BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus str. psy62] (731 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|190892570|ref|YP_001979112.1| DNA ligase (NAD+) protein [Rhizobium etli CIAT 652] gi|254781398|sp|B3PTU7|DNLJ_RHIE6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190697849|gb|ACE91934.1| DNA ligase (NAD+) protein [Rhizobium etli CIAT 652] Length = 718 Score = 651 bits (1678), Expect = 0.0, Method: Composition-based stats. Identities = 339/718 (47%), Positives = 492/718 (68%), Gaps = 5/718 (0%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 + ++ L+IE+A EL L +EI++HD Y+ +P I D++YDALKRR DA+ F Sbjct: 2 STEGSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEARF 61 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P+L R + P +G +++ V H+ P LSL+ ++ ED++ F+ +YRF + Sbjct: 62 PELIRE---DSPSRHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLP 118 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 D SI FT EPKIDG ++IRYE G+ V AA RGDG +GE+V+A IR I IP L +P Sbjct: 119 DQSIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVP 178 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 ++E+RGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF + Sbjct: 179 AVVEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAY 238 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G+ +E+ A Q+ M+Q + GFPVN +++ N+ I+++Y+E+ R L YDIDG Sbjct: 239 AWGEMAEMPADTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDG 298 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYKVD LQ++LG R+RSPRW +HKF +QA T + I+IQ+GRTG LTPVARL+P+ Sbjct: 299 VVYKVDSLELQQRLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPI 358 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGG-RDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 +GG ++TNATLHNEDYIKG+ SG+ +R DIR GD V+V+RAG+VIP+++D+++ + Sbjct: 359 TVGGVVVTNATLHNEDYIKGIGNSGERIRPEEHDIREGDTVIVQRAGDVIPQILDVVMEK 418 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R DA+ + FP CP+C S VR++N KTGK + RCTGG C AQ E LKHFVSR+A Sbjct: 419 RAADARSYEFPKTCPVCGSHAVREVNEKTGKTDSVRRCTGGFICRAQATEHLKHFVSRNA 478 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 F+IEGLG +Q+DFFF++EDP+ IR +IFTL++RQQ S TK+ENI GFG VSV LY Sbjct: 479 FDIEGLGSKQVDFFFENEDPSLQIRTAPEIFTLEKRQQDSLTKLENIDGFGKVSVGKLYA 538 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 +IN+RR+I+L RFI++LGIRHVG A+ LA+ Y +Y+ FA + + + W L Sbjct: 539 AINERRSIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMKEAAPLSGEAWTDLNA 598 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 + +G+++A+A+VEFY+ PRN+ + LL EV+P+ S + K +VFTG+L+K Sbjct: 599 IEGIGEVVARAMVEFYKEPRNVEVIGRLLDEVTPAEAEQPVTAGSPVAGKTVVFTGSLEK 658 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+ LGA V+ +S+KTDI++ G GSKL+KA++LGV+ M+E+++L L+ Sbjct: 659 FTRDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 716 >gi|86358438|ref|YP_470330.1| NAD-dependent DNA ligase LigA [Rhizobium etli CFN 42] gi|123738303|sp|Q2K6D3|DNLJ_RHIEC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|86282540|gb|ABC91603.1| DNA ligase (NAD+) protein [Rhizobium etli CFN 42] Length = 718 Score = 650 bits (1677), Expect = 0.0, Method: Composition-based stats. Identities = 339/718 (47%), Positives = 493/718 (68%), Gaps = 5/718 (0%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 + +E L+IE+A EL L +EI++HD Y+ +P I D++YDALKRR DA+ F Sbjct: 2 STEGSAVETLTIEEAAAELERLAREIAHHDALYHGKDQPEISDADYDALKRRNDALEARF 61 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P+L R + P ++G +++ V H+ P LSL+ ++ ED++ F+ +YRF + Sbjct: 62 PELIRE---DSPSRRVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVASVYRFLGRMP 118 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 D SI FT EPKIDG ++IRYE G+ AA RGDG +GE+V+A IR I IP L +P Sbjct: 119 DQSIAFTAEPKIDGLSMSIRYENGRLTTAATRGDGTTGENVTANIRTIAEIPNQLPKGVP 178 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 ++E+RGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF + Sbjct: 179 AVVEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAY 238 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G+ S++ A Q+ M+Q + GFPVN +++ N+ I+++Y+E+ R L YDIDG Sbjct: 239 AWGEMSDMPADTQFAMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLKRPDLDYDIDG 298 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYKVD LQ++LG R+RSPRW +HKF +QA T + I+IQ+GRTG LTPVARL+P+ Sbjct: 299 VVYKVDSLELQQRLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPI 358 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGG-RDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 +GG ++TNATLHNEDYIKG+ SG+ +R DIR GD V+V+RAG+VIP+++D+++ + Sbjct: 359 TVGGVVVTNATLHNEDYIKGIGNSGERIRPEEHDIREGDTVIVQRAGDVIPQILDVVMEK 418 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R + +P+ FP CP+C S VR++N KTGK+ + RCTGG C AQ E LKHFVSR+A Sbjct: 419 RLAEVKPYEFPKICPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNA 478 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 F+IEGLG +Q+DFFF++EDP+ IR +IFTL++RQQ S TK+ENI GFG VSV LY Sbjct: 479 FDIEGLGSKQIDFFFENEDPSLQIRTAPEIFTLEKRQQDSLTKLENIDGFGKVSVGKLYA 538 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 +IN+RR+I+L RFI++LGIRHVG A+ LA+ Y +Y+ FA + + D W L Sbjct: 539 AINERRSIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMKEAAPLSGDAWNDLNA 598 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 + +G+++A+A+VEFY+ PRN+ + LL EV+P+ S + K +VFTG+L+K Sbjct: 599 IEGIGEVVARAMVEFYKEPRNVEVIGRLLDEVTPAEAEQPVTAGSPVAGKTVVFTGSLEK 658 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+ LGA V+ +S+KTDI++ G GSKL+KA++LGV+ M+E+++L L+ Sbjct: 659 FTRDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 716 >gi|241205543|ref|YP_002976639.1| NAD-dependent DNA ligase LigA [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859433|gb|ACS57100.1| DNA ligase, NAD-dependent [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 718 Score = 650 bits (1677), Expect = 0.0, Method: Composition-based stats. Identities = 341/718 (47%), Positives = 489/718 (68%), Gaps = 5/718 (0%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 + ++ L+IE+A EL L +EI++HD Y+ +P I D++YDALKRR DA+ F Sbjct: 2 STESSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDRPEISDADYDALKRRNDALEVRF 61 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P+L R + P +G +++ V H+ P LSL+ ++ ED++ F+ +YRF + Sbjct: 62 PELIRE---DSPSRHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLP 118 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 D SI FT EPKIDG ++IRYE G+ V AA RGDG +GE+V+A IR I IP L +P Sbjct: 119 DQSIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVP 178 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 ++E+RGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF + Sbjct: 179 AVVEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAY 238 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G+ SE+ A Q+ M+Q + GFPVN V++ N+ I+++Y+E+ R L YDIDG Sbjct: 239 AWGEMSEMPADTQFGMVQTFKDWGFPVNPLVKRLNSVADILTHYDEIGLERPDLDYDIDG 298 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYKVD LQ +LG R+RSPRW +HKF +QA T + +IDIQ+GRTG LTPVARL P+ Sbjct: 299 VVYKVDSLELQARLGFRSRSPRWATAHKFPAEQAFTIVENIDIQVGRTGALTPVARLTPI 358 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMR-GGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 +GG ++TNATLHN DYI+G+ SG+ +R DIR+GD V+V+RAG+VIP+V+D+++ + Sbjct: 359 TVGGVVVTNATLHNADYIRGIGNSGERIRADEHDIRIGDTVIVQRAGDVIPQVLDVVMEK 418 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R +A+P+ FP CP+C S VR+ + KTGKL + RCTGG C AQ E LKHFVSR+A Sbjct: 419 RSAEARPYEFPKTCPVCGSHAVRERHEKTGKLDSVTRCTGGFICRAQATEHLKHFVSRNA 478 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 F+IEGLG +Q+DFFF++ED + IR DIFTL++RQQ S TK+ENI GFG VSV LY Sbjct: 479 FDIEGLGSKQIDFFFENEDASLQIRTAPDIFTLEKRQQQSLTKLENIDGFGKVSVGKLYA 538 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 +I +RR+I+L RFI++LGIRHVG A+ LA+ Y +Y F + A + D W L Sbjct: 539 AITERRSIALHRFIYALGIRHVGETTAKLLARSYGTYAAFETAMREAEALSGDAWNDLNA 598 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 + +G+++A+AIVEFY+ PRN+ + L++EV+P K S + K +VFTG+L+K Sbjct: 599 IEGIGEVVARAIVEFYKEPRNVEVITRLIEEVTPEEAEQPKTAGSPVAGKTVVFTGSLEK 658 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+ LGA V+ +S+KTDI++ G GSKL+KA++ GV+ M+E+++L L+ Sbjct: 659 FTRDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKAREFGVQTMDEDEWLALI 716 >gi|209550159|ref|YP_002282076.1| NAD-dependent DNA ligase LigA [Rhizobium leguminosarum bv. trifolii WSM2304] gi|254781399|sp|B5ZWH9|DNLJ_RHILW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|209535915|gb|ACI55850.1| DNA ligase, NAD-dependent [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 718 Score = 649 bits (1675), Expect = 0.0, Method: Composition-based stats. Identities = 339/718 (47%), Positives = 492/718 (68%), Gaps = 5/718 (0%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 + ++ L+IE+A EL L +EI++HD Y+ +P I D++YDALKRR DA+ F Sbjct: 2 STEGSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDRPQISDADYDALKRRNDALEVQF 61 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P+L R + P ++G +++ V H+ P LSL+ ++ ED++ F+ +YRF + Sbjct: 62 PELIRE---DSPSRRVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVASVYRFLGRLP 118 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 D SI FT EPKIDG ++IRYE G+ V AA RGDG +GE+V+A IR I IP L +P Sbjct: 119 DQSIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVP 178 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 ++E+RGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF + Sbjct: 179 AVVEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAY 238 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G+ SE+ A Q++M+Q + GFPVN +++ N+ I+++Y+E+ R L YDIDG Sbjct: 239 AWGEMSEMPADTQFDMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDG 298 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYKVD LQ +LG R+RSPRW +HKF +QA T + I+IQ+GRTG LTPVARL+P+ Sbjct: 299 VVYKVDSLELQARLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPI 358 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGG-RDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 +GG ++TNATLHNEDYIKG+ SG+ +R DIR GD V+V+RAG+VIP+++D+++ + Sbjct: 359 TVGGVVVTNATLHNEDYIKGIGNSGERIRPEDHDIREGDTVIVQRAGDVIPQILDVVMEK 418 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R DA+ + FP CP+C S VR++N KTGK+ + RCTGG C AQ E LKHFVSR+A Sbjct: 419 RTADARSYEFPKTCPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNA 478 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 F+IEGLG +Q+DFFF+ ED + IR +IFTL++RQQ S TK+ENI GFG VSV LY Sbjct: 479 FDIEGLGSKQIDFFFEHEDASLQIRTAPEIFTLEKRQQASLTKLENIDGFGKVSVGKLYT 538 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 +IN+RR+I+L RFI++LGIRHVG A+ LA+ Y +Y+ FA + + D W L Sbjct: 539 AINERRSIALHRFIYALGIRHVGETTAKLLARSYGTYEAFAMAMKEAAPLSGDAWNDLNA 598 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 + +G+++A+A+VEFY+ PRN+ + L++EV+P S + K +VFTG+L+K Sbjct: 599 IEGIGEVVARAMVEFYKEPRNVEVITRLIEEVTPQQAEQPVTTGSPVAGKTVVFTGSLEK 658 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+ LGA V+ +S+KTDI++ G GSKL+KA++LGV+ M+E+++L L+ Sbjct: 659 FTRDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 716 >gi|327194610|gb|EGE61460.1| DNA ligase (NAD+) protein [Rhizobium etli CNPAF512] Length = 718 Score = 648 bits (1672), Expect = 0.0, Method: Composition-based stats. Identities = 340/718 (47%), Positives = 493/718 (68%), Gaps = 5/718 (0%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 + ++ L+IE+A EL L +EI++HD Y+ +P I D++YDALKRR DA+ F Sbjct: 2 STEGSAVDTLTIEEAAAELERLAKEIAHHDSLYHGKDQPEISDADYDALKRRNDALEVRF 61 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P+L R + P +G +++ V H+ P LSL+ ++ ED++ F+ +YRF + Sbjct: 62 PELIRE---DSPSRHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLP 118 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 D SI FT EPKIDG ++IRYE G+ V AA RGDG +GE+V+A IR I IP L +P Sbjct: 119 DQSIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVP 178 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 ++E+RGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF + Sbjct: 179 AVVEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAY 238 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G+ +E+ A Q+ M+Q + GFPVN +++ N+ I+++Y+E+ R L YDIDG Sbjct: 239 AWGEMAEMPADTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDG 298 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYKVD LQ++LG R+RSPRW +HKF +QA T + I+IQ+GRTG LTPVARL+P+ Sbjct: 299 VVYKVDSLELQQRLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPI 358 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGG-RDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 +GG ++TNATLHNEDYIKG+ SG+ +R DIR GD V+V+RAG+VIP+++D+++ + Sbjct: 359 TVGGVVVTNATLHNEDYIKGIGNSGERIRPEEHDIREGDTVIVQRAGDVIPQILDVVMEK 418 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R DA+ + FP CP+C S VR++N KTGK+ + RCTGG C AQ E LKHFVSR+A Sbjct: 419 RAADARSYEFPKTCPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNA 478 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 F+IEGLG +Q+DFFF++EDP+ IR +IFTL++RQQ S TK+ENI GFG VSV LY Sbjct: 479 FDIEGLGAKQVDFFFENEDPSLQIRTAPEIFTLEKRQQDSLTKLENIDGFGKVSVGKLYA 538 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 +IN+RR+I+L RFI++LGIRHVG A+ LA+ Y +Y+ FA + + D W L Sbjct: 539 AINERRSIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMKEAAPLSGDAWNDLNA 598 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 + +G+++A+A+VEFY+ PRN+ + LL EV+P+ S + K +VFTG+L+K Sbjct: 599 IEGIGEVVARAMVEFYKEPRNVEVIGRLLDEVTPAEAEQPVTAGSPVAGKTVVFTGSLEK 658 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+ LGA V+ +S+KTDI++ G GSKL+KA++LGV+ M+E+++L L+ Sbjct: 659 FTRDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 716 >gi|227822641|ref|YP_002826613.1| NAD-dependent DNA ligase LigA [Sinorhizobium fredii NGR234] gi|254781400|sp|C3MEL9|DNLJ_RHISN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|227341642|gb|ACP25860.1| DNA ligase [Sinorhizobium fredii NGR234] Length = 717 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 353/716 (49%), Positives = 493/716 (68%), Gaps = 4/716 (0%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 + P+E L+ +A +EL+ L E++ HD Y+ P I D++YDALKRR D I FP Sbjct: 3 NEKKPVEQLTETEAAEELAFLVTELARHDALYHGQDAPEISDADYDALKRRNDLIEELFP 62 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 L R + P KIG +L+ V H+ P LSL+ ++ ED R F+ IYRF K D Sbjct: 63 ALIRE---DSPSRKIGAAPSLTFQPVLHARPMLSLDNTFSDEDARDFVAGIYRFLGKLPD 119 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 +SI FT EPKIDG +++RYE K V AA RGDG +GE+V+A IR I IP+ L + P+ Sbjct: 120 HSIAFTAEPKIDGLSMSLRYENRKLVTAATRGDGTTGENVTANIRTIRMIPQTLPADAPD 179 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 ++EVRGE+Y++K+DF ALN EM A GR Y NPRN ASG LR+L+ +R L FF + Sbjct: 180 VVEVRGEIYMAKSDFAALNAEMAAQGRPLYVNPRNTASGSLRQLDAKVTASRKLRFFAYA 239 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G+ S + + Q+ M++ + GFPVN +++ ++ ++ +Y+ ++ R L YDIDG+ Sbjct: 240 WGEISAMPSDTQFGMVETFKAWGFPVNPLMQRLSSADELLQHYHHIERERPDLDYDIDGV 299 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 VYKVD LQ +LG R+RSPRW +HKF +QA TRL IDIQ+GRTG LTPVARLEP+ Sbjct: 300 VYKVDRLDLQARLGFRSRSPRWATAHKFPAEQAFTRLKGIDIQVGRTGALTPVARLEPIT 359 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 +GG ++TNATLHNEDYI+G+ SG+ +R GRDIR+GD V+V+RAG+VIP++VD++++ER Sbjct: 360 VGGVVVTNATLHNEDYIRGIGNSGEPIREGRDIRIGDMVIVQRAGDVIPQIVDVVMDERA 419 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 A+P+ FP+ CP+C S VRD+N KTGK+ A RCTGG C AQ +E LKHFVSR AF+ Sbjct: 420 EGAEPYRFPTTCPVCGSHAVRDINEKTGKVDAVRRCTGGFVCRAQAIEHLKHFVSRHAFD 479 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEGLG +Q++FFF+SEDP SIR DIFTL+RRQ+ S TK+ENI GFG VSV LY++I Sbjct: 480 IEGLGSKQIEFFFESEDPTLSIRTAPDIFTLERRQEASLTKLENIEGFGKVSVRKLYEAI 539 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 N RR I+L RFI++LGIRHVG A+ LA+ Y +Y++F + + + D W L + Sbjct: 540 NARREIALHRFIYALGIRHVGETTAKLLARSYGTYEHFRAAMVDAGSLAGDAWNELNSIE 599 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +G+++A+AIVEFY+ PRN+ V LL+EV P + S + K +VFTG+L+K+ Sbjct: 600 GIGEVVARAIVEFYKEPRNLKVVSDLLEEVRPESAETRVSTDSPVAGKTVVFTGSLEKMT 659 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+ LGA V+ +S+KTDI++ G GSKL+KA++LGV+ M+E+++L L+ Sbjct: 660 RDEAKAKAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 715 >gi|222149123|ref|YP_002550080.1| NAD-dependent DNA ligase LigA [Agrobacterium vitis S4] gi|254781248|sp|B9JY41|DNLJ_AGRVS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|221736108|gb|ACM37071.1| DNA ligase [Agrobacterium vitis S4] Length = 719 Score = 643 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 343/716 (47%), Positives = 478/716 (66%), Gaps = 6/716 (0%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 LIP+E LS EQA +EL L I++HD Y+ +P I D++YDALKRR DAI FP L Sbjct: 5 LIPVEDLSEEQAGQELIRLAAAIAHHDALYHGKDQPEISDADYDALKRRNDAIEARFPTL 64 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 RS + P ++G ++TH+ P LSL+ ++ ED+ F+ +YRF DNS Sbjct: 65 VRS---DSPSQRVGAAPAGIFSQITHARPMLSLDNTFSDEDVADFVASVYRFLGVMPDNS 121 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE K AA RGDG +GE+V+A I I IP L + P+++ Sbjct: 122 IAFTAEPKIDGLSMSIRYEHRKLKTAATRGDGTTGENVTANILTIKEIPTELPADAPDVV 181 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++K+DFLALN +M A GR+ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 182 EVRGEVYMAKSDFLALNAQMEAEGRQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWG 241 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S + A+ Q M++ + GFPVN R+ + I+++Y E+ R+ L YDIDG+VY Sbjct: 242 EMSTMPAETQSGMVEAFKRWGFPVNPLTRRLTSVEEIIAHYREIGLQRADLDYDIDGVVY 301 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW +HKF +QA T + IDIQ+GRTG LTPVARLEP+ +G Sbjct: 302 KVDRLDLQARLGFRSRSPRWATAHKFPAEQAFTTVEAIDIQVGRTGALTPVARLEPITVG 361 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGG-RDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G ++TNATLHN DYI+G+ G+ +R DIR+GD V+V+RAG+VIP+V+D+++ +R Sbjct: 362 GVVVTNATLHNADYIEGIGNGGERIRPEGHDIRIGDTVIVQRAGDVIPQVLDVVLEKRPE 421 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + + FP CP+C S VR+ N KTGKL + RCTGG CSAQ E +KHFVSR+AF+I Sbjct: 422 TSVKYEFPKTCPVCGSHAVREKNEKTGKLDSVTRCTGGFVCSAQAKEHIKHFVSRNAFDI 481 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGDVSVTNLYDSI 542 EGLG +Q+DFFF+SEDPA IR DIFTL++RQ+ S+ T++ENI GFG VSV L+D+I Sbjct: 482 EGLGTKQVDFFFESEDPALMIRTAPDIFTLKQRQEASSLTRLENIDGFGRVSVRKLFDAI 541 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + RR I+L RFIF+LGIRHVG A+ LA+ Y SY FA + + W L + Sbjct: 542 DARREIALNRFIFALGIRHVGETTAKLLARSYGSYAAFADAMQEAAPKFGEAWNELNSID 601 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +G+++A ++VEF++ PRN+ V LLKEV+P S + K +VFTG+L++ Sbjct: 602 GIGEVVAASMVEFFKEPRNLEVVSRLLKEVTPLDAEAVTASDSPVAGKTVVFTGSLERFT 661 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+ LGA V+ +S+KTD ++ G GSKL+KA+++GV +M E+++L L+ Sbjct: 662 RDEAKARAESLGAKVAGSVSKKTDYLVAGPGAGSKLDKAREVGVTVMTEDEWLALI 717 >gi|254502790|ref|ZP_05114941.1| DNA ligase, NAD-dependent [Labrenzia alexandrii DFL-11] gi|222438861|gb|EEE45540.1| DNA ligase, NAD-dependent [Labrenzia alexandrii DFL-11] Length = 725 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 314/717 (43%), Positives = 466/717 (64%), Gaps = 9/717 (1%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 I + L+ E A+ EL L EI+ HD Y+Q P I D++YDAL+RR AI FPD Sbjct: 14 PDIAVLDLTPEAAKAELERLASEIAEHDRRYHQEDAPTISDADYDALRRRNSAIEARFPD 73 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD- 123 L + +GP ++G K+TH +P LSL+ ++ +D+R F+ R+ RF + Sbjct: 74 LILA---DGPSAQVGAAPASGFGKITHRVPMLSLDNAFSDDDVRDFVGRVRRFLKFDPLM 130 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 ++ T EPKIDG +++RYE GK VYAA RGDG +GE+V+A + I IP L+ ++ + Sbjct: 131 GALAVTAEPKIDGLSLSLRYEDGKLVYAATRGDGTTGENVTANAKTITDIPHTLAGSVLD 190 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 ++EVRGEVY++ DF ALN M+A G K +ANPRNAA+G LR+L +R L FF + Sbjct: 191 VVEVRGEVYMAHKDFEALNARMVANGGKVFANPRNAAAGSLRQLKSEITASRPLRFFAYA 250 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G+ S + Q M+ ++ GF +N +++ T +++ Y+ ++ R+ L YDIDG+ Sbjct: 251 WGEMSTLPKDTQDGMVAQLAAWGFQINPLMKRCETVEELLAVYHGIEENRAQLDYDIDGV 310 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 VYKVD LQ++LG +RSPRW I+HKF +QA T L DI+IQ+GRTG LTPVA+LEP+ Sbjct: 311 VYKVDRLDLQERLGFVSRSPRWAIAHKFPAEQAWTVLNDIEIQVGRTGALTPVAKLEPIT 370 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 +GG +++NATLHNEDYIKG+ G+ +RGG+D+R GD V ++RAG+VIP++VD+ +++R Sbjct: 371 VGGVVVSNATLHNEDYIKGIGQDGEPIRGGKDLRKGDAVKIQRAGDVIPQIVDVDLDKRL 430 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 A+P+ FP+ CP C S VR+ N KTG+ A RCTGGL C AQ E+LKHFVSR+AF+ Sbjct: 431 DGAEPYEFPTRCPRCNSHAVREENEKTGRKDAVRRCTGGLICPAQATEKLKHFVSRNAFD 490 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEG G +Q+D F++ + + ADIFTL R + S TK+ N G+G VS NL+++I Sbjct: 491 IEGFGDKQVDAFYQDD----LVMTAADIFTLAERDKQSLTKLRNREGWGAVSAKNLFEAI 546 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + RR I L RFIF+LGIRHVG A+ LA+ Y S+ NF + + H ++ W L + Sbjct: 547 DARREIDLHRFIFALGIRHVGEGNAKLLARAYGSWANFYKAMTEASDHGSEAWAELNDID 606 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +G I+A A+VEF+ N ++ALL+EV+P+ S + K +VFTG+L+++ Sbjct: 607 GIGHIVADALVEFFAENHNREQLDALLQEVTPTDAEKIDASGSPVAGKTVVFTGSLERMT 666 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +A+ + GA VS +S+KTD+++ G GSKL+KA +L +++++E+ + L+ Sbjct: 667 RDEAKAMAERFGAKVSGSVSKKTDLVVAGPGAGSKLKKASELEIEVISEDDWFDLVD 723 >gi|307944884|ref|ZP_07660221.1| DNA ligase, NAD-dependent [Roseibium sp. TrichSKD4] gi|307771808|gb|EFO31032.1| DNA ligase, NAD-dependent [Roseibium sp. TrichSKD4] Length = 721 Score = 637 bits (1644), Expect = e-180, Method: Composition-based stats. Identities = 323/720 (44%), Positives = 465/720 (64%), Gaps = 9/720 (1%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 + + + +EAL+ EQA EL L I+ HD Y+Q P I D++YDAL+RR AI Sbjct: 7 VSAFEKLDVEALTSEQAETELERLANAIAKHDKLYHQDDAPAISDADYDALRRRNTAIEA 66 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FPDL R + P +G + + K+ H +P LSL+ +N ED++ F+ R+ RF + Sbjct: 67 RFPDLVRD---DSPSRNVGAAPSEAFSKIEHKVPMLSLDNAFNDEDVQDFVGRVRRFLKF 123 Query: 121 KDD-NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179 ++ T EPKIDG +++RYE G VYAA RGDG +GE+V+A + I IP+ LS Sbjct: 124 DPLMGALAVTAEPKIDGLSLSLRYEAGALVYAATRGDGTTGENVTANAKTISDIPQKLSG 183 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238 + P+++E+RGEVY++ DF LN M A G K +ANPRNAA+G LR+L +R L F Sbjct: 184 DAPDVVEIRGEVYMAHADFQVLNQRMEANGGKVFANPRNAAAGSLRQLKSEITASRPLKF 243 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 F + G S + A Q M+++M+ GF +N +++ T +++ Y+ ++ R+TL YD Sbjct: 244 FAYAWGDMSALPADTQMGMVEQMKVWGFQINPLMKRCETVEELLAVYHGIEEDRATLGYD 303 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKVD LQ++LG +RSPRW I+HKF ++A T L +IDIQ+GRTG LTPVA+L Sbjct: 304 IDGVVYKVDRLDLQQRLGFVSRSPRWAIAHKFPAEKAYTILNEIDIQVGRTGALTPVAKL 363 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GG +++NATLHNEDYIKG+ G+ +RGG+D+R GD V V+RAG+VIP++VD+ + Sbjct: 364 EPVTVGGVVVSNATLHNEDYIKGIGQDGEPIRGGKDLRPGDTVQVQRAGDVIPQIVDVDL 423 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ++R A+PF FPS CP C S VR+ NPKTG+L A RCTG L C AQ ERLKHFVSR Sbjct: 424 SKRKEGAEPFEFPSVCPRCGSHAVREENPKTGRLDAVRRCTGALICPAQATERLKHFVSR 483 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 +AF+IEG G +Q+D FF ++ ADIFTL+ R + S TK+ N G+G VS NL Sbjct: 484 NAFDIEGFGDKQVDAFFAD----GLVKTAADIFTLEERDKQSLTKLRNREGWGTVSAKNL 539 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +++IN +RNI L R IF LGIRHVG A+ LA+ Y S+Q F + N + W L Sbjct: 540 FEAINAKRNIDLHRLIFGLGIRHVGEGNAKLLARAYGSWQAFYDAMVKAHDKNGEAWEDL 599 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 + +G I+A+A+ EF+ N ++ALL ++SP + S + K +VFTG L Sbjct: 600 NAIDGIGHIVAEALTEFFAEEHNREQLDALLAQISPKQVEQIDSSGSPVAGKTVVFTGAL 659 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +++ R +A+ +LGA VS +S+KTD+++ G GSKL+KAQ L ++++ E+ + L+ Sbjct: 660 ERMTRDEAKAMAERLGAKVSGSVSKKTDLLVAGPGAGSKLKKAQGLQIEVITEDVWFDLV 719 >gi|325293451|ref|YP_004279315.1| DNA ligase [Agrobacterium sp. H13-3] gi|325061304|gb|ADY64995.1| DNA ligase [Agrobacterium sp. H13-3] Length = 724 Score = 637 bits (1644), Expect = e-180, Method: Composition-based stats. Identities = 342/726 (47%), Positives = 485/726 (66%), Gaps = 12/726 (1%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M K Q IP+E L+ +A EL+ L E++ HD Y+ P I D++YDALKRR DAI Sbjct: 1 MSKDQ-IPVENLTELEASSELAFLAAELARHDALYHGKDAPEISDADYDALKRRNDAIEA 59 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 AFP L R+ + P K+G + + H+ P LSL+ ++ DLR F++ +YRF Sbjct: 60 AFPALVRA---DSPSKKVGFTPLPTFAPIVHARPMLSLDNTFSEGDLRDFVSSVYRFLGH 116 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 D+SI FT EPKIDG ++IRYE GK AA RGDG +GE+V+A I+ I IP L + Sbjct: 117 LPDDSIAFTAEPKIDGLSMSIRYENGKLKTAATRGDGTTGENVTANIKTIKEIPNQLPAD 176 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +P+++EVRGEVY++K+DF+ALN +M A G++ Y NPRN ASG LR+ + R L FF Sbjct: 177 VPDVVEVRGEVYMAKSDFMALNAQMEADGKQTYVNPRNTASGSLRQFDANVTAKRKLRFF 236 Query: 240 VHGLGKT-----SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 + LG+ A QY +++K R GFPVN +++ + ++ +YNE+ R Sbjct: 237 AYALGEVSNGGQPTRIADTQYGIVEKFREWGFPVNPLMKRFTSAEQLLEHYNEIGVARPD 296 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L YDIDG+VYKVD LQ++LG R+RSPRW +HKF +QA T + +I+IQ+GRTG LTP Sbjct: 297 LDYDIDGVVYKVDRLDLQERLGFRSRSPRWATAHKFPAEQAFTTVENIEIQVGRTGALTP 356 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG-RDIRVGDRVLVKRAGEVIPKV 413 VARL P+ +GG ++TNATLHN DYI+G+ SG+ +R DIR+GD V+V+RAG+VIP+V Sbjct: 357 VARLTPITVGGVVVTNATLHNADYIEGIGNSGERIRPEDHDIRIGDTVIVQRAGDVIPQV 416 Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473 +D+++ +R +A ++FP CP+C S VR+ N KTGKL + RCTGG C AQ +E LK Sbjct: 417 LDVLLEKRPAEAVKYAFPEKCPVCGSHAVRERNEKTGKLDSVTRCTGGFVCRAQAVEHLK 476 Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGD 532 HFVSR+AF+IEGLG +Q+DFFF+SEDPA SI+ DIFTL+ RQ+ S TK+ENI GFG Sbjct: 477 HFVSRNAFDIEGLGSKQIDFFFESEDPALSIKTAPDIFTLKARQEASHLTKLENIDGFGK 536 Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592 VSV L+D+I+ RR I L R IF+LGIRHVG A+ LA+ Y +Y++F + + + Sbjct: 537 VSVKKLFDAIDARREIDLHRLIFALGIRHVGETTAKLLARSYGTYEHFEEAMKAAADPAS 596 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652 D W L + +G+++A+AI+EFY+ PRN+ ++ L++E+ P S + K + Sbjct: 597 DAWAELNSIDGIGEVVARAIIEFYKEPRNLDVIDRLIRELRPKEAEKPSTEGSPVAGKTV 656 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 VFTG+L+K R +A+ LGA V+ +S+KTDI++ G GSKL KA +LGV+ M+E+ Sbjct: 657 VFTGSLEKFTRDEAKARAESLGAKVAGSVSKKTDILVAGPGAGSKLAKAAELGVQTMDED 716 Query: 713 QFLFLL 718 ++L L+ Sbjct: 717 EWLALI 722 >gi|15889366|ref|NP_355047.1| NAD-dependent DNA ligase LigA [Agrobacterium tumefaciens str. C58] gi|166215388|sp|A9CIB3|DNLJ_AGRT5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|15157212|gb|AAK87832.1| DNA ligase [Agrobacterium tumefaciens str. C58] Length = 724 Score = 634 bits (1635), Expect = e-179, Method: Composition-based stats. Identities = 345/726 (47%), Positives = 484/726 (66%), Gaps = 12/726 (1%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M K Q IP+E L+ +A EL+ L E++ HD Y+ P I D++YDALKRR DAI Sbjct: 1 MSKDQ-IPVENLTELEASSELAFLAAELARHDALYHGKDAPEISDADYDALKRRNDAIEA 59 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 AFP L R+ + P K+G + + H+ P LSL+ ++ EDLR F++ +YRF Sbjct: 60 AFPALVRA---DSPSKKVGFTPLPTFAPIVHARPMLSLDNTFSEEDLRDFVSSVYRFLGH 116 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 D+SI FT EPKIDG ++IRYE K AA RGDG +GE+V+A IR I IP L + Sbjct: 117 LPDDSIAFTAEPKIDGLSMSIRYENRKLKTAATRGDGTTGENVTANIRTIKEIPNELPAD 176 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P+++EVRGEVY++K+DFLALN +M A G++ Y NPRN ASG LR+L+ R L FF Sbjct: 177 APDVVEVRGEVYMAKSDFLALNAQMEADGKQTYVNPRNTASGSLRQLDANVTAKRKLRFF 236 Query: 240 VHGLGKTSE-----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 + LG+ S A QY +++K R GFPVN +++ + ++ +YNE+ R Sbjct: 237 AYALGEVSNGGQPARIADTQYGIVEKFREWGFPVNPLMKRFTSAQQLLEHYNEIGVARPD 296 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L YDIDG+VYKVD LQ++LG R+RSPRW +HKF +QA T + +I+IQ+GRTG LTP Sbjct: 297 LDYDIDGVVYKVDRLDLQERLGFRSRSPRWATAHKFPAEQAFTTVENIEIQVGRTGALTP 356 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG-RDIRVGDRVLVKRAGEVIPKV 413 VARL P+ +GG ++TNATLHN DYI+G+ SG+ +R DIR+GD V+V+RAG+VIP+V Sbjct: 357 VARLTPITVGGVVVTNATLHNADYIEGIGNSGERIRPEDHDIRIGDTVIVQRAGDVIPQV 416 Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473 +D+++ +R A + FP CP+C S VR+ N KTGKL + RCTGG C AQ +E LK Sbjct: 417 LDVLLEKRAAGAAKYVFPEKCPVCGSHAVRERNEKTGKLDSVTRCTGGFVCRAQAVEHLK 476 Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGD 532 HFVSR+AF+IEGLG +Q+DFFF+S+DPA SI+ DIFTL+ RQ+ S TK+ENI GFG Sbjct: 477 HFVSRNAFDIEGLGTKQIDFFFESDDPALSIKTAPDIFTLKARQEASHLTKLENIDGFGK 536 Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592 VSV L+D+I+ RR I L R IF+LGIRHVG A+ LA+ Y +Y++F + + + Sbjct: 537 VSVKKLFDAIDARRAIDLHRLIFALGIRHVGETTAKLLARSYGTYEHFEKAMKAAADPAS 596 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652 D W L + +G+++A+AI+EFY+ PRN+ ++ L++E+ P S + K + Sbjct: 597 DAWAELNSIDGIGEVVARAIIEFYKEPRNLDVIDRLIRELQPKEAEKPSTEGSPVAGKTV 656 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 VFTG+L+K R +A+ LGA V+ +S+KTDI++ G GSKL KA +LGV+ M+E+ Sbjct: 657 VFTGSLEKFTRDEAKARAESLGAKVAGSVSKKTDILVAGPGAGSKLAKATELGVQTMDED 716 Query: 713 QFLFLL 718 ++L L+ Sbjct: 717 EWLALI 722 >gi|192292401|ref|YP_001993006.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris TIE-1] gi|254781404|sp|B3QFL8|DNLJ_RHOPT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|192286150|gb|ACF02531.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris TIE-1] Length = 715 Score = 634 bits (1634), Expect = e-179, Method: Composition-based stats. Identities = 304/727 (41%), Positives = 448/727 (61%), Gaps = 27/727 (3%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K + I L+ +A+ EL L EI HD YYQ P I D++YDAL+RR +AI Sbjct: 4 KTKPAPDIATLTKPKAKVELMRLRLEIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQK 63 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP+L + + P +G KV H++P LSL + +++ +F+ R+ RF + Sbjct: 64 FPELVNA---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVAEFVERVQRFLRLD 120 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 D +I EPKIDG +++RYE G+ V AA RGDG +GEDV+A +R I +P L Sbjct: 121 DVPAI--VAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPNTLKGKH 178 Query: 182 -PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFF 239 P E+RGEVY+ K DFLALN G +ANPRN+A+G LR+ + +R L FF Sbjct: 179 IPAACELRGEVYMLKQDFLALNKRQEEAGETVFANPRNSAAGSLRQKDVLVTASRPLKFF 238 Query: 240 VHGLGK--TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 + G+ T + Q++MLQ + GF VN + ++ +++Y + R++LPY Sbjct: 239 AYAWGEMSTYPMDEPTQHKMLQWLDHAGFVVNPEITLCHSVEDALAFYRRIGEKRASLPY 298 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+VYKVD Q++LG +RSPRW I+HKFA +QA+T L IDIQ+GRTG LTPVAR Sbjct: 299 DIDGVVYKVDRLDYQERLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVAR 358 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 L+PV +GG ++ NATLHNEDYI+G+ G+ +R G DIR GD V+V+RAG+VIP++V ++ Sbjct: 359 LQPVTVGGVVVQNATLHNEDYIRGIGNDGEPIRDGVDIREGDTVVVQRAGDVIPQIVSVV 418 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 + +R A+P+ FP CP+C S VR+ A RCTG L C AQ +ERLKHFVS Sbjct: 419 MQKRPAGAEPYHFPHKCPVCGSHAVREEGE------AVWRCTGALICPAQAVERLKHFVS 472 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R AF+I+GLG++Q++ F + ++ PADIFTL+ R K+E + G+G+ SV N Sbjct: 473 RLAFDIDGLGEKQIELFHER----GWVQEPADIFTLKAR--NDQLKLEQLEGYGETSVRN 526 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH------N 591 L+ +I+ RR I L R IF+LGIRHVG A+ LA++Y + F + Sbjct: 527 LFAAIDARRTIELHRLIFALGIRHVGEGNAKLLARHYGTLDAFLSAMRAAADAQTEEGNT 586 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651 ++ + L + +GD++A+A+VEF+ RNI A++ALL E++ + + + + K Sbjct: 587 SEAYQDLDNIAGIGDVVAEAVVEFFAEERNIKALDALLAELTEVLPAEQARRDTAVAGKT 646 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 +VFTG+L K R +A+ +LGA V+ +S+KTD ++ G++ GSKL KA+ LGV ++ E Sbjct: 647 VVFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKAKDLGVTVLTE 706 Query: 712 EQFLFLL 718 +++L L+ Sbjct: 707 DEWLALI 713 >gi|118590881|ref|ZP_01548281.1| NAD-dependent DNA ligase LigA [Stappia aggregata IAM 12614] gi|118436403|gb|EAV43044.1| NAD-dependent DNA ligase LigA [Stappia aggregata IAM 12614] Length = 750 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 315/714 (44%), Positives = 463/714 (64%), Gaps = 9/714 (1%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I+AL+ E+A+ EL L EI+ HD Y+Q P+I D++YDAL+RR +I FP+L Sbjct: 42 TDIDALTQEEAQVELKRLAAEIAEHDRRYHQEDAPVISDADYDALRRRNASIEARFPNLI 101 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NS 125 +GP ++G K+TH +P LSL+ +N +D+R F+ R+ RF + + Sbjct: 102 LD---DGPSAQVGAAPASGFGKITHRVPMLSLDNAFNDDDVRDFVGRVRRFLKYDPLMGA 158 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + T EPKIDG +++RYE G VYAA RGDG +GE+V+ + I IP LS +P+++ Sbjct: 159 LAVTAEPKIDGLSLSLRYENGTLVYAATRGDGTTGENVTENAKTIKDIPEKLSGTVPDVV 218 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++ DF ALN+ M A G K +ANPRNAA+G LR+L +R L FF + G Sbjct: 219 EVRGEVYMAHKDFQALNERMAANGGKVFANPRNAAAGSLRQLKSEITASRPLRFFAYAWG 278 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S + Q+ M++++ GF +N +R+ T ++ Y+ ++ R+ L YDIDG+VY Sbjct: 279 EMSALPEDTQFGMVKQLEAWGFQINPLMRRCETVEELLGVYHGIEESRAQLDYDIDGVVY 338 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ++LG +RSPRW I+HKF +QA T L DI+IQ+GRTG LTPVA+LEP+ +G Sbjct: 339 KVDRLDLQERLGFVSRSPRWAIAHKFPAEQAYTVLNDIEIQVGRTGALTPVAKLEPITVG 398 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +++NATLHNEDYIKG+ G+ +RGG+D+R+GD V ++RAG+VIP++VDI +++R Sbjct: 399 GVVVSNATLHNEDYIKGIGQDGEPIRGGKDLRIGDTVKIQRAGDVIPQIVDIDLDKRPEG 458 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+ F FP+ CP C S VR+ KTG+ A RCTGGL C AQ E+LKHFVSR+AF+IE Sbjct: 459 AEAFEFPTICPACGSHAVREEKEKTGRRDAVRRCTGGLICPAQATEKLKHFVSRNAFDIE 518 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G G +Q+D F+K + PADIFTL+ R + S TK+ N G+G VS NL+++IN Sbjct: 519 GFGDKQVDAFYKE----GLVMAPADIFTLEERDKRSLTKLRNREGWGAVSAKNLFEAINA 574 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 RR I L RFIF+LGIRHVG A+ LA+ Y S+ F + ++ W L + + Sbjct: 575 RREIDLHRFIFALGIRHVGEGNAKLLARAYGSWAAFYAAMKAAHDTESEAWAELNDIDGI 634 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G I+A+A+ EF+ N+ ++ALL EVSP S + K +VFTG+L+++ R Sbjct: 635 GHIVAEALAEFFAEQHNLDQLDALLVEVSPKDAEKINASGSPVAGKTVVFTGSLERMTRD 694 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+ + GA + +S+KTD+++ G GSKL+KAQ+L +++++E+ + L+ Sbjct: 695 EAKAMAERFGAKTAGSVSKKTDLVVAGPGAGSKLKKAQELEIEVISEDDWFDLV 748 >gi|116253034|ref|YP_768872.1| NAD-dependent DNA ligase LigA [Rhizobium leguminosarum bv. viciae 3841] gi|123261370|sp|Q1ME47|DNLJ_RHIL3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|115257682|emb|CAK08780.1| putative DNA ligase [Rhizobium leguminosarum bv. viciae 3841] Length = 718 Score = 632 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 344/720 (47%), Positives = 494/720 (68%), Gaps = 6/720 (0%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M ++ L+IE+A EL+ L +EI++HD Y+ +P I D++YDALKRR DA+ Sbjct: 1 MPTEGST-VDTLTIEEAAAELARLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEV 59 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP+L R + P +G +++ V H+ P LSL+ ++ ED++ F+ +YRF + Sbjct: 60 RFPELIRE---DSPSRHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGR 116 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 D SI FT EPKIDG ++IRYE G+ V AA RGDG +GE+V+A IR I IP L Sbjct: 117 LPDQSIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKG 176 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +P ++E+RGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF Sbjct: 177 VPAVVEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFF 236 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ SE+ A Q+ M+Q + GFPVN +++ N+ I+++Y+E+ R L YDI Sbjct: 237 AYAWGEMSEMPADTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDI 296 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD LQ +LG R+RSPRW +HKF +QA T + +IDIQ+GRTG LTPVARL Sbjct: 297 DGVVYKVDSLELQARLGFRSRSPRWATAHKFPAEQAFTIVENIDIQVGRTGALTPVARLT 356 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIV 418 P+ +GG ++TNATLHN DYI+G+ SG+ +R DIR+GD V+V+RAG+VIP+V+D+++ Sbjct: 357 PITVGGVVVTNATLHNADYIQGIGNSGERIRDDEHDIRIGDTVIVQRAGDVIPQVLDVVM 416 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 +R +A+P+ FP CP+C S VR+ + KTGKL + RCTGG C AQ E LKHFVSR Sbjct: 417 EKRPAEARPYEFPKTCPVCGSHAVRERHEKTGKLDSVTRCTGGFICRAQATEHLKHFVSR 476 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 +AF+IEGLG +Q+DFFF++ED + IR DIFTL++RQQ S TK+ENI GFG VSV L Sbjct: 477 NAFDIEGLGSKQIDFFFENEDASLQIRTAPDIFTLEKRQQQSLTKLENIDGFGKVSVGKL 536 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 Y +I++RR+I+L RFI++LGIRHVG A+ LA+ Y +Y+ F + A + D W L Sbjct: 537 YGAIDERRSIALHRFIYALGIRHVGETTAKLLARSYGTYEAFETAMREAEALSGDAWNDL 596 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 + +G+++A+AIVEFY+ PRN+ + LL+EV+P K S + K +VFTG+L Sbjct: 597 NAIEGIGEVVARAIVEFYKEPRNVEVITRLLEEVTPEEAEQPKTAGSPVAGKTVVFTGSL 656 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +K+ R +A+ LGA V+ +S+KTDI++ G GSKL+KA++LGV+ M+E+Q+L L+ Sbjct: 657 EKLTRDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDQWLALI 716 >gi|182677699|ref|YP_001831845.1| DNA ligase, NAD-dependent [Beijerinckia indica subsp. indica ATCC 9039] gi|254781257|sp|B2IGH4|DNLJ_BEII9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|182633582|gb|ACB94356.1| DNA ligase, NAD-dependent [Beijerinckia indica subsp. indica ATCC 9039] Length = 699 Score = 631 bits (1626), Expect = e-178, Method: Composition-based stats. Identities = 300/714 (42%), Positives = 452/714 (63%), Gaps = 21/714 (2%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 PIE+LS QA++E L ++I+ HD YYQ P + D+EYDAL+RR +A+ AFP+L Sbjct: 6 PIESLSPAQAKREHRRLGEQITEHDRLYYQEDAPRVSDAEYDALRRRYEALETAFPELVS 65 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 +E KIG K+ H +P LSL I++ E++ +F+ R+ RF D + Sbjct: 66 AE---SLTKKIGAAPAEKFAKIIHKVPMLSLANIFSDEEVGEFVARVRRFLGLGADAPLA 122 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + EPKIDG ++RYE G V AA RGDG+ GEDV+A +R I IP L + PEI+EV Sbjct: 123 ISAEPKIDGLSCSLRYEGGYLVQAATRGDGYEGEDVTANVRTIQEIPHQLQGHAPEILEV 182 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY++ DF ALN+ A G+ +ANPRN+A+G LR+L+P R L+FF + G+ Sbjct: 183 RGEVYMTHADFAALNERQEAAGKTIFANPRNSAAGSLRQLDPKVTAGRPLHFFAYAWGEA 242 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE A Q M+ + G PVN ++ ++ ++++Y+++++ R+ L YDIDG+VYKV Sbjct: 243 SEEPADTQMGMVTAFKAFGLPVNPLMQLCHSAEDLIAHYHDIEARRALLDYDIDGVVYKV 302 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQK+LG +R+PRW +HKF ++A T L DI+IQ+GRTG LTPVARLEP+ +GG Sbjct: 303 NSIALQKRLGFVSRAPRWATAHKFPAEKAVTLLRDIEIQVGRTGALTPVARLEPITVGGV 362 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++NATLHNED I +DIR+GD V+++RAG+VIP+++ I+++R DAQ Sbjct: 363 VVSNATLHNEDEIAR-----------KDIRIGDMVMIQRAGDVIPQILGPILDKRPQDAQ 411 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP CP+C S +R+++PKTG RCTGGL C+AQ +ERLKHF SR+AF+IEGL Sbjct: 412 PYEFPQVCPVCGSAAIREIDPKTGTADVVRRCTGGLVCAAQVVERLKHFASRNAFDIEGL 471 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q++ F+ I P DIFTLQ R S K+++ G+G+ SV NL+ +I RR Sbjct: 472 GDKQIEQFYHD----GLIHTPVDIFTLQERDARSLKKLKDREGYGETSVRNLFQAIEARR 527 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +I + RFI++LGIRHVG AR A+ + ++ + + +++ L V G Sbjct: 528 HIPVNRFIYALGIRHVGETNARRAARAFGTFDALR-AVASRAEEGSEERSELTNVEGFGP 586 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++A+AI +F+ N ++ LL++V+P S + K +VFTG L+ + R +A Sbjct: 587 VVAEAIFDFFHEQHNQDVLDGLLEQVTPEP-MEAVAKESPVAGKTVVFTGALEHMTREEA 645 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + +LGA V+ +S+KTD+++ G GSKL KA +L ++ ++EE +L L+ + Sbjct: 646 KAQAERLGAKVAGSVSKKTDLVVAGPGAGSKLAKAAELNIETISEEDWLKLVGE 699 >gi|254470147|ref|ZP_05083551.1| DNA ligase, NAD-dependent [Pseudovibrio sp. JE062] gi|211960458|gb|EEA95654.1| DNA ligase, NAD-dependent [Pseudovibrio sp. JE062] Length = 722 Score = 631 bits (1626), Expect = e-178, Method: Composition-based stats. Identities = 317/716 (44%), Positives = 466/716 (65%), Gaps = 5/716 (0%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 IEAL+ E+A EL L + I+ +D+ Y+ PI+ D+ YD L+RR A+ FP+L R Sbjct: 10 DIEALNAEEAALELERLARLIAEYDEAYHTQDAPIVDDATYDGLRRRNAALEAKFPELVR 69 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NSI 126 + + P N++GG + K+TH++P LSL+ ++ ED++ FI ++ RF + ++ Sbjct: 70 A---DSPSNRVGGAVAEGFGKITHAVPMLSLDNAFSDEDVQDFIGKVRRFLKYDPLMGAL 126 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 T EPKIDG +++RYE GK VYAA RGDG +GE+V+A I IP+ L +P+++E Sbjct: 127 AVTAEPKIDGLSLSLRYESGKLVYAATRGDGATGENVTANALTIQDIPQELPAGVPDVVE 186 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY+S DF ALN M A G K +ANPRNAA+G LR+LNP TR L FF + G Sbjct: 187 VRGEVYMSHADFAALNARMEANGGKVFANPRNAAAGSLRQLNPEITKTRPLKFFAYAWGD 246 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 SE+ A Q M++ GF +N +++ T ++ Y+ ++ RS L YDIDG+VYK Sbjct: 247 MSEVPADTQMGMVELFGAWGFQINPLMKRCETVEALLKVYHGIEEDRSGLGYDIDGVVYK 306 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD LQ +LG +RSPRW I+HKF ++A T L I+IQ+GRTG LTPVA+LEPV +GG Sbjct: 307 VDRLDLQGRLGFVSRSPRWAIAHKFPAERAFTTLNAIEIQVGRTGALTPVAKLEPVTVGG 366 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHNEDYIKG+ G+ +R +D+RVGD V+++RAG+VIP++VD+ +++R D Sbjct: 367 VVVSNATLHNEDYIKGIGQDGESIRDSKDLRVGDTVIIQRAGDVIPQIVDVDLSKRAEDV 426 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 QP+ FP+ CP+C S +R+ NP +GK+ A RCTGGL C AQ +E+LKHFVSR+AF+IEG Sbjct: 427 QPYEFPTECPVCNSHAIRETNPNSGKVDAVRRCTGGLICPAQAVEKLKHFVSRNAFDIEG 486 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG++Q++ F++ + IR PADIFTL R + S K+ + GFG VS L+++I+ + Sbjct: 487 LGEKQMEAFYEYDMDKGGIRTPADIFTLAERDKVSLNKLRSREGFGAVSARKLFEAIDSK 546 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R I L R IF LGIRHVG A+ LA+ Y S+Q F + ++ + L + +G Sbjct: 547 RQIELNRVIFGLGIRHVGEGNAKLLARAYSSWQGFYDAMIAATDTTSEAYRELNDIDGIG 606 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +A A+VEF+ N+ A+ AL+++++P S + K LVFTG+L+++ R + Sbjct: 607 GTVANALVEFFAEEHNLTALAALMEQITPLDVVVADTSGSPVAGKTLVFTGSLERMSRDE 666 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 A+ LGA VS +S+KTD++I G GSKL KAQ LG+ +++E+ + L+ Sbjct: 667 AKARAESLGAKVSGSVSKKTDLVIAGPKAGSKLTKAQSLGIDVISEDDWFELVGDQ 722 >gi|316933200|ref|YP_004108182.1| NAD-dependent DNA ligase [Rhodopseudomonas palustris DX-1] gi|315600914|gb|ADU43449.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris DX-1] Length = 715 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 305/728 (41%), Positives = 450/728 (61%), Gaps = 27/728 (3%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 +KK I L+ +A+ EL L I HD YYQ P I D++YDAL+RR +AI Sbjct: 3 VKKNPAPDIATLTKAKAKVELMRLRLVIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQ 62 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP+L + P +G KV H++P LSL + +++ +F R+ RF + Sbjct: 63 KFPELV---SASSPTQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVAEFALRVQRFLKL 119 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 D +I EPKIDG +++RYE G+ V AA RGDG +GEDV+A +R I +P L Sbjct: 120 DDVPAI--VAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPNTLKGK 177 Query: 181 I-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238 P E+RGEVY+ K DFLALN G +ANPRN+A+G LR+ + +R L F Sbjct: 178 HIPAACELRGEVYMLKQDFLALNKRQEEAGETVFANPRNSAAGSLRQKDVAVTASRPLKF 237 Query: 239 FVHGLGKT--SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296 F + G+ + Q++MLQ + +GF VN +R +T I+++Y E+ R++LP Sbjct: 238 FAYAWGEMSDYPMEEPTQHKMLQWLDHVGFVVNPLIRPCHTVEEILAFYREIGEQRASLP 297 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 YDIDG+VYKVD Q++LG +RSPRW I+HKFA +QA+T L IDIQ+GRTG +TPVA Sbjct: 298 YDIDGVVYKVDRLDYQERLGFISRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGAMTPVA 357 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 RL+PV +GG ++ NATLHNEDYIKG+ G +R G DIR GD V+V+RAG+VIP++V + Sbjct: 358 RLQPVTVGGVVVQNATLHNEDYIKGIGNDGSPLRDGVDIREGDTVVVQRAGDVIPQIVSV 417 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 ++++R A+P+ FP CP+C S VR+ A RCTG L C AQ +ERLKHFV Sbjct: 418 VLDKRPAGAEPYHFPHKCPVCGSHAVREEGE------AVWRCTGALICPAQAVERLKHFV 471 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 SR AF+I+GLG++Q++ F + ++ PADIFTL+ R + K+E + G+G+ SV Sbjct: 472 SRLAFDIDGLGEKQIELFHER----GWVQEPADIFTLKAR--NAELKLEQLEGYGETSVR 525 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH------ 590 NL+ +I+ RR I L R +F+LGIRHVG A+ LA++Y + F + Sbjct: 526 NLFAAIDARRTIELHRLVFALGIRHVGEGNAKLLARHYGTLDAFLTAMRAAADAQTEEGN 585 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650 ++ + L + +GD++A+A+VEF+ RN+ A++ALL E++ + + + + K Sbjct: 586 TSEAYQDLDNIAGIGDVVAEAVVEFFAEERNVKALDALLAELTEVLPAEQARRDTAVAGK 645 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +VFTG+L K R +A+ +LGA V+ +S+KTD ++ G++ GSKL KA+ LGV ++ Sbjct: 646 TVVFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKAKDLGVTVLT 705 Query: 711 EEQFLFLL 718 E+++L L+ Sbjct: 706 EDEWLALI 713 >gi|166216284|sp|Q6N423|DNLJ_RHOPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 715 Score = 629 bits (1623), Expect = e-178, Method: Composition-based stats. Identities = 302/727 (41%), Positives = 448/727 (61%), Gaps = 27/727 (3%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K + I L+ +A+ EL L EI HD YYQ P I D++YDAL+RR +AI Sbjct: 4 KTKPAPDIATLTKPKAKVELMRLRLEIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQK 63 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP+L + + P +G KV H++P LSL + +++ +F R+ RF + Sbjct: 64 FPELVNA---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVAEFALRVQRFLKLD 120 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 D +I EPKIDG +++RYE G+ V AA RGDG +GEDV+A +R I +P L Sbjct: 121 DVPAI--VAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPNTLKGKH 178 Query: 182 -PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P E+RGEVY+ K DFLALN +ANPRN+A+G LR+ + T +R L FF Sbjct: 179 IPATCELRGEVYMLKQDFLALNKRQEEANETVFANPRNSAAGSLRQKDVTVTASRPLKFF 238 Query: 240 VHGLGKT--SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 + G+ + Q++MLQ + GF VN + ++ +++Y + R++LPY Sbjct: 239 AYAWGEMSDYPMEEPTQHKMLQWLDHAGFVVNPEITLCHSVEDALAFYRRIGEKRASLPY 298 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+VYKVD Q++LG +RSPRW I+HKFA +QA+T L IDIQ+GRTG +TPVAR Sbjct: 299 DIDGVVYKVDRLDYQERLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGAMTPVAR 358 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 L+PV +GG ++ NATLHNEDYIKG+ G+ +R G DIR GD V+V+RAG+VIP++V ++ Sbjct: 359 LQPVTVGGVVVQNATLHNEDYIKGIGNDGEPIRDGVDIREGDTVVVQRAGDVIPQIVSVV 418 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 + +R A+P+ FP CP+C S VR+ A RCTG L C AQ +ERLKHFVS Sbjct: 419 MEKRPAGAEPYHFPHKCPVCGSHAVREEGE------AVWRCTGALICPAQAVERLKHFVS 472 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R AF+I+GLG++Q++ F + ++ PADIFTL+ R + K+E + G+G+ SV N Sbjct: 473 RLAFDIDGLGEKQIELFHER----GWVQEPADIFTLKAR--NAELKLEQLEGYGETSVRN 526 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH------N 591 L+ +I+ RR+I L R +F+LGIRHVG A+ LA++Y + F + Sbjct: 527 LFAAIDARRSIELHRLVFALGIRHVGEGNAKLLARHYGTLDAFLSAMRAAADAQTEEGNT 586 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651 ++ + L + +GD++A+A+VEF+ RNI A++ALL E++ + + + + K Sbjct: 587 SEAYQDLDNIAGIGDVVAEAVVEFFAEERNIKALDALLAELTEVLPAEQARRDTAVAGKT 646 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 +VFTG+L K R +A+ +LGA V+ +S+KTD ++ G++ GSKL KA+ LGV ++ E Sbjct: 647 VVFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKAKDLGVTVLTE 706 Query: 712 EQFLFLL 718 +++L L+ Sbjct: 707 DEWLALI 713 >gi|75675255|ref|YP_317676.1| NAD-dependent DNA ligase [Nitrobacter winogradskyi Nb-255] gi|123773282|sp|Q3STR7|DNLJ_NITWN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|74420125|gb|ABA04324.1| NAD-dependent DNA ligase [Nitrobacter winogradskyi Nb-255] Length = 716 Score = 629 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 307/726 (42%), Positives = 459/726 (63%), Gaps = 22/726 (3%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K + P+++L+ QAR E L EI H++ YYQ P + D+ YDAL+RR +AI Sbjct: 4 KSKTPPPVDSLTRSQARVEHKRLALEIETHNERYYQQDAPTVSDATYDALQRRLEAIEAR 63 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FPDL + + P +G KV H++P LSL ++ ++ +F+ RI RF + Sbjct: 64 FPDLVTA---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFSDAEVAEFVERIRRFLKLG 120 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 D+ EPKIDG +++RYE G V AA RGDG +GEDV+A +R I +P L+ + Sbjct: 121 ADDMPAIVAEPKIDGLSLSLRYENGDLVRAATRGDGFTGEDVTANVRTIADVPHKLNGHN 180 Query: 182 PEI-IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 E+RGEVY+ K DFLALN + G +ANPRN+A+G LR+ + + +R L FF Sbjct: 181 IPTACELRGEVYMLKEDFLALNKKQQEAGDTVFANPRNSAAGSLRQKDVSITASRPLKFF 240 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ ++ A+ Q +ML+ +R +GF VN ++ ++ ++++Y + R+TL YDI Sbjct: 241 AYAWGEMTDRPAETQNDMLEWLRDVGFIVNPLIQLCHSVDEVLAFYRRIGEQRATLGYDI 300 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD Q++LG +RSPRW I+HKFA +QA T L IDIQ+GRTG +TPVARLE Sbjct: 301 DGVVYKVDRLDWQERLGFVSRSPRWAIAHKFAAEQAMTILRGIDIQVGRTGAMTPVARLE 360 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG ++ NATLHNEDYI+GL G+ +R G D+R+GD V+V+RAG+VIP+VV +I+ Sbjct: 361 PVTVGGVVVQNATLHNEDYIRGLGNDGQPIRDGIDLRIGDTVVVQRAGDVIPQVVSVIIE 420 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R +A+ + FP CPIC S VR+ A RCTG L C AQ +ERLKHFVSR Sbjct: 421 KRPANAKRYEFPDRCPICGSHAVREEGE------AVRRCTGALICPAQAVERLKHFVSRL 474 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+I+GLG++Q+ F+ + P DIFTLQ R + K+ + G+GDVSV NL+ Sbjct: 475 AFDIDGLGEKQIQEFYDD----GLVMHPVDIFTLQERDARAENKLRDRDGYGDVSVRNLF 530 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------HNND 593 +I+ RR I L R IF+LGIRHVG A+ LA++Y S ++F + A ++++ Sbjct: 531 AAIDARRRIELNRLIFALGIRHVGEGNAKLLARHYGSIESFRSAMTEAAAAQTEAGNDSE 590 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653 + L + +GDI+A A+VEF+ PRN+ A+ LL+E+ + + S + K +V Sbjct: 591 AYADLTNIGGIGDIVADAVVEFFAEPRNVKALNDLLEEIEV-LPVAQARSDSAVAGKTVV 649 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 FTG+L+K R +A+ ++GA S+ +S+KTD+++ G GSKL+ A++ GVK+++E++ Sbjct: 650 FTGSLEKFTRDEAKASAERVGAKTSSSVSKKTDLVVAGPGAGSKLKDAEKFGVKVISEDE 709 Query: 714 FLFLLQ 719 +L L++ Sbjct: 710 WLKLIE 715 >gi|154252874|ref|YP_001413698.1| DNA ligase, NAD-dependent [Parvibaculum lavamentivorans DS-1] gi|190359267|sp|A7HVV8|DNLJ_PARL1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|154156824|gb|ABS64041.1| DNA ligase, NAD-dependent [Parvibaculum lavamentivorans DS-1] Length = 710 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 304/712 (42%), Positives = 448/712 (62%), Gaps = 21/712 (2%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 ++ L++E+A +EL L EI HD YYQ P I D+EYD L+RR +AI +P+L R Sbjct: 16 DVDHLTLEEAPEELERLAAEIEKHDKLYYQKDAPRISDAEYDTLRRRNEAIEARYPELVR 75 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + P +++G + KV H +P LSL ++ ED+R F RI RF K+++ + Sbjct: 76 E---DSPSHRVGAQPADGFGKVVHKVPMLSLSNAFDDEDVRDFALRIRRFLNLKEEDILP 132 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186 T EPKIDG +RYEKGKFV A RGDG GE+V+ ++ I IP L P+++E Sbjct: 133 ITAEPKIDGLSAALRYEKGKFVMGATRGDGREGENVTENLKTIGDIPAELKGKNIPDVVE 192 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY+S DF ALN+ G+ +ANPRNAA+G LR+L+ +R L FF + G+ Sbjct: 193 VRGEVYMSHEDFAALNERQREAGKPVFANPRNAAAGSLRQLDAKITASRPLRFFAYTWGE 252 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S++ A Q ++ R GF VN + +T ++ +Y++++ R+TL YDIDG+VYK Sbjct: 253 MSDLPADTQSGVMDAFRKWGFTVNPLFGRCDTVEALIDFYHDIEERRATLGYDIDGVVYK 312 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD Q +LG +RSPRW ++HKF +QA T L I+IQ+GRTG LTPVARL PV +GG Sbjct: 313 VDRLDWQNRLGFVSRSPRWALAHKFPAEQAMTVLEKIEIQVGRTGALTPVARLTPVTVGG 372 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHN D I+ L +R GD V+V+RAG+VIP++V ++ +R Sbjct: 373 VVVSNATLHNADEIERL-----------GVRPGDTVVVQRAGDVIPQIVRVV-EDRPRGK 420 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + F FP CP C S VR++NPKTGKL A RCTGGL C AQ +ERL+HFVSR+AF+IEG Sbjct: 421 KKFVFPDTCPECGSHAVREVNPKTGKLDAVARCTGGLVCPAQAVERLRHFVSRNAFDIEG 480 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG++Q+ FF+ I+ P DIFTL R S K+++ G+G S L+D+I+ R Sbjct: 481 LGEKQIAAFFED----GLIKKPDDIFTLAARDAKSLKKLKDREGWGATSARKLFDAIDAR 536 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R + L+RFIF LGIRHVG AR LA+ Y + +F +++ ++ + L+ + VG Sbjct: 537 REVELDRFIFGLGIRHVGETNARLLARSYGTLDHFEEQMRAAADREDEAYAELLSIDGVG 596 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +++A++IV+F+ N ++ L + + ++ SS + K +VFTG+L+K+ R + Sbjct: 597 EVLAESIVDFFAEKHNREVLDGLREAGVKGVPLPKQETSSPVAGKTVVFTGSLEKMTRSE 656 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 A+ QLGA V+ +S KTDI++ G + GSKL KA++LG++I++E+Q++ L Sbjct: 657 AKARAEQLGAKVAGSVSAKTDILVAGADAGSKLAKARELGIEILDEDQWIEL 708 >gi|166216283|sp|Q07PR9|DNLJ_RHOP5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 715 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 307/727 (42%), Positives = 453/727 (62%), Gaps = 25/727 (3%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K + + + L+ +A+ EL L EI HD YYQ P + D++YDAL+RR + I H Sbjct: 4 KSKTVPDVATLTKAKAKVELMRLALEIERHDKAYYQEDAPKVSDADYDALRRRLEEIEHK 63 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP+L P K+G KV H++P LSL ++ +++ +F+ R+ RF Sbjct: 64 FPELVSGA---SPSQKVGAAPARGFAKVQHAVPMLSLGNAFSDDEVAEFLQRVRRFLNLG 120 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 D+ EPKIDG +++RYE+G+ V AA RGDG GEDV+A +R + IP L N Sbjct: 121 DEIP-AIVAEPKIDGLSLSLRYEQGELVRAATRGDGSVGEDVTANVRTLKDIPHTLKGNR 179 Query: 182 -PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P E+RGEVY+ K+DFLALN + G P+ANPRN+A+G LR+ + +R L FF Sbjct: 180 IPAACELRGEVYMLKSDFLALNKKQEEAGEAPFANPRNSAAGSLRQKDVAITASRPLKFF 239 Query: 240 VHGLGKTSEIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 + G+ S + Q++ML + GF VN + ++ + +Y + R+ LPYD Sbjct: 240 AYAWGEFSGETPERTQHDMLGWLDHAGFVVNPEITLCHSVDDALVFYRRIGEERAALPYD 299 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKVD Q +LG R+PRW I+HKFA +QA+T L I+IQ+GRTG LTPVARL Sbjct: 300 IDGVVYKVDRLDWQARLGFAGRAPRWAIAHKFAAEQATTILEKIEIQVGRTGALTPVARL 359 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 PV +GG ++ NATLHNEDYIKG+ G+ +R GRDIRVGD V+++RAG+VIP+VVD+++ Sbjct: 360 APVTVGGVVVQNATLHNEDYIKGVGNDGQPLREGRDIRVGDTVIIQRAGDVIPQVVDVVL 419 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ++R DA P+ FP CP+C S VR+ RCTG L C AQ +ERLKHFVSR Sbjct: 420 DKRPADAVPYEFPQACPVCGSHAVREDGE------VVRRCTGALICPAQAVERLKHFVSR 473 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 AF+I+GLG++Q++ F + ++ P DIFTL + + +T K+E + G+G+ SV NL Sbjct: 474 LAFDIDGLGEKQIELFHER----GWVKEPVDIFTL--KTRNATLKLEELEGYGETSVRNL 527 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------HNN 592 + +I+ RR I L R IF+LGIRHVG A+ LA++Y + F + A + + Sbjct: 528 FAAIDARRTIELHRLIFALGIRHVGEGNAKLLARHYGTIDAFLGAMRAAAAGQTEEGNTS 587 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652 + + L + +GDI+A+A+VEF+ RN+ A++ALL E+ + + S + K + Sbjct: 588 EAYQDLDNIGGIGDIVAEAVVEFFAEERNVEALDALLGELDEVLPAAQVKRDSAVAGKTV 647 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 VFTG+L K R +A+ +LGA V+ +S+KTD ++ G++ GSKL KA++LGV +++E+ Sbjct: 648 VFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKTDFVVAGEDAGSKLTKARELGVSVLSED 707 Query: 713 QFLFLLQ 719 ++L L+Q Sbjct: 708 EWLALIQ 714 >gi|115524134|ref|YP_781045.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisA53] gi|115518081|gb|ABJ06065.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisA53] Length = 730 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 307/727 (42%), Positives = 453/727 (62%), Gaps = 25/727 (3%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K + + + L+ +A+ EL L EI HD YYQ P + D++YDAL+RR + I H Sbjct: 19 KSKTVPDVATLTKAKAKVELMRLALEIERHDKAYYQEDAPKVSDADYDALRRRLEEIEHK 78 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP+L P K+G KV H++P LSL ++ +++ +F+ R+ RF Sbjct: 79 FPELVSGA---SPSQKVGAAPARGFAKVQHAVPMLSLGNAFSDDEVAEFLQRVRRFLNLG 135 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 D+ EPKIDG +++RYE+G+ V AA RGDG GEDV+A +R + IP L N Sbjct: 136 DEIP-AIVAEPKIDGLSLSLRYEQGELVRAATRGDGSVGEDVTANVRTLKDIPHTLKGNR 194 Query: 182 -PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P E+RGEVY+ K+DFLALN + G P+ANPRN+A+G LR+ + +R L FF Sbjct: 195 IPAACELRGEVYMLKSDFLALNKKQEEAGEAPFANPRNSAAGSLRQKDVAITASRPLKFF 254 Query: 240 VHGLGKTSEIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 + G+ S + Q++ML + GF VN + ++ + +Y + R+ LPYD Sbjct: 255 AYAWGEFSGETPERTQHDMLGWLDHAGFVVNPEITLCHSVDDALVFYRRIGEERAALPYD 314 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKVD Q +LG R+PRW I+HKFA +QA+T L I+IQ+GRTG LTPVARL Sbjct: 315 IDGVVYKVDRLDWQARLGFAGRAPRWAIAHKFAAEQATTILEKIEIQVGRTGALTPVARL 374 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 PV +GG ++ NATLHNEDYIKG+ G+ +R GRDIRVGD V+++RAG+VIP+VVD+++ Sbjct: 375 APVTVGGVVVQNATLHNEDYIKGVGNDGQPLREGRDIRVGDTVIIQRAGDVIPQVVDVVL 434 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ++R DA P+ FP CP+C S VR+ RCTG L C AQ +ERLKHFVSR Sbjct: 435 DKRPADAVPYEFPQACPVCGSHAVREDGE------VVRRCTGALICPAQAVERLKHFVSR 488 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 AF+I+GLG++Q++ F + ++ P DIFTL + + +T K+E + G+G+ SV NL Sbjct: 489 LAFDIDGLGEKQIELFHER----GWVKEPVDIFTL--KTRNATLKLEELEGYGETSVRNL 542 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------HNN 592 + +I+ RR I L R IF+LGIRHVG A+ LA++Y + F + A + + Sbjct: 543 FAAIDARRTIELHRLIFALGIRHVGEGNAKLLARHYGTIDAFLGAMRAAAAGQTEEGNTS 602 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652 + + L + +GDI+A+A+VEF+ RN+ A++ALL E+ + + S + K + Sbjct: 603 EAYQDLDNIGGIGDIVAEAVVEFFAEERNVEALDALLGELDEVLPAAQVKRDSAVAGKTV 662 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 VFTG+L K R +A+ +LGA V+ +S+KTD ++ G++ GSKL KA++LGV +++E+ Sbjct: 663 VFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKTDFVVAGEDAGSKLTKARELGVSVLSED 722 Query: 713 QFLFLLQ 719 ++L L+Q Sbjct: 723 EWLALIQ 729 >gi|254488738|ref|ZP_05101943.1| DNA ligase, NAD-dependent [Roseobacter sp. GAI101] gi|214045607|gb|EEB86245.1| DNA ligase, NAD-dependent [Roseobacter sp. GAI101] Length = 706 Score = 622 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 303/716 (42%), Positives = 441/716 (61%), Gaps = 15/716 (2%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 + I ++ LS +QA +EL L ++ + YY P I D+EYD LKRR I FP Sbjct: 3 EHIAVQDLSKDQAAEELRRLSGLLAQANRQYYAEDAPQISDAEYDCLKRRNTEIETRFPS 62 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 L R+ + P +IG + KV H +P LSL + ED+ +F RI ++ D Sbjct: 63 LKRA---DSPTEQIGATPSEGFSKVRHEVPMLSLGNAFEDEDVVEFDGRIRKYLGLPSDA 119 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 + FT EPKIDG +++RYE G V AA RGDG GE+V+A R I TIP+ L + P++ Sbjct: 120 DLDFTAEPKIDGLSLSLRYENGLLVQAATRGDGAVGENVTANARTIQTIPKKL-DSAPDV 178 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 IE+RGEVY+S +DF ALN G K +ANPRNAA+G LR+L+ +R L FF + Sbjct: 179 IEIRGEVYMSHDDFDALNARQGERGGKLFANPRNAAAGSLRQLDAEITRSRPLKFFAYAW 238 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G SE + Q E +++M +GF N ++ ++ Y ++++ R+TL YDIDG+V Sbjct: 239 GALSEPLGQTQSEAIKRMENMGFCTNPLTELCSSVAEMIDQYRKIEAQRATLGYDIDGVV 298 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YKV++ +LQ++LG R+ +PRW I+HKF + A T L DI IQ+GRTG L+PVARL+PV + Sbjct: 299 YKVNDLALQERLGFRSTTPRWAIAHKFPAELAWTTLEDITIQVGRTGALSPVARLKPVTV 358 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +++NATLHNEDYIKG+D+ G +R G+DIRVGD V V RAG+VIPK+ D+ ++ R Sbjct: 359 GGVVVSNATLHNEDYIKGVDSKGNQIRDGKDIRVGDWVQVYRAGDVIPKIADVDLSRRPS 418 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 D+ PF FP+ CP C S +R+ A RC GGL C AQ +E+LKHFVSR AF+I Sbjct: 419 DSVPFDFPTICPECGSDAIREEG------DAVRRCMGGLVCPAQAVEKLKHFVSRAAFDI 472 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +GLG +Q++ F+ I PADIFTLQ R + +++N G+G+ S T L+ +I+ Sbjct: 473 DGLGAKQVEQFYTD----GWIAEPADIFTLQARYGSGVQQLKNREGWGEKSATKLFQAID 528 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 +R I L R IF+LGIRHVG + +A +Y ++ F + N + W LI V Sbjct: 529 DKRTIPLARLIFALGIRHVGEAASNLIALHYGTWSAFITAMENAREASGPAWDDLISVDG 588 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 VG ++AQ++V + +++ L+ E+S S ++ K +VFTGTL+K+ R Sbjct: 589 VGQVMAQSLVSTFAQEAERASIDRLVAELSIQDATRPDTQGSPVDGKTVVFTGTLEKMTR 648 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A+ +LGA VS +S KTDI++ G GSK +KA +LG++I++E+ +L L+ Sbjct: 649 AEAKARAERLGAKVSGSVSAKTDILVAGPGAGSKAKKAAELGIEILDEDAWLDLIA 704 >gi|254719452|ref|ZP_05181263.1| NAD-dependent DNA ligase LigA [Brucella sp. 83/13] gi|265984457|ref|ZP_06097192.1| NAD-dependent DNA ligase LigA [Brucella sp. 83/13] gi|306839229|ref|ZP_07472046.1| DNA ligase, NAD-dependent [Brucella sp. NF 2653] gi|264663049|gb|EEZ33310.1| NAD-dependent DNA ligase LigA [Brucella sp. 83/13] gi|306405776|gb|EFM62038.1| DNA ligase, NAD-dependent [Brucella sp. NF 2653] Length = 719 Score = 622 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 340/724 (46%), Positives = 476/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDSPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P ++G + V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYEDGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPSVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLALNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ +R D Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDTVIVQRAGDVIPQIVDVVLEKRSAD 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A PF FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 AVPFQFPHECPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA SIR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALSIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + ++ W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|217979603|ref|YP_002363750.1| DNA ligase, NAD-dependent [Methylocella silvestris BL2] gi|254781370|sp|B8ETN6|DNLJ_METSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|217504979|gb|ACK52388.1| DNA ligase, NAD-dependent [Methylocella silvestris BL2] Length = 700 Score = 621 bits (1601), Expect = e-175, Method: Composition-based stats. Identities = 299/715 (41%), Positives = 447/715 (62%), Gaps = 22/715 (3%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 PI+A+++ QAR+E S L EI+ HD YY+ P + D+EYD L+RR + AFP+LA Sbjct: 5 PIDAMTLAQARREHSRLGAEIAAHDARYYREDAPTVSDAEYDRLRRRYGELESAFPELA- 63 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ K+G + K+ H IP LSL +++ ++ F+ R+ RF + S+ Sbjct: 64 --SPDSLTKKVGAAPSEKFAKIRHRIPMLSLGNVFSEAEVEDFVARVRRFLGLPTEASLA 121 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 T EPKIDG ++R+E G+FV AA RGDG GEDV+A +R I IP L PE++EV Sbjct: 122 ITAEPKIDGLSCSLRFENGEFVQAATRGDGFEGEDVTANVRTIAEIPARLKGEPPEVLEV 181 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY++ DF A+N G+ +ANPRNAA+G LR+L+P R L+FF + G+ Sbjct: 182 RGEVYMTHADFAAMNVRQQEAGKPLFANPRNAAAGSLRQLDPNITAGRPLHFFAYAWGEI 241 Query: 247 -SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 A Q M+ + G PVN + ++ +++ Y ++ R+ L YDIDG+VYK Sbjct: 242 LPAPPAGTQMGMVAAFKSYGLPVNPLMVLCHSAEELIAKYRSIEEKRAALGYDIDGVVYK 301 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD LQ++LG +RSPRW ++HKF +QA+T L DI+IQ+GRTG LTPVARL+PV +GG Sbjct: 302 VDSLVLQERLGFVSRSPRWAVAHKFPAEQATTVLRDIEIQVGRTGALTPVARLDPVTVGG 361 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + NATLHNED I +D+R+GD V ++RAG+VIP+V+ +++N+R +A Sbjct: 362 VTVANATLHNEDEIAR-----------KDVRIGDTVRIQRAGDVIPQVLGVVLNKRPAEA 410 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 +P+ FP CPIC S +R+++ KTG RCTGGL C AQ +ERLKHF SR+A +IEG Sbjct: 411 KPYVFPDHCPICGSAAIREIDEKTGVADVVRRCTGGLICPAQAIERLKHFASRNALDIEG 470 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG +Q++ F+ I PADIFTL+ R + + K+++ G+G+ S NL+ +I +R Sbjct: 471 LGDKQIEQFYHD----GLITKPADIFTLEARDKAALKKLKDREGYGETSTRNLFRAIEQR 526 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R +L RFI++LGIRHVG AR LA+++ S+ + A ++ + + VG Sbjct: 527 RAPALNRFIYALGIRHVGETNARRLARHFGSFSALRE-TGRAAAPGSEARAEINNIEGVG 585 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +++A+A+ +F+ P N A++ALL V+P E + + K +VFTG L+++ R + Sbjct: 586 EVVAEAVADFFAEPHNEEALDALLAHVNPQP-MEEIVSDTPVAGKTVVFTGALERMTRDE 644 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ +LGA V+A +S+KTD++I G GSKL KA +LGV+ ++EE +L L+ + Sbjct: 645 AKAMAERLGAKVAASVSKKTDLVIAGPGAGSKLAKAAELGVETISEEDWLKLVGR 699 >gi|299131914|ref|ZP_07025109.1| DNA ligase, NAD-dependent [Afipia sp. 1NLS2] gi|298592051|gb|EFI52251.1| DNA ligase, NAD-dependent [Afipia sp. 1NLS2] Length = 706 Score = 621 bits (1600), Expect = e-175, Method: Composition-based stats. Identities = 312/725 (43%), Positives = 449/725 (61%), Gaps = 33/725 (4%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 K+ + P+E L+ QA+ EL+ L EIS HD+ YYQ P + D++YD L++R AI F Sbjct: 6 KKAVTPVENLTKAQAKVELTRLALEISMHDERYYQKDAPTVSDADYDKLRQRLSAIEERF 65 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P+L + P K+G + + + K+ H++P LSL ++ ED+ +F TR+ RF Sbjct: 66 PELVAK---DSPSQKVGAQPSRAFAKIRHAVPMLSLGNAFSDEDVAEFATRVRRFLNLGA 122 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-I 181 D + EPKIDG +++RYE G+ V AA RGDG GEDV+A +R I +P L + Sbjct: 123 DEPLVIVAEPKIDGLSLSLRYENGELVSAATRGDGFEGEDVTANVRTIKDVPHTLRGKGV 182 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240 P I EVRGEVY+ + DFLALN + +ANPRN+A+G LR+ N +R L FF Sbjct: 183 PAICEVRGEVYMMREDFLALNKKQAEADDTIFANPRNSAAGSLRQKNVEVTASRPLKFFA 242 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 + G+ SE+ A Q+EM++ + GF VN + +++YY E+++ R++LPYDID Sbjct: 243 YAWGEMSEMPAPTQFEMVKWLHKAGFVVNPRMTLCRDVEALLTYYREIETERASLPYDID 302 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+VYKVD Q +LG +RSPRW I+HKFA +QA+T L IDIQ+GRTG LTPVARL P Sbjct: 303 GVVYKVDRLDWQNRLGFISRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVARLTP 362 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V +GG ++ NATLHNED I +DIR GD V+++RAG+VIP+VV ++ + Sbjct: 363 VTVGGVVVQNATLHNEDEIAR-----------KDIREGDTVVIQRAGDVIPQVVSVVTEK 411 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R +A+ +SFP CPIC S VR+ + A RCTG L C AQ +ERLKHFVSR A Sbjct: 412 RRKNAKSYSFPHKCPICGSHAVREEDE------AVRRCTGALICPAQAVERLKHFVSRLA 465 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 F+IEGLG +Q+ F+ I P DIFTLQ+R + K+++ G+GDVSV NL+ Sbjct: 466 FDIEGLGDKQIQEFYDD----GLIMHPVDIFTLQKRDARAVKKLKDREGYGDVSVNNLFA 521 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------HNNDD 594 +I+ RR I L R IF+LGIRHVG A+ LA++Y S +N + A + ++ Sbjct: 522 AIDARRRIELNRLIFALGIRHVGEGNAKLLARHYGSIENLRAAMAEAAAAQTEEGNTSEA 581 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654 + L + +GDI+A A+VEF+ RN+ A++ LL E+ + S + K +VF Sbjct: 582 YADLNNIGGIGDIVADAVVEFFAEKRNVKALDELLAEIEVLPAE-QVRTDSAVAGKTVVF 640 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TG+L K R +A+ +LGA VS +S+KTD ++ G+ GSKL KA++LGV ++ E+++ Sbjct: 641 TGSLTKFTRDEAKAQAERLGAKVSGSVSKKTDYVVAGEEAGSKLTKARELGVAVLTEDEW 700 Query: 715 LFLLQ 719 L L++ Sbjct: 701 LKLIE 705 >gi|150397271|ref|YP_001327738.1| NAD-dependent DNA ligase LigA [Sinorhizobium medicae WSM419] gi|166216245|sp|A6UB73|DNLJ_SINMW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|150028786|gb|ABR60903.1| DNA ligase, NAD-dependent [Sinorhizobium medicae WSM419] Length = 717 Score = 621 bits (1600), Expect = e-175, Method: Composition-based stats. Identities = 343/712 (48%), Positives = 488/712 (68%), Gaps = 4/712 (0%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E ++ +A +EL+ L E+S HD Y+ P I D++YDALKRR D I FP L R Sbjct: 7 PVEQMTEAEAAEELAFLAAELSRHDMLYHGKDDPEISDADYDALKRRNDLIEERFPALIR 66 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + P K+G +L+ V H+ P LSL+ ++ ED R F+ IYRF + D SI Sbjct: 67 E---DSPSQKVGAAPSLTFAPVVHARPMLSLDNSFSDEDARAFVAGIYRFLGRLPDGSIA 123 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 FT+EPKIDG +++RYE + V AA RGDG +GE+V+A +R I IP+ L P+++E+ Sbjct: 124 FTVEPKIDGLSMSLRYENRRLVTAATRGDGTTGENVTANVRTIGMIPQRLPAEAPDVVEI 183 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGE+Y++K+DF ALN EM A GR Y NPRN ASG LR+L+ +R L FF + G+ Sbjct: 184 RGEIYMAKSDFAALNAEMAAQGRPLYVNPRNTASGSLRQLDAKVTASRRLRFFAYAWGEM 243 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 S + A Q M++ + GFPVN +++ + ++ +Y+ ++ R L YDIDG+VYKV Sbjct: 244 SAMPADTQLGMVETFKAWGFPVNPLMQRFFSADELLEHYHHIERERPELDYDIDGVVYKV 303 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ LQ +LG R+RSPRW +HKF ++A TRL IDIQ+GRTG LTPVARLEP+ +GG Sbjct: 304 DQLDLQARLGFRSRSPRWATAHKFPAERAFTRLKGIDIQVGRTGALTPVARLEPITVGGV 363 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++TNATLHNEDYI+G+ +G+ +R GRDIR+GD V+V+RAG+VIP++VD++++ER + Sbjct: 364 VVTNATLHNEDYIRGIGNTGEPIREGRDIRIGDMVIVQRAGDVIPQIVDVVMDERPEGTE 423 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP+ CPIC S VRD+N KTGK+ A RCTGG C AQ +E LKHFVSR+AF+IEGL Sbjct: 424 PYRFPTSCPICGSHAVRDINEKTGKVDAVRRCTGGFVCRAQAVEHLKHFVSRNAFDIEGL 483 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q++FFF+SED IR DIFTL+RRQ++S TK+ENI GFG VSV LY++IN RR Sbjct: 484 GSKQIEFFFESEDETLRIRTAPDIFTLERRQESSLTKLENIDGFGKVSVRKLYEAINARR 543 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +I L RFI++LGIRHVG A+ LA+ Y +Y++F + + D W L + +G+ Sbjct: 544 SIGLHRFIYALGIRHVGETTAKLLARSYGTYEHFGAAMTEAGGFSGDAWNELNSIDGIGE 603 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++A+AIVEFY+ PRN+ + LL+EV+P S + K +VFTG+L+K+ R +A Sbjct: 604 VVARAIVEFYKEPRNLKVLSDLLEEVTPERAEMPVATDSPVAGKTVVFTGSLEKMTRDEA 663 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTDI++ G GSKL+KA++LG++ M+E+++L L+ Sbjct: 664 KAKAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGLQTMDEDEWLALI 715 >gi|239832299|ref|ZP_04680628.1| DNA ligase, NAD-dependent [Ochrobactrum intermedium LMG 3301] gi|239824566|gb|EEQ96134.1| DNA ligase, NAD-dependent [Ochrobactrum intermedium LMG 3301] Length = 734 Score = 620 bits (1598), Expect = e-175, Method: Composition-based stats. Identities = 342/725 (47%), Positives = 474/725 (65%), Gaps = 19/725 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 IP+E L+ +A EL L +EI++HD+ Y+ +P I D+EYDALKRR DAI FP L Sbjct: 19 IPVEKLTEPEAVSELGRLAREIAHHDELYHANDRPEISDAEYDALKRRNDAIEARFPHLV 78 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R+ + P ++G V H+ P LSL ++ ED+R F+ +YRF + DNSI Sbjct: 79 RT---DSPSLRVGTAPVSKFAPVVHARPMLSLGNAFSDEDVRDFVGSVYRFLGQLPDNSI 135 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++E Sbjct: 136 AFTAEPKIDGLSMSIRYENGVLVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPSVVE 195 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY++K+DFLALN++M A G++ Y NPRN A+G LR+L+ +R L FF + G+ Sbjct: 196 VRGEVYMAKSDFLALNEQMAAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGE 255 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S++ A Q M++ R GFPVN ++ + ++++Y + R TL YDIDG+VYK Sbjct: 256 MSDMPADTQMGMVEMFREWGFPVNPLTKRLHGADELLAHYRAIGLERPTLDYDIDGVVYK 315 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD LQ +LG R+RSPRW I+HKF +QA+T L IDIQ+GRTG LTPVARLEP+ +GG Sbjct: 316 VDRLDLQTRLGFRSRSPRWAIAHKFPAEQATTILRGIDIQVGRTGALTPVARLEPITVGG 375 Query: 366 ALITNATLHNEDYIKGLDASGKVMR-GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 ++TNATLHNEDYIKG+ G+ +R DIR+GD V+V+RAG+VIP++VD+I+ +R D Sbjct: 376 VVVTNATLHNEDYIKGIGLKGERIRADEHDIRLGDTVIVQRAGDVIPQIVDVILEKRPVD 435 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A PF FP CP+C S VR+ A +RCTGGL C+AQ +ER++HFVSR+AF+IE Sbjct: 436 AVPFHFPHECPVCGSHAVREEGE------AVYRCTGGLTCAAQAVERIRHFVSRNAFDIE 489 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +ED + I+ PADIFTLQ+RQ S K+ENI GFG SV LYD+IN Sbjct: 490 GLGEKQVEFFFHAEDDSLKIKSPADIFTLQKRQAGSLKKLENIEGFGATSVKKLYDAIND 549 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596 RR I+L RF+F LGIRHVG A+ A+ YLSY F + N+ W Sbjct: 550 RREIALNRFLFGLGIRHVGEVNAKRFARSYLSYAAFEKAALEAVPPKEGDRTDKGNEAWQ 609 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 LI V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 610 DLIAVEGIGSIVAEAVVDFYAEPHNREVLAALLAEVTPLDEAARVATGSPVEGKTVVFTG 669 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +SRKTD+++ G GSKL KA +LG+++++E+ + Sbjct: 670 SLERMSRDEAKAMAERYGAKTAGSVSRKTDLVVAGPGAGSKLAKASELGIEVIDEDAWFK 729 Query: 717 LLQQY 721 L+ + Sbjct: 730 LVGEE 734 >gi|92116846|ref|YP_576575.1| DNA ligase, NAD-dependent [Nitrobacter hamburgensis X14] gi|123083742|sp|Q1QNT2|DNLJ_NITHX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91799740|gb|ABE62115.1| DNA ligase, NAD-dependent [Nitrobacter hamburgensis X14] Length = 714 Score = 619 bits (1597), Expect = e-175, Method: Composition-based stats. Identities = 312/726 (42%), Positives = 457/726 (62%), Gaps = 24/726 (3%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K + P+++L+ QA+ E L EI H++ YYQ P + D+ YDAL++R +AI Sbjct: 4 KPKTPPPVDSLTRAQAKIEHKRLALEIETHNERYYQKDAPTVSDAAYDALRQRLEAIEAR 63 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FPDL + N P +G KV H++P LSL ++ E++ +F+ RI RF + Sbjct: 64 FPDLITA---NSPTQTVGAAPARGFAKVQHAVPMLSLGNAFSDEEVAEFVERIQRFLKLG 120 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 D+ EPKIDG +++RYE G+ V AA RGDG +GEDV+A +R I +P L Sbjct: 121 PDDIPAIVAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPHNLRGRN 180 Query: 182 PEI-IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 E+RGEVY+ K DFLALN + G +ANPRN+A+G LR+ + +R L FF Sbjct: 181 IPTACELRGEVYMLKTDFLALNKKQEDAGDTVFANPRNSAAGSLRQKDVAITASRPLKFF 240 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ ++ A Q++ML+ ++ +GF VN + N+ ++ +Y ++ R++L YDI Sbjct: 241 AYAWGEMTDRPADTQHDMLEWLKDVGFKVNPLIELCNSVEKVLKFYRKIGEQRASLGYDI 300 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD Q++LG +RSPRW I+HKFA +QA+T L IDIQ+GRTG +TPVARLE Sbjct: 301 DGVVYKVDRLDWQERLGFVSRSPRWAIAHKFAAEQATTILKGIDIQVGRTGAMTPVARLE 360 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV IGG ++ NATLHNEDYIKG+ G+ +R G D+RVGD V+V+RAG+VIP+VV ++++ Sbjct: 361 PVTIGGVVVQNATLHNEDYIKGIGNDGQPIRDGVDLRVGDTVVVQRAGDVIPQVVSVVID 420 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R AQP++FP CPIC S VR+ A RCTG L C AQ +ERLKHFVSR Sbjct: 421 KRPNSAQPYAFPHTCPICGSHAVREEGE------AVRRCTGALICPAQAVERLKHFVSRL 474 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+I+GLG++Q+ F + I+ PADIFTL+ R K+E + GFG+VSV NL+ Sbjct: 475 AFDIDGLGEKQIQEFHER----GWIKEPADIFTLRER--NPKIKLEELEGFGEVSVRNLF 528 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD----- 594 +I+ RR I L R IF+LGIRHVG A+ LA++Y F ++ A DD Sbjct: 529 AAIDARRTIELNRLIFALGIRHVGEGNAKLLARHYGGIDAFRAAMSEAAAAQTDDGNASE 588 Query: 595 -WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653 + L + +GDI+A A+VEF+ RN+ A+ LL+E+ +N S + K +V Sbjct: 589 AYADLNNISGIGDIVADAVVEFFAETRNVKALNDLLEEIEVLPVAQARN-DSAVAGKTVV 647 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 FTG+L+K R +A+ ++GA VS +S+KTD+++ G GSKL+ A++ GV++++E++ Sbjct: 648 FTGSLEKFTRDEAKASAERMGAKVSGSVSKKTDLVVAGPGAGSKLKDAEKHGVQVISEDE 707 Query: 714 FLFLLQ 719 +L L++ Sbjct: 708 WLKLIE 713 >gi|146342488|ref|YP_001207536.1| DNA ligase [Bradyrhizobium sp. ORS278] gi|166215400|sp|A4YZJ3|DNLJ_BRASO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146195294|emb|CAL79319.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Bradyrhizobium sp. ORS278] Length = 716 Score = 619 bits (1597), Expect = e-175, Method: Composition-based stats. Identities = 294/721 (40%), Positives = 447/721 (61%), Gaps = 12/721 (1%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K +Q + + L+ QA+ E L E+ HD YYQ P I D+ YD L+RR +AI Sbjct: 6 KSKQSVDVADLTKAQAKVEWKRLALELETHDRLYYQEDAPKISDAAYDELRRRFNAIEKR 65 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP+L + P +G + KV H++P LSL+ + ED+R F+ RI RF + Sbjct: 66 FPELV---SRDSPSQTVGAAPSGRFKKVRHAVPMLSLDNAFAEEDVRDFVGRIARFLKLA 122 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 +D+ I F+ EPKIDG +++RYE G+ V AA RGDG GEDV+A IR + +P+ L Sbjct: 123 EDDRIAFSAEPKIDGLSMSLRYEGGQLVTAATRGDGAEGEDVTANIRTLKDVPQKLHGRN 182 Query: 182 -PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P+I E+RGEVY++K FLALN+ G +ANPRN+A+G LR+ +PT +R L FF Sbjct: 183 LPDICEIRGEVYMTKQAFLALNERQKEAGDTIFANPRNSAAGSLRQKDPTITASRPLGFF 242 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G S + A+ Q M++ GF N + ++ +++++ ++ R+ L YDI Sbjct: 243 AYAWGDMSAMPAETQSGMIKWFEHCGFTTNPLTKLCHSVEELIAFHRAIEEQRAELDYDI 302 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD Q++LG +R+PRW I+HKF ++A T L DI+IQ+GRTG TPV +LE Sbjct: 303 DGVVYKVDRIDWQERLGFVSRTPRWGIAHKFPAERAMTVLKDIEIQVGRTGSFTPVGKLE 362 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG ++ N TLHNEDYIKG+ G+V+R GRDIR+GD V+++RAG+VIP+VVD++++ Sbjct: 363 PVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDVLID 422 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R DA+ F+FP CP V G+ + RCTG AC Q++E LK F SR Sbjct: 423 KRPADAEVFAFPRKCPCPLHTDVVREETAAGEEGSRARCTGEFACPYQKIEHLKLFASRR 482 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+I+GLG++Q+ FFF ++ PADIFTLQ+R + K+E + G+G+ SV NL+ Sbjct: 483 AFDIDGLGEKQIQFFFDE----GWVKEPADIFTLQKR--NAKLKLEEVEGYGETSVRNLF 536 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 ++I RR ++LERFI++LG+R+VG A +LA+ Y S++ F + + + + Sbjct: 537 NAIEARREMALERFIYALGMRYVGETTALALARGYGSWEAFHDACLKVANGDEEAIAEMD 596 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 + +G+ + +++ ++ N VE L +EV K +S I K +VFTGTL+ Sbjct: 597 ALDQIGETVIKSVAAYFGEDHNRGIVERLTREVKILDAEKPKR-NSPIATKTVVFTGTLE 655 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 K+ R +A+ +LGA VS +S+KTD ++ G GSKL+ A++ GVK++ E+++L L+ Sbjct: 656 KMTRDEAKATAERLGAKVSGSVSKKTDYVVAGPGAGSKLKDAEKHGVKVLTEDEWLQLIG 715 Query: 720 Q 720 + Sbjct: 716 E 716 >gi|222086432|ref|YP_002544966.1| DNA ligase, NAD-dependent [Agrobacterium radiobacter K84] gi|254781247|sp|B9JH39|DNLJ_AGRRK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|221723880|gb|ACM27036.1| DNA ligase, NAD-dependent [Agrobacterium radiobacter K84] Length = 717 Score = 619 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 339/690 (49%), Positives = 471/690 (68%), Gaps = 4/690 (0%) Query: 30 YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89 +D Y+ P I D+EYDALKRR DAI FP L R+ + P ++G + + V Sbjct: 29 RNDALYHGNDAPEISDAEYDALKRRNDAIEARFPALVRA---DSPSRRVGAAPSETFMPV 85 Query: 90 THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149 H+ P LSL+ ++ ED++ F+ +YRF + D SI FT EPKIDG ++IRYE G+ V Sbjct: 86 VHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAFTAEPKIDGLSMSIRYENGRMV 145 Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209 AA RGDG +GE+V+A IR I IP+ L P ++E+RGEVY++K+DFLALN +M A G Sbjct: 146 SAATRGDGTTGENVTANIRTIKEIPQTLPAGAPAVVEIRGEVYMAKSDFLALNAQMEAEG 205 Query: 210 RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268 ++ Y NPRN A+G LR+L+ +R L FF + G+ S++ A Q+ M+Q GFPV Sbjct: 206 KQSYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMSDMPADTQFGMVQAFGEWGFPV 265 Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 N +++ N+ I+++Y+E+ R L YDIDG+VYKVD LQ +LG R+RSPRW +H Sbjct: 266 NPLMKRLNSVADILAHYDEIGLQRPDLDYDIDGVVYKVDSLELQARLGFRSRSPRWATAH 325 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388 KF +QA TRLLDIDIQ+GRTG LTPVARLEP+ +GG ++TNATLHN DYIKG+ G+ Sbjct: 326 KFPAEQALTRLLDIDIQVGRTGALTPVARLEPITVGGVVVTNATLHNADYIKGIGNKGEP 385 Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448 +R GRDIR+GD V+V+RAG+VIP++VD+++ +R + + FP CP+C S VRD+N K Sbjct: 386 IRDGRDIRIGDMVIVQRAGDVIPQIVDVVLEKREASSVAYEFPKTCPVCGSHAVRDINEK 445 Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508 TGK+ A RCTGG C AQ E LKHFVSR+A++IEGLG +Q+DFFF+S+DPA +R Sbjct: 446 TGKVDAVTRCTGGFICRAQATEHLKHFVSRNAYDIEGLGSKQIDFFFESDDPALQVRTAP 505 Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 DIFTL+RRQQ+S +K+ENI GFG VSV+ LY +IN+RR+I+L RFIF+LGIRHVG A+ Sbjct: 506 DIFTLERRQQSSLSKLENIDGFGKVSVSKLYAAINERRDIALHRFIFALGIRHVGETTAK 565 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 LA+ Y +Y+ F + D W L + VG+++A+A+VEFY+ PRN+ + L Sbjct: 566 LLARSYGTYEAFEAGMKEAAPLAGDAWNDLNNIEGVGEVVARAVVEFYKEPRNVEVISKL 625 Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 L EV P S + K +VFTG+L+K R +A+ LGA VS +S+KTDI+ Sbjct: 626 LDEVRPQEAEQPTTSGSPVVGKTVVFTGSLEKFTRDEAKAKAESLGAKVSGSVSKKTDIV 685 Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + G GSKL+KA++ V++M E+++L L+ Sbjct: 686 VAGPGAGSKLDKAREFNVQVMTEDEWLELI 715 >gi|260892973|ref|YP_003239070.1| DNA ligase, NAD-dependent [Ammonifex degensii KC4] gi|260865114|gb|ACX52220.1| DNA ligase, NAD-dependent [Ammonifex degensii KC4] Length = 672 Score = 618 bits (1594), Expect = e-175, Method: Composition-based stats. Identities = 254/708 (35%), Positives = 380/708 (53%), Gaps = 45/708 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 LS E+A++ + L +EI+YHD YY P+I D+EYD L A+ AFP+ P Sbjct: 5 LSKEEAKRRIEELRREIAYHDYRYYVLDSPVISDAEYDRLVLELMALEEAFPEFI---TP 61 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++GG V H +P LSL + EDLR F R+ + + +E Sbjct: 62 NSPTQRVGGAPREGFPTVRHLVPMLSLANAFEPEDLRDFDRRVREAL---PGEKVEYVVE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG +++ Y G+FV A RGDG GEDV+ +R I +IP + P +IEVRGE Sbjct: 119 PKIDGLAVSLLYRDGEFVQGATRGDGEVGEDVTPNLRTIRSIPLRFLKDAPPLIEVRGEA 178 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 ++ K F+ LN+ G P+ANPRNAA+G +R+L+P R L+FF +G+G I Sbjct: 179 FMPKEAFVKLNERREEAGEPPFANPRNAAAGSIRQLDPRVTAGRKLDFFAYGIGHYEGIS 238 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +E+L + GF VN R ++ ++ Y +S R LPY IDG+V KV+ Sbjct: 239 FSTHWEVLDWLAEQGFRVNEHRRLFSSIDEVIDYVLSWQSKRFDLPYVIDGMVVKVNSLE 298 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q +LG +SPRW ++ KF ++A T+L I+I +GRTG+LTPVA +PV I G ++ Sbjct: 299 SQARLGATMKSPRWAVAFKFPPEEAVTKLRRIEISVGRTGVLTPVAVFDPVQIAGTTVSR 358 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED I+ +DIRVGD ++V +AG+VIP+VV + R + Q F Sbjct: 359 ATLHNEDLIR-----------EKDIRVGDYIVVHKAGDVIPEVVRSLPERRTGNEQIFRM 407 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C ++ +R+ + ++C A+ E + HF SR+A +I GLGK Sbjct: 408 PDHCPACGAKTIREEGEVAVR-------CPNISCPARLKESIFHFASRNAMDIRGLGKVL 460 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ ++ ADI+ L+R + G S NL I + ++ L Sbjct: 461 VEQLVDR----GLVKNVADIYFLRREDL------LRLERMGPKSTANLLREIEESKSRGL 510 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R IF LGIRHVG A+ LA+++ S AQ L +P +G IA Sbjct: 511 NRLIFGLGIRHVGERAAKLLAEHFGSIDRLAQATE----------EELTEIPEIGPKIAA 560 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ F+ PRN+ +E L + E ++ K VFTG L+ R +A+ + Sbjct: 561 SVRAFFAEPRNLEVIERLREAGVRLETTKEVREEGPLKGKVFVFTGALKSFTREEAKALI 620 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +LG V++ +SR+TD ++VG+NPGSK ++A++LG+K++NEE+F LL Sbjct: 621 ERLGGRVASSVSRRTDYVVVGENPGSKYDRARELGIKMLNEEEFKRLL 668 >gi|306843233|ref|ZP_07475843.1| DNA ligase, NAD-dependent [Brucella sp. BO2] gi|306286556|gb|EFM58135.1| DNA ligase, NAD-dependent [Brucella sp. BO2] Length = 719 Score = 618 bits (1593), Expect = e-174, Method: Composition-based stats. Identities = 334/724 (46%), Positives = 472/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDSPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P ++G + V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLVLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDTVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LY++I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYEAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + ++ W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus str. psy62] gi|254040849|gb|ACT57645.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus str. psy62] Length = 731 Score = 617 bits (1592), Expect = e-174, Method: Composition-based stats. Identities = 731/731 (100%), Positives = 731/731 (100%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH Sbjct: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK Sbjct: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN Sbjct: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV 240 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV Sbjct: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV 240 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID Sbjct: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP Sbjct: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE Sbjct: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA Sbjct: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD Sbjct: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR Sbjct: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK Sbjct: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ Sbjct: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 Query: 721 YNTTLRIHDDD 731 YNTTLRIHDDD Sbjct: 721 YNTTLRIHDDD 731 >gi|306844319|ref|ZP_07476911.1| DNA ligase, NAD-dependent [Brucella sp. BO1] gi|306275391|gb|EFM57132.1| DNA ligase, NAD-dependent [Brucella sp. BO1] Length = 719 Score = 617 bits (1591), Expect = e-174, Method: Composition-based stats. Identities = 337/724 (46%), Positives = 474/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDSPEISDAAYDALKRRNEAIEARFPALV 63 Query: 67 RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P ++G + V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLALNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L DIDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRDIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYEFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + ++ W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDVVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|254714455|ref|ZP_05176266.1| NAD-dependent DNA ligase LigA [Brucella ceti M644/93/1] gi|254717353|ref|ZP_05179164.1| NAD-dependent DNA ligase LigA [Brucella ceti M13/05/1] gi|261219183|ref|ZP_05933464.1| NAD-dependent DNA ligase LigA [Brucella ceti M13/05/1] gi|261322244|ref|ZP_05961441.1| NAD-dependent DNA ligase LigA [Brucella ceti M644/93/1] gi|260924272|gb|EEX90840.1| NAD-dependent DNA ligase LigA [Brucella ceti M13/05/1] gi|261294934|gb|EEX98430.1| NAD-dependent DNA ligase LigA [Brucella ceti M644/93/1] Length = 719 Score = 617 bits (1591), Expect = e-174, Method: Composition-based stats. Identities = 333/724 (45%), Positives = 473/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P ++G + V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG S+ LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSMKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596 RR I+L RF+F LGIR+VG A+ LA+ YLSY F + ++ W Sbjct: 535 RREIALHRFLFGLGIRYVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|237815820|ref|ZP_04594817.1| DNA ligase, NAD-dependent [Brucella abortus str. 2308 A] gi|237789118|gb|EEP63329.1| DNA ligase, NAD-dependent [Brucella abortus str. 2308 A] Length = 725 Score = 617 bits (1590), Expect = e-174, Method: Composition-based stats. Identities = 335/724 (46%), Positives = 473/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 10 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 69 Query: 67 RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P ++G + V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 70 RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 126 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 127 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 186 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 187 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 246 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 247 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 306 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 307 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 366 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 367 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 426 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 427 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 480 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 481 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 540 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + ++ W Sbjct: 541 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 600 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 601 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 660 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 661 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 720 Query: 717 LLQQ 720 L+ + Sbjct: 721 LVGE 724 >gi|23502291|ref|NP_698418.1| NAD-dependent DNA ligase LigA [Brucella suis 1330] gi|62290313|ref|YP_222106.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 1 str. 9-941] gi|82700237|ref|YP_414811.1| NAD-dependent DNA ligase LigA [Brucella melitensis biovar Abortus 2308] gi|161619368|ref|YP_001593255.1| NAD-dependent DNA ligase LigA [Brucella canis ATCC 23365] gi|163843675|ref|YP_001628079.1| NAD-dependent DNA ligase LigA [Brucella suis ATCC 23445] gi|189024547|ref|YP_001935315.1| NAD-dependent DNA ligase LigA [Brucella abortus S19] gi|225627871|ref|ZP_03785908.1| DNA ligase, NAD-dependent [Brucella ceti str. Cudo] gi|254689615|ref|ZP_05152869.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 6 str. 870] gi|254694105|ref|ZP_05155933.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 3 str. Tulya] gi|254697757|ref|ZP_05159585.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 2 str. 86/8/59] gi|254704678|ref|ZP_05166506.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 3 str. 686] gi|254708093|ref|ZP_05169921.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M163/99/10] gi|254710462|ref|ZP_05172273.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis B2/94] gi|254730646|ref|ZP_05189224.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 4 str. 292] gi|256031956|ref|ZP_05445570.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M292/94/1] gi|256113974|ref|ZP_05454757.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 3 str. Ether] gi|256160155|ref|ZP_05457849.1| NAD-dependent DNA ligase LigA [Brucella ceti M490/95/1] gi|256257864|ref|ZP_05463400.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 9 str. C68] gi|256369836|ref|YP_003107347.1| DNA ligase [Brucella microti CCM 4915] gi|260169093|ref|ZP_05755904.1| NAD-dependent DNA ligase LigA [Brucella sp. F5/99] gi|260546856|ref|ZP_05822595.1| DNA ligase [Brucella abortus NCTC 8038] gi|260566074|ref|ZP_05836544.1| DNA ligase [Brucella suis bv. 4 str. 40] gi|260755142|ref|ZP_05867490.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 6 str. 870] gi|260758361|ref|ZP_05870709.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 4 str. 292] gi|260762187|ref|ZP_05874530.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 2 str. 86/8/59] gi|260884154|ref|ZP_05895768.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 9 str. C68] gi|261214403|ref|ZP_05928684.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 3 str. Tulya] gi|261315595|ref|ZP_05954792.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M163/99/10] gi|261318033|ref|ZP_05957230.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis B2/94] gi|261755371|ref|ZP_05999080.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 3 str. 686] gi|261758598|ref|ZP_06002307.1| DNA ligase [Brucella sp. F5/99] gi|265989064|ref|ZP_06101621.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M292/94/1] gi|265995315|ref|ZP_06107872.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 3 str. Ether] gi|265998527|ref|ZP_06111084.1| NAD-dependent DNA ligase LigA [Brucella ceti M490/95/1] gi|297248700|ref|ZP_06932418.1| DNA ligase, NAD-dependent [Brucella abortus bv. 5 str. B3196] gi|75496544|sp|Q57C89|DNLJ_BRUAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|81752355|sp|Q8FZQ3|DNLJ_BRUSU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123768412|sp|Q2YLZ6|DNLJ_BRUA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190359236|sp|A9M679|DNLJ_BRUC2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190359237|sp|B0CHK8|DNLJ_BRUSI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781269|sp|B2S6P4|DNLJ_BRUA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|23348266|gb|AAN30333.1| DNA ligase, NAD-dependent [Brucella suis 1330] gi|62196445|gb|AAX74745.1| LigA, DNA ligase, NAD-dependent [Brucella abortus bv. 1 str. 9-941] gi|82616338|emb|CAJ11395.1| BRCT domain:NAD-dependent DNA ligase:ATP/GTP-binding site motif A (P-loop):Zn-finger in NAD-dependent DNA ligase, C4 type:NAD [Brucella melitensis biovar Abortus 2308] gi|161336179|gb|ABX62484.1| DNA ligase, NAD-dependent [Brucella canis ATCC 23365] gi|163674398|gb|ABY38509.1| DNA ligase, NAD-dependent [Brucella suis ATCC 23445] gi|189020119|gb|ACD72841.1| DNA ligase [Brucella abortus S19] gi|225617876|gb|EEH14921.1| DNA ligase, NAD-dependent [Brucella ceti str. Cudo] gi|255999999|gb|ACU48398.1| DNA ligase [Brucella microti CCM 4915] gi|260095906|gb|EEW79783.1| DNA ligase [Brucella abortus NCTC 8038] gi|260155592|gb|EEW90672.1| DNA ligase [Brucella suis bv. 4 str. 40] gi|260668679|gb|EEX55619.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 4 str. 292] gi|260672619|gb|EEX59440.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 2 str. 86/8/59] gi|260675250|gb|EEX62071.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 6 str. 870] gi|260873682|gb|EEX80751.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 9 str. C68] gi|260916010|gb|EEX82871.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 3 str. Tulya] gi|261297256|gb|EEY00753.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis B2/94] gi|261304621|gb|EEY08118.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M163/99/10] gi|261738582|gb|EEY26578.1| DNA ligase [Brucella sp. F5/99] gi|261745124|gb|EEY33050.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 3 str. 686] gi|262553151|gb|EEZ08985.1| NAD-dependent DNA ligase LigA [Brucella ceti M490/95/1] gi|262766428|gb|EEZ12217.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 3 str. Ether] gi|264661261|gb|EEZ31522.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M292/94/1] gi|297175869|gb|EFH35216.1| DNA ligase, NAD-dependent [Brucella abortus bv. 5 str. B3196] Length = 719 Score = 617 bits (1590), Expect = e-174, Method: Composition-based stats. Identities = 335/724 (46%), Positives = 473/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P ++G + V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + ++ W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|83953544|ref|ZP_00962265.1| DNA ligase, NAD-dependent [Sulfitobacter sp. NAS-14.1] gi|83841489|gb|EAP80658.1| DNA ligase, NAD-dependent [Sulfitobacter sp. NAS-14.1] Length = 706 Score = 617 bits (1590), Expect = e-174, Method: Composition-based stats. Identities = 293/714 (41%), Positives = 430/714 (60%), Gaps = 15/714 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 ++ LS E+A+ EL+ L + + Y+ P + D+EYD LKRR AI FP L Sbjct: 5 TALQELSEEEAKAELARLADLLGRANAAYHTQDAPDLSDAEYDRLKRRNQAIEERFPRLK 64 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R+ + P +K+G KV H + LSL + ED+ F RI ++ + Sbjct: 65 RA---DSPSDKVGAAPAEGFGKVRHDVAMLSLGNAFEDEDVVDFDARIRKYLGLPSGTPL 121 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 FT EPKIDG +++RYE G+ V AA RGDG GE+V+A R I TIP + P ++E Sbjct: 122 AFTAEPKIDGLSLSLRYENGELVQAATRGDGAVGENVTANARTIDTIPTRIQGA-PALLE 180 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY+ +DF ALN A G K +ANPRNAA+G LR+L+ R L FF + G Sbjct: 181 VRGEVYMRHHDFDALNARQTANGGKTFANPRNAAAGSLRQLDAEITRARPLAFFAYAWGA 240 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S A Q+ ++++ GF N + ++++Y +++ R+TL YDIDG+VYK Sbjct: 241 LSAPLADTQFHAIERLSAFGFDTNPLTTLCDGPQEMIAHYRKIEEQRATLGYDIDGVVYK 300 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ +LQ +LG R+ +PRW I+HKF + A TRL DI IQ+GRTG L+PVARL+PV +GG Sbjct: 301 VNDLALQDRLGFRSTTPRWAIAHKFPAELAWTRLEDITIQVGRTGALSPVARLKPVTVGG 360 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHNEDYIKGLD+ G +R G+DIRVGD V V RAG+VIPK+ D+ + +R D+ Sbjct: 361 VVVSNATLHNEDYIKGLDSKGASIRDGKDIRVGDWVQVYRAGDVIPKIADVDLGKRPEDS 420 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + + +P+ CP C S +R+ A RCTGGL C AQ +E+LKHFVSR AF+I+G Sbjct: 421 EAYVYPTTCPECGSDAIREEG------DAVRRCTGGLICPAQAVEKLKHFVSRAAFDIDG 474 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG +Q++ F+ I PADIFTL+ R + +++N G+G+ S L+ +I + Sbjct: 475 LGAKQVEQFYAD----GWIAEPADIFTLKARYGSGMQQLKNREGWGEKSADKLFQAIEDK 530 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R I L R IF+LGIRHVG + +A++Y S+ F + + + + W LI V VG Sbjct: 531 RKIPLSRLIFALGIRHVGEAASNLIAQHYGSWTAFEAAMGHAKSGDGPAWDDLIGVDGVG 590 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++AQ++V + +++ L+ E+S S + K +VFTGTL+K+ R + Sbjct: 591 QVMAQSLVSTFAQEAERASIDRLVTELSVQDVARPDTEGSPVAGKTVVFTGTLEKMTRAE 650 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+ +LGA VS +S KTDI++ G GSK +KA LG++ ++E+ +L L+ Sbjct: 651 AKARAERLGAKVSGSVSAKTDILVAGPGAGSKAKKAADLGIQTLDEDGWLALID 704 >gi|254702142|ref|ZP_05163970.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 5 str. 513] gi|261752711|ref|ZP_05996420.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 5 str. 513] gi|261742464|gb|EEY30390.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 5 str. 513] Length = 719 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 335/724 (46%), Positives = 472/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P ++G + V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + ++ W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTVGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|225852902|ref|YP_002733135.1| NAD-dependent DNA ligase LigA [Brucella melitensis ATCC 23457] gi|256263616|ref|ZP_05466148.1| DNA ligase [Brucella melitensis bv. 2 str. 63/9] gi|254781270|sp|C0RE59|DNLJ_BRUMB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|225641267|gb|ACO01181.1| DNA ligase, NAD-dependent [Brucella melitensis ATCC 23457] gi|263093668|gb|EEZ17673.1| DNA ligase [Brucella melitensis bv. 2 str. 63/9] gi|326409444|gb|ADZ66509.1| NAD-dependent DNA ligase LigA [Brucella melitensis M28] gi|326539150|gb|ADZ87365.1| DNA ligase, NAD-dependent [Brucella melitensis M5-90] Length = 719 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 335/724 (46%), Positives = 473/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P ++G + V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLTLNAQMAAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + ++ W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|148560656|ref|YP_001259312.1| NAD-dependent DNA ligase LigA [Brucella ovis ATCC 25840] gi|166215401|sp|A5VRG5|DNLJ_BRUO2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148371913|gb|ABQ61892.1| DNA ligase, NAD-dependent [Brucella ovis ATCC 25840] Length = 719 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 334/724 (46%), Positives = 472/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P ++G + V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPVDTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + ++ W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|256255361|ref|ZP_05460897.1| NAD-dependent DNA ligase LigA [Brucella ceti B1/94] gi|261222562|ref|ZP_05936843.1| NAD-dependent DNA ligase LigA [Brucella ceti B1/94] gi|260921146|gb|EEX87799.1| NAD-dependent DNA ligase LigA [Brucella ceti B1/94] Length = 719 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 334/724 (46%), Positives = 472/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P ++G + V H+ P LSL+ ++ ED+R F+ + RF + D+S Sbjct: 64 RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVCRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + ++ W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|15965917|ref|NP_386270.1| NAD-dependent DNA ligase LigA [Sinorhizobium meliloti 1021] gi|307308227|ref|ZP_07587936.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti BL225C] gi|307319694|ref|ZP_07599119.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti AK83] gi|81634276|sp|Q92NM8|DNLJ_RHIME RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|15075186|emb|CAC46743.1| Probable DNA ligase [Sinorhizobium meliloti 1021] gi|306894625|gb|EFN25386.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti AK83] gi|306901225|gb|EFN31831.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti BL225C] Length = 717 Score = 616 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 335/690 (48%), Positives = 469/690 (67%), Gaps = 4/690 (0%) Query: 30 YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89 HD Y+ P I D++YDALKRR D I FP L R + P K+G +L+ V Sbjct: 29 RHDMLYHGKDAPEISDADYDALKRRNDLIEERFPVLVRE---DSPSRKVGAAPSLTFAPV 85 Query: 90 THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149 H+ P LSL+ ++ ED R F+ +YRF K D SI FT EPKIDG +++RYE + V Sbjct: 86 VHARPMLSLDNTFSDEDARAFVAGVYRFLGKLPDGSIAFTAEPKIDGLSMSLRYENRRLV 145 Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209 AA RGDG +GE+V+A +R I IP+ L + P+++E+RGE+Y++K+DF ALN EM A G Sbjct: 146 TAATRGDGTTGENVTANVRTIGMIPQTLPADAPDVVEIRGEIYMAKSDFAALNAEMAAQG 205 Query: 210 RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268 R Y NPRN ASG LR+L+ R L FF + G+ S + A Q M++ + GFPV Sbjct: 206 RPLYVNPRNTASGSLRQLDAKVTANRKLRFFAYAWGEMSAMPADTQLGMVETFKAWGFPV 265 Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 N +++ + ++ +Y+ ++ R L YDIDG+VYKVD LQ +LG R+RSPRW +H Sbjct: 266 NPLMQRFFSADELLEHYHHIERERPDLDYDIDGVVYKVDRLDLQARLGFRSRSPRWATAH 325 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388 KF +QA TRL IDIQ+GRTG LTPVARLEP+ +GG ++TNATLHNEDYI+G+ +G+ Sbjct: 326 KFPAEQAFTRLKGIDIQVGRTGALTPVARLEPITVGGVVVTNATLHNEDYIRGVGNTGEP 385 Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448 +R GRD+R+GD V+V+RAG+VIP++VD++++ER A+P+ FP+ CPIC S VRD+N K Sbjct: 386 IRDGRDVRIGDMVIVQRAGDVIPQIVDVVMDERPEGAEPYRFPTTCPICGSHAVRDINEK 445 Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508 TGK+ A RCTGG C AQ +E LKHFVSR+AF+IEGLG +Q++FFF+SED IR Sbjct: 446 TGKVDAVRRCTGGFVCRAQAVEHLKHFVSRNAFDIEGLGSKQIEFFFESEDENLRIRTAP 505 Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 +IFTL+RRQ+ S K+EN GFG VSV LY++IN RR+I+L R I++LGIRHVG A+ Sbjct: 506 EIFTLERRQEASLNKLENTDGFGKVSVRKLYEAINARRSIALHRLIYALGIRHVGETTAK 565 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 LA+ Y SY++F + + D W L + +G+++A+AIVEFY+ PRN+ V L Sbjct: 566 LLARSYGSYEHFGAAMTEAAGFSGDAWNELNSIDGIGEVVARAIVEFYKEPRNLKVVSEL 625 Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 L+EV+P S + K +VFTG+L+K+ R +A+ LGA V+ +S+KTDI+ Sbjct: 626 LQEVTPESAELPVATDSPVAGKTVVFTGSLEKMTREEAKAKAESLGAKVAGSVSKKTDIV 685 Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + G GSKL+KA++LGV+ M+E+++L L+ Sbjct: 686 VAGPGAGSKLDKARELGVQTMDEDEWLALI 715 >gi|17986872|ref|NP_539506.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str. 16M] gi|256045051|ref|ZP_05447952.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str. Rev.1] gi|260565350|ref|ZP_05835834.1| DNA ligase [Brucella melitensis bv. 1 str. 16M] gi|265991477|ref|ZP_06104034.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str. Rev.1] gi|81852173|sp|Q8YI56|DNLJ_BRUME RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|17982511|gb|AAL51770.1| nad-dependent DNA ligase [Brucella melitensis bv. 1 str. 16M] gi|260151418|gb|EEW86512.1| DNA ligase [Brucella melitensis bv. 1 str. 16M] gi|263002261|gb|EEZ14836.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str. Rev.1] Length = 719 Score = 616 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 335/724 (46%), Positives = 472/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P ++G V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RD---DSPSRRVGAAPALAIFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + ++ W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFKKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|256061478|ref|ZP_05451622.1| NAD-dependent DNA ligase LigA [Brucella neotomae 5K33] gi|261325484|ref|ZP_05964681.1| NAD-dependent DNA ligase LigA [Brucella neotomae 5K33] gi|261301464|gb|EEY04961.1| NAD-dependent DNA ligase LigA [Brucella neotomae 5K33] Length = 719 Score = 615 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 334/724 (46%), Positives = 471/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P ++G + V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY+ K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMVKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +ED A IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDSALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + ++ W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|323136604|ref|ZP_08071685.1| DNA ligase, NAD-dependent [Methylocystis sp. ATCC 49242] gi|322397921|gb|EFY00442.1| DNA ligase, NAD-dependent [Methylocystis sp. ATCC 49242] Length = 705 Score = 615 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 299/718 (41%), Positives = 463/718 (64%), Gaps = 24/718 (3%) Query: 1 MKKRQL---IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDA 57 M K+ + ++ LS +AR E + L ++I+ +D+ YY+ P++ D+EYDA +RR +A Sbjct: 1 MTKKPASRPLSVDELSPAEARAEHARLGEDIARYDEAYYREDAPLVPDAEYDAARRRYEA 60 Query: 58 IAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF 117 + AFP+L P K+G + + KV H++P LSL +++ E++ F+ R+ RF Sbjct: 61 LEKAFPELV---TPESLTRKVGAKPSEKFAKVKHAVPMLSLGNVFSDEEVFDFVARVRRF 117 Query: 118 WQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177 + + FT EPKIDG ++RYE G+ AA RGDG+ GEDV+A IR + IP L Sbjct: 118 LGLGERARLAFTAEPKIDGLSCSLRYEGGRLAQAATRGDGYEGEDVTANIRTLREIPHKL 177 Query: 178 SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYL 236 + P+++EVRGEVY++ DF ALN+ A G+ P+ANPRNAA+G LR+L+P R L Sbjct: 178 HGDAPDVLEVRGEVYMTHADFAALNERQTAAGKPPFANPRNAAAGSLRQLDPKITAGRPL 237 Query: 237 NFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296 +FF +G G+ SE+ + Q+ +L+ LG VN R + ++++Y +++ R+TL Sbjct: 238 HFFAYGWGEASELPGETQWSVLEAFGRLGLKVNPLTRLCDGAEEMLAHYRAIEARRATLG 297 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 YDIDG+VYKVD+ SLQ++LG +R+PRW +HKF ++A+T L DI+IQ+GRTG LTPVA Sbjct: 298 YDIDGVVYKVDDISLQERLGFVSRAPRWAAAHKFPAERATTILRDIEIQVGRTGALTPVA 357 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 RLEPV +GG +++NATLHNED I +DIRVGD V+V+RAG+VIP++V++ Sbjct: 358 RLEPVTVGGVVVSNATLHNEDEIAR-----------KDIRVGDTVVVQRAGDVIPQIVEV 406 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 + +R A+P+ FP CP C S +R+++ KTG+ RCTG L C AQ +ERLKHF Sbjct: 407 VTEKRPHGAKPYHFPHVCPRCGSAALREIDEKTGEADVVRRCTGSLVCPAQAVERLKHFA 466 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 SR+AF+IEGLG +Q+++F+ I+ +DIFTL+ R + S TKI+N GFG+ SV Sbjct: 467 SRNAFDIEGLGDRQIEYFYDE----GLIKTASDIFTLEERDRASLTKIKNREGFGETSVR 522 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 NL+ +I RR I + RF+++LGIRHVG AR LA+++ +++ + + Sbjct: 523 NLFAAIEARRTIPINRFLYALGIRHVGETNARRLARHFGDFESLRETAREA-DPGTEARA 581 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 + + VG ++A+A+ +F+ P N ++ALL +V+ E SS + K +VFTG Sbjct: 582 RIDSIDGVGPVVAEALHDFFAEPHNEKELDALLSQVTLEP-MPEIASSSPVAGKTVVFTG 640 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 L+++ R +A+ + GA V+A +S+KTD+++ G GSKL KAQ+LG+++++E+++ Sbjct: 641 ALERLTRDEAKAQAERFGAKVAASVSKKTDLVVAGPGAGSKLAKAQELGIEVISEDEW 698 >gi|209884394|ref|YP_002288251.1| DNA ligase, NAD-dependent [Oligotropha carboxidovorans OM5] gi|254781382|sp|B6JB45|DNLJ_OLICO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|209872590|gb|ACI92386.1| DNA ligase, NAD-dependent [Oligotropha carboxidovorans OM5] Length = 706 Score = 615 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 303/726 (41%), Positives = 442/726 (60%), Gaps = 33/726 (4%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K+ L ++ L+ QA+ E L EI+ HD+ YYQ P + D+ YD+L++R +A+ Sbjct: 5 SKKPLPSVDQLTKAQAKVEHKRLALEIAMHDERYYQKDAPTVSDAAYDSLRQRLNAVEAR 64 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP+L + + P K+G + + + K+ H++P LSL ++ E++ +F+ R+ RF Sbjct: 65 FPELVTT---DSPSQKVGAQPSRAFAKIRHAVPMLSLGNAFSDEEVAEFVARVRRFLNLG 121 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 D + EPKIDG +++RYE G+ V AA RGDG GEDV+A +R I +P L Sbjct: 122 ADEPLAVVAEPKIDGLSLSLRYENGELVNAATRGDGFEGEDVTANVRTIKDVPHKLKGKN 181 Query: 182 -PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P + EVRGEVY+ + DFL LN + G +ANPRN+A+G LR+ N +R L FF Sbjct: 182 IPAVCEVRGEVYMLREDFLTLNKKQADSGDTIFANPRNSAAGSLRQKNVAITASRPLKFF 241 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ S + A Q+EM++ GF VN + ++ YY E+++ R+ L YDI Sbjct: 242 AYAWGEMSAMPATTQFEMVKWFEKAGFAVNPRMILCRDVEALLRYYREIETERAQLSYDI 301 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD Q +LG +RSPRW I+HKFA +QA+T L IDIQ+GRTG LTPVARL Sbjct: 302 DGVVYKVDRLDWQTRLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVARLA 361 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 V +GG ++ NATLHNED I +DIR GD V+++RAG+VIP+VV ++ + Sbjct: 362 AVTVGGVVVQNATLHNEDEIAR-----------KDIREGDTVVIQRAGDVIPQVVSVVTD 410 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R A+P+SFP CP+C S VR+ A RCTG L C AQ +ERLKHFVSR Sbjct: 411 KRPKHAKPYSFPHVCPVCGSHAVREEGE------AVRRCTGALICPAQAVERLKHFVSRL 464 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+IEGLG +Q+ F+ ++ I P DIFTL +R +T K+++ G+GDVSV NL+ Sbjct: 465 AFDIEGLGDKQIHEFYDAK----LIMHPVDIFTLAKRDAHATDKLKDREGYGDVSVRNLF 520 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN------ND 593 +I+ RR I L R IF+LGIRHVG A+ LA++Y + +NF + A ++ Sbjct: 521 AAIDARRRIELNRLIFALGIRHVGEGNAKLLARHYGTIENFRAAMAEAAAAQTEEGNPSE 580 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653 + L + VGDI+A A+VEF+ RN+ A+ LL E+ + S + K +V Sbjct: 581 AYADLNAIGGVGDIVADAVVEFFAEERNVKALNELLHEIEVLPAE-QVRADSAVAGKTVV 639 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 FTG+L K R +A+ +LGA VS +S+KTD ++ G+ GSKL KA++LGV ++ E++ Sbjct: 640 FTGSLTKFTREEAKAQAERLGAKVSGSVSKKTDYVVAGEEAGSKLTKARELGVAVLTEDE 699 Query: 714 FLFLLQ 719 +L L++ Sbjct: 700 WLKLIE 705 >gi|91977847|ref|YP_570506.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB5] gi|123735250|sp|Q133Y4|DNLJ_RHOPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91684303|gb|ABE40605.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB5] Length = 714 Score = 614 bits (1584), Expect = e-173, Method: Composition-based stats. Identities = 305/727 (41%), Positives = 445/727 (61%), Gaps = 28/727 (3%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K I+ L+ +A+ EL L I HD YYQ P I D++YDAL+RR +AI Sbjct: 5 SKTAAPDIDKLTKPKAKVELMRLRLAIEGHDKAYYQDDAPKIPDADYDALRRRLEAIEAK 64 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP+L + P +G KV H++P LSL ++ +++ +F+ R+ RF + + Sbjct: 65 FPELL---SASSPSQTVGAAPARGFSKVQHAVPMLSLGNAFSDDEVGEFVERVQRFLKLE 121 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LN 180 D +I EPKIDG +++RYE G V AA RGDG +GEDV+A +R I IP L Sbjct: 122 DIPAI--VAEPKIDGLSLSLRYENGTLVRAATRGDGFTGEDVTANVRTIADIPTTLKAKT 179 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 IP E+RGEVY+ K+DFLALN G +ANPRN+A+G LR+ + +R L FF Sbjct: 180 IPAACELRGEVYMLKHDFLALNKRQEEAGDTVFANPRNSAAGSLRQKDVAITASRPLKFF 239 Query: 240 VHGLGKT--SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 + G+ + + Q+ ML + GF VN + ++ +++Y + R+ LPY Sbjct: 240 AYAWGEMSDYPMESPTQHAMLAWLGDAGFTVNPEITLCHSVDDALAFYRRIGEQRAALPY 299 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+VYKVD Q +LG +RSPRW I+HKFA +QA T L IDIQ+GRTG LTPVAR Sbjct: 300 DIDGVVYKVDRLDYQARLGFVSRSPRWAIAHKFAAEQAVTVLEKIDIQVGRTGALTPVAR 359 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 L+PV +GG ++ NATLHNEDYIKG+ + G +R G DIR GD V+V+RAG+VIP++V ++ Sbjct: 360 LQPVTVGGVVVQNATLHNEDYIKGVGSDGSPLRDGVDIREGDTVVVQRAGDVIPQIVTVV 419 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 +++R D + FP CP+C S R+ A RCTG L C AQ +ERLKHFVS Sbjct: 420 LDKRPADLPAYKFPHKCPVCGSHAAREEGE------AVWRCTGALICPAQAVERLKHFVS 473 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R AF+I+GLG++Q+ F + +R PADIFTL+ R + K+E++ G+G+ SV N Sbjct: 474 RLAFDIDGLGEKQIVLFHER----GWVREPADIFTLKAR--NAELKLEDLEGYGETSVRN 527 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------HN 591 L+ +I+ RRNI L R IF+LGIRHVG A+ LA++Y S F + + Sbjct: 528 LFAAIDARRNIELNRLIFALGIRHVGEGNAKLLARHYGSIDVFLAAMRAAAEGQTPEGNT 587 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651 ++ + L + +GD++A+A+VEF+ PRN+ A++ALL+E+ + + + + K Sbjct: 588 SEAYQDLDNIAGIGDVVAEAVVEFFAEPRNVGALDALLREIEV-LPVEQAKQDTAVAGKT 646 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 +VFTG L K R +A+ +LGA V+ +S+KTD ++ G++ GSKL KA+ LGV ++ E Sbjct: 647 VVFTGALTKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKARDLGVAVLTE 706 Query: 712 EQFLFLL 718 +++L L+ Sbjct: 707 DEWLALI 713 >gi|39936579|ref|NP_948855.1| DNA ligase [Rhodopseudomonas palustris CGA009] gi|39650435|emb|CAE28958.1| DNA ligase [Rhodopseudomonas palustris CGA009] Length = 692 Score = 614 bits (1582), Expect = e-173, Method: Composition-based stats. Identities = 296/706 (41%), Positives = 438/706 (62%), Gaps = 27/706 (3%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 L EI HD YYQ P I D++YDAL+RR +AI FP+L + + P +G Sbjct: 2 RLRLEIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQKFPELVNA---SSPTQTVGAAP 58 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 KV H++P LSL + +++ +F R+ RF + D +I EPKIDG +++R Sbjct: 59 ARGFAKVQHAVPMLSLGNAFADDEVAEFALRVQRFLKLDDVPAI--VAEPKIDGLSLSLR 116 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDFLAL 201 YE G+ V AA RGDG +GEDV+A +R I +P L P E+RGEVY+ K DFLAL Sbjct: 117 YENGELVRAATRGDGFTGEDVTANVRTIKDVPNTLKGKHIPATCELRGEVYMLKQDFLAL 176 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT--SEIFAKGQYEML 258 N +ANPRN+A+G LR+ + T +R L FF + G+ + Q++ML Sbjct: 177 NKRQEEANETVFANPRNSAAGSLRQKDVTVTASRPLKFFAYAWGEMSDYPMEEPTQHKML 236 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 Q + GF VN + ++ +++Y + R++LPYDIDG+VYKVD Q++LG Sbjct: 237 QWLDHAGFVVNPEITLCHSVEDALAFYRRIGEKRASLPYDIDGVVYKVDRLDYQERLGFV 296 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +RSPRW I+HKFA +QA+T L IDIQ+GRTG +TPVARL+PV +GG ++ NATLHNEDY Sbjct: 297 SRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGAMTPVARLQPVTVGGVVVQNATLHNEDY 356 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 IKG+ G+ +R G DIR GD V+V+RAG+VIP++V +++ +R A+P+ FP CP+C Sbjct: 357 IKGIGNDGEPIRDGVDIREGDTVVVQRAGDVIPQIVSVVMEKRPAGAEPYHFPHKCPVCG 416 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S VR+ A RCTG L C AQ +ERLKHFVSR AF+I+GLG++Q++ F + Sbjct: 417 SHAVREEGE------AVWRCTGALICPAQAVERLKHFVSRLAFDIDGLGEKQIELFHER- 469 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 ++ PADIFTL+ R + K+E + G+G+ SV NL+ +I+ RR+I L R +F+LG Sbjct: 470 ---GWVQEPADIFTLKAR--NAELKLEQLEGYGETSVRNLFAAIDARRSIELHRLVFALG 524 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAH------NNDDWLSLIRVPLVGDIIAQAI 612 IRHVG A+ LA++Y + F + ++ + L + +GD++A+A+ Sbjct: 525 IRHVGEGNAKLLARHYGTLDAFLSAMRAAADAQTEEGNTSEAYQDLDNIAGIGDVVAEAV 584 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 VEF+ RNI A++ALL E++ + + + + K +VFTG+L K R +A+ + Sbjct: 585 VEFFAEERNIKALDALLAELTEVLPAEQARRDTAVAGKTVVFTGSLSKFTRDEAKAAAER 644 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 LGA V+ +S+KTD ++ G++ GSKL KA+ LGV ++ E+++L L+ Sbjct: 645 LGAKVAGSVSKKTDYVVAGEDAGSKLTKAKDLGVTVLTEDEWLALI 690 >gi|83942325|ref|ZP_00954786.1| DNA ligase, NAD-dependent [Sulfitobacter sp. EE-36] gi|83846418|gb|EAP84294.1| DNA ligase, NAD-dependent [Sulfitobacter sp. EE-36] Length = 706 Score = 614 bits (1582), Expect = e-173, Method: Composition-based stats. Identities = 296/714 (41%), Positives = 433/714 (60%), Gaps = 15/714 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 ++ LS E+A+ EL+ L + + Y+ P + D+EYD LKRR AI FP L Sbjct: 5 TALQELSEEEAKAELARLADLLGRANTAYHTQDAPDLSDAEYDRLKRRNQAIEERFPGLK 64 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R+ + P +K+G KV H + LSL + ED+ F RI ++ + Sbjct: 65 RA---DSPSDKVGATPAEGFGKVRHDVAMLSLGNAFEDEDVVDFDARIRKYLGLPSGTPL 121 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 FT EPKIDG +++RYE G+ V AA RGDG GE+V+A R I TIP + P ++E Sbjct: 122 AFTAEPKIDGLSLSLRYENGELVQAATRGDGAVGENVTANARTIDTIPTRIKGA-PALLE 180 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY+ +DF ALN A G K +ANPRNAA+G LR+L+P R L FF + G Sbjct: 181 VRGEVYMRHDDFDALNARQTANGGKTFANPRNAAAGSLRQLDPEITRARPLAFFAYAWGA 240 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S A+ Q++ +++++ GF N + ++++Y +++ R+TL YDIDG+VYK Sbjct: 241 LSAPLAESQFQAIERLKAFGFDTNPLTTLCDGPQEMIAHYRKIEEQRATLGYDIDGVVYK 300 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ LQ +LG R+ +PRW I+HKF + A TRL DI IQ+GRTG L+PVARL PV +GG Sbjct: 301 VNDLGLQDRLGFRSTTPRWAIAHKFPAELAWTRLEDITIQVGRTGALSPVARLHPVTVGG 360 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHNEDYIKGLD+ G +R G+DIRVGD V V RAG+VIPK+ D+ + +R DA Sbjct: 361 VVVSNATLHNEDYIKGLDSKGARIREGKDIRVGDWVQVYRAGDVIPKIADVDLGKRPEDA 420 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + + +P+ CP C S +R+ A RCTGGL C AQ +E+LKHFVSR AF+I+G Sbjct: 421 RAYVYPTTCPECGSDAIREEG------DAVRRCTGGLICPAQAVEKLKHFVSRAAFDIDG 474 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG +Q++ F+ I PADIFTL+ R + +++N G+G+ S L+ +I + Sbjct: 475 LGAKQVEQFYGD----GWIAEPADIFTLKTRYGSGMQQLKNREGWGEKSADKLFQAIEDK 530 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R ISL R IF+LGIRHVG + +A++Y S+ F + + + + W LI V VG Sbjct: 531 RKISLSRLIFALGIRHVGEAASNLIAQHYGSWTAFEAAMGHAKSGDGPAWDDLIGVDGVG 590 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++AQ++V + +++ L+ E+S S + K +VFTGTL+K+ R + Sbjct: 591 QVMAQSLVSTFAQEAERASIDRLVTELSVQDVALPDTEGSPVAGKTVVFTGTLEKMTRAE 650 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+ +LGA VS +S KTDI++ G GSK +KA LG++ ++E+ +L L+ Sbjct: 651 AKARAERLGAKVSGSVSAKTDILVAGPGAGSKAKKAADLGIQTLDEDGWLALID 704 >gi|148257407|ref|YP_001241992.1| DNA ligase (polydeoxyribonucleotide synthase (NAD+)) [Bradyrhizobium sp. BTAi1] gi|166215399|sp|A5EPJ2|DNLJ_BRASB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146409580|gb|ABQ38086.1| DNA ligase (Polydeoxyribonucleotide synthase (NAD+)) [Bradyrhizobium sp. BTAi1] Length = 716 Score = 614 bits (1582), Expect = e-173, Method: Composition-based stats. Identities = 305/722 (42%), Positives = 452/722 (62%), Gaps = 14/722 (1%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K ++ + + L+ QA+ E L E+ HD YYQ P I D+EYD L+RR +AI Sbjct: 6 KPKKPVDVAELTKAQAKVEWKRLALELEVHDRLYYQDDAPKISDAEYDELRRRFNAIETR 65 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP+L SE P K+G + KV H++P LSL+ + ED+R F+ RI RF + Sbjct: 66 FPELVSSE---SPSQKVGASPSGRFKKVRHAVPMLSLDNAFAEEDVRDFVGRIARFLKLA 122 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-N 180 DD I F+ EPKIDG +++RYE G+ V AA RGDG GEDV+A IR + +P+ L N Sbjct: 123 DDR-IDFSAEPKIDGLSMSLRYEGGELVTAATRGDGAEGEDVTANIRTLKDVPQKLHGRN 181 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P++ EVRGEVY++K FLALN+ G +ANPRN+A+G LR+ +P +R L FF Sbjct: 182 WPDVCEVRGEVYMTKQAFLALNERQKEAGDTIFANPRNSAAGSLRQKDPAITASRPLGFF 241 Query: 240 VHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 + G+ S A+ Q M++ GF N R ++ +++++ ++ R+ L YD Sbjct: 242 AYAWGEISGTPPAETQTGMIKWFEQCGFTTNPLTRLCHSVEELIAFHRSIEEQRAELDYD 301 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKVD Q++LG +R+PRW I+HKF ++A T L DI+IQ+GRTG LTPV +L Sbjct: 302 IDGVVYKVDRIDWQERLGFVSRTPRWAIAHKFPAERAMTVLKDIEIQVGRTGSLTPVGKL 361 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GG ++ N TLHNEDYIKG+ G+V+R GRDIR+GD V+++RAG+VIP+VVD+++ Sbjct: 362 EPVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDVVI 421 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ++R A+PF P CP V TG+ + RCTG AC Q++E LK F SR Sbjct: 422 DKRPAQARPFHLPKTCPCPLHTDVVREETATGEEGSRARCTGEFACPYQKIEHLKLFASR 481 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 AF+I+GLG++Q+ FFF+ ++ PADIFTLQ+R + K+E I G+G+ SV NL Sbjct: 482 RAFDIDGLGEKQIAFFFEQ----GWVKEPADIFTLQKR--NAGLKLEEIEGYGETSVRNL 535 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +++I+ RR I+LERFI++LG+RHVG A +LA+ Y S+ F + + A + + + Sbjct: 536 FNAIDARREIALERFIYALGMRHVGETTALALARGYGSWDAFHEACLKVAAGDEEAIAEM 595 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 + +GD + +++ ++ N VE L +EV K S I K +VFTGTL Sbjct: 596 DALDQIGDTVIKSVAAYFAEDHNRGIVERLTQEVKILDAEKPKR-HSPIATKTVVFTGTL 654 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +K+ R +A+ +LGA VS +S+KTD ++ G GSKL++AQ+ GV+++ E+++L L+ Sbjct: 655 EKMTRDEAKATAERLGAKVSGSVSKKTDYVVAGPGAGSKLKEAQKHGVQVLTEDEWLQLI 714 Query: 719 QQ 720 + Sbjct: 715 AE 716 >gi|294852747|ref|ZP_06793420.1| DNA ligase [Brucella sp. NVSL 07-0026] gi|294821336|gb|EFG38335.1| DNA ligase [Brucella sp. NVSL 07-0026] Length = 719 Score = 613 bits (1581), Expect = e-173, Method: Composition-based stats. Identities = 334/724 (46%), Positives = 471/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P ++G + V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GF VN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFLVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAGQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + ++ W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|27381702|ref|NP_773231.1| DNA ligase [Bradyrhizobium japonicum USDA 110] gi|81735382|sp|Q89FV8|DNLJ_BRAJA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|27354871|dbj|BAC51856.1| DNA ligase [Bradyrhizobium japonicum USDA 110] Length = 716 Score = 613 bits (1580), Expect = e-173, Method: Composition-based stats. Identities = 302/721 (41%), Positives = 449/721 (62%), Gaps = 13/721 (1%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K + L + L+ QA+ EL L E+ HD YYQ P + D+EYDAL++R +AI Sbjct: 7 KSKPLRDVAELTKAQAKVELMRLALELEGHDKRYYQDDAPTVTDAEYDALRQRFNAIEKR 66 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP+ +E P K+G + KV H++P LSL+ + ED+R F+ RI RF + Sbjct: 67 FPEFVSAE---SPSQKVGAAPSGRFRKVRHAVPMLSLDNAFAEEDVRDFVGRIVRFLKL- 122 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 DD+ I F+ EPKIDG +++RYE G+ V AA RGDG GEDV+A IR + +P+ L Sbjct: 123 DDDKIDFSAEPKIDGLSMSLRYEGGELVTAATRGDGAEGEDVTANIRTLEDVPQKLKGRN 182 Query: 182 -PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P+I EVRGEVY++K FLALN+ A G +ANPRN+A+G LR+ +PT +R L FF Sbjct: 183 VPDICEVRGEVYMTKKAFLALNERQKAAGDTIFANPRNSAAGSLRQKDPTITASRPLGFF 242 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ S + + Q M+ GF N R ++ +++++ ++ R+ L YDI Sbjct: 243 AYAWGEMSAMPEETQTGMIHWFERCGFKTNPLTRLCHSVEELIAFHQRIEEERAELDYDI 302 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD Q++LG +R+PRW I+HKF +QA T L DI+IQ+GRTG TPV +LE Sbjct: 303 DGVVYKVDRIDWQERLGFVSRTPRWGIAHKFPAEQAMTVLRDIEIQVGRTGSFTPVGKLE 362 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG ++ N TLHNEDYIKG+ G+V+R GRDIR+GD V+++RAG+VIP+VVD++++ Sbjct: 363 PVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDVVLD 422 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R A+ F FP CP V G+ + RCTG AC Q++E LK FVSR Sbjct: 423 KRPKTAKEFHFPKTCPCPLHTDVTREETAAGEEGSRARCTGEFACPYQKIEHLKLFVSRR 482 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+I+GLG++QL +FF ++ PADIFTL++R + K+E I G+G SV NL+ Sbjct: 483 AFDIDGLGEKQLQYFFDE----GFVKEPADIFTLEKR--NAKLKLEEIEGYGATSVRNLF 536 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I RR I+LERF+++LG+RHVG A +LA+ Y S++ F + + + + Sbjct: 537 AAIESRRRIALERFVYALGMRHVGETTALALARGYGSWEAFHDACLKVAKGDEEAMADMD 596 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 + +GD + ++I +++ N VE L KEV K+ +S + K +VFTG+L+ Sbjct: 597 ALDQIGDTVIKSIADYFGESHNRGIVERLTKEVEIVDAEKPKS-NSAVAGKTVVFTGSLE 655 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 K+ R +A+ +LGA VS +S+KTD+++ G GSKL +A + GVK++ E+++L L+ Sbjct: 656 KMTRDEAKATAERLGAKVSGSVSKKTDLVVAGPGAGSKLAEANKHGVKVLTEDEWLKLIG 715 Query: 720 Q 720 + Sbjct: 716 E 716 >gi|85714986|ref|ZP_01045971.1| NAD-dependent DNA ligase [Nitrobacter sp. Nb-311A] gi|85698183|gb|EAQ36055.1| NAD-dependent DNA ligase [Nitrobacter sp. Nb-311A] Length = 705 Score = 613 bits (1580), Expect = e-173, Method: Composition-based stats. Identities = 304/726 (41%), Positives = 448/726 (61%), Gaps = 33/726 (4%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K + P+++L+ QAR E L EI H++ YYQ P + D+ YDA++RR +AI Sbjct: 4 KSKVPPPVDSLTRSQARVEHKRLVLEIEAHNERYYQQDAPTVSDAAYDAMQRRLEAIEAR 63 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FPDL + + P +G KV H++P LSL ++ ++ +F+ RI RF + Sbjct: 64 FPDLVTA---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFSDAEVAEFVERIRRFLKLG 120 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 D+ EPKIDG +++RYE G+ V AA RGDG +GEDV+A +R I +P L Sbjct: 121 ADDIPAIVAEPKIDGLSLSLRYEHGELVRAATRGDGFTGEDVTANVRTIRDVPHTLRGRD 180 Query: 182 -PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P E+RGEVY+ K DFLALN + A G +ANPRN+A+G LR+ + +R L FF Sbjct: 181 IPAACELRGEVYMLKEDFLALNKKQEAAGDTVFANPRNSAAGSLRQKDVAITASRPLKFF 240 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ ++ A+ Q++ML+ +R +GF VN + ++ ++ +Y + R+TL YDI Sbjct: 241 AYAWGEMTDRPAETQHDMLKWLRDVGFMVNPLIELCSSVEQVLQFYRRIGEQRATLGYDI 300 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD Q++LG +RSPRW I+HKFA +QA T L IDIQ+GRTG +TPVARLE Sbjct: 301 DGVVYKVDRLDWQERLGFVSRSPRWAIAHKFAAEQAMTILRGIDIQVGRTGAMTPVARLE 360 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG ++ NATLHNED I +DI VGD V+V+RAG+VIP+VV +I+ Sbjct: 361 PVTVGGVVVQNATLHNEDEITR-----------KDIHVGDTVVVQRAGDVIPQVVSVIIG 409 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R +AQP+ FP CP+C S VR+ A RCTG L C AQ +ERLKHFVSR Sbjct: 410 KRPRNAQPYVFPHKCPVCGSHAVREEGE------AVRRCTGTLICPAQAVERLKHFVSRL 463 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+I+GLG++Q+ F+ I P DIFTLQ+R +T K+ + G+GDVSV NL+ Sbjct: 464 AFDIDGLGEKQIQEFYDD----GLIMHPVDIFTLQKRDARATKKLRDREGYGDVSVRNLF 519 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH------NND 593 +I+ RR I L R IF+LGIRHVG A+ LA++Y +NF + ++ Sbjct: 520 AAIDARRKIELNRLIFALGIRHVGEGNAKLLARHYGGIENFRSAMAEAAGAQTDEGNASE 579 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653 + L + +G+I+A A+VEF+ PRN+ A+ LL+E+ + + S + K +V Sbjct: 580 AYADLNNIGGIGEIVANAVVEFFAEPRNVKALNDLLEEIEV-LPVAQTRSDSAVAGKTVV 638 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 FTG+L+K R +A+ ++GA VS +S+KTD+++ G GSKL+ A++ GV++++E++ Sbjct: 639 FTGSLEKFTRDEAKASAERMGARVSGSVSKKTDLVVAGPGAGSKLKDAEKFGVRVISEDE 698 Query: 714 FLFLLQ 719 +L L++ Sbjct: 699 WLKLIE 704 >gi|240850882|ref|YP_002972282.1| DNA ligase [Bartonella grahamii as4aup] gi|240268005|gb|ACS51593.1| DNA ligase [Bartonella grahamii as4aup] Length = 719 Score = 611 bits (1576), Expect = e-172, Method: Composition-based stats. Identities = 338/721 (46%), Positives = 472/721 (65%), Gaps = 17/721 (2%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 + L+ +A EL L +EI+ HD Y + +P I D+EYDAL+RR I FP+L R Sbjct: 7 KNLTAVEAESELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEALFPELIRV- 65 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 + P +KIG ++ K H+ P LSL+ ++ ED+ +F+ RI RF + + + T Sbjct: 66 --DSPSHKIGAPISEKFEKSVHAQPMLSLDNAFSSEDVTEFVERIRRFLRLPETQVLEIT 123 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 EPKIDG +++RYEKG+ V AA RGDG GE+V+A R I IP+VL + P+IIEVRG Sbjct: 124 AEPKIDGLSLSLRYEKGRLVGAATRGDGTVGENVTANARTIADIPQVLQGDFPDIIEVRG 183 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE 248 EVY+ + DF ALN G+ +ANPRNAA+G LR+L+ +R L FF + G+ SE Sbjct: 184 EVYMGREDFQALNISQQEKGKLTFANPRNAAAGSLRQLDSRITASRKLQFFAYACGEVSE 243 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 I A+ Q EM++K++ GF +N + T I+SYY++++ R +L YDIDG+VYKV++ Sbjct: 244 ILAESQMEMMKKLKEYGFVINPLTKAFKTLEEIISYYHDIEECRHSLSYDIDGIVYKVND 303 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 LQK+LG +RSPRW I+HKF ++A L DIDIQ+GRTG LTPVARL P+ +GG ++ Sbjct: 304 LMLQKRLGFVSRSPRWAIAHKFPAEKAIALLKDIDIQVGRTGALTPVARLTPITVGGVVV 363 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 TNA+LHNEDYIKG+ G+ +R GRDIRVGD V+V+RAG+VIP+V+D+I+ +R DA F Sbjct: 364 TNASLHNEDYIKGIGHKGEPIREGRDIRVGDSVIVQRAGDVIPQVIDVIIEKRPKDAAVF 423 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP C S VR++ A RCTGGL C AQ +ER++HFV+R+AF+IEGLGK Sbjct: 424 IFPHLCPACGSHAVREVGE------AVRRCTGGLICPAQAIERIRHFVARNAFDIEGLGK 477 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 +Q++FFF ++D A I PADIFTL+RRQ+ S ++ENI GFG VSV LYD+IN RR I Sbjct: 478 KQVEFFFYAQDEALCIHTPADIFTLERRQEKSLIRLENIEGFGTVSVRKLYDAINARREI 537 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI-------NNIIAHNNDDWLSLIRV 601 L RF+F+LGIRHVG AR LA+ Y +Y F + N+ W+ L + Sbjct: 538 PLSRFLFALGIRHVGEVNARRLARTYKNYTAFETTAMGALMPCDKANEKGNEAWMELTNI 597 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G + AIV+FYQ N + LL+EV+P SS I K +VFTGTL + Sbjct: 598 EGIGPQVGSAIVDFYQEAHNREVLSVLLEEVTPLDEEPITTASSPIAEKTIVFTGTLAHM 657 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R +A+ +LGA S LS+KTD+++ G GSKL KA++LGV++++EE +L L++++ Sbjct: 658 SRDEAKALAERLGAKTSGSLSKKTDLLVAGPGAGSKLAKAEELGVEVIDEETWLQLIEEH 717 Query: 722 N 722 + Sbjct: 718 D 718 >gi|163868703|ref|YP_001609915.1| NAD-dependent DNA ligase LigA [Bartonella tribocorum CIP 105476] gi|190359235|sp|A9IW95|DNLJ_BART1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|161018362|emb|CAK01920.1| DNA ligase [Bartonella tribocorum CIP 105476] Length = 719 Score = 611 bits (1574), Expect = e-172, Method: Composition-based stats. Identities = 337/723 (46%), Positives = 472/723 (65%), Gaps = 17/723 (2%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ L++ +A +EL L +EI+ HD Y + +P I D+EYDAL+RR I FP+L R Sbjct: 6 IKNLTVVEAERELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEALFPELIRV 65 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P +KIG ++ K H+ P LSL+ ++ ED+ +F+ RI RF + + + Sbjct: 66 ---DSPSHKIGAAISEKFEKSVHAQPMLSLDNAFSAEDVYEFVERIRRFLRLPETQVLEI 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYEKG+ V AA RGDG GE+V+A R I IP+VL + P++IEVR Sbjct: 123 TAEPKIDGLSLSLRYEKGRLVRAATRGDGTVGENVTANARTIADIPQVLQGDFPDVIEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247 GEVY+ + DF ALN G+ +ANPRNAA+G LR+L+ +R L FF + G+ S Sbjct: 183 GEVYMGREDFQALNISQQEKGKLTFANPRNAAAGSLRQLDSRITASRKLQFFAYACGEVS 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 EIFA+ Q EM+ K++ GF +N + T I+SYY +++ R +L YDIDG+VYKV+ Sbjct: 243 EIFAESQMEMMTKLKEYGFVINPLTKVFKTVEDIISYYRDIEERRYSLNYDIDGIVYKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + LQK+LG +RSPRW I+HKF ++A L DIDIQ+GRTG LTPVARL P+ IGG + Sbjct: 303 DLMLQKRLGFVSRSPRWAIAHKFPAEKAMALLEDIDIQVGRTGALTPVARLTPITIGGVV 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +TNA+LHNEDYIKG+ G+ +R GRDIR+GD V+++RAG+VIP+VVDI++ +R D+ Sbjct: 363 VTNASLHNEDYIKGIGHKGEPIREGRDIRIGDTVIIQRAGDVIPQVVDIVLEKRQKDSSA 422 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP C S VR++ A RCTGGL C AQ +ER++HFV+R+AF+IEGLG Sbjct: 423 FVFPDLCPACGSHAVREVGE------AVRRCTGGLICPAQAIERIRHFVARNAFDIEGLG 476 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 K+Q++FFF ++D A I PADIFTL+RRQ+ S ++ENI GFG VSV LYD+IN RR Sbjct: 477 KKQVEFFFHAQDEALCIHTPADIFTLERRQEKSLIRLENIEGFGTVSVRKLYDAINARRE 536 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII-------AHNNDDWLSLIR 600 I L RF+F+LGIRHVG AR LA+ Y +Y F + N+ W+ L Sbjct: 537 IPLSRFLFALGIRHVGEVNARRLARAYQTYTAFETAAMEALMPCKQDNKEGNEAWMELTN 596 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 + +G + AIV+FYQ N + LL+E++P SS I K +VFTGTL Sbjct: 597 IEGIGPQVGSAIVDFYQEAHNREVLAVLLEEITPLDEVPIMTASSPIAEKIIVFTGTLAH 656 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R +A+ +LGA S LS+KTD+++ G GSKL KAQ+ GV++++EE ++ L++ Sbjct: 657 MSRDEAKALAERLGAKTSGSLSKKTDLLVAGPGAGSKLTKAQEFGVQVIDEEAWMRLIKG 716 Query: 721 YNT 723 +N Sbjct: 717 HNI 719 >gi|153009084|ref|YP_001370299.1| NAD-dependent DNA ligase LigA [Ochrobactrum anthropi ATCC 49188] gi|166216221|sp|A6WZR6|DNLJ_OCHA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|151560972|gb|ABS14470.1| DNA ligase, NAD-dependent [Ochrobactrum anthropi ATCC 49188] Length = 721 Score = 610 bits (1572), Expect = e-172, Method: Composition-based stats. Identities = 332/727 (45%), Positives = 470/727 (64%), Gaps = 21/727 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 P+E L+ +A EL L +EI++HD+ Y+ +P I D+EYDALKRR DAI FP L Sbjct: 4 TPVEKLTEPEAVSELERLAREIAHHDELYHANDRPEISDAEYDALKRRNDAIEARFPHLV 63 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R+ + P ++G +V H+ P LSL ++ +D+R F+ +YRF DNSI Sbjct: 64 RT---DSPSLRVGTAPVSKFAQVVHARPMLSLGNAFSDDDVRDFVGSVYRFLGPLPDNSI 120 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 FT EPKIDG ++IRYE G + A RGDG +GE+V+ IR I IP L P ++E Sbjct: 121 AFTAEPKIDGLSMSIRYENGILISGATRGDGTTGENVTTNIRTIAEIPNRLPAGAPSVVE 180 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY++K+DFLALN++M A G++ Y NPRN A+G LR+L+ +R L FF + G+ Sbjct: 181 VRGEVYMAKSDFLALNEQMAAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGE 240 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S++ A Q M++ R GFPVN ++ + ++++Y + R+ L YDIDG+VYK Sbjct: 241 MSDMPADTQMGMVEIFREWGFPVNPLTKRLHGADELLAHYRAIGLERAQLDYDIDGVVYK 300 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD LQ +LG R+RSPRW I+HKF +QA+T L IDIQ+GRTG LTPVARLEP+ +GG Sbjct: 301 VDRLDLQTRLGFRSRSPRWAIAHKFPAEQATTILRGIDIQVGRTGALTPVARLEPITVGG 360 Query: 366 ALITNATLHNEDYIKGLDASGKVMR-GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 ++TNATLHNEDYIKG+ G+ +R DIRVGD V+V+RAG+VIP++VD+++ +R D Sbjct: 361 VVVTNATLHNEDYIKGIGLKGERIRADEHDIRVGDTVIVQRAGDVIPQIVDVVLEKRKAD 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A PF FP CP+C S VR+ A +RCTGGL C+AQ +ER++HFVSR+AF+IE Sbjct: 421 ATPFVFPHECPVCHSHAVREEGE------AVYRCTGGLTCAAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGDVSVTNLYDSIN 543 GLG++Q++FFF +ED I+ PADIFTLQ+RQ S K+ENI GFG SV LYD+IN Sbjct: 475 GLGEKQVEFFFHAEDDKLKIKSPADIFTLQQRQAESPLKKLENIEGFGATSVKKLYDAIN 534 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN--------NIIAHNNDDW 595 RR I+L RF+F LGIRHVG A+ A+ YLSY F + + N+ W Sbjct: 535 DRREIALHRFLFGLGIRHVGEVNAKRFARAYLSYAAFEEAALEAVPPKEGDRTDKGNEAW 594 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVF 654 LI V +G I+A+A+V+FY P N ++ L K + + S +E K +VF Sbjct: 595 QELIAVEGIGSIVAEAVVDFYAEPHNREVLDNLFKAGVTPVDEVALVSTGSPVEGKTVVF 654 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TG+L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG+++++E+ + Sbjct: 655 TGSLERMSRDEAKAMAERYGAKTAGSVSKKTDLVVAGPGAGSKLAKASELGIEVIDEDAW 714 Query: 715 LFLLQQY 721 L+ + Sbjct: 715 FTLVGEE 721 >gi|158421773|ref|YP_001523065.1| NAD-dependent DNA ligase [Azorhizobium caulinodans ORS 571] gi|190359227|sp|A8IGY0|DNLJ_AZOC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|158328662|dbj|BAF86147.1| NAD-dependent DNA ligase [Azorhizobium caulinodans ORS 571] Length = 739 Score = 608 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 314/733 (42%), Positives = 459/733 (62%), Gaps = 30/733 (4%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 + LS +A E ++L QEI+ HD YYQ P+I D++YD L+RR + I FP L Sbjct: 14 AVSDLSATEASDEHAALSQEIASHDARYYQEDAPVISDADYDRLRRRYEDIEARFPALKN 73 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + K+G + KV H +P LSL+ ++ E++ +F+ R+ RF + + Sbjct: 74 D---DSLSRKVGAAPSAKFAKVVHQVPMLSLQNAFSDEEVEEFVARVRRFLNLAESAELA 130 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 FT EPKIDG ++RYE G V AA RGDG GEDV+A +R I IP L+ +P+II+ Sbjct: 131 FTAEPKIDGLSCSLRYEGGVLVRAATRGDGTQGEDVTANVRTIAEIPHRLTGAGVPDIID 190 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 +RGEVY+ K DFLALN G+ +ANPRNAA+G LR+L+P +R L FF + G+ Sbjct: 191 IRGEVYMGKADFLALNARQEEAGKPVFANPRNAAAGSLRQLDPEITRSRPLRFFAYAWGQ 250 Query: 246 TSEIFAK-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 Q+E++ R G P N + G++++Y ++ + R++L YDIDG+VY Sbjct: 251 AEPGPPGASQHEVVDAFRRFGLPTNPLTIRVTDAAGLLAHYRKIGAERASLGYDIDGVVY 310 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD +LQ++LG +RSPRW I+HKFA +QA+T + I+IQ+GRTG LTPVA+L PV +G Sbjct: 311 KVDSLALQERLGFVSRSPRWAIAHKFAAEQATTVIEAIEIQVGRTGALTPVAKLTPVTVG 370 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +++NATLHNEDYI+ + +G+ +R G DIRVGD V+V+RAG+VIP+VV +++++R Sbjct: 371 GVVVSNATLHNEDYIRAIGGNGEEIREGIDIRVGDTVVVQRAGDVIPQVVSVVLDKRPAG 430 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A + FP CP+C S+ VR+++PKTGK A RCTGGL C AQ +ERL+HFVSR+AF+IE Sbjct: 431 ATAYQFPHHCPVCNSQAVREVDPKTGKQDAVRRCTGGLICPAQAVERLRHFVSRNAFDIE 490 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q F++ + I PADIF LQ R + S +K+EN G+G S NL+ +I Sbjct: 491 GLGEKQAHAFYEWK----LIAEPADIFRLQARNEQSLSKLENREGWGRTSAQNLFAAIEA 546 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE-------------------IN 585 RR I+L+RFIF+LGIRHVG A+ LA++Y S + Sbjct: 547 RRTIALDRFIFALGIRHVGETNAKRLARHYGSVEALRDAAIGAEMPTEMEEASEETPPTR 606 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645 N+ W + + +G ++A+A+VEF++ P N VE LLKEV+P +S Sbjct: 607 RRKPQGNEVWQEMTDIDGIGAVVAEAVVEFFREPHNRQVVEELLKEVTPQP-LEAVASTS 665 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 + K +VFTG+L+++ R +A+ +LGA V+ +S KTD+++ G GSKLEKA+ LG Sbjct: 666 PVSGKTVVFTGSLERMTRDEAKAMAERLGAKVAGSVSGKTDLLVAGPGAGSKLEKARSLG 725 Query: 706 VKIMNEEQFLFLL 718 VK + E+++ L+ Sbjct: 726 VKTITEDEWFDLV 738 >gi|49475845|ref|YP_033886.1| NAD-dependent DNA ligase LigA [Bartonella henselae str. Houston-1] gi|81647763|sp|Q6G2R5|DNLJ_BARHE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|49238653|emb|CAF27899.1| DNA ligase [Bartonella henselae str. Houston-1] Length = 716 Score = 606 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 334/727 (45%), Positives = 473/727 (65%), Gaps = 20/727 (2%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M K + I+ L+ +A EL L +EI+ HD Y + +P I D+EYDAL+RR I Sbjct: 1 MHKDE---IQNLTALEAASELEWLAKEITRHDVLYNRNDQPEISDAEYDALRRRNAEIEA 57 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP+L R P+ P +KIG ++ K HS P LSL+ ++ ED+ +F+ R+ RF + Sbjct: 58 LFPELIR---PDSPSHKIGAPISEKFEKSVHSQPMLSLDNAFSSEDVSEFMERVRRFLRL 114 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 + + T EPKIDG +++RYE+G+ V AA RGDG+ GE+V+A R I IP+VL Sbjct: 115 PETQMLEITAEPKIDGLSLSLRYEQGRLVCAATRGDGYVGENVTANARTISDIPQVLQGK 174 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFF 239 P+IIEVRGEVY+ + DF ALN G+ +ANPRNAA+G LR+L+ +R L FF Sbjct: 175 FPDIIEVRGEVYMRRADFQALNVNQQEKGKLAFANPRNAAAGSLRQLDSRITASRKLQFF 234 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ SEIFA+ Q M++K++ GF +N +++ + ++SYY++++ R L YDI Sbjct: 235 AYACGEVSEIFAESQMGMMEKLKEYGFVINPLIKKIKSLEELISYYHDIEERRHALSYDI 294 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKV++ LQ +LG +RSPRW I+HKF ++A T L IDIQ+GRTG LTPVARL Sbjct: 295 DGIVYKVNDLMLQMRLGFVSRSPRWAIAHKFPAEKAMTVLEGIDIQVGRTGALTPVARLA 354 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 P+ +GG +ITNA+LHNEDYIKG+ + G+ +R G DIRVGD V+V+RAG+VIP+++DI+ Sbjct: 355 PITVGGVVITNASLHNEDYIKGIGSKGEPIREGNDIRVGDTVIVQRAGDVIPQIIDIVAE 414 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R DA F FP CP C S VR++ A RCTGGL C AQ +ER++HFVSR+ Sbjct: 415 KRSKDASAFVFPYLCPACGSYAVREIGE------AVRRCTGGLICPAQAIERIRHFVSRN 468 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+IEGLGK+Q++FFF+ +D I PADIFTLQRRQ+ S +EN+ GFG VSV LY Sbjct: 469 AFDIEGLGKKQVEFFFQIQDETLCIHTPADIFTLQRRQEKSLVHLENMEGFGTVSVRKLY 528 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI-------NNIIAHNN 592 D+IN RR I L RF+F+LGIR+VG AR LA+ Y +Y F + + N Sbjct: 529 DAINARRKIPLSRFLFALGIRYVGEVNARRLARAYQNYTAFETAAMAATMPDDKVGKEGN 588 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652 + W+ L + +G + +AI++FY+ N + LL EV+P SS I K + Sbjct: 589 EAWMELTNIEGIGPQVGEAIIDFYKEVHNREVLSGLLCEVTPLDEESVMTASSPIAGKII 648 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 VFTGTL ++ R +A+ +LGA S LS+KT++++ G GSKL KAQ+LGV++++EE Sbjct: 649 VFTGTLTRMSRDEAKALAERLGAKTSGSLSKKTNLLVAGVGGGSKLTKAQELGVEVIDEE 708 Query: 713 QFLFLLQ 719 +L L++ Sbjct: 709 AWLQLIE 715 >gi|260433791|ref|ZP_05787762.1| DNA ligase, NAD-dependent [Silicibacter lacuscaerulensis ITI-1157] gi|260417619|gb|EEX10878.1| DNA ligase, NAD-dependent [Silicibacter lacuscaerulensis ITI-1157] Length = 708 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 299/715 (41%), Positives = 445/715 (62%), Gaps = 13/715 (1%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 IP++ L+ +QA++EL+ L + ++ Y+ P I D+EYDALKRR I FP L Sbjct: 5 IPVQELTEDQAKEELARLASALLRANELYHGQDAPEISDAEYDALKRRNLEIEARFPHLK 64 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R P+ P ++G + KV HS+ +SL ++ D+R F+ I ++ +D+ Sbjct: 65 R---PDSPTEQVGARPSEGFDKVRHSVRMMSLGNAFDETDVRDFVRSIQKYLGLSEDDVP 121 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 FT EPKIDG +++RYE G V AA RGDG GE+V+A + IP+ L+ P+I+E Sbjct: 122 EFTAEPKIDGLSLSLRYENGTLVQAATRGDGEVGENVTANALTVGDIPKALTGA-PKILE 180 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY+S DF LN + G K +ANPRNAA+G LR+L+P +R L FF + G+ Sbjct: 181 VRGEVYMSHEDFARLNQKQSESGGKLFANPRNAAAGSLRQLDPEVTRSRPLRFFAYAWGE 240 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 SE + Q E L ++ LGF N R + ++++Y ++ R+TL YDIDG+VYK Sbjct: 241 LSEPLGQTQIEGLARLASLGFATNGLTRLCRSVEDMLAHYRTIEEQRATLGYDIDGVVYK 300 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ +LQ +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV +GG Sbjct: 301 VNDLALQARLGYRSTTPRWAIAHKFPAETAWTRLEAIDIQVGRTGALSPVARLHPVTVGG 360 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHNEDYI G DA G V+R G+DIRVGD V V RAG+VIPK+ D+ +++R A Sbjct: 361 VVVSNATLHNEDYIAGRDAKGNVIRDGKDIRVGDWVQVYRAGDVIPKIADVDLSKRPDWA 420 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 PF FP+ CP C S +R+ + RCTGG+ C AQ +E+LKHFVSR AF+IEG Sbjct: 421 VPFEFPTKCPECGSDAIREEG------DSVRRCTGGIICPAQAVEKLKHFVSRKAFDIEG 474 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG +Q++ F+ DP ++ P DIFTLQ+R + + K+ N G+G SV L+ +I+++ Sbjct: 475 LGTKQIEMFYD--DPDLPVKTPVDIFTLQQRDEANLNKLANRKGWGRQSVAKLWAAIDEK 532 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R + L R +F+LGIRHVG + LA +Y S++ F + + +W L+ + VG Sbjct: 533 RTVPLARLLFALGIRHVGEAASNLLANHYGSWEAFEKAMTAAADFEGPEWQELLSIDGVG 592 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +++A+ +V + ++ L+ +++ S + K +VFTGTL+K+ R + Sbjct: 593 EVMARTLVSTFAQEAERKTIDDLVAQLNVLDAERPDTSDSPVAGKTIVFTGTLEKMTRAE 652 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ LGA VS +S+KTDI++ G GSK +KA +LGVK+++E+++L L+ Sbjct: 653 AKARAEALGAKVSGSVSKKTDIVVAGPGAGSKAKKAAELGVKVLDEDEWLHLIGD 707 >gi|121602535|ref|YP_989218.1| NAD-dependent DNA ligase LigA [Bartonella bacilliformis KC583] gi|166215397|sp|A1UTB5|DNLJ_BARBK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|120614712|gb|ABM45313.1| DNA ligase, NAD-dependent [Bartonella bacilliformis KC583] Length = 717 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 323/723 (44%), Positives = 471/723 (65%), Gaps = 16/723 (2%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 + L+ +A +EL L +EI+ HD Y + +P I D+ YDAL+RR I FP+L R Sbjct: 4 DAKNLTALEAERELEWLAKEIARHDVLYNNHDQPEISDARYDALRRRNIEIETLFPELVR 63 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + + P K+G ++ K H+ LSL+ ++ ED+ +F+ R+ RF + ++ Sbjct: 64 A---DSPSYKVGAPISERFEKSVHAQAMLSLDNAFSSEDVHEFVERVRRFLRLPVTKTLE 120 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 T EPKIDG +++RYEKGK V AA RGDG+ GE+V+ R + IP+VL + P+I+EV Sbjct: 121 MTAEPKIDGLSLSLRYEKGKLVCAATRGDGYVGENVTVNARTLSDIPQVLQGDFPDILEV 180 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246 RGEVY+ +DF LN + G+ +ANPRNAA+G LR+L+ R L FF +G G+ Sbjct: 181 RGEVYMRHSDFQDLNVDQQEKGKLVFANPRNAAAGSLRQLDTRMTARRKLKFFAYGWGEV 240 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE+ AK Q EM++K++ GF +N + ++SYY+ ++ R L YDIDG+VYKV Sbjct: 241 SEMPAKSQMEMVKKLKEYGFVINPLTKVFKAVEDLISYYHFIEEGRQHLDYDIDGVVYKV 300 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ LQ +LG +RSPRW I+HKF ++A L +IDIQIGRTG LTPVARL P+ +GG Sbjct: 301 NDLLLQTRLGNVSRSPRWAIAHKFPAEKAMALLENIDIQIGRTGALTPVARLAPITVGGV 360 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++TNA+LHNEDYIKGL + + +R GRDIR+GD V+V+RAG+VIP+++D+I+ +R A Sbjct: 361 VVTNASLHNEDYIKGLGSKSESIREGRDIRIGDTVIVQRAGDVIPQIIDVIIEKRPKGAS 420 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 PF FPS CP C S VR++ A RCTGGL C AQ +ER++HFVSR+AF+IEGL Sbjct: 421 PFVFPSLCPACGSHAVREVGE------AVRRCTGGLICPAQAIERIRHFVSRNAFDIEGL 474 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++Q++FFF ++D I PADIFTLQ+RQ+ S T++EN+ GFG +SV LYD+IN RR Sbjct: 475 GEKQVEFFFHAQDETLRIHSPADIFTLQKRQEKSLTRLENMEGFGTLSVRKLYDAINARR 534 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ-EINNII-----AHNNDDWLSLIR 600 I L RF+F+LGIRHVG AR LA+ Y +Y F + ++ N++WL L Sbjct: 535 KIPLSRFLFALGIRHVGEVNARRLARAYQNYNAFETVAMTALMPCNKEDKGNEEWLELTS 594 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 + +G + +AI++FYQ N + +LL+EV+P S + K +VFTGTL Sbjct: 595 IEGIGVRVGKAIIDFYQETHNRDVLSSLLQEVTPLPEEAAVADYSPVAGKTIVFTGTLVH 654 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R + + +LGA S+ +S+KTD+++ G GSKL KA++LG++IM+EE +L L+ + Sbjct: 655 MSRDEVKALAERLGAKASSSISKKTDLLVAGIGAGSKLTKAKELGIEIMDEESWLQLINE 714 Query: 721 YNT 723 ++ Sbjct: 715 HHI 717 >gi|319408814|emb|CBI82471.1| DNA ligase [Bartonella schoenbuchensis R1] Length = 718 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 331/721 (45%), Positives = 469/721 (65%), Gaps = 16/721 (2%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 ++ L+ +A EL L +EI+ HD Y +P I D++YDAL+RR I FP+L R Sbjct: 5 AVKNLTALEAASELEWLAKEIARHDVLYNNNDQPEISDAQYDALRRRNTEIEALFPELIR 64 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + + P KIG ++ K H+ LSL+ ++ ED+ +F+ R+ RF + ++ Sbjct: 65 T---DSPSYKIGAPVSEKFEKSVHAQAMLSLDNAFSAEDVSEFVERVRRFLRLPSTQTLE 121 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 T EPKIDG +++RYE+GK V AA RGDG++GE+V+ R I IP+VL P+IIEV Sbjct: 122 MTAEPKIDGLSLSLRYEQGKLVRAATRGDGYTGENVTTNARTISDIPKVLQGEFPDIIEV 181 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246 RGEVYI + DF LN G+ +ANPRNAA+G LR+L+ +R L FF + G+ Sbjct: 182 RGEVYIRQEDFQVLNINQQKEGKIAFANPRNAAAGSLRQLDSRITASRKLKFFAYAWGEV 241 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE+ AK Q EM+ K++ GF VN + ++SYY+ ++ R +L YDIDG+VYKV Sbjct: 242 SEMPAKSQMEMVNKLKEYGFIVNPFTKVFEKVEDLISYYHFIEEQRQSLSYDIDGVVYKV 301 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ LQ +LG +RSPRW I+HKF ++A+ L IDIQ+GRTG LTPVARL P+ +GG Sbjct: 302 NDLGLQMRLGFVSRSPRWAIAHKFPAEKATALLEGIDIQVGRTGALTPVARLAPITVGGV 361 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VDII ++R DA Sbjct: 362 VVTNATLHNEDYIKGVGRKGEPIREGRDIRIGDTVIVQRAGDVIPQIVDIISSKRPKDAV 421 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 PF FP CP C S VR++ A +RCTGGL CSAQ +ER++HFVSR+AF+IEGL Sbjct: 422 PFVFPHHCPACGSHAVREVGE------AVYRCTGGLICSAQAIERIRHFVSRNAFDIEGL 475 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 GK+Q++FFF +D IR P DIFTL++RQ+ + T++ENI GFG +SV L+D+IN RR Sbjct: 476 GKKQVEFFFNIQDETLCIRSPVDIFTLEKRQKKALTRLENIEGFGSLSVRKLFDAINARR 535 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII------AHNNDDWLSLIR 600 I L RF+F+LGIRHVG A+ LA+ Y +Y F + I N++W LI Sbjct: 536 EIPLSRFLFALGIRHVGEVNAQRLARVYRNYTAFEAAVMAAIVPHDKTDEGNEEWTDLIS 595 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 + +G + +AI++FYQ N + ALL+EV+P S I K +VFTGTL Sbjct: 596 IEGIGVRVGRAIIDFYQEAHNRDVLSALLQEVTPLPEEAIATDYSPIAGKIIVFTGTLMS 655 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R +A+ +LGA S +S+KTD++I G GSKL KA++LGV+I++E+ + L+++ Sbjct: 656 MSRDEAKALAERLGAKTSGSISKKTDLLIAGLGAGSKLTKAKELGVEIIDEDSWSQLIKE 715 Query: 721 Y 721 Y Sbjct: 716 Y 716 >gi|163731899|ref|ZP_02139346.1| DNA ligase, NAD-dependent [Roseobacter litoralis Och 149] gi|161395353|gb|EDQ19675.1| DNA ligase, NAD-dependent [Roseobacter litoralis Och 149] Length = 705 Score = 601 bits (1550), Expect = e-169, Method: Composition-based stats. Identities = 287/715 (40%), Positives = 440/715 (61%), Gaps = 15/715 (2%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 +P+++L+ + A +ELS L + + + Y+ P + D+EYDA KRR A+ FP L Sbjct: 3 FVPLDSLNEKAAEEELSRLAELLEQANTAYHTKDAPFMSDAEYDAYKRRNLALEDRFPHL 62 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R+ + P + +G + KV+HS+ LSL ++ ED+ F+ RI + D Sbjct: 63 KRA---DSPTDVVGAAPSAGFAKVSHSMAMLSLANAFDDEDVFDFVQRIRKHLGLSDAEP 119 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + FT EPKIDG +++RYE G V AA RGDG GE+V+A I IP+ + P+++ Sbjct: 120 LHFTSEPKIDGLSLSLRYENGALVQAATRGDGAVGENVTANALTINDIPQRVPNA-PDVL 178 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLG 244 EVRGEVY+S DF ALN++ A G K +ANPRNAA+G LR+L+ FF + G Sbjct: 179 EVRGEVYMSHTDFEALNEKQNAAGAKAFANPRNAAAGSLRQLDARITQNRPLRFFAYAWG 238 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + K Q + +++++ LGF N + + +++ Y ++ R++L YDIDG+VY Sbjct: 239 TLTAPLGKTQSDSIERLKNLGFQTNELTDRCDGPEALLAQYRRIEERRASLDYDIDGVVY 298 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD+ LQ++LG R+ +PRW I+HKF + A T L IDIQ+GRTG L+PVARL+P+ +G Sbjct: 299 KVDDLDLQRRLGFRSTTPRWAIAHKFPAELAWTELQSIDIQVGRTGALSPVARLKPITVG 358 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +++NATLHNEDYI G D G V+R G+DIR GD V V RAG+VIPKV D+ +++R + Sbjct: 359 GVVVSNATLHNEDYIAGRDNKGGVIRDGKDIRAGDYVQVYRAGDVIPKVADVDLDKRPAE 418 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A PF FP+ CP C S +R+ A RCTGGL C AQ +ERLKHFVSR AF+I+ Sbjct: 419 AIPFVFPTTCPECGSDALREAG------DAVRRCTGGLICPAQAVERLKHFVSRAAFDID 472 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG +Q++ F+K + PADIFTL+ R ++ +++N G+G+ S TNL+D+I++ Sbjct: 473 GLGAKQIEQFYKD----GWVSEPADIFTLRDRYESGMQQLKNRDGWGEKSATNLFDAIDE 528 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 +R I L R +F+LGIRHVG + +A++Y ++ F + D W L+ + V Sbjct: 529 KREIPLARLLFALGIRHVGEAASNLIAQHYSTFDAFEKSTLAAQIEEGDAWDDLLSIDGV 588 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G ++AQ++V P +++ L+ ++ + + S + K +VFTGTL+++ R Sbjct: 589 GTVMAQSLVHTMGQPAERASIDRLVAQLKVQPSKPIVSDGSPVAGKTVVFTGTLERMTRA 648 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A+ LGA V+ +S KTD ++ G GSK +KA +LG++ ++E+ +L L++ Sbjct: 649 EAKSRAESLGAKVAGSVSAKTDFLVAGPGAGSKAKKAVELGIRTLDEDGWLALIE 703 >gi|323702801|ref|ZP_08114460.1| DNA ligase, NAD-dependent [Desulfotomaculum nigrificans DSM 574] gi|323532189|gb|EGB22069.1| DNA ligase, NAD-dependent [Desulfotomaculum nigrificans DSM 574] Length = 669 Score = 601 bits (1549), Expect = e-169, Method: Composition-based stats. Identities = 250/708 (35%), Positives = 385/708 (54%), Gaps = 48/708 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + + L +EI+YH+ YY P I D +YD L + + +A+P+L P+ P Sbjct: 7 EIKARVEELRREINYHNHQYYVLDNPTITDGQYDQLVQELLRLENAYPELV---SPDSPT 63 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GGE+ V H +P LSL ++ DLR+F R+ + + LE KID Sbjct: 64 QRVGGEIQKGFTAVQHRVPMLSLSNAFSENDLREFDRRVRSNL---PGEEVEYVLELKID 120 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I++ YE+G FV A RGDG GED++A +R I IP + +IP +EVRGE Y+ K Sbjct: 121 GLAISLWYEQGVFVRGATRGDGELGEDITANLRTIKAIPLRIKESIP-FLEVRGEAYMPK 179 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 F+ LN+ G +ANPRNAA+G LR+L+P +R L+ F++ +G Sbjct: 180 ESFVRLNEAREEAGEPLFANPRNAAAGSLRQLDPRVTASRNLSVFMYAIGHLEGANPGTH 239 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L ++ LGF VN + ++ ++ + R LPY IDGLV KV+ Q++ Sbjct: 240 ARLLGWLKDLGFRVNQHYKLCKDIEEVIRQIDKWQEQRFELPYAIDGLVIKVNSLDQQQR 299 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SPRW I++KF +QA + + DI I++GRTG+LTP A LEPV + G ++ ATLH Sbjct: 300 LGATLKSPRWAIAYKFPAEQAVSTIKDIIIRVGRTGVLTPTAILEPVQLAGTTVSKATLH 359 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED I+ +DIR+GD+ LV++AG++IP+VV + R +PF+ PS C Sbjct: 360 NEDIIR-----------QKDIRIGDQALVQKAGDIIPEVVLVFPERRTGQEKPFTMPSTC 408 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + VVR AAHRCT + + E + HFVSR A +I GLG+ ++ Sbjct: 409 PECNAPVVRLPGE------AAHRCTNKNCPAISR-EGIIHFVSRGAMDIMGLGESIVNQL 461 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 A ++ PAD++ L+ + G S NL ++I ++ SL + + Sbjct: 462 IM----AGLVQDPADLYDLKYEDLIK------LERMGARSSQNLLNAIAASKHNSLAQLL 511 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGIRHVG A+ LA+++ S L +P +G IA++IV+ Sbjct: 512 VALGIRHVGERAAKILARHFGSMSALMAAT----------VEDLTVIPEIGPKIAESIVD 561 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQ 672 ++ P N ++ L + +++ + K V TGTL+ R +AQ + + Sbjct: 562 YFARPENKTLIQRLDRAGVNMEEANQQAEPGQQPLAGKTFVITGTLEGFSRQEAQRAIEE 621 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LG VS +S+KTD ++VG+NPGSK +KAQQLG+ I+NE++F+ LL+Q Sbjct: 622 LGGKVSGSVSKKTDYVVVGENPGSKYDKAQQLGIPILNEQEFVALLKQ 669 >gi|110634347|ref|YP_674555.1| DNA ligase, NAD-dependent [Mesorhizobium sp. BNC1] gi|123162160|sp|Q11GT5|DNLJ_MESSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110285331|gb|ABG63390.1| DNA ligase, NAD-dependent [Chelativorans sp. BNC1] Length = 703 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 298/713 (41%), Positives = 438/713 (61%), Gaps = 18/713 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 IP++ L+ EQA+ EL+ L QEI HD YY P + D+EYDAL+RR AI AFP+L Sbjct: 6 IPVDELTEEQAKDELARLAQEIGRHDRLYYSEDAPEVSDAEYDALRRRNLAIEQAFPNLI 65 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R+ + P +IG KV H +P LSL+ + +D+ F+ R+ RF + + I Sbjct: 66 RA---DSPSKRIGAPAVEKFEKVRHKVPMLSLDNAFTDDDVVDFVARVRRFLKMEPHAPI 122 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 T EPKIDG ++IRYE G+ V AA RGDG GE+V+A RA+ IP VLS + PEI+E Sbjct: 123 AMTAEPKIDGLSLSIRYENGRLVSAATRGDGQVGENVTANARAVADIPNVLSGDFPEILE 182 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY++ DFLALN+ A G++ Y NPRN A+G LR+L+ + R L FF + G+ Sbjct: 183 VRGEVYMTHRDFLALNERQRAEGKQTYVNPRNTAAGSLRQLDASITAARPLKFFAYAWGE 242 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 SE+ ++ Q M++ ++ GF N + T ++ +Y+ ++ R+TL YDIDG+VYK Sbjct: 243 VSEMPSQTQMGMVEALKSYGFRTNKLMCLCETARELLEHYHAIEERRATLGYDIDGVVYK 302 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ +LQ++LG +RSPRW I+HKFA ++A T L DIDIQ+GRTG LTPVARLEPV +GG Sbjct: 303 VNDLALQQRLGYVSRSPRWAIAHKFAAEKAFTILRDIDIQVGRTGALTPVARLEPVTVGG 362 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++TNATLHN + I+ L I++GD V V+RAG+VIP+++ + R DA Sbjct: 363 VVVTNATLHNAEEIERL-----------GIKIGDTVQVQRAGDVIPQILGYAEDRRPADA 411 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + F FPS CP V + G RC+G AC Q++E L+ FVSR AF+IEG Sbjct: 412 KEFVFPSVCPCELKTPVVRDSTAGGGEGVVRRCSGEFACPFQRIEHLRLFVSRRAFDIEG 471 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG++Q++FFF+ DP ++ PADIFTL R + K+++ G+G VS NL+ +I + Sbjct: 472 LGEKQIEFFFR--DPDLPVKSPADIFTLAERDAQNIKKLKDKEGWGTVSAGNLFAAIEAK 529 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R I L+R I+ LGIRHVG A +LA+ Y S++ F I + + + +G Sbjct: 530 RTIPLDRMIYGLGIRHVGERTAVTLARGYGSWKAFHDSALAIAGGDLSAREEMDALEDIG 589 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 D + AI ++ N VEAL +V+ S + K +VFTG L+++ R + Sbjct: 590 DAVIDAIATYFAEEHNCRLVEALAAQVNVLEAERPV-ADSPVAGKTIVFTGALERMSRDE 648 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A++ +LGA V+ +S KTD+++ G GSKL+KA +LG+++++E+ + + Sbjct: 649 AKDMAERLGAKVAGSVSSKTDLVVAGPGAGSKLKKAAELGIEVIDEDMWFQRI 701 >gi|110679832|ref|YP_682839.1| DNA ligase, NAD-dependent [Roseobacter denitrificans OCh 114] gi|123172419|sp|Q166E0|DNLJ_ROSDO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|109455948|gb|ABG32153.1| DNA ligase, NAD-dependent [Roseobacter denitrificans OCh 114] Length = 705 Score = 600 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 295/715 (41%), Positives = 436/715 (60%), Gaps = 15/715 (2%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 P+++L+ + A+KELS L + + Y+ PII D+++DA KRR AI FP L Sbjct: 3 FAPLDSLTEKAAKKELSKLADLLDQANTAYHANDAPIISDADFDAYKRRNLAIEERFPHL 62 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R+ + P +++G + KV HSI LSL ++ D+ F+ RI + D + Sbjct: 63 KRA---DSPTDRVGAAPSAGFSKVVHSIAMLSLANAFDEADVSDFVQRIRKHLGLSDIEA 119 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + FT EPKIDG +++RYE G V AA RGDG GE+V+ R IP IP +S P+++ Sbjct: 120 LSFTSEPKIDGLSLSLRYENGTLVQAATRGDGAIGENVTENARTIPDIPEQISNA-PDVL 178 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLG 244 EVRGEVY+S DF ALN + G K +ANPRNAA+G LR+L+ FF + G Sbjct: 179 EVRGEVYMSHADFEALNARQASAGAKLFANPRNAAAGSLRQLDARITQSRPLRFFAYAWG 238 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 SE K Q + +++++ GF N+ + N +++ Y ++ R++L YDIDG+VY Sbjct: 239 TLSEPLGKTQMQSIERLQSFGFQTNDLTEKCNGPEELLAQYRRIEERRASLDYDIDGVVY 298 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD+ LQ++LG R+ +PRW I+HKF + A T L IDIQ+GRTG L+PVARL+PV +G Sbjct: 299 KVDDLDLQRRLGFRSTTPRWAIAHKFPAELAWTELQGIDIQVGRTGALSPVARLKPVTVG 358 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +++NATLHNEDYI G D G V+RGG+DIRVGD V V RAG+VIPKV D+ + +R D Sbjct: 359 GVVVSNATLHNEDYIAGRDNKGDVIRGGKDIRVGDFVQVYRAGDVIPKVADVDLKKRPAD 418 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A P+ FP+ CP C S +R+ A RCTGGL C AQ +ERLKHFVSR AF+I+ Sbjct: 419 AIPYVFPATCPECGSDALREAG------DAVRRCTGGLICPAQAVERLKHFVSRAAFDID 472 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG +Q++ F+K I PADIFTL+ R + +++N G+G+ S NL+D+I+ Sbjct: 473 GLGAKQIEQFYKD----GWISEPADIFTLRDRFGSGIQQLKNRDGWGEKSANNLFDAIDD 528 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 +R I L R IF+LGIRHVG + +A++Y ++ F + + + + W L+ + V Sbjct: 529 KRQIPLARLIFALGIRHVGEAASNLIAQHYSTFDAFEKSMLAAQDKDGEAWDDLLSIDGV 588 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G ++AQ+++ +++ L+ ++ S + K +VFTGTL K+ R Sbjct: 589 GTVMAQSVIHAMGQAAERASIDRLVAQLDVQPSEAVVTDGSPVAGKTVVFTGTLSKMTRA 648 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A+ LGA V+ +S KTD ++ G GSK +KA +LGV+ ++E+ +L L++ Sbjct: 649 EAKSRAESLGARVAGSVSAKTDFLVAGPGAGSKAKKAAELGVQTLDEDGWLALIE 703 >gi|49474446|ref|YP_032488.1| NAD-dependent DNA ligase LigA [Bartonella quintana str. Toulouse] gi|81646941|sp|Q6FZ81|DNLJ_BARQU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|49239950|emb|CAF26355.1| DNA ligase [Bartonella quintana str. Toulouse] Length = 719 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 338/727 (46%), Positives = 471/727 (64%), Gaps = 20/727 (2%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M K + I+ L+ +A EL L +EI+ HD Y + +P I D+EYDAL+RR I Sbjct: 1 MNKDE---IKNLTALEAESELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEA 57 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP+L RS + P +KIG ++ K H+ LSL+ ++ ED+ +FI RI RF + Sbjct: 58 LFPELIRS---DSPSHKIGAPVSEKFEKSVHAQAMLSLDNAFSSEDICEFIVRIRRFLRL 114 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 + T EPKIDG +++RYEKG+ V AA RGDG+ GE+V+A R I IP+VL Sbjct: 115 PATQILEMTAEPKIDGLSLSLRYEKGRLVCAATRGDGYIGENVTANARTISDIPKVLRGE 174 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P+IIEVRGEVY+ + +F ALN G+ +ANPRNAA+G LR+L+P +R L+FF Sbjct: 175 FPDIIEVRGEVYMRRENFQALNMSQQEKGKFVFANPRNAAAGSLRQLDPRITASRKLHFF 234 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ SE FA Q EM++K++ GF +N + T I+SYY++++ R +L YDI Sbjct: 235 AYACGEVSETFAASQMEMMKKLKEYGFFINPLTKSFKTLEEIISYYHDIEECRHSLSYDI 294 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKV++ LQ +LG +RSPRW ++HKF ++A L IDIQ+GRTG LTPVARL Sbjct: 295 DGIVYKVNDLKLQMRLGFVSRSPRWAVAHKFPAEKAMALLEGIDIQVGRTGALTPVARLA 354 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 P+ IGG ++TNA+LHNEDYIKG+ G+ +R GRDIRVGD V+V+RAG+VIP++VDII Sbjct: 355 PITIGGVVVTNASLHNEDYIKGIGHKGESIREGRDIRVGDTVIVQRAGDVIPQIVDIIAE 414 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R A F FP CP C S VR++ + RCTGGL C AQ +ER++HFVSR+ Sbjct: 415 KRPKGASAFVFPHLCPACGSHAVREVGE------SVRRCTGGLICPAQAIERIRHFVSRN 468 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+IEGLGK+Q++FFF +D A I PADIFTLQRRQ+ + ++EN+ GFG VSV LY Sbjct: 469 AFDIEGLGKKQVEFFFHIQDEALCIHTPADIFTLQRRQEKALVRLENMEGFGTVSVRKLY 528 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF----AQEI---NNIIAHNN 592 ++IN RR + L RF+F+LGIRH+G AR LA Y +Y F + + N Sbjct: 529 NAINMRRKVPLSRFLFALGIRHIGEVNARRLAHAYQNYTAFETVAMAATMPYDKVGEEGN 588 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652 + WL L + +G + +AI++FYQ N + ALL+EV+P + SS I K + Sbjct: 589 EAWLELTNIEGIGPQVGEAIIDFYQEAHNREVLAALLREVTPLDEENVMTASSPIAGKTI 648 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 VFTGTL ++ R +A+ +LGA S LS+KTD+++ G GSKL KAQ LGV++++EE Sbjct: 649 VFTGTLARMSRDEAKALAERLGAKTSGSLSKKTDLLVAGSAVGSKLAKAQGLGVEVIDEE 708 Query: 713 QFLFLLQ 719 +L L++ Sbjct: 709 AWLQLIE 715 >gi|86749131|ref|YP_485627.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris HaA2] gi|123004307|sp|Q2IYJ4|DNLJ_RHOP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|86572159|gb|ABD06716.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris HaA2] Length = 714 Score = 598 bits (1542), Expect = e-168, Method: Composition-based stats. Identities = 303/725 (41%), Positives = 442/725 (60%), Gaps = 27/725 (3%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 + I L+ +A+ E L EI H+ YYQ+ P + D+EYDAL+RR +AI FP Sbjct: 6 KPAPDIATLTKAKAKVEAMRLRLEIERHNSAYYQHDAPTVSDAEYDALRRRLEAIEAKFP 65 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 +L + P +G KV H++P LSL + +++ +F+ R+ RF + Sbjct: 66 ELV---SASSPTQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVTEFVERVQRFLRLDAV 122 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIP 182 SI EPKIDG +++RYE G+ + AA RGDG +GEDV+A +R I IP L IP Sbjct: 123 PSI--VAEPKIDGLSLSLRYEHGELMRAATRGDGFTGEDVTANVRTIADIPTTLKAKTIP 180 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 E+RGEVY+ K DFLALN G +ANPRN+A+G LR+ + +R L FF + Sbjct: 181 AACELRGEVYMLKQDFLALNKRQEEAGDTVFANPRNSAAGSLRQKDVAITASRPLKFFAY 240 Query: 242 GLGKT--SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 G+ + Q++ML ++ GF VN + + +++Y + R+ LPYDI Sbjct: 241 AWGEMSDYPMDEPTQFKMLGWLKQAGFVVNPEITLCTSVDDALAFYRRIGEQRAALPYDI 300 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD Q++LG +RSPRW I+HKFA +QA+T L IDIQ+GRTG LTPVARL+ Sbjct: 301 DGVVYKVDRLDYQERLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVARLQ 360 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG ++ NATLHNEDYIKGL G +R G DIR GD V+V+RAG+VIP++V ++++ Sbjct: 361 PVTVGGVVVQNATLHNEDYIKGLGNDGSPLRDGVDIREGDTVVVQRAGDVIPQIVSVVLD 420 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R DA P+ FP CP+C S R+ A RCTG L C AQ +ERLKHFVSR Sbjct: 421 KRPADATPYHFPHKCPVCGSHAAREEGE------AVWRCTGALICPAQAVERLKHFVSRL 474 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+I+GLG++Q+ F + ++ PADIFTLQ R + K+E+I G+G+ SV NL+ Sbjct: 475 AFDIDGLGEKQIVLFHER----GWVKEPADIFTLQAR--NAALKLEDIEGYGETSVRNLF 528 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------HNND 593 +I+ RR I L R IF+LGIRHVG A+ LA++Y + F + + ++ Sbjct: 529 AAIDARRTIELHRLIFALGIRHVGEGNAKLLARHYGTLDAFLAAMRAAAEGQTEEGNTSE 588 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653 + L + +G+++A A+VEF+ PRN+ A++ALL E+ + + + + K +V Sbjct: 589 AYQDLDNIAGIGEVVAAAVVEFFAEPRNVAALDALLAELKDVLPAEQARRDTAVAGKTVV 648 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 FTG+L K R +A+ +LGA V+ +S+KTD ++ G + GSKL KA+ LGV ++ E++ Sbjct: 649 FTGSLTKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGADAGSKLTKAKDLGVAVLTEDE 708 Query: 714 FLFLL 718 +L L+ Sbjct: 709 WLALI 713 >gi|300021787|ref|YP_003754398.1| DNA ligase, NAD-dependent [Hyphomicrobium denitrificans ATCC 51888] gi|299523608|gb|ADJ22077.1| DNA ligase, NAD-dependent [Hyphomicrobium denitrificans ATCC 51888] Length = 712 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 289/709 (40%), Positives = 441/709 (62%), Gaps = 23/709 (3%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 E++ L EI HD+ YY+ P I D++YDAL+RR + A P+L R+ P Sbjct: 22 SVEDEIARLSAEIERHDELYYRNDAPEISDADYDALRRRLTQLEDAHPELKRAG---SPS 78 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G + K+ H +P LSL ++ +D+ F+ R+ RF + + + T EPKID Sbjct: 79 EKVGSAPVAAFGKIAHDVPMLSLGNAFDDQDVVDFVQRVRRFLNLGESDELEITAEPKID 138 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYIS 194 G I+IRYE G+ V AA RGDG GE+V+A ++ I IP +L P++I++RGE+Y+ Sbjct: 139 GLSISIRYEGGRLVQAATRGDGAEGENVTANVKTIKDIPHLLVGKDVPDVIDIRGEIYLG 198 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 DF LN A G K +ANPRNAA+G LR+L+ + R L FF + G S++ + Sbjct: 199 HKDFEKLNAAQAASGGKVFANPRNAAAGSLRQLDSSITAQRPLQFFAYAWGAASKLPSDT 258 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q ++ + G PVN + + ++ YY ++S R+ L YDIDG+VYKV+ Q+ Sbjct: 259 QRGVVAAFKSWGLPVNPLMEITRSPDELLDYYRGIESKRAKLDYDIDGVVYKVNRLDYQE 318 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG +RSPRW I+HKFA ++A+T L IDIQ+GRTG LTPVA+LEPV +GG +++NATL Sbjct: 319 RLGFVSRSPRWAIAHKFAAERATTVLNKIDIQVGRTGALTPVAKLEPVTVGGVVVSNATL 378 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED I +DIR GD V+V+RAG+VIP++V++++++R A P+ FP+ Sbjct: 379 HNEDEISR-----------KDIREGDTVVVQRAGDVIPQIVEVVLDKRPQHAAPYKFPAV 427 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CPIC S VR+ + + RCTGGL C AQ ERLKHFVSR+AF+IEGLG ++++F Sbjct: 428 CPICGSHAVRESDEEGNAADVVRRCTGGLVCGAQLKERLKHFVSRNAFDIEGLGGEKIEF 487 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 FF++ I+ ADIFTL++R Q S + + GF + SV L+ +IN RR + L+RF Sbjct: 488 FFET----GRIKSAADIFTLEKRDQKSDEPLTKVRGFKETSVNKLFAAINARRTVPLDRF 543 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA--HNNDDWLSLIRVPLVGDIIAQA 611 +F+LGIRH+G A+ LAK Y +++ ++ I ++ + + + +G+ + A Sbjct: 544 LFALGIRHIGETTAKDLAKAYGTFEALRAAVDAAIQGGKGSEAYQDIDNIEGIGETVVDA 603 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 +++F+ N ++ALLKEV+ + + + VSS + K +VFTGTL K+ R++A+ Sbjct: 604 LIDFFSEQHNQEQLDALLKEVNVTAFKRVQ-VSSPVTGKTVVFTGTLTKLTRNEAKAQAE 662 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +LGA VS +S+KTD ++ G GSKL+ A+ LGV +++E+ +L L+ + Sbjct: 663 RLGAKVSGSVSKKTDYVVAGAEAGSKLDNARALGVIVLDEDGWLELIGK 711 >gi|126736446|ref|ZP_01752187.1| DNA ligase, NAD-dependent [Roseobacter sp. CCS2] gi|126713984|gb|EBA10854.1| DNA ligase, NAD-dependent [Roseobacter sp. CCS2] Length = 715 Score = 597 bits (1539), Expect = e-168, Method: Composition-based stats. Identities = 305/719 (42%), Positives = 437/719 (60%), Gaps = 16/719 (2%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 + +P+ +LS EQA KELS L +++ + Y++ P I D+ YDALKRR AI F Sbjct: 11 QTGDVPVASLSPEQATKELSWLATQLNAANTAYHRDDAPDISDATYDALKRRNAAIEAQF 70 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 PDL R + P +GG++ KV H + LSL ++ +D+ +F RI ++ Sbjct: 71 PDLKRQ---DSPSETVGGQIAEGFGKVKHVVRMLSLGNAFDDDDVHEFDQRIRKYLGLAA 127 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 D + +T EPKIDG +++RYE GK + AA RGDG +GE+V+ R I IP ++ P Sbjct: 128 DALLTYTAEPKIDGLSLSLRYEDGKLIQAATRGDGETGENVTNNARTIADIPAKVNGA-P 186 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 +++EVRGEVY+S +DF ALN VG K +ANPRNAA+G LR+L+ +R L FF + Sbjct: 187 DVLEVRGEVYMSHDDFTALNARQAEVGGKTFANPRNAAAGSLRQLDAEITKSRPLRFFAY 246 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G S A+ Q + K++ LGF N + ++++Y +++ R+ L YDIDG Sbjct: 247 AWGDLSARLAQTQSGAIAKLKTLGFSTNPLTEACDGPAAMIAHYKGIEAQRANLGYDIDG 306 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYKVD+ +LQ++LG R+ +PRW I+HKF + A T L IDIQ+GRTG L+PVARL PV Sbjct: 307 VVYKVDDLTLQRRLGFRSTTPRWAIAHKFPAELAWTVLEAIDIQVGRTGALSPVARLRPV 366 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 +GG +++NATLHNEDYI G D +G +R GRDIRVGD V V RAG+VIPKV DI + R Sbjct: 367 TVGGVVVSNATLHNEDYIAGRDGNGDPIREGRDIRVGDWVQVYRAGDVIPKVKDIDLARR 426 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 DA P+ P+ CP C S +R+ A RCTGG+ C AQ +E+LKHF+SR AF Sbjct: 427 PKDAMPYQMPARCPECGSDAIREEG------DAVRRCTGGIICPAQAVEKLKHFISRTAF 480 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +IEGLG +Q++ F+ I PADIFTL+ R +++N G+GD S NL+D+ Sbjct: 481 DIEGLGAKQVEQFYAD----GWIATPADIFTLRVRFSEGLQQLKNREGWGDKSAANLFDA 536 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I+++R ISL R I+SLGIRHVG A LA +Y S+ F Q + W L + Sbjct: 537 IDEKREISLARVIYSLGIRHVGENSAALLANHYTSWTAFEQAMTAAQIGEGHAWDELNNI 596 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 VG ++A +++ Q +++ L+KE+ + S + K +VFTGTL+++ Sbjct: 597 DGVGAVMATSLITTMQQEAERASIDQLIKELDVQDAE-ARATDSPVAGKTVVFTGTLERM 655 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R +A+ LGA VS +S KTDI+I G GSK +KA LG++ M+E+ +L L+ Sbjct: 656 TRAEAKARAETLGAKVSGSVSAKTDILIAGPGAGSKAKKAADLGIETMDEDAWLSLIGD 714 >gi|298293088|ref|YP_003695027.1| DNA ligase, NAD-dependent [Starkeya novella DSM 506] gi|296929599|gb|ADH90408.1| DNA ligase, NAD-dependent [Starkeya novella DSM 506] Length = 725 Score = 597 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 299/735 (40%), Positives = 450/735 (61%), Gaps = 32/735 (4%) Query: 1 MKKR-QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59 M R I +E L+ ++A KE + L EI+ HD YYQ P + D++YDAL+RR +AI Sbjct: 1 MSARTPDIDVEKLTADEAAKEHARLGDEIAGHDRRYYQDDAPSVSDADYDALRRRYEAIE 60 Query: 60 HAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119 FP+L + K+G + KV H +P LSL + E++ +F+ R+ RF Sbjct: 61 AQFPELKGI---DSLSEKVGAAPSSKFAKVRHRVPMLSLGNAFADEEVEEFVARVRRFLG 117 Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179 D + FT EPKIDG ++RYE G+FV AA RGDG GEDV+ +R I IP L Sbjct: 118 LSADAEVAFTAEPKIDGLSCSLRYENGQFVQAATRGDGFEGEDVTNNVRTIGEIPERLKG 177 Query: 180 NI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237 N P I EVRGEVY+ DF A+N+ A G+ +ANPRNAA+G LR+L+P +R L Sbjct: 178 NDVPGIFEVRGEVYMGHADFAAINERQSASGKPLFANPRNAAAGSLRQLDPKITASRPLR 237 Query: 238 FFVHGLGKTSE--IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295 FF + G+ ++ + + Q+ +++ G P N + ++++Y+ ++ R++L Sbjct: 238 FFAYAWGEVADGALPSDTQFGVIEAFSRWGLPTNPLTVLCRSAQELLAHYHAIEEQRASL 297 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 YDIDG+VYKVD +LQ++LG +RSPRW ++HKF ++A T+L I+IQ+GRTG LTPV Sbjct: 298 GYDIDGVVYKVDSLALQQRLGFVSRSPRWALAHKFPAQRAITQLERIEIQVGRTGALTPV 357 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG-----RDIRVGDRVLVKRAGEVI 410 A+L P+ +GG +++NA+LHNEDYIKG+ G +RG DIR GD V+++RAG+VI Sbjct: 358 AKLTPITVGGVVVSNASLHNEDYIKGIGGDGLPIRGTFNDEPVDIREGDWVVIQRAGDVI 417 Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 P+VV + + R DA+P+ FP+ CP C S VR+ A RCTGGL C AQ +E Sbjct: 418 PQVVSVELERRPKDAKPYQFPTICPACGSHAVREDGE------AVRRCTGGLICPAQAVE 471 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ--QTSTTKIENIL 528 R++HFVSRDAF+IEGLG++Q+ FF ++ PADIFTL+ R S T+++N Sbjct: 472 RIRHFVSRDAFDIEGLGEKQVQAFFDW----GLVKQPADIFTLEARDSAPDSLTRLKNRD 527 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN--- 585 G+G+ S NL+ +I RR + + RF+++LGIRH+G A+ L ++Y + + + Sbjct: 528 GWGETSAKNLFAAIAARRKVPVNRFLYALGIRHIGETNAKRLMRHYPTIEALREAALAAE 587 Query: 586 ---NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642 N+ W + + +G ++A+A+V+F+ P N A++ALLKEV+P Sbjct: 588 MPGEAYPKGNEAWAEMNAIEGIGAVVAEAVVDFFHEPNNEAALDALLKEVTPEPMEAVAG 647 Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702 + K +VFTG L+K+ R +A+ +LGA V+ +S+KTD ++ G + GSKL KA+ Sbjct: 648 GGAVAG-KTVVFTGALEKMTRDEAKAMAERLGAKVAGSVSKKTDYVVAGADAGSKLAKAR 706 Query: 703 QLGVKIMNEEQFLFL 717 +LGV ++ E+++L L Sbjct: 707 ELGVSVLTEDEWLEL 721 >gi|159044058|ref|YP_001532852.1| DNA ligase [Dinoroseobacter shibae DFL 12] gi|190359252|sp|A8LK52|DNLJ_DINSH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157911818|gb|ABV93251.1| DNA ligase [Dinoroseobacter shibae DFL 12] Length = 741 Score = 596 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 298/712 (41%), Positives = 433/712 (60%), Gaps = 15/712 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + +EALS ARKEL+ L + ++ + Y++ P + D++YDALK+R AI FPDL Sbjct: 40 VAVEALSEAAARKELARLSELLARANAEYHRDDAPSLSDADYDALKQRNAAIEARFPDLK 99 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R + P +++G + + KVTH++ LSL ++ ED+R F TRI RF +D + Sbjct: 100 RG---DSPSDQVGAAPSDTFSKVTHAVRMLSLANAFSDEDIRDFDTRIRRFLGLAEDAPL 156 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 +T EPKIDG +++RYE G V AA RGDG GE+V+A R I IP L PE++E Sbjct: 157 AYTAEPKIDGLSLSLRYEHGTLVQAATRGDGAVGENVTANARTIDDIPHRLDGA-PEVLE 215 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY+S DF LN G K +ANPRNAA+G LR+L+ R L FF + G+ Sbjct: 216 VRGEVYMSHADFAELNARQAETGGKTFANPRNAAAGSLRQLDAEITRARPLKFFAYAWGE 275 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S A+ Q E L + R GF +N + T +++ Y +++ R+TL YDIDG+VYK Sbjct: 276 ISAPLAETQTETLARFREFGFTINPLTVRCETPEDMLAQYRAIEAQRATLGYDIDGVVYK 335 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 +D+ LQ++LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV +GG Sbjct: 336 LDDLDLQRRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLAPVTVGG 395 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHNEDYI+G D +G +R G DIRVGD V V RAG+VIPK+ D+ ++ R A Sbjct: 396 VVVSNATLHNEDYIQGRDNTGAPIRWGTDIRVGDWVQVYRAGDVIPKIRDVDLSRRPEGA 455 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 PF FP+ CP C S R+ A RC+GGL C AQ +E+LKHFVSR A +I+G Sbjct: 456 APFDFPTTCPECGSDAPREPG------DAVRRCSGGLICPAQAVEKLKHFVSRGALDIDG 509 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG +Q++ F++ I PADIFTL+ R +++N G+GD S NL+ +I+ Sbjct: 510 LGAKQVEQFYRD----GWIAEPADIFTLRARFGQGLQQLKNREGWGDKSAENLFRAIDTA 565 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R + +F LGIRH+G + LA +YL+ + ++ + +D W L+ + VG Sbjct: 566 RTAPFAKVLFGLGIRHIGESASSLLANHYLTMEALLAAVDAAVDETSDAWADLLNIDGVG 625 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +++A+A+V +V LL ++ P+ + S + K LVFTGTL+ + R + Sbjct: 626 EVMARALVTTLTQEAERASVNRLLAQIDPAPATPPQVGDSPVAGKTLVFTGTLETMSRAE 685 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 A+ LGA V+ +S KTD++I G GSK KA+ LG+++++E+ + L Sbjct: 686 AKATAEALGAKVAGSVSAKTDLLIAGPGAGSKATKAEALGIEVIDEDAWRVL 737 >gi|85708859|ref|ZP_01039925.1| DNA ligase [Erythrobacter sp. NAP1] gi|85690393|gb|EAQ30396.1| DNA ligase [Erythrobacter sp. NAP1] Length = 698 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 271/717 (37%), Positives = 402/717 (56%), Gaps = 33/717 (4%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+ +S A EL L ++I++HD Y+ P I D EYDAL RR + AFP L R Sbjct: 13 PVSQMSEADAANELMRLAKQIAHHDRLYHADDDPEISDQEYDALVRRNRELEEAFPQLVR 72 Query: 68 SEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 + P ++G + S L KVTH + +SL+ +N E++ + RI R+ D + Sbjct: 73 E---DSPSKRVGHAVAASPLSKVTHEVRMMSLDNAFNREEVEDWTARIRRYLNLDADEEV 129 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 T E KIDG ++RYE GK + AA RGDG GEDV+ + I IP+ L +PE+ E Sbjct: 130 AITAEDKIDGLSCSLRYENGKLMRAATRGDGQVGEDVTPNVGYISDIPQELPDGVPEVFE 189 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY+S+ DF ALN G K +ANPRNAA+G LR+ + + R L F+ +G G Sbjct: 190 VRGEVYMSRADFAALNTAQEEAGGKLFANPRNAAAGSLRQKDASVTAKRPLKFWAYGWGA 249 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S++ + Q +M++ + GFP++ + + + ++++Y E+ R L Y+IDG+VYK Sbjct: 250 ASDVPCESQNDMMRMIESWGFPLSPFLTRTMSVDEMIAHYEEIGRQRPDLGYEIDGVVYK 309 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD Q++LG A++PRW ++HKF ++A T L IDIQ+GRTG LTPV RL PV +GG Sbjct: 310 VDRLDWQQRLGFVAKAPRWALAHKFPAEKAQTTLEAIDIQVGRTGKLTPVGRLAPVLVGG 369 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +TN TLHN D I+ L +R GDR++++RAG+VIP+V + R + Sbjct: 370 VTVTNVTLHNRDEIERL-----------GVRPGDRIVIQRAGDVIPQV--VENLTRDEER 416 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 +PF FP CP C S V + RCTGGL C AQ+ +RL+HFVSR A +I+G Sbjct: 417 EPFVFPDHCPECDSEAVAEEGE------VDVRCTGGLICPAQRTQRLEHFVSRKALDIDG 470 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 G + + FF + PADIF L+ R++ I + G+ D SV NL S+ R Sbjct: 471 FGSKTIAQFF----ALGWLESPADIFRLKDRRE----DILALEGWQDKSVDNLLASVENR 522 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R R +F LGIRHVG AR L K+ A + D L + +G Sbjct: 523 REPDAARLLFGLGIRHVGEVTARDLLKHVHELPALRTIAEKARAGDEDAASELTAIDGIG 582 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + +A+ +F+ P N+ E +L EV+P E + S + K +VFTG L+ + R + Sbjct: 583 PSVVEALGDFFHEPHNVAVWEDILSEVTPPRYEVE-TLDSPVAGKTVVFTGKLETMSRDE 641 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A+ +LGA + +S KTD+++ G GSKL+KA+QLG+++++E + ++ + Sbjct: 642 AKAQAERLGAKAAGSVSAKTDLLVAGPGAGSKLKKAEQLGIEVVDEAGWAEIVAKAG 698 >gi|83647417|ref|YP_435852.1| DNA ligase, NAD-dependent [Hahella chejuensis KCTC 2396] gi|123767368|sp|Q2SD47|DNLJ_HAHCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|83635460|gb|ABC31427.1| DNA ligase, NAD-dependent [Hahella chejuensis KCTC 2396] Length = 683 Score = 595 bits (1533), Expect = e-167, Method: Composition-based stats. Identities = 250/719 (34%), Positives = 393/719 (54%), Gaps = 45/719 (6%) Query: 12 LSI--EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 +S ++EL++L + I+ H+ YY P I D+EYD L RR I FP + Sbjct: 1 MSEVPAAIQEELNTLRETINDHNYRYYTLDDPSIPDAEYDRLMRRLREIEAEFPQ---TI 57 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++G V+H +P LSL+ + +DL F R+ ++ +D I + Sbjct: 58 TPDSPTQRVGAAPAEGFETVSHRLPMLSLDNAFEEQDLLDFDRRVRERLKEAEDARIDYC 117 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188 EPK+DG I++ Y G V RGDG +GED++A ++ + IP L P +EVR Sbjct: 118 CEPKLDGIAISLLYRDGYLVRGVTRGDGSAGEDITANVKTVKNIPLKLRGEGYPAELEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE+Y+ K F A+N + A G K + NPRNAA+G LR+L+P R L + +G Sbjct: 178 GEIYLPKAAFDAINKDAAAKGEKTFVNPRNAAAGSLRQLDPRITAKRALEMCCYSVGYFE 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 Q+++L +++ G +N+ ++ A+ + YY + S+R LPY+IDG+V+KV+ Sbjct: 238 GELPGTQHDILTQLQQWGLKINSQMKLASGAQECLDYYRHIMSVRDQLPYEIDGVVFKVN 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQ++LG +R+PRW I+HKF + T LL +D Q+GRTG +TPVARL+PV +GG Sbjct: 298 RIDLQQELGFVSRAPRWAIAHKFPAHEEMTELLAVDFQVGRTGAVTPVARLKPVFVGGVT 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN D I+ L D+ +GD V+++RAG+VIP+VV ++ + R +A P Sbjct: 358 VSNATLHNMDEIRRL-----------DVHIGDTVIIRRAGDVIPQVVSVVQDRRPENAVP 406 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P CP+C S V++ A RC+GGL CSAQ+ E +KHF SR A +I+GLG Sbjct: 407 VDRPEHCPVCGSDVLQLEGE------AVARCSGGLYCSAQRKEAIKHFASRKAMDIDGLG 460 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ + E I PA +++L+ + G+ S NL ++I + Sbjct: 461 DRLVELLVEKE----LIDSPASLYSLKAPDVAG------LERMGEKSAQNLINAIEASKQ 510 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 + RFI++LGIR VG A+ LA+++ + Q L+ P +G I Sbjct: 511 TTFARFIYALGIREVGEATAKVLAQHFPTLDLLKQATE----------EDLVEAPDIGPI 560 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKA 666 A I F+Q N+ ++ALL + ++ + + + V TG L R +A Sbjct: 561 SAGHIRSFFQQEHNLETIDALLNQGVSWPEVVVRSTETLPLSGQTAVVTGVLADYSRDEA 620 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 ++ +T+LGA VS +S KT ++ G+ GSKL KAQ LGVK+++E+ F LL+++ L Sbjct: 621 KDLLTRLGAKVSGSVSAKTGFVVAGEKAGSKLTKAQDLGVKVLDEDAFKQLLEEHQAHL 679 >gi|90418183|ref|ZP_01226095.1| DNA ligase [Aurantimonas manganoxydans SI85-9A1] gi|90337855|gb|EAS51506.1| DNA ligase [Aurantimonas manganoxydans SI85-9A1] Length = 703 Score = 595 bits (1533), Expect = e-167, Method: Composition-based stats. Identities = 297/714 (41%), Positives = 436/714 (61%), Gaps = 18/714 (2%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 +E L ++A EL L EI+ HD YY+ P + D+EYD L+RR AI FP+L R Sbjct: 5 AVETLDRDEAAAELERLAGEIAAHDRAYYREDAPTVTDAEYDTLRRRNAAIEARFPELIR 64 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + P ++G E++ K+ H++P LSL+ ++ ED+ F R+ RF + DD + Sbjct: 65 E---DSPSARVGTEVSEKFGKIRHAVPMLSLDNAFSDEDVADFAKRVRRFLKLDDDAPLA 121 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 T EPKIDG +++RYEKG+ V AA RGDG +GEDV+ R I IP L PE+ EV Sbjct: 122 ITAEPKIDGLSLSLRYEKGELVSAATRGDGATGEDVTRNARTIDDIPNRLKGKAPEVFEV 181 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246 RGEVY+S F LN G+ YANPRNAA+G LR+L+ R L FF + G+ Sbjct: 182 RGEVYMSHAAFTDLNARQAEEGKPVYANPRNAAAGSLRQLDAGITRARKLQFFAYAWGEA 241 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE+ + Q E++ + GFPVN +++ T G++++Y+ ++ R+ L YDIDG+VYKV Sbjct: 242 SEVPGETQTEVVAAIAGFGFPVNERMKRFETIEGLIAHYHAIEENRAGLGYDIDGVVYKV 301 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ +LQK+LG +RSPRW I+HKF +QA+T L I+IQ+GRTG LTPVA+L+PVN+GG Sbjct: 302 DDLALQKRLGFVSRSPRWAIAHKFPAEQATTVLRAIEIQVGRTGALTPVAKLDPVNVGGV 361 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ NATLHN + I+ L D+RVGD V ++RAG+VIP+V+ I+ ++R DA+ Sbjct: 362 MVANATLHNAEEIERL-----------DVRVGDTVQIQRAGDVIPQVLGIVADKRPEDAE 410 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 PF+FPS CP V +G RCTG AC Q+ E LK FVSR AF+IEGL Sbjct: 411 PFAFPSVCPCELKTDVVREETASGAQSVVRRCTGEFACPFQRREHLKLFVSRKAFDIEGL 470 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q+D F+ DP F +R PADIF + R Q K+++ GFG+VS NL+ +I RR Sbjct: 471 GDKQIDLFYD--DPDFQVRTPADIFRMHGRNQEGLKKLKDKEGFGEVSAKNLFAAIEARR 528 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 I L+R IFSLGIRHVG A++LA+ Y +++ F + + A + + + + +G Sbjct: 529 TIPLDRLIFSLGIRHVGETTAKTLARAYGTFEAFHEAALKVAAGDEEASGEMDALDDIGG 588 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + A F+ N+ VE L+ E+ S + + +VFTG+L+K+ R +A Sbjct: 589 AVITATARFFSEDHNLKLVEDLVAELDVQPAEQPAAT-SPVSGQTIVFTGSLEKMTRDEA 647 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA V+ +S+KTD+++ G GSKL+KA +LGV++++E+ + + + Sbjct: 648 KAMAEGLGAKVAGSVSKKTDLVVAGPGAGSKLKKAAELGVEVIDEDAWFVRIGR 701 >gi|296132371|ref|YP_003639618.1| DNA ligase, NAD-dependent [Thermincola sp. JR] gi|296030949|gb|ADG81717.1| DNA ligase, NAD-dependent [Thermincola potens JR] Length = 665 Score = 595 bits (1533), Expect = e-167, Method: Composition-based stats. Identities = 237/710 (33%), Positives = 373/710 (52%), Gaps = 47/710 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + A K ++ L ++I H+ YY +P I D+EYD L R + +PDL P Sbjct: 1 MDKAAAAKRINELRKQIEEHNYYYYVLDRPRITDAEYDRLMRELTELEQQYPDLV---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG V H P LSL ++ DL F R+ + + +E Sbjct: 58 DSPTQRVGGAPAQGFQSVRHLAPMLSLSNAFSAADLLDFDKRVRNGL---AGARVEYVVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YE G+FV A RGDG GED++ ++ I +IP L + E++EVRGE Sbjct: 115 LKIDGLAVSLLYENGRFVRGATRGDGEVGEDITQNLKTIKSIPLRLRQD-LELLEVRGEA 173 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+ K +F +N+ G +ANPRNAA+G LR+L+P R L+ F++ LG Sbjct: 174 YMPKKEFARVNEAREEAGEPLFANPRNAAAGSLRQLDPAVTAERSLDIFLYALGAVQGQA 233 Query: 251 A-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 K E L ++ LGF +N + + ++ Y R LPY+IDG+V KV+ Sbjct: 234 PVKTHLEGLHLLKDLGFRINPNIVLLPNINEVIDYCQNWTEKRHDLPYEIDGMVIKVNSL 293 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q LG ++SPRW I++KF +QA T++ I +++GRTG+LTP A LEPV + G+ I+ Sbjct: 294 AQQAALGFTSKSPRWAIAYKFPAEQAVTKVKRIYVRVGRTGVLTPTAELEPVRVAGSTIS 353 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 +ATLHNED I+ +DIR+GD V++ +AG+VIP++++++ +R Q F Sbjct: 354 SATLHNEDIIR-----------EKDIRIGDTVIIHKAGDVIPEIIEVVKEKRTGQEQEFF 402 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C V + + C + E L HFVSRDA +IEGLG Sbjct: 403 MPAECPVCHGPVRKPAGEVAVR-------CVNKDCPGRGREGLIHFVSRDAMDIEGLGPA 455 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D A ++ AD++ L + G SV NL ++I + + Sbjct: 456 VIDQLL----TAGLVKDAADLYYLNAEDLIK------LERMGKKSVENLLNAIERSKQKD 505 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L IF+LGIRHVGA + LA ++ S + L +P +G +A Sbjct: 506 LASLIFALGIRHVGARAGKILAAHFGSMDRLKEARQ----------EELTAIPEIGPKMA 555 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++IV ++++P ++ +E L + +E K V TG L+K R +AQE Sbjct: 556 ESIVAYFRDPAHLRLIERLRGAGVKMTQDIPERGERPLEGKTFVLTGALEKYSRKEAQEL 615 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + +LG VS+ +S+KTD ++ G +PGSKLEKA+QLG+ +++E+ F +++ Sbjct: 616 IEKLGGKVSSSVSKKTDYVLAGADPGSKLEKARQLGITVISEDDFERMIK 665 >gi|319899147|ref|YP_004159240.1| DNA ligase [Bartonella clarridgeiae 73] gi|319403111|emb|CBI76669.1| DNA ligase [Bartonella clarridgeiae 73] Length = 718 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 324/720 (45%), Positives = 464/720 (64%), Gaps = 16/720 (2%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ L+ +A EL L +EI+ HD YY+ +P I D+EYDAL+RR AI + FP+L R+ Sbjct: 6 IKNLTALEAASELEWLAKEIARHDVLYYRDDQPEISDAEYDALRRRNGAIENLFPELIRA 65 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P KIG ++ K H+ P LSL+ +N +D+ +F+ RI RF + + I Sbjct: 66 ---DSPTFKIGAPISEKFEKSVHAQPMLSLDNAFNFKDVSEFVERIRRFLRFPETQIIKM 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYE GK V A RG+G+ GE+V+ R I IP+VL P+IIEVR Sbjct: 123 TAEPKIDGLSLSLRYETGKLVRAVTRGNGYIGENVTTNARTIADIPQVLQGKFPDIIEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247 GEVY+ + DF LN G+ +ANPRNAA+G LR+L+ +R L FF + G+ S Sbjct: 183 GEVYMGQKDFQLLNISQQKEGKLAFANPRNAAAGSLRQLDSRITASRNLKFFAYAWGEMS 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ + Q EM+++++ GF +N + ++SYY+ ++ R +L YDIDG+VYKV+ Sbjct: 243 EMPVESQMEMMERLKEYGFIINPLTKVFEKLEDLISYYHFIEECRQSLDYDIDGIVYKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + LQ +LG +RSPRW I+HKF ++A L IDIQ+GRTG LTPVARL P+ +GG + Sbjct: 303 DLVLQTRLGFVSRSPRWAIAHKFPAEKAIALLESIDIQVGRTGALTPVARLTPITVGGVV 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +TNA+LHNEDYIKG+ + +R GRDIRVGD V+++RAG+VIP++VD++V +R D Sbjct: 363 VTNASLHNEDYIKGIGYKNEPIREGRDIRVGDTVIIQRAGDVIPQIVDVLVEKRPRDTPA 422 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP+C S VR+ A RCTGGL CSAQ +ER+ HFVSR+AF+IEG G Sbjct: 423 FVFPHLCPVCGSHAVREKGE------AVRRCTGGLICSAQAIERICHFVSRNAFDIEGFG 476 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q++FFF ++D I PADIFTLQRRQ+ S ++EN+ GFG VSV LY++IN RR Sbjct: 477 RKQVEFFFHAQDETLCIHSPADIFTLQRRQENSLKRLENMEGFGVVSVRKLYNAINARRK 536 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII------AHNNDDWLSLIRV 601 +SL RF+F+LGIRHVG A+ LA+ Y +Y F + I + N+ W+ L + Sbjct: 537 VSLSRFLFALGIRHVGEVNAQRLARAYQNYTAFETAAMSAIMPSDKFSKGNEIWVELTNI 596 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G + +AI++FYQ N + ALLKEV+P + S + K +VFTGTL+ + Sbjct: 597 EGIGSRVGEAIIDFYQEVHNRDVLLALLKEVTPFHEVPVEIDYSPLAGKIIVFTGTLEHM 656 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R +A+ +LGA S +S+K D ++ G GSKL KAQQLGV++++E+ +L L+ + Sbjct: 657 SRDEAKALAERLGAKTSNSISKKVDFLVSGFGAGSKLAKAQQLGVEVLDEKSWLKLIDGH 716 >gi|227356188|ref|ZP_03840577.1| DNA ligase [Proteus mirabilis ATCC 29906] gi|227163652|gb|EEI48568.1| DNA ligase [Proteus mirabilis ATCC 29906] Length = 675 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 246/715 (34%), Positives = 404/715 (56%), Gaps = 49/715 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + ++++ L + +H+ Y+ P I D+EYD L + A+ P+L P+ P Sbjct: 3 QNIQQQIDELRVTLRHHEYLYHVMDAPEIPDAEYDRLMNKLKALEAEHPELI---TPDSP 59 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G + +V H IP LSL+ ++ F R+ K++ I F E K+ Sbjct: 60 TQRVGALPLTAFEQVRHEIPMLSLDNAFDETTYLAFDKRLRERL--KNNEEITFCCELKL 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193 DG +++ YE G+ V AA RGDG +GE+++ +R I IP L + P IE+RGEV++ Sbjct: 118 DGLAVSLLYENGRLVQAATRGDGTTGENITENVRTIKAIPLRLYGDNIPARIEIRGEVFM 177 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIFA 251 ++ F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 178 TEKGFEHLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELP 237 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Y LQ+ + G PV++ ++ ++ +Y+ + IR L +DIDG+V KVD+ +L Sbjct: 238 TSHYARLQQFKKWGLPVSDAIKLCTGTKAVLDFYHHVAEIRPNLGFDIDGVVIKVDDIAL 297 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I++KF ++ T + D++ Q+GRTG +TPVARL+PV + G +++NA Sbjct: 298 QEELGFVSRAPRWAIAYKFQAQEQMTVIKDVEFQVGRTGAITPVARLDPVQVAGVIVSNA 357 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I+ L +R+GD V+++RAG+VIP+VV +I +R +AQ FP Sbjct: 358 TLHNADEIERL-----------GLRIGDTVVIRRAGDVIPQVVSVIEEKRPENAQEIVFP 406 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CPICQS + R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + + Sbjct: 407 TQCPICQSDIERIEGE------AVARCTGGLICAAQRKEALKHFVSRRAMDVDGMGDKII 460 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 D + E ++ PAD+F L + + + G+ S L +++ K ++ + Sbjct: 461 DQLVEKE----YVKTPADLFRLDEKILSG------LERMGEKSAKKLLNALEKAKSTTFA 510 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RFI++LGIR VG A L +++S + + + +L VP VGDI+A+ Sbjct: 511 RFIYALGIREVGEATANGLTAHFVSLEALREA----------NIEALKAVPDVGDIVAKH 560 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +V F+Q N ++ L+ ++ + + + K +V TG+L ++ R +A+ Sbjct: 561 VVNFFQEEHNKNVIDQLVNDIGITWPAPVVATHEAGDNPFAGKTVVLTGSLSQLTRDEAK 620 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + + LGA VS +S+KTD++I G+ GSKL KA +LG+ +++E++ + LL+Q Sbjct: 621 DRLVALGAKVSGSVSKKTDMVIAGEAAGSKLAKANELGITVIDEDEMIRLLEQSK 675 >gi|16130337|ref|NP_416906.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. MG1655] gi|89109225|ref|AP_003005.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. W3110] gi|170019306|ref|YP_001724260.1| NAD-dependent DNA ligase LigA [Escherichia coli ATCC 8739] gi|170082020|ref|YP_001731340.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. DH10B] gi|188495579|ref|ZP_03002849.1| DNA ligase, NAD-dependent [Escherichia coli 53638] gi|238901574|ref|YP_002927370.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952] gi|256021895|ref|ZP_05435760.1| NAD-dependent DNA ligase LigA [Escherichia sp. 4_1_40B] gi|300951893|ref|ZP_07165701.1| DNA ligase, NAD-dependent [Escherichia coli MS 116-1] gi|300957240|ref|ZP_07169472.1| DNA ligase, NAD-dependent [Escherichia coli MS 175-1] gi|301023745|ref|ZP_07187485.1| DNA ligase, NAD-dependent [Escherichia coli MS 196-1] gi|312973347|ref|ZP_07787519.1| DNA ligase, NAD-dependent [Escherichia coli 1827-70] gi|2506362|sp|P15042|DNLJ_ECOLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781324|sp|B1XA82|DNLJ_ECODH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781325|sp|B1IX60|DNLJ_ECOLC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|149242732|pdb|2OWO|A Chain A, Last Stop On The Road To Repair: Structure Of E.Coli Dna Ligase Bound To Nicked Dna-Adenylate gi|146613|gb|AAA24070.1| DNA ligase (EC 6.5.1.2) [Escherichia coli] gi|1788750|gb|AAC75464.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. MG1655] gi|85675396|dbj|BAA16282.2| DNA ligase, NAD(+)-dependent [Escherichia coli str. K12 substr. W3110] gi|169754234|gb|ACA76933.1| DNA ligase, NAD-dependent [Escherichia coli ATCC 8739] gi|169889855|gb|ACB03562.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. DH10B] gi|188490778|gb|EDU65881.1| DNA ligase, NAD-dependent [Escherichia coli 53638] gi|238860822|gb|ACR62820.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952] gi|260448502|gb|ACX38924.1| DNA ligase, NAD-dependent [Escherichia coli DH1] gi|299880716|gb|EFI88927.1| DNA ligase, NAD-dependent [Escherichia coli MS 196-1] gi|300315993|gb|EFJ65777.1| DNA ligase, NAD-dependent [Escherichia coli MS 175-1] gi|300448878|gb|EFK12498.1| DNA ligase, NAD-dependent [Escherichia coli MS 116-1] gi|309702699|emb|CBJ02028.1| DNA ligase [Escherichia coli ETEC H10407] gi|310331942|gb|EFP99177.1| DNA ligase, NAD-dependent [Escherichia coli 1827-70] gi|315137042|dbj|BAJ44201.1| NAD-dependent DNA ligase LigA [Escherichia coli DH1] gi|315615662|gb|EFU96294.1| DNA ligase, NAD-dependent [Escherichia coli 3431] gi|323936436|gb|EGB32725.1| DNA ligase [Escherichia coli E1520] gi|323941344|gb|EGB37529.1| DNA ligase [Escherichia coli E482] Length = 671 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|82777805|ref|YP_404154.1| NAD-dependent DNA ligase LigA [Shigella dysenteriae Sd197] gi|309784866|ref|ZP_07679499.1| DNA ligase, NAD-dependent [Shigella dysenteriae 1617] gi|123728534|sp|Q32DE2|DNLJ_SHIDS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|81241953|gb|ABB62663.1| DNA ligase [Shigella dysenteriae Sd197] gi|308927236|gb|EFP72710.1| DNA ligase, NAD-dependent [Shigella dysenteriae 1617] Length = 671 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTILAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGSEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++ +Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLVFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D++ F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDSREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|323170330|gb|EFZ55983.1| DNA ligase, NAD-dependent [Escherichia coli LT-68] Length = 671 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 245/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +S+ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNSLEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|301022290|ref|ZP_07186186.1| DNA ligase, NAD-dependent [Escherichia coli MS 69-1] gi|300397609|gb|EFJ81147.1| DNA ligase, NAD-dependent [Escherichia coli MS 69-1] Length = 671 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|324009590|gb|EGB78809.1| DNA ligase, NAD-dependent [Escherichia coli MS 57-2] Length = 671 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y+E++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|157156100|ref|YP_001463741.1| NAD-dependent DNA ligase LigA [Escherichia coli E24377A] gi|193066723|ref|ZP_03047750.1| DNA ligase, NAD-dependent [Escherichia coli E22] gi|194430461|ref|ZP_03062941.1| DNA ligase, NAD-dependent [Escherichia coli B171] gi|209919893|ref|YP_002293977.1| NAD-dependent DNA ligase LigA [Escherichia coli SE11] gi|218554944|ref|YP_002387857.1| NAD-dependent DNA ligase LigA [Escherichia coli IAI1] gi|218696047|ref|YP_002403714.1| NAD-dependent DNA ligase LigA [Escherichia coli 55989] gi|256017438|ref|ZP_05431303.1| NAD-dependent DNA ligase LigA [Shigella sp. D9] gi|260845052|ref|YP_003222830.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O103:H2 str. 12009] gi|260856513|ref|YP_003230404.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O26:H11 str. 11368] gi|260869108|ref|YP_003235510.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O111:H- str. 11128] gi|293446772|ref|ZP_06663194.1| DNA ligase [Escherichia coli B088] gi|300817349|ref|ZP_07097566.1| DNA ligase, NAD-dependent [Escherichia coli MS 107-1] gi|300820921|ref|ZP_07101071.1| DNA ligase, NAD-dependent [Escherichia coli MS 119-7] gi|300903139|ref|ZP_07121073.1| DNA ligase, NAD-dependent [Escherichia coli MS 84-1] gi|300921341|ref|ZP_07137704.1| DNA ligase, NAD-dependent [Escherichia coli MS 115-1] gi|301306250|ref|ZP_07212323.1| DNA ligase, NAD-dependent [Escherichia coli MS 124-1] gi|301328910|ref|ZP_07221944.1| DNA ligase, NAD-dependent [Escherichia coli MS 78-1] gi|307312589|ref|ZP_07592222.1| DNA ligase, NAD-dependent [Escherichia coli W] gi|309794543|ref|ZP_07688966.1| DNA ligase, NAD-dependent [Escherichia coli MS 145-7] gi|331669152|ref|ZP_08370000.1| DNA ligase, NAD-dependent [Escherichia coli TA271] gi|331678399|ref|ZP_08379074.1| DNA ligase, NAD-dependent [Escherichia coli H591] gi|332278439|ref|ZP_08390852.1| NAD-dependent DNA ligase LigA [Shigella sp. D9] gi|190359253|sp|A7ZPL2|DNLJ_ECO24 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781319|sp|B7LCF6|DNLJ_ECO55 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781323|sp|B7M6S1|DNLJ_ECO8A RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781327|sp|B6I4Y8|DNLJ_ECOSE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157078130|gb|ABV17838.1| DNA ligase, NAD-dependent [Escherichia coli E24377A] gi|192925627|gb|EDV80294.1| DNA ligase, NAD-dependent [Escherichia coli E22] gi|194411494|gb|EDX27836.1| DNA ligase, NAD-dependent [Escherichia coli B171] gi|209913152|dbj|BAG78226.1| DNA ligase [Escherichia coli SE11] gi|218352779|emb|CAU98567.1| DNA ligase, NAD(+)-dependent [Escherichia coli 55989] gi|218361712|emb|CAQ99309.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI1] gi|257755162|dbj|BAI26664.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O26:H11 str. 11368] gi|257760199|dbj|BAI31696.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O103:H2 str. 12009] gi|257765464|dbj|BAI36959.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O111:H- str. 11128] gi|291323602|gb|EFE63030.1| DNA ligase [Escherichia coli B088] gi|300404835|gb|EFJ88373.1| DNA ligase, NAD-dependent [Escherichia coli MS 84-1] gi|300411729|gb|EFJ95039.1| DNA ligase, NAD-dependent [Escherichia coli MS 115-1] gi|300526674|gb|EFK47743.1| DNA ligase, NAD-dependent [Escherichia coli MS 119-7] gi|300529975|gb|EFK51037.1| DNA ligase, NAD-dependent [Escherichia coli MS 107-1] gi|300838493|gb|EFK66253.1| DNA ligase, NAD-dependent [Escherichia coli MS 124-1] gi|300844712|gb|EFK72472.1| DNA ligase, NAD-dependent [Escherichia coli MS 78-1] gi|306907512|gb|EFN38016.1| DNA ligase, NAD-dependent [Escherichia coli W] gi|308121999|gb|EFO59261.1| DNA ligase, NAD-dependent [Escherichia coli MS 145-7] gi|315061736|gb|ADT76063.1| DNA ligase, NAD(+)-dependent [Escherichia coli W] gi|315256427|gb|EFU36395.1| DNA ligase, NAD-dependent [Escherichia coli MS 85-1] gi|320199974|gb|EFW74563.1| DNA ligase [Escherichia coli EC4100B] gi|323156318|gb|EFZ42476.1| DNA ligase, NAD-dependent [Escherichia coli EPECa14] gi|323159458|gb|EFZ45441.1| DNA ligase, NAD-dependent [Escherichia coli E128010] gi|323177463|gb|EFZ63051.1| DNA ligase, NAD-dependent [Escherichia coli 1180] gi|323184284|gb|EFZ69660.1| DNA ligase, NAD-dependent [Escherichia coli 1357] gi|323377683|gb|ADX49951.1| DNA ligase, NAD-dependent [Escherichia coli KO11] gi|323944634|gb|EGB40701.1| DNA ligase [Escherichia coli H120] gi|324020175|gb|EGB89394.1| DNA ligase, NAD-dependent [Escherichia coli MS 117-3] gi|324118125|gb|EGC12023.1| DNA ligase [Escherichia coli E1167] gi|331064346|gb|EGI36257.1| DNA ligase, NAD-dependent [Escherichia coli TA271] gi|331074859|gb|EGI46179.1| DNA ligase, NAD-dependent [Escherichia coli H591] gi|332100791|gb|EGJ04137.1| NAD-dependent DNA ligase LigA [Shigella sp. D9] Length = 671 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|301648064|ref|ZP_07247828.1| DNA ligase, NAD-dependent [Escherichia coli MS 146-1] gi|307139053|ref|ZP_07498409.1| NAD-dependent DNA ligase LigA [Escherichia coli H736] gi|331643032|ref|ZP_08344167.1| DNA ligase, NAD-dependent [Escherichia coli H736] gi|301073835|gb|EFK88641.1| DNA ligase, NAD-dependent [Escherichia coli MS 146-1] gi|331039830|gb|EGI12050.1| DNA ligase, NAD-dependent [Escherichia coli H736] Length = 671 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K ++NPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFSNPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|293415682|ref|ZP_06658325.1| DNA ligase [Escherichia coli B185] gi|291433330|gb|EFF06309.1| DNA ligase [Escherichia coli B185] Length = 671 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|300923365|ref|ZP_07139409.1| DNA ligase, NAD-dependent [Escherichia coli MS 182-1] gi|300420362|gb|EFK03673.1| DNA ligase, NAD-dependent [Escherichia coli MS 182-1] Length = 671 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKGFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|331673883|ref|ZP_08374646.1| DNA ligase, NAD-dependent [Escherichia coli TA280] gi|331069156|gb|EGI40548.1| DNA ligase, NAD-dependent [Escherichia coli TA280] Length = 671 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPTPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|157161876|ref|YP_001459194.1| NAD-dependent DNA ligase LigA [Escherichia coli HS] gi|253772690|ref|YP_003035521.1| NAD-dependent DNA ligase LigA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162394|ref|YP_003045502.1| NAD-dependent DNA ligase LigA [Escherichia coli B str. REL606] gi|297517308|ref|ZP_06935694.1| NAD-dependent DNA ligase LigA [Escherichia coli OP50] gi|300928569|ref|ZP_07144093.1| DNA ligase, NAD-dependent [Escherichia coli MS 187-1] gi|190359254|sp|A8A2Q7|DNLJ_ECOHS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157067556|gb|ABV06811.1| DNA ligase, NAD-dependent [Escherichia coli HS] gi|242378018|emb|CAQ32789.1| DNA ligase [Escherichia coli BL21(DE3)] gi|253323734|gb|ACT28336.1| DNA ligase, NAD-dependent [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974295|gb|ACT39966.1| NAD-dependent DNA ligase LigA [Escherichia coli B str. REL606] gi|253978462|gb|ACT44132.1| NAD-dependent DNA ligase LigA [Escherichia coli BL21(DE3)] gi|300463441|gb|EFK26934.1| DNA ligase, NAD-dependent [Escherichia coli MS 187-1] gi|323961212|gb|EGB56824.1| DNA ligase [Escherichia coli H489] gi|323970900|gb|EGB66151.1| DNA ligase [Escherichia coli TA007] gi|332344237|gb|AEE57571.1| DNA ligase, NAD-dependent LigA [Escherichia coli UMNK88] Length = 671 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|218700877|ref|YP_002408506.1| NAD-dependent DNA ligase LigA [Escherichia coli IAI39] gi|254781321|sp|B7NPU7|DNLJ_ECO7I RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218370863|emb|CAR18680.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI39] Length = 671 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 242/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V K++ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKINSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|146615|gb|AAA24071.1| lig peptide [Escherichia coli] Length = 671 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G ++ H +P LSL+ +++ E F R+ K++ + + E K Sbjct: 58 PTQRVGAAPLARFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|215487666|ref|YP_002330097.1| NAD-dependent DNA ligase LigA [Escherichia coli O127:H6 str. E2348/69] gi|312967700|ref|ZP_07781915.1| DNA ligase, NAD-dependent [Escherichia coli 2362-75] gi|254781317|sp|B7UGB2|DNLJ_ECO27 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|215265738|emb|CAS10145.1| DNA ligase, NAD(+)-dependent [Escherichia coli O127:H6 str. E2348/69] gi|312287897|gb|EFR15802.1| DNA ligase, NAD-dependent [Escherichia coli 2362-75] Length = 671 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 391/711 (54%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLIELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y+E++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------VKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|218690549|ref|YP_002398761.1| NAD-dependent DNA ligase LigA [Escherichia coli ED1a] gi|254781322|sp|B7MY64|DNLJ_ECO81 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218428113|emb|CAR09030.2| DNA ligase, NAD(+)-dependent [Escherichia coli ED1a] Length = 671 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y+E++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGLKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|293410811|ref|ZP_06654387.1| DNA ligase [Escherichia coli B354] gi|291471279|gb|EFF13763.1| DNA ligase [Escherichia coli B354] Length = 671 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|325496534|gb|EGC94393.1| NAD-dependent DNA ligase LigA [Escherichia fergusonii ECD227] Length = 671 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRSGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|320185101|gb|EFW59881.1| DNA ligase [Shigella flexneri CDC 796-83] Length = 671 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 245/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++IVG+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIVGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|238756322|ref|ZP_04617636.1| DNA ligase [Yersinia ruckeri ATCC 29473] gi|238705475|gb|EEP97878.1| DNA ligase [Yersinia ruckeri ATCC 29473] Length = 674 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 243/715 (33%), Positives = 400/715 (55%), Gaps = 47/715 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L + P+L + + Sbjct: 1 MESIIQQINQLRASLRHHEHQYHVLDAPEIPDAEYDRLMGELRELEAQHPELITA---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + V H +P LSL+ +++ E F R++ K + F E K Sbjct: 58 PTQRVGAAPLDAFEPVRHEVPMLSLDNVFDEESYLAFDKRVHDRL--KTAEPLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE G+ + AA RGDG +GE+++A +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGELIRAATRGDGTTGENITANVRTIHAIPLRLQGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F LND+ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNDDARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLVDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +E LQ+ + G PV+ V++ ++++Y++++ R+ L +DIDG+V KVD Sbjct: 236 PSSHFERLQQFKAWGLPVSERVQRCTGVDQVIAFYHQVEQDRAHLGFDIDGVVIKVDALD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQMTQVREVEFQVGRTGAITPVARLEPVLVAGVMVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP++V ++++ER DA+ F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVMVRRAGDVIPQIVGVVIDERPADAREIIF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S + R A RC+GGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PEHCPVCGSDIERIEGE------AVARCSGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + E + PAD+F L S + + G S NL ++ K + + Sbjct: 459 IEQLVEKE----YVHNPADLFNL------SAGILTGLDRMGPKSAQNLVAALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA ++ + +N D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAAHLAAHFRTLENLRAA----------DVEALKAVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F N ++ L + +S + + S K +V TG+L + R +A++ Sbjct: 559 HVLNFLSEEHNQQVIQQLEQVISWPEPQLIIATEIDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL + + Sbjct: 619 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIQVIDEAEMIRLLGESES 673 >gi|15832537|ref|NP_311310.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. Sakai] gi|168768500|ref|ZP_02793507.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4486] gi|168778374|ref|ZP_02803381.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4076] gi|208813694|ref|ZP_03255023.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4045] gi|208821178|ref|ZP_03261498.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4042] gi|209399429|ref|YP_002271890.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4115] gi|217326968|ref|ZP_03443051.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. TW14588] gi|254794365|ref|YP_003079202.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. TW14359] gi|261223146|ref|ZP_05937427.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str. FRIK2000] gi|261259301|ref|ZP_05951834.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str. FRIK966] gi|291283640|ref|YP_003500458.1| DNA ligase [Escherichia coli O55:H7 str. CB9615] gi|166215595|sp|Q8XBL5|DNLJ_ECO57 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781320|sp|B5YZV8|DNLJ_ECO5E RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|13362753|dbj|BAB36706.1| DNA ligase [Escherichia coli O157:H7 str. Sakai] gi|189003243|gb|EDU72229.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4076] gi|189362250|gb|EDU80669.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4486] gi|208734971|gb|EDZ83658.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4045] gi|208741301|gb|EDZ88983.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4042] gi|209160829|gb|ACI38262.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4115] gi|209764248|gb|ACI80436.1| DNA ligase [Escherichia coli] gi|209764250|gb|ACI80437.1| DNA ligase [Escherichia coli] gi|209764252|gb|ACI80438.1| DNA ligase [Escherichia coli] gi|209764256|gb|ACI80440.1| DNA ligase [Escherichia coli] gi|217319335|gb|EEC27760.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. TW14588] gi|254593765|gb|ACT73126.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str. TW14359] gi|290763513|gb|ADD57474.1| DNA ligase [Escherichia coli O55:H7 str. CB9615] gi|320188751|gb|EFW63410.1| DNA ligase [Escherichia coli O157:H7 str. EC1212] gi|320640925|gb|EFX10409.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. G5101] gi|320646206|gb|EFX15133.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H- str. 493-89] gi|320651712|gb|EFX20092.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H- str. H 2687] gi|320657097|gb|EFX24906.1| NAD-dependent DNA ligase LigA [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662857|gb|EFX30185.1| NAD-dependent DNA ligase LigA [Escherichia coli O55:H7 str. USDA 5905] gi|320667743|gb|EFX34654.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. LSU-61] gi|326340214|gb|EGD64018.1| DNA ligase [Escherichia coli O157:H7 str. 1125] gi|326344216|gb|EGD67977.1| DNA ligase [Escherichia coli O157:H7 str. 1044] Length = 671 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P++CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTYCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|197285679|ref|YP_002151551.1| NAD-dependent DNA ligase LigA [Proteus mirabilis HI4320] gi|254781393|sp|B4EZR2|DNLJ_PROMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|194683166|emb|CAR43788.1| DNA ligase [Proteus mirabilis HI4320] Length = 675 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 246/715 (34%), Positives = 403/715 (56%), Gaps = 49/715 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + ++++ L + +H+ Y+ P I D+EYD L + A+ P+L P+ P Sbjct: 3 QNIQQQIDELRVTLRHHEYLYHVMDAPEIPDAEYDRLMNKLKALEAEHPELI---TPDSP 59 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G + +V H IP LSL+ ++ F R+ K++ I F E K+ Sbjct: 60 TQRVGALPLTAFEQVRHEIPMLSLDNAFDETTYLAFDKRLRERL--KNNEEITFCCELKL 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193 DG +++ YE G+ V AA RGDG +GE+++ +R I IP L + P IE+RGEV++ Sbjct: 118 DGLAVSLLYENGRLVQAATRGDGTTGENITENVRTIKAIPLRLYGDNIPARIEIRGEVFM 177 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIFA 251 ++ F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 178 TEKGFEHLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELP 237 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Y LQ+ + G PV++ ++ ++ +Y+ + IR L +DIDG+V KVD+ +L Sbjct: 238 TSHYARLQQFKKWGLPVSDAIKLCTGTKAVLDFYHHVAEIRPNLGFDIDGVVIKVDDIAL 297 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I++KF ++ T + D++ Q+GRTG +TPVARL+PV + G +++NA Sbjct: 298 QEELGFVSRAPRWAIAYKFQAQEQMTVIKDVEFQVGRTGAITPVARLDPVQVAGVIVSNA 357 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I+ L +R+GD V+++RAG+VIP+VV +I +R +AQ FP Sbjct: 358 TLHNADEIERL-----------GLRIGDTVVIRRAGDVIPQVVSVIEEKRPENAQEIVFP 406 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CPICQS + R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + + Sbjct: 407 TQCPICQSDIERIEGE------AVARCTGGLICAAQRKEALKHFVSRRAMDVDGMGDKII 460 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 D + E ++ PAD+F L + + + G+ S L +++ K ++ + Sbjct: 461 DQLVEKE----YVKTPADLFRLDEKILSG------LERMGEKSAKKLLNALEKAKSTTFA 510 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RFI++LGIR VG A L +++S + + + +L VP VGDI+A+ Sbjct: 511 RFIYALGIREVGEATANGLTAHFVSLEALREA----------NIEALKAVPDVGDIVAKH 560 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +V F+Q N ++ L+ ++ + + + K +V TG+L ++ R +A+ Sbjct: 561 VVNFFQEEHNKNVIDQLVNDIGITWPAPVVATHEAGDNPFAGKTVVLTGSLSQLTRDEAK 620 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + + LGA VS +S+KTD++I G+ GSKL KA +LG+ +++E++ + LL Q Sbjct: 621 DRLVALGAKVSGSVSKKTDMVIAGEAAGSKLAKANELGITVIDEDEMIRLLDQSK 675 >gi|320196260|gb|EFW70884.1| DNA ligase [Escherichia coli WV_060327] Length = 671 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------VKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|170767420|ref|ZP_02901873.1| DNA ligase, NAD-dependent [Escherichia albertii TW07627] gi|170123754|gb|EDS92685.1| DNA ligase, NAD-dependent [Escherichia albertii TW07627] Length = 671 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 242/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQKLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y +++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLMQFKEWGLPVSDRVTLCESAEEVLAFYRKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEELGFVARAPRWAVAFKFPAQEQMTYVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATATGLAAYFGTLETLEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLIELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|281179485|dbj|BAI55815.1| DNA ligase [Escherichia coli SE15] Length = 671 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHKVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|323967844|gb|EGB63256.1| DNA ligase [Escherichia coli M863] gi|327252066|gb|EGE63738.1| DNA ligase, NAD-dependent [Escherichia coli STEC_7v] Length = 671 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|91211748|ref|YP_541734.1| NAD-dependent DNA ligase LigA [Escherichia coli UTI89] gi|117624619|ref|YP_853532.1| NAD-dependent DNA ligase LigA [Escherichia coli APEC O1] gi|218559359|ref|YP_002392272.1| NAD-dependent DNA ligase LigA [Escherichia coli S88] gi|237704934|ref|ZP_04535415.1| NAD-dependent DNA ligase LigA [Escherichia sp. 3_2_53FAA] gi|331658566|ref|ZP_08359510.1| DNA ligase, NAD-dependent [Escherichia coli TA206] gi|123084405|sp|Q1R8W1|DNLJ_ECOUT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215402|sp|A1ADS8|DNLJ_ECOK1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781318|sp|B7MHR5|DNLJ_ECO45 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91073322|gb|ABE08203.1| DNA ligase [Escherichia coli UTI89] gi|115513743|gb|ABJ01818.1| NAD-dependent DNA ligase LigA [Escherichia coli APEC O1] gi|218366128|emb|CAR03873.1| DNA ligase, NAD(+)-dependent [Escherichia coli S88] gi|226901300|gb|EEH87559.1| NAD-dependent DNA ligase LigA [Escherichia sp. 3_2_53FAA] gi|294491726|gb|ADE90482.1| DNA ligase, NAD-dependent [Escherichia coli IHE3034] gi|307626016|gb|ADN70320.1| NAD-dependent DNA ligase LigA [Escherichia coli UM146] gi|315288164|gb|EFU47564.1| DNA ligase, NAD-dependent [Escherichia coli MS 110-3] gi|323949546|gb|EGB45434.1| DNA ligase [Escherichia coli H252] gi|323955668|gb|EGB51426.1| DNA ligase [Escherichia coli H263] gi|331054231|gb|EGI26258.1| DNA ligase, NAD-dependent [Escherichia coli TA206] Length = 671 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 242/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LG+R VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGVREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|209764254|gb|ACI80439.1| DNA ligase [Escherichia coli] Length = 671 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P++CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTYCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IEQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|332089820|gb|EGI94921.1| DNA ligase, NAD-dependent [Shigella dysenteriae 155-74] Length = 671 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P+ R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPSITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVKGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWSAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|332088205|gb|EGI93327.1| DNA ligase, NAD-dependent [Shigella boydii 5216-82] Length = 671 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 245/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +S+ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLKRMGPKSAQNVVNSLEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWSAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|154245706|ref|YP_001416664.1| DNA ligase, NAD-dependent [Xanthobacter autotrophicus Py2] gi|254782313|sp|A7IG64|DNLJ_XANP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|154159791|gb|ABS67007.1| DNA ligase, NAD-dependent [Xanthobacter autotrophicus Py2] Length = 720 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 302/722 (41%), Positives = 457/722 (63%), Gaps = 27/722 (3%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 + IP++ LS +A E +L QEI+ HD YY+ P++ D+EYDAL+ R +AI FP Sbjct: 17 RAIPVDDLSPAEAASEHKALAQEITGHDAAYYREDAPVVSDAEYDALRHRYEAIEERFPG 76 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 L + K+G + KV H +P LSL ++ E++ +F+ R+ RF D+ Sbjct: 77 L---RGEDSLSEKVGAAPSEKFGKVAHKVPMLSLANCFSDEEVVEFVARVKRFLNLGPDD 133 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPE 183 + FT EPKIDG ++ YE G+ AA RGDG GEDV+ +R I IP L+ +P+ Sbjct: 134 EVAFTCEPKIDGLSCSLHYENGRLTVAATRGDGSQGEDVTQNVRTIADIPERLAGKGVPQ 193 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 I+VRGEVY++K DF ALN A K +ANPRNAA+G LR+L+ + +R L FF + Sbjct: 194 TIDVRGEVYMAKADFEALNARQAAAEEKVFANPRNAAAGSLRQLDSSITASRPLKFFAYA 253 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G+ S++ A+ Q+ +++ GF N + A G++++Y +++ R+ L YDIDG+ Sbjct: 254 WGEASDLPAETQFGVVEAFARWGFTTNPLMVVAKDAAGLIAHYRSIEAQRALLGYDIDGV 313 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 VYKV+ LQ++LG +RSPRW I+HKF +QA+T L DI+IQ+GRTG LTPVA+L PV Sbjct: 314 VYKVNSLELQRRLGFVSRSPRWAIAHKFPAEQATTVLEDIEIQVGRTGALTPVAKLTPVT 373 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 +GG ++++ATLHNED I +D+R+GD V+V+RAG+VIP+VV +I +R Sbjct: 374 VGGVVVSSATLHNEDEIAR-----------KDVRIGDTVVVQRAGDVIPQVVRVIEEKRP 422 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 ++P+ FP+ CP C S VR+++ K+GK+ A RCTGGL C AQ +ERL+HFVSR+AF+ Sbjct: 423 AGSKPYEFPTHCPACGSHAVREVDTKSGKVDAVRRCTGGLICPAQMVERLRHFVSRNAFD 482 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEGLG++Q+ F++ I PADIFTL+ R S ++EN G+G S NL+ +I Sbjct: 483 IEGLGEKQVRAFYEW----GLIASPADIFTLETRNARSLQRLENRDGWGKTSAANLFAAI 538 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN------NIIAHNNDDWL 596 +RR ++++RF+F+LGIRHVG A+ L ++Y + + N+ W Sbjct: 539 AERRTVAVDRFVFALGIRHVGETNAKRLMRHYGTVEALEAGALAAVIPGEEHPKGNEAWQ 598 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 +I + +GD++A+A++EF+ PRN V ALLKEV+P + +S + K +VFTG Sbjct: 599 EMIGIDGIGDVVAEAVIEFFGEPRNREVVTALLKEVTPEP-MEQVAAASPVSGKTVVFTG 657 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+K+ R +A+ +LGA V+ +S KT++++ G GSKLEKAQ LGV+++ E+++ Sbjct: 658 SLEKMTRDEAKAMAERLGAKVAGSVSAKTNLVVAGPGAGSKLEKAQALGVQVITEDEWFE 717 Query: 717 LL 718 L+ Sbjct: 718 LV 719 >gi|319405996|emb|CBI79627.1| DNA ligase [Bartonella sp. AR 15-3] Length = 718 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 326/720 (45%), Positives = 465/720 (64%), Gaps = 16/720 (2%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ L+ +A EL L +EI+ HD Y++ +P I D+EYDAL+RR + I FP+L R Sbjct: 6 IKNLTALEAEGELEWLAKEIARHDVLYHRDDQPEISDAEYDALRRRNEEIEALFPELVRV 65 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P +KIG ++ K H+ P LSL+ +N +D+ +FI RI RF + + I Sbjct: 66 ---DSPSSKIGAPISEKFEKSIHAQPMLSLDNAFNFKDVSEFIERIRRFLRFPETQIIEM 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYE GK V A RG+G+ GE+V+ R I IP++L P+IIEVR Sbjct: 123 TAEPKIDGLSLSLRYEAGKLVCAITRGNGYIGENVTTNARTIADIPQILQGKFPDIIEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247 GEVY+ + DF LN G+ +ANPRNAA+G LR+L+ +R L FF + G+ S Sbjct: 183 GEVYMGQKDFQLLNISQQKEGKLAFANPRNAAAGSLRQLDSQITASRNLKFFAYAWGEVS 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ A+ Q EM++K++ GF +N + ++SYY+ ++ R +L YDIDG+VYKV+ Sbjct: 243 EMPAESQIEMMEKLKEYGFIINPLTKVFEKVEDLISYYHSIEKCRQSLNYDIDGIVYKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + LQ +LG +RSPRW I+HKF ++A L DIDIQ+GRTG LTPVARL P+ +GG + Sbjct: 303 DLMLQTRLGFVSRSPRWAIAHKFPAEKAIALLEDIDIQVGRTGALTPVARLTPITVGGVV 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +TNA+LHNEDYIKG+ G+++R GRDIRVGD V+++RAG+VIP++VD++V +R Sbjct: 363 VTNASLHNEDYIKGIGHKGELIREGRDIRVGDTVIIQRAGDVIPQIVDVLVEKRPKGTPT 422 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP+C S VR+ A RCTGGL CSAQ +ER+ HFVSR+AF+IEG G Sbjct: 423 FIFPRVCPVCGSHAVREEGE------AIRRCTGGLICSAQAIERICHFVSRNAFDIEGFG 476 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q++FFF +D I PADIFTLQRRQ+ S ++EN+ GFG VSV LY++IN RR Sbjct: 477 RKQVEFFFHIQDKTLCIHSPADIFTLQRRQENSLRRLENMEGFGVVSVRKLYNAINARRK 536 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII------AHNNDDWLSLIRV 601 ISL RF+F+LGIRH+G A+ LA+ Y +Y F + I N+ W+ L + Sbjct: 537 ISLSRFLFALGIRHIGEVNAQRLARAYQNYAAFETAAMSAIMPSGKNIEGNEIWMELTNI 596 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G + +AI++FYQ N + ALLKEV+P S + K +VFTGTLQ + Sbjct: 597 EGIGSRVGEAIIDFYQEVHNRNVLLALLKEVTPLHEMPVAIDYSPVVGKTIVFTGTLQHM 656 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R +A+ +LGA S +S+KTD+++ G GSKL KAQQLG+++++E+ +L L+ + Sbjct: 657 SRDEAKSLAERLGAKTSNSISKKTDLLVAGSGAGSKLIKAQQLGIEVLDEKSWLKLIDGH 716 >gi|323188282|gb|EFZ73575.1| DNA ligase, NAD-dependent [Escherichia coli RN587/1] Length = 671 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 391/711 (54%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLIELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|283786048|ref|YP_003365913.1| DNA ligase [Citrobacter rodentium ICC168] gi|282949502|emb|CBG89116.1| DNA ligase [Citrobacter rodentium ICC168] Length = 671 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 247/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P + D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G S ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLTSFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSSDKLTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED++A +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVRAATRGDGTTGEDITANVRTIRAIPLRLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGIGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV+N V ++ ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLMQFKAWGLPVSNRVTLCDSPEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGYVARAPRWAVAFKFPAQEQMTSVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPAETRPVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PAQCPVCGSDVERVEGE------AVTRCTGGLICAAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ D++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVDALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA ++ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAFFGTLEALEAA----------SIEELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIRQLLAEGVHWPAPVAIKAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|331653837|ref|ZP_08354838.1| DNA ligase, NAD-dependent [Escherichia coli M718] gi|331048686|gb|EGI20762.1| DNA ligase, NAD-dependent [Escherichia coli M718] Length = 671 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKSKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVYNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMLRLL 669 >gi|74312947|ref|YP_311366.1| NAD-dependent DNA ligase LigA [Shigella sonnei Ss046] gi|123732314|sp|Q3YZD1|DNLJ_SHISS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|73856424|gb|AAZ89131.1| DNA ligase [Shigella sonnei Ss046] gi|323169148|gb|EFZ54825.1| DNA ligase, NAD-dependent [Shigella sonnei 53G] Length = 671 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEVLEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|260462100|ref|ZP_05810344.1| DNA ligase, NAD-dependent [Mesorhizobium opportunistum WSM2075] gi|259031960|gb|EEW33227.1| DNA ligase, NAD-dependent [Mesorhizobium opportunistum WSM2075] Length = 734 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 300/737 (40%), Positives = 441/737 (59%), Gaps = 32/737 (4%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+++LS +A EL L +EI+ HD Y+ P I D+EYDAL+RR AI FP L R Sbjct: 5 PVDSLSESEAEAELQRLAEEIAEHDRRYHTEDAPTITDAEYDALRRRNLAIEERFPGLVR 64 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + P ++G KV H++P LSL K + ED+ FI R RF+ + D I Sbjct: 65 E---DSPSLRVGAAPAEGFAKVRHAVPMLSLAKAYTDEDVTDFIERGRRFFDRDKDLDIA 121 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 FT EPKIDG ++RYEKG FV A RG+G GED++A +R I IP L + PEIIE Sbjct: 122 FTAEPKIDGLSASLRYEKGVFVQGATRGNGTVGEDITANLRTIADIPAKLKGSGWPEIIE 181 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 +RGEVY++ +F AL A G + Y NPRN A+G LR+ + + +R L FF + G Sbjct: 182 IRGEVYMTYAEFEALKARSAAAGGQDYVNPRNTAAGSLRQKDASVTASRNLKFFAYAWGY 241 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 T+E A QY +QK GF ++ + +A + +V++Y+ ++ RS+L YDIDG+VYK Sbjct: 242 TTEDPAPTQYGAVQKFADWGFKISPLMVRAKSVEELVAHYHRIEEQRSSLGYDIDGVVYK 301 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ LQ++ G PRW I+HKF +QA T + IDIQ+GRTG L PVARL PV +GG Sbjct: 302 VDQLELQRRWGFVTGEPRWAIAHKFPAEQAMTTVQKIDIQVGRTGTLAPVARLAPVTVGG 361 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ N TLHNEDYIKG D++G+ +R G D+R+GD V+++RAG+VIP++V +++++R DA Sbjct: 362 VVVENVTLHNEDYIKGFDSNGQPIRDGIDVRIGDTVVIQRAGDVIPQIVSVVIDKRPADA 421 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ FP CP+C S R++N KTGK + RCTG L C+AQ +ERL+HFVSR A +IEG Sbjct: 422 TPYEFPHTCPVCGSPATREINEKTGKEDSRRRCTGELICAAQAVERLRHFVSRGALDIEG 481 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ----------------------TSTTK 523 LG + +D FF A I+ ADIFTL+ R+ + Sbjct: 482 LGAENIDTFFN----AGLIKTAADIFTLRDRRPAVTKALAERREEQARQREAASGKTRKN 537 Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583 + ++ + L+ +I+ RR L+RFIF+LGIRH+G A LA+ + + + + Sbjct: 538 VRSVEDRNYEGLDKLFAAIDSRREPELDRFIFALGIRHIGETTAALLARTFSTIEELIR- 596 Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 + A D + +GD + A+ +F+ N RN +E LL++V P + Sbjct: 597 VGKETAAAEDPHTVFPSINGIGDTVIDALRDFFGNQRNDDVLEKLLEQVKPKPYIVTVSA 656 Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 SE+ K +VFTGTL+K+ R +A+ +LGA V+ +S KTD+++ G GSKL+ A + Sbjct: 657 DSEVAGKTIVFTGTLEKMTRSEAKAMAERLGAKVAGSVSAKTDLLVAGPGAGSKLKLASE 716 Query: 704 LGVKIMNEEQFLFLLQQ 720 LGV++++E+ +L + + Sbjct: 717 LGVEVIDEDTWLQRVGK 733 >gi|331648073|ref|ZP_08349163.1| DNA ligase, NAD-dependent [Escherichia coli M605] gi|331042933|gb|EGI15073.1| DNA ligase, NAD-dependent [Escherichia coli M605] Length = 671 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIIINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|26248787|ref|NP_754827.1| NAD-dependent DNA ligase LigA [Escherichia coli CFT073] gi|170680446|ref|YP_001744602.1| NAD-dependent DNA ligase LigA [Escherichia coli SMS-3-5] gi|227887457|ref|ZP_04005262.1| NAD-dependent DNA ligase LigA [Escherichia coli 83972] gi|300981618|ref|ZP_07175608.1| DNA ligase, NAD-dependent [Escherichia coli MS 45-1] gi|301046300|ref|ZP_07193464.1| DNA ligase, NAD-dependent [Escherichia coli MS 185-1] gi|81475373|sp|Q8FFC1|DNLJ_ECOL6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781328|sp|B1LMK5|DNLJ_ECOSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|26109193|gb|AAN81395.1|AE016764_77 DNA ligase [Escherichia coli CFT073] gi|170518164|gb|ACB16342.1| DNA ligase, NAD-dependent [Escherichia coli SMS-3-5] gi|227835807|gb|EEJ46273.1| NAD-dependent DNA ligase LigA [Escherichia coli 83972] gi|300301715|gb|EFJ58100.1| DNA ligase, NAD-dependent [Escherichia coli MS 185-1] gi|300408962|gb|EFJ92500.1| DNA ligase, NAD-dependent [Escherichia coli MS 45-1] gi|307554453|gb|ADN47228.1| DNA ligase [Escherichia coli ABU 83972] gi|315293473|gb|EFU52825.1| DNA ligase, NAD-dependent [Escherichia coli MS 153-1] gi|323977408|gb|EGB72494.1| DNA ligase [Escherichia coli TW10509] Length = 671 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|163747147|ref|ZP_02154503.1| DNA ligase, NAD-dependent [Oceanibulbus indolifex HEL-45] gi|161379708|gb|EDQ04121.1| DNA ligase, NAD-dependent [Oceanibulbus indolifex HEL-45] Length = 685 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 290/686 (42%), Positives = 419/686 (61%), Gaps = 15/686 (2%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 Y+ P I D+EYDALKRR AI +PDL R + P ++G + KV H++ Sbjct: 12 YHTEDAPEISDAEYDALKRRNAAIEARYPDLKRD---DSPTEQVGAPVAEGFGKVRHAVS 68 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL ++ E++ F RI ++ + D + +T EPKIDG +++RYE G V AA R Sbjct: 69 MLSLANAFDAEEVTDFDARIRKYLGVEADAPLAYTAEPKIDGLSLSLRYENGLLVQAATR 128 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG GE+V+A R I IP + P+++EVRGEVY+S DF ALN+ G K +A Sbjct: 129 GDGAVGENVTANARTIQDIPHQIDEA-PDLLEVRGEVYMSHADFAALNERQAERGGKTFA 187 Query: 215 NPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273 NPRNAA+G LR+L+ R L FF + G S A+ Q + ++ LGF N Sbjct: 188 NPRNAAAGSLRQLDAEITRARPLRFFAYAWGALSAPLAETQKGAIDRLAKLGFVTNPLTA 247 Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333 + +V++Y ++++ R+TL YDIDG+VYKVD+ +LQ++LG R+ +PRW I+HKFA + Sbjct: 248 LCDGPSDMVAHYAKIEAQRATLGYDIDGVVYKVDDLALQERLGFRSTTPRWAIAHKFAAE 307 Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393 A TRL IDIQ+GRTG L+PVARL+PV +GG +++NATLHNEDYIKGLD+ G +RGG+ Sbjct: 308 LAWTRLEGIDIQVGRTGALSPVARLQPVTVGGVVVSNATLHNEDYIKGLDSKGAEIRGGK 367 Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453 DIRVGD V + RAG+VIPKV D+ +++R DA PF FPS CP C S +R+ Sbjct: 368 DIRVGDWVQIYRAGDVIPKVADVDLSKRPKDAAPFVFPSVCPECGSDAIREPG------D 421 Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513 A RCTGGL C AQ +E+LKHFV+R AF+I+GLG +Q++ F+ I PADIFTL Sbjct: 422 AVRRCTGGLICPAQAVEKLKHFVARGAFDIDGLGAKQVEQFYHD----GWIAEPADIFTL 477 Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 + R +++N G+G S NL+ +I +R I + R IF+LGIRHVG + +A + Sbjct: 478 KERFGNGVQQLKNREGWGPKSADNLFQAIKDKRKIPMSRLIFALGIRHVGDAASNLIALH 537 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 Y + +F + W LI V VG ++A ++V + +++ L+ ++ Sbjct: 538 YGDWDSFETAMAEARGLEGPAWDDLIAVDGVGSVMAGSLVSAFAQEAERASIDRLVAHLT 597 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 S + K +VFTGTL+K+ R +A+ +LGA VS +S KTDI++ G Sbjct: 598 VVPTERPDTEGSPVAGKTVVFTGTLEKMSRAEAKARAERLGAKVSGSVSAKTDILVAGPG 657 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GSK +KA LG++ ++E+ +L L++ Sbjct: 658 AGSKAKKAADLGIETLDEDGWLALIE 683 >gi|261340751|ref|ZP_05968609.1| DNA ligase, NAD-dependent [Enterobacter cancerogenus ATCC 35316] gi|288317173|gb|EFC56111.1| DNA ligase, NAD-dependent [Enterobacter cancerogenus ATCC 35316] Length = 671 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 246/713 (34%), Positives = 395/713 (55%), Gaps = 48/713 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++L+ L + +H+ Y+ P + D+EYD L R + P+L P+ Sbjct: 1 MDSIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G E + +V H +P LSL+ +++ E F R+ K +++ + E K Sbjct: 58 PTQRVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSSDALTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV+N V+ ++ ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L +R+GD+V+++RAG+VIP+VV+++ +ER D + F Sbjct: 356 ATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVESERPDDTRAIEF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PSHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLDRMGPKSAQNVVNALETAKKTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEKA----------SIDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNREVIGKLLAEGISWPAPVVVNAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL + Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGE 671 >gi|218548148|ref|YP_002381939.1| NAD-dependent DNA ligase LigA [Escherichia fergusonii ATCC 35469] gi|331684067|ref|ZP_08384663.1| DNA ligase, NAD-dependent [Escherichia coli H299] gi|254781331|sp|B7LL73|DNLJ_ESCF3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218355689|emb|CAQ88301.1| DNA ligase, NAD(+)-dependent [Escherichia fergusonii ATCC 35469] gi|315298233|gb|EFU57493.1| DNA ligase, NAD-dependent [Escherichia coli MS 16-3] gi|331079019|gb|EGI50221.1| DNA ligase, NAD-dependent [Escherichia coli H299] Length = 671 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|73541575|ref|YP_296095.1| NAD-dependent DNA ligase [Ralstonia eutropha JMP134] gi|123732913|sp|Q470D2|DNLJ_RALEJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|72118988|gb|AAZ61251.1| NAD-dependent DNA ligase [Ralstonia eutropha JMP134] Length = 711 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 259/726 (35%), Positives = 383/726 (52%), Gaps = 54/726 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P L A + + L E+ H+ YY P I D+EYDAL A+ P+L Sbjct: 15 PAGGLPPATAAERVQWLRDELDRHNYQYYVLDAPTIPDAEYDALFTELQALEAEHPELL- 73 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 P+ P ++GG + V H +P LSL ++ ED+ F R + + Sbjct: 74 --TPDSPTQRVGGAPLSAFDTVRHRVPMLSLNNGFSDEDVTGFDRRCAQGLGRSAAAGGE 131 Query: 124 -------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176 + + E K DG +++RYE G+ V AA RGDG +GEDV+ +R I IP Sbjct: 132 QDLFSAAEGVEYACELKFDGLAMSLRYEDGRLVQAATRGDGETGEDVTVNVRTIKAIPLK 191 Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRY 235 L P ++EVRGEV++ + DF LN G K + NPRNAA+G LR+L+P R Sbjct: 192 LRGAAPAVLEVRGEVFMYRRDFDKLNARQAEAGDKTFVNPRNAAAGSLRQLDPRITAKRP 251 Query: 236 LNFFVHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 L+FF +GLG+ ML +G PV N G++ +Y ++ R Sbjct: 252 LSFFAYGLGELQGIERPATHSAMLDGFATMGLPVCNERAVVKGAQGLLDFYRKVGEKRDQ 311 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 LPYDIDG+VYKV+ + Q+QLG +R+PR+ ++HKF ++ +T + DI++Q+GRTG +TP Sbjct: 312 LPYDIDGVVYKVNALAEQEQLGFVSRAPRFALAHKFPAQEMTTIVEDIEVQVGRTGAITP 371 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VARL+PV +GG +TNATLHNED ++ +D+ +GD V+V+RAG+VIP+VV Sbjct: 372 VARLQPVFVGGVTVTNATLHNEDEVRR-----------KDVHIGDTVIVRRAGDVIPEVV 420 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 +++ R DA+ F P+ CP+C S + R + A RCTGGL C+AQ+ + L H Sbjct: 421 AVVLERRPDDARAFVMPTACPVCGSHIERLEDE------AIARCTGGLICAAQRKQALLH 474 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 F R A +IEGLG + ++ +R PAD++ L K+ + D S Sbjct: 475 FAQRRAMDIEGLGDKVVEQLVDQ----GIVRTPADLYKL------GVAKLAALDRMADKS 524 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 NL +I R+ + RFIFSLGIRHVG A+ LA+++ D Sbjct: 525 AGNLVAAIEASRSTTFNRFIFSLGIRHVGEATAKDLARHFGKLDGLMVA----------D 574 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLV 653 +L+ V VG ++AQ+IV F+ P N+ +E L + + K V Sbjct: 575 EAALLEVNDVGPVVAQSIVNFFGEPHNVEVIEQLRAAGVHWPESEPVARAPAPLAGKTFV 634 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 TGTL + R A+E + GA V+ +S+KTD ++ G GSKL+KA+ LGV +++E Sbjct: 635 LTGTLPSLSREAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLDKAEALGVPVLDEAG 694 Query: 714 FLFLLQ 719 L LL+ Sbjct: 695 MLALLE 700 >gi|332092973|gb|EGI98039.1| DNA ligase, NAD-dependent [Shigella boydii 3594-74] Length = 671 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELCELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|332162521|ref|YP_004299098.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606605|emb|CBY28103.1| DNA ligase [Yersinia enterocolitica subsp. palearctica Y11] gi|325666751|gb|ADZ43395.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860741|emb|CBX71032.1| DNA ligase [Yersinia enterocolitica W22703] Length = 672 Score = 592 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 246/712 (34%), Positives = 403/712 (56%), Gaps = 47/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L ++ + P+L + + Sbjct: 1 MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELITN---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R++ ++ D + F E K Sbjct: 58 PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRAD--PLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPLAGFEQLNNEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + R G PV++ V+ ++++Y +++ R L +DIDG+V KVD Sbjct: 236 PRSHIQRLMQFRAWGLPVSDRVKLCTGSEQVIAFYRQVEQDRGGLGFDIDGVVIKVDSLD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++++R DA+ +F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMDQRPQDAKEITF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S + R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PEHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+FTL K+ + G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLFTLTA------GKLTGLDRMGPKSAQNLIVALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + +N D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRNLENLRAA----------DIEALKSVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 +V F N +EAL K ++ + + + S K +V TG+L + R +A++ Sbjct: 559 HVVNFLGEEHNQKVIEALEKVITWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL + Sbjct: 619 RLAALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLLGE 670 >gi|330912204|gb|EGH40714.1| DNA ligase [Escherichia coli AA86] Length = 671 Score = 592 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIIINVEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|319782858|ref|YP_004142334.1| DNA ligase, NAD-dependent [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168746|gb|ADV12284.1| DNA ligase, NAD-dependent [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 734 Score = 592 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 296/737 (40%), Positives = 440/737 (59%), Gaps = 32/737 (4%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+++LS +A EL L +EI+ HD Y+ P+I D+EYDAL RR AI FP L R Sbjct: 5 PVDSLSESEAEAELKRLAEEIAEHDRRYHTEDAPVITDAEYDALARRNLAIEERFPALVR 64 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + P ++G KV H++P LSL K + +D+ FI R RF+ + + I Sbjct: 65 E---DSPSLRVGAAPAEGFTKVRHAVPMLSLAKAYTDDDVTDFIERGRRFFDRDKELDIA 121 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 FT EPKIDG ++RYE G FV A RG+G GED++A ++ I IP L + PE IE Sbjct: 122 FTAEPKIDGLSASLRYENGVFVQGATRGNGAVGEDITANLKTIADIPAKLKGSGWPETIE 181 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 +RGEVY++ +F AL AVG + Y NPRN A+G LR+ +P+ +R L FF + G Sbjct: 182 IRGEVYMTYAEFEALKQRSAAVGGQDYVNPRNTAAGSLRQKDPSVTASRNLKFFAYAWGY 241 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 T+ A QY+ +QK GF ++ + +A + ++++Y+ ++ RS L YDIDG+VYK Sbjct: 242 TTADPAPTQYDSVQKFAEWGFKISPLMVRAKSAEELIAHYHRIEEQRSALGYDIDGVVYK 301 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ LQ++ G PRW I+HKF +QA T + IDIQ+GRTG L PVARL PV +GG Sbjct: 302 VDQLELQRRWGFVTGEPRWAIAHKFPAEQAMTTVQKIDIQVGRTGTLAPVARLAPVTVGG 361 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ N TLHNEDYIKGLD++G+ +R G D+R+GD V+++RAG+VIP++V +++++R DA Sbjct: 362 VVVENVTLHNEDYIKGLDSTGQPIRDGIDVRIGDTVVIQRAGDVIPQIVSVVIDKRPADA 421 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ FP CPIC S R++N KTGK + RCTG L C AQ +E L+HFVSR A +IEG Sbjct: 422 VPYEFPHTCPICGSPATREINEKTGKEDSRRRCTGELICPAQAVEGLRHFVSRGALDIEG 481 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ----------------------TSTTK 523 LG + +D FF A IR ADIFTL+ R+ + Sbjct: 482 LGAENIDTFFN----AGLIRTAADIFTLRDRRPAVTRALAERREEQARQREAASGKTRKN 537 Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583 + ++ + L+ +I+ RR L+RFIF+LGIRH+G A LA+ + + + + Sbjct: 538 VRSVEDRNYEGLDKLFAAIDSRREPELDRFIFALGIRHIGETTAAVLARTFSTIEELIR- 596 Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 + A D V +GD + A+ +F+ N RN ++ALL++V P + Sbjct: 597 VGKETAAAEDPHSVFPSVNGIGDTVIDALRDFFGNERNDDVLDALLRQVKPKPYIVNVSA 656 Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 SE+ K +VFTG+L+K+ R +A+ +LGA V+ +S KTD+++ G GSKL+ A + Sbjct: 657 DSEVAGKTVVFTGSLEKMTRSEAKAMAERLGAKVAGSVSAKTDLVVAGPGAGSKLKLASE 716 Query: 704 LGVKIMNEEQFLFLLQQ 720 LG+++++E+ +L + + Sbjct: 717 LGIEVIDEDAWLARIGK 733 >gi|300940348|ref|ZP_07154941.1| DNA ligase, NAD-dependent [Escherichia coli MS 21-1] gi|300454839|gb|EFK18332.1| DNA ligase, NAD-dependent [Escherichia coli MS 21-1] Length = 671 Score = 592 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + ALL E + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISALLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|15802944|ref|NP_288973.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 EDL933] gi|12516784|gb|AAG57530.1|AE005471_7 DNA ligase [Escherichia coli O157:H7 str. EDL933] Length = 671 Score = 592 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 390/711 (54%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y + R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYXXXEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P++CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTYCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWXAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|82544871|ref|YP_408818.1| NAD-dependent DNA ligase LigA [Shigella boydii Sb227] gi|123741957|sp|Q31Y68|DNLJ_SHIBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|81246282|gb|ABB66990.1| DNA ligase [Shigella boydii Sb227] Length = 671 Score = 592 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELCELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKLAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|296104078|ref|YP_003614224.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058537|gb|ADF63275.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 671 Score = 592 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 242/713 (33%), Positives = 394/713 (55%), Gaps = 48/713 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++++ L + +H+ Y+ P + D+EYD L R + P+L P+ Sbjct: 1 MDSIEQQITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRDLEAQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G E + +V H +P LSL+ +++ E F R+ K +++ + E K Sbjct: 58 PTQRVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSSDALTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV+N V+ ++ ++++Y +++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSNRVQLCDSPEAVLAFYRKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L +R+GD+V+++RAG+VIP+VV+++ +ER D + F Sbjct: 356 ATLHNADEIDRL-----------GLRIGDKVVIRRAGDVIPQVVNVVQSERPDDTRAIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLDRMGPKSAQNVVNALEAAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLDALEKA----------SIEELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL++ + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGKLLEQGIKWPAPVVVNAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL + Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671 >gi|319404500|emb|CBI78105.1| DNA ligase [Bartonella rochalimae ATCC BAA-1498] Length = 725 Score = 592 bits (1525), Expect = e-166, Method: Composition-based stats. Identities = 329/720 (45%), Positives = 465/720 (64%), Gaps = 16/720 (2%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ L+ +A EL L +EI+ HD Y++ +P I D+EYDAL RR + I FP+L R+ Sbjct: 6 IKNLTALEAASELEWLAKEIARHDVLYHRDDQPEISDAEYDALCRRNEEIEALFPELIRA 65 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P +KIG ++ K H+ P LSL+ +N ED+ +FI RI RF + + +I Sbjct: 66 ---DSPSSKIGAPISEKFEKSIHAQPMLSLDNAFNFEDVSEFIERIRRFLRLPETQTIEM 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYE GK V A RG+G GE+V+ R I IP +L N P+IIEVR Sbjct: 123 TAEPKIDGLSLSLRYEAGKLVRAITRGNGSIGENVTTNARTIADIPEILQGNFPDIIEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVY+ + DF LN G+ +ANPRNAA+G LR+L+ +R L FF + G+ S Sbjct: 183 GEVYMGQKDFQLLNINQQKEGKLVFANPRNAAAGSLRQLDSRITASRNLKFFAYAWGEVS 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ A+ Q M++K++ GF +N + ++SYY+ ++ R +L YDIDG+VYKV+ Sbjct: 243 EMPAESQIGMMKKLKEYGFIINPLTKVFEKVEDLISYYHSIEECRQSLDYDIDGIVYKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + LQ +LG ARSPRW I+HKF ++A L DIDIQ+GRTG LTPVARL P+ +GG + Sbjct: 303 DLMLQTRLGFVARSPRWAIAHKFPAEKAIAFLEDIDIQVGRTGALTPVARLTPITVGGVV 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ITNA+LHNEDYIKG+ G+++R GRDIRVGD V+++RAG+VIP++VD++V +R D Sbjct: 363 ITNASLHNEDYIKGIGHKGELIREGRDIRVGDTVIIQRAGDVIPQIVDVLVEKRSKDTPA 422 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP+C S VR+ RCTGGL CSAQ +ER+ HFVSR+AF+IEG G Sbjct: 423 FIFPHVCPVCGSHAVREEGET------VRRCTGGLICSAQAIERICHFVSRNAFDIEGFG 476 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q++FFF ++D IR P DIFTLQRRQ+ S ++EN+ GFG VSV LY++IN RR Sbjct: 477 RKQVEFFFHAQDKTLCIRSPVDIFTLQRRQENSLRRLENMEGFGVVSVRKLYNAINARRE 536 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII------AHNNDDWLSLIRV 601 ISL RF+F+LGIRH+G A+ LA+ Y +Y F I + N+ W L + Sbjct: 537 ISLSRFLFALGIRHIGEVKAQRLARAYQNYIAFETAAMTAIMPPDKNSEGNEIWKELTNI 596 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G + +AI++FYQ N + ALLKEV+P S I K +VFTGTL+ + Sbjct: 597 EGIGSRVGEAIIDFYQEVHNRDVLSALLKEVTPLHEAPIAIDYSPIVEKIIVFTGTLEHM 656 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R +A+ +LGA S +S+KTD+++ G GSKL KAQQLG+++++E+ +L L+ ++ Sbjct: 657 SRDEAKSLAERLGAKTSNSISKKTDLLVAGFGAGSKLVKAQQLGIEVLDEKNWLKLIDEH 716 >gi|320180401|gb|EFW55332.1| DNA ligase [Shigella boydii ATCC 9905] Length = 671 Score = 592 bits (1525), Expect = e-166, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELCELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWSAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|24113756|ref|NP_708266.1| NAD-dependent DNA ligase LigA [Shigella flexneri 2a str. 301] gi|30063805|ref|NP_837976.1| NAD-dependent DNA ligase LigA [Shigella flexneri 2a str. 2457T] gi|110806352|ref|YP_689872.1| NAD-dependent DNA ligase LigA [Shigella flexneri 5 str. 8401] gi|81723177|sp|Q83K81|DNLJ_SHIFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|122366427|sp|Q0T298|DNLJ_SHIF8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|24052834|gb|AAN43973.1| DNA ligase [Shigella flexneri 2a str. 301] gi|30042060|gb|AAP17786.1| DNA ligase [Shigella flexneri 2a str. 2457T] gi|110615900|gb|ABF04567.1| DNA ligase [Shigella flexneri 5 str. 8401] gi|281601828|gb|ADA74812.1| DNA ligase, NAD-dependent [Shigella flexneri 2002017] gi|313650866|gb|EFS15266.1| DNA ligase, NAD-dependent [Shigella flexneri 2a str. 2457T] gi|332755453|gb|EGJ85817.1| DNA ligase, NAD-dependent [Shigella flexneri K-671] gi|332756263|gb|EGJ86614.1| DNA ligase, NAD-dependent [Shigella flexneri 2747-71] gi|333002064|gb|EGK21630.1| DNA ligase, NAD-dependent [Shigella flexneri K-218] Length = 671 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKLAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|333001543|gb|EGK21111.1| DNA ligase, NAD-dependent [Shigella flexneri VA-6] gi|333002206|gb|EGK21770.1| DNA ligase, NAD-dependent [Shigella flexneri K-272] gi|333016032|gb|EGK35364.1| DNA ligase, NAD-dependent [Shigella flexneri K-227] Length = 671 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKLAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|218705919|ref|YP_002413438.1| NAD-dependent DNA ligase LigA [Escherichia coli UMN026] gi|293405854|ref|ZP_06649846.1| DNA ligase [Escherichia coli FVEC1412] gi|298381604|ref|ZP_06991203.1| DNA ligase [Escherichia coli FVEC1302] gi|254781326|sp|B7N602|DNLJ_ECOLU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218433016|emb|CAR13911.1| DNA ligase, NAD(+)-dependent [Escherichia coli UMN026] gi|284922366|emb|CBG35453.1| DNA ligase [Escherichia coli 042] gi|291428062|gb|EFF01089.1| DNA ligase [Escherichia coli FVEC1412] gi|298279046|gb|EFI20560.1| DNA ligase [Escherichia coli FVEC1302] Length = 671 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQERLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|110642595|ref|YP_670325.1| NAD-dependent DNA ligase LigA [Escherichia coli 536] gi|191174600|ref|ZP_03036093.1| DNA ligase, NAD-dependent [Escherichia coli F11] gi|300997757|ref|ZP_07181842.1| DNA ligase, NAD-dependent [Escherichia coli MS 200-1] gi|306814500|ref|ZP_07448662.1| NAD-dependent DNA ligase LigA [Escherichia coli NC101] gi|122958158|sp|Q0TF55|DNLJ_ECOL5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110344187|gb|ABG70424.1| DNA ligase [Escherichia coli 536] gi|190905126|gb|EDV64772.1| DNA ligase, NAD-dependent [Escherichia coli F11] gi|222034142|emb|CAP76883.1| DNA ligase [Escherichia coli LF82] gi|300304141|gb|EFJ58661.1| DNA ligase, NAD-dependent [Escherichia coli MS 200-1] gi|305851894|gb|EFM52346.1| NAD-dependent DNA ligase LigA [Escherichia coli NC101] gi|312947007|gb|ADR27834.1| NAD-dependent DNA ligase LigA [Escherichia coli O83:H1 str. NRG 857C] gi|324011127|gb|EGB80346.1| DNA ligase, NAD-dependent [Escherichia coli MS 60-1] Length = 671 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLHLL 669 >gi|114319842|ref|YP_741525.1| DNA ligase, NAD-dependent [Alkalilimnicola ehrlichii MLHE-1] gi|122312282|sp|Q0AAV2|DNLJ_ALHEH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|114226236|gb|ABI56035.1| DNA ligase, NAD-dependent [Alkalilimnicola ehrlichii MLHE-1] Length = 673 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 257/715 (35%), Positives = 391/715 (54%), Gaps = 47/715 (6%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A + + + +L +EI HD YY P+I D+EYDAL A+ P+L Sbjct: 2 AQTGTDPQARIEALRREIREHDHRYYVLDAPVIADAEYDALMAELQALEAEHPELI---T 58 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P+ P ++ G +VTH+ P LSL+ + DL +F R+ + + + + Sbjct: 59 PDSPSQRVAGRPAEGFGEVTHAEPMLSLDNAFEEADLAEFDRRVRQALGL---DPVVYVA 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189 EPK+DG ++IRYE G+ V A RGDG GE ++ +R I ++P L P ++EVRG Sbjct: 116 EPKLDGLSVSIRYEDGRLVRAGTRGDGRVGEAITENVRTIRSVPLRLRGEGWPPVMEVRG 175 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EV I + DF LN++ +A G +P+ANPRNAA+G LR+L+P R L FF G+ Sbjct: 176 EVVIRRADFERLNEQRLADGERPFANPRNAAAGSLRQLDPRITARRRLTFFTFGVAAAGR 235 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + A E+L K+ GF VN V + G YY + + R L ++IDG+VYKVD+ Sbjct: 236 LAASHH-EVLDKLAGWGFRVNERVERVRGLDGCREYYQRLLADRDELSFEIDGVVYKVDD 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +++LG AR+PRW I+ K ++A+T + I +GRTG +TPVA LEPV +GG + Sbjct: 295 LDAREELGFTARAPRWAIAWKLPAQEATTVVRRILPSVGRTGAITPVAELEPVGVGGVTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHN D ++ +D+R GD V+V+RAG+VIP++ ++ +R A+P+ Sbjct: 355 SRATLHNLDEVRR-----------KDVRKGDTVMVRRAGDVIPEITAVVTEKRPEGAEPW 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 + P+ CP+C S V+R + A HRC GGL C AQ+ L HF SR A +I+GLG+ Sbjct: 404 AMPAECPVCGSEVLRLDDE------AVHRCMGGLYCPAQREGALLHFASRKALDIDGLGE 457 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + +R PAD+FTL+ Q + GD S NL +++K R Sbjct: 458 KVVSQLVER----GMVRSPADLFTLEHCQLAG------LERMGDKSADNLVAALDKARRT 507 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF+++LGI+HVG AR LA+++ S + D +L P VG ++ Sbjct: 508 TLPRFLYALGIQHVGEVTARRLAEHFGSLEAIMNA----------DESALAETPDVGPVV 557 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 AQAI F+ P N V+AL + + + V TGTL + R +A+ Sbjct: 558 AQAIAHFFAEPHNREVVQALRAAGVTWEEVDPAERGEQPLAGRTFVLTGTLSGMTRDEAK 617 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + LGA VS +S+KTD ++ G+ GSKL KA+ LGV++++E+ LLQ++ Sbjct: 618 AALEALGARVSGSVSKKTDYLVAGEKAGSKLAKAESLGVEVLDEQALQALLQEHG 672 >gi|324112923|gb|EGC06899.1| DNA ligase [Escherichia fergusonii B253] Length = 671 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRSGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HAHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|331663971|ref|ZP_08364881.1| DNA ligase, NAD-dependent [Escherichia coli TA143] gi|331059770|gb|EGI31747.1| DNA ligase, NAD-dependent [Escherichia coli TA143] Length = 671 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 242/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQERLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|156933031|ref|YP_001436947.1| NAD-dependent DNA ligase LigA [Cronobacter sakazakii ATCC BAA-894] gi|166215403|sp|A7MKW4|DNLJ_ENTS8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|156531285|gb|ABU76111.1| hypothetical protein ESA_00834 [Cronobacter sakazakii ATCC BAA-894] Length = 672 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 251/714 (35%), Positives = 398/714 (55%), Gaps = 49/714 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P + D+EYD L R A+ A P+L P+ Sbjct: 1 MESIEEKLTQLRTTLRHHEFLYHVMDAPEVPDAEYDRLMRELRALEEAHPELV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G +V H +P LSL+ +++ F R+ K +++ + E K Sbjct: 58 PTQRVGAAPLTEFSQVRHEVPMLSLDNVFDEASFLAFNKRVQDRL--KSTDALVYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE G V AA RGDG +GED++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGLLVRAATRGDGTTGEDITLNVRTIRAIPLKLRGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGVGLLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + E LQ+ + G PV++ +R T ++++Y+++++ R TL +DIDG+V KVD Sbjct: 236 PRSHMERLQQFKAWGLPVSDRIRLVKTPEEVLAFYHQVEADRPTLGFDIDGVVIKVDSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PAQCPVCGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S NL +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNLVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA ++ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLEALINA----------SIDDLQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + F++ N + L +EV + + S K +V TGTL ++ R A Sbjct: 559 HVFNFFEEESNRAVIRDLTEEVGIHWPAPQVVKAEEIDSPFAGKTVVLTGTLSQMSRDDA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL + Sbjct: 619 KARLAALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGE 672 >gi|238792031|ref|ZP_04635667.1| DNA ligase [Yersinia intermedia ATCC 29909] gi|238728662|gb|EEQ20180.1| DNA ligase [Yersinia intermedia ATCC 29909] Length = 670 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 243/712 (34%), Positives = 397/712 (55%), Gaps = 47/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L ++ ++ P+L + Sbjct: 1 MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRSLEAQHPELI---THDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ + F R++ K + F E K Sbjct: 58 PTQRVGAAPLDAFEQVRHEVPMLSLDNVFDEDSYLAFDKRVHDRL--KSAEPLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP L P+ +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGENIPQRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF- 250 + + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNEEARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLMFFCYGVGLLDGGDL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV+N V+ ++++Y +++ R++L +DIDG+V KVD Sbjct: 236 PRSHIQRLMQFKAWGLPVSNRVKLCTGSDEVIAFYRQVEQDRTSLGFDIDGVVIKVDSLD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ D++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFQAQEQITQVRDVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L IR+GD V+++RAG+VIP+VV +++ +R D + F Sbjct: 356 ATLHNADEIERL-----------GIRIGDTVIIRRAGDVIPQVVGVVMEQRPQDTKEIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S + R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PQHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+F L K+ + G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLFELTA------GKLTGLDRMGPKSAQNLIAALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + N D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFCNLDNLRAA----------DIDALKSVPDVGEVVAR 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 + F N + AL K +S + + + S K +V TG+L + R +A++ Sbjct: 559 HVRNFLSEEHNQKVIAALEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL + Sbjct: 619 RLAALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLLGE 670 >gi|123441550|ref|YP_001005536.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166216254|sp|A1JLA4|DNLJ_YERE8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|122088511|emb|CAL11304.1| DNA ligase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 672 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 246/712 (34%), Positives = 402/712 (56%), Gaps = 47/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L ++ + P+L + + Sbjct: 1 MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELITN---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R++ ++ D + F E K Sbjct: 58 PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRAD--PLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + F LNDE G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPLAGFEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV+ V+ ++++Y +++ R L +DIDG+V KVD Sbjct: 236 PRSHIQRLMQFKAWGLPVSERVKLCTGSEQVIAFYRQVEQDRGGLGFDIDGVVIKVDSLD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++++R DA+ +F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMDQRPQDAKEITF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S + R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PEHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+FTL K+ + G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLFTLTA------GKLTGLDRMGPKSAQNLIVALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + +N D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRNLENLRAA----------DIEALKSVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 +V F N +EAL K ++ + + + S K +V TG+L + R +A++ Sbjct: 559 HVVNFLGEEHNQKVIEALEKVITWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL + Sbjct: 619 RLAALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLLGE 670 >gi|22125389|ref|NP_668812.1| NAD-dependent DNA ligase LigA [Yersinia pestis KIM 10] gi|45442391|ref|NP_993930.1| NAD-dependent DNA ligase LigA [Yersinia pestis biovar Microtus str. 91001] gi|108808172|ref|YP_652088.1| NAD-dependent DNA ligase LigA [Yersinia pestis Antiqua] gi|108811556|ref|YP_647323.1| NAD-dependent DNA ligase LigA [Yersinia pestis Nepal516] gi|145599373|ref|YP_001163449.1| NAD-dependent DNA ligase LigA [Yersinia pestis Pestoides F] gi|149365146|ref|ZP_01887181.1| DNA ligase [Yersinia pestis CA88-4125] gi|162420672|ref|YP_001607138.1| NAD-dependent DNA ligase LigA [Yersinia pestis Angola] gi|165926903|ref|ZP_02222735.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. F1991016] gi|165940356|ref|ZP_02228875.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. IP275] gi|166011271|ref|ZP_02232169.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. E1979001] gi|166212520|ref|ZP_02238555.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. B42003004] gi|167398917|ref|ZP_02304441.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421338|ref|ZP_02313091.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424444|ref|ZP_02316197.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470665|ref|ZP_02335369.1| DNA ligase, NAD-dependent [Yersinia pestis FV-1] gi|218930038|ref|YP_002347913.1| NAD-dependent DNA ligase LigA [Yersinia pestis CO92] gi|229838581|ref|ZP_04458740.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895648|ref|ZP_04510819.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Pestoides A] gi|229899147|ref|ZP_04514290.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis str. India 195] gi|229901826|ref|ZP_04516947.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Nepal516] gi|270490015|ref|ZP_06207089.1| DNA ligase (NAD(+)) [Yersinia pestis KIM D27] gi|122980211|sp|Q1CJV7|DNLJ_YERPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123372308|sp|Q1C5X9|DNLJ_YERPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123776939|sp|Q7CJF3|DNLJ_YERPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166216255|sp|A4TMG4|DNLJ_YERPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781914|sp|A9QZH0|DNLJ_YERPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|21958274|gb|AAM85063.1|AE013752_4 DNA ligase [Yersinia pestis KIM 10] gi|45437255|gb|AAS62807.1| DNA ligase [Yersinia pestis biovar Microtus str. 91001] gi|108775204|gb|ABG17723.1| DNA ligase [Yersinia pestis Nepal516] gi|108780085|gb|ABG14143.1| DNA ligase [Yersinia pestis Antiqua] gi|115348649|emb|CAL21593.1| DNA ligase [Yersinia pestis CO92] gi|145211069|gb|ABP40476.1| DNA ligase [Yersinia pestis Pestoides F] gi|149291559|gb|EDM41633.1| DNA ligase [Yersinia pestis CA88-4125] gi|162353487|gb|ABX87435.1| DNA ligase, NAD-dependent [Yersinia pestis Angola] gi|165911711|gb|EDR30369.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. IP275] gi|165921254|gb|EDR38478.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. F1991016] gi|165989949|gb|EDR42250.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. E1979001] gi|166206451|gb|EDR50931.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. B42003004] gi|166960827|gb|EDR56848.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051421|gb|EDR62829.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056326|gb|EDR66095.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680722|gb|EEO76817.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Nepal516] gi|229687549|gb|EEO79622.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis str. India 195] gi|229694947|gb|EEO84994.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701454|gb|EEO89482.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Pestoides A] gi|270338519|gb|EFA49296.1| DNA ligase (NAD(+)) [Yersinia pestis KIM D27] Length = 670 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 244/712 (34%), Positives = 400/712 (56%), Gaps = 47/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD + ++ + P+L + + Sbjct: 1 MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTN---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R++ K + F E K Sbjct: 58 PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRL--KTAEPLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV+ V+ ++++Y +++ R+ L +DIDG+V KVD+ + Sbjct: 236 PRSHIQCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++ +R D + +F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C S + R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PSQCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+F L K+ + G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLFQLTA------GKLTGLDRMGPKSAQNLIAALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + N D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNLRAA----------DIETLKSVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F N +E L K VS + + S K +V TG+L + R +A++ Sbjct: 559 HVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEESDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +T LGA VS +S+KT ++I G+ GSKL KAQ+LG+K+++E + + LL + Sbjct: 619 RLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLLGE 670 >gi|312114833|ref|YP_004012429.1| DNA ligase, NAD-dependent [Rhodomicrobium vannielii ATCC 17100] gi|311219962|gb|ADP71330.1| DNA ligase, NAD-dependent [Rhodomicrobium vannielii ATCC 17100] Length = 777 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 299/739 (40%), Positives = 437/739 (59%), Gaps = 51/739 (6%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E LS E A+ E +L EI+ HD Y Q + P I D+EYD L+ R +A+ AFP L Sbjct: 57 EHLSAEDAKDEHDALAAEIARHDLLY-QDAAPEISDAEYDRLRLRLNALEAAFPSLI--- 112 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P P +G + KV H++ LSL +++ ED+ F R+ RF + D ++ T Sbjct: 113 TPESPSQTVGATPSEKFAKVRHTVRMLSLGNVFSDEDVADFAGRVRRFLKFAPDEALDVT 172 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVR 188 E KIDG +++RYE G+ AA RGDG GEDV+A +R I IP+V+ ++P + EVR Sbjct: 173 AEMKIDGLSVSLRYENGRLAVAATRGDGSEGEDVTANVRTIADIPQVIRANDVPAVFEVR 232 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVY+S DF ALN+ + G + +ANPRNAA+G LR+L+P R L FF G G+ Sbjct: 233 GEVYMSHADFQALNERQVGKGGRMFANPRNAAAGSLRQLDPAITAARPLRFFAWGWGEVR 292 Query: 248 EI------FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 A + +LQ + GFP+ V + +++ Y ++ R++L YDIDG Sbjct: 293 GWGEASALPADTNFGVLQAIHGWGFPLPP-VEICRSVEEMLAVYRAIEMKRASLGYDIDG 351 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYKV+ LQ++LG +R+PRW +HKF+ ++A+T L IDIQ+GRTG LTPVA+L PV Sbjct: 352 VVYKVNRLDLQERLGFISRTPRWATAHKFSAEKATTVLNGIDIQVGRTGALTPVAKLAPV 411 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 +GG ++ NATLHNED I+ +D+R+GD V+V+RAG+VIP+++ ++ +R Sbjct: 412 TVGGVVVQNATLHNEDEIRR-----------KDVRIGDTVIVQRAGDVIPQILGPVLEQR 460 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 DA F FP+ CP+C S VR+ +PKTGK+ A RCTGGL C+AQ +ERL+HFVSR AF Sbjct: 461 PADAVEFVFPTLCPVCGSHAVRETHPKTGKVDAVRRCTGGLICAAQAVERLRHFVSRHAF 520 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +IEGLG++ + FF I+ PADIFT+ R K+ G+G S NL+ + Sbjct: 521 DIEGLGEKNIQAFFDE----GRIKAPADIFTMAARDGVDLPKLSEKEGWGAQSAANLFAA 576 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI-- 599 I RR ISLERFIF+LGIRHVG A+ LAK + S + A L+ Sbjct: 577 IEARRTISLERFIFALGIRHVGETTAKLLAKTFGSLDALRAAMAEPDAAELRPGDELLLE 636 Query: 600 --------------------RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639 + +GD++AQ+IV+F+ P N AV+AL +E++ + Sbjct: 637 SASGEDKRSLHRAIILAKLNEIDGIGDVVAQSIVDFFDEPHNREAVDALRRELTIEAYKP 696 Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 ++ VSS + +VFTG L++ R +A+ + GA V+ +S+ T ++ G GSKL+ Sbjct: 697 DQ-VSSLLAGATVVFTGKLERFTRDEAKAQAERFGAKVAGSVSKATTYLVAGPGAGSKLK 755 Query: 700 KAQQLGVKIMNEEQFLFLL 718 KA+ LGVK+M E+++L ++ Sbjct: 756 KAEDLGVKVMTEDEWLEMI 774 >gi|333016518|gb|EGK35849.1| DNA ligase, NAD-dependent [Shigella flexneri K-304] Length = 671 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARCTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKLAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|322831833|ref|YP_004211860.1| DNA ligase, NAD-dependent [Rahnella sp. Y9602] gi|321167034|gb|ADW72733.1| DNA ligase, NAD-dependent [Rahnella sp. Y9602] Length = 673 Score = 590 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 252/715 (35%), Positives = 403/715 (56%), Gaps = 50/715 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + +++S L ++ +H+ Y+ P + D+EYD L R + A P+L + + Sbjct: 1 MATIEEQISQLRTQLRHHEYQYHVLDAPEVPDAEYDRLMRELRELETAHPELVTA---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R+ K ++ F E K Sbjct: 58 PTQRVGAAPLSAFEQVRHRVPMLSLDNVFDEESYLAFYKRVQDRL--KTAEALTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP L + PE +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGELVQAATRGDGTTGENITANVRTIRAIPLRLHGDNIPERLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F A+NDE G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEAMNDEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + LQ+ + G PV++ VR ++++Y ++++ R +L +DIDG+V K+D Sbjct: 236 PRSHFARLQQFKAWGLPVSDRVRLCTGSEEVLAFYRQVEADRPSLGFDIDGVVVKIDSLD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q+ LG AR+PRW + KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 IQETLGFVARAPRWATAFKFPAQEQITLVKDVEFQVGRTGAITPVARLEPVLVAGVMVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV ++++ER DA+ F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVLDERPEDAREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCT GL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCHSDVERVEGE------AVARCTAGLICGAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E ++ PAD+F L K+ + G S N+ ++ K + +L Sbjct: 459 IDQLVEKE----YVKTPADLFRLTA------GKLTGLDRMGPKSAQNVVRALEKAKETTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA +Y S + D SL V VGD++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHYGSVEALKAA----------DIESLKGVQDVGDVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLK-EVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHK 665 +V F N ++ LL E++ + + + S K +V TG+L + R Sbjct: 559 HVVNFLSEEHNQQVIDELLSPEINIHWPEVQVIVPEEIDSPFAGKTVVLTGSLSILSRDD 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL + Sbjct: 619 AKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMIRLLGE 673 >gi|163794455|ref|ZP_02188426.1| NAD-dependent DNA ligase [alpha proteobacterium BAL199] gi|159180179|gb|EDP64702.1| NAD-dependent DNA ligase [alpha proteobacterium BAL199] Length = 696 Score = 590 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 282/714 (39%), Positives = 414/714 (57%), Gaps = 29/714 (4%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E LS +A+ EL L IS D Y+ P++ D+EYDAL+RR AI FPDL Sbjct: 11 PVEELSDAEAKAELRRLSDAISEADRQYHVEDAPVLTDAEYDALRRRNQAIEERFPDLKL 70 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + + P ++ + KV H+ P LSL +N ED+ +F R+ RF +++ + Sbjct: 71 A---DSPSERVAPGPSEGFSKVRHARPMLSLANAFNDEDVHEFARRVRRFLSLGEEDELA 127 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 EPKIDG +RY G+ A RGDG GE+++ + + +P L +P I+EV Sbjct: 128 LVAEPKIDGLSAALRYVDGRLEVGATRGDGTEGENITRNLETLDDVPTTLPAGVPGILEV 187 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY++K+DF+ALND G K +ANPRNAA+G LR+L+PT R L FF + G+ Sbjct: 188 RGEVYMTKDDFVALNDRQAKAGGKIFANPRNAAAGSLRQLDPTITAARPLRFFAYSWGEI 247 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE A +E L+K+ GF N ++ + ++ Y ++ R+TLPYDIDG+VYKV Sbjct: 248 SENIADTHWEFLKKLEAWGFTTNPLSQRCESVESALAVYADIGERRTTLPYDIDGVVYKV 307 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D Q++LG +R+PRW I+HKF +QA T L I+IQ+GRTG LTPVARLEPV + G Sbjct: 308 DRLDWQQRLGMVSRAPRWAIAHKFKAEQAETVLKAIEIQVGRTGALTPVARLEPVKVAGV 367 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++NATLHNE I+ +D+RVGD V+++RAG+VIP+VV +I+ +R D+ Sbjct: 368 TVSNATLHNEGEIRR-----------KDVRVGDTVVIQRAGDVIPQVVRVILEKRPADSV 416 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + FP CP C S + A RCTGGL C AQ +ERLKHFVSRDAF+IEGL Sbjct: 417 EYVFPETCPECGSDAEQPEGE------AIRRCTGGLICPAQAVERLKHFVSRDAFDIEGL 470 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q+D F+ + I+ P DIF L++ + + G +S NL +I RR Sbjct: 471 GSKQIDGFYSN----GLIKRPGDIFRLKQHRD----VLIGEKGTKTISTDNLLAAIEDRR 522 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +I +RFI+SLGIR VG AR LA Y + + + ++ L+ + +G Sbjct: 523 SIGFDRFIYSLGIRQVGQATARLLAINYGTLEALRTAMAAAHDPESEAHADLLNIDQIGS 582 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 +A+ + +F+ N ++ L E++ + S I K +VFTGTL +I R++A Sbjct: 583 SVAKDLADFFAEDHNAEVLDDLAAELTIAPFAAPAASDSPIAGKTVVFTGTLTRIGRNEA 642 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA V+ +S+KTD +I+G + GSK KA+ LGV ++E+++ L+ + Sbjct: 643 KAKAESLGAKVAGSVSKKTDYVIIGADAGSKAAKAEALGVPTLSEDEWFTLIGE 696 >gi|212638096|ref|YP_002314616.1| NAD-dependent DNA ligase LigA [Anoxybacillus flavithermus WK1] gi|254781544|sp|B7GFV1|DNLJ_ANOFW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|212559576|gb|ACJ32631.1| NAD-dependent DNA ligase [Anoxybacillus flavithermus WK1] Length = 672 Score = 590 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 254/711 (35%), Positives = 394/711 (55%), Gaps = 52/711 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 K+++ L ++I H+ YY +P I D+EYD L R+ + +P P+ P Sbjct: 8 DVEKQIAELREQIEKHNYAYYVLDQPSISDAEYDELMRKLMELEEQYPQYK---TPDSPS 64 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + KVTH +P LSL +N DLR F R+ ++ + + E KID Sbjct: 65 QRVGGAPLEAFRKVTHRVPMLSLSNAFNEGDLRDFDRRVR-----QEVGDVRYVCELKID 119 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +++RYE G FV A RGDG +GED++ ++ I ++P L + IEVRGE Y+ + Sbjct: 120 GLAVSLRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLRQQV--TIEVRGEAYMPR 177 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254 F LN++ G + +ANPRNAA+G LR+L+P +R L+ F + + E+ Sbjct: 178 KSFEKLNEKRKMNGEELFANPRNAAAGSLRQLDPKVAASRQLDIFAYHVVNAEELGILSH 237 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 L + LGF N + T ++SY + R++LPYDIDG+V KVD F+ QKQ Sbjct: 238 SAALNYLDELGFKTNPARQVCETIDDVLSYIEQWHERRASLPYDIDGIVIKVDAFAQQKQ 297 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW I++KF ++ T+L+DI++ +GRTG++TP A L+PV + G ++ A+LH Sbjct: 298 LGATAKSPRWAIAYKFPAEEVVTQLVDIELSVGRTGVVTPTAILQPVRVAGTIVQRASLH 357 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NEDYI+ +DIR+GD V++K+AG++IP+VV + R +PF P+ C Sbjct: 358 NEDYIR-----------EKDIRLGDYVVIKKAGDIIPEVVCSLPERRTGKEEPFDMPTHC 406 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S +VR + A RC C AQ E L HFVSR A NI+GLG++ + Sbjct: 407 PACASELVRLDDE------VALRCVNPQ-CPAQIREGLIHFVSRQAMNIDGLGEKVIAQL 459 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ +R AD++TL + + + + G+ S TNL +I + SLER + Sbjct: 460 FEHR----LVRSVADLYTLTKDELVA------LERMGEKSATNLLQAIEASKQNSLERLL 509 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F LGIRHVGA+ A++LA+++ + + Q L+ + +G+ +A +IV Sbjct: 510 FGLGIRHVGAKAAKTLAEHFETMERLQQATK----------EELMAIHEIGEKMADSIVT 559 Query: 615 FYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 ++ +E L + ++SS K V TGTLQ + R +A+E + Sbjct: 560 YFSKEEVKQLLERLRAYGVNMTYKGAKQTIDISSTFAGKTFVLTGTLQSMSRSEAKEKIE 619 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LG V+ +S+KTD+++VG++ GSKLEKA+QLG+ I +E +FL +QQ Sbjct: 620 TLGGKVTGSVSKKTDVVVVGEDAGSKLEKAKQLGITIWDEARFLQEIQQSK 670 >gi|238895883|ref|YP_002920619.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae NTUH-K2044] gi|238548201|dbj|BAH64552.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 671 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 247/713 (34%), Positives = 395/713 (55%), Gaps = 48/713 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P + D+EYD L R+ + P+L P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + D + + E K Sbjct: 58 PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDH--LTYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V +T +++YY +++ R L +DIDG+V KVD + Sbjct: 236 PASHSARLLQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +++GD+V+++RAG+VIP+VV+++++ER DA+ F Sbjct: 356 ATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCQSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFRLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA ++ + + Q L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLEALEQAT----------IEELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F+ N + LL E + + S K +V TG+L ++ R A+ Sbjct: 559 HTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 E + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL + Sbjct: 619 ERLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671 >gi|262042032|ref|ZP_06015211.1| DNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040623|gb|EEW41715.1| DNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 671 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 246/713 (34%), Positives = 394/713 (55%), Gaps = 48/713 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P + D+EYD L R+ + P+L P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + D + + E K Sbjct: 58 PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDH--LTYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V +T +++YY +++ R L +DIDG+V KVD + Sbjct: 236 PASHSARLLQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +++GD+V+++RAG+VIP+VV+++++ER DA+ F Sbjct: 356 ATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCQSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA ++ + + Q L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLEALEQA----------SIEELQKVPDVGIVVAA 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F+ N + LL E + + S K +V TG+L ++ R A+ Sbjct: 559 HTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL + Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671 >gi|51597030|ref|YP_071221.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis IP 32953] gi|186896113|ref|YP_001873225.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis PB1/+] gi|81638946|sp|Q668M6|DNLJ_YERPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781913|sp|B2K917|DNLJ_YERPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|51590312|emb|CAH21949.1| DNA ligase [Yersinia pseudotuberculosis IP 32953] gi|186699139|gb|ACC89768.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis PB1/+] Length = 670 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 244/712 (34%), Positives = 400/712 (56%), Gaps = 47/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD + ++ + P+L + + Sbjct: 1 MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTN---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R++ K + F E K Sbjct: 58 PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRL--KTAEPLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV+ V+ ++++Y +++ R+ L +DIDG+V KVD+ Sbjct: 236 PRSHIQCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLV 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++ +R D + +F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C S + R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PSQCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+F L K+ + G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLFQLTA------GKLTGLDRMGPKSAQNLIAALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + N D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNLRAA----------DIETLKSVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F N +E L K VS + + + S K +V TG+L + R +A++ Sbjct: 559 HVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEEIDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +T LGA VS +S+KT ++I G+ GSKL KAQ+LG+K+++E + + LL + Sbjct: 619 RLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLLGE 670 >gi|220935192|ref|YP_002514091.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. HL-EbGR7] gi|254781444|sp|B8GTL0|DNLJ_THISH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219996502|gb|ACL73104.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. HL-EbGR7] Length = 675 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 257/717 (35%), Positives = 385/717 (53%), Gaps = 50/717 (6%) Query: 12 LSI--EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 +S E+ RK ++SL E+ YH+ YY P I D+ YDAL R + +P+L Sbjct: 1 MSEIPEKVRKRVASLRDELDYHNHRYYVLDDPEIPDAAYDALMRELQDLEAKYPELV--- 57 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++GG + + H +P LSL+ + D+ F RI ++ + I F Sbjct: 58 TPDSPTQRVGGAPLKAFEEARHLLPMLSLDNAFEEADVLAFEKRIRDRLGEE--SEIEFA 115 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188 +EPK+DG I++ YE G V A RGDG +GEDV+A +R I IP L P+++EVR Sbjct: 116 VEPKLDGLAISLLYEDGHLVRGATRGDGATGEDVTANVRTIRAIPLRLQGRGWPKLLEVR 175 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247 GEVY+ + F A N E + G K + NPRNAA+G LR+L+ R L FF +G G Sbjct: 176 GEVYMDRAGFEAFNREAASRGEKVFVNPRNAAAGSLRQLDSRITAKRPLTFFAYGAGHVE 235 Query: 248 E-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 +L + G V G + YY + R LPYDIDG+VYKV Sbjct: 236 GGELPDTHAAVLDALAEWGQRVCPERDVVTGAAGCLEYYRRIGERRDGLPYDIDGVVYKV 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + F LQ++LG +R+PRW I+HK+ ++ T L D++ Q+GRTG LTPVARLEPV +GG Sbjct: 296 NRFELQQRLGFVSRAPRWAIAHKYPAQEQMTLLRDVEFQVGRTGALTPVARLEPVFVGGV 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++NATLHN D ++ +D+R+GD V+V+RAG+VIP+V ++++ R +A+ Sbjct: 356 TVSNATLHNMDEVER-----------KDVRIGDTVIVRRAGDVIPEVAAVVLSRRPHNAR 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ CP+C S +VR A RC+GGL C+AQ+ E +KHF SR A +IEGL Sbjct: 405 HVVMPTHCPVCGSEIVRSEGE------AVARCSGGLYCAAQRREAIKHFASRRAMDIEGL 458 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ A + ++ L Q + G+ S NL D++ K + Sbjct: 459 GDKLVEQLVD----AGLVDHVDGLYRLTAEQLAG------LERMGEKSAHNLVDALEKSK 508 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + L RFIF+LGIR VG AR+LA ++ D +L++VP VG Sbjct: 509 HTQLARFIFALGIREVGEATARALAIHFGGLDALMAA----------DEEALMQVPDVGP 558 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE---KNVSSEIENKKLVFTGTLQKIQR 663 ++A + F+Q P N ++AL + + + V TG L+ + R Sbjct: 559 VVAHHVATFFQQPHNREVIDALREAGVHWEESEPAALQAEDLPLSGNTYVLTGALESMTR 618 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +A + + LGA VS +S+KT +I G+ GSKL KA++LGV +++E +FL L+ + Sbjct: 619 EEAGDRLMALGAKVSGSVSKKTTAVIAGEAAGSKLAKAEKLGVPVLSEAEFLELIGE 675 >gi|296445905|ref|ZP_06887856.1| DNA ligase, NAD-dependent [Methylosinus trichosporium OB3b] gi|296256573|gb|EFH03649.1| DNA ligase, NAD-dependent [Methylosinus trichosporium OB3b] Length = 713 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 287/714 (40%), Positives = 445/714 (62%), Gaps = 23/714 (3%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 +R+ P+ LS +A+ E S L +EI+ +D YYQ P I D+EYDAL++R +A+ AF Sbjct: 15 ERERPPVAELSPRRAKLEHSRLAEEIAEYDRRYYQEDDPAISDAEYDALRQRYEALEKAF 74 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P+L +G K+ H + LSL ++ E++ +F+ R+ RF D Sbjct: 75 PELGGDA---SLTKTVGAAPAEKFAKIRHVVRMLSLGNVFADEEVHEFVARVRRFLNFSD 131 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-I 181 + FT EPKIDG ++RYEKG+ V AA RGDG GED++A IR + IP+ L + I Sbjct: 132 AAPLLFTAEPKIDGLSCSLRYEKGELVSAATRGDGEEGEDITANIRTLEEIPQRLRGDVI 191 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240 PE++E+RGEVY+ + DF ALN G+ +ANPRN+A+G LR+L+P +R L FF Sbjct: 192 PEVLEIRGEVYMRREDFFALNQRQAEAGKPLFANPRNSAAGSLRQLDPNVTASRPLRFFA 251 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 +G G+ S + A Q M+Q G N + + ++++Y ++++R+TL YDID Sbjct: 252 YGWGEVSVMPADTQLGMVQAFASFGLATNPLTQLCGSAEELLAHYRNIEALRATLGYDID 311 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+VYKVD+ LQ +LG +R+PRW ++HKF +QA T + DI+I +GRTG LTP+ARLEP Sbjct: 312 GVVYKVDDIGLQIRLGFVSRAPRWAVAHKFPAEQAKTIVRDIEINVGRTGALTPIARLEP 371 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V +GG +++NATLHNED I +DIR+GD V+V+RAG+VIP++V++++++ Sbjct: 372 VTVGGVVVSNATLHNEDEIAR-----------KDIRIGDTVVVQRAGDVIPQIVEVVLDK 420 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R A P+ FP CP C S +R+++ K + RCTG L C AQ +ERLKHF SR+A Sbjct: 421 RPEGATPYVFPHECPACGSAALREIDEKGVE-DVVRRCTGSLVCPAQAIERLKHFASRNA 479 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +IEGLG +Q+++FF +R ++IFTL R + S TK+EN G+G+ SV NL+ Sbjct: 480 MDIEGLGDKQIEYFFTD----GLVRTASEIFTLAERDRASLTKLENKEGYGETSVRNLFA 535 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 +I+ RR + + RF+++LGIRHVG AR LA+++ + + A ++ + Sbjct: 536 AIDARRTVPINRFLYALGIRHVGETNARRLARHFPDFASLRDTAREA-APGSEARERIES 594 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 + +G ++A+A+ +F+ P N ++ALL VS +N S + K +VFTG L++ Sbjct: 595 IEGIGGVVAEALHDFFAEPHNEREIDALLAHVSLEPMPTIENA-SPVAGKTVVFTGALER 653 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 + R +A+ + GA +S +S+KTD+++ G GSKL KA++LGV++++EE++ Sbjct: 654 LTREEAKAQAERFGAKISGSVSKKTDLVVAGPGAGSKLAKAKELGVEVISEEEW 707 >gi|152971289|ref|YP_001336398.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|166215815|sp|A6TC47|DNLJ_KLEP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|150956138|gb|ABR78168.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 671 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 246/713 (34%), Positives = 394/713 (55%), Gaps = 48/713 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P + D+EYD L R+ + P+L P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + D + + E K Sbjct: 58 PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDH--LTYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V +T +++YY +++ R L +DIDG+V KVD + Sbjct: 236 PASHSARLLQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +++GD+V+++RAG+VIP+VV+++++ER DA+ F Sbjct: 356 ATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCQSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA ++ + + Q L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLEALEQA----------SIEELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F+ N + LL E + + S K +V TG+L ++ R A+ Sbjct: 559 HTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL + Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671 >gi|113868039|ref|YP_726528.1| NAD-dependent DNA ligase [Ralstonia eutropha H16] gi|123133949|sp|Q0KA11|DNLJ_RALEH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|113526815|emb|CAJ93160.1| NAD-dependent DNA ligase [Ralstonia eutropha H16] Length = 709 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 256/721 (35%), Positives = 384/721 (53%), Gaps = 54/721 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P L E A K ++ L E+ H+ YY P I D+EYDAL A+ P+L Sbjct: 15 PAGPLPPEAAAKRVAWLRDELDRHNYQYYVLDAPTIPDAEYDALFSELQALELEHPEL-- 72 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 + P+ P ++GGE + V H +P LSL + +D+ F R + + Sbjct: 73 -QTPDSPTQRVGGEPLSAFDSVRHRVPMLSLNNGFADDDVLNFDRRCAQGLGRTAPAAGE 131 Query: 124 -------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176 +++ + E K DG +++RYE G+ V AA RGDG +GEDV+ +R I IP Sbjct: 132 QDLFSAADAVEYACELKFDGLAMSLRYEDGRLVQAATRGDGETGEDVTVNVRTIKAIPLK 191 Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRY 235 L P ++EVRGEV++ + DF LN+ G K + NPRNAA+G LR+L+P R Sbjct: 192 LRGQAPAVLEVRGEVFMYRGDFDKLNERQAEAGEKTFVNPRNAAAGSLRQLDPRITAKRP 251 Query: 236 LNFFVHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 L+FF +GLG+ ML LG PV G++ +Y ++ R Sbjct: 252 LSFFAYGLGELQGVDRPPTHSAMLDGFAALGLPVCKDRAVVKGAQGLLDFYRDIGQRRDA 311 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 LPYDIDG+VYKV+ + Q++LG +R+PR+ ++HKF ++ +T + DI++Q+GRTG +TP Sbjct: 312 LPYDIDGVVYKVNALAEQERLGFVSRAPRFALAHKFPAQEMTTIVEDIEVQVGRTGAITP 371 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VARL+PV +GG +TNATLHNED I+ +D+ +GD V+V+RAG+VIP+VV Sbjct: 372 VARLKPVFVGGVTVTNATLHNEDEIRR-----------KDVHIGDTVIVRRAGDVIPEVV 420 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 ++ R DA+ F P+ CP+C S + + + A RCTGGL C+AQ+ + L H Sbjct: 421 AVVTERRPDDARAFVMPTACPVCGSHIEKLEDE------AIARCTGGLICAAQRKQALLH 474 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 F R A +IEGLG + ++ +R PAD+F L K+ + D S Sbjct: 475 FAQRRAMDIEGLGDKLVEQLVDQ----GIVRTPADLFKL------GVAKLAALERMADKS 524 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 NL +I+ R ++ RFIF+LGIRHVG A+ LA+++ D Sbjct: 525 AANLVAAIDASRETTMNRFIFALGIRHVGEATAKDLARHFGKLDALMAA----------D 574 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLV 653 +L+ V VG ++AQ+I F+ P N+ +E L + + + K V Sbjct: 575 EAALLEVNDVGPVVAQSIAHFFAEPHNVEVIEQLRAAGVHWTESEPVAKAPAPLSGKTFV 634 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 TGTL + R A+E + GA V+ +S+KTD ++ G GSKL+KA+ LGV +++E Sbjct: 635 LTGTLPTMSREDAKELLEAAGAKVAGSVSKKTDYVVAGAEAGSKLDKAEALGVPVLDEAG 694 Query: 714 F 714 Sbjct: 695 M 695 >gi|253988889|ref|YP_003040245.1| NAD-dependent DNA ligase LigA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780339|emb|CAQ83500.1| DNA ligase [Photorhabdus asymbiotica] Length = 672 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 241/714 (33%), Positives = 391/714 (54%), Gaps = 49/714 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ +++ +L + + +H+ Y+ P I D+EYD L + + P+L S + Sbjct: 1 MKSTAQQIENLRKTLRHHEYLYHVMDAPEISDAEYDRLMQELKTLEGQHPELITS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H IP LSL+ +++ E F R+ KD + E K Sbjct: 58 PTQRVGAAPLAAFEQVRHEIPMLSLDNVFDEESYLAFDKRVRDRL--KDTQDLVVCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE++++ +R I +P L P IEVRGEV+ Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITSNVRTINAVPLRLIGENIPARIEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + +N F LN+E G K +ANPRNAA+G LR+L+P R L F +G+G Sbjct: 176 MPQNGFEKLNEEARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLAFLCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 YE L + + G PV++ VR + ++ +Y +++ RSTL +DIDG+V KV+ Sbjct: 236 PASHYERLMQFKKWGLPVSDKVRVCTDSNQVIDFYRNIENQRSTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG AR+PRW + KF ++ T + DI+ Q+GRTG +TPVARLEPV + G ++N Sbjct: 296 LQETLGFVARAPRWATAFKFPAQEQMTIVRDIEFQVGRTGAITPVARLEPVQVSGVTVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+++RAG+VIP+VV ++ + R D+ F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIIRRAGDVIPQVVGVVEDRRPQDSDEVIF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P +CP+C + + + A RCTGGL C AQ+ E L+HFVSR A +++G+G++ Sbjct: 405 PEYCPVCGADIEKIEGE------AVARCTGGLVCGAQRKEALRHFVSRRAMDVDGMGEKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D E + PAD+F L K+ + G S N+ D++ K + + Sbjct: 459 IDQLVDKE----YVETPADLFRLTA------GKLTGLDRMGPKSAQNVVDALEKAKKTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA Y+ D +L V VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAYFGDLNKLRAA----------DEEALKEVQDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 +V F+ P N ++ L+ + + + + S K +V TG+L ++ R +A Sbjct: 559 HVVHFFNEPHNQKVIDDLIDNIGINWEPIAVTKAEKIDSPFAGKTIVLTGSLHQLSRDEA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ + LGA V+ +S+KTD++I G+ GSKL KA +L + +++EE+ + LL + Sbjct: 619 KDKLIALGAKVTGSVSKKTDLVIAGEAAGSKLAKANELNIAVIDEEEMIRLLGE 672 >gi|153948204|ref|YP_001400300.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis IP 31758] gi|170023674|ref|YP_001720179.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis YPIII] gi|190359300|sp|A7FGC2|DNLJ_YERP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781915|sp|B1JFZ0|DNLJ_YERPY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|152959699|gb|ABS47160.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis IP 31758] gi|169750208|gb|ACA67726.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis YPIII] Length = 670 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 244/712 (34%), Positives = 400/712 (56%), Gaps = 47/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD + ++ + P+L + + Sbjct: 1 MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTN---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R++ K + F E K Sbjct: 58 PTQRVGAAPLDAFEQVEHEVPMLSLDNVFDEESYLAFDKRVHDRL--KTAEPLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV+ V+ ++++Y +++ R+ L +DIDG+V KVD+ Sbjct: 236 PRSHIQCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLV 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++ +R D + +F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C S + R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PSQCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+F L K+ + G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLFQLTA------GKLTGLDRMGPKSAQNLIAALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + N D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNLRAA----------DIETLKSVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F N +E L K VS + + + S K +V TG+L + R +A++ Sbjct: 559 HVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEEIDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +T LGA VS +S+KT ++I G+ GSKL KAQ+LG+K+++E + + LL + Sbjct: 619 RLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLLGE 670 >gi|320014458|gb|ADV98029.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 670 Score = 589 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 244/712 (34%), Positives = 400/712 (56%), Gaps = 47/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD + ++ + P+L + + Sbjct: 1 MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTN---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R++ K + F E K Sbjct: 58 PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRL--KTAEPLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV+ V+ ++++Y +++ R+ L +DIDG+V KVD+ + Sbjct: 236 PRSHIQCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++ +R D + +F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C S + R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PSQCPVCSSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+F L K+ + G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLFQLTA------GKLTGLDRMGPKSAQNLIAALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + N D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNLRAA----------DIETLKSVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F N +E L K VS + + S K +V TG+L + R +A++ Sbjct: 559 HVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEESDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +T LGA VS +S+KT ++I G+ GSKL KAQ+LG+K+++E + + LL + Sbjct: 619 RLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLLGE 670 >gi|262276434|ref|ZP_06054243.1| DNA ligase [Grimontia hollisae CIP 101886] gi|262220242|gb|EEY71558.1| DNA ligase [Grimontia hollisae CIP 101886] Length = 670 Score = 588 bits (1516), Expect = e-165, Method: Composition-based stats. Identities = 261/713 (36%), Positives = 412/713 (57%), Gaps = 47/713 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + +++L SL+ +++YH YY KP + D+EYD + + AI P+L + Sbjct: 1 MTTD-IQQKLQSLKTQLNYHGHLYYVEDKPELPDAEYDRMMQELLAIEAKHPELVTA--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + +V H IP LSL+ ++ +L F R+ + F+ E Sbjct: 57 DSPSQRVGGAPLGAFEQVRHEIPMLSLDNAFDDGELEAFEKRLRDRLNTTER--FVFSCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 PK+DG +++ YE G V AA RGDG GE+++ +R I +P +L P +EVRGE Sbjct: 115 PKLDGLAVSLMYENGVLVQAATRGDGTVGENITHNVRTIRNVPLLLQGEGWPVRLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V++ K+ F ALN++ I G K +ANPRNAA+G LR+L+P TR L F+ + +G SE Sbjct: 175 VFMPKDGFEALNEKNIKKGEKTFANPRNAAAGSLRQLDPKITATRPLRFYAYSVGVMSEA 234 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 F L++++ G P++ V++ + + +YY ++ + R+ LPY+IDG+V KVD Sbjct: 235 FGDSHVGRLEQLKQWGIPLSPEVKKVDGLENVKAYYQDIAARRNDLPYEIDGVVIKVDNI 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++ Sbjct: 295 DTQERLGFVARAPRWAIAYKFPAQEEITVLQDVEFQVGRTGAITPVAKLEPVFVGGVTVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I L +++GD V+++RAG+VIP++V ++ + R DA+ Sbjct: 355 NATLHNADEIARL-----------GVKIGDTVIIRRAGDVIPQIVSVVESRRPDDAKEVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP CP+CQS+V R A RCTGGL C AQ+ E +KHF SR A +I+GLG + Sbjct: 404 FPHECPVCQSQVERVEGE------AVARCTGGLICRAQRKEAIKHFSSRKALDIDGLGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ + E I+ PAD+F L Q + G S NL D+++K + + Sbjct: 458 IVEQLIEKE----LIKTPADLFKLTAGQV------TMLDRMGPKSAQNLVDALSKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RFI+SLGIR VG A +LA ++ +++ + LI V VG I+A Sbjct: 508 LPRFIYSLGIREVGEATAANLANHFFTFEAIREATE----------EQLIEVQDVGVIVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + +V F+ N ++ALL P+I + ++N + K +V TGTL ++ R+ A+ Sbjct: 558 KHVVNFFNEEHNKTVIDALLACGITWPAIEQPDENKPQPLAGKTVVLTGTLSQMSRNDAK 617 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA V+ +S KTD++I G+ GSKL KAQQLG++I++E+ + LL + Sbjct: 618 AALQALGAKVTGSVSAKTDLLIAGEAAGSKLTKAQQLGIEIVDEDGMMRLLSR 670 >gi|292491548|ref|YP_003526987.1| DNA ligase, NAD-dependent [Nitrosococcus halophilus Nc4] gi|291580143|gb|ADE14600.1| DNA ligase, NAD-dependent [Nitrosococcus halophilus Nc4] Length = 675 Score = 588 bits (1516), Expect = e-165, Method: Composition-based stats. Identities = 257/714 (35%), Positives = 394/714 (55%), Gaps = 48/714 (6%) Query: 12 LSI-EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ++ QAR+ + +L + I+ ++ YY P++ DSEYD L R + +P+L Sbjct: 1 MTATAQARERVETLRKLINDYNYNYYVLDSPVVPDSEYDRLMRELQNLEAQYPELVV--- 57 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P+ P ++G E +L +V H IP LSL ++ E+L F R+ + + + Sbjct: 58 PDSPTQRVGAEPLKALGEVKHEIPMLSLNNAFSEEELADFHRRVKERLGIE---QVEYAA 114 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189 EPK+DG +++ Y++G V A RGDG +GEDV+ +R IPT+ L + IP ++EVRG Sbjct: 115 EPKLDGLAVSLLYQEGILVQGATRGDGVTGEDVTHNVRTIPTVSLHLRGDKIPSLLEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSE 248 EVY+ K F LN E +A G K + NPRNAA+G LR+L+P F +G+GK + Sbjct: 175 EVYMPKEGFERLNREHLAKGEKTFVNPRNAAAGSLRQLDPRIAASRPLAIFCYGVGKVEQ 234 Query: 249 IF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + E+L +++ G V G YY + R LPY+IDG+V+KVD Sbjct: 235 GTLPQRHSEVLARLKQWGLRTPPHVEVVAGLAGCQEYYQRLLERRDGLPYEIDGVVFKVD 294 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 F ++ LG AR+PRW I++KF ++ T++LDI++Q+GRTG LTPVARL+PV +GG Sbjct: 295 RFDQRQALGFVARAPRWAIAYKFPAQEELTQILDIEVQVGRTGALTPVARLQPVFVGGVT 354 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHNED I+ +D+R+GD V V+RAG+VIP+VV +I++ R PDA+ Sbjct: 355 VSNATLHNEDEIRR-----------KDVRIGDTVYVRRAGDVIPEVVKVILDHRPPDARF 403 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P+ CPIC S V++D A RC+GGL C AQ+ E +KHF SR A +I GLG Sbjct: 404 FQMPTQCPICGSEVIKDEG------GAIARCSGGLYCPAQRKEAIKHFASRRAMDINGLG 457 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + +D + E + AD++ L Q + G S NL +I ++ Sbjct: 458 DKLVDQLIERE----LVEDVADLYHLTAEQLAG------LERMGQKSAANLMHAIEASKH 507 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L RF+++LGIR VG A++LA+ + S + L V +G + Sbjct: 508 TTLPRFLYALGIREVGEATAQALAEEFNSLEALEGASE----------ERLQEVTDIGPV 557 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 +A I F++ P N ++ L + +K + + K V TGTL+ + R +A Sbjct: 558 VATHIAAFFRQPHNRQVIQRLREAGVCWPEKEGKKPIPQPLSGKTFVLTGTLESMTREQA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +E + LG V++ +S TD ++VG NPGSKL KA+ L + +++E F LL + Sbjct: 618 KERLQALGGKVTSSVSSNTDYLVVGTNPGSKLTKAKDLHITLLDEGNFRNLLDE 671 >gi|330013648|ref|ZP_08307732.1| DNA ligase [Klebsiella sp. MS 92-3] gi|328533421|gb|EGF60158.1| DNA ligase [Klebsiella sp. MS 92-3] Length = 671 Score = 588 bits (1516), Expect = e-165, Method: Composition-based stats. Identities = 245/713 (34%), Positives = 393/713 (55%), Gaps = 48/713 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P + D+EYD L R+ + P+L P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + D + + E K Sbjct: 58 PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDH--LTYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V +T +++YY +++ R L +DIDG+V KVD Sbjct: 236 PASHSARLLQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +++GD+V+++RAG+VIP+VV+++++ER DA+ F Sbjct: 356 ATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCQSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L ++ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFRLTA------GELTGLDRMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA ++ + + Q L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLEALEQA----------SIEELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F+ N + LL E + + S K +V TG+L ++ R A+ Sbjct: 559 HTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL + Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671 >gi|121533514|ref|ZP_01665342.1| DNA ligase, NAD-dependent [Thermosinus carboxydivorans Nor1] gi|121308073|gb|EAX48987.1| DNA ligase, NAD-dependent [Thermosinus carboxydivorans Nor1] Length = 673 Score = 588 bits (1516), Expect = e-165, Method: Composition-based stats. Identities = 256/709 (36%), Positives = 381/709 (53%), Gaps = 46/709 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 ++EQA +E L ++I YH+ YY P I D+E+DAL RR AI A+P L P+ Sbjct: 8 TLEQAAREAEQLRRQIHYHNHRYYVLDAPEISDAEFDALMRRLIAIEEAYPSLI---TPD 64 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GG + H P LSL ++ EDLR F R+ + + +E Sbjct: 65 SPTQRVGGAPAEGFDRTLHLTPMLSLANAFSAEDLRAFDNRVRSGLGV---DKAEYVVEL 121 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEV 191 KIDG + + YE G+ V A RGDG GEDV+A +R I ++P V + P ++EVRGEV Sbjct: 122 KIDGLAVNLVYEAGRLVRGATRGDGQYGEDVTANVRTIRSVPLVLPVNDPPALLEVRGEV 181 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+ + +F LN+E A G +ANPRNAA+G LR+L+P R L+ FV+ G+ + Sbjct: 182 YMPRREFDRLNEERQAAGEALFANPRNAAAGSLRQLDPRVTAQRALDIFVYATGRREGLN 241 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L+ + LGF VN R + ++ Y R LPYDIDGLV K++ + Sbjct: 242 METHAQTLETLAALGFKVNPHYRVFGSIEEVIDYCYSWNERRVDLPYDIDGLVIKLNSLA 301 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q +LG A+ PRW I+ KF +QA+T + DI +++GRTG+LTP A+L PV + G+ ++ Sbjct: 302 GQARLGATAKDPRWAIAFKFPAEQATTIVEDIFVRVGRTGVLTPTAQLRPVRLAGSTVSR 361 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNEDYI+ +DIR+GD V++ +AGEVIP+VV ++ + R+ +PF Sbjct: 362 ATLHNEDYIR-----------DKDIRIGDTVIIHKAGEVIPEVVAVVASRRNGSERPFVM 410 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C S VVR+ AAH+C AC A E L HFVSRDA NIEGLG Sbjct: 411 PDRCPECGSPVVREPGE------AAHKCVNS-ACPAMLREGLIHFVSRDAMNIEGLGPAV 463 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + A +R AD++ L+ T + G S NL +I + L Sbjct: 464 IGSLLD----AGLVRDAADLYALRFDDLTK------LDRMGPKSAQNLLQAIEASKEAGL 513 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R +F+LGIR VGA+ A +LA+++ S + L+ + +G IA+ Sbjct: 514 ARLLFALGIRFVGAKAAGTLARHFGSIHALERAT----------VEELMALEEIGPKIAE 563 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ ++ +P+NI V L + V TGTL + R +A E + Sbjct: 564 SVANYFADPQNIALVRKLEAAGVKVTEERPAAKRQTLAGITFVLTGTLATMTRAEATELI 623 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G VS+ +S+KT+ ++ G+ GSKL+KA++LG+ ++ E +F LL+ Sbjct: 624 ESRGGKVSSSVSKKTNYVVAGEEAGSKLDKARELGIPVLTEGEFKKLLE 672 >gi|284006788|emb|CBA72055.1| DNA ligase [Arsenophonus nasoniae] Length = 670 Score = 588 bits (1516), Expect = e-165, Method: Composition-based stats. Identities = 249/712 (34%), Positives = 402/712 (56%), Gaps = 46/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ + L+ L+Q++ +H+ Y+ P I D+EYD L + + P+ + + Sbjct: 1 MKEQQNYLARLKQQLRHHEYLYHVLDTPEIPDAEYDRLMQELKKLEAEHPEWITA---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H IP LSL+ +++ E F R++ K+++ + F E K Sbjct: 58 PTQRVGAAPLTAFEQVRHEIPMLSLDNVFDEESYLAFDKRVHDRL--KNNSQLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE+G+ V AA RGDG +GE+++A IR I IP L+ + PE IE+RGEV+ Sbjct: 116 LDGLAVSLLYEQGELVQAATRGDGTTGENITANIRTIRAIPLRLTGDNIPERIEIRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF- 250 ++ F LN+E K +ANPRNAA+G LR+L+P R L FF +G G + Sbjct: 176 MTHRGFEKLNEEARRNDGKIFANPRNAAAGSLRQLDPRITAKRPLAFFCYGFGLLAGGQL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y+ L + + G PV++ + +++YY++++ R L +DIDG+V KVD Sbjct: 236 PASHYQCLMQFKKWGLPVSDKIALCQNSQQVLAYYHQIEHARLGLGFDIDGVVIKVDPLQ 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG AR+PRW + KF ++ T L D++ Q+GRTG +TPVARL PV + G +++N Sbjct: 296 LQEELGFVARAPRWATAFKFPAQEQITLLHDVEFQVGRTGAITPVARLAPVLVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+++RAG+VIP++V+++ + R D++ F Sbjct: 356 ATLHNADEIERL-----------GVRIGDTVVIRRAGDVIPQIVNVLTDRRPIDSREIRF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S + R A RCTGGL C+AQ+ LKHFVSR A +I+G+G + Sbjct: 405 PIHCPVCGSAIERIEGE------AVIRCTGGLICAAQRKGALKHFVSRRAMDIDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D E + AD++ L + + + G S NL ++++K + +L Sbjct: 459 IDQLVAKE----YVTTAADLYRL------NLDILARLERMGPKSAQNLINALDKSKQTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFI++LGIR VG A +LA +Y + + D SL +V VG+I+A+ Sbjct: 509 ARFIYALGIREVGEATASNLAAHYTTLTSLMAA----------DIESLKKVQDVGEIVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 IV F+ N V L+ E+ S K S K +V TGTL ++ R + ++ Sbjct: 559 HIVNFFHEQHNRDVVNQLVNEIGISWPRMPAKKTDSPFTGKTIVLTGTLNRLTRDELKDK 618 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 + LGA V+ +S+KTD++I G+ GSKL KA +LG+KI+NE++ + LL+ + Sbjct: 619 LILLGAKVTGSVSKKTDLVIAGEAAGSKLTKANELGIKIINEDELIALLEDH 670 >gi|300897228|ref|ZP_07115672.1| DNA ligase, NAD-dependent [Escherichia coli MS 198-1] gi|300358986|gb|EFJ74856.1| DNA ligase, NAD-dependent [Escherichia coli MS 198-1] Length = 671 Score = 588 bits (1516), Expect = e-165, Method: Composition-based stats. Identities = 242/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG AR+PRW ++ KF ++ T + D++ ++GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQERLGFVARAPRWAVAFKFPAQEQMTFVRDVEFKVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|260598800|ref|YP_003211371.1| NAD-dependent DNA ligase LigA [Cronobacter turicensis z3032] gi|260217977|emb|CBA32625.1| DNA ligase [Cronobacter turicensis z3032] Length = 672 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 249/714 (34%), Positives = 397/714 (55%), Gaps = 49/714 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P + D+EYD L R A+ A P+L P+ Sbjct: 1 MESIEEKLTQLRTTLRHHEFLYHVMDAPEVPDAEYDRLMRELRALEEAHPELV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ F R+ K+ +++ + E K Sbjct: 58 PTQRVGAAPLTAFSQVRHEVPMLSLDNVFDEASFLAFNKRVQDRL--KNTDALVYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE G V AA RGDG +GED++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGLLVRAATRGDGTTGEDITLNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQTGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGVGLLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + LQ+ + G PV++ +R T ++++Y ++++ R TL +DIDG+V KVD Sbjct: 236 PRSHMARLQQFKAWGLPVSDRIRLVKTPEDVLAFYRQVEADRPTLGFDIDGVVIKVDSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQLTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTQCPVCGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S NL ++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNLVTALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA ++ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLEALINA----------SIDDLQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + F++ N + L +EV + + S K +V TG+L ++ R A Sbjct: 559 HVFNFFEEESNRAVIRDLTEEVGIHWPAPQVVKAEEIDSPFAGKTVVLTGSLSQMSRDDA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL + Sbjct: 619 KARLAALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGE 672 >gi|320173862|gb|EFW49042.1| DNA ligase [Shigella dysenteriae CDC 74-1112] Length = 671 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + +L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHLELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLKALEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|238790828|ref|ZP_04634584.1| DNA ligase [Yersinia frederiksenii ATCC 33641] gi|238721075|gb|EEQ12759.1| DNA ligase [Yersinia frederiksenii ATCC 33641] Length = 670 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 245/712 (34%), Positives = 403/712 (56%), Gaps = 47/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L ++ + P+L + + Sbjct: 1 MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITN---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R++ K + F E K Sbjct: 58 PTQRVGAAPLDAFDQVKHEVPMLSLDNVFDEESYLAFDKRVHDRL--KTAEPLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE+G+ V AA RGDG +GE+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYEEGELVRAATRGDGTTGENITVNVRTIRAIPLRLHGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV+N V+ ++++Y +++ R++L +DIDG+V KVD Sbjct: 236 PRSHIQRLMQFKAWGLPVSNRVKLCTGSDQVIAFYRQVEQDRASLGFDIDGVVIKVDSLD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++++R DA+ +F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMDQRPQDAKEITF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S + R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PDHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+FTL K+ + G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLFTLTA------GKLTGLDRMGPKSAQNLIVALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + N D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNLRAA----------DIEALKSVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F N +E L K +S + + + S K +V TG+L + R +A++ Sbjct: 559 HVLNFLSEEHNQKVIETLEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL + Sbjct: 619 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLLGE 670 >gi|328542977|ref|YP_004303086.1| DNA ligase, NAD(+)-dependent [polymorphum gilvum SL003B-26A1] gi|326412723|gb|ADZ69786.1| DNA ligase, NAD(+)-dependent [Polymorphum gilvum SL003B-26A1] Length = 721 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 321/722 (44%), Positives = 464/722 (64%), Gaps = 18/722 (2%) Query: 12 LSIEQARKELSSLEQE------------ISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59 ++ + A + SL ++ I+ HD Y+ P + D+EYDAL+RR AI Sbjct: 1 MNEKSAAAAVESLSRQEAEAELARLAAEIAAHDQRYFAEDAPTVSDAEYDALRRRNAAIE 60 Query: 60 HAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119 FPDL R + P +IG + KVTH+IP LSL+ ++ +D+R F+ R+ RF + Sbjct: 61 ERFPDLVRE---DSPSARIGAAPSEGFGKVTHAIPMLSLDNAFSDDDVRDFVARVRRFLR 117 Query: 120 KKDD-NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 ++ T EPKIDG +++RYE G+ V AA RGDG GE+V+A R I IP L Sbjct: 118 LDPLMGALGVTAEPKIDGLSLSLRYEGGRLVSAATRGDGTVGENVTANARTIADIPHRLP 177 Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237 +PE++EVRGEVY++ DF ALN M A G K +ANPRNAA+G LR+LNP R L Sbjct: 178 AGVPEVVEVRGEVYMAHADFAALNARMAANGGKVFANPRNAAAGSLRQLNPDITAARPLK 237 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 FF + G+ SE+ Q EM+ + GFPVN + + ++ Y+ ++ R+TL Y Sbjct: 238 FFAYAWGEMSEVPRATQMEMVSLIGAWGFPVNPRMVLCRSVEELIDVYHAIEEERATLGY 297 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+VYKVD LQ +LG +RSPRW I+HKF ++A T L DI+IQ+GRTG LTPVA+ Sbjct: 298 DIDGVVYKVDRLDLQARLGFVSRSPRWAIAHKFPAEKAFTILRDIEIQVGRTGALTPVAK 357 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 LEPV +GG +++NATLHNEDYI+G+ G+ +RGG+D+R+GD V ++RAG+VIP+V+D+ Sbjct: 358 LEPVTVGGVVVSNATLHNEDYIRGIGQDGEPIRGGKDLRIGDTVQIQRAGDVIPQVIDVD 417 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 + +R DA PF+FP+ CP+C S VR++N KTG+ A RCTGGL C+AQ E+LKHFVS Sbjct: 418 LAKRPADAVPFAFPTVCPVCGSHAVREINAKTGRPDAVRRCTGGLVCAAQAKEKLKHFVS 477 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGDVSVT 536 R+AF+IEGLG +Q++FF+ IR PADIFTL+ R S K++N G+G+ S Sbjct: 478 RNAFDIEGLGDKQVEFFYDLPPEEGGIRTPADIFTLEARDAASPIRKLKNRDGWGETSAR 537 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 NL+ +I+ RR + L RFIF+LGIRHVG A+ LA+ Y S+ FA + H +D W Sbjct: 538 NLFAAIDARRRVDLNRFIFALGIRHVGEGNAKLLARAYGSWDAFAAAMRAAADHGSDAWA 597 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 L + VG+++A+A+V+F+ P N A++ALL EV+P S + K +VFTG Sbjct: 598 ELNAIDGVGEVVAEAVVQFFAEPHNREALDALLAEVTPLDAEKVAAEGSPVAGKTVVFTG 657 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 L+++ R +A+ +LGA V+ +S+KT +++ G GSKL+ AQ+L ++++ E+ + Sbjct: 658 ALERMTRDEAKAMAERLGAKVAGSVSKKTSLVVAGPGAGSKLKTAQELDIEVITEDDWFD 717 Query: 717 LL 718 L+ Sbjct: 718 LV 719 >gi|239825842|ref|YP_002948466.1| NAD-dependent DNA ligase LigA [Geobacillus sp. WCH70] gi|239806135|gb|ACS23200.1| DNA ligase, NAD-dependent [Geobacillus sp. WCH70] Length = 670 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 250/717 (34%), Positives = 389/717 (54%), Gaps = 53/717 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + A K + L + ++ ++ YY +P + D+EYD L + A+ +PDL Sbjct: 1 MDRQAAMKRIEELRELLNKYNYEYYVLDRPSVPDAEYDRLMQELIALEEQYPDLK---TK 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG+ + KV H P LSL +N DLR F R+ ++ + + + E Sbjct: 58 DSPSQRVGGQALDAFQKVEHRTPMLSLANAFNEGDLRDFDRRVR----QEVGDDVAYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG +GED++ ++ I ++P L+ + +E RGE Sbjct: 114 LKIDGLAVSVRYEDGYFVQGATRGDGVTGEDITENLKTIRSLPLRLNEPV--TLEARGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F LN++ G + +ANPRNAA+G LR+L+P +R+L+ FV+ L E+ Sbjct: 172 YMPKASFERLNEQRRNRGEELFANPRNAAAGSLRQLDPKIAASRHLDLFVYSLANAEELG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L ++ LGF N R+ ++ + NE RS LPY+IDG+V KVD F Sbjct: 232 IDSHSAALDYLQQLGFKTNPERRRCANIDEVIQFVNEWHEKRSHLPYEIDGIVVKVDSFE 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 QKQLG A+SPRW +++KF ++ T+L+ I++ +GRTG++TP A LEPV + G + Sbjct: 292 QQKQLGATAKSPRWAVAYKFPAEEVVTKLIGIELSVGRTGVVTPTAILEPVRVAGTTVQR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED+I+ +DIR+GD V++K+AG++IP+VV+++ + R + PF Sbjct: 352 ATLHNEDFIR-----------QKDIRIGDSVIIKKAGDIIPEVVNVVPDRRTGEEVPFVM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S +VR A RC C AQ E L HFVSR A NIEGLG++ Sbjct: 401 PTHCPECASELVRFDGE------VALRCINPK-CPAQIREGLIHFVSRQAMNIEGLGEKV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ I AD++ L + Q + G+ S TNL +I + SL Sbjct: 454 ISQLFRE----GLIHDVADLYRLTKEQLI------RLERMGEKSATNLLRAIEASKQNSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ A+ LA+++ + L+ + +G+ +A Sbjct: 504 ERLLFGLGIRHVGAKAAKVLAEHFGTMDRLQTATK----------EELMAIHEIGEKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-----VSSEIENKKLVFTGTLQKIQRHK 665 +IV ++ P + L + K V S K +V TG L+ + R++ Sbjct: 554 SIVTYFAKPEVKELLNELRAYGVNMEYKGPKTPKPGDVHSYFAGKTVVLTGKLESLSRNE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A+E + QLG V+ +S+ TD++I G + GSKL KAQQL ++I +EE+FL ++Q Sbjct: 614 AKEKIEQLGGKVTGSVSKNTDLVIAGADAGSKLAKAQQLNIEIWDEERFLQEIEQNK 670 >gi|319407493|emb|CBI81141.1| DNA ligase [Bartonella sp. 1-1C] Length = 725 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 327/720 (45%), Positives = 463/720 (64%), Gaps = 16/720 (2%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ L+ +A EL L +EI+ HD Y++ +P I D+EYDAL RR + I FP+L R+ Sbjct: 6 IKNLTALEAASELEWLAKEIARHDVLYHRDDQPEISDAEYDALCRRNEEIEALFPELIRA 65 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P +KIG ++ K H+ P LSL+ +N ED+ +FI RI RF + + I Sbjct: 66 ---DSPSSKIGAPISEKFEKSIHAQPMLSLDNAFNFEDVSEFIERIRRFLRLPETQIIEM 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYE GK V A RG+G GE+V+ R I IP++L N P+IIEVR Sbjct: 123 TAEPKIDGLSLSLRYEAGKLVRAITRGNGSIGENVTTNARTIADIPQILQANFPDIIEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247 GEVY+ + DF LN G+ +ANPRNAA+G LR+L+ +R L FF + G+ S Sbjct: 183 GEVYMGQKDFQLLNINQQKEGKLVFANPRNAAAGSLRQLDSRITASRNLKFFAYAWGEVS 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ A+ Q M++K++ GF +N + ++SYY+ ++ R +L YDIDG+VYKV+ Sbjct: 243 EMPAESQIGMMKKLKEYGFIINPLTKVFEKVEDLISYYHSIEECRQSLDYDIDGIVYKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + LQ +LG ARSPRW I+HKF ++A L DIDIQ+GRTG LTPVARL P+ +GG + Sbjct: 303 DLMLQTRLGFVARSPRWAIAHKFPAEKAIAFLEDIDIQVGRTGALTPVARLTPITVGGVV 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +TNA+LHNEDYIKG+ G+ +R GRDIRVGD V+++RAG+VIP++VD++V +R D Sbjct: 363 VTNASLHNEDYIKGIGHKGEPIREGRDIRVGDTVIIQRAGDVIPQIVDVLVEKRPKDTPA 422 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP+C S VR+ RCTGGL CSAQ +ER+ HFVSR+AF+IEG G Sbjct: 423 FIFPHVCPVCGSHAVREEGET------VRRCTGGLICSAQAIERICHFVSRNAFDIEGFG 476 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q++FFF ++D IR P DIFTLQRRQ+ S ++EN+ GFG VSV LY++IN RR Sbjct: 477 RKQVEFFFHAQDKMLCIRSPVDIFTLQRRQENSLKRLENMEGFGVVSVRKLYNAINARRE 536 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII------AHNNDDWLSLIRV 601 ISL RF+F+LGIRH+G A+ LA+ Y +Y F + I N+ W+ L + Sbjct: 537 ISLSRFLFALGIRHIGEVKAQRLARAYQNYTAFETAAMSAIMPPDKNNEGNEIWVELTNI 596 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G + +AI++FYQ N + ALLKEV+P S I K + FTGTL+ + Sbjct: 597 EGIGFRVGKAIIDFYQEVHNRDILSALLKEVTPLHEAPVTIDYSPIVGKIITFTGTLEHM 656 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R +A+ +LGA S +S+KTD+++ G GSKL KAQQLG+++++E+ +L L+ + Sbjct: 657 SRDEAKSLAERLGAKTSNSISKKTDLLVAGFGAGSKLTKAQQLGIEVLDEKNWLKLIDGH 716 >gi|268593162|ref|ZP_06127383.1| DNA ligase, NAD-dependent [Providencia rettgeri DSM 1131] gi|291311208|gb|EFE51661.1| DNA ligase, NAD-dependent [Providencia rettgeri DSM 1131] Length = 671 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 244/709 (34%), Positives = 400/709 (56%), Gaps = 49/709 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++E+ L++++ +H+ Y+ P I D EYD L +R I P+L S + P + Sbjct: 4 KQEIDELKKQLRHHEYQYHVLDAPEIPDVEYDKLMQRLKEIEAQHPELVTS---DSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + V H IP LSL+ +++ E F R+ K+ + F E K+DG Sbjct: 61 VGAAPLAAFDTVRHEIPMLSLDNVFDEESYLAFDKRVRDRL--KNHQELTFCCELKLDGL 118 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKN 196 +++ YE G+ V AA RGDG GE+++A +R I IP L + P+ +E+RGEV++ + Sbjct: 119 AVSLLYENGELVQAATRGDGTVGENITANVRTIRAIPLRLRGSNIPDRVEIRGEVFMPQK 178 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-AKGQ 254 F ALN++ K +ANPRNAA+G LR+L+P R L F+ +G+G Sbjct: 179 GFEALNEQARKTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGGSLPDTH 238 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 Y+ L + + G PV++ V+ ++ +Y+E++ +R L +DIDG+V KV+ ++Q++ Sbjct: 239 YDRLMQFKAWGLPVSDYVQLRVGHQAVLDFYHEIEQVRPDLGFDIDGVVIKVNSIAIQEE 298 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PRW + KF ++ T L D++ Q+GRTG +TPVARLEPV + G +++NATLH Sbjct: 299 LGFVSRAPRWATAFKFPAQEQVTLLKDVEFQVGRTGAITPVARLEPVQVAGVVVSNATLH 358 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L + +GD V+++RAG+VIP++V ++V++R D++ FP+ C Sbjct: 359 NADEIERL-----------GVHIGDTVIIRRAGDVIPQIVSVVVDKRPTDSREIVFPTHC 407 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S + R A RCTGGL C AQ+ E LKHFVSR A +++G+G + +D Sbjct: 408 PVCGSDIERVEGE------AVARCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQL 461 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E ++ PAD++ L S + + G S NL D++NK + +L RFI Sbjct: 462 VEKE----YVKTPADLYQL------SAGILTGLDRMGPKSAQNLVDALNKSKQTTLARFI 511 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LGIR VG A +LA +Y + + D SL V +G ++A+ +V Sbjct: 512 YALGIREVGEATAANLAAHYTTLEAVMTA----------DEESLKTVQDIGHVVAKHVVN 561 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 F++ P N +E LL + + + + S K +V TG++ + R +A++ + Sbjct: 562 FFREPHNQAVIEDLLTKANIHWPEVKVVNSAEIDSPFAGKTVVLTGSMSVLTRDEAKDKL 621 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA VS +S+KTD++I G+ GSKL KA +LG+++++E + + LL Sbjct: 622 VALGAKVSGSVSKKTDLVIAGEAAGSKLAKANELGIRVIDENELVRLLN 670 >gi|302390293|ref|YP_003826114.1| DNA ligase, NAD-dependent [Thermosediminibacter oceani DSM 16646] gi|302200921|gb|ADL08491.1| DNA ligase, NAD-dependent [Thermosediminibacter oceani DSM 16646] Length = 672 Score = 587 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 250/716 (34%), Positives = 384/716 (53%), Gaps = 48/716 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + +A + L + I+YH+ YY Y P+I D+EYD L R+ + + FP+L P Sbjct: 1 MDRSEAEARIKELRELINYHNRQYYVYDNPVISDAEYDKLMRQLEKLEKQFPELI---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GGE +V H +P +SL ++ +L+ F R+ + + +E Sbjct: 58 DSPSQRVGGEPLPYFTQVVHRVPMMSLANAFDSGELKDFHRRVTEAVGS----EVQYVVE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVR 188 PKIDG ++I YE G F AA RGDG GEDV+ ++ I ++P P ++EVR Sbjct: 114 PKIDGLAVSITYENGIFKTAATRGDGEVGEDVTQNVKTIKSVPLSLDFPPDKRPAVLEVR 173 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVY+ K DF LN+E G +ANPRNAA+G LR+L+P R L +++GLG Sbjct: 174 GEVYLPKEDFRKLNEEREEQGLPLFANPRNAAAGSLRQLDPKVTAKRPLAVYIYGLGYAE 233 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 I + YE+LQ + +G VN V + F ++ Y R LPY+IDG+V KV+ Sbjct: 234 GIEFETHYEVLQFFKRIGLRVNPHVVLFDRFQDVIDYCMSWNEKRHDLPYEIDGMVIKVN 293 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 Q LG A+SPRW I++KF +Q T + DI +++GRTG+LTP A LEPV + G+ Sbjct: 294 SLKQQGILGATAKSPRWAIAYKFPAEQKKTVIKDIIVRVGRTGVLTPTAILEPVRVAGST 353 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHNEDYI+ +DI++GD V++ +AG+VIP+VV+++ +R + Sbjct: 354 VSKATLHNEDYIR-----------EKDIKIGDTVIIHKAGDVIPEVVEVVKEKRTGKERD 402 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P CP C S VR AA+RCT C AQ ++HF SRDA +I GLG Sbjct: 403 FEMPHRCPECGSEAVRLPGE------AAYRCTNSTGCPAQIRRSIEHFASRDAMDIRGLG 456 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + I+ AD++ L+R + G+ S NL +I + + Sbjct: 457 SAIVSLLISQ----GLIKDAADLYYLKREDLV------PLERMGEKSAANLLAAIEESKK 506 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 L+R I++LGI VG+ A LA+ + S + + + LI+VP +GD Sbjct: 507 RPLDRLIYALGIPFVGSRTASLLAEAFSSIDDLQKA----------KYEDLIKVPEIGDK 556 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 IAQ+I+ F++ + + L + + ++ V TGTL+K R +A Sbjct: 557 IAQSILAFFRQEQTNDLISRLRAAGVNMEAQKKAEGPRPLDGLTFVLTGTLEKYTRQQAT 616 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 E + +LG V+ +S+KTD ++VG +PGSK E A +LG+KI+NE +F L++++ Sbjct: 617 ELIEKLGGRVTGSVSKKTDYVVVGKDPGSKYENALKLGIKILNEGEFEELIEKWKA 672 >gi|209963935|ref|YP_002296850.1| DNA ligase, NAD-dependent [Rhodospirillum centenum SW] gi|254781401|sp|B6IRF1|DNLJ_RHOCS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|209957401|gb|ACI98037.1| DNA ligase, NAD-dependent [Rhodospirillum centenum SW] Length = 719 Score = 587 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 302/738 (40%), Positives = 433/738 (58%), Gaps = 40/738 (5%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 + + IP+E L+++QA E ++L +EI++H YY P I DS YDAL+ R + Sbjct: 4 LSDTRHIPVETLTLDQAAAEHAALVREIAHHRALYYGKDAPEIADSAYDALEHRLAGLEA 63 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP+L P+ P +G + KV H +P LSL+ + ED+ F+ +I RF Sbjct: 64 RFPELV---TPDSPTQTVGAAPSAGFGKVRHRVPMLSLDNAFTAEDVDGFVEQIARFLNL 120 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 K+ + + F EPKIDG +++RYE G AA RGDG GEDV+A +R I IP L Sbjct: 121 KEVDGLEFVAEPKIDGLSLSLRYENGALAQAATRGDGAEGEDVTANVRTIREIPDRLPAG 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P ++EVRGEVY+ + +F ALN G K +ANPRNAA+G LR+L+P+ R L FF Sbjct: 181 APSVLEVRGEVYMVREEFFALNRRQAEAGEKVFANPRNAAAGSLRQLDPSVTAKRPLCFF 240 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G SE Q+E LQ+++ LGF V R + ++ YY + + R+ LP+DI Sbjct: 241 AYSWGDLSEPLGATQWEALQRLKALGFRVPAQSRLCRSKAELLDYYAGIGAGRAALPFDI 300 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKV+ LQ++LG R R+PRW +HKF ++A T L I IQ+GRTG LTPVA LE Sbjct: 301 DGVVYKVNRLDLQERLGFRTRTPRWATAHKFPAERAQTLLRAITIQVGRTGALTPVAELE 360 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG +++ ATLHN D I +DIRVGD V+V+RAG+VIP+VV+++ Sbjct: 361 PVTVGGVVVSRATLHNADEIAR-----------KDIRVGDTVVVQRAGDVIPQVVEVVTE 409 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R D+ PF FP CP C S VR+ + A RCTGGL C AQ +ERL+HFVSR+ Sbjct: 410 RRPADSAPFVFPDHCPECGSAAVREED------GAVSRCTGGLVCPAQAVERLRHFVSRN 463 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+IEGLG +++ F+ + IR PADIFTL+RR+ ++ + GFG SV NL+ Sbjct: 464 AFDIEGLGIERIQLFYDQDR----IRSPADIFTLERREAQRLDRLVAMTGFGRKSVENLF 519 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN------- 592 +I+ RR I L+RFIF+LGIR VG A+ LA+ Y S + + + A + Sbjct: 520 RAIDARRRIPLDRFIFALGIRQVGEATAKLLARTYRSVGPWTERMAAAAAERSANPDEAK 579 Query: 593 ------DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG--RHEKNVS 644 + + L + +G +A I F+ P N A++ALLKE+ + Sbjct: 580 KPELVGEAYAELCAIEQIGMSVADDICAFFAEPHNRDALDALLKELEAVEDHVPPPRADG 639 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 S + K +VFTGTL+ + R +A+ LGA V+ +S KTD ++VG + GSK KA++L Sbjct: 640 SPVAGKTVVFTGTLETMGRSEAKARAEALGAKVAGSVSGKTDYVVVGADAGSKAAKAREL 699 Query: 705 GVKIMNEEQFLFLLQQYN 722 G+ I+ E+++L L+ Q Sbjct: 700 GLTILTEQEWLDLISQPG 717 >gi|13471538|ref|NP_103104.1| DNA ligase [Mesorhizobium loti MAFF303099] gi|75543387|sp|Q98KC4|DNLJ_RHILO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|14022280|dbj|BAB48890.1| DNA ligase [Mesorhizobium loti MAFF303099] Length = 734 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 298/737 (40%), Positives = 438/737 (59%), Gaps = 32/737 (4%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+++LS +A EL L +EI+ HD Y+ P I D+EYDAL+RR AI FP L R Sbjct: 5 PVDSLSESEAEAELKRLAEEIAGHDRRYHAEDAPTITDAEYDALRRRNLAIEERFPGLVR 64 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + P ++G KV H++P LSL K + ED+ FI R RF+ + D I Sbjct: 65 E---DSPSRRVGAPPAEGFAKVRHAVPMLSLAKAYTDEDVTDFIERGRRFFDRDKDLDIA 121 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 FT EPKIDG ++RYE G FV A RGDG GED++A +R I IP L + P++IE Sbjct: 122 FTAEPKIDGLSASLRYENGVFVQGATRGDGAVGEDITANLRTIADIPAKLKGSGWPDVIE 181 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 +RGEVY++ +F AL A G + Y NPRN A+G LR+ + + +R L FF + G Sbjct: 182 IRGEVYMTYAEFEALKARSAAAGGQDYVNPRNTAAGSLRQKDASVTASRNLKFFAYAWGF 241 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 T+ A QYE +QK GF ++ + +A + +V+ Y+ ++ RS+L YDIDG+VYK Sbjct: 242 TTADPAPTQYESVQKFADWGFKISPLMVRAKSVEELVAQYHLIEEQRSSLGYDIDGVVYK 301 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ LQ++ G PRW ++HKF +QA T + IDIQ+GRTG L PVARL PV +GG Sbjct: 302 VDQLELQRRWGFVTGEPRWAVAHKFPAEQAMTTVQKIDIQVGRTGTLAPVARLAPVTVGG 361 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ N TLHNEDYIKG D++G +R G D+R+GD V+++RAG+VIP++V +++++R DA Sbjct: 362 VVVENVTLHNEDYIKGFDSNGLPIRDGIDVRIGDTVVIQRAGDVIPQIVSVVIDKRPADA 421 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ FP CP+C S R++N KTGK + RCTG L C+AQ +ERL+HFVSR A +IEG Sbjct: 422 VPYEFPHTCPVCGSPATREINEKTGKEDSRRRCTGELICAAQAVERLRHFVSRGALDIEG 481 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ----------------------TSTTK 523 LG + +D FF A I+ ADIFTL+ R+ + Sbjct: 482 LGAENIDTFFN----AGLIKTAADIFTLRDRRPAVTKALAERREEQARQREAASGKTRKN 537 Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583 + ++ + L+ +I+ RR L+RFIF+LGIRH+G A LAK + + + + Sbjct: 538 VRSVEDRNYEGLDKLFAAIDSRREPELDRFIFALGIRHIGETTAAVLAKTFSTIEELIR- 596 Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 + A D V +GD + A+ +F+ N RN ++ LL++V P + Sbjct: 597 VGKETAAAEDPHTVFPSVNGIGDTVIDALCDFFGNERNDDVLDKLLEQVKPKPYIVTVSA 656 Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 SE+ K +VFTGTL+K+ R +A+ +LGA V+ +S KTD+++ G GSKL+ A + Sbjct: 657 DSEVAGKTIVFTGTLEKMTRSEAKAMAERLGAKVAGSVSAKTDLLVAGPGAGSKLKLASE 716 Query: 704 LGVKIMNEEQFLFLLQQ 720 LGV++++E+ +L + + Sbjct: 717 LGVEVIDEDTWLQRVGK 733 >gi|134300185|ref|YP_001113681.1| NAD-dependent DNA ligase [Desulfotomaculum reducens MI-1] gi|190359251|sp|A4J703|DNLJ_DESRM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|134052885|gb|ABO50856.1| DNA ligase, NAD-dependent [Desulfotomaculum reducens MI-1] Length = 670 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 248/716 (34%), Positives = 385/716 (53%), Gaps = 49/716 (6%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + LS +Q++ + +L +EI++H+ YY +P I D++YD L + + P+L Sbjct: 1 MADLS-QQSKARVEALRREINHHNYQYYVLDQPTITDAQYDQLMQELLRLEERHPELV-- 57 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ P ++GG++ V H IP LSL + DLR+F R+ + + + Sbjct: 58 -TPDSPTQRVGGQVQRGFSSVPHKIPMLSLGNAFGEGDLREFDRRVRSYL---PGEEVKY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG I++ YEKG V A RGDG GED++ ++ I IP L+ +P +EVR Sbjct: 114 VVELKIDGLAISLWYEKGLLVRGATRGDGELGEDITINLKTIRAIPLRLTQEVP-FLEVR 172 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE Y+ K+ F+ LN+ G +ANPRNAA+G LR+L+P R L+ F++ +G Sbjct: 173 GEAYMPKDSFVRLNEAREEAGEPLFANPRNAAAGSLRQLDPKITAARNLSVFMYAIGYIE 232 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E L ++ LG +N + + ++ + ++ ++ R LPY IDG+V KV+ Sbjct: 233 GAKPPSHAESLAWLKELGIRINPDHQVCGSIDEVIDFISQWQAKRYQLPYAIDGMVIKVN 292 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 Q++LG +SPRW I++KF +QA + + DI I++GRTG+LTP A LEPV + G Sbjct: 293 SLEQQQRLGTTMKSPRWAIAYKFPAEQAVSTIKDIIIRVGRTGVLTPTAILEPVQLAGTT 352 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHNED I+ +DIR+GD+ LV++AG++IP++V + +R + P Sbjct: 353 VSKATLHNEDIIR-----------QKDIRIGDKALVQKAGDIIPEIVQVYPEKRTGNEVP 401 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P CP C + VVR AAHRCT CSA+ E + HFVSR A +I GLG Sbjct: 402 FILPVTCPECGAEVVRVAGE------AAHRCTN-ENCSAKSREGIIHFVSRSAMDIMGLG 454 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ K ++ PAD++ L+ G S L +I +N Sbjct: 455 EGIVNQLIK----GGLVKDPADLYDLKYEDLIRQ------ERMGARSSQKLLAAIEASKN 504 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SL + +F LGIRHVG A+ LA+ + S Q Q L + +G Sbjct: 505 NSLGQLLFGLGIRHVGERAAKILARQFGSMQALMQAT----------AEDLTGISEIGPR 554 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHK 665 IA++I+E++ N +E L K + E ++ + K V TGTL+ R + Sbjct: 555 IAESIMEYFSRQENQGLIERLSKAGVNMLEEVEQTESTDQTLSGKTFVVTGTLEGFSRQE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 AQ + + G VS +S+KT+ ++VG+NPGSK +KA+QLG+ I+ E+ F+ LLQQ Sbjct: 615 AQRAIEERGGKVSGSVSKKTNYVVVGENPGSKHDKARQLGITILTEQDFVKLLQQQ 670 >gi|83858905|ref|ZP_00952427.1| NAD-dependent DNA ligase [Oceanicaulis alexandrii HTCC2633] gi|83853728|gb|EAP91580.1| NAD-dependent DNA ligase [Oceanicaulis alexandrii HTCC2633] Length = 695 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 299/716 (41%), Positives = 448/716 (62%), Gaps = 30/716 (4%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 L + AL+ ++A EL L +EIS HD YY+ P I D+ YDAL+ R AI FP+L Sbjct: 5 LKDVNALTSDEAASELERLAREISRHDKAYYEKDAPKISDAAYDALRARNSAIEARFPEL 64 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P +++G + + +V H++P LSL + +D+R F RI RF K D Sbjct: 65 KRK---DSPSDRVGAKPSEQFGEVVHAVPMLSLGNAFEDQDVRDFADRIRRFLNLK-DEK 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + FT EPKIDG +RYE+G+ V A RGDG +GE+V+A ++ I IP L ++P+++ Sbjct: 121 LVFTAEPKIDGLSANLRYEQGELVIGATRGDGRTGENVTANLKTIADIPHRLEGDVPDVL 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY+S DF LN G+ Y NPRNAA+G LR+++P R L FF + G Sbjct: 181 EVRGEVYMSHADFAQLNAMQEERGKPAYKNPRNAAAGSLRQIDPNVTAERPLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + SE A+ QY+ ++++ LGF +N+ + + + ++++Y +++ R+ L YDIDG+VY Sbjct: 241 ELSEPLAETQYDAVKRLGQLGFVINDDMVRVESVEDVLAHYRALEAKRADLGYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD Q++LG AR+PRW I+HKF+ ++A TRL I+IQ+GRTG LTPVA+LEPV +G Sbjct: 301 KVDRLDWQERLGFVARAPRWAIAHKFSPEKAVTRLNAIEIQVGRTGALTPVAKLEPVTVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +++NATLHN+D I+ +D+RVGD V+++RAG+VIP+VV++++++R Sbjct: 361 GVVVSNATLHNQDEIER-----------KDVRVGDTVIIQRAGDVIPQVVEVVLDKRPEA 409 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+PF+FP+ CP+C S VR+ RCTGGL C AQ +ERLKHFVSR AF+IE Sbjct: 410 AEPFAFPTLCPVCGSHAVREEGE------VVRRCTGGLICDAQAVERLKHFVSRKAFDIE 463 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI--ENILGFGDVSVTNLYDSI 542 GLG +Q++ FF ++ PADIFTL+ R + + G+G+ S NL+ SI Sbjct: 464 GLGAKQIEAFFHE----GLVKQPADIFTLRARNEAGEINPPIQTREGWGERSAANLFGSI 519 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 ++RRNI L RF+F+LGIRHVG E AR +A+ + S+Q + + + + + + Sbjct: 520 DQRRNIGLARFLFALGIRHVGEETARLIARSFTSWQVVRE-TAEAANEPGEAFAAFMDID 578 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +G+ +A+ EF+ N A+ ALL V+ + S + K +VFTG+L++ Sbjct: 579 GIGETAVKALAEFFAESHNQDALNALLAHVTVEDAE-QVAAESPVAGKTVVFTGSLERFT 637 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+ LGA VS +S KTDI++ G GSKL+KAQ+LGV+ M E+++L L+ Sbjct: 638 RDEAKAKAQSLGAKVSGSVSGKTDILVAGPGAGSKLKKAQELGVQTMTEDEWLALI 693 >gi|94499335|ref|ZP_01305873.1| DNA ligase, NAD-dependent [Oceanobacter sp. RED65] gi|94428967|gb|EAT13939.1| DNA ligase, NAD-dependent [Oceanobacter sp. RED65] Length = 694 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 251/711 (35%), Positives = 378/711 (53%), Gaps = 46/711 (6%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ L E++ + YY P I D+EYD L + P+L + P ++G Sbjct: 25 RVAELRDELNRANHAYYVLDDPSIPDAEYDRLFHELKGLESKHPELL---TKDSPTQRVG 81 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 V H +P LSL+ ++ +D+R F RI K +SI F EPK+DG + Sbjct: 82 ATPLSEFETVAHEVPMLSLDNAFDDQDMRDFNRRISERLTTK--SSIRFACEPKLDGIAV 139 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDF 198 ++ YE GK V AA RGDG GE+++ IR + ++P L N P ++EVRGEVY+ K F Sbjct: 140 SLLYENGKLVRAATRGDGAVGENITQNIRTVYSVPLTLMGNDHPPVLEVRGEVYMPKKGF 199 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE-IFAKGQYE 256 A N + G K + NPRNAA+G LR+L+ +R L F + +G+ E Sbjct: 200 EAFNVKARERGEKTFVNPRNAAAGSLRQLDSRITASRPLEFCCYSMGRVDGAELPTVHSE 259 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L+K GF +N + G + YY + + R+ LPY+IDG+VYKVD+ LQ++LG Sbjct: 260 ILKKFSEWGFKINPEMAVVEGVEGCLDYYENLAAKRNDLPYEIDGIVYKVDDLKLQQRLG 319 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +R+PRW I+ KF ++ T L I+ Q+GRTG +TPVARLEPV +GG ++NATLHN Sbjct: 320 FVSRAPRWAIARKFPAQEEMTLLKGIEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNM 379 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D ++ L D R+GD V+++RAG+VIP+V ++ +R ++Q P CP+ Sbjct: 380 DEVERL-----------DARIGDTVVIRRAGDVIPQVASVVKEKRPDNSQKIQLPDACPV 428 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S V R A RCTGGL C+AQ+ E +KHF SR A +I+GLG + ++ Sbjct: 429 CDSHVERVEGE------AVARCTGGLVCAAQRKEAIKHFASRKAMDIDGLGDKIVEQLVD 482 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ D++ L+ S + GD S NL +I +N S +F+++ Sbjct: 483 E----GKIKSFVDLYKLKHEDIAS------LERMGDKSAQNLLKAIEASKNTSFPKFLYA 532 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG A +L +++L+ + + + LI V VG I+A+ I+ F+ Sbjct: 533 LGIREVGVATANNLVQHFLTIRALVKA----------SFDELIEVDDVGPIVAEHILNFF 582 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 P N ++ LL N + + V TGTL + R A+ Y+ QLGA Sbjct: 583 AEPHNQTIIDGLLNIGITWPEVKSVSNSELPLSGETYVVTGTLSAMGRENAKAYLQQLGA 642 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 V+ +S+KT ++ G+ GSKL KAQ L V +++EEQFL LL ++ Sbjct: 643 KVAGSVSKKTSALVAGEKAGSKLTKAQDLEVPVLDEEQFLSLLAEHGIEPE 693 >gi|238752012|ref|ZP_04613496.1| DNA ligase [Yersinia rohdei ATCC 43380] gi|238709712|gb|EEQ01946.1| DNA ligase [Yersinia rohdei ATCC 43380] Length = 670 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 246/712 (34%), Positives = 405/712 (56%), Gaps = 47/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L+ + +H+ YY P I D+EYD + ++ + P+L + + Sbjct: 1 MESIIQQINQLKTSLRHHEHQYYVLDAPEIPDAEYDRMMQQLRELEAQHPELITN---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + +V H +P LSL+ +++ E F R++ K + F E K Sbjct: 58 PTQRVGGAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRL--KTAEPLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITVNVRTIRAIPLRLHGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNEEARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLVDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV++ V+ ++++Y +++ R+ L +DIDG+V KVD + Sbjct: 236 PRSHIQRLMQFKDWGLPVSDRVKLCTGSDQVIAFYRQVEQDRAELGFDIDGVVIKVDSLN 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++ +R PDA+ F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPPDAKEILF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S + R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PDHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+FTL K+ + G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLFTLTA------GKLTGLDRMGPKSAQNLIVALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + N D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLANLRAA----------DIDALKSVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F N +EAL + ++ + + + S K +V TG+L + R +A++ Sbjct: 559 HVLNFLNEEHNQKVIEALEQVITWPEPQRIITEEIDSPFAGKTVVLTGSLTVLSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+K+++E + + LL + Sbjct: 619 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLIKAQELGIKVIDEAEMILLLGE 670 >gi|84686905|ref|ZP_01014789.1| DNA ligase, NAD-dependent [Maritimibacter alkaliphilus HTCC2654] gi|84665102|gb|EAQ11582.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium HTCC2654] Length = 710 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 292/720 (40%), Positives = 426/720 (59%), Gaps = 13/720 (1%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M +E L AR EL+ L ++ + Y+ P + D+ YDA KRR I Sbjct: 1 MTGHSETAVEKLDEAGARAELARLADLLASANTAYHTEDAPEMSDAAYDAAKRRNAEIEA 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP+L R + P +++G KV H + LSL ++ + + F ++ F Sbjct: 61 RFPELKRD---DSPTDQVGAAPAEGFSKVRHRVRMLSLANAFDDDHVIDFDRQVRAFLGF 117 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 + + FT EPKIDG +++RYE G+ + AA RGDG GE+V+A R I IP+ LS Sbjct: 118 SAEEPLAFTAEPKIDGLSLSLRYENGELMQAATRGDGGEGENVTANARTIDDIPQRLSGA 177 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFF 239 P+++EVRGEVY+S +DF LN+ A G K +ANPRNAA+G LR+L+ F+ Sbjct: 178 -PDVLEVRGEVYMSHDDFARLNESQSAKGGKTFANPRNAAAGSLRQLDSRITEARPLRFY 236 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ S+ A Q ++K+ LGF N + T + +Y+ ++ R+TL YDI Sbjct: 237 AYAWGELSDPLADTQMGAIEKLADLGFSTNPLTKIVETPEAMFDHYHAIEEQRATLGYDI 296 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKV++ +LQK+LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL Sbjct: 297 DGVVYKVNDLALQKRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLS 356 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG +++NATLHNEDYI G D+ G +RGG+DIRVGD V V RAG+VIPKV D+ + Sbjct: 357 PVTVGGVVVSNATLHNEDYIAGRDSKGGDIRGGKDIRVGDWVQVYRAGDVIPKVADVDLT 416 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R DA+P+ FP CP C S +R+ A RCTGG+ C AQ +E+LKHFVSR Sbjct: 417 KRPDDAEPYVFPDTCPECGSEAIREEG------DAVRRCTGGMICPAQAVEKLKHFVSRS 470 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+IEGLG +Q++ F+ D IR PADIFT RR + K++N G+G+ S L+ Sbjct: 471 AFDIEGLGAKQVEAFYF--DEGLPIREPADIFTFARRDGAALAKLKNRDGWGEKSAAKLF 528 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 ++I +RR I L R IF+LGIRHVG A LA++Y + F + W L+ Sbjct: 529 EAIEERRRIPLNRVIFALGIRHVGENSANLLARHYGDWPTFEAAMTGASPEGGAAWEELL 588 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 + VG+ +A ++V + +++ L+ E+ + S + K +VFTGTL+ Sbjct: 589 SIDGVGETMATSLVTTFHQEAERASIDRLVAELDIEPVEAPQTEGSPVAGKTVVFTGTLE 648 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 K+ R +A+ LGA VS +S KTD+++ G GSK +KA +LG++ ++E+ +L L+ Sbjct: 649 KMTRAEAKARAEALGAKVSGSVSAKTDLLVAGPGAGSKAKKAAELGIETIDEDGWLDLIN 708 >gi|83592275|ref|YP_426027.1| DNA ligase (NAD+) [Rhodospirillum rubrum ATCC 11170] gi|123753272|sp|Q2RVV5|DNLJ_RHORT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|83575189|gb|ABC21740.1| DNA ligase (NAD+) [Rhodospirillum rubrum ATCC 11170] Length = 698 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 282/719 (39%), Positives = 421/719 (58%), Gaps = 31/719 (4%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 +IP+ L+ +A +EL L EI+ HD Y+Q P I D EYDAL RR + I AFP+L Sbjct: 1 MIPVADLTEAEAARELERLAAEIARHDRLYHQQDAPEITDGEYDALVRRNNEIEAAFPEL 60 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P +G KVTH++P LSL +++ ++ R+F RI RF + + Sbjct: 61 VRG---DSPSAHVGAAPAEGFAKVTHALPMLSLGNVFSDDEAREFDQRIRRFLSLDGETT 117 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV--LSLNIPE 183 I + EPKIDG + RYE G + AA RGDG +GED++A + + +P+ +PE Sbjct: 118 ISYVAEPKIDGLSFSARYENGVYRRAATRGDGTTGEDITANLATLTDLPQRLTGDGPVPE 177 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 ++EVRGEV+++K DF ALN I G KP+ANPRNAA+G LR+L+P +R L+ F + Sbjct: 178 VLEVRGEVFMTKADFRALNQRQIDAGAKPFANPRNAAAGSLRQLDPEITRSRSLSLFAYA 237 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G+ + + + L++++ GFPVN R ++ + + R+ L YDIDG+ Sbjct: 238 SGEVKGLEVESHHAFLERLKTWGFPVNPQTRPCQGVEDLIEATHALALQRAALDYDIDGV 297 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 VYKVD QK+LG +R+PRW I+ KF ++A T + I IQ+GRTG LTPVA LEPV Sbjct: 298 VYKVDRVDWQKRLGFVSRAPRWAIARKFPAERAQTTVKAIQIQVGRTGTLTPVAILEPVT 357 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 +GG ++ ATLHNED I +D+R+GD V ++RAG+VIP+VV++++++R Sbjct: 358 VGGVVVGRATLHNEDEIAR-----------KDVRIGDMVTIQRAGDVIPQVVEVLLDQRP 406 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 D+ PF FP CP+C S VR A RC GGL CSAQ +ERLKHFVSRDAF+ Sbjct: 407 ADSAPFVFPETCPVCGSHAVRQEGE------VARRCAGGLICSAQAVERLKHFVSRDAFD 460 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT--STTKIENILGFGDVSVTNLYD 540 IEGLG + ++ F I PADIF L+ + + + + G+G S NL+ Sbjct: 461 IEGLGGKHIETFHNE----GLITQPADIFALEAKDNEPGALQHLRSREGWGPKSAENLFK 516 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 +I R+ I L+RFI++LGIR VG AR LA +Y S+ + + ++ ++ + L Sbjct: 517 AITARKTIPLDRFIYALGIRQVGQATARLLAGHYASFAAWRKAMDEAQTEGSEAFADLQN 576 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTL 658 + +G +A+ +V F+ N A++AL+ R + S + K +VFTGTL Sbjct: 577 IESIGPSVARDLVAFFGEEHNRAALDALIDAGVEVLDFARPQAAGDSPLAGKTVVFTGTL 636 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + R +A+ LGA V+ +S KTD ++VG + GSK +KA++LG+ +++E +F + Sbjct: 637 DTMSRGEAKARALALGAKVTGSVSAKTDYVVVGADAGSKEKKARELGLTVLSEAEFRAM 695 >gi|311278661|ref|YP_003940892.1| DNA ligase, NAD-dependent [Enterobacter cloacae SCF1] gi|308747856|gb|ADO47608.1| DNA ligase, NAD-dependent [Enterobacter cloacae SCF1] Length = 671 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 255/713 (35%), Positives = 393/713 (55%), Gaps = 48/713 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L++L + +H+ Y+ P + D+EYD L R + P+L P+ Sbjct: 1 MEPIEQQLTALRATLRHHEYLYHVMDAPELPDAEYDRLMRELRELEAKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G E + +V H IP LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAEPLGAFSQVRHEIPMLSLDNVFDEESFLAFNKRVQDRL--KSSDKLTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED++A +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGLLVRAATRGDGTTGEDITANVRTIRAIPLKLRGDDVPARVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +NDE G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINDEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L++ + G PV++ V N+ +++YY +++ R TL +DIDG+V KVD Sbjct: 236 PASHLGRLRQFKSWGLPVSSRVTLCNSPEEVLAYYRKVEEDRPTLGFDIDGVVIKVDSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPDDTREIEF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A ++EG+G + Sbjct: 405 PAHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVEGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + S Sbjct: 459 IDQLVEKE----YVLTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKETSF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA +Y S + L VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAHYGSLEALIAA----------SIDDLQTVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N ++ LL E + + + S K +V TG+L + R A+ Sbjct: 559 HVFNFFAEESNREVIQQLLAEGIHWPAPVVVKAEEIDSPFAGKTVVLTGSLSLMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + L LL + Sbjct: 619 ARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEAEMLRLLGE 671 >gi|238765534|ref|ZP_04626449.1| DNA ligase [Yersinia kristensenii ATCC 33638] gi|238696249|gb|EEP89051.1| DNA ligase [Yersinia kristensenii ATCC 33638] Length = 670 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 250/712 (35%), Positives = 403/712 (56%), Gaps = 47/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L ++ + P+L + + Sbjct: 1 MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITN---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R++ K + F E K Sbjct: 58 PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRL--KSAEPLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE+G+ V AA RGDG +GE+++A +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYEEGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F LNDE G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNDEARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV+N V+ ++++Y +++ R+ L +DIDG+V KVD Sbjct: 236 PRSHIQRLMQFKHWGLPVSNRVKLCTGSEQVITFYRQVEQDRAGLGFDIDGVVIKVDSLD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++ +R DA+ +F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDAKEITF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S + R A RCTGGL C+AQ+ E LKHFVSR A ++EG+G + Sbjct: 405 PEHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVEGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+FTL K+ + G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLFTLTA------GKLTGLDRMGPKSAQNLIAALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + N D +L VP VG+I+A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRNLTNLRAA----------DIEALKSVPDVGEIVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F N +EAL K +S + + + S K +V TG+L + R +A++ Sbjct: 559 HVLNFLGEEHNQKVIEALEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL + Sbjct: 619 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLLGE 670 >gi|153872826|ref|ZP_02001606.1| NAD-dependent DNA ligase [Beggiatoa sp. PS] gi|152070708|gb|EDN68394.1| NAD-dependent DNA ligase [Beggiatoa sp. PS] Length = 670 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 252/712 (35%), Positives = 391/712 (54%), Gaps = 48/712 (6%) Query: 12 LSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ++I Q +++ + L ++ + YY +P I DSEYD L R A+ +P L + Sbjct: 1 MTISIQIQQQATQLRDTLNKQNYYYYVLDEPRIPDSEYDKLMRELHALEENYPALITA-- 58 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G + + +V H+IP LSL ++ ++++ F R+ + + Sbjct: 59 -DSPTQRVGAKPLTAFSEVIHTIPMLSLNNAFDDKEVQDFDKRVRERLG---GEPVEYVA 114 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189 EPK+DG I++RYE G V AA RGDGH GEDV+ ++ I TIP L + P ++EVRG Sbjct: 115 EPKLDGLAISLRYENGLLVKAATRGDGHQGEDVTQNVKTIKTIPLRLLGDDYPRVLEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EV++SK DF LN + G+K +ANPRNAA+G LR+L+ TR L F + +G Sbjct: 175 EVFMSKADFEKLNQQQTLQGQKTFANPRNAAAGSLRQLDSRVTATRSLTFLAYTIGVVEG 234 Query: 249 -IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 ++L ++ G P++ + + G + YY R LP++IDG+VYKV+ Sbjct: 235 GELPHRHNKILYTLQKWGIPISIYIEMVHDIQGCLKYYQNTLLYREKLPFEIDGVVYKVN 294 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 Q+ LG +R+PRW I+HK ++ T +L ID+Q+GRTG LTPVARL PV +GG Sbjct: 295 SLEQQEILGFVSRAPRWAIAHKLPAQEVLTEVLAIDVQVGRTGALTPVARLAPVTVGGVT 354 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +TNATLHN+D I ++IRVGD V+V+RAG+VIP++V ++ +R + QP Sbjct: 355 VTNATLHNQDEIDR-----------KNIRVGDTVIVRRAGDVIPEIVGVLPEKRPNNTQP 403 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P CPIC S V R A RCTGGL C+AQ+ + ++HF SR A +I+GLG Sbjct: 404 FVLPKKCPICDSDVTRVEGE------AVARCTGGLYCAAQRKQAIQHFASRRAMDIDGLG 457 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ ++ +E ++ ADI+TL Q N+ G S N+ ++ K ++ Sbjct: 458 EKLVEQLINNE----LVKNIADIYTLNHEQW------ANLERMGPKSAENIIKALEKSQS 507 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 + +F+++LGIR VG A +LA+ + + L ++ +G I Sbjct: 508 TTFAKFLYALGIREVGESTAHTLAQSFGRLEKLIPATEA----------DLEQIQDIGPI 557 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKA 666 +A+ IV F+Q N ++ L + + + + + V TGTL I RH+A Sbjct: 558 VAKHIVTFFQQSHNREIIQRLQQIGIHWPENEPTSTNTQPLSGQTFVLTGTLTNITRHEA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + LGA VS +S+KT ++ G+ GSKLEKA+ LG+KI++E FL LL Sbjct: 618 KARLEALGAKVSGSVSKKTACVVAGEKAGSKLEKARTLGIKIIDENAFLALL 669 >gi|238799224|ref|ZP_04642672.1| DNA ligase [Yersinia mollaretii ATCC 43969] gi|238716921|gb|EEQ08789.1| DNA ligase [Yersinia mollaretii ATCC 43969] Length = 670 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 248/712 (34%), Positives = 406/712 (57%), Gaps = 47/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L ++ + P+L S + Sbjct: 1 MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R++ ++ + + F E K Sbjct: 58 PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRAE--PLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE+G+ V AA RGDG +GE+++A +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYEEGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F LNDE G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRRLAFFCYGVGLLDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV++ V+ ++++Y +++ R++L +DIDG+V KVD+ Sbjct: 236 PRSHIQRLMQFKAWGLPVSHRVKLCTGSEQVIAFYRQVEQDRASLGFDIDGVVIKVDDLD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++ +R DAQ F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDAQEILF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S + R A RCTGGL C+AQ+ E LKHFVSR A ++EG+G + Sbjct: 405 PEHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVEGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+F L K+ + G S NL +++K + + Sbjct: 459 IEQLVEKQ----YVENPADLFELTA------GKLTGLDRMGPKSAQNLIVALDKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + N D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRNMANLRAA----------DIDALKSVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F N +EAL K +S + + + S K +V TG+L + R +A++ Sbjct: 559 HVLNFLSEEHNQKVIEALEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL + Sbjct: 619 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLLGE 670 >gi|78223924|ref|YP_385671.1| NAD-dependent DNA ligase C4-type [Geobacter metallireducens GS-15] gi|123756373|sp|Q39S28|DNLJ_GEOMG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|78195179|gb|ABB32946.1| NAD-dependent DNA ligase C4-type [Geobacter metallireducens GS-15] Length = 671 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 250/710 (35%), Positives = 375/710 (52%), Gaps = 44/710 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + A + ++ L EI HD YY +P + D+EYDAL R + P+L P Sbjct: 1 MDRNAAERRIAELRAEIRRHDHLYYVLDRPELTDAEYDALYRELLKLEEEHPELV---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG +VTH IP LSLE + D+ +F R+ R I + E Sbjct: 58 DSPSRRVGGAPLEKFKQVTHRIPMLSLENAFTDGDIAEFDARVKRALALPAGEEIAYVCE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190 PK+DG + + YE G + RGDG GE+V+ ++ + +IP L N PE++EVRGE Sbjct: 118 PKLDGLAVELVYEYGTLTVGSTRGDGVVGENVTQNLKTVKSIPLRLEGENPPELLEVRGE 177 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249 V++ F LN + G P+ANPRNAA+G LR+L+ R L F + G+ Sbjct: 178 VFLPLAAFQRLNAQREEEGEPPFANPRNAAAGSLRQLDSRITARRPLTMFCYAPGEIRGA 237 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q E L +R G PV + RQ G+++YY EM R TLPY+IDG+V KVD F Sbjct: 238 DFGSQGEFLSALRQRGLPVTSLARQVTGVAGVLAYYREMTEKRDTLPYEIDGVVVKVDSF 297 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ++LGE++RSPRW ++ KF +QA T + DI +GRTG++TP A L PV + G ++ Sbjct: 298 PLQRELGEKSRSPRWAVAVKFPPRQAVTVIEDIVPSVGRTGVITPTANLRPVEVSGVTVS 357 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN + ++ +DIR+GD V+++RAG+VIP VV ++ +R + Sbjct: 358 RATLHNWEEMER-----------KDIRIGDTVVIERAGDVIPAVVKVLTEKRSGSERFLP 406 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C S VV+ + + GL+C AQ E + HF SR+A ++EGLG++ Sbjct: 407 IPAACPECGSEVVKIPDEVAVR-------CMGLSCPAQIRESIIHFASRNAMDMEGLGEK 459 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ + + AD++TL R G+ NL ++I + Sbjct: 460 YIEQLLR----LGLVGNVADLYTLTRDDFMKF------DRMGEKLAENLLNAIEASKKRE 509 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RFIF+LGIRHVG A+ LA + S N A+ L+ + +G +A Sbjct: 510 LSRFIFALGIRHVGEHTAKLLATAFGSIDNLARATEA----------ELLSIREIGPQVA 559 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 Q+I F+ N N + +++ EK V + K VFTGTL + R +AQ+ Sbjct: 560 QSITTFFHNEGNRETIRRMVEAGV-EPTVEEKKVGGKFTGKTFVFTGTLIRFSRSEAQKM 618 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V G + +S+KTD ++ GD GSKL+KA+QLGV ++ E++FL +L+ Sbjct: 619 VESEGGHAAGSVSKKTDYVVAGDEAGSKLDKARQLGVTVLAEDEFLQMLE 668 >gi|212218835|ref|YP_002305622.1| NAD-dependent DNA ligase [Coxiella burnetii CbuK_Q154] gi|254781301|sp|B6J878|DNLJ_COXB1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|212013097|gb|ACJ20477.1| NAD-dependent DNA ligase [Coxiella burnetii CbuK_Q154] Length = 673 Score = 585 bits (1507), Expect = e-164, Method: Composition-based stats. Identities = 246/709 (34%), Positives = 388/709 (54%), Gaps = 46/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + +K + L +EI+ H+ YY S+P I DS YD L + +P+ + P+ Sbjct: 7 PAKIQKRIERLREEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPE---TITPSS 63 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G E V H IP LSL+ +++ + LR F RI + K D + EPK Sbjct: 64 PTQRVGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRL--KLDKPFEYVCEPK 121 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG +++ YE G+ + AA RGDG++GE+V+ R I ++P L N PE++E+RGEV Sbjct: 122 MDGVALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVL 181 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + + F N E G K +ANPRNAASG LR+L+P R L F+ + +G Sbjct: 182 MPREGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDF 241 Query: 252 K-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 ++L+ + G PV + ++ G + YY + R +P+DIDG+V KV+ Sbjct: 242 PKNHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQ 301 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q +LG +R+PRW I++KF ++ T + I+ Q+GRTG +TPVARLEPV++ G ++N Sbjct: 302 VQAELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSN 361 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D + +D+RVGD V+V+RAG+VIP+VV I+ +R A+ Sbjct: 362 ATLHNFDEL-----------YRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKI 410 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C + V++ A RC GGL C AQ E +KHF SR A +IEGLG + Sbjct: 411 PSRCPVCHAEVIKPEGE------AVARCMGGLYCRAQLRESIKHFASRRALDIEGLGDKL 464 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F + + I+ I+ L++ + I + G+ S NL +I K + +L Sbjct: 465 VELFIQEK----LIKDITGIYQLKK------SAITALPRMGEKSAENLLTAIEKSKKTTL 514 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG AR+LA+++ + +L + +G ++A+ Sbjct: 515 PRFLYALGIRGVGDTTARTLARHFHELDLLMKA----------SIETLQEIRDIGPVVAE 564 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I F+ N + L+ + + + V SEI K V TG L+ + R +A+E + Sbjct: 565 NIHAFFHQKHNAELINKLI-HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEEKI 623 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + G ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+ Sbjct: 624 ERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 672 >gi|153207803|ref|ZP_01946403.1| DNA ligase, NAD-dependent [Coxiella burnetii 'MSU Goat Q177'] gi|120576355|gb|EAX32979.1| DNA ligase, NAD-dependent [Coxiella burnetii 'MSU Goat Q177'] Length = 670 Score = 584 bits (1506), Expect = e-164, Method: Composition-based stats. Identities = 246/709 (34%), Positives = 388/709 (54%), Gaps = 46/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + +K + L +EI+ H+ YY S+P I DS YD L + +P+ + P+ Sbjct: 4 PAKIQKRIERLREEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPE---TITPSS 60 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G E V H IP LSL+ +++ + LR F RI + K D + EPK Sbjct: 61 PTQRVGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRL--KLDKPFEYVCEPK 118 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG +++ YE G+ + AA RGDG++GE+V+ R I ++P L N PE++E+RGEV Sbjct: 119 MDGVALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVL 178 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + + F N E G K +ANPRNAASG LR+L+P R L F+ + +G Sbjct: 179 MPREGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDF 238 Query: 252 K-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 ++L+ + G PV + ++ G + YY + R +P+DIDG+V KV+ Sbjct: 239 PKNHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQ 298 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q +LG +R+PRW I++KF ++ T + I+ Q+GRTG +TPVARLEPV++ G ++N Sbjct: 299 VQAELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSN 358 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D + +D+RVGD V+V+RAG+VIP+VV I+ +R A+ Sbjct: 359 ATLHNFDEL-----------YRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKI 407 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C + V++ A RC GGL C AQ E +KHF SR A +IEGLG + Sbjct: 408 PSRCPVCHAEVIKPEGE------AVARCMGGLYCRAQLRESIKHFASRRALDIEGLGDKL 461 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F + + I+ I+ L++ + I + G+ S NL +I K + +L Sbjct: 462 VELFIQEK----LIKDITGIYQLKK------SAITALPRMGEKSAENLLTAIEKSKKTTL 511 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG AR+LA+++ + +L + +G ++A+ Sbjct: 512 PRFLYALGIRGVGDTTARTLARHFHELDLLMKA----------SIETLQEIRDIGPVVAE 561 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I F+ N + L+ + + + V SEI K V TG L+ + R +A+E + Sbjct: 562 NIHAFFHQKHNAELINKLI-HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEEKI 620 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + G ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+ Sbjct: 621 ERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 669 >gi|183599716|ref|ZP_02961209.1| hypothetical protein PROSTU_03219 [Providencia stuartii ATCC 25827] gi|188021975|gb|EDU60015.1| hypothetical protein PROSTU_03219 [Providencia stuartii ATCC 25827] Length = 671 Score = 584 bits (1506), Expect = e-164, Method: Composition-based stats. Identities = 246/709 (34%), Positives = 395/709 (55%), Gaps = 49/709 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ L +L+Q++ +H+ Y+ P I D+EYD L AI P+ S + P + Sbjct: 4 KQHLDTLKQQLRHHEYQYHVLDAPEIPDAEYDKLMEELKAIEAEHPEWITS---DSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + V H IP LSL+ +++ E F R+ KD F E K+DG Sbjct: 61 VGAAPLAAFDTVRHEIPMLSLDNVFDEESYLAFDKRVRDRL--KDQQEQTFCCELKLDGL 118 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKN 196 +++ YE G+ V AA RGDG GE++++ +R I IP L+ P +E+RGEV++ + Sbjct: 119 AVSLLYENGELVQAATRGDGTVGENITSNVRTIRAIPLRLTGENIPARVEIRGEVFMPQK 178 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-AKGQ 254 F ALN+E G K +ANPRNAA+G LR+L+P R L F+ +G+G Sbjct: 179 GFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGETLPDTH 238 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 YE L + + G PV+ V+ ++ +Y+E++ R TL +DIDG+V K+++ + Q++ Sbjct: 239 YERLMQFKKWGLPVSEYVQLRTGAQAVLDFYHEIEKARPTLGFDIDGVVIKINDIATQEE 298 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PRW + KF ++ T L D++ Q+GRTG +TPVARLEPV + G ++NATLH Sbjct: 299 LGFVSRAPRWATAFKFPAQEQMTLLKDVEFQVGRTGAITPVARLEPVQVAGVTVSNATLH 358 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L + +GD V+++RAG+VIP++V ++ +ER D++ FP+ C Sbjct: 359 NADEIERL-----------GVHIGDTVVIRRAGDVIPQIVSVVESERPADSREIVFPTHC 407 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + +D Sbjct: 408 PVCGSDVERVEGE------AVARCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQL 461 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E ++ PAD++ L S + + G S NL +++NK ++ +L RFI Sbjct: 462 VEKE----YVKNPADLYQL------SAGILTGLDRMGPKSAQNLVEALNKSKSTTLARFI 511 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LGIR VG A +LA +Y + + D SL V VG ++A+ +V Sbjct: 512 YALGIREVGEATAANLAAHYGTLEALMAA----------DEESLKTVQDVGHVVAKHVVN 561 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 F++ N ++AL+ + + + S K +V TG+L ++ R +A++ + Sbjct: 562 FFREEHNQTVIQALIDKANIHWPEAVAVDVSTIDSPFAGKTVVLTGSLSQLTRDEAKDKL 621 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA VS +S+KT ++I G+ GSKL KA +LG+ +++E + + LL+ Sbjct: 622 VALGAKVSGSVSKKTHLVIAGEAAGSKLAKANELGIPVIDENELIRLLE 670 >gi|165923886|ref|ZP_02219718.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 334] gi|165916671|gb|EDR35275.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 334] Length = 670 Score = 584 bits (1506), Expect = e-164, Method: Composition-based stats. Identities = 247/709 (34%), Positives = 388/709 (54%), Gaps = 46/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + +K + L QEI+ H+ YY S+P I DS YD L + +P+ + P+ Sbjct: 4 PAKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPE---TITPSS 60 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G E V H IP LSL+ +++ + LR F RI + K D + EPK Sbjct: 61 PTQRVGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRL--KLDKPFEYVCEPK 118 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG +++ YE G+ + AA RGDG++GE+V+ R I ++P L N PE++E+RGEV Sbjct: 119 MDGVALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVL 178 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + + F N E G K +ANPRNAASG LR+L+P R L F+ + +G Sbjct: 179 MPREGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDF 238 Query: 252 K-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 ++L+ + G PV + ++ G + YY + R +P+DIDG+V KV+ Sbjct: 239 PKNHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQ 298 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q +LG +R+PRW I++KF ++ T + I+ Q+GRTG +TPVARLEPV++ G ++N Sbjct: 299 VQAELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSN 358 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D + +D+RVGD V+V+RAG+VIP+VV I+ +R A+ Sbjct: 359 ATLHNFDEL-----------YRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKI 407 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C + V++ A RC GGL C AQ E +KHF SR A +IEGLG + Sbjct: 408 PSRCPVCHAEVIKPEGE------AVARCMGGLYCRAQLRESIKHFASRRALDIEGLGDKL 461 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F + + I+ I+ L++ + I + G+ S NL +I K + +L Sbjct: 462 VELFIQEK----LIKDITGIYQLKK------SAITALPRMGEKSAENLLTAIEKSKKTTL 511 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG AR+LA+++ + +L + +G ++A+ Sbjct: 512 PRFLYALGIRGVGDTTARTLARHFHELDLLMKA----------SIETLQEIRDIGPVVAE 561 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I F+ N + L+ + + + V SEI K V TG L+ + R +A+E + Sbjct: 562 NIHAFFHQKHNAELINKLI-HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEEKI 620 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + G ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+ Sbjct: 621 ERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 669 >gi|270262950|ref|ZP_06191221.1| DNA ligase, NAD-dependent [Serratia odorifera 4Rx13] gi|270043634|gb|EFA16727.1| DNA ligase, NAD-dependent [Serratia odorifera 4Rx13] Length = 673 Score = 584 bits (1505), Expect = e-164, Method: Composition-based stats. Identities = 239/713 (33%), Positives = 396/713 (55%), Gaps = 50/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P + D+EYD L + +A P+L + + Sbjct: 1 MESIIQQINQLRTSLRHHEYQYHVLDAPEVPDAEYDRLMNELRELENAHPELITA---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R+ K + F E K Sbjct: 58 PTQRVGAAPLAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQDRL--KSSEPLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE++++ +R I IP LS + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLSGDNIPRRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N+E K +ANPRNAA+G +R+L+P R L FF +G+G Sbjct: 176 MPQAGFEQMNEEARRKDGKIFANPRNAAAGSIRQLDPRITAKRPLTFFCYGVGLLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + ++ L + + G PV++ + ++++Y +++ R+ L +DIDG+V K+D+ Sbjct: 236 PRSHWQRLMQFKNWGLPVSDRAKCCTGSDEVLAFYRQVEQDRAQLGFDIDGVVVKIDDID 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG AR+PRW + KF ++ T + +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQETLGFVARAPRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIPKVV +I + R DA+ F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPKVVGVIEDRRPQDAREIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S V R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PLHCPVCGSDVERVEGE------AVTRCTGGLICAAQRKEALKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + E ++ PAD+F L S + + G S NL +++ K + + Sbjct: 459 IEQLVEKE----YVKNPADLFRL------SAGILTGLDRMGPKSAQNLVNALEKSKRTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ D +L +VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFGELPKLYAA----------DIDALKQVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRH----EKNVSSEIENKKLVFTGTLQKIQRHK 665 + F N ++ L+ E+ + + + S K +V TG+L ++ R + Sbjct: 559 HVRHFLDEELNQKVIDELIGAEIGINWPEVVVVAAEEIDSPFAGKTVVLTGSLSQLSRDE 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 AKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIAVIDEAEMIRLL 671 >gi|219850499|ref|YP_002464932.1| DNA ligase, NAD-dependent [Chloroflexus aggregans DSM 9485] gi|254781282|sp|B8GAC1|DNLJ_CHLAD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219544758|gb|ACL26496.1| DNA ligase, NAD-dependent [Chloroflexus aggregans DSM 9485] Length = 681 Score = 584 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 263/722 (36%), Positives = 385/722 (53%), Gaps = 55/722 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + ++ L I +D YY PI+ D+EYDAL A+ A P+L P Sbjct: 1 MNHIDVTQRINELRTLIRRYDYHYYVLDDPIVSDAEYDALMNELRALEAAHPELI---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++ G KV H P LSL + DL + R+ R + D ++ + +E Sbjct: 58 DSPTQRVSGTPASQFAKVQHPQPMLSLGNAFTTTDLLAWRDRVLRLLGQ--DTAVAYVVE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI------- 184 PKIDG + + Y G+FV A RGDG GEDV+A +R I +IP +L Sbjct: 116 PKIDGLAVALTYHDGQFVQGATRGDGEVGEDVTANLRTISSIPLLLHPPDGGHDRDVPTA 175 Query: 185 ----IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 IEVRGEVY+ DF ALND + A G K +ANPRNAA+G LR+ +P R L FF Sbjct: 176 LPSLIEVRGEVYMRTADFEALNDRLAAAGEKIFANPRNAAAGSLRQKDPAITAARPLRFF 235 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 +G+G + GQ++ L+ +R LGFPVN VR+ F +++Y + + R L Y+ Sbjct: 236 AYGVGPVEGVELTGQWQTLRYLRMLGFPVNQDVRRFTDFDEVLAYCEQWMARRDELTYEA 295 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V K+D+F+ Q++LG R PRW I+ KF ++A TRLL+I + +GRTG++TP A LE Sbjct: 296 DGMVIKIDDFAQQRELGVVGRDPRWAIAFKFPPREAITRLLNITVNVGRTGVVTPNAELE 355 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV IGG ++ NA+LHN DYI RDIR+GD V+VKRAG+VIP VV +V Sbjct: 356 PVQIGGVIVRNASLHNADYI-----------AQRDIRIGDYVIVKRAGDVIPYVVGPVVA 404 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R +P+ FP+ CP C S + R+ AA RC C AQ + RL+HF SR Sbjct: 405 RRDGSERPWQFPTHCPACGSPLEREPGE------AAWRCNNFGICPAQLVRRLEHFASRA 458 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +I GLG++Q + F + +R AD+F L+ + GFG + NL Sbjct: 459 ALDIVGLGERQAELFVQR----GLVRDVADLFYLKAEDFAG------LEGFGPKRIANLL 508 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 ++I+ R L+R I LGIR+VG+ A++L S L Sbjct: 509 NAIDAARQRPLDRLIVGLGIRYVGSVAAQALVNSLGSLDAIMNARQ----------EELE 558 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS-IGRHEKNVSSEIENKKLVFTGTL 658 ++P +G ++A +IV+F+ +P N +E L G + S + + V TGTL Sbjct: 559 QIPGIGPVVAASIVDFFAHPENRQLIEKLRAAGVQMNAGPQRERKSDVLAGQTFVLTGTL 618 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R +A + G V+ +S+KT+ ++ G N GSKL KAQQLG+ +++E L L+ Sbjct: 619 PSLTREQASALIIAHGGKVTDSVSKKTNYVVAGVNAGSKLAKAQQLGIPVLDEAALLALI 678 Query: 719 QQ 720 + Sbjct: 679 GE 680 >gi|295401729|ref|ZP_06811695.1| DNA ligase, NAD-dependent [Geobacillus thermoglucosidasius C56-YS93] gi|294976216|gb|EFG51828.1| DNA ligase, NAD-dependent [Geobacillus thermoglucosidasius C56-YS93] Length = 670 Score = 584 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 252/717 (35%), Positives = 391/717 (54%), Gaps = 53/717 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + A K + L + ++ ++ YY +P + DSEYD L + A+ +PDL Sbjct: 1 MERQAAIKRIEELRELLNQYNYEYYVLDRPSVPDSEYDRLMQELIALEEQYPDLK---TK 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG+ + KV H P LSL +N DLR F R+ ++ + + + E Sbjct: 58 DSPSQRVGGQALDAFQKVEHRTPMLSLANAFNEGDLRDFDRRVR----QEVGDDVAYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG +GED++ ++ I ++P L+ + +E RGE Sbjct: 114 LKIDGLAVSVRYEDGYFVQGATRGDGVTGEDITENLKTIRSLPLRLNEPV--TLEARGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F LN++ G + +ANPRNAA+G LR+L+P +R+L+ FV+GL E+ Sbjct: 172 YMPKASFERLNEQRRQRGEELFANPRNAAAGSLRQLDPKIAASRHLDLFVYGLANAEELG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L ++ LGF N R+ ++ + NE + R LPY+IDG+V KVD F+ Sbjct: 232 IASHSAALDYLQQLGFKTNPERRRCANMDEVMQFVNEWQEKRPQLPYEIDGIVIKVDSFA 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG A+SPRW I++KF ++ T+L+DI++ +GRTG++TP A LEPV + G + Sbjct: 292 QQEQLGATAKSPRWAIAYKFPAEEVVTKLIDIELNVGRTGVVTPTAILEPVRVAGTTVQR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED+I+ +DIR+GD V++K+AG++IP+VV+++ + R + PF Sbjct: 352 ATLHNEDFIR-----------EKDIRIGDSVIIKKAGDIIPEVVNVVPDRRTGEEVPFVM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S +VR A RC C AQ E L HFVSR A NIEGLG++ Sbjct: 401 PTHCPECASELVRIEGE------VALRCINPK-CPAQIREGLIHFVSRQAMNIEGLGEKV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ I ADI+ L + Q + G+ S TNL +I + SL Sbjct: 454 ISQLFRE----GLIHDVADIYRLTKDQLID------LERMGEKSATNLLHAIEASKQNSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ A+ LA+++ + L+ + +G+ +A Sbjct: 504 ERLLFGLGIRHVGAKAAKVLAEHFETMDRLQNATK----------EELMAIHEIGEKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-----VSSEIENKKLVFTGTLQKIQRHK 665 +IV ++ P + L + K V S K +V TG L+ + R++ Sbjct: 554 SIVTYFAKPEVKELLNELRAYGVNMEYKGPKTPKPGDVHSYFAGKTVVLTGKLESLSRNE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A+E + QLG V+ +S+ TD++I G + GSKL KAQQL ++I +E +FL ++Q Sbjct: 614 AKEKIEQLGGKVTGSVSKNTDLVIAGADAGSKLAKAQQLHIEIWDETRFLEEIEQSK 670 >gi|290476106|ref|YP_003469005.1| DNA ligase [Xenorhabdus bovienii SS-2004] gi|289175438|emb|CBJ82241.1| DNA ligase [Xenorhabdus bovienii SS-2004] Length = 672 Score = 584 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 247/714 (34%), Positives = 397/714 (55%), Gaps = 49/714 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L R + P+L + + Sbjct: 1 MESIIEKINKLRATLRHHEYLYHVMDAPEIPDAEYDRLLRELKVLEEQHPELITA---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H IP LSL+ +++ E F R+ KD + F E K Sbjct: 58 PTQRVGAAPLTAFGQVRHEIPMLSLDNVFDEESYLAFDKRVRDRL--KDSRDLVFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++ +R I IP L N P +E+RGEV+ Sbjct: 116 LDGLAVSLLYEDGELVQAATRGDGTTGENITVNVRTIHAIPLRLKGNNIPARVEIRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F LNDE G K +ANPRNAA+G LR+L+P R L F+ +G+G Sbjct: 176 MKQGGFEKLNDEARRKGNKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 YE L + + G PV++ V+ ++ +Y+ ++ R L +DIDG+V KVD Sbjct: 236 PASHYERLMQFKQWGLPVSDNVKLCQGTQQVIDFYHNIEQQRPILGFDIDGIVIKVDSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A++PRW + KFA ++ T + D++ Q+GRTG +TPVARL+PV + G +++N Sbjct: 296 LQETLGFVAKAPRWATAFKFAAQEQMTIVRDVEFQVGRTGAITPVARLKPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+++RAG+VIPKVV ++ ++R ++Q F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVVIRRAGDVIPKVVGVVQDKRPAESQEVIF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P +CP+C+S + R + RCTGGL C AQ+ E LKHFVSR A +++G+G++ Sbjct: 405 PEYCPVCRSDIERVEGE------SVARCTGGLFCGAQRKEALKHFVSRRAMDVDGMGEKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E ++ PAD+F L S K+ + G S N D++ K + + Sbjct: 459 IEQLVDKE----YVKTPADLFRL------SAGKLTGLERMGPKSAQNTIDALEKSKKTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFI+SLGIR VG A +L ++++ + D +LI V VG ++A Sbjct: 509 ARFIYSLGIREVGEATAANLVAHFVTLEKLRAA----------DTEALIAVQDVGGVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKA 666 +V F+ P N ++ L+ + E V + K +V TG+L ++ R +A Sbjct: 559 HVVNFFNEPHNQTVIDDLIDNIGIYWESVETLQSDTVGNSFAGKTVVLTGSLNRLSRDEA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ +T LGA V+ +S+KTD++I G+ GSKL KA +LG+++++EE+ L LL + Sbjct: 619 KDKLTALGAKVTGSVSKKTDLVIAGEAAGSKLAKATELGIEVIDEEEMLRLLGE 672 >gi|209364099|ref|YP_001424866.2| NAD-dependent DNA ligase [Coxiella burnetii Dugway 5J108-111] gi|207082032|gb|ABS76887.2| NAD-dependent DNA ligase [Coxiella burnetii Dugway 5J108-111] Length = 673 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 248/709 (34%), Positives = 390/709 (55%), Gaps = 46/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + +K + L QEI+ H+ YY S+P I DS YD L + +P+ + P+ Sbjct: 7 PAKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPE---TITPSS 63 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G E V H IP LSL+ +++ + LR F RI + K D + EPK Sbjct: 64 PTQRVGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRL--KLDKPFEYVCEPK 121 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG +++ YE G+ + AA RGDG++GE+V+ R I ++P L N PE++E+RGEV Sbjct: 122 MDGVALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVL 181 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + + F N E G K +ANPRNAASG LR+L+P R L F+ + +G Sbjct: 182 MPREGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDF 241 Query: 252 K-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 ++L+ + G PV + ++ G + YY + R +P+DIDG+V KV+ Sbjct: 242 PKNHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQ 301 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q +LG +R+PRW I++KF ++ T + I+ Q+GRTG++TPVARLEPV++ G ++N Sbjct: 302 VQAELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGVVTPVARLEPVSVSGVTVSN 361 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D + +D+RVGD V+V+RAG+VIP+VV I+ +R A+ Sbjct: 362 ATLHNFDEL-----------YRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKI 410 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C + V++ A RC GGL C AQ E +KHF SR A +IEGLG + Sbjct: 411 PSRCPVCHAEVIKPEGE------AVARCVGGLYCRAQLRESIKHFASRRALDIEGLGDKL 464 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F + + I+ I+ L++ + I + G+ S NL +I K + +L Sbjct: 465 VELFIQEK----LIKDITGIYQLKK------SAITALPRMGEKSAENLLTAIEKSKKTTL 514 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG IAR+LA+++ + +L + +G ++A+ Sbjct: 515 PRFLYALGIRGVGDTIARTLARHFHELDLLMKA----------SIETLQEIRDIGPVVAE 564 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I F+ N + L+ + + + V SEI K V TG L+ + R +A+E + Sbjct: 565 NIHAFFHQKHNAELINKLI-HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEEKI 623 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + G ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+ Sbjct: 624 ERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 672 >gi|312112463|ref|YP_003990779.1| DNA ligase, NAD-dependent [Geobacillus sp. Y4.1MC1] gi|311217564|gb|ADP76168.1| DNA ligase, NAD-dependent [Geobacillus sp. Y4.1MC1] Length = 670 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 252/717 (35%), Positives = 391/717 (54%), Gaps = 53/717 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + A K + L + ++ ++ YY +P + DSEYD L + A+ +PDL Sbjct: 1 MERQAAIKRIEELRELLNQYNYEYYVLDRPSVPDSEYDRLMQELIALEEQYPDLK---TK 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG+ + KV H P LSL +N DLR F R+ ++ + + + E Sbjct: 58 DSPSQRVGGQALDAFQKVEHRTPMLSLANAFNEGDLRDFDRRVR----QEVGDDVAYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG +GED++ ++ I ++P L+ + +E RGE Sbjct: 114 LKIDGLAVSVRYEDGYFVQGATRGDGVTGEDITENLKTIRSLPLRLNEPV--TLEARGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F LN++ G + +ANPRNAA+G LR+L+P +R+L+ FV+GL E+ Sbjct: 172 YMPKASFERLNEQRRQRGEELFANPRNAAAGSLRQLDPKIAASRHLDLFVYGLANAEELG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L ++ LGF N R+ ++ + NE + R LPY+IDG+V KVD F+ Sbjct: 232 IASHSAALDYLQQLGFKTNPERRRCANMDEVIQFVNEWQEKRPQLPYEIDGIVIKVDSFA 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG A+SPRW I++KF ++ T+L+DI++ +GRTG++TP A LEPV + G + Sbjct: 292 QQEQLGATAKSPRWAIAYKFPAEEVVTKLIDIELNVGRTGVVTPTAILEPVRVAGTTVQR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED+I+ +DIR+GD V++K+AG++IP+VV+++ + R + PF Sbjct: 352 ATLHNEDFIR-----------EKDIRIGDSVIIKKAGDIIPEVVNVVPDRRTGEEVPFVM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S +VR A RC C AQ E L HFVSR A NIEGLG++ Sbjct: 401 PTHCPECASELVRIEGE------VALRCINPK-CPAQIREGLIHFVSRQAMNIEGLGEKV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ I ADI+ L + Q + G+ S TNL +I + SL Sbjct: 454 ISQLFRE----GLIHDVADIYRLTKDQLID------LERMGEKSATNLLHAIEASKQNSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ A+ LA+++ + L+ + +G+ +A Sbjct: 504 ERLLFGLGIRHVGAKAAKVLAEHFETMDRLQNATK----------EELMAIHEIGEKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-----VSSEIENKKLVFTGTLQKIQRHK 665 +IV ++ P + L + K V S K +V TG L+ + R++ Sbjct: 554 SIVTYFAKPEVKELLNELRAYGVNMEYKGPKTPKPGDVHSYFAGKTVVLTGKLESLSRNE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A+E + QLG V+ +S+ TD++I G + GSKL KAQQL ++I +E +FL ++Q Sbjct: 614 AKEKIEQLGGKVTGSVSKNTDLVIAGADAGSKLAKAQQLHIEIWDETRFLEEIEQSK 670 >gi|39995996|ref|NP_951947.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens PCA] gi|81702997|sp|Q74ER9|DNLJ_GEOSL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|39982761|gb|AAR34220.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens PCA] gi|298505011|gb|ADI83734.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens KN400] Length = 670 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 249/711 (35%), Positives = 380/711 (53%), Gaps = 44/711 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + A +++L E+ H+ YY +P I D+EYD L R + FPDLA P Sbjct: 1 MDKQTAADRVAALRTELERHNRLYYAEDRPEITDAEYDLLFRELVDLETRFPDLAA---P 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG +VTH IP LSLE + ++ F R+ RF D I + E Sbjct: 58 DSPTQRVGGAPLDKFEQVTHRIPMLSLENAFTDVEIADFDDRVKRFLGLHGDVEIDYVCE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG + + YE+G + RGDG GE+V+ ++ + IP PE++EVRGE Sbjct: 118 PKMDGLAVELVYERGILTVGSTRGDGVVGENVTHNLKTVRGIPLRLRCEQPPELLEVRGE 177 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249 VY+ F LN + G P+ANPRNAA+G +R+L+ R L F + G+ Sbjct: 178 VYLPLAAFQRLNAQREEEGEPPFANPRNAAAGSIRQLDSRITARRPLAIFCYAPGEVRGA 237 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q E L ++ G PVN +R I++YY EM R +LPY+IDG+V KVD F Sbjct: 238 SFAAQTEFLDRIGEWGLPVNPLIRPVKGVAEILAYYREMTERRDSLPYEIDGVVVKVDSF 297 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LGE++RSPRW ++ KF +QA T + DI +GRTG++TP A L PV + G ++ Sbjct: 298 ALQRELGEKSRSPRWAVAVKFPPRQAVTVVEDIVPSVGRTGVITPTANLRPVEVSGVTVS 357 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN + ++ +DIR+GD V+++RAG+VIP VV ++ +R +P Sbjct: 358 RATLHNWEEMER-----------KDIRIGDTVVIERAGDVIPAVVKVLTEKRSGSERPLP 406 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C S VV+ + + GL+C AQ E + HF SRDA ++EGLG++ Sbjct: 407 IPAVCPECGSEVVKIPDEVAVR-------CMGLSCPAQIRESIIHFASRDAMDMEGLGEK 459 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ + ++ AD++TL + Q GD NL ++I + Sbjct: 460 YIEQLLR----LGLVKNVADLYTLTKDQFMQF------DRMGDKLAENLLNAIEASKQRE 509 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RFIF+LGIRHVG A+ LA + S +N + L+ + VG +A Sbjct: 510 LSRFIFALGIRHVGEHTAKLLAGAFGSIENLERATE----------EELLSIREVGPQVA 559 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++I+ F++N N + + K EK V K VFTG L + R +AQ+ Sbjct: 560 RSIITFFRNEGNRETIRRMFKAGVRPTAE-EKKVGGRFTGKTFVFTGALTRFSRPEAQKM 618 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 V + G + +S+KTD ++ G GSKL+KA+QLGV+++ E++FL +L++ Sbjct: 619 VEKEGGHAAGSVSKKTDYVVAGAEAGSKLDKARQLGVRVLTEDEFLAMLEE 669 >gi|206895761|ref|YP_002246502.1| DNA ligase, NAD-dependent [Coprothermobacter proteolyticus DSM 5265] gi|254781298|sp|B5Y6V5|DNLJ_COPPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|206738378|gb|ACI17456.1| DNA ligase, NAD-dependent [Coprothermobacter proteolyticus DSM 5265] Length = 666 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 219/714 (30%), Positives = 368/714 (51%), Gaps = 52/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E+A+K + L + I YH+ YY P I D EYD L R + FP+ P Sbjct: 1 MTREEAKKRIERLRELIEYHNYRYYVLDSPEISDEEYDKLYRELVTLEKQFPEFI---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G VTH +P LSL+ + ++++ F R+ + + + E Sbjct: 58 DSPTQRVGAPPAKEFATVTHEVPMLSLDNAFTEDEIKAFDQRVRSALNQ---QHVEYFCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190 K+DG +++ YE G FV + RG+G+ GEDV+A ++ I TIP L P ++E+RGE Sbjct: 115 HKLDGLAVSLLYENGLFVRGSTRGNGYVGEDVTANLKTIKTIPLRLKGENIPPVVEIRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 ++ DF ALN++ A+G+ +ANPRNAA+G +R+L+ + R L F +G G + Sbjct: 175 AFMMLRDFEALNEQRQALGQPLFANPRNAAAGSIRQLDSSITAQRKLYFMPYGFGLVQGM 234 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + Q L++ + GF +N R+A++ + + R LP+ DG+V KV+ Sbjct: 235 DFETQERFLKQCQEWGFRINEHNRKASSIEEALEFIRYWTEHRVELPFPADGVVIKVNNL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LG A +PR+ I++KF ++ T+L D+ Q+GRTGI+TPVA LEPV + GA ++ Sbjct: 295 RYWDILGTTAHAPRYAIAYKFPAEEKETKLKDVVFQVGRTGIITPVAMLEPVVLDGATVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN D ++ L D+R GD V +KRAG VIP+++ + +R + Sbjct: 355 RATLHNFDIVRQL-----------DVRKGDVVKLKRAGMVIPEIIGVAAEKRTGKEEQIE 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C D A+ + C AQ L H+ SRDA +I+GLG+ Sbjct: 404 PPTTCPVCGGPTEWDG---------AYLKCVNITCPAQLKGHLLHWASRDAMDIDGLGES 454 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ ++ AD++ L S + + S T LY++I + ++ Sbjct: 455 IIENLVD----MGLVKNIADLYKL------SVQDLLTLPRLAQRSATKLYENIQRSKDRP 504 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 R ++ LGI VG + A+ LA+++ S L + +G A Sbjct: 505 FFRVLYGLGIPRVGLKTAQMLAEHFGSINALLNAT----------MDELTSIEGIGTDTA 554 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 + I++ Q+P+ ++ L ++++ ++ VFTGTL + R A + Sbjct: 555 ETILKALQSPQVHELIDQLKTLGLKM---EQESIEGPLKGLTFVFTGTLTSMSRGDAAKL 611 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ-QYN 722 V LG V++ +S+ D ++VG++PGSKL+KAQ+LG+ I++EE FL +++ ++N Sbjct: 612 VQSLGGKVASSVSKNVDYVVVGEDPGSKLDKAQKLGLTIIDEEAFLKMVKREHN 665 >gi|190359248|sp|A9KCS0|DNLJ_COXBN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 670 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 248/709 (34%), Positives = 390/709 (55%), Gaps = 46/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + +K + L QEI+ H+ YY S+P I DS YD L + +P+ + P+ Sbjct: 4 PAKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPE---TITPSS 60 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G E V H IP LSL+ +++ + LR F RI + K D + EPK Sbjct: 61 PTQRVGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRL--KLDKPFEYVCEPK 118 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG +++ YE G+ + AA RGDG++GE+V+ R I ++P L N PE++E+RGEV Sbjct: 119 MDGVALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVL 178 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + + F N E G K +ANPRNAASG LR+L+P R L F+ + +G Sbjct: 179 MPREGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDF 238 Query: 252 K-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 ++L+ + G PV + ++ G + YY + R +P+DIDG+V KV+ Sbjct: 239 PKNHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQ 298 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q +LG +R+PRW I++KF ++ T + I+ Q+GRTG++TPVARLEPV++ G ++N Sbjct: 299 VQAELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGVVTPVARLEPVSVSGVTVSN 358 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D + +D+RVGD V+V+RAG+VIP+VV I+ +R A+ Sbjct: 359 ATLHNFDEL-----------YRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKI 407 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C + V++ A RC GGL C AQ E +KHF SR A +IEGLG + Sbjct: 408 PSRCPVCHAEVIKPEGE------AVARCVGGLYCRAQLRESIKHFASRRALDIEGLGDKL 461 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F + + I+ I+ L++ + I + G+ S NL +I K + +L Sbjct: 462 VELFIQEK----LIKDITGIYQLKK------SAITALPRMGEKSAENLLTAIEKSKKTTL 511 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG IAR+LA+++ + +L + +G ++A+ Sbjct: 512 PRFLYALGIRGVGDTIARTLARHFHELDLLMKA----------SIETLQEIRDIGPVVAE 561 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I F+ N + L+ + + + V SEI K V TG L+ + R +A+E + Sbjct: 562 NIHAFFHQKHNAELINKLI-HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEEKI 620 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + G ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+ Sbjct: 621 ERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 669 >gi|212212963|ref|YP_002303899.1| NAD-dependent DNA ligase [Coxiella burnetii CbuG_Q212] gi|254781302|sp|B6J1C6|DNLJ_COXB2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|212011373|gb|ACJ18754.1| NAD-dependent DNA ligase [Coxiella burnetii CbuG_Q212] Length = 677 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 247/709 (34%), Positives = 387/709 (54%), Gaps = 46/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + +K + L QEI+ H+ YY S+P I DS YD L + +P+ + P+ Sbjct: 7 PAKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPE---TITPSS 63 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G E V H IP LSL+ +++ + LR F RI + K D + EPK Sbjct: 64 PTQRVGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRL--KLDKPFEYVCEPK 121 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG +++ YE G+ + AA RGDG++GE+V+ R I ++P L N PE++E+RGEV Sbjct: 122 MDGVALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVL 181 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + + F N E G K +ANPRNAASG LR+L+P R L F+ + +G Sbjct: 182 MPREGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDF 241 Query: 252 K-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 ++L+ + G PV + ++ G + YY + R +P+DIDG+V KV+ Sbjct: 242 PKNHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQ 301 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q +LG +R+PRW I++KF ++ T + I+ Q+GRTG +TPVARLEPV++ G ++N Sbjct: 302 VQAELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSN 361 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D + +D+RVGD V+V+RAG+VIP+VV I+ +R A+ Sbjct: 362 ATLHNFDEL-----------YRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKI 410 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C + V++ A RC GGL C AQ E +KHF SR A +IEGLG + Sbjct: 411 PSRCPVCHAEVIKPEGE------AVARCVGGLYCRAQLRESIKHFASRRALDIEGLGDKL 464 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F + + I+ I+ L++ + I + G+ S NL +I K + +L Sbjct: 465 VELFIQEK----LIKDITGIYQLKK------SAITALPRMGEKSAENLLTAIEKSKKTTL 514 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG AR+LA+++ + +L + +G + A+ Sbjct: 515 PRFLYALGIRGVGDTTARTLARHFHELDLLMKA----------SIETLQEIRDIGPVAAE 564 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I F+ N + L+ + + + V SEI K V TG L+ + R +A+E + Sbjct: 565 NIHAFFHQKHNAELINKLI-HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEEKI 623 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + G ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+ Sbjct: 624 ERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 672 >gi|304392246|ref|ZP_07374188.1| DNA ligase, NAD-dependent [Ahrensia sp. R2A130] gi|303296475|gb|EFL90833.1| DNA ligase, NAD-dependent [Ahrensia sp. R2A130] Length = 716 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 309/718 (43%), Positives = 454/718 (63%), Gaps = 12/718 (1%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 R+++P L+ EQA +EL++L EI+ HD Y+ P I D YD L++R AI FP Sbjct: 7 REIVP-RKLTDEQAAEELAALASEIAEHDARYHNDDAPTISDGAYDTLRKRNTAIEERFP 65 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 DL R + P N +G + K+TH +P LSL+ ++ D+ F + RF K+ Sbjct: 66 DLVRE---DSPSNNVGSPVQSKFDKITHKVPMLSLDNAFDDGDVADFSASVRRFLNWKEG 122 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIP 182 + + FT EPKIDG + +RYE+G+ V AA RGDG GE+V+A R + IPR N+P Sbjct: 123 DPLTFTAEPKIDGLSLALRYERGELVSAATRGDGQVGENVTANARTVKDIPRKLSGGNVP 182 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVH 241 +I+E+RGEVYI K DF ALN EM A G++ Y NPRN A+G LR+L+ +R L FF + Sbjct: 183 DIVEIRGEVYIGKADFAALNVEMEAAGKQLYVNPRNTAAGSLRQLDSRITASRPLKFFAY 242 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G+ S++ A Q+ M+++M GF N + + +V++Y ++ R+ L YDIDG Sbjct: 243 AWGEMSKLPADTQFAMIEQMAAWGFSTNPLTARLESVEALVAHYRTIEESRAGLDYDIDG 302 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYKVD+ LQ +LG +R PRW I+HKF + A+T L +I+IQIGRTG L+PVARL+PV Sbjct: 303 VVYKVDDLGLQGRLGFASRVPRWAIAHKFPAELATTILREIEIQIGRTGALSPVARLDPV 362 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 +GG +++NATLHNEDYI G+ ++G+ +R GRD+R+GD V + RAG+VIPKV+D+ +++R Sbjct: 363 TVGGVVVSNATLHNEDYIAGVGSNGEPIREGRDLRIGDTVTIFRAGDVIPKVMDVDLSKR 422 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 PF FP+ CP C S VR ++ KTG+ + RCTGG C AQ +E +KHFVSR+AF Sbjct: 423 TAKE-PFEFPTVCPACGSPAVRPIDEKTGRADSVRRCTGGFICPAQAVEGIKHFVSRNAF 481 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +I+G G +Q + F + + PADIFTL+ R + S ++EN G+G S L+D+ Sbjct: 482 DIDGFGDKQAELFHE----LGMVMNPADIFTLRERDKRSLKRLENRDGYGKTSANKLFDA 537 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I+ RR I L RFIF+LGIRHVG A+ LA++Y I+ + W+ ++ + Sbjct: 538 IDDRRKIDLHRFIFALGIRHVGEGNAKLLARHYRDADTLLAAIDAAQDREGEAWVEMLDI 597 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 G+ A A+++F +P V+ALL EV+P+ + SS I K +VFTGTL++ Sbjct: 598 DGFGETAATALLDFMADPNRRGVVDALLTEVTPNP-VEQVASSSPIAGKTIVFTGTLEQT 656 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +A+ +LGA VS +S KTD+++ G+ GSKL+KA +LGV ++E+ +L L+ Sbjct: 657 TRSEAKAVAERLGAKVSGSVSAKTDLLVAGEKAGSKLKKAAELGVDTLDEQGWLDLVA 714 >gi|237732406|ref|ZP_04562887.1| NAD-dependent DNA ligase LigA [Citrobacter sp. 30_2] gi|226907945|gb|EEH93863.1| NAD-dependent DNA ligase LigA [Citrobacter sp. 30_2] Length = 671 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMCELRELEAQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSTDKLTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-IIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L + +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPTRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF- 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGVL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ +++YY++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKEWGLPVSDRVTLCDSPEEVLAYYHKVEEDRPTLGFDIDGVVIKVNSMV 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPDDTREIEF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCNSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+FTL K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFTLTA------GKLTGLDRMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA ++ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLEALEAA----------SIEELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL + + + + + S K +V TG+L + R A+ Sbjct: 559 HVFNFFAEESNREVIVQLLAQGIHWPAPVVINAEEIDSPFAGKTVVLTGSLSLMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +T+LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLTELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEAEMIRLL 669 >gi|127513305|ref|YP_001094502.1| DNA ligase, NAD-dependent [Shewanella loihica PV-4] gi|166216242|sp|A3QFJ5|DNLJ_SHELP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|126638600|gb|ABO24243.1| DNA ligase, NAD-dependent [Shewanella loihica PV-4] Length = 669 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 252/711 (35%), Positives = 397/711 (55%), Gaps = 50/711 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + E+ L E++ H+ YY P I D+EYD L RR + P+LA + + Sbjct: 1 MQAIQDEIKQLTDELNQHNYRYYVDDAPSIPDAEYDRLMRRLQELEAEHPELALA---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE +VTH P LSL+ +++ E+ F R+ K ++ F EPK Sbjct: 58 PTQRVGGEALSKFNQVTHLKPMLSLDNVFSEEEFNAFYKRV----GDKLPDTPAFCCEPK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG ++I Y G F AA RGDG GED++ +R I ++P L + P ++EVRGEV+ Sbjct: 114 LDGLAVSILYRDGVFERAATRGDGTVGEDITENVRTIKSVPLRLRGSGFPPLLEVRGEVF 173 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + K F A+ND+ A G K + NPRNAA+G LR+L+ +R L F+ + LG Sbjct: 174 MPKAAFEAVNDKARAKGEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEPETW 233 Query: 252 K---GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 +E L +++ G PV++ V+ +++YY ++ + RS L Y+IDG+V KV++ Sbjct: 234 PLAASHFEQLVQLKEWGCPVSSEVKVCADIPSVLAYYQDILTRRSELAYEIDGVVLKVND 293 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q+ LG A++PRW ++KF ++ T+L +D Q+GRTG +TPVARL+PV +GG + Sbjct: 294 IAQQQTLGFVAKAPRWATAYKFPAQEEITQLEGVDFQVGRTGAVTPVARLQPVFVGGVTV 353 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I L + +GD V+++RAG+VIP+VV ++ +R DAQ Sbjct: 354 SNATLHNADEIARL-----------GVMIGDSVIIRRAGDVIPQVVAVVPEKRPSDAQAI 402 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP+C S V R A RCTGGL C AQ+ E +KHF SR A +I+G+G Sbjct: 403 QFPPQCPVCGSDVERVEGE------AVARCTGGLVCEAQRKEAIKHFASRKALDIDGMGD 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E + PAD+F L + I + G S TNL +++ + Sbjct: 457 KVVEQLIDKE----LVASPADLFKLTA------SAITMLDRMGMKSATNLVNALEAAKQT 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + RF++SLGIR VG A +LA Y+ + ++ Q D + ++V VG I+ Sbjct: 507 TFARFLYSLGIREVGEATAANLANYFKTLEHLKQA----------DAETFMKVDDVGVIV 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQ 667 AQ +V F++ P N+ ++ LL+ E + ++ + V TGTL ++ R+ A+ Sbjct: 557 AQHLVHFFEQPHNLEVIDGLLQAGVHWPDIEEVAEEALSLKGQTWVLTGTLTQLNRNDAK 616 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK+++E + L +L Sbjct: 617 AKLQALGAKVAGSVSKNTDCLVAGEAAGSKLTKAQELGVKVIDEAELLAIL 667 >gi|311694426|gb|ADP97299.1| NAD-dependent DNA ligase [marine bacterium HP15] Length = 678 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 245/716 (34%), Positives = 385/716 (53%), Gaps = 47/716 (6%) Query: 12 LSIE--QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 +S + + L I H+ YY P + D+EYD L R + +P+LA Sbjct: 1 MSKATPDIIQRVEELRSAIDDHNYRYYVLDDPRVPDAEYDRLFRELQGLETDYPELA--- 57 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P ++G S +V H +P LSL+ ++ ++LR F R+ +D + + Sbjct: 58 SDTSPTRRVGSAAETSFEEVVHRLPMLSLDNAFSEDELRDFDRRVKDRLGITED--VEYV 115 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVR 188 EPK+DG +++ YE G AA RGDG+SGED++A IR IP++P L + P+++EVR Sbjct: 116 CEPKLDGLAVSLHYENGALTTAATRGDGYSGEDITANIRTIPSVPLKLRGDDVPDLVEVR 175 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVY+ K+ F LN + G K + NPRNAA+G LR+ T R L + + T Sbjct: 176 GEVYMPKDGFEQLNRRLAERGEKTFVNPRNAAAGSLRQKKSTVTARRPLEMCAYSVAVTD 235 Query: 248 E-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 E + Q+E L++++ GF +N +R+A + Y+E+ R LPY+IDG+V+KV Sbjct: 236 ESLLPDTQWEGLKRVQSWGFRINPEMRKARGAEECLEAYSELMDKRDGLPYEIDGIVFKV 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + QK LG +R+PRW I+ KF ++ T + D++ Q+GRTG +TPVARL+PV +GG Sbjct: 296 NRLDQQKALGFVSRAPRWAIAQKFPAQEELTVIEDVEFQVGRTGAVTPVARLKPVFVGGV 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++NATLHN D I+ L D+ +GD V ++RAG+VIP+VV ++ +R A+ Sbjct: 356 TVSNATLHNMDEIRRL-----------DVHIGDTVFIRRAGDVIPQVVKVVAEKRPSGAR 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C S V++ A RC+GGL C AQ+ E ++H+ SR A +IEGL Sbjct: 405 EVELPRQCPVCDSDVIQIEGE------AVARCSGGLFCPAQRKEAIRHYASRKALDIEGL 458 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + AD++ L + G+ S NL +I++ R Sbjct: 459 GDKWIDIMVDQ----GMVETVADLYRLTTDDLVK------LERMGEKSAANLVAAIDRAR 508 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 N L RF+++LGIR VG A++LA ++ + + A D SL VP VG Sbjct: 509 NPVLWRFLYALGIREVGEATAKALAGHFGTLEAIAAA----------DEESLQTVPDVGP 558 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I+A I F++ N ++AL + + ++ + V TGTL + R +A Sbjct: 559 IVAGHIRSFFEQTHNRETLDALREAGVRWQEEEVREGEKPLKGQTWVLTGTLSGMTRDEA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 +E + LGA V+ +S+KT ++ G+ GSKL KA+QL V +++E + LL+++ Sbjct: 619 KEKLESLGAKVAGSVSKKTACVVAGEAAGSKLAKAEQLEVPVLDEAGLVALLEEHG 674 >gi|163845839|ref|YP_001633883.1| DNA ligase [Chloroflexus aurantiacus J-10-fl] gi|222523550|ref|YP_002568020.1| DNA ligase, NAD-dependent [Chloroflexus sp. Y-400-fl] gi|190359243|sp|A9WCA1|DNLJ_CHLAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781286|sp|B9LHI6|DNLJ_CHLSY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|163667128|gb|ABY33494.1| DNA ligase, NAD-dependent [Chloroflexus aurantiacus J-10-fl] gi|222447429|gb|ACM51695.1| DNA ligase, NAD-dependent [Chloroflexus sp. Y-400-fl] Length = 709 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 266/720 (36%), Positives = 375/720 (52%), Gaps = 55/720 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S ++ L I +D YY PI+ D+EYDAL A+ A P+L P Sbjct: 1 MSHTTVADRINELRSLIRRYDYHYYVLDDPIVSDAEYDALMTELRALEAAHPELI---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++ G KV H P LSL + DL + R+ R D + + +E Sbjct: 58 DSPTQRVSGTPASQFAKVQHPQPMLSLGNAFTKADLLAWRDRVLRLLG--PDAIVAYVVE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-----------RVLSLN 180 PKIDG + + Y G+ V A RGDG GEDV+A +R I +IP L Sbjct: 116 PKIDGLAVALTYRDGRLVQGATRGDGEVGEDVTANLRTIGSIPLTLQATSTPQDDDLPTT 175 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +P IEVRGEVY+ DF LND + A G K +ANPRNAA+G LR+ +PT R L FF Sbjct: 176 LPTTIEVRGEVYMRTADFETLNDRLAAAGEKIFANPRNAAAGSLRQKDPTITAARPLRFF 235 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 +G+G I Q++ L+ +R LGFPVN VR+ F +++Y + R LPY+ Sbjct: 236 AYGVGVVEGISLSSQWQTLRYLRALGFPVNQDVRRFTDFAEVLAYCEAWMAKRDDLPYEA 295 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V K+D+F+ Q++LG R PRW I+ KF ++A TRLLDI + +GRTG++TP A LE Sbjct: 296 DGVVIKIDDFAQQRELGVVGRDPRWAIAFKFPAREAITRLLDITVNVGRTGVVTPNAELE 355 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV IGG + NA+LHN DYI RDIR+GD V+VKRAG+VIP VV ++ Sbjct: 356 PVQIGGVTVRNASLHNADYI-----------AQRDIRIGDYVIVKRAGDVIPYVVGPVIA 404 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R +P+ FP+ CP C S + R+ AA RC C AQ + R++HFVSR Sbjct: 405 RRDGSERPWQFPTHCPACGSPLEREEGE------AAWRCNNFSICPAQLVRRVEHFVSRS 458 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +I G+G++Q + F + IR ADIF L+ Q + GFG + NL Sbjct: 459 ALDIVGMGERQAELFVQR----GLIRDVADIFFLKADQL------AELEGFGPKRIANLL 508 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I+ R L+R + LGIR+VG A++L S L Sbjct: 509 AAIDAARQRPLDRLLVGLGIRYVGTVAAQTLVAALGSLDAIMAARQ----------EELE 558 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTL 658 ++P +G ++A +IV+F+ P N +E L G S + K V TGTL Sbjct: 559 QIPGIGPVVAASIVDFFSRPANRALIEKLRAAGVQMGGVSGPTRQSDTLAGKTFVLTGTL 618 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R +A + G V+ +S+KT ++ G N GSKL KA QLG+ +++E L L+ Sbjct: 619 PSLSREQASALIVAHGGKVTDSVSKKTSYVVAGANAGSKLAKALQLGIPVIDEAGLLALI 678 >gi|293395040|ref|ZP_06639327.1| DNA ligase [Serratia odorifera DSM 4582] gi|291422447|gb|EFE95689.1| DNA ligase [Serratia odorifera DSM 4582] Length = 673 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 245/710 (34%), Positives = 393/710 (55%), Gaps = 50/710 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K+++ L + +H+ Y+ P I D+EYD L R + A P+L + + P ++ Sbjct: 6 KKINQLRTSLRHHEYLYHVLDAPEIPDAEYDRLMRELRTLEEAHPELITA---DSPTQRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + +V H +P LSL+ +++ + F R+ K + F E K+DG Sbjct: 63 GAAPLTAFDQVRHEVPMLSLDNVFDEDSYLAFYKRVQDRL--KSSEPLTFCCELKLDGLA 120 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKND 197 +++ YE G+ V AA RGDG +GE+++A +R I IP L + P +EVRGEV++ + Sbjct: 121 VSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLIGDNIPRRVEVRGEVFMPQAG 180 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIFAKGQY 255 F +NDE K +ANPRNAA+G LR+L+P R L FF +G+G + Y Sbjct: 181 FEKMNDEARRKDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHY 240 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + L + + G PV++ VR ++++Y +++ RS L +DIDG+V K+D+ LQ++L Sbjct: 241 QRLMQFKAWGLPVSDRVRLCTGSDQVLAFYRQVEQDRSQLGFDIDGVVVKIDDIDLQERL 300 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G AR+PRW + KF ++ T + +++ Q+GRTG +TPVARLEPV + G ++NATLHN Sbjct: 301 GFVARAPRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVLVAGVTVSNATLHN 360 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+ L +R+GD V+V+RAG+VIP+VV ++ + R PDA+ FP CP Sbjct: 361 ADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVEDRRPPDAREVVFPQHCP 409 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + ++ Sbjct: 410 VCGSDVERVEGE------AVARCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIEQLV 463 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + E ++ PA +F L + + G S NL ++ K + + RF++ Sbjct: 464 EKE----YVKNPAGLFRLTA------GMLTGLDRMGPKSAQNLASALEKAKQTTFARFLY 513 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG A +LA ++ S D +L +VP VG+++A+ +V F Sbjct: 514 ALGIREVGESTAANLAAHFGSLDKLRAA----------DVEALKQVPDVGEVVAKHVVNF 563 Query: 616 YQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 + N ++ L+ + + + S K +V TG+L ++ R +A++ + Sbjct: 564 FAEALNQQVIDELVSDDIGIHWPAPVVVAVEEIDSPFAGKTVVLTGSLSQLSRDEAKDRL 623 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Q Sbjct: 624 TALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIAVIDEAEMIRLLGQ 673 >gi|146312580|ref|YP_001177654.1| NAD-dependent DNA ligase LigA [Enterobacter sp. 638] gi|190359255|sp|A4WD23|DNLJ_ENT38 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145319456|gb|ABP61603.1| DNA ligase, NAD-dependent [Enterobacter sp. 638] Length = 671 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 244/713 (34%), Positives = 395/713 (55%), Gaps = 48/713 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++L+ L + +H+ Y+ P + D+EYD L R + P+L P+ Sbjct: 1 MDSIEQQLTQLRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G S +V H +P LSL+ +++ E F R+ + D ++ + E K Sbjct: 58 PTQRVGAAPLASFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSAD--TLTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED++A +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGLLVRAATRGDGTTGEDITANVRTIRAIPLTLRGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF- 250 + + F +NDE G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQKGFEKINDEARRTGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGVL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV+N V+ ++ ++++Y++++ R +L +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKEWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPSLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L +R+GD+V+++RAG+VIP+VV+++ +ER D + F Sbjct: 356 ATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVESERPDDTREIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PAHCPVCGSDVERVEGE------VVTRCTGGLICGAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L S K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFRL------SAGKLTGLDRMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA ++ + + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLEQLEKAT----------IDDLQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL+E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGKLLEEGIHWPAPVVINVEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + +GA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + L L + Sbjct: 619 ARLVAIGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMLRLFGE 671 >gi|168238909|ref|ZP_02663967.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734182|ref|YP_002115493.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|254781415|sp|B4TQF8|DNLJ_SALSV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|194709684|gb|ACF88905.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288317|gb|EDY27698.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 671 Score = 582 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 243/712 (34%), Positives = 393/712 (55%), Gaps = 48/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLTKAQELGITVIDEAEMIRLLD 670 >gi|157371681|ref|YP_001479670.1| NAD-dependent DNA ligase LigA [Serratia proteamaculans 568] gi|190359284|sp|A8GHF2|DNLJ_SERP5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157323445|gb|ABV42542.1| DNA ligase, NAD-dependent [Serratia proteamaculans 568] Length = 673 Score = 582 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 239/713 (33%), Positives = 398/713 (55%), Gaps = 50/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P + D+EYD L A+ A P+L + + Sbjct: 1 MESIIQQINQLRTSLRHHEYQYHVLDAPEVPDAEYDRLMGELRALESAHPELITA---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R+ K + + F E K Sbjct: 58 PTQRVGAAPLAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQDRL--KSSDPLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE++++ +R I IP L+ + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLTGDNIPRRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N+E K +ANPRNAA+G +R+L+P R L FF +G+G Sbjct: 176 MPQAGFEQMNEEARRKDGKIFANPRNAAAGSIRQLDPRITAKRPLTFFCYGVGLLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + ++ L + + G PV++ ++ ++++Y +++ R+ L +DIDG+V K+D+ Sbjct: 236 PRSHWQRLMQFKDWGLPVSDRAKRCTGSDEVLAFYRQVEQDRTQLGFDIDGVVVKIDDID 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQETLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVLVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +I R DA+ F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVIAERRPADAREILF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S V R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PQHCPVCGSDVERVEGE------AVARCTGGLICAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + E ++ PAD+F L S + + G S NL +++ K + + Sbjct: 459 IEQLVEKE----YVKNPADLFRL------SAGILTGLDRMGPKSAQNLVNALEKSKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + D +L VP VG+I+A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFGTLDKLLAA----------DIEALKEVPEVGEIVAK 558 Query: 611 AIVEFYQNPRNICAVEALLK-EVSPSIGRH----EKNVSSEIENKKLVFTGTLQKIQRHK 665 F N ++ L+ E+ + + + S K +V TG+L ++ R + Sbjct: 559 HTRHFLDEELNQQVIQELVSDEIGINWPAPVVIVAEEIDSPFAGKTVVLTGSLSQLSRDE 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL Sbjct: 619 AKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIEVIDEAEMIRLL 671 >gi|329297490|ref|ZP_08254826.1| NAD-dependent DNA ligase LigA [Plautia stali symbiont] Length = 672 Score = 582 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 249/712 (34%), Positives = 399/712 (56%), Gaps = 49/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++++++L + +H+ Y+ P I D+EYD L R + A PDL P+ Sbjct: 1 MTSVQEQITALRTTLRHHEYLYHVMDTPEIPDAEYDRLMRELRELESAHPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ ++ F R+ + D+ + + E K Sbjct: 58 PTQRVGAAPLATFEQVRHEVPMLSLDNTFDEAGFLAFNKRMQDRLKSTDN--LTYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE G V AA RGDG +GE+++A +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGLLVRAATRGDGTTGENITANVRTIHAIPLRLHGDNIPARVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 ++++ F LN+E G K +ANPRNAA+G LR+L+P R L FF +G G Sbjct: 176 MTESGFEKLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEM 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 ++ LQ+ + G PV++ +R +T ++++Y +++ R +L +DIDG+V KVD + Sbjct: 236 PASHWQRLQQFKAWGLPVSDRIRLVHTADEVLAFYRQVEQDRPSLGFDIDGVVIKVDSQA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L +R+GD+V+++RAG+VIP+VV+++ +ER DA+ F Sbjct: 356 ATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVESERPADAREIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C S V A RCTGGL C AQ+ E LKHFVS A +++G+G + Sbjct: 405 PSHCPVCGSDVESVEGE------AVTRCTGGLICGAQRKEALKHFVSHRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E ++ PAD+F L K+ + G S N+ D++ K + +L Sbjct: 459 IDQLVEKE----YVKTPADLFRLTA------GKLTGLDRMGPKSAQNVVDALEKAKLTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + D +LI V VG ++A Sbjct: 509 PRFLYALGIREVGEATAANLANHFGELEKVMNA----------DLDALIAVQDVGKVVAA 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + F + N + L EV + + + S K +V TG+L ++ R A Sbjct: 559 HVRNFMEEESNREVIRQLTDEVGVHWPAVVVVKAEEIDSPFAGKTVVLTGSLSQMNRDDA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL Sbjct: 619 KARLTALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLL 670 >gi|206579402|ref|YP_002237241.1| DNA ligase, NAD-dependent [Klebsiella pneumoniae 342] gi|288934177|ref|YP_003438236.1| DNA ligase, NAD-dependent [Klebsiella variicola At-22] gi|254781350|sp|B5XVT4|DNLJ_KLEP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|206568460|gb|ACI10236.1| DNA ligase, NAD-dependent [Klebsiella pneumoniae 342] gi|288888906|gb|ADC57224.1| DNA ligase, NAD-dependent [Klebsiella variicola At-22] Length = 671 Score = 582 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 249/713 (34%), Positives = 399/713 (55%), Gaps = 48/713 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P + D+EYD L R + P+L P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELESQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + DD + + E K Sbjct: 58 PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDD--LTYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G + AA RGDG +GED+++ +R I TIP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLMQAATRGDGTTGEDITSNVRTIRTIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 LQ+ + G PV++ V +T +++YY +++ R L +DIDG+V KVD + Sbjct: 236 PASHSARLQQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEDRPHLGFDIDGVVIKVDSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +++GD+V+++RAG+VIP+VV+++++ER DA+ F Sbjct: 356 ATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCQSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L S K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFRL------SAGKLTGLDRMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + + Q L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAALAAHFGTLEALEQA----------SIEELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F+ N + LL E + + + S K +V TG+L ++ R A+ Sbjct: 559 HTFNFFAEESNRDVIAQLLAEGVHWPAPVVVKAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL + Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671 >gi|238785571|ref|ZP_04629551.1| DNA ligase [Yersinia bercovieri ATCC 43970] gi|238713506|gb|EEQ05538.1| DNA ligase [Yersinia bercovieri ATCC 43970] Length = 670 Score = 582 bits (1499), Expect = e-163, Method: Composition-based stats. Identities = 247/712 (34%), Positives = 403/712 (56%), Gaps = 47/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L ++ + P+L S + Sbjct: 1 MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLESQHPELITS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R++ ++ + + F E K Sbjct: 58 PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRTE--PLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F LNDE G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRRLAFFCYGVGLLDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV+N V+ ++++Y +++ R+ L +DIDG+V KVD+ Sbjct: 236 PRSHIQRLMQFKAWGLPVSNRVQLCTGSEQVIAFYRQVEQDRAGLGFDIDGVVIKVDDLD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++ +R DA+ +F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDAKEITF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S + R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PEHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+F L K+ + G S NL ++ + + + Sbjct: 459 IEQLVEKQ----YVENPADLFELTA------GKLTGLDRMGPKSAQNLIVALERAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + N D L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRNMANLRAA----------DIDELKSVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F N +EAL K +S + + + S K +V TG+L + R +A++ Sbjct: 559 HVLNFLGEEHNQRVIEALEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +T LGA VS +SRKTD++I G+ GSKL KAQ+LG+ +++E + + LL + Sbjct: 619 RLTALGAKVSGSVSRKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLLGE 670 >gi|16765747|ref|NP_461362.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167991721|ref|ZP_02572820.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197262860|ref|ZP_03162934.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|81522316|sp|Q8ZN89|DNLJ_SALTY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|16420966|gb|AAL21321.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197241115|gb|EDY23735.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205329843|gb|EDZ16607.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261247627|emb|CBG25454.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994529|gb|ACY89414.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158979|emb|CBW18492.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913414|dbj|BAJ37388.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222873|gb|EFX47944.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130756|gb|ADX18186.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989355|gb|AEF08338.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 671 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 242/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQELLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKSKTTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|238759468|ref|ZP_04620632.1| DNA ligase [Yersinia aldovae ATCC 35236] gi|238702365|gb|EEP94918.1| DNA ligase [Yersinia aldovae ATCC 35236] Length = 670 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 245/710 (34%), Positives = 398/710 (56%), Gaps = 47/710 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L ++ + P+L + + Sbjct: 1 MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELVTN---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R++ K + F E K Sbjct: 58 PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRL--KSVEPLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE+G+ V AA RGDG +GE+++A +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYEEGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + F LNDE G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPLAGFEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + L + + G PV++ V+ ++++Y +++ R+ L +DIDG+V KVD+ Sbjct: 236 PRSHIARLMQFKAWGLPVSDRVKLCTGSEQVIAFYRQVEQDRAGLGFDIDGVVIKVDDLD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++ +R D Q F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDTQEIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S + R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PEHCPVCGSDIERIEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+FTL K+ + G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLFTLTA------GKLTGLDRMGPKSAQNLIVALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + N D +L V VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRNLANLRAA----------DIDALKSVQDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F N +EAL + +S + + + S K +V TG+L + R +A++ Sbjct: 559 HVMNFLNEEHNQKVIEALEQVISWPEPQQIVVEEIDSPFAGKTVVLTGSLTMLSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLL 668 >gi|332290231|ref|YP_004421083.1| NAD-dependent DNA ligase LigA [Gallibacterium anatis UMN179] gi|330433127|gb|AEC18186.1| NAD-dependent DNA ligase LigA [Gallibacterium anatis UMN179] Length = 671 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 254/711 (35%), Positives = 392/711 (55%), Gaps = 45/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++ + L ++ YH+ Y+ P+I D+EYD + + + P+L + Sbjct: 1 MDDLQQHIEQLRNDLRYHEYQYHVLDNPVIPDAEYDRMMNQLKRLEAEHPELITD---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ ++ E+ FI RI D F EPK Sbjct: 58 PTQRVGAKPANGFQQIRHELPMLSLDNAFSDEEFFAFIRRIEDRLGVLPD-PFTFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVY 192 +DG ++I Y GK AA RGDG +GED++A IR I IP + P +EVRGEV+ Sbjct: 117 LDGLAVSILYVNGKLTQAATRGDGVTGEDITANIRTIRNIPLQLRTATPPARLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF-FVHGLGKTS-EIF 250 + + F LN+ + G K +ANPRNAA+G LR+L+P +G+G Sbjct: 177 MPHDGFERLNNHALEHGEKTFANPRNAAAGSLRQLDPQVTYHRPLMLNAYGIGIAEGVEL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y+ LQ ++ +G PVN +R N ++ +Y + RS+L YDIDG V KV+ Sbjct: 237 PNTHYDRLQWLKSIGIPVNKEIRLCNGTTEVLDFYRSIAEKRSSLGYDIDGTVLKVNSIP 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG +R+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 297 LQEQLGFISRAPRWAIAYKFPAQEELTILNDVEFQVGRTGAITPVAKLEPVYVAGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L DI +GD V+++RAG+VIP+++ ++ + R PDA+P F Sbjct: 357 ATLHNGDEIARL-----------DIAIGDTVIIRRAGDVIPQIIGVVHDRRPPDAKPIIF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S +VR A RCTGGL C AQ+ E LKHFVSR A +I+G+G + Sbjct: 406 PTRCPVCDSAIVRIDGE------AVARCTGGLVCEAQRKEGLKHFVSRKAMDIDGVGDKL 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + P D+FTL + + G+ S SI K + +L Sbjct: 460 IEQLVDRE----YLHTPVDLFTLSKETLMG------LERMGEKSAEKALASIEKAKKTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+F+LGIR VG AR+LA ++ + +N + L +V +G+++A Sbjct: 510 ARFLFALGIREVGEATARNLANHFHTLENIKNAT----------FEQLQQVQDIGEVVAN 559 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEY 669 I+ F+Q N VE L+++ + + + ++ K +V TGTL ++ R +A+ Sbjct: 560 RIILFWQEQHNRNVVEKLIEQGVTWDDVNATEIADNPLKEKTVVLTGTLTQMTRDQAKAL 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + QLG V+ +S KTD +I GDN GSKL+KA+ LGVK++ E+QFL L+ Q Sbjct: 620 LLQLGCKVAGSVSSKTDFVIAGDNAGSKLQKAESLGVKVLTEQQFLDLIPQ 670 >gi|290508381|ref|ZP_06547752.1| DNA ligase, NAD-dependent [Klebsiella sp. 1_1_55] gi|289777775|gb|EFD85772.1| DNA ligase, NAD-dependent [Klebsiella sp. 1_1_55] Length = 671 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 249/713 (34%), Positives = 399/713 (55%), Gaps = 48/713 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P + D+EYD L R + P+L P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELESQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + DD + + E K Sbjct: 58 PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDD--LTYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G + AA RGDG +GED+++ +R I TIP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLMQAATRGDGTTGEDITSNVRTIRTIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 LQ+ + G PV++ V +T +++YY +++ R L +DIDG+V KVD + Sbjct: 236 PASHSARLQQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEDRPHLGFDIDGVVIKVDSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQITFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +++GD+V+++RAG+VIP+VV+++++ER DA+ F Sbjct: 356 ATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCQSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L S K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFRL------SAGKLTGLDRMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + + Q L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAALAAHFGTLEALEQA----------SIEELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F+ N + LL E + + + S K +V TG+L ++ R A+ Sbjct: 559 HTFNFFAEESNRDVIAQLLAEGVHWPAPVVVKAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL + Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671 >gi|161612830|ref|YP_001586795.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|190359282|sp|A9N362|DNLJ_SALPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|161362194|gb|ABX65962.1| hypothetical protein SPAB_00529 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 671 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL CSAQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICSAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|168466836|ref|ZP_02700690.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195630762|gb|EDX49354.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 671 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------VKLTGLDRMGPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|167581473|ref|ZP_02374347.1| DNA ligase, NAD-dependent [Burkholderia thailandensis TXDOH] Length = 691 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 263/726 (36%), Positives = 395/726 (54%), Gaps = 53/726 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E S Q K + L E+ + YY +P + D+EYD L I PDL Sbjct: 5 PVEP-SAGQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFAELQQIEAEHPDLV- 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 P+ P ++GGE+ V H P LSL ++ +D+ F R+ K D Sbjct: 63 --TPDSPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDKPTDLVGT 120 Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR + +IP L Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGKR 180 Query: 182 PEII-EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 + +VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ +R L+FF Sbjct: 181 VPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240 Query: 240 VHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G+G +L LG PVN G++ +++ + + R +LPYD Sbjct: 241 AYGIGVLDGVEMPDTHSSLLDWYETLGLPVNRERAVVRGAAGLLEFFHSVGARRESLPYD 300 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARL Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV ++ Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVL 409 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R DA+ F P+ CP C SRV R + A RCTGGL C AQ+ + L HF R Sbjct: 410 DRRPADAREFVMPTECPECGSRVERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG++ +D + +R PAD+F L + + + F + S NL Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S L Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SIDEL 563 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFT 655 + V VG I+A++I +F+ N +E L + + + + K +V T Sbjct: 564 LEVNDVGPIVAESIHQFFAEAHNRTVIEQLRAKGKVTWPEGPPAPRAPQGVLAGKTVVLT 623 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683 Query: 716 FLLQQY 721 LL+ + Sbjct: 684 KLLEGH 689 >gi|261345310|ref|ZP_05972954.1| DNA ligase, NAD-dependent [Providencia rustigianii DSM 4541] gi|282566645|gb|EFB72180.1| DNA ligase, NAD-dependent [Providencia rustigianii DSM 4541] Length = 678 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 237/712 (33%), Positives = 393/712 (55%), Gaps = 49/712 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + ++++ SL+Q++ +H+ Y+ P I D EYD L + + P+L + + P Sbjct: 8 DALKQKIDSLKQQLRHHEYLYHVLDAPEIPDVEYDKLMQELKGLEAENPELITT---DSP 64 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G + V H +P LSL+ +++ E F R+ + + F E K+ Sbjct: 65 TQRVGAAPLTAFGTVRHEVPMLSLDNVFDEESYLAFDKRVKDRLN--NHTELTFCCELKL 122 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193 DG +++ YE G+ V AA RGDG GE+++ +R I IP L + P +E+RGEV++ Sbjct: 123 DGLAVSLLYENGELVQAATRGDGSVGENITVNVRTIKAIPLRLRGDNIPARVEIRGEVFM 182 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-A 251 + F A+N+E K +ANPRNAA+G LR+L+P R L F+ +G+G Sbjct: 183 PQKGFEAMNEEARRTDGKIFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGNTLP 242 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 YE L + + G PV+ V+ ++ +Y+ ++ IR TL +DIDG+V KV++ + Sbjct: 243 DTHYERLMQFKAWGLPVSEHVQLRVGCQQVLDFYHHVEKIRPTLGFDIDGVVIKVNDIAT 302 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW + KF ++ T L D++ Q+GRTG +TPVARLEPV + G +++NA Sbjct: 303 QEKLGFVSRAPRWATAFKFPAQEQLTLLKDVEFQVGRTGAITPVARLEPVQVAGVVVSNA 362 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I+ L +R+GD V+++RAG+VIP++V +++++R D++ +FP Sbjct: 363 TLHNADEIERL-----------GVRIGDTVVIRRAGDVIPQIVSVVMDKRPADSREITFP 411 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+C S + R A RCTGGL C AQ E LKHFVSR A +++G+G + + Sbjct: 412 TQCPVCHSDIERVEGE------AVARCTGGLTCGAQLKESLKHFVSRRAMDVDGMGDKII 465 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + +E ++ A ++ L S K+ + G S L D++ K + +L Sbjct: 466 EQLVDAE----YVKNAAQLYQL------SAGKLTGLERMGPKSAQKLIDALEKSKQTTLA 515 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RFI++LGIR VG A +LA +Y S D SL V +G+++A+ Sbjct: 516 RFIYALGIREVGEATAANLASHYASLDAVMAA----------DEESLKAVQDIGEVVAKH 565 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +V F+ N + LL + + + S K +V TG++ ++ R +A+ Sbjct: 566 VVNFFHEEHNRQVIHDLLTIANIHWPEVKVVNSDEIDSPFAGKTVVLTGSMSRLTRDEAK 625 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + LGA V+ +S+KTD++I G+ GSKL KA +LGVK+++E++ + LL Sbjct: 626 DQLVALGAKVAGSVSKKTDMVIAGEAAGSKLAKAIELGVKVIDEDELVRLLN 677 >gi|83720010|ref|YP_442546.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264] gi|257138755|ref|ZP_05587017.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264] gi|123753789|sp|Q2SX03|DNLJ_BURTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|83653835|gb|ABC37898.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264] Length = 691 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 262/726 (36%), Positives = 394/726 (54%), Gaps = 53/726 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E S Q K + L E+ + YY +P + D+EYD L I PDL Sbjct: 5 PVEP-SAGQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFAELQQIEAEHPDLV- 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 P+ P ++GGE+ V H P LSL ++ +D+ F R+ K D Sbjct: 63 --TPDSPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDKPTDLAGT 120 Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR + +IP L Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGKR 180 Query: 182 PEII-EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 + +VRGEV + + DF LN+ A G++ +ANPRNAA+G LR+L+ +R L+FF Sbjct: 181 VPRMLDVRGEVLMFRRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240 Query: 240 VHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G+G +L LG PVN G++ +++ + + R +LPYD Sbjct: 241 AYGIGVLDGVEMPDTHSSLLDWYETLGLPVNRERAVVRGAAGLLEFFHSVGARRESLPYD 300 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARL Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV + Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVF 409 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R DA+ F P+ CP C SRV R + A RCTGGL C AQ+ + L HF R Sbjct: 410 DRRPADAREFVMPTECPECGSRVERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG++ +D + +R PAD+F L + + + F + S NL Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S L Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SIDEL 563 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFT 655 + V VG I+A++I +F+ N +E L + + + + K +V T Sbjct: 564 LEVNDVGPIVAESIHQFFAEAHNRTVIEQLRAKGKVTWPEGPPAPRAPQGVLAGKTVVLT 623 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683 Query: 716 FLLQQY 721 LL+ + Sbjct: 684 KLLEGH 689 >gi|62180995|ref|YP_217412.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|75481868|sp|Q57LT1|DNLJ_SALCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|62128628|gb|AAX66331.1| DNA ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715476|gb|EFZ07047.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 671 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAEGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIVQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|161502427|ref|YP_001569539.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|190359281|sp|A9MIG0|DNLJ_SALAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|160863774|gb|ABX20397.1| hypothetical protein SARI_00461 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 671 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 246/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R A+ PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRALEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVRAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRSGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++++Y+ ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLAFYHNVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIDRL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATIF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAA----------SIDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNREVIGQLLAEGVHWPAPVVINAQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMLRLL 669 >gi|200388789|ref|ZP_03215401.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199605887|gb|EDZ04432.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 671 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 243/712 (34%), Positives = 392/712 (55%), Gaps = 48/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------VKLTGLDRMGPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLLD 670 >gi|300717845|ref|YP_003742648.1| DNA ligase [Erwinia billingiae Eb661] gi|299063681|emb|CAX60801.1| DNA ligase [Erwinia billingiae Eb661] Length = 672 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 253/714 (35%), Positives = 396/714 (55%), Gaps = 49/714 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E + ++++L+ + +H+ Y+ P + D+EYD L R + A P+L + + Sbjct: 1 MESVQDKITALQTTLRHHEYQYHVMDDPEVPDAEYDRLMRELRELEQAHPELVTA---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ ++ E F R+ K+ + I F E K Sbjct: 58 PTQRVGAAPLGAFEQVRHEVPMLSLDNAFDEESYLAFYKRVQDRL--KNTDDITFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE G V AA RGDG +GE+++A +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGLLVRAATRGDGTTGENITANVRTIRAIPLRLHGENIPSRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + F ALN+E G K +ANPRNAA+G LR+L+P R L FF +G G Sbjct: 176 MPLAGFEALNNEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEM 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + LQ+ + G PV++ ++ +T ++++Y +++ R TL +DIDG+V KVD Sbjct: 236 PRSHMARLQQFKAWGLPVSDRIKLCHTAEEVLAFYRQVEQDRPTLGFDIDGVVIKVDSQD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GDRV+++RAG+VIP+VV +I +ER DA+ F Sbjct: 356 ATLHNADEIERL-----------GLRIGDRVIIRRAGDVIPQVVGVIESERPDDAREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R RCTGGL C AQ+ LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------VVARCTGGLICGAQRKGALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +S+ K + +L Sbjct: 459 IDQLVEKE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNSLEKAKTTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF++SLGI VG A +LA ++ S + D +LI V VG ++A Sbjct: 509 ARFLYSLGISEVGEATAANLAAHFGSLEKIMAA----------DLDALIAVQDVGTVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKA 666 + F N + L++E + E + S K +V TG+L + R +A Sbjct: 559 HLRNFMDEESNREVIRQLVEEAGINWPAVEVVNAAEIDSPFAGKTVVLTGSLTILSRDEA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL + Sbjct: 619 KDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMIRLLGE 672 >gi|197247622|ref|YP_002147380.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|254781407|sp|B5F0F5|DNLJ_SALA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|197211325|gb|ACH48722.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 671 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 243/712 (34%), Positives = 392/712 (55%), Gaps = 48/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLLD 670 >gi|186476101|ref|YP_001857571.1| DNA ligase, NAD-dependent [Burkholderia phymatum STM815] gi|254781277|sp|B2JID1|DNLJ_BURP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|184192560|gb|ACC70525.1| DNA ligase, NAD-dependent [Burkholderia phymatum STM815] Length = 683 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 256/712 (35%), Positives = 387/712 (54%), Gaps = 49/712 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + L E+ + YY +P + D+EYD L + I PDL P+ P + Sbjct: 15 AERALWLRDELERANYAYYVLDQPDLPDAEYDRLFKELQQIESEHPDLI---TPDSPTQR 71 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ V H +P LSL ++ ED+ F R+ + + E K DG Sbjct: 72 VGGEVASGFRPVVHDMPMLSLNNGFSDEDIAAFDKRVSDTLH---HTPVDYACELKFDGL 128 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKN 196 I++RY G+F AA RGDG +GEDV+ +R I +IP L P++++VRGEV + + Sbjct: 129 AISLRYVDGQFTQAATRGDGATGEDVTENVRTIRSIPLKLKGKRVPKLVDVRGEVLMFRR 188 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIFAKGQ 254 DF LN G++ +ANPRNAA+G LR+L+P R L+FF +G+G Sbjct: 189 DFDKLNQRQRDAGQREFANPRNAAAGSLRQLDPKMTAQRPLSFFAYGIGVLDGIEMPGTH 248 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E+L +G PVN+ G++ +++++ R LPYDIDG+VYKV+ Q Sbjct: 249 SELLDWYHEMGLPVNSERAVVQGAEGVLGFFHKVGEKRDKLPYDIDGVVYKVNRRDEQDA 308 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATLH Sbjct: 309 LGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARLEPVFVGGATVTNATLH 368 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED ++ +DIR+GD V+V+RAG+VIP+VV ++ R PDA+ F P+ C Sbjct: 369 NEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGALLERRPPDAREFVMPTQC 417 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S + R + A RC+GGL C AQ+ + L HF R A +I+GLG++ +D Sbjct: 418 PVCGSAIERLPDE------AIARCSGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQL 471 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + +R PAD+F L + + F + S NL DS+ K ++ +L RFI Sbjct: 472 VE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLIDSLEKAKHTTLARFI 521 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LGIRHVG A+ LA+++ S L+ V VG I+A+AI + Sbjct: 522 YALGIRHVGESTAKDLARHFGSLDPIMSAT----------VEELLEVNDVGPIVAEAIHQ 571 Query: 615 FYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ N +E L + K + K +V TGTL + R +A+E + Sbjct: 572 FFAEEHNRTVIEQLRAPGKVTWAEGPPAPKAPQGVLAGKTVVLTGTLPNMGRDEAKELLE 631 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ LL+ T Sbjct: 632 AAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMRKLLEGQTT 683 >gi|317491275|ref|ZP_07949711.1| DNA ligase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920822|gb|EFV42145.1| DNA ligase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 678 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 243/702 (34%), Positives = 384/702 (54%), Gaps = 50/702 (7%) Query: 25 EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84 + +H+ Y+ P I D+EYD L R A+ P+L P+ P ++G Sbjct: 17 RTALRHHEYQYHVLDAPEIPDAEYDRLMRELRALEEQHPELI---TPDSPTQRVGAAPLS 73 Query: 85 SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144 + +V H +P LSL+ +++ E F R++ K + F E K+DG +++ YE Sbjct: 74 AFSQVRHEVPMLSLDNVFDDESYLAFDKRVHDRL--KTAEPLTFCCELKLDGLAVSLLYE 131 Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDFLALND 203 G V A RGDG +GED++A ++ I IP L + P +EVRGEV++ F A+N+ Sbjct: 132 DGVLVRGATRGDGTTGEDITANVKTIRAIPLRLQGDNIPRRVEVRGEVFMPLAGFEAMNE 191 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSEIFAKGQYEMLQKM 261 E K +ANPRNAA+G LR+L+P R L FF +G+G Y LQ+ Sbjct: 192 EARRKDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLMDGGELPASHYARLQQF 251 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 + G PV++ V++ ++ +Y +++ R TL +DIDG+V KVD +Q+QLG AR+ Sbjct: 252 KAWGLPVSDRVKRCTGSDEVLKFYRQVEQERPTLGFDIDGVVIKVDSIEIQEQLGFVARA 311 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW + KF ++ T + ++ Q+GRTG +TPVARLEPV + G +++NATLHN D I Sbjct: 312 PRWATAFKFPAQEQMTVVNGVEFQVGRTGAITPVARLEPVLVAGVIVSNATLHNADEIDR 371 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 L +R+GD V+V+RAG+VIP+VV ++ +R +AQ FP CP+C S V Sbjct: 372 L-----------GLRIGDTVIVRRAGDVIPQVVGVVEAQRPENAQEIVFPQHCPVCGSDV 420 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 R A RCTGGL C AQ+ E LKHFVSR A +++G+G + ++ + E Sbjct: 421 ERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIEQLVEKE--- 471 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 ++ PAD++ L + + G S TNL +++ K + +L RF+++LGIR Sbjct: 472 -YVKTPADLYRLTA------GILTGLDRMGPKSATNLVNALAKSKETTLARFLYALGIRE 524 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 VG A +LA ++ S + + D +L V VG+++A+ + F N Sbjct: 525 VGEATAANLAAHFGSLEALREA----------DVEALKSVQDVGEVVAKHVRHFLGEEHN 574 Query: 622 ICAVEALLK-EVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 ++ L+ E+ + + + S K +V TG+L + R +A++ + LGA Sbjct: 575 QKVIDELISDEIGIHWPAPQVIVAEEIDSPFAGKTVVLTGSLSLMPRDEAKDRLAALGAK 634 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 635 VSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDEAEMIRLL 676 >gi|204929538|ref|ZP_03220612.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321257|gb|EDZ06457.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 671 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLTKAQELGITVIDEAEMIRLL 669 >gi|168817829|ref|ZP_02829829.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205345161|gb|EDZ31925.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320086917|emb|CBY96687.1| DNA ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 671 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 244/712 (34%), Positives = 394/712 (55%), Gaps = 48/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLNQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 E + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ERLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLLD 670 >gi|167619582|ref|ZP_02388213.1| DNA ligase, NAD-dependent [Burkholderia thailandensis Bt4] Length = 691 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 262/726 (36%), Positives = 395/726 (54%), Gaps = 53/726 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E S Q K + L E+ + YY +P + D+EYD L I PDL Sbjct: 5 PVEP-SAGQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFAELQQIEAEHPDLV- 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 P+ P ++GGE+ V H P LSL ++ +D+ F R+ K D Sbjct: 63 --TPDSPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDKPTDLAGT 120 Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR + +IP L Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGKR 180 Query: 182 PEII-EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 + +VRGEV + + DF LN+ A G++ +ANPRNAA+G LR+L+ +R L+FF Sbjct: 181 VPRMLDVRGEVLMFRRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240 Query: 240 VHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G+G +L LG PVN G++ +++ + + R +LPYD Sbjct: 241 AYGIGVLDGVEMPDTHSSLLDWYETLGLPVNRERAVVRGAAGLLEFFHSVGARRESLPYD 300 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARL Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV ++ Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVL 409 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R DA+ F P+ CP C SRV R + A RCTGGL C AQ+ + L HF R Sbjct: 410 DRRPADAREFVMPTECPECGSRVERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG++ +D + +R PAD+F L + + + F + S NL Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S L Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SIDEL 563 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFT 655 + V VG I+A++I +F+ N +E L + + + + K +V T Sbjct: 564 LEVNDVGPIVAESIHQFFAEAHNRTVIEQLRAKGKVTWPEGPPAPRAPQGVLAGKTVVLT 623 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683 Query: 716 FLLQQY 721 LL+ + Sbjct: 684 KLLEGH 689 >gi|157144662|ref|YP_001451981.1| NAD-dependent DNA ligase LigA [Citrobacter koseri ATCC BAA-895] gi|166215574|sp|A8ADI2|DNLJ_CITK8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157081867|gb|ABV11545.1| hypothetical protein CKO_00382 [Citrobacter koseri ATCC BAA-895] Length = 671 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 246/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQHPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PSQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSGDKLTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G + AA RGDG +GED+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLISAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPEAVLDFYHKVEEDRPTLGFDIDGVVIKVNSMA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPVEF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + S K +V TG+L + R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGIHWPAPIVVNADEIDSPFAGKTIVLTGSLSLMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + L LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMLRLL 669 >gi|153838362|ref|ZP_01991029.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus AQ3810] gi|149748221|gb|EDM59080.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus AQ3810] Length = 670 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 251/713 (35%), Positives = 393/713 (55%), Gaps = 48/713 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E + L L++ + YH YY P I D+EYD L R I PDL Sbjct: 1 MS-ESVHQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTV--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG+ +VTH +P LSL+ ++ +L F R + + E Sbjct: 57 DSPSQRVGGKPLSEFSQVTHEVPMLSLDNAFDDSELDSFHKRAQDRIGGESIKQ--YCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 PK+DG +++ YE G V AA RGDG +GE+++ +R I IP L + P +EVRGE Sbjct: 115 PKLDGLAVSLLYENGILVQAATRGDGTTGENITENVRTINAIPLKLRGDDWPARLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249 V++ K F LN+ G K + NPRNAA+G LR+L+ +R L+F+ + +G Sbjct: 175 VFMPKAGFEKLNELARQKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGA 234 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 A YE +++ G P+ ++ ++ + +YY ++ R LPY+IDG+V K+D+ Sbjct: 235 DLAASHYERFLQIKSWGLPMCPETKRVDSLADVKTYYQDILQRRDALPYEIDGVVIKIDD 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 ++Q++LG AR+PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEPV +GG + Sbjct: 295 IAVQERLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I+ L +++GD+V+++RAG+VIP+VV +I R A+ Sbjct: 355 SNATLHNADEIERLQ-----------VKIGDQVVIRRAGDVIPQVVSVIKERRPETARDI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CP+C S V R A RCTGGL C AQ+ + LKHFVSR A +++GLG Sbjct: 404 IFPTQCPVCGSHVERIEGE------AVTRCTGGLVCQAQRKQALKHFVSRKALDVDGLGD 457 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E + PAD+F L S + + G S N+ +++ K + Sbjct: 458 KVIEQLVDRE----MVETPADLFKL------SAGVLTVLERMGPKSAQNIVNALEKSKLT 507 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF++SLGIR VG A +LA+++ S + LI V +G ++ Sbjct: 508 TLPRFLYSLGIREVGEATAANLAQHFKSLEAIQAATE----------EQLIAVQDIGVVV 557 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A+ I F++ +N V+ LL + P + E+ +E K +V TGTL ++ R +A Sbjct: 558 AKHITTFFEEEKNQAVVQDLLVQGIHWPEVSAPEQGAELPLEGKTVVLTGTLSQLGRTEA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + LGA V+ +S+KTDI+ G+N GSKL KAQ+LG++I E+ L L+ Sbjct: 618 KEALQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELIN 670 >gi|215918993|ref|NP_819574.2| NAD-dependent DNA ligase [Coxiella burnetii RSA 493] gi|218512010|sp|Q83DZ6|DNLJ_COXBU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|206583878|gb|AAO90088.2| NAD-dependent DNA ligase [Coxiella burnetii RSA 493] Length = 673 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 247/709 (34%), Positives = 388/709 (54%), Gaps = 46/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + +K + L QEI+ H+ YY S+P I DS YD L + + +P+ + P+ Sbjct: 7 PAKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELEKLEKKYPE---TITPSS 63 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G E V H IP LSL+ +++ + LR F RI + K D + EPK Sbjct: 64 PTQRVGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRL--KLDKPFEYVCEPK 121 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG +++ YE G+ + AA RGDG++GE+V+ R I ++P L N PE++E+RGEV Sbjct: 122 MDGVALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVL 181 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + + F N E G K +ANPRNAASG LR+L+P R L F+ + +G Sbjct: 182 MPREGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDF 241 Query: 252 K-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 ++L+ + G PV + ++ G + YY + R +P+DIDG+V KV+ Sbjct: 242 PKNHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQ 301 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q +LG +R+PRW I++KF ++ T + I+ Q+GRTG +TPVARLEPV++ G ++N Sbjct: 302 VQAELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSN 361 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D + +D+RVGD V+V+RAG+VIP+VV I+ +R A+ Sbjct: 362 ATLHNFDEL-----------YRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKI 410 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C + V++ A RC GGL C AQ E +KHF SR A +IEGLG + Sbjct: 411 PSRCPVCHAEVIKPEGE------AVARCVGGLYCRAQLRESIKHFASRRALDIEGLGDKL 464 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F + + I+ I+ L++ + I + G+ S NL +I K + +L Sbjct: 465 VELFIQEK----LIKDITGIYQLKK------SAITALPRMGEKSAENLLTAIEKSKKTTL 514 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG AR+LA+++ + +L + +G + A+ Sbjct: 515 PRFLYALGIRGVGDTTARTLARHFHELDLLMKA----------SIETLQEIRDIGPVAAE 564 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I F+ N + L+ + + + V SEI K V TG L+ + R +A+E + Sbjct: 565 NIHAFFHQKNNAELINKLI-HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEEKI 623 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + G ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+ Sbjct: 624 ERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 672 >gi|212710592|ref|ZP_03318720.1| hypothetical protein PROVALCAL_01658 [Providencia alcalifaciens DSM 30120] gi|212686673|gb|EEB46201.1| hypothetical protein PROVALCAL_01658 [Providencia alcalifaciens DSM 30120] Length = 678 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 239/714 (33%), Positives = 392/714 (54%), Gaps = 49/714 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + + +++ +L+Q++ +H+ Y+ P I D EYD L + A+ P+L + + Sbjct: 6 NPDALTQKIDALKQQLRHHEYLYHVMDAPEIPDVEYDKLMQELKALEAEHPELITT---D 62 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++G + V H IP LSL+ +++ E F R+ + + F E Sbjct: 63 SPTQRVGAAPLAAFDTVRHEIPMLSLDNVFDEESYLAFDKRVKDRL--HNHTELTFCCEL 120 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191 K+DG +++ YE G+ V AA RGDG GE+++A +R I IP L + P +E+RGEV Sbjct: 121 KLDGLAVSLLYENGELVQAATRGDGTVGENITANVRTIKAIPLRLRGDNIPARVEIRGEV 180 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 ++ + F A+N+E K +ANPRNAA+G LR+L+P R L F+ +G+G Sbjct: 181 FMPQKGFEAMNEEARKTDGKIFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGKT 240 Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 YE L + + G PV+ V+ ++ +Y+ ++ IR TL +DIDG+V KV++ Sbjct: 241 LPDTHYERLMQFKAWGLPVSEHVQLRVGCQQVLDFYHHVEKIRPTLGFDIDGVVIKVNDI 300 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 ++Q++LG +R+PRW + KF ++ T L D++ Q+GRTG +TPVARLEPV + G +++ Sbjct: 301 AIQEELGFVSRAPRWATAFKFPAQEQITLLKDVEFQVGRTGAITPVARLEPVQVAGVVVS 360 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I L +R+GD V+++RAG+VIP++V +++++R D++ Sbjct: 361 NATLHNADEIDRL-----------GVRIGDTVVIRRAGDVIPQIVSVVMDKRPADSREII 409 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S + R A RCTGGL C AQ E LKHFVSR A +++G+G + Sbjct: 410 FPTHCPVCNSDIERVEGE------AVARCTGGLTCGAQLKESLKHFVSRRAMDVDGMGDK 463 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ +E + A ++ L S K+ + G S L D++ K + + Sbjct: 464 IIEQLVDAE----YVANAAQLYQL------SAGKLTGLERMGPKSAQKLIDALEKSKQTT 513 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RFI++LGIR VG A +LA +Y S D SL V +G+++A Sbjct: 514 LARFIYALGIREVGEATAANLAAHYASLDAVMAA----------DEDSLKTVQDIGEVVA 563 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHK 665 + +V F++ N + LL + + + S K +V TG++ + R Sbjct: 564 KHVVHFFREEHNRQVIHDLLTIANIHWPEVKVINSAEIDSPFAGKTVVLTGSMSTLSRDD 623 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A++ + LGA V+ +S+KTD++I G+ GSKL KA +LG+K+++EE+ + LL Sbjct: 624 AKDKLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKATELGIKVIDEEELIRLLN 677 >gi|168261543|ref|ZP_02683516.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205349337|gb|EDZ35968.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 671 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|238912842|ref|ZP_04656679.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 671 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLERLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIVQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLTKAQELGINVIDEAEMIRLL 669 >gi|224583040|ref|YP_002636838.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|254781413|sp|C0PZB4|DNLJ_SALPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|224467567|gb|ACN45397.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 671 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIVQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|304398312|ref|ZP_07380186.1| DNA ligase, NAD-dependent [Pantoea sp. aB] gi|304354178|gb|EFM18551.1| DNA ligase, NAD-dependent [Pantoea sp. aB] Length = 672 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 246/712 (34%), Positives = 391/712 (54%), Gaps = 49/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + ++ L + +H+ Y+ P + D+EYD L R + PDL P+ Sbjct: 1 MKSVQDHITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRQLEEEHPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G +V H +P LSL+ ++ F R+ K+ I + E K Sbjct: 58 PTQRVGAAPLTVFEQVRHEVPMLSLDNAFDEATFMAFNKRVQDRL--KNSEDITYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE G V AA RGDG +GE+++A +R I IP L + P +EVRGEV+ Sbjct: 116 LDGAAVSLMYENGLLVQAATRGDGTTGENITANVRTIRAIPLRLKGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 +++ F LN+E K +ANPRNAA+G LR+L+P R L FF +G G Sbjct: 176 MTQRGFEKLNEEARRTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEM 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 LQ+ + G PV++ +++ + +++Y E++ R L +DIDG+V KVD + Sbjct: 236 PHSHMARLQQFKAWGLPVSDRIKRVHNAEEALAFYREIEQQRPNLGFDIDGVVIKVDSQA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW I+ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWAIAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GDRV+++RAG+VIP+VV++++ ER + + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDRVVIRRAGDVIPQVVNVVIAERPEETREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R + RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PAHCPVCGSEVERVEGE------SVTRCTGGLICGAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ D++ K ++ +L Sbjct: 459 IDQLVEKE----YVSTPADLFRLTA------GKLTGLDRMGPKSAQNVVDALEKAKSTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ Q D +LI VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAANLANHFGELQKVMDA----------DLEALIAVPDVGKVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + F + N + L +E+ + + + S K +V TG+L ++ R A Sbjct: 559 HVRNFMEEESNREVIRQLTEEIGIHWPQVVVVKAEEIDSPFAGKTVVLTGSLSQMNRDDA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL Sbjct: 619 KAQLVALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLL 670 >gi|149184723|ref|ZP_01863041.1| DNA ligase [Erythrobacter sp. SD-21] gi|148832043|gb|EDL50476.1| DNA ligase [Erythrobacter sp. SD-21] Length = 690 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 274/717 (38%), Positives = 404/717 (56%), Gaps = 34/717 (4%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P++ ++ +A EL L + I+ H+ Y+ P I D E+DAL RR + FP L R Sbjct: 6 PVD-MTEAEAANELMRLARAIAKHNKLYHAEDAPEITDQEFDALVRRNAELEEQFPHLVR 64 Query: 68 SEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 + P +G E+ S L KVTH + +SL+ ++ E++ +++ R+ RF + + Sbjct: 65 E---DSPSKVVGHEIAASPLSKVTHEVRMMSLDNAFSGEEVAEWVARVRRFLSLDESEEV 121 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 T E KIDG ++RYEKG+ V AA RGDG GEDV+ I I IP+ LS ++PE+ E Sbjct: 122 AITAEDKIDGLSCSLRYEKGRLVRAATRGDGQVGEDVTPNIAHIADIPQQLSGDVPEVFE 181 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 +RGEVY++K DF ALN G K +ANPRNAA+G LR+ + + R L F+ HG G Sbjct: 182 IRGEVYMAKADFSALNAAQEDAGGKLFANPRNAAAGSLRQKDASVTAKRPLRFWAHGWGA 241 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S + Q E+++++ G PV+ + + ++++Y ++ R LPY+IDG+VYK Sbjct: 242 ASAVPGATQEEVVRQIENWGVPVSPLFTRVHDVEAMLAHYAKIAKERPDLPYEIDGVVYK 301 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD Q++LG A++PRW ++HKF +QA T L IDIQ+GRTG LTPV RL PV +GG Sbjct: 302 VDRLDYQQRLGFVAKAPRWALAHKFPAEQAETTLEAIDIQVGRTGKLTPVGRLAPVLVGG 361 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +TN TLHN D I L +R GDRV+V+RAG+VIP++ + R Sbjct: 362 VTVTNVTLHNRDEIARL-----------GVRPGDRVVVQRAGDVIPQL--VDNLTRETSR 408 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 +PF+FP CP C S V + RCTGGL C AQ+ ERLKHFVSR A +I+G Sbjct: 409 EPFAFPDHCPECGSEAVAEEGE------VDVRCTGGLICPAQRTERLKHFVSRGALDIDG 462 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG++ +D FF + PADIF L +R+ I + G+ + SV L DSI R Sbjct: 463 LGEKTIDQFF----ALGWLESPADIFHLHQRRD----AILALEGWQERSVDKLVDSIEAR 514 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R R +F LGIRHVGA AR L K++ + A + + SL + +G Sbjct: 515 RAPDAARLLFGLGIRHVGAVTARDLMKHFHELPALREAAEAAHAGDEEAAASLTSIDGIG 574 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + +A+ +F+ N + ++ EV+P E S + K +VFTG L+ + R + Sbjct: 575 GAVVEALGDFFHEDHNKAVWDDIISEVTPPPYIVE-TKESPVSGKTVVFTGKLETMSRDE 633 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A+ +LGA S +S KTD+++ G GSKL+KA LG+K+++E + ++ + Sbjct: 634 AKAQAERLGAKASGSVSAKTDLLVAGPGAGSKLKKAADLGIKVIDEAGWAKIVAEAG 690 >gi|328473436|gb|EGF44284.1| NAD-dependent DNA ligase LigA [Vibrio parahaemolyticus 10329] Length = 670 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 251/713 (35%), Positives = 392/713 (54%), Gaps = 48/713 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E + L L++ + YH YY P I D+EYD L R I PDL Sbjct: 1 MS-ESVHQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTV--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG+ +VTH +P LSL+ ++ +L F R + + E Sbjct: 57 DSPSQRVGGKPLSEFSQVTHEVPMLSLDNAFDDSELDSFHKRAQDRIGGESIKQ--YCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 PK+DG +++ YE G V AA RGDG +GE+++ +R I IP L + P +EVRGE Sbjct: 115 PKLDGLAVSLLYENGILVQAATRGDGTTGENITENVRTINAIPLKLRGDDWPARLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249 V++ K F LN+ G K + NPRNAA+G LR+L+ +R L+F+ + +G Sbjct: 175 VFMPKAGFEKLNELARQKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGA 234 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 A YE +++ G P+ ++ ++ + +YY ++ R LPY+IDG+V K+D+ Sbjct: 235 DLAASHYERFLQIKSWGLPMCQETKRVDSLADVKTYYQDILQRRDALPYEIDGVVIKIDD 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 ++Q +LG AR+PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEPV +GG + Sbjct: 295 IAVQDRLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I+ L +++GD+V+++RAG+VIP+VV +I R A+ Sbjct: 355 SNATLHNADEIERLQ-----------VKIGDQVVIRRAGDVIPQVVSVIKERRPETARDI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CP+C S V R A RCTGGL C AQ+ + LKHFVSR A +++GLG Sbjct: 404 IFPTQCPVCGSHVERIEGE------AVTRCTGGLVCQAQRKQALKHFVSRKALDVDGLGD 457 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E + PAD+F L S + + G S N+ +++ K + Sbjct: 458 KVIEQLVDRE----MVETPADLFKL------SAGVLTVLERMGPKSAQNIVNALEKSKLT 507 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF++SLGIR VG A +LA+++ S + LI V +G ++ Sbjct: 508 TLPRFLYSLGIREVGEATAANLAQHFKSLEAIQAATE----------EQLIAVQDIGVVV 557 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A+ I F++ +N V+ LL + P + E+ +E K +V TGTL ++ R +A Sbjct: 558 AKHITTFFEEEQNQAVVQDLLVQGIHWPEVSAPEQGAELPLEGKTVVLTGTLSQLGRTEA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + LGA V+ +S+KTDI+ G+N GSKL KAQ+LG++I E+ L L+ Sbjct: 618 KEALQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELIN 670 >gi|28897574|ref|NP_797179.1| NAD-dependent DNA ligase LigA [Vibrio parahaemolyticus RIMD 2210633] gi|260878266|ref|ZP_05890621.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AN-5034] gi|260895418|ref|ZP_05903914.1| DNA ligase (NAD+) [Vibrio parahaemolyticus Peru-466] gi|260903353|ref|ZP_05911748.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AQ4037] gi|81728289|sp|Q87RJ4|DNLJ_VIBPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|28805786|dbj|BAC59063.1| DNA ligase [Vibrio parahaemolyticus RIMD 2210633] gi|308088617|gb|EFO38312.1| DNA ligase (NAD+) [Vibrio parahaemolyticus Peru-466] gi|308090169|gb|EFO39864.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AN-5034] gi|308107994|gb|EFO45534.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AQ4037] Length = 670 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 251/713 (35%), Positives = 392/713 (54%), Gaps = 48/713 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E + L L++ + YH YY P I D+EYD L R I PDL Sbjct: 1 MS-ESVHQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTV--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG+ +VTH +P LSL+ ++ +L F R + + E Sbjct: 57 DSPSQRVGGKPLSEFSQVTHEVPMLSLDNAFDDSELDSFHKRAQDRIGGESIKQ--YCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 PK+DG +++ YE G V AA RGDG +GE+++ +R I IP L + P +EVRGE Sbjct: 115 PKLDGLAVSLLYENGILVQAATRGDGTTGENITENVRTINAIPLKLRGDDWPARLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249 V++ K F LN+ G K + NPRNAA+G LR+L+ +R L+F+ + +G Sbjct: 175 VFMPKAGFEKLNELARQKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGA 234 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 A YE +++ G P+ ++ ++ + +YY + R LPY+IDG+V K+D+ Sbjct: 235 DLAASHYERFLQIKSWGLPMCPETKRVDSLADVKTYYQHILQRRDALPYEIDGVVIKIDD 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 ++Q++LG AR+PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEPV +GG + Sbjct: 295 IAVQERLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I+ L +++GD+V+++RAG+VIP+VV +I R A+ Sbjct: 355 SNATLHNADEIERLQ-----------VKIGDQVVIRRAGDVIPQVVSVIKERRPETARDI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CP+C S V R A RCTGGL C AQ+ + LKHFVSR A +++GLG Sbjct: 404 IFPTQCPVCGSHVERIEGE------AVTRCTGGLVCQAQRKQALKHFVSRKALDVDGLGD 457 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E + PAD+F L S + + G S N+ +++ K + Sbjct: 458 KVIEQLVDRE----MVETPADLFKL------SAGVLTVLERMGPKSAQNIVNALEKSKLT 507 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF++SLGIR VG A +LA+++ S + LI V +G ++ Sbjct: 508 TLPRFLYSLGIREVGEATAANLAQHFKSLEAIQAATE----------EQLIAVQDIGVVV 557 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A+ I F++ +N V+ LL + P + E+ +E K +V TGTL ++ R +A Sbjct: 558 AKHITTFFEEEQNQAVVQDLLVQGIHWPEVSAPEQGAELPLEGKTVVLTGTLSQLGRTEA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + LGA V+ +S+KTDI+ G+N GSKL KAQ+LG++I E+ L L+ Sbjct: 618 KEALQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELIN 670 >gi|56412686|ref|YP_149761.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361620|ref|YP_002141256.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81362021|sp|Q5PNE2|DNLJ_SALPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781414|sp|B5BB72|DNLJ_SALPK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56126943|gb|AAV76449.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093096|emb|CAR58535.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 671 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIVQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLL 669 >gi|168231967|ref|ZP_02657025.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471791|ref|ZP_03077775.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458155|gb|EDX46994.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205333574|gb|EDZ20338.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 671 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 243/712 (34%), Positives = 392/712 (55%), Gaps = 48/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLLD 670 >gi|291618312|ref|YP_003521054.1| LigA [Pantoea ananatis LMG 20103] gi|291153342|gb|ADD77926.1| LigA [Pantoea ananatis LMG 20103] Length = 672 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 251/712 (35%), Positives = 403/712 (56%), Gaps = 49/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++ ++ L + +H+ Y+ P + D+EYD L R + PDL P+ Sbjct: 1 MKSVQEHITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEEQHPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ ++ R F R+ + DD + + E K Sbjct: 58 PTQRVGAAPLMVFEQVRHEVPMLSLDNAFDEASFRAFNKRVQDRLKSSDD--LVYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE G AA RGDG +GE++++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGLLTRAATRGDGTTGENITSNVRTIRAIPLRLKGENIPARVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 +++N F LN E K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MTQNGFEKLNAEARRTEGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGIGLLEGGEM 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + LQ+ + G PV++ +R + +++Y+E+ + R+ L +DIDG+V KVD Sbjct: 236 PRSHMARLQQFKAWGLPVSDRIRLVHNVDEALAFYHEVDAQRAELGFDIDGVVIKVDSQD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG AR+PRW ++ KFA ++ T + D++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEKLGFVARAPRWAVAFKFAAQEQMTIVRDVEFQVGRTGAITPVARLEPVQVAGVMVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++V+ER DA+ F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVVSERPEDAREILF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C S V R A RCTGGL C AQ+ E LKHFVSR A ++EG+G + Sbjct: 405 PSHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVSRRAMDVEGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E ++ PAD+F L R T + G S N+ D++ K ++ +L Sbjct: 459 IDQLVEKE----YVKTPADLFRLTRETLTG------LDRMGAKSAQNVVDALEKAKSTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ Q D +LI V VG ++A+ Sbjct: 509 ARFLYALGIREVGEATAANLANHFGELQKVMDA----------DLDALIAVQDVGTVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + F + N + L++++ + + + + S K +V TG+L ++ R A Sbjct: 559 HVRHFMEEESNRDVIRQLVEDIGINWPQVMVVKAEEIDSPFAGKTVVLTGSLSQMNRDDA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +T+LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL Sbjct: 619 KARLTELGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLL 670 >gi|301155433|emb|CBW14899.1| DNA ligase, NAD(+)-dependent [Haemophilus parainfluenzae T3T1] Length = 667 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 254/705 (36%), Positives = 402/705 (57%), Gaps = 45/705 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ +L Q++ ++ Y+ P I D+EYD L + A+ A P+L + + P + Sbjct: 4 QQQIDTLRQDLRRYEYEYHVLDNPTIPDAEYDRLFHQLKALEAAHPELITA---DSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + ++ H IP LSL+ ++ E+ F+ RI + D + F EPK+DG Sbjct: 61 VGAKPLSGFAQIRHEIPMLSLDNAFSDEEFYAFVKRIEDRLIRLPD-PLTFCCEPKLDGL 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196 ++I Y G AA RGDG +GED++A IR I IP L N P +EVRGEV++ Sbjct: 120 AVSILYVNGVLTQAATRGDGTTGEDITANIRTIRNIPLQLLMDNPPARLEVRGEVFMPHE 179 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF-AKGQ 254 F LN + + G K +ANPRNAA+G LR+L+P ++ +G+G + Sbjct: 180 GFERLNQQALEKGEKTFANPRNAAAGSLRQLDPKITSKRPLVLNAYGIGIAEGVDLPNTH 239 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 Y+ LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ +LQ++ Sbjct: 240 YDRLQWLKSIGIPVNPEIRLCNGTDEVLDFYRDIQNKRSSLGYDIDGTVLKINDIALQEK 299 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +++PRW I++KF ++ TRL D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 300 LGFISKAPRWAIAYKFPAQEELTRLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 359 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L DI +GD V+++RAG+VIP+++ ++ + R DA+P FP C Sbjct: 360 NGDEIERL-----------DIAIGDMVVIRRAGDVIPQIIGVLHDRRPADARPIVFPETC 408 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S +VR A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++ Sbjct: 409 PVCDSAIVRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKLIEQL 462 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 E I PAD+F L T + + G S N S+ K +N +L RF+ Sbjct: 463 VDRE----LIHTPADLFKL------DLTALTRLERMGTKSAENALASLEKAKNTTLARFV 512 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A +LA ++ + + D +L +VP VG+++A I+ Sbjct: 513 FALGIREVGEATALNLANHFKTLEALQNA----------DLEALQQVPDVGEVVANRILA 562 Query: 615 FYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+ P N+ V L+ + ++ + + + K +V TGTL ++ R++A+ + + Sbjct: 563 FWHEPHNVAVVNDLIAQGVHWETVEAKEVIENRFKGKTVVLTGTLTQMGRNEAKALLQDM 622 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 GA VS +S KTD +I GD GSKL KAQ+LGV ++ EE+FL + Sbjct: 623 GAKVSGSVSAKTDFVIAGDAAGSKLTKAQELGVTVLTEEEFLAQI 667 >gi|327394702|dbj|BAK12124.1| DNA ligase LigA [Pantoea ananatis AJ13355] Length = 672 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 251/712 (35%), Positives = 403/712 (56%), Gaps = 49/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++ ++ L + +H+ Y+ P + D+EYD L R + PDL P+ Sbjct: 1 MKSVQEHITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEEQHPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ ++ R F R+ + DD + + E K Sbjct: 58 PTQRVGAAPLMVFEQVRHEVPMLSLDNAFDEASFRAFNKRVQDRLKSSDD--LVYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE G AA RGDG +GE++++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGLLTRAATRGDGTTGENITSNVRTIRAIPLRLKGENIPARVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 +++N F LN E K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MTQNGFEKLNAEARRTEGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGIGLLEGGEM 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + LQ+ + G PV++ +R + +++Y+E+ + R+ L +DIDG+V KVD Sbjct: 236 PRSHMARLQQFKAWGLPVSDRIRLVHNVDEALAFYHEVDAQRAELGFDIDGVVIKVDSQD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG AR+PRW ++ KFA ++ T + D++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEKLGFVARAPRWAVAFKFAAQEQMTVVRDVEFQVGRTGAITPVARLEPVQVAGVMVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++V+ER DA+ F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVVSERPEDAREILF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C S V R A RCTGGL C AQ+ E LKHFVSR A ++EG+G + Sbjct: 405 PSHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVSRRAMDVEGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E ++ PAD+F L R T + G S N+ D++ K ++ +L Sbjct: 459 IDQLVEKE----YVKTPADLFRLTRETLTG------LDRMGAKSAQNVVDALEKAKSTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ Q D +LI V VG ++A+ Sbjct: 509 ARFLYALGIREVGEATAANLANHFGELQKVMDA----------DLDALIAVQDVGTVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + F + N + L++++ + + + + S K +V TG+L ++ R A Sbjct: 559 HVRHFMEEESNRDVIRQLVEDIGINWPQVMVVKAEEIDSPFAGKTVVLTGSLSQMNRDDA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +T+LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL Sbjct: 619 KARLTELGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLL 670 >gi|194289797|ref|YP_002005704.1| DNA ligase [Cupriavidus taiwanensis LMG 19424] gi|254781303|sp|B3R2C2|DNLJ_CUPTR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|193223632|emb|CAQ69639.1| DNA ligase [Cupriavidus taiwanensis LMG 19424] Length = 709 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 252/709 (35%), Positives = 378/709 (53%), Gaps = 54/709 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ L +E+ H+ YY P + D+EYDAL A+ P+L + P+ P ++G Sbjct: 27 RVAWLREELDRHNYQYYVLDAPTVPDAEYDALFSELMALELEHPEL---QTPDSPTQRVG 83 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----------NSIFF 128 GE + V H +P LSL + ED+ F R + + +++ + Sbjct: 84 GEPLSAFDSVRHRVPMLSLNNAFADEDVLNFDRRCAQGLGRTAPAAGEADLFSAADAVEY 143 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 E K DG +++RYE G+ V AA RGDG +GEDV+ +R I IP L P ++EVR Sbjct: 144 ACELKFDGLAMSLRYEDGRLVQAATRGDGETGEDVTVNVRTIKAIPLKLRGQAPAVLEVR 203 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEV++ + DF LN G K + NPRNAA+G LR+L+P R L+FF +GLG+ Sbjct: 204 GEVFMFRRDFDKLNARQAEAGEKTFVNPRNAAAGSLRQLDPRITARRPLSFFAYGLGELQ 263 Query: 248 -EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ML LG PV G++ +Y ++ R LPYDIDG+VYKV Sbjct: 264 GVERPPTHSAMLDGFAALGLPVCKDRAVVKGAQGLLDFYRDIGKRRDDLPYDIDGVVYKV 323 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + Q++LG +R+PR+ ++HKF ++ +T + DI++Q+GRTG +TPVARL PV +GG Sbjct: 324 NALAEQERLGFVSRAPRFALAHKFPAQEMTTVVEDIEVQVGRTGAITPVARLRPVFVGGV 383 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +TNATLHNED I+ +D+ VGD V+V+RAG+VIP+VV ++ R DA+ Sbjct: 384 TVTNATLHNEDEIRR-----------KDVHVGDTVIVRRAGDVIPEVVAVVAERRPADAR 432 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F P+ CP+C S + + + A RCTGGL C+AQ+ + L HF R A +IEGL Sbjct: 433 AFVMPTACPVCGSHIEKLEDE------AIARCTGGLICAAQRKQSLLHFAQRRAMDIEGL 486 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ +R PAD++ L K+ + D S NL +I+K R Sbjct: 487 GDRLVEQLVDQ----GIVRTPADLYKL------GVAKLAALERMADKSAANLVAAIDKSR 536 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 ++ RFIF+LGIRHVG A+ LA+++ D +L+ V VG Sbjct: 537 ATTMNRFIFALGIRHVGEATAKDLARHFGKLDALMAA----------DEAALLEVNDVGP 586 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++AQ+I F+ P N+ +E L + + K V TGTL + R Sbjct: 587 VVAQSIAHFFAEPHNVEVIEQLRAAGVHWPESEPVAKSPAPLSGKTFVLTGTLPTLSRED 646 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 A+E + GA V+ +S+KTD ++ G GSKL+KA+ LGV +++E Sbjct: 647 AKELLEAAGAKVAGSVSKKTDYVVAGAEAGSKLDKAEALGVPVLDEAGM 695 >gi|168243193|ref|ZP_02668125.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449589|ref|YP_002046491.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|254781411|sp|B4TCF6|DNLJ_SALHS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|194407893|gb|ACF68112.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205337689|gb|EDZ24453.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 671 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQTAT----------IDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|194444893|ref|YP_002041687.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|254781412|sp|B4SZU5|DNLJ_SALNS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|194403556|gb|ACF63778.1| DNA ligase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 671 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLL 669 >gi|255264005|ref|ZP_05343347.1| DNA ligase, NAD-dependent [Thalassiobium sp. R2A62] gi|255106340|gb|EET49014.1| DNA ligase, NAD-dependent [Thalassiobium sp. R2A62] Length = 711 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 291/715 (40%), Positives = 427/715 (59%), Gaps = 18/715 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I ++ L+ A EL+ L + +D Y+ P + D+EYDALKRR AI FPDL Sbjct: 13 IDVDDLTRTAATDELTWLSYVLGQANDDYHGSDAPQMSDAEYDALKRRNMAIEARFPDLK 72 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R + P +++G K+TH + LSL + ED+ +F R+ ++ +D ++ Sbjct: 73 RG---DSPSDQVGAAPIDGFGKITHVVRMLSLGNAFTDEDVVEFDRRVRKYLGLED--AL 127 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 +T EPKIDG +++RYE G + AA RGDG GEDV+A R + IP+ L P+++E Sbjct: 128 AYTAEPKIDGLSLSLRYEGGVLIQAATRGDGAVGEDVTANARMVQDIPQTLKNA-PDVLE 186 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY+S DF LN A G K +ANPRNAA+G LR+LN R L FF + G Sbjct: 187 VRGEVYMSHADFEDLNTRQEARGAKSFANPRNAAAGSLRQLNAEITKDRPLRFFAYASGD 246 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S A Q ++++ LGF N + + ++++Y ++ R+TL YDIDG+VYK Sbjct: 247 LSAPLADTQNAAIERLAALGFSTNPLTQLCDDPEAMIAHYRRIEEQRATLGYDIDGVVYK 306 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ LQ++LG R+ +PRW I+HKF + A T L IDIQ+GRTG L+PVARL+PV +GG Sbjct: 307 VNDLGLQRRLGFRSTTPRWAIAHKFPAELAWTTLEAIDIQVGRTGALSPVARLKPVTVGG 366 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHNEDYIKGLD+ G +R GRDI VGD V + RAG+VIPK+ D+ + +R A Sbjct: 367 VVVSNATLHNEDYIKGLDSKGAPIREGRDIWVGDWVQIYRAGDVIPKICDVDLAKRLATA 426 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 Q + FP CP C S VR+ A RC GG+ C AQ +E+LKHFVSR F+I+G Sbjct: 427 QAYEFPETCPECGSHAVREEG------DAVRRCVGGMICPAQAVEKLKHFVSRGGFDIDG 480 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG +Q++ F ++ PADIFTL+ R + +++N G+GD S +NL+D+I+ + Sbjct: 481 LGAKQVEQFHSDA----WVKEPADIFTLRDRFGSGLQQLKNREGWGDKSASNLFDAIDDK 536 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R I L R IF+LGIRHVG A +A Y ++ F + + D W +LI + VG Sbjct: 537 RRIGLGRLIFALGIRHVGDASANLIANRYGTWSAFEGAMTAAVIGEGDAWETLIDIDGVG 596 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++A ++V Q +++ L+ + + S + K +VFTG+L+K+ R + Sbjct: 597 AVMAGSLVRAMQEEAERASIDRLVAHLDVQ-EAVQVTSDSPVAGKTVVFTGSLEKMTRAE 655 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ LGA VS +S KTD+++ G GSK +KA LGV+ ++E+ +L L+ Sbjct: 656 AKARAESLGAKVSGSVSAKTDLLVAGPGAGSKAKKAADLGVETIDEDDWLALIGD 710 >gi|207857840|ref|YP_002244491.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|254781409|sp|B5R3V4|DNLJ_SALEP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|206709643|emb|CAR33993.1| DNA ligase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 671 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQTAT----------IDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + V S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEVDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|120554094|ref|YP_958445.1| DNA ligase, NAD-dependent [Marinobacter aquaeolei VT8] gi|166215819|sp|A1TZT9|DNLJ_MARAV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|120323943|gb|ABM18258.1| DNA ligase, NAD-dependent [Marinobacter aquaeolei VT8] Length = 678 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 252/720 (35%), Positives = 393/720 (54%), Gaps = 48/720 (6%) Query: 12 LS--IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 ++ E RK + SL + H+ YY P I D+EYD L R + P+LA Sbjct: 1 MTNVPETIRKRVDSLRATLEDHNYYYYVQDDPRIPDAEYDRLFRELQKLEAEHPELA--- 57 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 + P ++G S +V H +P LSL+ ++ ++LR F R+ D +I + Sbjct: 58 TEDSPTRRVGSSAETSFEEVIHRLPMLSLDNAFSEDELRDFDRRVRDRLG--ADGAIEYV 115 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188 EPK+DG +++ YE G AA RGDG++GED++A IR IP++P L + P+++EVR Sbjct: 116 CEPKLDGLAVSLHYENGTLTRAATRGDGYTGEDITANIRTIPSVPLKLRGSGYPDLVEVR 175 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVY+ + F LN+ + G K + NPRNAA+G LR+ T R L + + T Sbjct: 176 GEVYMPRAGFEKLNERLAEQGEKTFVNPRNAAAGSLRQKKSTVTARRPLELCAYSMAVTD 235 Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 E + ++ LQ +R GF +N +R+A + YNE+ + R +LPY+IDG+V+KV Sbjct: 236 ESVLPETHWDSLQLVRDWGFRINPEMRKAEGVEACLDAYNELMAKRDSLPYEIDGIVFKV 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + LQ++LG +R+PRW I+HKF ++ T + D++ Q+GRTG +TPVARL+PV +GG Sbjct: 296 NRLDLQQELGFVSRAPRWAIAHKFPAQEELTIIEDVEFQVGRTGAVTPVARLKPVFVGGV 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++NATLHN D I+ L D+ +GD V ++RAG+VIP+VV ++ +R +A Sbjct: 356 TVSNATLHNMDEIRRL-----------DVHIGDTVFIRRAGDVIPQVVKVVPEKRPAEAP 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C S +V+ A RC+GGL C AQ+ E ++H+ SR A +IEGL Sbjct: 405 MVEMPEHCPVCGSDIVQIEGE------AVARCSGGLYCPAQRKEAIRHYASRKAMDIEGL 458 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ + AD++ L + Q S + GD S NL +I++ R Sbjct: 459 GDRLIEVLVDE----GMVSTVADLYRLTKFQIAS------LERMGDKSAANLIAAIDRSR 508 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 L RF+++LGIR VG A+ LA ++ + + + D +L VP VG Sbjct: 509 EPVLWRFLYALGIREVGEATAKGLAAHFGTLEAISAA----------DEETLQTVPDVGP 558 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHK 665 I+A I F+ P N + AL + + + + V TGTL + R + Sbjct: 559 IVAGHIRSFFDQPHNQETLAALKEAGVTWQEEQVLSADEQPLNGQTWVLTGTLSGMTRDQ 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 A+E + QLGA V+ +S+KT ++ G+ GSKL KA+QLGV +++EE LL+++ + Sbjct: 619 AKEKLEQLGAKVAGSVSKKTACVVAGEAAGSKLAKAEQLGVPVLDEEGLANLLREHGIEV 678 >gi|254440003|ref|ZP_05053497.1| DNA ligase, NAD-dependent [Octadecabacter antarcticus 307] gi|198255449|gb|EDY79763.1| DNA ligase, NAD-dependent [Octadecabacter antarcticus 307] Length = 706 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 294/712 (41%), Positives = 432/712 (60%), Gaps = 15/712 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 IE L+ ++A +EL+ L ++ + Y+Q P I D++YDALK R I F DL Sbjct: 5 TSIENLTKDEAAQELARLSALLAQANAEYHQADAPRIPDADYDALKLRNAMIEARFSDLK 64 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R + P +G KV H++ LSL + +D+ +F + +F + + Sbjct: 65 RR---DSPSETVGATPADGFGKVPHALRMLSLGNAFTDDDVTEFDKSVRKFLGL-ETGDL 120 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 FT EPKIDG +++RYE GK V AA RGDG GE+V+A R I +P+VL P+I+E Sbjct: 121 AFTAEPKIDGLSLSLRYENGKLVQAATRGDGAVGENVTANARTIKDVPQVLLDA-PKILE 179 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY+S +DF ALN VG K +ANPRNAA+G LR+L+ + +R L FF + G+ Sbjct: 180 VRGEVYMSHSDFAALNTRQSNVGSKTFANPRNAAAGSLRQLDASITKSRPLKFFAYAWGE 239 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S A Q + +++ LGF N + + ++++Y +++ R+TL YDIDG+VYK Sbjct: 240 VSAPLADTQSGAIARLKTLGFQTNPLTKICASPSEMIAHYRDIEMQRATLGYDIDGVVYK 299 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ SLQ++LG R+ +PRW I+HKF + A T L IDIQ+GRTG L+PVARL PV +GG Sbjct: 300 VDDLSLQRRLGFRSTTPRWAIAHKFPAELAWTTLDAIDIQVGRTGALSPVARLSPVTVGG 359 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ NATLHNEDYI G G +RGG+DIRVGD V + RAG+VIPKV D+ +++R + Sbjct: 360 VVVANATLHNEDYIAGRGNKGDDIRGGKDIRVGDWVQIYRAGDVIPKVADVDLSKRLGET 419 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 PF FP+ CP C S VR+ RCTGGL C AQ +E+LKHFVSR AF+I+G Sbjct: 420 APFDFPTTCPKCGSDAVREEG------DVVRRCTGGLICPAQAVEKLKHFVSRAAFDIDG 473 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG +Q++ F+ D +++ PADIFTL R S TK+ N G+GD SV L+ +++++ Sbjct: 474 LGAKQIEAFYN--DDQLAVKEPADIFTLGARDMGSLTKLANRDGWGDTSVKKLWQAVDEK 531 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R I + R IF+LGIRHVG + LA +Y ++ F + W L+ + VG Sbjct: 532 REIPVARLIFALGIRHVGENASNLLAIHYGTWSTFEDAMTQASVGEGAGWDDLLGIDGVG 591 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++A ++V + +++ L+ ++ P ++ +S + K +VFTG+L+K+ R + Sbjct: 592 AVMAASVVTTFHQSAERASIDRLVAQLRPQDSARPRS-NSPVAGKTVVFTGSLEKMTRAE 650 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 A+ LGA VS +S KTD++I G GSK +KA LG++ M+E+ +L L Sbjct: 651 AKARAESLGAKVSGSVSAKTDLLIAGPGAGSKAKKATDLGIETMDEDGWLAL 702 >gi|20807100|ref|NP_622271.1| NAD-dependent DNA ligase [Thermoanaerobacter tengcongensis MB4] gi|81482513|sp|Q8RC42|DNLJ_THETN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|20515592|gb|AAM23875.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Thermoanaerobacter tengcongensis MB4] Length = 666 Score = 579 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 249/709 (35%), Positives = 383/709 (54%), Gaps = 49/709 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E+ARK + L ++I+YH+ YY +P I D EYD L R + +P+ P Sbjct: 1 MDREEARKRIEELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEFK---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GGE TH +P LSL + E++++F R+ + + +E Sbjct: 58 DSPSQRVGGEPLDEFEPFTHIVPMLSLANAFTAEEIKEFDRRVKEAVG-----EVEYVVE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG + + YE G F + RGDG GE+V+ ++ I +IP L ++ + VRGEV Sbjct: 113 PKIDGLSVELVYENGMFTVGSTRGDGIVGENVTPNLKTIKSIPLRLKDSVN--LVVRGEV 170 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 ++ K F LN+E G +ANPRNAA+G +R+L+P R L+ F+ L + Sbjct: 171 FMPKASFAKLNEERAERGESLFANPRNAAAGSVRQLDPKVTAKRDLDIFIFNLQRIEGRD 230 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K E L+ ++ GF V +++ T ++ E+ ++ +LPYDIDG V KV+E Sbjct: 231 FKTHVEALEFLKEQGFKVIPLIKKCTTIEEVIKAIEELGEMKDSLPYDIDGAVIKVNELD 290 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ LG+ A+ RW I+ K+ + T+++DI +Q+GRTG LTP A LEPV I G++++ Sbjct: 291 KREILGQTAKDYRWAIAFKYPAEMKKTKIVDIVVQVGRTGALTPTAVLEPVVISGSVVSR 350 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNEDYIK +DIR+GD VLV +AG +IP+VV+++ ER D + F Sbjct: 351 ATLHNEDYIK-----------EKDIRIGDTVLVHKAGGIIPEVVEVVKEERTGDEKAFVM 399 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C + VR A RCTG L C AQ R+ HF S+DA +IEGLG Sbjct: 400 PDKCPECGALAVRLPGE------AVRRCTG-LNCPAQIARRIIHFASKDAMDIEGLGPAI 452 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + I+ AD++ L+ R + + GD S NL ++I K + L Sbjct: 453 ISQLLSK----GLIQNVADLYYLKYRDLIT------LERMGDKSARNLLEAIEKSKKRDL 502 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +R +F LGI +G++ A+ +A+++ S N + + + +P +G +A+ Sbjct: 503 DRLLFGLGINLIGSKAAQVIAEHFKSMDNIMKA----------KYEDFLELPDIGPKMAR 552 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +IV F+ +N VE L + VS+ E K V TG L+ R +A + Sbjct: 553 SIVTFFSEEQNRRVVERLKEAGVNMEKLSTGKVSNIFEGKIFVLTGALKNYTRDEAARLI 612 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + G V+ +S+KTD +IVG +PGSKL+KAQ+LGVKI+NEEQF +L+ Sbjct: 613 VERGGKVTNSVSKKTDYLIVGADPGSKLKKAQELGVKIINEEQFEAMLK 661 >gi|205353534|ref|YP_002227335.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|254781410|sp|B5RCP9|DNLJ_SALG2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|205273315|emb|CAR38285.1| DNA ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628629|gb|EGE34972.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 671 Score = 579 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIEQL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQTAT----------IDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|16761347|ref|NP_456964.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|81513487|sp|Q8Z4W4|DNLJ_SALTI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|25294013|pir||AI0809 DNA ligase (NAD) (EC 6.5.1.2) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503646|emb|CAD07659.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhi] Length = 671 Score = 579 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P ILD+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQTGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINAQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|167549563|ref|ZP_02343322.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325268|gb|EDZ13107.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 671 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLETLQAAT----------IDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLL 669 >gi|322613832|gb|EFY10771.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617441|gb|EFY14340.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624929|gb|EFY21758.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629628|gb|EFY26404.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633942|gb|EFY30679.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635621|gb|EFY32332.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639981|gb|EFY36651.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644326|gb|EFY40867.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322655311|gb|EFY51620.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658357|gb|EFY54623.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664357|gb|EFY60554.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668412|gb|EFY64568.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673252|gb|EFY69358.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676644|gb|EFY72712.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683394|gb|EFY79408.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685720|gb|EFY81713.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192602|gb|EFZ77831.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196835|gb|EFZ81978.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202141|gb|EFZ87199.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208024|gb|EFZ92969.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212850|gb|EFZ97659.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217119|gb|EGA01841.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219619|gb|EGA04102.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323229192|gb|EGA13316.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235493|gb|EGA19577.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237321|gb|EGA21384.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245552|gb|EGA29550.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248968|gb|EGA32891.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253065|gb|EGA36897.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255865|gb|EGA39610.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261411|gb|EGA44996.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266454|gb|EGA49942.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269716|gb|EGA53166.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 671 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEIPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +GA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVAVGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|29140957|ref|NP_804299.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213160907|ref|ZP_03346617.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424270|ref|ZP_03357114.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213583650|ref|ZP_03365476.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650852|ref|ZP_03380905.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|29136582|gb|AAO68148.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 671 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P ILD+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINAQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|206560458|ref|YP_002231222.1| DNA ligase [Burkholderia cenocepacia J2315] gi|254781275|sp|B4ECN6|DNLJ_BURCJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|198036499|emb|CAR52396.1| DNA ligase [Burkholderia cenocepacia J2315] Length = 691 Score = 578 bits (1490), Expect = e-162, Method: Composition-based stats. Identities = 256/713 (35%), Positives = 384/713 (53%), Gaps = 52/713 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L ++ + YY +P + D+EYD L R + P+L P+ P ++ Sbjct: 15 ARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELV---TPDSPTQRV 71 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132 GGE V H P LSL + ED+ F R+ K D + + + E Sbjct: 72 GGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKATDLAGSVTDPVEYACEL 131 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191 K DG I++RYE G FV AA RGDG +GEDV+ +R I +IP L P +++VRGEV Sbjct: 132 KFDGLAISLRYENGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGEV 191 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249 + K DF LN+ A ++ +ANPRNAA+G LR+L+ R L+FF +G+G Sbjct: 192 LMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLDGMP 251 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +L G PVN + G++ ++ ++ R +LPYDIDG+VYKV+ Sbjct: 252 MPDTHTALLDWYEAFGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYDIDGVVYKVNRR 311 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q++LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +T Sbjct: 312 DEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVT 371 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA F Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFV 420 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ Sbjct: 421 MPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 474 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + +R PAD+F L + + F + S NL DS+ K ++ + Sbjct: 475 IIDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTT 524 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RFI+ LGIRHVG A+ LAK++ S L+ V VG I+A Sbjct: 525 LARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA----------SIEELLEVNDVGPIVA 574 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++I +F+ N +E L + K + K +V TGTL + R A Sbjct: 575 ESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAA 634 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ LL+ Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 687 >gi|149915267|ref|ZP_01903795.1| DNA ligase, NAD-dependent [Roseobacter sp. AzwK-3b] gi|149810988|gb|EDM70827.1| DNA ligase, NAD-dependent [Roseobacter sp. AzwK-3b] Length = 720 Score = 578 bits (1490), Expect = e-162, Method: Composition-based stats. Identities = 304/716 (42%), Positives = 440/716 (61%), Gaps = 16/716 (2%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P++ LS +QA +EL+ L ++ D Y+ PI+ D+ YDAL +R AI FPDL R Sbjct: 17 PVDKLSADQAAQELARLADLVAQADAAYHGQDAPIMSDAAYDALVQRNAAIEARFPDLMR 76 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + P ++G + KVTH++ LSL + +++R+F RI R+ + ++ Sbjct: 77 E---DSPSRRVGFTPSEGFGKVTHAVRMLSLGNAFEDDEIREFDARIRRYLGLSPEAALT 133 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 +T EPKIDG +++RYE+G+ V AA RGDG GE+V+A R I IP L +PE++E Sbjct: 134 YTSEPKIDGLSLSLRYEQGRLVQAATRGDGAEGENVTANARTIADIPHDLGGAGVPELLE 193 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY+S DF ALN K +ANPRNAA+G LR+L+P R L FF + G Sbjct: 194 VRGEVYMSHADFEALNTRQTERSDKTFANPRNAAAGSLRQLDPKITARRPLKFFAYAWGA 253 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 SE A Q E + ++ GF N + +++ Y ++ +R+ L YDIDG+VYK Sbjct: 254 HSEPLAPSQMEAIARLAGFGFQTNPLTALCDGPDEMLAQYRRIEQLRAELGYDIDGVVYK 313 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+E +LQ +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV +GG Sbjct: 314 VNEIALQHRLGYRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLHPVTVGG 373 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHNEDYI G DA G +RGG+DIRVGD V V RAG+VIPKV D+ +++R D+ Sbjct: 374 VVVSNATLHNEDYIAGRDAKGNKIRGGKDIRVGDWVQVYRAGDVIPKVADVDLSKRPEDS 433 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P++FP CP C S +R+ A RCTGGL C AQ +E+LKHFVSR AF+IEG Sbjct: 434 APYTFPKVCPECGSDAIREEG------DAVRRCTGGLICPAQAVEKLKHFVSRAAFDIEG 487 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGDVSVTNLYDSINK 544 LG +Q++ F IR PADIFTL+ R T+++N G+G+ S NL+D+I++ Sbjct: 488 LGAKQVEQFHAD----GWIREPADIFTLKDRYGPGCLTQLKNRDGWGEKSAANLFDAIDE 543 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 RR I+L R +F+LGIRHVG + LA++Y ++ F ++ A DW L+ + V Sbjct: 544 RRRIALGRLLFALGIRHVGEAASMMLARFYGTWDEFTAAMDGAAAGEGPDWDRLLGIDGV 603 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G ++AQ++V + +++ L+ + S + K +VFTGTL+K+ R Sbjct: 604 GKVMAQSLVTTFAQDEERASIDRLVAHLEIERAERPDTDGSPVAGKTVVFTGTLEKMTRA 663 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +A+ LGA VS +S KTD++I G GSK + A+QLGV++++E+ +L L+ Sbjct: 664 EAKARAEALGAKVSGSVSAKTDLVIAGPGAGSKAKAAEQLGVEMIDEDGWLALIGD 719 >gi|197105771|ref|YP_002131148.1| DNA ligase, NAD-dependent [Phenylobacterium zucineum HLK1] gi|254781386|sp|B4RFE9|DNLJ_PHEZH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|196479191|gb|ACG78719.1| DNA ligase, NAD-dependent [Phenylobacterium zucineum HLK1] Length = 692 Score = 578 bits (1490), Expect = e-162, Method: Composition-based stats. Identities = 286/712 (40%), Positives = 416/712 (58%), Gaps = 27/712 (3%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +E+L+ +A +EL+ L EI+ HD YY+ P I D+ YDAL+RR D + AFP L R Sbjct: 4 VESLTEAEAAEELTRLADEIAAHDIRYYREDAPTISDAAYDALRRRNDELEAAFPHLIRE 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 N P +IG V H +P LSL+ ++ D +F R+ RF + D + + Sbjct: 64 ---NSPSLRIGAARAEQFAPVEHGVPMLSLDNAFSDADALEFDARVKRFLRL--DEEVAY 118 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEV 187 T EPKIDG +IRYE G+ V AA RGDG GEDV+A +R I IP+ L PE+IE+ Sbjct: 119 TAEPKIDGLSCSIRYENGRLVRAATRGDGRVGEDVTANVRTIGEIPQKLHGQAWPEVIEI 178 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY+ +F ALN+ + G+K YANPRNAA+G LR+++P R L FF + G Sbjct: 179 RGEVYLGHAEFAALNEAAASAGQKTYANPRNAAAGSLRQIDPKITAQRPLRFFAYAWGFV 238 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 S FA+ Q+E LQ ++ GF R G++ Y EM++ R L +DIDG+VYKV Sbjct: 239 SAPFAQTQWEALQALKAWGFRTTPQSRCVKGAEGLMEAYREMEAERPHLGFDIDGVVYKV 298 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D Q++LG +R+PRW I+ KF +QA T L IDIQ+GRTG LTPVARL PV +GG Sbjct: 299 DRLEWQQRLGFVSRAPRWGIARKFPAEQARTVLEAIDIQVGRTGALTPVARLTPVTVGGV 358 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++TNATLHN D I L D+RVGD V+++RAG+VIP+++ +I ER D+ Sbjct: 359 VVTNATLHNADEIARL-----------DVRVGDTVVLQRAGDVIPQILRVIPEERPKDSV 407 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP CP V +G RC+G AC Q++ L HFVSR AF+IEGL Sbjct: 408 PYDFPHVCPCPLRTEVVRETTASGAETVVRRCSGEFACPFQRINHLLHFVSRRAFDIEGL 467 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++QL FF+ I+ PADIF L ++ ++ + G+ SV NL +I RR Sbjct: 468 GEKQLTAFFER----GWIKAPADIFRLHEKRD----ELLAMERMGETSVGNLLANIEARR 519 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 I L+RFI+ LGIRH+G A +A+ Y + +F + ++ + A + + L + +G Sbjct: 520 TIGLDRFIYGLGIRHIGETTATVMARGYGTAAHFLEAMDKVAARDPEAVEELDALDQIGG 579 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + +A F+ N VE L +++ K + + K +VFTG L+++ R +A Sbjct: 580 AVIEAAAAFFGEDHNRAMVEDLAGQLTILDAEKPK-TDTAVAGKTVVFTGALERMTRDEA 638 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA VS +S+KTDI++ G GSKL+ A +LG++++ E+++L ++ Sbjct: 639 KAQAERLGAKVSGSVSKKTDIVVAGPGAGSKLKTAAELGIQVLTEDEWLEMV 690 >gi|198243638|ref|YP_002216496.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|254781408|sp|B5FQB9|DNLJ_SALDC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|197938154|gb|ACH75487.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326624250|gb|EGE30595.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 671 Score = 578 bits (1490), Expect = e-162, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 391/711 (54%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLV 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQTAT----------IDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|161831535|ref|YP_001596473.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 331] gi|190359249|sp|A9NC33|DNLJ_COXBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|161763402|gb|ABX79044.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 331] Length = 670 Score = 578 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 246/709 (34%), Positives = 387/709 (54%), Gaps = 46/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + +K + L EI+ H+ YY S+P I DS YD L + + +P+ + P+ Sbjct: 4 PAKIQKRIERLRHEINDHNYRYYVLSQPTIPDSVYDELFHELEKLEKKYPE---TITPSS 60 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G E V H IP LSL+ +++ + LR F RI + K D + EPK Sbjct: 61 PTQRVGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRL--KLDKPFEYVCEPK 118 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG +++ YE G+ + AA RGDG++GE+V+ R I ++P L N PE++E+RGEV Sbjct: 119 MDGVALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVL 178 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + + F N E G K +ANPRNAASG LR+L+P R L F+ + +G Sbjct: 179 MPREGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDF 238 Query: 252 K-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 ++L+ + G PV + ++ G + YY + R +P+DIDG+V KV+ Sbjct: 239 PKNHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQ 298 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q +LG +R+PRW I++KF ++ T + I+ Q+GRTG +TPVARLEPV++ G ++N Sbjct: 299 VQAELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSN 358 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D + +D+RVGD V+V+RAG+VIP+VV I+ +R A+ Sbjct: 359 ATLHNFDEL-----------YRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKI 407 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C + V++ A RC GGL C AQ E +KHF SR A +IEGLG + Sbjct: 408 PSRCPVCHAEVIKPEGE------AVARCVGGLYCRAQLRESIKHFSSRRALDIEGLGDKL 461 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F + + I+ I+ L++ + I + G+ S NL +I K + +L Sbjct: 462 VELFIQEK----LIKDITGIYQLKK------SAITALPRMGEKSAENLLTAIEKSKKTTL 511 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG AR+LA+++ + +L + +G + A+ Sbjct: 512 PRFLYALGIRGVGDTTARTLARHFHELDLLMKA----------SIETLQEIRDIGPVAAE 561 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I F+ N + L+ + + + V SEI K V TG L+ + R +A+E + Sbjct: 562 NIHAFFHQKNNAELINKLI-HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEEKI 620 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + G ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+ Sbjct: 621 ERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 669 >gi|254489942|ref|ZP_05103137.1| DNA ligase, NAD-dependent [Methylophaga thiooxidans DMS010] gi|224465027|gb|EEF81281.1| DNA ligase, NAD-dependent [Methylophaga thiooxydans DMS010] Length = 673 Score = 578 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 247/715 (34%), Positives = 391/715 (54%), Gaps = 46/715 (6%) Query: 12 LSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ++I + ++ ++L + I++++ YY P + D+EYD L + P+L + Sbjct: 1 MTISTEVQQRAATLRELINHYNYLYYVTDNPEVPDAEYDRLFSELQQLEQTHPELLTA-- 58 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++GGE+ ++ H++P LSL+ +++ E L F R+ + D + Sbjct: 59 -DSPTQRVGGEVLDKFAEIEHAMPMLSLDNVFDQEALTAFDKRVRDWLN--TDQPQIYAA 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRG 189 EPK+DG I+IRYE+G V AA RGDG+ GEDV+A +R I ++P LS + P I+EVRG Sbjct: 116 EPKLDGLAISIRYEQGVLVQAATRGDGNYGEDVTANVRTIKSVPLKLSGDNIPAIVEVRG 175 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 E+++ K+ F LN + +K + NPRNAA+G LR+L+ TR L + +G+G Sbjct: 176 EIFMPKDGFERLNQSQLDNNKKVFVNPRNAAAGSLRQLDSKITATRPLEIYCYGIGYIEG 235 Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E + + G ++ +++ Y ++ R +L YDIDG+V KVD Sbjct: 236 AARPASHTEAMSMIANWGCRISPELKKLEGLEACHRYIEQLGERRDSLAYDIDGVVLKVD 295 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +LQ++LG +R+PRW I++KF ++ T + DI+IQ+GRTG LTPVARL+PV +GG Sbjct: 296 NTALQERLGFVSRAPRWAIAYKFPAQEEMTTIEDIEIQVGRTGALTPVARLKPVFVGGVT 355 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHNED I+ +D+R+GD+V+V+RAG+VIP+VV +I+++R + Sbjct: 356 VSNATLHNEDEIRR-----------KDVRIGDQVIVRRAGDVIPEVVKVILSKRTDTVRE 404 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P+ CP+C S V R+ A RC+GGL C AQ+ E +KHF SR A +++GLG Sbjct: 405 FVMPTQCPVCGSDVEREAGE------AVSRCSGGLFCPAQRKEAIKHFASRKALDVDGLG 458 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 D + A I+ AD+F L Q + G S NL +I + Sbjct: 459 ----DKLVEQMVDAELIKDAADLFVLTVEQLAG------LERMGQKSADNLVRAIKASKQ 508 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 RF+++LGIR VG ARSLA ++ D +L+ + VG I Sbjct: 509 TRFPRFLYALGIREVGEATARSLAMHFADLDALKAA----------DSEALVEIEDVGPI 558 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +A I F+Q P N+ + L+ + + S + K +V TGTL ++ R +A+ Sbjct: 559 VAHHIETFFQQPHNLEVINRLIDVGVSWPQEEKSHSDSALSGKTIVLTGTLVQMSRSEAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 E + LGA V+ +S+KTD ++ G + GSKL KA L + +++E L L+Q Sbjct: 619 EKLLALGAKVAGSVSKKTDYVVAGADAGSKLTKAASLDISVVDEAMLLEWLKQEK 673 >gi|260774893|ref|ZP_05883794.1| DNA ligase [Vibrio coralliilyticus ATCC BAA-450] gi|260609148|gb|EEX35306.1| DNA ligase [Vibrio coralliilyticus ATCC BAA-450] Length = 669 Score = 578 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 258/712 (36%), Positives = 398/712 (55%), Gaps = 48/712 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S ++ ++ L+ L + + YH YY P + D+EYD L R + PDL Sbjct: 1 MS-QEIQERLNQLRETLHYHGVKYYVEDNPEVPDAEYDRLMRELLELEAEHPDLV---SI 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG+ VTH IP LSL+ ++ E+L F R+ + N F E Sbjct: 57 DSPSQRVGGQPLDGFQSVTHEIPMLSLDNAFDDEELESFHKRMSDRIPTAEFNV--FCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 PK+DG +++ YE G V AA RGDG +GE+++ +R I +IP LS P+ IEVRGE Sbjct: 115 PKLDGLAVSLLYENGILVQAATRGDGTTGENITENVRTIKSIPLKLSGQGWPQRIEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249 V++ K F LN + G K + NPRNAA+G LR+L+ TR L+F+ + +G I Sbjct: 175 VFMPKEGFDKLNQQAQKKGEKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVEGI 234 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 ++ YE +++ G P+ R+ + +YY ++ R LPY+IDG+V KVD+ Sbjct: 235 ALSESHYERFLQLKGWGLPMCPETRRVANLTEVKAYYQDILERREALPYEIDGVVIKVDD 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ+QLG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG + Sbjct: 295 IALQEQLGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPVFVGGVTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I+ L ++VGD V+++RAG+VIP++V +I R +A+ Sbjct: 355 SNATLHNADEIERL-----------GVKVGDSVIIRRAGDVIPQIVSVIEERRPGNARDI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP+C S V R A RC+GGL C AQ+ E LKHFVSR A +++GLG+ Sbjct: 404 VFPERCPVCSSEVERIEGE------AVARCSGGLVCQAQRKEALKHFVSRKALDVDGLGE 457 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E + PAD+F L S I + G S N+ D++N+ + Sbjct: 458 KVIEQLVDRE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVDALNQAKLT 507 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF++SLGIR VG A +LA+Y+ + + LI V +GDI+ Sbjct: 508 TLPRFLYSLGIREVGEATAANLAQYFKTLDAVKAA----------NHEQLIEVSDIGDIV 557 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A ++ F+ +N ++ LL + P I ++ + K +V TG+L ++ R+ A Sbjct: 558 ASHVIAFFAQDKNQQVIQDLLDQGIEWPEIEEQSEDTPQPLAGKTVVLTGSLSQLSRNDA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + LGA V+ +S+KTDI+ G+N GSKL KAQ+LG++I E+ + L+ Sbjct: 618 KSALQALGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLVDLI 669 >gi|240142614|ref|YP_002967127.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1] gi|240012561|gb|ACS43786.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1] Length = 712 Score = 578 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 306/715 (42%), Positives = 445/715 (62%), Gaps = 14/715 (1%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 + +P+ LS E AR E ++L EI+ HD+ Y+ PI+ D+EYDAL+RR I A P Sbjct: 8 RAVPVAELSNEDARIEHAALASEIAEHDERYHGQDAPIVTDAEYDALRRRAAEIEAAHPA 67 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 LA + K+G + + K+ H+IP LSLE + ED+ +F RI RF Sbjct: 68 LAAESEVA---KKVGAKPSSRFGKIVHAIPMLSLENAFVDEDVAEFAVRIRRFLDLPGGA 124 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 + FT EPKIDG ++IRYE + V+AA RGDG +GE+V+A I IP L + P++ Sbjct: 125 PLAFTAEPKIDGLSLSIRYENRRLVHAATRGDGAAGENVTANALTIQDIPDDLPRDAPDV 184 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +E+RGEVY+SK+ F A+N A G+ +ANPRNAA+G LR+L+P +R L FF + Sbjct: 185 VEIRGEVYLSKSAFAAINARQEAAGKPLFANPRNAAAGSLRQLDPKITASRPLKFFAYSW 244 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G+TS A+ Q+ L + GF VN + +T ++ Y + ++R+ L YDIDG+V Sbjct: 245 GETSAPIAEAQHAALARFDDWGFYVNPLTKLCSTVEEMLEVYRAIGAMRADLEYDIDGVV 304 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YKVD+ +LQ++LG +R+PRW ++HKF +QA T L I+IQ+GRTG LTPVA+L P+ + Sbjct: 305 YKVDDLALQRRLGFVSRAPRWAVAHKFPAQQAETVLEAIEIQVGRTGSLTPVAKLRPLTV 364 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +++NATLHNEDYIKGLD+ G+ +R GRD+RVGD V+V+RAG+VIP++VD+ ++R Sbjct: 365 GGVVVSNATLHNEDYIKGLDSDGQPIREGRDLRVGDHVIVQRAGDVIPQIVDVDPSKRSE 424 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P+ FP CP+C S VR+ NPK+G+ + RCTGGL C AQ +ER+KHF SR A +I Sbjct: 425 GTAPYEFPKLCPVCGSHAVREANPKSGREDSVRRCTGGLICQAQAVERIKHFASRGAMDI 484 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGLG ++++ F + + +R P+DIFTL+RRQ + G G SV NL+ +I+ Sbjct: 485 EGLGDERIEDFHRDD----LLRTPSDIFTLRRRQDAGEIDLTAREGMGPTSVANLFAAID 540 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 RR + LER I LGIRHVG A+ LAK Y S + A + L + Sbjct: 541 ARRKVPLERLIHGLGIRHVGETNAKLLAKAYRSLPAVREAAQVPDALKRM--VDL--ING 596 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 +G ++A A+VEF+ P N V+ LL EV + S + K +VFTG+L ++ R Sbjct: 597 IGPVVAAAVVEFFLEPHNSEEVDRLLAEVGTTA--PAAAKESPVTGKTIVFTGSLVRMSR 654 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+ LGA + +S+KTD+++ G GSKL KA+Q GV++++E + L+ Sbjct: 655 DEAEAMAEGLGARTAGTVSKKTDLVVAGPGAGSKLAKAEQFGVRVIDENGWFDLV 709 >gi|315634861|ref|ZP_07890143.1| NAD-dependent DNA ligase LigA [Aggregatibacter segnis ATCC 33393] gi|315476413|gb|EFU67163.1| NAD-dependent DNA ligase LigA [Aggregatibacter segnis ATCC 33393] Length = 671 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 247/708 (34%), Positives = 392/708 (55%), Gaps = 45/708 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 ++++ L + + YH+ Y+ P I DSEYD L + A+ P+L + + P Sbjct: 4 SIQQQIDDLRKTLRYHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELITA---DSPT 60 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G ++ H +P LSL+ ++ E+ F+ RI + F EPK+D Sbjct: 61 QRVGARPLSEFAQIKHELPMLSLDNAFSDEEFLAFVKRIQDRLVLVP-EPLTFCCEPKLD 119 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194 G ++I Y G AA RGDG +GED++ IR I IP L + N P +EVRGEV++ Sbjct: 120 GLAVSILYVNGVLTQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMP 179 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF-AK 252 + F LN+ + G K +ANPRNAA+G LR+L+P ++ F + +G I Sbjct: 180 HDGFERLNERALEQGEKTFANPRNAAAGSLRQLDPKITSQRPLVFNAYSIGVAQGIDLPP 239 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 +E LQ ++ +G PVN+ +R + ++++Y M RS+L YDIDG V KV++ LQ Sbjct: 240 THFERLQWLKSIGVPVNSEIRLCDGVENVLNFYRTMMEKRSSLGYDIDGTVLKVNDIELQ 299 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+L+PV + G ++NAT Sbjct: 300 QRLGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLQPVFVAGVTVSNAT 359 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I+ L +I +GD V+++RAG+VIP+++ ++ + R +A+ FP+ Sbjct: 360 LHNGDEIERL-----------NIAIGDTVIIRRAGDVIPQIIGVVHDRRPANARQIVFPT 408 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S +VR A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++ Sbjct: 409 RCPVCDSLIVRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGAKLIE 462 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 E + PAD+F L T + + G S N S+ K ++ +L R Sbjct: 463 QLVDRE----LVHTPADLFKL------DLTTLTRLERMGPKSAENALASLEKAKHTTLAR 512 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LGIR VG A +LA ++ + + D L +VP VG+++A I Sbjct: 513 FIFALGIRDVGEATALNLANHFKTLEALQNA----------DLEQLQQVPDVGEVVANRI 562 Query: 613 VEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F++ N+ V L+ + + + + K +V TGTL ++ R+ A+ + Sbjct: 563 FVFWREEHNVAVVNDLIAQGVHWETVEVQDVKENPFKGKTVVLTGTLSQMGRNDAKALLQ 622 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 QLGA VS +S KTD +I G+ GSKL KA +LGV++++EE+FL + Sbjct: 623 QLGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFLAWVN 670 >gi|325576592|ref|ZP_08147310.1| NAD-dependent DNA ligase LigA [Haemophilus parainfluenzae ATCC 33392] gi|325161155|gb|EGC73270.1| NAD-dependent DNA ligase LigA [Haemophilus parainfluenzae ATCC 33392] Length = 675 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 253/710 (35%), Positives = 400/710 (56%), Gaps = 45/710 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +I ++++ +L ++ ++ Y+ P I D+EYD L + A+ A P+L + + Sbjct: 7 NIMSLQQQIDTLRHDLRRYEYEYHVLDNPTIPDAEYDRLFHQLKALEAAHPELITA---D 63 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++G + ++ H IP LSL+ ++ E+ F+ RI + + F EP Sbjct: 64 SPTQRVGAKPLSGFAQIRHEIPMLSLDNAFSDEEFYAFVKRIEDRLIRLP-EPLTFCCEP 122 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEV 191 K+DG ++I Y G AA RGDG +GED++A IR I IP L N P +EVRGEV Sbjct: 123 KLDGLAVSILYVNGILTQAATRGDGATGEDITANIRTIRNIPLQLLMDNPPARLEVRGEV 182 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF 250 ++ F LN + + G K +ANPRNAA+G LR+L+P ++ +G+G + Sbjct: 183 FMPHAGFERLNQQALEKGEKTFANPRNAAAGSLRQLDPKITSKRPLVLNAYGIGIAEGVD 242 Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Y+ LQ ++ +G PVN +R N ++ +Y ++++ RS L YDIDG V K+++ Sbjct: 243 LPNTHYDRLQWLKSIGIPVNPEIRLCNGTDEVLDFYRDIQNKRSALGYDIDGTVLKINDI 302 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG +++PRW I++KF ++ TRL D++ Q+GRTG +TPVA+LEPV + G ++ Sbjct: 303 ALQEKLGFISKAPRWAIAYKFPAQEELTRLNDVEFQVGRTGAITPVAKLEPVFVAGVTVS 362 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L DI +GD V+++RAG+VIP+++ ++ + R DA+P Sbjct: 363 NATLHNGDEIERL-----------DIAIGDTVVIRRAGDVIPQIIGVLHDRRPADARPIV 411 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP CP+C S +VR A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 412 FPKTCPVCDSAIVRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGK 465 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ E + PAD+F L T + + G S N S+ K +N + Sbjct: 466 LIEQLVDRE----LVHTPADLFKL------DLTTLTRLERMGAKSAENALASLEKAKNTT 515 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RFIF+LGIR VG A +LA ++ + + D +L +VP VG+++A Sbjct: 516 LARFIFALGIREVGEATALNLANHFKTLEALQNA----------DLEALQQVPDVGEVVA 565 Query: 610 QAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 I+ F+ P N+ V L+ + ++ + + K +V TGTL ++ R++A+ Sbjct: 566 NRILAFWHEPHNVAVVNDLIAQGVRWETVETKEVAENRFKGKTVVLTGTLTQMGRNEAKA 625 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +GA VS +S KTD +I GD GSKL KAQ+LGV ++ EE+FL + Sbjct: 626 LLQDMGAKVSGSVSAKTDFVIAGDAAGSKLTKAQELGVTVLTEEEFLAQI 675 >gi|308187689|ref|YP_003931820.1| DNA ligase [Pantoea vagans C9-1] gi|308058199|gb|ADO10371.1| DNA ligase [Pantoea vagans C9-1] Length = 672 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 244/713 (34%), Positives = 390/713 (54%), Gaps = 49/713 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + ++ L + +H+ Y+ P + D+EYD L R + PDL P+ Sbjct: 1 MKSVQDHITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRQLEEEHPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G +V H +P LSL+ ++ F R+ + DD I + E K Sbjct: 58 PTQRVGAAPLTVFEQVRHEVPMLSLDNAFDEATFMAFNKRVQDRLKSSDD--ITYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE G V AA RGDG +GE+++A +R I IP L + P +EVRGE++ Sbjct: 116 LDGAAVSLMYENGLLVRAATRGDGTTGENITANVRTIRAIPLRLKGDNIPARLEVRGEIF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 +++ F LN+E K +ANPRNAA+G LR+L+P R L FF +G G Sbjct: 176 MTQRGFEKLNEEARRTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEM 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 LQ+ + G PV++ ++ + +++Y +++ R L +DIDG+V KVD + Sbjct: 236 PHSHMGRLQQFKAWGLPVSDRIKLVHNAEEALAFYRDIEQQRPNLGFDIDGVVIKVDSQA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW I+ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWAIAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GDRV+++RAG+VIP+VV++++ ER + + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDRVVIRRAGDVIPQVVNVVIAERPEETREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R + RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PAHCPVCGSEVERVEGE------SVTRCTGGLICGAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ D++ K ++ +L Sbjct: 459 IDQLVEKE----YVDTPADLFRLTA------GKLTGLDRMGPKSAQNIVDALEKAKSTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ Q D +LI VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAANLANHFGELQKVMDA----------DLEALIAVPDVGKVVAA 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + F + N + L ++ + + + S K +V TG+L ++ R A Sbjct: 559 HVRNFMEEESNREVIRQLTDDIGIHWPQVVVVKAEEIDSPFAGKTVVLTGSLSQMNRDDA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL Sbjct: 619 KAQLIALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLLD 671 >gi|167837047|ref|ZP_02463930.1| DNA ligase, NAD-dependent [Burkholderia thailandensis MSMB43] Length = 691 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 261/733 (35%), Positives = 395/733 (53%), Gaps = 56/733 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + + P + Q K + L E+ + YY +P + D+EYD L I Sbjct: 1 MARSPVEPPAS----QPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQQIEA 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 PDL P+ P ++GGE+ V H P LSL ++ +D+ F R+ K Sbjct: 57 EHPDLV---TPDSPTQRVGGEVAGGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDK 113 Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 D + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR + +IP Sbjct: 114 ATDLAGTVTEPVEYACELKFDGLAISLRYEGGRFVQASTRGDGTTGEDVTENIRTVRSIP 173 Query: 175 RVLSLNIPEII-EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DI 232 L + +VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ Sbjct: 174 LTLKGRHVPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITA 233 Query: 233 TRYLNFFVHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 +R L+FF +G+G +L LG PVN G++ +++ + Sbjct: 234 SRPLSFFAYGIGVLDGVEMPGTHSGLLDWYETLGLPVNRERAVVRGAAGLLGFFHSVGER 293 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R +LPYDIDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV +++ R DA+ F P+ CP C SR+ R + A RCTGGL C AQ+ + Sbjct: 403 EVVSAVLDRRPADAREFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQA 456 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L HF R A +I+GLG++ +D + +R PAD+F L + + + F Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFA 506 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S Sbjct: 507 EKSAQNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPVMDA-------- 558 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIE 648 L+ V VG I+A++I +F+ N +E L + + + + Sbjct: 559 --SIDELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAKGKVTWPEGPPAPRAPQGVLA 616 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ + Sbjct: 617 GKTVVLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPV 676 Query: 709 MNEEQFLFLLQQY 721 ++E LL+ + Sbjct: 677 LDEAGMHKLLEGH 689 >gi|134296034|ref|YP_001119769.1| DNA ligase [Burkholderia vietnamiensis G4] gi|166215568|sp|A4JF81|DNLJ_BURVG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|134139191|gb|ABO54934.1| DNA ligase, NAD-dependent [Burkholderia vietnamiensis G4] Length = 691 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 253/713 (35%), Positives = 384/713 (53%), Gaps = 52/713 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L ++ + YY +P + D+EYD L + P+L P+ P ++ Sbjct: 15 ARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLEADHPELV---TPDSPTQRV 71 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132 GG + V H P LSL ++ +D+ F R+ K D + + + E Sbjct: 72 GGAVASGFTPVVHDAPMLSLNNGFSDDDIVAFDKRVADALDKPTDLAGSVTDPVEYACEL 131 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191 K DG I++RYE+G FV A+ RGDG +GEDV+ +R I +IP L P +++VRGEV Sbjct: 132 KFDGLAISLRYERGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAHVPALLDVRGEV 191 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249 + K DF LN+ A ++ +ANPRNAA+G LR+L+P R L+FF +G+G Sbjct: 192 LMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFSYGIGVLDGMP 251 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +L LG PVN G++ ++ ++ R +LPYDIDG+VYKV+ Sbjct: 252 MPDTHSALLDWYEALGLPVNRERAVVRGAQGLLEFFRKVGERRESLPYDIDGVVYKVNRR 311 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +T Sbjct: 312 DEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVT 371 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNED ++ +DIR+GD V+V+RAG+VIP+VV ++ R DA F Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGALLERRPVDAAEFV 420 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ Sbjct: 421 MPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 474 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + +R PAD+F L + + F + S NL DS+ K ++ + Sbjct: 475 IIDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTT 524 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RFI+ LGIRHVG A+ LAK++ S L+ V VG I+A Sbjct: 525 LARFIYGLGIRHVGESTAKDLAKHFGSLDPIMDA----------SIEELLEVNDVGPIVA 574 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++I +F+ N ++ L + K + K +V TGTL + R A Sbjct: 575 ESIHQFFAEEHNRTVIDQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPTLTRDAA 634 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ LL+ Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 687 >gi|300724062|ref|YP_003713378.1| DNA ligase [Xenorhabdus nematophila ATCC 19061] gi|297630595|emb|CBJ91260.1| DNA ligase [Xenorhabdus nematophila ATCC 19061] Length = 658 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 241/699 (34%), Positives = 381/699 (54%), Gaps = 49/699 (7%) Query: 29 SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88 +H+ Y+ P I D+EYD L R A+ P+ + + P +IG + + Sbjct: 2 RHHEYLYHVMDAPEIPDAEYDRLMRELKALEEQHPEWVTA---DSPTQRIGATPLSAFEQ 58 Query: 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148 V H IP LSL+ +++ E F R+ KD F E K+DG +++ YE G+ Sbjct: 59 VRHEIPMLSLDNVFDEESYLAFDKRVRDRL--KDSQDWVFCCELKLDGLAVSLLYENGEL 116 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG +GE+++A +R I IP L P +E+RGEV+I + F LN+E Sbjct: 117 VQAATRGDGTTGENITANVRTIHAIPLRLKGENIPARVEIRGEVFIKQTGFEKLNEEARR 176 Query: 208 VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSEIFAKGQYEMLQKMRCLG 265 G K +ANPRNAA+G LR+L+P R L F+ +G+G + Y L + + G Sbjct: 177 TGNKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGIGVQEGGALPASHYARLMQFKEWG 236 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 PV++ V+ ++ +Y +++ R TL +DIDG+V KVD LQ++LG A++PRW Sbjct: 237 LPVSDKVKLCLGTQQVIDFYQDIEQQRPTLGFDIDGVVVKVDSLELQERLGFVAKAPRWA 296 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 + KF ++ T + D++ Q+GRTG +TPVARLEPV++ G ++NATLHN D I+ L Sbjct: 297 TAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVSVAGVTVSNATLHNADEIERL--- 353 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 +R+GD V+++RAG+VIP+VV +I R ++ FP CP+C S + R Sbjct: 354 --------GLRIGDTVIIRRAGDVIPQVVGVIHERRPAESLEVIFPQHCPVCGSDIERVE 405 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 A RCTGGL C AQ+ E L+HFVSR A +++G+G++ ++ E ++ Sbjct: 406 GE------AVARCTGGLFCGAQRKEALRHFVSRRAMDVDGMGEKIIEQLVDKE----YVK 455 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 PAD+F L K+ + G S N+ +++ K R + RFI+SLGIR VG Sbjct: 456 TPADLFRLTA------GKLTGLERMGPKSAQNVINALEKARKTTFARFIYSLGIREVGET 509 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 A +L ++ + + D +LI V VG I+A +V F+ P N + Sbjct: 510 TAANLVSHFGTLEKLQAA----------DTEALIAVQDVGGIVASHVVNFFNEPHNQAVI 559 Query: 626 EALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 + L+ + E + K +V TG+L ++ R +A++ + LGA V+ + Sbjct: 560 DDLVNNIGIHWESAESPNLGEIDGPFAGKTVVLTGSLNRLSRDEAKDKLAALGAKVTGSV 619 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 S+KTD++I G+ GSKL KA +LG+ +++E++ + LL++ Sbjct: 620 SKKTDLVIAGEAAGSKLAKANELGIPVIDEDEMIRLLRE 658 >gi|254252054|ref|ZP_04945372.1| NAD-dependent DNA ligase [Burkholderia dolosa AUO158] gi|124894663|gb|EAY68543.1| NAD-dependent DNA ligase [Burkholderia dolosa AUO158] Length = 691 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 257/713 (36%), Positives = 385/713 (53%), Gaps = 52/713 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L ++ + YY +P + D+EYD L + P+L P+ P ++ Sbjct: 15 ARAAWLRDQLERANHAYYVLDQPDLPDAEYDRLFLELQQLEADHPELV---TPDSPTQRV 71 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132 GG + V H P LSL + +D+ F R+ K D + + + E Sbjct: 72 GGAVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALAKTTDLAGSVTDPVEYACEL 131 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191 K DG I++RYE G FV AA RGDG +GEDV+ +R I +IP L P +++VRGEV Sbjct: 132 KFDGLAISLRYENGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGRTVPAVLDVRGEV 191 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249 + K DF LN+ A G++ +ANPRNAA+G LR+L+P R L+FF +G+G Sbjct: 192 LMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMP 251 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +L LG PVN + G+++++ + R LPYDIDG+VYKV+ Sbjct: 252 MPDTHSALLDWYEALGLPVNRERAVVHGADGLLAFFRRVGEKRDALPYDIDGVVYKVNRR 311 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +T Sbjct: 312 DEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVT 371 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA F Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFV 420 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ Sbjct: 421 MPTECPVCGSKIERLPDE------AIARCTGGLVCPAQRKQALWHFAQRRALDIDGLGEK 474 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + +R PAD+F L + + + F + S NL DS+ K ++ + Sbjct: 475 IIDQLVE----LNLVRTPADLFNL------GFSTLAELDRFAEKSAQNLLDSLEKAKHTT 524 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RFI+ LGIRHVG A+ LAK++ S L+ V VG I+A Sbjct: 525 LARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA----------SIDELLEVNDVGPIVA 574 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++I +F+ N +E L + K + K +V TGTL + R A Sbjct: 575 ESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTIVLTGTLPNLTRDAA 634 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + GA V+ +S+KTD +I G GSKL KA++LG+ +++E+ LL+ Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVIAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 687 >gi|262394922|ref|YP_003286776.1| DNA ligase [Vibrio sp. Ex25] gi|262338516|gb|ACY52311.1| DNA ligase [Vibrio sp. Ex25] Length = 690 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 253/714 (35%), Positives = 392/714 (54%), Gaps = 48/714 (6%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 +S E + L L++ + YH YY P I D+EYD L R I PDL Sbjct: 20 TMS-ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITV-- 76 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++GG+ + +VTH +P LSL+ ++ +L F R + + Sbjct: 77 -DSPSQRVGGQPLSAFSQVTHEVPMLSLDNAFDDSELDSFHKRAQERVGSQSVK--EYCC 133 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189 EPK+DG +++ YE G V AA RGDG +GE+++ +R I IP L N P +EVRG Sbjct: 134 EPKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLKLRGNDWPNRLEVRG 193 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE 248 EV++ K F LN+ G K + NPRNAA+G LR+L+ +R L+F+ + +G Sbjct: 194 EVFMPKAGFEKLNELARKKGEKIFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQG 253 Query: 249 -IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 A YE +++ G P+ ++ + + +YY ++ R LPY+IDG+V K+D Sbjct: 254 AELAASHYERFLQIKSWGLPMCPETKRVESLADVKAYYQDILQRRDALPYEIDGVVIKID 313 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + ++Q++LG AR+PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEPV +GG Sbjct: 314 DIAVQERLGFVARAPRWAIAYKFPAQEEMTTLNEVEFQVGRTGAITPVAKLEPVFVGGVT 373 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN D I+ L +++GD V+++RAG+VIP+VV +I R A+ Sbjct: 374 VSNATLHNADEIERLQ-----------VKIGDHVVIRRAGDVIPQVVSVIKERRPETARD 422 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 FP+ CP+C S V R A RCTGGL C AQ+ + LKHFVSR A +++GLG Sbjct: 423 IIFPTQCPVCGSHVERIEGE------AVTRCTGGLVCQAQRKQALKHFVSRKALDVDGLG 476 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ E ++ PAD+F L S + + G S N+ +++ K + Sbjct: 477 DKVIEQLVDRE----MVKTPADLFKL------SAGILTVLDRMGPKSAQNIVNALEKSKE 526 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L RF++SLGIR VG A +LA ++ + + LI V +G + Sbjct: 527 TTLPRFLYSLGIREVGEATAANLAMHFKTLEAIQNANE----------EQLIEVQDIGAV 576 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +AQ I F+ +N V+ LL++ P I E+ +E K +V TGTL ++ R + Sbjct: 577 VAQHITTFFSEEQNQAVVKDLLEQGIHWPEINTTEQVGELPLEGKTVVLTGTLSQLGRTE 636 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + LGA V+ +S+KTDI+ G+N GSKL KAQ+LG++I E+ L L+ Sbjct: 637 AKEALQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELMN 690 >gi|167563194|ref|ZP_02356110.1| DNA ligase, NAD-dependent [Burkholderia oklahomensis EO147] Length = 691 Score = 577 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 260/733 (35%), Positives = 397/733 (54%), Gaps = 56/733 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + + P + Q K + L E+ + YY +P + D+EYD L + Sbjct: 1 MARSPVEPPAS----QPAKRAAWLRAELERANYAYYVLDQPELPDAEYDRLFVELQQVEA 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 PDL P P ++GGE+ V H P LSL ++ ED+ F R+ K Sbjct: 57 EHPDLV---TPESPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDEDVVAFDKRVADGLDK 113 Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 D + + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR + ++P Sbjct: 114 ATDLAGTVTDPVEYACELKFDGLAISLRYEDGRFVQASTRGDGTTGEDVTRNIRTVRSVP 173 Query: 175 RVLSLNIPEII-EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DI 232 L + +VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ Sbjct: 174 LKLKGKHVPRVLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITA 233 Query: 233 TRYLNFFVHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 +R L+FF +G+G +L LG PVN G++ +++ + Sbjct: 234 SRPLSFFAYGIGVLDGVDMPDTHGGLLDWYETLGLPVNRERAVVRGAAGLLDFFHAVGER 293 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R +LPYDIDG+VYKV+ Q++LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG Sbjct: 294 RESLPYDIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV +++ R DA+ F P+ CP C S + R + A RCTGGL C AQ+ + Sbjct: 403 EVVSAVLDRRPADAREFVMPTACPECGSGIERLPDE------AIARCTGGLFCPAQRKQA 456 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L HF R A +I+GLG++ +D + +R PAD+F L + + + F Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFA 506 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL DS++K ++ +L RFI++LGIRHVG A+ LAK++ S Sbjct: 507 EKSAQNLIDSLDKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDA-------- 558 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIE 648 +L+ V VG I+A++I +F+ N +E L + + + Sbjct: 559 --SIEALLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPRAPQGVLA 616 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ + Sbjct: 617 GKTVVLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPV 676 Query: 709 MNEEQFLFLLQQY 721 ++EE LL+ + Sbjct: 677 LDEEGMHKLLEGH 689 >gi|167570377|ref|ZP_02363251.1| DNA ligase, NAD-dependent [Burkholderia oklahomensis C6786] Length = 691 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 261/733 (35%), Positives = 398/733 (54%), Gaps = 56/733 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + + P + Q K + L E+ + YY +P + D+EYD L + Sbjct: 1 MARSPVEPPAS----QPAKRAAWLRAELERANYAYYVLDQPELPDAEYDRLFVELQQVEA 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 PDL P P ++GGE+ V H P LSL ++ ED+ F R+ K Sbjct: 57 EHPDLV---TPESPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDEDVVAFDKRVADGLDK 113 Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 D + + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR + ++P Sbjct: 114 ATDLAGTVTDPVEYACELKFDGLAISLRYEDGRFVQASTRGDGTTGEDVTRNIRTVRSVP 173 Query: 175 RVLSLNIPEII-EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DI 232 L + +VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ Sbjct: 174 LKLKGKHVPRVLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITA 233 Query: 233 TRYLNFFVHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 +R L+FF +G+G +L LG PVN G++ +++ + Sbjct: 234 SRPLSFFAYGIGVLDGVDMPDTHGGLLDWYETLGLPVNRERAVVRGAAGLLDFFHAVGER 293 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R +LPYDIDG+VYKV+ Q++LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG Sbjct: 294 RESLPYDIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV +++ R DA+ F P+ CP C SR+ R + A RCTGGL C AQ+ + Sbjct: 403 EVVSAVLDRRPADAREFVMPTACPECGSRIERLPDE------AIARCTGGLFCPAQRKQA 456 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L HF R A +I+GLG++ +D + +R PAD+F L + + + F Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFA 506 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL DS++K ++ +L RFI++LGIRHVG A+ LAK++ S Sbjct: 507 EKSAQNLIDSLDKAKHTTLSRFIYALGIRHVGESTAKDLAKHFGSLDPIMDA-------- 558 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIE 648 +L+ V VG I+A++I +F+ N +E L + + + Sbjct: 559 --SIEALLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPRAPQGVLA 616 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ + Sbjct: 617 GKTVVLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPV 676 Query: 709 MNEEQFLFLLQQY 721 ++EE LL+ + Sbjct: 677 LDEEGMHKLLEGH 689 >gi|113460523|ref|YP_718587.1| NAD-dependent DNA ligase LigA [Haemophilus somnus 129PT] gi|122945214|sp|Q0I2H6|DNLJ_HAES1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|112822566|gb|ABI24655.1| DNA ligase (NAD+) [Haemophilus somnus 129PT] Length = 673 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 261/707 (36%), Positives = 400/707 (56%), Gaps = 45/707 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++++ L Q + +H+ Y+ P I DSEYD L + A+ +P+ A N P Sbjct: 8 IKQQIEELRQLLRHHEYQYHVLDNPQIPDSEYDRLFHQLKALEQQYPEYA---SENSPTQ 64 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G + + +V H IP LSL+ ++ ED F+ RI +S+ F EPK+DG Sbjct: 65 RVGAKPLSNFAQVKHDIPMLSLDNAFSDEDFFAFVKRIQDRL-IHVHHSLTFCCEPKLDG 123 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195 ++I Y G+ V AA RGDG +GED++A IR I IP L + N P +EVRGEV++S+ Sbjct: 124 LAVSILYINGQLVQAATRGDGTTGEDITANIRTIRNIPLQLLTDNPPARLEVRGEVFMSQ 183 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS-EIFAKG 253 F LN +A G K +ANPRNAA+G LR+L+P R L +G+G Sbjct: 184 AGFEKLNKTALAKGEKTFANPRNAAAGSLRQLDPKITGQRPLMLNAYGIGIAEGVELPDT 243 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 + LQ ++ +G PVNN ++ + ++ +Y +K RS+L YDIDG V K+++ LQ+ Sbjct: 244 HFARLQWLKSIGIPVNNEIQLCHGIEKVLDFYRTIKQKRSSLGYDIDGTVLKINDIDLQQ 303 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 QLG +++PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEPV + G ++NATL Sbjct: 304 QLGFISKAPRWAIAYKFPAQEELTILNNVEFQVGRTGAITPVAKLEPVFVAGVTVSNATL 363 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I L DI +GD V+V+RAG+VIP+++ ++ R +A+ FPS Sbjct: 364 HNGDEIARL-----------DIAIGDTVIVRRAGDVIPQIIGVLHERRPENAKSIIFPSN 412 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S + + A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++ Sbjct: 413 CPVCDSVISKIEGE------AVARCTGGLICAAQRKEALKHFVSRKAMDIDGIGAKLIEQ 466 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + E + PAD+F L + + + G S N S+ K + +L RF Sbjct: 467 LVERE----LVHTPADLFKLDQ------VTLMRLERMGAKSAENALASLAKAKKTTLARF 516 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGIR VG A +LA ++ + + F + L +V VG+++A+ I Sbjct: 517 IFALGIREVGETTALNLATHFKTLEAFENAT----------FEQLQKVQDVGEVVAKRIR 566 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F+ P N+ V+ L+ + K V + ++ K +V TGTL K+ R +A+EY+ Q Sbjct: 567 SFWSEPHNVAVVKDLIAQGIHWDDVEVKEVRDNPLKGKTVVLTGTLTKMGRSEAKEYLLQ 626 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LG VS +S KTD +I G++ GSKL KA +LG+ I++E +FL LL Sbjct: 627 LGCKVSGSVSSKTDFVIAGESAGSKLTKATELGINILSENEFLALLA 673 >gi|170703080|ref|ZP_02893902.1| DNA ligase, NAD-dependent [Burkholderia ambifaria IOP40-10] gi|170132009|gb|EDT00515.1| DNA ligase, NAD-dependent [Burkholderia ambifaria IOP40-10] Length = 691 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 256/713 (35%), Positives = 385/713 (53%), Gaps = 52/713 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L ++ + YY +P + D+EYD L + PDL P+ P ++ Sbjct: 15 ARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLETDHPDLV---TPDSPTQRV 71 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132 GGE+ V H P LSL + ED+ F R+ K D + + + E Sbjct: 72 GGEVAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALGKTTDLAGSVTDPVEYACEL 131 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191 K DG I++RYE G FV A+ RGDG +GEDV+ +R I +IP L P +++VRGEV Sbjct: 132 KFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAHVPALLDVRGEV 191 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249 + K DF LN+ A ++ +ANPRNAA+G LR+L+P R L+FF +G+G Sbjct: 192 LMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMP 251 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +L G PVN G++ ++ ++ R +LPYDIDG+VYKV+ Sbjct: 252 MPDTHSALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEKRESLPYDIDGVVYKVNRR 311 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +T Sbjct: 312 DEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVT 371 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA F Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGALLDRRPDDAAEFV 420 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ Sbjct: 421 MPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 474 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + +R PAD+F L + + F + S NL DS+ K ++ + Sbjct: 475 IIDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTT 524 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RFI+ LGIRHVG A+ LAK++ S L+ V VG I+A Sbjct: 525 LARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA----------SIEELLEVNDVGPIVA 574 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++I +F+ N +E L + K + K +V TGTL + R A Sbjct: 575 ESIHQFFAEEHNRTVIEQLRAPGKVTWAEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAA 634 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E++ LL+ Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEDELHQLLE 687 >gi|114570616|ref|YP_757296.1| DNA ligase [Maricaulis maris MCS10] gi|122315591|sp|Q0AMX9|DNLJ_MARMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|114341078|gb|ABI66358.1| DNA ligase, NAD-dependent [Maricaulis maris MCS10] Length = 701 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 282/717 (39%), Positives = 425/717 (59%), Gaps = 25/717 (3%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 L ++ L+ +AR E + L +EI+ HD YYQ P I D+ YDAL+R+ +AI FP Sbjct: 4 LKDVDQLTEAEARAEHARLAREIAGHDKAYYQSDAPKISDAAYDALRRKLEAIEVRFPQF 63 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 P ++G + ++ H++P LSL +N ED+ F+ RI RF + + Sbjct: 64 IDLL---SPTQRVGAVPSGKFGEIRHAVPMLSLGNAFNDEDVADFVGRIRRFLGLAESDV 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEI 184 + T EPKIDG ++RY GK V+ A RGDG +GEDV+ + + IP + P++ Sbjct: 121 VAVTAEPKIDGLSASLRYVGGKLVHGATRGDGQTGEDVTQNLLTLDDIPDTLPPGDWPDV 180 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGL 243 +EVRGEVY+S DF ALN+ I G+ Y NPRNAA+G LR+++P ++ FF + Sbjct: 181 VEVRGEVYMSHADFAALNERQIEAGKDAYKNPRNAAAGSLRQIDPKMTSQRPLRFFAYAW 240 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G+ SE + Q + + +GFPVN+ + + T +++ Y ++++ R+ L YDIDG+V Sbjct: 241 GEVSEPLSDTQMGAVARFGEMGFPVNDLMARCETVEALLAVYRDIEARRAGLGYDIDGVV 300 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YK D Q++LG AR+PRW I+HKF +QA+T L IDIQ+GRTG LTPVARL PV + Sbjct: 301 YKADRLDWQERLGFVARAPRWAIAHKFPAEQATTILEAIDIQVGRTGALTPVARLTPVTV 360 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++TNATLHN+D I+ +DIRVGD V+++RAG+VIP+VV ++ +R Sbjct: 361 GGVVVTNATLHNQDEIER-----------KDIRVGDTVVIQRAGDVIPQVVRVVDPDRPG 409 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + F FP+ CP+C S+ +R+ + KTGKL RCTGGL C AQ ERLKHFVSR AF+I Sbjct: 410 RGEAFDFPTECPVCGSQALREHDAKTGKLDVVRRCTGGLICGAQLKERLKHFVSRKAFDI 469 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI--ENILGFGDVSVTNLYDS 541 EGLG +Q++ F + I PA IFTL+ R + K + GFG+ S+ NL+ S Sbjct: 470 EGLGIKQIEAFQEE----GLITEPAHIFTLKARNEAGEIKPPLQEREGFGETSIRNLFTS 525 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I RR I+L RF+ +LGIRHVG + A+ Y S+ F N+ ++ + Sbjct: 526 IEDRRTITLARFLNALGIRHVGENTSALFARTYGSWAAFHAAAANLSD--EAVRAEMLGI 583 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G+ +A+ +++ N ++ L+ +++ N S + K +VFTG L+++ Sbjct: 584 DGIGNAAVEALEQYFTEAHNRDLLDRLVAQLTIEDAEAIAN-DSPVAGKTVVFTGALERM 642 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+ LGA V+ +S KTD ++ G GSK +KA +LGV+ + E+++ L+ Sbjct: 643 TRDEAKAKAQALGAKVAGSVSGKTDYLVAGPGAGSKAKKAAELGVETLTEDEWFDLI 699 >gi|269968476|ref|ZP_06182487.1| DNA ligase [Vibrio alginolyticus 40B] gi|269826910|gb|EEZ81233.1| DNA ligase [Vibrio alginolyticus 40B] Length = 690 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 252/714 (35%), Positives = 390/714 (54%), Gaps = 48/714 (6%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 +S E + L L++ + YH YY P I D+EYD L R I PDL Sbjct: 20 TMS-ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITV-- 76 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++GG+ + +VTH +P LSL+ ++ +L F R + + Sbjct: 77 -DSPSQRVGGQPLSAFSQVTHEVPMLSLDNAFDDSELDSFHKRAQERVGSQSVK--EYCC 133 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189 EPK+DG +++ YE G V AA RGDG +GE+++ +R I IP L N P +EVRG Sbjct: 134 EPKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLKLRGNDWPNRLEVRG 193 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE 248 EV++ K F LN+ G K + NPRNAA+G LR+L+ +R L+F+ + +G Sbjct: 194 EVFMPKAGFEKLNELARKKGEKIFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQG 253 Query: 249 -IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 A YE +++ G P+ ++ + + +YY ++ R LPY+IDG+V K+D Sbjct: 254 AELAASHYERFLQIKSWGLPMCPETKRVESLADVKAYYQDILQRRDALPYEIDGVVIKID 313 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + ++Q++LG AR+PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEPV +GG Sbjct: 314 DIAVQERLGFVARAPRWAIAYKFPAQEEMTTLNEVEFQVGRTGAITPVAKLEPVFVGGVT 373 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN D I+ L +++GD V+++RAG+VIP+VV +I R A+ Sbjct: 374 VSNATLHNADEIERLQ-----------VKIGDHVVIRRAGDVIPQVVSVIKERRPETARD 422 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 FP+ CP+C S V R A RC GGL C AQ+ + LKHFVSR A +++GLG Sbjct: 423 IVFPTQCPVCGSHVERIEGE------AVTRCMGGLVCQAQRKQALKHFVSRKALDVDGLG 476 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ E ++ PAD+F L S + + G S N+ +++ K + Sbjct: 477 DKVIEQLVDRE----MVKTPADLFKL------SAGILTVLDRMGPKSAQNIVNALEKSKE 526 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L RF++SLGIR VG A +LA ++ + LI V +G + Sbjct: 527 TTLPRFLYSLGIREVGEATAANLAMHFKTLGAIQNATE----------EQLIEVQDIGAV 576 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +AQ I F+ +N V+ LL++ P I E+ +E K +V TGTL ++ R + Sbjct: 577 VAQHITTFFSEEQNQAVVKDLLEQGIHWPEINTTEQVGELPLEGKTVVLTGTLSQLGRTE 636 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + LGA V+ +S+KTDI+ G+N GSKL KAQ+LG++I E+ L L+ Sbjct: 637 AKEALQALGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELMN 690 >gi|84516174|ref|ZP_01003534.1| DNA ligase [Loktanella vestfoldensis SKA53] gi|84509870|gb|EAQ06327.1| DNA ligase [Loktanella vestfoldensis SKA53] Length = 722 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 289/713 (40%), Positives = 421/713 (59%), Gaps = 16/713 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I + L+ +A EL+ L Q ++ + Y++ P I D+ YDALK+R AI F +L Sbjct: 22 IAVADLTRAEAMVELARLAQTLAQANTAYHRNDTPEISDAAYDALKQRNAAIEARFRELK 81 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R+ + P +++G + KV H++ LSL ++ +D+ F R+ ++ D + Sbjct: 82 RA---DSPSDQVGAVVADGFGKVQHAVRMLSLGNAFSDDDVTDFDERLRKYLGLTADQPL 138 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 +T EPKIDG +++RYE G V AA RGDG GE+V+A I IP+ L+ P ++E Sbjct: 139 RYTAEPKIDGLSLSLRYEDGVLVQAATRGDGAVGENVTANACTIADIPQRLTGA-PAVLE 197 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245 VRGEVY+S +DF ALN G K +ANPRNAA+G LR+L+ R L FF + G Sbjct: 198 VRGEVYMSHDDFAALNARQADKGAKTFANPRNAAAGSLRQLDAGITAARPLRFFAYAWGA 257 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S A Q + ++ LGF N ++ +++ Y+ +++ R++L YDIDG+VYK Sbjct: 258 LSAPLAATQSGAIARLAELGFATNPLTATCDSPADLIAIYSGIEAQRASLGYDIDGVVYK 317 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ +LQ++LG R+ +PRW I+HKF + A T L IDIQ+GRTG L+PVARL PV +GG Sbjct: 318 VDDLALQQRLGFRSTTPRWAIAHKFPAELAWTVLDAIDIQVGRTGALSPVARLVPVTVGG 377 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHNEDYI G G+ +R GRDIRVGD V V RAG+VIPK+ D+ R A Sbjct: 378 VVVSNATLHNEDYIAGRGGDGQPIRQGRDIRVGDWVQVYRAGDVIPKIKDVDSARRPAGA 437 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ FP CP C S +RD A RCTGG+ C AQ +ERLKHFVSR AF+IEG Sbjct: 438 TPYIFPDTCPECGSPAIRDPG------DAVRRCTGGMICPAQAVERLKHFVSRAAFDIEG 491 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG +Q++ F I P DIFTL+ R +++N G+G S NL+ +I+ + Sbjct: 492 LGAKQVEQFHAD----GWITTPVDIFTLRARYGQGLQQLKNREGWGAKSADNLFAAIDDK 547 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R I+L R I++LGIRHVG A LA +Y S+ FA + W +L + VG Sbjct: 548 RAIALNRLIYALGIRHVGESSAALLANHYGSWAGFATAMQAAHIGQGPAWDALTSIDGVG 607 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++A +++ QNP ++ AL+ ++ + S + +VFTGTL+K+ R + Sbjct: 608 AVMATSLITTLQNPSEAASIAALVAQLDVQDAPKIAS-DSPVSGLTVVFTGTLEKMTRAE 666 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ LGA V+ +S KTDI++ G GSK KA+ LG++ M+E+ +L L+ Sbjct: 667 AKARAESLGAKVAGSVSAKTDILVAGPGAGSKAAKAEALGIRTMDEDGWLALI 719 >gi|294504743|ref|YP_003568805.1| DNA ligase [Yersinia pestis Z176003] gi|262362805|gb|ACY59526.1| DNA ligase [Yersinia pestis D106004] gi|262366729|gb|ACY63286.1| DNA ligase [Yersinia pestis D182038] gi|294355202|gb|ADE65543.1| DNA ligase [Yersinia pestis Z176003] Length = 656 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 242/697 (34%), Positives = 392/697 (56%), Gaps = 47/697 (6%) Query: 29 SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88 +H+ Y+ P I D+EYD + ++ + P+L + + P ++G + + Sbjct: 2 RHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTN---DSPTQRVGAAPLDAFEQ 58 Query: 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148 V H +P LSL+ +++ E F R++ K + F E K+DG +++ YE G+ Sbjct: 59 VKHEVPMLSLDNVFDEESYLAFDKRVHDRL--KTAEPLTFCCELKLDGLAVSLLYENGEL 116 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG +GE+++A +R I IP L + P +EVRGEV++ + F LN+E Sbjct: 117 VRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVFMPQAGFEQLNEEARR 176 Query: 208 VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLG 265 G K +ANPRNAA+G LR+L+P R L FF +G+G + + L + + G Sbjct: 177 KGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGELPRSHIQCLMQFKAWG 236 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 PV+ V+ ++++Y +++ R+ L +DIDG+V KVD+ +LQ+QLG AR+PRW Sbjct: 237 LPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLALQEQLGFVARAPRWA 296 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++NATLHN D I+ L Sbjct: 297 TAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIERL--- 353 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 +R+GD V+V+RAG+VIP+VV +++ +R D + +FPS CP+C S + R Sbjct: 354 --------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITFPSQCPVCGSDIERVE 405 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 A RCTGGL C+AQ+ E LKHFVSR A +++G+G + ++ + + + Sbjct: 406 GE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQ----YVE 455 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 PAD+F L K+ + G S NL ++ K + + RF+++LGIR VG Sbjct: 456 NPADLFQLTA------GKLTGLDRMGPKSAQNLIAALEKAKQTTFARFLYALGIREVGEA 509 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 A +LA ++ + N D +L VP VG+++A+ ++ F N + Sbjct: 510 TAANLAAHFRTLDNLRAA----------DIETLKSVPDVGEVVAKHVMNFLSEEHNQKVI 559 Query: 626 EALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 E L K VS + + S K +V TG+L + R +A++ +T LGA VS +S+ Sbjct: 560 EELEKVVSWPEPQQIVVEESDSPFAGKTVVLTGSLTILSRDEAKDRLTALGAKVSGSVSK 619 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 KT ++I G+ GSKL KAQ+LG+K+++E + + LL + Sbjct: 620 KTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLLGE 656 >gi|91225892|ref|ZP_01260861.1| DNA ligase [Vibrio alginolyticus 12G01] gi|91189542|gb|EAS75818.1| DNA ligase [Vibrio alginolyticus 12G01] Length = 670 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 252/713 (35%), Positives = 389/713 (54%), Gaps = 48/713 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E + L L++ + YH YY P I D+EYD L R I PDL Sbjct: 1 MS-ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITV--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG+ + +VTH +P LSL+ ++ +L F R + E Sbjct: 57 DSPSQRVGGQPLSAFSQVTHEVPMLSLDNAFDDSELDSFHKRAQERVGSLSVK--EYCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 PK+DG +++ YE G V AA RGDG +GE+++ +R I IP L N P +EVRGE Sbjct: 115 PKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLKLRGNDWPNRLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE- 248 V++ K F LN+ G K + NPRNAA+G LR+L+ +R L+F+ + +G Sbjct: 175 VFMPKAGFEKLNELARKKGEKIFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGA 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 A YE +++ G P+ ++ + + +YY ++ R LPY+IDG+V K+D+ Sbjct: 235 ELAASHYERFLQIKSWGLPMCPETKRVESLADVKAYYQDILQRRDALPYEIDGVVIKIDD 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 ++Q++LG AR+PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEPV +GG + Sbjct: 295 IAVQERLGFVARAPRWAIAYKFPAQEEMTTLNEVEFQVGRTGAITPVAKLEPVFVGGVTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I+ L +++GD V+++RAG+VIP+VV +I R A+ Sbjct: 355 SNATLHNADEIERLQ-----------VKIGDHVVIRRAGDVIPQVVSVIKERRPETARDI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CP+C S V R A RC GGL C AQ+ + LKHFVSR A +++GLG Sbjct: 404 VFPTQCPVCGSHVERIEGE------AVTRCMGGLVCQAQRKQALKHFVSRKALDVDGLGD 457 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E ++ PAD+F L S + + G S N+ +++ K + Sbjct: 458 KVIEQLVDRE----MVKTPADLFKL------SAGILTVLDRMGPKSAQNIVNALEKSKET 507 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF++SLGIR VG A +LA ++ + LI V +G ++ Sbjct: 508 TLPRFLYSLGIREVGEATAANLAMHFKTLGAIQNATE----------EQLIEVQDIGAVV 557 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 AQ I F+ +N V+ LL++ P I E+ +E K +V TGTL ++ R +A Sbjct: 558 AQHITTFFSEEQNQAVVKDLLEQGIHWPEINTTEQVGELPLEGKTVVLTGTLSQLGRTEA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + LGA V+ +S+KTDI+ G+N GSKL KAQ+LG++I E+ L L+ Sbjct: 618 KEALQALGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELMN 670 >gi|254247879|ref|ZP_04941200.1| NAD-dependent DNA ligase [Burkholderia cenocepacia PC184] gi|124872655|gb|EAY64371.1| NAD-dependent DNA ligase [Burkholderia cenocepacia PC184] Length = 691 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 257/713 (36%), Positives = 386/713 (54%), Gaps = 52/713 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L ++ + YY +P + D+EYD L R + P+L P+ P ++ Sbjct: 15 ARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELV---TPDSPTQRV 71 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132 GGE V H P LSL + ED+ F R+ K D + + + E Sbjct: 72 GGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKTTDLAGSVTDPVEYACEL 131 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191 K DG I++RYE+G FV AA RGDG +GEDV+ +R I +IP L P +++VRGEV Sbjct: 132 KFDGLAISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGEV 191 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249 + K DF LN+ A ++ +ANPRNAA+G LR+L+ R L+FF +G+G Sbjct: 192 LMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLDGMP 251 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +L LG PVN + G++ ++ ++ R +LPYDIDG+VYKV+ Sbjct: 252 MPDTHSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYDIDGVVYKVNRR 311 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q++LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +T Sbjct: 312 DEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVT 371 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA F Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFV 420 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ Sbjct: 421 MPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 474 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + +R PAD+F L + + F + S NL DS+ K ++ + Sbjct: 475 IIDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTT 524 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RFI+ LGIRHVG A+ LAK++ S L+ V VG I+A Sbjct: 525 LARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA----------SIEELLEVNDVGPIVA 574 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++I +F+ N +E L + K + K +V TGTL + R A Sbjct: 575 ESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAA 634 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ LL+ Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 687 >gi|170718864|ref|YP_001784038.1| NAD-dependent DNA ligase LigA [Haemophilus somnus 2336] gi|254781341|sp|B0USD9|DNLJ_HAES2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|168826993|gb|ACA32364.1| DNA ligase, NAD-dependent [Haemophilus somnus 2336] Length = 667 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 260/707 (36%), Positives = 400/707 (56%), Gaps = 45/707 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++++ L Q + +H+ Y+ P I DSEYD L + A+ +P+ A N P Sbjct: 2 IKQQIEELRQLLRHHEYQYHVLDNPQIPDSEYDRLFHQLKALEQQYPEYA---SENSPTQ 58 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G + + +V H IP LSL+ ++ ED F+ RI +S+ F EPK+DG Sbjct: 59 RVGAKPLSNFAQVKHDIPMLSLDNAFSDEDFFAFVKRIQDRL-IHVHHSLTFCCEPKLDG 117 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195 ++I Y G+ V AA RGDG +GED++A IR I IP L + N P +EVRGEV++S+ Sbjct: 118 LAVSILYINGQLVQAATRGDGTTGEDITANIRTIRNIPLQLLTDNPPTRLEVRGEVFMSQ 177 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS-EIFAKG 253 F LN +A G K +ANPRNAA+G LR+L+P R L +G+G Sbjct: 178 AGFEKLNKTALAKGEKTFANPRNAAAGSLRQLDPKITGQRPLMLNAYGIGIAEGVELPDT 237 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 + LQ ++ +G PVNN ++ + ++ +Y +K RS+L YDIDG V K+++ LQ+ Sbjct: 238 HFARLQWLKSIGIPVNNEIQLCHGIEKVLDFYRTIKQKRSSLGYDIDGTVLKINDIDLQQ 297 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 QLG +++PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEPV + G ++NATL Sbjct: 298 QLGFISKAPRWAIAYKFPAQEELTILNNVEFQVGRTGAITPVAKLEPVFVAGVTVSNATL 357 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I L DI +GD V+V+RAG+VIP+++ ++ R +A+ FP+ Sbjct: 358 HNGDEIARL-----------DIAIGDTVIVRRAGDVIPQIIGVLHERRPENAKSIIFPTN 406 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S + + A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++ Sbjct: 407 CPVCDSVISKIEGE------AVARCTGGLICAAQRKEALKHFVSRKAMDIDGIGAKLIEQ 460 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + E + PAD+F L + + + G S N S+ K + +L RF Sbjct: 461 LVERE----LVHTPADLFKLDQ------VTLMRLERMGAKSAENALASLAKAKKTTLARF 510 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGIR VG A +LA ++ + + F + L +V VG+++A+ I Sbjct: 511 IFALGIREVGETTALNLATHFKTLEAFENAT----------FEQLQKVQDVGEVVAKRIR 560 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F+ P N+ V+ L+ + K V + ++ K +V TGTL K+ R +A+EY+ Q Sbjct: 561 SFWSEPHNVAVVKDLIAQGIHWDNVEVKEVRDNPLKGKTVVLTGTLTKMGRSEAKEYLLQ 620 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LG VS +S KTD +I G++ GSKL KA +LG+ I++E +FL LL Sbjct: 621 LGCKVSGSVSSKTDFVIAGESAGSKLTKATELGINILSENEFLALLA 667 >gi|332798609|ref|YP_004460108.1| DNA ligase [Tepidanaerobacter sp. Re1] gi|332696344|gb|AEE90801.1| DNA ligase [Tepidanaerobacter sp. Re1] Length = 675 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 254/720 (35%), Positives = 389/720 (54%), Gaps = 51/720 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + I QA + L + I YH+ YY P I D+EYD L R ++ FP L P Sbjct: 1 MDIVQAENRIKELRESIDYHNYRYYVLDNPEITDAEYDKLMRELISLESQFPQLI---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GGE + KVTH P +SL ++ E+LR F R+ N + + +E Sbjct: 58 DSPSQRVGGEPLEAFKKVTHREPMISLADAFSEEELRDFNRRVTENVG----NQVEYVVE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVR 188 KIDG +++ YE G V AA RGDG GEDV+ ++ I ++P + IP +IEVR Sbjct: 114 LKIDGLAVSLTYENGLLVTAATRGDGVVGEDVTQNVKTIKSVPLRLNIQKDKIPMVIEVR 173 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE+Y+SK F LN+E +G +ANPRNAA+G +R+L+ R L+ F++ LG Sbjct: 174 GEIYLSKEGFKKLNEEREEMGLPTFANPRNAAAGSIRQLDSKITAKRPLSTFMYALGYVE 233 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 I E+L+ + GF VN ++ N F ++ Y K R +LPY+IDG+V KV+ Sbjct: 234 GIEFNTHLEVLEFYKACGFKVNPHIKSFNNFDDVIDYCMSWKEKRHSLPYEIDGMVIKVN 293 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 QK LG A++PRW I++KF +Q + + DI + +GRTG+LTP A L PV I G+ Sbjct: 294 SLHFQKILGSTAKTPRWAIAYKFPAEQKISVIEDIVVSVGRTGVLTPNAVLTPVQIAGST 353 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHNEDYIK +DI +GD V+V++AG++IP+VV +I +R + + Sbjct: 354 VSRATLHNEDYIK-----------EKDIHIGDSVIVQKAGDIIPEVVAVIKEKRTGNEKE 402 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P CP C S V+R A+RCTG +C AQ R+ HF SRDA +I GLG Sbjct: 403 FKMPHRCPECGSEVIRLPGE------VAYRCTGV-SCPAQIRRRIIHFASRDAMDIRGLG 455 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + I+ +DI+ L++ + + G+ S NL +I + Sbjct: 456 PAIVSLLLSEN----LIKDVSDIYFLKKE------ALIPLERMGEKSANNLIKAIENSKK 505 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 L R +++LGI +G++ + +LA+ + S + LI++P +GD Sbjct: 506 QPLNRLVYALGIPLIGSKASLTLAQEFKSMDRLQNAT----------YEELIKIPEIGDK 555 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +A++I+ F++ + + L + + E+ +EN V TG L+K R KAQ Sbjct: 556 MAESIIAFFKQEQTKALITRLKEAGVNMLYAKEEIGPKPLENLTFVLTGALEKYSRSKAQ 615 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL--QQYNTTL 725 E + LG V+ +S+KTD ++VG +PGSK KA +LGVKI++E+QF ++ Q T++ Sbjct: 616 ELIENLGGKVTGSVSKKTDYVVVGKDPGSKYNKALELGVKILDEQQFEEMISNAQAETSI 675 >gi|332970057|gb|EGK09055.1| NAD-dependent DNA ligase LigA [Desmospora sp. 8437] Length = 670 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 233/715 (32%), Positives = 379/715 (53%), Gaps = 53/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + ++A + + +L +EI HD Y+ ++P+I D EYDA+ R + P+L P Sbjct: 1 MERKEAEQRIEALRREIHEHDHRYHVLNQPVISDQEYDAMMRELLGLEQEHPELV---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GGE KV H+ P LSL +N E+L++F RI R + + + + E Sbjct: 58 DSPSQRVGGEPLPYFEKVRHTQPMLSLANAFNFEELQEFDRRIRR---LAEVDGVDYVCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG ++IRYE+G V A RGDG +GE+++ ++ I ++P L + +EVRGE Sbjct: 115 LKIDGLAVSIRYEEGVMVRGATRGDGTTGENITQNLKTIRSLPLRLRDAV--TLEVRGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249 ++ + +F +N + + G +ANPRNAA+G LR+L+P R L+ F++G+G+ Sbjct: 173 FLPRKEFERINRQKESRGETLFANPRNAAAGALRQLDPKLTAERALDIFLYGIGEIHGTE 232 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LG VN ++ + + + R L YDIDG+V KVD+ Sbjct: 233 TPGTHTESLDLLSRLGLKVNPDWVTVKGIDDVMQFIDHWREHREELGYDIDGIVIKVDDL 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 L+++LG A+SPRW I++KF ++ T L ++I++GRTG +TP A L+PV + G + Sbjct: 293 ELRERLGTTAKSPRWAIAYKFPAEEGVTVLRGVEIKVGRTGAVTPTALLDPVILAGTTVQ 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHNED+I+ ++I +GD V+VK+AG++IP+VV ++ R + +P+ Sbjct: 353 RATLHNEDFIR-----------EKEILLGDHVIVKKAGDIIPEVVGVVQERRTGEEKPYQ 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C S +VR A RC + + E + HFVSR A NIEGLG++ Sbjct: 402 MPTECPECGSELVRLEGE------VALRCINPQCPAQTR-EGIIHFVSRGAMNIEGLGEK 454 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F A +R PAD++ L+ + G SV NL +I + + S Sbjct: 455 VVTQLFN----ADLVRGPADLYDLKAEDL------LPLERMGKKSVENLLAAIEESKQNS 504 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +E+ IF LGIR VGA+ A LA+++ + D L V +G +A Sbjct: 505 VEKLIFGLGIRFVGAKGALILAQHFGGLEAIMAA----------DREELEAVDEIGPKMA 554 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRH 664 ++I ++ P + L + + + S K +V TGTL+ + R Sbjct: 555 ESIETYFDKPEVKETLRRLEAAGVNMMYKGPAPVQRGDSDSPFAGKTVVLTGTLESMSRK 614 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A + + G V+ +S+ TD +I G+ GSKL+KA+ LGV +++E+ FL +L+ Sbjct: 615 EAADRIEAQGGKVTGSVSKNTDYVIAGEKAGSKLKKARDLGVDVVDEQAFLAMLE 669 >gi|307266289|ref|ZP_07547829.1| DNA ligase, NAD-dependent [Thermoanaerobacter wiegelii Rt8.B1] gi|306918667|gb|EFN48901.1| DNA ligase, NAD-dependent [Thermoanaerobacter wiegelii Rt8.B1] Length = 662 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 243/709 (34%), Positives = 383/709 (54%), Gaps = 49/709 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++ + L ++I+YH+ YY +P I D EYD L R + +P+ P+ P Sbjct: 2 EPKERIKELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEFK---TPDSPS 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GGE TH +P LSL ++ +LR F R+ + + +E KID Sbjct: 59 QRVGGEPLKEFEPFTHVVPMLSLANAFSEGELRDFDRRVREAVG-----DVEYVVELKID 113 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + YE G F + RGDG GE+V+ ++ I +IP L L + VRGEV++ + Sbjct: 114 GLSVELIYENGIFTVGSTRGDGIVGENVTQNLKTIKSIP--LRLKDDASLVVRGEVFMPR 171 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 F LN+E +G +ANPRNAA+G LR+L+P R L+ F+ L K K Sbjct: 172 TSFEKLNEEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQKIEGRKFKTH 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L+ ++ GF V ++ + ++ E++++R LPYDIDG V KV++ ++ Sbjct: 232 IETLEFLKEQGFKVIPIHKKCSNIDEVIKEIEEIRNLRDKLPYDIDGAVVKVNDLEKREI 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG+ A+ PRW I+ K+ ++ T++LDI +Q+GRTG LTP A LEPV I G++++ ATLH Sbjct: 292 LGQTAKDPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVAISGSVVSRATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NEDYIK +DIR+GD V+V++AGE+IP+VV+++ ER + F P C Sbjct: 352 NEDYIK-----------EKDIRIGDTVIVQKAGEIIPEVVEVVKEERTGQEREFVMPDRC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + VR A RCTG L C AQ L + HF S+DA +IEGLG ++ Sbjct: 401 PECGALAVRLPGE------AIRRCTG-LNCPAQLLRGIIHFASKDAMDIEGLGPAIINQL 453 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 I AD++ L+ + GD SV NL ++I + + L+R + Sbjct: 454 LSK----GLIHNIADLYYLKYEDLI------QLERMGDKSVKNLLNAIEESKTRDLDRLL 503 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F LGI +G++ A+ +A+++ + N + + ++P +G +A++IV Sbjct: 504 FGLGINLIGSKAAQVIAEHFKTMDNIMKA----------KFEDFTQLPDIGPKMARSIVS 553 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F+ +N+ +E L + VS+ E K V TGTL+ R +A + + G Sbjct: 554 FFAEKQNVEIIEKLKNAGVNMKKLSKGKVSNIFEGKTFVLTGTLENYTREEATRMIEERG 613 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 V+ +S+KTD I+VG +PGSKL+KAQ+LG+KI++E+QF +L+ N Sbjct: 614 GKVTNSVSKKTDYILVGKDPGSKLKKAQELGIKIIDEKQFEEMLKGENI 662 >gi|171322051|ref|ZP_02910925.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MEX-5] gi|171092642|gb|EDT37943.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MEX-5] Length = 691 Score = 575 bits (1482), Expect = e-161, Method: Composition-based stats. Identities = 259/731 (35%), Positives = 389/731 (53%), Gaps = 56/731 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + Q P + Q + L ++ + YY +P + D+EYD L + Sbjct: 1 MARTQAEPPAS----QPEARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLET 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 P+L P+ P ++GGE+ V H P LSL + ED+ F R+ K Sbjct: 57 DHPELV---TPDSPTQRVGGEVAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALNK 113 Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 D + + E K DG I++RYE G FV A+ RGDG +GEDV+ +R I +IP Sbjct: 114 TTDLAGSVTEPVEYACELKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIP 173 Query: 175 RVLSLNI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DI 232 L P +++VRGEV + K DF LN+ A ++ +ANPRNAA+G LR+L+P Sbjct: 174 LKLKGAHVPALLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITA 233 Query: 233 TRYLNFFVHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 R L+FF +G+G +L G PVN G++ ++ ++ Sbjct: 234 QRPLSFFAYGIGVLDGVPMPDTHSALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEK 293 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R +LPYDIDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV +++ R DA F P+ CP+C S++ R + A RCTGGL C AQ+ + Sbjct: 403 EVVGALLDRRPDDAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L HF R A +I+GLG++ +D + +R PAD+F L + + F Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVE----LSLVRTPADLFNL------GFATLAELDRFA 506 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL DS+ K ++ +L RFI+ LGIRHVG A+ LAK++ S Sbjct: 507 EKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA-------- 558 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIE 648 L+ V VG I+A++I +F+ N +E L + K + Sbjct: 559 --SIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ + Sbjct: 617 GKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPV 676 Query: 709 MNEEQFLFLLQ 719 ++E+ LL+ Sbjct: 677 LDEDGLHQLLE 687 >gi|330445331|ref|ZP_08308983.1| DNA ligase, NAD-dependent [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489522|dbj|GAA03480.1| DNA ligase, NAD-dependent [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 671 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 252/714 (35%), Positives = 407/714 (57%), Gaps = 48/714 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +SI+ ++EL +L +++ YH YY P I D+EYD + ++ I P+ Sbjct: 1 MSID-LQQELFTLREQLDYHGHRYYVEDNPEIPDAEYDRMMQQLLKIEAEHPEWVTV--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG +V H I LSL+ +N +DLR F R+ + + + + E Sbjct: 57 DSPSQRVGGTALEGFTQVKHEIAMLSLDNAFNDDDLRAFQKRLQDRLRS--GSELNYCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190 PK+DG +++ YE G V AA RGDG +GE+++ +R I IP L + P +EVRGE Sbjct: 115 PKLDGLAVSLMYENGVLVQAATRGDGATGENITHNVRTIRAIPLKLQGTDWPARLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-E 248 V++ K F ALN++ + G K +ANPRNAA+G LR+L+P TR L+F+ + +G Sbjct: 175 VFMPKKGFEALNEKALKKGEKTFANPRNAAAGSLRQLDPKITATRPLSFYAYAVGVVEGR 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 A+ QYE L +++ G P+ +R+ ++ ++ Y+ + R +L Y+IDG+V KVD Sbjct: 235 ELAETQYERLCQLKAWGLPMCPEIRKVDSIEEVIVYHQSIGEKRQSLGYEIDGVVIKVDG 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q+QLG AR+PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEPV +GG + Sbjct: 295 IDTQQQLGFVARAPRWAIAYKFPAQEEMTVLNNVEFQVGRTGAITPVAKLEPVFVGGVTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D ++ L + +GD V+++RAG+VIP++ ++ + R AQ Sbjct: 355 SNATLHNADEVERL-----------GVMIGDTVIIRRAGDVIPQIASVVESRRPESAQAI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CP+CQS++ R A RCTGGL C AQ+ E LKHFVSR A +++G G+ Sbjct: 404 VFPTECPVCQSKIERIEGE------AVARCTGGLFCQAQRKEALKHFVSRKALDVDGCGE 457 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E + PAD+F + S ++ + G S L D++ + Sbjct: 458 KVIEQLVDRE----MVATPADLF------KFSAGEVTVLERMGPKSAQKLVDALKASKLT 507 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI+SLGIR VG A +LA Y+ + + +Q LI VP VGD++ Sbjct: 508 TLPRFIYSLGIREVGEATAANLANYFETLEAISQATK----------EQLIEVPDVGDVV 557 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A I F++ N+ V+ L + P I + E+ + +E K +V TG+L ++ R A Sbjct: 558 AAHIFNFFREEHNMAVVKDLQEVGIHWPEIEKPEEGIELPLEGKTVVLTGSLSQLTRSDA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + +LGA V+ +S+KTD+++ G+ GSKL KAQ+L ++I +E++ + L+ + Sbjct: 618 KAALQKLGAKVTGSVSKKTDLLVAGEAAGSKLAKAQELDIEIWDEQKLVDLMSK 671 >gi|167586849|ref|ZP_02379237.1| DNA ligase, NAD-dependent [Burkholderia ubonensis Bu] Length = 691 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 257/715 (35%), Positives = 385/715 (53%), Gaps = 52/715 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L ++ + YY +P + D+EYD L I P+L P+ P ++ Sbjct: 15 ARAAWLRDQLERANHAYYVLDQPDLPDAEYDRLFLELQQIEADHPELV---TPDSPTQRV 71 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132 GG + V H P LSL + ED+ F RI K D + + + E Sbjct: 72 GGAVAGGFTPVVHDAPMLSLNNGFEDEDIVAFDKRIADALDKAVDLAGSVTDPVEYACEL 131 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191 K DG I++RYE G FV A+ RGDG +GEDV+ +R I ++P L P +++VRGEV Sbjct: 132 KFDGLAISLRYENGVFVQASTRGDGTTGEDVTQNVRTIRSLPLKLKGRNLPAVLDVRGEV 191 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-I 249 + K DF LN+ A G++ +ANPRNAA+G LR+L+P R L+FF +G+G Sbjct: 192 LMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGAP 251 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +L LG PVN +G++ ++ ++ R +LPYDIDG+VYKV+ Sbjct: 252 MPDTHSALLDWYETLGLPVNRERAVVRGANGLLGFFRKIGEQRESLPYDIDGVVYKVNRR 311 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q++LG +R+PR+ ++HKF ++A T L+ ID+Q+GRTG +TPVARLEPV +GGA +T Sbjct: 312 DEQERLGFVSRAPRFALAHKFPAQEALTTLVAIDVQVGRTGAITPVARLEPVFVGGATVT 371 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNED ++ +DIR+GD V+V+RAG+VIP+VV +++ R A F Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGAVLDRRPDPAPEFV 420 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C SR+ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ Sbjct: 421 MPTECPVCGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 474 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + +R PAD+F L + + F + S NL DS+ K ++ + Sbjct: 475 IIDQLVEQN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTT 524 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RFI+ LGIRHVG A+ LAK++ S L+ V VG I+A Sbjct: 525 LARFIYGLGIRHVGESTAKDLAKHFGSLNPIMDAT----------VEELLEVNDVGPIVA 574 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++I +F+ N +E L + K + K +V TGTL + R A Sbjct: 575 ESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAA 634 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 +E + GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ LL+ + Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLEGH 689 >gi|116690045|ref|YP_835668.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia HI2424] gi|166215562|sp|A0K8E8|DNLJ_BURCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215593|sp|Q1BHI7|DNLJ_BURCA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116648134|gb|ABK08775.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia HI2424] Length = 691 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 256/713 (35%), Positives = 386/713 (54%), Gaps = 52/713 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L ++ + YY +P + D+EYD L R + P+L P+ P ++ Sbjct: 15 ARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELV---TPDSPTQRV 71 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132 GGE V H P LSL + ED+ F R+ K D + + + E Sbjct: 72 GGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKTTDLAGSVTDPVEYACEL 131 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191 K DG I++RYE+G FV AA RGDG +GEDV+ +R I +IP L P +++VRGEV Sbjct: 132 KFDGLAISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGEV 191 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249 + K DF LN+ A ++ +ANPRNAA+G LR+L+ R L+FF +G+G Sbjct: 192 LMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLDGMP 251 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +L LG PVN + G++ ++ ++ R +LPYDIDG+VYKV+ Sbjct: 252 MPDTHSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYDIDGVVYKVNRR 311 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q++LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +T Sbjct: 312 DEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVT 371 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA F Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFV 420 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ Sbjct: 421 MPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 474 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + +R PAD+F L + + F + S NL DS+ K ++ + Sbjct: 475 IIDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLIDSLEKAKHTT 524 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RFI+ LGIRHVG A+ LAK++ S L+ V VG I+A Sbjct: 525 LARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA----------SIEELLEVNDVGPIVA 574 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 +++ +F+ N +E L + K + K +V TGTL + R A Sbjct: 575 ESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAA 634 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ LL+ Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 687 >gi|107028796|ref|YP_625891.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia AU 1054] gi|105897960|gb|ABF80918.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia AU 1054] Length = 746 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 256/713 (35%), Positives = 386/713 (54%), Gaps = 52/713 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L ++ + YY +P + D+EYD L R + P+L P+ P ++ Sbjct: 70 ARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELV---TPDSPTQRV 126 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132 GGE V H P LSL + ED+ F R+ K D + + + E Sbjct: 127 GGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKTTDLAGSVTDPVEYACEL 186 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191 K DG I++RYE+G FV AA RGDG +GEDV+ +R I +IP L P +++VRGEV Sbjct: 187 KFDGLAISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGEV 246 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249 + K DF LN+ A ++ +ANPRNAA+G LR+L+ R L+FF +G+G Sbjct: 247 LMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLDGMP 306 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +L LG PVN + G++ ++ ++ R +LPYDIDG+VYKV+ Sbjct: 307 MPDTHSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYDIDGVVYKVNRR 366 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q++LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +T Sbjct: 367 DEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVT 426 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA F Sbjct: 427 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFV 475 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ Sbjct: 476 MPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 529 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + +R PAD+F L + + F + S NL DS+ K ++ + Sbjct: 530 IIDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLIDSLEKAKHTT 579 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RFI+ LGIRHVG A+ LAK++ S L+ V VG I+A Sbjct: 580 LARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA----------SIEELLEVNDVGPIVA 629 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 +++ +F+ N +E L + K + K +V TGTL + R A Sbjct: 630 ESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAA 689 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ LL+ Sbjct: 690 KEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 742 >gi|197336238|ref|YP_002156719.1| DNA ligase, NAD-dependent [Vibrio fischeri MJ11] gi|254781450|sp|B5FGU7|DNLJ_VIBFM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|197317728|gb|ACH67175.1| DNA ligase, NAD-dependent [Vibrio fischeri MJ11] Length = 668 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 257/713 (36%), Positives = 400/713 (56%), Gaps = 50/713 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +SIEQ L L+Q+++YH YY P + D+EYD + + +I P+L Sbjct: 1 MSIEQT---LDELKQQLNYHAYRYYVEDSPELPDAEYDRMMQELLSIESEHPELVTV--- 54 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GGE ++ H IP LSL+ ++ E+L F R+ K + F E Sbjct: 55 DSPSQRVGGEALDGFTQIQHEIPMLSLDNAFSDEELEAFEKRMNDRLISKPVS--LFCCE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 PK+DG +++ Y GK V A RGDG +GE+++ +R I IP L P +EVRGE Sbjct: 113 PKLDGLAVSLLYVNGKLVQAGTRGDGTTGENITENVRTIRCIPLTLQGEGWPTRLEVRGE 172 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE- 248 V++ K F ALN+ + G KP+ANPRNAA+G LR+L+ TR L+F+ + +G Sbjct: 173 VFMPKAGFEALNERALKRGEKPFANPRNAAAGSLRQLDSKITATRPLSFYAYSVGVIEGG 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Y+ +++ G P+ +Q + + +YY ++ R L Y+IDG+V KVD+ Sbjct: 233 ELETSHYQRFVQLKSWGLPMCEETKQCYSLTEVKAYYKDILKRRDALKYEIDGVVIKVDD 292 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ+QLG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG + Sbjct: 293 IALQEQLGFVARAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVGGVTV 352 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I L + +GD V+++RAG+VIP++V ++ R D++ Sbjct: 353 SNATLHNADEIARL-----------GVHIGDTVIIRRAGDVIPQIVSVVEARRPTDSKAI 401 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 +P+ CP+C S + R A RC GL C AQ+ E LKHFVSR A +++GLG Sbjct: 402 VYPTHCPVCGSNLERVEGE------AVTRCGAGLVCQAQRKEALKHFVSRKALDVDGLGD 455 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E + PAD+F L S + + G S N+ D++NK + Sbjct: 456 KVVEQLVDKE----MVETPADLFKL------SAGVLTVLERMGPKSAQNVVDALNKAKAT 505 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF++SLGIR VG A +LA ++ + + + LI V VGDI+ Sbjct: 506 TLPRFLYSLGIREVGEATAANLAAHFYTLEAIQVAT----------FEQLIEVSDVGDIV 555 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A+ ++ F+ P N ++ L + P I +++V + K +V TGTL K++R++A Sbjct: 556 AKHVLNFFAEPHNKTVIDDLQEMGIHWPEIKALDESVPQPLAGKVVVLTGTLHKLKRNEA 615 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + +LGA V+ +S+KTDI+ G+ GSKL KA++LGV++MNEEQ + LL Sbjct: 616 KAALQELGAKVTGSVSKKTDILFAGEAAGSKLAKAEELGVEVMNEEQLIELLN 668 >gi|289577826|ref|YP_003476453.1| DNA ligase, NAD-dependent [Thermoanaerobacter italicus Ab9] gi|289527539|gb|ADD01891.1| DNA ligase, NAD-dependent [Thermoanaerobacter italicus Ab9] Length = 662 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 238/707 (33%), Positives = 386/707 (54%), Gaps = 49/707 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ ++ L ++I+YH+ YY +P I D EYD L R + +P+L P+ P + Sbjct: 4 KERINELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPELK---TPDSPSQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE TH +P LSL ++ +L+ F R+ + + +E KIDG Sbjct: 61 VGGEPLKEFEPFTHIVPMLSLANAFSEGELKDFDRRVREAVG-----DVEYVVELKIDGL 115 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G F + RGDG GE+V+ ++ I +IP L N+ + VRGEV++ + Sbjct: 116 SVELIYENGIFTVGSTRGDGIIGENVTPNLKTIKSIPLRLKDNVS--LVVRGEVFMPRAS 173 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN E +G +ANPRNAA+G LR+L+P R L+ F+ L + K E Sbjct: 174 FERLNTEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQRVEGRKFKTHVE 233 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 LQ ++ GF V ++ + ++ E+++++ LPYDIDG V KV++ ++ LG Sbjct: 234 TLQFLKEQGFKVIPIHKKCSNIDEVIREIEEIRNLKDKLPYDIDGAVVKVNDLEKREILG 293 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + A+ PRW I+ K+ ++ T++LDI +Q+GRTG LTP A LEPV I G++++ ATLHNE Sbjct: 294 QTAKEPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVPISGSVVSRATLHNE 353 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYIK +DIR+GD V++++AGE+IP+VV+++ ER + F P+ CP+ Sbjct: 354 DYIK-----------EKDIRIGDTVIIQKAGEIIPEVVEVVKEERTGHEREFIMPNKCPV 402 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + VR A RCT C AQ L + HF S+DA +IEGLG ++ Sbjct: 403 CGALAVRLPGE------AVRRCTSV-NCPAQLLRGIIHFASKDAMDIEGLGPAIINQLLS 455 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + I AD++ L+ + GD SV NL ++I + + L+R +F Sbjct: 456 N----GLIHNIADLYYLKYEDLI------QLERMGDKSVKNLLNAIEESKTRDLDRLLFG 505 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +G++ A+ +A+++ + + + + ++P VG +A++IV F+ Sbjct: 506 LGINLIGSKAAQVIAEHFKTMDDIMKA----------KFEDFTKLPDVGPKMARSIVSFF 555 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 +N+ +E L K ++ VSS E K V TG L+ R +A + + G Sbjct: 556 AEKQNVETIEKLKKAGVNMKKLSKEKVSSIFEGKTFVLTGALENYTREEATRIIEERGGK 615 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 V+ +S+KTD ++VG +PGSKL+KAQ+LG++I++E+QF +L+ N Sbjct: 616 VTNSVSKKTDYVLVGKDPGSKLKKAQELGIEIIDEKQFEEMLKGENI 662 >gi|170733380|ref|YP_001765327.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia MC0-3] gi|254781274|sp|B1JUF5|DNLJ_BURCC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169816622|gb|ACA91205.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia MC0-3] Length = 691 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 256/713 (35%), Positives = 386/713 (54%), Gaps = 52/713 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L ++ + YY +P + D+EYD L R + P+L P+ P ++ Sbjct: 15 ARAAWLRDQLERANHAYYVLDQPDLPDAEYDRLFRELQQLETDHPELV---TPDSPTQRV 71 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132 GGE V H P LSL + ED+ F R+ K D + + + E Sbjct: 72 GGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKTTDLAGSVTDPVEYACEL 131 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191 K DG I++RYE+G FV AA RGDG +GEDV+ +R I +IP L P +++VRGEV Sbjct: 132 KFDGLAISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGEV 191 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249 + K DF LN+ A ++ +ANPRNAA+G LR+L+ R L+FF +G+G Sbjct: 192 LMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLDGMP 251 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +L LG PVN + G++ ++ ++ R +LPYDIDG+VYKV+ Sbjct: 252 MPDTHSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYDIDGVVYKVNRR 311 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q++LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +T Sbjct: 312 DEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVT 371 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA F Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFV 420 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ Sbjct: 421 MPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 474 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + +R PAD+F L + + F + S NL DS+ K ++ + Sbjct: 475 IIDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLIDSLEKAKHTT 524 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RFI+ LGIRHVG A+ LAK++ S L+ V VG I+A Sbjct: 525 LARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA----------SIEELLEVNDVGPIVA 574 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 +++ +F+ N +E L + K + K +V TGTL + R A Sbjct: 575 ESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAA 634 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ LL+ Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 687 >gi|283832193|ref|ZP_06351934.1| DNA ligase, NAD-dependent [Citrobacter youngae ATCC 29220] gi|291071830|gb|EFE09939.1| DNA ligase, NAD-dependent [Citrobacter youngae ATCC 29220] Length = 671 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 390/711 (54%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D EYD L + + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDLLMHKLQWLEALHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K + + + E K Sbjct: 58 PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSTDKLTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-IIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGENIPTRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGAL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ +++YY++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVALCDSPEEVLAYYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETREIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PQHCPVCNSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+FTL K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFTLTA------GKLTGLDRMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLDALEAA----------SIEELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL + + + + + S K +V TG+L + R A+ Sbjct: 559 HVFNFFAEESNREVIGQLLAQGIHWPAPVVINAEEIDSPFAGKTVVLTGSLSLMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +T+LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLTELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|221215451|ref|ZP_03588415.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD1] gi|221164635|gb|EED97117.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD1] Length = 691 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 256/713 (35%), Positives = 383/713 (53%), Gaps = 52/713 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L ++ + YY +P + D+EYD L R + PDL P+ P ++ Sbjct: 15 ARAAWLRDQLERANHAYYVLDQPDLPDAEYDRLFRELQQLESDHPDLV---TPDSPTQRV 71 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132 GG + V H P LSL + +D+ F R+ K D + + + E Sbjct: 72 GGAVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGKTTDLAGSVTDPVEYACEL 131 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191 K DG I++RYE G FV A+ RGDG +GEDV+ +R I +IP L P +++VRGEV Sbjct: 132 KFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGERVPAVLDVRGEV 191 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249 + K DF LN+ A ++ +ANPRNAA+G LR+L+P R L+FF +G+G Sbjct: 192 LMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMP 251 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +L LG PVN G++ ++ ++ R +LPYDIDG+VYKV+ Sbjct: 252 MPDTHSALLDWYEALGLPVNRERAVVYGAQGLLDFFRKVGEKRESLPYDIDGVVYKVNRR 311 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q +LG +R+PR+ ++HKF ++A T+L+ I +Q+GRTG +TPVARLEPV +GGA +T Sbjct: 312 DEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIGVQVGRTGAITPVARLEPVFVGGATVT 371 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA F Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFV 420 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ Sbjct: 421 MPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 474 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + +R PAD+F L + + F + S NL DS+ K ++ + Sbjct: 475 IIDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLKKAKHTT 524 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RFI++LGIRHVG A+ LAK++ S L+ V VG I+A Sbjct: 525 LARFIYALGIRHVGESTAKDLAKHFGSLDPIMNAT----------IDELLEVNDVGPIVA 574 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++I +F+ N +E L + K + K +V TGTL + R A Sbjct: 575 ESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDDA 634 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + GA V+ +S+KTD +I G GSKL KA+ LG+ +++E+ LL+ Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVIAGAEAGSKLAKAEALGIPVLDEDGLHQLLE 687 >gi|307729327|ref|YP_003906551.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1003] gi|307583862|gb|ADN57260.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1003] Length = 688 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 261/722 (36%), Positives = 389/722 (53%), Gaps = 49/722 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 P + + + L E+ + YY +P + D+EYD L + ++I PDL Sbjct: 4 TPASNPATSAPAERAAWLRTELERANYAYYVLDQPDLPDAEYDRLFKELESIEAEHPDLI 63 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ---KKDD 123 P+ P ++GGE V H P LSL + ED+ F R+ K+ Sbjct: 64 V---PDSPTQRVGGEAASGFEPVVHDQPMLSLNNGFADEDIIAFDKRVGDALGNNAKEPP 120 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-P 182 + + E K DG I++RY G FV AA RGDG +GE+V+ IR + +IP L P Sbjct: 121 VPVDYATELKFDGLAISLRYVDGVFVQAATRGDGTTGENVTENIRTVRSIPLRLKGKRVP 180 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 I++VRGEV + K DF LN+ A G K +ANPRNAA+G LR+L+ R L+FF + Sbjct: 181 HILDVRGEVLMFKRDFERLNERQRAAGHKEFANPRNAAAGSLRQLDSKITAQRPLSFFAY 240 Query: 242 GLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 G+G E+L + LG PVN G+++++ + R LPYDID Sbjct: 241 GIGVLDGMEMPATHSELLDWYKELGLPVNAERAVVKGAEGLLAFFRAVGEKRDKLPYDID 300 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+VYKV+ Q+ LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEP Sbjct: 301 GVVYKVNRRDEQEALGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEP 360 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV +++ Sbjct: 361 VFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSALLDR 409 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R DA+ F P+ CP+C S + R + A RCTGGL C AQ+ + L HF R A Sbjct: 410 RPADAREFVMPTHCPVCGSNIERLPDE------AIARCTGGLICPAQRKQALWHFAQRRA 463 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +I+GLG++ +D + +R PAD+F L + + F D S NL D Sbjct: 464 MDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFATLAELDRFADKSAQNLLD 513 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 S+ K ++ +L RFI++LGIRHVG A+ LAK++ S +L+ Sbjct: 514 SLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SVEALLE 563 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGT 657 V VG ++A++I +F+ N +E L + K + K +V TGT Sbjct: 564 VNDVGPVVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTIVLTGT 623 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L + R A+E + GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ L Sbjct: 624 LPTLSREDAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMRKL 683 Query: 718 LQ 719 L+ Sbjct: 684 LE 685 >gi|78485583|ref|YP_391508.1| DNA ligase, NAD-dependent [Thiomicrospira crunogena XCL-2] gi|123741582|sp|Q31G89|DNLJ_THICR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|78363869|gb|ABB41834.1| DNA ligase, NAD-dependent [Thiomicrospira crunogena XCL-2] Length = 672 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 265/711 (37%), Positives = 403/711 (56%), Gaps = 48/711 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K L + ++ H YY PII D +YD L ++ I PD P P + Sbjct: 4 QKAYQKLVESLNQHSYQYYVLDDPIISDPQYDVLYQKLLRIEDEHPDWIL---PESPSQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 IG E V H++P SL+ + ++L+ F+ RI D S+ F+ EPK+DG Sbjct: 61 IGDEPLKEFHTVRHAVPMYSLDNAFEDDELKSFLKRIEEKL--PDQKSLAFSAEPKMDGL 118 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKN 196 I IRYE G+ V A RGDG GEDV+ IR I ++P L N PE++EVRGEV++SK+ Sbjct: 119 AINIRYENGQLVQATTRGDGQVGEDVTHNIRPIYSVPLKLFGNNWPEVVEVRGEVFMSKS 178 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255 F LN+ +G K +ANPRNAA+G LR+L+ R+L+FF++G G+ S+ + QY Sbjct: 179 AFEQLNEHQQEIGGKIFANPRNAAAGSLRQLDSKVAAKRHLSFFLYGWGELSDDWQLPQY 238 Query: 256 E--MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 M++++ G P N + G+ +YY ++++ RS LPY+IDG+VYK+++ LQ+ Sbjct: 239 YSEMIEQLVEWGLPANPQSEIISGLEGMFAYYEKIQAKRSELPYEIDGIVYKLNDIKLQQ 298 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 QLG AR+PRW I+ KF ++ T+LLDI++Q+GRTG +TPVARL+PV++GG +++NATL Sbjct: 299 QLGFTARAPRWAIARKFPAEEVWTKLLDIEVQVGRTGAITPVARLQPVSVGGVIVSNATL 358 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D IK +D+R+GD V+V+RAG+VIP+VV I+ +R + Q F P Sbjct: 359 HNMDEIKR-----------KDVRIGDTVIVRRAGDVIPEVVGPILTQRPENTQLFEMPQH 407 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S VV++L+ A RCTGGL C AQ+ L HFVSR A +I+GLG + +D Sbjct: 408 CPECGSDVVKELDK------AVFRCTGGLVCPAQRKRALHHFVSRKAMDIQGLGDKLIDQ 461 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ P D + L + + + + S N+ I +L +F Sbjct: 462 LVDK----GWVKHPDDFYHLTVEKLAT------LERMAEKSAQNVITGIQASLETTLAKF 511 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I+SLGI VG A++LA ++ Q ++ LI + VG+++A+ IV Sbjct: 512 IYSLGIPEVGEVTAKNLANHFKDLNAIKQA----------EFEELITLNDVGEVVAEHIV 561 Query: 614 EFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F++ P N ++ LL P+ N S NK +V TGTL ++ R +A+ + Sbjct: 562 NFFKEPHNESVIQGLLDAGMHWPTPETTLVNEDSPFANKVVVLTGTLSEMSRPEAKVLLE 621 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 GA ++ +S KTD +I G+ GSKL KA+ LGV +++E ++L ++ Q + Sbjct: 622 AQGAKITGSVSAKTDYVIAGEKAGSKLTKAESLGVAVLSEAEWLAMMPQQD 672 >gi|161524425|ref|YP_001579437.1| DNA ligase, NAD-dependent [Burkholderia multivorans ATCC 17616] gi|189350820|ref|YP_001946448.1| NAD-dependent DNA ligase [Burkholderia multivorans ATCC 17616] gi|254781276|sp|A9AIK9|DNLJ_BURM1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|160341854|gb|ABX14940.1| DNA ligase, NAD-dependent [Burkholderia multivorans ATCC 17616] gi|189334842|dbj|BAG43912.1| NAD-dependent DNA ligase [Burkholderia multivorans ATCC 17616] Length = 691 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 256/712 (35%), Positives = 384/712 (53%), Gaps = 52/712 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 + L ++ + YY +P + D+EYD L R + PDL P+ P ++G Sbjct: 16 RAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLESDHPDLV---TPDSPTQRVG 72 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPK 133 G + V H P LSL + +D+ F R+ K D + + + E K Sbjct: 73 GAVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGKTTDLAGSVTDPVEYACELK 132 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 DG I++RYE G FV A+ RGDG +GEDV+ +R I +IP L + P +++VRGEV Sbjct: 133 FDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGDRVPAVLDVRGEVL 192 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIF 250 + K DF LN+ A ++ +ANPRNAA+G LR+L+P R L+FF +G+G Sbjct: 193 MFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMPM 252 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +L LG PVN G++ ++ ++ R +LPYDIDG+VYKV+ Sbjct: 253 PDTHSALLDWYEALGLPVNRERAVVYGAQGLLDFFRKVGEKRESLPYDIDGVVYKVNRRD 312 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q +LG +R+PR+ ++HKF ++A T+L+ I +Q+GRTG +TPVARLEPV +GGA +TN Sbjct: 313 EQDRLGFVSRAPRFALAHKFPAQEALTKLVAIGVQVGRTGAITPVARLEPVFVGGATVTN 372 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA F Sbjct: 373 ATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFVM 421 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ Sbjct: 422 PTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKI 475 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + +R PAD+F L + + F + S NL DS+ K ++ +L Sbjct: 476 IDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTL 525 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFI++LGIRHVG A+ LAK++ S L+ V VG I+A+ Sbjct: 526 ARFIYALGIRHVGESTAKDLAKHFGSLDPIMNAT----------IDELLEVNDVGPIVAE 575 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +I +F+ N +E L + K + K +V TGTL + R A+ Sbjct: 576 SIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDDAK 635 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 E + GA V+ +S+KTD +I G GSKL KA+ LG+ +++E+ LL+ Sbjct: 636 EMLEAAGAKVAGSVSKKTDYVIAGAEAGSKLAKAEALGIPVLDEDGLHQLLE 687 >gi|325529285|gb|EGD06234.1| NAD-dependent DNA ligase [Burkholderia sp. TJI49] Length = 691 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 254/715 (35%), Positives = 384/715 (53%), Gaps = 52/715 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L ++ + YY +P + D+EYD L + P+ P+ P ++ Sbjct: 15 ARAAWLRDQLQQANYAYYVLDQPDLPDAEYDRLFAELQQLEADHPEFV---TPDSPTQRV 71 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132 GGE+ V H P LSL + +D+ F R+ K D + + + E Sbjct: 72 GGEVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGKAVDLAGSVTDPVEYACEL 131 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191 K DG I++RYE+G FV A+ RGDG +GEDV+ +R I +IP L P +++VRGEV Sbjct: 132 KFDGLAISLRYERGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGADVPAVLDVRGEV 191 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249 + K DF LN+ A ++ +ANPRNAA+G LR+L+P R L+FF +G+G Sbjct: 192 LMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMP 251 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +L LG PVN + G++ ++ ++ R LPYDIDG+VYKV+ Sbjct: 252 MPDTHSGLLDWYETLGLPVNRERAVVHGADGLLGFFRKVGEKRDGLPYDIDGVVYKVNRR 311 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +T Sbjct: 312 DEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVT 371 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA F Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFV 420 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ Sbjct: 421 MPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 474 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + +R PAD+F L + + F + S NL DS+ K ++ + Sbjct: 475 IIDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTT 524 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RFI+ LGIRHVG A+ LAK++ S L+ V VG I+A Sbjct: 525 RARFIYGLGIRHVGESTAKDLAKHFGSLDPIMNA----------SIDELLEVNDVGPIVA 574 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++I +F+ N +E L + K + K +V TGTL + R A Sbjct: 575 ESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAA 634 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 +E + GA V+ +S+KTD ++ G GSKL KA++LG+ +++EE LL+ + Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEEGLHQLLEGH 689 >gi|317049042|ref|YP_004116690.1| DNA ligase, NAD-dependent [Pantoea sp. At-9b] gi|316950659|gb|ADU70134.1| DNA ligase, NAD-dependent [Pantoea sp. At-9b] Length = 672 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 251/712 (35%), Positives = 399/712 (56%), Gaps = 49/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++++++L + +H+ Y+ P + D+EYD L + + A P+L P+ Sbjct: 1 MKSVQEQITALRTTLRHHEYLYHVMDTPEVPDAEYDRLMAQLRELESAHPELV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ ++ F R+ + DD + + E K Sbjct: 58 PTQRVGAAPLAAFEQVRHEVPMLSLDNTFDEAGFLAFNKRVQDRLKSSDD--LTYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE G V AA RGDG +GE+++A +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGLLVSAATRGDGTTGENITANVRTIHAIPLRLHGDNIPARVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 ++++ F LN++ G K +ANPRNAA+G LR+L+P R L FF +GLG Sbjct: 176 MTESGFEKLNEDARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGEM 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 LQ+ + G PV++ +R AN ++++Y E++ R TL +DIDG+V KVD + Sbjct: 236 PASHLGRLQQFKAWGLPVSDRIRLANNADDVLAFYREVEEARPTLGFDIDGVVIKVDSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVQVAGVVVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L +R+GD+V+++RAG+VIP+VV+++ +ER D + F Sbjct: 356 ATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVESERPEDTREIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PSHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E ++ PAD+F L K+ + G S N+ D++ K + +L Sbjct: 459 IDQLVEKE----YVKTPADLFRLTA------GKLTGLDRMGPKSAQNVVDALEKAKFTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + D +LI V VG ++A Sbjct: 509 PRFLYALGIREVGEATAANLANHFGELEKVMDA----------DLDALIAVQDVGQVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKA 666 + F N + L +E+ + E + S K +V TG+L ++ R A Sbjct: 559 HVRNFMDEESNREVIRELTQEMGVHWPQVEVVNAAEIDSPFAGKTVVLTGSLSQMNRDDA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 KARLTALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIAVIDEAEMIRLL 670 >gi|37525354|ref|NP_928698.1| NAD-dependent DNA ligase LigA [Photorhabdus luminescens subsp. laumondii TTO1] gi|81416713|sp|Q7MBH2|DNLJ_PHOLL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|36784781|emb|CAE13691.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 672 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 238/714 (33%), Positives = 389/714 (54%), Gaps = 49/714 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ +++ L + +H+ Y+ P I D+EYD L + + +P+L S + Sbjct: 1 MKSTAQQIEKLRTTLRHHEYLYHVMDAPEIPDAEYDRLMQELQDLEEQYPELITS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +IG + +V H IP LSL+ +++ E F R+ K+ + E K Sbjct: 58 PTQRIGAAPLAAFEQVRHEIPMLSLDNVFDEESYLAFDKRVRDRL--KETQDLVVCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE++++ IR I IP L P IE+RGEV+ Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITSNIRTIGAIPLRLFGENIPARIEIRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQKGFEKLNEEARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLAFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 YE L + + G PV++ V+ ++ +Y+++ + RS L +DIDG+V K++ Sbjct: 236 PASHYERLIQFKKWGLPVSDKVKVCTDSQQVIDFYHDIVNQRSALGFDIDGVVVKINSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG AR+PRW + KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEILGFVARAPRWATAFKFPAQEQMTIVRDVEFQVGRTGAITPVARLEPVQVSGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+++RAG+VIP+VV ++ R D+ F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIIRRAGDVIPQVVGVLEERRPQDSNVVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C + + R A RCTGGL C AQ+ E L+HFVSR A +++G+G++ Sbjct: 405 PEHCPVCGADIERIEGE------AVARCTGGLVCGAQRKEALRHFVSRRAMDVDGMGEKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D E ++ PAD+F L K+ + G S N+ D++ K + + Sbjct: 459 IDQLVDKE----YVKTPADLFRLTA------GKLTGLDRMGPKSAQNVVDALEKAKKTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ D +L V VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFGELDKLRSA----------DEEALKEVQDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 +V F+ P N ++ L+ ++ + + + S K +V TG+L ++ R +A Sbjct: 559 HVVNFFIEPHNQTVIDDLIDDIGINWEPVVVTRAEKIDSPFSGKTVVLTGSLHQLSRDEA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + LGA V+ +S+KTD++I G+ GSKL KA +L + +++EE+ + LL + Sbjct: 619 KAKLVALGAKVTGSVSKKTDLVIAGEAAGSKLAKANELNIPVIDEEEMIRLLGE 672 >gi|172060972|ref|YP_001808624.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MC40-6] gi|254781273|sp|B1YSH2|DNLJ_BURA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|171993489|gb|ACB64408.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MC40-6] Length = 691 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 257/713 (36%), Positives = 383/713 (53%), Gaps = 52/713 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L ++ + YY +P + D+EYD L + PDL P+ P ++ Sbjct: 15 ARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLETDHPDLV---TPDSPTQRV 71 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132 GGE+ V H P LSL + ED+ F R+ K D + + + E Sbjct: 72 GGEVAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALGKTTDLAGSVTDPVEYACEL 131 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191 K DG I++RYE G FV A+ RGDG +GEDV+ +R I +IP L P +++VRGEV Sbjct: 132 KFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAHVPALLDVRGEV 191 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249 + K DF LN+ A ++ +ANPRNAA+G LR+L+P R L+FF +G+G Sbjct: 192 LMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMP 251 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +L G PVN G++ ++ ++ R +LPYDIDG+VYKV+ Sbjct: 252 MPDTHSALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEKRESLPYDIDGVVYKVNRR 311 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q +LG +R+PR+ ++HKF ++A TRL+ ID+Q+GRTG +TPVARLEPV +GGA +T Sbjct: 312 DEQDRLGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARLEPVFVGGATVT 371 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNED ++ +DIR+GD V+V+RAG+VIP+VV ++ R DA F Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGALLERRPDDAAEFV 420 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ Sbjct: 421 MPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 474 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + +R PAD+F L + + F + S NL DS+ K ++ + Sbjct: 475 IIDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTT 524 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RFI+ LGIRHVG A+ LAK++ S L+ V VG I+A Sbjct: 525 LARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA----------SIEELLEVNDVGPIVA 574 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++I +F+ N +E L + K + K +V TGTL + R A Sbjct: 575 ESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAA 634 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E+ LL+ Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEDGLHQLLE 687 >gi|293391716|ref|ZP_06636050.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952250|gb|EFE02369.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans D7S-1] Length = 671 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 246/708 (34%), Positives = 392/708 (55%), Gaps = 45/708 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 ++++ L + + +H+ Y+ P I DSEYD L + A+ P+L + + P Sbjct: 4 SIQQQIDDLRKTLRHHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELVTA---DSPT 60 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G ++ H IP LSL+ ++ E+ F+ RI + F EPK+D Sbjct: 61 QRVGARPLSEFAQIRHEIPMLSLDNAFSNEEFFAFVKRIQDRLALVP-EPLTFCCEPKLD 119 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194 G ++I Y G AA RGDG +GED++ IR I IP L + N P +EVRGEV++ Sbjct: 120 GLAVSILYVNGVLTQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMP 179 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF-FVHGLGKTS-EIFAK 252 F LN+ + G K +ANPRNAA+G LR+L+P ++ + +G Sbjct: 180 HAGFERLNERALQHGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYSIGIAEGVELPP 239 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 +E LQ ++ +G PVNN ++ + ++++Y + + RS+L YDIDG V K+++ +LQ Sbjct: 240 THFERLQWLKSVGIPVNNEIQLCDGIENVLNFYRTIMAKRSSLGYDIDGAVLKINDIALQ 299 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG +++PRW I++KF ++ T L +++ Q+GRTG +TPVA+L+PV + G ++NAT Sbjct: 300 QRLGFISKAPRWAIAYKFPAQEELTELNEVEFQVGRTGAITPVAKLKPVFVAGVTVSNAT 359 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I+ L +I +GD V+++RAG+VIP+++ ++ + R DA+ FP+ Sbjct: 360 LHNGDEIERL-----------NIAIGDTVIIRRAGDVIPQIIGVVHDRRPADARQIVFPT 408 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S +VR A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++ Sbjct: 409 ECPVCGSLIVRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKLIE 462 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 E I PAD+F L T + + G S N S+ K +N +L R Sbjct: 463 QLVDRE----LIHTPADLFKL------DLTTLSRLERMGPKSAENALTSLEKAKNTTLAR 512 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LGIR VG A +LA ++ + + D L +VP VG+++A I Sbjct: 513 FIFALGIRDVGEATALNLANHFKTLEALQNA----------DLEQLQQVPDVGEVVANRI 562 Query: 613 VEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ N+ VE L+ + ++ + + K +V TGTL ++ R+ A+ + Sbjct: 563 FVFWHEAHNVAVVEDLIAQGVHWETVDVQEVKENPFKGKTVVLTGTLSQMGRNDAKALLQ 622 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 QLGA VS +S KTD +I G+ GSKL KA +LGV++++EE+FL + Sbjct: 623 QLGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFLGWIN 670 >gi|269138493|ref|YP_003295193.1| NAD-dependent DNA ligase [Edwardsiella tarda EIB202] gi|267984153|gb|ACY83982.1| NAD-dependent DNA ligase [Edwardsiella tarda EIB202] gi|304558517|gb|ADM41181.1| DNA ligase [Edwardsiella tarda FL6-60] Length = 675 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 259/716 (36%), Positives = 397/716 (55%), Gaps = 52/716 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ ++L L + +H+ YY +P + D+EYD L + + P L + Sbjct: 1 MTP-TIEQQLEQLRDALRHHEYQYYVLDEPQVTDAEYDRLMAQLKQLEAEHPALVTA--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + +V H +P LSL+ +++ E + F R++ K + F E Sbjct: 57 DSPSQRVGGAPLAAFGQVHHEVPMLSLDNVFDEESYQAFDKRLHERL--KSGEPLTFCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 PK+DG +++ YE+G V AA RGDG +GED++A ++ I IP L IP IEVRGE Sbjct: 115 PKLDGLAVSLLYEQGMLVRAATRGDGSTGEDITANVKTIRAIPLRLQGVAIPARIEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V++ ++ F A+N+E G K +ANPRNAA+G LR+L+P R L F+ +G G Sbjct: 175 VFMPQDGFEAMNEEARRRGAKIFANPRNAAAGSLRQLDPRITAQRPLTFYCYGSGLLEGG 234 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Y+ LQ+ + G PV+ V+ +++YY + + R L +DIDG+V KVD+ Sbjct: 235 TLPDSHYQCLQRFKSWGLPVSERVKLCCGSAEVLAYYRQTEQDRPGLGFDIDGVVIKVDD 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 ++Q++LG AR+PRW + KF ++ TRL ++ Q+GRTG +TPVARLEPV + G + Sbjct: 295 IAIQERLGFVARAPRWATAFKFPAQEQMTRLNGVEFQVGRTGAITPVARLEPVQVAGVTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I+ L D+R+GD V+V+RAG+VIP+VV ++ R DA Sbjct: 355 SNATLHNADEIERL-----------DLRIGDTVIVRRAGDVIPQVVGVVEAMRPRDALEI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CP+C S V R A RC+GGL C+AQ+ E LKHFVSR A ++EG+G Sbjct: 404 GFPTHCPVCGSEVERTEGE------AVARCSGGLICAAQRKESLKHFVSRRAMDVEGMGD 457 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E + PAD++ L S K+ + G S T L ++ + R Sbjct: 458 KVIEQLVDKE----YVATPADLYRL------SAGKLTGLERMGPKSATKLIAALERSRET 507 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF+F+LGIR VG A +LA ++ S Q D SL RVP VG+++ Sbjct: 508 TLARFLFALGIREVGEATAANLASHFGSLQALRAA----------DLESLKRVPEVGEVV 557 Query: 609 AQAIVEFYQNPRNICAVEALLK-EVSP-----SIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 A IV F N ++ L+ EV + + + S K +V TG+L + Sbjct: 558 ASHIVHFLSEAHNRQVIDELISDEVGIRWPEGAPAQSAPAIDSPFAGKTVVLTGSLSVLS 617 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A++ +T LGA VS +S+KTD++I G+ GSKL KA LG+++++E Q L +L Sbjct: 618 RDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKANALGIEVIDEAQMLRML 673 >gi|315180839|gb|ADT87753.1| DNA ligase [Vibrio furnissii NCTC 11218] Length = 669 Score = 574 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 249/710 (35%), Positives = 385/710 (54%), Gaps = 47/710 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + L+ L+ + YH YY P I D+EYD L R + P+L P+ Sbjct: 1 MQNVEQRLTELKDTLHYHAIRYYVEDDPTIPDAEYDRLMRELLDLEARHPELV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG +VTH IP LSL+ ++ ++L F R+ F EPK Sbjct: 58 PSQRVGGAPLAGFEQVTHEIPMLSLDNAFDDDELNSFHRRMGDRVLAAKTAK--FCCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG +++ Y G V AA RGDG +GE+++ +R I +IP L P IEVRGEV+ Sbjct: 116 LDGLAVSLLYVDGVLVQAATRGDGTTGENITENVRTIKSIPLRLQGTGWPTRIEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIF- 250 + K F +N E + G K + NPRNAA+G LR+L+ R L F+ + +G Sbjct: 176 MPKAGFEKMNAEALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVIQGGTL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 YE +++ G P++ ++ + + YY ++ + RS LPY+IDG+V KVD+ + Sbjct: 236 VDSHYERFLQLKGWGLPMSPETKRVASLDEVKVYYQDIMTRRSELPYEIDGVVIKVDDIA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++N Sbjct: 296 LQEQLGFVARAPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +++GD V+++RAG+VIP++V ++ R A+ F Sbjct: 356 ATLHNADEIERL-----------GVKIGDTVVIRRAGDVIPQIVSVVNELRPETAREILF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS V R A RC+GGL C AQ+ E LKHFVSR A +++GLG + Sbjct: 405 PAQCPVCQSDVERIEGE------AVARCSGGLVCQAQRKEALKHFVSRKALDVDGLGDKV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + PAD+F L+ ++ + G S N+ +++N + +L Sbjct: 459 IEQLVDKE----MVSTPADLFRLRA------GELTVLERMGPKSAQNIVNALNTAKATTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF++SLGIR VG A +LA ++L+ + LI VP VG I+A Sbjct: 509 PRFLYSLGIREVGEATAMNLAHHFLTLDAIREAT----------IEQLIEVPDVGTIVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 + F+ RN VE L+ +I + + K +V TGTL ++ R A+ Sbjct: 559 HVHAFFAQERNQKVVEELIALGIHWQAIAPKTDDEPQPLAGKVVVLTGTLSQLSRSDAKA 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+ TDI+ G+ GSKL KAQ+LG++I +EE + ++ Sbjct: 619 ALQALGAKVTGSVSKNTDILFAGEAAGSKLAKAQELGIEICDEEDLIAMI 668 >gi|91784125|ref|YP_559331.1| NAD-dependent DNA ligase [Burkholderia xenovorans LB400] gi|123358676|sp|Q13XB0|DNLJ_BURXL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91688079|gb|ABE31279.1| NAD-dependent DNA ligase [Burkholderia xenovorans LB400] Length = 688 Score = 574 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 258/722 (35%), Positives = 391/722 (54%), Gaps = 49/722 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 P+ + + + L E+ + YY +P + D+EYD L + ++I PDL Sbjct: 4 TPVSPPATSAPAERAAWLRAELERANYAYYVLDQPDLPDAEYDRLFKELESIETEHPDLI 63 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS- 125 P+ P ++GGE V H P LSL + ED+ F R+ K Sbjct: 64 V---PDSPTQRVGGEAASGFEPVVHEQPMLSLNNGFADEDIVAFDKRVGDALGKNASEPP 120 Query: 126 --IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-P 182 + + E K DG I++RY G FV A+ RGDG +GE+V+ +R I +IP L P Sbjct: 121 VPVEYAAELKFDGLAISLRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLRLKGKRVP 180 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 +++VRGEV + K DF LN+ A +K +ANPRNAA+G LR+L+ R L+FF + Sbjct: 181 HVLDVRGEVLMFKRDFERLNERQRAAEQKEFANPRNAAAGSLRQLDSKITAQRPLSFFSY 240 Query: 242 GLGK-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 G+G E+L + LG PVN + G++ +++ + R LPYDID Sbjct: 241 GIGVLEGMDMPATHSELLDWYKELGLPVNGERAVVHGAEGLLGFFHAVGEKREKLPYDID 300 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+VYKV+ Q+ LG +R+PR+ ++HKF ++A TRL+ ID+Q+GRTG +TPVARLEP Sbjct: 301 GVVYKVNRRDEQEALGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAVTPVARLEP 360 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV +++ Sbjct: 361 VFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSALLDR 409 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R DA+ F P+ CP+C S + R + A RCTGGL C AQ+ + L HF R A Sbjct: 410 RPDDAREFVMPTHCPVCGSNIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRA 463 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +I+GLG++ +D + +R PAD+F L + + F + S NL D Sbjct: 464 LDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLD 513 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 S+ K ++ +L RFI++LGIRHVG A+ LAK++ S +L+ Sbjct: 514 SLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SVEALLE 563 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGT 657 V VG ++A++I +F+ N +E L + K + K +V TGT Sbjct: 564 VNDVGPVVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPKAPQGVLAGKTVVLTGT 623 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L + R +A+E + GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ L Sbjct: 624 LPSLAREEAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMRKL 683 Query: 718 LQ 719 L+ Sbjct: 684 LE 685 >gi|308050127|ref|YP_003913693.1| DNA ligase, NAD-dependent [Ferrimonas balearica DSM 9799] gi|307632317|gb|ADN76619.1| DNA ligase, NAD-dependent [Ferrimonas balearica DSM 9799] Length = 685 Score = 574 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 250/726 (34%), Positives = 386/726 (53%), Gaps = 54/726 (7%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 L P +S QA+ + L Q ++ ++ YY P + D+EYD L R A+ P L Sbjct: 4 LPPKNDMS--QAKDRIEQLSQLLNDYNHQYYVLDNPSVPDAEYDRLMRELQALEAEHPAL 61 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 P+ P ++GG V H P LSL+ N E+ F R+ Sbjct: 62 ---RQPDSPTQRVGGAPAGQFQSVAHLKPMLSLDNAMNEEEFSAFHQRLADRLG---SGD 115 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184 I + EPK+DG +++ Y G AA RGDG +GE+++ +R I ++P LS P + Sbjct: 116 IQYCAEPKLDGIAVSLIYRDGLLERAATRGDGTTGEEITTNVRTIKSVPLRLSGKGYPAL 175 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGL 243 +EVRGE ++ K F A+N + +A G K + NPRNAA+G LR+L+ R L F+ + + Sbjct: 176 LEVRGEAFMPKAGFEAMNAKAMAAGEKTFVNPRNAAAGSLRQLDSRITANRPLAFYAYAV 235 Query: 244 GK---TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 G A L ++ G PV+ V A + Y+ + R LPY+ID Sbjct: 236 GVVEGIDTAMADSHSGQLAQLAQWGLPVSPIVETAAGEAAALDYFRRIGQQRPDLPYEID 295 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V KVD + Q+QLG AR+PRW I+ KF ++ T L D++ Q+GRTG +TPVARLEP Sbjct: 296 GVVIKVDSLAQQEQLGFVARAPRWAIACKFPAQEEMTLLKDVEFQVGRTGAVTPVARLEP 355 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V +GG ++NATLHN D I L +++GD V+++RAG+VIP++V ++ Sbjct: 356 VFVGGVTVSNATLHNADEIARL-----------GVKIGDTVIIRRAGDVIPQIVSVVAER 404 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R DA+ FPS CP+C S+V R A RC+GGL C AQ+ E +KHF SR A Sbjct: 405 RPDDARDIEFPSACPVCASKVERFEGE------AVARCSGGLFCEAQRKEAIKHFASRKA 458 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +++GLG + ++ E + PAD+FTL S +++ + G S NL Sbjct: 459 LDVDGLGDKLVELMVDRE----LVATPADLFTL------SASRLTMLPRMGTKSAQNLVA 508 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 ++++ R +L RF+++LGIR VG A +LA+++ + + D +LI Sbjct: 509 ALDQARTTTLPRFLYALGIREVGEATAANLARHFQTLEALMAA----------DTDALIE 558 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENKKLVFTG 656 V VG+++A+ + F++ P N+ ++AL V + ++ + V TG Sbjct: 559 VDDVGEVVAKHVYYFFRQPHNLEVIQALTDTEGANVHWPAIEAVAEEAQPLKGQTWVLTG 618 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL ++ R +A+ + LGA VS +S+ TD ++ G+ GSKL KA LGV +++E+ + Sbjct: 619 TLSQMGRSEAKAALEALGAKVSGSVSKNTDTLVAGEKAGSKLTKATDLGVPVLDEDGLVA 678 Query: 717 LLQQYN 722 LL QYN Sbjct: 679 LLAQYN 684 >gi|53803401|ref|YP_114852.1| DNA ligase, NAD-dependent [Methylococcus capsulatus str. Bath] gi|81681278|sp|Q604U8|DNLJ_METCA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|53757162|gb|AAU91453.1| DNA ligase, NAD-dependent [Methylococcus capsulatus str. Bath] Length = 673 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 254/713 (35%), Positives = 387/713 (54%), Gaps = 47/713 (6%) Query: 12 LS-IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 +S + ++ L +EI +H+ YY+ P+I D+EYD L AI +P+L Sbjct: 1 MSVPAEVVEKARKLREEIEFHNVRYYRLDDPLITDAEYDRLMAELLAIEARYPELV---T 57 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P+ P ++G + +V H +P LSLE ++ EDL F R+ + + +++ + Sbjct: 58 PDSPTQRVGAPPVEAFTEVRHEVPMLSLENAFSEEDLTAFDRRVRKELSR---DTLEYVA 114 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRG 189 EPK+DG + + Y+ G V AA RGDG GEDV+ +RA+ IP L + P+ E RG Sbjct: 115 EPKLDGLAVNLLYQDGVLVRAATRGDGEVGEDVTHNVRAVRAIPLRLKGEDFPDRFEARG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTS 247 EV++ K FLALN+ G K + NPRNAA+G LR+L+ +R L+F+ +G+G Sbjct: 175 EVFMPKRGFLALNERARRSGEKTFVNPRNAAAGSLRQLDARVTASRPLSFYAYGIGAFPD 234 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 Q+E+L+ ++ G PV+ R G + YY + R LPYDIDG+VYKVD Sbjct: 235 ARLPATQHELLESLQRWGLPVSPEYRVVRGAAGCLEYYRSLGERRHDLPYDIDGVVYKVD 294 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + Q LG +R+PRW I+HKF ++A TR++ ID+Q+GRTG+LTPVARLEPV +GG Sbjct: 295 DLKAQAGLGFVSRAPRWAIAHKFPAEEARTRVVGIDVQVGRTGVLTPVARLEPVFVGGVT 354 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +TNATLHN D I+ +D+R GD V+V+RAG+VIP++V ++ R P A+P Sbjct: 355 VTNATLHNADEIRR-----------KDVRPGDTVIVRRAGDVIPEIVRVVPELRKPGAEP 403 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P CP C S V + RC+GGL C AQ E +KHF SR A +IEGLG Sbjct: 404 FRMPEVCPECGSAVEAEPGE------VLARCSGGLYCPAQHKESIKHFASRRAMDIEGLG 457 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + +D + I AD++ L + + G+ S NL ++ + + Sbjct: 458 DKLVDQLVGRK----LIATVADLYRLDLDRLAG------LDRMGEKSAANLLAALERSKR 507 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L RF+++LGIR VG A+ L++++ S + + L+ V VG + Sbjct: 508 TTLARFLYALGIRDVGEVTAKVLSEHFGSLEALMEATE----------EELLAVADVGPV 557 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +++ I F+ P N + LL ++ V TGTL + R +A+ Sbjct: 558 VSRHIRLFFAQPHNREVISQLLACGVSWEKPAPAPRKLPLQGLVFVLTGTLASMSRDEAR 617 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA + +SR T ++ G PGSKL+KA +LGV +++E+ FL LL++ Sbjct: 618 ARLEALGAKCTGSVSRNTSFVVAGSEPGSKLDKASELGVPVLDEKGFLDLLER 670 >gi|297616809|ref|YP_003701968.1| DNA ligase, NAD-dependent [Syntrophothermus lipocalidus DSM 12680] gi|297144646|gb|ADI01403.1| DNA ligase, NAD-dependent [Syntrophothermus lipocalidus DSM 12680] Length = 668 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 244/710 (34%), Positives = 377/710 (53%), Gaps = 47/710 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E R+ L +EI HD YY +P+I D+EYD L R + A+PDL P+ Sbjct: 1 METPRERAEKLREEIRKHDYHYYVLDQPLISDAEYDRLFRELVELEQAYPDLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE+ V H +P LSL+ +N +LR F R+ D ++ + E K Sbjct: 58 PTQRVGGEVLKGFTPVQHRVPLLSLDNAFNERELRDFNRRLKERLG---DEAVAYVCELK 114 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I + Y+ G + A RGDG GEDV+A IR I ++P L+ +P +EVRGEVY+ Sbjct: 115 IDGVSIALVYQDGVLMSGATRGDGIVGEDVTANIRTIKSLPLRLTYPLP-RVEVRGEVYM 173 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 K F LN E G K +ANPRNAA+G +R+L+P R L V+ + Sbjct: 174 PKEAFARLNREREDRGEKTFANPRNAAAGSIRQLDPKVTAGRTLGLLVYDILHLEGKEID 233 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L+ + LGFPV+ R + ++ Y E + R LPY+IDG+V K++ + Sbjct: 234 SQRETLEFLSELGFPVDRNFRWCASLDEVLEYCEEWQGRRHELPYEIDGVVVKLNSLPAR 293 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG A+SPRW I++KF ++ T+++ I++ +GRTG++TP A +EPV++ G ++ A+ Sbjct: 294 QLLGATAKSPRWAIAYKFPAEEKETKIVAIELNVGRTGVITPTAVMEPVSLAGTTVSRAS 353 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I+ +DIRVGD V+V +AG++IP+VV + +R F P Sbjct: 354 LHNYDLIR-----------EKDIRVGDMVVVHKAGDIIPEVVRSLPEKRTGKEIEFKMPD 402 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C SRVVR A+RC + C A+ E L F SR+A +IEGLG ++ Sbjct: 403 KCPACGSRVVRFSGE------VAYRCDN-INCPARLKESLIFFASREAMDIEGLGPALVE 455 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + AD++ L+ + + G S NL ++ + + L R Sbjct: 456 QLVDR----GMVSNVADLYYLRAEELAG------LERMGQKSAANLIRALEQSKGRPLHR 505 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 + +LGIR+VG + AR LA++Y + F ++ D L+ +P +G+ IA+++ Sbjct: 506 LLNALGIRYVGLKTARILAEHYRDIERF----------SDIDREELMSIPEIGEKIAESV 555 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ PRN ++ L K ++ S+ K V TG L+ + R++A + + Sbjct: 556 TAFFAEPRNWDSIHKLKKAGVNTVEPEFSMAQDSQFAGKTFVLTGALESMTRNEATKAIE 615 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 G V+ +SRKTD ++ G +PGSK +KA LGV +++E QFL LL + Sbjct: 616 DRGGKVTNSVSRKTDFVVAGRDPGSKYDKAVALGVTVLDENQFLQLLGRQ 665 >gi|115352108|ref|YP_773947.1| DNA ligase [Burkholderia ambifaria AMMD] gi|122322835|sp|Q0BE10|DNLJ_BURCM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|115282096|gb|ABI87613.1| DNA ligase, NAD-dependent [Burkholderia ambifaria AMMD] Length = 691 Score = 573 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 256/713 (35%), Positives = 384/713 (53%), Gaps = 52/713 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L ++ + YY +P + D+EYD L + PDL P+ P ++ Sbjct: 15 ARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLETDHPDLV---TPDSPTQRV 71 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132 GGE+ V H P LSL + ED+ F R+ K D + + + E Sbjct: 72 GGEVAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALGKTTDLAGSVTDPVEYACEL 131 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191 K DG I++RYE G FV A+ RGDG +GEDV+ +R I +IP L P +++VRGEV Sbjct: 132 KFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAHVPALLDVRGEV 191 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249 + K DF LN+ A ++ +ANPRNAA+G LR+L+P R L+FF +G+G Sbjct: 192 LMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMP 251 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +L G PVN G++ ++ ++ R +LPYDIDG+VYKV+ Sbjct: 252 MPDTHSALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEKRESLPYDIDGVVYKVNRR 311 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q +LG +R+PR+ ++HKF ++A TRL+ ID+Q+GRTG +TPVARLEPV +GGA +T Sbjct: 312 DEQDRLGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARLEPVFVGGATVT 371 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA F Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGALLDRRPDDAAEFV 420 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ Sbjct: 421 MPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 474 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + +R PAD+F L + + F + S NL DS+ K ++ + Sbjct: 475 IIDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTT 524 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RFI+ LGIRHVG A+ LAK++ S L+ V VG I+A Sbjct: 525 LARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA----------SIEELLEVNDVGPIVA 574 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++I +F+ N +E L + + + K +V TGTL + R A Sbjct: 575 ESIHQFFAEEHNRTVIEQLRAPGKVTWAEGPPAPRAPQGVLAGKTVVLTGTLPNLTRDAA 634 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E+ LL+ Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEDGLHQLLE 687 >gi|220931078|ref|YP_002507986.1| DNA ligase, NAD-dependent [Halothermothrix orenii H 168] gi|254781343|sp|B8D122|DNLJ_HALOH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219992388|gb|ACL68991.1| DNA ligase, NAD-dependent [Halothermothrix orenii H 168] Length = 670 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 256/708 (36%), Positives = 387/708 (54%), Gaps = 49/708 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + +E+ L ++I YH+ YY P I D+E+D L +R + P L P+ P Sbjct: 3 SKVEQEIRDLREKIRYHEYRYYVLDDPEISDAEFDELIQRLIDLEEKHPGLV---TPDSP 59 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GGE KV H +P LSL +N DL F RIYR D I F +E KI Sbjct: 60 TQRVGGEPLDKFDKVEHRVPMLSLGNAFNEGDLTNFARRIYRLL---DTGKIDFVVEHKI 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG + Y+ G+ + A RG+G GEDV+A I+ IP++P L ++ IEVRGEVYI Sbjct: 117 DGLSAILTYQGGRLIRGATRGNGVVGEDVTANIKTIPSVPLRLKKDV--DIEVRGEVYIK 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 K+DF LN+ + G +P+ANPRNAA+G +R+L+P R L+F + + + Sbjct: 175 KDDFSKLNERRLKKGEEPFANPRNAAAGSIRQLDPRLAAARPLSFIAYDVVAYEGEGLQT 234 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 L+ +R LGF N R+ + +V+ + R LP++IDG+V KV+E L++ Sbjct: 235 HVGALELLRELGFK-VNWYRKCDDITEVVNICKDWVDKREELPFEIDGMVIKVNELGLRE 293 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 QLG A+SPRW I++KF +Q +T + DI I +GRTG LTP A LEPV + G+ ++ ATL Sbjct: 294 QLGATAKSPRWAIAYKFPAQQKTTVVKDIIISVGRTGALTPTAVLEPVEVDGSTVSRATL 353 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED I+ +D+R+GD VLV++AG+VIP+VV +I ++R Q F P Sbjct: 354 HNEDEIRR-----------KDVRIGDHVLVQKAGDVIPEVVKVIKSKRDGSEQIFHMPET 402 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C VVR+ A RC C AQ+ E + HFVSR+A NI+G+G +D Sbjct: 403 CPACGGEVVREEGE------AVLRCVNVTGCPAQRREGILHFVSRNAMNIDGVGPALIDQ 456 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + I AD++ L++ + G+ S TN ++I ++ L R Sbjct: 457 LLEK----GLIEDYADLYYLKKEDLI------PLERMGEKSATNAIEAIRASKDRPLFRV 506 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGIRHVG +AR L + Y S + + L+ + +G IA++I+ Sbjct: 507 IFALGIRHVGLGVARVLTEKYRSLSDLMRASG----------EELVAIDEIGPTIARSII 556 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 EF++ P N + L + + ++ + + K VFTG L R +A++ V Sbjct: 557 EFFKEPHNREVINKLKEAGVRLEEKENGKEEQNLYLSGKTFVFTGKLDGFTRSEARDKVI 616 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G V++ +SRKTD ++VGD+PGSK +KA++LGV I++E++F +L+ Sbjct: 617 AAGGKVTSSVSRKTDYVVVGDSPGSKYDKARELGVTILDEDKFKEVLK 664 >gi|225181787|ref|ZP_03735225.1| DNA ligase, NAD-dependent [Dethiobacter alkaliphilus AHT 1] gi|225167561|gb|EEG76374.1| DNA ligase, NAD-dependent [Dethiobacter alkaliphilus AHT 1] Length = 667 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 253/709 (35%), Positives = 387/709 (54%), Gaps = 45/709 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + +QA + + L QEI H+ Y+ +P I D+E+D L ++ +A+ FPDL P Sbjct: 1 MDRQQALETVEKLRQEIDDHNYRYHVLDEPQISDAEFDDLMQKLEAMEAQFPDLV---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG+ ++TH +P LSL NIEDLR F+ R R + + F +E Sbjct: 58 DSPTQRVGGKPLEGFEQITHRVPMLSLSNALNIEDLRDFVRRAIRLVPEA---ELEFVVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG ++++YE+G+FV A RGDG GED++ +R + +IP L L P +EVRGEV Sbjct: 115 LKVDGLAVSLQYEEGRFVRGATRGDGEVGEDITHNLRTVQSIP--LRLRKPLTLEVRGEV 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ ++ FL LN+E A G+ +ANPRNAA+G LR+L+P R L+ +GLG +S++ Sbjct: 173 YMPRSSFLKLNEERQAQGQPLFANPRNAAAGSLRQLDPKVAAERNLDMVSYGLGYSSDVT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y+ L ++ LG +N V +VSY + R LP+DIDGLV K+++ S Sbjct: 233 PSSHYDALMTLKELGMRINPHVVVLRELEDVVSYCESWREKRYELPFDIDGLVIKINDRS 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG A+SPRW I++KF +QA TR+ I +Q+GR G LTP+A LEPV + G ++ Sbjct: 293 LQEELGTTAKSPRWAIAYKFPAEQAVTRVKAITVQVGRIGTLTPLAELEPVTLAGTVVKR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED ++ +D+RVGD V+V++AG++IP+VV+++ ++R +PF Sbjct: 353 ASLHNEDILR-----------EKDVRVGDHVIVQKAGDIIPEVVEVVKSKRTGAEEPFEM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C S R + C AQ +ER+ HF SR A +IEG+G Sbjct: 402 PKHCPACGSDATRLPGEVALR-------CFNPVCPAQVMERITHFASRSAMDIEGMGPAV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + A I ADI++L +++ + ++ G+ SV NL +I K + L Sbjct: 455 VLQLLD----AGLIADVADIYSLPDKKE----ALLSLERMGEKSVENLLAAIEKSKKQPL 506 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R ++ LGIR VG AR L +++ S + L V VG IAQ Sbjct: 507 WRLLYGLGIRFVGDRTARLLVEHFNSMEKLMAA----------SAEELEAVDEVGPKIAQ 556 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ EF+ P + +E L + ++ K V TGTL R +A E + Sbjct: 557 SVTEFFSLPESGELIERLRAAGLKLKEEEAEAKDLPLQGKTFVLTGTLPTYSRDEAAELI 616 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G V+ +S+KTD ++ G+ GSKLEKA++L V I++EE LL Sbjct: 617 EDAGGRVTGSVSKKTDYVVAGEKAGSKLEKAEKLAVTILDEEGLQSLLN 665 >gi|253689765|ref|YP_003018955.1| DNA ligase, NAD-dependent [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756343|gb|ACT14419.1| DNA ligase, NAD-dependent [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 681 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 252/710 (35%), Positives = 394/710 (55%), Gaps = 51/710 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ L + + +H+ Y+ P I D EYD L + A+ P+L S + P ++G Sbjct: 14 RVAELRRVLRHHEYKYHVEDAPEIPDVEYDKLMQELKALEADHPELVTS---DSPTQRVG 70 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + +V H +P LSL+ +++ E F RI K+ + + F E K+DG + Sbjct: 71 AAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRL--KNGDDLTFCCELKLDGLAV 128 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDF 198 ++ YE G V AA RGDG +GE++++ IR + IP L P +EVRGEV++ + F Sbjct: 129 SLLYEDGVLVQAATRGDGTTGENITSNIRTVAAIPLRLEGENIPRRVEVRGEVFMKHSGF 188 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIFAKGQYE 256 LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G +E Sbjct: 189 EKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPASHWE 248 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + + G PV++ ++ ++ +Y ++ RS+L +DIDG+V KVD LQ++LG Sbjct: 249 RLMQFKAWGLPVSDKIKLCTGPAEVLDFYRHVEQTRSSLGFDIDGVVVKVDSLELQERLG 308 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++NATLHN Sbjct: 309 FVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAGVIVSNATLHNA 368 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L +++GDRV+V+RAG+VIP++V I+ +ER QP FPS CP+ Sbjct: 369 DEIERL-----------GLQIGDRVIVRRAGDVIPQIVGIVESERPETVQPIVFPSACPV 417 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S V R A RCTGGL C AQ+ E LKHFVSR A ++EG+G + +D + Sbjct: 418 CGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIDQLVE 471 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 E ++ PAD+F L S + + G S TNL +++ K ++ +L RF+++ Sbjct: 472 KE----YVKTPADLFRL------SAGIMTGLDRMGPKSATNLVNALEKAKSTTLARFLYA 521 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG A +LA ++ S + D +L+ VP VG ++A + F Sbjct: 522 LGIRDVGESTAANLAAHFGSLEALFAA----------DEETLLAVPDVGKVVAAHVRHFL 571 Query: 617 QNPRNICAVEALLKEVSPSI------GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 + N + L +I + + S K +V TG+L + R +A++ + Sbjct: 572 EEEHNQTVIRELTDPAGINIHWPEVVVVKAEEIDSPFAGKTVVLTGSLTILSRDEAKDRL 631 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL + Sbjct: 632 TALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDEAEMIRLLGE 681 >gi|229542656|ref|ZP_04431716.1| DNA ligase, NAD-dependent [Bacillus coagulans 36D1] gi|229327076|gb|EEN92751.1| DNA ligase, NAD-dependent [Bacillus coagulans 36D1] Length = 668 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 247/702 (35%), Positives = 381/702 (54%), Gaps = 53/702 (7%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 L + ++ + YY +P + D+EYD L R I +A P+L P+ P ++GGE Sbjct: 12 ELRKLLNQYSYEYYVLDRPSVPDAEYDRLLRELQEIENAHPELI---TPDSPTQRVGGEP 68 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 KV H P LSL +N DLR F R+ + + E KIDG I+++ Sbjct: 69 LSGFAKVVHDTPMLSLANAFNEADLRDFDRRVR----ETAGYRYEYVCELKIDGLAISLK 124 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 YE G FV + RGDG GED++A +R + +IP L+ + IE RGE ++ K F ALN Sbjct: 125 YENGLFVQGSTRGDGTIGEDITANLRTVRSIPLRLNEPV--TIEARGECFMPKKSFEALN 182 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 G +P+ANPRNAA+G LR+L+P +R L+ F++ +G T+ + E L + Sbjct: 183 RIKEENGEEPFANPRNAAAGSLRQLDPKIAASRNLDTFMYAIGDTTGLDISAHSEGLAYL 242 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 + LG VN R ++ + E R LPY+IDG+V KV++++ + LG +S Sbjct: 243 KRLGLKVNKETRICRDIGEVLKFIAEWTEKRPALPYEIDGIVIKVNDYAQEAALGTTVKS 302 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW I++KF ++ T+L I++++GRTG++TP A L PV + G + ATLHNED I+ Sbjct: 303 PRWAIAYKFPAEEVVTKLTGIEVKVGRTGVVTPTAILNPVRVAGTTVQRATLHNEDLIR- 361 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +DIR+GD V+VK+AG++IP+VV I R + Q FS PS CP C S + Sbjct: 362 ----------EKDIRIGDYVVVKKAGDIIPEVVRPIPERRTGEEQAFSMPSHCPDCGSEL 411 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 VR + A RC C AQ E L HFVSR+A NIEGLG++ + F E Sbjct: 412 VRLEDE------VALRCINP-NCPAQIREGLIHFVSRNAMNIEGLGEKVISQLFAHE--- 461 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 I ADI+ L++ ++ + G+ SV+NL +I + SLE+ +F LGIRH Sbjct: 462 -LIHNVADIYRLKKE------ELLQLERMGEKSVSNLLAAIEASKKNSLEKLLFGLGIRH 514 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 VGA+ A+ LA ++ + + ++ L +P +G+ +A +I +++N Sbjct: 515 VGAKAAKILAAHFETMERLSKATR----------EELEAIPDIGEKMADSIAAYFENEEA 564 Query: 622 ICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + V L + + ++N S K +V TG L + R++A+E + LGA Sbjct: 565 LGLVRELAALGVNMVYKGPKRAEKRNADSPFAGKTVVLTGKLVNMTRNEAKEKLEALGAN 624 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 V+ +S+ TD++I G++ G+KL KA+QLG+++ +E FL L Sbjct: 625 VTGSVSKNTDLVIAGEDAGTKLTKAEQLGIEVWDEAAFLERL 666 >gi|50122504|ref|YP_051671.1| NAD-dependent DNA ligase LigA [Pectobacterium atrosepticum SCRI1043] gi|81644069|sp|Q6D165|DNLJ_ERWCT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|49613030|emb|CAG76481.1| DNA ligase [Pectobacterium atrosepticum SCRI1043] Length = 681 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 251/719 (34%), Positives = 397/719 (55%), Gaps = 51/719 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++ L + + +H+ Y+ P I D EYD L + A+ P+L S + Sbjct: 1 MNAVALRVAELRRVLRHHEYKYHVEDAPEIPDIEYDKLMQELKALEADHPELVTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F RI K+ + + F E K Sbjct: 58 PTQRVGAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRL--KNGDDLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE+G V AA RGDG +GE++++ IR + IP L P +EVRGEV+ Sbjct: 116 LDGLAVSLLYEEGILVQAATRGDGTTGENITSNIRTVGAIPLRLEGENIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MKHGGFEKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +E L + + G PV++ ++ ++ +Y +++ RS+L +DIDG+V KVD + Sbjct: 236 PASHWERLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSSLGFDIDGVVVKVDSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQERLGFVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +++GDRV+V+RAG+VIP++V I+ +ER QP F Sbjct: 356 ATLHNADEIERL-----------GLQIGDRVIVRRAGDVIPQIVGIVESERPETVQPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A ++EG+G + Sbjct: 405 PAACPVCGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVSRRALDVEGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E ++ PAD+F L S + + G S NL +++ K ++ +L Sbjct: 459 IDQLVEKE----YVKTPADLFRL------SAGIMTGLDRMGPKSAMNLVNALEKAKSTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ S + D +L+ VP VG I+A Sbjct: 509 ARFLYALGIRDVGESTAANLAAHFGSLETLFAA----------DEDALLEVPDVGKIVAA 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG------RHEKNVSSEIENKKLVFTGTLQKIQRH 664 + F + N + L +I + + + S K +V TG+L + R Sbjct: 559 HVRHFLEEEHNQTVIRELTDPAGINIYWPEVKVVNAEEIDSPFAGKTVVLTGSLSILSRD 618 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 +A++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL + Sbjct: 619 EAKDRLTALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDEAEMIRLLNNHGD 677 >gi|254508455|ref|ZP_05120575.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus 16] gi|219548665|gb|EED25670.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus 16] Length = 669 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 255/712 (35%), Positives = 388/712 (54%), Gaps = 48/712 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S +Q +++L+ L + + YH YY P I D+EYD L R + P+L Sbjct: 1 MS-QQIQEKLNQLRESLHYHGIKYYVEDAPEIPDAEYDRLMRELIELEAQNPNLI---SV 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG V H IP LSL+ ++ ++L F R+ + F E Sbjct: 57 DSPSQRVGGAPLDGFTPVAHEIPMLSLDNAFDDDELNAFHKRMLDRVAGSSVEA--FCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 PK+DG +++ YE G V AA RGDG +GE+++ +R I IP L P IEVRGE Sbjct: 115 PKLDGLAVSLLYENGVLVQAATRGDGATGENITENVRTIKAIPLKLCGEGWPARIEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249 V++ K F LN+ + G K + NPRNAA+G LR+L+ R L+F+ + +G Sbjct: 175 VFMPKAGFEKLNEHALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLSFYAYSVGVVEGA 234 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 ++ YE +++ G P+ RQ + + +YY ++ R L Y+IDG+V KVD Sbjct: 235 ALSESHYERFLQLKSWGLPMCPETRQVESLDDVKAYYKDILQRRDQLAYEIDGVVIKVDS 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 LQ++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG + Sbjct: 295 IELQERLGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPVFVGGVTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I L +++GD V+++RAG+VIP++V ++ R DA+ Sbjct: 355 SNATLHNADEIARL-----------GVKIGDSVVIRRAGDVIPQIVSVVAERRPDDAREI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FPS CP+C S+V R A RC+GGL C AQ+ E LKHFVSR A +++GLG Sbjct: 404 VFPSQCPVCNSQVERVEGE------AVARCSGGLVCQAQRKEALKHFVSRKALDVDGLGV 457 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E + PAD+F L S I + G S N+ D++ K + Sbjct: 458 KVIEQLVDRE----MVETPADLFKL------SAGIITVLDRMGPKSAQNVVDALAKAKQT 507 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF++SLGIR VG A +LA ++ + + LI VP +GDI+ Sbjct: 508 TLARFLYSLGIREVGEATAANLALHFKTLDAIKAASH----------EQLIAVPDIGDIV 557 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A I F+ N ++ L+ + P I ++V + K +V TG+L ++ R+ A Sbjct: 558 ASHITAFFAQDNNQSVIDDLIAQGICWPDIEEKGEDVPQPLAGKTVVLTGSLSQLSRNDA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + LGA V+ +S+KTDI+ G+N GSKL KAQ+LGV+I E+ + LL Sbjct: 618 KAALQNLGAKVTGSVSKKTDILFAGENAGSKLSKAQELGVEIRTEQDLIDLL 669 >gi|148263373|ref|YP_001230079.1| DNA ligase, NAD-dependent [Geobacter uraniireducens Rf4] gi|190359259|sp|A5GA98|DNLJ_GEOUR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146396873|gb|ABQ25506.1| DNA ligase, NAD-dependent [Geobacter uraniireducens Rf4] Length = 672 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 256/709 (36%), Positives = 377/709 (53%), Gaps = 44/709 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + A + + L +EI+ H+ YY +P I D+EYD L R + A+PDL + Sbjct: 1 MDKQAAERRIQELHKEINRHNYLYYVEDRPEINDAEYDLLLRELQQLEKAYPDLVTA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G +VTH +P LSLE +N E++ F RI RF + I + E Sbjct: 58 DSPTQRVGAAPLEKFSQVTHRMPMLSLENAFNEEEMHDFDERIKRFLGLAAGDEIEYVCE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGE 190 PK+DG + + YE G F + RGDG+ GEDV+ +R + TIP L++ P EVRGE Sbjct: 118 PKMDGLAVELVYENGDFTVGSTRGDGYVGEDVTQNLRTVKTIPLSLAIATPPRLFEVRGE 177 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249 VY+ F LN E G P+ANPRNAA+G LR+L+ R L+ F + G Sbjct: 178 VYLGLAPFQKLNVEREEAGDPPFANPRNAAAGSLRQLDSRITARRPLSIFCYAAGSLEGH 237 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q ++L + G PVN +R+ + G+++YY+EM R +LPY+IDG+V KVD F Sbjct: 238 EFTSQSDLLNTIPGWGLPVNPLIRKVSGIGGVLAYYHEMSEKRESLPYEIDGVVVKVDSF 297 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ++LGE+ RSPRW I+ KF +QA T + +I Q+GRTG++TPVA L PV + G +++ Sbjct: 298 DLQRELGEKTRSPRWAIAWKFPPRQAVTVVEEIVPQVGRTGVITPVAHLRPVEVSGVMVS 357 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN + ++ +DIR GD V+V+RAG+VIP VV +I +R D QP Sbjct: 358 RATLHNWEEMEK-----------KDIRKGDTVVVERAGDVIPAVVKVITEKRKGDEQPLP 406 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C S VV+ + GL+C AQ E + HF SR A +I+G+G + Sbjct: 407 IPANCPECGSEVVKIPGEVAVR-------CLGLSCPAQIRETIIHFASRHAMDIDGMGDK 459 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ K ++ AD++ L++ GD NL +I + Sbjct: 460 YIEQLLK----LGLVKNVADLYYLKKDDFMRF------ERMGDKLAENLLGAIETSKQRE 509 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RFI++LGIRHVG A+ LA + S +N L+ + VG +A Sbjct: 510 LSRFIYALGIRHVGEHTAKLLANAFGSMENLEHASE----------EELLSIREVGPQVA 559 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 Q+I F+ N NI ++ + EK V K VFTG L + R A+ Sbjct: 560 QSIRTFFHNRNNIEVIDRMFNAGV-KPSVEEKRVGGRFTGKTFVFTGALTRFTRDDAKRM 618 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 V G + +S+KTD ++ G GSKL+KA+QLGVK++ E++FL +L Sbjct: 619 VENEGGHAAGSVSKKTDFVVAGAEAGSKLDKARQLGVKVLTEDEFLAML 667 >gi|332982281|ref|YP_004463722.1| DNA ligase, NAD-dependent [Mahella australiensis 50-1 BON] gi|332699959|gb|AEE96900.1| DNA ligase, NAD-dependent [Mahella australiensis 50-1 BON] Length = 665 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 242/708 (34%), Positives = 375/708 (52%), Gaps = 48/708 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E + ++ L Q I +H+ YY P I D+EYDAL R + + +P++ P+ P Sbjct: 5 EDVIQRVNELRQIIEHHNYMYYVLDSPEISDAEYDALMRELEQLESKYPEII---TPDSP 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG+++ V HS+P LSL +++ ++R F R+ + + + LE KI Sbjct: 62 TQRVGGQVSGQFQPVVHSVPLLSLNDVFSESEIRDFDRRVRAAL----NEDVQYVLEVKI 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG + + Y+ G F+ A RGDG GEDV+A +R I +IP L L +P +EVRGEV++ Sbjct: 118 DGLSVALTYQDGLFIRGATRGDGFVGEDVTANLRTIRSIP--LRLKMPINVEVRGEVFMP 175 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 K F LN++ G +ANPRNAA+G +R+L+P R+L+ FV L + + Sbjct: 176 KKYFYKLNEQREKDGLPLFANPRNAAAGSVRQLDPAITAQRHLDIFVFNLQRIEGYAFET 235 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E L ++ GF + + +T + + R LPY+IDGLV KV+ ++ Sbjct: 236 HVESLMFLKEQGFKIMPYLIPCDTIDEAIEQCRLWEGKRYELPYEIDGLVIKVNSLRQRE 295 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG +++PRW +++KF ++ + + I +Q+GRTG+LTP A LEPV + G ++ ATL Sbjct: 296 ILGNTSKTPRWAVAYKFPAERKESIIKHIVVQVGRTGVLTPTAVLEPVRLAGTTVSRATL 355 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNEDYIK +DIR+GD VLV++AG++IP+VV +I +R D + F P Sbjct: 356 HNEDYIK-----------EKDIRIGDHVLVQKAGDIIPEVVSVIKEKRTGDERIFEMPDK 404 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C + VR AA RCTG +C AQ L HF SRDA +IEGLG + Sbjct: 405 CPVCGADAVRIDGE------AARRCTGV-SCPAQVERGLIHFASRDAMDIEGLGPAVVRQ 457 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + IR ADI+ L+ + G S NL ++I ++ L R Sbjct: 458 LLNKK----LIRDEADIYYLKYEDLVK------LERMGPKSAQNLINAIQASKDRGLARL 507 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +++LGI VG A LA+ + + D L +P +G IA+++V Sbjct: 508 LYALGIPLVGTRAASILAERFGDIYELMKA----------DQAQLTAIPEIGPKIAESVV 557 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F++ + ++ L ++ ++ + V TGTL K R +A E + L Sbjct: 558 TFFKQEQTKDLIKRLETAGVRLTADKKQKGNAPLAGLTFVLTGTLSKYTREQATEIIEGL 617 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 G V+ +S+KTD +I GD PGSKL+KA QLGVK+++E +F +L+ Q Sbjct: 618 GGKVTGSVSKKTDYVIAGDGPGSKLDKALQLGVKVIDENEFEWLIGQE 665 >gi|296158912|ref|ZP_06841740.1| DNA ligase, NAD-dependent [Burkholderia sp. Ch1-1] gi|295890787|gb|EFG70577.1| DNA ligase, NAD-dependent [Burkholderia sp. Ch1-1] Length = 688 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 257/722 (35%), Positives = 393/722 (54%), Gaps = 49/722 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 P+ + + + L E+ + YY +P + D+EYD L + ++I PDL Sbjct: 4 TPVSPPATSAPAERAAWLRAELERANYAYYVLDQPDLPDAEYDRLFKELESIETEHPDLI 63 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS- 125 P+ P ++GGE V H P LSL + ED+ F R+ K Sbjct: 64 V---PDSPTQRVGGEAASGFEPVVHEQPMLSLNNGFADEDIVAFDKRVGDALGKNASEPP 120 Query: 126 --IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-P 182 + + E K DG I++RY G FV A+ RGDG +GE+V+ +R I +IP L P Sbjct: 121 VPVEYAAELKFDGLAISLRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLRLKGKRVP 180 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 ++++VRGEV + K DF LN+ A +K +ANPRNAA+G LR+L+ R L+FF + Sbjct: 181 QVLDVRGEVLMFKRDFERLNERQRAAEQKEFANPRNAAAGSLRQLDSKITAQRPLSFFSY 240 Query: 242 GLGK-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 G+G E+L + LG PVN + G++ +++ + R LPYDID Sbjct: 241 GIGVLEGMDMPATHSELLDWYKELGLPVNGERAVVHGAEGLLGFFHAVGEKREKLPYDID 300 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+VYKV+ Q+ LG +R+PR+ ++HKF ++A TRL+ ID+Q+GRTG +TPVARLEP Sbjct: 301 GVVYKVNRRDEQEALGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARLEP 360 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV +++ Sbjct: 361 VFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSALLDR 409 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R DA+ F P+ CP+C S + R + A RCTGGL C AQ+ + L HF R A Sbjct: 410 RPDDAREFVMPTHCPVCGSNIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRA 463 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +I+GLG++ +D + +R PAD+F L + + F + S NL D Sbjct: 464 LDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLD 513 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 S+ K ++ +L RFI++LGIRHVG A+ LAK++ S + +L+ Sbjct: 514 SLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMEA----------SVEALLE 563 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGT 657 V VG ++A++I +F+ N +E L + + + K +V TGT Sbjct: 564 VNDVGPVVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPRAPQGVLAGKTVVLTGT 623 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L + R +A+E + GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ L Sbjct: 624 LPSLAREEAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMRKL 683 Query: 718 LQ 719 L+ Sbjct: 684 LE 685 >gi|312796238|ref|YP_004029160.1| NAD-dependent DNA ligase [Burkholderia rhizoxinica HKI 454] gi|312168013|emb|CBW75016.1| NAD-dependent DNA ligase (EC 6.5.1.2) [Burkholderia rhizoxinica HKI 454] Length = 681 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 263/724 (36%), Positives = 399/724 (55%), Gaps = 52/724 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + P S ++ + + L E+ + YY +P I D+EYD L + + I Sbjct: 1 MSRMMFPP----SADRPAERAAWLRTELDRANHAYYVLDRPEIPDAEYDKLFKELEQIEA 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 PDL P+ P ++GG + + H +P LSL + D+ F R+ Q Sbjct: 57 DHPDLI---TPDSPTQRVGGAVAEGFAPIVHDVPMLSLNNGFEDSDVDAFDKRVSDVLQ- 112 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 + + E K DG I++RYE G+FV A+ RGDG +GEDV+A +R I ++P L+ N Sbjct: 113 --HGDVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTANVRTIRSLPLTLNGN 170 Query: 181 -IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNF 238 +P++I+VRGEV + K DF LN G++ +ANPRNAA+G LR+L+ R L+F Sbjct: 171 AVPKVIDVRGEVLMFKRDFERLNARQREAGQREFANPRNAAAGSLRQLDSRITAKRPLSF 230 Query: 239 FVHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 F +G+G +L +G PVN G++ ++ + + R++LPY Sbjct: 231 FAYGIGVLDGVPMPDTHSALLDWYVNMGLPVNKERAVVRGAAGLLVFFRGVGARRASLPY 290 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+VYKV+ Q +LG +R+PR+ ++HKF ++A TRLL I++Q+GRTG +TPVAR Sbjct: 291 DIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAEEALTRLLAIEVQVGRTGAITPVAR 350 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 LEP+ +GGA +TNATLHNED ++ +DI +GD V+V+RAG+VIP+VV I Sbjct: 351 LEPIFVGGATVTNATLHNEDEVRR-----------KDILIGDTVIVRRAGDVIPEVVGAI 399 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 R DA+PF+ P+ CP+C S + R + A RCTGGL C+AQ+ + L HF Sbjct: 400 KERRPVDARPFTMPTHCPVCGSAIERLPDE------AIARCTGGLVCAAQRKQALWHFAQ 453 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R A +I+GLG++ +D + IR PAD+F+L + + F D S N Sbjct: 454 RRALDIDGLGEKIIDQLVEQS----LIRTPADLFSL------GFATVAQLDRFADKSAQN 503 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L DS+ + R+ +L RFI++LGIRHVG AR LA+++ S + Sbjct: 504 LIDSLERARHTTLPRFIYALGIRHVGEATARDLARHFGSLNALIDASE----------EA 553 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFT 655 L+ V VG ++A+AI F+ P N +E L P + + + +V T Sbjct: 554 LLEVNDVGPVVAEAIRHFFSEPHNRMVIEQLRAAGVQWPEGPPAPRKPAGPLAGMTVVLT 613 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL + R A+E + GA V+ +S+KT+ ++ G + GSKL KA++LG+ I++EE Sbjct: 614 GTLPTLSREAAKERLEAAGAKVAGSVSKKTNYVVAGADAGSKLTKAEELGIPIVDEEGMR 673 Query: 716 FLLQ 719 LL+ Sbjct: 674 RLLE 677 >gi|227114832|ref|ZP_03828488.1| NAD-dependent DNA ligase LigA [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 684 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 255/727 (35%), Positives = 403/727 (55%), Gaps = 54/727 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 MK + P E + A ++ L + + +H+ Y+ P I D EYD L + A+ Sbjct: 1 MKPVKKEPAE---VNAAALRVAELRRVLRHHEYKYHVEDAPEIPDIEYDKLMQELKALEA 57 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 P+L S + P ++G + +V H +P LSL+ +++ E F RI Sbjct: 58 DHPELVTS---DSPTQRVGAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRL-- 112 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 K+ + + F E K+DG +++ YE G V AA RGDG +GE++++ IR + IP L + Sbjct: 113 KNGDDLTFCCELKLDGLAVSLLYENGVLVQAATRGDGTTGENITSNIRTVAAIPLRLEGD 172 Query: 181 I-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238 P +EVRGEV++ + F LN+E G K +ANPRNAA+G LR+L+P R L F Sbjct: 173 NIPRRVEVRGEVFMKHSGFEKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTF 232 Query: 239 FVHGLGK-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 F +G+G +E L + + G PV++ ++ ++ +Y +++ RS+L + Sbjct: 233 FCYGVGLLEGGELPASHWERLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSSLGF 292 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+V KVD LQ++LG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVAR Sbjct: 293 DIDGVVVKVDSLELQERLGFVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVAR 352 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 LEPV + G +++NATLHN D I+ L +++GDRV+V+RAG+VIP++V I+ Sbjct: 353 LEPVAVAGVIVSNATLHNADEIERL-----------GLQIGDRVIVRRAGDVIPQIVGIV 401 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 +ER +P FP+ CP+C S V R A RCTGGL C AQ+ E LKHFVS Sbjct: 402 ESERPETVRPIVFPAACPVCGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVS 455 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R A ++EG+G + +D + E ++ PAD+F L S + + G S TN Sbjct: 456 RRALDVEGMGDKIIDQLVEKE----YVKTPADLFRL------SAGIMTGLDRMGPKSATN 505 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L +++ K ++ +L RF+++LGIR VG A +LA ++ S + D + Sbjct: 506 LVNALEKAKSTTLARFLYALGIRDVGESTAANLAAHFGSLEALFAA----------DEDA 555 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI------GRHEKNVSSEIENKK 651 L+ VP VG ++A + F + N + L +I + + + S K Sbjct: 556 LLEVPDVGKVVAAHVRHFLEEEHNQTVIRELTDPAGINIHWPEVQVVNAEEIDSPFAGKT 615 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 +V TG+L + R +A++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E Sbjct: 616 VVLTGSLSILSRDEAKDRLTALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDE 675 Query: 712 EQFLFLL 718 + + LL Sbjct: 676 AEMIRLL 682 >gi|188533249|ref|YP_001907046.1| NAD-dependent DNA ligase LigA [Erwinia tasmaniensis Et1/99] gi|254781330|sp|B2VE40|DNLJ_ERWT9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|188028291|emb|CAO96149.1| DNA ligase [Erwinia tasmaniensis Et1/99] Length = 670 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 242/714 (33%), Positives = 397/714 (55%), Gaps = 51/714 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E + +++ L + +++ Y+ P + D+EYD L + A P+L + + Sbjct: 1 MESLQDKITHLRTLLRHYEYQYHVLDAPAVPDAEYDRLMGELRELEAAHPELLTT---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ ++ E R F R+ + DD + F E K Sbjct: 58 PTQRVGAAPLSAFEQVRHEVPMLSLDNAFDEESYRAFNKRVQDRLKSSDD--LTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YE+G+ V AA RGDG +GE+++A +R I IP LS + PE +EVRGEV+ Sbjct: 116 LDGLAVSLLYEQGELVRAATRGDGTTGENITANVRTIRAIPLRLSGDNIPERLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + F +N++ G+K +ANPRNAA+G LR+L+P R L FF +GLG Sbjct: 176 MPLAGFEKMNEQARRGGQKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGEM 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + LQ+ + G PV++ VR ++ ++ +Y+++++ R L +DIDG+V KVD Sbjct: 236 PRSHMARLQQFKAWGLPVSDRVRLCHSPSDVLDFYHQVEADRPALGFDIDGVVIKVDSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQITTVRDVEFQVGRTGAITPVARLEPVLVAGVMVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GDRV+++RAG+VIP+V+ ++ + A+ F Sbjct: 356 ATLHNADEIERL-----------GLRIGDRVVIRRAGDVIPQVMSVVESA--EGARDVIF 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R RCTGGL C AQ+ LKHFVSR A +I+G+G++ Sbjct: 403 PTHCPVCGSDVERVEGE------VVARCTGGLICGAQRKGALKHFVSRRALDIDGMGEKI 456 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D E ++ PA++F L K+ + G S N+ D++ K + + Sbjct: 457 IDQLVDKE----YVKNPAELFELTA------GKLTGLDRMGPKSAQNVVDALAKAKQTTF 506 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGI VG A +LA ++ + + D +LI VP VG ++A Sbjct: 507 ARFLYALGISEVGEATAANLAAHFGTLEALMAA----------DIDTLITVPDVGKVVAS 556 Query: 611 AIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + F N + L+++ + + + + S K +V TG+L + R A Sbjct: 557 HVRNFLDEESNREIIRLLVEKAGVNWPDVVVVKAEEIDSPFAGKTVVLTGSLSILSRDDA 616 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +E + LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E++ + LL + Sbjct: 617 KERLQALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEQEMMRLLGE 670 >gi|59712497|ref|YP_205273.1| NAD-dependent DNA ligase LigA [Vibrio fischeri ES114] gi|75353581|sp|Q5E3L1|DNLJ_VIBF1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|59480598|gb|AAW86385.1| DNA ligase, NAD(+)-dependent [Vibrio fischeri ES114] Length = 668 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 258/713 (36%), Positives = 401/713 (56%), Gaps = 50/713 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +SIEQ L L+Q+++YH YY P + D+EYD + ++ +I P+L Sbjct: 1 MSIEQT---LDELKQQLNYHAYRYYVEDSPELPDAEYDRMMQQLLSIESEHPELVTV--- 54 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GGE ++ H IP LSL+ ++ E+L F R+ K + F E Sbjct: 55 DSPSQRVGGEALDGFTQIQHEIPMLSLDNAFSDEELEAFEKRMNDRLISKPVS--LFCCE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 PK+DG +++ Y GK V A RGDG +GE+++ +R I IP L P +EVRGE Sbjct: 113 PKLDGLAVSLLYVDGKLVQAGTRGDGTTGENITENVRTIRCIPLTLQGEGWPTRLEVRGE 172 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE- 248 V++ K F ALN+ + G KP+ANPRNAA+G LR+L+ TR L+F+ + +G Sbjct: 173 VFMPKAGFEALNERALKRGEKPFANPRNAAAGSLRQLDSKITATRPLSFYAYSVGVIEGG 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Y+ +++ G P+ +Q ++ + +YY ++ R L Y+IDG+V KVD+ Sbjct: 233 ELETSHYQRFVQLKSWGLPMCEETKQCHSLTEVKAYYKDILERRDALKYEIDGVVIKVDD 292 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ+QLG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG + Sbjct: 293 IALQEQLGFVARAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVGGVTV 352 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I L + +GD V+++RAG+VIP++V ++ R D++ Sbjct: 353 SNATLHNADEIARL-----------GVHIGDTVIIRRAGDVIPQIVSVVEARRPTDSKAI 401 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 +P CP+C S + R A RC GL C AQ+ E LKHFVSR A +++GLG Sbjct: 402 VYPIHCPVCGSNLERVEGE------AVTRCGAGLVCQAQRKEALKHFVSRKALDVDGLGD 455 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E + PAD+F L S + + G S N+ D++NK + Sbjct: 456 KVVEQLVDKE----MVETPADLFKL------SAGLLTVLERMGPKSAQNVVDALNKAKAT 505 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF++SLGIR VG A +LA ++ + + + LI V VGDI+ Sbjct: 506 TLPRFLYSLGIREVGEATAANLAAHFYTLEAIQVAT----------FEQLIEVSDVGDIV 555 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A+ ++ F+ P N +E L + P I +++V + K +V TGTL K++R++A Sbjct: 556 AKHVLNFFAEPHNKTVIEDLQEMGIHWPEIKALDESVPQPLAGKVVVLTGTLHKLKRNEA 615 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + +LGA V+ +S+KTDI+ G+ GSKL KA++LGV++MNEEQ + LL Sbjct: 616 KAALQELGAKVTGSVSKKTDILFAGEAAGSKLAKAEELGVEVMNEEQLIELLN 668 >gi|166216287|sp|Q0HK31|DNLJ_SHESM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 688 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 248/713 (34%), Positives = 390/713 (54%), Gaps = 51/713 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + A+ + +L Q ++ H+ YY P I DSEYD L +R + +P + + Sbjct: 19 TPHNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAA---D 75 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GG ++TH P LSL+ ++ D F R+ + F EP Sbjct: 76 SPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVSDRVG-----EVSFCCEP 130 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEV 191 K+DG ++I Y G AA RGDG GED++ ++ I +IP L N PE++EVRGE Sbjct: 131 KLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVRGEA 190 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---KTS 247 ++ K F ALN+ K + NPRNAA+G LR+L+ +R L+F+ + LG TS Sbjct: 191 FMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVEPTS 250 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 AK YE LQ+++ G PV++ ++ + + +YY ++ + RS LP++IDG+V KV+ Sbjct: 251 HELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRSYLPFEIDGVVMKVN 310 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + Q+ LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV +GG Sbjct: 311 DIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVT 370 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN D I+ L + VGD V+++RAG+VIP++V I+ R DA+ Sbjct: 371 VSNATLHNADEIERL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPEDAKA 419 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 +FP CP+C S V R A RC+GGL C AQ+ E +KHF SR A +I+G+G Sbjct: 420 IAFPQHCPVCGSLVERLEGE------AVTRCSGGLFCEAQRKEAIKHFASRKALDIDGMG 473 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ E ++ PAD+F L + + + G S TNL +I + Sbjct: 474 DKIVEQLIDKE----LVQSPADLFKLPA------SMMTMLDRMGMKSATNLAQAIEAAKT 523 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L RF+++LGIR VG A +LA ++ S + LI+V +G++ Sbjct: 524 TTLPRFLYALGIREVGEATASNLATHFGSLEALRVAT----------IEQLIQVEDIGEV 573 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKA 666 +AQ + F+ P N+ ++AL+ + ++ + V TGTL ++ R+ A Sbjct: 574 VAQHVAHFFAQPHNLEVIDALIAAGVNWPTIAAPSADEQPLKGQTWVLTGTLNQLNRNDA 633 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK++ E++ L LL Sbjct: 634 KAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALLA 686 >gi|113969850|ref|YP_733643.1| DNA ligase, NAD-dependent [Shewanella sp. MR-4] gi|113884534|gb|ABI38586.1| DNA ligase, NAD-dependent [Shewanella sp. MR-4] Length = 690 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 248/713 (34%), Positives = 390/713 (54%), Gaps = 51/713 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + A+ + +L Q ++ H+ YY P I DSEYD L +R + +P + + Sbjct: 21 TPHNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAA---D 77 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GG ++TH P LSL+ ++ D F R+ + F EP Sbjct: 78 SPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVSDRVG-----EVSFCCEP 132 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEV 191 K+DG ++I Y G AA RGDG GED++ ++ I +IP L N PE++EVRGE Sbjct: 133 KLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVRGEA 192 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---KTS 247 ++ K F ALN+ K + NPRNAA+G LR+L+ +R L+F+ + LG TS Sbjct: 193 FMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVEPTS 252 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 AK YE LQ+++ G PV++ ++ + + +YY ++ + RS LP++IDG+V KV+ Sbjct: 253 HELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRSYLPFEIDGVVMKVN 312 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + Q+ LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV +GG Sbjct: 313 DIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVT 372 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN D I+ L + VGD V+++RAG+VIP++V I+ R DA+ Sbjct: 373 VSNATLHNADEIERL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPEDAKA 421 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 +FP CP+C S V R A RC+GGL C AQ+ E +KHF SR A +I+G+G Sbjct: 422 IAFPQHCPVCGSLVERLEGE------AVTRCSGGLFCEAQRKEAIKHFASRKALDIDGMG 475 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ E ++ PAD+F L + + + G S TNL +I + Sbjct: 476 DKIVEQLIDKE----LVQSPADLFKLPA------SMMTMLDRMGMKSATNLAQAIEAAKT 525 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L RF+++LGIR VG A +LA ++ S + LI+V +G++ Sbjct: 526 TTLPRFLYALGIREVGEATASNLATHFGSLEALRVAT----------IEQLIQVEDIGEV 575 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKA 666 +AQ + F+ P N+ ++AL+ + ++ + V TGTL ++ R+ A Sbjct: 576 VAQHVAHFFAQPHNLEVIDALIAAGVNWPTIAAPSADEQPLKGQTWVLTGTLNQLNRNDA 635 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK++ E++ L LL Sbjct: 636 KAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALLA 688 >gi|221198328|ref|ZP_03571374.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2M] gi|221208267|ref|ZP_03581271.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2] gi|221171915|gb|EEE04358.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2] gi|221182260|gb|EEE14661.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2M] Length = 691 Score = 572 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 256/713 (35%), Positives = 384/713 (53%), Gaps = 52/713 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L ++ + YY +P + D+EYD L R + PDL P+ P ++ Sbjct: 15 ARAAWLRDQLERANHAYYVLDQPDLPDAEYDRLFRELQQLESDHPDLV---TPDSPTQRV 71 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132 GG + V H P LSL + +D+ F R+ K D + + + E Sbjct: 72 GGAVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGKTTDLAGSVTDPVEYACEL 131 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191 K DG I++RYE G FV A+ RGDG +GEDV+ +R I +IP L + P +++VRGEV Sbjct: 132 KFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGDRVPAVLDVRGEV 191 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249 + K DF LN+ A ++ +ANPRNAA+G LR+L+P R L+FF +G+G Sbjct: 192 LMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMP 251 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +L LG PVN G++ ++ ++ R +LPYDIDG+VYKV+ Sbjct: 252 IPDTHSALLDWYEALGLPVNRERAVVYGAQGLLDFFRKVGEKRESLPYDIDGVVYKVNRR 311 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q +LG +R+PR+ ++HKF ++A T+L+ I +Q+GRTG +TPVARLEPV +GGA +T Sbjct: 312 DEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIGVQVGRTGAITPVARLEPVFVGGATVT 371 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA F Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFV 420 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ Sbjct: 421 MPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 474 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + +R PAD+F L + + F + S NL DS+ K ++ + Sbjct: 475 IIDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTT 524 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RFI++LGIRHVG A+ LAK++ S L+ V VG I+A Sbjct: 525 LARFIYALGIRHVGESTAKDLAKHFGSLDPIMNAT----------IDELLEVNDVGPIVA 574 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++I +F+ N +E L + K + K +V TGTL + R A Sbjct: 575 ESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDDA 634 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + GA V+ +S+KTD +I G GSKL KA+ LG+ +++E+ LL+ Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVIAGIEAGSKLAKAEALGIPVLDEDGLHQLLE 687 >gi|78066803|ref|YP_369572.1| DNA ligase (NAD+) [Burkholderia sp. 383] gi|123742568|sp|Q39F38|DNLJ_BURS3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|77967548|gb|ABB08928.1| DNA ligase (NAD+) [Burkholderia sp. 383] Length = 691 Score = 572 bits (1473), Expect = e-160, Method: Composition-based stats. Identities = 255/713 (35%), Positives = 384/713 (53%), Gaps = 52/713 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L ++ + YY +P + D+EYD L R + P+L P+ P ++ Sbjct: 15 ARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELV---TPDSPTQRV 71 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132 GGE V H P LSL + ED+ F R+ K D + + E Sbjct: 72 GGEAAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALDKTTDLAGSVTEPVEYACEL 131 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191 K DG I++RYE+G FV A+ RGDG +GEDV+ +R I +IP L P +++VRGEV Sbjct: 132 KFDGLAISLRYEQGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGEV 191 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249 + K DF LN+ A ++ +ANPRNAA+G LR+L+ R L+FF +G+G Sbjct: 192 LMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLDGMP 251 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +L LG PVN G++ ++ ++ R +LPYDIDG+VYKV+ Sbjct: 252 MLDTHSALLDWYESLGLPVNREREVVQGAEGLLGFFRKIGEKRESLPYDIDGVVYKVNRR 311 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q++LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +T Sbjct: 312 DEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVT 371 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA F Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFV 420 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ Sbjct: 421 MPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 474 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + +R PAD+F L + + F + S NL DS+ K ++ + Sbjct: 475 IIDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTT 524 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RFI+ LGIRHVG A+ LAK++ S L+ V VG I+A Sbjct: 525 LARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA----------SIEELLEVNDVGPIVA 574 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 +++ +F+ N +E L + K + K +V TGTL + R A Sbjct: 575 ESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPTLTRDAA 634 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ LL+ Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLVKAEELGIPVLDEDGLHQLLE 687 >gi|320157090|ref|YP_004189469.1| DNA ligase [Vibrio vulnificus MO6-24/O] gi|319932402|gb|ADV87266.1| DNA ligase [Vibrio vulnificus MO6-24/O] Length = 669 Score = 572 bits (1473), Expect = e-160, Method: Composition-based stats. Identities = 254/712 (35%), Positives = 395/712 (55%), Gaps = 48/712 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E ++ L L+Q++ YH YY P I D+EYD + R AI P+ Sbjct: 1 MS-ESKQQYLEELKQQLHYHAVRYYVEDNPEIPDAEYDRMMRELMAIEAEHPEWI---SV 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG S +VTH IP LSL+ ++ E+L F+ R ++ F E Sbjct: 57 DSPSQRVGGVALDSFRQVTHEIPMLSLDNAFSDEELESFLKRAQDRMPSAHIDA--FCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 PK+DG +++ YE G V AA RGDG +GE+++ +R I ++P L P IEVRGE Sbjct: 115 PKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIASVPLKLQGEGWPSRIEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V++ K F LND G K + NPRNAA+G LR+L+ TR L F+ + +G I Sbjct: 175 VFMPKAGFEKLNDIARKKGEKVFVNPRNAAAGSLRQLDSKITATRPLAFYAYSVGVVEGI 234 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + Y+ +++ G P+ + N + ++Y ++ + R LPY+IDG+V K+D+ Sbjct: 235 SLSSSHYQRFLQLKQWGLPMCPETKLVNGLESVKAFYADILNRRDALPYEIDGVVIKIDD 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +Q++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG + Sbjct: 295 IVIQEKLGFVARAPRWAIAYKFPAQEELTMLNDVEFQVGRTGAITPVAKLEPVFVGGVTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I+ L + VGD V+++RAG+VIP++V ++ + R D + Sbjct: 355 SNATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVKDRRKGDEKNI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CP+C S V R A RC+GGL C AQ+ E LKHFVSR A +++GLG Sbjct: 404 IFPTACPVCHSHVERIEGE------AVTRCSGGLVCQAQRKEALKHFVSRKALDVDGLGD 457 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E + PAD+FTL S + + G S N+ +++N + Sbjct: 458 KVIEQLVDKE----MVETPADLFTL------SAGVLTVLERMGPKSAQNIVNALNVAKET 507 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF++SLGIR VG A +LA+++ + + + LI VP +G+++ Sbjct: 508 TLARFLYSLGIREVGEATAANLARHFKTLEAIQTATH----------EQLIEVPDIGEVV 557 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKA 666 A+ I F+ +N V+AL+++ E + + K +V TGTL ++ R A Sbjct: 558 ARHITAFFAEEKNQRVVQALIEQGIVWPAVEELGSEIPQPLAGKVVVLTGTLTQLSRGDA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + +LGA V+ +S+KTDI+ G+ GSKL KAQ+LGV+I E+ L LL Sbjct: 618 KAALERLGAKVTGSVSKKTDIVFAGEAAGSKLTKAQELGVEIQTEQDLLALL 669 >gi|167039197|ref|YP_001662182.1| NAD-dependent DNA ligase [Thermoanaerobacter sp. X514] gi|256752857|ref|ZP_05493696.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus CCSD1] gi|300913208|ref|ZP_07130525.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X561] gi|307723778|ref|YP_003903529.1| NAD-dependent DNA ligase [Thermoanaerobacter sp. X513] gi|254781440|sp|B0K3S1|DNLJ_THEPX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166853437|gb|ABY91846.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X514] gi|256748259|gb|EEU61324.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus CCSD1] gi|300889893|gb|EFK85038.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X561] gi|307580839|gb|ADN54238.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X513] Length = 662 Score = 572 bits (1473), Expect = e-160, Method: Composition-based stats. Identities = 242/707 (34%), Positives = 384/707 (54%), Gaps = 49/707 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + L ++I+YH+ YY +P I D EYD L R + +P+L P+ P + Sbjct: 4 KERIKELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPELK---TPDSPSQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE TH +P LSL ++ +LR F R+ + + +E KIDG Sbjct: 61 VGGEPLKEFEPFTHVVPMLSLANAFSEGELRDFDRRVREAVG-----DVEYVVELKIDGL 115 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YEKG F + RGDG GE+V+ ++ I +IP L ++ + VRGEV++ + Sbjct: 116 SVELIYEKGIFTVGSTRGDGIVGENVTQNLKTIKSIPLRLKDDVS--LVVRGEVFMPRAS 173 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+E +G +ANPRNAA+G LR+L+P R L+ F+ L K K E Sbjct: 174 FEKLNEEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQKIEGRKFKTHIE 233 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ + GF + ++ + ++ E++++R LPYDIDG V KV++ ++ LG Sbjct: 234 TLEFLNEQGFKIIPIHKKCSNIDEVIKEIEEIRNLRDKLPYDIDGAVVKVNDLEKREILG 293 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + A+ PRW I+ K+ ++ T++LDI +Q+GRTG LTP A LEPV I G++++ ATLHNE Sbjct: 294 QTAKDPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVAISGSVVSRATLHNE 353 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYIK +DIR+GD V+V++AGE+IP+VV+++ ER + F P CP Sbjct: 354 DYIK-----------EKDIRIGDTVIVQKAGEIIPEVVEVVKEERTGQEREFVMPDRCPE 402 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + VR L A RCTG L C AQ L + HF S+DA +IEGLG ++ Sbjct: 403 CGALAVRLLGE------AIRRCTG-LNCPAQLLRGIIHFASKDAMDIEGLGPAIINQLLS 455 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I AD++ L+ + GD SV NL ++I + + L+R +F Sbjct: 456 K----GLIHNIADLYYLKYEDLI------QLERMGDKSVKNLLNAIEESKTRDLDRLLFG 505 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +G++ A+ +A+++ + N + + ++P +G +A++IV F+ Sbjct: 506 LGINLIGSKAAQVIAEHFKTMDNIMKA----------KFEDFTQLPDIGPKMARSIVSFF 555 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 +N+ +E L + VS+ E K V TG L+ R +A + + G Sbjct: 556 AEKQNVEIIEKLKNAGVNMKKLSKGKVSNIFEGKTFVLTGALESYTREEATRMIEERGGK 615 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 V+ +S+KTD ++VG +PGSKL+KAQ+LG+KI++E+QF +L+ N Sbjct: 616 VTNSVSKKTDYVLVGKDPGSKLKKAQELGIKIIDEKQFEEMLKGENI 662 >gi|167038089|ref|YP_001665667.1| NAD-dependent DNA ligase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116496|ref|YP_004186655.1| NAD-dependent DNA ligase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|254781439|sp|B0KBN6|DNLJ_THEP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166856923|gb|ABY95331.1| DNA ligase, NAD-dependent [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929587|gb|ADV80272.1| DNA ligase, NAD-dependent [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 662 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 241/707 (34%), Positives = 384/707 (54%), Gaps = 49/707 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + L ++I+YH+ YY +P I D EYD L R + +P+L P+ P + Sbjct: 4 KERIKELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPELK---TPDSPSQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE TH +P LSL ++ +LR F R+ + + +E KIDG Sbjct: 61 VGGEPLKEFEPFTHVVPMLSLANAFSEGELRDFDRRVREAVG-----DVEYVVELKIDGL 115 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YEKG F + RGDG GE+V+ ++ I +IP L ++ + VRGEV++ + Sbjct: 116 SVELIYEKGIFTVGSTRGDGIVGENVTQNLKTIKSIPLRLKDDVS--LVVRGEVFMPRAS 173 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+E +G +ANPRNAA+G LR+L+P R L+ F+ L K K E Sbjct: 174 FEKLNEEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQKIEGRKFKTHIE 233 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ + GF + ++ + ++ E++++R LPYDIDG V KV++ ++ LG Sbjct: 234 TLEFLNEQGFKIIPIHKKCSNIDEVIKEIEEIRNLRDKLPYDIDGAVVKVNDLEKREILG 293 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + A+ PRW I+ K+ ++ T++LDI +Q+GRTG LTP A LEPV I G++++ ATLHNE Sbjct: 294 QTAKDPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVAISGSVVSRATLHNE 353 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYIK +DIR+GD V+V++AGE+IP+VV+++ ER + F P CP Sbjct: 354 DYIK-----------EKDIRIGDTVIVQKAGEIIPEVVEVVKEERTGQEREFVMPDRCPE 402 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + VR L A RCTG L C AQ L + HF S+DA +IEGLG ++ Sbjct: 403 CGALAVRLLGE------AIRRCTG-LNCPAQLLRGIIHFASKDAMDIEGLGPAIINQLLS 455 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I AD++ L+ + GD SV NL ++I + + L+R +F Sbjct: 456 K----GLIHNIADLYYLKYEDLI------QLERMGDKSVKNLLNAIEESKTRDLDRLLFG 505 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +G++ A+ +A+++ + N + + ++P +G +A++IV F+ Sbjct: 506 LGINLIGSKAAQVIAEHFKTMDNIMKA----------KFEDFTQLPDIGPKMARSIVSFF 555 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 +N+ +E L ++ V++ E K V TG L R +A + + G Sbjct: 556 AEKQNVEIIEKLKNAGVNMKKIPKEKVNNIFEGKTFVLTGALGNYTREEATRIIEERGGK 615 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 V+ +S+KTD ++VG +PGSKL+KAQ+LG+KI++E+QF +L+ N Sbjct: 616 VTNSVSKKTDYVLVGKDPGSKLKKAQELGIKIIDEKQFEEMLKGENI 662 >gi|322418721|ref|YP_004197944.1| NAD-dependent DNA ligase [Geobacter sp. M18] gi|320125108|gb|ADW12668.1| DNA ligase, NAD-dependent [Geobacter sp. M18] Length = 668 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 257/710 (36%), Positives = 381/710 (53%), Gaps = 44/710 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + A + ++ L +EI H+ YY+ P I D+EYDAL R + FP+LA P Sbjct: 1 MEAQAAAERIAWLSKEIERHNRLYYEQDMPEITDAEYDALFRELQELEKKFPELAL---P 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG +V HS P LSLE ++ +D+ F R+ RF D I + E Sbjct: 58 DSPTGRVGGRPLAKFTQVRHSTPMLSLENAFSEQDMVDFDDRVKRFLGLAADAQISYICE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG + + Y G + RGDG GE+V+ ++ I +P + PE++ VRGE Sbjct: 118 PKMDGVAVELVYRDGLLAIGSTRGDGVVGEEVTQNLKTIKDVPLRLETREPPELVTVRGE 177 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249 VY+ F N E G P+ANPRNAA+G LR+L+ R L+ F + G+ + + Sbjct: 178 VYLPLAPFRKFNREREEAGEPPFANPRNAAAGSLRQLDSRITAKRPLSIFCYAPGELAGV 237 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q L+ + PVN R +++YY EM R LPY+IDG+V KVD F Sbjct: 238 EFTSQSHFLETIPKWRLPVNPLTRVVTGIQAMLAYYQEMMEKRDDLPYEIDGVVVKVDSF 297 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +Q++LGE++RSPRW + KF +QA+T + I +GRTG++TPVA L+PV++ G +++ Sbjct: 298 RMQRELGEKSRSPRWATAWKFPPRQATTVVEKIFHSVGRTGVITPVAFLKPVSVSGVMVS 357 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN + ++ +DIR GD V+V+RAG+VIP VV ++++R A Sbjct: 358 RATLHNWEELER-----------KDIREGDTVVVERAGDVIPAVVQALLDKRPEGAVKPE 406 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C VVR + + GLAC AQ LER+KHF SR A +IEGLG + Sbjct: 407 IPTSCPVCGGEVVRLPDEVAVR-------CVGLACPAQLLERVKHFASRRAMDIEGLGDK 459 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ + I ADI+ L+ G NL ++I + Sbjct: 460 FIEQLLSLK----LISDVADIYALKEADFMQF------ERMGKKLAENLLNAIEASKERD 509 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R IF+LG+RHVG A+ LA + S +N A+ L + VG +A Sbjct: 510 LSRLIFALGMRHVGEHTAKLLAGAFGSIENLAKASE----------EELTSIREVGPQVA 559 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +IV+F++N N+ +E L KE S EK + K VFTG L+K R A++ Sbjct: 560 ASIVDFFKNEENLRVIERL-KEAGVSPKVEEKRLGGRFTGKTFVFTGALEKFTRDGAKKM 618 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V Q GA + +S+KTD ++ G + GSKLEKA+QLGV+++ EE+FL L+Q Sbjct: 619 VEQEGAHAAGSVSKKTDYVVAGADAGSKLEKARQLGVRVLTEEEFLELMQ 668 >gi|166216288|sp|Q0HWD2|DNLJ_SHESR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 688 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 247/713 (34%), Positives = 391/713 (54%), Gaps = 51/713 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + + A+ + +L Q ++ H+ YY P I DSEYD L +R + +P + + Sbjct: 19 TPQNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAA---D 75 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GG ++TH P LSL+ ++ D F R+ + F EP Sbjct: 76 SPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVSDRVG-----EVSFCCEP 130 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEV 191 K+DG ++I Y G AA RGDG GED++ ++ I +IP L N PE++EVRGE Sbjct: 131 KLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVRGEA 190 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---KTS 247 ++ K F ALN+ K + NPRNAA+G LR+L+ +R L+F+ + LG TS Sbjct: 191 FMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVEPTS 250 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 AK YE LQ+++ G PV++ ++ + + +YY ++ + R+ LP++IDG+V KV+ Sbjct: 251 HELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVVMKVN 310 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + Q+ LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV +GG Sbjct: 311 DIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVT 370 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN D I+ L + VGD V+++RAG+VIP++V I+ R DA+ Sbjct: 371 VSNATLHNADEIERL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPEDAKA 419 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 +FP CP+C S V R A RC+GGL C AQ+ E +KHF SR A +I+G+G Sbjct: 420 IAFPQHCPVCGSLVERLEGE------AVTRCSGGLFCEAQRKEAIKHFASRKALDIDGMG 473 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ E ++ PAD+F L + + + G S TNL +I + Sbjct: 474 DKIVEQLIDKE----LVQSPADLFKLTA------SMMTMLDRMGMKSATNLAQAIEAAKT 523 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L RF+++LGIR VG A +LA ++ S + LI+V +G++ Sbjct: 524 TTLPRFLYALGIREVGEATAANLATHFGSLEALRVAT----------IEQLIQVEDIGEV 573 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKA 666 +AQ + F+ P N+ ++AL+ + ++ + V TGTL ++ R+ A Sbjct: 574 VAQHVAHFFAQPHNLEVIDALITAGVNWPTIAAPSADEQPLKGQTWVLTGTLNQLNRNDA 633 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK++ E++ L LL Sbjct: 634 KAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALLA 686 >gi|114047080|ref|YP_737630.1| DNA ligase, NAD-dependent [Shewanella sp. MR-7] gi|113888522|gb|ABI42573.1| DNA ligase, NAD-dependent [Shewanella sp. MR-7] Length = 690 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 247/713 (34%), Positives = 391/713 (54%), Gaps = 51/713 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + + A+ + +L Q ++ H+ YY P I DSEYD L +R + +P + + Sbjct: 21 TPQNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAA---D 77 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GG ++TH P LSL+ ++ D F R+ + F EP Sbjct: 78 SPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVSDRVG-----EVSFCCEP 132 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEV 191 K+DG ++I Y G AA RGDG GED++ ++ I +IP L N PE++EVRGE Sbjct: 133 KLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVRGEA 192 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---KTS 247 ++ K F ALN+ K + NPRNAA+G LR+L+ +R L+F+ + LG TS Sbjct: 193 FMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVEPTS 252 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 AK YE LQ+++ G PV++ ++ + + +YY ++ + R+ LP++IDG+V KV+ Sbjct: 253 HELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVVMKVN 312 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + Q+ LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV +GG Sbjct: 313 DIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVT 372 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN D I+ L + VGD V+++RAG+VIP++V I+ R DA+ Sbjct: 373 VSNATLHNADEIERL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPEDAKA 421 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 +FP CP+C S V R A RC+GGL C AQ+ E +KHF SR A +I+G+G Sbjct: 422 IAFPQHCPVCGSLVERLEGE------AVTRCSGGLFCEAQRKEAIKHFASRKALDIDGMG 475 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ E ++ PAD+F L + + + G S TNL +I + Sbjct: 476 DKIVEQLIDKE----LVQSPADLFKLTA------SMMTMLDRMGMKSATNLAQAIEAAKT 525 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L RF+++LGIR VG A +LA ++ S + LI+V +G++ Sbjct: 526 TTLPRFLYALGIREVGEATAANLATHFGSLEALRVAT----------IEQLIQVEDIGEV 575 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKA 666 +AQ + F+ P N+ ++AL+ + ++ + V TGTL ++ R+ A Sbjct: 576 VAQHVAHFFAQPHNLEVIDALITAGVNWPTIAAPSADEQPLKGQTWVLTGTLNQLNRNDA 635 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK++ E++ L LL Sbjct: 636 KAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALLA 688 >gi|295676829|ref|YP_003605353.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1002] gi|295436672|gb|ADG15842.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1002] Length = 687 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 254/713 (35%), Positives = 387/713 (54%), Gaps = 49/713 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L E+ + + YY +P + D+EYD L + + I PDL P+ P + Sbjct: 15 AERAAWLRAELEHANYAYYVLDQPDLPDAEYDKLFKELERIEAEHPDLIV---PDSPTQR 71 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS---IFFTLEPKI 134 +GGE V H P LSL + ED+ F RI + + E K Sbjct: 72 VGGEAASGFEPVVHDQPMLSLNNGFADEDIVAFDKRIGDALGNNASEPPVPVDYAAELKF 131 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193 DG I++RY G FV A+ RGDG +GE+V+ +R I +IP L P +++VRGEV + Sbjct: 132 DGLAISLRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLKLKGKRVPHVLDVRGEVLM 191 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIFA 251 K DF LN+ A G++ +ANPRNAA+G LR+L+ R L+FF +G+G Sbjct: 192 FKRDFERLNERQRAAGQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLDGIEMP 251 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 E+L + +G PVN G++ +++ + R LPYDIDG+VYKV+ Sbjct: 252 PTHSELLDWYKEMGLPVNGERAVVQGAKGLLGFFHAVGEKRDRLPYDIDGVVYKVNRRDE 311 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNA Sbjct: 312 QDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNA 371 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHNED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA+ F P Sbjct: 372 TLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSALLDRRPTDAREFVMP 420 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+C S + R + A RCTGGL C AQ+ + L HF R A +I+GLG++ + Sbjct: 421 TQCPVCGSAIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKII 474 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 D + +R PAD+F L + + F D S NL DS+ K ++ +L Sbjct: 475 DQLVEQN----LVRTPADLFNL------GFATLAELDRFADKSAQNLLDSLEKAKHTTLA 524 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RFI++LGIRHVG A+ LAK++ S +L+ V VG ++A++ Sbjct: 525 RFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SLEALLEVNDVGPVVAES 574 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 I +F+ N +E L + K + + +V TGTL + R A+E Sbjct: 575 IHQFFAEDHNRTVIEQLRAPGRVTWPEGPPAPKAPQGVLAGQTVVLTGTLPNLSREDAKE 634 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 + GA V+ +S+KT ++ G + GSKL KA++LG+ +++E+ LL+ + Sbjct: 635 MLEAAGAKVAGSVSKKTSYVVAGADAGSKLAKAEELGIPVLDEDGMRKLLEGH 687 >gi|332532506|ref|ZP_08408384.1| DNA ligase [Pseudoalteromonas haloplanktis ANT/505] gi|332038149|gb|EGI74596.1| DNA ligase [Pseudoalteromonas haloplanktis ANT/505] Length = 672 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 247/714 (34%), Positives = 384/714 (53%), Gaps = 46/714 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S ++++ L + H+ YY P I DSEYD L R A+ P+ + Sbjct: 1 MS-SSISEQINHLRTTLEQHNYNYYVLDTPSIPDSEYDRLLRELSALEMQHPEFLTA--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+GG +V H +P LSL+ ++ E+ F RI D + F E Sbjct: 57 DSPTQKVGGAALSKFEQVAHQVPMLSLDNAFSEEEFTAFNRRIKDRLMSTD--ELTFCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK+DG ++I Y G V AA RGDG +GE+++ ++ I +P L + P+ +EVRGEV Sbjct: 115 PKLDGLAVSIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPKELEVRGEV 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEI 249 ++ F LN E G K + NPRNAA+G LR+L+ R L F+ + G Sbjct: 175 FMDSAGFDKLNTEAQKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGS 234 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + Y+ L+K+ G P+ + + YY+++ + R L Y+IDG+V K+++ Sbjct: 235 IPEDHYQQLEKLTDWGLPLCPETKLVEGPKAALEYYSDILTRRGELKYEIDGVVIKINQK 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG AR+PRW I++KF ++ T+LLD++ Q+GRTG +TPVARLEPV +GG ++ Sbjct: 295 ALQERLGFVARAPRWAIAYKFPAQEEITQLLDVEFQVGRTGAITPVARLEPVFVGGVTVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I L ++VGD V+++RAG+VIP++ +++ R DA+ Sbjct: 355 NATLHNGDEIARL-----------GVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIE 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP CPIC S V + A RCTGGL C AQ+ + +KHF SR A +I+GLG + Sbjct: 404 FPVTCPICDSHVEKVEGE------AVARCTGGLVCPAQRKQAIKHFASRKALDIDGLGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D E I+ PAD+F L++ E++ G S NL ++ + + + Sbjct: 458 IVDQLVDRE----LIKTPADLFILKQ------GHFESLERMGPKSAKNLVTALEEAKGTT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L +F++SLGIR G A++LA ++L+ +N SL +V VG+I+A Sbjct: 508 LAKFLYSLGIREAGEATAQNLANHFLTLENIINA----------SIDSLTQVSDVGEIVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 + F+ N+ V AL+++ + V TGTL + R+ A+ Sbjct: 558 THVRGFFDEEHNLEVVNALIEQGVNWPALSAPSEEEQPLAGLTYVLTGTLNTLNRNDAKA 617 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + QLGA VS +S KTD ++ G+ GSKL KAQ LG+ I+ E++ + LLQ++N Sbjct: 618 RLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDILTEDELIELLQKHN 671 >gi|53723744|ref|YP_103200.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 23344] gi|67639492|ref|ZP_00438344.1| DNA ligase, NAD-dependent [Burkholderia mallei GB8 horse 4] gi|121600643|ref|YP_993378.1| DNA ligase, NAD-dependent [Burkholderia mallei SAVP1] gi|124385135|ref|YP_001029185.1| DNA ligase, NAD-dependent [Burkholderia mallei NCTC 10229] gi|126450807|ref|YP_001080885.1| DNA ligase, NAD-dependent [Burkholderia mallei NCTC 10247] gi|167004074|ref|ZP_02269848.1| DNA ligase, NAD-dependent [Burkholderia mallei PRL-20] gi|254178005|ref|ZP_04884660.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 10399] gi|254206491|ref|ZP_04912843.1| DNA ligase, NAD-dependent [Burkholderia mallei JHU] gi|254358100|ref|ZP_04974373.1| DNA ligase, NAD-dependent [Burkholderia mallei 2002721280] gi|81604820|sp|Q62JB9|DNLJ_BURMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215563|sp|A3MKU9|DNLJ_BURM7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215564|sp|A2SB66|DNLJ_BURM9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215565|sp|A1V575|DNLJ_BURMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|52427167|gb|AAU47760.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 23344] gi|121229453|gb|ABM51971.1| DNA ligase, NAD-dependent [Burkholderia mallei SAVP1] gi|124293155|gb|ABN02424.1| DNA ligase (NAD(+)) [Burkholderia mallei NCTC 10229] gi|126243677|gb|ABO06770.1| DNA ligase (NAD(+)) [Burkholderia mallei NCTC 10247] gi|147753934|gb|EDK60999.1| DNA ligase, NAD-dependent [Burkholderia mallei JHU] gi|148027227|gb|EDK85248.1| DNA ligase, NAD-dependent [Burkholderia mallei 2002721280] gi|160699044|gb|EDP89014.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 10399] gi|238520039|gb|EEP83503.1| DNA ligase, NAD-dependent [Burkholderia mallei GB8 horse 4] gi|243060513|gb|EES42699.1| DNA ligase, NAD-dependent [Burkholderia mallei PRL-20] Length = 691 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 264/733 (36%), Positives = 392/733 (53%), Gaps = 56/733 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + + P + Q K + L E+ + YY +P + D+EYD L I Sbjct: 1 MARSPVEPPAS----QPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEA 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 PDL P+ P ++GGE V H P LSL + ED+ F R+ K Sbjct: 57 EHPDLV---TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDK 113 Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 D + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR I IP Sbjct: 114 ATDLAGTVTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIP 173 Query: 175 RVLSLNIPEII-EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DI 232 L + +VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ Sbjct: 174 LTLKGKRIPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITA 233 Query: 233 TRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 +R L+FF +G+G +L LG PVN G++++++ + Sbjct: 234 SRPLSFFAYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGER 293 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R +LPYDIDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L ID+Q+GRTG Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLTAIDVQVGRTGA 353 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV +++ R DAQ F P+ CP C SR+ R + A RCTGGL C AQ+ + Sbjct: 403 EVVSAVLDRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQA 456 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L HF R A +I+GLG++ +D + +R PAD+F L + + + F Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVALDRFA 506 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S Sbjct: 507 EKSARNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAP------- 559 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIE 648 +L+ V VG I+A++I +F+ N +E L + + + Sbjct: 560 ---IDALLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLA 616 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ + Sbjct: 617 GKTVVLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPV 676 Query: 709 MNEEQFLFLLQQY 721 ++E LL+ + Sbjct: 677 LDEAGMHTLLEGH 689 >gi|307132386|ref|YP_003884402.1| DNA ligase, NAD(+)-dependent [Dickeya dadantii 3937] gi|306529915|gb|ADM99845.1| DNA ligase, NAD(+)-dependent [Dickeya dadantii 3937] Length = 683 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 256/726 (35%), Positives = 404/726 (55%), Gaps = 52/726 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M +++ P + +S + + +L ++ YH+ Y+ P I D+EYD L + Sbjct: 1 MLEKESKPADDISTVSVQ--IEALRAQLRYHEYKYHVEDAPEIPDAEYDKLMNALKTLEQ 58 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 A P+L P+ P ++G + + H +P LSL+ +++ F RI Sbjct: 59 AHPELV---TPDSPTQRVGATPLDAFDTIAHEVPMLSLDNVFDETSFLAFSKRINDRL-- 113 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 K+D + F E K+DG +++ YE G V AA RGDG +GE+++A IR + IP L + Sbjct: 114 KNDGELTFCCELKLDGLAVSLLYENGLLVRAATRGDGTTGENITANIRTVGAIPLRLRGD 173 Query: 181 I-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238 P+ +EVRGEV++ F ALN+E G K +ANPRNAA+G LR+L+P TR L F Sbjct: 174 NIPQRLEVRGEVFMKHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITATRPLTF 233 Query: 239 FVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 +G+G ++ L + R G PV++ +R ++ +Y +++ R TL + Sbjct: 234 LCYGVGLVEGGALPDTHWQRLMQFRDWGLPVSDRIRLCTGSDAVLDFYRQVEQERETLGF 293 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+V KV+E +LQ++LG AR+PRW ++ KF ++ T L D++ Q+GRTG +TPVAR Sbjct: 294 DIDGVVIKVNELTLQERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVAR 353 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 LEPV + G +++NATLHN D I+ L I++GDRV V+RAG+VIP++V ++ Sbjct: 354 LEPVAVAGVVVSNATLHNADEIERL-----------GIQIGDRVAVRRAGDVIPQIVSVV 402 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ++ER DA+P FP CP+C S + R A RCTGGL C AQ+ E LKHFVS Sbjct: 403 LSERPADARPVVFPEQCPVCGSELERVDGE------AVTRCTGGLFCGAQRKEALKHFVS 456 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R A ++EG+G + +D + E ++ PAD+F L S + + G S N Sbjct: 457 RRALDVEGMGDKIIDQLVEKE----YVKTPADLFRL------SAGILTGLDRMGPKSAQN 506 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L +++NK ++ + RF+++LGIR VG A SLA ++ + + D + Sbjct: 507 LVNALNKAKSTTFARFLYALGIRDVGEATAASLASHFGTLEALQSA----------DLEA 556 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHE----KNVSSEIENKKL 652 L +V VG ++A + F N ++ L+ E + + S K + Sbjct: 557 LQQVQDVGIVVATHVRNFLDEAHNQQVIQELISENIGIHWPAPVVVDVEASDSPFAGKTV 616 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TG+L + R +A++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E Sbjct: 617 VLTGSLTLLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLTKAQELGIEVIDEA 676 Query: 713 QFLFLL 718 + + LL Sbjct: 677 EMMRLL 682 >gi|323526494|ref|YP_004228647.1| NAD-dependent DNA ligase [Burkholderia sp. CCGE1001] gi|323383496|gb|ADX55587.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1001] Length = 688 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 261/711 (36%), Positives = 390/711 (54%), Gaps = 49/711 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L E+ + YY +P + D+EYD L + ++I PDL P+ P + Sbjct: 15 AERAAWLRAELERANYAYYVLDQPDLPDAEYDKLFKELESIEAQHPDLIV---PDSPTQR 71 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ---KKDDNSIFFTLEPKI 134 +GGE V H P LSL + ED+ F R+ K+ + + E K Sbjct: 72 VGGEAASGFEPVVHDQPMLSLNNGFADEDIVAFDKRVGDALGNNAKEPPVPVDYATELKF 131 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193 DG I++RY G FV AA RGDG +GE+V+ IR + +IP L P I++VRGEV + Sbjct: 132 DGLAISLRYVDGVFVQAATRGDGTTGENVTENIRTVRSIPLKLKGKRVPHILDVRGEVLM 191 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIFA 251 K DF LN+ A G K +ANPRNAA+G LR+L+P R L+FF +G+G Sbjct: 192 FKRDFERLNERQRAAGHKEFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMEMP 251 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 E+L + LG PVN+ G+++++ + R LPYDIDG+VYKV+ Sbjct: 252 ATHSELLDWYKELGLPVNSERAVVKGAEGLLAFFRAVGEKRDKLPYDIDGVVYKVNRRDE 311 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNA Sbjct: 312 QDALGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNA 371 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHNED ++ +DIR+GD V+V+RAG+VIP+VV ++ R DA+ F P Sbjct: 372 TLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSALLERRPDDAREFVMP 420 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+C S + R + A RCTGGL C AQ+ + L HF R A +I+GLG++ + Sbjct: 421 THCPVCGSSIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKII 474 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 D + +R PAD+F L + + + F D S NL DS+ K ++ +L Sbjct: 475 DQLVEQN----LVRTPADLFNL------GFSTLAELDRFADKSAQNLLDSLEKAKHTTLA 524 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RFI++LGIRHVG A+ LAK++ S + +L+ V VG ++A++ Sbjct: 525 RFIYALGIRHVGESTAKDLAKHFGSLDPIMEA----------SVEALLEVNDVGPVVAES 574 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 I +F+ N +E L + K + K +V TGTL + R +A+E Sbjct: 575 IHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTIVLTGTLPTLAREEAKE 634 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ LL+ Sbjct: 635 MLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMRKLLE 685 >gi|126453906|ref|YP_001066758.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106a] gi|134277579|ref|ZP_01764294.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 305] gi|167739178|ref|ZP_02411952.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 14] gi|167824768|ref|ZP_02456239.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 9] gi|167846299|ref|ZP_02471807.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei B7210] gi|167894881|ref|ZP_02482283.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 7894] gi|167903270|ref|ZP_02490475.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei NCTC 13177] gi|167919520|ref|ZP_02506611.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei BCC215] gi|217421846|ref|ZP_03453350.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 576] gi|226198948|ref|ZP_03794511.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pakistan 9] gi|237812814|ref|YP_002897265.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei MSHR346] gi|242317106|ref|ZP_04816122.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106b] gi|254179316|ref|ZP_04885915.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1655] gi|254198094|ref|ZP_04904516.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei S13] gi|166215566|sp|A3NWN7|DNLJ_BURP0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|126227548|gb|ABN91088.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106a] gi|134251229|gb|EBA51308.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 305] gi|169654835|gb|EDS87528.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei S13] gi|184209856|gb|EDU06899.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1655] gi|217395588|gb|EEC35606.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 576] gi|225929048|gb|EEH25072.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pakistan 9] gi|237506455|gb|ACQ98773.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei MSHR346] gi|242140345|gb|EES26747.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106b] Length = 691 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 264/733 (36%), Positives = 393/733 (53%), Gaps = 56/733 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + + P + Q K + L E+ + YY +P + D+EYD L I Sbjct: 1 MARSPVEPPAS----QPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEA 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 PDL P+ P ++GGE V H P LSL + ED+ F R+ K Sbjct: 57 EHPDLV---TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDK 113 Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 D + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR I IP Sbjct: 114 ATDLAGTVTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIP 173 Query: 175 RVLSLNIPEII-EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DI 232 L + +VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ Sbjct: 174 LTLKGKRIPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITA 233 Query: 233 TRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 +R L+FF +G+G +L LG PVN G++++++ + Sbjct: 234 SRPLSFFAYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGER 293 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R +LPYDIDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGA 353 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV +++ R DAQ F P+ CP C SR+ R + A RCTGGL C AQ+ + Sbjct: 403 EVVSAVLDRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQA 456 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L HF R A +I+GLG++ +D + +R PAD+F L + + + F Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVALDRFA 506 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S Sbjct: 507 EKSARNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAP------- 559 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIE 648 +L+ V VG I+A++I +F+ N +E L + + + Sbjct: 560 ---IDALLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLA 616 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ + Sbjct: 617 GKTVVLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPV 676 Query: 709 MNEEQFLFLLQQY 721 ++E LL+ + Sbjct: 677 LDEAGMHTLLEGH 689 >gi|260769097|ref|ZP_05878031.1| DNA ligase [Vibrio furnissii CIP 102972] gi|260617127|gb|EEX42312.1| DNA ligase [Vibrio furnissii CIP 102972] Length = 669 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 248/710 (34%), Positives = 386/710 (54%), Gaps = 47/710 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + L+ L+ + YH YY P I D+EYD L R + P+L P+ Sbjct: 1 MQNVEQRLTELKDTLHYHAIRYYVEDDPTIPDAEYDRLMRELLDLEAQHPELV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG +VTH IP LSL+ ++ ++L F R+ F EPK Sbjct: 58 PSQRVGGAPLAGFEQVTHEIPMLSLDNAFDDDELNSFHRRMGDRVLAAKTAK--FCCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG +++ Y G V AA RGDG +GE+++ +R I +IP L P IEVRGEV+ Sbjct: 116 LDGLAVSLLYVDGVLVQAATRGDGTTGENITENVRTIKSIPLRLQGTGWPTRIEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIF- 250 + K F +N E + G K + NPRNAA+G LR+L+ R L F+ + +G Sbjct: 176 MPKAGFEKMNAEALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVIQGGTL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 YE +++ G P++ ++ + + +YY ++ + RS LPY+IDG+V KVD+ + Sbjct: 236 VDSHYERFLQLKGWGLPMSPETKRVESLDEVKAYYQDIMTRRSELPYEIDGVVIKVDDIA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++N Sbjct: 296 LQEQLGFVARAPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +++GD V+++RAG+VIP++V ++ R A+ F Sbjct: 356 ATLHNADEIERL-----------GVKIGDTVVIRRAGDVIPQIVSVVNELRPETAREILF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS V R A RC+GGL C AQ+ E LKHFVSR A +++GLG + Sbjct: 405 PAQCPVCQSDVERVEGE------AVARCSGGLVCQAQRKEALKHFVSRKALDVDGLGDKV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + PAD+F L+ ++ + G S N+ +++N + +L Sbjct: 459 IEQLVDKE----MVSTPADLFRLRA------GELTILERMGPKSAQNIVNALNTAKATTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF++SLGIR VG A +LA ++L+ + LI VP VG I+A Sbjct: 509 PRFLYSLGIREVGEATAMNLAHHFLTLDAIREAT----------IEQLIEVPDVGTIVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 + F+ RN VE L+ +I + + K +V TGTL ++ R A+ Sbjct: 559 HVHAFFTQERNQKVVEELIALGIHWQAIAPKTDDEPQPLAGKVVVLTGTLSQLSRSDAKA 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+ TDI+ G+ GSKL KAQ+LG++I +E+ + ++ Sbjct: 619 ALQALGAKVTGSVSKNTDILFAGEAAGSKLAKAQELGIEIRDEQDLIAMI 668 >gi|163760776|ref|ZP_02167856.1| DNA ligase, NAD-dependent [Hoeflea phototrophica DFL-43] gi|162282098|gb|EDQ32389.1| DNA ligase, NAD-dependent [Hoeflea phototrophica DFL-43] Length = 739 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 296/720 (41%), Positives = 429/720 (59%), Gaps = 23/720 (3%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 + PIEALS +A+ EL L EI+ HD+ Y++ PI+ D+EYDA KRR AI F Sbjct: 38 TQDTKPIEALSEAEAKAELDRLAAEIARHDEAYHRKDAPIVSDAEYDAFKRRNLAIEERF 97 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P L + + P K+G + K+TH + LSLE ++ ED R F+ R+ RF Sbjct: 98 PHLRLA---DSPSLKVGAPVAEGFGKITHKVAMLSLENAFSDEDARDFVNRVKRFLNLTP 154 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI- 181 + + T EPKIDG +++RYE G V AA RGDG +GE+V+A R I IP L+ Sbjct: 155 FDELALTAEPKIDGLSLSLRYENGTLVSAATRGDGATGENVTANARTISDIPHQLAGEDV 214 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240 PE+IEVRGEVY++K DF+ALN A G++ Y NPRN A+G LR+L+P R L FF Sbjct: 215 PEVIEVRGEVYMTKADFMALNARQAAAGKQTYVNPRNTAAGSLRQLDPKITAERPLRFFA 274 Query: 241 HGLGKTSEIFAKG-QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ Q EM+ GF VN + + + ++++Y +++ R+ LPYDI Sbjct: 275 YAWGEVLPSLPYPTQSEMVAAFARWGFAVNPLMARVTSAEALIAHYRLIEAERAGLPYDI 334 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD+ LQ++LG +RSPRW I+HKF ++AST L IDIQ+GRTG LTPVARLE Sbjct: 335 DGVVYKVDDLGLQRRLGFVSRSPRWAIAHKFPAEKASTLLTAIDIQVGRTGALTPVARLE 394 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG ++TNATLHN + I+ L +R+GD V ++RAG+VIP+V+ ++ + Sbjct: 395 PVTVGGVVVTNATLHNAEEIERL-----------GVRIGDTVQIQRAGDVIPQVLGVVSS 443 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 DA F+FPS CP V G RC+G AC Q+ E LKHFVSR Sbjct: 444 P--EDAVAFAFPSICPCDLKTPVIREETAGGVEGVVRRCSGEFACPFQRKEHLKHFVSRK 501 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ-TSTTKIENILGFGDVSVTNL 538 AF+I+GLG++Q++FF++ D I PADIFTL+ R + +++N G+GD S L Sbjct: 502 AFDIDGLGEKQIEFFYE--DKTLPINQPADIFTLKMRDEANGLQRLKNRDGYGDTSAQKL 559 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +D+I +R ++LER IFSLGIRHVG + A++LA+ Y + I ++ + Sbjct: 560 FDAIEAKREVALERLIFSLGIRHVGEQTAKTLARAYGDWTTLHAAALAIADGDSAAVEEM 619 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 + +G + +AI F+ NI V+ L+ +++ S + +VFTG+L Sbjct: 620 DALDDIGPAVVEAIGRFFGEDHNIAMVDNLVSQLTVLDAEKPA-QDSPVAGLTVVFTGSL 678 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +K+ R +A+ +LGA V+ +S+KTDI++ G GSKL KAQ LGV+ M+E+ + L+ Sbjct: 679 EKMTRDEAKAMAERLGAKVAGSVSKKTDILVAGPGAGSKLTKAQGLGVRTMDEDGWFELV 738 >gi|53719773|ref|YP_108759.1| DNA ligase [Burkholderia pseudomallei K96243] gi|167816389|ref|ZP_02448069.1| DNA ligase [Burkholderia pseudomallei 91] gi|81379503|sp|Q63T07|DNLJ_BURPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|52210187|emb|CAH36166.1| DNA ligase [Burkholderia pseudomallei K96243] Length = 691 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 264/733 (36%), Positives = 393/733 (53%), Gaps = 56/733 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + + P + Q K + L E+ + YY +P + D+EYD L I Sbjct: 1 MARSPVEPPAS----QPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEA 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 PDL P+ P ++GGE V H P LSL + ED+ F R+ K Sbjct: 57 EHPDLV---TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDK 113 Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 D + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR I IP Sbjct: 114 ATDLAGTVTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIP 173 Query: 175 RVLSLNIPEII-EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DI 232 L + +VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ Sbjct: 174 LTLKGKRIPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITA 233 Query: 233 TRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 +R L+FF +G+G +L LG PVN G++++++ + Sbjct: 234 SRPLSFFAYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGER 293 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R +LPYDIDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGA 353 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV +++ R DAQ F P+ CP C SR+ R + A RCTGGL C AQ+ + Sbjct: 403 EVVSAVLDRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQA 456 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L HF R A +I+GLG++ +D + +R PAD+F L + + + F Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVGLDRFA 506 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S Sbjct: 507 EKSARNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAP------- 559 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIE 648 +L+ V VG I+A++I +F+ N +E L + + + Sbjct: 560 ---IDALLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLA 616 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ + Sbjct: 617 GKTVVLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPV 676 Query: 709 MNEEQFLFLLQQY 721 ++E LL+ + Sbjct: 677 LDEAGMHTLLEGH 689 >gi|114768813|ref|ZP_01446439.1| DNA ligase [alpha proteobacterium HTCC2255] gi|114549730|gb|EAU52611.1| DNA ligase [alpha proteobacterium HTCC2255] Length = 711 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 279/718 (38%), Positives = 433/718 (60%), Gaps = 16/718 (2%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E L QA KEL L + + + YY PI+ D+EYD LK+R I FP+L Sbjct: 6 PVEKLDKMQAEKELIRLNEILDRANSDYYSNDAPILSDAEYDTLKKRNLDIESRFPNLKL 65 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 N +KIG + + + K+ H++ LSL ++ +D+ F R+ + +D I Sbjct: 66 K---NSVSDKIGSKPSSTFKKIKHTVKMLSLANGFDEQDIIDFDQRVKKILGF-EDRVIS 121 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + EPKIDG ++++Y GK A RGDG GE+V+ I IP+ + I+E+ Sbjct: 122 YVAEPKIDGLSLSLKYIDGKLFQATTRGDGEVGENVTENAITIQNIPKYIHNAPS-ILEI 180 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY+S NDF LN + + K ++NPRNAA+G LR+L+ +R L F+ + G+ Sbjct: 181 RGEVYMSLNDFNELNIKQKNIDAKIFSNPRNAAAGSLRQLDSKVTASRPLKFYAYAWGEV 240 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 S + QY + ++R GF N+ ++ ++S+Y+ + + R+ L YDIDG+VYKV Sbjct: 241 STPISDTQYNAIDRLRKFGFSTNDLTKKCYGPKELISHYDNISNKRADLGYDIDGVVYKV 300 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D S Q +LG R+ +PRW I+HKF + A T L I+IQ+GRTG L+PVARL+PVN+GG Sbjct: 301 DNLSYQDRLGFRSTTPRWAIAHKFPAEIAQTWLESIEIQVGRTGALSPVARLKPVNVGGV 360 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++NATLHNEDYIKG D+ G ++RGG DIR GD V V RAG+VIPK+ D+ V++R ++ Sbjct: 361 IVSNATLHNEDYIKGKDSKGNIIRGGNDIREGDWVYVYRAGDVIPKISDVDVSKRISTSK 420 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P++FPSFCP C S + + + RC GG+ C AQ ++ L HFVSR AF+I+GL Sbjct: 421 PYTFPSFCPECSSP------SERIEGDSVARCIGGITCPAQAVQGLAHFVSRGAFDIDGL 474 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q++ F++ ++ PADIF L+ R + ++EN G+G S NL+++I +R Sbjct: 475 GNKQIEQFYQ----LGWVKEPADIFKLKLRYENGIKRLENRDGWGQKSANNLFNAIESKR 530 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 I L + +++LGIRHVG A L+K+Y S+ N + +N + W L+ + VG+ Sbjct: 531 TIPLNKMLYALGIRHVGETSATLLSKHYKSFDNLKKSMNEAKSLEGSSWSDLMSIDGVGE 590 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I+A+A+V+ + NP ++ L++E+ S +E +VFTG+L+ + R +A Sbjct: 591 ILAKAVVQIFNNPAQRQIIDNLVEELVIENEIENIVSGSPLEGMVVVFTGSLELMTRSEA 650 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 + + GA VS +S+KTD+++ G GSK +KA +LGVK+++E ++L L+ N + Sbjct: 651 KISAEKFGAKVSGSVSKKTDLVVSGPGAGSKEKKAIELGVKVLSESEWLKLINLNNLS 708 >gi|223936891|ref|ZP_03628800.1| DNA ligase, NAD-dependent [bacterium Ellin514] gi|223894460|gb|EEF60912.1| DNA ligase, NAD-dependent [bacterium Ellin514] Length = 680 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 244/713 (34%), Positives = 382/713 (53%), Gaps = 45/713 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ +A+ + L +EI HD+ YY +KP I D YD L + FPDL S Sbjct: 1 MTHNEAKTRHTQLVEEIRGHDNAYYVEAKPTISDQAYDRLYHELLDLEKKFPDLITS--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++ GE V H P +SL+ ++ +D+R F+ R+ R + ++ + LE Sbjct: 58 DSPSQRVSGEPLKEFKPVHHLSPMMSLDNTYSQQDVRDFVGRVQRLL---PNETLEWILE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI---PEIIEVR 188 PK+DG I ++YEKG FV A RGDG +G+DV++ ++ I +I L + P+++E+R Sbjct: 115 PKVDGVAINLKYEKGVFVCGATRGDGTTGDDVTSNLKTIRSIAGKLKASGRKLPDVVEIR 174 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG-KT 246 GEVY+ K F +N E +A G +P+ANPRN+A+G L++L+P R L+ V+GLG Sbjct: 175 GEVYLPKAAFTKINAERVAAGEEPFANPRNSAAGSLKQLDPRIVAKRPLDVIVYGLGVFE 234 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 K E+L ++ G + + ++ NE+ +R Y+ DG V K+ Sbjct: 235 GAERPKEHDEVLAWLKSAGCKTPEKTWKCCSADELIDAINELDQLRRKFTYETDGAVIKL 294 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + F+L++++G +++PRW I++K+A +QA T+L I IQ+GRTG LTPVA LEPV + G+ Sbjct: 295 NSFALRERIGFTSKAPRWAIAYKYAAEQAETKLKAITIQVGRTGALTPVAELEPVFLAGS 354 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 I+ ATLHNED ++ +DIRVGD V +++AGEVIP VV +++ +R Sbjct: 355 TISRATLHNEDELRR-----------KDIRVGDTVTIEKAGEVIPAVVGVVLTKRTGKEV 403 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F FP+ CP C S+V R + G RC AC AQ R++H+ +R A +IEG Sbjct: 404 QFQFPTHCPECGSKVARTEGTENGAAGVVWRCLNA-ACPAQIRGRIEHWCARGAMDIEGG 462 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G+ + +R +D+++L Q + G+ S N D + + Sbjct: 463 GEALVSQLVTK----GLVREVSDLYSLTLDQVAG------LERMGEKSAQNFLDGVQASK 512 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + R +F LGI HVGA +A+ L + + + + L V +G+ Sbjct: 513 TRDMWRLLFGLGILHVGAGVAKRLGRRFTTLDDIFAASQ----------EQLTEVEDIGE 562 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRH 664 +IA +IV+++Q P+N +E L K K V TGTL ++R Sbjct: 563 VIAHSIVQWHQEPKNRELIELLRKAGLNFNSELYKPAAALGHFAGKTFVLTGTLPTLKRE 622 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +A + LG VS +S+KTD I+ G++ GSKLEKAQ+LGVKI++E FL L Sbjct: 623 EAAAKIEALGGKVSGSVSKKTDYIVAGEDAGSKLEKAQKLGVKIIDEAAFLKL 675 >gi|126441747|ref|YP_001059474.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 668] gi|166215567|sp|A3NAV3|DNLJ_BURP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|126221240|gb|ABN84746.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 668] Length = 691 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 264/733 (36%), Positives = 393/733 (53%), Gaps = 56/733 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + + P + Q K + L E+ + YY +P + D+EYD L I Sbjct: 1 MARSPVEPPAS----QPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEA 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 PDL P+ P ++GGE V H P LSL + ED+ F R+ K Sbjct: 57 EHPDLV---TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDK 113 Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 D + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR I IP Sbjct: 114 ATDLAGTVTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIP 173 Query: 175 RVLSLNIPEII-EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DI 232 L + +VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ Sbjct: 174 LTLKGKRLPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITA 233 Query: 233 TRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 +R L+FF +G+G +L LG PVN G++++++ + Sbjct: 234 SRPLSFFAYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGER 293 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R +LPYDIDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGA 353 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV +++ R DAQ F P+ CP C SR+ R + A RCTGGL C AQ+ + Sbjct: 403 EVVSAVLDRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQA 456 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L HF R A +I+GLG++ +D + +R PAD+F L + + + F Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVALDRFA 506 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S Sbjct: 507 EKSARNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAP------- 559 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIE 648 +L+ V VG I+A++I +F+ N +E L + + + Sbjct: 560 ---IDALLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLA 616 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ + Sbjct: 617 GKTVVLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPV 676 Query: 709 MNEEQFLFLLQQY 721 ++E LL+ + Sbjct: 677 LDEAGMHTLLEGH 689 >gi|52425821|ref|YP_088958.1| NAD-dependent DNA ligase LigA [Mannheimia succiniciproducens MBEL55E] gi|81386743|sp|Q65RN7|DNLJ_MANSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|52307873|gb|AAU38373.1| Lig protein [Mannheimia succiniciproducens MBEL55E] Length = 675 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 254/715 (35%), Positives = 391/715 (54%), Gaps = 45/715 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I +++ L + YH+ Y+ P I D+EYD L + A+ P+L + Sbjct: 1 MTIMDINQQIKQLRDTLRYHEYQYHVLDDPKIPDAEYDRLFHQLKALEQQHPELITA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G + ++TH +P LSL+ ++ E+ F+ RI + F E Sbjct: 58 DSPTQRVGAKPLAGFAQITHELPMLSLDNAFSDEEFNAFVKRIQDRLIVLP-QPLTFCCE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190 PK+DG ++I Y G AA RGDG +GED++ IR I IP L + N P +EVRGE Sbjct: 117 PKLDGLAVSIFYVNGVLTQAATRGDGTTGEDITLNIRTIRNIPLQLLTDNPPARLEVRGE 176 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS-E 248 V++ F LN+ + G K +ANPRNAA+G LR+L+P +R F + +G Sbjct: 177 VFMPHEGFNRLNERALEHGEKTFANPRNAAAGSLRQLDPKITSRRPLVFNAYSVGIAEGV 236 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 YE LQ ++ +G PVN+ V+ + ++ +Y M+ R TL YDIDG V K+++ Sbjct: 237 ELPATHYERLQWLKSVGIPVNSEVQLCDGSEKVLEFYRSMQQKRPTLGYDIDGTVLKIND 296 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 LQ++LG +++PRW I++KF ++ TRL D++ Q+GRTG +TPVA+L PV + G + Sbjct: 297 IGLQRELGFISKAPRWAIAYKFPAQEELTRLNDVEFQVGRTGAITPVAKLAPVFVAGVTV 356 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I L DI +GD V+++RAG+VIP+++ ++ R +AQ Sbjct: 357 SNATLHNGDEIARL-----------DIAIGDTVVIRRAGDVIPQIIGVLHERRPANAQAI 405 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CP+C S++VR A RCTGGL C AQ+ E LKHFVSR A +I+G+G Sbjct: 406 VFPTQCPVCGSKIVRIEGE------AVARCTGGLFCDAQRKEALKHFVSRRAMDIDGVGA 459 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E IR PAD+F L + + G+ S N DS+ K +N Sbjct: 460 KLIEQLVDKE----LIRTPADLFKL------DLITLMRLERMGEKSAQNALDSLEKAKNT 509 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFIF+LGIR VG A +LA ++ + L V VG+++ Sbjct: 510 TLARFIFALGIREVGEATALNLANHFKNLDALQAA----------SPEQLQEVADVGEVV 559 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 A I F++ NI AV L+ + ++ + + K +V TGTL ++ R++ + Sbjct: 560 ANRIYVFWREQHNIDAVNDLIAQGIHWETVETKEAGENPFKGKTVVLTGTLTQMGRNETK 619 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + + QLGA + +S KT +I GDN GSKL KAQ+LGV +M+E +FL ++ Y Sbjct: 620 DLLQQLGAKAAGSVSAKTHFVIAGDNAGSKLTKAQELGVAVMSEAEFLAIVNAYK 674 >gi|289165264|ref|YP_003455402.1| DNA ligase [Legionella longbeachae NSW150] gi|288858437|emb|CBJ12315.1| DNA ligase [Legionella longbeachae NSW150] Length = 671 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 254/712 (35%), Positives = 391/712 (54%), Gaps = 46/712 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + I++ +++ + L+ +I +D YY +P++ D EYD R + P+L + Sbjct: 1 MIIDEIKEQAARLKDKIRQYDYHYYVLDEPLVPDVEYDRCFRALQNLEAQHPELLTA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + VTH P LSL +++ E+L+ F+ R+ + + FT E Sbjct: 58 DSPTQRVGGTPADAFAPVTHRQPMLSLSNVFSEEELQAFVKRVTEKLDEPA-QQLVFTCE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII-EVRGE 190 PK+DG + I YE G VYAA RGDG +GE+++A I+ I IP VL N P E+RGE Sbjct: 117 PKLDGLAVNITYENGVLVYAATRGDGTTGENITANIKTIAAIPLVLRSNKPPRFIEIRGE 176 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSE 248 VY+ K+ F N + +G K +ANPRNAA+G LR+LNP R L + +G+G Sbjct: 177 VYMPKSGFEQYNKKAKELGEKTFANPRNAAAGSLRQLNPAVTANRPLAIYCYGIGACEDY 236 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 +E LQ ++ LGF V++ ++ G + YY M + R LP++IDG+VYKVD Sbjct: 237 RLPNTHWEQLQLLKELGFKVSSESKREVGIKGCLDYYCNMLARRDQLPFEIDGVVYKVDS 296 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ+QLG +R+PR+ +HKF + T +L +D Q+GRTG LTPVARL PVN+ G + Sbjct: 297 IALQQQLGFISRAPRFACAHKFPATEEITEILAVDFQVGRTGALTPVARLAPVNVAGVTV 356 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I +DIR+GD+V+++RAG+VIP+VV +++ +R D + Sbjct: 357 SNATLHNMDEITR-----------KDIRIGDKVIIRRAGDVIPEVVSVVLEQRPADTKEI 405 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP+C S VVR+ A RC GGL C AQ + HF SR A +IEGLG Sbjct: 406 CLPLKCPVCDSDVVREEGE------AVARCIGGLFCKAQLKRMMWHFASRKAMHIEGLGS 459 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 ++ +R D++ L + + N+ G+ S NL ++ + Sbjct: 460 VLIEQLVDE----GIVRHLPDLYRL------DVSTLANLPRMGEKSAKNLLQALEHSKKT 509 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF+++LGIR +G AR LA+++ + + L+ + +G + Sbjct: 510 TLSRFLYALGIREIGEASARVLAEHFGDIEAISNATEA----------DLMSLEDMGPVG 559 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A IV F+ N+ ++ LL+ P I + ++N + K +V TGTL + R +A Sbjct: 560 AANIVHFFAQTHNLQVIQHLLELGIHWPKIEKKQQNKEHPLFGKTVVLTGTLNTLSREEA 619 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + LGA VS +S KTD +I G G+KL+KA LG+ I++EEQFL +L Sbjct: 620 KAKLLILGAKVSGSVSAKTDYVIAGIEAGTKLDKANNLGISILDEEQFLHML 671 >gi|297544111|ref|YP_003676413.1| NAD-dependent DNA ligase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841886|gb|ADH60402.1| DNA ligase, NAD-dependent [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 662 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 238/707 (33%), Positives = 384/707 (54%), Gaps = 49/707 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + L ++I+YH+ YY +P I D EYD L R + +P+L P+ P + Sbjct: 4 KERIKELREKINYHNYKYYVLDQPEISDYEYDMLMRELIELEEKYPELK---TPDSPSQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE TH +P LSL ++ +L+ F R+ + + +E KIDG Sbjct: 61 VGGEPLKEFEPFTHIVPMLSLANAFSEGELKDFDRRVREAVG-----DVEYVVELKIDGL 115 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G F + RGDG +GE+V+ ++ I +IP L N+ + VRGEV++ + Sbjct: 116 SVELIYENGIFTVGSTRGDGITGENVTPNLKTIKSIPLRLKDNVS--LVVRGEVFMPRAS 173 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN E +G +ANPRNAA+G LR+L+P R L+ F+ L + K E Sbjct: 174 FERLNTEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQRVEGRKFKTHVE 233 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ ++ GF V ++ + ++ E+++++ LPYDIDG V KV++ ++ LG Sbjct: 234 TLEFLKEQGFKVIPIHKKCSNIDEVIREIEEIRNLKDKLPYDIDGAVVKVNDLEKREILG 293 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + A+ PRW I+ K+ ++ T++LDI +Q+GRTG LTP A LEPV I G++++ ATLHNE Sbjct: 294 QTAKEPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVPISGSVVSRATLHNE 353 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYIK +DIR+GD V++++AGE+IP+VV++I ER + F P CP+ Sbjct: 354 DYIK-----------EKDIRIGDTVIIQKAGEIIPEVVEVIKEERTGQEREFVMPDRCPV 402 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + VR A RCT C AQ L + HF S+DA +IEGLG ++ Sbjct: 403 CGALAVRLPGE------AVRRCTSV-NCPAQLLRGIIHFASKDAMDIEGLGPAIINQLLS 455 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + I AD++ L+ + GD SV NL ++I + + L+R +F Sbjct: 456 N----GLIHNIADLYYLKYEDLI------QLERMGDKSVKNLLNAIEESKTRDLDRLLFG 505 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +G++ A+ +A+++ + + + + ++P VG +A++IV F+ Sbjct: 506 LGINLIGSKAAQVIAEHFKTIDDIMKA----------KFEDFTKLPDVGPKMARSIVSFF 555 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 +N+ +E L K ++ VSS E K V TG L R +A + + G Sbjct: 556 AEKQNVETIEKLKKAGVNMKKLSKEKVSSIFEGKTFVLTGALGNYTREEATRIIEERGGK 615 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 V+ +S+KTD ++VG +PGSKL+KAQ+LG++I++E+QF +L+ N Sbjct: 616 VTNSVSKKTDYVLVGKDPGSKLKKAQELGIEIIDEKQFEEMLKGENI 662 >gi|270159993|ref|ZP_06188649.1| DNA ligase [Legionella longbeachae D-4968] gi|269988332|gb|EEZ94587.1| DNA ligase [Legionella longbeachae D-4968] Length = 671 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 254/712 (35%), Positives = 391/712 (54%), Gaps = 46/712 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + I++ +++ + L+ +I +D YY +P++ D EYD R + P+L + Sbjct: 1 MIIDEIKEQAARLKDKIRQYDYHYYVLDEPLVPDVEYDRCFRALQNLEAQHPELLTA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + VTH P LSL +++ E+L+ F+ R+ + + FT E Sbjct: 58 DSPTQRVGGTPADAFAPVTHRQPMLSLSNVFSEEELQAFVKRVTEKLDEPA-QQLVFTCE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII-EVRGE 190 PK+DG + I YE G VYAA RGDG +GE+++A I+ I IP VL N P E+RGE Sbjct: 117 PKLDGLAVNITYENGVLVYAATRGDGTTGENITANIKTIAAIPLVLRSNKPPRFIEIRGE 176 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSE 248 VY+ K+ F N + +G K +ANPRNAA+G LR+LNP R L + +G+G Sbjct: 177 VYMPKSGFEQYNKKAKELGEKTFANPRNAAAGSLRQLNPAVTANRPLAIYCYGIGACEDY 236 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 +E LQ ++ LGF V++ ++ G + YY M + R LP++IDG+VYKVD Sbjct: 237 RLPNTHWEQLQLLKELGFKVSSESKREVGIKGCLXYYCNMLARRDQLPFEIDGVVYKVDS 296 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ+QLG +R+PR+ +HKF + T +L +D Q+GRTG LTPVARL PVN+ G + Sbjct: 297 IALQQQLGFISRAPRFACAHKFPATEEITEILAVDFQVGRTGALTPVARLAPVNVAGVTV 356 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I +DIR+GD+V+++RAG+VIP+VV +++ +R D + Sbjct: 357 SNATLHNMDEITR-----------KDIRIGDKVIIRRAGDVIPEVVSVVLEQRPADTKEI 405 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP+C S VVR+ A RC GGL C AQ + HF SR A +IEGLG Sbjct: 406 CLPLKCPVCDSDVVREEGE------AVARCIGGLFCKAQLKRMMWHFASRKAMHIEGLGS 459 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 ++ +R D++ L + + N+ G+ S NL ++ + Sbjct: 460 VLIEQLVDE----GIVRHLPDLYRL------DVSTLANLPRMGEKSAKNLLQALEHSKKT 509 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF+++LGIR +G AR LA+++ + + L+ + +G + Sbjct: 510 TLSRFLYALGIREIGEASARVLAEHFGDIEAISNATEA----------DLMSLEDMGPVG 559 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A IV F+ N+ ++ LL+ P I + ++N + K +V TGTL + R +A Sbjct: 560 AANIVHFFAQTHNLQVIQHLLELGIHWPKIEKKQQNKEHPLFGKTVVLTGTLNTLSREEA 619 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + LGA VS +S KTD +I G G+KL+KA LG+ I++EEQFL +L Sbjct: 620 KAKLLILGAKVSGSVSAKTDYVIAGIEAGTKLDKANNLGISILDEEQFLHML 671 >gi|238919178|ref|YP_002932692.1| NAD-dependent DNA ligase LigA [Edwardsiella ictaluri 93-146] gi|238868746|gb|ACR68457.1| DNA ligase, NAD-dependent, putative [Edwardsiella ictaluri 93-146] Length = 672 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 264/711 (37%), Positives = 397/711 (55%), Gaps = 51/711 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++L L + +H+ YY P I D+EYD L + + P L + P Sbjct: 2 IEQQLEQLRDALRHHEYQYYVLDDPQITDAEYDRLMMQLKQLEAVHPALVTV---DSPSQ 58 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + +V H +P LSL+ +++ E + F R++ K D + F EPK+DG Sbjct: 59 RVGGAPLAAFGQVHHEVPMLSLDNVFDEESYQAFDKRLHERL--KSDEPLTFCCEPKLDG 116 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 +++ YE+G V AA RGDG +GED+++ ++ I IP L IP IEVRGEV++ + Sbjct: 117 LAVSLLYEQGVLVRAATRGDGTTGEDITSNVKTIRAIPLRLQGEAIPARIEVRGEVFMPQ 176 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIFAKG 253 + F A+N+E G K +ANPRNAA+G LR+L+P R L F+ +G G+ Sbjct: 177 DGFEAMNEEARRRGAKIFANPRNAAAGSLRQLDPRITAQRPLTFYCYGTGQLEGGALPDS 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Y+ LQ+ + G PV+ VR +++YY ++ R TL +DIDG+V KVD+ ++Q+ Sbjct: 237 HYQCLQRFKSWGLPVSERVRLCCGSAEVLAYYRQIGQARPTLGFDIDGVVIKVDDIAIQE 296 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG AR+PRW + KF ++ TRL ++ Q+GRTG +TPVARLEPV + G ++NATL Sbjct: 297 RLGFVARAPRWATAFKFPAQEQMTRLNGVEFQVGRTGAITPVARLEPVLVAGVTVSNATL 356 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L D+R+GD V+V+RAG+VIP+VV ++ R DA FP+ Sbjct: 357 HNADEIERL-----------DLRIGDTVIVRRAGDVIPQVVGVVEAMRPRDAHEIGFPTH 405 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S V R A RC+GGL C+AQ+ E LKHFVSR A ++EG+G + ++ Sbjct: 406 CPVCGSEVERTEGE------AVARCSGGLICAAQRKESLKHFVSRRAMDVEGMGDKVIEQ 459 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E + PAD++ L S K+ + G S T L ++++ R +L RF Sbjct: 460 LVDKE----YVATPADLYRL------SAGKLTGLERMGPKSATKLIAALDRSRETTLARF 509 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F+LGIR VG A +LA ++ S Q D SL RVP VG+++A IV Sbjct: 510 LFALGIREVGEATAANLASHFGSLQALRAA----------DLESLKRVPEVGEVVASHIV 559 Query: 614 EFYQNPRNICAVEALLK-EVSP-----SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F N ++ L+ EV + + V S K +V TG+L + R +A+ Sbjct: 560 HFLSEEHNRQVIDELISDEVGIRWPEGAPAQSAPAVDSPFAGKTVVLTGSLSVLSRDEAK 619 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +T LGA VS +S+KTD++I GD GSKL KA LG+++++E Q L +L Sbjct: 620 DRLTALGARVSGSVSKKTDLVIAGDAAGSKLAKANILGIEVIDEAQMLRML 670 >gi|269836970|ref|YP_003319198.1| DNA ligase, NAD-dependent [Sphaerobacter thermophilus DSM 20745] gi|269786233|gb|ACZ38376.1| DNA ligase, NAD-dependent [Sphaerobacter thermophilus DSM 20745] Length = 680 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 252/716 (35%), Positives = 385/716 (53%), Gaps = 52/716 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + ++ ++ L + I ++ YY +P + D+EYDAL + A P+L P Sbjct: 1 MDDVDVQERIAELRKLIERYNYEYYVLDQPSVSDAEYDALMNELRELEAAHPELI---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G + + V H IP LSL ++ ++LR++ R+YR ++D I F E Sbjct: 58 DSPTQRVGAPPSSAFGTVRHEIPMLSLANAFSEQELRQWAERVYRLAGRRD---IEFVTE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEV 187 PKIDG+ ++I Y G + A RGDG GEDV+A IR + +P L ++PE++EV Sbjct: 115 PKIDGSAVSILYRNGVYERGATRGDGIQGEDVTANIRTVRNVPLRLHDVDGVHVPEVLEV 174 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGE+Y+ K+DF ALN G +ANPRNAA+G LR+L+P +R L F+ +G Sbjct: 175 RGEIYMRKSDFEALNRRRGEAGEILFANPRNAAAGSLRQLDPNVTASRPLRFYAWDVGII 234 Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 L +R LG P T + + S+R L ++IDG+V K Sbjct: 235 EGGQHNGTHTANLDLLRTLGIPTAPDYHVWQTIDEVWAECERWLSLRDELDFEIDGVVVK 294 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ LQ +LG +R PRW I++KF Q +T L DI++ +GRTG L PVA L+PV IGG Sbjct: 295 VNDEDLQAELGTVSREPRWAIAYKFPAIQKTTILRDIEVNVGRTGSLNPVAILDPVEIGG 354 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ ATLHNED I+ L D+ +GDRV+V+R+G+VIPK+V ++V+ R D Sbjct: 355 VVVRRATLHNEDEIRRL-----------DLLIGDRVVVQRSGDVIPKIVAVVVSARDGDE 403 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 +PF+ P CP+C + VR R +C A+ E ++HFVSR A +IEG Sbjct: 404 RPFTMPDHCPVCGAAAVRLEGE-------VMRYCVNASCPARLREAVRHFVSRGAMDIEG 456 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 G + + F I ADI+ L +I + GFGD + NL SI Sbjct: 457 FGSRLAEQFVD----LGLIHSVADIYEL------DWERIRQLEGFGDKRIANLQASIEAS 506 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + L R + +LGIRHVG AR LA+++ S A L +P G Sbjct: 507 KERPLSRLLHALGIRHVGERNARLLAQHFNSMDRIAAA----------SIEELQGIPGFG 556 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQR 663 ++A+A+ +F++ P+N+ ++ L V + K +V TG L+ + R Sbjct: 557 RVVAEAVYDFFREPQNLALIQRLRAHGLRMTEADGDTAPVDGRLAGKTVVLTGRLESMTR 616 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +AQE + ++GA V++ +SRKTD +IVG +PGSK ++A++LGV+I++E+ FL LL Sbjct: 617 EQAQEALRRMGATVTSSVSRKTDFVIVGQDPGSKADRARELGVQILDEQAFLALLN 672 >gi|269960659|ref|ZP_06175031.1| DNA ligase [Vibrio harveyi 1DA3] gi|269834736|gb|EEZ88823.1| DNA ligase [Vibrio harveyi 1DA3] Length = 670 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 254/713 (35%), Positives = 390/713 (54%), Gaps = 48/713 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E + L L++ + YH YY P I D+EYD + R I P+L Sbjct: 1 MS-ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPELVTV--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG+ +VTH +P LSL+ ++ +L F R + E Sbjct: 57 DSPSQRVGGQPLSEFSQVTHEVPMLSLDNAFDDAELDGFHKRAQDRV--VGHTIKQYCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190 PK+DG +++ YE G V AA RGDG +GE+++ +R I IP L + P +EVRGE Sbjct: 115 PKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTISAIPLKLQGKDWPTRLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249 V++ K F LN+ G K + NPRNAA+G LR+L+ +R L+F+ + +G Sbjct: 175 VFMPKAGFDKLNENARKKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVEGA 234 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 A YE +++ G P+ ++ ++ + +YY ++ + R L Y+IDG+V KVD+ Sbjct: 235 TLANSHYERFLQIKSWGLPMCPETKRVDSLEEVKAYYQDILTRREALAYEIDGVVIKVDD 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 ++Q++LG AR+PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEPV +GG + Sbjct: 295 IAIQERLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I+ L + VGD+V+++RAG+VIP+VV +I R A+ Sbjct: 355 SNATLHNADEIERLQ-----------VMVGDQVVIRRAGDVIPQVVSVIKERRPETAREI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++GLG Sbjct: 404 LFPDACPVCGSHVERIEGE------AVTRCTGGLVCQAQRKEALKHFVSRKALDVDGLGD 457 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E + PAD+F L S + + G S TN+ +++ K + Sbjct: 458 KVIEQLVDRE----MVETPADLFKL------SAGVLTVLERMGPKSATNVVNALEKSKLT 507 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF++SLGIR VG A +LA+++ + Q LI V +G I+ Sbjct: 508 TLPRFLYSLGIREVGEATAANLAQHFKNLDAIQQATE----------EQLIEVQDIGVIV 557 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A+ I F+ +N V LL + P I ++ V +E K +V TGTL ++ R +A Sbjct: 558 AKHITTFFDEEKNQAVVRDLLGQGINWPDIAAPQEGVELPLEGKTVVLTGTLSQLGRSEA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + LGA V+ +S+KTDI+ G+N GSKL KAQ+LG++I E+ L L+ Sbjct: 618 KEALQNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIQTEQDLLNLMN 670 >gi|27363688|ref|NP_759216.1| NAD-dependent DNA ligase LigA [Vibrio vulnificus CMCP6] gi|81449211|sp|Q8DFK5|DNLJ_VIBVU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|27359804|gb|AAO08743.1| DNA ligase, NAD-dependent [Vibrio vulnificus CMCP6] Length = 669 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 254/712 (35%), Positives = 395/712 (55%), Gaps = 48/712 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E ++ L L+Q++ YH YY P I D+EYD + R AI P+ Sbjct: 1 MS-ESKQQYLEELKQQLHYHAVRYYVEDNPEIPDAEYDRMMRELMAIEAEHPEWI---SV 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG S +VTH IP LSL+ ++ E+L F+ R ++ F E Sbjct: 57 DSPSQRVGGVALDSFRQVTHEIPMLSLDNAFSDEELESFLKRAQDRMPSAHIDA--FCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 PK+DG +++ YE G V AA RGDG +GE+++ +R I ++P L P IEVRGE Sbjct: 115 PKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIASVPLKLQGEGWPSRIEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V++ K F LND G K + NPRNAA+G LR+L+ TR L F+ + +G I Sbjct: 175 VFMPKAGFEKLNDIARKKGEKVFVNPRNAAAGSLRQLDSKITATRPLAFYAYSVGVVEGI 234 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + Y+ +++ G P+ + N + ++Y ++ + R LPY+IDG+V K+D+ Sbjct: 235 SLSSSHYQRFLQLKQWGLPMCPETKLVNGLESVKAFYADILNRRDALPYEIDGVVIKIDD 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +Q++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG + Sbjct: 295 IVIQEKLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I+ L + VGD V+++RAG+VIP++V ++ + R D + Sbjct: 355 SNATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVKDRRKGDEKNI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CP+C S V R A RC+GGL C AQ+ E LKHFVSR A +++GLG Sbjct: 404 IFPTACPVCHSHVERIEGE------AVTRCSGGLVCQAQRKEALKHFVSRKALDVDGLGD 457 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E + PAD+FTL S + + G S N+ +++N + Sbjct: 458 KVIEQLVDKE----MVETPADLFTL------SAGVLTVLERMGPKSAQNIVNALNVAKET 507 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF++SLGIR VG A +LA+++ + + + LI VP +G+++ Sbjct: 508 TLARFLYSLGIREVGEATAANLARHFKTLEAIQTATH----------EQLIEVPDIGEVV 557 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKA 666 A+ I F+ +N V+AL+++ E + + K +V TGTL ++ R A Sbjct: 558 ARHITAFFAEEKNQRVVQALIEQGIVWPAVEELGSEIPQPLAGKVVVLTGTLTQLSRGDA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + +LGA V+ +S+KTDI+ G+ GSKL KAQ+LGV+I E+ L LL Sbjct: 618 KAALERLGAKVTGSVSKKTDIVFAGEAAGSKLTKAQELGVEIQTEQDLLALL 669 >gi|76810783|ref|YP_333980.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710b] gi|167720173|ref|ZP_02403409.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei DM98] gi|167911510|ref|ZP_02498601.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 112] gi|254189298|ref|ZP_04895809.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pasteur 52237] gi|254259109|ref|ZP_04950163.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710a] gi|254297202|ref|ZP_04964655.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 406e] gi|123771899|sp|Q3JR23|DNLJ_BURP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|76580236|gb|ABA49711.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710b] gi|157807762|gb|EDO84932.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 406e] gi|157936977|gb|EDO92647.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pasteur 52237] gi|254217798|gb|EET07182.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710a] Length = 691 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 264/733 (36%), Positives = 393/733 (53%), Gaps = 56/733 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + + P + Q K + L E+ + YY +P + D+EYD L I Sbjct: 1 MARSPVEPPAS----QPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEA 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 PDL P+ P ++GGE V H P LSL + ED+ F R+ K Sbjct: 57 EHPDLV---TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDK 113 Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 D + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR I IP Sbjct: 114 ATDLAGTVTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIP 173 Query: 175 RVLSLNIPEII-EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DI 232 L + +VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ Sbjct: 174 LTLKGKRIPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITA 233 Query: 233 TRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 +R L+FF +G+G +L LG PVN G++++++ + Sbjct: 234 SRPLSFFAYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGER 293 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R +LPYDIDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGA 353 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV +++ R DAQ F P+ CP C SR+ R + A RCTGGL C AQ+ + Sbjct: 403 EVVSAVLDRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQA 456 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L HF R A +I+GLG++ +D + +R PAD+F L + + + F Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVALDRFA 506 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S Sbjct: 507 EKSARNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMHAP------- 559 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIE 648 +L+ V VG I+A++I +F+ N +E L + + + Sbjct: 560 ---IDALLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLA 616 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ + Sbjct: 617 GKTVVLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPV 676 Query: 709 MNEEQFLFLLQQY 721 ++E LL+ + Sbjct: 677 LDEAGMHTLLEGH 689 >gi|307250556|ref|ZP_07532498.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857372|gb|EFM89486.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 682 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 251/708 (35%), Positives = 401/708 (56%), Gaps = 46/708 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +L +L Q++ ++ Y+ P++ D+EYD L + P+ + + P ++ Sbjct: 16 AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + +VTH IP LSL+ ++ E+L F+ R+ + + ++ F EPK+DG Sbjct: 73 GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKND 197 ++I Y G AA RGDG +GED+++ IR + IP N P +EVRGEV++ + Sbjct: 132 VSILYVDGVLSQAATRGDGTTGEDITSNIRTVRNIPLKLNMDNPPARLEVRGEVFMPQKG 191 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGKTSEIFAKGQ 254 F LN+ + G K +ANPRNAA+G LR+L+P + N + G+ ++ + Sbjct: 192 FETLNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPVTH 251 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y ++++ R TL YDIDG V KV++ LQ+Q Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V +++ R +A+ FP+ C Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E + PAD+F L+ T + + G+ S N +SI K +N +L RF+ Sbjct: 475 MERE----LVHTPADLFKLE------HTTLMRLERMGEKSAQNALNSIEKAKNTTLARFL 524 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ + + L V VG+++A IV Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574 Query: 615 FYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+Q P N+ VE L+ + + + ++ K +V TGTL ++ R +A+ + Sbjct: 575 FWQEPHNVAVVEDLISQGVHWQNVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 G VS +S KTD +I G+ GSKL KAQ+LGVK++ E++F+ L + Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLTKAQELGVKVLTEQEFIALTGEN 682 >gi|330817444|ref|YP_004361149.1| DNA ligase [Burkholderia gladioli BSR3] gi|327369837|gb|AEA61193.1| DNA ligase [Burkholderia gladioli BSR3] Length = 691 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 263/730 (36%), Positives = 393/730 (53%), Gaps = 55/730 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + + P + Q + + L E+ + YY +P + D+EYD L R I Sbjct: 1 MARSPVEPPAS----QPSERAAWLRNELERANHAYYVLDQPDLPDAEYDRLFRELQQIEA 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 PDL P+ P ++GGE V H P LSL ++ ED+ F R+ K Sbjct: 57 EHPDLI---TPDSPTQRVGGEAATGFTPVVHDAPMLSLNNGFSDEDIAAFDKRVADALDK 113 Query: 121 KDDN-------SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTI 173 + + + E K DG I++RYE G+FV AA RGDG +GEDV+ +R I +I Sbjct: 114 APADLAGTAIDPVEYACELKFDGLAISLRYEHGRFVQAATRGDGTTGEDVTENVRTIRSI 173 Query: 174 PRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-D 231 P L N P +++VRGEV + K DF LN ++ +ANPRNAA+G LR+L+ Sbjct: 174 PLTLKGKNPPALLDVRGEVLMYKRDFARLNQRQREAEQREFANPRNAAAGSLRQLDSKIT 233 Query: 232 ITRYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290 R L+FF +G+G +L G PVN G++++++++ Sbjct: 234 AQRPLSFFAYGIGVLEGATMPDTHSGLLDWYAGFGLPVNRERAVVKGAEGLLAFFHKVGE 293 Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350 R LPYDIDG+VYKV+ Q++LG +R+PR+ ++HKF ++A TRLL I++Q+GRTG Sbjct: 294 QREALPYDIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTRLLAIEVQVGRTG 353 Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410 +TPVARLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VI Sbjct: 354 AITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVI 402 Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 P+VV +++ R DA F P+ CP+C SR+ R A RCTGGL C AQ+ + Sbjct: 403 PEVVSALLDRRPADAAEFVMPTECPVCGSRIERLPEE------AIARCTGGLFCPAQRKQ 456 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530 L HF R A +I+GLG++ +D + +R PAD+F L + + F Sbjct: 457 ALWHFAQRRALDIDGLGEKIIDQLVEQN----LVRTPADLFHL------GFATLAALDRF 506 Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 D S NL DS+ K R+ +L RFI++LGIRHVG A+ LAK++ S Q Sbjct: 507 ADKSAQNLLDSLEKARHTTLGRFIYALGIRHVGESTAKDLAKHFGSLQPIMDATT----- 561 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIEN 649 L+ V VG ++A+++ +F+ N + L ++V G + Sbjct: 562 -----EQLLEVNDVGPVVAESLHQFFAEEHNRTVIAQLREKVDWPEGPPAPREPQGVLAG 616 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 K +V TGTL + R +A+ + GA V+ +S+KTD ++ G GSKL KA++LG+ ++ Sbjct: 617 KTVVLTGTLPTLGRDEAKALLEAAGAKVTGSVSKKTDYVVAGAEAGSKLAKAEELGIPVL 676 Query: 710 NEEQFLFLLQ 719 +E+ LL+ Sbjct: 677 DEDGMHLLLK 686 >gi|323499974|ref|ZP_08104932.1| NAD-dependent DNA ligase LigA [Vibrio sinaloensis DSM 21326] gi|323314991|gb|EGA68044.1| NAD-dependent DNA ligase LigA [Vibrio sinaloensis DSM 21326] Length = 669 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 257/712 (36%), Positives = 395/712 (55%), Gaps = 48/712 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E +++L+ L + + YH YY P I D+EYD L R + PDL Sbjct: 1 MSKE-IQEKLNQLRETLHYHGVKYYVEDSPEIPDAEYDRLMRELMELESQHPDLM---SL 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG V H IP LSL+ ++ +L F R+ + F E Sbjct: 57 DSPSQRVGGAALDGFGSVNHEIPMLSLDNAFDDAELESFNKRMADRIPSAKFDV--FCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 PK+DG +++ YE G V AA RGDG +GE+++ +R I IP L PE IEVRGE Sbjct: 115 PKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLKLQGQGWPERIEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249 V++ K F LN++ + G K + NPRNAA+G LR+L+ TR L+F+ + +G Sbjct: 175 VFMPKAGFDKLNEQALKKGEKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVQGA 234 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + YE +++ G P+ ++ + + +YY ++ R LPY+IDG+V KVD+ Sbjct: 235 TLSSSHYERFLQLKGWGLPMCPETKRVSGLDEVKAYYQDILQRREALPYEIDGVVIKVDD 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ+QLG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG + Sbjct: 295 IALQEQLGFVARAPRWAIAYKFPAQEELTTLNDVEFQVGRTGAITPVAKLEPVFVGGVTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I+ L + +GD V+++RAG+VIP++V ++V+ R A+ Sbjct: 355 SNATLHNADEIERLS-----------VMIGDTVVIRRAGDVIPQIVSVVVDRRPDSAREI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CP+CQS+V R A RC+GGL C AQ+ E LKHFVSR A +++GLG+ Sbjct: 404 VFPALCPVCQSQVERIEGE------AVARCSGGLVCQAQRKEALKHFVSRKALDVDGLGE 457 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E + PAD+F L S I + G S N+ D++N+ + Sbjct: 458 KVIEQLVDRE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVDALNQSKQT 507 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF++SLGIR VG A +LA+++ S Q + + LI V +G+I+ Sbjct: 508 TLPRFLYSLGIREVGEATAANLAQHFKSLQAVTKATH----------EELIAVSDIGEIV 557 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A I F+ N + LL++ P I +++ + K +V TG+L ++ R A Sbjct: 558 ASHITAFFAQESNQQVIGQLLEQGINWPEIEERDESTPQPLAGKTVVLTGSLSQLSRSDA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + LGA V+ +S+KTDI+ G+N GSKL KAQ LGV+I E+ + L+ Sbjct: 618 KAALQDLGAKVTGSVSKKTDILFAGENAGSKLAKAQDLGVEIRTEQDLIDLI 669 >gi|37679166|ref|NP_933775.1| NAD-dependent DNA ligase LigA [Vibrio vulnificus YJ016] gi|81758078|sp|Q7MMT5|DNLJ_VIBVY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|37197908|dbj|BAC93746.1| NAD-dependent DNA ligase [Vibrio vulnificus YJ016] Length = 669 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 255/712 (35%), Positives = 394/712 (55%), Gaps = 48/712 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E ++ L L+Q++ YH YY P I D+EYD + R AI P+ Sbjct: 1 MS-ESKQQYLEELKQQLHYHAVRYYVEDNPEIPDAEYDRMMRELMAIEAEHPEWI---SV 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG S +VTH IP LSL+ ++ E+L F+ R ++ F E Sbjct: 57 DSPSQRVGGVALDSFRQVTHEIPMLSLDNAFSDEELESFLKRAQDRMPSAHIDA--FCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 PK+DG +++ YE G V AA RGDG +GE+++ +R I ++P L P IEVRGE Sbjct: 115 PKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIASVPLKLQGEGWPSRIEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V++ K F LND G K + NPRNAA+G LR+L+ TR L F+ + +G I Sbjct: 175 VFMPKVGFEKLNDIARKKGEKVFVNPRNAAAGSLRQLDSKITATRPLAFYAYSVGVVEGI 234 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + Y+ +++ G P+ + N + ++Y ++ + R LPY+IDG+V K+D+ Sbjct: 235 SLSSSHYQRFLQLKQWGLPMCPETKLVNGLESVKAFYADILNRRDALPYEIDGVVIKIDD 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +Q++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG + Sbjct: 295 IVIQEKLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I+ L + VGD V+++RAG+VIP++V ++ R D P Sbjct: 355 SNATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVKERRKGDENPI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CP+C S V R A RC+GGL C AQ+ E LKHFVSR A +++GLG Sbjct: 404 VFPTSCPVCHSHVERIEGE------AVTRCSGGLVCQAQRKEALKHFVSRKALDVDGLGD 457 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E + PAD+FTL S + + G S N+ +++N + Sbjct: 458 KVIEQLVDKE----MVETPADLFTL------SAGVLTVLERMGPKSAQNIVNALNVAKET 507 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF++SLGIR VG A +LA+++ + + + LI VP +G+++ Sbjct: 508 TLARFLYSLGIREVGEATAANLARHFKTLEAIQTATH----------EQLIEVPDIGEVV 557 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKA 666 A+ I F+ +N V+AL+++ E + + K +V TGTL ++ R A Sbjct: 558 ARHITAFFAEEKNQRVVQALIEQGIVWPPVEELGSEIPQPLAGKVVVLTGTLTQLSRGDA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + +LGA V+ +S+KTDI+ G+ GSKL KAQ+LGV+I E+ L LL Sbjct: 618 KAALERLGAKVTGSVSKKTDIVFAGEAAGSKLTKAQELGVEIQTEQDLLALL 669 >gi|307261779|ref|ZP_07543445.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868597|gb|EFN00408.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 676 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 252/708 (35%), Positives = 401/708 (56%), Gaps = 46/708 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +L +L Q++ ++ Y+ P++ D+EYD L + P+ + + P ++ Sbjct: 10 AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 66 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + +VTH IP LSL+ ++ E+L F+ R+ + + ++ F EPK+DG Sbjct: 67 GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 125 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKND 197 ++I Y G AA RGDG +GED+++ IR I IP N P +EVRGEV++ + Sbjct: 126 VSILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKG 185 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGKTSEIFAKGQ 254 F LN+ + G K +ANPRNAA+G LR+L+P + N + G+ ++ + Sbjct: 186 FETLNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPVTH 245 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y ++++ R TL YDIDG V KV++ LQ+Q Sbjct: 246 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 305 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 306 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 365 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V +++ R +A+ FP+ C Sbjct: 366 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 414 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 415 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 468 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E + PAD+F L+ T + + G+ S N +SI K +N +L RF+ Sbjct: 469 MERE----LVHTPADLFKLE------HTTLMRLERMGEKSAQNALNSIEKAKNTTLARFL 518 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ + + L V VG+++A IV Sbjct: 519 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 568 Query: 615 FYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+Q P N+ VE L+ + + + ++ K +V TGTL ++ R +A+ + Sbjct: 569 FWQEPHNVAVVEDLISQGVHWQNVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 628 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 G VS +S KTD +I G+ GSKL KAQ+LGVK++ E++F+ L + Sbjct: 629 GCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIALTGEN 676 >gi|138893932|ref|YP_001124385.1| NAD-dependent DNA ligase LigA [Geobacillus thermodenitrificans NG80-2] gi|166215760|sp|A4IJY6|DNLJ_GEOTN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|134265445|gb|ABO65640.1| DNA ligase [Geobacillus thermodenitrificans NG80-2] Length = 670 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 258/717 (35%), Positives = 399/717 (55%), Gaps = 54/717 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + +QA++ + L + ++ + YY +P + D+EYD L + AI +P+L S Sbjct: 1 MDRQQAKRRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEKQYPELKTS--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +IGG + KVTH +P +SL +N DLR F R+ ++ + E Sbjct: 58 DSPTQRIGGPPLEAFRKVTHRVPMMSLANAFNEGDLRDFDRRVR-----QEVGEAAYVCE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG +GED++ ++ I ++P L+ + +E RGE Sbjct: 113 LKIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLNEPVS--LEARGEA 170 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 ++ K FL LN+E A G + +ANPRNAA+G LR+L+P +R L+ FV+GL E+ Sbjct: 171 FMPKASFLRLNEERQARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELG 230 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + L ++ LGF VN R+ T ++++ NE K R LPY+IDG+V KVD F+ Sbjct: 231 IESHSAALSYLQSLGFKVNPERRRCATIDEVIAFVNEWKEKRPQLPYEIDGIVIKVDSFA 290 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG A+SPRW I++KF ++ T L+ I++ +GRTG +TP A LEPV + G + Sbjct: 291 QQRQLGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGAVTPTAILEPVRVAGTTVQR 350 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED+I+ +DIR+GD V++K+AG++IP+VV ++V+ R D PF+ Sbjct: 351 ATLHNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDEVPFTM 399 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ ERL HF SR A NIEGLG++ Sbjct: 400 PTHCPECESELVRLDGE------VALRCLNPK-CPAQLRERLIHFASRSAMNIEGLGEKV 452 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A + AD++ L + Q + G+ S NL +I + SL Sbjct: 453 VTQLFN----AGLVHDVADLYQLTKEQLVG------LERMGEKSAANLLAAIEASKQNSL 502 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIR+VGA+ A+ LA+++ + + L+ VP +G+ +A Sbjct: 503 ERLLFGLGIRYVGAKAAQLLAEHFETMERLEAATK----------DELMAVPEIGEKMAD 552 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 +I ++ P + + L + E SS + K +V TG L + R++ Sbjct: 553 SITTYFSQPEAVELLNELRTYGVNMAYKGRKRTAETPASSVLAGKTVVLTGKLASMSRNE 612 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A+E + +LG V+ +SR TDI+I G++ GSKL+KAQQLG++I +E +FL + + Sbjct: 613 AKEQIERLGGRVTGSVSRSTDIVIAGEDAGSKLDKAQQLGIEIWDETRFLQEISREE 669 >gi|223041748|ref|ZP_03611941.1| DNA ligase [Actinobacillus minor 202] gi|223017432|gb|EEF15850.1| DNA ligase [Actinobacillus minor 202] Length = 680 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 258/706 (36%), Positives = 400/706 (56%), Gaps = 46/706 (6%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E+ +L ++ ++ Y+ P++ D+EYD L + P+L P+ P ++G Sbjct: 15 EIETLRNKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELI---TPDSPTQRVG 71 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + +VTH +P LSL+ ++ EDL F+ R+ + S+ F EPK+DG + Sbjct: 72 AKPLDGFSQVTHELPMLSLDNAFSDEDLDGFLRRMESYISVAPS-SLAFCCEPKLDGLAV 130 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKNDF 198 +I Y G AA RGDG +GED++A IR I IP + N P +EVRGEV++ + F Sbjct: 131 SILYVNGVLTQAATRGDGTTGEDITANIRTIRNIPLKLKTDNPPLRLEVRGEVFMPQKGF 190 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF---FVHGLGKTSEIFAKGQY 255 ALN + + G K +ANPRNAA+G LR+L+P + + G+ + + + Sbjct: 191 EALNQKALEKGEKTFANPRNAAAGSLRQLDPKITAQRPLMLNAYSIGIYDSDDELPSTHF 250 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ ++ LG PVNN +R ++ +Y ++++ R TL YDIDG V KV++ +LQ+QL Sbjct: 251 ERLQWLKSLGIPVNNEIRLEKGRENLLKFYADIQTKRPTLGYDIDGTVLKVNDIALQEQL 310 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLHN Sbjct: 311 GFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHN 370 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+ L I +GD V+++RAG+VIP+++ I+ R +A+ +FP+ CP Sbjct: 371 GDEIERL-----------GIAIGDTVIIRRAGDVIPQIIGIVAERRPKNAKKITFPTACP 419 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 IC S VVR A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 420 ICGSAVVRVEGE------AVARCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLIEQLM 473 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + E + PAD+F L + + + G+ S N +SI K +N +L RF+F Sbjct: 474 ERE----LVHTPADLFKLDQ------VTLMRLERMGEKSAQNALNSIEKAKNTTLPRFLF 523 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG A +LA ++ S + L V VG+++A IV F Sbjct: 524 ALGIRDVGEATALNLANHFGSLDAIRAAT----------FEQLQEVQDVGEVVANRIVRF 573 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 +Q P N+ VE L+++ + + + +++K +V TGTL + R +A+ + LG Sbjct: 574 WQEPHNVEVVEDLIQQGVVWQNIEQVEIADNPLKDKNVVLTGTLSVLTRDQAKALLQGLG 633 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 VS +S KTD +I G+ GSKL KAQ+LGVK+++E+ FL ++ Q Sbjct: 634 CKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLSEQDFLAIVGQ 679 >gi|219870289|ref|YP_002474664.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis SH0165] gi|254781340|sp|B8F314|DNLJ_HAEPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219690493|gb|ACL31716.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis SH0165] Length = 675 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 255/705 (36%), Positives = 404/705 (57%), Gaps = 46/705 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +L L +++ ++ Y+ P++ D+EYD L + P+L S + P Sbjct: 4 SIETQLEHLREKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELITS---DSPT 60 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G + ++TH IP LSL+ ++ +DL F+ RI + N I F EPK+D Sbjct: 61 QRVGAKPLDGFAQITHEIPMLSLDNAFSDDDLTGFLRRIEDRIA-INSNQIEFCCEPKLD 119 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYIS 194 G ++I Y G AA RGDG +GED++A IR I IP + N P +EVRGEV++ Sbjct: 120 GLAVSILYVDGVLTQAATRGDGTTGEDITANIRTIRNIPLKLKTNNPPHRLEVRGEVFMP 179 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF---FVHGLGKTSEIFA 251 + F LN++ +A G K +ANPRNAA+G LR+L+P ++ + G+ ++ + Sbjct: 180 QQGFEQLNEKALAKGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYNIGVYESDDELP 239 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 ++ LQ ++ LG PVN + A + ++Y ++++ RS+L YDIDG V KV+E +L Sbjct: 240 TTHFDRLQWLKTLGIPVNAEITLATGSQALTAFYQKIQAKRSSLGYDIDGTVLKVNEITL 299 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+QLG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NA Sbjct: 300 QEQLGFISKAPRWAIAYKFPAQEEMTILNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNA 359 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I+ L I +GD V+++RAG+VIP++V ++ R +A+ +FP Sbjct: 360 TLHNGDEIERL-----------GIAIGDTVIIRRAGDVIPQIVGVVAERRPDNAKKIAFP 408 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+C S VVR A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ + Sbjct: 409 TACPVCNSAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLI 462 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + + E I PAD+F L T + + G+ S N SI K +N +L Sbjct: 463 EQLMERE----LIHTPADLFKL------DHTTLMRLDRMGEKSANNALQSIEKAKNTTLA 512 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RF+F+LGIR VG A++LA ++ + Q D +L +V VG+++A Sbjct: 513 RFLFALGIRDVGESTAQNLANHFGTLDAIRQA----------DLDTLKQVQDVGEVVANR 562 Query: 612 IVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 + +F+Q P N+ VE L+ + ++ + +++K +V TGTL ++ R +A+ + Sbjct: 563 LFQFWQEPHNVEVVEDLIAQGVTWQDVVPQEIADNPLKDKTVVLTGTLTQLTRDQAKALL 622 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 QLG VS +S KTD +I G+ GSKL KAQ+LGVKI++E++ + Sbjct: 623 QQLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKILSEDELI 667 >gi|121604718|ref|YP_982047.1| DNA ligase [Polaromonas naphthalenivorans CJ2] gi|166216226|sp|A1VN98|DNLJ_POLNA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|120593687|gb|ABM37126.1| DNA ligase, NAD-dependent [Polaromonas naphthalenivorans CJ2] Length = 707 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 257/724 (35%), Positives = 393/724 (54%), Gaps = 56/724 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + +++L E+ H YY +P I D+EYD L + A+ A P+L P Sbjct: 15 MPPASVIERIAALRAELDLHAHRYYVLDEPSIPDAEYDRLFKELQALEAAHPELL---TP 71 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKD-DNSIFF 128 + P ++GG+ V H IP LS+ + E R F TR+ + K+ D + + Sbjct: 72 DSPTQRVGGKPLGQFASVRHRIPMLSIRTETDTEATGARNFDTRVRKELGLKESDPPVEY 131 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 E K DG +++RYE G V AA RGDG GEDV+ IR I IP L + P ++EVR Sbjct: 132 VAELKFDGLAMSLRYENGVLVQAATRGDGEVGEDVTQNIRTIRQIPLRLPADAPPVMEVR 191 Query: 189 GEVYISKNDFLALNDEMIAV------GRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 GEVY+ +++F ALN+ G K + NPRNAA+G +R+L+P R L+FF + Sbjct: 192 GEVYMRRDEFEALNERQREKIAKGAKGEKTFVNPRNAAAGGVRQLDPAFAAERRLSFFAY 251 Query: 242 GLGKTSEIF-----AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296 G+G+ + + +E+LQ ++ FPV R A +++++ + R LP Sbjct: 252 GVGEITPPEEGGPVFETHFELLQTLKSWCFPVAAQTRLAYGAPELIAFHEAIGRQRDQLP 311 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 YDIDG+VYKV+ +LQ+++G +R PRW ++HK+ ++ T +L IDIQ+GRTG LTPVA Sbjct: 312 YDIDGVVYKVNSLALQRKMGFVSREPRWAVAHKYPAQEQLTTVLAIDIQVGRTGKLTPVA 371 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 +L PV +GG +TNATLHNED + +D+RVGD V+V+RAG+VIP+VV + Sbjct: 372 KLAPVFVGGVTVTNATLHNEDEARR-----------KDVRVGDTVIVRRAGDVIPEVVSV 420 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 ++++R DA FS P CP+C S VR+ A +RCTGGL C+AQ+ E + H+ Sbjct: 421 LLDKRVQDAPQFSMPRQCPVCGSDAVREEGE------ADYRCTGGLFCAAQRKEAILHYA 474 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 + A IEGLG + ++ + IR D++ L T + ++ + S + Sbjct: 475 HKRAVEIEGLGDKLVEQLVDT----GVIRTLPDLYRL------GFTSLASLDRMAEKSAS 524 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 NL ++ K + +L RF+F LGIRHVG A++LA+++ + Sbjct: 525 NLVAALEKSKQTTLPRFVFGLGIRHVGEATAKALARHFGQLDSIMDASE----------E 574 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFT 655 L+ V VG I+A++I F++ P N VE L V+ G + K V T Sbjct: 575 QLLEVADVGPIVAKSIRTFFEQPHNREVVEQLRACGVTWEEGAPAAVAPKPLSGKTFVIT 634 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL + R A++ + G V+ +S+KTD ++ G + GSKL KA+ LGV +++E L Sbjct: 635 GTLPGLSRDDAKDRIEAAGGKVAGSVSKKTDYVVAGLDAGSKLVKAEALGVAVIDEATLL 694 Query: 716 FLLQ 719 LL Sbjct: 695 ALLD 698 >gi|119774653|ref|YP_927393.1| DNA ligase (NAD(+)) [Shewanella amazonensis SB2B] gi|166216239|sp|A1S5R7|DNLJ_SHEAM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|119767153|gb|ABL99723.1| DNA ligase (NAD(+)) [Shewanella amazonensis SB2B] Length = 681 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 244/715 (34%), Positives = 382/715 (53%), Gaps = 54/715 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +I Q + E+ L EI+ H+ YY P I D+EYD L + A+ +P A +P+ Sbjct: 10 TIMQVKAEIQRLTAEINRHNIAYYVQDAPSIPDAEYDRLMNQLKALEAEYPQFA---EPD 66 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GG +V+H P LSL+ +N ED F R+ + + EP Sbjct: 67 SPTQRVGGAALNKFEQVSHLKPMLSLDNAFNEEDFVAFDKRLTDKVGSQV-----YCAEP 121 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191 K+DG +++ Y G AA RGDG GED+S +R I ++P L + P ++EVRGEV Sbjct: 122 KLDGLAVSLIYRNGVLERAATRGDGAVGEDISVNMRTIKSVPLRLQGDDIPALVEVRGEV 181 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 ++ + F ALND A G K + NPRNAA+G LR+L+ R L F+ + LG + Sbjct: 182 FMPRAAFEALNDRARAKGDKLFVNPRNAAAGSLRQLDSKITAERSLAFYAYALGVVQDDN 241 Query: 251 ------AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 A L+++ G PV+ V+ +++YY ++ R L ++IDG+V Sbjct: 242 GADLVLAPTHKGQLERLTAFGLPVSKEVKLCEGLAEVMAYYADILKRRDELAFEIDGVVI 301 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++ Q+QLG AR+PRW I+ KF ++ T L +D Q+GRTG +TPVARL+PV +G Sbjct: 302 KVNDIEAQQQLGFVARAPRWAIAFKFPAQEEMTVLEGVDFQVGRTGAVTPVARLKPVFVG 361 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++NATLHN D I L +++GD V+++RAG+VIP++V ++ R + Sbjct: 362 GVTVSNATLHNGDEIARL-----------GVKIGDTVIIRRAGDVIPQIVAVVPERRPDE 410 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 AQ FP CP+C S V R A RC+GGL C AQ+ E +KHF SR A I+ Sbjct: 411 AQDILFPDNCPVCGSLVERIEGE------AVARCSGGLFCEAQRREAIKHFASRKAMYID 464 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+G + ++ E + PAD+F L + +K+ + G S TNL +I + Sbjct: 465 GMGDKVVEQLIDKE----LVESPADLFKL------NVSKLTMLERMGTKSATNLVAAIEE 514 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + +L +F+++LGIR VG A +LAK++ S + D +LI+V V Sbjct: 515 AKTTTLPKFLYALGIREVGEATAANLAKHFRSLEAIRDA----------DVDALIQVEDV 564 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQR 663 G ++AQ + F+ P N+ ++AL+ + + + + V TGTL + R Sbjct: 565 GTVVAQHVAHFFAQPHNLEVIDALIAAGVNWPAIEKPSADAQPLLGQTWVLTGTLTSLGR 624 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+ + LGA V+ +S+ T ++ G+ GSKL KAQ+LG+ +++E + L+ Sbjct: 625 TEAKAKLEALGAKVAGSVSKNTHCVVAGEAAGSKLAKAQELGIPVLDEAGLIELI 679 >gi|326390897|ref|ZP_08212448.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus JW 200] gi|325993045|gb|EGD51486.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus JW 200] Length = 662 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 241/707 (34%), Positives = 381/707 (53%), Gaps = 49/707 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + L ++I+YH+ YY +P I D EYD L R + +P+ P+ P + Sbjct: 4 KERVKELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEFK---TPDSPSQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE TH +P LSL ++ +LR F R+ + + +E KIDG Sbjct: 61 VGGEPLKEFEPFTHVVPMLSLANAFSEGELRDFDRRVREAVG-----DVEYVVELKIDGL 115 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G F + RGDG GE+V+ ++ I +IP L ++ + VRGEV++ + Sbjct: 116 SVELIYENGIFTVGSTRGDGIVGENVTQNLKTIKSIPLRLKDDVS--LVVRGEVFMPRTS 173 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+E +G +ANPRNAA+G LR+L+P R L+ F+ L K K E Sbjct: 174 FEKLNEEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQKIEGRKFKTHIE 233 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ ++ GF V ++ + ++ E++++R LPYDIDG V KV++ ++ LG Sbjct: 234 TLEFLKEQGFKVIPIHKKCSNIDEVIKEIEEIRNLRDKLPYDIDGAVVKVNDLEKREILG 293 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + A+ PRW I+ K+ ++ T++LDI +Q+GRTG LTP A LEPV I G++++ ATLHNE Sbjct: 294 QTAKDPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVPISGSVVSRATLHNE 353 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYIK +DIR+GD V+V++AGE+IP+VV+++ ER + F P CP Sbjct: 354 DYIK-----------EKDIRIGDTVIVQKAGEIIPEVVEVVKEERTGQEREFVMPDRCPE 402 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + VR A RCTG L C AQ L + HF S+DA +IEGLG ++ Sbjct: 403 CGALAVRLPGE------AIRRCTG-LNCPAQLLRGIIHFASKDAMDIEGLGPAIINQLLS 455 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I AD++ L+ + GD SV NL ++I + + L+R +F Sbjct: 456 K----GLIHNIADLYYLKYEDLI------QLERMGDKSVKNLLNAIEESKTRDLDRLLFG 505 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +G++ A+ +A+++ + N + + +P +G +A++IV F+ Sbjct: 506 LGINLIGSKAAQVIAEHFKTMDNIMKA----------KFEDFTHLPDIGPKMARSIVSFF 555 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 +N+ +E L + VS+ E K V TG L+ R +A + + G Sbjct: 556 AEKQNVEIIEKLKNAGVNMKKLSKGKVSNIFEGKTFVLTGALENYTREEATRMIEERGGK 615 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 V+ +S+KTD I+VG +PGSKL+KAQ+LG+KI++E+QF +L+ N Sbjct: 616 VTNSVSKKTDYILVGKDPGSKLKKAQELGIKIIDEKQFEEMLKGENI 662 >gi|167855687|ref|ZP_02478444.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis 29755] gi|167853205|gb|EDS24462.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis 29755] Length = 675 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 255/704 (36%), Positives = 404/704 (57%), Gaps = 46/704 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 +L L +++ ++ Y+ P++ D+EYD L + P+L S + P Sbjct: 5 IETQLEHLREKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELITS---DSPTQ 61 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G + ++TH IP LSL+ ++ +DL F+ RI + N I F EPK+DG Sbjct: 62 RVGAKPLDGFAQITHEIPMLSLDNAFSDDDLIGFLRRIEDRIA-INSNQIEFCCEPKLDG 120 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISK 195 ++I Y G AA RGDG +GED++A IR I IP + N P +EVRGEV++ + Sbjct: 121 LAVSILYVDGVLTQAATRGDGTTGEDITANIRTIRNIPLKLKTNNPPHRLEVRGEVFMPQ 180 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF---FVHGLGKTSEIFAK 252 F LN++ +A G K +ANPRNAA+G LR+L+P ++ + G+ ++ + Sbjct: 181 QGFEQLNEKALAKGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYNIGVYESDDELPT 240 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 ++ LQ ++ LG PVN + A + ++Y ++++ RS+L YDIDG V KV+E +LQ Sbjct: 241 THFDRLQWLKTLGIPVNAEITLATGSQALTAFYQKIQAKRSSLGYDIDGTVLKVNEITLQ 300 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +QLG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NAT Sbjct: 301 EQLGFISKAPRWAIAYKFPAQEEMTILNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNAT 360 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I+ L I +GD V+++RAG+VIP++V ++ R +A+ +FP+ Sbjct: 361 LHNGDEIERL-----------GIAIGDTVIIRRAGDVIPQIVGVVAERRPDNAKKIAFPT 409 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S VVR A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 410 ACPVCNSAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIE 463 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + E I PAD+F L T + + G+ S N SI K +N +L R Sbjct: 464 QLMERE----LIHTPADLFKL------DHTTLMRLERMGEKSANNALQSIEKAKNTTLAR 513 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+F+LGIR VG A++LA ++ + Q D +L +V VG+++A + Sbjct: 514 FLFALGIRDVGESTAQNLANHFGTLDAIRQA----------DLDTLKQVQDVGEVVANRL 563 Query: 613 VEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 +F+Q P N+ VE L+ + ++ + +++K +V TGTL ++ R +A+ + Sbjct: 564 FQFWQEPHNVEVVEDLIAQGVKWQDVVPQEIADNPLKDKTVVLTGTLTQLTRDQAKALLQ 623 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 QLG VS +S KTD +I G+ GSKL KAQ+LGVKI++E++ + Sbjct: 624 QLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKILSEDELI 667 >gi|90021526|ref|YP_527353.1| DNA ligase (NAD+) [Saccharophagus degradans 2-40] gi|123090491|sp|Q21JI8|DNLJ_SACD2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|89951126|gb|ABD81141.1| DNA ligase, NAD-dependent [Saccharophagus degradans 2-40] Length = 674 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 256/711 (36%), Positives = 391/711 (54%), Gaps = 45/711 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + +L SL+ +I+YH+ YY P + D+EYD L + AI FP+L + P Sbjct: 5 DAVLDKLESLKNQINYHNKLYYVLDAPELPDAEYDKLFQELQAIEQQFPELV---TEDSP 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G S + H P LSL+ ++N+E+L F RI D S+ ++ EPK Sbjct: 62 TQRVGAAPLDSFASIEHKRPMLSLDNVFNVEELFAFDKRIRDRIN--ADASLEYSCEPKF 119 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193 DG ++ YE G+ AA RGDG GED++ +R I ++P L N P ++EVRGEVY+ Sbjct: 120 DGIAASLLYENGRLKTAATRGDGTVGEDITQNMRTIGSVPLKLEGNNIPAVLEVRGEVYM 179 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFA 251 K FL +N+E +A K + NPRNAA+G LR+LNP R L F + +G Sbjct: 180 PKAGFLRINEEALAKNEKTFVNPRNAAAGSLRQLNPQITAKRPLVFCAYNVGVVEGGELP 239 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 YE L ++ GF V+ R A +YY+ +++ R +L YDIDG+V+KV+ F L Sbjct: 240 ATHYETLTQLFEWGFLVSEERRIAKGIEECEAYYHYLEAKRESLAYDIDGIVFKVNAFDL 299 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I+HKF ++A T L D++ Q+GRTG +TPVA+L+P+ +GG ++NA Sbjct: 300 QERLGFVSRAPRWAIAHKFPAQEALTVLHDVEFQVGRTGAITPVAKLQPIFVGGVTVSNA 359 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+D I+ L IRVGD V+V+RAG+VIP++V I+ ++R DA+ FP Sbjct: 360 TLHNKDEIERL-----------GIRVGDTVIVRRAGDVIPQIVSIVESKRPQDAREIKFP 408 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+C S V AA RCTGGL C AQ+ E +KHF SR A +I+GLG + + Sbjct: 409 TACPVCGSDVESVEGE------AAIRCTGGLVCEAQRKESIKHFASRQAMDIDGLGDKIV 462 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 D ++ + AD++TL + + G S NL +I + SL+ Sbjct: 463 DQLVDNK----LVNDVADLYTL------DIPTLAGLERLGAKSAANLVAAIEASKQTSLD 512 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + +++LGIR VG AR+LA ++ + LI V VG ++A Sbjct: 513 KILYALGIREVGRATARNLANHFCTLNKVMDATQ----------EQLIEVTDVGPVVAHY 562 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 +V+F+ N +E L+ + + +E V TG+L+ + R +A++ + Sbjct: 563 VVDFFAQANNREVIEKLIAAGVNWPDIEKVDGVKPLEGTTYVLTGSLESLSRDEAKDKLQ 622 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA VS +S KT ++ G GSKL KA++LG+ I++E L LL+++ Sbjct: 623 ALGAKVSGSVSAKTTCVVAGPGAGSKLAKAEKLGLAILDEVGLLALLEEHG 673 >gi|91788454|ref|YP_549406.1| DNA ligase [Polaromonas sp. JS666] gi|123164833|sp|Q12AD4|DNLJ_POLSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91697679|gb|ABE44508.1| DNA ligase, NAD-dependent [Polaromonas sp. JS666] Length = 706 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 260/741 (35%), Positives = 391/741 (52%), Gaps = 62/741 (8%) Query: 1 MKKRQLIPIEALSIEQA--RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58 M + L S + A + +++L E+ H YY +P I DSEYD L + + Sbjct: 1 MATKDLFAQPEPSRQPASPAERMAALRAELHAHAHRYYVLDEPTIPDSEYDRLFKELQDL 60 Query: 59 AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYR 116 A+P+L P+ P ++GG+ V H +P LS+ + E + F TR+ + Sbjct: 61 EAAYPELL---TPDSPTQRVGGKPLDQFASVRHKVPMLSIRTETDTEATGAQNFDTRVRK 117 Query: 117 FWQKKD-DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR 175 + + + + E K DG +++RYE G V AA RGDG GE+V+ IR I IP Sbjct: 118 ELGLTESNPPVEYVAELKFDGLAMSLRYEHGVLVQAATRGDGEVGEEVTQNIRTIRQIPL 177 Query: 176 VLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV------GRKPYANPRNAASGILRRLNP 229 L + P ++EVRGEVY+ + DF ALND+ G K + NPRNAA+G +R+L+P Sbjct: 178 KLPSDAPPVLEVRGEVYMRRADFEALNDKQREKIAAGAKGEKTFVNPRNAAAGAVRQLDP 237 Query: 230 TDI-TRYLNFFVHGLG---------KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFH 279 R L+FF +G+G + E+LQ ++ GFPV + A+ Sbjct: 238 AIAAQRPLSFFAYGVGEVVLEAEQANPKNPWVATHMELLQALKSWGFPVAAQTKIAHGAS 297 Query: 280 GIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRL 339 +++++ M R +LPYDIDG+VYKV+ +LQKQ+G +R PRW ++HK+ ++ T + Sbjct: 298 ELIAFHQAMGQQRDSLPYDIDGVVYKVNSLALQKQMGFVSREPRWAVAHKYPAQEQLTTV 357 Query: 340 LDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGD 399 L I++Q+GRTG LTPVA+L PV +GG +TNATLHNED + +D+RVGD Sbjct: 358 LGIEVQVGRTGKLTPVAKLAPVFVGGVTVTNATLHNEDEARR-----------KDVRVGD 406 Query: 400 RVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCT 459 V+V+RAG+VIP+VV ++ ++R P A F+ P CP+C S VR+ A +RCT Sbjct: 407 TVIVRRAGDVIPEVVSVLPDKRLPGAPMFTMPRQCPVCGSDAVREEGE------ADYRCT 460 Query: 460 GGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT 519 GGL C AQ+ E + H+ R A IEGLG + ++ A IR D++ L Sbjct: 461 GGLFCGAQRKEAILHYAHRRAVEIEGLGDKLVEQLVD----ANVIRTLPDLYKL------ 510 Query: 520 STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQN 579 T + ++ + S NL ++ K + +L RF+F LGIRHVG A+ LA+++ + Sbjct: 511 GLTALASLDRMAEKSANNLLKALEKSKQTTLPRFLFGLGIRHVGEATAKELARHFGNLDA 570 Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGR 638 L+ V VG I+AQ+I F+ P N VE L G Sbjct: 571 IMDATQ----------EQLLAVSDVGSIVAQSIRTFFDQPHNREVVEQLRACGVHWEEGE 620 Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698 + K V TGTL + R +A++ V G V+ +S+KTD ++ G GSKL Sbjct: 621 PAAVAPKPLSGKTFVITGTLPTLSRDEAKDKVEAAGGKVAGSVSKKTDYVVAGTEAGSKL 680 Query: 699 EKAQQLGVKIMNEEQFLFLLQ 719 KAQ+LG+ +++E + LL Sbjct: 681 VKAQELGIAVIDEAALMRLLA 701 >gi|24374425|ref|NP_718468.1| DNA ligase, NAD-dependent [Shewanella oneidensis MR-1] gi|81460839|sp|Q8ED70|DNLJ_SHEON RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|24348997|gb|AAN55912.1|AE015728_1 DNA ligase, NAD-dependent [Shewanella oneidensis MR-1] Length = 689 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 246/713 (34%), Positives = 387/713 (54%), Gaps = 51/713 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + + A+ + +L Q ++ H+ YY P I DSEYD L ++ + +P + + Sbjct: 19 TPQTAQPLMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQQLKKLEAEYPQFVLA---D 75 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GG ++TH P LSL+ ++ D F R+ + F EP Sbjct: 76 SPTQRVGGLALAKFEQITHLKPMLSLDNAFDEADFTAFHKRVSDRVG-----QVSFCCEP 130 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEV 191 K+DG ++I Y G AA RGDG GED++ ++ I +IP L N PE++EVRGE Sbjct: 131 KLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLRLRGNNYPELVEVRGEA 190 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS--- 247 ++ K F ALN+ K + NPRNAA+G LR+L+ +R L+F+ + LG Sbjct: 191 FMPKAAFEALNERARLKDDKQFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVEPSS 250 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 AK YE LQ+++ G PV++ ++ + + + +YY ++ + RS LP++IDG+V KV+ Sbjct: 251 HELAKTHYEQLQQLKSWGLPVSSEIKVCDELNQVFAYYKDILTRRSDLPFEIDGVVMKVN 310 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + Q+ LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV +GG Sbjct: 311 DIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVT 370 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN D I+ L + VGD V+++RAG+VIP++V I+ R DAQ Sbjct: 371 VSNATLHNADEIERL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRSEDAQA 419 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 FP CP+C S V R A RC+GGL C AQ+ E +KHF SR A +I+G+G Sbjct: 420 IVFPQHCPVCGSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDIDGMG 473 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ E ++ PAD+F L + + + G S TNL +I + Sbjct: 474 DKIVEQLIDKE----LVQSPADLFKLTA------SMMTMLDRMGMKSATNLALAIEAAKT 523 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L RF+++LGIR VG A +LA ++ S LI V +G++ Sbjct: 524 TTLPRFLYALGIREVGEATAANLAAHFGSLDALRIAT----------IEQLIEVEDIGEV 573 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKA 666 +AQ + F+ P N+ ++AL+ + ++ + V TGTL ++ R+ A Sbjct: 574 VAQHVAHFFAQPHNLEVIDALIAAGVNWPAIEAPSADEQPLKGQTWVLTGTLNQLNRNDA 633 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK++ E++ L LL Sbjct: 634 KAQLQVLGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALLA 686 >gi|226310273|ref|YP_002770167.1| NAD-dependent DNA ligase [Brevibacillus brevis NBRC 100599] gi|254781268|sp|C0Z4D6|DNLJ_BREBN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|226093221|dbj|BAH41663.1| NAD-dependent DNA ligase [Brevibacillus brevis NBRC 100599] Length = 671 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 243/712 (34%), Positives = 384/712 (53%), Gaps = 48/712 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + A ++ L + I H+ Y++ +P I D EYD L R + +FPDL + P Sbjct: 1 MDRLTAETKIKELAKRIERHNRLYHEEDRPEISDQEYDQLMRELRELETSFPDL---QSP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GGE KV H P LSL +N ED+R F R+ + ++ + E Sbjct: 58 DSPSLRVGGEPLPFFEKVVHKTPMLSLGNAFNEEDIRDFDRRVRQAVG---SQAVRYVAE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YE G FV A RGDG +GED++ ++ I +IP L L P +EVRGE Sbjct: 115 LKIDGLAVSLHYENGLFVRGATRGDGTTGEDITQNLKTIRSIP--LRLTKPLTLEVRGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+SK F LN E G +ANPRN+A+G LR+L+P +R L+ F++G+G Sbjct: 173 YMSKGAFEKLNKEREERGEALFANPRNSAAGSLRQLDPKIAASRQLDTFIYGIGDLQGET 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + E L + LGF VN R + ++++ R LPY+IDG+V KVD ++ Sbjct: 233 VESHSEGLDLLETLGFMVNQERRVFDDVDELLAFIAGWTEKRPHLPYEIDGMVIKVDSYA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG A+SPRW I++KF ++A T L I++ +GRTG +TP A L+PV++ G + Sbjct: 293 QQEELGFTAKSPRWAIAYKFPAEEAVTILEGIEVSVGRTGNVTPTALLKPVSLAGTTVKR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ + + +GD V+VK+AG++IP+++ ++ R + PF+ Sbjct: 353 ASLHNEDIIR-----------EKGLLIGDHVVVKKAGDIIPEIIAVLPERRTGNEVPFAM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S +VR A RC + C A E + HFVSR A NI+GLG++ Sbjct: 402 PTHCPECGSELVRLEEE------VALRCINPM-CPALIREGMIHFVSRTAMNIDGLGEKV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + ++ I AD++ L +++ + + G+ SV NL +I + SL Sbjct: 455 VAQLYRD----GIIHSVADLYYLHQQRD----ALLGLERMGEKSVDNLLAAIEASKENSL 506 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIR VGA+ AR LA+++ + Q + ++ +G +A Sbjct: 507 ERVLFGLGIRLVGAKAARVLAEHFGNIDTIMQASE----------EEITQIDEIGPKMAA 556 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 ++V ++ P+ +E L + E K +V TGTL ++ R +A+ Sbjct: 557 SLVNYFAQPQAQAVIERLRAAGVNMEYKGIRIESGADLPFSGKTIVLTGTLTQMSRQEAE 616 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 E + +LG V+ +S+KTD++I G+ GSKLEKA++LGV +M+E FL +L+ Sbjct: 617 EAIARLGGKVTGSVSKKTDLVIAGEKAGSKLEKAEKLGVAVMDEAGFLQVLE 668 >gi|56418811|ref|YP_146129.1| NAD-dependent DNA ligase LigA [Geobacillus kaustophilus HTA426] gi|81348272|sp|Q5L3B9|DNLJ_GEOKA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56378653|dbj|BAD74561.1| DNA ligase (polydeoxyribonucleotide synthase[NAD+]) [Geobacillus kaustophilus HTA426] Length = 670 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 259/717 (36%), Positives = 397/717 (55%), Gaps = 54/717 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + +QA + + L + + + YY +P + D+EYD L + AI +P+L S Sbjct: 1 MDRQQAERRAAELRELLHRYGYEYYVLDRPSVPDAEYDRLMQELMAIEEQYPELKTS--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +IGG + KVTH +P +SL ++ DLR F R+ ++ + E Sbjct: 58 DSPTQRIGGPPLEAFRKVTHVVPMMSLANAFDEGDLRDFDRRVR-----QEVGEAAYVCE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG +GED++ +R I ++P L + +E RGE Sbjct: 113 LKIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLRTIRSLPLRLKEPVS--LEARGEA 170 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 ++ K FL LN+E A G + +ANPRNAA+G LR+L+P +R L+ FV+GL E+ Sbjct: 171 FMPKASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELG 230 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + E L ++ LGF VN R+ ++++ NE R LPY+IDG+V KVD F+ Sbjct: 231 IESHSEALDYLQALGFKVNPERRRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFA 290 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG A+SPRW I++KF ++ T L+ I++ +GRTG++TP A LEPV + G + Sbjct: 291 QQRELGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQR 350 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED+I+ +DIR+GD V++K+AG++IP+VV ++V+ R D PF+ Sbjct: 351 ATLHNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFAM 399 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ ERL HF SR A NIEGLG++ Sbjct: 400 PTHCPECESELVRLEGE------VALRCLNP-NCPAQLRERLIHFASRAAMNIEGLGEKV 452 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A +R AD++ L + Q + G+ S TNL +I + SL Sbjct: 453 VTQLFN----AGLVRDVADLYRLTKEQLIG------LERMGEKSATNLLAAIEASKQNSL 502 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIR+VGA+ A+ LA+++ + + + L+ VP +G+ +A Sbjct: 503 ERLLFGLGIRYVGAKAAQLLAEHFETMERLERATK----------EELMAVPEIGEKMAD 552 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 AI F+ P ++ L + E S K +V TG L + R++ Sbjct: 553 AITAFFAQPEATELLQELRAYGVNMAYKGPKRSAEAPADSAFAGKTVVLTGKLASMSRNE 612 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A+E + +LG V+ +SR TD++I G++ GSKLEKAQQLG++I +E +FL + + Sbjct: 613 AKEEIERLGGRVTGSVSRSTDLVIAGEDAGSKLEKAQQLGIEIWDESRFLQEINRGK 669 >gi|307248328|ref|ZP_07530352.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306855149|gb|EFM87328.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 682 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 253/708 (35%), Positives = 401/708 (56%), Gaps = 46/708 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +L +L Q++ ++ Y+ P++ D+EYD L + P+ + + P ++ Sbjct: 16 AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + +VTH IP LSL+ ++ E+L F+ R+ + + ++ F EPK+DG Sbjct: 73 GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKND 197 ++I Y G AA RGDG +GED+++ IR I IP N P +EVRGEV++ + Sbjct: 132 VSILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKG 191 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGKTSEIFAKGQ 254 F ALN+ + G K +ANPRNAA+G LR+L+P + N + G+ ++ + Sbjct: 192 FEALNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATH 251 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y ++++ R TL YDIDG V KV++ LQ+Q Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V +++ R +A+ FP+ C Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E + PAD+F L T + + G+ S N +SI K +N +L RF+ Sbjct: 475 MECE----LVHTPADLFKL------DHTTLMRLERMGEKSAQNALNSIEKAKNTTLARFL 524 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ + + L V VG+++A IV Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574 Query: 615 FYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+Q P N+ VE L+ + + + ++ K +V TGTL ++ R +A+ + Sbjct: 575 FWQEPHNVAVVEDLISQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 G VS +S KTD +I G+ GSKL KAQ+LGVK++ E++F+ L + Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIALTGEN 682 >gi|310768269|gb|ADP13219.1| NAD-dependent DNA ligase LigA [Erwinia sp. Ejp617] Length = 670 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 239/714 (33%), Positives = 397/714 (55%), Gaps = 51/714 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E + +++ L + +++ Y+ P + D+EYD L + P+L S + Sbjct: 1 MESVQDKITHLRTLLRHYEYQYHVLDAPAVPDAEYDRLMGELRELEAQHPELLTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G +V H +P LSL+ ++ E F R+ + DD I F E K Sbjct: 58 PTQRVGAAPLSVFEQVRHEVPMLSLDNAFDEESYLAFNKRVQDRLKSTDD--ITFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YEKG+ V AA RGDG +GE+++A +R I IP LS + PE +EVRGEV+ Sbjct: 116 LDGLAVSLLYEKGELVRAATRGDGTTGENITANVRTIRAIPLRLSGDNIPERLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + F +N++ + G+K +ANPRNAA+G LR+L+P R L FF +GLG Sbjct: 176 MPLVGFEQMNEQARSSGQKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGEM 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + LQ+ + G PV++ VR ++ ++ +Y+++++ R TL +DIDG+V KVD + Sbjct: 236 PRSHRARLQRFKAWGLPVSDRVRLCHSPAEVLDFYHQVEAARPTLGFDIDGVVIKVDSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVLVAGVMVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +++GDRV+++RAG+VIP+V+ ++ +A+ +F Sbjct: 356 ATLHNADEIERL-----------GLKIGDRVVIRRAGDVIPQVMSVVETG--DNAREIAF 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R RCTGGL C AQ+ LKHFVSR A +I+G+G++ Sbjct: 403 PTRCPVCGSDVERVEGE------VVARCTGGLICGAQRKGALKHFVSRRALDIDGMGEKI 456 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D E ++ PA++F L K+ + G S N+ +++ K + + Sbjct: 457 IDQLVDKE----YVKNPAELFELTA------GKLTGLDRMGPKSAQNVVNALVKAKQTTF 506 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGI VG A +LA ++ + D +L+ V VG ++A Sbjct: 507 ARFLYALGISEVGEATAANLAAHFGTLDALMAA----------DLDALMAVQDVGKVVAS 556 Query: 611 AIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + F N + L+ + + + + + S K +V TG+L + R +A Sbjct: 557 HVRNFLDEESNREIIRLLVDKAGVNWPQVMVVKAEEIDSPFAGKTVVLTGSLSILSRDEA 616 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ + LGA VS +S+KTD++I G+ GSKL KA++LG+ +++E++ + LL + Sbjct: 617 KDRLQALGAKVSGSVSKKTDLVIAGEAAGSKLAKARELGIDVIDEQEMIRLLGE 670 >gi|94310370|ref|YP_583580.1| DNA ligase, NAD-dependent [Cupriavidus metallidurans CH34] gi|123383876|sp|Q1LNG5|DNLJ_RALME RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|93354222|gb|ABF08311.1| DNA ligase, NAD(+)-dependent [Cupriavidus metallidurans CH34] Length = 721 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 261/749 (34%), Positives = 380/749 (50%), Gaps = 74/749 (9%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 A S + + L +E+ + YY P I D++YDAL A+ P+L Sbjct: 13 SAPSGDSPAERAQWLREELERYSYQYYVLDAPTIPDADYDALFIELQALEAEHPELL--- 69 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS---- 125 P+ P ++GG + V H +P LSL + ED+ F R + + + Sbjct: 70 TPDSPTQRVGGAPLSAFDSVRHRVPMLSLNNGFEDEDVINFDRRCAQGLGRATAAAPAAF 129 Query: 126 ---------------------------IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158 + + E K DG +++RYE G V AA RGDG Sbjct: 130 ATPAAPADDLFSAADAAEAAANTAGNAVEYACELKFDGLAMSLRYENGTLVQAATRGDGE 189 Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218 +GEDV+A +R I IP L P ++EVRGEV++ + DF LN G K + NPRN Sbjct: 190 TGEDVTANVRTIKAIPLKLRGTAPSVLEVRGEVFMYRADFDKLNARQAESGEKTFVNPRN 249 Query: 219 AASGILRRLNPT-DITRYLNFFVHGLG-KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQAN 276 AA+G LR+L+P R L+FF +G+G ML LG PV + R Sbjct: 250 AAAGSLRQLDPRITAKRPLSFFAYGVGEMEGFDRPGTHSAMLDGFAKLGLPVCDERRVVR 309 Query: 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAS 336 G++S++ E+ R LPYDIDG+VYKV+ + Q+QLG +R+PR+ ++HKF ++ + Sbjct: 310 GAQGLLSFHREVGERRDQLPYDIDGVVYKVNAIAEQEQLGFVSRAPRFALAHKFPAQEMT 369 Query: 337 TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIR 396 T + DI++Q+GRTG +TPVARL PV +GG +TNATLHNED I+ +D+ Sbjct: 370 TTVEDIEVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEIRR-----------KDVH 418 Query: 397 VGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456 +GD V+V+RAG+VIP+VV +++ R DA+ F P+ CP+C S V R A Sbjct: 419 IGDTVIVRRAGDVIPEVVAVVLERRPADARAFVMPTECPVCGSHVERLEGE------AIA 472 Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516 RCTGGL C+AQ+ + L HF R A +IEGLG + ++ +R PAD++ L Sbjct: 473 RCTGGLICAAQRKQALLHFAQRRAMDIEGLGDKVVEQLVD----LGIVRTPADLYKL--- 525 Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576 K+ + D S +NL +I + R ++ RFIF+LGIRHVG A+ LAK++ Sbjct: 526 ---GVAKLAALDRMADKSASNLVAAIEQSRETTMNRFIFALGIRHVGEATAKDLAKHFGK 582 Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PS 635 N + V VG ++AQ+I F P N+ +E L + Sbjct: 583 LDNLLAADEAALLE----------VNDVGPVVAQSIANFIAEPHNVEVIEQLRAAGVHWA 632 Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695 + K V TGTL + R A+E + GA V+ +S+KTD ++ G G Sbjct: 633 ETEPTARAPLPLAGKTFVLTGTLPTMSREDAKEKLEAAGAKVAGSVSKKTDYVVAGAEAG 692 Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 SKLEKAQ LGV +++EE L LL + Sbjct: 693 SKLEKAQTLGVAVLDEEGMLKLLAEVGAA 721 >gi|170692136|ref|ZP_02883299.1| DNA ligase, NAD-dependent [Burkholderia graminis C4D1M] gi|170142566|gb|EDT10731.1| DNA ligase, NAD-dependent [Burkholderia graminis C4D1M] Length = 693 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 261/711 (36%), Positives = 391/711 (54%), Gaps = 49/711 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 L E+ + YY +P + D+EYD L + ++I PDL P+ P + Sbjct: 20 AARAEWLRAELERANYAYYVLDQPDLPDAEYDKLFKELESIEAEHPDLIV---PDSPTQR 76 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ---KKDDNSIFFTLEPKI 134 +GGE V H P LSL + ED+ F R+ K+ + + E K Sbjct: 77 VGGEAASGFEPVVHDQPMLSLNNGFADEDIIAFDKRVGDALGNNAKEPPVPVDYATELKF 136 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193 DG I++RY G FV AA RGDG +GE+V+ IR + +IP L P I++VRGEV + Sbjct: 137 DGLAISLRYVDGVFVQAATRGDGATGENVTENIRTVRSIPLRLKGKRVPHILDVRGEVLM 196 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIFA 251 K DF LN+ A G K +ANPRNAA+G LR+L+P R L+FF +G+G Sbjct: 197 FKRDFERLNERQRAAGHKEFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGIEMP 256 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 E+L + LG PVN+ G++++++ + R LPYDIDG+VYKV+ Sbjct: 257 ATHSELLDWYKELGLPVNSERAVVKGAEGLLAFFHAVGEKRDKLPYDIDGVVYKVNRRDE 316 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+ LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNA Sbjct: 317 QEALGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNA 376 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHNED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA+ F P Sbjct: 377 TLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSALIDRRPDDAREFVMP 425 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+C S + R + A RCTGGL C AQ+ + L HF R A +I+GLG++ + Sbjct: 426 THCPVCGSNIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKII 479 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 D + +R PAD+F L + + + F D S NL DS+ K R+ +L Sbjct: 480 DQLVEQN----LVRTPADLFNL------GFSTLAQLDRFADKSAQNLLDSLEKARHTTLS 529 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RFI++LGIRHVG A+ LAK++ S + +L+ V VG ++A++ Sbjct: 530 RFIYALGIRHVGESTAKDLAKHFGSLDPIMEA----------SVEALLEVNDVGPVVAES 579 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 I +F+ N +E L + + + K +V TGTL + R +A+E Sbjct: 580 IHQFFAEEHNRTVIEQLRAHGKVTWPEGPPAPRAPQGVLAGKTIVLTGTLPNLAREEAKE 639 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ LL+ Sbjct: 640 MLEAAGAKVAGSVSKKTDYVVAGAEAGSKLVKAEELGIPVLDEDGMRKLLE 690 >gi|196250518|ref|ZP_03149209.1| DNA ligase, NAD-dependent [Geobacillus sp. G11MC16] gi|196210008|gb|EDY04776.1| DNA ligase, NAD-dependent [Geobacillus sp. G11MC16] Length = 670 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 258/717 (35%), Positives = 399/717 (55%), Gaps = 54/717 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + +QA++ + L + ++ + YY +P + D+EYD L + AI +P+L S Sbjct: 1 MDRQQAKRRATELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEKQYPELKTS--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +IGG + KVTH +P +SL +N DLR F R+ ++ + E Sbjct: 58 DSPTQRIGGPPLEAFRKVTHRVPMMSLANAFNEGDLRDFDRRVR-----QEVGEAAYVCE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG +GED++ ++ I ++P L+ + +E RGE Sbjct: 113 LKIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLNEPVS--LEARGEA 170 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 ++ K FL LN+E A G + +ANPRNAA+G LR+L+P +R L+ FV+GL E+ Sbjct: 171 FMPKASFLRLNEERQARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELG 230 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + L ++ LGF VN R+ T ++++ NE K R LPY+IDG+V KVD F+ Sbjct: 231 IESHSAALSYLQSLGFKVNPERRRCATIDEVIAFVNEWKEKRPQLPYEIDGIVIKVDSFA 290 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG A+SPRW I++KF ++ T L+ I++ +GRTG +TP A LEPV + G + Sbjct: 291 QQRQLGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGAVTPTAILEPVRVAGTTVQR 350 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED+I+ +DIR+GD V++K+AG++IP+VV ++V+ R D PF+ Sbjct: 351 ATLHNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDEVPFTM 399 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ ERL HF SR A NIEGLG++ Sbjct: 400 PTHCPECESELVRLDGE------VALRCLNPK-CPAQLRERLIHFASRSAMNIEGLGEKV 452 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A + AD++ L + Q + G+ S NL +I + SL Sbjct: 453 VTQLFN----AGLVHDVADLYQLTKEQLVG------LERMGEKSAANLLAAIEASKQNSL 502 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIR+VGA+ A+ LA+++ + + L+ VP +G+ +A Sbjct: 503 ERLLFGLGIRYVGAKAAQLLAEHFETMERLEAATK----------DELMAVPEIGEKMAD 552 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 +I ++ P + + L + E SS + K +V TG L + R++ Sbjct: 553 SITTYFSQPEAVELLNELRTYGVNMAYKGRKRTAETPASSVLAGKTVVLTGKLASMSRNE 612 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A+E + +LG V+ +SR TDI+I G++ GSKL+KAQQLG++I +E +FL + + Sbjct: 613 AKEQIERLGGRVTGSVSRSTDIVIAGEDAGSKLDKAQQLGIEIWDETRFLQEISREE 669 >gi|166216286|sp|A0KVI4|DNLJ_SHESA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 689 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 247/713 (34%), Positives = 389/713 (54%), Gaps = 51/713 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + A+ + +L Q ++ H+ YY P I DSEYD L +R + +P + + Sbjct: 19 TPHNAQPIMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAA---D 75 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GG ++TH P LSL+ ++ D F R+ + F EP Sbjct: 76 SPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVSDRVG-----EVSFCCEP 130 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEV 191 K+DG ++I Y G AA RGDG GED++ ++ I +IP L N PE++EVRGE Sbjct: 131 KLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVRGEA 190 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---KTS 247 ++ K F ALN+ K + NPRNAA+G LR+L+ +R L+F+ + LG TS Sbjct: 191 FMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVEPTS 250 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 AK YE LQ+++ G PV++ ++ + + +YY ++ + R+ LP++IDG+V KV+ Sbjct: 251 HELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVVMKVN 310 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + Q+ LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV +GG Sbjct: 311 DIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVT 370 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN D I L + VGD V+++RAG+VIP++V I+ R DA+ Sbjct: 371 VSNATLHNADEIARL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPEDAKA 419 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 +FP CP+C S V R A RC+GGL C AQ+ E +KHF SR A +I+G+G Sbjct: 420 IAFPQHCPVCGSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDIDGMG 473 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ E ++ PAD+F L + + + G S TNL +I + Sbjct: 474 DKIVEQLIDKE----LVQSPADLFKLTA------SMMTMLDRMGIKSATNLALAIEAAKT 523 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L RF+++LGIR VG A +LA ++ S + LI+V +G++ Sbjct: 524 TTLPRFLYALGIREVGETTAANLATHFGSLEALRVAT----------IEQLIQVEDIGEV 573 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKA 666 +AQ + F+ P N+ ++AL+ + ++ + V TGTL ++ R+ A Sbjct: 574 VAQHVAHFFAQPHNLEVIDALIAAGVNWPAIAAPSADEQPLKGQTWVLTGTLNQLNRNDA 633 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK++ E++ L LL Sbjct: 634 KAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALLA 686 >gi|117920017|ref|YP_869209.1| DNA ligase, NAD-dependent [Shewanella sp. ANA-3] gi|117612349|gb|ABK47803.1| DNA ligase, NAD-dependent [Shewanella sp. ANA-3] Length = 691 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 247/713 (34%), Positives = 389/713 (54%), Gaps = 51/713 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + A+ + +L Q ++ H+ YY P I DSEYD L +R + +P + + Sbjct: 21 TPHNAQPIMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAA---D 77 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GG ++TH P LSL+ ++ D F R+ + F EP Sbjct: 78 SPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVSDRVG-----EVSFCCEP 132 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEV 191 K+DG ++I Y G AA RGDG GED++ ++ I +IP L N PE++EVRGE Sbjct: 133 KLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVRGEA 192 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---KTS 247 ++ K F ALN+ K + NPRNAA+G LR+L+ +R L+F+ + LG TS Sbjct: 193 FMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVEPTS 252 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 AK YE LQ+++ G PV++ ++ + + +YY ++ + R+ LP++IDG+V KV+ Sbjct: 253 HELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVVMKVN 312 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + Q+ LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV +GG Sbjct: 313 DIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVT 372 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN D I L + VGD V+++RAG+VIP++V I+ R DA+ Sbjct: 373 VSNATLHNADEIARL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPEDAKA 421 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 +FP CP+C S V R A RC+GGL C AQ+ E +KHF SR A +I+G+G Sbjct: 422 IAFPQHCPVCGSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDIDGMG 475 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ E ++ PAD+F L + + + G S TNL +I + Sbjct: 476 DKIVEQLIDKE----LVQSPADLFKLTA------SMMTMLDRMGIKSATNLALAIEAAKT 525 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L RF+++LGIR VG A +LA ++ S + LI+V +G++ Sbjct: 526 TTLPRFLYALGIREVGETTAANLATHFGSLEALRVAT----------IEQLIQVEDIGEV 575 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKA 666 +AQ + F+ P N+ ++AL+ + ++ + V TGTL ++ R+ A Sbjct: 576 VAQHVAHFFAQPHNLEVIDALIAAGVNWPAIAAPSADEQPLKGQTWVLTGTLNQLNRNDA 635 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK++ E++ L LL Sbjct: 636 KAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALLA 688 >gi|303250616|ref|ZP_07336813.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252937|ref|ZP_07534825.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650604|gb|EFL80763.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859575|gb|EFM91600.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 682 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 253/708 (35%), Positives = 402/708 (56%), Gaps = 46/708 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +L +L Q++ ++ Y+ P++ D+EYD L + P+ + + P ++ Sbjct: 16 AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + +VTH IP LSL+ ++ E+L F+ R+ + + ++ F EPK+DG Sbjct: 73 GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKND 197 ++I Y G AA RGDG +GED+++ IR I IP N P +EVRGEV++ + Sbjct: 132 VSILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKG 191 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGKTSEIFAKGQ 254 F ALN+ + G K +ANPRNAA+G LR+L+P + N + G+ ++ + Sbjct: 192 FEALNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATH 251 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y ++++ R TL YDIDG V KV++ LQ+Q Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V +++ R +A+ FP+ C Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E + PAD+F L+ T + + G+ S N +SI K +N +L RF+ Sbjct: 475 MERE----LVHTPADLFKLE------HTTLMRLERMGEKSAQNALNSIEKAKNTTLARFL 524 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ + + L V VG+++A IV Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574 Query: 615 FYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+Q P N+ VE L+ + + + ++ K +V TGTL ++ R +A+ + Sbjct: 575 FWQEPHNVTVVEDLISQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 G VS +S KTD +I G+ GSKL KAQ+LGVK++ E++F+ L + Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLTKAQELGVKVLTEQEFIALTGEN 682 >gi|126462048|ref|YP_001043162.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17029] gi|166216229|sp|A3PJ74|DNLJ_RHOS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|126103712|gb|ABN76390.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17029] Length = 704 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 303/714 (42%), Positives = 437/714 (61%), Gaps = 17/714 (2%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P++ L+ +A EL+ L + I + Y+ + P I D++YDALK R AI FP+L R Sbjct: 6 PVDQLTEAEAATELARLAEAIEAANTAYHTHDAPQISDADYDALKLRNRAIEEQFPELRR 65 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 S + P +++GG + KV H + LSLE +++ ++ +I RI R+ D + Sbjct: 66 S---DSPSDRVGGALAEGFAKVRHEVRMLSLENAFDLAEVEDWIERIRRYLGHVGD--LL 120 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 FT EPKIDG +++RYEKG+ V AA RGDG +GE+V+ R I +P L P+++EV Sbjct: 121 FTAEPKIDGLSLSLRYEKGRLVQAATRGDGETGENVTENARTIADLPTELDGA-PDLLEV 179 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY+S DF ALN A G++ +ANPRNAA+G LR+L+P +R L FF + G Sbjct: 180 RGEVYMSHEDFAALNGRQEAAGQRLFANPRNAAAGSLRQLDPAVTASRPLRFFAYAWGAH 239 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE A Q+E + ++ LGF N R +++ + E++ R+ L YDIDG+VYKV Sbjct: 240 SEPLAATQHEAIARLAALGFATNPLTRLCTGPEELLAQHAEIERQRAALGYDIDGVVYKV 299 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ +LQ++LG RA +PRW I+HKFA + A T+L IDIQ+GRTG L+PVARL+PV +GG Sbjct: 300 DDLALQRRLGFRASTPRWAIAHKFAAQLAWTQLEGIDIQVGRTGALSPVARLKPVTVGGV 359 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ NATLHNEDYI G D+ G+ +RGG+DIRVGD V V RAG+VIPKV D+ ++ R A Sbjct: 360 VVANATLHNEDYIAGRDSKGQEIRGGKDIRVGDWVQVYRAGDVIPKVADVDLDRRPEGAA 419 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + FP CP C S +R+ + RCTGGL C AQQ+ERLKHFVSR AF+IEGL Sbjct: 420 RYRFPETCPECGSEAIREPG------DSVRRCTGGLICPAQQVERLKHFVSRAAFDIEGL 473 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q++ ++ IR PADIF L R + ++EN G+G S NL+ +I RR Sbjct: 474 GAKQVEALWRD----GWIRQPADIFELPNRYREGIQRLENREGWGRKSAENLFAAIEARR 529 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 I+L R IF+LGIRHVG A LA +Y S+ F + +W L+ + VG Sbjct: 530 RIALHRLIFALGIRHVGETTATLLATHYGSWAAFEAAMTRAEVGAGPEWQDLLSIDGVGA 589 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++A ++V + AV+AL ++ V+S + K +VFTGTL+K+ R +A Sbjct: 590 VLATSLVTAFHQEAERAAVDALAAHLTVEDAEVRAPVASPVAGKIVVFTGTLEKMSRAEA 649 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA VS +S +TD+++ G GSK ++A LG++ ++E+ +L L+ Sbjct: 650 KARAEALGAKVSGSVSARTDVVVAGPGAGSKAKQAAALGIETIDEDGWLRLIGD 703 >gi|271501855|ref|YP_003334881.1| DNA ligase [Dickeya dadantii Ech586] gi|270345410|gb|ACZ78175.1| DNA ligase, NAD-dependent [Dickeya dadantii Ech586] Length = 683 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 254/714 (35%), Positives = 397/714 (55%), Gaps = 50/714 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 I ++ +L ++ YH+ Y+ P I D+EYD L + A P+L P+ Sbjct: 11 DIAAVAAQVEALRAQLRYHEYKYHVEDAPEIPDAEYDTLMNTLKVLEQAHPELV---TPD 67 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++G + V H +P LSL+ +++ F RI K+D + F E Sbjct: 68 SPTQRVGAAPLDAFDTVAHDVPMLSLDNVFDEASFLAFCKRINDRL--KNDAELTFCCEL 125 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-IIEVRGEV 191 K+DG +++ YE+G V AA RGDG +GE+++A IR I IP L + +EVRGEV Sbjct: 126 KLDGLAVSLLYEQGVLVRAATRGDGTTGENITANIRTIGAIPLRLHGDNIPTRLEVRGEV 185 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 ++ F ALN+E G K +ANPRNAA+G LR+L+P TR L F +G+G Sbjct: 186 FMKHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITATRPLTFLCYGVGLVEGGT 245 Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 ++ L + R G PV++ +R ++++Y +++ R TL +DIDG+V KV+E Sbjct: 246 LPDTHWQRLMQFRDWGLPVSDRIRLCTGSEAVLNFYRQVEQERETLGFDIDGVVIKVNEL 305 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG AR+PRW ++ KF ++ T L D++ Q+GRTG +TPVARLEPV + G +++ Sbjct: 306 ALQERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVARLEPVAVAGVVVS 365 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L I++GDRV V+RAG+VIP++V ++++ER DA+P Sbjct: 366 NATLHNADEIERL-----------GIQIGDRVAVRRAGDVIPQIVSVVLSERPSDARPIV 414 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP CP+C S + R A RCTGGL C+AQ+ E LKHFVSR A ++EG+G + Sbjct: 415 FPEHCPVCGSELERVEGE------AVTRCTGGLFCAAQRKEALKHFVSRRALDVEGMGDK 468 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E ++ PAD+ L + + G S NL +++K ++ + Sbjct: 469 IIDQLVEKE----YVKTPADLLRL------DIGILTRLDRMGPKSAQNLVSALDKAKSTT 518 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A +LA ++ + D +L +VP VG ++A Sbjct: 519 FARFLYALGIRDVGEATAANLASHFGTLDALQAA----------DLEALQQVPDVGIVVA 568 Query: 610 QAIVEFYQNPRNICAVEALLK-EVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRH 664 + F N ++AL+ EV + +S K +V TG+L ++ R Sbjct: 569 THVRHFLDEAHNQQVIQALISDEVGIHWPDPVRVDVEASTSPFAGKTVVLTGSLSQLSRD 628 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 629 EAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEAEMMRLL 682 >gi|251793989|ref|YP_003008721.1| NAD-dependent DNA ligase LigA [Aggregatibacter aphrophilus NJ8700] gi|247535388|gb|ACS98634.1| DNA ligase, NAD-dependent [Aggregatibacter aphrophilus NJ8700] Length = 671 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 249/708 (35%), Positives = 394/708 (55%), Gaps = 45/708 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 ++++ L + + YH+ Y+ +P I DSEYD L + A+ P L + + P Sbjct: 4 SIQQQIDDLRKTLRYHEYQYHVLDEPQIPDSEYDRLFHQLKALEQQHPALITA---DSPT 60 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G ++ H +P LSL+ ++ E+ F+ RI + F EPK+D Sbjct: 61 QRVGARPLSEFAQIKHELPMLSLDNAFSDEEFLAFVKRIQDRLVFAP-EPLTFCCEPKLD 119 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194 G ++I Y G AA RGDG +GED++ IR I IP L + N P +EVRGEV++ Sbjct: 120 GLAVSILYVNGVLTQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMP 179 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF-AK 252 + F LN+ + G K +ANPRNAA+G LR+L+P ++ F + +G I Sbjct: 180 HDGFERLNERALEQGEKTFANPRNAAAGSLRQLDPKITSQRPLVFNAYSIGVAQRIDLPP 239 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 +E LQ ++ +G PVN+ +R + ++++Y M RS+L YDIDG V KV++ LQ Sbjct: 240 THFERLQWLKSIGVPVNSEIRLCDGIENVLNFYRTMMEKRSSLGYDIDGTVLKVNDIELQ 299 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+L+PV + G ++NAT Sbjct: 300 QRLGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLQPVFVAGVTVSNAT 359 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I+ L +I +GD V+++RAG+VIP+++ ++ + R +A+ FP+ Sbjct: 360 LHNGDEIERL-----------NIAIGDTVIIRRAGDVIPQIIGVVHDRRPANARQIVFPT 408 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S +VR A RCTGGL C+AQ+ E LKHFVSR A NI+G+G + ++ Sbjct: 409 HCPVCDSLIVRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMNIDGVGAKLIE 462 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 E + PAD+F L T I + G S N S+ K ++ +L R Sbjct: 463 QLVDRE----LVHTPADLFKL------DLTTITRLERMGPKSAENALASLEKAKHTTLAR 512 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LGIR VG IA +LA ++ + + D L +VP VG+++A I Sbjct: 513 FIFALGIRDVGEAIALNLANHFKTLEALQNA----------DLEQLQQVPDVGEVVANRI 562 Query: 613 VEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F++ N+ V L+ + ++ + ++K +V TGTL ++ R+ A+ + Sbjct: 563 FVFWREEHNVAVVNDLIAQGVHWETVEVQEVKENPFKDKTVVLTGTLSQMGRNDAKVLLQ 622 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 QLGA VS +S KTD +I G+ GSKL KA +LGV++++EE+F + Sbjct: 623 QLGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFWAWVN 670 >gi|297528690|ref|YP_003669965.1| DNA ligase, NAD-dependent [Geobacillus sp. C56-T3] gi|297251942|gb|ADI25388.1| DNA ligase, NAD-dependent [Geobacillus sp. C56-T3] Length = 670 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 259/717 (36%), Positives = 395/717 (55%), Gaps = 54/717 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + +QA + + L + + + YY +P + D+EYD L + AI +P+L S Sbjct: 1 MDRQQAERRAAELRELLHRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTS--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +IGG + KVTH IP +SL ++ DLR F RI ++ + E Sbjct: 58 DSPTQRIGGPPLEAFRKVTHRIPMMSLANAFDEGDLRDFDRRIR-----QEVGEAAYVCE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG +GED++ ++ I ++P L + +E RGE Sbjct: 113 LKIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLKEPVS--LEARGEA 170 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 ++ K FL LN+E A G + +ANPRNAA+G LR+L+P +R L+ FV+GL E+ Sbjct: 171 FMPKASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELG 230 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + E L ++ LGF VN R+ ++++ NE R LPY+IDG+V KVD F+ Sbjct: 231 IESHSEALDYLQALGFKVNPERRRCANIDEVIAFINEWHEKRPQLPYEIDGIVIKVDSFA 290 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG A+SPRW I++KF ++ T L+ I++ +GRTG++TP A LEPV + G + Sbjct: 291 QQRELGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQR 350 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED+I+ +DIR+GD V++K+AG++IP+VV ++V+ R D PF Sbjct: 351 ATLHNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFVM 399 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ ERL HF SR A NIEGLG++ Sbjct: 400 PTHCPECESELVRLDGE------VALRCLNPK-CPAQLRERLIHFASRAAMNIEGLGEKV 452 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A + AD++ L + Q + G+ S TNL +I + SL Sbjct: 453 VTQLFN----AGLVHDVADLYRLTKEQLIG------LERMGEKSATNLLAAIEASKQNSL 502 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIR+VGA+ A+ LA+++ + + + L+ VP +G+ +A Sbjct: 503 ERLLFGLGIRYVGAKAAQLLAEHFETMERLEKATK----------EELMAVPEIGEKMAD 552 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 +I+ F+ P + L + E S K +V TG L + R++ Sbjct: 553 SIIAFFSQPEAAELLHELRLYGVNMAYKGPKRAAEAPADSAFAGKTVVLTGKLASMSRNE 612 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A+E + +LG V+ +SR TDI+I G++ GSKLEKAQQLG++I +E +FL + + Sbjct: 613 AKEEIERLGGRVTGSVSRSTDIVIAGEDAGSKLEKAQQLGIEIWDESRFLQEISRGK 669 >gi|294635487|ref|ZP_06713972.1| DNA ligase, NAD-dependent [Edwardsiella tarda ATCC 23685] gi|291091145|gb|EFE23706.1| DNA ligase, NAD-dependent [Edwardsiella tarda ATCC 23685] Length = 675 Score = 569 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 252/718 (35%), Positives = 398/718 (55%), Gaps = 52/718 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ ++L L + +H+ YY +P + D+EYD L + A+ +P L + Sbjct: 1 MT-STIEQQLEQLRAALRHHEYQYYVLDEPQVTDAEYDRLMMQLKALESDYPQLVTA--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + +V H +P LSL+ +++ E R F R++ K D ++ F E Sbjct: 57 DSPSQRVGGAPLAAFGQVHHEVPMLSLDNVFDEESYRAFDKRLHERL--KSDAALTFCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190 K+DG +++ YE+G V AA RGDG +GED+++ ++ I IP L P+ IEVRGE Sbjct: 115 LKLDGLAVSLLYEQGVLVRAATRGDGSTGEDITSNVKTIRAIPLRLQGEDIPDRIEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V++ + F A+N+E G K +ANPRNAA+G LR+L+P R L F+ +G G Sbjct: 175 VFMPQAGFEAMNEEARRRGGKIFANPRNAAAGSLRQLDPRITARRPLTFYCYGAGLLEGG 234 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Y+ LQ+ + G PV+ V++ + +++YY + + R TL +DIDG+V KVD+ Sbjct: 235 TLPGSHYQCLQRFKSWGLPVSERVKRCHGSDEVLAYYRQTEQDRPTLGFDIDGVVIKVDD 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q+ LG AR+PRW + KF ++ T+L ++ Q+GRTG +TPVARLEPV + G + Sbjct: 295 IATQEALGFVARAPRWATAFKFPAQEQMTQLNGVEFQVGRTGAITPVARLEPVQVAGVTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I+ L +R+GD V+V+RAG+VIP+VV ++ ++R DA Sbjct: 355 SNATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVESQRPADATEI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CP+C S V R A RC+GGL C+AQ+ E LKHFVSR A ++EG+G Sbjct: 404 LFPTHCPVCGSEVERIEGE------AVARCSGGLICAAQRKESLKHFVSRRAMDVEGMGD 457 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + E + PAD++ L S K+ + G S L ++++ R+ Sbjct: 458 KVIEQLVERE----YVTTPADLYRL------SAGKLTGLERMGPKSANKLIAALDRSRST 507 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF+F+LGIR VG A +LA ++ S D SL VP VG+++ Sbjct: 508 TLARFLFALGIREVGEATAANLASHFGSLSALRGA----------DLESLKSVPEVGEVV 557 Query: 609 AQAIVEFYQNPRNICAVEALL-KEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQ 662 A+ I F N ++ L+ E+ + S K +V TG+L + Sbjct: 558 ARHIRHFLSEAHNCQVIDELISAEIGIHWPDVTPALQAAEIDSPFAGKTVVLTGSLSVLS 617 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R +A++ + LGA VS +S+KTD++I G+ GSKL KA LG+ +++E Q L +L + Sbjct: 618 RDEAKDRLVALGAKVSGSVSKKTDLVIAGEAAGSKLVKANTLGITVIDEAQLLQMLGE 675 >gi|240948595|ref|ZP_04752968.1| NAD-dependent DNA ligase LigA [Actinobacillus minor NM305] gi|240297103|gb|EER47674.1| NAD-dependent DNA ligase LigA [Actinobacillus minor NM305] Length = 679 Score = 569 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 257/704 (36%), Positives = 400/704 (56%), Gaps = 46/704 (6%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E+ +L ++ ++ Y+ P++ D+EYD L + P+L P+ P ++G Sbjct: 15 EIETLRNKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELI---TPDSPTQRVG 71 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + +VTH +P LSL+ ++ EDL F+ R+ + S+ F EPK+DG + Sbjct: 72 AKPLDGFSQVTHELPMLSLDNAFSDEDLDGFLRRMESYISVTPS-SLDFCCEPKLDGLAV 130 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKNDF 198 +I Y G AA RGDG +GED++A IR I IP + N P +EVRGEV++ + F Sbjct: 131 SILYVNGVLTQAATRGDGTTGEDITANIRTIRNIPLRLKTDNPPLRLEVRGEVFMPQKGF 190 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF---FVHGLGKTSEIFAKGQY 255 ALN + + G K +ANPRNAA+G LR+L+P + + G+ + + + Sbjct: 191 EALNQKALEKGEKTFANPRNAAAGSLRQLDPKITAQRPLMLNAYSIGIYDSDDELPNTHF 250 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ ++ LG PVNN +R ++ +Y ++++ R TL YDIDG V KV++ +LQ+QL Sbjct: 251 ERLQWLKSLGIPVNNEIRLEKGRENLLKFYADIQTKRPTLGYDIDGTVLKVNDIALQEQL 310 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLHN Sbjct: 311 GFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHN 370 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+ L I +GD V+++RAG+VIP+++ I+ R +A+ +FP+ CP Sbjct: 371 GDEIERL-----------GIAIGDTVIIRRAGDVIPQIIGIVAERRPENAKKITFPTACP 419 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 IC S VVR A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 420 ICGSAVVRVEGE------AVARCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLIEQLM 473 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + E + PAD+F L + + + G+ S N +SI K +N +L RF+F Sbjct: 474 ERE----LVHTPADLFKLDQ------VTLMRLERMGEKSAQNALNSIEKAKNTTLPRFLF 523 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG A +LA ++ S + + L V VG+++A IV F Sbjct: 524 ALGIRDVGEATALNLANHFGSLEAIRTAT----------FEQLQEVQDVGEVVANRIVRF 573 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 +Q P N+ VE L+++ + + + +++K +V TGTL + R +A+ + LG Sbjct: 574 WQEPHNVEVVEDLIQQGVVWQNIEQVEIADNPLKDKNVVLTGTLSVLTRDQAKALLQGLG 633 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 VS +S KTD +I G+ GSKL KAQ+LGVK+++E+ FL ++ Sbjct: 634 CKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLSEQDFLEIV 677 >gi|165976722|ref|YP_001652315.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190359223|sp|B0BQN6|DNLJ_ACTPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|165876823|gb|ABY69871.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 682 Score = 569 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 251/708 (35%), Positives = 400/708 (56%), Gaps = 46/708 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +L +L Q++ ++ Y+ P++ D+EYD L + P+ + + P ++ Sbjct: 16 AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + +VTH IP LSL+ ++ E+L F+ R+ + + ++ F EPK+DG Sbjct: 73 GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKND 197 ++I Y G AA RGDG +GED+++ IR + IP N P +EVRGEV++ + Sbjct: 132 VSILYVDGVLSQAATRGDGTTGEDITSNIRTVRNIPLKLNMDNPPARLEVRGEVFMPQKG 191 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGKTSEIFAKGQ 254 F LN+ + G K +ANPRNAA+G LR+L+P + N + G+ ++ + Sbjct: 192 FETLNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATH 251 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y ++++ R TL YDIDG V KV++ LQ+Q Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V +++ R +A+ FP+ C Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E + PAD+F L+ T + + G S N +SI K +N +L RF+ Sbjct: 475 MERE----LVHTPADLFKLE------HTTLMRLERMGGKSAQNALNSIEKAKNTTLARFL 524 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ + + L V VG+++A IV Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574 Query: 615 FYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+Q P N+ VE L+ + + + ++ K +V TGTL ++ R +A+ + Sbjct: 575 FWQEPHNVTVVEDLISQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 G VS +S KTD +I G+ GSKL KAQ+LGVK++ E++F+ L + Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIALTGEN 682 >gi|156973609|ref|YP_001444516.1| NAD-dependent DNA ligase LigA [Vibrio harveyi ATCC BAA-1116] gi|166216277|sp|A7MT54|DNLJ_VIBHB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|156525203|gb|ABU70289.1| hypothetical protein VIBHAR_01312 [Vibrio harveyi ATCC BAA-1116] Length = 670 Score = 569 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 254/713 (35%), Positives = 391/713 (54%), Gaps = 48/713 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E + L L++ + YH YY P I D+EYD + R I P+L Sbjct: 1 MS-ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPELVTV--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG+ +VTH +P LSL+ ++ +L F R + E Sbjct: 57 DSPSLRVGGQPLSEFSQVTHEVPMLSLDNAFDDAELDGFHKRAQDRV--VGHTIKQYCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 PK+DG +++ YE G V AA RGDG +GE+++ +R I IP L P +EVRGE Sbjct: 115 PKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTISAIPLKLQGKGWPTRLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249 V++ K F LN+ G K + NPRNAA+G LR+L+ +R L+F+ + +G Sbjct: 175 VFMPKAGFDKLNENARKKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVEGA 234 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 A YE +++ G P+ ++ ++ + +YY ++ + R L Y+IDG+V KVD+ Sbjct: 235 TLANSHYERFLQIKSWGLPMCPETKRVDSLEEVKAYYQDILTRREALAYEIDGVVIKVDD 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 ++Q++LG AR+PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEP+ +GG + Sbjct: 295 IAIQERLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPIFVGGVTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I+ L + VGD+V+++RAG+VIP+VV +I R A+ Sbjct: 355 SNATLHNADEIERLQ-----------VMVGDQVVIRRAGDVIPQVVSVIKERRPETAREI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++GLG Sbjct: 404 LFPDACPVCGSHVERIEGE------AVTRCTGGLVCQAQRKEALKHFVSRKALDVDGLGD 457 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E + PAD+F L S + + G S TN+ +++ K + Sbjct: 458 KVIEQLVDRE----MVETPADLFKL------SAGVLTVLERMGPKSATNVVNALEKSKLT 507 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF++SLGIR VG A +LA+Y+ + Q LI V +G I+ Sbjct: 508 TLPRFLYSLGIREVGEATAANLAQYFKNLDAIQQATE----------EQLIEVQDIGVIV 557 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A+ I F+ +N V+ LL + P I ++ V +E K +V TGTL ++ R +A Sbjct: 558 AKHITTFFGEEKNQAVVQDLLAQGINWPEIAAPQEGVELPLEGKTVVLTGTLSQLGRSEA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + LGA V+ +S+KTDI+ G+N GSKL KAQ+LG++I E+ L L++ Sbjct: 618 KEALQNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIQTEQDLLNLMK 670 >gi|307246220|ref|ZP_07528301.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255203|ref|ZP_07537019.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259638|ref|ZP_07541362.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852829|gb|EFM85053.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861831|gb|EFM93809.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866283|gb|EFM98147.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 682 Score = 569 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 252/708 (35%), Positives = 401/708 (56%), Gaps = 46/708 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +L +L Q++ ++ Y+ P++ D+EYD L + P+ + + P ++ Sbjct: 16 AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + +VTH IP LSL+ ++ E+L F+ R+ + + ++ F EPK+DG Sbjct: 73 GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKND 197 ++I Y G AA RGDG +GED+++ IR + IP N P +EVRGEV++ + Sbjct: 132 VSILYVDGVLSQAATRGDGTTGEDITSNIRTVRNIPLKLNMDNPPARLEVRGEVFMPQKG 191 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGKTSEIFAKGQ 254 F ALN+ + G K +ANPRNAA+G LR+L+P + N + G+ ++ + Sbjct: 192 FEALNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPVTH 251 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y ++++ R TL YDIDG V KV++ LQ+Q Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGAVLKVNDIGLQEQ 311 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V +++ R +A+ FP+ C Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E + PAD+F L+ T + + G S N +SI K +N +L RF+ Sbjct: 475 MERE----LVHTPADLFKLE------HTTLMRLERMGGKSAQNALNSIEKAKNTTLARFL 524 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ + + L V VG+++A IV Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574 Query: 615 FYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+Q P N+ VE L+ + + + ++ K +V TGTL ++ R +A+ + Sbjct: 575 FWQEPHNVTVVEDLISQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 G VS +S KTD +I G+ GSKL KAQ+LGVK++ E++F+ L + Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIALTGEN 682 >gi|254785950|ref|YP_003073379.1| DNA ligase, NAD-dependent [Teredinibacter turnerae T7901] gi|237685872|gb|ACR13136.1| DNA ligase, NAD-dependent [Teredinibacter turnerae T7901] Length = 676 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 252/708 (35%), Positives = 387/708 (54%), Gaps = 45/708 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E + + L Q +++H+ YY +P I D+EYD L + FP L E + P Sbjct: 9 EAVMRRCNELHQLLNHHNRQYYLLDEPEIPDAEYDRLFHELKTLEAEFPQL---ETADSP 65 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G E V H +P LSL+ ++ ED+R F RI D + + EPK Sbjct: 66 TQRVGAEPLKGFSSVQHEVPMLSLDNAFSDEDMRAFEKRIQDRL--ASDAELEYACEPKF 123 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193 DG +++ Y G+ A RGDG +GED++ +R I ++P LS + P + EVRGEV + Sbjct: 124 DGIAVSLLYRDGRLQRGATRGDGATGEDITQNVRTIGSVPLKLSGDNVPAVFEVRGEVVM 183 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + F LN G + + NPRNAA+G LR+L+P+ R L FF + +G Sbjct: 184 PRAGFAKLNAAAQERGDRLFVNPRNAAAGALRQLDPSITAKRPLVFFAYSVGYVEGELPP 243 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 + L + LGF V A+ G ++YY ++ R+ L YDIDG+V+KV+++ LQ Sbjct: 244 THFGTLDLLEKLGFVVAGERALAHGAGGCLAYYRDLGEKRADLGYDIDGIVFKVNDYGLQ 303 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG +R+PRW I+HKF ++ T L D++ Q+GRTG +TPVARLEPV +GG ++NAT Sbjct: 304 NRLGFVSRAPRWAIAHKFPAQEEMTVLNDVEFQVGRTGAVTPVARLEPVFVGGVTVSNAT 363 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I+ L +++GD+V+V+RAG+VIP++V ++++ R A+ FP+ Sbjct: 364 LHNRDEIERL-----------GVKIGDQVVVRRAGDVIPQIVSVVLSARPQHAKEIVFPA 412 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S+V A RCTGGL C+AQ+ E +KHFVSR A +IEGLG + ++ Sbjct: 413 NCPVCGSQVEVLEGE------AVARCTGGLVCAAQRKEAIKHFVSRTAMDIEGLGDKLVE 466 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 I ADI+ L+ + N+ GD S N+ D+I K ++ +L R Sbjct: 467 QLV----GLGHIEHIADIYRLEHE------VLANMERMGDKSAQNVIDAIEKSKSTTLPR 516 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+F+LGIR VG AR++A+++ +N D +L+ V VG I+A I Sbjct: 517 FLFALGIREVGQATARNIAQHFGMLKNLMDA----------DQEALVAVDDVGPIVAHHI 566 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVT 671 +F+Q N + L + S ++ K V TGTL+ + R +A+E + Sbjct: 567 FDFFQQQGNRAQIALLQEAGVHWPESAPVAAESLPLDGKTYVLTGTLETLSRDEAKEKLL 626 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA V+ +S+KTD ++ G GSKL KA+ LG+++++E F+ LL Sbjct: 627 ALGAKVTGSVSKKTDCVVAGPGAGSKLAKAESLGIEVLDEAAFVALLD 674 >gi|7673996|sp|O87703|DNLJ_BACST RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|3688229|emb|CAA09732.1| DNA ligase [Geobacillus stearothermophilus] Length = 670 Score = 568 bits (1464), Expect = e-159, Method: Composition-based stats. Identities = 254/717 (35%), Positives = 392/717 (54%), Gaps = 54/717 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + +QA + + L + ++ + YY +P + D+EYD L + AI +P+L S Sbjct: 1 MDRQQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTS--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +IGG + KV H +P +SL + DLR F R+ ++ + E Sbjct: 58 DSPTQRIGGPPLEAFRKVAHRVPMMSLANAFGEGDLRDFDRRVR-----QEVGEAAYVCE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG +GED++ ++ I ++P L + +E RGE Sbjct: 113 LKIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLKEPVS--LEARGEA 170 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 ++ K FL LN+E A G + +ANPRNAA+G LR+L+P +R L+ FV+GL + Sbjct: 171 FMPKASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADAEALG 230 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L ++ LGF VN R+ ++++ +E R LPY+IDG+V KVD F+ Sbjct: 231 IASHSEALDYLQALGFKVNPERRRCANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDSFA 290 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+ LG A+SPRW I++KF ++ T L+ I++ +GRTG++TP A LEPV + G + Sbjct: 291 QQRALGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQR 350 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED+I+ +DIR+GD V++K+AG++IP+VV ++V+ R D PF+ Sbjct: 351 ATLHNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFAM 399 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ ERL HF SR A NIEGLG++ Sbjct: 400 PTHCPECESELVRLEGE------VALRCLNP-NCPAQLRERLIHFASRAAMNIEGLGEKV 452 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A +R AD++ L + Q + G+ S NL +I + SL Sbjct: 453 VTQLFN----AGLVRDVADLYCLTKEQLVG------LERMGEKSAANLLAAIEASKQNSL 502 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIR+VGA+ A+ LA+++ + + + L+ VP +G+ +A Sbjct: 503 ERLLFGLGIRYVGAKAAQLLAEHFETMERLERATK----------EELMAVPEIGEKMAD 552 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 AI F+ P ++ L + E S K +V TG L + R++ Sbjct: 553 AITAFFAQPEATELLQELRAYGVNMAYKGPKRSAEAPADSAFAGKTVVLTGKLASMSRNE 612 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A+E + +LG V+ +SR TD++I G++ GSKLEKAQQLG++I +E +FL + + Sbjct: 613 AKEQIERLGGRVTGSVSRSTDLVIAGEDAGSKLEKAQQLGIEIWDESRFLQEINRGK 669 >gi|261822799|ref|YP_003260905.1| NAD-dependent DNA ligase LigA [Pectobacterium wasabiae WPP163] gi|261606812|gb|ACX89298.1| DNA ligase, NAD-dependent [Pectobacterium wasabiae WPP163] Length = 681 Score = 568 bits (1464), Expect = e-159, Method: Composition-based stats. Identities = 254/727 (34%), Positives = 397/727 (54%), Gaps = 57/727 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 MKK + ++ L + + +H+ Y+ P I DSEYD L + A+ Sbjct: 1 MKKEPAE------VNTVALRVAELRRVLRHHEYKYHVEDAPEIPDSEYDKLMQELKALEA 54 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 P+L S + P ++G + +V H +P LSL+ +++ E F RI Sbjct: 55 DHPELVTS---DSPTQRVGAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRL-- 109 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 K+ + + F E K+DG +++ YE G V AA RGDG +GE++++ IR + IP L Sbjct: 110 KNGDDLTFCCELKLDGLAVSLLYEDGVLVQAATRGDGTTGENITSNIRTVGAIPLRLEGE 169 Query: 181 I-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238 P +EVRGEV++ F LN+E G K +ANPRNAA+G LR+L+P R L F Sbjct: 170 NIPRRVEVRGEVFMKHGGFEKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTF 229 Query: 239 FVHGLGK-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 F +G+G +E L + + G PV++ ++ ++ +Y +++ RS L + Sbjct: 230 FCYGVGLLEGGELPASHWERLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSELGF 289 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+V KVD +LQ++LG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVAR Sbjct: 290 DIDGVVVKVDSLALQERLGFVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVAR 349 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 LEPV + G +++NATLHN D I+ L +++GDRV+V+RAG+VIP++V I+ Sbjct: 350 LEPVAVAGVIVSNATLHNADEIERL-----------GLQIGDRVIVRRAGDVIPQIVGIV 398 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 +ER QP FP CP+C S V R A RCTGGL C AQ+ E LKHFVS Sbjct: 399 ESERPETVQPIVFPVACPVCGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVS 452 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R A ++EG+G + +D + E ++ PAD+F L S + + G S N Sbjct: 453 RRALDVEGMGDKIIDQLVEKE----YVKTPADLFRL------SAGSMTGLDRMGPKSAMN 502 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 + +++ K ++ +L RF+++LGIR VG A +LA ++ S + D + Sbjct: 503 VVNALEKAKSTTLARFLYALGIRDVGESTAANLAAHFGSLEALFAA----------DEDA 552 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI------GRHEKNVSSEIENKK 651 L+ VP VG I+A + F + N + L +I + + + S K Sbjct: 553 LLAVPDVGKIVAAHVRHFLEEEHNQTVIRELTDPAGINIHWPEVQVVNAEEIDSPFAGKT 612 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 +V TG+L + R +A++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E Sbjct: 613 VVLTGSLSILSRDEAKDRLTALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIAVIDE 672 Query: 712 EQFLFLL 718 + + LL Sbjct: 673 AEMIRLL 679 >gi|259907817|ref|YP_002648173.1| NAD-dependent DNA ligase LigA [Erwinia pyrifoliae Ep1/96] gi|224963439|emb|CAX54927.1| DNA ligase [Erwinia pyrifoliae Ep1/96] gi|283477688|emb|CAY73604.1| DNA ligase [Erwinia pyrifoliae DSM 12163] Length = 678 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 238/715 (33%), Positives = 398/715 (55%), Gaps = 51/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E + +++ L + +++ Y+ P + D+EYD L + P+L S + Sbjct: 1 MESVQDKITHLRTLLRHYEYQYHVLDAPAVPDAEYDRLMGELRDLEAQHPELLTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G +V H +P LSL+ ++ E F R+ + DD I F E K Sbjct: 58 PTQRVGAAPLSVFEQVRHEVPMLSLDNAFDEESYLAFNKRVQDRLKSTDD--ITFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YEKG+ V AA RGDG +GE+++A +R I IP LS + PE +EVRGEV+ Sbjct: 116 LDGLAVSLLYEKGELVRAATRGDGTTGENITANVRTIRAIPLRLSGDNIPERLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + F +N++ + G+K +ANPRNAA+G LR+L+P R L FF +GLG Sbjct: 176 MPLVGFEQMNEQARSSGQKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGEM 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + LQ+ + G PV++ VR ++ ++ +Y+++++ R TL +DIDG+V KVD + Sbjct: 236 PRSHRARLQRFKAWGLPVSDRVRLCHSPAEVLDFYHQVEAARPTLGFDIDGVVIKVDSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVLVAGVMVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +++GDRV+++RAG+VIP+V+ ++ +A+ +F Sbjct: 356 ATLHNADEIERL-----------GLKIGDRVVIRRAGDVIPQVMSVVETG--DNAREIAF 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R RCTGGL C AQ+ LKHFVSR A +I+G+G++ Sbjct: 403 PTRCPVCGSDVERVEGE------VVARCTGGLICGAQRKGALKHFVSRRALDIDGMGEKI 456 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D E ++ PA++F L K+ + G S N+ +++ K + + Sbjct: 457 IDQLVDKE----YVKNPAELFELTA------GKLTGLDRMGPKSAQNVVNALVKAKQTTF 506 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGI VG A +LA ++ + D +L+ V VG ++A Sbjct: 507 ARFLYALGISEVGEATAANLAAHFGTLDALMAA----------DLDALMAVQDVGKVVAS 556 Query: 611 AIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + F N+ + L+ + + + + + S K +V TG+L + R +A Sbjct: 557 HVRNFLDEESNLEIIRLLVDKAGVNWPQVMVVKAEEIDSPFAGKTVVLTGSLSILSRDEA 616 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 ++ + LGA VS +S+KTD+++ G+ GSKL KA++LG+ +++E++ + LL + Sbjct: 617 KDRLQALGAKVSGSVSKKTDLVVAGEAAGSKLAKARELGIDVIDEQEMIRLLGEK 671 >gi|253701546|ref|YP_003022735.1| DNA ligase, NAD-dependent [Geobacter sp. M21] gi|251776396|gb|ACT18977.1| DNA ligase, NAD-dependent [Geobacter sp. M21] Length = 668 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 254/708 (35%), Positives = 369/708 (52%), Gaps = 44/708 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + A + + L EI H+ YY+ P I D+EYDAL R + + PDLA P Sbjct: 1 MDKTAAAQRIKWLSSEIERHNRLYYEQDMPEITDAEYDALFRELKELEASHPDLAL---P 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG +V H+ P LSLE + +D+ F R+ RF I + E Sbjct: 58 DSPTGRVGGRPVAKFTQVRHTTPMLSLENAFTDKDIVDFDDRVKRFLGLSGQAEIGYVCE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG + + Y +G + RGDG GE+V+ ++ I IP + P ++ VRGE Sbjct: 118 PKMDGVAVELVYREGLLAIGSTRGDGVVGEEVTQNLKTIKDIPLRLQTEEPPRLLTVRGE 177 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VY+ F N E G P+ANPRNAA+G LR+L+ R L+ F + G+ + Sbjct: 178 VYLPLEPFRKFNQEREEAGEPPFANPRNAAAGSLRQLDSKITAKRPLSIFCYAPGEVDGV 237 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q L + PVN + + G++ YY+EM R LPY+IDG+V KVD F Sbjct: 238 AFDSQSHFLSTIPTWRIPVNPLTKLVSGVQGVLDYYHEMMEKRDDLPYEIDGVVVKVDRF 297 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ+ LGE++RSPRW I+ KF +QA+T + DI Q+GRTG++TPVA LEPVN+ G +++ Sbjct: 298 SLQRDLGEKSRSPRWAIAWKFPPRQATTVVNDIVPQVGRTGVITPVAHLEPVNVSGVMVS 357 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN + ++ +DIR GD V+V+RAG+VIP VV ++V +R Sbjct: 358 RATLHNWEEMER-----------KDIRRGDTVVVERAGDVIPAVVQVLVEKRQGSETLLP 406 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP+C VVR + GL C AQ LER+KHF +R A +I+GLG++ Sbjct: 407 VPQACPVCGGEVVRIPGEVAVR-------CVGLNCPAQALERVKHFAARRAMDIDGLGEK 459 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ + IR ADI+ L G NL +SI + Sbjct: 460 FIEQLLNLK----LIRNVADIYRLTEEDFMRF------ERMGKKLAENLLNSIAASKERE 509 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R IF+LGIRHVG A+ LA + S +N A L + VG +A Sbjct: 510 LSRLIFALGIRHVGEHTAKLLAGAFGSMENLAAASE----------EELTSIREVGPQVA 559 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +I +F+++ N+ + L + + EK V K VFTG L+K R +A++ Sbjct: 560 ASIADFFKSEENLEVLRELKEHGV-NPKAEEKRVGGRFTGKTFVFTGALEKFTRDEAKKM 618 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V G + +S+KTD ++ G + GSKLEKAQQLGV++++E+ FL L Sbjct: 619 VELEGGHAAGSVSKKTDYVVAGADAGSKLEKAQQLGVRVLSEDDFLEL 666 >gi|307257368|ref|ZP_07539138.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864218|gb|EFM96131.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 682 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 253/708 (35%), Positives = 401/708 (56%), Gaps = 46/708 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +L +L Q++ ++ Y+ P++ D+EYD L + P+ + + P ++ Sbjct: 16 AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + +VTH IP LSL+ ++ E+L F+ R+ + + ++ F EPK+DG Sbjct: 73 GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKND 197 ++I Y G AA RGDG +GED+++ IR I IP N P +EVRGEV++ + Sbjct: 132 VSILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKG 191 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGKTSEIFAKGQ 254 F ALN+ + G K +ANPRNAA+G LR+L+P + N + G+ ++ + Sbjct: 192 FEALNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPVTH 251 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y ++++ R TL YDIDG V KV++ LQ+Q Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGAVLKVNDIGLQEQ 311 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V +++ R +A+ FP+ C Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E + PAD+F L+ T + + G S N +SI K +N +L RF+ Sbjct: 475 MERE----LVHTPADLFKLE------HTTLMRLERMGGKSAQNALNSIEKAKNTTLARFL 524 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ + + L V VG+++A IV Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574 Query: 615 FYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+Q P N+ VE L+ + + + ++ K +V TGTL ++ R +A+ + Sbjct: 575 FWQEPHNVAVVEDLISQGVHWQNVIQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 G VS +S KTD +I G+ GSKL KAQ+LGVK++ E++F+ L + Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLVKAQELGVKVLTEQEFIALTGEN 682 >gi|261418603|ref|YP_003252285.1| NAD-dependent DNA ligase LigA [Geobacillus sp. Y412MC61] gi|319765418|ref|YP_004130919.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC52] gi|261375060|gb|ACX77803.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC61] gi|317110284|gb|ADU92776.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC52] Length = 670 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 257/717 (35%), Positives = 395/717 (55%), Gaps = 54/717 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + +QA + + L + + + YY +P + D+EYD L + AI +P+L S Sbjct: 1 MDRQQAERRAAELRELLHRYGYEYYVLDRPSVPDAEYDRLMQELMAIEEQYPELKTS--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +IGG + KVTH +P +SL ++ DLR F R+ ++ + E Sbjct: 58 DSPTQRIGGPPLEAFRKVTHVVPMMSLANAFDEGDLRDFDRRVR-----QEVGEAAYVCE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG +GED++ +R I ++P L + +E RGE Sbjct: 113 LKIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLRTIRSLPLRLKEPVS--LEARGEA 170 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 ++ K FL LN+E A G + +ANPRNAA+G LR+L+P +R L+ +V+GL E+ Sbjct: 171 FMPKASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLYVYGLANAEELG 230 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + E L ++ LGF VN R+ ++++ NE R LPY+IDG+V KVD F+ Sbjct: 231 IESHSEALHYLQALGFKVNPERRRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFA 290 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG A+SPRW I++KF ++ T L+ I++ +GRTG++TP A LEPV + G + Sbjct: 291 QQRELGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQR 350 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED+I+ +DIR+GD V++K+AG++IP+VV ++V+ R D PF Sbjct: 351 ATLHNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFVM 399 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ ERL HF SR A NIEGLG++ Sbjct: 400 PTHCPECESELVRLDGE------VALRCLNPK-CPAQLRERLIHFASRAAMNIEGLGEKV 452 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A + AD++ L + Q + G+ S TNL +I + SL Sbjct: 453 VTQLFN----AGLVHDVADLYRLTKEQLIG------LERMGEKSATNLLAAIEASKQNSL 502 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIR+VGA+ A+ LA+++ + + + L+ VP +G+ +A Sbjct: 503 ERLLFGLGIRYVGAKAAQLLAEHFETMERLEKATK----------EELMAVPEIGEKMAD 552 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 +I+ F+ P + L + E S K +V TG L + R++ Sbjct: 553 SIIAFFSQPEAAELLHELRLYGVNMAYKGPKRAAEAPADSAFAGKTVVLTGKLASMSRNE 612 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A+E + +LG V+ +SR TDI+I G++ GSKLEKAQQLG++I +E +FL + + Sbjct: 613 AKEEIERLGGRVTGSVSRSTDIVIAGEDAGSKLEKAQQLGIEIWDESRFLQEISRGK 669 >gi|46143448|ref|ZP_00135242.2| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208768|ref|YP_001053993.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae L20] gi|166215385|sp|A3N1V2|DNLJ_ACTP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|126097560|gb|ABN74388.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 683 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 253/708 (35%), Positives = 399/708 (56%), Gaps = 46/708 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +L +L Q++ ++ Y+ P++ D+EYD L + P+ + P ++ Sbjct: 17 AQLEALRQKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITV---DSPTQRV 73 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + +VTH IP LSL+ ++ E+L F+ R+ + + ++ F EPK+DG Sbjct: 74 GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 132 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKND 197 ++I Y G AA RGDG +GED+++ IR I IP N P +EVRGEV++ + Sbjct: 133 VSILYVDGVLSQAATRGDGSTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKG 192 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGKTSEIFAKGQ 254 F LN+ + G K +ANPRNAA+G LR+L+P + N + G+ ++ + Sbjct: 193 FEELNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATH 252 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y +++ R TL YDIDG V KV++ LQ+Q Sbjct: 253 FERLQWLKSIGIPVNNEIRLATGREQLLAFYANIQAKRPTLGYDIDGTVLKVNDIGLQEQ 312 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 313 LGFISRSPRWAIAYKFPSQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 372 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V ++++ R +A+ FP+ C Sbjct: 373 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMDRRPENAKKIEFPTAC 421 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 422 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 475 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E + PAD+F L T + + G+ S N +SI K +N +L RF+ Sbjct: 476 MERE----LVHTPADLFKL------DHTTLMRLERMGEKSAQNALNSIEKAKNTTLARFL 525 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ + + L V VG+++A IV Sbjct: 526 FALGIRDVGEATAQNLANHFHNLAAIRTAT----------FEQLQAVQDVGEVVANRIVR 575 Query: 615 FYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+Q P N+ VE L+ + + + ++ K +V TGTL ++ R +A+ + Sbjct: 576 FWQEPHNVAVVEDLISQGVHWQDVIQVEIADNPLKGKNVVLTGTLTQLTRDQAKALLQSF 635 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 G VS +S KTD +I G+ GSKL KAQ+LGVKI+ E++F+ L + Sbjct: 636 GCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKILTEQEFIALTGEN 683 >gi|326387612|ref|ZP_08209218.1| DNA ligase, NAD-dependent [Novosphingobium nitrogenifigens DSM 19370] gi|326207658|gb|EGD58469.1| DNA ligase, NAD-dependent [Novosphingobium nitrogenifigens DSM 19370] Length = 687 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 281/712 (39%), Positives = 410/712 (57%), Gaps = 33/712 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+A++ A EL L ++I+YHD Y+ P I D+EYDAL RR I AFP L R+ Sbjct: 3 IDAMTEADAANELMRLARQIAYHDRLYHTLDTPEIADAEYDALVRRNAEIEAAFPHLIRA 62 Query: 69 EDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + P K+G ++ S L KVTH + +SL+ + E++ +F R+ RF + + Sbjct: 63 ---DSPSRKVGHDVAASPLSKVTHEVRMMSLDNAFTDEEVEEFAARVRRFLALPAEAEVA 119 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 T E KIDG ++RYE G+ V AA RGDG GEDV+A + IP IP+ LS ++PE+ E+ Sbjct: 120 MTAEDKIDGLSCSLRYEHGRLVRAATRGDGQVGEDVTANVAFIPDIPQHLSGDVPEVFEI 179 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY++K DF ALN G K +ANPRNAA+G LR+ + + +R L F HG G Sbjct: 180 RGEVYMAKADFAALNVAQEEKGEKRFANPRNAAAGSLRQKDASVTASRPLRFLAHGWGAH 239 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 S + A+ QY+++Q + G PV+ + + T ++++Y +++ R LPYDIDG+VYKV Sbjct: 240 SGLPAQTQYDVMQVIAGWGVPVSPLLVRCATTADMLAHYRAIQAQRPDLPYDIDGVVYKV 299 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D Q++LG A++PRW ++HKF ++A T + ID+Q+GRTG LTPV RL PV +GG Sbjct: 300 DRLDWQERLGFVAKAPRWGMAHKFPAERAETVVEAIDVQVGRTGKLTPVGRLRPVLVGGV 359 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +TN TLHN D I L +RVGDRV+++RAG+VIP+V + R + Sbjct: 360 TVTNVTLHNRDEIARL-----------GVRVGDRVVLQRAGDVIPQV--VDNLTREEARE 406 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + FP CP C S V + RCTGGL C AQ+ ERLKHFVSR A +I+GL Sbjct: 407 AYVFPDHCPECGSEAVAEEGE------VDVRCTGGLICPAQRTERLKHFVSRAALDIDGL 460 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++ + FF + PADIF L+ R+ I G+ D SV NL +I RR Sbjct: 461 GEKTIVEFF----ALGWLESPADIFRLKNRRA----DILGREGWKDKSVENLLMAIEARR 512 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 R +F+LGIRHVG AR L K +++ + A + D L+ + VG Sbjct: 513 APDAARLLFALGIRHVGQVTARDLMKRFVTLPDLRAVAERAHAGDEDARAELLGIDGVGP 572 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++ +A+ EF+ P N + LL E+SP E S + K +VFTG L+ + R +A Sbjct: 573 VVVEALGEFFHEPHNRAVWDDLLSELSPPPYIVETRA-SVVAGKTVVFTGKLETMSRDEA 631 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA + +S KTD+++ G GSKL++A LG+++++E + ++ Sbjct: 632 KAQAEALGARAAGSVSAKTDLVVAGPGAGSKLKQAAALGIEVIDEAAWAEIV 683 >gi|149374973|ref|ZP_01892746.1| DNA ligase, NAD-dependent [Marinobacter algicola DG893] gi|149360862|gb|EDM49313.1| DNA ligase, NAD-dependent [Marinobacter algicola DG893] Length = 676 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 249/716 (34%), Positives = 387/716 (54%), Gaps = 47/716 (6%) Query: 12 LSIE--QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 ++ L I+ H+ YY P + D+EYD L R + +PD+ Sbjct: 1 MTKASPDVISRAGELRDIITEHNYQYYVLDDPRVPDAEYDRLFRELQDLETQYPDIV--- 57 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++GG + + +V H IP LSL+ ++ E+LR F R+ K + I + Sbjct: 58 TPDTPTRRVGGSVETTFEEVVHRIPMLSLDNAFSDEELRDFDRRVKDRL--KTGDDIEYV 115 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVR 188 EPK+DG +++ YE G AA RGDG++GED++A IR IP++P L + PE++EVR Sbjct: 116 CEPKLDGLAVSLHYESGVLTRAATRGDGYTGEDITANIRTIPSVPLRLRGDKVPELVEVR 175 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KT 246 GEVY+ + F ALN + G K + NPRNAA+G LR+ PT R L + + + Sbjct: 176 GEVYMPREGFEALNRRLANKGEKTFVNPRNAAAGSLRQKKPTVTARRPLELCAYSVALED 235 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + +E LQ++ GF +N +R+A + YNE+ R++LPY+IDG+V+KV Sbjct: 236 ESLLPATHWEGLQQVSAWGFRINPEMRRATGAEDCLQAYNELMGKRASLPYEIDGIVFKV 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQ+QLG +R+PRW I+ KF ++ T + D++ Q+GRTG +TPVARL+PV +GG Sbjct: 296 NSLALQQQLGFVSRAPRWAIAQKFPAQEELTVIEDVEFQVGRTGAITPVARLKPVFVGGV 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++NATLHN D I+ L D R+GD V V+RAG+VIP+VV ++ R +A+ Sbjct: 356 TVSNATLHNMDEIRRL-----------DARIGDTVFVRRAGDVIPQVVKVVAERRPANAR 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+CQS +V+ RC+GGL C AQ+ E ++H+ SR A +IEGL Sbjct: 405 EVELPDACPVCQSDIVQIEGE------VVARCSGGLFCPAQRKEAIRHYASRKALDIEGL 458 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D E + AD++ L++ T + G+ S NL D+I++ R Sbjct: 459 GDKWIDILVDRE----LVNTVADLYLLKKADLTG------LERMGEKSAGNLIDAIDRSR 508 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 L +F+++LGIR VG A+ LA Y+ + ++ ++ D +L VP VG Sbjct: 509 KPVLWKFLYALGIREVGEATAKGLASYFGTLESISEA----------DEDALQSVPDVGP 558 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I+A I F+ N ++AL ++ + V TG+L + R A Sbjct: 559 IVAGHIRSFFDQTHNQETIQALKDAGVQWQAEEITASQKPLKGETWVLTGSLSGMTRDDA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + + LGA V+ +S KT ++ G+ GSKL KA+ LGV +M+E F+ L + Sbjct: 619 KSKLESLGAKVAGSVSGKTSCVVAGEAAGSKLTKAENLGVPVMDESAFVDFLATHG 674 >gi|163802586|ref|ZP_02196478.1| NAD-dependent DNA ligase LigA [Vibrio sp. AND4] gi|159173669|gb|EDP58488.1| NAD-dependent DNA ligase LigA [Vibrio sp. AND4] Length = 670 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 255/713 (35%), Positives = 390/713 (54%), Gaps = 48/713 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E ++L L++ + YH YY P I D+EYD + R I PDL Sbjct: 1 MS-ESVLQQLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPDLVTV--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG+ +VTH +P LSL+ ++ +L F R N + E Sbjct: 57 DSPSQRVGGQPLSEFSQVTHEVPMLSLDNAFDDAELDGFHKRAQDRV--VAHNIKQYCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190 PK+DG +++ YE G V AA RGDG +GE+++ +R I IP L N P +EVRGE Sbjct: 115 PKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTISAIPLKLQGENWPTRLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249 V++ K F LN+ G K + NPRNAA+G LR+L+ +R L+F+ + +G Sbjct: 175 VFMPKAGFDKLNELARKKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVEGA 234 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 A YE +++ G P+ R + + +YY ++ R L Y+IDG+V KVD+ Sbjct: 235 VLANSHYERFLQIKSWGLPMCPETRCVDNLEEVKAYYRDILVRREALAYEIDGVVIKVDD 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +Q++LG AR+PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEP+ +GG + Sbjct: 295 IVIQERLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPIFVGGVTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I+ L + VGD+V+++RAG+VIP+VV +I R A+ Sbjct: 355 SNATLHNADEIERLQ-----------VMVGDQVVIRRAGDVIPQVVSVIKERRPETAREI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++GLG Sbjct: 404 IFPNACPVCGSHVERIEGE------AVTRCTGGLVCQAQRKEALKHFVSRKALDVDGLGD 457 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E + PAD+F L S + + G S TN+ +++ K + Sbjct: 458 KVIEQLVDRE----MVETPADLFKL------SAGVLTVLDRMGPKSATNVVNALEKSKLT 507 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF++SLGIR VG A +LA+Y+ + Q L+ V +G ++ Sbjct: 508 TLPRFLYSLGIREVGEATAANLAQYFKNLDAIQQATE----------EQLVDVQDIGVVV 557 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A+ I F+ +N V+ LL + P I ++ +E K +V TGTL ++ R +A Sbjct: 558 AKHITTFFSEEKNQAVVQDLLAQGINWPDIASPQEGAERPLEGKTVVLTGTLSQLGRSEA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + LGA V+ +S+KTDI+ G+N GSKL KAQ+LG++I E+ L L++ Sbjct: 618 KEALQNLGAKVTGSVSKKTDILFAGENAGSKLTKAQELGIEIQTEQDLLNLMK 670 >gi|197117724|ref|YP_002138151.1| NAD-dependent DNA ligase [Geobacter bemidjiensis Bem] gi|254781337|sp|B5EIJ0|DNLJ_GEOBB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|197087084|gb|ACH38355.1| DNA ligase, NAD-dependent [Geobacter bemidjiensis Bem] Length = 668 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 256/710 (36%), Positives = 372/710 (52%), Gaps = 44/710 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + A + + L EI H+ YY+ P I D+EYDAL R + ++PDLA P Sbjct: 1 MDKTAAAQRIKWLSSEIERHNRLYYEQDMPEITDAEYDALFRELKELEASYPDLAL---P 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG +V H+ P LSLE + +D+ F R+ RF I + E Sbjct: 58 DSPTGRVGGRPVAKFTQVRHTTPMLSLENAFTEKDIVDFDDRMKRFLGLSGAEEIGYVCE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG + + Y G + RGDG GE+V+ ++ I IP + P ++ VRGE Sbjct: 118 PKMDGVAVELVYRDGLLAIGSTRGDGLVGEEVTQNLKTIKDIPLRLQTEEPPGLLTVRGE 177 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VY+ F N E G P+ANPRNAA+G LR+L+ R L+ F + G+ + Sbjct: 178 VYLPLEPFRKFNQEREEAGEPPFANPRNAAAGSLRQLDSKITAKRPLSIFCYAPGEVDGV 237 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + Q + L + PVN R G++ YYNEM R LPY+IDG+V KVD F Sbjct: 238 AFQSQSDFLSTIPTWRIPVNPLTRLVPGVQGVLDYYNEMMEKRDDLPYEIDGVVVKVDRF 297 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ+ LGE++RSPRW I+ KF +QA+T + DI Q+GRTG++TPVA LEPVN+ G +++ Sbjct: 298 SLQRDLGEKSRSPRWAIAWKFPPRQATTVVNDIVPQVGRTGVITPVAHLEPVNVSGVMVS 357 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN + ++ +DIR GD V+V+RAG+VIP VV ++V +R Sbjct: 358 RATLHNWEEMER-----------KDIRRGDTVVVERAGDVIPAVVQVLVEKRQGSETLLP 406 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP+C VVR + GL C AQ LER+KHF +R A +I+GLG++ Sbjct: 407 VPQACPVCGGEVVRIPGEVAVR-------CVGLNCPAQALERVKHFAARRAMDIDGLGEK 459 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ + IR ADI+ L G NL +SI + Sbjct: 460 FIEQLLNLK----LIRNVADIYRLTEEDFMQF------ERMGKKLAENLLNSIAASKERE 509 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R IF+LGIRHVG A+ LA + S +N A L + VG +A Sbjct: 510 LSRLIFALGIRHVGEHTAKLLASAFGSMENLAAASE----------EELTSIREVGPQVA 559 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +I +F+++ N+ + L + + EK V K VFTG L+K R +A++ Sbjct: 560 ASIADFFKSEENLEVLRELKEHGV-NPRVEEKRVGGRFTGKTFVFTGALEKFTRDEAKKM 618 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V G + +S+KTD ++ G + GSKL+KAQQLGV++++E+ FL L+Q Sbjct: 619 VELEGGHAAGSVSKKTDYVVAGADAGSKLDKAQQLGVRVLSEDDFLELMQ 668 >gi|152981161|ref|YP_001353755.1| DNA ligase (polydeoxyribonucleotide synthase) [Janthinobacterium sp. Marseille] gi|166215814|sp|A6SZQ8|DNLJ_JANMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|151281238|gb|ABR89648.1| DNA ligase (Polydeoxyribonucleotide synthase) [Janthinobacterium sp. Marseille] Length = 692 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 248/718 (34%), Positives = 372/718 (51%), Gaps = 47/718 (6%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 E + L E++ H+ Y+ P I D+EYD L R A+ + P+L Sbjct: 18 PEEPDASNPAARAAWLRDELNRHNYSYHVLDNPSIPDAEYDKLFRELQALETSHPELLVF 77 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P ++G + +VTHS+P LSL + ED+ F R+ I + Sbjct: 78 ---DSPTQRVGALALSAFPQVTHSVPMLSLGNGFEDEDIIAFDKRVSDGLNST---EIEY 131 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEV 187 E K DG I +RYE G V AA RGDG +GE+V+ IR + IP + P++++V Sbjct: 132 ATELKFDGLAINLRYEDGILVEAATRGDGATGENVTTNIRTVRAIPLRLHTATPPKVLDV 191 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246 RGEV + K D LN G K +ANPRNAA+G LR+L+ R L FF +G+G Sbjct: 192 RGEVMMYKADLAKLNARQRDAGGKEFANPRNAAAGSLRQLDSRITAQRTLRFFAYGIGML 251 Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 +L LG PV G++ +Y + R TLPY+IDG+VYK Sbjct: 252 EGAEMPPSHSALLDWYAELGLPVCAERAVVKGAAGLLEFYKAVGQKRPTLPYEIDGVVYK 311 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ Q+QLG +R+PR+ I+HKF ++A T + I++Q+GRTG +TPVARL PV +GG Sbjct: 312 VNRVEQQQQLGFVSRAPRYAIAHKFPAEEALTTVQGIEVQVGRTGAITPVARLAPVLVGG 371 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +TNATLHNED ++ +DI++GD V+V+RAG+VIP+VV + +R DA Sbjct: 372 VTVTNATLHNEDEVRR-----------KDIQIGDTVIVRRAGDVIPEVVAYVPEKRPVDA 420 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIE 484 QPF P+ CP+C S +V+ + A RC+G + C+AQ+ L HFVSR A ++E Sbjct: 421 QPFVMPTNCPVCNSPIVKLEDE------AIARCSGGWVKCAAQRKGGLLHFVSRRAMDVE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG Q ++ I AD++ L + + D S N+ ++ K Sbjct: 475 GLGDQLVEQLVDK----HIITTAADLYKL------GFRALAELDRMADKSAQNVMAALEK 524 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 ++ +L RFI++LGIRHVG A+ LA+++ + + Q L+ V + Sbjct: 525 SKSTTLARFIYALGIRHVGEATAKELARHFGNLEALLQASE----------EQLLEVADI 574 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G ++AQ+I F +P N+ +E L +N K V TGTL + R Sbjct: 575 GPVVAQSIRSFLSDPLNMELIEQLQAAGVRWPEHVVENKPKPFAGKTFVLTGTLPTLSRD 634 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 +A E + G V+ +S+KT ++ G + GSKL KA++LG+ I++E L LL + Sbjct: 635 QAAEKIEAAGGKVAGSVSKKTSYVVAGADAGSKLAKAEELGITILDESALLQLLDTHE 692 >gi|313201136|ref|YP_004039794.1| DNA ligase, nad-dependent [Methylovorus sp. MP688] gi|312440452|gb|ADQ84558.1| DNA ligase, NAD-dependent [Methylovorus sp. MP688] Length = 689 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 261/726 (35%), Positives = 383/726 (52%), Gaps = 54/726 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + ++ L ++I+ ++ YY P + DSEYD L R A+ HA P+L P+ Sbjct: 10 TSATPEVQIRQLREQINLYNYQYYVLDDPSVPDSEYDKLFRELQALEHAHPELL---TPD 66 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++G + V H LSL + +L F RI + + +EP Sbjct: 67 SPTQRVGASPLKAFASVQHRQAMLSLNNAFEESELTAFDKRIRDALGIA---QVEYAVEP 123 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEV 191 K DG IT+ YE G FV A RGDG++GEDVS+ +R I IP N P +IEVRGEV Sbjct: 124 KFDGLAITLTYENGLFVQGATRGDGYTGEDVSSNLRTIRAIPMRLPVENPPALIEVRGEV 183 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249 + K DF LN + G K +ANPRNAA+G LR+L+P TR L FF +GLG Sbjct: 184 LMLKRDFDKLNRQQAERGEKLFANPRNAAAGSLRQLDPAITATRPLMFFAYGLGIAEGVP 243 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + + L PV++ G++ YY + + R LP+DIDG+VYKV+ Sbjct: 244 QLSTHAAAMDYLASLRLPVSDQRDTVQGLAGLLDYYARIGAARPNLPFDIDGVVYKVNSI 303 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q +LG +R+PRW ++HKF ++A T + ID+Q+GRTG +TPVARL+PV +GG +T Sbjct: 304 AQQNELGFVSRAPRWAVAHKFPAQEALTEIQAIDVQVGRTGAITPVARLKPVFVGGVTVT 363 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN+D I +D+RVGD V V+RAG+VIP+VV +++ +R D + Sbjct: 364 NATLHNQDEIDR-----------KDVRVGDTVSVRRAGDVIPEVVAVVLEKRPADTVAYR 412 Query: 430 ----FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 CP+C S V+R + A RCTGGL CSAQ+ + + HF SR A +IEG Sbjct: 413 LLEAINHQCPVCGSHVIRQEDE------AVARCTGGLFCSAQRKQAVLHFASRRAIDIEG 466 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG++ +D I ADI+ L + ++ + S N+ D++ Sbjct: 467 LGEKLVDQLVD----GAHIHTLADIYRL------DLATLSSLDRMAEKSAQNILDALQAS 516 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + +L RFI++LGIR+VG A+ LA+Y+ S Q D L +VP VG Sbjct: 517 KATTLARFIYALGIRNVGEATAKDLARYFGSLQALLAA----------DIEQLQQVPDVG 566 Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 I+A++I +F P N ++ L + + + K LV TGTL + R Sbjct: 567 PIVAESIRQFLSEPHNQQVIQDLQDVGLHWTESDGAGTQQGVLTGKTLVLTGTLPTMSRD 626 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 +A+ + G V+ +S+KTD ++ G+ GSKL KAQ+LGV +++E L LL+ + Sbjct: 627 QAKALIEAAGGKVAGSVSKKTDFVVAGEEAGSKLTKAQELGVAVIDENGLLALLEDKQAS 686 Query: 725 LRIHDD 730 HDD Sbjct: 687 ---HDD 689 >gi|261253653|ref|ZP_05946226.1| DNA ligase [Vibrio orientalis CIP 102891] gi|260937044|gb|EEX93033.1| DNA ligase [Vibrio orientalis CIP 102891] Length = 669 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 247/707 (34%), Positives = 391/707 (55%), Gaps = 47/707 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + +++L+ L + + YH YY P I D+EYD L R + P+L + P Sbjct: 4 EIQEKLNQLRETLHYHGVKYYVEDNPEIPDAEYDRLMRDLMELESQHPELM---SIDSPS 60 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG V H IP LSL+ ++ +L F R+ + F EPK+D Sbjct: 61 QRVGGAPLDGFGSVKHEIPMLSLDNAFDDGELESFHKRMKDRIPSATFDV--FCCEPKLD 118 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYIS 194 G +++ YE G V AA RGDG +GE+++ +R I IP L P IEVRGEV++ Sbjct: 119 GLAVSLLYENGVLVQAATRGDGATGENITENVRTIKAIPLKLQGEGWPARIEVRGEVFMP 178 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE-IFAK 252 K F LN+ + G K + NPRNAA+G LR+L+ TR L+F+ + +G + Sbjct: 179 KAGFDKLNELALKKGDKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVEGAELSS 238 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Y+ +++ G P+ +Q ++ + +YY ++ R +L Y+IDG+V KVD +LQ Sbjct: 239 SHYQRFLQLKGWGLPMCPETKQVSSLDDVKAYYQDILERRESLTYEIDGVVIKVDNIALQ 298 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +QLG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++NAT Sbjct: 299 EQLGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNAT 358 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I+ L + VGD V+++RAG+VIP++V ++ R +A+ FP Sbjct: 359 LHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVSERRPENAREIVFPE 407 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C+S+V R A RC+GGL C AQ+ E LKHFVSR A +++GLG++ ++ Sbjct: 408 NCPVCKSQVERVEGE------AVARCSGGLVCQAQRKEALKHFVSRKALDVDGLGEKVIE 461 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 E + PAD+F L S I + G S N+ D++NK + +L R Sbjct: 462 QLVDRE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVDALNKSKETTLPR 511 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F++SLGIR VG A +LA+++ + A + +L+ V +G+I+A I Sbjct: 512 FLYSLGIREVGEATAANLAQHFKTLD----------AVKIANHEALVEVQDIGEIVASHI 561 Query: 613 VEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 + F+ +N+ ++ L+ + + +++ + K +V TG+L ++ R A+ + Sbjct: 562 IAFFAQDKNLTVIDDLILQGVHWSDVEEKDESTPQPLAGKTVVLTGSLSQLTRSDAKAAL 621 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 LGA V+ +S+KTDI+ G+N GSKL KAQ+LG++I EE + L Sbjct: 622 QNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIRTEEDLISL 668 >gi|190150622|ref|YP_001969147.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263969|ref|ZP_07545570.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|254781246|sp|B3H275|DNLJ_ACTP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|189915753|gb|ACE62005.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870658|gb|EFN02401.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 682 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 253/708 (35%), Positives = 401/708 (56%), Gaps = 46/708 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +L +L Q++ ++ Y+ P++ D+EYD L + P+ + + P ++ Sbjct: 16 AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + +VTH IP LSL+ ++ E+L F+ R+ + + ++ F EPK+DG Sbjct: 73 GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKND 197 ++I Y G AA RGDG +GED+++ IR I IP N P +EVRGEV++ + Sbjct: 132 VSILYVDGVLNQAATRGDGSTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKG 191 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGKTSEIFAKGQ 254 F ALN+ + G K +ANPRNAA+G LR+L+P + N + G+ ++ + Sbjct: 192 FEALNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPVTH 251 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y ++++ R TL YDIDG V KV++ LQ+Q Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGAVLKVNDIGLQEQ 311 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V +++ R +A+ FP+ C Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E + PAD+F L+ T + + G S N +SI K +N +L RF+ Sbjct: 475 MERE----LVHTPADLFKLE------HTTLMRLERMGGKSAQNALNSIEKAKNTTLARFL 524 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ + + L V VG+++A IV Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574 Query: 615 FYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+Q P N+ VE L+ + + + ++ K +V TGTL ++ R +A+ + Sbjct: 575 FWQEPHNVTVVEDLISQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 G VS +S KTD +I G+ GSKL KAQ+LGVK++ E++F+ L + Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLTKAQELGVKVLTEQEFIALTGEN 682 >gi|89900985|ref|YP_523456.1| DNA ligase [Rhodoferax ferrireducens T118] gi|123397178|sp|Q21WC8|DNLJ_RHOFD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|89345722|gb|ABD69925.1| DNA ligase, NAD-dependent [Rhodoferax ferrireducens T118] Length = 690 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 261/712 (36%), Positives = 389/712 (54%), Gaps = 50/712 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 ++ L + + H YY P I D+EYD + + AI P+L P+ P ++GG Sbjct: 19 VAQLRRALHEHAHHYYVEDAPTIPDAEYDRMFQELQAIEAQHPELI---TPDSPTQRVGG 75 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKDDNS-IFFTLEPKIDGT 137 V H++P LS+ + E R F TR+ R + + + EPK DG Sbjct: 76 RALEQFASVRHAVPMLSIRTETDTEASGARNFDTRVRRELGLDEAAPAVAYVAEPKFDGL 135 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + +RYE G V AA RGDG GEDV+ +R I IP L + P I+EVRGEVY+ ++D Sbjct: 136 AMNLRYESGILVQAATRGDGEVGEDVTQNVRTIGQIPLRLPADAPSILEVRGEVYMRRDD 195 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF-----A 251 F LN++ A G+K + NPRNAA+G +R+L+P R L+FF +GLG+ + Sbjct: 196 FEKLNEQQRARGQKTFVNPRNAAAGAVRQLDPAIAAQRPLSFFAYGLGEVTPEQAGGPAF 255 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 YE+LQ ++ GFPV+ V A +V+YY + R LP+DIDG+VYKV+ +L Sbjct: 256 GTHYELLQALKTWGFPVSALVGLAQGATELVAYYESIARQRDALPFDIDGVVYKVNSLAL 315 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+++G R PRW ++HKF ++ T +LDID+Q+GRTG LTPVA+L PV +GG +TNA Sbjct: 316 QRRMGFVTREPRWAVAHKFPAQEQFTTVLDIDVQVGRTGKLTPVAKLAPVFVGGVTVTNA 375 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHNED + +D+RVGD V+V+RAG+VIP+VV +++++R P A F+ P Sbjct: 376 TLHNEDEARR-----------KDVRVGDTVIVRRAGDVIPEVVSVLLDKRQPGATEFTMP 424 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C S VR+ +RCTGGL CSAQ+ + + HF R A +EGLG++ + Sbjct: 425 RQCPVCGSAAVREEGE------VDYRCTGGLFCSAQRKQAILHFAQRRAVEVEGLGEKLV 478 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 D IRI D++ L T + ++ D S N+ ++ K + +L Sbjct: 479 DQLVD----GHVIRILPDLYRL------GLTALASLDRMADKSAQNILQALEKSKQTTLP 528 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RF+F LGIRHVG A+ LA+++ S L++V +G I+AQ+ Sbjct: 529 RFLFGLGIRHVGEATAKELARHFGSLDAVMDA----------SLEQLLQVNDIGPIVAQS 578 Query: 612 IVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 + F+ P N VE L V+ G + + K V TGTL + R +A++ + Sbjct: 579 LRTFFDQPHNREVVEQLRACGVTWQEGPPAPVTPTPLSGKTFVITGTLPSMSRDEAKDLI 638 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 G V+ +S+KT ++ G GSKL KAQ+LGV +++E LL ++ Sbjct: 639 EAAGGKVAGSVSKKTTFVVAGTEAGSKLTKAQELGVAVLDEAGLKELLDGHS 690 >gi|254448715|ref|ZP_05062173.1| DNA ligase, NAD-dependent [gamma proteobacterium HTCC5015] gi|198261723|gb|EDY86010.1| DNA ligase, NAD-dependent [gamma proteobacterium HTCC5015] Length = 673 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 244/707 (34%), Positives = 370/707 (52%), Gaps = 46/707 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++ + SL +++ H YY +P I D+EYD L R ++ +P+ S + P Sbjct: 7 IQQHIDSLREQLHQHAHAYYVLDEPSIPDAEYDRLFRELQSLEAQYPE---SHSDDSPTQ 63 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G + V H +P LSL +++ ++L F R+ + + + EPK+DG Sbjct: 64 RVGAAPLDAFVSVEHEVPMLSLGNVFSDDELVAFDQRLRERLD--YPSELEYAAEPKLDG 121 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR--VLSLNIPEIIEVRGEVYIS 194 I++ YE G V A RGDG GEDV+ I+ I +IP + P+ +EVRGEVY+ Sbjct: 122 LAISLLYEDGVLVRGATRGDGSVGEDVTQNIKTIHSIPLRLPKRGDWPKRLEVRGEVYMP 181 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAKG 253 K F A+N + G K +ANPRNAA+G LR+L+ + + + +G Sbjct: 182 KAGFEAMNAKAREQGDKVFANPRNAAAGSLRQLDSRIAASRPLDMYCYSVGVFEGELPAT 241 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E L + GF + G YY ++ R TLPY+IDG+VYKV+ LQ Sbjct: 242 HSETLAMLGRWGFRICPESAVVTGASGCAEYYQQIGRARDTLPYEIDGVVYKVNSLKLQG 301 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG AR+PRW +HKF + T L D++ Q+GRTG LTPVARLEPVN+ G +++NATL Sbjct: 302 DLGFVARAPRWATAHKFPPSEELTVLQDVEFQVGRTGALTPVARLEPVNVAGVVVSNATL 361 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D +K +D+R+GD V+V+RAG+VIP+VV ++ R +A PS Sbjct: 362 HNMDEVKR-----------KDVRIGDTVIVRRAGDVIPEVVKSVLERRPKEAPAIVMPSH 410 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S V+R A RC+GGL CSAQ+ E +KHF SR A +I+G+G + +D Sbjct: 411 CPVCGSDVIRPEGE------AVARCSGGLYCSAQRREAIKHFASRKALDIDGVGDKLIDQ 464 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E I D+F L Q S + G+ S T +++ + +L +F Sbjct: 465 LVDGE----LIDHVDDLFHLTVEQLAS------LERMGEKSATKAIEALENAKRTTLPKF 514 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F+LGIR VG AR+LA ++ + Q L+ V VG I+A + Sbjct: 515 LFALGIREVGEVTARNLAMHFGDLEPIMQASE----------DDLLAVADVGPIVAAHVK 564 Query: 614 EFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F++ P NI ++ LL+ + + ++ V TGT ++R +A++ + Sbjct: 565 SFFEQPHNIEVIDKLLEAGFVWEPIEVAEQKEAVLDGHTYVLTGTFTAMKRDEAKQQLLA 624 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA VS +S+KT + GD+PGSK++KA +L V + EE L LL+ Sbjct: 625 LGAKVSGSVSKKTTAVFAGDSPGSKVDKAAELEVPVKTEEDLLELLK 671 >gi|119472555|ref|ZP_01614603.1| NAD-dependent DNA ligase [Alteromonadales bacterium TW-7] gi|119444879|gb|EAW26179.1| NAD-dependent DNA ligase [Alteromonadales bacterium TW-7] Length = 672 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 247/714 (34%), Positives = 387/714 (54%), Gaps = 46/714 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S ++++ L + H+ YY P I D+EYD L R A+ P+ Sbjct: 1 MS-SSISEQINHLRTLLEQHNYNYYVLDTPSIPDAEYDRLLRELSALETQNPEFL---SA 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+GG +V H +P LSL+ ++ ++ F RI D + F E Sbjct: 57 DSPTQKVGGAALSKFEQVAHQVPMLSLDNAFSEDEFTGFNRRIKERLMSID--ELTFCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK+DG ++I Y G V AA RGDG +GE+++ ++ I +P L + P+ +EVRGEV Sbjct: 115 PKLDGLAVSIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPKELEVRGEV 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEI 249 ++ F LN+E G K + NPRNAA+G LR+L+ R L F+ + G Sbjct: 175 FMDSAGFEKLNNEAQKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGS 234 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + ++ L+K+ G P+ + + YY+++ + RS L Y+IDG+V KV++ Sbjct: 235 IPEDHFQQLEKLTDWGLPLCPETKLVEGPQAALDYYDDILTRRSELKYEIDGVVIKVNKK 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG AR+PRW I++KF ++ T+LLD++ Q+GRTG +TPVARLEPV +GG ++ Sbjct: 295 ALQERLGFVARAPRWAIAYKFPAQEEVTQLLDVEFQVGRTGAITPVARLEPVFVGGVTVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I L ++VGD V+++RAG+VIP++ +++ R DA+ Sbjct: 355 NATLHNGDEIARL-----------GVKVGDTVIIRRAGDVIPQITQVVLERRPTDARDIV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FPS CPIC S V + A RCTGGL C AQ+ + +KHF SR A +I+GLG + Sbjct: 404 FPSACPICDSHVEKVEGE------AVARCTGGLVCPAQRKQAIKHFASRKALDIDGLGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D E I+ PAD+F L++ E++ G S NL ++N+ + + Sbjct: 458 IVDQLVDRE----LIKTPADLFILKQ------GHFESLERMGPKSAKNLVTALNEAKATT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L +F++SLGIR G A++LA ++L+ +N SL +V VGDI+A Sbjct: 508 LAKFLYSLGIREAGEATAQNLANHFLTLENIISA----------SVESLTQVSDVGDIVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQE 668 + F+ N+ V AL+++ + + V TGTL + R+ A+ Sbjct: 558 SHVRGFFDEEHNLAVVNALIEQGVHWPALSAPSEDEQPLAGLTYVLTGTLNTLNRNDAKA 617 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + QLGA VS +S KTD ++ G+ GSKL KAQ LG+ ++ E+ + LL+++N Sbjct: 618 RLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDVLTEDGLIELLEKHN 671 >gi|56460801|ref|YP_156082.1| NAD-dependent DNA ligase [Idiomarina loihiensis L2TR] gi|81362279|sp|Q5QUK1|DNLJ_IDILO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56179811|gb|AAV82533.1| NAD-dependent DNA ligase [Idiomarina loihiensis L2TR] Length = 670 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 251/710 (35%), Positives = 389/710 (54%), Gaps = 46/710 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + + + LEQ ++ ++ YY+ +P + D+EYD L R + PDL ++ P Sbjct: 3 QSVHQRMQELEQLLNRYNQEYYENDEPSVPDAEYDRLFRELKTLETEHPDLKSAQ---SP 59 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 K+GG+ V H +P LSL+ +++++ F R+ + + ++ F EPK+ Sbjct: 60 TMKVGGKPLGQFRSVEHEVPMLSLDNAFSVDEFEAFSKRVEQRLD--TNQTVTFCCEPKL 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++ YE G V A RGDG SGED++ ++ I +P LS ++PE +EVRGEV + Sbjct: 118 DGAAVSLLYENGLLVRGATRGDGQSGEDITENVKTIRNVPLKLSGDVPERLEVRGEVVMP 177 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIF--A 251 F N++ K +ANPRNAA+G LR+L+ R L+F+ + LG SE Sbjct: 178 LGAFERFNEQARQREEKVFANPRNAAAGSLRQLDSRITAKRPLHFYAYSLGLISETTQLP 237 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 ++ L +++ G PVN ++ ++ G YY + + R TL YDIDG+V+KVD L Sbjct: 238 DSHHQRLLQLKDWGLPVNIEIKTVDSVQGCDDYYEAILARRDTLNYDIDGVVFKVDSIRL 297 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+ LG AR+PRW I+ KF ++ T + +D Q+GRTG +TPVARLEPVN+GG ++NA Sbjct: 298 QQDLGFVARAPRWAIARKFPAQEQLTTITGVDFQVGRTGAITPVARLEPVNVGGVTVSNA 357 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I+ L +R+GD V ++RAG+VIP+VV +I ++R + + FP Sbjct: 358 TLHNADEIERL-----------GVRIGDCVSIRRAGDVIPQVVSVIKDKRPENTKAIEFP 406 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CPICQS + R A RCTGGL C+AQ+ E +KHF SR A +I+GLG + + Sbjct: 407 QHCPICQSDIERVEGE------AVARCTGGLYCAAQRKEAIKHFASRKAMDIDGLGDKIV 460 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + + + I+ PAD++ L + + + + G S NL ++I + +L Sbjct: 461 EQLVERD----WIKSPADLYRLSKAELAT------LPRMGAKSAENLRNAIKATQETTLA 510 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RFI++LGIR VG A +LA ++ + + L VP VG ++A+ Sbjct: 511 RFIYALGIREVGEATANALANHFKNLDALIAA----------ESEQLQEVPDVGAVVAKH 560 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYV 670 IV F+ N V L + +S G +V S + V TGTL + R +A+ + Sbjct: 561 IVAFFHEAHNQQVVAELREFISWPEGEEASSVQSDRLSGNTYVITGTLSTMTRDEAKSAL 620 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA V++ +S+KT ++ G+N GSKL KAQ LG+ I++E LL Sbjct: 621 EALGAKVASSVSKKTTALVAGENAGSKLTKAQSLGLDILDENALAELLSD 670 >gi|89094416|ref|ZP_01167356.1| DNA ligase [Oceanospirillum sp. MED92] gi|89081308|gb|EAR60540.1| DNA ligase [Oceanospirillum sp. MED92] Length = 674 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 260/715 (36%), Positives = 401/715 (56%), Gaps = 47/715 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + L L ++++H+ YY P + D+EYD L R + P+L + P Sbjct: 2 SIEQHLQQLRDQLNHHNYQYYVLDDPEVPDAEYDRLFRELKKLESDNPELI---TEDSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G + +V+H +P LSL+ +N ED+ +F RI ++ +I + EPK+D Sbjct: 59 QRVGSTPLSAFSQVSHELPMLSLDNAFNDEDMEEFDRRIKDRLNMQE--TISYACEPKLD 116 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194 G +++ YE+G V A RGDG +GED++ +R IPTIP L+ N P+ +EVRGE+Y+ Sbjct: 117 GIAVSLLYEQGLLVRGATRGDGSTGEDITQNVRTIPTIPLKLTGDNFPDRLEVRGEIYMP 176 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE-IFAK 252 K F ALND+ A G+K + NPRNAA+G LR+L+ +R L + +G A Sbjct: 177 KAGFDALNDKARATGQKTFVNPRNAAAGSLRQLDSRITASRPLEMCSYSVGVVEGGALAG 236 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 E+L +++ GF +N + G + YY + +R TLPY+IDG+V+KVD+ LQ Sbjct: 237 KHSEILAQLKEWGFRLNPLLESVEGVAGCLDYYRRISELRDTLPYEIDGVVFKVDQLELQ 296 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG +R+PRW I+HKF ++ T + I+ Q+GRTG +TPVARLEPV +GG ++NAT Sbjct: 297 QRLGFVSRAPRWAIAHKFPAQEELTSIRSIEFQVGRTGAVTPVARLEPVFVGGVTVSNAT 356 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I+ L D+R GD V+++RAG+VIP+VV ++ +R D + P Sbjct: 357 LHNMDEIERL-----------DVRAGDTVVIRRAGDVIPQVVRVLHEKRPADTEAVIIPD 405 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CPIC+S++ R A RC+GGL C AQ+ E LKHF SR A +I+GLG + ++ Sbjct: 406 ACPICESKIERIEGE------AVARCSGGLYCEAQRKEALKHFASRKAMDIDGLGDKLIE 459 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + PAD++ LQ+ T++ + G S NL ++I RN L R Sbjct: 460 MLVD----LDMVHNPADLYALQQ------TELARLERMGPKSAENLVNAIQASRNTELPR 509 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+++LGIR VG ARSLA ++L + +L+ VP VG I+A+ I Sbjct: 510 FLYALGIREVGEATARSLAMHFLDLPALIEASE----------EALLEVPDVGPIVAKHI 559 Query: 613 VEFYQNPRNICAVEALLKEVSPSIG--RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 F+Q NI ++AL ++ S + S I + V TG L+++ R +A+ Y+ Sbjct: 560 KSFFQQSHNIEVLDALREKAGVSWSVLETKDEESQPISGETWVLTGKLEQMGRSEAKNYL 619 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 +LGA V+ +S KTD ++ G GSKL+KA +LG+K M+E+ F+ L + + Sbjct: 620 LELGAKVAGSVSAKTDCVVAGPGAGSKLKKATELGIKTMDEDSFVSFLAEQGINI 674 >gi|322513636|ref|ZP_08066733.1| NAD-dependent DNA ligase LigA [Actinobacillus ureae ATCC 25976] gi|322120561|gb|EFX92462.1| NAD-dependent DNA ligase LigA [Actinobacillus ureae ATCC 25976] Length = 681 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 255/719 (35%), Positives = 401/719 (55%), Gaps = 51/719 (7%) Query: 9 IEALSIEQARK-----ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 + LS QA+ +L +L Q++ ++ Y+ P++ D+EYD L + P Sbjct: 1 MPLLSQMQAQADTTFAQLEALRQKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHP 60 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 + + + P ++G + +VTH IP LSL+ ++ EDL F+ R+ + + Sbjct: 61 EWITA---DSPTQRVGAKPLDGFAQVTHEIPMLSLDNAFSDEDLDSFLRRMESYISENPL 117 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIP 182 S+ F EPK+DG ++I Y G AA RGDG +GED+++ IR I IP N P Sbjct: 118 -SLAFCCEPKLDGLAVSILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPP 176 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFF 239 +EVRGEV++ + F LN+ + K +ANPRNAA+G LR+L+P + N + Sbjct: 177 ARLEVRGEVFMPQKGFEELNERALEKSEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAY 236 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 G+ ++ + +E LQ ++ +G PVNN +R ++++Y ++++ R TL YDI Sbjct: 237 GIGVYESDDELPATHFERLQWLKSIGIPVNNEIRLVTGHEQLLAFYADIQAKRPTLGYDI 296 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG V KV++ LQ+QLG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LE Sbjct: 297 DGTVLKVNDIGLQEQLGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLE 356 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G ++NATLHN D I+ L I +GD V+++RAG+VIP++V +++ Sbjct: 357 PVFVAGVTVSNATLHNGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVME 405 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R +A+ FP+ CP+C+S VVR A RCTGGL C AQ+ E LKHFVSR Sbjct: 406 RRPENAEKIEFPTACPVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRK 459 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +I+G+G++ ++ E + PAD+F L T + + G S N Sbjct: 460 AMDIDGVGEKLIEQLMDRE----LVHTPADLFKL------DHTTLMRLDRMGKKSAQNAL 509 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +SI K +N +L RF+F+LGIR VG A++LA ++ + + + L Sbjct: 510 NSIEKAKNTTLARFLFALGIRDVGEATAQNLANHFHNLEAIRMAT----------FEQLQ 559 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTL 658 V VG+++A IV F+Q P N+ VE L+ + + + ++ K +V TGTL Sbjct: 560 EVQDVGEVVANRIVRFWQEPHNVAVVEDLIAQGVYWQDVVQVEIADNPLKGKNVVLTGTL 619 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 ++ R +A+ + G VS +S KTD +I G+ GSKL KAQ+LGVK++ E++ + L Sbjct: 620 TQLTRDQAKALLQSFGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQELVDL 678 >gi|325982988|ref|YP_004295390.1| DNA ligase, NAD-dependent [Nitrosomonas sp. AL212] gi|325532507|gb|ADZ27228.1| DNA ligase, NAD-dependent [Nitrosomonas sp. AL212] Length = 677 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 252/715 (35%), Positives = 389/715 (54%), Gaps = 51/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IE+ R + L EI H+ YY P I D+EYD L R I +P L + + Sbjct: 5 IEKIRHRIQDLRAEIELHNYRYYVLDTPTIPDAEYDRLLRELQHIEQDYPQLITA---DS 61 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H P LSL ++ ++ F R+ +++ + +EPK Sbjct: 62 PTQRVGAAPLKAFSQVVHRRPMLSLSNAFDDAEVEAFDRRVCEGL---AVDNVEYAVEPK 118 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVY 192 DG +++ YE G F A RGDG++GE+++ +R I +IP LN P +EVRGEV Sbjct: 119 FDGLAVSLCYENGIFKTGATRGDGYTGENITLNLRTIRSIPLSLPVLNPPSWLEVRGEVL 178 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + DFLALN A G K +ANPRNAA+G LR+L+P TR L FF +G+G + + Sbjct: 179 MLRADFLALNQRQSAKGEKEFANPRNAAAGSLRQLDPGITATRRLTFFAYGVGEYQDCHM 238 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 ++ + L FP+ +++YY ++ R LPYDIDG+VYKV+ Sbjct: 239 PLDKHSHVMAYLASLHFPIAKEGGVVKGLQELLAYYQTIEVQRVRLPYDIDGVVYKVNSL 298 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q++LG +R+PR+ ++HKF ++A T+L I+IQ+GRTG LTPVARL+PV +GG +T Sbjct: 299 AQQERLGFVSRAPRFALAHKFPAQEAITQLSGIEIQVGRTGALTPVARLKPVFVGGVTVT 358 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ +D+R+GD V+V+RAG+VIP++V +I+ +R D Q F Sbjct: 359 NATLHNADEIER-----------KDVRIGDTVIVRRAGDVIPEIVSVILEKRPVDTQVFV 407 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP+C ++ VR ++ A RCTGGL C AQ+ + + HF SR A +I + Sbjct: 408 MPEHCPVCGAKAVRLVDE------AVSRCTGGLFCPAQRKQAILHFASRRAMDI----EG 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 D + IR PAD++ L + ++ + S N+ +I K ++ + Sbjct: 458 LGDKLVEQMVDRAIIRTPADLYKL------GLGALADLERMAEKSAGNILRAIEKSKHTT 511 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RFI++LGIR+VG A+ LA + S + + L ++P VG ++A Sbjct: 512 LARFIYALGIRNVGEATAKDLAAHCGSLDRLIEAGS----------ERLQQIPDVGPVVA 561 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSEIENKKLVFTGTLQKIQRHK 665 Q+I +F+ N +E L +V + ++ K V TGTL + R + Sbjct: 562 QSIADFFAEAHNREVIEQLRACGVYWNEHEGISVLAGEARPLQGKTFVLTGTLPIMSREE 621 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+E + LG VS +S+KTD ++VG +PGSK +KA LG+ +++E L LLQ+ Sbjct: 622 AKEKIELLGGKVSGSVSKKTDYVVVGADPGSKYDKALSLGIAVLDEAGLLELLQE 676 >gi|209522379|ref|ZP_03270993.1| DNA ligase, NAD-dependent [Burkholderia sp. H160] gi|209497185|gb|EDZ97426.1| DNA ligase, NAD-dependent [Burkholderia sp. H160] Length = 688 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 252/714 (35%), Positives = 383/714 (53%), Gaps = 49/714 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + L E+ + YY +P + D+EYD L + + I PDL P+ P + Sbjct: 15 ADRAAWLRAELERANYAYYVLDQPDLPDAEYDKLFKELERIEAEHPDLIV---PDSPTQR 71 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS---IFFTLEPKI 134 +GGE V H P LSL + ED+ F RI + + E K Sbjct: 72 VGGEAASGFEPVVHDQPMLSLNNGFADEDIVAFDKRIGDALGNNASEPAVPVDYAAELKF 131 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII-EVRGEVYI 193 DG I++RY G FV A+ RGDG +GE+V+ +R I +IP L + +VRGEV + Sbjct: 132 DGLAISLRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLKLKGKRVPRVLDVRGEVLM 191 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIFA 251 K DF LN+ A ++ +ANPRNAA+G LR+L+ R L+FF +G+G Sbjct: 192 FKRDFERLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLEGIEMP 251 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 E+L + +G PVN+ G++ +++ + R LPYDIDG+VYKV+ Sbjct: 252 ATHSELLDWYKEMGLPVNSERAVVQGAEGLLGFFHAVGEKRDRLPYDIDGVVYKVNRRDE 311 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+ LG +R+PR+ ++HKF ++A TRL+ ID+Q+GRTG +TPVARLEPV +GGA +TNA Sbjct: 312 QETLGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARLEPVFVGGATVTNA 371 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHNED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA+ F P Sbjct: 372 TLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAREFVMP 420 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+C S + R + A RCTGGL C AQ+ + L HF R A +I+GLG++ + Sbjct: 421 TQCPVCGSSIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKII 474 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 D + +R PAD+F L + + F + S NL DS+ K ++ +L Sbjct: 475 DQLVEQN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTLA 524 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RFI++LGIRHVG A+ LAK++ S L+ V VG ++A++ Sbjct: 525 RFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SLEELLEVNDVGPVVAES 574 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 I +F+ N +E L + K + + +V TGTL + R A+E Sbjct: 575 IHQFFAEDHNRTVIEQLRAPGKVAWPEGPPAPKAPQGVLVGQTVVLTGTLPNLSREDAKE 634 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + GA V+ +S+KT ++ G + GSKL KA++LG+ +++E+ LL+ ++ Sbjct: 635 MLEAAGAKVAGSVSKKTSYVVAGADAGSKLAKAEELGIPVLDEDGMRKLLEGHS 688 >gi|253999028|ref|YP_003051091.1| DNA ligase, NAD-dependent [Methylovorus sp. SIP3-4] gi|253985707|gb|ACT50564.1| DNA ligase, NAD-dependent [Methylovorus sp. SIP3-4] Length = 699 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 260/726 (35%), Positives = 384/726 (52%), Gaps = 54/726 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + ++ L ++I+ ++ YY P + DSEYD L R A+ HA P+L P+ Sbjct: 20 TFATPEVQIRQLREQINLYNYQYYVLDDPSVPDSEYDRLFRELQALEHAHPELL---TPD 76 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++G + V H LSL + +L F RI + + +EP Sbjct: 77 SPTQRVGASPLKAFASVQHRQAMLSLNNAFEEGELTAFDKRIRDALGIA---QVEYAVEP 133 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEV 191 K DG IT+ YE G FV A RGDG++GEDVS+ +R I IP N P +IEVRGEV Sbjct: 134 KFDGLAITLTYENGLFVQGATRGDGYTGEDVSSNLRTIRAIPMRLPVENPPALIEVRGEV 193 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249 + K DF LN + G K +ANPRNAA+G LR+L+P TR L FF +GLG Sbjct: 194 LMLKRDFDKLNRQQAERGEKLFANPRNAAAGSLRQLDPAITATRPLMFFAYGLGIAEGVP 253 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + + L PV++ G++ YY + + R LP+DIDG+VYKV+ Sbjct: 254 QLSTHAAAMDYLASLRLPVSDQRDTVQGLAGLLDYYTRIGAARPNLPFDIDGVVYKVNSI 313 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q +LG +R+PRW ++HKF ++A T + ID+Q+GRTG +TPVARL+PV +GG +T Sbjct: 314 AQQNELGFVSRAPRWAVAHKFPAQEALTEIQAIDVQVGRTGAITPVARLKPVFVGGVTVT 373 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN+D I +D+RVGD V V+RAG+VIP+VV +++ +R D + Sbjct: 374 NATLHNQDEIDR-----------KDVRVGDTVSVRRAGDVIPEVVAVVLEKRPADTVAYR 422 Query: 430 ----FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 CP+C S V+R + A RCTGGL CSAQ+ + + HF SR A +IEG Sbjct: 423 LLEAINHQCPVCGSHVIRQEDE------AVARCTGGLFCSAQRKQAVLHFASRRAIDIEG 476 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG++ +D I ADI+ L + ++ + S N+ +++ Sbjct: 477 LGEKLVDQLVD----GAHIHTLADIYRL------DLATLSSLDRMAEKSAKNIIKALDAS 526 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + +L RFI++LGIR+VG A+ LA+Y+ S Q D L +VP VG Sbjct: 527 KATTLARFIYALGIRNVGEATAKDLARYFGSLQALLAA----------DIEQLQQVPDVG 576 Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 I+A++I +F P N ++ L + + + K LV TGTL + R Sbjct: 577 PIVAESIRQFLSEPHNQQVIQDLQDVGLHWTESDGAGTQQGVLTGKTLVLTGTLPTMSRD 636 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 +A+ + G V+ +S+KTD ++ G+ GSKL KAQ+LGV +++E L LL+ ++ Sbjct: 637 QAKALIEAAGGKVAGSVSKKTDFVVAGEEAGSKLTKAQELGVAVLDENGLLALLEDKQSS 696 Query: 725 LRIHDD 730 HDD Sbjct: 697 ---HDD 699 >gi|289208742|ref|YP_003460808.1| DNA ligase, NAD-dependent [Thioalkalivibrio sp. K90mix] gi|288944373|gb|ADC72072.1| DNA ligase, NAD-dependent [Thioalkalivibrio sp. K90mix] Length = 697 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 257/721 (35%), Positives = 382/721 (52%), Gaps = 57/721 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + + L ++I +H+ YY P + D+E+DAL R + + PDL P+ P Sbjct: 17 EVGERIEQLRRQIEHHNYRYYVLDDPEVSDAEFDALMRELEQLEADHPDLV---TPDSPT 73 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFFT 129 ++GG V H +P LSL + +++R F R+ K+ + + + Sbjct: 74 QRVGGAPAAGFDTVRHRLPMLSLANGFESDEIRDFDRRVRERLAKQTGDPARAEQAVAYM 133 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV----LSLNIPEII 185 EPK+DG I++ YE G+ V AA RGDG +GEDV+ +R + IP + + P ++ Sbjct: 134 AEPKLDGLAISLIYENGRLVQAATRGDGETGEDVTGNVRTVRPIPLHLGDRYTDDAPGVL 193 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEV++ ++DF LN + A G++ + NPRNAA+G LR+L+P R L+FF + +G Sbjct: 194 EVRGEVFMRRSDFERLNQGLEADGQRGFMNPRNAAAGSLRQLDPKVTARRPLSFFAYSVG 253 Query: 245 KTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 Q L + LGFPV + G ++YY + R L Y+IDG+V Sbjct: 254 HVEGGTLPDTQSGTLDWLHRLGFPVCPERAVLDGVEGCLAYYERLAERRRELDYEIDGIV 313 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YKVD + Q+QLG +R+PRW I+HKF ++ +T L +D ++GRTG LTPVARLEPV + Sbjct: 314 YKVDSLADQQQLGFVSRAPRWAIAHKFPAEEQTTTLRAVDFRVGRTGALTPVARLEPVLV 373 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++NATLHN D I +DIR+GDRV+V+RAG+VIP+VV ER Sbjct: 374 GGVTVSNATLHNMDEIAR-----------KDIRIGDRVIVRRAGDVIPEVVGRAGGERPA 422 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 D + P+ CP C S + R A RCTGGL C AQ+ E LKHFVSR A +I Sbjct: 423 DTRAIEMPTRCPECDSHIERPEGE------AVARCTGGLVCPAQRREALKHFVSRRAMDI 476 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EG G++ ++ ++ PAD+F L + E + G NL +++ Sbjct: 477 EGFGEKLIEQLAD----GGIVQSPADLFALDTERL------EALERVGPKLAENLVNALE 526 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + R +L RFIF+LGIR VG AR+LA YY Q D +L VP Sbjct: 527 QARETTLARFIFALGIREVGEVTARNLATYYGDLDTLMQA----------DAEALQEVPD 576 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVS-----PSIGRHEKNVSSEIENKKLVFTGTL 658 VG I+A+ I F+ P N+ + AL + P+ EK ++ + V TG+ Sbjct: 577 VGPIVAEHIANFFAEPHNLEVIRALREAGVHWPDPPARPAAEKGETAPLAGNTYVLTGSF 636 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R +A+ + GA V+ +S+KT +I G +PGSK+ KA+ L + I+ + LL Sbjct: 637 DTMTREEAKAALEARGAKVTGSVSKKTTAVIAGTDPGSKVTKAESLDIPILGPDDLAQLL 696 Query: 719 Q 719 Sbjct: 697 A 697 >gi|227328979|ref|ZP_03833003.1| NAD-dependent DNA ligase LigA [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 684 Score = 567 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 255/727 (35%), Positives = 405/727 (55%), Gaps = 54/727 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 MK + P E + A ++ L + + +H+ Y+ P I D EYD L + ++ Sbjct: 1 MKPVKKEPAE---VNVAALRVAELRRVLRHHEYKYHVEDAPEIPDVEYDKLMQELKSLEA 57 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 A P+L S + P ++G + +V H +P LSL+ +++ E F RI Sbjct: 58 AHPELVTS---DSPTQRVGAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRL-- 112 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 K+ + + F E K+DG +++ YE+G V AA RGDG +GE++++ IR + IP L + Sbjct: 113 KNGDDLTFCCELKLDGLAVSLLYEEGVLVQAATRGDGTTGENITSNIRTVAAIPLRLEGD 172 Query: 181 I-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238 P +EVRGEV++ + F LN+E G K +ANPRNAA+G LR+L+P TR L F Sbjct: 173 NIPRRVEVRGEVFMKHSGFEKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITATRPLTF 232 Query: 239 FVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 F +G+G +E L + + G PV++ ++ ++ +Y +++ RS+L + Sbjct: 233 FCYGVGLLEGGVLPASHWERLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSSLGF 292 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+V KVD LQ++LG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVAR Sbjct: 293 DIDGVVVKVDSLELQERLGFVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVAR 352 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 LEPV + G +++NATLHN D I+ L +++GDRV+V+RAG+VIP++V I+ Sbjct: 353 LEPVAVAGVIVSNATLHNADEIERL-----------GLQIGDRVIVRRAGDVIPQIVGIV 401 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 +ER +P FP+ CP+C S V R A RCT GL C AQ+ E LKHFVS Sbjct: 402 ESERPETVRPILFPAACPVCGSDVERVEGE------AVTRCTAGLICGAQRKEALKHFVS 455 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R A ++EG+G + +D + E ++ PAD+F L S + + G S TN Sbjct: 456 RRALDVEGMGDKIIDQLVEKE----YVKTPADLFRL------SAGIMTGLDRMGPKSATN 505 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L +++ K ++ +L RF+++LGIR VG A +LA ++ S + D + Sbjct: 506 LVNALEKAKSTTLARFLYALGIRDVGESTAANLAAHFGSLEALFAA----------DEDA 555 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI------GRHEKNVSSEIENKK 651 L+ VP VG ++A + F + N + L +I + + + S K Sbjct: 556 LLEVPDVGKVVAAHVRHFLEEEHNQTVIRELTDPAGINIHWPEVQVVNVEEIDSPFAGKT 615 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 +V TG+L + R +A++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E Sbjct: 616 VVLTGSLSILSRDEAKDRLTALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDE 675 Query: 712 EQFLFLL 718 + + LL Sbjct: 676 AEMIRLL 682 >gi|187924439|ref|YP_001896081.1| DNA ligase, NAD-dependent [Burkholderia phytofirmans PsJN] gi|254781278|sp|B2T5K0|DNLJ_BURPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|187715633|gb|ACD16857.1| DNA ligase, NAD-dependent [Burkholderia phytofirmans PsJN] Length = 688 Score = 567 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 256/711 (36%), Positives = 388/711 (54%), Gaps = 49/711 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L E+ + YY +P + D+EYD L + ++I PDL P+ P + Sbjct: 15 AERAAWLRAELERANYAYYVLDQPDLPDAEYDKLFKELESIETEHPDLIV---PDSPTQR 71 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS---IFFTLEPKI 134 +GGE V H P LSL + ED+ F R+ K + + E K Sbjct: 72 VGGEAASGFEPVVHDQPMLSLNNGFADEDIVAFDKRVGDALGKNASEPPVPVDYAAELKF 131 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193 DG I++RY G FV A+ RGDG +GE+V+ +R I +IP L P +++VRGEV + Sbjct: 132 DGLAISLRYVDGAFVQASTRGDGTTGENVTENVRTIRSIPLKLKGKRVPHVLDVRGEVLM 191 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIFA 251 K DF LN+ A +K +ANPRNAA+G LR+L+ R L+FF +G+G Sbjct: 192 FKRDFERLNERQRAAEQKEFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLEGMEMP 251 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 E+L + LG PVN+ G++ +++ + R LPYDIDG+VYKV+ Sbjct: 252 ATHSELLDWYKELGLPVNSERAVVQGAEGLLGFFHGVGEKREKLPYDIDGVVYKVNRRDE 311 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNA Sbjct: 312 QDALGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNA 371 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHNED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA+ F P Sbjct: 372 TLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSALLDRRPSDAREFVMP 420 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+C S + R + A RCTGGL C AQ+ + L HF R A +I+GLG++ + Sbjct: 421 TQCPVCGSSIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKII 474 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 D + +R PAD+F + + + F + S NL DS+ K ++ +L Sbjct: 475 DQLVEQN----LVRTPADLFNI------GFATLAELDRFAEKSAQNLLDSLEKAKHTTLA 524 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RFI++LGIRHVG A+ LAK++ S +L+ V VG ++A++ Sbjct: 525 RFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SVEALLEVNDVGPVVAES 574 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 I +F+ N +E L + K + K +V TGTL + R +A+E Sbjct: 575 IHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPSLAREEAKE 634 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + GA V+ +S+KTD ++ G + GSKL KA++LGV +++E+ LL+ Sbjct: 635 MLEAAGAKVAGSVSKKTDYLVAGADAGSKLAKAEELGVPVLDEDGMRKLLE 685 >gi|312173113|emb|CBX81368.1| DNA ligase [Erwinia amylovora ATCC BAA-2158] Length = 670 Score = 567 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 244/714 (34%), Positives = 399/714 (55%), Gaps = 51/714 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E + +++ L + +++ Y+ P + D+EYD L + +P+L S + Sbjct: 1 MESLQDKITHLRTLLRHYEHQYHVLDAPTVPDAEYDRLMGELRELETQYPELLTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ ++ E F R+ + DD I F E K Sbjct: 58 PTQRVGAAPLSAFGQVRHEVPMLSLDNAFDEESYLAFNKRVQDRLKSTDD--ITFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG +++ YEKG+ V AA RGDG +GED++A +R I IP LS + IPE +EVRGEV+ Sbjct: 116 LDGLAVSLLYEKGQLVRAATRGDGTTGEDITANVRTIRAIPLRLSGDSIPERLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + F +N + + G+K +ANPRNAA+G LR+L+P R L FF +GLG Sbjct: 176 MPLAGFEQMNQQARSCGQKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGLGLLEGGEM 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + LQ+ + G PV++ VR +++ ++ +Y+++++ R TL +DIDG+V KVD Sbjct: 236 PRSHMARLQQFKAWGLPVSDRVRLSHSPAEVLDFYHQVEAARPTLGFDIDGVVIKVDSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW I+ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWAIAFKFPAQEQITTVRDVEFQVGRTGAMTPVARLEPVLVAGVMVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +++GDRV+++RAG+VIP+V+ ++ DA+ +F Sbjct: 356 ATLHNADEIERL-----------GLKIGDRVVIRRAGDVIPQVMSVVETG--DDAREIAF 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CPIC S + R RCTGGL C AQ+ LKHFVSR A +I+G+G++ Sbjct: 403 PTHCPICGSDIERVEGE------VVARCTGGLICGAQRKGALKHFVSRRALDIDGMGEKI 456 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D E ++ PA++F L K+ + G S N+ +++ K + + Sbjct: 457 IDQLVDKE----YVKNPAELFELTA------GKLTGLDRMGPKSAQNVVNALAKAKQTTF 506 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGI VG A +LA ++ + + D +L+ V VG ++A Sbjct: 507 ARFLYALGISEVGEATAANLAAHFGTLEALMTA----------DLDALMAVQDVGKVVAS 556 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + F N + L+ + + + + S K +V TG+L + R +A Sbjct: 557 HVRNFLDEESNREIIRLLVDKAGVNWPQVVVVKAGEIDSPFAGKTVVLTGSLSILSRDEA 616 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ + LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E++ + LL + Sbjct: 617 KDRLQALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEQEMIRLLGE 670 >gi|126668324|ref|ZP_01739283.1| DNA ligase, NAD-dependent [Marinobacter sp. ELB17] gi|126627241|gb|EAZ97879.1| DNA ligase, NAD-dependent [Marinobacter sp. ELB17] Length = 703 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 247/737 (33%), Positives = 392/737 (53%), Gaps = 67/737 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 R + L I+ H+ YY P + D+EYD L R A+ +P+LA + P Sbjct: 7 SVRDRVHQLRTTITDHNHHYYVLDDPQVPDAEYDRLFRGLQALEAEYPELATA---TSPT 63 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK--------------- 120 ++G + S +V H IP LSL+ ++ +DLR F R+ + Sbjct: 64 QRVGSAVETSFAEVIHRIPMLSLDNAFSADDLRDFDRRVRERLNRGNTAGEDSIREDSTA 123 Query: 121 ---------KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP 171 K++ +I + EPK+DG +++ Y+ G+ V AA RGDG++GED++A IR I Sbjct: 124 EEGSKEEDSKEERTIEYVCEPKLDGLAVSLHYQNGELVRAATRGDGYTGEDITANIRTIA 183 Query: 172 TIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230 ++P L + P+ +EVRGEVY+ + F LN + G K + NPRNAA+G LR+ + Sbjct: 184 SVPLTLRGGDFPQTVEVRGEVYMPRAGFDRLNQRLAGRGEKTFVNPRNAAAGSLRQKKSS 243 Query: 231 -DITRYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM 288 R L + + T E +E LQ++ GF +N + A + Y + Sbjct: 244 VTARRPLEMCAYSVAVTDESALPPTHWEGLQQVSEWGFRINPEMSLAIGADQCLEAYEAL 303 Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348 + R +LPY+IDG+V+KV+ LQ+QLG +R+PRW I+ KF ++ T + ++ Q+GR Sbjct: 304 MAKRDSLPYEIDGIVFKVNRLDLQQQLGFVSRAPRWAIAQKFPAQEELTVVESVEFQVGR 363 Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408 TG +TPVARL+PV +GG ++NATLHN D ++ L D+ +GD V ++RAG+ Sbjct: 364 TGAITPVARLKPVFVGGVTVSNATLHNMDEVRRL-----------DLHIGDTVFIRRAGD 412 Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 VIPKVV ++ N+R DA P+ CP C S VV+ RC+GGL C AQ+ Sbjct: 413 VIPKVVKVVQNKRPADAWVIELPAQCPACGSDVVQIEGE------VIARCSGGLFCPAQR 466 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 E ++H+ SR A +IEGLG + +D S+ + AD++ L + + Sbjct: 467 KEAIRHYASRKALDIEGLGDKWVDILVDSKK----VETIADLYRLCKADL------TVLE 516 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 GD S +NL +I+ R L RF+++LGIR VG A+ LA Y+ S + A+ Sbjct: 517 RMGDKSASNLIAAIDASRQPLLWRFLYALGIREVGEATAKGLAGYFGSLEAIAEA----- 571 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648 D +L V VG I+A + F++ P N ++ L + + S + Sbjct: 572 -----DESALQAVSDVGPIVAGHLRSFFEQPHNQEILQNLTQAGVIWQTQEITAASMPLH 626 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 + V TGT++++ R +A++ + LGA V+ +S+KT ++ G+ GSKL KAQQLGV++ Sbjct: 627 GQTWVLTGTMEQMTRDQAKQKLEGLGAKVAGSVSKKTACVVAGEAAGSKLAKAQQLGVEV 686 Query: 709 MNEEQFLFLLQQYNTTL 725 ++E+ L LL+ ++ + Sbjct: 687 LSEQGLLDLLRGHDVEV 703 >gi|172036733|ref|YP_001803234.1| DNA ligase [Cyanothece sp. ATCC 51142] gi|254781304|sp|B1WZL6|DNLJ_CYAA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|171698187|gb|ACB51168.1| DNA ligase [Cyanothece sp. ATCC 51142] Length = 676 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 229/715 (32%), Positives = 372/715 (52%), Gaps = 48/715 (6%) Query: 12 LSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ++I + ++ ++ L Q++ + YY PI+ D+ YD L R D++ P L Sbjct: 1 MTITPEIKQRVTQLRQQLQKANYAYYVLDDPIMEDAVYDQLYRELDSLEKEHPQLI---T 57 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P+ P ++G + VTH+IP SLE +N+E+L+ + R R ++K++ S+ + Sbjct: 58 PDSPTQRVGDQPASQFVSVTHNIPLYSLENAFNLEELKAWEKRWQRSYEKEEFTSVEYVC 117 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRG 189 E KIDG+ + + YE G FV RGDG +GE+++ +R I +IP N P I+EVRG Sbjct: 118 ELKIDGSALALTYENGLFVRGVTRGDGTTGEEITQNVRTIRSIPLKLNIDNPPPIVEVRG 177 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E ++ ++F +N E G +ANPRNAA+G LR+L+P + + F E Sbjct: 178 EAFLPLDEFDRINQEREEKGDALFANPRNAAAGTLRQLDPKIVDQRRLQFFAYTLHLEEA 237 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q+E L + GF VN + + +Y+ + ++ R LPY DG+V K++ + Sbjct: 238 EISSQWESLNYLENSGFLVNPHRKLCQFLDEVEAYFKQWETARKDLPYMTDGVVVKINNY 297 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQK LG + PRW I+ K+ ++A T + +I + +GRTG +TP+A +EPV++ G + Sbjct: 298 SLQKALGFTQKFPRWAIALKYPAEEAPTLVKNIVVNVGRTGAVTPMAVMEPVHLAGTTVQ 357 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN D I L DIRVGD V++++AGE+IP+VV ++ R P+ QP+ Sbjct: 358 KATLHNSDRIAQL-----------DIRVGDTVIIRKAGEIIPEVVRVLKELRPPNTQPYE 406 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C S ++R A RC L+C A L H+ SRDA +I GLG++ Sbjct: 407 MPDRCPECDSPLIRPSGE------AVIRCMN-LSCEAILRGSLVHWASRDALDIRGLGEK 459 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + ++ + AD++ L I N+ G S NL +I + Sbjct: 460 IVVLLIEN----GLVNSIADLYYLTPE------TIANLERMGSKSADNLIKAIEGSKQQP 509 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 R ++ LGIR+VG+ A L + + S +Q + SL V VG+ IA Sbjct: 510 FSRVLYGLGIRYVGSVTANLLVENFPSIDQLSQA----------SFASLSSVYGVGEEIA 559 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-----SEIENKKLVFTGTLQKIQRH 664 Q+I++++ +N ++ L K + ++ + K V TGTL + R+ Sbjct: 560 QSIIDWFSIEKNCDLIKQLKKVGLQLETTSSEQITVEPSLTPFSGKTFVITGTLPTLTRN 619 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A+ + Q G V+ +S+KTD ++VG+ GSKL +A++LG+ ++E L LL Sbjct: 620 EAKALIEQAGGKVTGSVSKKTDYLLVGEKAGSKLTQAEKLGINQLSEADLLRLLN 674 >gi|294677201|ref|YP_003577816.1| DNA ligase [Rhodobacter capsulatus SB 1003] gi|294476021|gb|ADE85409.1| DNA ligase (NAD(+)) [Rhodobacter capsulatus SB 1003] Length = 707 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 294/719 (40%), Positives = 432/719 (60%), Gaps = 17/719 (2%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M +++L+ +A E+ L I + Y+ P I D++YDALKRR AI Sbjct: 2 MSAAPFSDLDSLTRAEAEAEVPELVARIEAANHAYHTLDAPKISDADYDALKRRLAAIEA 61 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FPDLAR+ + P ++G + KV H I LSLE + D+ F R+ + Sbjct: 62 RFPDLARA---DSPTMRVGAAVAEGFGKVAHEIRMLSLENAFLDADVADFDGRMRSYLGL 118 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 ++++ T EPKIDG +++RYE G V AA RGDG GE+V+ R I IP+ L+ Sbjct: 119 GPESALPCTAEPKIDGLSLSLRYEDGLLVQAATRGDGEVGENVTENARTIADIPQRLTGA 178 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFF 239 P ++EVRGEVY+S DF ALN G K +ANPRNAA+G +R+L+ +R L FF Sbjct: 179 -PAVLEVRGEVYMSHADFAALNARQAERGDKTFANPRNAAAGSVRQLDARITASRPLKFF 237 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G SE + Q +++++ LGF N R ++++Y +++ R+TL YDI Sbjct: 238 AYSWGVLSEPLSDTQLGAIERLKALGFQTNPLTRLCADTAEMLAHYRAIEAQRATLGYDI 297 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKV++ +LQ +LG R+ +PRW I+HKF + A TRL I+IQ+GRTG L+PVARL Sbjct: 298 DGVVYKVNDLALQARLGFRSTTPRWAIAHKFPAELAWTRLEKIEIQVGRTGALSPVARLA 357 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG +++NATLHNEDYI GL + G+V+R G+DIR GD V V RAG+VIPKV D+ ++ Sbjct: 358 PVTVGGVVVSNATLHNEDYIAGLSSKGEVIRDGKDIREGDWVQVYRAGDVIPKVADVDLS 417 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R P AQPF FP CP C S +R+ A RCTGGL C AQ +E+LKHFVSR Sbjct: 418 RRDPAAQPFVFPHLCPECGSEALREEG------DAVRRCTGGLICPAQAVEKLKHFVSRA 471 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+IEGLG +Q++ F+K IR PA+IFTLQ R +++N G+G+ S NL+ Sbjct: 472 AFDIEGLGAKQVEAFYKD----GWIREPAEIFTLQARFGAGLQQLKNREGWGEKSAQNLF 527 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I ++R I L R IF+LGIRHVG A A +YL+++ F + + + +W L+ Sbjct: 528 QAIEEKRKIPLARLIFALGIRHVGESSAALFATHYLTWERFEAAMRAAVPGS-AEWQELL 586 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 + VG+ +A ++ + A++ L+ ++ + S + +VFTGTL+ Sbjct: 587 SIDGVGETLAASVTAAFHPGAERDAIDRLVTHLTVEPAV-PRASDSPVAGLTVVFTGTLE 645 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++ R +A+ LGA V+ +S KTDI++ G GSK +KA LGV++++EE ++ L+ Sbjct: 646 RMTRAEAKARAEALGAKVAGSVSAKTDILVAGPGAGSKAKKAADLGVRVIDEEAWIRLI 704 >gi|292488952|ref|YP_003531839.1| DNA ligase [Erwinia amylovora CFBP1430] gi|292900089|ref|YP_003539458.1| DNA ligase [Erwinia amylovora ATCC 49946] gi|291199937|emb|CBJ47061.1| DNA ligase [Erwinia amylovora ATCC 49946] gi|291554386|emb|CBA21816.1| DNA ligase [Erwinia amylovora CFBP1430] Length = 670 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 244/714 (34%), Positives = 398/714 (55%), Gaps = 51/714 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E + +++ L + +++ Y+ P + D+EYD L + +P+L S + Sbjct: 1 MESLQDKITHLRTLLRHYEHQYHVLDAPTVPDAEYDRLMGELRELETQYPELLTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ ++ E F R+ + DD I F E K Sbjct: 58 PTQRVGAAPLSAFGQVRHEVPMLSLDNAFDEESYLAFNKRVQDRLKSTDD--ITFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG +++ YEKG+ V AA RGDG +GED++A +R I IP LS + IPE +EVRGEV+ Sbjct: 116 LDGLAVSLLYEKGQLVRAATRGDGTTGEDITANVRTIRAIPLRLSGDSIPERLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + F +N + + G+K +ANPRNAA+G LR+L+P R L FF +GLG Sbjct: 176 MPLAGFEQMNQQARSCGQKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGLGLLEGGEM 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + LQ+ + G PV++ VR +++ ++ +Y+++++ R TL +DIDG+V KVD Sbjct: 236 PRSHMARLQQFKAWGLPVSDRVRLSHSPAEVLDFYHQVEAARPTLGFDIDGVVIKVDSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW I+ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWAIAFKFPAQEQITTVRDVEFQVGRTGAMTPVARLEPVLVAGVMVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +++GDRV+++RAG+VIP+V+ ++ DA +F Sbjct: 356 ATLHNADEIERL-----------GLKIGDRVVIRRAGDVIPQVMSVVETG--DDALEIAF 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CPIC S + R RCTGGL C AQ+ LKHFVSR A +I+G+G++ Sbjct: 403 PTHCPICGSDIERVEGE------VVARCTGGLICGAQRKGALKHFVSRRALDIDGMGEKI 456 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D E ++ PA++F L K+ + G S N+ +++ K + + Sbjct: 457 IDQLVDKE----YVKNPAELFELTA------GKLTGLDRMGPKSAQNVVNALAKAKQTTF 506 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGI VG A +LA ++ + + D +L+ V VG ++A Sbjct: 507 ARFLYALGISEVGEATAANLAAHFGTLEALMTA----------DLDALMAVQDVGKVVAS 556 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + F N + L+ + + + + S K +V TG+L + R +A Sbjct: 557 HVRNFLDEESNREIIRLLVDKAGVNWPQVVVVKAGEIDSPFAGKTVVLTGSLSILSRDEA 616 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ + LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E++ + LL + Sbjct: 617 KDRLQALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEQEMIRLLGE 670 >gi|152979719|ref|YP_001345348.1| NAD-dependent DNA ligase LigA [Actinobacillus succinogenes 130Z] gi|190359224|sp|A6VR16|DNLJ_ACTSZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|150841442|gb|ABR75413.1| DNA ligase, NAD-dependent [Actinobacillus succinogenes 130Z] Length = 672 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 259/710 (36%), Positives = 397/710 (55%), Gaps = 45/710 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + +++ L + +H+ Y+ P I DSEYD L R A+ P+L + Sbjct: 1 MTDIQNQINQLRNTLRHHEYQYHVLDNPEIPDSEYDRLFHRLKALEQQHPELI---SADS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++TH +P LSL+ +++ E+ F+ RI DN + F EPK Sbjct: 58 PTQRVGAKPLAGFAQITHELPMLSLDNVFSDEEFYAFVKRIQERLITLPDN-LEFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G+ V AA RGDG +GED++ IR I IP L + N P +EVRGEV+ Sbjct: 117 LDGLAVSILYENGRLVQAATRGDGTTGEDITLNIRTIRNIPLQLLTDNPPVRLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV-HGLGKTSEIF- 250 + + F LN+ +A G K +ANPRNAA+G LR+L+P ++ + + +G Sbjct: 177 MPQEGFDRLNEAALARGEKTFANPRNAAAGSLRQLDPKITSQRPLVWNAYSIGIAEGADL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 YE LQ ++ +G PVN +R ++ +Y ++ R L YDIDG V KV+E + Sbjct: 237 PPTHYERLQWLKSIGIPVNGEIRLCRGAENVLKFYRTIQEKRPELGYDIDGTVLKVNEIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+L+PV + G ++N Sbjct: 297 LQERLGFISKAPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLQPVFVAGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L DI +GD V+V+RAG+VIP+++ ++ + R P+A+P F Sbjct: 357 ATLHNGDEIARL-----------DIAIGDTVIVRRAGDVIPQIIGVVHDRRPPNAEPIIF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S +VR A RCTGGL C AQ+ E LKHFVSR A +I+G+G + Sbjct: 406 PTLCPVCHSAIVRIEGE------AVARCTGGLFCDAQRKESLKHFVSRRAMDIDGVGAKL 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E IR PAD+F L + + G+ S DS+ K + +L Sbjct: 460 IEQLVDRE----LIRTPADLFKL------DLITLMRLERMGEKSAQKALDSLEKAKKTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGIR VG A +LA ++ + D L V VG+++A Sbjct: 510 ARFIFALGIREVGEATALNLANFFKNLTALQTA----------DLEQLQAVSDVGEVVAN 559 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQEY 669 I F++ NI V L+ + EK V+ + + K +V TGTL ++ R++A+ Sbjct: 560 RIYVFWREQHNIDVVNDLIAQGVHWDDVEEKQVNENPFKEKTVVLTGTLSQMGRNEAKAL 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + Q+GA V+ +S KT I+I GD+ GSKL KAQ LGV +M+E +FL ++ Sbjct: 620 LQQMGAKVAGSVSAKTHIVIAGDSAGSKLSKAQDLGVAVMSEAEFLEIVN 669 >gi|319776649|ref|YP_004139137.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3047] gi|329124164|ref|ZP_08252711.1| NAD-dependent DNA ligase LigA [Haemophilus aegyptius ATCC 11116] gi|317451240|emb|CBY87473.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3047] gi|327467589|gb|EGF13087.1| NAD-dependent DNA ligase LigA [Haemophilus aegyptius ATCC 11116] Length = 670 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 243/709 (34%), Positives = 393/709 (55%), Gaps = 45/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S + Sbjct: 1 MKNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ ++ + F+ RI + F EPK Sbjct: 58 PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I Y G+ AA RGDG +GED++A IR I +P L + N P +EVRGEV+ Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250 + F LN + K +ANPRNAA+G LR+L+P ++ +G+G + Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ + Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGTITPVAKLEPVFVAGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ R +A+P F Sbjct: 357 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S+++R A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E I PAD+F L T + + G S N +S+ ++ +L Sbjct: 460 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGAKSAENALNSLENAKSTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGIR VG A +LA ++ + + L +VP VG+++A Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLDALKDA----------NLEELQQVPDVGEVVAN 559 Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F++ N+ VE L+ + ++ + ++K +V TGTL ++ R++A+ Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL + Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668 >gi|260363295|ref|ZP_05776162.1| DNA ligase (NAD+) [Vibrio parahaemolyticus K5030] gi|308113593|gb|EFO51133.1| DNA ligase (NAD+) [Vibrio parahaemolyticus K5030] Length = 655 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 247/696 (35%), Positives = 383/696 (55%), Gaps = 47/696 (6%) Query: 29 SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88 YH YY P I D+EYD L R I PDL + P ++GG+ + Sbjct: 2 HYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTV---DSPSQRVGGKPLSEFSQ 58 Query: 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148 VTH +P LSL+ ++ +L F R + + EPK+DG +++ YE G Sbjct: 59 VTHEVPMLSLDNAFDDSELDSFHKRAQDRIGGESIKQ--YCCEPKLDGLAVSLLYENGIL 116 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG +GE+++ +R I IP L + P +EVRGEV++ K F LN+ Sbjct: 117 VQAATRGDGTTGENITENVRTINAIPLKLRGDDWPARLEVRGEVFMPKAGFEKLNELARQ 176 Query: 208 VGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLG 265 G K + NPRNAA+G LR+L+ +R L+F+ + +G A YE +++ G Sbjct: 177 KGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGADLAASHYERFLQIKSWG 236 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 P+ ++ ++ + +YY + R LPY+IDG+V K+D+ ++Q++LG AR+PRW Sbjct: 237 LPMCPETKRVDSLADVKTYYQHILQRRDALPYEIDGVVIKIDDIAVQERLGFVARAPRWA 296 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 I++KF ++ T L +++ Q+GRTG +TPVA+LEPV +GG ++NATLHN D I+ L Sbjct: 297 IAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIERLQ-- 354 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 +++GD+V+++RAG+VIP+VV +I R A+ FP+ CP+C S V R Sbjct: 355 ---------VKIGDQVVIRRAGDVIPQVVSVIKERRPETARDIIFPTQCPVCGSHVERIE 405 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 A RCTGGL C AQ+ + LKHFVSR A +++GLG + ++ E + Sbjct: 406 GE------AVTRCTGGLVCQAQRKQALKHFVSRKALDVDGLGDKVIEQLVDRE----MVE 455 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 PAD+F L S + + G S N+ +++ K + +L RF++SLGIR VG Sbjct: 456 TPADLFKL------SAGVLTVLERMGPKSAQNIVNALEKSKLTTLPRFLYSLGIREVGEA 509 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 A +LA+++ S + LI V +G ++A+ I F++ +N V Sbjct: 510 TAANLAQHFKSLEAIQAATE----------EQLIAVQDIGVVVAKHITTFFEEEQNQAVV 559 Query: 626 EALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 + LL + P + E+ +E K +V TGTL ++ R +A+E + LGA V+ +S+ Sbjct: 560 QDLLVQGIHWPEVSAPEQGAELPLEGKTVVLTGTLSQLGRTEAKEALQSLGAKVTGSVSK 619 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 KTDI+ G+N GSKL KAQ+LG++I E+ L L+ Sbjct: 620 KTDILFAGENAGSKLAKAQELGIEIKTEQDLLELIN 655 >gi|124302218|gb|ABN05294.1| DNA ligase [Geobacillus sp. g] Length = 670 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 258/717 (35%), Positives = 395/717 (55%), Gaps = 54/717 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + +QA + + L + + + YY +P + D+EYD L + AI +P+L S Sbjct: 1 MDRQQAERRAAELRELLHRYGYEYYVLGRPSVPDAEYDRLMQELMAIEEQYPELKTS--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +IGG + KVTH +P +SL ++ DLR F R+ ++ + E Sbjct: 58 DSPTQRIGGPPLEAFRKVTHVVPMMSLANAFDEGDLRDFDRRVR-----QEVGEAAYVCE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG +GED++ +R I ++P L + +E RGE Sbjct: 113 LKIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLRTIRSLPLRLKEPVS--LEARGEA 170 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 ++ K FL LN+E A G + +ANPRNAA+G LR+L+P +R L+ FV+GL E+ Sbjct: 171 FMPKASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELG 230 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + E L ++ LGF VN R+ ++++ NE R LPY+IDG+V KVD F+ Sbjct: 231 IESHSEALDYLQALGFKVNPERRRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFA 290 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG A+SPRW I++KF ++ T L+ I++ +GRTG++TP A LEPV + G + Sbjct: 291 QQRELGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQR 350 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED+I+ +DIR+GD V++K+AG++IP+VV ++V+ R D PF Sbjct: 351 ATLHNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFVM 399 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ ERL HF SR A NIEGLG++ Sbjct: 400 PTHCPECESELVRLDGE------VALRCLNPK-CPAQLRERLIHFASRAAMNIEGLGEKV 452 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A + AD++ L + Q + G+ S TNL +I + SL Sbjct: 453 VTQLFN----AGLVHDVADLYRLTKEQLIG------LERMGEKSATNLLAAIEASKQNSL 502 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIR+VGA+ A+ LA+++ + + + L+ VP +G+ +A Sbjct: 503 ERLLFGLGIRYVGAKAAQLLAEHFETMERLEKATK----------EELMAVPEIGEKMAG 552 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 +I+ F+ P + L + E S K +V TG L + R++ Sbjct: 553 SIIAFFSQPEAAELLHELRLYGVNMAYKGPKRAAEAPADSAFAGKTVVLTGKLASMSRNE 612 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A+E + +LG V+ +SR TDI+I G++ GSKLEKAQQLG++I +E +FL + + Sbjct: 613 AKEEIERLGGRVTGSVSRSTDIVIAGEDAGSKLEKAQQLGIEIWDESRFLQEINRGK 669 >gi|90416525|ref|ZP_01224456.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2207] gi|90331724|gb|EAS46952.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2207] Length = 677 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 263/713 (36%), Positives = 396/713 (55%), Gaps = 44/713 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +EQ R E L+ E++ H+ YY +P I DSEYD RR I P+L + Sbjct: 5 LEQVRAEYEQLKDELNQHNHRYYVLDEPTIPDSEYDRSMRRLQDIEQQHPELL---SDDS 61 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG S +V+H++P LSL+ ++ E+L F RI KDD I + EPK Sbjct: 62 PSQRVGGAALPSFSQVSHAVPMLSLDNAFSEEELEAFDRRISDRLNYKDDQQIDYVCEPK 121 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG +++ Y +G V A RGDG GED++A +R I +IP L+ + IPE++EVRGE+Y Sbjct: 122 LDGVAVSLLYNQGLLVRGATRGDGKVGEDITANVRTINSIPLRLNGDGIPELLEVRGEIY 181 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIF 250 + + F +N IA G KP+ NPRNAA+G LR+L+ +R L + +G+ Sbjct: 182 LPRGGFDKINAAAIAKGDKPFVNPRNAAAGSLRQLDSKITASRPLEMCAYSVGQFQGGET 241 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 ML+ + GF +N V +YY M+ R LPYDIDG+VYKV++ Sbjct: 242 PDSHLNMLKALGSWGFKINTYVEAVQGIAACEAYYERMQKRRDQLPYDIDGIVYKVNDLG 301 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG A++PRW I+ KF ++ T+L+D++ Q+GRTG LTPVARL PV +GG ++N Sbjct: 302 LQQRLGFVAKAPRWAIARKFPAQEEMTQLVDVEFQVGRTGALTPVARLAPVFVGGVTVSN 361 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L + +GD V+++RAG+VIPKV ++++ R +AQP F Sbjct: 362 ATLHNGDEIARL-----------GLCIGDTVIIRRAGDVIPKVAAVVLDRRPENAQPIVF 410 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+CQS V R A RC+GGL C AQ E +KHF SR A +I+GLG + Sbjct: 411 PENCPVCQSSVRRVEGE------AVARCSGGLFCGAQSKEAIKHFASRKAMDIDGLGDKL 464 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ I PAD++ L S TKI ++ G+ S NL DSI R +L Sbjct: 465 VELLVDR----GLIYSPADLYEL------SATKIADLERMGEKSAQNLIDSIAVSRQTTL 514 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +F+F+LGIR VG ++LA+ + S + + + +L+ V +G ++A Sbjct: 515 AKFLFALGIREVGEATGQTLARNFGSLEAIIEA----------EQDALLEVDDIGPVVAY 564 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEY 669 I +F++NP N+ + AL + S ++ + V TG ++ + R +A++ Sbjct: 565 YIRDFFRNPDNLSIINALRESGVSWDDIDITAQDSQPLKGQTWVLTGGMEIMSRAEAKDR 624 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + +LGA V+ +S KT ++ G GSKL KAQ L + + +EEQFL L+ + Sbjct: 625 LQELGAKVAGSVSAKTSQVVAGPGAGSKLTKAQSLDIPVFDEEQFLAFLEGHK 677 >gi|83951899|ref|ZP_00960631.1| DNA ligase, NAD-dependent [Roseovarius nubinhibens ISM] gi|83836905|gb|EAP76202.1| DNA ligase, NAD-dependent [Roseovarius nubinhibens ISM] Length = 748 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 303/760 (39%), Positives = 438/760 (57%), Gaps = 59/760 (7%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 + +E L+ + AR EL+ L + + Y+ P I D+EYDALK+R I FP+ Sbjct: 3 ETTAVERLTEDAARAELARLADLLQRANAAYHGADAPEISDAEYDALKQRNAEIEARFPE 62 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 L R + P ++G + KV H I LSL + D+ F RI ++ Sbjct: 63 LKRD---DSPSEQVGAAPSEGFGKVAHEIRMLSLGNAFADGDVADFDERIRKYLGLGSGA 119 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 ++ +T EPKIDG +++RYE+GK V AA RGDG GE+V+A R + IP+ +S PE+ Sbjct: 120 ALAYTAEPKIDGLSLSLRYEQGKLVQAATRGDGAVGENVTANARTVEDIPQEISGA-PEV 178 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243 +EVRGEVY+S DF ALN A G KP+ANPRNAA+G LR+L+P R L FF + Sbjct: 179 LEVRGEVYMSHADFEALNARQEAAGAKPFANPRNAAAGSLRQLDPGVTAARPLKFFAYAW 238 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G S A+ Q + ++ LGFPVN R+ + ++++Y E++ R+TL YDIDG+V Sbjct: 239 GALSAPLAETQMGAIARLGALGFPVNPLTRRCESVGEMIAHYREIEQGRATLGYDIDGVV 298 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YKVD+ +LQ +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV + Sbjct: 299 YKVDDLALQARLGFRSTTPRWAIAHKFPAELAWTRLEGIDIQVGRTGALSPVARLAPVTV 358 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +++NATLHNEDYI G DA G +RGG+DIRVGD V V RAG+VIPK+ D+ + +R Sbjct: 359 GGVVVSNATLHNEDYIAGRDAKGGEIRGGKDIRVGDWVQVYRAGDVIPKIADVDLAKRPE 418 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 A+ F FP+ CP C S +R+ A RC+GGL C AQ +E+LKHFVSR AF+I Sbjct: 419 GAERFDFPTRCPECGSEAIREEG------DAVRRCSGGLICPAQAVEKLKHFVSRAAFDI 472 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGLG +Q++ F++ I+ PADIFTLQ R +++N G+G+ S NL+ +I Sbjct: 473 EGLGAKQVEQFYRD----GWIKAPADIFTLQERYGAGLQQLKNREGWGEKSANNLFAAIE 528 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN------------------ 585 ++R I L + IF+LGIRH G AR LA +Y +Q A+ I+ Sbjct: 529 EKRRIPLAKLIFALGIRHAGEVAARDLALHYRDWQAMAEAIDLARPAARAHRAADEAEEA 588 Query: 586 -------------------------NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 ++ A W LI V +G ++ ++ + + N + Sbjct: 589 ERQAAGAEGRRARVSETRAAAVADCDVPAEAAAAWADLIAVDGIGAVLGLSLSDAFANDQ 648 Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680 A++ L+ + + S + K +VFTG+L+K+ R +A+ LGA VS Sbjct: 649 ERAAIDTLVAGLDI-VAPDAPAADSPVAGKTVVFTGSLEKMTRAEAKARAESLGAKVSGS 707 Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +S KTDI++ G GSK KA +LG++ ++E+ +L L+ Sbjct: 708 VSAKTDILVAGPGAGSKATKAAELGIETLDEDGWLALIGD 747 >gi|261496584|ref|ZP_05992964.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307787|gb|EEY09110.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2 str. OVINE] Length = 685 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 260/707 (36%), Positives = 402/707 (56%), Gaps = 46/707 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + +++ ++ Q + ++ Y+ P + D+EYD L + P+L + P Sbjct: 17 ELVEKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLEWQHPELI---SADSPT 73 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G + +VTH IP LSL+ ++ EDL F+ R+ + + F EPK+D Sbjct: 74 QRVGAKPLAGFAQVTHEIPMLSLDNAFSDEDLDGFLRRMESYITASPSQ-LEFCCEPKLD 132 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYIS 194 G ++I YE G AA RGDG +GE+++A IR I IP + N P +EVRGEV++ Sbjct: 133 GLAVSILYENGILTRAATRGDGTTGEEITANIRTIRNIPLKLNTTNPPARLEVRGEVFMP 192 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGKTSEIFA 251 ++ F LN++ +A G K +ANPRNAA+G LR+L+P + N + G+ ++ + Sbjct: 193 QSGFNELNEKALAKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELP 252 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +E LQ ++ LG PVNN +R +++YY E+++ R TL YDIDG V KV++ +L Sbjct: 253 ATHFERLQWLKSLGIPVNNEIRLVQGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIAL 312 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+QLG +RS RW I++KF ++ T L ++D Q+GRTG +TPVA+LEPV + G ++NA Sbjct: 313 QEQLGFISRSSRWAIAYKFPAQEEMTILKEVDFQVGRTGAITPVAKLEPVFVAGVTVSNA 372 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I+ L I +GD V+++RAG+VIP++ +++ R +A+ FP Sbjct: 373 TLHNGDEIERL-----------GIVIGDTVIIRRAGDVIPQITGVVLERRPENAKKIEFP 421 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CPIC S V R A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ + Sbjct: 422 TACPICHSAVTRVEGE------AVARCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLI 475 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + E I PAD+F L T + + G+ S N +SI K +N +L Sbjct: 476 EQLMARE----LIETPADLFKL------DHTTLMRLERMGEKSAQNALNSIEKAKNTTLP 525 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RF+FSLGIR VG A +LA ++ S + Q + L V VG+++A Sbjct: 526 RFLFSLGIREVGEATALNLANHFGSLEAIRQAT----------FEQLKEVQDVGEVVANR 575 Query: 612 IVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 IV F+Q P N+ VE L+ + + V + +++K +V TGTL ++ R +A+ + Sbjct: 576 IVSFWQEPHNVEVVEDLIAQGVRWENVVKAEIVDNPLKDKNVVLTGTLTQLTRDEAKALL 635 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 LG VS +S KTD +I G+ GSKL KAQ+LG++I++E+QF+ L Sbjct: 636 QSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILSEQQFIEL 682 >gi|157961514|ref|YP_001501548.1| DNA ligase, NAD-dependent [Shewanella pealeana ATCC 700345] gi|190359287|sp|A8H376|DNLJ_SHEPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157846514|gb|ABV87013.1| DNA ligase, NAD-dependent [Shewanella pealeana ATCC 700345] Length = 668 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 380/711 (53%), Gaps = 50/711 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + E++ L E++ H+ YY P I D+EYD L R A+ P+ R P+ Sbjct: 1 MPAIQNEIAQLTAELNQHNYRYYVDDSPSIPDAEYDRLLNRLKALETEHPEFCR---PDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE ++ H P LSL+ +++ ++ F RI K + + EPK Sbjct: 58 PTQRVGGEALAKFEQIKHLKPMLSLDNVFDEQEFTAFNQRIVD----KTGKDLSYCCEPK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192 +DG ++I Y G F AA RGDG +GED++ +R I +IP L N P ++EVRGEV Sbjct: 114 LDGLAVSIVYRDGVFERAATRGDGQTGEDITENVRTIKSIPLTLRGDNFPPLVEVRGEVI 173 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT---SE 248 + F ALN+ G K + NPRNAA+G LR+L+ +R L F+ + LG + Sbjct: 174 MPHKAFDALNERARVKGDKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPETW 233 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 A Y L+++R G PV+ VR T +++YY +++ RS+L ++IDG+V KV++ Sbjct: 234 ELADSHYGQLEQLRSWGVPVSQEVRGCETVAEVMAYYYDIQQRRSSLEFEIDGVVVKVNQ 293 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q LG A++PRW + KF ++ T L +D Q+GRTG +TPVARL+PV +GG + Sbjct: 294 IAHQLSLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTV 353 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I L ++VGD ++++RAG+VIP++V ++ +R DA+ Sbjct: 354 SNATLHNADEIARL-----------GVKVGDTIIIRRAGDVIPQIVAVVAEKRPDDAKDI 402 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CP+C S V R A RCTGGL C AQ+ E +KHF SR A +I+G+G Sbjct: 403 VFPAHCPVCDSEVERVEGE------AVTRCTGGLFCEAQRKEAIKHFASRKALDIDGMGD 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E + PAD+F L + + + G S T L +I + Sbjct: 457 KVVEQLIDKE----LVESPADLFRLTA------SAMTMLERMGMKSATKLVAAIEVAKQT 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + RF+++LGIR VG A +LA Y+ + + I+V VG I+ Sbjct: 507 TFARFLYALGIREVGEATAANLAAYFKTLEALKAA----------SAEEFIKVDDVGTIV 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 A + F P N+ ++ L++ ++ + V TGTL ++ R+ A+ Sbjct: 557 AAHLAHFLAQPHNLEVIDKLVEAGIHWPAVEEVAEEDLSLKGQTWVLTGTLTQLNRNDAK 616 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+ TD ++ G GSKL KAQ+LGVK+++EE + +L Sbjct: 617 AKLQALGAKVAGSVSKNTDCLVAGAAAGSKLTKAQELGVKVIDEEALIAIL 667 >gi|304317508|ref|YP_003852653.1| DNA ligase, NAD-dependent [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779010|gb|ADL69569.1| DNA ligase, NAD-dependent [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 659 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 231/710 (32%), Positives = 377/710 (53%), Gaps = 52/710 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++IE+ + L+ ++++H+ YY +P I D EYD + R + P+ P Sbjct: 1 MTIEE---RIKELKDKLNHHNYMYYVLDRPEISDYEYDMMMRELIKLEEEHPEFK---TP 54 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GGE TH + SL ++ +LR F R+ + + +E Sbjct: 55 DSPTQRVGGEPVKEFEPFTHVVVMQSLANAFSEGELRDFDRRVRSSVG-----DVEYVVE 109 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG + + YE G F + RGDG GE+V+ ++ I +IP L N+ + VRGEV Sbjct: 110 LKIDGLSVELIYENGIFTIGSTRGDGFVGENVTNNLKTIKSIPLRLKDNLN--LIVRGEV 167 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 ++ + F LN+E G +ANPRNAA+G LR+LNP R L+ FV L + + Sbjct: 168 FMPRASFEKLNEERELNGESLFANPRNAAAGSLRQLNPKITAKRDLDIFVFNLQRIEGVE 227 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K E L+ ++ GF V+ +++ ++ N +++IR +LPYD DG V KV++ Sbjct: 228 LKTHVEALEFLKEQGFKVSPHLKKCKNIDEVIEDINYIRTIRDSLPYDTDGAVVKVNDLE 287 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ LG + PRW I+ K+ ++ T++ DI +Q+GRTG LTP A LEPV I G++++ Sbjct: 288 KREILGSTVKDPRWAIAFKYPAERQKTKVKDIIVQVGRTGALTPTAILEPVKIAGSIVSR 347 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNEDYIK +DIR+GD V++++AGE+IP+VV ++V +R + F Sbjct: 348 ATLHNEDYIK-----------EKDIRIGDTVIIQKAGEIIPEVVSVVVEDRKGHEKNFFM 396 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C + VR A RCTG L C A+ + HF S+DA +I+GLG Sbjct: 397 PDTCPECGATTVRLPGE------AVTRCTG-LNCPAKLKRGIIHFASKDAMDIDGLGPAV 449 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + + I AD++ L+ + GD SV NL ++I + + L Sbjct: 450 IGQLLDN----HLIHNIADLYYLKYDDLIK------LDRMGDKSVKNLLNAIEESKGRDL 499 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +R IF LGI +G++ A LA ++ + + + + L + VG +A Sbjct: 500 DRVIFGLGIDLIGSKAASILANHFKTMDSLEEA----------SFDELTNIEEVGPKMAD 549 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +I+ F++ +N ++ L + + + +N S+ + V TGTL R +A++ + Sbjct: 550 SIIAFFKEKQNKEILDKLKEAGVNMVKKKSENTSNIFDGLTFVLTGTLSNYTRDEAKKLI 609 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G V+ +S+KT+ ++ G +PGSKL KAQQLGVK+++EE+F +L+Q Sbjct: 610 EERGGKVTGSVSKKTNYVVAGTDPGSKLSKAQQLGVKVIDEEEFENMLKQ 659 >gi|68057854|gb|AAX88107.1| DNA ligase [Haemophilus influenzae 86-028NP] Length = 679 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 244/709 (34%), Positives = 394/709 (55%), Gaps = 45/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S + Sbjct: 10 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 66 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ ++ + F+ RI + F EPK Sbjct: 67 PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I Y G+ AA RGDG +GED++A IR I +P L + N P +EVRGEV+ Sbjct: 126 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 185 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250 + F LN + K +ANPRNAA+G LR+L+P ++ +G+G I Sbjct: 186 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGIDL 245 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y+ LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ + Sbjct: 246 PTTHYDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 305 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 306 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 365 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ R +A+P F Sbjct: 366 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 414 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S+++R A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 415 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 468 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E I PAD+F L T + + G S N +S+ ++ +L Sbjct: 469 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGAKSAENALNSLENAKSTTL 518 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +RFIF+LGIR VG A +LA ++ + + L +VP VG+++A Sbjct: 519 DRFIFALGIREVGEATALNLANHFKTLDALKDA----------NLEELQQVPDVGEVVAN 568 Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F++ N+ VE L+ + ++ + ++K +V TGTL ++ R++A+ Sbjct: 569 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 628 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL + Sbjct: 629 LQQLGAKVSGSVSSKTDFVIAGDGAGSKLAKAQELNITVLTEEEFLAQI 677 >gi|161761269|ref|YP_248767.2| NAD-dependent DNA ligase LigA [Haemophilus influenzae 86-028NP] gi|166215835|sp|Q4QLJ0|DNLJ_HAEI8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|309973429|gb|ADO96630.1| NAD-dependent DNA ligase [Haemophilus influenzae R2846] Length = 670 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 244/709 (34%), Positives = 394/709 (55%), Gaps = 45/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S + Sbjct: 1 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ ++ + F+ RI + F EPK Sbjct: 58 PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I Y G+ AA RGDG +GED++A IR I +P L + N P +EVRGEV+ Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250 + F LN + K +ANPRNAA+G LR+L+P ++ +G+G I Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGIDL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y+ LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ + Sbjct: 237 PTTHYDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ R +A+P F Sbjct: 357 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S+++R A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E I PAD+F L T + + G S N +S+ ++ +L Sbjct: 460 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGAKSAENALNSLENAKSTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +RFIF+LGIR VG A +LA ++ + + L +VP VG+++A Sbjct: 510 DRFIFALGIREVGEATALNLANHFKTLDALKDA----------NLEELQQVPDVGEVVAN 559 Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F++ N+ VE L+ + ++ + ++K +V TGTL ++ R++A+ Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL + Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDGAGSKLAKAQELNITVLTEEEFLAQI 668 >gi|291613759|ref|YP_003523916.1| DNA ligase, NAD-dependent [Sideroxydans lithotrophicus ES-1] gi|291583871|gb|ADE11529.1| DNA ligase, NAD-dependent [Sideroxydans lithotrophicus ES-1] Length = 701 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 251/738 (34%), Positives = 395/738 (53%), Gaps = 64/738 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + + + L ++I+ +D YY P I D+EYD L R A+ P+L S Sbjct: 1 MINQDVTRRAALLRKQIAEYDYWYYVKDMPRIPDAEYDKLFRELQALEAQHPELLAS--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQK-KDDNSIFF 128 + P ++GG+ V H++P LS+ +I D F R+ R ++D I + Sbjct: 58 DSPTQRVGGKPLDMFQPVRHAVPMLSIRTETDISDQGAIAFDARVRRELGLNENDPPIEY 117 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 E K DG + +RYE+G+ V AA RGDG +GEDV+ +R I IP L P ++EVR Sbjct: 118 VCELKFDGLALNLRYEQGRLVQAATRGDGETGEDVTQNVRTIHQIPLSLEGMCPGVLEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-- 245 GEVY+++ DF N+ G NPRN A+G +R+L+P R L FF +GLG+ Sbjct: 178 GEVYMARPDFERYNERQRQQGLPTLVNPRNGAAGSIRQLDPALAARRPLKFFAYGLGEKV 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + + +L ++ GFPV++ R + G+V ++ ++++R +LP+DIDG+VYK Sbjct: 238 EGWDWRETHKGVLDQLEAWGFPVSHECRVVHGAQGLVEFHRRIEAMRDSLPFDIDGVVYK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ +LQ++LG +R PRW ++HKF ++ TRL I+IQ+GRTG LTPVA+LEPV +GG Sbjct: 298 VNSIALQEKLGFVSREPRWAVAHKFPAEEQVTRLNGIEIQVGRTGKLTPVAKLEPVFVGG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++NATLHNE I+ + I +GD V+V+RAG+VIP+VV ++ + Sbjct: 358 TTVSNATLHNEGEIRR-----------KGIHIGDMVIVRRAGDVIPEVVGVVPTMKVEPT 406 Query: 426 QP------------------FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467 P F P+ CP+C S VVR+ A RCTGGL C+AQ Sbjct: 407 IPPSNTINLELTAPSPTLSAFMMPTSCPVCGSHVVREEGE------ADARCTGGLFCAAQ 460 Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527 + + + HF R A +IEGLG + +D I + L + ++ + + Sbjct: 461 RKQAILHFAGRRAMDIEGLGDKLVDQLVDEN-------IIHSLSDLYDEKVLNSQTLAAL 513 Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587 + S N+ D++ K ++ +L RF+F+LGIRHVG A+ LA+++ + Q Sbjct: 514 DRMAEKSAQNIVDALEKSKSTALNRFLFALGIRHVGESTAKDLARHFGKLEAIMQA---- 569 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SS 645 + L+ VP VG ++AQ+IV+F+ N V+ L + + HE + Sbjct: 570 ------NVEQLLAVPDVGPVVAQSIVDFFGEAHNREVVQQL-RILGVHWAEHEGSSVREL 622 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 + K V TGTL + R +A+ + LGA V+ +S+KTD ++ G GSKL+KA++L Sbjct: 623 PLSGKTFVLTGTLANLSRDEAKSRLEALGAKVAGSVSKKTDCVVAGVEAGSKLDKARELN 682 Query: 706 VKIMNEEQFLFLLQQYNT 723 V + +E+Q L++Y Sbjct: 683 VPVWDEQQLFDQLKEYEK 700 >gi|254360665|ref|ZP_04976814.1| DNA ligase (NAD(+)) [Mannheimia haemolytica PHL213] gi|153091205|gb|EDN73210.1| DNA ligase (NAD(+)) [Mannheimia haemolytica PHL213] Length = 685 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 259/707 (36%), Positives = 401/707 (56%), Gaps = 46/707 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + +++ ++ Q + ++ Y+ P + D+EYD L + P+L + P Sbjct: 17 ELVEKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLEWQHPELI---SADSPT 73 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G + +VTH IP LSL+ ++ EDL F+ R+ + + F EPK+D Sbjct: 74 QRVGAKPLAGFAQVTHEIPMLSLDNAFSDEDLDGFLRRMESYITASPSQ-LEFCCEPKLD 132 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYIS 194 G ++I YE G AA RGDG +GE+++A IR I IP + N P +EVRGEV++ Sbjct: 133 GLAVSILYENGILTRAATRGDGTTGEEITANIRTIRNIPLKLNTTNPPARLEVRGEVFMP 192 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGKTSEIFA 251 ++ F LN++ +A G K +ANPRNAA+G LR+L+P + N + G+ ++ + Sbjct: 193 QSGFNELNEKALAKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELP 252 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +E LQ ++ LG PVNN +R +++YY E+++ R TL YDIDG V KV++ +L Sbjct: 253 ATHFERLQWLKSLGIPVNNEIRLVQGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIAL 312 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+QLG +RS RW I++KF ++ T L ++ Q+GRTG +TPVA+LEPV + G ++NA Sbjct: 313 QEQLGFISRSSRWAIAYKFPAQEEMTILKEVGFQVGRTGAITPVAKLEPVFVAGVTVSNA 372 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I+ L I +GD V+++RAG+VIP++ +++ R +A+ FP Sbjct: 373 TLHNGDEIERL-----------GIVIGDTVIIRRAGDVIPQITGVMLERRPENAKKIEFP 421 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CPIC S V R A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ + Sbjct: 422 TACPICHSAVTRVEGE------AVARCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLI 475 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + E I PAD+F L T + + G+ S N +SI K +N +L Sbjct: 476 EQLMARE----LIETPADLFKL------DHTTLMRLERMGEKSAQNALNSIEKAKNTTLP 525 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RF+FSLGIR VG A +LA ++ S + Q + L V VG+++A Sbjct: 526 RFLFSLGIREVGEATALNLANHFGSLEAIRQAT----------FEQLKEVQDVGEVVANR 575 Query: 612 IVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 IV F+Q P N+ VE L+ + + V + +++K +V TGTL ++ R +A+ + Sbjct: 576 IVSFWQEPHNVEVVEDLIAQGVRWENVVKAEIVDNPLKDKNVVLTGTLTQLTRDEAKALL 635 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 LG VS +S KTD +I G+ GSKL KAQ+LG++I++E+QF+ L Sbjct: 636 QSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILSEQQFIEL 682 >gi|144899097|emb|CAM75961.1| NAD-dependent DNA ligase [Magnetospirillum gryphiswaldense MSR-1] Length = 693 Score = 565 bits (1456), Expect = e-158, Method: Composition-based stats. Identities = 289/716 (40%), Positives = 426/716 (59%), Gaps = 30/716 (4%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I I+AL+ +AR E S+L +++ D Y+Q P + D+ YDA K R AI FP+LA Sbjct: 3 IEIDALTPFEARIEASALREKLIRWDLAYHQADAPEVDDATYDAAKLRLLAIEARFPELA 62 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P KIG KV H +P LSL+ ++ +D+R+F RI RF D I Sbjct: 63 AG----SPTAKIGAPAAEGFGKVRHGVPMLSLDNAFSEDDVREFEGRIRRFLALPPDQII 118 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT--IPRVLSLNIPEI 184 F EPKIDG I++RYE G+FV AA RGDG GEDV+A IR + + P++ Sbjct: 119 AFVAEPKIDGLSISLRYENGQFVRAATRGDGSEGEDVTANIRTLIRRGKIPERFDDAPDL 178 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 IEVRGE+Y++K DFLALN A G KP+ANPRNAA+G LR+LNP +R L+ F + L Sbjct: 179 IEVRGEIYMTKADFLALNQRQEAAGDKPFANPRNAAAGSLRQLNPRVTASRELSTFFYAL 238 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVR-QANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G+ + I +E L ++ GFP N ++ Y ++ +R++L +DIDG Sbjct: 239 GEHTTIKQNTHFEFLNQLTKWGFPCALQYISLYNNIDEMIQGYKNLQDLRASLDFDIDGY 298 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 VYKV+ F Q++LG +RSPRW I+HKF +QA+T L I+IQ+GRTG LTPVA L PVN Sbjct: 299 VYKVNRFDWQQRLGFVSRSPRWAIAHKFPAEQATTLLERIEIQVGRTGALTPVAHLTPVN 358 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 +GG +++ A+LHNED I + +R GD V+++RAG+VIP+VV +++++ Sbjct: 359 VGGVVVSRASLHNEDEIIR-----------KGVREGDTVIIQRAGDVIPQVVGVVMDKPR 407 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 A F FP CP+C S VR + RC+GGLAC AQ ERL+HFVSR+AF+ Sbjct: 408 G-AADFLFPDTCPVCGSHAVRTGDE------VIRRCSGGLACKAQVKERLRHFVSRNAFD 460 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEGLG + +DF + E I PADIF L+ +++N G+G+ V L+ +I Sbjct: 461 IEGLGDENIDFLCEGE----WINKPADIFRLEAANAGRLQRLQNYKGWGEKKVAKLFAAI 516 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 RR I+LER I++LGIR VG A+ LA++Y S+ + + + + ND + LI + Sbjct: 517 TARRTIALERLIYALGIRQVGEATAKRLARHYGSFAVWRESMLAAVPRENDSYHDLISIE 576 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +G +A I+ F+ N+ A++ L +++ + + + +S + K +VFTG L + Sbjct: 577 DIGPAVANDILAFFAEDHNVAALDDLAAQLTINDAQKIEAGNSPVSGKSVVFTGELVAMT 636 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+ LGA V +S+KTD ++ G GSKL +A++LG+ +++E+Q+L L+ Sbjct: 637 RAEAKAKAEMLGAKVVGSVSKKTDYVVAGPGAGSKLAEAEKLGLTVLSEQQWLELI 692 >gi|261493319|ref|ZP_05989845.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261310963|gb|EEY12140.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 685 Score = 565 bits (1455), Expect = e-158, Method: Composition-based stats. Identities = 259/707 (36%), Positives = 402/707 (56%), Gaps = 46/707 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + +++ ++ Q + ++ Y+ P + D+EYD L + P+L + P Sbjct: 17 ELVEKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLEWQHPELI---SADSPT 73 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G + +VTH IP LSL+ ++ EDL F+ R+ + + F EPK+D Sbjct: 74 QRVGAKPLAGFAQVTHEIPMLSLDNAFSDEDLDGFLRRMESYITASPSQ-LEFCCEPKLD 132 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYIS 194 G ++I YE G AA RGDG +GE+++A IR I IP + N P +EVRGEV++ Sbjct: 133 GLAVSILYENGILTRAATRGDGTTGEEITANIRTIRNIPLKLNTTNPPARLEVRGEVFMP 192 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGKTSEIFA 251 ++ F LN++ +A G K ++NPRNAA+G LR+L+P + N + G+ ++ + Sbjct: 193 QSGFNELNEKALAKGEKTFSNPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELP 252 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +E LQ ++ LG PVNN +R +++YY E+++ R TL YDIDG V KV++ +L Sbjct: 253 ATHFERLQWLKSLGIPVNNEIRLVQGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIAL 312 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+QLG +RS RW I++KF ++ T L ++D Q+GRTG +TPVA+LEPV + G ++NA Sbjct: 313 QEQLGFISRSSRWAIAYKFPAQEEMTILKEVDFQVGRTGAITPVAKLEPVFVAGVTVSNA 372 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I+ L I +GD V+++RAG+VIP++ +++ R +A+ FP Sbjct: 373 TLHNGDEIERL-----------GIVIGDTVIIRRAGDVIPQITGVVLERRPENAKKIEFP 421 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CPIC S V R A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ + Sbjct: 422 TACPICHSAVTRVEGE------AVARCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLI 475 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + E I PAD+F L T + + G+ S N +SI K +N +L Sbjct: 476 EQLMARE----LIETPADLFKL------DHTTLMRLERMGEKSAQNALNSIEKAKNTTLP 525 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RF+FSLGIR VG A +LA ++ S + Q + L V VG+++A Sbjct: 526 RFLFSLGIREVGEATALNLANHFGSLEAIRQAT----------FEQLKEVQDVGEVVANR 575 Query: 612 IVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 IV F+Q P N+ VE L+ + + V + +++K +V TGTL ++ R +A+ + Sbjct: 576 IVSFWQEPHNVEVVEDLIAQGVRWENVVKAEIVDNPLKDKNVVLTGTLTQLTRDEAKALL 635 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 LG VS +S KTD +I G+ GSKL KAQ+LG++I++E+QF+ L Sbjct: 636 QSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILSEQQFIEL 682 >gi|56479083|ref|YP_160672.1| NAD-dependent DNA ligase [Aromatoleum aromaticum EbN1] gi|81356392|sp|Q5NYU3|DNLJ_AZOSE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56315126|emb|CAI09771.1| NAD-dependent DNA ligase [Aromatoleum aromaticum EbN1] Length = 681 Score = 565 bits (1455), Expect = e-158, Method: Composition-based stats. Identities = 259/714 (36%), Positives = 375/714 (52%), Gaps = 55/714 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L +E+ HD YY P + D+EYD L R DA+ P+L P+ P ++ Sbjct: 9 ERAAQLRRELEAHDHAYYVLDAPTVPDAEYDRLFRELDALERRHPELLV---PDSPTRRV 65 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIED-----LRKFITRIYRFWQKKDD-NSIFFTLEP 132 GG L V H++P LS I D + F TR+ + + + E Sbjct: 66 GGAPVPGLVPVRHAVPMLS---IRTETDTTSGGVIAFDTRVRNALELGPHAPPVEYLGEL 122 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K DG I++RYE G V AA RGDG++GEDV+ +R I IP L P +IEVRGE+Y Sbjct: 123 KFDGLAISLRYENGMLVRAATRGDGYTGEDVTHSVRTIRQIPLRLPGRPPALIEVRGEIY 182 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS---- 247 + ++ F LN G K + NPRNAA+G +R+L+ R +FF +G G+ Sbjct: 183 MRRDAFERLNARQSETGGKVFVNPRNAAAGAVRQLDARIAARRPLSFFAYGFGEIGESGG 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 Q EML + LG PV A+ G++++++ + + R +LPYDIDG+VYKV+ Sbjct: 243 WNMPATQGEMLDALDALGIPVCEHRVVASGPDGLIAFHDRIAAARDSLPYDIDGVVYKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 F LQ++LG R PRW ++HK+ ++ T L+DI+IQ+GRTG LTPVARL+PV +GG Sbjct: 303 RFDLQRRLGFVTREPRWAVAHKYPAQEEITELVDIEIQVGRTGALTPVARLKPVFVGGVT 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +TNATLHNE+ I+ + + +GD+V+V+RAG+VIP++V +V R+ +P Sbjct: 363 VTNATLHNEEEIQR-----------KGLLIGDQVIVRRAGDVIPQIVAPVVERRNGSERP 411 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P CP+C S + + A RC+GGL C AQ+ + L HF R A +IEGLG Sbjct: 412 FVMPQTCPVCGSHAEKQPDE------AVTRCSGGLFCPAQRKQALLHFAGRRAMDIEGLG 465 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + +D + PAD++ L K+ N+ D S NL +I K R+ Sbjct: 466 DKLVDQLVD----GGIVSTPADLYRL------GLVKLANLPRMADKSAANLLAAIEKSRH 515 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L RFIF+LGIR+VG AR LA+++ S D L +V VG I Sbjct: 516 ATLARFIFALGIRNVGEATARELARHFGSLDALMDA----------DIERLQQVADVGPI 565 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 +A +I F+ N +E L G K V TG L + R A Sbjct: 566 VAHSIAGFFAEMHNREVIEQLRAAGVHWDEGVPAVAADGPASGKTFVLTGALPTMSRDDA 625 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + G VS +S+KTD ++ G GSKL KAQ+LGV I++E+ LL+Q Sbjct: 626 KALIESHGGKVSGSVSKKTDYVVAGAEAGSKLAKAQELGVAILDEDGLRRLLEQ 679 >gi|170727191|ref|YP_001761217.1| DNA ligase, NAD-dependent [Shewanella woodyi ATCC 51908] gi|254781418|sp|B1KJT5|DNLJ_SHEWM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169812538|gb|ACA87122.1| DNA ligase, NAD-dependent [Shewanella woodyi ATCC 51908] Length = 670 Score = 565 bits (1455), Expect = e-158, Method: Composition-based stats. Identities = 262/710 (36%), Positives = 380/710 (53%), Gaps = 50/710 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A +E+ L + I+ H+ YY P + D+EYD L R + P L P P Sbjct: 3 AIEEIKQLTETINEHNHSYYVEDSPSVPDAEYDRLINRLKQLEGENPHLCL---PTSPTQ 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG ++TH P LSL+ +++ E+ F RI K + F EPK+DG Sbjct: 60 RVGGMALAKFDQITHLKPMLSLDNVFSEEEFEAFYKRISD----KTSEAPTFCCEPKLDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195 ++I Y G + AA RGDG +GED+S +R I +IP L N P ++EVRGEV + K Sbjct: 116 LAVSILYRDGVYERAATRGDGTTGEDISENVRTILSIPLKLRGDNFPPLLEVRGEVIMPK 175 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA--- 251 F ALND A G K + NPRNAA+G LR+L+ +R L F+ + LG Sbjct: 176 KAFDALNDRARAKGEKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPETWALA 235 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Y+ L ++R GFPV+ V+Q +V+YY ++ + R +L Y+IDG+V KVD Sbjct: 236 DTHYDQLMQLRAWGFPVSAEVKQCGDVSSVVAYYTDIMTRRDSLDYEIDGVVIKVDSIEH 295 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q QLG A++PRW + KF ++ T L +D Q+GRTG +TPVARL+PV +GG ++NA Sbjct: 296 QGQLGFVAKAPRWATAFKFPAQEEVTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNA 355 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I L ++VGD V+V+RAG+VIP++V I+ ++R DA+ FP Sbjct: 356 TLHNADEIARL-----------GVKVGDTVIVRRAGDVIPQIVAIVADKRPDDAREIEFP 404 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C S V R A RCTGGL C AQ+ E +KHF SR A +I+G+G + + Sbjct: 405 DTCPVCNSMVERVEGE------AVARCTGGLFCEAQRKEAIKHFASRKALDIDGMGDKVV 458 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + E + PAD+F L + I + G S TNL +I + + Sbjct: 459 EQLIDKE----LVESPADLFKLTA------SAITMLDRMGMKSATNLVAAIEVAKTTTFS 508 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RF++ LGIR VG A +LA Y+ + D S I+V VG I+AQ Sbjct: 509 RFLYGLGIREVGEATAANLANYFKTLDKLKAA----------DAESFIKVDDVGTIVAQH 558 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYV 670 + F+ P N+ V+ L++ E S ++ + V TGTL ++ R+ A+ + Sbjct: 559 LTHFFAQPHNLEVVDKLIEAGVNWPEIEEVAEESLSLKGQTWVLTGTLTQLNRNDAKARL 618 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA V+ +S+ TD ++ G+ GSKL KAQ LGVK+++EE L LL Sbjct: 619 QALGAKVAGSVSKNTDCLVAGEAAGSKLTKAQDLGVKVIDEEALLQLLSD 668 >gi|134094553|ref|YP_001099628.1| DNA ligase [Herminiimonas arsenicoxydans] gi|166215813|sp|A4G4R4|DNLJ_HERAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|133738456|emb|CAL61501.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Herminiimonas arsenicoxydans] Length = 696 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 252/716 (35%), Positives = 370/716 (51%), Gaps = 46/716 (6%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P E + L E++ H+ YY PI+ D+EYD L R A+ + P+L Sbjct: 18 PKEIPDASDPSARAAWLRSELNRHNYAYYVLDNPIVPDAEYDQLFRELQALEASHPELLV 77 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + P ++G + VTHS+P LSL + ED+ F R+ ++ + Sbjct: 78 F---DSPTQRVGALALTAFPPVTHSVPMLSLGNGFEDEDVLAFDKRVSEGLNSRE--EVE 132 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIE 186 + E K DG I +RYE G V AA RGDG +GE+V+A IR + IP + N P++++ Sbjct: 133 YATELKFDGLAINLRYEDGVLVQAATRGDGATGENVTANIRTVRAIPLRLHTNNPPKVLD 192 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245 VRGEV + K D LN G K +ANPRNAA+G LR+L+ R L FF +G+G Sbjct: 193 VRGEVMMYKADLAKLNARQRDAGAKEFANPRNAAAGSLRQLDSRITAQRSLRFFSYGIGL 252 Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 +L LG PV + G++ +Y R LPY+IDG+VY Sbjct: 253 LEGADMPASHSALLDWYAELGIPVCSERAVVRGVQGLLEFYKATSEKRPQLPYEIDGVVY 312 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ Q QLG +R+PR+ I+HKF ++A T + DI++Q+GRTG +TPVARL PV +G Sbjct: 313 KVNRVDQQLQLGFVSRAPRFAIAHKFPAEEALTTVQDIEVQVGRTGAITPVARLAPVLVG 372 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +TNATLHNED ++ +DI++GD V+V+RAG+VIP+VV + R Sbjct: 373 GVTVTNATLHNEDEVRR-----------KDIQIGDTVIVRRAGDVIPEVVAFVPERRPAS 421 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNI 483 A+PF PS CP+C S +VR + A RC+G + C+AQ+ L HFVSR A ++ Sbjct: 422 ARPFIMPSSCPVCGSPIVRLEDE------AIARCSGGWVKCAAQRKGGLLHFVSRRAMDV 475 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGLG Q ++ I AD++ L + + D S N+ D++ Sbjct: 476 EGLGDQLVEQLVDK----HIITTAADLYKL------GFRALAELDRMADKSAQNVLDALE 525 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K + +L RFI++LGIRHVG A+ LA+++ + Q L+ V Sbjct: 526 KSKRTTLARFIYALGIRHVGEATAKELARHFGNLDALLQA----------SPEQLLEVAD 575 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 +G ++A +I F+ + NI +E L +N + K V TGTL + R Sbjct: 576 IGPVVAASITAFFTDAMNIELIEQLRAAGVTWPEHVVENRPRPLAGKTFVLTGTLPTLSR 635 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A E + G V+ +S+KT ++ G GSKL KA++LGV I++E L LL Sbjct: 636 DAAAEKIEAAGGKVAGSVSKKTSYVVAGAEAGSKLAKAEELGVTILDETGLLQLLD 691 >gi|90410985|ref|ZP_01218999.1| DNA ligase [Photobacterium profundum 3TCK] gi|90328198|gb|EAS44509.1| DNA ligase [Photobacterium profundum 3TCK] Length = 697 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 243/716 (33%), Positives = 396/716 (55%), Gaps = 48/716 (6%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 +S + +++L +L ++++YH YY P I D+EYD + ++ A+ P+L Sbjct: 25 SEMSTD-IQQQLDTLREQLAYHGHRYYVEDNPEIPDAEYDRMMQQLLALEADHPELM--- 80 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 + P ++GG S +V H +P LSL+ +N E+L F R+ + + Sbjct: 81 SVDSPSQRVGGMPLDSFTQVKHELPMLSLDNAFNDEELHAFEKRLLDRL--ITAGQVSYC 138 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188 EPK+DG +++ YE G V AA RGDG +GE+++ +R I +IP L P +EVR Sbjct: 139 CEPKLDGLAVSLMYENGVLVQAATRGDGATGENITTNVRTIRSIPLKLQGEGWPLRLEVR 198 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247 GEV++ K F LN + G K +ANPRNAA+G LR+L+ +F+ + +G Sbjct: 199 GEVFMPKKGFDELNARALKKGDKAFANPRNAAAGSLRQLDSKIAATRPLSFYAYSVGVVE 258 Query: 248 -EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 A QY+ L +++ G P+ +RQ T +++YY ++ R +L Y+IDG+V KV Sbjct: 259 GMDLADSQYDRLVQLKGWGIPMCPEIRQLKTIKDVIAYYQDIGERRQSLSYEIDGVVIKV 318 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q+QLG AR+PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEP+ +GG Sbjct: 319 DDVETQEQLGFVARAPRWAIAYKFPAQEEMTLLNNVEFQVGRTGAITPVAKLEPIFVGGV 378 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++NATLHN D + L + +GD V+++RAG+VIP++V ++ + R +A Sbjct: 379 TVSNATLHNADEVARL-----------GVMIGDTVIIRRAGDVIPQIVSVVESRRPANAL 427 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 FP CP+C+S V R A RC+GGL C AQ+ E LKHFVSR A +++G Sbjct: 428 SIIFPETCPVCKSNVERVEGE------AVARCSGGLFCQAQRKEALKHFVSRKALDVDGC 481 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++ ++ E + PA +F L S + + G S L DS+ + Sbjct: 482 GEKVIEQLVDRE----MVTTPAGLFKL------SAGVVTVLDRMGPKSAQKLVDSLANSK 531 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI+SLGIR VG A +LA ++ + + L+ VP VG+ Sbjct: 532 ETTLPRFIYSLGIREVGEATAANLANHFETLEAITAASK----------EQLLVVPDVGE 581 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 ++A ++ F++ N+ VE L+ P+I + E+ V ++ K +V TG+L ++ R Sbjct: 582 VVANNLLNFFREAHNMDVVEDLIAVGIHWPAIEKPEEGVELPLDGKVVVLTGSLSQLTRS 641 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ + LGA V+ +S+KTD+++ G+ GSKL KAQ+L ++I +E+ + L+ + Sbjct: 642 DAKAALQALGAKVTGSVSKKTDLLVAGEAAGSKLTKAQELDIEIWDEQALVDLMNR 697 >gi|310823543|ref|YP_003955901.1| DNA ligase [Stigmatella aurantiaca DW4/3-1] gi|309396615|gb|ADO74074.1| DNA ligase [Stigmatella aurantiaca DW4/3-1] Length = 673 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 252/714 (35%), Positives = 400/714 (56%), Gaps = 52/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + ++ A L +E+++H+ YY P + D+EYD L R + FP LA P Sbjct: 1 MDLKTAETRARDLRRELAHHNHRYYVLDSPEVSDAEYDRLMRELQGLEAQFPALA---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GGE KV H P LSL ++N E+ +F RI + D + + E Sbjct: 58 DSPTQRVGGEAAEKFAKVVHRAPMLSLANVFNDEEFTEFDERIRKVVGPAD---VTYVCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP----RVLSLNIPEIIEV 187 PK+DG IT+RYE G+F+ A RGDG +GEDV+ +R + +P + +P ++EV Sbjct: 115 PKLDGLAITLRYENGRFLQGATRGDGTTGEDVTGNLRTVRPLPLELLPEAGMAVPPVLEV 174 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEV+I K DF LN++ G +ANPRNAA+G LR+L+P +R L+ ++ + T Sbjct: 175 RGEVFIRKEDFKKLNEKREEEGEALFANPRNAAAGSLRQLDPKITASRPLSVSLYEIVPT 234 Query: 247 S-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 L+ ++ LG PVN+ R A G+ + Y R L +++DG+V K Sbjct: 235 EGVPAFDTHTAKLEYLQKLGLPVNHHER-AQGLEGVRAAYQAALKGRHALKFEVDGMVVK 293 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD +++LG+ ++SPRW +++KF ++ STR+ I++Q+GRTG LTPVA L+PV +GG Sbjct: 294 VDSEDQRRRLGQVSKSPRWAVAYKFPPEEESTRVEAIEVQVGRTGALTPVAHLKPVKVGG 353 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ ATLHNED ++ +D+R GD V V+RAG+VIP++V ++ N+R D+ Sbjct: 354 VTVSRATLHNEDELRR-----------KDVRQGDTVFVRRAGDVIPEIVSVVPNQRPADS 402 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 +P+ FP CP+C ++ V+D A RCTG +C AQ +E+++HF SR A +I+G Sbjct: 403 KPYEFPQHCPVCGAQAVKDEE------GAIIRCTGA-SCPAQLVEKVRHFASRPAMDIDG 455 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 +G + + ++ AD++ L R Q S + G+ S NL +I + Sbjct: 456 VGDKLAAQLV----ASGRVKTFADLYALTREQLLS------LERMGEKSADNLLAAIERS 505 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + + RF+++LGIRHVG A++LA+ + D +L RV VG Sbjct: 506 KQTTQRRFLYALGIRHVGEATAKALAEAFPEAPLLYTA----------DMEALTRVKDVG 555 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +AQ + F+Q P+N A++ALL + + N K +V TG + + R + Sbjct: 556 PTMAQVLHAFFQEPQNRAAIDALLAAGV-TPAPPQVNTGGPFAGKTVVLTGGMTGMSRDQ 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + + G VS +SRKTD ++ G++ GSKL+KAQ+LGV++++E+ FL LLQ Sbjct: 615 AKEEIERRGGKVSGSVSRKTDFVVAGEDAGSKLKKAQELGVRVLDEQAFLKLLQ 668 >gi|149203841|ref|ZP_01880810.1| DNA ligase, NAD-dependent [Roseovarius sp. TM1035] gi|149142958|gb|EDM31000.1| DNA ligase, NAD-dependent [Roseovarius sp. TM1035] Length = 717 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 293/715 (40%), Positives = 433/715 (60%), Gaps = 15/715 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + +E L+ +A+ EL L ++ + Y+ P I D+ YDALK R AI FP L Sbjct: 16 LAVEDLTESEAQAELGRLAALLAAANRAYHTEDAPEITDAAYDALKARNAAIEARFPTLK 75 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R + +++G KV HSI LSL + ED+ +F +RI R+ DD + Sbjct: 76 RD---DSASDQVGAAPLDGFAKVAHSIRMLSLGNAFEPEDVAEFDSRIRRYLGLPDDAPL 132 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 +T EPKIDG +++RY +G+ V AA RGDG GE+V+A R I IP L+ PEI+E Sbjct: 133 AYTAEPKIDGLSLSLRYVQGRLVQAATRGDGEVGENVTANARTITDIPESLTGA-PEILE 191 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY+S DF ALN K +ANPRNAA+G LR+L+ R L FF + G+ Sbjct: 192 VRGEVYMSHADFAALNARQAEKSDKQFANPRNAAAGSLRQLDAKITAARPLRFFAYSWGE 251 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S A+ Q + +++ LGF N + ++ +Y ++ R+TL YDIDG+VYK Sbjct: 252 VSAPLAETQMGAIARLKALGFQTNPLTVLCDGVEALLEHYARIEQARATLGYDIDGVVYK 311 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ LQ +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV +GG Sbjct: 312 VDDLGLQARLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGG 371 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHNEDYI G D+ G+V+RGG+DIRVGD V V RAG+VIPKV D+ +++R A Sbjct: 372 VVVSNATLHNEDYIAGRDSKGEVIRGGKDIRVGDWVQVYRAGDVIPKVADVDLSKRAEGA 431 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ FP+ CP C S VR+ A RC GGL C AQ +E+LKHFVSR AF+IEG Sbjct: 432 TPYVFPATCPECGSDAVREEG------DAVRRCVGGLICPAQAVEKLKHFVSRAAFDIEG 485 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG +Q++ F++ I+ PADIF LQ R + +++N G+G+ S NL+++I ++ Sbjct: 486 LGAKQVEQFYRD----GWIKEPADIFLLQERYGSGLQQLKNREGWGEKSAKNLFEAIEEK 541 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R I R +F+LGIRHVG + + +A+ Y ++ F ++ + +W L+ + VG Sbjct: 542 RKIPFGRLLFALGIRHVGEQASTLIARNYGTWDEFIAAMDGAKDYEGPEWERLLGIDGVG 601 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++A+A+V + P +++ L + ++ + S + K +VFTG+L+K+ R + Sbjct: 602 TVMARALVGAFAEPHERGSIDRLTEYLTVQEAARPRTDGSPVAGKTVVFTGSLEKMTRAE 661 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ LGA V+ +S KTD+++ G GSK +KAQ LG++ ++E+ +L L+ Sbjct: 662 AKARAEGLGAKVAGSVSAKTDLLVAGPGAGSKAKKAQDLGIETIDEDGWLTLIGD 716 >gi|145636448|ref|ZP_01792116.1| DNA ligase [Haemophilus influenzae PittHH] gi|145270273|gb|EDK10208.1| DNA ligase [Haemophilus influenzae PittHH] Length = 670 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 245/709 (34%), Positives = 394/709 (55%), Gaps = 45/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S + Sbjct: 1 MKNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ ++ + F+ RI + F EPK Sbjct: 58 PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I Y G+ AA RGDG +GED++A IR I +P L + N P +EVRGEV+ Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250 +S F LN + K +ANPRNAA+G LR+L+P ++ +G+G + Sbjct: 177 MSHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ + Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ R +A+P F Sbjct: 357 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S+++R A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E I PAD+F L T + + G S N +S+ ++ +L Sbjct: 460 IEQLVDRE----LIHTPADLFKL------DLTTLTRLDRMGTKSAENALNSLENAKSTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIFSLGIR VG A +LA ++ + + L +VP VG+++A Sbjct: 510 ARFIFSLGIREVGEATALNLANHFKTLDALKDA----------NLEELQQVPDVGEVVAN 559 Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F++ N+ VE L+ + ++ + ++K +V TGTL ++ R++A+ Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL + Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668 >gi|260580185|ref|ZP_05848015.1| DNA ligase, NAD-dependent [Haemophilus influenzae RdAW] gi|1574651|gb|AAC22753.1| DNA ligase (lig) [Haemophilus influenzae Rd KW20] gi|260093469|gb|EEW77402.1| DNA ligase, NAD-dependent [Haemophilus influenzae RdAW] Length = 679 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 243/709 (34%), Positives = 392/709 (55%), Gaps = 45/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S + Sbjct: 10 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 66 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ ++ + F+ RI + F EPK Sbjct: 67 PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I Y G+ AA RGDG +GED++A IR I +P L + N P +EVRGEV+ Sbjct: 126 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 185 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250 + F LN + K +ANPRNAA+G LR+L+P ++ +G+G + Sbjct: 186 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 245 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ + Sbjct: 246 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 305 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 306 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 365 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ R +A+P F Sbjct: 366 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 414 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S+++R A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 415 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 468 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E I PAD+F L T + + G S N +S+ ++ +L Sbjct: 469 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGAKSAENALNSLENAKSTTL 518 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGIR VG A +LA ++ + + L +VP VG+++A Sbjct: 519 ARFIFALGIREVGEATALNLANHFKTLDALKDA----------NLEELQQVPDVGEVVAN 568 Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F++ N+ VE L+ + ++ + ++K +V TGTL ++ R++A+ Sbjct: 569 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 628 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL + Sbjct: 629 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 677 >gi|30995424|ref|NP_439257.2| NAD-dependent DNA ligase LigA [Haemophilus influenzae Rd KW20] gi|145638086|ref|ZP_01793696.1| DNA ligase [Haemophilus influenzae PittII] gi|166214918|sp|P43813|DNLJ_HAEIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145272415|gb|EDK12322.1| DNA ligase [Haemophilus influenzae PittII] gi|309751252|gb|ADO81236.1| NAD-dependent DNA ligase [Haemophilus influenzae R2866] Length = 670 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 243/709 (34%), Positives = 392/709 (55%), Gaps = 45/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S + Sbjct: 1 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ ++ + F+ RI + F EPK Sbjct: 58 PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I Y G+ AA RGDG +GED++A IR I +P L + N P +EVRGEV+ Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250 + F LN + K +ANPRNAA+G LR+L+P ++ +G+G + Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ + Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ R +A+P F Sbjct: 357 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S+++R A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E I PAD+F L T + + G S N +S+ ++ +L Sbjct: 460 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGAKSAENALNSLENAKSTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGIR VG A +LA ++ + + L +VP VG+++A Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLDALKDA----------NLEELQQVPDVGEVVAN 559 Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F++ N+ VE L+ + ++ + ++K +V TGTL ++ R++A+ Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL + Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668 >gi|323495433|ref|ZP_08100510.1| NAD-dependent DNA ligase LigA [Vibrio brasiliensis LMG 20546] gi|323310356|gb|EGA63543.1| NAD-dependent DNA ligase LigA [Vibrio brasiliensis LMG 20546] Length = 669 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 253/711 (35%), Positives = 387/711 (54%), Gaps = 48/711 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S +Q +++L+ L + + YH YY P I D+EYD L R I P+L Sbjct: 1 MS-QQIQEKLNQLRESLHYHGVKYYVEDSPEIPDAEYDRLMRELMEIEAQHPELV---SL 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG V H IP LSL+ ++ +L F R+ + F E Sbjct: 57 DSPSQRVGGAPLDGFDSVRHEIPMLSLDNAFDDSELDAFHKRMSDRLSGTKLDV--FCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 PK+DG +++ Y G FV AA RGDG +GE+++ +R I IP L PE +EVRGE Sbjct: 115 PKLDGLAVSLLYVNGVFVQAATRGDGATGENITENVRTIKAIPLKLQGEGWPERLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249 V++ K F LN++ + G K + NPRNAA+G LR+L+ R L+F+ + +G Sbjct: 175 VFMPKEGFDKLNEQALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLSFYAYSVGVVEGA 234 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 ++ YE +++ G P+ R + +YY ++ + R LPY+IDG+V KVD Sbjct: 235 TLSESHYERFLQLKGWGLPMCPETRLVANLEEVKAYYQDILTRRDALPYEIDGVVIKVDS 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q+QLG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG + Sbjct: 295 IAAQEQLGFVARAPRWAIAYKFPAQEEITTLNDVEFQVGRTGAITPVAKLEPVFVGGVTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I+ L + VGD V+++RAG+VIP++V I+ + R +A+ Sbjct: 355 SNATLHNADEIERL-----------GVMVGDCVVIRRAGDVIPQIVSIVSDRRPENAREI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CP+C S V R A RC+GGL C AQ+ E LKHFVSR A +++GLG+ Sbjct: 404 VFPTNCPVCNSAVERVEGE------AVARCSGGLVCQAQRKEALKHFVSRKALDVDGLGE 457 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E + PAD+F L S I + G S N+ D++ K + Sbjct: 458 KVIEQLVDRE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVDALVKAKET 507 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF++SLGIR VG A +LAK++ + + + LI V +G I+ Sbjct: 508 TLPRFLYSLGIREVGEATAANLAKHFKTLEAVQAASH----------DDLIEVQDIGAIV 557 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A I F+ +N ++ L + P I +++ + K +V TG+L ++ R A Sbjct: 558 ASHITAFFAQDKNQMVIDDLRVQGVHWPDIEEKDQDAPQPLAGKVVVLTGSLSQLTRSDA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + + LGA V+ +S+KTDI+ G+N GSKL KAQ LG++I EE + L Sbjct: 618 KAALEGLGAKVTGSVSKKTDILFAGENAGSKLAKAQDLGIEIRTEEDLIAL 668 >gi|92112835|ref|YP_572763.1| DNA ligase, NAD-dependent [Chromohalobacter salexigens DSM 3043] gi|122990589|sp|Q1QZP4|DNLJ_CHRSD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91795925|gb|ABE58064.1| DNA ligase, NAD-dependent [Chromohalobacter salexigens DSM 3043] Length = 691 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 243/714 (34%), Positives = 384/714 (53%), Gaps = 44/714 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + R+ +L Q++ + YY P I D+EYDAL R ++ P+L P+ Sbjct: 5 PQAVRERADTLHQQLDDANYQYYVEDDPRITDAEYDALLRELQSLEAEHPELK---TPDS 61 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G +VTH++P LSL+ ++ +L F+ R+ + D +++ F EPK Sbjct: 62 PTQRVGAAPAERFEEVTHAVPMLSLDNAFDDAELAAFVKRVADKL-ECDGDTLAFCCEPK 120 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG + + YE G+ V A RGDG +GEDV+ +R I +IP L + IP +IEVRGEVY Sbjct: 121 LDGLAVALVYENGRLVQGATRGDGRTGEDVTLNLRTIRSIPLKLRGDSIPPLIEVRGEVY 180 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGK-TSEIF 250 + + F ALND G K +ANPRNAA+G LR+L+ + F + + + E Sbjct: 181 MRHSGFEALNDRARENGDKVFANPRNAAAGSLRQLDSSIAAARPLEFCAYQVARLEGEDD 240 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A + L+++R LGF + + G++ + + + R+ L YDIDG V KVD Sbjct: 241 AHSHSDYLKRLRTLGFRTSPLLDVVKGERGVIDFCHRLGEQRNGLDYDIDGAVIKVDSLR 300 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG +R+PRW I++K+ ++ +T L D+ Q+GR G LTPVA+LEPV + G + N Sbjct: 301 DQRELGFVSRAPRWAIAYKYPAQEQTTTLNDVVFQVGRVGTLTPVAKLEPVQVAGVTVAN 360 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP++V ++ ++R + Sbjct: 361 ATLHNMDEIERL-----------GVRIGDTVIVRRAGDVIPQIVGVVESQRPATTRAIEM 409 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S+ R A RC+GGL C AQ+ E LKHF SR A +I+GLG++ Sbjct: 410 PEHCPVCGSQTERLEGE------VAARCSGGLFCPAQRKEALKHFASRRALDIDGLGEKL 463 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E ++ PAD+F L+ + + + S NL +++ + +L Sbjct: 464 IDLLVERE----WVKTPADLFRLEAERL------AELPRLAEKSANNLVNALEAAKRTTL 513 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFI+++GIR VG A SLA+++ S Q ++ +L V VG ++A+ Sbjct: 514 ARFIYAIGIREVGEATAASLARHFGSLQALSEA----------SLEALEAVEDVGPVVAR 563 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I F++ P N +E L + + V TGTL+ + R + + Sbjct: 564 HIHTFFRQPHNQETLEDLQGVGVTWEEVEIAGRPQPLAGQTWVLTGTLESMTRDDGKARL 623 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 LGA VS +S+KT ++ G+ GSKLEKAQ LGV++++E +FL L + + Sbjct: 624 QALGAKVSGSVSKKTAGVVAGEAAGSKLEKAQNLGVEVIDEREFLQRLAHWESA 677 >gi|256822391|ref|YP_003146354.1| NAD-dependent DNA ligase [Kangiella koreensis DSM 16069] gi|256795930|gb|ACV26586.1| DNA ligase, NAD-dependent [Kangiella koreensis DSM 16069] Length = 667 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 251/708 (35%), Positives = 398/708 (56%), Gaps = 48/708 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + K ++ L + ++ YY P + D+EYD L R I P+L + Sbjct: 1 MSELEKRVAELRVTLDNYNHQYYVLDDPSVPDAEYDRLLRELQQIESEHPELI---SSDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + + +VTH +P LSL+ + ++L F R+ ++ I + EPK Sbjct: 58 PTQRVGAKPDNGFQEVTHELPMLSLDNAMSDDELVSFNKRVQDRLNTTEN--IEYVCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192 +DG +++ YE G+ V A RGDG +GE+++ +R I IP L PE IE+RGEV+ Sbjct: 116 LDGLAVSLLYENGQLVRGATRGDGTTGENITLNVRTIRAIPLKLRGTETPERIEIRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF- 250 + K F +LN+E G K +ANPRNAA+G LR+L+P+ R L+F+ + +G S+ F Sbjct: 176 MPKAVFESLNEEAREQGAKSFANPRNAAAGSLRQLDPSITAKRQLSFYAYSMGLVSDDFK 235 Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A ++ L++++ G PV++ ++ G ++Y+ + R +L Y+IDG+V KV+ Sbjct: 236 LANTHFDRLEQIKTFGLPVSSEIKLVKGAEGCLAYHQSISEKRDSLGYEIDGVVNKVNSI 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ++LG AR+PRW I+HKF ++ T+L+ +D Q+GRTG LTPVARLEPV++GG ++ Sbjct: 296 ELQEELGFVARAPRWAIAHKFPAQEEMTQLIGVDFQVGRTGALTPVARLEPVSVGGVTVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D IK L D R+GD V+++RAG+VIP+VV II+ +R +A+ Sbjct: 356 NATLHNMDEIKRL-----------DARIGDTVIIRRAGDVIPQVVSIILEKRPSNAEIIL 404 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP+C S V R AA RCTGGL CSAQ+ E +KHF SR A +I+GLG + Sbjct: 405 TPEQCPVCNSPVERTEGE------AAIRCTGGLICSAQRKEAIKHFASRKAMDIDGLGDK 458 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ F + ++ +D++ ++ + + G+ S NL ++ +N + Sbjct: 459 LVEIFAEK----GMVQSISDLYRIKAGDIAA------LDRMGEKSAENLIGALEHSKNTT 508 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L +F++SLGIR VG A+++A ++L+ + L VP VG I+A Sbjct: 509 LPKFLYSLGIREVGEVTAKNIAHHFLTLDGIIKASQ----------EELESVPDVGPIVA 558 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQE 668 I F+ N N+ +E L +K+ ++ K V TGTL+ I R +A+ Sbjct: 559 HHIRAFFDNVENLEQIEELKDLGVNWPDIKKKSDDELPLKGKTYVITGTLEGISRPEAKA 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + LGA VS +S KT +I G + GSKL+KAQ+LGV+++++ FL Sbjct: 619 KLEALGAKVSGSVSSKTTALIAGASAGSKLKKAQELGVEVLDQS-FLD 665 >gi|145630192|ref|ZP_01785974.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021] gi|144984473|gb|EDJ91896.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021] Length = 670 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 243/709 (34%), Positives = 394/709 (55%), Gaps = 45/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S + Sbjct: 1 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ ++ + F+ RI + F EPK Sbjct: 58 PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I Y G+ AA RGDG +GED++A IR I +P L + N P +EVRGEV+ Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250 + F LN + K +ANPRNAA+G LR+L+P ++ +G+G + Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y+ LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ + Sbjct: 237 PTTHYDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ R +A+P F Sbjct: 357 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S+++R A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E I PAD+F L T + + G S N +S+ ++ +L Sbjct: 460 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGAKSAENALNSLENAKSTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGIR VG A +LA ++ + + L +VP VG+++A Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLDTLKDA----------NLEELQQVPDVGEVVAN 559 Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F++ N+ VE L+++ ++ + ++K +V TGTL ++ R++A+ Sbjct: 560 RIFIFWREAHNVAVVEDLIEQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL + Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668 >gi|114327083|ref|YP_744240.1| NAD-dependent DNA ligase [Granulibacter bethesdensis CGDNIH1] gi|122327935|sp|Q0BV35|DNLJ_GRABC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|114315257|gb|ABI61317.1| NAD-dependent DNA ligase [Granulibacter bethesdensis CGDNIH1] Length = 700 Score = 564 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 277/716 (38%), Positives = 421/716 (58%), Gaps = 34/716 (4%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 L P EALS +AR EL L I+ DD YY+ P++ D++YDAL++R I FPD Sbjct: 11 LTPPEALSPAEARAELERLASRIAELDDAYYRDDAPLVTDADYDALRQRNAEIERLFPDA 70 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 N P N++G + + K+ H +P LSL+ +++ E+ +F R RF Sbjct: 71 ILK---NSPANRVGTAPSSAFAKIRHRVPMLSLDNVFDTEEFAEFCARARRFLNLPASP- 126 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 F EPKIDG I++ YE G AA RGDG GEDV+A +R + +P+ L P I Sbjct: 127 -RFVAEPKIDGLSISLTYENGILTRAATRGDGMEGEDVTANVRTLRDVPQTLHGEAPAFI 185 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 E+RGEV++SK FL LN+ +G+K +ANPRNAA+G LR+L+ + R L F + G Sbjct: 186 EIRGEVFMSKAAFLELNETQARLGQKIFANPRNAAAGSLRQLDASVTANRPLALFAYAQG 245 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 ++S A+ ++ L +++ GF VN + + ++ + + RSTLPYDIDG+V+ Sbjct: 246 ESSAPVAETHWDYLTRLKDWGFVVNPLSQLIEDENAAAAFTTRIAAGRSTLPYDIDGVVF 305 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 K+D+ SLQ++LG R+PRW + KF +QA+T L IDIQ+GRTG LTPVA L+ VN+G Sbjct: 306 KIDDLSLQRRLGFVGRAPRWATAWKFPAEQATTVLEKIDIQVGRTGALTPVAHLQAVNVG 365 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G L+T ATLHNED I +D+R GD V+++RAG+VIP++V +++ +R Sbjct: 366 GVLVTRATLHNEDEIAR-----------KDVREGDTVILQRAGDVIPQIVSVVLEKRPDG 414 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+PF+ CP+C S +R RCTGGL C AQ +ERL H VSR AF+I+ Sbjct: 415 ARPFAPLEHCPVCGSLAIRPPGE------VVRRCTGGLTCEAQVVERLIHMVSRPAFDID 468 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++ + F + + PADIF L R+ +I G+G +S NL +I Sbjct: 469 GLGEKSILEFHRD----GLVSGPADIFRLPARED----EIARRDGWGSLSARNLSQAIEA 520 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 RR+I +RF+++LGIR +G AR LA++Y S+ + ++ +D+ L+L + + Sbjct: 521 RRSIPFDRFLYALGIRRIGETNARLLARHYGSFTEWRTQMLAARQIGSDERLALGSITGI 580 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKI 661 G IA+ +V+F+ PRNI ++ L ++ + + S + K +VFTGTLQ + Sbjct: 581 GPTIAEELVDFFAEPRNIDTLDELAGMLTITAPSGGLSSAALDSPLNGKIIVFTGTLQAM 640 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 R +A+ +GA V+ +S+KTD ++ G + GSK +KA +LG++ ++EE++L L Sbjct: 641 TRPEAKARAESMGAKVTDSVSKKTDFVVTGADAGSKAKKAAELGIRTLSEEEWLAL 696 >gi|323705997|ref|ZP_08117567.1| DNA ligase, NAD-dependent [Thermoanaerobacterium xylanolyticum LX-11] gi|323534611|gb|EGB24392.1| DNA ligase, NAD-dependent [Thermoanaerobacterium xylanolyticum LX-11] Length = 659 Score = 564 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 230/705 (32%), Positives = 365/705 (51%), Gaps = 49/705 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 + L ++++H YY KP I D EYD + R + +P P+ P Sbjct: 3 IEDRIKELRDKLNHHSYMYYVLDKPEISDYEYDMMMRELIELEEKYPQFK---TPDSPTQ 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GGE TH +P SL ++ +LR F R+ + + +E KIDG Sbjct: 60 RVGGEPLKEFEPFTHVVPMQSLANAFSEGELRDFDRRVR-----ASVGDVEYVVEFKIDG 114 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + + YE G F + RGDG GE+V+ ++ I +IP L ++ + VRGEV++ K Sbjct: 115 LSVELIYENGFFTVGSTRGDGIIGENVTNNLKTIKSIPLRLKDDLN--LIVRGEVFMPKA 172 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255 F LN+E G +ANPRNAA+G LR+LNP R L+ FV L + I K Sbjct: 173 SFEKLNEERELNGESLFANPRNAAAGSLRQLNPKITAKRDLDIFVFNLQRIDGIELKTHA 232 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L+ ++ GF V+ ++ ++ N ++ IR +L Y+ DG V KV++ ++ L Sbjct: 233 EALEFLKYQGFKVSPHIKVCGNIDEVIEDINYIRDIRDSLSYETDGAVVKVNDLEKREIL 292 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+ PRW I+ K+ ++ T++ DI +Q+GRTG LTP A LEPV I G++++ ATLHN Sbjct: 293 GSTAKDPRWAIAFKYPTERQKTKVKDIVVQVGRTGALTPTAILEPVKIAGSIVSRATLHN 352 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 EDYIK +DIR+GD V++++AGE+IP+VV ++ ER + F P CP Sbjct: 353 EDYIK-----------EKDIRIGDTVIIQKAGEIIPEVVSVVAEERDGSEKFFIMPEVCP 401 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + VR K GL C A+ + HF S+DA +I+GLG + Sbjct: 402 ECGAATVRLPGESVTK-------CTGLNCPAKLKRGIIHFASKDAMDIDGLGPAVIGQLL 454 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + I +D++ L+ + GD S NL ++I + + L+R IF Sbjct: 455 DN----HLIHNISDLYYLKYDDLVK------LDRMGDKSAKNLINAIEESKGRDLDRLIF 504 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGI +G++ A LA ++ + ++ + + L + +G +A ++V F Sbjct: 505 GLGIDLIGSKAAGILASHFKTMESLEKAT----------FEELTEIEEIGPKMADSVVAF 554 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 ++ +N+ ++ L + NV+ + V TGTL+K R +A+ + + G Sbjct: 555 FKEKQNLDIIDRLKAAGVNMRKKDAINVNDNFKGLTFVLTGTLEKYTRDEAKRLIEERGG 614 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 V+ +S+KTD ++VG +PGSKL KAQ+LGVKI+NEEQF +L+Q Sbjct: 615 KVTGSVSKKTDYVVVGADPGSKLSKAQELGVKILNEEQFENMLKQ 659 >gi|315498681|ref|YP_004087485.1| DNA ligase, nad-dependent [Asticcacaulis excentricus CB 48] gi|315416693|gb|ADU13334.1| DNA ligase, NAD-dependent [Asticcacaulis excentricus CB 48] Length = 697 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 282/708 (39%), Positives = 404/708 (57%), Gaps = 22/708 (3%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + A+ + L EI +H D YY P + D+EYDAL++ A+ +PDL + Sbjct: 6 PDTAQTRHAQLSTEIKHHRDLYYNQEAPELTDAEYDALEQELRALEAQYPDL---HTVDS 62 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G E++ V H +P LSL+ + ED+ F I RF + + + F +EPK Sbjct: 63 PTEQVGAEISSKFAPVQHGVPMLSLDNAFAPEDVADFEKSIRRFLRLPPEEELAFAVEPK 122 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 IDG ++ Y GK V AA RGDG +GED++ +R I +P VLS PE IE+RGEVY Sbjct: 123 IDGLSCSLLYVNGKLVRAATRGDGRTGEDITENVRTIKDVPHVLSGRDHPERIEIRGEVY 182 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFA 251 DF A+N + G K +ANPRNAASG LR+L+ +R L FF + G+ S+ Sbjct: 183 YPLADFAAMNAKSAEEGGKVFANPRNAASGALRQLDATITASRPLRFFAYTWGEVSDPRF 242 Query: 252 -KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q E L K GF VN G++ Y ++ RS+L YDIDG+VYKVD Sbjct: 243 VTTQTEALAKFHEWGFQVNPRSATTENSDGLLKIYEAIQRDRSSLGYDIDGVVYKVDRLD 302 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG +RSPRW I+HKF +QA T L IDIQ+GR G LTPVARLEPVN+GG +++N Sbjct: 303 YQRRLGFVSRSPRWAIAHKFPAEQALTHLKAIDIQVGRIGTLTPVARLEPVNVGGVVVSN 362 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 TLHN D I +DIR+GD V V+RAG+VIP++V + ++ER +P+ F Sbjct: 363 VTLHNADEIAR-----------KDIRIGDLVRVQRAGDVIPQIVGVELSERQEGTEPYVF 411 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP V G+ A RC+G AC Q++E LK+ VSR +IEGLG++Q Sbjct: 412 PTVCPCPLKTAVARELNLKGEEGVARRCSGEHACPHQRVEYLKYVVSRKVLDIEGLGEKQ 471 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L F + IR PADIFTL+ R +TS T + N G G+ S NL+ +I RR + L Sbjct: 472 LQKFSEE----GLIREPADIFTLEARDKTSLTPLRNREGMGETSARNLFKAIEDRRQLPL 527 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +RFI +LG++ VG AR LA+ Y S F + + A + + +L + VG + Sbjct: 528 DRFIAALGVKGVGETTARLLARAYHSESTFRDAMIALAAGDEEVKAALDNMDQVGPSLVA 587 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 A++EF+ N N+ + ++S S + K +VFTGTL+K+ R +A+ Sbjct: 588 ALIEFFSNDHNVGIYMRFVAQLSVQDAE-AVAGDSAVSGKTVVFTGTLEKMTRDEAKAQA 646 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +LGA V+ +S KT I++ G GSKL+KA +LGV++M E+++L + Sbjct: 647 ERLGAKVAGSVSAKTHIVVAGPGAGSKLKKAAELGVQVMTEDEWLAFI 694 >gi|5733399|gb|AAD49562.1|AF126866_1 NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis] Length = 672 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 246/714 (34%), Positives = 384/714 (53%), Gaps = 46/714 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S ++++ L + H+ YY P I DSEYD L R A+ P+ + Sbjct: 1 MS-SSISEQVNHLRIILEQHNYNYYVLDTPSIPDSEYDRLLRELSALETEHPEFLTA--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+GG +V H +P LSL+ ++ E+ F RI D + F E Sbjct: 57 DSPTQKVGGAALSKFEQVAHQVPMLSLDNAFSEEEFTAFNRRIKERLMSTD--ELTFCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK+DG ++I Y G V AA RGDG +GE+++ ++ I +P L + P+ +EVRGEV Sbjct: 115 PKLDGLAVSIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPKELEVRGEV 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEI 249 ++ F LN E G K + NPRNAA+G LR+L+ R L F+ + G Sbjct: 175 FMDSAGFDKLNTEAEKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGN 234 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + Y+ L+K+ G P+ + ++YY ++ + RS L Y+IDG+V K+++ Sbjct: 235 IPEDHYQQLEKLTDWGLPLCPETKLVEGPKAALAYYRDILTRRSELKYEIDGVVIKINQK 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG AR+PRW I++KF ++ T+LLD+D Q+GRTG +TPVARL+PV +GG ++ Sbjct: 295 TLQERLGFVARAPRWAIAYKFPAQEEITQLLDVDFQVGRTGAITPVARLKPVFVGGVTVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D + L ++VGD V+++RAG+VIP++ +++ R DA+ Sbjct: 355 NATLHNSDEVARL-----------GVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIE 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CPIC S V + A RCTGGL C AQ+ + +KHF SR A +I+GLG + Sbjct: 404 FPTTCPICDSHVEKVEGE------AVARCTGGLVCPAQRKQAIKHFASRKALDIDGLGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D E I+ PAD+F L++ E++ G S NL ++ + + + Sbjct: 458 IVDQLVDRE----LIKTPADLFILKQ------GHFESLERMGPKSAKNLVTALEEAKGTT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L +F++SLGIR G A++LA ++L+ +N SL +V VG+I+A Sbjct: 508 LAKFLYSLGIREAGEATAQNLANHFLTLENVINA----------SIDSLTQVSDVGEIVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 + F+ N+ V AL+ + + V TGTL + R+ A+ Sbjct: 558 AHVRGFFDEEHNLAVVNALIDQGVNWPALSAPSEEEQPLAGLTYVLTGTLNTLNRNDAKA 617 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + QLGA VS +S KTD ++ G+ GSKL KAQ LG+ I+ E++ + LL ++N Sbjct: 618 RLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDILTEDELIELLIKHN 671 >gi|146277206|ref|YP_001167365.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17025] gi|166216230|sp|A4WRP6|DNLJ_RHOS5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145555447|gb|ABP70060.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17025] Length = 704 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 297/687 (43%), Positives = 424/687 (61%), Gaps = 17/687 (2%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 Y+ + P I D++YDALKRR AI FP L RS + P ++GG + KV H + Sbjct: 33 YHTHDAPRISDADYDALKRRNRAIEERFPALRRS---DSPSERVGGALAEGFAKVRHEVR 89 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSLE + + ++ ++I RI RF D + FT EPKIDG +++RYEKG+ V AA R Sbjct: 90 MLSLENAFELAEVEEWIERIRRFLGHVGD--LRFTAEPKIDGLSLSLRYEKGRLVQAATR 147 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG +GE+V+ R I +P L+ P+++EVRGEVY+ DF ALN+ A G++ +A Sbjct: 148 GDGETGENVTENARTIGDLPTELTGA-PDLLEVRGEVYMRHADFAALNERQEATGQRLFA 206 Query: 215 NPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273 NPRNAA+G LR+L+P +R L+FF + G SE A Q + ++ LGF N R Sbjct: 207 NPRNAAAGSLRQLDPAVTASRPLHFFAYAWGAHSEPLADTQQGAIARLSALGFATNPLTR 266 Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333 ++++Y +++ R++L YDIDG+VYKVD+ +LQ++LG RA +PRW I+HKFA + Sbjct: 267 LCTGPDELLAHYADIERQRASLGYDIDGVVYKVDDLALQRRLGFRASTPRWAIAHKFAAE 326 Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393 A T+L IDIQ+GRTG L+PVARL+PV +GG ++ NATLHNEDYI G D+ G+ +RGG+ Sbjct: 327 LAWTQLEGIDIQVGRTGALSPVARLKPVTVGGVVVANATLHNEDYIAGRDSKGQEIRGGK 386 Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453 DIRVGD V V RAG+VIPKV ++ ++ R A+P+ FP CP C S +R+ Sbjct: 387 DIRVGDWVQVYRAGDVIPKVAEVDLSRRPEGAEPYRFPDTCPDCGSAAIREPG------D 440 Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513 + RCTGGL C AQQ+ERLKHFVSR AF+IEGLG +Q++ ++ IR PADIF L Sbjct: 441 SVRRCTGGLICPAQQVERLKHFVSRAAFDIEGLGARQVEALWRD----GWIRQPADIFEL 496 Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 R + ++EN G+G S NL +I RR I+L R IF+LGIRHVG A LA + Sbjct: 497 PNRYRDGLQRLENREGWGRKSAENLLAAIEARRRIALHRLIFALGIRHVGETTATLLATH 556 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 Y S+ F + +W L+ + VG ++A ++V + A++AL ++ Sbjct: 557 YGSWAAFEAAMTRAEVGTGSEWQDLLSIDGVGAVLATSLVTTFHQEAERAAIDALAAHLT 616 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 V S I K +VFTGTL+K+ R++A+ LGA VS +S +TD+++ G Sbjct: 617 VEDAEMRAPVESPIAGKIVVFTGTLEKMSRNEAKARAEALGAKVSGSVSARTDLVVAGPG 676 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 GSK ++A LGV+ + E+ +L L+ Sbjct: 677 AGSKAKQAAALGVETIGEDAWLRLIGD 703 >gi|253996456|ref|YP_003048520.1| DNA ligase, NAD-dependent [Methylotenera mobilis JLW8] gi|253983135|gb|ACT47993.1| DNA ligase, NAD-dependent [Methylotenera mobilis JLW8] Length = 677 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 253/720 (35%), Positives = 386/720 (53%), Gaps = 47/720 (6%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + L + A + L I+ +D YY P + DSEYD + R + A+P L + Sbjct: 1 MPDLKLSSAELRVLELRGLIARYDYEYYVLDAPSVPDSEYDKIYRELQTLEQAYPSLVVA 60 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P ++ G + +TH LSL + +L F RI + + Sbjct: 61 ---DSPTQRVSGTATNAFGSITHRQAMLSLNNAFEQSELEAFDKRIREALGVA---QVEY 114 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEV 187 +EPK DG IT+ YE G F+ A RGDG++GEDV+ +R + IP N P+++EV Sbjct: 115 AVEPKFDGLAITLTYEHGVFIQGATRGDGYTGEDVTHNLRTLRAIPMRLNCENPPQLLEV 174 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEV + K DF LN +A G K +ANPRNAA+G LR+L+ TR L FF +GLG Sbjct: 175 RGEVLMLKRDFDKLNQAQLAKGEKLFANPRNAAAGSLRQLDAKVTATRPLTFFAYGLGVA 234 Query: 247 SEIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + A + + L FPV++ G+ YY ++ R LP+DIDG+VYK Sbjct: 235 EGVPALTSHGAAMDYLASLHFPVSSARAVVRGVQGLSDYYEKIGQQRQQLPFDIDGVVYK 294 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++F+ Q +LG +R+PRW ++HKF ++A T + DI +Q+GRTG +TPVARL+PV +GG Sbjct: 295 VNQFNQQNELGFVSRAPRWAVAHKFPAQEALTLVEDITVQVGRTGAITPVARLKPVFVGG 354 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +TNATLHNED I+ +DI +GD V V+RAG+VIP+VV ++V +R A Sbjct: 355 VTVTNATLHNEDEIRR-----------KDILIGDTVSVRRAGDVIPEVVSVVVEKRPAHA 403 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + F P+ CP C S +++ + A RCTGGL C AQ+ + + H+ SR A +IEG Sbjct: 404 RRFEMPTVCPECGSHILKQADE------AVARCTGGLFCPAQRKQAITHYASRRAMDIEG 457 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG++ +D + A + AD+++L + N+ + S N+ D++N Sbjct: 458 LGEKLVDQLVE----ANLVHTLADVYSL------DIHTLSNLERMAEKSAQNILDALNAS 507 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 ++ +L RFI++LG+R+VG A+ LAK++ + L+ V VG Sbjct: 508 KDTTLARFIYALGMRNVGEATAKDLAKHFGNLNALMAA----------SIEDLLEVNDVG 557 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTLQKIQRH 664 I+A++I F+ N + ALL + ++ + + K V TGTL + R Sbjct: 558 PIVAESIKNFFSEEHNKSVIAALLNAGIHWVETEGKQQATGNLVGKTFVLTGTLPNLARD 617 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 A+ + G VS +S+KTD ++ G + GSKLEKAQ LGV I++E L +L + + Sbjct: 618 DAKALIEAAGGKVSGSVSKKTDFVVAGADAGSKLEKAQLLGVAIIDEANLLAVLAEGEAS 677 >gi|148828262|ref|YP_001293015.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittGG] gi|166215779|sp|A5UIM6|DNLJ_HAEIG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148719504|gb|ABR00632.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittGG] Length = 670 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 243/709 (34%), Positives = 392/709 (55%), Gaps = 45/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S + Sbjct: 1 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ ++ + F+ RI + F EPK Sbjct: 58 PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDTEFNAFVKRIEDRLILLP-KPLTFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I Y G AA RGDG +GED++A IR I +P L + N P +EVRGEV+ Sbjct: 117 LDGLAVSILYVNGVLTQAATRGDGSTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250 + F LN + K +ANPRNAA+G LR+L+P ++ +G+G + Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y+ LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ + Sbjct: 237 PTTHYDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ R +A+P F Sbjct: 357 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S+++R A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E I PAD+F L T + + G S N +S+ ++ +L Sbjct: 460 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGAKSAENALNSLENAKSTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGIR VG A +LA ++ + + L +VP VG+++A Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLDALKDA----------NLEELQQVPDVGEVVAN 559 Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F++ N+ VE L+ + ++ + ++K +V TGTL ++ R++A+ Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL + Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668 >gi|309792382|ref|ZP_07686850.1| DNA ligase, NAD-dependent [Oscillochloris trichoides DG6] gi|308225603|gb|EFO79363.1| DNA ligase, NAD-dependent [Oscillochloris trichoides DG6] Length = 674 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 250/714 (35%), Positives = 370/714 (51%), Gaps = 49/714 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + + + L + H+ YY P + D+EYDAL R + P+L P Sbjct: 1 MAESELVQRIERLRALLREHNYRYYVLDDPNVSDAEYDALMRELRHLEATHPELC---SP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G + KV H LSL ++ DL + R+ + D + + +E Sbjct: 58 DSPTQRVGAPVTSQFGKVRHPQAMLSLGNAFDEADLHAWRERVLKLLG--ADTPLAYVVE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-----RVLSLNIPEIIE 186 PKIDG I++ Y G+F A RGDG GEDVSA +R + IP IP IE Sbjct: 116 PKIDGLAISLTYRAGRFELGATRGDGEVGEDVSANLRTVRGIPLLLRTETPDTPIPTSIE 175 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY+ DF ALN + + G K +AN RN+A+G LR+ +P R L FF + +G Sbjct: 176 VRGEVYMRSADFEALNKRLASSGEKIFANARNSAAGSLRQKDPAITANRPLRFFAYQVGP 235 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + Q++ L +R LGFPVN R+ + F ++ Y + R +L ++ DG+V K Sbjct: 236 VEGVELTSQWQTLAYLRDLGFPVNRDARRFDDFAAVLDYCRAWMARRDSLEFEADGIVIK 295 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 +D+F+ Q++LG R PRW I+ KF ++A+TRL I + +GRTG+LTP A LEPV IGG Sbjct: 296 IDDFAQQRELGVVGRDPRWAIAFKFPAREATTRLQAITVNVGRTGVLTPGAELEPVVIGG 355 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + NA+LHN DYI RDIRVGD V VKRAG+VIP V+ I++ R Sbjct: 356 VTVRNASLHNADYI-----------AERDIRVGDYVTVKRAGDVIPYVIGPILSRRDGSE 404 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 QP+SFP+ CP C + + R AA RC C AQ + R++H+VSR A +I G Sbjct: 405 QPWSFPTTCPACGTALERVEGE------AAWRCPNFGICPAQLVRRVEHYVSRGALDIVG 458 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 +G++Q + F A I AD++ L GFG + NL +I + Sbjct: 459 IGEKQAELFV----TAGLIADVADLYALHMHHFQGM------EGFGPKKIANLITAIEES 508 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + L+R + LGIR VG+ A++LA Y S L ++ +G Sbjct: 509 KTRPLDRLLVGLGIRFVGSVAAQTLANQYGSLDAIMAATQA----------DLEQIEGIG 558 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 ++A ++V+F+Q+P N VE L + + G + S + K V TGTL + R Sbjct: 559 PVLAASVVDFFQHPENRALVEKLRAAGLTLTGGVPRQLQSQNLSGKTFVLTGTLPTLTRE 618 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A E + G +S +S+KT ++ G + GSKL KA QLGV +++E L+ Sbjct: 619 QAAEMILAHGGKLSESVSKKTSYVVAGASAGSKLAKATQLGVPVLDEAGLRELV 672 >gi|117618613|ref|YP_855770.1| DNA ligase, NAD-dependent [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166215386|sp|A0KHL9|DNLJ_AERHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|117560020|gb|ABK36968.1| DNA ligase, NAD-dependent [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 668 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 245/709 (34%), Positives = 386/709 (54%), Gaps = 45/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + L + + + YY P + D+EYD L R + P+L P Sbjct: 1 MSDILSRHRQLCELLIEYGHQYYVLDNPTVPDAEYDRLMRELIVLEAEHPELK---TPAS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG+ + +V H IP LSL+ +++ E+L+ F R+ +++ S F EPK Sbjct: 58 PSVRVGGQPLTAFKQVRHEIPMLSLDNVFSGEELQAFEQRMRDRLKREV--SFTFCCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG +++ Y G+ V AA RGDG +GE+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSLLYVAGQLVQAATRGDGTTGEEITENVRTIKAIPLSLRGEGWPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFA 251 + K F A+N + +A G K + NPRNAA+G LR+L+ +R L F+ +G+G E Sbjct: 176 MPKAGFEAMNAKALAAGEKVFVNPRNAAAGSLRQLDSRITASRPLAFYAYGVGVGGEQLG 235 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + L +++ G P++ V+ G ++++++ + R LPY+IDG+VYKVD L Sbjct: 236 GSHFGRLNQLKEWGLPLSPEVKLKEGAAGCQAFHDDILARRGELPYEIDGVVYKVDAIPL 295 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG AR+PRW +HKF ++ T L +++ Q+GRTG +TPVA+L+PV +GG ++NA Sbjct: 296 QEELGFVARAPRWATAHKFPAQEEMTELENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNA 355 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I+ L + +GD V+V+RAG+VIP++V ++ +R DA+ FP Sbjct: 356 TLHNADEIERL-----------GVMIGDTVIVRRAGDVIPQIVAVVEAQRPADARAILFP 404 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+C S V R A RC+GGL C AQ+ E +KHF +R A +++GLG + + Sbjct: 405 TECPVCGSAVERLEGE------AVTRCSGGLFCEAQRKEAIKHFAARRAMDVDGLGDKIV 458 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + ++ PAD+F+L Q + G S NL +I+ R+ +L Sbjct: 459 EQLVDK----GLVKTPADLFSLNAIQLAG------LERMGQKSALNLVAAIDAARSTTLP 508 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RF+F+LGIR VG A +LA ++L+ L+ V VGDI+A+ Sbjct: 509 RFLFALGIREVGEATALNLANHFLTLDALRAA----------SVEQLLEVADVGDIVAKH 558 Query: 612 IVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 + F + P NI +EALL ++ K V TGTL + R+ A+ + Sbjct: 559 VYYFLRQPHNIEVLEALLAAGIHWPAIEKKEASEQPFAGKTFVLTGTLTTLSRNDAKAAL 618 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA V+ +S KTD+++ G+ GSKL KAQ+LG+ + +EE+ LQ Sbjct: 619 QALGAKVAGSVSAKTDVLVAGEAAGSKLVKAQELGITVWSEEELQQALQ 667 >gi|229843861|ref|ZP_04464002.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 6P18H1] gi|229812855|gb|EEP48543.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 6P18H1] Length = 670 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 245/711 (34%), Positives = 394/711 (55%), Gaps = 45/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + ++++L + + ++ Y+ P + DSEYD L + A+ P+ S + Sbjct: 1 MTNIQTKINNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ ++ + F+ RI + F EPK Sbjct: 58 PTQRVGAKPLSGFSQIHHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I Y G AA RGDG GED++A IR I IP L + N P +EVRGEV+ Sbjct: 117 LDGLAVSILYINGVLTQAATRGDGTIGEDITANIRTIRNIPLQLLTDNPPARLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250 + F LN + K +ANPRNAA+G LR+L+P ++ +G+G + Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ + Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ R +A+P F Sbjct: 357 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S+++R A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E I PAD+F L T + + G S N +S+ K ++ +L Sbjct: 460 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGVKSAENALNSLEKAKSTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGIR VG A +LA ++ + + D L +VP VG+++A Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLDALKEA----------DLDQLQQVPDVGEVVAN 559 Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F++ N+ VE L+ + ++ + ++K +V TGTL ++ R++A+ Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL + + Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLVKAQELNITVLTEEEFLAQITK 670 >gi|320540519|ref|ZP_08040169.1| DNA ligase, NAD(+)-dependent [Serratia symbiotica str. Tucson] gi|320029450|gb|EFW11479.1| DNA ligase, NAD(+)-dependent [Serratia symbiotica str. Tucson] Length = 685 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 243/714 (34%), Positives = 396/714 (55%), Gaps = 50/714 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++++ L + +H+ Y+ P + D+EYD L + A P+L + + Sbjct: 1 MKSITEQINQLRASLRHHEYQYHVLDAPEVPDAEYDRLMCELRELESAHPELITA---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + + +V H + LSL+ +++ E F R+ K + + F E K Sbjct: 58 PTQRVGAALLAAFDQVRHELLMLSLDNVFDEESFLAFYKRVQERL--KISDPLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE++++ +R I IP L+ NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLTGANIPRRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N E K +ANPRNAA+G +R+L+P R L FF +G+G Sbjct: 176 MPQAGFEQMNTEARRKNGKIFANPRNAAAGSIRQLDPRITANRPLTFFCYGVGLLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + +E L + R G PVN+G R ++++Y++++ R+ L +DIDG+V K+D+ Sbjct: 236 PRSHFERLMQFRAWGLPVNDGARCCTGSDEVLAFYHQVEQDRAQLGFDIDGVVVKIDDID 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG AR+PRW + KF ++ T + +I+ Q+GRTG +TPVARLEPV + G ++N Sbjct: 296 LQEKLGFVARAPRWATAFKFPAQEQITLVREIEFQVGRTGAITPVARLEPVLVAGVTVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIPKVV ++ + R D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPKVVGVLEDRRPQDTRAVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S V R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PQHCPVCGSDVERLEGE------AVARCTGGLICAAQRKEALKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + E ++ PAD+F L S + + G S NL +++ K R + Sbjct: 459 IEQLVEKE----YVKNPADLFRL------SANMLSGLDRMGPKSAQNLVNALEKSRQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ S + D +L VP VG+++AQ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFGSLEKLYAA----------DIAALKEVPDVGEVVAQ 558 Query: 611 AIVEFYQNPRNICAVEALLK-EVSPSIGRH----EKNVSSEIENKKLVFTGTLQKIQRHK 665 F N + L+ E+ + + + S K +V TG+L ++ R Sbjct: 559 HTRHFLDEALNQKVIAELVSVEIGINWPVPVVVATEEIDSPFAGKTVVLTGSLSQLSRDD 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A++ + LGA +S +S+KTD++I G+ GSKL KAQ+LG+++++E + L L++ Sbjct: 619 AKDRLKVLGAKISGSVSKKTDLVIAGEAAGSKLVKAQELGIEVIDEAELLRLIE 672 >gi|108803178|ref|YP_643115.1| DNA ligase, NAD-dependent [Rubrobacter xylanophilus DSM 9941] gi|122976160|sp|Q1AZ75|DNLJ_RUBXD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|108764421|gb|ABG03303.1| DNA ligase, NAD-dependent [Rubrobacter xylanophilus DSM 9941] Length = 685 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 244/720 (33%), Positives = 374/720 (51%), Gaps = 45/720 (6%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 ++IP A + +AR+ + L ++I YH+ YY P I D+EYDAL R + + FP Sbjct: 7 PRIIPPVAEKLAEARQRVEELREQIRYHNRKYYVEDAPEISDAEYDALYRELEELESRFP 66 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 +L P+ P ++GGE +V H++P LSL+ +E+LR++ R+ R +++ Sbjct: 67 ELV---TPDSPTQRVGGEPLEEFEEVRHAVPMLSLQNARRVEELREWDARVRRLLGPEEE 123 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 + + E KIDG +++RYE G+ V A RG+G GEDV+ +R I ++P L + P Sbjct: 124 GRLRYVTELKIDGLAVSLRYENGRLVRGATRGNGFVGEDVTRQLRTIRSVPDRLDDDPPG 183 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 ++E RGEVYI DF N G +P+ANPRN A+G +R+L+P R L +++G Sbjct: 184 VLEPRGEVYIKLKDFEEFNRRRQERGERPFANPRNLAAGSVRQLDPRVTARRPLTIYLYG 243 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 +G+ + E L +R G VN ++ R L + +DG+ Sbjct: 244 VGEG-YENFESHSEALAALRRYGLRVNPHT-VHGDIDSVIEECGRWAKKREALDFQVDGV 301 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KVD Q++LG ++PRW I++KF TRL DI + +GRTG LTP A LEPVN Sbjct: 302 VVKVDSREQQERLGAVQKAPRWAIAYKFEPLAGRTRLRDIVVTVGRTGALTPQAVLEPVN 361 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 +GG I+ ATLHNEDYIK + I +GD V+V+RAG+VIP+VV + ER Sbjct: 362 VGGVTISRATLHNEDYIK-----------EKGILIGDTVIVERAGDVIPQVVRPVPEERD 410 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 D + F P CP+C RV R A RC + E + H+ SR A + Sbjct: 411 GDEEEFRMPERCPVCGERVSRPEGE------AITRCANVRCPAQAL-EHIIHWASRGAMD 463 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEGLG++ F IR AD++ L+ Q + + G G+ S NL +I Sbjct: 464 IEGLGEKLARKLFD----LGLIRDVADLYELRAEQ------LAPLEGLGEKSAQNLIRAI 513 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + + +R +F LGIRHVG+ A +A+ + + L ++ Sbjct: 514 ERSKERPFDRVLFGLGIRHVGSATAELIAERFSGEELLR----------GVGVEELTQIE 563 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 VG+I+A+A+VE++ N V L++ K + ++LV TGTL + Sbjct: 564 GVGEIVARAVVEYFSLEENRKLVRRLMEHGLNFGPVRGKPEEGPLSGRRLVITGTLSR-P 622 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 R + + + G V++ +SR TD ++ G+NPGSKLE+A++LGV +++EE LL Sbjct: 623 RSEISDLIEGAGGTVTSSVSRNTDYLVAGENPGSKLERARELGVPVLDEEGLRRLLSGEE 682 >gi|242238286|ref|YP_002986467.1| NAD-dependent DNA ligase LigA [Dickeya dadantii Ech703] gi|242130343|gb|ACS84645.1| DNA ligase, NAD-dependent [Dickeya dadantii Ech703] Length = 684 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 252/728 (34%), Positives = 400/728 (54%), Gaps = 52/728 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M +++ +P+ S + + +L ++ YH+ Y+ P I D+EYD L + Sbjct: 1 MSEKKPMPMNDTSAAAVQ--IDALRAQLRYHEYKYHVEDAPEIPDAEYDKLMNALKLLEQ 58 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 A P+ S + P ++G V H +P LSL+ +++ E + F+ RI Sbjct: 59 AHPEWVTS---DSPTQRVGATPLAGFDNVQHEVPMLSLDNVFDAESFQAFVKRIGDRL-- 113 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 K D ++ F E K+DG +++ YE G V AA RGDG +GE++++ IR I IP L + Sbjct: 114 KSDEALRFCCELKLDGLAVSLLYEDGVLVRAATRGDGSTGENITSNIRTIGAIPLRLRGD 173 Query: 181 I-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238 P +EVRGEV++ F ALN+E G K +ANPRNAA+G LR+L+P R L F Sbjct: 174 NIPRRLEVRGEVFMKHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTF 233 Query: 239 FVHGLG-KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 F +G+G ++ L + R G PV++ +R ++++Y ++++R TL + Sbjct: 234 FCYGVGLMEGGSLPDSHWQRLMQFREWGLPVSDRIRLCTGGDEVLAFYQHVEAVRDTLGF 293 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+V KVD+ +LQ++LG AR+PRW ++ KF ++ T L D++ Q+GRTG +TPVAR Sbjct: 294 DIDGVVIKVDDLALQERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVAR 353 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 LEPV + G +++NATLHN D I L I++GDRV V+RAG+VIP++V ++ Sbjct: 354 LEPVAVAGVIVSNATLHNADEIDRL-----------GIQIGDRVAVRRAGDVIPQIVSVV 402 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 + +R DA+P FP+ CP+C S V R RCTGGL C+AQ+ E LKHFVS Sbjct: 403 LPDRPADARPVVFPTQCPVCGSDVERVDGE------VVTRCTGGLFCAAQRKEALKHFVS 456 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R A ++EG+G + +D + E ++ PA++F L + + G S N Sbjct: 457 RRALDVEGMGDKIIDQLVEKE----YVKTPAELFRL------DIGILTRLERMGPKSAQN 506 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L ++++K ++ + RF+++LGIR VG A LA ++ + D + Sbjct: 507 LVNALDKAKSTTFARFLYALGIRDVGEATAAGLAAHFGTLDALMTA----------DVDT 556 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALL--KEVSPSIGRHEKNV---SSEIENKKL 652 L +VP VG ++A + F N + L+ + + + K + Sbjct: 557 LQQVPDVGIVVATHVRHFLDEEHNQQIIRELIGPEVGLRWPDPVVVDAGALDNPFAGKTV 616 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TG+L + R +A++ +T LGA VS +S+KTD++I G+ GSKL KAQ LG+ +++E Sbjct: 617 VLTGSLSLLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQALGIDVIDEV 676 Query: 713 QFLFLLQQ 720 + + LL Q Sbjct: 677 EMMRLLGQ 684 >gi|332766219|gb|EGJ96429.1| DNA ligase, NAD-dependent [Shigella flexneri 2930-71] Length = 647 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 238/687 (34%), Positives = 379/687 (55%), Gaps = 48/687 (6%) Query: 38 YSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLS 97 P I D+EYD L R + P+L P+ P ++G + ++ H +P LS Sbjct: 1 MDAPEIPDAEYDRLMRELRELETKHPELI---TPDSPTQRVGAAPLAAFSQIRHEVPMLS 57 Query: 98 LEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157 L+ +++ E F R+ K++ + + E K+DG ++I YE G V AA RGDG Sbjct: 58 LDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELKLDGLAVSILYENGVLVSAATRGDG 115 Query: 158 HSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANP 216 +GED+++ +R I IP L P +EVRGEV++ + F +N++ G K +ANP Sbjct: 116 TTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANP 175 Query: 217 RNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQ 274 RNAA+G LR+L+P R L FF +G+G L + + G PV++ V Sbjct: 176 RNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQFKKWGVPVSDRVTL 235 Query: 275 ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQ 334 + ++++Y++++ R TL +DIDG+V KV+ Q+QLG AR+PRW ++ KF ++ Sbjct: 236 CESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARAPRWAVAFKFPAQE 295 Query: 335 ASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRD 394 T + D++ Q+GRTG +TPVARLEPV++ G L++NATLHN D I+ L Sbjct: 296 QMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERL-----------G 344 Query: 395 IRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454 +R+GD+V+++RAG+VIP+VV+++++ER D + FP+ CP+C S V R A Sbjct: 345 LRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGE------A 398 Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ 514 RCTGGL C AQ+ E LKHFVSR A +++G+G + +D + E + PAD+F L Sbjct: 399 VARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKE----YVHTPADLFKLT 454 Query: 515 RRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574 K+ + G N+ +++ K + + RF+++LGIR VG A LA Y+ Sbjct: 455 A------GKLTGLERMGPKLAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYF 508 Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS- 633 + + L +VP VG ++A + F+ N + LL E Sbjct: 509 GTLEALEAA----------SIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVH 558 Query: 634 --PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 I + + + S K +V TG+L ++ R A+ + +LGA V+ +S+KTD++I G Sbjct: 559 WPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAG 618 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + GSKL KAQ+LG+++++E + L LL Sbjct: 619 EAAGSKLAKAQELGIEVIDEAEMLRLL 645 >gi|317401960|gb|EFV82562.1| DNA ligase [Achromobacter xylosoxidans C54] Length = 699 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 262/745 (35%), Positives = 388/745 (52%), Gaps = 76/745 (10%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M K P A + + L EI H+ YY Y P I D+EYD L R + Sbjct: 1 MSKAGGTP--------AAETAARLRAEIEQHNVRYYVYDDPSISDAEYDRLMRELQDLEA 52 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ- 119 A P+L P P ++G + V H++P LSL ++ ED+ F R+ + Sbjct: 53 AHPELV---TPESPTQRVGAAPVSAFGSVRHAVPMLSLGNAFDEEDVVAFDRRVTDTLRG 109 Query: 120 ---KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176 + E K+DG I++RYE G+ V AA RGDG +GEDV++ IR I IP Sbjct: 110 AGLLGPAQQAEYFCELKLDGLAISLRYEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQ 169 Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRY 235 LS P+++EVRGEV +++ DF LN K + NPRNAA+G LR+L+P R Sbjct: 170 LSGPAPKVLEVRGEVLMNRADFEKLNAAQAKRDEKVFVNPRNAAAGSLRQLDPRITAKRP 229 Query: 236 LNFFVHGLGKTSEIFAKG---------------------QYEMLQKMRCLGFP-VNNGVR 273 L FF +G G+ + ML + LG P Sbjct: 230 LRFFAYGWGEVRGLPGTQSGLFDEASAGAADASTLPEKSHGAMLDWLASLGLPVNVKHNH 289 Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333 +A G++++Y ++ ++R LPYDIDG+VYKVD QK LG AR+PR+ ++HKF + Sbjct: 290 RATGAEGLMAFYAKVGALRPELPYDIDGVVYKVDSLPAQKLLGFVARAPRFALAHKFPAE 349 Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393 +A+T LLDI++Q+GRTG +TPVARL+PV +GG +TNATLHNED I+ + Sbjct: 350 EATTTLLDIEVQVGRTGAITPVARLKPVFVGGVTVTNATLHNEDEIRR-----------K 398 Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453 D+R+GD V+V+RAG+VIP+VV ++ +R DA+ F P CP+C S + R + Sbjct: 399 DVRIGDTVIVRRAGDVIPEVVGAVLEKRPADAREFVMPKACPVCGSAIERLEDET----- 453 Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513 RCTGGL C+AQ+ + L H SR A +IEGLG++ ++ S ++ AD+F+L Sbjct: 454 -IARCTGGLFCAAQRKQTLWHAASRKALDIEGLGEKLVEQLVDS----GRVKSLADLFSL 508 Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 + ++ + G S NL ++I+K R +L R +F+LGIRHVG AR +A++ Sbjct: 509 R------PLELVGLDRMGQKSADNLVEAIDKARAPALGRLLFALGIRHVGETTARDVARH 562 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + S + D +L VP VG ++A +I F+ N + L + Sbjct: 563 FGSIEAIMDA----------DEDALSSVPDVGPVVAGSIRRFFAEQHNRDVIGQLKAQGV 612 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 + + K V TGTL R +A + G VS +S+KT ++ G++ Sbjct: 613 -HAVAEAVPQDTTLAGKTFVLTGTLPNWTREEASMRIQAAGGKVSGSVSKKTAYLVAGED 671 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLL 718 GSKL KAQ+LGV +++E+ LL Sbjct: 672 AGSKLTKAQELGVTVLDEDGLKELL 696 >gi|23098215|ref|NP_691681.1| NAD-dependent DNA ligase LigA [Oceanobacillus iheyensis HTE831] gi|81741485|sp|Q8CXK6|DNLJ_OCEIH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|22776440|dbj|BAC12716.1| DNA ligase (polydeoxyribonucleotide synthase[NAD+]) [Oceanobacillus iheyensis HTE831] Length = 667 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 252/714 (35%), Positives = 397/714 (55%), Gaps = 52/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ EQ K++ SL + ++ + YY P + D+EYD R + FPDL Sbjct: 1 MNKEQVSKKIESLIELLNQYGYEYYVLDNPTVPDAEYDQKLRELQQLEQDFPDLVME--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++GG S KVTH++P LSL +N +DLR F R D I F E Sbjct: 58 NSPTQRVGGAPLASFQKVTHNVPMLSLGNAFNEQDLRDFARRASNG----TDQPISFVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++ YE GKFV A RGDG GED+++ ++ I +IP + +EVRGE Sbjct: 114 LKIDGLAISLTYENGKFVRGATRGDGTIGEDITSNLKTIRSIPLSIKE--QGTLEVRGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ FLALN+ +P+ANPRNAA+G LR+L+P R L+ F++G+G+ Sbjct: 172 YMPHKSFLALNELREKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFLYGVGEWENSD 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L +++ LGF N ++ NT ++ Y N R+ L Y+IDG+V KVD Sbjct: 232 LTSHSEHLTRLKELGFKTNKEWKKCNTIDEVIEYVNYWTEHRNDLSYEIDGIVIKVDSLD 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG A+SPRW I++KF ++A T L DI++ IGRTG++TP A L+PV + G + Sbjct: 292 QQEELGFTAKSPRWAIAYKFPAEEAMTTLRDIELSIGRTGVVTPTAILDPVRVAGTTVQR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD+V++K+AG++IPKVV +V +R+ D Q F Sbjct: 352 ASLHNEDLIR-----------EQDIRIGDKVVIKKAGDIIPKVVRSVVEQRNGDEQEFHM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C + +VR A RC C AQ +E L HFVSR+A NI+GLG++ Sbjct: 401 PDECPACGNELVRLEEE------VALRCINP-NCPAQLMEGLIHFVSRNAMNIDGLGEKV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ ++ AD++ L + ++ + G+ SVTNL ++I K + SL Sbjct: 454 IIQLFQEN----LVQTMADLYRLDKE------ELLQLERMGEKSVTNLLEAIEKSKENSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIR +G++ A++LA + + +N + + ++ + +GD +A Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMEFETMENLQKAT----------YEDVLAIDEIGDKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 +IV+++ + + L + + E+ S + K +V TG ++K R +A Sbjct: 554 SIVQYFAEEKVTELLSNLRELGVQMEYKGPRKSEQATDSVLSGKTVVLTGKMEKFSRKEA 613 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +E + LG V+ +S+KTDI+I G++ GSKL+KA++LG+ + +E+Q ++ + Sbjct: 614 KEIIESLGGTVTGSVSKKTDIVIAGEDAGSKLDKAEKLGIDVWSEQQLEDVVGK 667 >gi|284047985|ref|YP_003398324.1| DNA ligase, NAD-dependent [Acidaminococcus fermentans DSM 20731] gi|283952206|gb|ADB47009.1| DNA ligase, NAD-dependent [Acidaminococcus fermentans DSM 20731] Length = 675 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 248/719 (34%), Positives = 375/719 (52%), Gaps = 51/719 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + ++ E A + L + + YY P+I D+EYDA+ R A+ +P+L Sbjct: 1 MSEMTKEAAAARIDQLRAVMKKNSYLYYVQDNPLITDAEYDAMMRELKALEAEYPELV-- 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ P +GG +V H P LSL ++ E++ +F R++ D + + Sbjct: 59 -TPDSPSQHVGGYAKPGFTEVRHMTPLLSLANAFSPEEMEEFDRRVHEGL--PQDVKVQY 115 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP----RVLSLNIPEI 184 +EPKIDG +I YE G+FV AA RGDG GE+V+ +R I IP + + IPE+ Sbjct: 116 VVEPKIDGLACSIIYENGRFVRAATRGDGVVGENVTENVRTIANIPKVLKPIPGIEIPEL 175 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 ++VRGEVY+ + F+ LN+E G + +AN RNAA+G LR+L+P R L FF +G+ Sbjct: 176 LDVRGEVYMPRQAFVKLNEERQEAGEQEFANCRNAAAGSLRQLDPRVTARRSLAFFAYGV 235 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G + + ++ GF G +T + R+ L YD DG+V Sbjct: 236 GVGAGNLPT-HNASMDMLQQYGFTTTEGRTLVDTIQEANELIKKHGERRAVLGYDTDGVV 294 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV++ Q LG + PRW +++KF +QA T L DI IQ+GRTG+LTP A L PV + Sbjct: 295 VKVNDVWQQNILGATGKDPRWAMAYKFPPEQAETLLEDIVIQVGRTGVLTPTAVLRPVRL 354 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G+ I+ ATLHNED+I+ RDIR+GD V++ +A E+IP+V+ ++ +R Sbjct: 355 SGSTISRATLHNEDFIR-----------ERDIRIGDHVIINKAAEIIPEVLRVVPEKRTG 403 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + + F P CP C +V R AA RCT C A E L HF SRDA NI Sbjct: 404 EEKEFHMPETCPECGWKVERKAGE------AAWRCTNP-HCPALGREGLIHFTSRDAMNI 456 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +G G L A ++ P D++ L R Q E + G S NL +I Sbjct: 457 DGCGPSVLAQLT----AAGLVKDPGDLYLLTREQV------ETLDRMGPKSADNLVSAIA 506 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 +N SL++ +F+LGIRHVGA++A +LA+ Y + D L + P Sbjct: 507 ASKNQSLDKLLFALGIRHVGAKVAHTLARKYGTMDKLMAA----------DQEDLAQTPD 556 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKI 661 +G +IA+++V ++ +P N VE L + ++ + K LVFTGTL + Sbjct: 557 IGPVIAESVVTWFADPMNQAYVERLKELGLNMEMTSGPAQDENHPFYGKTLVFTGTLPTL 616 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R A+ ++GA V+ +S+KTD ++ G +PGSK KAQ LGV I++E +FL ++ + Sbjct: 617 DRATAKTMAQEVGAKVTGSVSKKTDYVVAGADPGSKYTKAQSLGVTILDEAEFLRMMGR 675 >gi|148826285|ref|YP_001291038.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittEE] gi|166215778|sp|A5UD04|DNLJ_HAEIE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148716445|gb|ABQ98655.1| DNA ligase [Haemophilus influenzae PittEE] Length = 670 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 242/709 (34%), Positives = 389/709 (54%), Gaps = 45/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S + Sbjct: 1 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ ++ + F+ RI + F EPK Sbjct: 58 PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KQLTFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I Y G AA RGDG GED++A IR I +P L + N P +EVRGEV+ Sbjct: 117 LDGLAVSILYVNGVLTQAATRGDGTIGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250 + F LN + K +ANPRNAA+G LR+L+P ++ +G+G + Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ + Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYQDIQNKRSSLGYDIDGTVLKINDIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +++PRW ++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 297 LQNELGFISKAPRWATAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ R +A+P F Sbjct: 357 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S+++R A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E I PAD+F L T + + G S N +S+ ++ +L Sbjct: 460 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGTKSAENALNSLENAKSTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGIR VG A +LA ++ + + L +VP VG+++A Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLDALKDA----------NLEELQQVPDVGEVVAN 559 Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F++ N+ VE L+ + ++ + ++K +V TGTL ++ R++A+ Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL + Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668 >gi|261868202|ref|YP_003256124.1| NAD-dependent DNA ligase LigA [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413534|gb|ACX82905.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans D11S-1] Length = 670 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 251/708 (35%), Positives = 394/708 (55%), Gaps = 46/708 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 ++++ L + + +H+ Y+ P I DSEYD L + A+ P+L + + P Sbjct: 4 SIQQQIDDLRKTLRHHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELVTA---DSPT 60 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G ++ H IP LSL+ ++ E+ F+ RI + F EPK+D Sbjct: 61 QRVGARPLSEFAQIRHEIPMLSLDNAFSNEEFFSFVKRIQDRLALVP-EPLTFCCEPKLD 119 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194 G ++I Y G AA RGDG +GED++ IR I IP L + N P +EVRGEV++ Sbjct: 120 GLAVSILYVNGVLSQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMP 179 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF-FVHGLGKTS-EIFAK 252 F LN+ + G K +ANPRNAA+G LR+L+P ++ + +G Sbjct: 180 HAGFERLNERALEHGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYSIGIAEGVELPP 239 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 +E LQ ++ +G PVNN ++ + ++++Y + + RS+L YDIDG V K+++ +LQ Sbjct: 240 THFERLQWLKSVGIPVNNEIQLCDGIENVLNFYRTIMAKRSSLGYDIDGAVLKINDIALQ 299 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG +++PRW I++KF ++ TRLLD++ QIGRTG +TPVA+LEPV++GG ++NAT Sbjct: 300 QRLGFISKAPRWAIAYKFPAEEVRTRLLDVEFQIGRTGAVTPVAKLEPVSVGGVTVSNAT 359 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D IK L I +GD VL++RAG+VIP+V+ ++ + + +P FP+ Sbjct: 360 LHNNDEIKRL-----------GISIGDIVLIRRAGDVIPQVIKLVHKAKKGN-KPIVFPT 407 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S ++R A RCTGGL C+AQ+ E LKHFVSR A +I+ +G + ++ Sbjct: 408 HCPVCDSLIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDSVGGKLIE 461 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 E I PAD+F L T + + G S N S+ K +N +L R Sbjct: 462 QLVDRE----LIHTPADLFKL------DLTTLTRLERMGPKSAENALASLEKAKNTTLAR 511 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LGIR VG A +LA ++ + + D L +VP VG+++A I Sbjct: 512 FIFALGIRDVGEATALNLANHFKTLEALQNA----------DLEQLQQVPDVGEVVANRI 561 Query: 613 VEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F++ N+ VE L+ + ++ + + K +V TGTL ++ R+ A+ + Sbjct: 562 FVFWREAHNVAVVEDLIAQGVHWETVDVQEVKENPFKGKTVVLTGTLSQMGRNDAKALLQ 621 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 QLGA VS +S KTD +I G+ GSKL KA +LGV++++EE+FL + Sbjct: 622 QLGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFLGWIN 669 >gi|260581847|ref|ZP_05849643.1| DNA ligase, NAD-dependent [Haemophilus influenzae NT127] gi|260095040|gb|EEW78932.1| DNA ligase, NAD-dependent [Haemophilus influenzae NT127] Length = 679 Score = 562 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 245/709 (34%), Positives = 393/709 (55%), Gaps = 45/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S + Sbjct: 10 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 66 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ ++ + F+ RI + F EPK Sbjct: 67 PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I Y G+ AA RGDG +GED++A IR I +P L + N P +EVRGEV+ Sbjct: 126 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 185 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250 + F LN + K +ANPRNAA+G LR+L+P ++ +G+G + Sbjct: 186 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 245 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ + Sbjct: 246 PTTHYACLQWLKSIGIPVNPEIRLCNGADEVLDFYRDIQNKRSSLGYDIDGTVLKINDIA 305 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 306 LQNELGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 365 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ R +A+P F Sbjct: 366 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 414 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S+++R A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 415 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 468 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E I PAD+F L T + + G S N +S+ K ++ +L Sbjct: 469 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGVKSAENALNSLEKAKSTTL 518 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGIR VG A +LA ++ + D L +VP VG+++A Sbjct: 519 ARFIFALGIREVGEATALNLANHFKTLDALKAA----------DLDQLQQVPDVGEVVAN 568 Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F++ N+ VE L+ + ++ + ++K +V TGTL ++ R++A+ Sbjct: 569 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 628 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL + Sbjct: 629 LQQLGAKVSGSVSNKTDFVIAGDAAGSKLAKAQELNIAVLTEEEFLAQI 677 >gi|15613212|ref|NP_241515.1| NAD-dependent DNA ligase LigA [Bacillus halodurans C-125] gi|15213980|sp|Q9KF37|DNLJ_BACHD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|10173263|dbj|BAB04368.1| DNA ligase (polydeoxyribonucleotide synthase (NAD+)) [Bacillus halodurans C-125] Length = 669 Score = 562 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 243/714 (34%), Positives = 383/714 (53%), Gaps = 54/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + A +++ L ++ + YY KP++ D+EYD L + AFP+L Sbjct: 1 MERNDAERKIEKLRNQLEEYGYHYYVLDKPLVSDAEYDGLMNELIELEEAFPELK---SD 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P ++GG KV H P LSL ++ +DLR F R+ + + + ++ E Sbjct: 58 TSPSVRVGGPPLPHFEKVEHRTPMLSLGNAFSDQDLRDFDRRVRQVVG----DEVTYSCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++ YE G+FV A RGDG +GED++ +R IP+IP L + +EVRGE Sbjct: 114 LKIDGLAISLIYESGRFVRGATRGDGTTGEDITQNLRTIPSIPLRLKEAVS--LEVRGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 ++ K F ALN+ A G + +ANPRNAA+G LR+L+P R+L+ F++ +G Sbjct: 172 FMPKRSFEALNEAKEAAGEERFANPRNAAAGSLRQLDPKLAAKRHLDAFIYAIGSVEGKE 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +E L ++ +GF +N + ++ Y N R+ LPY+IDG+V KVD + Sbjct: 232 LHSHHEGLNYLKTIGFKINPESAYCESIDEVIDYVNSWLERRADLPYEIDGIVIKVDNVN 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG A+SPRW I++KF ++ T LLDI + +GRTG++TP A L+PV + G + Sbjct: 292 FQEQLGYTAKSPRWAIAYKFPAEEVITTLLDITLNVGRTGVVTPTAELKPVTVAGTTVKR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV+++ R + +PFS Sbjct: 352 ASLHNEDLIR-----------EKDIRLGDSVVVKKAGDIIPEVVNVLTELRTGEERPFSM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S +VR A RC C AQ E L HFVSR A NI+GLG++ Sbjct: 401 PTHCPECGSELVRLEGE------VALRCINPQ-CPAQIREGLIHFVSRQAMNIDGLGEKV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ I AD++ L + ++ + G+ SV NL SI + SL Sbjct: 454 ITQLFEH----GLIHNVADLYKLNKD------ELLQLERMGEKSVNNLLASIETSKKSSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIR VG++ A++LA ++ + + + LI V +G+ +A Sbjct: 504 ERLLFGLGIRFVGSKAAKTLAMHFPTMTELRRA----------SYDELIAVNEIGEKMAA 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR------HEKNVSSEIENKKLVFTGTLQKIQRH 664 +IV +++ P ++ L E+ S K +V TG LQ + R Sbjct: 554 SIVSYFEKPEVNELIDELASLGVNMTYNGPKPIGEEEIADSPFAGKTVVLTGKLQALTRG 613 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+E + LG V+ +S+ TD+++ G++ GSKL KA++L ++I +EE + + Sbjct: 614 EAKEKIEALGGKVTGSVSKNTDLLVAGEDAGSKLTKAKELNIEIWDEEALVKAI 667 >gi|15603581|ref|NP_246655.1| NAD-dependent DNA ligase LigA [Pasteurella multocida subsp. multocida str. Pm70] gi|81636517|sp|Q9CKA9|DNLJ_PASMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|12722128|gb|AAK03800.1| Lig [Pasteurella multocida subsp. multocida str. Pm70] Length = 673 Score = 562 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 253/709 (35%), Positives = 395/709 (55%), Gaps = 46/709 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + + E+ L Q + YH+ Y+ P I D+EYD L R + +P P Sbjct: 1 MT-DSIKLEIEQLRQTLRYHEYQYHVLDNPQIPDAEYDRLFHRLKTLEQQYPQWF---SP 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G + + +V H +P LSL+ ++ E+L F+ RI + F E Sbjct: 57 DSPTQRVGAKPLSAFAQVQHEMPMLSLDNAFSDEELHAFVKRIQDRLVFSPKL-LEFCCE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190 PK+DG ++I Y GK AA RGDG +GED++ IR + IP L N P +EVRGE Sbjct: 116 PKLDGLAVSILYVDGKLTQAATRGDGSTGEDITLNIRTVRNIPLQLLMENPPTRLEVRGE 175 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF-FVHGLGKTSEI 249 V++S+ F LN++ +A G K +ANPRNAA+G LR+L+P ++ + +G I Sbjct: 176 VFMSQAGFEVLNEKALARGEKTFANPRNAAAGSLRQLDPRITSQRPLLLNAYSIGVAEGI 235 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 +E LQ ++ +G PVNN ++ ++++Y + RSTL YDIDG V KV++ Sbjct: 236 DLPDTHFERLQWLKSIGIPVNNEIQLCEGTENVLNFYRAIMQKRSTLGYDIDGTVIKVND 295 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ++LG +++PRW I++KF ++ T L ++ Q+GRTG +TPVA+L+PV + G + Sbjct: 296 IALQEELGFISKAPRWAIAYKFPAQEELTVLNAVEFQVGRTGAITPVAKLQPVFVAGVTV 355 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I L D+ +GD V+++RAG+VIP+++ ++ +R +A+ Sbjct: 356 SNATLHNGDEIARL-----------DVAIGDTVIIRRAGDVIPQIIGVLHEKRPANAEKI 404 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CP+C S +VR A RCTGGL C+AQ+ E LKHFVSR A +I+G+G Sbjct: 405 VFPTECPVCGSVIVRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGA 458 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E I PAD+F L + + G S N DS+ K + Sbjct: 459 KLIEQLVDREQ----IHTPADLFKL------DLNTLARLERMGLKSAQNALDSLQKAKKT 508 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFIF+LGIR VG A +LA ++ + + + L V VG+++ Sbjct: 509 TLARFIFALGIREVGEATALNLANHFKTLEALKEAT----------LEQLQEVQDVGEVV 558 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQ 667 A I F++ P N+ VE L+ + K+V + + K +V TGTL ++ R +A+ Sbjct: 559 ANRIFVFWREPHNVAVVEDLIAQGIHWETVEVKDVGDNPFKEKTVVLTGTLTQMGRTEAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + QLGA VS +S KTD+++ GD+ GSKL KA +LGVK+++E FL Sbjct: 619 ALLQQLGAKVSGSVSAKTDLVVAGDSAGSKLTKANELGVKVIDENTFLA 667 >gi|332306125|ref|YP_004433976.1| DNA ligase, NAD-dependent [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173454|gb|AEE22708.1| DNA ligase, NAD-dependent [Glaciecola agarilytica 4H-3-7+YE-5] Length = 677 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 259/709 (36%), Positives = 396/709 (55%), Gaps = 48/709 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + L+ L I+ ++ YY P + D+EYD L R I A PDL P+ P K Sbjct: 8 AQRLTQLINTINEYNYQYYVQDNPSVPDAEYDRLMRELLDIEKAHPDL---RSPDSPSQK 64 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + +V H +P LSL+ ++ +D+ F RI K + I F+ EPK+DG Sbjct: 65 VGGAALSAFEQVEHEVPMLSLDNAFDEDDMFAFEKRIKDRL--KITSEISFSCEPKLDGL 122 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196 ++I YE GK V AA RGDG GE+++ +R I +P L + P+ +EVRGEV +++ Sbjct: 123 AVSILYEDGKLVRAATRGDGRVGENITTNVRTIANVPLSLRGEDFPQRLEVRGEVIMTRA 182 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK--- 252 F LN+ I G+KP+ NPRNAA+G LR+L+P R L F+ + LG Sbjct: 183 GFDILNEAQIKKGKKPFVNPRNAAAGSLRQLDPKITAARPLLFYSYSLGLVENEQQPLGT 242 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 L+++ G P++ + A ++Y++++ +RS L YDIDG+V+KVD+ ++Q Sbjct: 243 THSARLKQLSDWGLPLSKELEVAQGAKECLTYFHKIGELRSQLSYDIDGVVFKVDDIAMQ 302 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG AR+PRW I+HKFA ++ + LLD++ Q+GRTG +TPVARL P +GG ++NAT Sbjct: 303 QTLGFVARAPRWAIAHKFAAQEEMSTLLDVEFQVGRTGAITPVARLAPTFVGGVTVSNAT 362 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN+D I L I++GD V+++RAG+VIP++V I+ ++R DA+ FP Sbjct: 363 LHNQDEINRL-----------GIKIGDSVIIRRAGDVIPQIVAIVADKRPDDAKDILFPE 411 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S V + A RCTGGL C AQ+ E +KHF SR A +I+GLG + ++ Sbjct: 412 SCPVCSSAVEKLEGE------AVARCTGGLYCKAQRKEAMKHFASRKALDIDGLGDKLIE 465 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 A ++ PAD F L + ++ G+ S NL +S+ K + +L + Sbjct: 466 QLVD----ADMVKSPADFFAL------DIAPLSSMERMGEKSAVNLVNSLGKSKKTTLAK 515 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F++SLGIR VG A++LA ++L+ Q D +L V VG I+AQ + Sbjct: 516 FLYSLGIREVGEATAQNLALHFLTLDAIEQA----------DLDALQAVSDVGIIVAQHV 565 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVT 671 V F++ N+ + AL + + V + + V TGTL + R++A+ + Sbjct: 566 VNFFKEEHNLEVISALQEAGVHWPKIEKIAVDELPLAGQVYVLTGTLNVMDRNQAKAKLQ 625 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA VS +S KTD ++ G+ GSKL KAQ LGVK+MNE++ L + + Sbjct: 626 SLGAKVSGSVSAKTDCLVAGEKAGSKLTKAQDLGVKVMNEDEMLAMFAE 674 >gi|146293460|ref|YP_001183884.1| DNA ligase, NAD-dependent [Shewanella putrefaciens CN-32] gi|166216243|sp|A4Y802|DNLJ_SHEPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145565150|gb|ABP76085.1| DNA ligase, NAD-dependent [Shewanella putrefaciens CN-32] Length = 685 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 248/713 (34%), Positives = 381/713 (53%), Gaps = 51/713 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 +S E A++ + +L Q ++ H+ YY P I DSEYD L + + FP + Sbjct: 13 DMSPENAQQVMQALSQSLNEHNIRYYVDDAPTITDSEYDRLMQCLIKLEAQFPQFIVA-- 70 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++GG ++TH P LSL+ + D F R+ + F Sbjct: 71 -DSPTQRVGGLALAKFDQITHLKPMLSLDNAFGEADFSAFHKRVTDKVG-----EVSFCC 124 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189 EPK+DG ++I Y G AA RGDG GED++ ++ I +IP L N PE++EVRG Sbjct: 125 EPKLDGLAVSILYRHGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGNDFPEVVEVRG 184 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 E ++ K F ALN+ A K + NPRNAA+G LR+L+ +R L F+ + LG Sbjct: 185 EAFMPKAAFEALNERARAKDEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEP 244 Query: 249 IFA---KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 K YE LQ+++ G PV+N ++ + + YY ++ + RS LP++IDG+V K Sbjct: 245 DSYSLGKTHYEQLQQLKSWGLPVSNEIKVCDELDQVFDYYKDILTRRSDLPFEIDGVVMK 304 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ + Q++LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV +GG Sbjct: 305 VNDIAQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGG 364 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++NATLHN D I+ L I++GD V+++RAG+VIP++V I+ R A Sbjct: 365 VTVSNATLHNADEIERL-----------GIKIGDTVIIRRAGDVIPQIVAIVPERRPETA 413 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 FP CP+C S V R A RC+GGL C AQ+ E +KHF SR A +I+G Sbjct: 414 TNIVFPHNCPVCGSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDIDG 467 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 +G + ++ E ++ PAD+F L + + + G S TNL +I Sbjct: 468 MGDKVVEQLIDKE----LVQSPADLFKLTA------SMMTMLDRMGMKSATNLAAAIEAA 517 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + +L RF+++LGIR VG A +LA ++ S L V VG Sbjct: 518 KTTTLARFLYALGIREVGEATAANLAAHFASLDALRVAT----------VEQLTAVEDVG 567 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRH 664 ++AQ + F+ P N+ ++AL+ + ++ + V TGTL ++ R+ Sbjct: 568 VVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSADAQPLKGQTWVLTGTLNQLNRN 627 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 A+ + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK+++EE L L Sbjct: 628 DAKAQLQTLGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIDEEALLAL 680 >gi|126726435|ref|ZP_01742276.1| DNA ligase [Rhodobacterales bacterium HTCC2150] gi|126704298|gb|EBA03390.1| DNA ligase [Rhodobacterales bacterium HTCC2150] Length = 705 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 298/723 (41%), Positives = 438/723 (60%), Gaps = 20/723 (2%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M K L +++ +AR EL L + I+ + Y+ P I D+EYD L+R I Sbjct: 1 MNKNPL----DMTMAEARSELKRLAKVIAAANSSYHTADAPEISDAEYDRLRRLNSEIEA 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 AFPDL R+ + P + +G E+ + KV H + LSL + ++ F+ R+ + Sbjct: 57 AFPDLKRA---DSPSDNVGAEVAEAFSKVKHDVRMLSLGNAFEDTEVDDFVGRVRSYLGH 113 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 + FT EPKIDG +++RYE G+ V AA RGDG +GE+V+ R I IP L N Sbjct: 114 V--GPLAFTAEPKIDGLSLSLRYENGELVQAATRGDGETGENVTHSARTISNIPHHL-DN 170 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFF 239 P+++EVRGEVY+ +DF ALN+ I G K +ANPRNAA+G LR+L+ +R L FF Sbjct: 171 APDLLEVRGEVYMRHDDFAALNERQIEKGEKTFANPRNAAAGSLRQLDANITRSRPLAFF 230 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G SE A Q + ++R LGF N+ + + ++++Y ++ RSTL YDI Sbjct: 231 AYAWGALSEPLATTQLAAVNRLRSLGFQTNDLTKLCASAQELITHYKSIEEQRSTLGYDI 290 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD+ LQ++LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL+ Sbjct: 291 DGVVYKVDDLELQRRLGFRSTTPRWAIAHKFPAELAWTRLRGIDIQVGRTGALSPVARLD 350 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG +++NATLHNEDYI+G G+ +R G+D RVGD V V RAG+VIPK+ D+ + Sbjct: 351 PVTVGGVVVSNATLHNEDYIQGRGNKGEEIRDGKDFRVGDWVQVYRAGDVIPKLADVNLA 410 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 ER DA P+ FP+ CP CQS +RD A RC+GGL C AQ +E+LKHFVSR Sbjct: 411 ERPDDAAPYEFPTICPECQSPAIRDDG------DAVRRCSGGLICPAQAIEKLKHFVSRG 464 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ-QTSTTKIENILGFGDVSVTNL 538 F+I+GLG +Q++ FF DP ++ PADIFTLQ R +++N G+GD S L Sbjct: 465 CFDIDGLGNKQVEAFF--GDPELPVKEPADIFTLQVRDADNGLKRLKNRDGWGDKSTQKL 522 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 + +I+++RNI L R IFSLGIRHVG A LA+++ SY F ++ +++ + L Sbjct: 523 FAAIDEKRNIPLNRLIFSLGIRHVGEAAANLLARHFSSYDKFIIAMDEATDRDSNAYQDL 582 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 I + VG++ A ++V + +++ L + ++ +S + K +VFTGTL Sbjct: 583 IAIDGVGEVFANSLVTAFSATSERASIDRLTQHLNIQDVVQADTGNSAVAGKIVVFTGTL 642 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +++ R +A+ GA VS +S+KTDI++ G GSK KA LG+ +++E +L L+ Sbjct: 643 EQMSRAEAKAQAEAAGAKVSGSVSKKTDILVAGPGAGSKATKAAALGITVIDEAAWLALI 702 Query: 719 QQY 721 + Sbjct: 703 AEE 705 >gi|120598462|ref|YP_963036.1| DNA ligase, NAD-dependent [Shewanella sp. W3-18-1] gi|166216244|sp|A1RII7|DNLJ_SHESW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|120558555|gb|ABM24482.1| DNA ligase, NAD-dependent [Shewanella sp. W3-18-1] Length = 685 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 248/713 (34%), Positives = 380/713 (53%), Gaps = 51/713 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 +S E A++ + +L Q ++ H+ YY P I DSEYD L + + FP + Sbjct: 13 DMSPENAQQVMQALSQSLNEHNIRYYVDDAPTITDSEYDRLMQCLIKLEAQFPQFIVA-- 70 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++GG ++TH P LSL+ + D F R+ + F Sbjct: 71 -DSPTQRVGGLALAKFDQITHLKPMLSLDNAFGEADFSAFHKRVTDKVG-----EVSFCC 124 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189 EPK+DG ++I Y G AA RGDG GED++ ++ I +IP L N PE++EVRG Sbjct: 125 EPKLDGLAVSILYRHGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGNDFPEVVEVRG 184 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 E ++ K F ALN+ A K + NPRNAA+G LR+L+ +R L F+ + LG Sbjct: 185 EAFMPKAAFEALNERARAKDEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEP 244 Query: 249 IFA---KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 K YE LQ+++ G PV+N ++ + YY ++ + RS LP++IDG+V K Sbjct: 245 DSYSLGKTHYEQLQQLKSWGLPVSNEIKVCEELDQVFDYYKDILTRRSDLPFEIDGVVMK 304 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ + Q++LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV +GG Sbjct: 305 VNDIAQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGG 364 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++NATLHN D I+ L I++GD V+++RAG+VIP++V I+ R A Sbjct: 365 VTVSNATLHNADEIERL-----------GIKIGDTVIIRRAGDVIPQIVAIVPERRPETA 413 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 FP CP+C S V R A RC+GGL C AQ+ E +KHF SR A +I+G Sbjct: 414 TDIVFPHNCPVCGSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDIDG 467 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 +G + ++ E ++ PAD+F L + + + G S TNL +I Sbjct: 468 MGDKVVEQLIDKE----LVQSPADLFKLTA------SMMTMLDRMGMKSATNLAAAIEAA 517 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + +L RF+++LGIR VG A +LA ++ S L V VG Sbjct: 518 KTTTLARFLYALGIREVGEATAANLAAHFASLDALRVAT----------VEQLTAVEDVG 567 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRH 664 ++AQ + F+ P N+ ++AL+ + ++ + V TGTL ++ R+ Sbjct: 568 VVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSADAQPLKGQTWVLTGTLNQLNRN 627 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 A+ + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK+++EE L L Sbjct: 628 DAKAQLQTLGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIDEEALLAL 680 >gi|91205008|ref|YP_537363.1| NAD-dependent DNA ligase LigA [Rickettsia bellii RML369-C] gi|122990942|sp|Q1RK40|DNLJ_RICBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91068552|gb|ABE04274.1| DNA ligase, NAD-dependent [Rickettsia bellii RML369-C] Length = 689 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 278/713 (38%), Positives = 430/713 (60%), Gaps = 29/713 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 IE ++ E+A+K L L +I+ ++ YY KP++ D+EYD L + FP L Sbjct: 4 IEKINEEEAKKLLIELADKIAQYNHAYYIEDKPLVSDAEYDQLFNTNLKLEQKFPHLILE 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 N P KIG ++ KVTH +P LSL +++ ED++ F+ RI F + + I Sbjct: 64 ---NSPSKKIGAKVENKFAKVTHQVPMLSLSNVFDEEDVKDFLDRIKSFLRLDQFSPI-- 118 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 EPKIDG Y+ G A RGDG+ GED++A I+ I P ++ PE++EVR Sbjct: 119 FCEPKIDGLSFAATYKNGILTTGATRGDGYIGEDITANIKTIKDFPHKINNA-PELLEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE+YI KNDF +LN E G+ +ANPRNAA+G LR+L+P+ R L +FV+ +G Sbjct: 178 GEIYIEKNDFTSLNQEQEQQGKDKFANPRNAAAGSLRQLDPSVTAKRPLKYFVYAIGSAK 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E A Q ++L K + LGF VN + AN+ I S+Y +K+ R LPY+IDG+VYK++ Sbjct: 238 EELANSQDQLLAKFKELGFNVNEIGKLANSEEEIFSFYEYLKTNRKNLPYEIDGVVYKLN 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +F+LQ ++G ARSPR+ +HKF T+LL I +Q+GRTG LTPVA LEP+ IGG + Sbjct: 298 DFALQDRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVI 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN I +D+RVGD V ++RAG+VIP++ + + +R DA Sbjct: 358 VSRATLHNYQEIAR-----------KDVRVGDYVFLQRAGDVIPQITGVDLAKRSADATT 406 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P FCP C S++ RC GL C AQ ER++HFVS++A +IEGLG Sbjct: 407 FDPPLFCPSCNSKLHY------VPEDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q++F I P DIF L+ + + S TK+EN+ G+G SV NL+++I K +N Sbjct: 461 RKQVEFLIDK----GLISNPYDIFFLKEKNEASLTKLENMDGWGKKSVENLFNNIEKSKN 516 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +SL RFI++LGIRH+G + A+ L + + SY+NF ++ + ++ + + L + +GD Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLTREFGSYENFIAQMELLKENDPEIYQKLNNLDGIGDK 576 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + I++F+ NI ++ L + ++ + + SS + K +VFTG++ + R +A+ Sbjct: 577 MLVDIIDFFDVKENIELIKNLSEVLNIEDYKETREQSS-LTGKIVVFTGSMPTLSRAEAK 635 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +LGA V+A +S TD++I G++ GSKL+KA++LG+KI++E ++L L++ Sbjct: 636 ATAEKLGAKVAASVSSNTDLVIAGEDAGSKLKKAKELGIKIIDEAEWLTLVRD 688 >gi|301169841|emb|CBW29445.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae 10810] Length = 670 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 243/707 (34%), Positives = 391/707 (55%), Gaps = 45/707 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S + Sbjct: 1 MTNIQTQLDNLRKTLRQYEYEYHVLDHPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ ++ + F+ RI + F EPK Sbjct: 58 PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVNRIEDRLILLP-KPLTFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I Y G+ AA RGDG +GED++A IR I +P L + N P +EVRGEV+ Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250 + F LN + K +ANPRNAA+G LR+L+P ++ +G+G + Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ + Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ R +A+P F Sbjct: 357 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S+++R A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E I PAD+F L T + + G S N +S+ ++ +L Sbjct: 460 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGAKSAENALNSLENAKSTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGIR VG A +LA ++ + + L +VP VG+++A Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLDTLKDA----------NLEELQQVPDVGEVVAN 559 Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F++ N+ VE L+ + ++ + ++K +V TGTL ++ R++A+ Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLA 666 >gi|88800009|ref|ZP_01115580.1| DNA ligase, NAD-dependent [Reinekea sp. MED297] gi|88777287|gb|EAR08491.1| DNA ligase, NAD-dependent [Reinekea sp. MED297] Length = 674 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 259/712 (36%), Positives = 388/712 (54%), Gaps = 45/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + +L Q+I +D YY ++ I D EYD L I P P Sbjct: 1 MTELHDRYQALIQQIRRYDHEYYVLNESAIPDVEYDRLMEELKRIESEHPQWV---TPQS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++ G V H +P LSL+ +N +DL F+ R+ D + I F EPK Sbjct: 58 PTQRVAGAPQAGFETVEHRMPMLSLDNAFNHDDLGAFVKRLKDRLN--DPSPIEFACEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG +++ YE+G V A RGDG +GED++A +R I +IP L + PE++EVRGE+Y Sbjct: 116 LDGIAVSLLYEQGHLVRGATRGDGTTGEDITANVRTIRSIPLSLQGDGWPEVLEVRGEIY 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSEIF 250 + K F +NDE G K + NPRNAASG LR+L+ TR L + +G Sbjct: 176 MPKAGFERMNDEARERGDKVFVNPRNAASGSLRQLDSRLTATRPLEMCCYSVGVFEGGTL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 QY+++QK G +N + G++ YY++++ R+ LPY+IDG+VYKV+ F Sbjct: 236 PDTQYQLMQKFSEWGLKINPEMALVTDVQGLLDYYDQLEQKRNGLPYEIDGIVYKVNSFG 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG +R+PRW I+ KF ++ T LLD++ Q+GRTG LTPVARLEPV +GG ++N Sbjct: 296 LQRRLGFVSRAPRWAIARKFPAQEEVTTLLDVEFQVGRTGALTPVARLEPVFVGGVTVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L D+ +GDRV+V+RAG+VIP+VV + +R P+A+P + Sbjct: 356 ATLHNMDEIERL-----------DVHIGDRVIVRRAGDVIPQVVKSLAEDRSPEARPITA 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C S+V R A RCTGG+ CSAQ+ E LKHFVSR A +I+G G++ Sbjct: 405 PEECPECGSKVDRVAGE------AVMRCTGGMICSAQRREALKHFVSRKAMDIDGFGEKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D I +DIF L + + ++ + GD S NL +I+ R +L Sbjct: 459 VDALL----AGNKIHAASDIFELTQEEVSA------LERMGDKSAANLIAAIDAARETTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGIR VG AR+LA ++ + + L+ V VG +A Sbjct: 509 ARFIFALGIREVGETTARNLAMHFGTIEKLMSATEA----------QLLDVEDVGPKVAA 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +V ++ +N ++ L+ +S + + V TG + ++ R +A++Y+ Sbjct: 559 HVVNYFSEEQNRIEIQRLIALGVTWDDPIPDQSASVLAGQTWVVTGKISQMSRDEAKDYL 618 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 QLGA V+ +S KT ++ G GSKL KA++LGV +M+E +F+ L Q Sbjct: 619 LQLGAKVAGSVSAKTTQVVAGPGAGSKLRKAEELGVPVMDEAEFVEWLTQQG 670 >gi|54308062|ref|YP_129082.1| NAD-dependent DNA ligase LigA [Photobacterium profundum SS9] gi|81615410|sp|Q6LTU5|DNLJ_PHOPR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|46912488|emb|CAG19280.1| putative NAD-dependent DNA ligase [Photobacterium profundum SS9] Length = 676 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 245/716 (34%), Positives = 398/716 (55%), Gaps = 48/716 (6%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 +S + +++L +L ++++YH YY P I D+EYD + ++ A+ P+L Sbjct: 4 SEMSTD-IQQQLDTLREQLAYHGHRYYVEDNPEIPDAEYDRMMQQLLALEAEHPELM--- 59 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 + P ++GG S +V H +P LSL+ +N E+L F R+ + + Sbjct: 60 SVDSPSQRVGGTPLDSFTQVKHELPMLSLDNAFNDEELNAFEKRLLDRLITAGH--VSYC 117 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188 EPK+DG +++ YE G V AA RGDG +GE+++ +R I +IP L P +EVR Sbjct: 118 CEPKLDGLAVSLMYENGVLVQAASRGDGATGENITTNVRTIRSIPLKLQGEGWPVRLEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247 GEV++ K F LN + G K +ANPRNAA+G LR+L+ +F+ + +G Sbjct: 178 GEVFMPKKGFDELNARALKKGDKAFANPRNAAAGSLRQLDSKIAATRPLSFYAYSVGVVE 237 Query: 248 -EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 A+ QYE L +++ G P+ +RQ T + +++YY ++ R +L Y+IDG+V KV Sbjct: 238 GMDLAESQYERLVQLKGWGIPMCPEIRQLKTINDVIAYYQDIGERRQSLAYEIDGVVIKV 297 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q+QLG AR+PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEP+ +GG Sbjct: 298 DDVETQEQLGFVARAPRWAIAYKFPAQEEMTLLNNVEFQVGRTGAITPVAKLEPIFVGGV 357 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++NATLHN D + L + +GD V+++RAG+VIP++V ++ + R +AQ Sbjct: 358 TVSNATLHNADEVARL-----------GVMIGDTVIIRRAGDVIPQIVSVVESRRPDNAQ 406 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 +FP CP+C+S V R A RCTGGL C AQ+ E LKHFVSR A +++G Sbjct: 407 AITFPITCPVCESNVERVEGE------AVARCTGGLFCQAQRKEALKHFVSRKALDVDGC 460 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++ ++ E + PA +F L S + + G S L DS+ + Sbjct: 461 GEKVIEQLVDRE----MVTTPAGLFKL------SAGIVTVLDRMGPKSAQKLVDSLANSK 510 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI+SLGIR VG A +LA ++ + + L+ VP VG+ Sbjct: 511 ETTLPRFIYSLGIREVGEATAANLANHFETLEAITAASK----------EQLLVVPDVGE 560 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 ++A ++ F++ N+ VE L+ P+I + E+ V ++ K +V TG+L ++ R Sbjct: 561 VVANNLLNFFREAHNMDVVEDLIAVGIHWPAIDKPEEGVELPLDGKVVVLTGSLSQLTRS 620 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ + LGA V+ +S KTD+++ G+ GSKL KAQ+L ++I +E+ + + + Sbjct: 621 DAKAALQALGAKVTGSVSSKTDLLVAGEAAGSKLTKAQELDIEIWDEQALVDFMNR 676 >gi|145633173|ref|ZP_01788905.1| DNA ligase [Haemophilus influenzae 3655] gi|144986399|gb|EDJ92978.1| DNA ligase [Haemophilus influenzae 3655] Length = 670 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 241/709 (33%), Positives = 389/709 (54%), Gaps = 45/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S + Sbjct: 1 MTNIQTQLDNLRKTLRQYEYEYHVLDNPTVPDSEYDRLFHQLKALELEHPEFLTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ ++ + F+ RI + F EPK Sbjct: 58 PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I Y G AA RGDG +GED++A IR I +P L + N P +EVRGEV+ Sbjct: 117 LDGLAVSILYVNGVLTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250 + F LN + K +ANPRNAA+G LR+L+P ++ + +G + Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYSIGIAEGVNL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ + Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ R +A+P F Sbjct: 357 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S+++R A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E I PAD+F L T + + G S N +S+ ++ +L Sbjct: 460 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGAKSAENALNSLENAKSTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGIR VG A +LA ++ + + L +V VG+++A Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLDALKDA----------NLEELQQVSDVGEVVAN 559 Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F++ N+ VE L+ + ++ + ++K +V TGTL ++ R++A+ Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL + Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668 >gi|157827661|ref|YP_001496725.1| NAD-dependent DNA ligase LigA [Rickettsia bellii OSU 85-389] gi|166216232|sp|A8GXT8|DNLJ_RICB8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157802965|gb|ABV79688.1| NAD-dependent DNA ligase LigA [Rickettsia bellii OSU 85-389] Length = 689 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 278/713 (38%), Positives = 430/713 (60%), Gaps = 29/713 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 IE ++ E+A+K L L +I+ ++ YY KP++ D+EYD L + FP L Sbjct: 4 IEKINEEEAKKLLIELADKIAQYNHAYYIEDKPLVSDAEYDQLFNTNLKLEQKFPHLILE 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 N P KIG ++ KVTH +P LSL +++ ED++ F+ RI F + + I Sbjct: 64 ---NSPSKKIGAKVENKFAKVTHQVPMLSLSNVFDEEDVKDFLDRIKSFLRLDQFSPI-- 118 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 EPKIDG Y+ G A RGDG+ GED++A I+ I P ++ PE++EVR Sbjct: 119 FCEPKIDGLSFAATYKNGILTTGATRGDGYIGEDITANIKTIKDFPHKINNA-PELLEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE+YI KNDF +LN E G+ +ANPRNAA+G LR+L+P+ R L +FV+ +G Sbjct: 178 GEIYIEKNDFTSLNQEQEQQGKDKFANPRNAAAGSLRQLDPSVTAKRPLKYFVYAIGSAK 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E A Q ++L K + LGF VN + AN+ I S+Y +K+ R LPY+IDG+VYK++ Sbjct: 238 EELANSQDQLLAKFKELGFNVNEIGKLANSEEEIFSFYEYLKTNRKNLPYEIDGVVYKLN 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +F+LQ ++G ARSPR+ +HKF T+LL I +Q+GRTG LTPVA LEP+ IGG + Sbjct: 298 DFALQDRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVI 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN I +D+RVGD V ++RAG+VIP++ + + +R DA Sbjct: 358 VSRATLHNYQEIAR-----------KDVRVGDYVFLQRAGDVIPQITGVDLAKRSADATT 406 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P FCP C S++ RC GL C AQ ER++HFVS++A +IEGLG Sbjct: 407 FDPPLFCPSCNSKLHY------VPEDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q++F I P DIF L+ + + S TK+EN+ G+G SV NL+++I K +N Sbjct: 461 RKQVEFLIDK----GLISNPYDIFFLKEKNEASLTKLENMDGWGKKSVENLFNNIEKSKN 516 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +SL RFI++LGIRH+G + + LA+ + SY+NF ++ + ++ + + L + +GD Sbjct: 517 VSLPRFIYALGIRHIGEQNVKLLAREFGSYENFIAQMELLKENDPEIYQKLNNLDGIGDK 576 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + I++F+ NI ++ L + ++ + + SS + K +VFTG++ + R +A+ Sbjct: 577 MLVDIIDFFDVKENIELIKNLSEVLNIEDYKETREQSS-LTGKIVVFTGSMPTLSRAEAK 635 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +LGA V+A +S TD++I G++ GSKL+KA++LG+KI++E ++L L++ Sbjct: 636 ATAEKLGAKVAASVSSNTDLVIAGEDAGSKLKKAKELGIKIIDEAEWLTLVRD 688 >gi|288941063|ref|YP_003443303.1| DNA ligase, NAD-dependent [Allochromatium vinosum DSM 180] gi|288896435|gb|ADC62271.1| DNA ligase, NAD-dependent [Allochromatium vinosum DSM 180] Length = 696 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 249/728 (34%), Positives = 381/728 (52%), Gaps = 54/728 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + + +L EI YH+ YY P I D+EYD L + P L P Sbjct: 1 MTSSAITQRIEALRAEIRYHNHRYYVLDDPEIPDAEYDRLFAELQQLEAEHPALI---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G E L +V H++P +SL+ + E L +F R+ + + + +T E Sbjct: 58 DSPTQRVGAEPRPELGEVRHAVPMISLDNAMSDERLVEFHRRLTVAL--PEFDPVLYTAE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190 PK DG IT+RYE G V AA RGDG GEDV+ R IP +P L + PE++EVRGE Sbjct: 116 PKFDGLAITLRYESGVLVLAATRGDGTRGEDVTHNARTIPNVPLRLLGEDWPEVLEVRGE 175 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VY+ + F LN + G +P+ANPRNAA+G LR+L+P R L F +G G+ + Sbjct: 176 VYMPRAGFDRLNARLEERGERPFANPRNAAAGSLRQLDPRVTARRPLRFCAYGWGEIAGE 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + Q+EMLQ++ G P++ +RQ G Y+ + R+TL YDIDG+V+K+D Sbjct: 236 PGESQFEMLQRLAGWGLPISPELRQVAGLDGCRDYFEALGRRRATLDYDIDGVVFKLDRL 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 S Q LG A PRW I+ KF ++A T + ++ Q+GRTG +TPVARL PV +GG ++ Sbjct: 296 SAQTALGATAHHPRWAIARKFPAQEALTEVEAVEFQVGRTGAVTPVARLRPVQVGGVTVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN D ++ +D+R+GD V ++RAG+VIP++V ++V R A+ Sbjct: 356 KATLHNLDEVRR-----------KDVRIGDSVYIRRAGDVIPEIVRVLVERRPDGARLVE 404 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S V+R A RC+GGL C AQ+ E ++HF +R A +IEGLG++ Sbjct: 405 LPTQCPVCGSDVIRPEGE------AVARCSGGLWCPAQRKEAIRHFAARRALDIEGLGEK 458 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ E +R PAD++ L ++ + G+ S NL ++ + + Sbjct: 459 LIEQLVDLE----WVREPADLYRLTAD------RLALLERMGEKSAANLIAALEHSKRTT 508 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RF+F+LGIR VG A+ LA++ + L+ + +G ++A Sbjct: 509 LARFVFALGIREVGETTAQLLAEHVGGIEALMAA----------SVEDLVAIKGIGPVVA 558 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRH------EKNVSSEIENKKLVFTGTLQKIQR 663 IV F N A+ LL + ++ + K V TGTL + R Sbjct: 559 AHIVGFMAQAHNREAIAHLLAAGIHWPEVERSDSMPAEPSAAPLTGKTFVITGTLSR-PR 617 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 + + LGA V+ +S+KTD ++ G GSKL KA+ LGV +++E L+ + Sbjct: 618 EEFAARLQGLGAKVTGSVSKKTDYLLAGAEAGSKLAKAEALGVVVIDEAGLESLIARLQA 677 Query: 724 TLRIHDDD 731 +H DD Sbjct: 678 ---LHGDD 682 >gi|294140434|ref|YP_003556412.1| DNA ligase, NAD-dependent [Shewanella violacea DSS12] gi|293326903|dbj|BAJ01634.1| DNA ligase, NAD-dependent [Shewanella violacea DSS12] Length = 683 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 252/725 (34%), Positives = 393/725 (54%), Gaps = 50/725 (6%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M+ ++ + +I+ +E++ L ++ H+ CYY P I D+EYD L ++ + Sbjct: 1 MQNDKIQDHASFNIQAVAQEIAELTDILNGHNYCYYVDDAPSIPDAEYDRLLKQLKVLET 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 A P+ P+ P ++GG +V H P LSL+ +++ E+ F RI Sbjct: 61 AHPEYCF---PDSPTQRVGGVALAKFDQVVHLKPMLSLDNVFSDEEFEAFYNRI----ND 113 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL- 179 K D + F EPK+DG ++I Y G + A RGDG +GED++ +R I +IP L Sbjct: 114 KTDTAPTFCCEPKLDGLAVSILYRDGIYERAGTRGDGKTGEDITENVRTILSIPMKLRGE 173 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238 N P ++EVRGEV + K F +LN+ A G K + NPRNAA+G LR+L+ +R L F Sbjct: 174 NFPPLLEVRGEVIMPKQAFDSLNERARAKGEKEFVNPRNAAAGSLRQLDSKITASRALGF 233 Query: 239 FVHGLGKT---SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295 + + LG + A Y+ L +++ GFPV+ V+Q ++ +++YY ++ + RS+L Sbjct: 234 YAYALGVVEPETWELADHHYDQLMQLKSWGFPVSAEVKQCDSVKDVIAYYTDIMTRRSSL 293 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 Y+IDG+V KVD Q LG A++PRW + KF ++ T L +D Q+GRTG +TPV Sbjct: 294 AYEIDGVVIKVDNIDQQAMLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPV 353 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 ARL+P+ +GG ++NATLHN D I L +++ D V+V+RAG+VIP++V Sbjct: 354 ARLKPIFVGGVTVSNATLHNADEIARL-----------GVKIKDTVIVRRAGDVIPQIVA 402 Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475 I+ ++R DA FP+ CP+C S V R A RCTGGL C AQ+ E +KHF Sbjct: 403 IVADKRPDDASEIEFPTTCPVCDSLVERLEGE------AVARCTGGLFCEAQRKEAIKHF 456 Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 SR A +I+G+G + ++ E + PAD+F L S + + + G S Sbjct: 457 ASRKALDIDGMGDKVVEQLIDKE----LVESPADLFKL------SASAMTMLDRMGLKSA 506 Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 TNL +I + + RF+++LGIR VG A +LA Y+ S + Sbjct: 507 TNLVKAIEVAKQTTFSRFLYALGIREVGEATAANLASYFKSLDKLKAA----------NA 556 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVF 654 I+V VG I+AQ + F+ N+ V++L++ E S ++ + V Sbjct: 557 EEFIKVDDVGIIVAQHLTHFFAQEHNLAVVDSLIQAGVNWPAIEEVAEESLSLKGQTWVL 616 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TGTL ++ R+ A+ + LGA V+ +S+ T ++ G+ GSKL KAQ LG+KI++EE Sbjct: 617 TGTLTQLNRNDAKAQLQALGAKVAGSVSKNTSCLVAGEAAGSKLTKAQDLGIKILDEEGL 676 Query: 715 LFLLQ 719 L +L Sbjct: 677 LAVLA 681 >gi|145634259|ref|ZP_01789970.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittAA] gi|145268703|gb|EDK08696.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittAA] Length = 670 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 242/709 (34%), Positives = 390/709 (55%), Gaps = 45/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S + Sbjct: 1 MTNIQTQLDNLRKTLRQYEFEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ ++ + F+ RI + F EPK Sbjct: 58 PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I Y G AA RGDG +GED++A IR I +P L + N P +EVRGEV+ Sbjct: 117 LDGLAVSILYVNGVLTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250 + F LN + K +ANPRNAA+G LR+L+P ++ + +G + Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYSIGIAEGVNL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ + Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ R +A+P F Sbjct: 357 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S+++R A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E I PAD+F L T + + G S N +S+ ++ +L Sbjct: 460 IEQLVNRE----LIHTPADLFKL------DLTTLTRLERMGAKSAENALNSLENAKSTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGIR VG A +LA ++ + + L +VP VG+++A Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLDALKDA----------NLEELQQVPDVGEVVAN 559 Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F++ N+ VE L+ + ++ + ++K +V TGTL ++ R++A+ Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL + Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668 >gi|294340191|emb|CAZ88563.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Thiomonas sp. 3As] Length = 686 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 249/718 (34%), Positives = 377/718 (52%), Gaps = 52/718 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 Q + + L EI+ D YY P+ D++YDAL R I P+L P+ P Sbjct: 8 AQPAERATQLRAEIARLDHAYYVLDAPLAPDADYDALFRELQQIEADHPEL---RTPDSP 64 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWN--IEDLRKFITRIYRFWQK-KDDNSIFFTLE 131 ++GG V H++P LS++ + E F R+ DD + + E Sbjct: 65 TQRVGGAPLPEFAPVRHAVPMLSIQTETDTTPEGAAAFDQRVRNRLGLSADDPPVNYCAE 124 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG I++RYE G+ V AA RGDG +GEDV+ +R I ++P L N P ++EVRGEV Sbjct: 125 LKFDGLAISLRYEHGQLVQAATRGDGETGEDVTQNVRTIRSVPLQLRGNAPAVLEVRGEV 184 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT--SE 248 + + DF N G NPRN A+G +R+L+P R L F+ +G G+ Sbjct: 185 LMKRADFERYNARQRDKGLPTLVNPRNGAAGSIRQLDPAIAAQRPLAFYAYGWGEIAGWA 244 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + ML + G PV ++ ++ + + R +LP+DIDG+VYKVD Sbjct: 245 QQPDTHHAMLDALETFGLPVAPQRVHGPGAQTLIDFHARIAAARDSLPFDIDGVVYKVDS 304 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ++LG R R P W ++HK+ ++ ST+++ IDIQ+GRTG LTPVA+LEPV +GG + Sbjct: 305 LALQRELGFRNREPVWAVAHKYPAQERSTKVIGIDIQVGRTGKLTPVAKLEPVFVGGVTV 364 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQP 427 TNATLHNED ++ +D+RVGD V+V+RAG+VIP+VV ++++ R D +P Sbjct: 365 TNATLHNEDEVRR-----------KDVRVGDTVIVRRAGDVIPEVVSVVLSARPADVGEP 413 Query: 428 FSFPS----FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 F CP+C S +VR+ A RCTGGL C+AQ+ + + H+ SR A +I Sbjct: 414 FDLYQRLGGQCPVCGSAIVREAGE------ADWRCTGGLFCAAQRKQAILHYASRRAMDI 467 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGLG++ +D A +R+ D++ L K+ + + S NL ++ Sbjct: 468 EGLGEKLVDQLVD----AGIVRVLPDLYRL------GLLKLAALDRMAEKSAANLLQALQ 517 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + +L RF+++LGIRHVG A+ LA+++ L+ VP Sbjct: 518 ASKTTTLARFLYALGIRHVGEATAKDLARHFGGLDAILDAP----------LEQLLEVPD 567 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 VG ++AQ+I F+ P N VE L S +++ + K LV TGTL + Sbjct: 568 VGPVVAQSIRTFFDQPHNREVVEQLRACGVHWSEAAPDRDAPKPLAGKTLVLTGTLPTLS 627 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R +A+ + G V +S+KTD ++ G GSKL KAQ+LGV +++E + L LL Sbjct: 628 REEAKARIEAAGGKVVGSVSKKTDYVVAGAEAGSKLAKAQELGVTVLDEAELLKLLAD 685 >gi|117927902|ref|YP_872453.1| DNA ligase, NAD-dependent [Acidothermus cellulolyticus 11B] gi|166215382|sp|A0LSQ7|DNLJ_ACIC1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|117648365|gb|ABK52467.1| DNA ligase, NAD-dependent [Acidothermus cellulolyticus 11B] Length = 695 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 242/717 (33%), Positives = 367/717 (51%), Gaps = 42/717 (5%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S A + + L +EI H YY P I D+EYDAL R + I +A+P+L P+ Sbjct: 12 SAADAARRHAELVKEIEEHAYRYYVLDAPTISDAEYDALMRELEEIENAYPEL---RTPD 68 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P K+ G V H LSL+ ++ +LR +I R+ + + EP Sbjct: 69 SPTQKVQGAPAAHFAPVEHLERMLSLDNVFTEGELRAWIARVEKEVGTDA----AYLCEP 124 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR--VLSLNIPEIIEVRGE 190 K+DG + + YE G V A RGDG GEDV+A I+AI +P N+P ++EVRGE Sbjct: 125 KVDGLAVDLVYEDGVLVRGATRGDGRVGEDVTANIKAIRNVPHRLHRDGNLPALLEVRGE 184 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VY DF LN ++A G+ P+ANPRNAA+G LR+ +P +R L VHG+G + Sbjct: 185 VYFPVADFAELNAGLVAAGKAPFANPRNAAAGSLRQKDPRVTASRPLRLVVHGIGAHQGL 244 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A Q E + G PV+ + A T I+ Y R L ++IDG+V KVD+F Sbjct: 245 AAARQSEAYVALAAWGLPVSERAKVATTTKEILDYIAYYAEHRHDLEHEIDGVVVKVDQF 304 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG A++PRW +++K+ ++ +T+LLDI + +GRTG +TP A +EPV + G+ +T Sbjct: 305 ALQRRLGATAKAPRWAVAYKYPPEEVTTKLLDIQVNVGRTGRVTPFAVMEPVRVAGSTVT 364 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D IK + + +GD V+V++AG+VIP+VV +V R + F Sbjct: 365 NATLHNADEIKR-----------KGVLIGDTVVVRKAGDVIPEVVGPVVALRDGSEREFV 413 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FPS CP C + +VR+ RC +C AQ ERL H SR A +IE LG + Sbjct: 414 FPSHCPACGTPLVRENG------GVDIRCPNARSCPAQLRERLFHIASRGALDIESLGYE 467 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + +S+ + D+F L + + G + L +++ + Sbjct: 468 AANALLESK----LLADEGDLFLLTPEKLRTVPFFTKKDGELSANAVKLLENLESAKTRP 523 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R + +L IRHVG AR+LA+ + S L V VG +IA Sbjct: 524 LWRVLVALSIRHVGPTAARALAREFGSIDAIRNA----------SVDELAAVEGVGRVIA 573 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++I +++ + V +++ + + +V TGTL + R A E Sbjct: 574 ESIRDWFAVDWHQEIVAKWSAAGVRM-AEEQRSAAKPLAGITVVVTGTLSRWSRDSAIEA 632 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 + G + +S+KTD ++VG+NPGSK +KA+QLG+ I++EE F LL + R Sbjct: 633 IQDAGGRAAGSVSKKTDFVVVGENPGSKYDKARQLGIPILDEEGFATLLTKGPDAAR 689 >gi|319426762|gb|ADV54836.1| DNA ligase, NAD-dependent [Shewanella putrefaciens 200] Length = 685 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 248/713 (34%), Positives = 381/713 (53%), Gaps = 51/713 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 +S E A++ + +L Q ++ H+ YY P I DSEYD L + + FP + Sbjct: 13 DMSPENAQQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQCLIKLEAQFPQFIVA-- 70 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++GG + ++TH P LSL+ + D F R+ + F Sbjct: 71 -DSPTQRVGGLALVKFDQITHLKPMLSLDNAFGEADFSAFHKRVTDKVG-----EVSFCC 124 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189 EPK+DG ++I Y G AA RGDG GED++ ++ I +IP L N PE++EVRG Sbjct: 125 EPKLDGLAVSILYRHGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGNDFPEVVEVRG 184 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 E ++ K F ALN+ A K + NPRNAA+G LR+L+ +R L F+ + LG Sbjct: 185 EAFMPKAAFEALNERARAKDEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEP 244 Query: 249 IFA---KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 K YE LQ+++ G PV+N ++ + YY ++ + RS LP++IDG+V K Sbjct: 245 DSYSLGKTHYEQLQQLKSWGLPVSNEIKVCEELDQVFDYYKDILTRRSDLPFEIDGVVMK 304 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ + Q++LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV +GG Sbjct: 305 VNDIAQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGG 364 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++NATLHN D I+ L I++GD V+++RAG+VIP++V I+ R A Sbjct: 365 VTVSNATLHNADEIERL-----------GIKIGDTVIIRRAGDVIPQIVAIVPERRPETA 413 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 FP CP+C S V R A RC+GGL C AQ+ E +KHF SR A +I+G Sbjct: 414 TDIVFPHNCPVCGSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDIDG 467 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 +G + ++ E ++ PAD+F L + + + G S TNL +I Sbjct: 468 MGDKVVEQLIDKE----LVQSPADLFKLTA------SMMTMLDRMGMKSATNLAAAIEAA 517 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + +L RF+++LGIR VG A +LA ++ S L V VG Sbjct: 518 KTTTLARFLYALGIREVGEATAANLAAHFASLDALRVAT----------VEQLTAVEDVG 567 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRH 664 ++AQ + F+ P N+ ++AL+ + ++ + V TGTL ++ R+ Sbjct: 568 VVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSADAQPLKGQTWVLTGTLNQLNRN 627 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 A+ + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK+++EE L L Sbjct: 628 DAKAQLQTLGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIDEEALLAL 680 >gi|229846132|ref|ZP_04466244.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 7P49H1] gi|229811136|gb|EEP46853.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 7P49H1] Length = 670 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 241/709 (33%), Positives = 389/709 (54%), Gaps = 45/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S + Sbjct: 1 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ ++ + F+ RI + F EPK Sbjct: 58 PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KQLTFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I Y G AA RGDG GED++A IR I +P L + N P +EVRGEV+ Sbjct: 117 LDGLAVSILYVNGVLTQAATRGDGTIGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250 + F LN + K +ANPRNAA+G LR+L+P ++ +G+G + Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ + Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYQDIQNKRSSLGYDIDGTVLKINDIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +++PRW ++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 297 LQNELGFISKAPRWATAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ R +A+P F Sbjct: 357 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S+++R A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E I PAD+F L T + + G S N +S+ ++ +L Sbjct: 460 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGTKSAENALNSLENAKSTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGIR VG A +LA ++ + + L +VP VG+++A Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLDALKDA----------NLEELQQVPDVGEVVAN 559 Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F++ N+ VE L+ + ++ + ++K +V TGTL ++ R++A+ Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + QLGA VS +S KTD +I G+ GSKL KAQ+L + ++ EE+FL + Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGNAAGSKLAKAQELNITVLTEEEFLAQI 668 >gi|302878427|ref|YP_003846991.1| DNA ligase, NAD-dependent [Gallionella capsiferriformans ES-2] gi|302581216|gb|ADL55227.1| DNA ligase, NAD-dependent [Gallionella capsiferriformans ES-2] Length = 674 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 253/715 (35%), Positives = 389/715 (54%), Gaps = 50/715 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + ++ + +L EI H+ YY P + D+ YD L R + P+ S Sbjct: 1 MVSAVVQQRIKALRSEIEAHNYQYYVLDAPTVPDAGYDTLFRELQRLEAQHPEFLTS--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G +V H P LSL ++ +++ F R+ + + + +E Sbjct: 58 DSPTQRVGAAPLKYFAEVPHRTPMLSLNNAFSADEVIAFDARVRDALGI---DEVEYAVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI----IEV 187 K DG I + Y G FV A RGDG +GEDV+ +R + +IP L E+ +EV Sbjct: 115 LKFDGLAINLSYRNGIFVQGATRGDGSTGEDVTENLRTVRSIPLRLKEANGEVLCADVEV 174 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-K 245 RGEV + DF LN++ G K + NPRNAA+G LR+L+ TR+L+F+ +G+G Sbjct: 175 RGEVLMFTRDFDLLNEQQRLNGEKEFVNPRNAAAGSLRQLDSAVTATRHLSFYAYGVGLC 234 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + + ++ G PV G++ YY EM ++R+ LP+ IDG+VYK Sbjct: 235 DGVNLSGKHDLQMAQLADWGVPVATQRSTVQGVAGLLDYYKEMGALRAALPFAIDGVVYK 294 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ + Q+ LG +R+PR+ I+HKF ++A T LLDID+Q+GRTG LTPVARL PV +GG Sbjct: 295 VNDIAQQQMLGFVSRAPRFAIAHKFPAEEAMTTLLDIDVQVGRTGALTPVARLTPVFVGG 354 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +TNATLHNED I+ +D+R+GD V+V+RAG+VIP+V +++ R DA Sbjct: 355 VTVTNATLHNEDEIRR-----------KDVRIGDTVIVRRAGDVIPEVARVVLERRPSDA 403 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + FS P CP+C S VVR+ + AA RCTGGL C AQ+ + L HF R A NI+G Sbjct: 404 RVFSMPQACPVCGSHVVREED------AAAWRCTGGLFCPAQRKQALLHFAGRRAMNIDG 457 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG + ++ ++ + PAD++ L + + ++ G+ S NL D+I Sbjct: 458 LGDKLVEQLVDAQQ----VSTPADLYKL------GMSGLVSLERMGEKSALNLLDAIEAS 507 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R +L RF+F+LGIR+VG AR LA+++ + Q D L +V VG Sbjct: 508 RKTTLARFLFALGIRNVGETTARDLAQHFGALDAIMQA----------DAERLQQVRDVG 557 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRH 664 ++AQ++V+F+ N+ + L + I K V TGTL + R Sbjct: 558 PVVAQSMVDFFAEAHNLAVIAQLREAGVHWDEHSPAPQEDRIYTGKTFVLTGTLASLSRQ 617 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A+E + LGA VS +S+KTD ++ G + GSKLE+A +LGV +++E +FL L++ Sbjct: 618 QAKERLEALGAKVSGSVSKKTDFVVAGSDSGSKLERAMELGVAVLSESEFLLLIE 672 >gi|163856016|ref|YP_001630314.1| DNA ligase [Bordetella petrii DSM 12804] gi|254781264|sp|A9II69|DNLJ_BORPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|163259744|emb|CAP42045.1| DNA ligase [Bordetella petrii] Length = 697 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 254/730 (34%), Positives = 385/730 (52%), Gaps = 68/730 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 QA + +++L EI H+ YY + P + D+EYDAL R + P+L P P Sbjct: 7 QAAQRVAALRNEIEQHNVRYYVHDDPSVSDAEYDALMRELIQLETDHPELV---TPESPT 63 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----DNSIFFTLE 131 ++G + V H++P LSL ++ ++++ F R+ + D + E Sbjct: 64 QRVGAAPLAAFGSVRHAVPMLSLGNAFDPDEVQAFDRRVGDTLRGAGLLRVDQQPEYFCE 123 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG I++RYE G V AA RGDG +GEDV+A +R I +P L P ++EVRGEV Sbjct: 124 LKLDGLAISLRYEDGVLVQAATRGDGQTGEDVTANVRTIRAVPLRLKGAAPRVLEVRGEV 183 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS--- 247 +++ +F LN A K + NPRNAA+G LR+L+P R L FF + G+ Sbjct: 184 LMNRAEFDRLNRSQAARDEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHGLP 243 Query: 248 ------------------EIFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEM 288 + ML + LG P R+A G++++Y ++ Sbjct: 244 GRQTALFDEPAPGAREESTLPRDTHGAMLDWLAELGLPVNTRHNRRAVGAEGLLAFYEQV 303 Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348 R LPYDIDG+VYKV+ QK LG AR+PR+ ++HKF ++A+TRLLDI++Q+GR Sbjct: 304 GRERPGLPYDIDGVVYKVNSLPAQKVLGFVARAPRFALAHKFPAEEATTRLLDIEVQVGR 363 Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408 TG +TPVARL+PV +GG +TNATLHNED ++ +D+R+GD V V+RAG+ Sbjct: 364 TGAITPVARLQPVFVGGVTVTNATLHNEDEVRR-----------KDVRIGDTVTVRRAGD 412 Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 VIP+VV + +R DA+ F P CP+C S + R + A RCTGGL C+AQ+ Sbjct: 413 VIPEVVGPVPGKRPADAREFVMPVSCPVCGSAIERPEDE------AIARCTGGLFCAAQR 466 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 + L H R A +I+GLG++ +D S ++ AD+++L ++ + Sbjct: 467 KQTLLHAAGRKALDIDGLGEKLIDQLVDS----GRVKSLADLYSLNA------FELAALE 516 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 G S NL +I++ R SL R +F+LGIRHVG AR +A+++ S + Sbjct: 517 RMGKKSADNLVAAIDRARTPSLGRLLFALGIRHVGETTARDVARHFGSIETIMDA----- 571 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648 D +L P VG ++A +I F+ P N ++ LLK + + Sbjct: 572 -----DEEALAGAPDVGPVVAGSIRRFFAEPHNREIID-LLKAQGVHPVPEAGPQGNTLA 625 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K V TGT+ R +A ++ G VS +S+KT ++ G+ GSKL KAQ+LGV + Sbjct: 626 GKTFVLTGTMPNWTRDEATRHILAAGGKVSGSVSKKTAYVVAGEEAGSKLAKAQELGVTV 685 Query: 709 MNEEQFLFLL 718 ++E+ LL Sbjct: 686 LDEDGLKALL 695 >gi|289522353|ref|ZP_06439207.1| DNA ligase, NAD-dependent [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504189|gb|EFD25353.1| DNA ligase, NAD-dependent [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 674 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 258/709 (36%), Positives = 393/709 (55%), Gaps = 46/709 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A+K L +EI H+ YY P+I D EYDAL R + FP++ P+ P Sbjct: 7 EAKKRAEELRKEIEKHNYYYYVLDSPVITDEEYDALYRGLVELERRFPEII---TPDSPT 63 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG+ KV H IP LS++ ++ E+L+ F++R+YR ++ + FT E K+D Sbjct: 64 QRVGGKPKEEFRKVVHEIPMLSMDNVFTQEELQSFVSRVYRILER----EVDFTTELKVD 119 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +++ YE G+FV A RGDG GEDV+ +R I ++P L +P +EVRGEVY++K Sbjct: 120 GIAVSLVYEDGRFVLGATRGDGRVGEDVTENLRTIKSLPLRLMEPLPGRLEVRGEVYMTK 179 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF +LN G +ANPRNAA+G LR+L+P R L FV+ + E Q Sbjct: 180 EDFASLNRSREEDGEPLFANPRNAAAGSLRQLDPNVTAQRRLRIFVYQVVHPEEYGLFSQ 239 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +++L +R GFP R F + +Y E K R +L Y DG+V KVD+ + +Q Sbjct: 240 FQVLSWLRNKGFPTQGNERLCKNFEELWNYIEEWKEKRHSLAYATDGVVVKVDDLTAYEQ 299 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A++PRW I+ K+ ++ TRLL I++ +GRTG LTPVA LEPV + G ++ A+LH Sbjct: 300 LGTTAKAPRWQIAFKYPAEEQRTRLLRIEVSVGRTGALTPVAILEPVRLAGTVVQRASLH 359 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED IK L D+RVGD V V++AGE+IP+VV + + R +PF+ P C Sbjct: 360 NEDEIKRL-----------DVRVGDYVYVRKAGEIIPEVVRVDYSARTGQERPFAIPENC 408 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C + VVR + + +C AQ E +KHF SRDA +I+GLG++ ++ Sbjct: 409 PVCGATVVRLVGEVAYR-------CPNKSCPAQIKESIKHFASRDAMDIKGLGEKIIEQL 461 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + AD++ L++ S + G S L ++IN +N L R I Sbjct: 462 VDKKMIGGF----ADLYKLKKEDLIS------LDRMGPKSAEKLINAINSSKNRPLSRLI 511 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LGIR+VG+ A LA+ + S N A+ D L +P +G IA +IV Sbjct: 512 YALGIRYVGSRTAEILAERFKSMDNLAKA----------DIQDLSDIPGIGPQIASSIVA 561 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F+++ +N+ ++ L + + E K+VFTG L+K R++A+ V LG Sbjct: 562 FFRDEKNLATIKDLARCGIKMAEEESERQEGPWEGWKIVFTGELEKATRNEAENIVKYLG 621 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 A+ S+ +SR +++G NPGSKL KAQ+LGVKI++E+ F L+ + + Sbjct: 622 AIPSSSVSRNVAFVVIGRNPGSKLAKAQELGVKIVDEQTFWKLVDEAKS 670 >gi|85859410|ref|YP_461612.1| NAD-dependent DNA ligase [Syntrophus aciditrophicus SB] gi|123738818|sp|Q2LTN8|DNLJ_SYNAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|85722501|gb|ABC77444.1| NAD-dependent DNA ligase [Syntrophus aciditrophicus SB] Length = 672 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 260/711 (36%), Positives = 385/711 (54%), Gaps = 49/711 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E ARK + L+ I YH+ YYQ P I D+EYD+L + A+ FP Sbjct: 2 MDAESARKNIEDLKARIEYHNRRYYQLDDPEISDAEYDSLLQELIALEKQFPQWL---TE 58 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +IG H P LSL ++ E++ +F R+ RF + + F +E Sbjct: 59 DSPSRRIGAAPLSKFAPAVHLSPMLSLANAFSEEEILEFDRRLKRFLDSSER--LSFVVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI----IEV 187 PKIDG + + Y G A RGDG GEDV+ IR + TIP + E IE+ Sbjct: 117 PKIDGVAVNLIYSSGVLTTGATRGDGAKGEDVTQNIRTLHTIPLKIQNGSDERLPEQIEI 176 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGE+Y+ F LN+ +A G P+ANPRNAA+G LR+L+ + R L F + +G Sbjct: 177 RGEIYMETAAFRKLNERRLAAGEPPFANPRNAAAGSLRQLDASITARRPLKMFCYAVGIV 236 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 +++L ++ GF VN +RQ + +Y E++ +R+ LPY+IDG+V KV Sbjct: 237 RGRAFTYHHDVLHALKKWGFSVNPFIRQVEGIEKCIEFYRELQDLRNELPYEIDGMVIKV 296 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ SLQ +LG +RSPRW ++ KFA QA+T + DI + +GRTG LTPVA + PV +GG Sbjct: 297 DDLSLQTRLGAVSRSPRWAVACKFAATQATTVIRDIIVNVGRTGTLTPVALMTPVKVGGV 356 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ ATLHN+D I +DIR+GD VLV+RAG+VIP+VV +IV+ R Sbjct: 357 TVSRATLHNQDEIDK-----------KDIRIGDTVLVQRAGDVIPEVVKVIVSNRSGREI 405 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 PF P CP C S VVR AAHRC G L+C AQ ++HFVSR +IEGL Sbjct: 406 PFKIPDTCPECGSEVVRLAGE------AAHRCIG-LSCPAQLRRHIQHFVSRGGMDIEGL 458 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + + + I PAD++ L S + N+ + SV+NL +I + Sbjct: 459 GDKLVSQLVNQK----LIHDPADLYYL------SHDALLNLERMAEKSVSNLLSAIELSK 508 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + SL++ IF+LGIRHVG I++ LA+ + + N L+ + +G Sbjct: 509 HPSLDKIIFALGIRHVGEHISKILARRFRTLDALINTTEN----------ELLAIRDIGP 558 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++ +I+EF++N N +E L K S S+ + K VFTG L ++ R +A Sbjct: 559 EVSSSILEFFRNASNRRVIEKLKKAGV-SPLETISPRSAPLTGKTFVFTGALSRMTRDEA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 ++ V LG + +++KTD ++ G+ GSKL+KAQ+ G+ I++EE+FL L Sbjct: 618 KQIVESLGGQAAGTVTKKTDYVVAGEAAGSKLQKAQKAGIAILSEEEFLRL 668 >gi|332284990|ref|YP_004416901.1| DNA ligase [Pusillimonas sp. T7-7] gi|330428943|gb|AEC20277.1| DNA ligase [Pusillimonas sp. T7-7] Length = 698 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 255/725 (35%), Positives = 388/725 (53%), Gaps = 63/725 (8%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + +L EI+ H+ YY P++ D+ YD L + P+L P P Sbjct: 11 AAQRAETLRAEINEHNHRYYVQDAPVVSDAAYDKLMTELIELEQTHPELI---TPESPTQ 67 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----DNSIFFTLEP 132 ++G E S V H++P SL ++ ED+ F R++ + + + E Sbjct: 68 RVGAEPLPSFDSVRHAVPMRSLGNAFDAEDIHAFSKRVFDTLHGAGMAGAEEKVQYVAEL 127 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K DG +++RYE+G+ V AA RGDG +GED+++ IR + ++P L + P+++EVRGEV Sbjct: 128 KFDGLAVSLRYEEGRLVRAATRGDGQTGEDITSNIRTLRSVPLKLKGDYPQVLEVRGEVL 187 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 +++ DF LN A G K + NPRNAA+G LR+L+P R L F+ +G G+ + Sbjct: 188 MNRQDFEKLNQAQQARGEKVFVNPRNAAAGSLRQLDPRITAKRPLRFYAYGWGEIRIVHD 247 Query: 252 KG-----------------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 +ML ++ LG PVN+ + G++ +Y + S R+ Sbjct: 248 GQTELFRQESGSAEMPRKTHAQMLDWLQALGLPVNDSRKLVCGAQGLLDFYEHIGSTRTA 307 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 LP+DIDG+VYKVD Q+ LG AR+PR+ I+HKF ++ +TRLL I++Q+GRTG +TP Sbjct: 308 LPFDIDGVVYKVDSLEAQEVLGYVARAPRFAIAHKFPAQEETTRLLSIEVQVGRTGAITP 367 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VARLEPV +GG +TNATLHNED I+ +D+RVGD V+V+RAG+VIP+V+ Sbjct: 368 VARLEPVFVGGVTVTNATLHNEDEIRR-----------KDVRVGDTVVVRRAGDVIPEVL 416 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 +++ R PD F P CP+C S + R + A RCTGGL C+AQ+ + L H Sbjct: 417 APVLDLRPPDTSLFVMPRQCPVCGSAIERPEDE------AVSRCTGGLFCAAQRKQSLSH 470 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 R A +IEGLG++ +D S ++ AD+FTL + + G S Sbjct: 471 AAGRKALDIEGLGEKLVDQLVDS----GRVKSLADLFTLTSDELAAY------ERMGRKS 520 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 NL ++ K R SLER +++LGIRHVG AR LA+++ S D Sbjct: 521 ADNLVAALEKARTPSLERLLYALGIRHVGEATARDLARHFGSVDAVMAA----------D 570 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLV 653 +L++V VG ++A +I+ F+ P N + L + + + S + K LV Sbjct: 571 ETALLQVHDVGQVVAASILNFFAEPHNRDVIAQLAAAGVHASAPEQASGSDLRLAGKTLV 630 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 TGT+ R +A + G VS +S+KT ++ G+ GSKL KA +LGV +++E+ Sbjct: 631 LTGTMPNWTRDEATRRILAAGGKVSGSVSKKTAYVVAGEEAGSKLTKAAELGVPVLDEDG 690 Query: 714 FLFLL 718 LL Sbjct: 691 LKALL 695 >gi|222055066|ref|YP_002537428.1| DNA ligase, NAD-dependent [Geobacter sp. FRC-32] gi|254781339|sp|B9M861|DNLJ_GEOSF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|221564355|gb|ACM20327.1| DNA ligase, NAD-dependent [Geobacter sp. FRC-32] Length = 669 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 245/710 (34%), Positives = 378/710 (53%), Gaps = 44/710 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + A+ + L +EI+ H+ YY +P I D+EYD L R + FPDL + Sbjct: 1 MDRTAAQLRIQELHREINRHNYLYYVEDRPEITDAEYDLLLRELQQLEKEFPDLVTA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G +V+H +P LSLE +N ++R F RI R+ I + E Sbjct: 58 DSPTQRVGAAPLDKFNQVSHRLPMLSLENAFNEGEMRDFDERIKRYLGLPMAKEIEYVCE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PK+DG + + YE+G + + RGDG+ GEDV+ ++ + +IP R+ P ++EVRGE Sbjct: 118 PKMDGLAVELIYEEGSLTFGSTRGDGYVGEDVTQNLKTVKSIPLRLHCSPPPSLVEVRGE 177 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VY+ F LN + G P+ANPRNAA+G LR+L+P R L+ F + G Sbjct: 178 VYLGLAPFQKLNMDREEAGLPPFANPRNAAAGSLRQLDPRITARRPLSIFCYAPGLVEGY 237 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q +ML + G PVN +++ +++YY E+ R +LPY+IDG+V KVD F Sbjct: 238 EFTSQSQMLATLPQWGLPVNPLIKKVAGIDAVLAYYREIGETRESLPYEIDGVVIKVDSF 297 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ+ LGE+ RSPRW I+ KF +QA T + DI Q+GRTG++TPVA L+PV + G +++ Sbjct: 298 DLQRDLGEKTRSPRWAIAWKFPPRQAVTVVEDIVPQVGRTGVITPVAHLKPVEVSGVMVS 357 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN + ++ +DIR GD V+V+RAG+VIP VV ++ +R A+ + Sbjct: 358 RATLHNWEEMEK-----------KDIRKGDTVVVERAGDVIPAVVKVMTEKRLEGAELLA 406 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C S +V+ + GL C AQ E + HF SR A +IEG+G + Sbjct: 407 VPAACPECGSEIVKIPGEVAIR-------CLGLTCPAQIRETIIHFASRHAMDIEGMGDK 459 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ + E ++ AD++ L ++ GD NL ++I ++ Sbjct: 460 YVEQLLRLE----LVKTVADLYYLTKKDFMRF------ERMGDKLAENLLNAIEASKHRE 509 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RFIF+LGIRHVG A+ LA + S ++ + L+ + VG +A Sbjct: 510 LSRFIFALGIRHVGEHTAKLLASAFGSVEHLEKATE----------EELLSIREVGPQVA 559 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 Q++ F++NP N +E + EK + K VFTG L + R A+ Sbjct: 560 QSVRTFFRNPANREVIERMFAAGVR-PAVEEKRLGGRFTGKTFVFTGALTRFTRDDAKNM 618 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V G + +S+KTD ++ G GSKL+KA+QLGV ++ E++FL +L+ Sbjct: 619 VENEGGHAAGSVSKKTDYVVAGAEAGSKLDKARQLGVNVLTEDEFLKMLE 668 >gi|300311482|ref|YP_003775574.1| NAD-dependent DNA ligase [Herbaspirillum seropedicae SmR1] gi|300074267|gb|ADJ63666.1| NAD-dependent DNA ligase (contains BRCT domain type II) protein [Herbaspirillum seropedicae SmR1] Length = 688 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 245/706 (34%), Positives = 379/706 (53%), Gaps = 47/706 (6%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 +L +++ H+ YY +P I D+EYD L + A+ A P+L P+ P ++G Sbjct: 21 RAFALRADLNRHNYSYYVLDQPSIPDAEYDRLFQELQALETAHPELL---TPDSPTQRVG 77 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 V H IP LSL ++ +D+ F R+ + + + E K DG I Sbjct: 78 AGPLPQFEPVRHDIPMLSLGNGFSDDDIEAFDKRVRDGLETL--QEVRYATELKFDGLAI 135 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDF 198 ++RYE G V AA RGDG +GE+V+A IR + IP L IP++++VRGEV + K+DF Sbjct: 136 SLRYENGVLVQAATRGDGTTGENVTANIRTVRAIPLRLHGEAIPQLLDVRGEVLMYKDDF 195 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE-IFAKGQYE 256 LN G+K +ANPRNAA+G LR+L+ R L FF +G+G Sbjct: 196 ARLNQRQRDAGQKEFANPRNAAAGSLRQLDSRITAQRTLRFFAYGIGVLEGADMPSSHSA 255 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L + LG PV G++ ++ + + R +LPY+IDG+VYKVD QKQLG Sbjct: 256 LLDWYQQLGLPVCKERAVVTGATGLLEFFRGIGAKRESLPYEIDGVVYKVDRLDQQKQLG 315 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +R+PR+ ++HKF ++A T + DI++Q+GRTG +TPVARL PV +GG +TNATLHNE Sbjct: 316 FVSRAPRFALAHKFPAQEALTVVQDIEVQVGRTGAITPVARLNPVFVGGVTVTNATLHNE 375 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D ++ +DI++GD V+V+RAG+VIP+VV + +R DA+ F P+ CP+ Sbjct: 376 DEVRR-----------KDIQIGDTVIVRRAGDVIPEVVAYVPEKRPADARAFVMPAACPV 424 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S +VR + A RC+G L CSAQ+ L+HF SR A +IEGLG+Q ++ Sbjct: 425 CGSPIVRAEDE------AVARCSGGWLKCSAQRKGGLQHFASRRAMDIEGLGEQLVEQLV 478 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + + PAD++ L + + + + S N+ D++ K ++ +L RFI+ Sbjct: 479 DRK----VVNTPADLYRL------GLSALAELDRMAEKSAQNVLDALQKSKSTTLARFIY 528 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIRHVG A+ LA+++ L+ V VG ++A +I F Sbjct: 529 ALGIRHVGEATAKELARHFGGLDKILAASEA----------QLLEVADVGPVVATSIRSF 578 Query: 616 YQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + + N+ VE L + + + K V TGTL + R +A + + G Sbjct: 579 FDDALNVELVEQLRAVGVHWPESAGVEAAAKHLAGKTFVLTGTLPNLSRDEASQLIEAAG 638 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 V+ +S+KT ++ G GSKL KA++LG+ I++E+ L + Sbjct: 639 GKVTGSVSKKTTYVVAGAEAGSKLAKAEELGIAILDEDGLKALCAE 684 >gi|299535244|ref|ZP_07048568.1| DNA ligase [Lysinibacillus fusiformis ZC1] gi|298729365|gb|EFI69916.1| DNA ligase [Lysinibacillus fusiformis ZC1] Length = 667 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 238/712 (33%), Positives = 375/712 (52%), Gaps = 53/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + + ++ L + + + YY KP++ DS YD L + A+ A P L P+ Sbjct: 1 MNEIEQRIAELNKLLHEYGYAYYVLDKPVVADSVYDQLLQELIALEEANPSLIY---PDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + KVTH P LSL +N DLR+F ++ + + + E K Sbjct: 58 PTQRVGGAVVEGFKKVTHDYPMLSLSNAFNEADLREFDRKVRQAIG----DQFSYVCELK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I+++YE G FV A RGDG GED++A ++ I IP L I IEVRGE Y+ Sbjct: 114 IDGLAISLKYENGMFVQGATRGDGVVGEDITANLKTIRAIPLRLKEPI--TIEVRGEAYM 171 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFA 251 K F LN + G + +ANPRNAA+G LR+L+P + F G Sbjct: 172 PKKSFENLNAQRADNGEELFANPRNAAAGSLRQLDPKIAASRQLSTFIYAIGGDGEVYGI 231 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 G EML + LGFP N ++ +T ++++ R L Y+IDG+V KVD ++ Sbjct: 232 DGHAEMLDYLEGLGFPSNKERQRCSTIEEVMAFIEHWTENRPKLAYEIDGIVIKVDRYAQ 291 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG A+SPRW I++KF ++ T LLDID+ +GRTG++TP A L PV + G + A Sbjct: 292 QDELGYTAKSPRWAIAYKFPAEEVVTTLLDIDLTVGRTGVVTPTAILTPVQVAGTTVQRA 351 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHNED I+ +DIR+GD V++++AG++IP+VV +++ +R D+ PF P Sbjct: 352 SLHNEDLIR-----------DKDIRLGDTVIIRKAGDIIPQVVGVLIEQRPEDSVPFVMP 400 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C S ++R A RC AC AQ E +K+FVSR+A NI+GLG + + Sbjct: 401 KNCPVCDSELIRIEGE------VALRCVNP-ACFAQIAESIKYFVSRNAMNIDGLGDKVV 453 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + + A I +D++ L Q + G+ S TNL ++I + S+E Sbjct: 454 EQLLR----ADLIHDVSDLYHLTVEQLV------ELERMGEKSATNLVNAIQASKENSME 503 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R + LGIRHVG + A+ +++ + S + L+ + +GD +A + Sbjct: 504 RLLIGLGIRHVGEKAAKIVSEEFGSMEAVMAATE----------EQLVAIYEIGDKMASS 553 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +VE++ N +E L + S K +V TG L+++ R++A+ Sbjct: 554 LVEYFSNEDARAVIERLADAGVNMTYKGKKVEVAIGDSPFAGKTIVLTGKLEQLTRNEAK 613 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + +LG V+ +S+KTD++I G + GSKL KA+QLG+++ E+ + L Sbjct: 614 AKIEELGGTVTGSVSKKTDLVIAGADAGSKLTKAEQLGIEVWTEDNLIEQLN 665 >gi|222099565|ref|YP_002534133.1| DNA ligase [Thermotoga neapolitana DSM 4359] gi|254781438|sp|B9K734|DNLJ_THENN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|221571955|gb|ACM22767.1| DNA ligase [Thermotoga neapolitana DSM 4359] Length = 693 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 254/707 (35%), Positives = 388/707 (54%), Gaps = 47/707 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ +E+ L +EI YH+ YY + P+I D EYD L RR + +P+L P+ Sbjct: 12 PKEVIEEVERLREEIEYHNYRYYVLNDPVITDEEYDRLMRRLIELERMYPELV---TPDS 68 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG++ V HS+P LSL+ +N E++ +F R+ + Q+ + + + E K Sbjct: 69 PTQRVGGKVLEGFKTVKHSVPMLSLDNTYNEEEIIEFDKRVKKTLQE---SEVEYVAELK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I +RYE G+FV A RGDG GEDVS ++ I ++P L L P IEVRGE+Y+ Sbjct: 126 IDGVSIALRYENGRFVLGATRGDGVEGEDVSENVKTIRSVP--LRLRKPLTIEVRGEIYM 183 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 ++F LN+E G P+ANPRNAA+G LR+LN +R L+ F++ + K Sbjct: 184 PVDEFKRLNEEREEEGLPPFANPRNAAAGTLRQLNTALVASRRLDSFIYYVVHPENYGLK 243 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q+E LQ ++ +GF VN R ++ Y+ E K + L Y +DG+V KV+ F Q Sbjct: 244 TQWEALQFLKEIGFKVNPHSRLCKNIQEVIEYWREWKERKRELDYWVDGVVVKVNRFDFQ 303 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 K LGE +++PRW I+ KF +QA TR+LD+ IQ+GRTG+LTPVA LEPV + G ++ A+ Sbjct: 304 KVLGETSKAPRWAIAFKFPAEQARTRILDVTIQVGRTGVLTPVAELEPVQLAGTIVKRAS 363 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN +YI+ +DIR+GD V V++AG +IP++V I R + P Sbjct: 364 LHNFEYIR-----------EKDIRIGDYVFVEKAGGIIPQIVKSIPELRTGSEKEIKPPQ 412 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C +V K A RC C A+ L+ FVSR+A +IEGLG++ +D Sbjct: 413 SCPVCGGKVG-----KLSPDEVAIRCLNP-HCPAKLKRALRTFVSREALDIEGLGEKIID 466 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 S ++ ADIF L + G G ++ + I + + L + Sbjct: 467 RLVDS----GLVKDIADIFYLTPFDL-----AQLGPGIGQRTIAKILQEIEEAKKRPLHK 517 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 I LGI VG + A+ LA+++ S + A+ + +L +P +G IA++I Sbjct: 518 LITGLGIPMVGQKTAKILAEHFKSLEAIAEA----------SYETLKDIPGIGPEIARSI 567 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 VE+++NP+ +E L K + K ++ TGTL+ R + E++ + Sbjct: 568 VEYFRNPKTREIIEKLKKAGVKLEEKTVKY--DVLKGLTFAVTGTLKNFTREEIIEFLER 625 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA V +S+ TD +IVG+NPGSK EKA+ L VK M+EE+FL ++ Sbjct: 626 LGARVVNSVSKNTDYLIVGENPGSKYEKAKALKVKTMSEEEFLRFVE 672 >gi|218289368|ref|ZP_03493602.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius LAA1] gi|218240474|gb|EED07655.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius LAA1] Length = 684 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 241/722 (33%), Positives = 369/722 (51%), Gaps = 56/722 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 ALS+E+AR L ++I YH+ YY P I D+E+DAL R + +P+L Sbjct: 8 SALSLEEARARAKVLREQIEYHNRKYYLEDNPEISDAEWDALMRDLIELERKYPELV--- 64 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 DP P ++G KV H +P LSL ++ EDL + R+ + + + + Sbjct: 65 DPASPTQRVGAPALEGFAKVVHEVPMLSLSNAYSTEDLLDWDRRVRQAVG----DDVRYV 120 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E K+DG + +RY+ G+ V A RGDG GED++A IR I +P LS + +EVRG Sbjct: 121 CELKVDGLAVALRYQDGRLVLGATRGDGSVGEDITANIRTIRNVPLELSEPVS--LEVRG 178 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248 E Y+ K +F+ LN+ G +ANPRNAA+G LR+L+P +R L V+ L + Sbjct: 179 EAYMPKREFMRLNELREQQGEPLFANPRNAAAGSLRQLDPAVAASRRLGVIVYQLVRAEA 238 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + L + LG P + +++Y R LPY DG+V KVD Sbjct: 239 HGCETHSQALDYVARLGLPAHRERHVCANIEDVIAYIEAWADKRHELPYATDGMVVKVDS 298 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ +LG A+SPRW I++K+A +QA T L I++ +GRTG++TP A +PV + G + Sbjct: 299 LALQSRLGATAKSPRWAIAYKYAAEQAETTLRAIELNVGRTGVVTPTAVFDPVQLAGTTV 358 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHNED ++ +DIRVGD ++V++AG++IP+V+ + R F Sbjct: 359 SRASLHNEDLVR-----------EKDIRVGDVIVVQKAGDIIPEVIRSLPERRTEPLPEF 407 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C SR+VR A RC C A E L HF SRDA NIEGLG+ Sbjct: 408 RMPETCPQCGSRLVRLDGE------VAWRCINP-DCPALLREGLIHFCSRDAMNIEGLGE 460 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 Q + +R AD++ L++ + GD L +I + + Sbjct: 461 QWITVLLDR----GLVRTHADLYRLRKSDLI------QLDRMGDKLADKLLHNIQESKRN 510 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SLER +F LGIRHVG + A++LA+++ + L+ VP +G + Sbjct: 511 SLERLLFGLGIRHVGEKAAKTLAEHFGTIDALMSASE----------EELMAVPDIGPKV 560 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 AQ+I +++ PR ++ L +K + K +V TG LQ R +A Sbjct: 561 AQSIRQYFDTPRVRQLIQELKDLGVNMTYLGPQKVSDGPLAGKTVVLTGVLQAADRKQAT 620 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-------GVKIMNEEQFLFLLQQ 720 E++ ++G V++ +S KTD++I GD GSKL KAQ++ ++I +E FL L+ + Sbjct: 621 EWIERMGGKVASSVSAKTDVLIAGDKAGSKLAKAQEILRNHPDAKLEIWDEAAFLRLVDE 680 Query: 721 YN 722 Sbjct: 681 AG 682 >gi|315127017|ref|YP_004069020.1| NAD-dependent DNA ligase [Pseudoalteromonas sp. SM9913] gi|315015531|gb|ADT68869.1| NAD-dependent DNA ligase [Pseudoalteromonas sp. SM9913] Length = 673 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 243/715 (33%), Positives = 384/715 (53%), Gaps = 47/715 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ ++++ L + H+ YY P I D+EYD L R + P+ + Sbjct: 1 MT-SSISEQINHLRTTLEQHNYSYYVLDTPSIPDAEYDRLLRTLSELETQHPEFLTA--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+GG +V H +P LSL+ + ++ F RI + + F E Sbjct: 57 DSPTQKVGGAALAKFEQVAHQVPMLSLDNAFGEDEFSGFNRRIKERLMSTE--ELTFCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGE 190 PK+DG ++I Y G V AA RGDG +GE+++ ++ I +P L + +EVRGE Sbjct: 115 PKLDGLAVSIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDDYPRELEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V++ F LN E G K + NPRNAA+G LR+L+ R L F+ + G ++ Sbjct: 175 VFMDSAGFEKLNAEAEKRGDKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADG 234 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + Y+ L K+ G P+ + ++YYN++ + RS L Y+IDG+V KV++ Sbjct: 235 TLPEDHYQQLAKLTDWGLPLCPETKLVEGPKAALAYYNDILTRRSELKYEIDGVVIKVNK 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ++LG AR+PRW I++KF ++ T+LLD++ Q+GRTG +TPVARLEPV +GG + Sbjct: 295 KALQERLGFVARAPRWAIAYKFPAQEEITQLLDVEFQVGRTGAITPVARLEPVFVGGVTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I L ++VGD V+++RAG+VIP++ +++ +R DA+ Sbjct: 355 SNATLHNADEIARL-----------GVKVGDTVIIRRAGDVIPQITQVVLEQRPSDAKEI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CPIC S + R A RCTGGL C AQ+ + +KHF SR A +I+GLG Sbjct: 404 VFPTMCPICDSHIERVEGE------AVARCTGGLVCQAQRKQAIKHFASRKALDIDGLGD 457 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + +D E I+ PAD+F L++ E++ G S NL +++ + Sbjct: 458 KIVDQLVDRE----LIKTPADLFILKQ------GHFESLERMGPKSAKNLVAALDDAKTT 507 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L +F++SLGIR VG A++LA ++L+ +N LI V VG+I+ Sbjct: 508 TLAKFLYSLGIREVGEATAQNLANHFLTLENVIDA----------SIEQLIEVSDVGEIV 557 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 A+ + F+ N+ V L+ + + V TGTL + R+ A+ Sbjct: 558 AKHVRGFFTEEHNLTVVNELIAQGINWPQLTAPSEQEQPLAGLTYVLTGTLNTLNRNDAK 617 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + QLGA VS +S KTD ++ G+ GSKL KAQ+LG++I+ E+ + LL+ +N Sbjct: 618 ARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQELGIEILTEDDLITLLETHN 672 >gi|125973550|ref|YP_001037460.1| DNA ligase, NAD-dependent [Clostridium thermocellum ATCC 27405] gi|256003369|ref|ZP_05428360.1| DNA ligase, NAD-dependent [Clostridium thermocellum DSM 2360] gi|281417755|ref|ZP_06248775.1| DNA ligase, NAD-dependent [Clostridium thermocellum JW20] gi|166215580|sp|A3DE88|DNLJ_CLOTH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|125713775|gb|ABN52267.1| DNA ligase, NAD-dependent [Clostridium thermocellum ATCC 27405] gi|255992659|gb|EEU02750.1| DNA ligase, NAD-dependent [Clostridium thermocellum DSM 2360] gi|281409157|gb|EFB39415.1| DNA ligase, NAD-dependent [Clostridium thermocellum JW20] gi|316940208|gb|ADU74242.1| DNA ligase, NAD-dependent [Clostridium thermocellum DSM 1313] Length = 663 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 234/706 (33%), Positives = 382/706 (54%), Gaps = 46/706 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 K + L + ++YH YY P I D EYD L R + + PDL P+ P Sbjct: 2 DIEKRILELREILNYHSHKYYVEDAPEISDFEYDELYRELEKLEQERPDLI---TPDSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +IGG+ KV H++ SL +++ E+L F R+ + + + +E KID Sbjct: 59 QRIGGKPLEGFKKVVHAVQMQSLSDVFSREELLAFDRRVREAVG----DDVEYVVEKKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +++ YE G F A RGDG GEDV+ ++ I TIP L ++EVRGEV+ISK Sbjct: 115 GLSVSLVYENGVFTRGATRGDGLVGEDVTQNLKTIRTIPLRL-KRDLPLLEVRGEVFISK 173 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254 DF+ +N+E A G++ +ANPRNAA+G LR+L+P R L+ FV + + K Sbjct: 174 KDFIKINEEQEAAGQQLFANPRNAAAGSLRQLDPKVTSQRKLDIFVFNIQRIEGQSFKTH 233 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L+ ++ LGF + G + + + N + R + ++IDG V KV+ ++ Sbjct: 234 SETLEFLKELGFKTSPGYKVCKDINAVWEEINRIGEERGEIDFEIDGAVVKVNSLEQREI 293 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++PRW +++K+ + T + I + +GRTG+LTP+A +PV + G+ ++ ATLH Sbjct: 294 LGSTIKAPRWAVAYKYPAEVKETVVKKITVNVGRTGVLTPIAIFDPVRLAGSTVSRATLH 353 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N DYIK +DIR+GD V +++AG++IP+VVD++ +R + F+ P C Sbjct: 354 NMDYIK-----------EKDIRIGDTVRIRKAGDIIPEVVDVVFEKRSGNEAEFNMPEQC 402 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C + VVR+ AA+RCTG + CSAQ ++ HF SRDA NIEGLG ++ Sbjct: 403 PVCGADVVREEGE------AAYRCTG-IECSAQLYRKIVHFASRDAMNIEGLGPAIIEVL 455 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + I+ AD++ L + ++ + NI G SV NL SI K + +++R I Sbjct: 456 LEK----GLIKEIADLYYLHKEKE----TLVNIERMGKKSVENLLASIEKSKQNNIDRLI 507 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F GIRH+G A+ L++ + S ++ +P G+ +A+++ + Sbjct: 508 FGFGIRHIGLRAAQLLSENFESLDALMNA----------SAEDIMAIPEFGEKMAKSVEQ 557 Query: 615 FYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F++ +N VE L ++ +K + E K V TGTL R +A+E + Sbjct: 558 FFRQKQNRDTVEKLKAAGVNTVSFGKKKIKDNRFEGKTFVLTGTLPSFTRKEAEEIIKSF 617 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G S +S+KTD ++ G++ GSKL+KA++LG++I++E++F +++ Sbjct: 618 GGKTSGSVSKKTDYVLAGEDAGSKLQKAKELGIEIIDEDKFRKMIE 663 >gi|296046583|gb|ADG86433.1| NAD-dependent DNA ligase [Francisella novicida] Length = 673 Score = 558 bits (1438), Expect = e-156, Method: Composition-based stats. Identities = 243/715 (33%), Positives = 381/715 (53%), Gaps = 47/715 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ ++++ L + H YY P I D+EYD L ++ A+ P+L + Sbjct: 1 MTP-SISEQINHLRSTLEQHSYNYYVLDTPSIPDAEYDRLLQQLSALETQHPELITA--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+GG +V H +P LSL+ ++ ++ F RI + + F E Sbjct: 57 DSPTQKVGGAALSKFEQVAHQVPMLSLDNAFSEDEFIAFNRRIKERLMSTE--ELTFCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190 PK+DG ++I Y G V AA RGDG +GE+V+ ++ I +P L + P +EVRGE Sbjct: 115 PKLDGLAVSIIYRDGVLVQAATRGDGLTGENVTQNVKTIRNVPLKLRGSDYPAELEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SE 248 V++ F N E G K + NPRNAA+G LR+L+ R L F+ + G Sbjct: 175 VFMDNAGFEKFNIEAEKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADG 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 A+ Y+ L+K+ G P+ + ++YY ++ + R L Y+IDG+V K+++ Sbjct: 235 SIAEDHYQQLEKLTDWGLPLCPETKLVEGPQAALAYYTDILTRRGELKYEIDGVVIKINQ 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ++LG AR+PRW I++KF ++ T+LLD++ Q+GRTG +TPVARLEPV +GG + Sbjct: 295 KALQERLGFVARAPRWAIAYKFPAQEEITKLLDVEFQVGRTGAITPVARLEPVFVGGVTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I L ++VGD V+++RAG+VIP++ +++ R DA+ Sbjct: 355 SNATLHNGDEIARL-----------GVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CPIC S V + A RCTGGL C AQ+ + +KHF SR A +I+GLG Sbjct: 404 EFPVTCPICDSHVEKVEGE------AVARCTGGLVCPAQRKQAIKHFASRKALDIDGLGD 457 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + +D E I+ PAD+F L++ E++ G S NL ++ + Sbjct: 458 KIVDQLVDRE----LIKTPADLFILKQ------GHFESLERMGPKSAKNLVTALQDAKAT 507 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L +F++SLGIR G ++LA ++L+ +N SL +V VG+I+ Sbjct: 508 TLAKFLYSLGIREAGEATTQNLANHFLTLENVINA----------SIDSLTQVSDVGEIV 557 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 A + F+ N+ V AL+++ + V TGTL + R+ A+ Sbjct: 558 ATHVRSFFAEQHNLDVVNALVEQGINWPELTPPSAQEQPLAGLVYVLTGTLNTLNRNDAK 617 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + QLGA VS +S KTD ++ G+ GSKL KAQ LG+ ++ EE + LL+Q+N Sbjct: 618 ARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDVLTEEDLINLLEQHN 672 >gi|312882689|ref|ZP_07742426.1| NAD-dependent DNA ligase LigA [Vibrio caribbenthicus ATCC BAA-2122] gi|309369650|gb|EFP97165.1| NAD-dependent DNA ligase LigA [Vibrio caribbenthicus ATCC BAA-2122] Length = 670 Score = 558 bits (1438), Expect = e-156, Method: Composition-based stats. Identities = 247/712 (34%), Positives = 388/712 (54%), Gaps = 48/712 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E +L+ L Q + H YY P I DSEYD L R + P+L Sbjct: 1 MSKE-IETKLNHLRQLLHSHGIKYYVEDNPQIPDSEYDRLMRELLELESQHPELV---SL 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG+ V H IP LSL+ ++ ++L F R+ ++ F E Sbjct: 57 DSPTQRVGGKPLDGFESVQHEIPMLSLDNAFDDQELDAFQKRMQDRLGDENIG--LFCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190 PK+DG +++ YE G + AA RGDG +GE+++ +R I +IP L N P IEVRGE Sbjct: 115 PKLDGLAVSLLYENGVLIQAATRGDGATGENITENVRTIKSIPLQLQGSNWPARIEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE- 248 V++ K F LN + + G K + NPRNAA+G LR+L+ +R L+F+ + +G E Sbjct: 175 VFMPKAGFDKLNQQALKKGEKVFVNPRNAAAGSLRQLDSKITASRPLSFYAYSVGVVEEG 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + YE ++ G P+ Q + + +Y ++ + R L Y+IDG+V KVD Sbjct: 235 ELSSSHYERFIQLTRWGLPMCPETLQVDGLSAVKDFYQDILNRRDDLAYEIDGVVIKVDN 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 ++Q++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+L+PV +GG + Sbjct: 295 VAVQERLGFVARAPRWAIAYKFPAQEEITVLNDVEFQVGRTGAITPVAKLKPVFVGGVTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I+ L + +GD V+++RAG+VIP++V +++ R +P Sbjct: 355 SNATLHNADEIERL-----------GVMIGDEVVIRRAGDVIPQIVSVVLERRSDTTKPI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 +FP CP+C S + R A RCTGG C AQ+ E LKHFVSR A +++GLG+ Sbjct: 404 TFPICCPVCHSEIERLDGE------AVARCTGGFVCQAQRKEALKHFVSRKALDVDGLGE 457 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E + PAD+F L Q + + G S N+ D++ ++ Sbjct: 458 KVIEQLVDRE----LVSTPADLFKLSPHQLS------VLERMGPKSAKNVVDALEHSKST 507 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF++SLGIR VG A +LAK++ + N + +LI V +GDI+ Sbjct: 508 TLSRFLYSLGIREVGEATATNLAKHFKTLANITAAPH----------DALIEVQDIGDIV 557 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKA 666 A+ I F+ +N ++ LL + + N ++ K +V TG+L ++ R A Sbjct: 558 AKHITAFFSQQQNQTVIDDLLSQGIEWSDIEDNHANTPQVLQGKVVVLTGSLSQLNRSDA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +E + LGA V+ +S+KTDI+ G+N GSKL KAQ LG++I E+ + L+ Sbjct: 618 KEALESLGAKVTGSVSKKTDILFAGENAGSKLAKAQDLGIEIRTEQDLVALI 669 >gi|262402686|ref|ZP_06079247.1| DNA ligase [Vibrio sp. RC586] gi|262351468|gb|EEZ00601.1| DNA ligase [Vibrio sp. RC586] Length = 669 Score = 558 bits (1438), Expect = e-156, Method: Composition-based stats. Identities = 246/711 (34%), Positives = 383/711 (53%), Gaps = 47/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + L+ L Q + H YY P I D+EYD L R I P+L P+ Sbjct: 1 MSNVEQRLTELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLEIEAQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG V H IP LSL+ ++ +L F R+ F EPK Sbjct: 58 PSLRVGGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRI--PAVQQSHFCCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192 +DG +++ YE G AA RGDG +GE+++ +R I +IP L + +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGVDFPVRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + K F ALN + G K + NPRNAA+G LR+L+ R L F+ + +G Sbjct: 176 MPKAGFEALNARALQKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGQL 235 Query: 252 KG-QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y+ +++ G P+ + + + S+Y ++ R +L Y+IDG+V KVD+ Sbjct: 236 TTSHYQRFLQLKNWGLPICPETKVVTSLADVKSFYQDILQRRQSLVYEIDGVVIKVDDTQ 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++N Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L + VGD V+V+RAG+VIP++V +++ R DA+P F Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVVRRAGDVIPQIVSVVLERRQADAKPIRF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS + R A RCTGGL C AQ+ E LKHFVSR A ++EGLG + Sbjct: 405 PTCCPVCQSEIERVEGE------AVARCTGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + PAD+F L+ ++ + G S N+ D++NK + +L Sbjct: 459 IEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAKQTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA+++L+ + AQ LI VP VG ++A Sbjct: 509 PRFLYALGIREVGEATALNLAQHFLTLEAIAQA----------SIEQLIEVPDVGGVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 + F+ RN + L++ P + V S + K +V TG+ ++ R+ A+ Sbjct: 559 HLHAFFAQQRNQQVIAELVELGITWPVLAAVPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S+ TDI+ G+ GSKL KA +LG+++++E+ + ++ Sbjct: 619 ALQALGAKVTGSVSKNTDIVFAGEAAGSKLTKAAELGIQVLDEQALIEFVK 669 >gi|307546309|ref|YP_003898788.1| DNA ligase, NAD-dependent [Halomonas elongata DSM 2581] gi|307218333|emb|CBV43603.1| DNA ligase, NAD-dependent [Halomonas elongata DSM 2581] Length = 700 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 238/717 (33%), Positives = 389/717 (54%), Gaps = 46/717 (6%) Query: 8 PIEALSIEQ--ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 + ++ + E + L E+ + YY +P + D++YD RR I +P+L Sbjct: 15 DTDDMTQPDPTIQDEAARLRAELDDANHRYYVLDEPRMTDADYDRKLRRLQEIETEYPEL 74 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R P+ P ++G ++ H++P LSL+ ++ ++L F+ R+ + D S Sbjct: 75 VR---PDSPTQRVGAAPADGFPEIEHAVPMLSLDNAFDEDELAAFVKRVADRL-EIDGES 130 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEI 184 I F EPK+DG +++ YE+G+ RGDG +GE +++ +R + +IP L + P++ Sbjct: 131 IAFCCEPKLDGAAVSLVYERGELTAGVTRGDGRTGEGITSNLRTLKSIPLKLRGRHWPDV 190 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGL 243 +EVRGEV + DF A+ND+ G K +ANPRNAA+G LR+L+P + F + Sbjct: 191 LEVRGEVTMRHADFEAMNDKAREEGGKVFANPRNAAAGSLRQLDPRITDQRPLEFSAYQA 250 Query: 244 GKTSEIFAK-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + ++ ++ GF + +R G++ Y + R L YDIDG+ Sbjct: 251 ARIEPDAGDASHSALMARLSEFGFRTSAELRVVRGTEGVIEYCRALGEKRDALGYDIDGV 310 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KVD+ LQ++LG AR+PRW I+ KF ++ TRL D++ Q+GRTG +TPVARLEPV+ Sbjct: 311 VIKVDDLRLQRELGFVARAPRWAIAFKFPAQEQVTRLNDVEFQVGRTGAITPVARLEPVS 370 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G ++NATLHN D I L + +GD V ++RAG+VIP+VV + +R Sbjct: 371 VAGVTVSNATLHNADEIARL-----------GVMIGDTVAIRRAGDVIPQVVRVQEEDRP 419 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 DA+ FP CP+C S++ R + A RC+GGL C+AQ+ E LKHF SR A + Sbjct: 420 DDAREIVFPERCPVCDSQIERLEDE------AVARCSGGLYCAAQRKEALKHFASRRALD 473 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEGLG++ +D + ++ PAD+F L+ + + + G+ S NL ++ Sbjct: 474 IEGLGEKLIDQLVE----LDWVQTPADLFALEAERLAT------LPRMGEKSSQNLVTAL 523 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 K + +L RFIF+LGIR VG A +LA+++ + + + +L +V Sbjct: 524 EKAKATTLPRFIFALGIREVGEATAANLARHFGTLEALMDA----------ERDALEQVD 573 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 VG I+A + F++ P N + AL + + + +E + V TGT++ + Sbjct: 574 DVGPIVAAHVHTFFRQPHNRDTIAALRQAGVHWEEAEVEIGPTLLEGQSWVLTGTMESMT 633 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R + + + LGA V+ +S+KT ++ G+ GSKL KA+QLGV++++E FL L+ Sbjct: 634 RDEGKARLQALGAKVAGSVSKKTACLVAGEAAGSKLTKAEQLGVEVIDEATFLERLE 690 >gi|82523924|emb|CAI78646.1| NAD-dependent DNA ligase [uncultured delta proteobacterium] Length = 670 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 262/714 (36%), Positives = 394/714 (55%), Gaps = 50/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + A K + L Q I YH+ YYQ P I D+EYD L R + FPD E Sbjct: 2 MDNNSAHKRIIELRQIIEYHNKRYYQQDAPEISDAEYDLLMRELHNLEAQFPD---DELA 58 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G TH P LSL ++ E++ F R+ R ++I + E Sbjct: 59 SSPTQRVGAAPLAKFVSFTHPSPMLSLANAFSEEEIIDFDNRLKR---LASVDNISYVAE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEV 187 PK+DG + I YE G F+ A RGDG +GEDV+ ++ I T+P + + IP +EV Sbjct: 116 PKLDGLAVNIIYENGFFIKGATRGDGTTGEDVTQNLKTINTLPLKIKKSGETLIPSFMEV 175 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY+ K F LN + G +P+ANPRNAA+G LR+L+ R L+ F++G+G Sbjct: 176 RGEVYMEKEPFEKLNQRRVKDGEEPFANPRNAAAGSLRQLDSKITARRPLSIFLYGIGNI 235 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + +E+LQ + GFPVN + QA + + Y+N + + R TLPYDIDG+V KV Sbjct: 236 QGMNFPTHWELLQALSVWGFPVNKLIEQAKDINACIRYFNRIGNARDTLPYDIDGVVLKV 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D +LQ LG +R+PRW ++ KF +Q +T + DI IQ+GR G LTPVA +EPVN+GG Sbjct: 296 DGLALQNTLGNISRNPRWALACKFPAQQETTIIKDIIIQVGRMGTLTPVAIMEPVNVGGV 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++ ATLHNED I +D+R+GD V+++RAG+VIP+VV +I R + Sbjct: 356 MVSRATLHNEDEISK-----------KDVRIGDAVIIQRAGDVIPEVVKVIDKNRTDRGK 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F PS CP C S VVR A RC ++C AQ E ++HF SR A +IEGL Sbjct: 405 KFKMPSHCPECGSEVVRFEGE------VAQRCVN-ISCPAQLKEHIRHFASRGALDIEGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++ F ++ I PAD++ L + K+ + + S L DSI + + Sbjct: 458 GEKLSAQLFDAK----LIADPADLYFLTKD------KLLELDRQAEKSAQKLIDSIARSK 507 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 N L++FI++LGIRHVG A+ LA Y+ S +N L + +G Sbjct: 508 NPPLDKFIYALGIRHVGERTAKLLAGYFGSIENLIAA----------KSEDLTVINEIGP 557 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I+ +IVEF+ P+N ++ K + E + ++ + K VFTGT++++ R+KA Sbjct: 558 EISASIVEFFHEPKNKAVMKKFEKAGVI-PQKKEISHNAPLAGKAFVFTGTMERMGRNKA 616 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ V +G V + +++KT ++ G PGSKL+KA G+KI++E++FL L+ + Sbjct: 617 KDIVENMGGTVQSGVTKKTTYVVAGAEPGSKLDKANSSGIKIISEDEFLKLIGK 670 >gi|189425977|ref|YP_001953154.1| DNA ligase, NAD-dependent [Geobacter lovleyi SZ] gi|254781338|sp|B3E8F8|DNLJ_GEOLS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|189422236|gb|ACD96634.1| DNA ligase, NAD-dependent [Geobacter lovleyi SZ] Length = 683 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 257/708 (36%), Positives = 385/708 (54%), Gaps = 44/708 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + A+ + L + + +H+ CYY+ P I D+EYDAL R I A PDL P+ Sbjct: 13 PDTAQLRAAELRRLLEHHNRCYYELDSPEISDAEYDALFRELQVIEAARPDLL---TPDS 69 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG+ +V H +P LSLE +++R F RI D ++ + EPK Sbjct: 70 PTLRVGGKPLARFSQVRHRMPMLSLENAMQEDEIRGFEQRIRSLLALPDTVALQYQCEPK 129 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG + + Y+ G V A+ RGDG GE+V+A IR + +P L+ + P ++EVRGEVY Sbjct: 130 MDGLAVELVYQDGLLVQASTRGDGEVGEEVTANIRTVRNVPLRLTGDNLPALLEVRGEVY 189 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251 + F LN + G P+ANPRNAA+G +R+L+P R L +G+G E A Sbjct: 190 LPLAAFQQLNQQREEAGEPPFANPRNAAAGSIRQLDPAVVARRPLAMVCYGVG-VMETEA 248 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + Q E++ ++ G PV++ RQ + G ++ + +++ R +L Y+IDG+V KVD+ L Sbjct: 249 RTQTELMSQLAAWGLPVSDQARQVSGIEGAIACFQDLQERRDSLLYEIDGMVIKVDDLRL 308 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LGE++RSPRW I+ KF +QA+TR+ +I + +GRTG++TPVA LEPV + G ++ A Sbjct: 309 QQELGEKSRSPRWAIACKFPPRQATTRINEIILSVGRTGVITPVASLEPVELSGVTVSRA 368 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I+ +DIRVGDRV+V+RAG+VIP VV +++++R Q P Sbjct: 369 TLHNWDEIRR-----------KDIRVGDRVIVERAGDVIPAVVKVLLDKRSGTEQELPEP 417 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C SR R+ A RC GGLAC Q E + HF SRDA +I+GLG + + Sbjct: 418 ETCPVCGSRAAREAGE------VAVRCQGGLACPPQLAESIIHFASRDAMDIDGLGSKYI 471 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + ++ AD++ L R GD NL +I + L Sbjct: 472 EQLIS----LGLVKDIADLYRLTRDDFMQF------ERMGDKLAENLLAAIASSKQQELS 521 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RFIF+LGIRHVG AR+LA+ + S N L + VG +A + Sbjct: 522 RFIFALGIRHVGERTARTLAERFGSIDNLQTAT----------LEELTSIRDVGPAVAIS 571 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 I F+ P N ++ L + EK V + VFTGTL + R +A++ V Sbjct: 572 IRSFFDAPANQTVLQRLKAAGV-APTVEEKRVGGRLAGLTFVFTGTLATLGRDEAKKLVE 630 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G V+ +S+KTD ++ G GSKLEKA+ LG+ +++E+ F LL Sbjct: 631 AEGGNVTGSVSKKTDYVVAGSEAGSKLEKARNLGITVLSEDAFSKLLA 678 >gi|187477571|ref|YP_785595.1| DNA ligase [Bordetella avium 197N] gi|123752160|sp|Q2KUU5|DNLJ_BORA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|115422157|emb|CAJ48681.1| DNA ligase [Bordetella avium 197N] Length = 695 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 264/732 (36%), Positives = 393/732 (53%), Gaps = 66/732 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + AR++ + L EI+ H+ YY Y +P I D++YDAL R A+ P+L P+ Sbjct: 5 EQAAREQAARLRAEIAQHNIRYYVYDEPSITDADYDALMRELMALEAQHPELV---TPDS 61 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK----DDNSIFFT 129 P ++G V H++P LSL + ED+ F R+ ++ + Sbjct: 62 PTQRVGAAPLAEFGSVRHAVPMLSLGNGFEDEDVLAFDKRVSDTLREAGLLGPAEQAHYF 121 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E K+DG I++RYE G+ V AA RGDG GEDV+A IR I IP L P ++EVRG Sbjct: 122 CELKLDGLAISLRYENGELVQAATRGDGQEGEDVTANIRTIRAIPLQLRAGAPAVLEVRG 181 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS- 247 EV +++ DF LN + A G K + NPRNAA+G LR+L+P R L FF + G+ Sbjct: 182 EVLMNRADFEKLNQKQAARGEKIFVNPRNAAAGSLRQLDPRVTAQRPLRFFAYSWGEVQG 241 Query: 248 ------------------EIFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEM 288 + ML + LG P +A G++++Y + Sbjct: 242 LSRDDAPAFDEASPGLVSTLPRDTHGGMLDWLAGLGLPVNVRFNHKAQGAEGLLAFYRRI 301 Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348 + R +LPYDIDGLVYKVD + Q+ LG AR+PRW ++HKF ++A+T LLDI++Q+GR Sbjct: 302 GAERGSLPYDIDGLVYKVDALAAQRVLGYVARAPRWALAHKFPAEEATTELLDIEVQVGR 361 Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408 TG +TPVARL+PV +GG +TNATLHNED I+ +D+R+GDRV+V+RAG+ Sbjct: 362 TGAITPVARLKPVFVGGVTVTNATLHNEDEIRR-----------KDVRIGDRVIVRRAGD 410 Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 VIP+VV ++ +R + F P+ CPIC S + R ++ A RCTGGL C AQ+ Sbjct: 411 VIPEVVGPVLEKRSGELPQFVMPTHCPICGSAIERLVDE------AIARCTGGLFCPAQR 464 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 + L H R A +IEGLG++ ++ + S++ AD+F L ++ + Sbjct: 465 KQTLLHAAGRKALDIEGLGEKLVEQLVDN----GSLKTLADVFRLNA------FELAALD 514 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 G S NL +I++ R SL R +F+LGIRHVG AR +A+++ + Sbjct: 515 RMGKKSADNLVAAIDQARRPSLGRLLFALGIRHVGETTARDVARHFGNIDAIMDA----- 569 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648 D +L+ VP VG ++A +I F+Q N + L K+ + S ++ Sbjct: 570 -----DEAALLAVPDVGPVVAGSIHRFFQEAHNREVIRELEKQGV-HPQAEAQLQSGDLA 623 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K V TGT+ R +A ++ G VS +S+KT ++ G+ GSKL KA++LGV I Sbjct: 624 GKTFVLTGTMPTWSRDEATRHILAAGGKVSGSVSKKTAYVVAGEEAGSKLVKARELGVTI 683 Query: 709 MNEEQFLFLLQQ 720 ++E+ LL Q Sbjct: 684 LDEDGLKALLSQ 695 >gi|77360026|ref|YP_339601.1| NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis TAC125] gi|123730523|sp|Q3IKB8|DNLJ_PSEHT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|76874937|emb|CAI86158.1| NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis TAC125] Length = 673 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 243/712 (34%), Positives = 379/712 (53%), Gaps = 46/712 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 ++++ L + H YY P I D+EYD L ++ A+ P+L + + P Sbjct: 3 SSISEQINHLRSTLEQHSYNYYVLDTPSIPDAEYDRLLQQLSALETQHPELITA---DSP 59 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 K+GG +V H +P LSL+ ++ ++ F RI + + F EPK+ Sbjct: 60 TQKVGGAALSKFEQVAHQVPMLSLDNAFSEDEFIAFNRRIKERLMSTE--ELTFCCEPKL 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193 DG ++I Y G V AA RGDG +GE+V+ ++ I +P L + P +EVRGEV++ Sbjct: 118 DGLAVSIIYRDGVLVQAATRGDGLTGENVTQNVKTIRNVPLKLRGSDYPAELEVRGEVFM 177 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEIFA 251 F N E G K + NPRNAA+G LR+L+ R L F+ + G A Sbjct: 178 DNAGFEKFNIEAEKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGSIA 237 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + Y+ L+K+ G P+ + ++YY ++ + R L Y+IDG+V K+++ +L Sbjct: 238 EDHYQQLEKLTDWGLPLCPETKLVEGPQAALAYYTDILTRRGELKYEIDGVVIKINQKAL 297 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG AR+PRW I++KF ++ T+LLD++ Q+GRTG +TPVARLEPV +GG ++NA Sbjct: 298 QERLGFVARAPRWAIAYKFPAQEEITKLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNA 357 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I L ++VGD V+++RAG+VIP++ +++ R DA+ FP Sbjct: 358 TLHNGDEIARL-----------GVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIEFP 406 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CPIC S V + A RCTGGL C AQ+ + +KHF SR A +I+GLG + + Sbjct: 407 VTCPICDSHVEKVEGE------AVARCTGGLVCPAQRKQAIKHFASRKALDIDGLGDKIV 460 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 D E I+ PAD+F L++ E++ G S NL ++ + +L Sbjct: 461 DQLVDRE----LIKTPADLFILKQ------GHFESLERMGPKSAKNLVTALQDAKATTLA 510 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 +F++SLGIR G ++LA ++L+ +N SL +V VG+I+A Sbjct: 511 KFLYSLGIREAGEATTQNLANHFLTLENVINA----------SIDSLTQVSDVGEIVATH 560 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 + F+ N+ V AL+++ + V TGTL + R+ A+ + Sbjct: 561 VRSFFAEQHNLDVVNALVEQGINWPELTPPSAQEQPLAGLVYVLTGTLNTLNRNDAKARL 620 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 QLGA VS +S KTD ++ G+ GSKL KAQ LG+ ++ EE + LL+Q+N Sbjct: 621 QQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDVLTEEDLINLLEQHN 672 >gi|239815926|ref|YP_002944836.1| DNA ligase, NAD-dependent [Variovorax paradoxus S110] gi|239802503|gb|ACS19570.1| DNA ligase, NAD-dependent [Variovorax paradoxus S110] Length = 694 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 242/719 (33%), Positives = 377/719 (52%), Gaps = 66/719 (9%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L +++ H YY P + D+EYD L +R A+ +P+L P+ P ++GG++ Sbjct: 14 LSEQLHKHAHLYYVLDAPELPDAEYDRLFQRLQALEAEYPEL---RTPDSPTQRVGGKVL 70 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLR-----KFITRIYRFWQKKDDNS-IFFTLEPKIDGT 137 KV H +P LS I D+ F R+ + +D + + E K DG Sbjct: 71 EGFVKVRHKVPMLS---IRTETDISPGGASAFDARVRKELGLAEDGPQVEYVCELKFDGL 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + +RYE G V AA RGDG GE+V+ IR + IP L+ P ++EVRGE+Y+ + D Sbjct: 128 AMNLRYENGVLVQAATRGDGEVGEEVTQNIRTVREIPLRLNGKAPPVVEVRGEIYMKRAD 187 Query: 198 FLALNDEMI------AVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSE-- 248 F ALN+ K + NPRNAA+G +R+L+P +FF +GLG+ + Sbjct: 188 FEALNERQREKIAAGQKNEKVFVNPRNAAAGAVRQLDPAIAAARPLSFFAYGLGEVTPAS 247 Query: 249 ---IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 Q++ LQ+ GFPV +A +++++ + R LPYDIDG+VYK Sbjct: 248 EGGPEFPTQFDWLQQFHAWGFPVATQTARATGAIELIAFHENIGRQRDALPYDIDGVVYK 307 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD LQ++LG +R PRW ++HK+ ++ T +L I++Q+GRTG LTPVA+L PV +GG Sbjct: 308 VDSIELQRRLGFVSREPRWAVAHKYPAQEQITEVLGIEVQVGRTGKLTPVAKLAPVFVGG 367 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE--RHP 423 +TNATLHNED + +D+RVGD+V+V+RAG+VIP+VV ++ R Sbjct: 368 VTVTNATLHNEDEARR-----------KDVRVGDKVIVRRAGDVIPEVVGVVPESLARPE 416 Query: 424 DAQP--FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 + F+ P CP+C S +R+ +RCTGGL C+AQ+ E + HF +R A Sbjct: 417 GERGLLFTMPHQCPVCGSEALREEGE------VDYRCTGGLFCAAQRKEAILHFAARRAV 470 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +I+GLG + ++ A IR D++ L + + D S NL D+ Sbjct: 471 DIDGLGDKLVEQLVD----ANLIRTLPDLYKL------GFATLAGLDRMADKSAKNLVDA 520 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 + + +L RF+F LGIRHVG A+ L+K++ L+ V Sbjct: 521 LEASKKTTLPRFLFGLGIRHVGESTAKDLSKHFGKLDAIMDASE----------EQLLEV 570 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 VG ++AQ++ F+ P N VE L ++ G + V TGTL Sbjct: 571 NDVGPVVAQSLRTFFDQPHNREVVEQLRACGLTWEEGEPAARAPKPLAGLTFVITGTLPT 630 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R +A++ + GA V+ +S+KT ++ G+ GSKL+KA+++GV++++E + L LL Sbjct: 631 LSRDEAKDKLEAAGAKVAGSVSKKTSYLVAGEEAGSKLDKAREIGVEVIDEARMLELLA 689 >gi|30249713|ref|NP_841783.1| NAD-dependent DNA ligase [Nitrosomonas europaea ATCC 19718] gi|75540341|sp|Q82TW6|DNLJ_NITEU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|30180750|emb|CAD85664.1| NAD-dependent DNA ligase [Nitrosomonas europaea ATCC 19718] Length = 681 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 253/722 (35%), Positives = 382/722 (52%), Gaps = 52/722 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + L +L I+ HD YY P+I D+EYDAL R + +P L P Sbjct: 2 ISENTIEERLQALRAAIALHDFHYYVQDAPVIPDAEYDALFRTLQQLEQQYPHLV---TP 58 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G ++TH P LSL ++ E++ F RI + + + +E Sbjct: 59 DSPTQRVGAPPLKVFAQLTHQTPMLSLANAFSEEEVTAFDRRIREALNI---DRVDYAVE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-EIIEVRGE 190 PK DG I++ Y G A RGDG++GED++ +R IP+IP L + P EVRGE Sbjct: 116 PKFDGLAISLIYANGILTKGATRGDGYTGEDITLNLRTIPSIPLRLQVPFPTGQFEVRGE 175 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLG--KTS 247 V + K DF LN++ G K + NPRNAA+G LR+L+ R L FF +G+G Sbjct: 176 VVMLKTDFERLNEQQRKNGEKTFVNPRNAAAGSLRQLDSRITAMRRLTFFAYGIGAYHED 235 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + E+L + F V +G+++YY EM ++R +LPY+IDG+VYKV+ Sbjct: 236 QPIFSTHSEILAYLATQQFLVARQSSTVMGANGLLAYYREMNAVRLSLPYEIDGVVYKVN 295 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + Q++LG +R+PR+ I+HKF ++ ST LL I+IQ+GRTG LTPVARL PV +GG Sbjct: 296 DLAQQEKLGYVSRAPRFAIAHKFPAQEVSTELLAIEIQVGRTGALTPVARLAPVFVGGVT 355 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +TNATLHNED ++ + I +GD V+V+RAG+VIP+VV +IV R AQ Sbjct: 356 VTNATLHNEDEVQR-----------KQIMIGDTVIVRRAGDVIPEVVAVIVERRPTHAQA 404 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P CP+C S+ VR + A RCTGGL C AQ+ + + HF SR A +I+GLG Sbjct: 405 FVMPDHCPVCGSKAVRLPDE------AVTRCTGGLYCPAQRKQAILHFASRRAIDIDGLG 458 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ +D E + PAD++ L + + S NL +I + Sbjct: 459 EKLVDQLIDRE----LVHTPADLYRL------DIDTLAGLERMAGKSARNLVTAIEDSKK 508 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L RFI++LGIRHVG A++LA + + L ++P +G I Sbjct: 509 TTLPRFIYALGIRHVGEATAKALASHTGDLDRLMD----------MNAEQLQQIPDIGPI 558 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IE--NKKLVFTGTLQKIQ 662 +AQ+I +F+ N +E LL S + K V TGTL + Sbjct: 559 VAQSIADFFSEAHNREVIEQLLSCGLQWEKPSHIAQPSSRTNLAVPGKTFVLTGTLPTMT 618 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 R +A+ + Q G V+ +S T ++ G +PGSK +A +LG+ +++E+Q L LL+ + Sbjct: 619 RDQAKNRIEQQGGKVTGSVSSATSYVVAGSDPGSKYARAIELGIPVLDEDQLLSLLRDTS 678 Query: 723 TT 724 ++ Sbjct: 679 SS 680 >gi|260912664|ref|ZP_05919150.1| DNA ligase [Pasteurella dagmatis ATCC 43325] gi|260633042|gb|EEX51207.1| DNA ligase [Pasteurella dagmatis ATCC 43325] Length = 673 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 248/709 (34%), Positives = 391/709 (55%), Gaps = 46/709 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E + E+ L + + ++ Y+ P + D+EYD L + + +P Sbjct: 1 MS-EPIQFEMEQLRKTLRRYEYQYHVLDNPTVPDAEYDRLFHQLKKLEREYPQFI---TE 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G + +VTH IP LSL+ +++ ++ + F+ RI + F E Sbjct: 57 DSPTQRVGAKPLSGFAQVTHEIPMLSLDNVFSDDEFKAFVKRIQDRL-LVLPKQLTFCCE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190 PK+DG ++I Y GK V AA RGDG +GED+++ IR I IP L N P +EVRGE Sbjct: 116 PKLDGLAVSILYVDGKLVQAATRGDGTTGEDITSNIRTIRNIPLQLLMDNPPGRLEVRGE 175 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS-E 248 V++ + F ALN++ + G K +ANPRNAA+G LR+L+P ++ + +G Sbjct: 176 VFMPQAGFEALNEQALIKGEKTFANPRNAAAGSLRQLDPKITSQRPLVLNAYSIGIAEGV 235 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 +E LQ ++ +G PVNN ++ + ++ +Y + RS L YDIDG V K++E Sbjct: 236 ELPVTHFERLQWLKSIGIPVNNEIQLCDGIENVLDFYRTIMKKRSDLGYDIDGTVLKINE 295 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ++LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+L PV + G + Sbjct: 296 IALQQELGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLAPVFVAGVTV 355 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I L D+ +GD V+++RAG+VIP+++ ++ +R DA+ Sbjct: 356 SNATLHNGDEIARL-----------DVAIGDTVIIRRAGDVIPQIIGVVHEKRPADAKKI 404 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FPS CP+C S +VR A RCTGGL C+AQ+ E LKHFVSR A +I+G+G Sbjct: 405 EFPSNCPVCDSIIVRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGA 458 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E I PAD+F L T + + G S N DS+ K + Sbjct: 459 KLIEQLVDREQ----IHTPADLFKL------DLTTLMRLERMGPKSAQNALDSLEKAKKT 508 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFIF+LGIR VG A +LA Y+ + + L +V VG+++ Sbjct: 509 TLARFIFALGIREVGEATALNLANYFKTLTALKEAT----------LEQLQQVQDVGEVV 558 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQ 667 A I F++ P N+ V+ LL + + + K +V TGTL ++ R +A+ Sbjct: 559 ANRIFVFWREPHNVEVVDDLLAQGIHWDAVEITEANDNPFKEKTIVLTGTLTQMGRTEAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + +LGA VS +S KTD++I G++ GSKL KA +L V++++E+ FL Sbjct: 619 ALLQRLGAKVSGSVSAKTDLVIAGESAGSKLTKANELNVQVIDEQTFLD 667 >gi|304321380|ref|YP_003855023.1| NAD-dependent DNA ligase [Parvularcula bermudensis HTCC2503] gi|303300282|gb|ADM09881.1| NAD-dependent DNA ligase [Parvularcula bermudensis HTCC2503] Length = 727 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 286/742 (38%), Positives = 420/742 (56%), Gaps = 43/742 (5%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 E LS +A EL+ L E++ D Y P++ D+ YDAL+RR +AI FP L R+ Sbjct: 7 PEELSEAEAADELARLAHEMAAADIAYENAD-PVMTDAAYDALRRRNEAIEARFPHLRRA 65 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P ++G + KV H++P LSL+ + ED+ +F+TR+ RF + ++ + Sbjct: 66 ---DSPSLRVGTAPSGRFAKVRHALPMLSLDNAFADEDVDEFVTRVRRFLRLGEEEPLRL 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +RYE+GKFV RGDG GED++ + I IP L I+EVR Sbjct: 123 TAEPKIDGLSANLRYEEGKFVLGTTRGDGTVGEDITRNLATIENIPARLEGAPS-ILEVR 181 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVY+ K F A+ND A G K +ANPRNAA+G LR+ +P+ R L FF + G+ S Sbjct: 182 GEVYLGKEAFAAMNDAFAARGEKVFANPRNAAAGSLRQKDPSITADRPLRFFAYAWGEVS 241 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + Q E ++++ LGF N + T +++Y ++++R+ L YD+DG+VYKVD Sbjct: 242 SPLGETQTEAVKRLSDLGFCTNELMGTFATAKEAIAHYRHIETLRAALDYDVDGVVYKVD 301 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 Q++LG +RSPRW I+HKF+ ++A T L IDIQ+GRTG LTP ARL PV +GG + Sbjct: 302 RLDWQERLGAVSRSPRWAIAHKFSAEKAETVLERIDIQVGRTGALTPTARLRPVTVGGVV 361 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHNED I L D+R GD V V+RAG+VIP+++ ++ +R +AQP Sbjct: 362 VSNATLHNEDEIARL-----------DVREGDSVCVQRAGDVIPQILSVLTEKRPKEAQP 410 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + FP+ CP+C S VR+LN KTG+ RCTGGL C AQ +ERLKHFVSR A +I+GLG Sbjct: 411 YRFPTHCPVCGSEAVRELNEKTGERDVVRRCTGGLICPAQGIERLKHFVSRKAMDIDGLG 470 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK---------------------IEN 526 +Q++ F+ I PADIFTL R T Sbjct: 471 ARQIEDFYGR----HMIAEPADIFTLPARYHQGTFDVIGTSDLNSYKRLAPTATKPARWT 526 Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 S+ NL+ +I R+ L R IF+LGIRH+G R +A+ + F + + Sbjct: 527 KEITNRKSLDNLFAAIEAARSRPLGRVIFALGIRHIGEMNGRLIAQGVETLSGFCRLGDR 586 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 + + ++ + +GD + A+ F+ PRN A++ L E+SP+ S Sbjct: 587 LAKGDEAARQEMLAIDGIGDTVTDALAAFFHEPRNREALDRLAAEISPAAPPKPA-QDSR 645 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 K +VFTG L+++ R +A+ T LGA VS +S KTD ++ G GSKL KA+ LGV Sbjct: 646 FSGKTVVFTGKLERMSRDEAKARATSLGAKVSGSISAKTDYLVAGPGAGSKLTKAKDLGV 705 Query: 707 KIMNEEQFLFLLQQYNTTLRIH 728 I+ E+++L + ++++ Sbjct: 706 DILTEDEWLEFISDEAVSVQLE 727 >gi|33602779|ref|NP_890339.1| DNA ligase [Bordetella bronchiseptica RB50] gi|81429836|sp|Q7WCJ7|DNLJ_BORBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|33577221|emb|CAE35778.1| DNA ligase [Bordetella bronchiseptica RB50] Length = 696 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 257/728 (35%), Positives = 389/728 (53%), Gaps = 69/728 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ ++ L EI H+ YY + P + D+EYDAL R A+ P+L P+ P + Sbjct: 9 QQAIARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELV---TPDSPTQR 65 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----DNSIFFTLEPK 133 +G V H++P LSL ++ ED+R F R+ + D + + E K Sbjct: 66 VGAAPLAEFGSVRHAVPMLSLGNAFDEEDVRAFDKRVADTLRGAGLLGLDQQVEYFCELK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG I++RYE+G+ AA RGDG +GEDV+A IR I +P L ++EVRGEV + Sbjct: 126 LDGLAISLRYEEGRLAQAATRGDGQTGEDVTANIRTIKGVPLRLHGAPR-VLEVRGEVLM 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 ++ +F LN A G K + NPRNAA+G LR+L+P R L FF + G+ + Sbjct: 185 NRAEFERLNRTQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHGLPEG 244 Query: 253 G---------------------QYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKS 290 ML + LG PVN + G++++Y + Sbjct: 245 MPTRFDEPAPGVRVASTLPRDTHGGMLDWLAELGLPVNLRHNHRERGADGLLAFYERIGK 304 Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350 +R+ LPYDIDG+VYKVD Q+ LG AR+PR+ ++HKF ++A T+LL I++Q+GRTG Sbjct: 305 LRADLPYDIDGVVYKVDALPSQRVLGFVARAPRFALAHKFPAEEAVTQLLGIEVQVGRTG 364 Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410 +TPVARL PV +GG +TNATLHNED I+ +D+R+GD V+V+RAG+VI Sbjct: 365 AITPVARLAPVFVGGVTVTNATLHNEDEIRR-----------KDVRIGDTVIVRRAGDVI 413 Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 P+VV ++ +R DA+ F + CPIC S + R A RCTGGL C+AQ+ + Sbjct: 414 PEVVGPVLEKRPADAREFVMLTACPICGSAIERPEGE------AIARCTGGLFCAAQRKQ 467 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530 L H R A +IEGLG++ +D ++ ++ ADI++L ++ + Sbjct: 468 TLLHAAGRKALDIEGLGEKLIDQLVDADR----VKSLADIYSLTA------FELAALERM 517 Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 G S NL +I++ R +L R +F+LGIRHVG AR +A+++ S + Sbjct: 518 GKKSAENLVAAIDQARRPALGRLLFALGIRHVGETTARDVARHFGSMERIMDASE----- 572 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650 +L+ VP VG ++A +I F+ P N VE L ++ E +S + K Sbjct: 573 -----EALLAVPDVGGVVAGSIRRFFAEPHNREIVEQLTQQGVHPQAEAEPEGTS-LAGK 626 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 V TGT+ R +A + G VS +S+KT ++ G++ GSKL KAQ+LGV +++ Sbjct: 627 TFVLTGTMPNWTRDEATRRILAAGGKVSGSVSKKTAYLVTGEDAGSKLTKAQELGVPVLD 686 Query: 711 EEQFLFLL 718 E+ LL Sbjct: 687 EDGLKALL 694 >gi|51893963|ref|YP_076654.1| NAD-dependent DNA ligase [Symbiobacterium thermophilum IAM 14863] gi|81388077|sp|Q67KI8|DNLJ_SYMTH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|51857652|dbj|BAD41810.1| NAD-dependent DNA ligase [Symbiobacterium thermophilum IAM 14863] Length = 673 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 246/710 (34%), Positives = 377/710 (53%), Gaps = 47/710 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + A + + L + I +H+ YY ++P I D+ +D L + + AFPDL R P Sbjct: 1 MDRSWAERRIPELIETIRHHEYLYYVKNEPEISDAAFDELMQELKQLEEAFPDLRR---P 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG KV H P SL+ ++ DLR F R+ + + E Sbjct: 58 DSPTQRVGGATAPDFAKVPHQPPMYSLDNAFSEADLRDFDRRVREGLG---GEPVSYVCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVR 188 KIDG I++RYE G FV A RGDG +GEDV+ +R I +IP L +P + VR Sbjct: 115 LKIDGLSISLRYEDGLFVQGATRGDGETGEDVTENLRTIGSIPLRLDGTEAPVPPRLIVR 174 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GEVY++K LN + A G+ NPRNAA+G LR+ +P R L+ F++ + Sbjct: 175 GEVYMTKQVLEELNAALAAEGKPLLQNPRNAAAGGLRQKDPRKTRERRLDAFLYQVVDAE 234 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + + LQ+++ F VN A+T ++ + ++ R LPY+IDGLV KV+ Sbjct: 235 ALGIADHWSALQRLQAWRFKVNPHRHLAHTIDEVLDWVAGWQARRHELPYEIDGLVIKVN 294 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + Q++LG ++ PRW I++KF ++ T ++ I +++GRTG++TP A L PV I G Sbjct: 295 DLAQQRRLGFTSKFPRWAIAYKFPAEERETTVVGISLEVGRTGVVTPSADLAPVRIAGTT 354 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATLHNEDYI+ +DIRVGD V+V++AGE+IP+VV ++ +R PDAQP Sbjct: 355 VKRATLHNEDYIR-----------EKDIRVGDTVIVRKAGEIIPEVVRVVPEKRPPDAQP 403 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 ++FP CP C + +VR AA RCT L C AQQ + HF SRDA NIEGLG Sbjct: 404 WTFPKTCPACGAELVRIEGE------AATRCTNNL-CPAQQYRAILHFASRDAMNIEGLG 456 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + + I AD++ L ++ + + G+ SV NL +I+ R Sbjct: 457 EALVQSLLDH----GLIEDAADLYRLHEKRD----ALIRLERMGEKSVDNLLAAIDATRQ 508 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 L R IF+LGIRHVG AR LA ++ S + Q L +P +G Sbjct: 509 NPLHRLIFALGIRHVGERAARLLADHFGSMEAIEQA----------GLDELTAIPGLGPK 558 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-NVSSEIENKKLVFTGTLQKIQRHKA 666 IA+++ ++ +PR+ + L +G + + +V TGTL + R + Sbjct: 559 IAESVKNYFASPRSHQLLAKLRAAGVNMVGEKKAGPAEGPLAGMTVVVTGTLVRWSRKEI 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +E + QLG + +SRKT ++ G+ GSKL+KAQ+LG+ ++ E++F Sbjct: 619 EELIQQLGGKAAGSVSRKTSFVVAGEAAGSKLQKAQELGIPVLTEDEFCE 668 >gi|295697355|ref|YP_003590593.1| DNA ligase, NAD-dependent [Bacillus tusciae DSM 2912] gi|295412957|gb|ADG07449.1| DNA ligase, NAD-dependent [Bacillus tusciae DSM 2912] Length = 677 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 256/722 (35%), Positives = 384/722 (53%), Gaps = 57/722 (7%) Query: 12 LSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 +S + A + + L I +D YY P++ D+EYD R + P+L Sbjct: 1 MSDQGDAARRIEELRALIRRYDYHYYVLDDPLVDDAEYDRCMRELVELEARHPELV---T 57 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P+ P ++ G + + KV H P LSL ++ D+R+F R+ + + Sbjct: 58 PDSPTQRVSGAPSEAFAKVIHREPMLSLANAFSEGDVREFDRRVRAAL---PGEDVEYVC 114 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG I++RYE G+FV A RGDG GED++ +R I +P L + +EVRGE Sbjct: 115 ELKIDGLAISLRYENGEFVQGATRGDGELGEDITRNLRTIRVLPLRLPERVS--VEVRGE 172 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH-------G 242 Y+ K FL +N E G + +ANPRNAA+G LR+L+P R L+ +++ G Sbjct: 173 AYMPKKVFLRVNRERDEAGEQAFANPRNAAAGSLRQLDPRVTARRGLSLWMYAAVLGPDG 232 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + E+L+ + LGFPVN R + + NE +R+TLPYDIDG+ Sbjct: 233 TVPGGPGPFRTHEEILKWLDTLGFPVNPHRRVCRNLEEVFQFLNEGDRLRNTLPYDIDGM 292 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KV+ Q +LG A+SPRW +++KFA +QA TRLL I++ +GRTG++TP A EPV Sbjct: 293 VIKVNNLDQQNRLGATAKSPRWAMAYKFAPEQAETRLLTIEVSVGRTGVVTPTAVFEPVF 352 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G ++ A+LHNED I+ RDIR+GD V+V++AGE+IP+VV + + R Sbjct: 353 LAGTTVSRASLHNEDLIR-----------ERDIRIGDIVVVEKAGEIIPEVVRVRADLRT 401 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 + FS P CP C S +VR A RC C AQ E + HF SRDA N Sbjct: 402 GEEHIFSMPKDCPACGSPLVRLEEE------VALRCVNP-DCPAQIQEGIIHFASRDAMN 454 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEGLG+ + ++ I AD++ L+R Q + G S NL +I Sbjct: 455 IEGLGEALVAQLYRE----GLIHSVADLYELKREQLV------PLERMGAKSADNLLQAI 504 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + + SLER +F LGIR++G + +R LA ++ + + L++VP Sbjct: 505 ERSKQNSLERLLFGLGIRYIGEKASRVLAAHFKEMDALMEASS----------EELLKVP 554 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQK 660 +G +AQ+I ++ +E L + G V S + K +V TGTL Sbjct: 555 DIGAKMAQSIRVYFGQESARRLIERLRAHGVNMVYRGAEAAPVPSRLAGKTVVLTGTLHA 614 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R +AQ++V +LG + +SRKTDI+I G++PGSKL KA+QLGV+++NE+QFL +L++ Sbjct: 615 MGRREAQDWVRRLGGKPTESVSRKTDIVIAGEDPGSKLVKARQLGVEVINEDQFLSILRE 674 Query: 721 YN 722 Sbjct: 675 AG 676 >gi|71907364|ref|YP_284951.1| NAD-dependent DNA ligase [Dechloromonas aromatica RCB] gi|123746888|sp|Q47FA0|DNLJ_DECAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|71846985|gb|AAZ46481.1| NAD-dependent DNA ligase [Dechloromonas aromatica RCB] Length = 683 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 258/719 (35%), Positives = 380/719 (52%), Gaps = 54/719 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 E K + E+ H YY P I D+EYD L R + +P+L + + Sbjct: 4 PEDVAKRAAWYRSELERHSYAYYVLDAPTIPDTEYDKLFRELQELEQQYPELLTA---DS 60 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +++GG H +P LSL + E++ F RI + ++ + +EPK Sbjct: 61 PTHRVGGVPLKEFPPRQHGVPMLSLNNAFAPEEVEAFDKRIRDGLETIA--AVDYAVEPK 118 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 DG I++ YE G F A RGDG +GE+V+ +R + IP L P +IE+RGEV Sbjct: 119 FDGLAISLTYENGVFTCGATRGDGVTGEEVTPNLRTLRCIPLRLRGEGWPALIEIRGEVL 178 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + K DF LN G K +ANPRNAA+G LR+L+ R L+FF +G+G ++ + Sbjct: 179 MFKADFAELNARQRERGDKEFANPRNAAAGSLRQLDSKITAGRPLSFFAYGVGAGADALA 238 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K EM+ + GFPV R G++ Y+ E+ R LPYDIDG+VYKV+ Sbjct: 239 VKTHGEMMGLLAAWGFPVAEERRVVQGVRGLLGYFVEIGVKRPGLPYDIDGVVYKVNRLD 298 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q QLG +R+PR+ I+HKF ++A T +L ID+Q+GRTG +TPVARL+PV +GG +TN Sbjct: 299 WQAQLGFVSRAPRFAIAHKFPAEEALTEVLGIDVQVGRTGAITPVARLKPVFVGGVTVTN 358 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD------ 424 ATLHNED ++ +D+R+GD V+V+RAG+VIP+VV I+ +R Sbjct: 359 ATLHNEDEVRR-----------KDVRLGDTVIVRRAGDVIPEVVAIVPEKRPMRDLFGSE 407 Query: 425 --AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 PF P+ CP C S VV+ + A RCTGGL C AQ+ + L HF +R A + Sbjct: 408 PLNPPFELPATCPECGSAVVKGDDE------AIARCTGGLYCPAQRKQALWHFAARRAMD 461 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEGLG + +D A + PAD++ L + G+ S NL +I Sbjct: 462 IEGLGDKLVDQLVD----AGLVHSPADLYGLTVETLAG------LERMGEKSAQNLVAAI 511 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 +K R +L RFIF LGIR+VG AR LAK++ + + VP Sbjct: 512 DKSRQTTLARFIFGLGIRNVGEATARDLAKHFGGLDALLAADSAALQM----------VP 561 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKI 661 VG ++A+++ F+ N ++ L + G + + K LV TGTL + Sbjct: 562 DVGPVVAESLAAFFAEAHNREVIDGLRRAGVSWPEGEPAQAGPQLLAGKTLVLTGTLPTL 621 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +R +A+ V G V+ +S+KTD ++ G+ GSKLEKAQ+LGV +++E + + LL + Sbjct: 622 KRDEAKALVEAAGGKVAGSVSKKTDYVVAGEEAGSKLEKAQELGVPVIDEAELMKLLAK 680 >gi|156740882|ref|YP_001431011.1| DNA ligase [Roseiflexus castenholzii DSM 13941] gi|190359279|sp|A7NHP6|DNLJ_ROSCS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|156232210|gb|ABU56993.1| DNA ligase, NAD-dependent [Roseiflexus castenholzii DSM 13941] Length = 718 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 246/729 (33%), Positives = 380/729 (52%), Gaps = 58/729 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + +L ++I YH+ YY +P+I D+EYDAL R + A P+L P Sbjct: 1 MTSNDPVRRAETLREQIRYHNYRYYVLDEPVISDAEYDALMRELRELEAAHPELV---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G + KV H +P LSL ++ +R + R R D + F +E Sbjct: 58 DSPTQRVGAPPSEQFAKVQHVVPMLSLANAFDEAGMRAWYDRTLRLLGS--DAQVAFVVE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP------------RVLSL 179 PKIDG +T+ Y G V A RGDG GEDV+A +R I +IP Sbjct: 116 PKIDGLAVTLIYRNGVLVRGATRGDGEIGEDVTANLRTISSIPLRLGSFANDDSAPTNPT 175 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NF 238 +P ++EVRGEVY+ DF+ LN+++ G K ANPRNAA+G LR+ +P +R F Sbjct: 176 AVPPLLEVRGEVYMRIADFMRLNEQLAVAGEKVAANPRNAAAGSLRQKDPAVTSRRPLRF 235 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 F +G+G+ + + Q+E L +R LGFPVN R+ F ++Y E + R L Y+ Sbjct: 236 FAYGVGQVEGVALQTQWETLHFLRALGFPVNRDARRFERFEEALAYCREWMTRRDELEYE 295 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 +DG+V K+D F+ Q +LG R PRW I+ KF ++A +RLLDI + +GRTG++TP A + Sbjct: 296 VDGVVVKIDSFAQQAELGVVGRDPRWAIAFKFPAREAVSRLLDIVVNVGRTGVITPNAVI 355 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPVNIGG + NA+LHN DYI RDIR+GD V+VKRAG+VIP +V +V Sbjct: 356 EPVNIGGVTVRNASLHNADYI-----------AERDIRIGDYVIVKRAGDVIPHIVGPVV 404 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 R + + P+ CP C + + R A+RC C AQ R++HFVSR Sbjct: 405 ARRDGSERVWQMPATCPACGTPLERAEGE------VAYRCPNFGICPAQITRRIEHFVSR 458 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I G+G++Q+ F + ++ AD++TL I G+G + NL Sbjct: 459 SAMDIAGIGEKQVQLFVER----GWVQDVADLYTLTPEHFHG------IEGYGPKRIANL 508 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 ++I + ++ L R I LGIR+VG +A+ LA ++ ++ A + Sbjct: 509 LNAIAESKDRPLHRLIVGLGIRYVGEVVAQILADHFG----------SLDALAAASADEI 558 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTG 656 + +G IA ++ E++ P + + L + + + + K V TG Sbjct: 559 DDLEGIGPAIAASVAEYFARPESKALIAKLKRVGVRTEAKGPAVAPKGDALAGKTFVITG 618 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GSKLEKAQQLGVKIMNEEQFL 715 TL + R +A + G VS +S+KTD ++VG P G+K+ KAQ+LG+ ++E L Sbjct: 619 TLPSMSREEAGALIVAHGGRVSGSVSKKTDYLVVGSEPGGTKVAKAQELGIPTLDEAGLL 678 Query: 716 FLLQQYNTT 724 L+ + + Sbjct: 679 ALIGANDRS 687 >gi|260219439|emb|CBA26284.1| DNA ligase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 696 Score = 557 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 260/717 (36%), Positives = 389/717 (54%), Gaps = 56/717 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K L +L +E+ YY P++ D EYD L R + P+ P+ P ++ Sbjct: 20 KRLQALREELHRLGHAYYVLDAPLVPDVEYDRLFRELQDLEAQHPEWV---TPDSPTQRV 76 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIE--DLRKFITRIYRFWQK-KDDNSIFFTLEPKID 135 GG++ + V H++P LS+ + E F TR+ + + + D + + E K D Sbjct: 77 GGQVLDAFTSVRHAVPMLSIRTETDTESTGALAFDTRVRKELELNEGDAPVEYVAELKFD 136 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + +RYE+G V AA RGDG GEDV+ IR I IP L +P ++EVRGEVY+ + Sbjct: 137 GLAMNLRYEQGVLVQAATRGDGEYGEDVTQNIRTIGQIPLRLPDGVPPVLEVRGEVYMRR 196 Query: 196 NDFLALNDEMI------AVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248 +DF ALN+ G K + NPRNAA+G +R+L+P R L+FF +GLG+ + Sbjct: 197 DDFEALNERQRARIAAGEKGEKTFVNPRNAAAGAVRQLDPGIAAQRPLSFFAYGLGEVTP 256 Query: 249 -----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 Y MLQ ++ GFPV V A +++Y+ + + R +LP+DIDG+V Sbjct: 257 AAEGGPDFGSHYAMLQTLKSWGFPVAAQVDTARGAPELIAYHQRIGAGRDSLPFDIDGVV 316 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YKV+ +LQ++LG R PRW ++HK+ ++ T +L ID+Q+GRTG LTPVA+L PV + Sbjct: 317 YKVNSLALQQRLGFVTREPRWAVAHKYPAQEQLTTVLAIDVQVGRTGKLTPVAKLAPVFV 376 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +TNATLHNED + +D+RVGD V+V+RAG+VIP+VV ++ +R Sbjct: 377 GGVTVTNATLHNEDEARR-----------KDVRVGDTVIVRRAGDVIPEVVSVLPEKREG 425 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 DA F+ P CP+CQS VR+ A +RCTGGL CSAQ+ + + HF R A + Sbjct: 426 DAPQFTMPRICPVCQSAAVREEGE------ADYRCTGGLFCSAQRKQAILHFAQRRAVEV 479 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGLG + ++ A IR D++ L + + ++ D S N+ D++ Sbjct: 480 EGLGDKLVEQLVD----ANVIRNLPDLYRL------GLSALASLDRMADKSAQNIVDALE 529 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K + +L RF+F LGIRHVG A+ LA+++ + + D +L+ V Sbjct: 530 KSKQTTLPRFLFGLGIRHVGEATAKELARHFGTLDAIMEA----------DEEALLAVSD 579 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 VG I+AQ+I F+ N VE L V+ G + K LV TGTL + Sbjct: 580 VGPIVAQSIRTFFDQAHNREVVEQLRACGVTWPEGAPADAGPKPLAGKTLVLTGTLPTLG 639 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R A++ + G VS +S+KT ++ G GSKL+KA +LGV +++E L LL+ Sbjct: 640 RDAAKDLIEAAGGKVSGSVSKKTHFVVAGAEAGSKLDKANELGVPVLDEAGLLELLK 696 >gi|166215832|sp|Q5ZWX6|DNLJ_LEGPH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 673 Score = 557 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 249/713 (34%), Positives = 384/713 (53%), Gaps = 46/713 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + ++ + +L+++I +D YY +P++ D+EYD + +P P Sbjct: 1 MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++ G + + V H P LSL ++ ++L+ FI R + + + F E Sbjct: 58 DSPTQRVSGTPSDAFMPVAHKQPMLSLSNVFTTDELKAFIKRAIEKLDE-PNQQLVFACE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG + + YE G +AA RGDG GE+++A I+ I ++P N P++IEVRGE Sbjct: 117 PKLDGLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGE 176 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG-KTSE 248 VYI K DF A N +G K +ANPRNAA+G LR+LNP +R L + +G+G Sbjct: 177 VYIPKADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDY 236 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E L ++ GF V+ R+A G + YY M + R+ LP++IDG+VYK+D Sbjct: 237 KLPNSHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDS 296 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 SLQ+QLG +R+PR+ +HKF + TRL+ +D Q+GRTG +TPVARLEPV++GG + Sbjct: 297 ISLQQQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTV 356 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I +DIR+GD V+++RAG+VIP+VV +I+ +R +A+ Sbjct: 357 SNATLHNFDEITR-----------KDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARMI 405 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP+C S VVR+ + A RC GGL C AQ + HF SR A IEGLG Sbjct: 406 ELPKNCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGS 459 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 +D + AD++ L + N+ G+ S NL ++ K + Sbjct: 460 VLIDQLVDE----GIVHHLADLYEL------DLQTLANLPRMGEKSAKNLLSALEKSKKT 509 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + RF+++LGIR +G AR LA++Y ++ L+ + +G + Sbjct: 510 TFNRFLYALGIREIGEAGARVLAEHYCDVESLKAAT----------IEELMTLNDIGPVA 559 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A IV F+ N+ ++ LL+ P + + N + K +V TGTL + R +A Sbjct: 560 ASHIVHFFAQAHNLEVIDRLLELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSTMGREEA 619 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + LGA VS +S KTD ++ G GSKL KA +LGV I+ E++FL + Sbjct: 620 KAKLLALGAKVSGSVSSKTDYVVAGSEAGSKLIKATELGVAIIEEDEFLKWVN 672 >gi|52841193|ref|YP_094992.1| DNA ligase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628304|gb|AAU27045.1| DNA ligase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 683 Score = 557 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 249/713 (34%), Positives = 384/713 (53%), Gaps = 46/713 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + ++ + +L+++I +D YY +P++ D+EYD + +P P Sbjct: 11 MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SP 67 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++ G + + V H P LSL ++ ++L+ FI R + + + F E Sbjct: 68 DSPTQRVSGTPSDAFMPVAHKQPMLSLSNVFTTDELKAFIKRAIEKLDE-PNQQLVFACE 126 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG + + YE G +AA RGDG GE+++A I+ I ++P N P++IEVRGE Sbjct: 127 PKLDGLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGE 186 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG-KTSE 248 VYI K DF A N +G K +ANPRNAA+G LR+LNP +R L + +G+G Sbjct: 187 VYIPKADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDY 246 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E L ++ GF V+ R+A G + YY M + R+ LP++IDG+VYK+D Sbjct: 247 KLPNSHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDS 306 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 SLQ+QLG +R+PR+ +HKF + TRL+ +D Q+GRTG +TPVARLEPV++GG + Sbjct: 307 ISLQQQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTV 366 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I +DIR+GD V+++RAG+VIP+VV +I+ +R +A+ Sbjct: 367 SNATLHNFDEITR-----------KDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARMI 415 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP+C S VVR+ + A RC GGL C AQ + HF SR A IEGLG Sbjct: 416 ELPKNCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGS 469 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 +D + AD++ L + N+ G+ S NL ++ K + Sbjct: 470 VLIDQLVDE----GIVHHLADLYEL------DLQTLANLPRMGEKSAKNLLSALEKSKKT 519 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + RF+++LGIR +G AR LA++Y ++ L+ + +G + Sbjct: 520 TFNRFLYALGIREIGEAGARVLAEHYCDVESLKAAT----------IEELMTLNDIGPVA 569 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A IV F+ N+ ++ LL+ P + + N + K +V TGTL + R +A Sbjct: 570 ASHIVHFFAQAHNLEVIDRLLELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSTMGREEA 629 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + LGA VS +S KTD ++ G GSKL KA +LGV I+ E++FL + Sbjct: 630 KAKLLALGAKVSGSVSSKTDYVVAGSEAGSKLIKATELGVAIIEEDEFLKWVN 682 >gi|288554984|ref|YP_003426919.1| NAD-dependent DNA ligase LigA [Bacillus pseudofirmus OF4] gi|288546144|gb|ADC50027.1| NAD-dependent DNA ligase LigA [Bacillus pseudofirmus OF4] Length = 668 Score = 557 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 248/712 (34%), Positives = 387/712 (54%), Gaps = 54/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + ++A K + +L +++ + YY +P++ D+EYD L + A+ P+L Sbjct: 1 MDRQEAEKRVQTLREKLEEYGYHYYVLDQPLVTDAEYDQLMQELIALEGEHPELV---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GGE KV H IP LSL +N +DLR F R+ +++ ++ E Sbjct: 58 DSPSVRVGGEPLPFFEKVEHQIPMLSLGNAFNDQDLRDFDRRVRERVG----DNVTYSCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YE GKFV A RGDG GED++ ++ IP IP L L +EVRGE Sbjct: 114 LKIDGLAVSLTYENGKFVRGATRGDGTIGEDITNNLKTIPAIP--LKLKQEASLEVRGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F ALN+ G + +ANPRNAA+G LR+L+P R L+ F++ +G Sbjct: 172 YMPKKSFEALNEAKSEAGEEKFANPRNAAAGSLRQLDPKIAAKRNLSIFIYAIGNAEGQD 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +E L ++ LGF VNN + T ++ Y NE R+ LPY+IDG+V KVD Sbjct: 232 LASHHEGLAYLKELGFKVNNESKHCATIEEVIEYTNEWLDKRADLPYEIDGIVIKVDSIE 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 QK+LG A+SPRW + KF ++ T L DI++ +GRTG++TP A L+PV + G + Sbjct: 292 QQKELGFTAKSPRWATAFKFPAEEVVTVLRDIELSVGRTGVVTPTAILDPVVVAGTTVKR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +D+++GD V+VK+AG++IP+VV+++ + R + FS Sbjct: 352 ASLHNEDLIR-----------EKDVKLGDTVIVKKAGDIIPEVVNVLTDRRDGRERDFSM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR A NI+GLG++ Sbjct: 401 PTHCPECESELVRLEGE------VALRCINP-ECPAQIREGLIHFVSRQAMNIDGLGEKV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ + I AD++ L R +++ + G+ SV NL +I + SL Sbjct: 454 IAQLFEHK----LIHTVADLYQLDR------SELLKLERMGEKSVDNLMKAIEASKENSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E+ +F LGIR VG++ A++LA + S + D +L+ V +G+ +A Sbjct: 504 EKLLFGLGIRFVGSKAAKTLAMEFESIDAIIEA----------DEAALVAVNEIGEKMAA 553 Query: 611 AIVEFYQNPRNICAVEALLKEVS------PSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 +IV F++ ++ L P + S NK +V TG L ++ R Sbjct: 554 SIVRFFETDEVKELIKRLQSYGVNTTYKGPKPVNGTEAAESPFANKTVVLTGKLYEMTRD 613 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +A+E + LG V+ +S+KTDI+I G++ GSK +KA++LG++I +E L Sbjct: 614 EAKEKIETLGGKVTGSVSKKTDIVIAGEDAGSKKKKAEELGIEIWDEAALLK 665 >gi|145589636|ref|YP_001156233.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|190359270|sp|A4SYV5|DNLJ_POLSQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145048042|gb|ABP34669.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 671 Score = 557 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 273/715 (38%), Positives = 396/715 (55%), Gaps = 48/715 (6%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + + S + L+ E++ + YY P++ D EYD L R I A P S Sbjct: 1 MSSNSPTNLADRYAFLQAELARLEHAYYVLDNPLLPDIEYDRLYRELLDIEAAHPQWVTS 60 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 E ++GG VTH++P LSL + +L F R + + + Sbjct: 61 E---SLSQRVGGTALKEFDSVTHAVPMLSLNNAFEDSELIAFDRRCREALHVEH---VAY 114 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187 E K DG I++RYE G V AA RGDG SGEDV+A I+ I IP L+ PEI+EV Sbjct: 115 AGELKFDGLAISLRYENGTLVTAATRGDGASGEDVTANIKTIRAIPLKLTGKNIPEILEV 174 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-- 244 RGEV++ DF +N + +G K +ANPRNAA+G LR+L+ R L+FF +GLG Sbjct: 175 RGEVFMYLKDFEKMNRQAAELGEKEFANPRNAAAGSLRQLDSKITAKRPLSFFAYGLGAL 234 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + K E+L LG PV + R ++ I+++YNE+ + R +LPYDIDG+VY Sbjct: 235 EPQSWLPKTHEELLNAYVELGLPVCSERRVLHSVEEILAFYNEIGAKRDSLPYDIDGVVY 294 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ F+ Q +LG +R+PR+ ++HK+ ++A T +L ID+Q+GRTG +TPVARL PV +G Sbjct: 295 KVNSFAEQAKLGFVSRAPRFALAHKYPAQEALTTVLGIDVQVGRTGAITPVARLAPVEVG 354 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +TNATLHNED +K +D+R+GD V V+RAG+VIP+VV +I R D Sbjct: 355 GVTVTNATLHNEDEVKR-----------KDVRIGDTVSVRRAGDVIPEVVSVIKERRPSD 403 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+ F PS CP+C S + R + A RC+GGL C AQ+ + L HF R A +IE Sbjct: 404 AKEFVMPSRCPVCDSHIERLADE------AVARCSGGLFCGAQRKQALIHFAHRRALDIE 457 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++ +D +R PAD++ L T + N+ G+ S NL +IN+ Sbjct: 458 GLGEKIVDQLVDQN----LVRTPADLYRL------GFTALANLERMGEKSADNLIQAINQ 507 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 RN +L RFIF+LGIRHVG A+ LA +Y S L+ V V Sbjct: 508 SRNTTLARFIFALGIRHVGETTAKDLANHYQSMHALMDA----------SVEELLTVKDV 557 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G ++A +I F Q N +E LL + EK +S+ + K V TGT + R Sbjct: 558 GPVVADSITSFMQEAHNREVIEQLLASG-MQLSVEEKIISAAVFGKTFVLTGTFPTMTRD 616 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A++ + + GA V+ +S+KTD ++ G + GSKL KA++LGV +++EE+ L LL+ Sbjct: 617 EAKDLLEKAGAKVAGSVSKKTDYVVAGTDAGSKLAKAEELGVPVIDEEEMLNLLK 671 >gi|148658591|ref|YP_001278796.1| DNA ligase [Roseiflexus sp. RS-1] gi|166216236|sp|A5V1U3|DNLJ_ROSS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148570701|gb|ABQ92846.1| DNA ligase, NAD-dependent [Roseiflexus sp. RS-1] Length = 726 Score = 557 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 255/727 (35%), Positives = 386/727 (53%), Gaps = 62/727 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + + + +L ++I YH+ YY +P+I D+EYDAL R A+ A P+L P Sbjct: 1 MNNDHLTRRVEALREQIRYHNYRYYVLDEPVISDAEYDALMRELRALEAAHPELV---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G KV H +P LSL + ++R + R+ R +D + F +E Sbjct: 58 DSPTQRVGAPPGEQFAKVQHVVPMLSLANASDEAEVRAWYDRVVRLLG--NDARVAFVVE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP----------------R 175 PKIDG +T+ Y G V A RGDG +GEDV+A +R IP IP Sbjct: 116 PKIDGLAVTLIYRNGILVRGATRGDGETGEDVTANLRTIPGIPLRLGAFASNPEGQTNGA 175 Query: 176 VLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITR 234 + IP +IEVRGEVY+ DFL LN+++ A G K ANPRNAA+G LR+ +P R Sbjct: 176 PVQAVIPPLIEVRGEVYMRIADFLRLNEQLAASGEKVAANPRNAAAGSLRQKDPAITARR 235 Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 L FF +G+G+ + + Q+E L +R LGFPVN R+ ++Y E + R Sbjct: 236 PLRFFAYGIGQIEGVQVQTQWETLNLLRTLGFPVNRDARRFERLDDALAYCREWMTRRDE 295 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L Y++DG+V K+D + Q QLG R PRW I+ KF ++A +RL+DI + +GRTG++TP Sbjct: 296 LEYEVDGVVIKIDSLAQQAQLGVVGRDPRWAIAFKFPAREAVSRLIDIVVNVGRTGVITP 355 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 A +EPVNIGG + NA+LHN DYI RDIR+GD V+VKRAG+VIP +V Sbjct: 356 NAVIEPVNIGGVTVRNASLHNADYI-----------AERDIRIGDYVIVKRAGDVIPYIV 404 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 IV R +P+ P+ CP C + + R A+RC C AQ R++H Sbjct: 405 GPIVARRDGSERPWQMPATCPACGTPLERAEGE------VAYRCPNFGICPAQITRRIEH 458 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 FVSR A +I G+G++Q+ F + ++ AD++TL + N+ G+G Sbjct: 459 FVSRGAMDIAGIGEKQVQLFVER----GWVQDVADLYTL------TPDHFANVEGYGPKR 508 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 V NL +I +N L R I LGIR+VG +A+ LA ++ ++ A Sbjct: 509 VANLLSAIAGSKNRPLHRLIVGLGIRYVGEVVAQILADHFG----------SLDALAAAS 558 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKL 652 + + +G IA ++ ++ P + + L + + + S + + K Sbjct: 559 ADEIDALEGIGPAIAASVAAYFARPESKALIAKLKRAGVRTEAQETARASRGNALAGKTF 618 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GSKLEKAQQLGVKIMNE 711 V TGTL + R +A +T G VS +S+KTD +++G P G+K KAQ+LG+ +++E Sbjct: 619 VITGTLPSMSREEASALITAHGGKVSGSVSKKTDYLVIGAEPGGTKFAKAQELGIPMIDE 678 Query: 712 EQFLFLL 718 L L+ Sbjct: 679 AGLLALI 685 >gi|160875869|ref|YP_001555185.1| DNA ligase, NAD-dependent [Shewanella baltica OS195] gi|190359285|sp|A9L5Z1|DNLJ_SHEB9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|160861391|gb|ABX49925.1| DNA ligase, NAD-dependent [Shewanella baltica OS195] gi|315268060|gb|ADT94913.1| DNA ligase, NAD-dependent [Shewanella baltica OS678] Length = 685 Score = 557 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 246/710 (34%), Positives = 380/710 (53%), Gaps = 51/710 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E ++ E A + + +L Q ++ H+ YY P I DSEYD L +R + +P L + Sbjct: 12 EDVTPENASQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVA- 70 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 + P ++GG ++TH P LSL+ ++ D F R+ + F Sbjct: 71 --DSPTQRVGGLALAKFDQITHLKPMLSLDNAFDEADFSAFHKRVTDKVG-----EVSFC 123 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188 EPK+DG ++I Y G AA RGDG GED++ ++ I +IP L N PE++EVR Sbjct: 124 CEPKLDGLAVSILYRHGVLERAATRGDGSVGEDITENVKTIKSIPLKLRGNDFPELVEVR 183 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE ++ K F ALND A K + NPRNAA+G LR+L+ R L F+ + LG Sbjct: 184 GEAFMPKAAFEALNDRARAKDEKLFVNPRNAAAGSLRQLDSKITAARSLAFYAYALGVVE 243 Query: 248 ---EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 AK +E LQ+++ G P+++ ++ + YY ++ + RS L ++IDG+V Sbjct: 244 PDSHPLAKTHFEQLQQLKSWGLPISSEIKVCAELSQVYDYYKDILTRRSDLAFEIDGVVM 303 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++ + Q++LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV +G Sbjct: 304 KVNDIAQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVG 363 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++NATLHN D I L I+VGD V+++RAG+VIP++V I+ R Sbjct: 364 GVTVSNATLHNADEIARL-----------GIKVGDTVIIRRAGDVIPQIVAIVPERRPET 412 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A FP CP+C S V R A RC+GGL C AQ+ E +KHF SR A +I+ Sbjct: 413 ATDIVFPHNCPVCGSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDID 466 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+G + ++ E ++ PAD+F L + + + G S TNL +I Sbjct: 467 GMGDKVVEQLIDKE----LVQSPADLFKLTA------SMMTMLDRMGMKSATNLAAAIEA 516 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + +L RF+++LGIR VG A +LA ++ S L V V Sbjct: 517 AKTTTLARFLYALGIREVGEATAANLAAHFASLDALRVAT----------VEQLTEVEDV 566 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQR 663 G ++AQ + F+ P N+ ++AL+ + ++ + V TGTL ++ R Sbjct: 567 GAVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSADAQPLKGQTWVLTGTLNQLNR 626 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 + A+ + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK+M+E++ Sbjct: 627 NDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVMDEDE 676 >gi|304411949|ref|ZP_07393560.1| DNA ligase, NAD-dependent [Shewanella baltica OS183] gi|307303283|ref|ZP_07583038.1| DNA ligase, NAD-dependent [Shewanella baltica BA175] gi|304349809|gb|EFM14216.1| DNA ligase, NAD-dependent [Shewanella baltica OS183] gi|306913643|gb|EFN44065.1| DNA ligase, NAD-dependent [Shewanella baltica BA175] Length = 685 Score = 557 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 245/710 (34%), Positives = 377/710 (53%), Gaps = 51/710 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E ++ E A + + +L Q ++ H+ YY P I DSEYD L +R + +P L + Sbjct: 12 EDVTPENASQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVA- 70 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 + P ++GG ++TH P LSL+ ++ D F R+ + F Sbjct: 71 --DSPTQRVGGLALAKFDQITHPKPMLSLDNAFDEADFSAFHKRVTDKVG-----EVSFC 123 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188 EPK+DG ++I Y G AA RGDG GED++ ++ I +IP L N PE++EVR Sbjct: 124 CEPKLDGLAVSILYRHGVLERAATRGDGSVGEDITENVKTIKSIPLKLRGNDFPELVEVR 183 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE ++ K F ALND A K + NPRNAA+G LR+L+ R L F+ + LG Sbjct: 184 GEAFMPKAAFEALNDRARAKDEKLFVNPRNAAAGSLRQLDSKITAARSLAFYAYALGVVE 243 Query: 248 ---EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 AK +E LQ+++ G PV++ ++ + YY ++ + R L ++IDG+V Sbjct: 244 PDSHPLAKTHFEQLQQLKSWGLPVSSEIKVCAELSQVYDYYKDILTRRGDLAFEIDGVVM 303 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++ Q++LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV +G Sbjct: 304 KVNDIDQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVG 363 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++NATLHN D I L I+VGD V+++RAG+VIP++V I+ R Sbjct: 364 GVTVSNATLHNADEIARL-----------GIKVGDTVIIRRAGDVIPQIVAIVPERRPET 412 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A FP CP+C S V R RC+GGL C AQ+ E +KHF SR A +I+ Sbjct: 413 ATDIVFPHNCPVCGSLVERLEGE------VVARCSGGLFCEAQRKEAIKHFASRKALDID 466 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+G + ++ E ++ PAD+F L + + + G S TNL +I Sbjct: 467 GMGDKVVEQLIDKE----LVQSPADLFKLTA------SMMTMLDRMGMKSATNLAAAIEA 516 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + +L RF+++LGIR VG A +LA ++ S L V V Sbjct: 517 AKTTTLARFLYALGIREVGEATAANLAAHFASLDALRVAT----------VEQLTEVEDV 566 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQR 663 G ++AQ + F+ P N+ ++AL+ + ++ + V TGTL ++ R Sbjct: 567 GTVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSAEAQPLKGQTWVLTGTLNQLNR 626 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 + A+ + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK+M+E++ Sbjct: 627 NDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVMDEDE 676 >gi|33594429|ref|NP_882073.1| DNA ligase [Bordetella pertussis Tohama I] gi|81424006|sp|Q7VRX7|DNLJ_BORPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|33564504|emb|CAE43819.1| DNA ligase [Bordetella pertussis Tohama I] gi|332383840|gb|AEE68687.1| DNA ligase [Bordetella pertussis CS] Length = 696 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 257/728 (35%), Positives = 390/728 (53%), Gaps = 69/728 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ ++ L EI H+ YY + P + D+EYDAL R A+ P+L P+ P + Sbjct: 9 QQAIARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELV---TPDSPTQR 65 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----DNSIFFTLEPK 133 +G V H++P LSL ++ ED+R F R+ + D + + E K Sbjct: 66 VGAAPLAEFGSVRHAVPMLSLGNAFDEEDVRAFDKRVADTLRGAGLLGLDQQVEYFCELK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG I++RYE+G+ AA RGDG +GEDV+A IR I +P L ++EVRGEV + Sbjct: 126 LDGLAISLRYEEGRLAQAATRGDGQTGEDVTANIRTIKGVPLRLHGAPR-VLEVRGEVLM 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 ++ +F LN A G K + NPRNAA+G LR+L+P R L FF + G+ + Sbjct: 185 NRAEFERLNRTQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHGLPEG 244 Query: 253 G---------------------QYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKS 290 ML + LG PVN + G++++Y + Sbjct: 245 MPTRFDEPAPGVRVASTLPRDTHGGMLDWLAELGLPVNLRHNHRERGADGLLAFYERIGK 304 Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350 +R+ LPYDIDG+VYKVD Q+ LG AR+PR+ ++HKF ++A T+LL I++Q+GRTG Sbjct: 305 LRADLPYDIDGVVYKVDALPSQRVLGFVARAPRFALAHKFPAEEAVTQLLGIEVQVGRTG 364 Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410 +TPVARL PV +GG +TNATLHNED I+ +D+R+GD V+V+RAG+VI Sbjct: 365 AITPVARLAPVFVGGVTVTNATLHNEDEIRR-----------KDVRIGDTVIVRRAGDVI 413 Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 P+VV ++ +R DA+ F + CPIC S + R + A RCTGGL C+AQ+ + Sbjct: 414 PEVVGPVLEKRPADAREFVMLTACPICGSAIERPESE------AIARCTGGLFCAAQRKQ 467 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530 L H R A +IEGLG++ +D ++ ++ ADI++L ++ + Sbjct: 468 TLLHAAGRKALDIEGLGEKLIDQLVDADR----VKSLADIYSLTA------FELAALERM 517 Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 G S NL +I++ R +L R +F+LGIRHVG AR +A+++ S + Sbjct: 518 GKKSAENLVAAIDQARRPALGRLLFALGIRHVGETTARDVARHFGSMERIMDASE----- 572 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650 +L+ VP VG ++A +I F+ P N VE L ++ E +S + K Sbjct: 573 -----EALLAVPDVGGVVAGSIRRFFAEPHNREIVEQLTQQGVHPQAEAEPEGTS-LAGK 626 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 V TGT+ R +A + G VS +S+KT ++ G++ GSKL KAQ+LGV +++ Sbjct: 627 TFVLTGTMPNWTRDEATRRILAAGGKVSGSVSKKTAYLVTGEDAGSKLTKAQELGVPVLD 686 Query: 711 EEQFLFLL 718 E+ LL Sbjct: 687 EDGLKALL 694 >gi|258510685|ref|YP_003184119.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477411|gb|ACV57730.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 684 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 241/722 (33%), Positives = 369/722 (51%), Gaps = 56/722 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 ALS+E+AR L ++I YH+ YY P I D+E+DAL R + +P+L Sbjct: 8 SALSLEEARARAKVLREQIEYHNRKYYLEDNPEISDAEWDALMRDLIELERKYPELV--- 64 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 DP P ++G KV H +P LSL ++ EDL + R+ + + + + Sbjct: 65 DPASPTQRVGAPALEGFAKVVHEVPMLSLANAYSTEDLLDWDRRVRQAVG----DDVRYV 120 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E K+DG + +RY+ G+ V A RGDG GED++A IR I +P LS + +EVRG Sbjct: 121 CELKVDGLAVALRYQDGRLVLGATRGDGSVGEDITANIRTIRNVPLELSEPVS--LEVRG 178 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248 E Y+ K +F+ LN+ G +ANPRNAA+G LR+L+P +R L V+ L + Sbjct: 179 EAYMPKREFMRLNELREQQGEPLFANPRNAAAGSLRQLDPAVAASRRLGVIVYQLVRAEA 238 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + L + LG P + +++Y R LPY DG+V KVD Sbjct: 239 HGCETHSQALDYVARLGLPAHRERHVCANIEDVIAYIEAWADKRHELPYATDGMVVKVDS 298 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ +LG A+SPRW I++K+A +QA T L I++ +GRTG++TP A +PV + G + Sbjct: 299 LALQARLGATAKSPRWAIAYKYAAEQAETTLRAIELNVGRTGVVTPTAVFDPVQLAGTTV 358 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHNED ++ +DIRVGD ++V++AG++IP+V+ + R F Sbjct: 359 SRASLHNEDLVR-----------EKDIRVGDVIVVQKAGDIIPEVIRSLPERRTEPLPEF 407 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C SR+VR A RC C A E L HF SRDA NIEGLG+ Sbjct: 408 RMPETCPQCGSRLVRLDGE------VAWRCINP-DCPALLREGLIHFCSRDAMNIEGLGE 460 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 Q + +R AD++ L++ + GD L +I + + Sbjct: 461 QWITVLLDR----GLVRTHADLYRLRKADLV------QLDRMGDKLADKLLHNIQESKRN 510 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SLER +F LGIRHVG + A++LA+++++ L+ VP +G + Sbjct: 511 SLERLLFGLGIRHVGEKAAKTLAEHFVTIDALMSASE----------EDLMAVPDIGPKV 560 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 AQ+I +++ PR ++ L +K + K +V TG LQ R +A Sbjct: 561 AQSIRQYFDTPRVRQLIQELKDLGVNMTYLGPQKVSDGPLAGKTVVLTGVLQAADRKQAT 620 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-------GVKIMNEEQFLFLLQQ 720 ++ Q+G V++ +S KTD++I GD GSKL KAQ++ ++I +E FL L+ + Sbjct: 621 AWIEQMGGKVASSVSAKTDVLIAGDKAGSKLAKAQEILRNHPDAKLEIWDEAAFLRLVDE 680 Query: 721 YN 722 Sbjct: 681 AG 682 >gi|192361192|ref|YP_001982383.1| DNA ligase, NAD-dependent [Cellvibrio japonicus Ueda107] gi|254781281|sp|B3PGQ8|DNLJ_CELJU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190687357|gb|ACE85035.1| DNA ligase, NAD-dependent [Cellvibrio japonicus Ueda107] Length = 680 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 243/719 (33%), Positives = 386/719 (53%), Gaps = 47/719 (6%) Query: 9 IEALSI-EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 + LS+ + E++ L ++I YH+ YY +P I D+EYD L +R + +P Sbjct: 1 MSNLSLFDDVSAEIAQLREQIRYHNYRYYALDEPQIPDAEYDRLMQRLRELEAQYP---A 57 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 S P+ P ++G + V H IP LSL+ + D+ F RI + ++ I Sbjct: 58 SVTPDSPTQRVGAAPLSAFQTVEHQIPMLSLDNAFEEADVIAFNQRILDRLKSTEN--IE 115 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 + E K+DG +++ Y G V A RGDG GED++ +R I ++P L P ++E Sbjct: 116 YACELKLDGLAVSLLYRDGVLVRGATRGDGSKGEDITQNLRTIASVPLKLLGEGYPAVLE 175 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245 VRGEVY+ K F ALN++ + G K + NPRNAA+G LR+L+ +R L + +G Sbjct: 176 VRGEVYMPKAGFNALNEKARSTGEKLFVNPRNAAAGALRQLDSRITASRPLEMCAYSVGL 235 Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 +L ++ GF N A+T +++Y +++ R +L YDIDG+V+ Sbjct: 236 VEGGELPGTHTGILAALKSWGFLTNKETATASTIADCIAFYQSIQARRDSLAYDIDGIVF 295 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ LQ+ LG +R+PRW I++KF ++ T L D++ Q+GRTG +TPVARL+PV +G Sbjct: 296 KVNARELQESLGFISRAPRWAIAYKFPAQEEMTVLQDVEFQVGRTGAVTPVARLQPVFVG 355 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++NATLHN D I+ L I +GD V+V+RAG+VIP++V ++ + R D Sbjct: 356 GVTVSNATLHNRDEIQRL-----------GIMIGDTVIVRRAGDVIPQIVQVVESRRPTD 404 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+P FP CP+C S V + A RC+GGL C+AQ+ E +KHF SR A ++E Sbjct: 405 ARPVLFPDHCPVCGSPVETLEDE------AIARCSGGLVCAAQRKEAIKHFASRKALDVE 458 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG + ++ + + ADI+ L Q + G+ S NL ++ Sbjct: 459 GLGDKLVEQLVDT----GLVSKLADIYQLTGEQLAAM------ERMGEKSADNLLQALEA 508 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 ++ +L +FI++LGIR +G AR+LA ++ S + A+ D +L++V V Sbjct: 509 SKHTTLAKFIYALGIREIGEATARNLANHFGSLEKLAEA----------DEETLVQVNDV 558 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQR 663 G + A + EF+ N AV L + ++ V TGTL+ + R Sbjct: 559 GPVGAHFVAEFFAQESNRQAVADLRAAGIHWQDLDVSTIEDLPLKGLTYVLTGTLEVMSR 618 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A+ ++ LGA V+ +S KTD ++ G GSKL+KA++L + +M+EE L LL+++ Sbjct: 619 DDAKAHLLALGAKVAGSVSAKTDYVVAGPGAGSKLQKARELNLNVMDEEALLDLLRKHG 677 >gi|297717812|gb|ADI50049.1| DNA ligase [Candidatus Odyssella thessalonicensis L13] Length = 676 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 273/698 (39%), Positives = 410/698 (58%), Gaps = 26/698 (3%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L + I+YHD+ Y+Q P I D+ YDAL R I + FPDL R + P ++G ++ Sbjct: 1 LAKTIAYHDELYFQKDMPQISDAAYDALVVRNRQIENLFPDLRRE---DSPSKRVGAPVS 57 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 KV H IP LSLE + +D+ F R+ RF D EPKIDG + Y Sbjct: 58 KGFKKVKHRIPMLSLENAFTSDDVINFFERVRRFLSLPSDQEFPIVAEPKIDGLSAALHY 117 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDFLALN 202 ++GK AA RGDG GED++ +R I +P+ L PE +EVRGE+Y++++DF ALN Sbjct: 118 QRGKLRLAATRGDGSEGEDITENVRCIIDVPQTLIGKNVPESLEVRGEIYMNRSDFFALN 177 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 + +ANPRNAA+G +R+L+PT R L FF + S +E L+ + Sbjct: 178 QQRQQESEPEFANPRNAAAGSVRQLDPTVTARRPLRFFAYYYDAISGDTTMTHHEALENL 237 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 R GF VN ++ + + YYN + + R+ LPYDIDG+VYK+D Q++LG R+ Sbjct: 238 RRWGFTVNPEIQLCLSIAQLQDYYNSINARRADLPYDIDGVVYKIDALQWQRRLGSVGRT 297 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PR+ ++HKF ++A T L DI IQ+GRTG+LTPVA L+PV +GG +++ ATLHN D I Sbjct: 298 PRYALAHKFEAEKAETILEDIAIQVGRTGVLTPVAHLKPVTVGGVVVSRATLHNADEIAR 357 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +D+RVGD V+++RAG+VIP++V ++ +R P++Q F FP+ CP C + Sbjct: 358 -----------KDVRVGDHVIIQRAGDVIPQIVSVVKEKRLPESQSFDFPATCPACGGEI 406 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 V A RC L C AQ +ERLKHFVSRDAF+IEGLG + ++ F++ Sbjct: 407 VYVPGE------VARRCMNRLLCPAQAVERLKHFVSRDAFDIEGLGNRNIEAFYEE---- 456 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 I P DIFTL R + S T + G+G S NL+++I RR I+L+RFI++LGI Sbjct: 457 GLIHSPVDIFTLAARDRESLTPLRAKEGWGSQSAANLFEAIENRRTITLDRFIYALGIPQ 516 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 VG+ A+ LA++Y + N + D ++ L+ + +G +A+ I+ F+ N Sbjct: 517 VGSVTAKLLARHYHTLPNLLNTLQQAQDPTTDAYVDLLSLDGIGKNMAEDILSFFHEAHN 576 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 + ++AL E+S E + +S + K +VFTGTL ++ R +A+ +LGA V+ + Sbjct: 577 LKVIDALSHELSIPAYALEMSTTSAVSGKTVVFTGTLTRMSRAEAKATAERLGAKVAGSV 636 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 S+KTD++IVG + GSK A +LGV++++E Q++ L+ Sbjct: 637 SKKTDLVIVGADAGSKARAAAELGVQVLDENQWMALIA 674 >gi|89097084|ref|ZP_01169975.1| DNA ligase [Bacillus sp. NRRL B-14911] gi|89088464|gb|EAR67574.1| DNA ligase [Bacillus sp. NRRL B-14911] Length = 668 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 249/714 (34%), Positives = 378/714 (52%), Gaps = 53/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + ++ A + L ++ + YY KP + DSEYD L + + + P L + Sbjct: 1 MDLQNAEARVKELHNLLNQYGYEYYVLDKPSVPDSEYDRLLKELMELENEHPQLKTA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GGE+ KV H P LSL +N EDLR F R+ + ++ + E Sbjct: 58 DSPTQRVGGEILDMFEKVEHQTPMLSLGNAFNEEDLRSFDRRVR----QTAGENLSYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG + ++YE G F+ A RGDG GED++ +R I +IP LS + IEVRGE Sbjct: 114 LKIDGLAVALKYEDGLFIQGATRGDGTIGEDITVNLRTIRSIPLRLSEPVS--IEVRGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 ++ F ALN G +P+ANPRNAA+G LR+L+P +R L+ F++G+ T + Sbjct: 172 FMPGRSFEALNKGKEERGEEPFANPRNAAAGSLRQLDPRIAASRNLDIFLYGISNTGDTG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + L + LGF N R+ + ++ Y + R L YDIDG+V KVD + Sbjct: 232 VESHSAGLDYLETLGFKTNKERRKCASIEEVIEYVSSWTEKRPNLDYDIDGIVIKVDSLA 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG A+SPRW I++KF ++ T L DI++ +GRTG++TP A LEPV + G + Sbjct: 292 LQEELGATAKSPRWAIAYKFPAEEVVTTLRDIELSVGRTGVVTPTALLEPVRVAGTTVQR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DI++GD+V+VK+AG++IP+VV+++ +R + + F Sbjct: 352 ASLHNEDLIR-----------EKDIKIGDKVVVKKAGDIIPEVVNVLAEQRTGEEREFIM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 PTHCPECGSELVRLEGE------VALRCINPK-CPAQIREGLIHFVSRNAMNIDGLGEKV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F E I+ AD++ L G+ SV NL +I + SL Sbjct: 454 VSQLFAKE----LIKDVADLYKLTHEALIGM------ERMGEKSVNNLVQAIEASKQNSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E+ +F LGIRHVGA+ A++LA+++ S N L + +G +A Sbjct: 504 EKLLFGLGIRHVGAKAAKTLAQHFSSMDNLMAASE----------DDLTAINEIGGKMAG 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 AIV F++ + L + + ++ S K +V TG L + R++ Sbjct: 554 AIVAFFEQEEAKELIRELKESGVNMEYKGPKPVAAEDSDSFFAGKTIVLTGKLSILSRNE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + LG VS +S+KTD++I G++ GSKL KAQ LG+ I NEEQ + L Sbjct: 614 AKEKIEALGGNVSGSVSKKTDLLIAGEDAGSKLAKAQDLGIDIWNEEQLVEELN 667 >gi|153001196|ref|YP_001366877.1| DNA ligase, NAD-dependent [Shewanella baltica OS185] gi|166216241|sp|A6WPS5|DNLJ_SHEB8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|151365814|gb|ABS08814.1| DNA ligase, NAD-dependent [Shewanella baltica OS185] Length = 685 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 246/710 (34%), Positives = 379/710 (53%), Gaps = 51/710 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E ++ E A + + +L Q ++ H+ YY P I DSEYD L +R + +P L + Sbjct: 12 EDVTPENASQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVA- 70 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 + P ++GG ++TH P LSL+ ++ D F R+ + F Sbjct: 71 --DSPTQRVGGLALAKFDQITHLKPMLSLDNAFDEADFSAFHKRVTDKVG-----EVSFC 123 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188 EPK+DG ++I Y G AA RGDG GED++ ++ I +IP L N PE++EVR Sbjct: 124 CEPKLDGLAVSILYRHGVLERAATRGDGSVGEDITENVKTIKSIPLKLRGNDFPELVEVR 183 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE ++ K F ALND A K + NPRNAA+G LR+L+ R L F+ + LG Sbjct: 184 GEAFMPKAAFEALNDRARAKDEKLFVNPRNAAAGSLRQLDSKITAARSLAFYAYALGVVE 243 Query: 248 ---EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 AK +E LQ+++ G P+++ ++ + YY + + RS L ++IDG+V Sbjct: 244 PDSHPLAKTHFEQLQQLKSWGLPISSEIKVCAELSQVYDYYKNILTRRSDLAFEIDGVVM 303 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++ + Q++LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV +G Sbjct: 304 KVNDIAQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVG 363 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++NATLHN D I L I+VGD V+++RAG+VIP++V I+ R Sbjct: 364 GVTVSNATLHNADEIARL-----------GIKVGDTVIIRRAGDVIPQIVAIVPERRPET 412 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A FP CP+C S V R A RC+GGL C AQ+ E +KHF SR A +I+ Sbjct: 413 ATDIVFPHNCPVCGSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDID 466 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+G + ++ E ++ PAD+F L + + + G S TNL +I Sbjct: 467 GMGDKVVEQLIDKE----LVQSPADLFKLTA------SMMTMLDRMGMKSATNLAAAIEA 516 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + +L RF+++LGIR VG A +LA ++ S L V V Sbjct: 517 AKTTTLARFLYALGIREVGEATAANLAAHFASLDALRVAT----------VEQLTEVEDV 566 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQR 663 G ++AQ + F+ P N+ ++AL+ + ++ + V TGTL ++ R Sbjct: 567 GAVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSADAQPLKGQTWVLTGTLNQLNR 626 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 + A+ + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK+M+E++ Sbjct: 627 NDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVMDEDE 676 >gi|169831769|ref|YP_001717751.1| NAD-dependent DNA ligase [Candidatus Desulforudis audaxviator MP104C] gi|254781311|sp|B1I551|DNLJ_DESAP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169638613|gb|ACA60119.1| DNA ligase, NAD-dependent [Candidatus Desulforudis audaxviator MP104C] Length = 672 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 250/710 (35%), Positives = 361/710 (50%), Gaps = 47/710 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E+AR L +EI YHD YY P+I D+EYD L R A+ A+P+L P Sbjct: 1 MKPEEARARAEELRREIEYHDHRYYVLDDPVIEDAEYDRLVRELVALETAYPELV---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG V H P LSL +N DL F R+ D + + +E Sbjct: 58 DSPTQRVGGRPREGFVTVQHRAPMLSLANAFNAADLADFDRRVRTGL---ADEDVDYVVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190 K DG +++ YE G+ V A RGDG +GE+++ +R I +IP L P +IEVRGE Sbjct: 115 LKFDGVAVSLTYEHGRLVRGATRGDGVTGEEITPNLRTIRSIPLRLRQPGAPNVIEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249 VY+ K F LN+ G +ANPRNAA+G LR+L+P R L+ +++G+G T I Sbjct: 175 VYMPKEAFARLNERREDAGLPLFANPRNAAAGSLRQLDPGITAERKLDIWLYGIGYTDGI 234 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + GF VN R +T + + + R LPY IDGLV KVD Sbjct: 235 VFGRHSEALAWLGEQGFRVNPHTRIFSTLEEVERHLEHWREARFELPYVIDGLVLKVDRL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q++LG +SPRW +++K+ +QA T + DI I++GRTG+LTP A L PV + G ++ Sbjct: 295 DQQERLGTTLKSPRWAVAYKYPPEQAETTVEDIIIRVGRTGVLTPTAVLSPVRLAGTTVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD VL+ +AG++IP+++ +R PF+ Sbjct: 355 RASLHNEDLIR-----------EKDIRIGDVVLIHKAGDIIPEILGSRPEKRTGRETPFA 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C S +VR +AC A+ L HFVSR+AF I GLG Sbjct: 404 MPVQCPECASLLVRPEGEVG-------VYCSNVACPARLERSLLHFVSRNAFAINGLGPA 456 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + + + PAD+FTL R + + G S NL +I + S Sbjct: 457 VIQQLLERR----LVADPADLFTLTREELVG------LERIGPKSADNLLKAIQNSKRNS 506 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R IFSLGIRHVG AR LA+ + S L VP +G IA Sbjct: 507 LARLIFSLGIRHVGERAARLLAERFGSLAGLMAAGR----------EELEAVPEIGPKIA 556 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQE 668 +++ F+ +N V L++ ++ + K V TGTL++ R +A Sbjct: 557 DSVLNFFAREQNRRVVAKLVRAGVNTVADRPAAAGTGPLAGKTFVLTGTLEEFSRAEAAA 616 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LG V + +SR+TD +++G NPG K +KA +LGV I+ E +F LL Sbjct: 617 RIEELGGRVVSNVSRRTDYVVLGKNPGGKYDKAVKLGVNIIEEPEFKRLL 666 >gi|311104688|ref|YP_003977541.1| DNA ligase, NAD-dependent [Achromobacter xylosoxidans A8] gi|310759377|gb|ADP14826.1| DNA ligase, NAD-dependent [Achromobacter xylosoxidans A8] Length = 702 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 258/723 (35%), Positives = 385/723 (53%), Gaps = 68/723 (9%) Query: 27 EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86 EI H+ YY Y +P I D+EYD L R A+ P+L P P ++G + Sbjct: 20 EIEQHNVRYYVYDEPSISDAEYDGLMRELQALEAEHPELV---TPESPTQRVGAAPVSAF 76 Query: 87 FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ----KKDDNSIFFTLEPKIDGTMITIR 142 V H +P LSL ++ ED+ F R+ + + E K+DG I++R Sbjct: 77 GSVRHVVPMLSLGNAFDEEDVAAFDRRVTDTLRGAGLLGPAQQADYFCELKLDGLAISLR 136 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 YE G+ V AA RGDG +GEDV++ IR I IP L P+++EVRGEV +++ DF LN Sbjct: 137 YEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLKGTFPKVLEVRGEVLMNRADFEKLN 196 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-------------- 247 K + NPRNAA+G LR+L+P R L FF +G G+ Sbjct: 197 QAQAKRDEKVFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGEVQGLAGTQGGLFAEAS 256 Query: 248 -------EIFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 ++ K ML + LG P +A+ G++++Y ++ +R LPYDI Sbjct: 257 AGAAEASQLPEKSHGAMLDWLASLGLPVNVKHNHRASGAEGLMAFYAKVGKLRPELPYDI 316 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD QK LG AR+PR+ ++HKFA ++A+T LLDI++Q+GRTG +TPVARL+ Sbjct: 317 DGVVYKVDSLPAQKVLGFVARAPRFALAHKFAAEEATTTLLDIEVQVGRTGAITPVARLK 376 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG +TNATLHNED I+ +D+R+GD V+V+RAG+VIP+V+ ++ Sbjct: 377 PVFVGGVTVTNATLHNEDEIRR-----------KDVRIGDTVIVRRAGDVIPEVLGPVLE 425 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R DA+ F P+ CPIC S + R + RCTGGL C AQ+ + L H SR Sbjct: 426 KRPDDAREFVMPTACPICGSAIERLEDET------IARCTGGLFCGAQRKQTLWHAASRK 479 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG++ +D S ++ AD+++L+ ++ + G S NL Sbjct: 480 ALDIEGLGEKLVDQLVDS----GRVKTLADLYSLR------PLELVGLDRMGQKSADNLV 529 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I+K R +L R +++LGIRHVG AR +A+++ S D +L Sbjct: 530 AAIDKARAPALNRLLYALGIRHVGETTARDVARHFGSIDAIMDA----------DEDALS 579 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 VP VG ++A +I F+ N +E L + + ++ + K V TGTL Sbjct: 580 SVPDVGPVVAASIRRFFAEQHNRDVIEQLKAQGVNPVAE-AAPQATTLAGKTFVLTGTLP 638 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +A + G VS +S+KT ++ G++ GSKL KAQ+LGV +++E+ LL Sbjct: 639 NWTREEASMRIQAAGGKVSGSVSKKTAYLVAGEDSGSKLAKAQELGVTVLDEDGLKTLLG 698 Query: 720 QYN 722 + Sbjct: 699 EQG 701 >gi|86138407|ref|ZP_01056981.1| DNA ligase, NAD-dependent [Roseobacter sp. MED193] gi|85824932|gb|EAQ45133.1| DNA ligase, NAD-dependent [Roseobacter sp. MED193] Length = 752 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 299/764 (39%), Positives = 440/764 (57%), Gaps = 59/764 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 MK+ + + LS EQA+ E L+ +++ D Y+Q P + D+ YDA KRR +A Sbjct: 1 MKQIEPLDPSGLSQEQAQAEFLELQTQLAAADQAYHQNDAPFLSDAAYDAAKRRYKVLAE 60 Query: 61 AFPDLARSEDP-NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119 AFP+L + +G + K+ H +P LSL + D+ F I + Sbjct: 61 AFPELKDIATQLDS----VGAPVTSGFGKIQHVVPMLSLGNAFEDSDVADFDRSIRNYLG 116 Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179 + FT EPKIDG +++RYEKG + AA RGDG +GE+V+A R I IP+ LS Sbjct: 117 FGASQPLRFTAEPKIDGLSLSLRYEKGVLIQAATRGDGATGENVTANARTIADIPQQLSG 176 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238 PE++EVRGEVY+S DF ALN G K +ANPRNAA+G LR+L+ R L F Sbjct: 177 A-PEVLEVRGEVYMSHEDFAALNARHTERGGKTFANPRNAAAGSLRQLDAEITRLRPLRF 235 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 F + G S A+ Q ++++ LGF N + + ++++Y ++++ R+TL YD Sbjct: 236 FAYSWGDLSAPLAQTQTGAIERLHELGFQTNPLTQTCASVAEMIAHYRQIEAQRATLGYD 295 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKVD+ +LQ +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL Sbjct: 296 IDGVVYKVDDLALQGRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARL 355 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 PV +GG +++NATLHNEDYI+G D G+ +RGG++IR+GD V V RAG+VIPKV D+ + Sbjct: 356 TPVTVGGVVVSNATLHNEDYIRGRDNKGEEIRGGKEIRIGDWVQVYRAGDVIPKVADVDL 415 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 +R+ D Q F FP CP C S VR+ A RCTGG+ C AQ +E+LKHFVSR Sbjct: 416 TKRNGDEQTFDFPETCPECGSPAVREEG------DAVRRCTGGIICPAQAIEKLKHFVSR 469 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 AF+IEGLG +QL+ F+ DP IR P DI+TL++R TK++N G+GD S NL Sbjct: 470 KAFDIEGLGAKQLEMFYN--DPDLPIRTPVDIYTLEQRDLGQFTKLKNRPGWGDQSAANL 527 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH-------- 590 + +I ++RNISL R IF+LGIRHVG A+ LA ++ S+++ A ++ + Sbjct: 528 FAAITEKRNISLGRMIFALGIRHVGEVAAKDLALHFGSWEDLASAVDAARSAALAHRAAD 587 Query: 591 -----------------------------------NNDDWLSLIRVPLVGDIIAQAIVEF 615 + W LI + +G + ++ + Sbjct: 588 LAEDQERERASSEGRRAKIKETREAALSVLELHRTAREAWEDLIGIDGIGATVGLSLSDA 647 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 N + ++ L+ +++ S + S + +VFTG L+K+ R +A+ LGA Sbjct: 648 LANMQERAVIDDLVAQLNIS-APAAPSQESPVAGLTVVFTGKLEKMTRDEAKARAESLGA 706 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 VS +S+KTDI++ G GSK +KA +LG++I++E+ +L + Sbjct: 707 KVSGSVSKKTDILVAGPGAGSKEKKALELGIRILDEDGWLAEIA 750 >gi|149192011|ref|ZP_01870239.1| NAD-dependent DNA ligase LigA [Vibrio shilonii AK1] gi|148834147|gb|EDL51156.1| NAD-dependent DNA ligase LigA [Vibrio shilonii AK1] Length = 667 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 253/706 (35%), Positives = 392/706 (55%), Gaps = 47/706 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ L+ L++++ YH YY P I D EYD L + AI PD + P + Sbjct: 3 QQRLNELKEQLHYHGVKYYVEDSPEIPDVEYDRLMQELLAIEAEHPDWVTV---DSPSQR 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG S +V H IP LSL+ ++ EDL F RI + D + + E K+DG Sbjct: 60 VGGLPLDSFTQVKHEIPMLSLDNAFSDEDLDSFNKRICDRVNRTDIGA--YCCEVKLDGL 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKN 196 +++ YE G V AA RGDG +GE+++ +R I IP L + P IEVRGEV++ K Sbjct: 118 AVSLLYESGVLVQAATRGDGTTGENITENVRTISAIPLKLQGDDIPARIEVRGEVFMPKA 177 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS-EIFAKGQ 254 F LN+ G K + NPRNAA+G LR+L+ TR L+F+ + LG Sbjct: 178 GFAKLNELAERKGEKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSLGIVEGTELPASH 237 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 ++ K++ LGFP+ ++ N+ + +Y+ ++ R L Y+IDG+V KVD+ +LQ+Q Sbjct: 238 FDRFLKLKSLGFPMGPETKRVNSIEEVKAYHKAIQEKRDELEYEIDGVVIKVDDIALQEQ 297 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG AR+PRW I++KF ++ T L ++ Q+GRTG +TPVA+LEPV +GG ++NATLH Sbjct: 298 LGFVARAPRWAIAYKFPAQEEITVLNSVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLH 357 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L ++VGD V+++RAG+VIP++V + R DA+ FPS C Sbjct: 358 NADEIERL-----------GVKVGDSVIIRRAGDVIPQIVSYVPERRPADAKEIVFPSEC 406 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S + R A RCTGGL C AQ+ E LKHFVSR A +++GLG++ ++ Sbjct: 407 PVCASLIERIEGE------AVARCTGGLVCQAQRKEALKHFVSRKALDVDGLGEKVIEQL 460 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 E + PAD+F L S ++ + G S N+ +++N + +L RF+ Sbjct: 461 VDKE----MVETPADLFKL------SVGQLTILERMGPKSAQNVVNALNVSKETTLARFL 510 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +SLGIR VG A +L+ ++ + +N + LI VP VG+I+A+ I Sbjct: 511 YSLGIREVGEATAANLSTHFETLENVMNATH----------DQLIEVPDVGEIVAKHIRF 560 Query: 615 FYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F+ N +EAL+ ++ ++ + K +V TG+L ++ R+ A+ + Sbjct: 561 FFAAESNQKVIEALIAAGIHWAAVEAPAEDTPQPLAGKTVVLTGSLSQLNRNDAKAALQA 620 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 LGA V+ +S+KTDI+ G+N GSKL KAQ+L ++I E+ + L+ Sbjct: 621 LGAKVTGSVSKKTDILFAGENAGSKLAKAQELNIEIRTEDDLIELI 666 >gi|77919807|ref|YP_357622.1| DNA ligase, NAD-dependent [Pelobacter carbinolicus DSM 2380] gi|123756590|sp|Q3A2F5|DNLJ_PELCD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|77545890|gb|ABA89452.1| DNA ligase, NAD-dependent [Pelobacter carbinolicus DSM 2380] Length = 671 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 243/710 (34%), Positives = 369/710 (51%), Gaps = 46/710 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + Q + L E+ H YY Y +P I D+EYD L R + A+P+L + Sbjct: 1 MDKAQRIRRYQQLCDELHRHSRLYYTYDRPEITDAEYDRLFRELLELEKAYPELVTAA-- 58 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P ++G V HS P LSLE ++L F RI + D + + E Sbjct: 59 -SPSLRVGASPLSQFTPVPHSRPMLSLENALTEDELYDFDARIRKLL--ASDAPVRYVCE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG + + Y G + RGDG +GE ++ +R IP+IP VLS P ++EVRGEV Sbjct: 116 LKMDGVAVELVYRDGILSVGSTRGDGTTGEGITENLRTIPSIPLVLSGEAPALLEVRGEV 175 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 YI +DF LN E G + +ANPRNAA+G LR+L+ R L F +G+G+ S Sbjct: 176 YIDLDDFQKLNHEREEEGLQVFANPRNAAAGSLRQLDSAVTAKRPLKIFCYGIGQLSGEH 235 Query: 251 AKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + +L+ M G VN R + Y+ +++ R LPY+IDG+V KVD+ Sbjct: 236 PASHHSLLKCMHRWGLRVNLEHSRTLEGIEQVTDYFRQLQQRRDELPYEIDGMVVKVDDL 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LGE+ R+PRW I+ KF +QA T + DI +Q+GRTG +TPVA+L+PV + G ++ Sbjct: 296 ALQRELGEKTRTPRWAIACKFPPRQAVTVVEDIVLQVGRTGAITPVAQLKPVEVSGVTVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN D I L D+ +GD V+V+RAG+VIP VV ++ R+ + Sbjct: 356 RASLHNWDEIARL-----------DVLIGDTVVVERAGDVIPDVVKVLTEHRNGQERSVP 404 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C VV+ RC ++C A+ E +KHFV+R A +I+GLG++ Sbjct: 405 LPQSCPACGGPVVKLEGE------VVPRC-QEMSCPARLRESIKHFVARRAMDIDGLGER 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ K E I+ AD++ L + D S L +I + Sbjct: 458 TIEQLLKRE----LIKSVADLYHLTKEDLLLC------ERLADKSAEKLLTAIAASKTRP 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RF+F+LGIRHVG +A LA+ + S + L+ + +G +A Sbjct: 508 LGRFLFALGIRHVGEHLASLLARQFGSLDALSHATR----------EELLAIHEIGPQVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++ +F+ RN + AL + + EK + K VFTG+L + R +AQE Sbjct: 558 DSVTDFFAKSRNREILAALQRAGV-APQAEEKRSGGPLTGKSFVFTGSLTRFSRKQAQEM 616 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V +LG S +S+KTD ++ G+ GSKLEKA+QL ++I++EE+FL ++ Sbjct: 617 VERLGGRASGSVSKKTDCVVAGEAAGSKLEKARQLNIQILSEEEFLQMID 666 >gi|119898292|ref|YP_933505.1| DNA ligase (NAD+) [Azoarcus sp. BH72] gi|166215393|sp|A1K713|DNLJ_AZOSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|119670705|emb|CAL94618.1| DNA ligase (NAD+) [Azoarcus sp. BH72] Length = 693 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 266/713 (37%), Positives = 386/713 (54%), Gaps = 49/713 (6%) Query: 27 EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86 EI+ H+ YY P I D+EYD L R I A P+L P+ P ++GG L Sbjct: 17 EIARHNHAYYVLDTPTIPDAEYDRLFRELQDIEAAHPELL---TPDSPTQRVGGAPLPEL 73 Query: 87 FKVTHSIPTLSLEKIWNI--EDLRKFITRIYRFWQKKDDNS-IFFTLEPKIDGTMITIRY 143 V H++P LS+ + + +R F TR+ D + + + E K DG I++RY Sbjct: 74 VPVRHAVPMLSIRTETDTTAQGVRNFDTRVRNALGLGDGDPAVEYLSELKFDGLAISLRY 133 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 E G V AA RGDG +GEDV+ +R I IP L P +IEVRGE+Y+ ++DF ALN+ Sbjct: 134 EHGVLVRAATRGDGETGEDVTHNVRTIQQIPLRLHGAAPAVIEVRGEIYMRRDDFEALNN 193 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLG-KTSEIFAKGQYEMLQKM 261 G K + NPRNAA+G +R+L+P R +FF +GLG Q E+L ++ Sbjct: 194 RQREAGDKVFVNPRNAAAGAVRQLDPRIAARRPLSFFAYGLGEHAGFDLPATQAELLTRL 253 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 G PV ++ G++++++ + ++R+ LPYDIDG+VYKV+ LQ++LG R Sbjct: 254 AAFGVPVCEHREVSSGPEGLIAFHDRIAALRNELPYDIDGVVYKVNRVDLQRELGFVTRE 313 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW ++HK+ ++ TRL ID+Q+GRTG LTPVARLEPV +GG +TNATLHN+D I Sbjct: 314 PRWAVAHKYPAQEEITRLAGIDVQVGRTGALTPVARLEPVFVGGVTVTNATLHNQDEIDR 373 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS---FPSFCPICQ 438 +D+RVGD V+V+RAG+VIP+VV ++ R + F+ CP+C Sbjct: 374 -----------KDVRVGDWVIVRRAGDVIPEVVGPVLERRVGEPPRFNLLASYPTCPVCG 422 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S VVR + A RC+GGL C AQ+ + L HF R A +IEGLG + ++ Sbjct: 423 SHVVRGEDE------AVARCSGGLFCPAQRKQALLHFAGRRAMDIEGLGDKLVEQLVD-- 474 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A ++ PAD++ L + N+ G+ S NL +I K RN +L RFIF+LG Sbjct: 475 --ASIVKTPADLYKL------GILALANLERMGEKSAQNLLAAIEKSRNTTLARFIFALG 526 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IR+VG A+ LA+++ S D +L +VP VG ++A+ I EF+ Sbjct: 527 IRNVGEATAKDLARHFGSLDALLAA----------DEGALQQVPDVGPVVAKCIAEFFAE 576 Query: 619 PRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 N+ VE L G S + V TGTL + R +A+ + G V Sbjct: 577 AHNVEVVEQLRAAGLRWEEGAPAAPASGSVAGLTFVITGTLPTLSRDEAKALIEAHGGKV 636 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDD 730 S +S+KTD ++ G GSKL KAQ LGV I++E+ LL+ + + D Sbjct: 637 SGSVSKKTDYLVAGAEAGSKLAKAQDLGVDIVDEDGLRRLLESGEQSPINNKD 689 >gi|237747723|ref|ZP_04578203.1| DNA ligase [Oxalobacter formigenes OXCC13] gi|229379085|gb|EEO29176.1| DNA ligase [Oxalobacter formigenes OXCC13] Length = 685 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 266/713 (37%), Positives = 396/713 (55%), Gaps = 49/713 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + L EI ++ YY PI+ DSEYD L R+ + A P+L P+ P + Sbjct: 16 AEQAARLRSEIERYNIAYYVLDAPIVPDSEYDRLFRQLQELEKAHPELVV---PDSPTQR 72 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG KV H IP LSL+ + E++ F RI D ++ + E K DG Sbjct: 73 VGGLPLAQFEKVEHKIPMLSLQNGLSEEEVAAFDKRISDEL---DGENVEYEAELKFDGL 129 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196 + +RYE G V AA RGDG SGE+++ I+ + TIP LS PE++EVRGEV + K Sbjct: 130 AVNLRYENGLLVQAATRGDGTSGENITNNIKTVRTIPLRLSDLAPPEVLEVRGEVLMFKK 189 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS-EIFAKGQ 254 DF LN +K + NPRNAA+G LR+L+ TR L FF +GLG+ + Q Sbjct: 190 DFHDLNRRQRENEQKEFVNPRNAAAGSLRQLDSQITATRQLRFFAYGLGELKGSPLPRSQ 249 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L LG PV + + F G++ ++N ++ R +LPY+IDG+VYKV+ + Q++ Sbjct: 250 SALLDWFVQLGIPVCDERKVVKGFKGLMGFFNRIEEKRESLPYEIDGVVYKVNSIAEQQK 309 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PR+ I+HKF ++ T +LDID+Q+GRTG +TPVARL+PV +GG +TNATLH Sbjct: 310 LGFISRAPRFAIAHKFPAQEVLTEVLDIDVQVGRTGAITPVARLKPVFVGGVTVTNATLH 369 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED ++ +D+R+GD V+V+RAG+VIP+V+ ++ R DA+ F P+ C Sbjct: 370 NEDEVRR-----------KDVRIGDTVIVRRAGDVIPEVLAVVPERRQADAREFVMPTVC 418 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P+C S ++R + A RC+G + C AQ+ L FVSR A IEGLG+Q +D Sbjct: 419 PVCGSPIIRPEDE------AIARCSGGWIKCPAQKKGGLLLFVSRKALGIEGLGEQLIDQ 472 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 I AD++TL + + + S +NL + K + + RF Sbjct: 473 LVDKN----VINDAADLYTLDLE------TLSQLDRMAEKSASNLLGELEKSKKTTFARF 522 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +++LGIRHVG AR+LA Y+ + N Q L+ V +G I+A +I Sbjct: 523 LYALGIRHVGEATARALAGYFGNLANLRQASE----------EQLLEVADIGPIVAASIK 572 Query: 614 EFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 +F+ + RN+ V+ LL P EK +NKK V TGTL + R A E + Sbjct: 573 QFFSDERNLALVDKLLGVGLHWPEHEMKEKPEELPFQNKKFVLTGTLPSLTRDAAAEIIR 632 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 LG VS+ +SR TD ++ G PGSKL KA++LGV++++E +FL L++ + Sbjct: 633 NLGGKVSSSVSRNTDYVLAGSEPGSKLAKAEELGVRVIDENEFLQLVKNDKSN 685 >gi|169825829|ref|YP_001695987.1| DNA ligase [Lysinibacillus sphaericus C3-41] gi|254781361|sp|B1HTW6|DNLJ_LYSSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|168990317|gb|ACA37857.1| DNA ligase [Lysinibacillus sphaericus C3-41] Length = 667 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 235/712 (33%), Positives = 376/712 (52%), Gaps = 53/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + + ++ L + + + YY KP++ DS YD L A+ A P L P+ Sbjct: 1 MNEIEQRIAELNKLLHEYGYAYYVLDKPVVADSVYDQLLHELIALEEANPSLIF---PDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + KVTH P LSL +N DL++F ++ + + + E K Sbjct: 58 PTQRVGGTVVEGFKKVTHDYPMLSLSNAFNEADLQEFDRKVRQAIG----DHFSYVCELK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I+++YE G FV A RGDG GE+++A ++ I IP L I IEVRGE Y+ Sbjct: 114 IDGLAISLKYENGVFVQGATRGDGVVGEEITANLKTIHAIPLRLKEPI--TIEVRGEAYM 171 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFA 251 K F LN + G + +ANPRNAA+G LR+L+P + F G Sbjct: 172 PKKSFEKLNAQRADNGEELFANPRNAAAGSLRQLDPKIAASRQLSTFIYAIGGDGEIYGI 231 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 G EML + LGFP N ++ +T ++++ R L Y+IDG+V KVD ++ Sbjct: 232 DGHAEMLDYLEDLGFPSNKERQRCSTIEEVMAFIEHWTENRPHLAYEIDGIVIKVDRYAQ 291 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG A+SPRW I++KF ++ T LLDID+ +GRTG++TP A L PV + G + A Sbjct: 292 QDELGYTAKSPRWAIAYKFPAEEVVTTLLDIDLTVGRTGVVTPTAILTPVQVAGTTVQRA 351 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHNED I+ +DIR+GD V++++AG++IP+VV +++ +R ++ PF P Sbjct: 352 SLHNEDLIR-----------DKDIRLGDTVIIRKAGDIIPQVVGVLIEQRPENSVPFEMP 400 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C S ++R A RC AC AQ E +K+FVSR+A NI+GLG + + Sbjct: 401 KNCPVCDSELIRIEGE------VALRCVNP-ACFAQIAESIKYFVSRNAMNIDGLGDKVV 453 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + + A I +D++ L Q + G+ S TNL ++I + S+E Sbjct: 454 EQLLR----ADLIHDVSDLYHLTIEQLV------ELERMGEKSATNLVNAIQASKENSME 503 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R + LGIRHVG + A+ +++ + S + L+ + +GD +A + Sbjct: 504 RLLIGLGIRHVGEKAAKIVSEQFGSMEAVMAATE----------EQLVAIYEIGDKMASS 553 Query: 612 IVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +VE++ N +E L + + K +V TG L+++ R++A+ Sbjct: 554 LVEYFSNDDARAVIERLAEVGVNMTFKGKKVEVVVGDNPFAGKTIVLTGKLEQLTRNEAK 613 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + +LG V+ +S+KTD++I G++ GSKL KA+QLG+++ NE+ + L Sbjct: 614 AKIEELGGTVTGSVSKKTDLVIAGEDAGSKLAKAEQLGIEVWNEDNLIEQLN 665 >gi|167624496|ref|YP_001674790.1| DNA ligase, NAD-dependent [Shewanella halifaxensis HAW-EB4] gi|190359286|sp|B0TKB2|DNLJ_SHEHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|167354518|gb|ABZ77131.1| DNA ligase, NAD-dependent [Shewanella halifaxensis HAW-EB4] Length = 667 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 242/711 (34%), Positives = 383/711 (53%), Gaps = 51/711 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + E++ L E++ H+ YY P I DSEYD L R A+ P + + Sbjct: 1 MQAIQTEIAQLTAELNQHNYRYYVDDSPSIPDSEYDRLLNRLKALETEHPQFCLA---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE ++ H P LSL+ +++ ++ F RI SI + EPK Sbjct: 58 PTQRVGGEALAKFEQIQHLKPMLSLDNVFDEQEFTAFNQRIT-----DKTGSISYCCEPK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192 +DG ++I Y G F AA RGDG +GE+++ +R I +IP L + + +EVRGEV Sbjct: 113 LDGLAVSITYRDGVFERAATRGDGQTGENITENVRTIKSIPLRLRGDNFPLLVEVRGEVI 172 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS---E 248 + F ALN+ A G K + NPRNAA+G LR+L+ +R L F+ + LG Sbjct: 173 MPHKAFDALNERARAKGEKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPESW 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 A Y L+++R G PV+ V+ ++ ++ YYN+++ RS+L ++IDG+V KV++ Sbjct: 233 ELADSHYGQLEQLRSWGVPVSQEVKVCDSVAQVIEYYNDIQQRRSSLEFEIDGVVIKVNQ 292 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q LG A++PRW + KF ++ T L +D Q+GRTG +TPVARL+PV +GG + Sbjct: 293 IAHQLSLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTV 352 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I L ++VGD ++++RAG+VIP++V ++ +R DA+ Sbjct: 353 SNATLHNADEIARL-----------GVKVGDTIIIRRAGDVIPQIVAVVAEKRPDDAKEI 401 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 SFP+ CP+C S V R A RCTGGL C AQ+ E +KHF SR A +I+G+G Sbjct: 402 SFPARCPVCDSEVERVEGE------AVARCTGGLFCEAQRKEAIKHFASRKALDIDGMGD 455 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E ++ PAD+F L + + + G S T L +I+ + Sbjct: 456 KVVEQLIDKE----LVQSPADLFKLTA------SAMTMLERMGMKSATKLVAAIDVAKQT 505 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + RF+++LGIR VG A +LA Y+ + + I+V VG I+ Sbjct: 506 TFARFLYALGIREVGEATAANLAAYFKTLDALKAANE----------ETFIKVDDVGTIV 555 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQ 667 A + F P N+ ++ L++ E ++ + V TGTL ++ R+ A+ Sbjct: 556 AAHLAHFLAQPHNLEVIDKLIEAGVHWPAIEEVAEEDLSLKGQTWVLTGTLTQLNRNDAK 615 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+ TD ++ G GSKL KAQ+LGVK+++EE + +L Sbjct: 616 AKLQLLGAKVAGSVSKNTDCLVAGAAAGSKLAKAQELGVKVIDEEALIAIL 666 >gi|331005395|ref|ZP_08328777.1| DNA ligase [gamma proteobacterium IMCC1989] gi|330420789|gb|EGG95073.1| DNA ligase [gamma proteobacterium IMCC1989] Length = 707 Score = 555 bits (1430), Expect = e-155, Method: Composition-based stats. Identities = 250/718 (34%), Positives = 390/718 (54%), Gaps = 45/718 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 SI Q ++L+ L ++I ++ YY P I D+EYD L + P S + Sbjct: 30 SITQLDQQLNELREKIHHYSYQYYALDNPTIPDAEYDRLFLELQTLEKENPSYVTS---D 86 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD--DNSIFFTL 130 P ++G + +VTH +P LSL+ ++ EDLR+F R+ D N I + Sbjct: 87 SPTQRVGAQPLSVFSQVTHRLPMLSLDNAFSAEDLREFHRRVTERLASLDITVNEIEYAC 146 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRG 189 EPK+DG +++ Y+KG V A RGDG +GED++ +R I +IP L N P+ +EVRG Sbjct: 147 EPKLDGIAVSLVYQKGILVQGATRGDGKTGEDITQNVRTIASIPLRLQGDNYPDDLEVRG 206 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE 248 E+Y+ K F LN A K +ANPRNAA+G LR+L+ R L + +G Sbjct: 207 EIYLPKAGFEKLNKIADAREEKRFANPRNAAAGSLRQLDSRITAQRPLEMCAYSVGVVDG 266 Query: 249 IF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 ++L + GF +N + Y++++ R+ LPYDIDG+V+KVD Sbjct: 267 GQVPTKHSDILYALSAWGFRINQEMASVKGIEACCDYFDQLSKKRNALPYDIDGIVFKVD 326 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQKQLG +R+PRW I+ KF ++ T LLD++ Q+GRTG +TPVARL+PV +GG Sbjct: 327 SIELQKQLGFVSRAPRWAIAQKFPAQEELTELLDVEFQVGRTGAITPVARLKPVFVGGVT 386 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN D ++ L +++GDRV+++RAG+VIP++V ++++R A+ Sbjct: 387 VSNATLHNSDEVERL-----------GVKIGDRVIIRRAGDVIPQIVSAVIDQRPDHARD 435 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 FPS CP+C S VR A RC+GGL C AQ + +KH+VSR A +++GLG Sbjct: 436 IIFPSSCPVCTSPTVRVEGE------ATIRCSGGLVCPAQIKQAIKHYVSRKAMDVDGLG 489 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ + I AD++ LQ Q + G+ S +N+ ++ + +N Sbjct: 490 DKLVEQLVE----LGHITSVADLYDLQVEQLANM------ERMGEKSASNVIHALEQSKN 539 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 + RFI++LG+R VG AR+LA+Y+ L RV VG + Sbjct: 540 TTFARFIYALGVREVGEATARNLAQYFGDISRLLTATE----------EDLQRVNDVGPV 589 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +AQ IV F +N + L ++ +++ + + V TGTL+++ R +A+ Sbjct: 590 VAQFIVAFLSQQKNKEVIAKLQEKGVHWEVIEQQDNPQPLLDTVYVLTGTLEQLTRDEAK 649 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 ++ QLGA V+ +S+KT ++ G+N GSKL KA+ LGV I+ E+ + LL +Y TL Sbjct: 650 AHLQQLGATVTGSVSKKTHFLVAGENAGSKLTKAESLGVNILGEQDLINLLNEYGITL 707 >gi|91775756|ref|YP_545512.1| DNA ligase, NAD-dependent [Methylobacillus flagellatus KT] gi|123254532|sp|Q1H1G6|DNLJ_METFK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91709743|gb|ABE49671.1| DNA ligase, NAD-dependent [Methylobacillus flagellatus KT] Length = 693 Score = 555 bits (1430), Expect = e-155, Method: Composition-based stats. Identities = 256/713 (35%), Positives = 382/713 (53%), Gaps = 47/713 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +++ +L I +D YY + P + DSEYD + R A+ A P+L P+ P + Sbjct: 18 AEKVEALRATIRRYDYEYYVLNAPSVPDSEYDRVFRELKALEDAHPELV---TPDSPTQR 74 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWN--IEDLRKFITRIYRFWQK-KDDNSIFFTLEPKI 134 +GG L V H +P LS+E + + F R+ + +D I + E K Sbjct: 75 VGGAAMAELMPVRHHVPMLSIETETDTTPQGAYNFDARVRKKLGLLPEDGPIEYAAELKF 134 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++RYE G V AA RGDG GEDV+ IR + IP L PE++EVRGEVY+S Sbjct: 135 DGLAMSLRYEHGLLVQAATRGDGEVGEDVTHNIRTMRQIPLQLHGEAPEVLEVRGEVYMS 194 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIFAK 252 + DF N G+ NPRN A+G +R+L+P R L+FF +GLG+T Sbjct: 195 RPDFERYNARQREHGKPTLVNPRNGAAGSIRQLDPRLAAQRPLSFFAYGLGETKGWQVPL 254 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 ++L ++ LG PV N + +++ + + R LPYDIDG+VYKV+ LQ Sbjct: 255 THAQVLDALKALGLPVCNERAVGMGAEALAAFHQAISAKRDQLPYDIDGVVYKVNRLDLQ 314 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG R+R P W ++HKF ++ T L ID+Q+GRTG +TPVARL+PV +GG +TNAT Sbjct: 315 RELGFRSREPNWAVAHKFPAQEEMTVLEHIDVQVGRTGAITPVARLKPVFVGGVTVTNAT 374 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN+D I +D+R+GD V+V+RAG+VIP+VV +I R +QP+ Sbjct: 375 LHNQDEIDR-----------KDVRIGDTVVVRRAGDVIPEVVSVIKERRPAGSQPYILLD 423 Query: 433 F----CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 CP+C S VR AA RCTGGL C+AQ+ + + HF SR A +IEGLG+ Sbjct: 424 AIGGLCPVCGSHAVRLPEE------AAVRCTGGLFCAAQRKQAILHFASRRAMDIEGLGE 477 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + +D + AD++ + + + + S NL D++ K + Sbjct: 478 KLVDQLVDQN----MVETLADLYDPGK---INLETLSGLDRMAMKSAQNLLDALQKSKQA 530 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI++LGIR+VG A+ LA+++ D +L +VP VG ++ Sbjct: 531 TLNRFIYALGIRNVGEATAKDLARHFGRLDALQAA----------DVDTLQQVPDVGPVV 580 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 A++I EF+ N + L S + SS++E K V TGTL + R +A+ Sbjct: 581 ARSIAEFFAEEHNREVIRKLRDAGIHWSETDGQPASSSKLEGKTFVLTGTLPTMSRDEAK 640 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 E + G VS +S+KT ++ G + GSKL KAQ+LG+ I++EE L LL + Sbjct: 641 EKIEAAGGKVSGSVSKKTSYVVAGSDAGSKLAKAQELGLAILDEEGLLSLLAE 693 >gi|254226208|ref|ZP_04919802.1| DNA ligase [Vibrio cholerae V51] gi|125621244|gb|EAZ49584.1| DNA ligase [Vibrio cholerae V51] Length = 669 Score = 555 bits (1430), Expect = e-155, Method: Composition-based stats. Identities = 242/711 (34%), Positives = 386/711 (54%), Gaps = 47/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + L+ L + + H YY P I D+EYD L R + A P+L + Sbjct: 1 MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELM---SSDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + V H IP LSL+ ++ +L F R+ ++ F EPK Sbjct: 58 PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192 +DG +++ YE G AA RGDG +GE+++ +R I +IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + K F ALN + G K + NPRNAA+G LR+L+ R L F+ + +G Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A Y+ +++ G P+ + + + ++Y ++ R +L Y+IDG+V KVD+ Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++N Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L + VGD V+++RAG+VIP++V +++ R +A+ F Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS V R A RC+GGL C AQ+ E LKHFVSR A ++EGLG + Sbjct: 405 PTHCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + PAD+F L+ ++ + G S N+ D++NK + +L Sbjct: 459 IEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAKQTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +F+++LGIR VG A +LA+++LS + Q I VP VG ++A Sbjct: 509 PKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 + F+ RN + LL++ P++ V S + K +V TG+ ++ R+ A+ Sbjct: 559 HLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S+ TDI+ G+ GSKL KA +LG+++ +E+ + L+ Sbjct: 619 ALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669 >gi|33597876|ref|NP_885519.1| DNA ligase [Bordetella parapertussis 12822] gi|81425567|sp|Q7W0T4|DNLJ_BORPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|33574305|emb|CAE38638.1| DNA ligase [Bordetella parapertussis] Length = 696 Score = 555 bits (1430), Expect = e-155, Method: Composition-based stats. Identities = 256/728 (35%), Positives = 388/728 (53%), Gaps = 69/728 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ ++ L EI H+ YY + P + D+EYDAL R A+ P+L P+ P + Sbjct: 9 QQAIARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELV---TPDSPTQR 65 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----DNSIFFTLEPK 133 +G V H++P LSL ++ ED+R F R+ + D + + E K Sbjct: 66 VGAAPLAEFGSVRHAVPMLSLGNAFDEEDVRAFDKRVADTLRGAGLLGLDQQVEYFCELK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG I++ YE+G+ AA RGDG +GEDV+A IR I +P L ++EVRGEV + Sbjct: 126 LDGLAISLCYEEGRLAQAATRGDGQTGEDVTANIRTIKGVPLRLHGAPR-VLEVRGEVLM 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 ++ +F LN A G K + NPRNAA+G LR+L+P R L FF + G+ + Sbjct: 185 NRAEFERLNRTQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHGLPEG 244 Query: 253 G---------------------QYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKS 290 ML + LG PVN + G++++Y + Sbjct: 245 MPTRFDEPAPGVRVASTLPRDTHGGMLDWLAELGLPVNLRHNHRERGADGLLAFYERIGK 304 Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350 +R+ LPYDIDG+VYKVD Q+ LG AR+PR+ ++HKF ++A T+LL I++Q+GRTG Sbjct: 305 LRADLPYDIDGVVYKVDALPSQRVLGFVARAPRFALAHKFPAEEAVTQLLGIEVQVGRTG 364 Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410 +TPVARL PV +GG +TNATLHNED I+ +D+R+GD V+V+RAG+VI Sbjct: 365 AITPVARLAPVFVGGVTVTNATLHNEDEIRR-----------KDVRIGDTVIVRRAGDVI 413 Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 P+VV ++ +R DA+ F + CPIC S + R A RCTGGL C+AQ+ + Sbjct: 414 PEVVGPVLEKRPADAREFVMLTACPICGSAIERPEGE------AIARCTGGLFCAAQRKQ 467 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530 L H R A +IEGLG++ +D ++ ++ ADI++L ++ + Sbjct: 468 TLLHAAGRKALDIEGLGEKLIDQLVDADR----VKSLADIYSLTA------FELAALERM 517 Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 G S NL +I++ R +L R +F+LGIRHVG AR +A+++ S + Sbjct: 518 GKKSAENLVAAIDQARRPALGRLLFALGIRHVGETTARDVARHFGSMERIMDASE----- 572 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650 +L+ VP VG ++A +I F+ P N VE L ++ E +S + K Sbjct: 573 -----EALLAVPDVGGVVAGSIRRFFAEPHNREIVEQLTQQGVHPQAEAEPEGTS-LAGK 626 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 V TGT+ R +A + G VS +S+KT ++ G++ GSKL KAQ+LGV +++ Sbjct: 627 TFVLTGTMPNWTRDEATRRILAAGGKVSGSVSKKTAYLVTGEDAGSKLTKAQELGVPVLD 686 Query: 711 EEQFLFLL 718 E+ LL Sbjct: 687 EDGLKALL 694 >gi|163736311|ref|ZP_02143730.1| DNA ligase, NAD-dependent [Phaeobacter gallaeciensis BS107] gi|161390181|gb|EDQ14531.1| DNA ligase, NAD-dependent [Phaeobacter gallaeciensis BS107] Length = 752 Score = 555 bits (1430), Expect = e-155, Method: Composition-based stats. Identities = 302/763 (39%), Positives = 441/763 (57%), Gaps = 57/763 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + +++L+ ++AR L+ E+ D Y+Q P I D++YDA KR A+A Sbjct: 1 MTQSGNNNLKSLTSDEARARFLLLQDELRAADLAYHQADDPEISDADYDAKKREYRALAE 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP+LA L +G + K+TH+ +SL ++ ED+R F + ++ Sbjct: 61 HFPELADGATA---LETVGAPVASGFGKITHAQRMMSLGNAFDDEDVRDFDKGLRKYLGL 117 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 + + +T EPKIDG +++RYE GK ++AA RGDG GE+V+ R I IP Sbjct: 118 GASDPLAYTAEPKIDGLSLSLRYENGKLIHAATRGDGAVGENVTENARTIADIP-QEIAA 176 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P ++EVRGEVY+S DF ALND A G K +ANPRNAA+G LR+LN +R L FF Sbjct: 177 APAVLEVRGEVYMSHEDFAALNDRHAAQGGKTFANPRNAAAGSLRQLNAEITRSRPLRFF 236 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ SE A+ Q+E L ++R +GF N + +T +++ Y +++ R+TL YDI Sbjct: 237 AYSWGELSEPLAETQFEALTRLREMGFQTNPLTKYCSTTDALIAQYRLIEAQRATLGYDI 296 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD +LQ +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL+ Sbjct: 297 DGVVYKVDALALQARLGFRSTTPRWAIAHKFPAELAWTRLEGIDIQVGRTGALSPVARLQ 356 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG +++NATLHNEDYI GLD+ G+ +R G+DIR+GD V V RAG+VIPK+ D+ + Sbjct: 357 PVTVGGVVVSNATLHNEDYIAGLDSKGEEIRDGKDIRIGDWVQVYRAGDVIPKIADVDLP 416 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R DA PF+FP+ CP C S VR+ A RCTGGL C AQ +E+LKHFVSR Sbjct: 417 KRPEDAVPFAFPAACPECGSDAVREEG------DAVRRCTGGLICPAQAVEKLKHFVSRK 470 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+I+GLG +Q++ F+ D +I+ PADIFTLQ R + K++N G+G+ S NL+ Sbjct: 471 AFDIDGLGAKQIEAFY--GDAVLTIKTPADIFTLQARDAKTLAKLKNRDGWGETSAANLF 528 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN-------------- 585 +I ++R I L R IF LGIRHVG AR LA +Y + A ++ Sbjct: 529 AAIEEKRRIELARLIFGLGIRHVGEVGARDLALHYADWDAMAAAVDTARPAALAQRAADE 588 Query: 586 -----------------------------NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 N+ + W L + +G + ++ + + Sbjct: 589 AEDRERVAAAQENRRARIKEARDRAVATLNVPSEARAAWDDLTGIDGIGATLGVSLSDAF 648 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 N A +AL + +N S + +VFTGTL+K+ R +A+ LGA Sbjct: 649 ANTEERAAFDALRGHLDIIPPEAPQN-DSPVTGLTVVFTGTLEKMTRAEAKARAEGLGAK 707 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V+ +S+KTDI++ G GSK +KA+ LGV+I++E+ +L L+ Sbjct: 708 VAGSVSKKTDILVAGPGAGSKEQKARDLGVRILDEDGWLELIA 750 >gi|329115587|ref|ZP_08244309.1| DNA ligase [Acetobacter pomorum DM001] gi|326695015|gb|EGE46734.1| DNA ligase [Acetobacter pomorum DM001] Length = 710 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 284/726 (39%), Positives = 415/726 (57%), Gaps = 35/726 (4%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + +P ++++QAR+EL L EI++H+ YY+ P I D+EYDAL+RR DAI Sbjct: 16 MPEPAFLP-ATMTLQQAREELEHLAAEIAHHNAAYYRNDAPEISDAEYDALRRRYDAIVA 74 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 P +E N +G + + K H +P LSL+ +++ ED FI+R RF Sbjct: 75 QHPQ---AEPENSAAQAVGAAPDTAFGKHIHLVPMLSLDNVFDREDFEGFISRATRFLGL 131 Query: 121 --KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 + + F EPKIDG I++ YEKG+FV RGDG GEDV+A +R + +P LS Sbjct: 132 DQEATEQLIFVGEPKIDGLSISLTYEKGRFVRGTTRGDGTEGEDVTANLRTLKDLPLRLS 191 Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237 + P++IE+RGEV++SK FL LN A ++ +ANPRNAA+G LR+L+ R L+ Sbjct: 192 GSYPDLIEIRGEVFLSKKHFLELNAAQEAANKRLFANPRNAAAGSLRQLDSKITAQRPLS 251 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 F + LG SE ++ + L++++ GFPVN RQ ++ E+ R+ L Y Sbjct: 252 LFAYALGFCSEKISRSHWAYLEQLKAWGFPVNPLSRQIKGVEDAEVFFAEVSQNRAELAY 311 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+VYK+D+ +LQ++LG R+PRW I+ KF +QA TRL +I+IQ+GRTG LTPVA Sbjct: 312 DIDGVVYKIDDLALQERLGFAGRAPRWAIAWKFPAEQAVTRLKEIEIQVGRTGALTPVAH 371 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI- 416 LEPVN+GG L+ ATLHNED I +D+R GD V ++RAG+VIP+V+ + Sbjct: 372 LEPVNVGGVLVMRATLHNEDEIAR-----------KDVRPGDMVFIQRAGDVIPQVLGVA 420 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 + P P+ FP CP C + VR A RCTGGL C AQ +ERL HFV Sbjct: 421 PSTDSTPRQAPYHFPDHCPACGAAAVRPEGE------AVRRCTGGLTCPAQVVERLIHFV 474 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 SR AF+IEGLG + + F I P DIF L IE G+G+ SV Sbjct: 475 SRQAFDIEGLGDRSIREFHD----IGLILTPGDIFRLHEH----AADIEKRDGWGEQSVQ 526 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 L +I RR ISL RFI++LGIR +GA AR LA++Y +Y+N+ ++ +D L Sbjct: 527 KLLQAIESRRTISLSRFIYALGIRRIGASNARLLARHYGTYENWFNQMQAAAIIGSDARL 586 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 L + +G A+ +V F N+ + L ++ + + K +VFTG Sbjct: 587 ELGSITGIGTTTAEDLVAFVAEEHNLQTLADLRANLTIT--EETAASEGALAGKTIVFTG 644 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL + R +A+ ++GA VS +S+KTD++++G+ GSK +KA +LG++ M+E ++ Sbjct: 645 TLHTMTRPEAKATAERMGAKVSDSVSKKTDLVVLGEKAGSKAKKAVELGLQTMDEAEWNA 704 Query: 717 LLQQYN 722 + Sbjct: 705 FCSEQE 710 >gi|157374877|ref|YP_001473477.1| DNA ligase (NAD(+)) [Shewanella sediminis HAW-EB3] gi|190359288|sp|A8FU26|DNLJ_SHESH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157317251|gb|ABV36349.1| DNA ligase (NAD(+)) [Shewanella sediminis HAW-EB3] Length = 670 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 249/712 (34%), Positives = 374/712 (52%), Gaps = 50/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++E+ L ++ H+ YY P + D+EYD L R + P+L P+ Sbjct: 1 MHAIQEEIKQLTSVLNEHNYRYYVDDAPSVPDAEYDRLINRLKQLEAENPELCL---PDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG ++TH P LSL+ +++ ++ F RI K + F EPK Sbjct: 58 PTQRVGGVALAKFNQITHLKPMLSLDNVFSEDEFDAFYKRISD----KTSETPTFCCEPK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192 +DG ++I Y G + AA RGDG GED++ +R I +IP L + P ++EVRGEV Sbjct: 114 LDGLAVSILYRDGVYERAATRGDGSVGEDITENVRTIRSIPLKLRGSDFPPLLEVRGEVI 173 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + K F +LND A G K + NPRNAA+G LR+L+ +R L F+ + LG Sbjct: 174 MPKKAFDSLNDRARAKGEKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPESW 233 Query: 252 K---GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 G +E L +++ GFPV++ V+ ++ YY ++ R L Y+IDG+V KVD Sbjct: 234 PLGKGHHEQLMQLKSWGFPVSSEVKLCGDVKTVLDYYADILERREALDYEIDGVVIKVDS 293 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q QLG A++PRW + KF ++ T L +D Q+GRTG +TPVARL+PV +GG + Sbjct: 294 IEHQLQLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTV 353 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I L ++VGD V+V+RAG+VIP+VV I+ +R A Sbjct: 354 SNATLHNADEIARL-----------GVKVGDTVIVRRAGDVIPQVVAIVAEKRPVSANDI 402 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP+C S V R A RCTGGL C AQ+ E +KHF SR A N++G+G Sbjct: 403 LFPQTCPVCDSMVERTEGE------AVARCTGGLFCEAQRKEAIKHFASRKALNVDGMGD 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E + PAD+F L + + + G S T L +I + Sbjct: 457 KVVEQLIDKE----LVASPADLFRLTA------SAMTMLDRMGMKSATKLVAAIEDAKQT 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + RF++ LGIR VG A +LA Y+ + D I+V VG I+ Sbjct: 507 TFARFLYGLGIREVGEATAANLANYFKNLDKLKSA----------DADEFIKVDDVGAIV 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQ 667 AQ + F+ P N+ V+ L++ E + ++ + V TGTL K+ R+ A+ Sbjct: 557 AQHLTYFFAQPHNLEVVDNLVQAGVHWPEIEEVAEEALSLKGQTWVLTGTLTKLNRNDAK 616 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S+ TD ++ G+ GSKL KAQ LGVK+++E+ L +L Sbjct: 617 AQLQALGAKVAGSVSKNTDCLVAGEAAGSKLTKAQDLGVKVLDEDGLLAVLA 668 >gi|54293931|ref|YP_126346.1| DNA ligase [Legionella pneumophila str. Lens] gi|81368949|sp|Q5WXV3|DNLJ_LEGPL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|53753763|emb|CAH15221.1| DNA ligase [Legionella pneumophila str. Lens] Length = 673 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 247/713 (34%), Positives = 383/713 (53%), Gaps = 46/713 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + ++ + +L+++I +D YY +P++ D+EYD + +P P Sbjct: 1 MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++ G + + V H P LSL ++ ++L+ FI R + + + F E Sbjct: 58 DSPTQRVSGTPSDAFMPVAHKQPMLSLSNVFTTDELKAFIKRAIEKLDE-PNQQLVFACE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG + + YE G +AA RGDG GE+++A I+ I ++P N P++IEVRGE Sbjct: 117 PKLDGLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGE 176 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG-KTSE 248 VYI K DF A N +G K +ANPRNAA+G LR+LNP +R L + +G+G Sbjct: 177 VYIPKADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDY 236 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E L ++ GF V+ R+A G + YY M + R+ LP++IDG+VYK+D Sbjct: 237 KLPNSHLEQLNLLKEFGFRVSPETRRAVGIEGCLDYYQYMLAKRNQLPFEIDGVVYKIDS 296 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 SLQ+QLG +R+PR+ +HKF + TRL+ +D Q+GRTG +TPVARLEPV++GG + Sbjct: 297 ISLQQQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTV 356 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I +DIR+GD V+++RAG+VIP+VV +I+ +R +A+ Sbjct: 357 SNATLHNFDEITR-----------KDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARMI 405 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP+C S VVR+ + A RC GGL C AQ + HF SR A IEGLG Sbjct: 406 ELPKNCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGS 459 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 +D + AD++ L + ++ G+ S NL ++ K + Sbjct: 460 VLIDQLVDE----GIVHHLADLYEL------DLQTLASLPRMGEKSAKNLLSALEKSKKT 509 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + RF+++LGIR +G AR LA++Y + L+ + +G + Sbjct: 510 TFNRFLYALGIREIGEAGARVLAEHYCDVEGLKAAT----------IEELMTLNDIGPVA 559 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A +V F+ N+ ++ LL+ P + + N + K +V TGTL + R +A Sbjct: 560 ASHVVHFFAQAHNLEVIDRLLELGIHWPKSEKIQVNQQNPFFGKTVVLTGTLSTMGREEA 619 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + LGA VS +S KTD ++ G GSKL KA +LGV I+ E++FL + Sbjct: 620 KAKLLALGAKVSGSVSSKTDYVVAGSEAGSKLIKATELGVAIIEEDEFLKWVN 672 >gi|217972882|ref|YP_002357633.1| DNA ligase, NAD-dependent [Shewanella baltica OS223] gi|254781416|sp|B8EEK5|DNLJ_SHEB2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|217498017|gb|ACK46210.1| DNA ligase, NAD-dependent [Shewanella baltica OS223] Length = 685 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 246/710 (34%), Positives = 379/710 (53%), Gaps = 51/710 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E ++ E A + + +L Q ++ H+ YY P I DSEYD L +R + +P L + Sbjct: 12 EDVTPENASQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVA- 70 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 + P ++GG ++TH P LSL+ ++ D F R+ + F Sbjct: 71 --DSPTQRVGGLALAKFDQITHLKPMLSLDNAFDEADFSAFHKRVTDKVG-----EVSFC 123 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188 EPK+DG ++I Y G AA RGDG GED++ ++ I +IP L N PE++EVR Sbjct: 124 CEPKLDGLAVSILYRHGVLERAATRGDGSVGEDITENVKTIKSIPLKLRGNDFPELVEVR 183 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE ++ K F ALND A K + NPRNAA+G LR+L+ R L F+ + LG Sbjct: 184 GEAFMPKAAFEALNDRARAKDEKLFVNPRNAAAGSLRQLDSKITAARSLAFYAYALGVVE 243 Query: 248 ---EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 AK +E LQ+++ G PV++ ++ + YY ++ + RS L ++IDG+V Sbjct: 244 PDSHPLAKTHFEQLQQLKSWGLPVSSEIKVCAELSQVYDYYKDILTRRSDLAFEIDGVVM 303 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++ Q++LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV +G Sbjct: 304 KVNDIDQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVG 363 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++NATLHN + I L I+VGD V+++RAG+VIP++V I+ R Sbjct: 364 GVTVSNATLHNANEIARL-----------GIKVGDTVIIRRAGDVIPQIVAIVPERRPET 412 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A FP CP+C S V R A RC+GGL C AQ+ E +KHF SR A +I+ Sbjct: 413 ATDIVFPHNCPVCGSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDID 466 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+G + ++ E ++ PAD+F L + + + G S TNL +I Sbjct: 467 GMGDKVVEQLIDKE----LVQSPADLFKLTA------SMMTMLDRMGMKSATNLAAAIEA 516 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + +L RF+++LGIR VG A +LA ++ S L V V Sbjct: 517 AKTTTLARFLYALGIREVGEATAANLAAHFASLDALRVAT----------VEQLTEVEDV 566 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQR 663 G ++AQ + F+ P N+ ++AL+ + ++ + V TGTL ++ R Sbjct: 567 GAVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSAEAQPLKGQTWVLTGTLNQLNR 626 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 + A+ + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK+M+E++ Sbjct: 627 NDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVMDEDE 676 >gi|229917963|ref|YP_002886609.1| DNA ligase, NAD-dependent [Exiguobacterium sp. AT1b] gi|229469392|gb|ACQ71164.1| DNA ligase, NAD-dependent [Exiguobacterium sp. AT1b] Length = 664 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 237/710 (33%), Positives = 377/710 (53%), Gaps = 52/710 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + + L Q ++ + YY +P + DSEYD L I +P+L P+ P Sbjct: 2 EMAERVEELRQTLNQYGYEYYVLDRPSVPDSEYDRLMNELIQIETDYPEL---RTPDSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + KVTH P LSL +++ E+L +++ RI + + F E K D Sbjct: 59 QRVGGAPLDAFVKVTHDTPMLSLGNVFSKEELVEWVERIEKDLG----YTPTFVAELKFD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G ++++YE G+ V A RGDG +GED++ ++ I +IP L+ ++ EVRGE Y+ K Sbjct: 115 GLAVSLKYENGRLVRGATRGDGTTGEDITQNLKTIRSIPLRLNEDV--TFEVRGEAYMPK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254 F LNDE +G +ANPRNAA+G LR+L+ +R L FF +GL ++ A Sbjct: 173 RSFEQLNDERERIGEPLFANPRNAAAGSLRQLDSKIAASRNLAFFAYGLVSQDDLVAS-H 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L ++ LG V+ T + Y + RS LPY+IDG+V KV + Q+Q Sbjct: 232 DESLDYLKRLGVAVSGDYTTCQTADELWDYIETYVTKRSDLPYEIDGIVIKVAGYEEQEQ 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW +++KF ++ T + D+D +GRTG +TP AR PV++ G+ +T ATLH Sbjct: 292 LGFTAKSPRWAVAYKFPAEEVVTTIEDVDFSVGRTGKVTPRARFAPVSVAGSTVTYATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED+IK +D+ +GDRV++K+AG+VIP VV + +ER + + FP+ C Sbjct: 352 NEDFIK-----------EKDLHIGDRVVIKKAGDVIPAVVSALASERSGEERVIEFPTHC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S ++R A HRC C AQ LE L HFVSR A NI+GLG++ + Sbjct: 401 PACGSELIRLEGE------ADHRCVNP-ECPAQLLEGLIHFVSRQAMNIDGLGEKVITQL 453 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + A + AD++ L R + G+ SVTNL +I + + SLER + Sbjct: 454 HE----AGLVHNVADLYRLDRDDLLG------LERMGETSVTNLLSAIEQSKQNSLERVL 503 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG + A +A+ + + L + +G +A++IV Sbjct: 504 FALGIRLVGQKAASLIAERFETMDAIIAAT----------VEELTSIDGIGTKMAESIVL 553 Query: 615 FYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 +++ P V+ L + + + + K +V TG L ++ R +A + + Sbjct: 554 YFEKPEARELVKELAESGVNLSFKGMKRPTTEGAPLSGKTVVLTGKLHEMTRGEAGKQLE 613 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 LGA V+ +S+ TD+++ G+ GSKL KA+ LG+++ +E + L L+++ Sbjct: 614 LLGASVTGSVSKNTDLLVAGEKAGSKLAKAESLGIEVWDEAKLLDFLKEH 663 >gi|251788438|ref|YP_003003159.1| NAD-dependent DNA ligase LigA [Dickeya zeae Ech1591] gi|247537059|gb|ACT05680.1| DNA ligase, NAD-dependent [Dickeya zeae Ech1591] Length = 682 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 252/717 (35%), Positives = 400/717 (55%), Gaps = 50/717 (6%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 +++ AR+ + L I +HD Y+ P ILDSEYD LKR + P L S Sbjct: 7 NQQNVDTARRRIKELRILIRHHDIKYHSEDDPEILDSEYDLLKRELSELEIQHPFLVTS- 65 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 + P ++G E ++ + H +P LSL+ ++N + + F R+ K+D + F Sbjct: 66 --DSPTQRVGAEPLVAFGTIKHEVPMLSLDNVFNEDGFKAFSKRVSERL--KNDKELIFC 121 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVR 188 E K+DG +++ YE G A+ RGDG +GE++++ +R I IP L + P+ +EVR Sbjct: 122 CELKLDGLAVSLLYENGILERASTRGDGTTGENITSNVRTIRAIPLRLEGDNIPQRLEVR 181 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEV++ F ALN+E G K +ANPRNAA+G LR+L+P TR L F +G+G Sbjct: 182 GEVFMKHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRVTATRPLTFLCYGVGLVE 241 Query: 248 E-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ L + R G PV++ +R ++ +Y +++ R L +DIDG+V KV Sbjct: 242 GGALPDTHWQRLMQFRDWGLPVSDRIRLCTGSDAVLDFYRQVEQERGALGFDIDGVVIKV 301 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 +E +LQ++LG AR+PRW ++ KF ++ T L D++ Q+GRTG +TPVARLEPV + G Sbjct: 302 NELTLQERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVARLEPVAVAGV 361 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++NATLHN D I+ L +++GDRV V+RAG+VIP++V ++++ER DA+ Sbjct: 362 VVSNATLHNADEIERL-----------GVQIGDRVAVRRAGDVIPQIVSVVLSERPADAR 410 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R A RCTGGL C+AQ+ E LKHFVSR A ++EG+ Sbjct: 411 PVVFPTHCPVCGSDVERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVEGM 464 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D E ++ PAD+ L + + G S NL +++NK + Sbjct: 465 GDKIIDQLVDKE----YVKTPADLLRL------DIGILTRLDRMGPKSAQNLVNALNKAK 514 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + + RF+++LGIR VG A +LA ++ + + D +L +V VG Sbjct: 515 STTFARFLYALGIRDVGEATAANLAAHFGTLEALQAA----------DLDALQQVQDVGI 564 Query: 607 IIAQAIVEFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 ++A + F N ++ L+ + + +S K +V TG+L + Sbjct: 565 VVATHVRNFLDEAHNQQVIQELIGDDVGLHWPDPVVVDVEASTSPFAGKTVVLTGSLSLL 624 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 625 SRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLTKAQELGIDVIDEAEMMRLL 681 >gi|121587330|ref|ZP_01677101.1| DNA ligase [Vibrio cholerae 2740-80] gi|121730035|ref|ZP_01682446.1| DNA ligase [Vibrio cholerae V52] gi|147675693|ref|YP_001216443.1| NAD-dependent DNA ligase LigA [Vibrio cholerae O395] gi|153818602|ref|ZP_01971269.1| DNA ligase [Vibrio cholerae NCTC 8457] gi|227081145|ref|YP_002809696.1| DNA ligase [Vibrio cholerae M66-2] gi|229505430|ref|ZP_04394940.1| DNA ligase [Vibrio cholerae BX 330286] gi|262167192|ref|ZP_06034905.1| DNA ligase [Vibrio cholerae RC27] gi|298498912|ref|ZP_07008719.1| DNA ligase, NAD-dependent [Vibrio cholerae MAK 757] gi|190359299|sp|A5F2W3|DNLJ_VIBC3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781449|sp|C3LTL9|DNLJ_VIBCM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|121548413|gb|EAX58473.1| DNA ligase [Vibrio cholerae 2740-80] gi|121628224|gb|EAX60744.1| DNA ligase [Vibrio cholerae V52] gi|126510828|gb|EAZ73422.1| DNA ligase [Vibrio cholerae NCTC 8457] gi|146317576|gb|ABQ22115.1| DNA ligase [Vibrio cholerae O395] gi|227009033|gb|ACP05245.1| DNA ligase [Vibrio cholerae M66-2] gi|227012788|gb|ACP08998.1| DNA ligase [Vibrio cholerae O395] gi|229357653|gb|EEO22570.1| DNA ligase [Vibrio cholerae BX 330286] gi|262024413|gb|EEY43101.1| DNA ligase [Vibrio cholerae RC27] gi|297543245|gb|EFH79295.1| DNA ligase, NAD-dependent [Vibrio cholerae MAK 757] Length = 669 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 386/711 (54%), Gaps = 47/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + L+ L + + H YY P I D+EYD L R + A P+L + Sbjct: 1 MSDVAQRLTELRKTLHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELM---SSDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + V H IP LSL+ ++ +L F R+ Q ++ F EPK Sbjct: 58 PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIQAVQHSA--FCCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192 +DG +++ YE G AA RGDG +GE+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGMTGENITENVRTIKAIPLRLQGADFPTRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + K F ALN + G K + NPRNAA+G LR+L+ R L F+ + +G Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A Y+ +++ G P+ + + + ++Y ++ R L Y+IDG+V KVD+ Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQFLAYEIDGVVIKVDDIQ 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++N Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L + VGD V+++RAG+VIP++V +++ R +A+ F Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS V R A RC+GGL C AQ+ E LKHFVSR A ++EGLG + Sbjct: 405 PTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + PAD+F L+ ++ + G S N+ D++NK + +L Sbjct: 459 IEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAKQTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +F+++LGIR VG A +LA+++LS + Q I VP VG ++A Sbjct: 509 PKFLYALGIREVGDATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F+ RN + LL++ P++ V S + K +V TG+ ++ R+ A+ Sbjct: 559 HLLAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S+ TDI+ G+ GSKL KA +LG+++ +E+ + L+ Sbjct: 619 ALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669 >gi|183179445|ref|ZP_02957656.1| DNA ligase [Vibrio cholerae MZO-3] gi|183012856|gb|EDT88156.1| DNA ligase [Vibrio cholerae MZO-3] Length = 669 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 242/711 (34%), Positives = 386/711 (54%), Gaps = 47/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + L+ L + + H YY P I D+EYD L R + A P+L + Sbjct: 1 MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELM---SSDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + V H IP LSL+ ++ +L F R+ ++ F EPK Sbjct: 58 PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192 +DG +++ YE G AA RGDG +GE+++ +R I +IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + K F ALN + G K + NPRNAA+G LR+L+ R L F+ + +G Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A Y+ +++ G P+ + + + ++Y ++ R +L Y+IDG+V KVD+ Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++N Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L + VGD V+++RAG+VIP++V +++ R +A+ F Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS V R A RC+GGL C AQ+ E LKHFVSR A ++EGLG + Sbjct: 405 PTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + PAD+F L+ ++ + G S N+ D++NK + +L Sbjct: 459 IEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAKQTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +F+++LGIR VG A +LA+++LS + Q I VP VG ++A Sbjct: 509 PKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 + F+ RN + LL++ P++ V S + K +V TG+ ++ R+ A+ Sbjct: 559 HLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S+ TDI+ G+ GSKL KA +LG+++ +E+ + L+ Sbjct: 619 ALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669 >gi|152997408|ref|YP_001342243.1| DNA ligase, NAD-dependent [Marinomonas sp. MWYL1] gi|190359264|sp|A6W0S9|DNLJ_MARMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|150838332|gb|ABR72308.1| DNA ligase, NAD-dependent [Marinomonas sp. MWYL1] Length = 672 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 247/709 (34%), Positives = 383/709 (54%), Gaps = 45/709 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L Q+++ + Y+ +PI+ D+ YD R+ +I P+ ++ + P ++ Sbjct: 4 QQMLDLIQQLNDYSYAYHVKDEPIVPDAVYDRDYRQLQSIEAEHPEWIQA---DSPTQRV 60 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + + V H++P LSL+ ++ E L F RI + + + + EPK+DG Sbjct: 61 GEKPDSGFTNVAHTVPMLSLDNAFDNESLADFDQRIRKLLNAE---QVTYCCEPKLDGLA 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKND 197 I++RYE+G+ V RGDG SGED+++ I+ I ++P + P ++EVRGE+Y+ K Sbjct: 118 ISLRYEEGRLVRGVTRGDGLSGEDITSNIKTIYSVPLKLRTKTPPAVLEVRGEIYMPKEG 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIFAKGQY 255 F LN + G K + NPRNAA+G LR+L+P R L + +G + Y Sbjct: 178 FEKLNALAVEQGEKTFVNPRNAAAGSLRQLDPKVTAKRPLVMCAYSIGYVEGWEQPESHY 237 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 L ++ GF N+ + A G + YY ++ R++L YDIDG+VYKVD+ +LQ QL Sbjct: 238 AGLLQLSEWGFRTNDLMITAEGAQGCIDYYEKLNEKRASLSYDIDGIVYKVDQIALQNQL 297 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G AR+PRW I+ KF ++ TR+L +D Q+GRTG +TPVARLEPV +GG ++NATLHN Sbjct: 298 GFIARAPRWAIARKFPAQEEMTRILGVDFQVGRTGAITPVARLEPVFVGGVTVSNATLHN 357 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 +D I L ++V D V+V RAG+VIPKVV +++++R +A FP CP Sbjct: 358 KDEIARL-----------GVKVNDFVIVHRAGDVIPKVVQVVIDKRPENATEVVFPEACP 406 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C S + + A RCTGGL C AQ E LKHFVSR A +I+GLG + ++ Sbjct: 407 VCGSDLEQVEGE------AVIRCTGGLVCGAQLKESLKHFVSRKAMDIDGLGDKLIEQLV 460 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + ++ P DIFTL ++ + ++ G SV L SI ++ RFI+ Sbjct: 461 DQQ----LVKTPVDIFTLSEKKD----TLLSMERMGQKSVEKLLASIEIAKSTQFNRFIY 512 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 SLGIR VG AR+L Y+ + D +L+ V VG I+AQ + F Sbjct: 513 SLGIREVGEATARALTSYFTELDDLMAA----------DQETLVEVEDVGPIVAQHVRLF 562 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + N ++ LL + + + + K V TG+L + R + ++ + LG Sbjct: 563 FDQELNRDTIKGLLAAGVVWEKKQQVSADELPLSGKTYVVTGSLSQFSRDQVKDKLQALG 622 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 A VS +S KTD ++ G+ GSKL KAQ L V I++E + LL ++ Sbjct: 623 AKVSGSVSAKTDCLVAGEKAGSKLTKAQSLNVPIIDEAGVIALLTEHGA 671 >gi|87199755|ref|YP_497012.1| DNA ligase, NAD-dependent [Novosphingobium aromaticivorans DSM 12444] gi|123763512|sp|Q2G7J5|DNLJ_NOVAD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|87135436|gb|ABD26178.1| DNA ligase, NAD-dependent [Novosphingobium aromaticivorans DSM 12444] Length = 721 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 288/749 (38%), Positives = 418/749 (55%), Gaps = 67/749 (8%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 AL+ +A EL L ++I+ H+ Y+ P I D+EYDAL RR + AFP L R Sbjct: 4 SALTEAEAANELMRLARQIAKHNRLYHAEDSPEITDAEYDALVRRNAELEAAFPHLIR-- 61 Query: 70 DPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ P +IG E+ S L KV H + +SL+ + E++ +F+ R+ RF +D + Sbjct: 62 -PDSPSAQIGHEIAASPLGKVQHEVRMMSLDNAFTDEEVEEFVARVRRFLALPEDAEVVM 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEI 184 T E KIDG ++RYE G+ V AA RGDG GEDV+A + IP IP+ L +IP + Sbjct: 121 TAEDKIDGLSCSLRYENGRLVRAATRGDGQVGEDVTANVAHIPDIPQELKAAGLFDIPAV 180 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 E+RGEVY++K+DFLALN G K +ANPRN A+G LR+ + + +R L F HG Sbjct: 181 FEIRGEVYMAKDDFLALNARQAEAGEKIFANPRNGAAGSLRQKDASVTASRPLRFLAHGW 240 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G SE+ A Q+EM++K+ G PV+ + + ++ +V++Y ++ R++LPYDIDG+V Sbjct: 241 GAASEVPAATQFEMMRKIADWGVPVSPLLVRCSSAAEMVAHYRDIGEKRASLPYDIDGVV 300 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YKVD Q +LG A++PRW I+HKF ++A T L IDIQ+GRTG LTPV RL+PV + Sbjct: 301 YKVDRLDWQDRLGFVAKAPRWGIAHKFPAERAETTLDAIDIQVGRTGKLTPVGRLKPVLV 360 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +TN TLHN D I L +RVGDR++++RAG+VIP+V + R Sbjct: 361 GGVTVTNVTLHNRDEIGRL-----------GLRVGDRIVLQRAGDVIPQV--VENLTREE 407 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P+ FP CP C S V + RCTGGL C AQ++ERLKHFVSR A +I Sbjct: 408 PRDPYHFPDHCPECGSEAVAEEGE------VDVRCTGGLICPAQRVERLKHFVSRAALDI 461 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGLG++ + FF+ + PADIF L++R+ +I G+ D SV NL +I Sbjct: 462 EGLGEKTIIEFFQ----LGWLESPADIFRLRKRRS----EIVGREGWKDKSVDNLLAAIE 513 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ--------------------- 582 +R R +F LGIRHVGA AR L K +++ + Sbjct: 514 AKRQPDAARLLFGLGIRHVGAVTARDLMKRFVTLPALREAARQASSAAREGEPANADGAY 573 Query: 583 ---------EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + A +D L+ + VG ++ +A+ +F+ P NI E LL EVS Sbjct: 574 DPATVTPDSDTAGAEAGRSDALADLLSIDGVGPVVVEALGDFFHEPHNIAVWEDLLSEVS 633 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 P E S + K +VFTG L+ + R +A+ LGA + +S KTD+++ G Sbjct: 634 PPPYVVE-TKDSAVAGKTIVFTGKLETMSRDEAKAQAEALGARTAGSVSAKTDLVVAGPG 692 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 GSKL++A LG+ +++E + +++Q Sbjct: 693 AGSKLKQAAALGIDVIDEAAWAEIVRQAG 721 >gi|153826197|ref|ZP_01978864.1| DNA ligase [Vibrio cholerae MZO-2] gi|149740057|gb|EDM54226.1| DNA ligase [Vibrio cholerae MZO-2] Length = 669 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 242/711 (34%), Positives = 387/711 (54%), Gaps = 47/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + L+ L + + H YY P I D+EYD L R + A P+L + Sbjct: 1 MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELM---SSDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + V H IP LSL+ ++ +L F R+ ++ F EPK Sbjct: 58 PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192 +DG +++ YE G AA RGDG +GE+++ +R I +IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + K F ALN + G K + NPRNAA+G LR+L+ R L F+ + +G Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A Y+ +++ G P+ + + + ++Y ++ R +L Y+IDG+V KVD+ Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++N Sbjct: 296 LQERLGFVARAPRWAIAYKFPSQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L + VGD V+++RAG+VIP++V +++ R +A+ F Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS V R A RC+GGL C AQ+ E LKHFVSR A ++EGLG + Sbjct: 405 PTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + PAD+F L+ ++ + G S N+ D++NK + +L Sbjct: 459 IEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAKQTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +F+++LGIR VG A +LA+++LS + Q I VP VG ++A Sbjct: 509 PKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F+ RN + LL++ P++ V S + K +V TG+ ++ R+ A+ Sbjct: 559 HLLAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S+ TDI+ G+ GSKL KA +LG+++ +E+ + L+ Sbjct: 619 ALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669 >gi|237807406|ref|YP_002891846.1| DNA ligase, NAD-dependent [Tolumonas auensis DSM 9187] gi|237499667|gb|ACQ92260.1| DNA ligase, NAD-dependent [Tolumonas auensis DSM 9187] Length = 686 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 253/718 (35%), Positives = 398/718 (55%), Gaps = 53/718 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + + + +L+Q + ++ YY + +P + D+EYD L + A P D N Sbjct: 1 MNEIQSRMHALQQLLERYNTEYYLHDEPSVPDAEYDRLMNELRELEAANPQWL---DVNS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG S V H P LSL+ ++N EDL F R+ +++I F EPK Sbjct: 58 PTQRVGGVALTSFGSVQHEQPMLSLDNVFNAEDLAAFGRRVQERL--LSNDAITFCCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE+G+ V AA RGDG +GED++ +R I IP LS + P IEVRGEV+ Sbjct: 116 LDGLAVSILYEQGELVRAATRGDGVTGEDITRNVRTIRVIPLRLSGDNIPARIEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS--EI 249 + K F N++ + G K +ANPRNAA+G LR+L+P R L F+ + +G Sbjct: 176 MPKAGFERWNEQALVRGDKVFANPRNAAAGSLRQLDPAITAQRPLAFYAYAIGVVDEATE 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Y +Q ++ G PV + +RQ G Y++++ + R LP++IDG+V+KVD Sbjct: 236 LPDSHYARMQYLKQFGLPVCDEIRQVVGVEGCQIYHDDILAKRDALPFEIDGVVFKVDTI 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+ LG +R+PRW ++HKF ++ TRL D++ Q+GRTG +TPVARLEPV +GG ++ Sbjct: 296 AQQQMLGFVSRAPRWAVAHKFPAQEELTRLNDVEFQVGRTGAITPVARLEPVQVGGVTVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I L +++GD V+V+RAG+VIP++V+++++ R + Sbjct: 356 NATLHNADEITRL-----------GVKIGDWVVVRRAGDVIPQIVNVVLDRRDASCRDID 404 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP CP+C S+V R A RC+GGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 405 FPERCPVCDSQVERLPGE------AVARCSGGLYCAAQRKEALKHFVSRRAMDIDGIGDK 458 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ E + PAD+F L + Q + G+ S L +++ R + Sbjct: 459 LIEQLVDHE----LVHTPADLFALTKAQLLG------LERMGEKSADKLLNALQSARETT 508 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+F+LGIR +G A++LA+++ +L++V VG+++A Sbjct: 509 FARFLFALGIREIGETTAQTLAQHFSDLPALQDA----------SVETLLKVSDVGEVMA 558 Query: 610 QAIVEFYQNPRNICAVEALLK-------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 + I F++ N+ ++ LL +S + + K LV TGTL ++ Sbjct: 559 KHIYYFFRQEHNLEVIQRLLAPISEGGAGISWQPVARVAVDALPLNGKTLVLTGTLSQLN 618 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R A++ + LGA V+ +S KTD++I G+ GSKLEKAQQLGV + E++ + LLQ Sbjct: 619 RDAAKQALQALGAKVAGSVSAKTDLVIAGEAAGSKLEKAQQLGVPVWGEDELVALLQD 676 >gi|262165212|ref|ZP_06032949.1| DNA ligase [Vibrio mimicus VM223] gi|262024928|gb|EEY43596.1| DNA ligase [Vibrio mimicus VM223] Length = 682 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 244/716 (34%), Positives = 384/716 (53%), Gaps = 48/716 (6%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E ++ + L L Q + H YY P I D+EYD L R + A P+L Sbjct: 9 ERFTMSNVEQRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELI--- 65 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++GG V H IP LSL+ ++ +L F R+ F Sbjct: 66 TPDSPSLRVGGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRI--PAVQQSHFC 123 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVR 188 EPK+DG +++ YE G AA RGDG +GE+++ +R I +IP L + + +EVR Sbjct: 124 CEPKLDGLAVSLLYENGVLTRAATRGDGATGENITENVRTINSIPLRLQGSDFPVRLEVR 183 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247 GEV++ K F ALN + G K + NPRNAA+G LR+L+ R L F+ + +G Sbjct: 184 GEVFMPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSRITAQRPLAFYAYSVGIID 243 Query: 248 E-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 A Y+ +++ G P+ + + + ++Y ++ R +L Y+IDG+V KV Sbjct: 244 GGELATSHYQRFLQLKRWGLPICPETKPVTSLIEVKAFYQDILQRRQSLAYEIDGVVIKV 303 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ LQ++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG Sbjct: 304 DDIQLQERLGFVARAPRWAIAYKFPAQEELTILNDVEFQVGRTGAITPVAKLEPVFVGGV 363 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++NATLHN D I+ L + VGD V+++RAG+VIP++V +++ R DA+ Sbjct: 364 TVSNATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPIDAK 412 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+CQS + R A RCTGGL C AQ+ E LKHFVSR A +++GL Sbjct: 413 PIVFPACCPVCQSEIERIEGE------AVARCTGGLICQAQRKEALKHFVSRKAMDVDGL 466 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ E + PAD+F L+ ++ + G S N+ D++NK + Sbjct: 467 GDKVIEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAK 516 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RF+++LGIR VG A +LA+++L+ AQ LI VP VG Sbjct: 517 QTTLPRFLYALGIREVGEATALNLAQHFLTLDAIAQA----------SMDQLIEVPDVGG 566 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQR 663 ++A + F+ RN + L++ + S + K +V TG+ ++ R Sbjct: 567 VVASHLHAFFAQSRNQQVIAELIELGITWPAMAVASSIAADSALAGKVVVLTGSFTQLSR 626 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + A+ + LGA V+ +S+ TDI+ G+ GSKL KA +LG+++++E+ + L+ Sbjct: 627 NDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLSKAAELGIQVLDEQALIDFLK 682 >gi|319897423|ref|YP_004135620.1| DNA ligase, nad(+)-dependent [Haemophilus influenzae F3031] gi|317432929|emb|CBY81295.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3031] Length = 679 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 240/707 (33%), Positives = 389/707 (55%), Gaps = 45/707 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S + Sbjct: 10 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 66 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ ++ + F+ RI + F EPK Sbjct: 67 PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVNRIEDRLILLP-KPLTFCCEPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I Y G+ AA RG+G +GED++A IR I +P L + N P +EVRGEV+ Sbjct: 126 LDGLAVSILYVNGELTQAATRGNGTAGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 185 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250 + F LN + K +ANPRNAA+G LR+L+P ++ +G+G + Sbjct: 186 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 245 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ Sbjct: 246 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIG 305 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 306 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 365 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ R +A+P F Sbjct: 366 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 414 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S+++R RCTGGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 415 PTNCPVCDSQIIRIEGET------VARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 468 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E I PAD+F L T + + G S N +S+ ++ +L Sbjct: 469 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGAKSAENALNSLENAKSTTL 518 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGIR VG A +LA ++ + + L +VP VG+++A Sbjct: 519 ARFIFALGIREVGEATALNLANHFKTLDALKDA----------NLEELQQVPDVGEVVAN 568 Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F++ N+ VE L+ + ++ + ++K +V TGTL ++ R++A+ Sbjct: 569 RIFIFWREAHNVAVVEDLITQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 628 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + QLGA VS +S KTD +I GD G+KL KAQ+L + ++ EE+FL Sbjct: 629 LQQLGAKVSGSVSSKTDFVIAGDAAGAKLAKAQELNITVLTEEEFLA 675 >gi|229529935|ref|ZP_04419325.1| DNA ligase [Vibrio cholerae 12129(1)] gi|229333709|gb|EEN99195.1| DNA ligase [Vibrio cholerae 12129(1)] gi|327483693|gb|AEA78100.1| DNA ligase [Vibrio cholerae LMA3894-4] Length = 669 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 385/711 (54%), Gaps = 47/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + L+ L + + H YY P I D+EYD L R + A P+L + Sbjct: 1 MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELM---SSDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + V H IP LSL+ ++ +L F R+ Q ++ F EPK Sbjct: 58 PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIQAVQHSA--FCCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192 +DG +++ YE G AA RGDG +GE+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGMTGENITENVRTIKAIPLRLQGADFPTRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + K F ALN + G K + NPRNAA+G LR+L+ R L F+ + +G Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A Y+ +++ G P+ + + + ++Y ++ R L Y+IDG+V KVD+ Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQFLAYEIDGVVIKVDDIQ 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++N Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L + VGD V+++RAG+VIP++V +++ R +A+ F Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS V R A RC+GGL C AQ+ E LKHFVSR A ++EGLG + Sbjct: 405 PTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + PAD+F L+ ++ + G S N+ D++NK + +L Sbjct: 459 IEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAKQTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +F+++LGIR VG A +LA+++LS + Q I VP VG ++A Sbjct: 509 PKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 + F+ RN + LL++ P++ V S + K +V TG+ ++ R+ A+ Sbjct: 559 HLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S+ TDI+ G+ GSKL KA +LG+++ +E+ + L+ Sbjct: 619 ALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669 >gi|85059656|ref|YP_455358.1| NAD-dependent DNA ligase LigA [Sodalis glossinidius str. 'morsitans'] gi|123766419|sp|Q2NSC2|DNLJ_SODGM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|84780176|dbj|BAE74953.1| DNA ligase [Sodalis glossinidius str. 'morsitans'] Length = 678 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 251/720 (34%), Positives = 404/720 (56%), Gaps = 51/720 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +EQ + + L +++ + + YY + P + DSEYD + PDL + + Sbjct: 1 MEQIEQHILRLRKQLRHWEYLYYVEAAPEVPDSEYDRFMAELRTLEAERPDLLTA---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG+ S +V H +P LSL+ ++ F R+ ++ DD + + E K Sbjct: 58 PSQRVGGQAQSSFGQVRHEVPMLSLDNVFEEPGFLAFDKRVRDRLKRDDD--MTYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI--PEIIEVRGEV 191 +DG +++ YE G+ V AA RGDG +GED++A +R I TIP L + P ++E+RGEV Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGATGEDITANVRTIRTIPLRLQDHDNLPRLLEIRGEV 175 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEI 249 ++S+ FL LN+ G K +ANPRNAA+G LR+L+P+ R L F+ +G+G Sbjct: 176 FMSEAGFLRLNETAKREGSKVFANPRNAAAGSLRQLDPSITARRPLTFYCYGVGLLEDGE 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + +E LQ+ + G PV++ VR+ ++ +Y ++ R +L +DIDG+V KVD Sbjct: 236 LPESHWERLQQFKAWGVPVSDRVRRCTGSAAVLDFYRQVHEARLSLGFDIDGVVIKVDSL 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG AR+PRW I++KF ++ TR+ D++ Q+GRTG +TPVARLEPV + GA+++ Sbjct: 296 ALQQRLGFVARAPRWAIAYKFPAQEQLTRVRDVEFQVGRTGAITPVARLEPVLVSGAMVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D ++ L + +GD V+V+RAG+VIP++V ++ +ER + +P + Sbjct: 356 NATLHNADEVERL-----------GLMIGDTVIVRRAGDVIPQIVGVVTSERPAEVRPVA 404 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R A RCT GL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 405 FPTQCPVCSSDVERVEGE------AVLRCTAGLVCAAQRKEALKHFVSRRAMDIDGMGDK 458 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E ++ PAD+F L + + + G S NL +++ K R + Sbjct: 459 IIDQLVERE----LVKTPADLFRLNKE------ILTRLDRMGSKSAQNLLEALEKARQTT 508 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A +LA Y + D SL V +G+I+A Sbjct: 509 FARFLYALGIREVGEATAVNLAAAYGTLDALIAA----------DIDSLTGVQDIGNIVA 558 Query: 610 QAIVEFYQNPRNICAVEALLK-EVSP----SIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 + F++ NI ++ LL + + + K +V TG+L + R Sbjct: 559 THVRHFFEETHNIEVIQDLLSPAIGIRWPEPVAAPVAASDNPFAGKTIVLTGSLSSLSRD 618 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 +A++++ LGA VS +S KTD++I G+ GSKL KAQQL + +M+E + + LL + + Sbjct: 619 EAKDHLVALGARVSGSVSAKTDLLIAGEAAGSKLSKAQQLNIPVMDEAEMMRLLGESSDA 678 >gi|307152955|ref|YP_003888339.1| NAD-dependent DNA ligase [Cyanothece sp. PCC 7822] gi|306983183|gb|ADN15064.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7822] Length = 682 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 225/717 (31%), Positives = 377/717 (52%), Gaps = 53/717 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++ + L E+ YY PI+ D+ YD L R + + +P+L P+ P Sbjct: 7 EIQQRVEQLRSELQKASYAYYVLDNPIMEDAVYDQLYRELENLETQYPELI---TPDSPT 63 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G +++ V H IP SLE +N+E+ ++ R R + + E KID Sbjct: 64 QRVGDKLSEQFTSVKHHIPLYSLENAFNLEEFTRWQERWQRI--APETKQFEYVCELKID 121 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYIS 194 G+ I + YE G V RGDG GE+++ I+ I +IP S + P +EVRGE ++ Sbjct: 122 GSAIALTYENGLLVRGVTRGDGVVGEEITQNIKTIRSIPLRLQSDHPPARVEVRGEAFLP 181 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT----RYLNFFVHGLGKTSEIF 250 +F +N E A G +ANPRNAA+G LR+L+P + ++ + ++ + ++ + Sbjct: 182 VEEFERINQEKAATGESLFANPRNAAAGTLRQLDPKIVDRRRLQFFAYTLYIVDTENQSY 241 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + Q+E L+ ++ +GF VN + + + YY + R LPY DG+V K++++ Sbjct: 242 PQTQWESLEFLQKIGFLVNPNRKLCQSLEDVEQYYQHWDTRRRNLPYMTDGVVVKINDYD 301 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQKQLG + PRW I+ K+A ++A TR+ +I + +GRTG +TP+A +EPV + G + Sbjct: 302 LQKQLGFTQKFPRWAIALKYAAEEAPTRVKNITVNVGRTGAVTPMAIMEPVQLAGTTVQK 361 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D + L DIRVGD V++++AGE+IP+VV +I R + QP+ Sbjct: 362 ATLHNSDRVAQL-----------DIRVGDTVIIRKAGEIIPEVVRVISELRPANTQPYQM 410 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S +VR A RC +C A L H+ SRDA +I GLG++ Sbjct: 411 PTHCPECNSTLVRPKGE------AVTRCVNS-SCPAILRGSLVHWCSRDALDIRGLGEKV 463 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + ++E ++ D++ L+ Q S + G S NL ++INK + Sbjct: 464 VILLIENE----LVKSIVDLYGLKAEQIAS------LERMGTKSANNLVNAINKSKQQPW 513 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R ++ LGIR+VG A+ L + + + ++ + SL V +G IAQ Sbjct: 514 SRVLYGLGIRYVGNVTAKILTDNFPTVEQLSRA----------SFASLESVYGIGSEIAQ 563 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSI-----GRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++ ++++ N+ V+ L + ++ + ++ K V TGTL ++R++ Sbjct: 564 SVSDWFKIEANLTLVKQLQQAGLQFETATVTKNTSESTPTPLKGKTFVITGTLPSLKRNE 623 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 AQ+ + + G V+ +S KTD ++VG++ GSKL KAQQLG+ ++EE L ++Q N Sbjct: 624 AQQLIEEAGGKVTGSVSAKTDYLVVGEDAGSKLAKAQQLGIIQLSEEALLAMIQGKN 680 >gi|126659779|ref|ZP_01730906.1| NAD-dependent DNA ligase LigA [Cyanothece sp. CCY0110] gi|126618931|gb|EAZ89673.1| NAD-dependent DNA ligase LigA [Cyanothece sp. CCY0110] Length = 677 Score = 554 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 235/709 (33%), Positives = 374/709 (52%), Gaps = 47/709 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 + ++ L Q++ + YY PI+ D+ YD L R D + P L P+ P Sbjct: 8 VEQRVTQLRQQLQKANYAYYVLDDPIMEDAVYDQLYRELDNLEKEHPQLI---TPDSPTQ 64 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G + VTH+IP SLE +N+++L+ + R R+ +K+D ++I + E KIDG Sbjct: 65 RVGDKPASQFVSVTHNIPLYSLENAFNLDELKAWKNRWQRYSEKEDLDTIEYVCELKIDG 124 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISK 195 + + + YE G + RGDG +GED++ IR I +IP L+ N P +IEVRGE ++ Sbjct: 125 SALALTYENGLLIRGVTRGDGTTGEDITQNIRTIRSIPLKLNLDNPPPMIEVRGEAFLPL 184 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 ++F +N E G +ANPRNAA+G LR+L+P + + F E Q+ Sbjct: 185 DEFDRINQEREEKGEALFANPRNAAAGTLRQLDPKIVDQRRLQFFAYTLHLEETEISSQW 244 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + L ++ GF VN + + + Y+ + ++ R LPY DG+V K++++SLQK L Sbjct: 245 QSLNYLQNSGFLVNPHRKLCQSLDEVADYFKQWETARKDLPYMTDGVVVKINDYSLQKAL 304 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G + PRW I+ K+ ++A T + DI + +GRTG +TP+A ++PV++ G + ATLHN Sbjct: 305 GFTQKFPRWAIALKYPAEEAPTIVKDIIVNVGRTGAVTPMAVMKPVHLAGTTVQKATLHN 364 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I L DIRVGD V++++AGE+IP+VV ++ R PD QP+ P CP Sbjct: 365 SDRISQL-----------DIRVGDTVIIRKAGEIIPEVVRVLKELRPPDTQPYEMPDRCP 413 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S ++R A RC L+C+A L H+ SRDA +I GLG++ + Sbjct: 414 ECNSLLIRPPEE------AVLRCMN-LSCNAILKGSLVHWSSRDALDIRGLGERIVVLLI 466 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 +E + AD++ L KI N+ G S NL +I + R ++ Sbjct: 467 DNE----LVNSIADLYYLTPE------KIANLERMGSKSADNLIKAIEGSKQQPFSRVLY 516 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIR+VG+ A L + +LS +Q + SL V VG IAQ+I+++ Sbjct: 517 GLGIRYVGSVTANLLTENFLSIDQLSQA----------SFTSLCSVYGVGGEIAQSIIDW 566 Query: 616 YQNPRNICAVEALLK---EVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYV 670 + +N ++ L K ++ + SS + K V TGTL + R +A+ + Sbjct: 567 FSIQKNYDLIQQLKKVGLQLEITSSEKNTVESSLTPLSGKTFVITGTLPTLNRTEAKTLI 626 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + G V+ +S+KTD +++G+N GSKL KAQ+LG+ ++E L LQ Sbjct: 627 EKAGGKVTGSISKKTDYLLLGENAGSKLIKAQELGITQLSEADLLAFLQ 675 >gi|83590843|ref|YP_430852.1| DNA ligase, NAD-dependent [Moorella thermoacetica ATCC 39073] gi|123739230|sp|Q2RGY0|DNLJ_MOOTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|83573757|gb|ABC20309.1| DNA ligase, NAD-dependent [Moorella thermoacetica ATCC 39073] Length = 666 Score = 554 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 254/711 (35%), Positives = 371/711 (52%), Gaps = 47/711 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + AR+ + L + I H+ YY +P I D EYDAL + A+ A+P+L P Sbjct: 1 MDLAAARQRVEELRRLIEEHNYRYYVLDQPSISDREYDALMQELIALEEAYPEL---RTP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG +V H LSL +N DL +F R+ + + + +E Sbjct: 58 DSPSQRVGGAPREEFNQVRHPQVLLSLNDAFNEGDLLEFDRRVRDLAGR----PVEYVIE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG + + Y G F A RGDG GE+V+A ++ IP + + VRGEV Sbjct: 114 AKIDGLAVALTYRDGLFTLGATRGDGQVGEEVTANLKTIP-ALPLRLRRPLPFLVVRGEV 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+ K F ALN G +ANPRNAA+G LR+L+P +R L+ FV+ + + Sbjct: 173 YMPKVAFTALNAAREEAGEPLFANPRNAAAGSLRQLDPKITASRSLSLFVYQVISLTGAE 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVYKVDEF 309 Q L + LGFPVN A ++ R PY+IDGLV KV++ Sbjct: 233 VATQAGALDFLAELGFPVNPYRVVAPDIQAVLEEVKAWTPERRASLPYEIDGLVIKVNDL 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +L LG A++PRW +++KF +QA+ R+ I +++GRTG+LTP A L PV + G ++ Sbjct: 293 ALHSVLGATAKAPRWAMAYKFPAEQATARVEGIILRVGRTGVLTPTAVLTPVRLAGTTVS 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHNEDYI+ +DIR+GD V+V++AG++IP+VV +I R + F+ Sbjct: 353 RATLHNEDYIR-----------EKDIRIGDTVIVQKAGDIIPEVVAVIPERRTGSEEVFT 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C + VVR AAHRCTGGLAC AQ LE + HF SR A +I+GLG Sbjct: 402 MPERCPACGAAVVRPPGE------AAHRCTGGLACPAQVLEGIIHFASRGAMDIQGLGPA 455 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + + A I AD++ L+ + FG S +NL +I + Sbjct: 456 IVAQLLE----AGLIHDAADLYYLKEEDL------LKLERFGQQSASNLLAAIAASKKQP 505 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER IF+LGIR+VG AR LA ++ S A L +P +G IA Sbjct: 506 LERLIFALGIRNVGQRAARVLADHFGSLDKLAAAT----------VEELTALPDIGPRIA 555 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 + I EF+ PRN +E L K + + + K V TGTL + R +A+E Sbjct: 556 ENIREFFGEPRNRAVLEKLKKAGVRLEALNAAAPAGPLTGKVFVLTGTLPGMTRQEAEEL 615 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +T+ G VS+ +SRKTD ++ G+ PGSKL++A++LGV ++N + LL+Q Sbjct: 616 ITRAGGKVSSSVSRKTDYVVAGEKPGSKLDRARELGVPVINADGLRQLLRQ 666 >gi|90579891|ref|ZP_01235699.1| DNA ligase [Vibrio angustum S14] gi|90438776|gb|EAS63959.1| DNA ligase [Vibrio angustum S14] Length = 670 Score = 554 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 252/696 (36%), Positives = 396/696 (56%), Gaps = 47/696 (6%) Query: 29 SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88 YH YY P I D+EYD + ++ I P+ + P ++GG + Sbjct: 17 DYHGHRYYVEDNPEIPDAEYDRMMQQLIKIEADHPEWITV---DSPSQRVGGAALEGFTQ 73 Query: 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148 V H I LSL+ +N +DLR F R+ + ++ + EPK+DG +++ YE G Sbjct: 74 VKHEIAMLSLDNAFNDDDLRAFQKRLQDRLRS--GATLSYCCEPKLDGLAVSLMYENGVL 131 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG +GE+++ +R I IP L + PE +EVRGEV++ K F ALN + + Sbjct: 132 VQAATRGDGATGENITHNVRTIRAIPLKLQGDDWPERLEVRGEVFMPKKGFEALNAKALK 191 Query: 208 VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIFAKGQYEMLQKMRCLG 265 G K +ANPRNAA+G LR+L+P TR L+F+ + +G A QYE L +++ G Sbjct: 192 KGDKAFANPRNAAAGSLRQLDPKITATRPLSFYAYAVGVVDGRELANTQYERLCQLKAWG 251 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 P+ +R+ ++ ++SY+ + R +L Y+IDG+V KVD+ Q+QLG AR+PRW Sbjct: 252 LPMCPEIRKVDSIEDVISYHQSIGEKRQSLGYEIDGVVIKVDDVDTQQQLGFVARAPRWA 311 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 I++KF ++ T L +++ Q+GRTG +TPVA+LEPV +GG ++NATLHN D + L Sbjct: 312 IAYKFPAQEEMTILNNVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEVARL--- 368 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 + +GD V+++RAG+VIP++ ++ + R +AQ FP+ CP+CQS+V R Sbjct: 369 --------GVMIGDTVIIRRAGDVIPQIASVVESRRPENAQAIVFPTECPVCQSKVERIE 420 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 A RCTGGL C AQ+ E LKHFVSR A +++G G++ ++ E + Sbjct: 421 GE------AVARCTGGLFCQAQRKEALKHFVSRKALDVDGCGEKVIEQLVDRE----MVT 470 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 PAD+F + S ++ + G S L D++N + +L RFI SLGIR VG Sbjct: 471 TPADLF------KFSAGEVTVLERMGPKSAQKLVDALNASKLTTLPRFIHSLGIREVGEA 524 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 A +LA Y+ + ++ +Q LI VP VGDI+A I F++ N+ V Sbjct: 525 TAANLANYFETLESISQATK----------EQLIEVPDVGDIVAAHIFNFFREEHNMVVV 574 Query: 626 EALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 L + P I + +++V ++ K +V TG+L ++ R A+ + +LGA V+ +S+ Sbjct: 575 NELQEVGIHWPEIEKRDEDVELPLDGKVVVLTGSLSQLTRSDAKAALQKLGAKVTGSVSK 634 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 KTD+++ G+ GSKL KAQ+LG++I +E++ + L+ Sbjct: 635 KTDLLVAGEAAGSKLTKAQELGIEIWDEQKLVDLMA 670 >gi|15640987|ref|NP_230618.1| NAD-dependent DNA ligase LigA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153822692|ref|ZP_01975359.1| DNA ligase [Vibrio cholerae B33] gi|229510900|ref|ZP_04400379.1| DNA ligase [Vibrio cholerae B33] gi|229518021|ref|ZP_04407465.1| DNA ligase [Vibrio cholerae RC9] gi|229608449|ref|YP_002879097.1| NAD-dependent DNA ligase LigA [Vibrio cholerae MJ-1236] gi|254291846|ref|ZP_04962629.1| DNA ligase [Vibrio cholerae AM-19226] gi|254848101|ref|ZP_05237451.1| NAD-dependent DNA ligase LigA [Vibrio cholerae MO10] gi|255744753|ref|ZP_05418704.1| DNA ligase [Vibrio cholera CIRS 101] gi|262151242|ref|ZP_06028378.1| DNA ligase [Vibrio cholerae INDRE 91/1] gi|81545212|sp|Q9KTD1|DNLJ_VIBCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|9655431|gb|AAF94133.1| DNA ligase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126519773|gb|EAZ76996.1| DNA ligase [Vibrio cholerae B33] gi|150422206|gb|EDN14170.1| DNA ligase [Vibrio cholerae AM-19226] gi|229344736|gb|EEO09710.1| DNA ligase [Vibrio cholerae RC9] gi|229350865|gb|EEO15806.1| DNA ligase [Vibrio cholerae B33] gi|229371104|gb|ACQ61527.1| DNA ligase [Vibrio cholerae MJ-1236] gi|254843806|gb|EET22220.1| NAD-dependent DNA ligase LigA [Vibrio cholerae MO10] gi|255737784|gb|EET93178.1| DNA ligase [Vibrio cholera CIRS 101] gi|262030933|gb|EEY49561.1| DNA ligase [Vibrio cholerae INDRE 91/1] Length = 669 Score = 554 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 241/711 (33%), Positives = 386/711 (54%), Gaps = 47/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + L+ L + + H YY P I D+EYD L R + A P+L + Sbjct: 1 MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELM---SSDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + V H IP LSL+ ++ +L F R+ ++ F EPK Sbjct: 58 PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192 +DG +++ YE G AA RGDG +GE+++ +R I +IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + K F ALN + G K + NPRNAA+G LR+L+ R L F+ + +G Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A Y+ +++ G P+ + + + ++Y ++ R +L Y+IDG+V KVD+ Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++N Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L + VGD V+++RAG+VIP++V +++ R +A+ F Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS V R A RC+GGL C AQ+ E LKHFVSR A ++EGLG + Sbjct: 405 PTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + PAD+F L+ ++ + G S N+ D++NK + +L Sbjct: 459 IEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAKQTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +F+++LGIR VG A +LA+++LS + Q I VP VG ++A Sbjct: 509 PKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 + F+ RN + LL++ P++ V S + K +V TG+ ++ R+ A+ Sbjct: 559 HLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S+ TD++ G+ GSKL KA +LG+++ +E+ + L+ Sbjct: 619 ALQALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669 >gi|301063517|ref|ZP_07204049.1| DNA ligase (NAD(+)) [delta proteobacterium NaphS2] gi|300442456|gb|EFK06689.1| DNA ligase (NAD(+)) [delta proteobacterium NaphS2] Length = 671 Score = 554 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 245/712 (34%), Positives = 389/712 (54%), Gaps = 50/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E++R+E+ L+Q+I YH+ YY P I D++YD L +R + P+L P+ Sbjct: 1 MEKSRQEIDELKQKIEYHNHRYYVLDDPEIPDADYDRLFQRLLELETKHPEL---RSPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+GGE +V H P LSLE ++ + + F R+ +F DD + +T+EPK Sbjct: 58 PTRKVGGETKSGFSRVIHRSPMLSLENCFDPQQILDFDKRVRKFLG--DDAPVQYTVEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-----RVLSLNIPEIIEVR 188 IDG + + Y++G+ A+ RGDG GEDV+ I+ I +P R SL IP+++EVR Sbjct: 116 IDGLAVELVYKEGRLSVASTRGDGRVGEDVTRNIKTILNVPLKLVTRKQSLPIPDLLEVR 175 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247 GEVY+ FL LN+ A +ANPRNAA+G LR+L+ R L+ F +G+G Sbjct: 176 GEVYMDVAAFLKLNEHRAARNESLFANPRNAAAGSLRQLDSRITARRRLDIFCYGVGNAE 235 Query: 248 EIFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + K E++ ++ G + +T +VS ++ R PY+IDG V KV Sbjct: 236 GLSFKTHLEVMMALQHWGLRVNRPHITICDTPDAVVSGCRHIEETRGLFPYEIDGAVIKV 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + LQ +LG ++RSPRW +++KFA Q T +L I +Q+GRTG LTPVA+L PV +GG Sbjct: 296 NRLDLQFRLGMKSRSPRWAMAYKFAPTQEMTTVLGIHVQVGRTGALTPVAQLAPVELGGV 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++ ATLHN++ I +DIR GD+V+V+RAG+VIP+VV + ++R + + Sbjct: 356 LVSRATLHNQEEIDR-----------KDIREGDQVIVQRAGDVIPEVVKTVFSKRTGNEK 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F P CP C + +++ + + C AQ ++HFVS+ +I+GL Sbjct: 405 KFLMPEACPACGTAIIKKSGEVVAR-------CPNVNCPAQVRGSIRHFVSKGGMDIDGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++ ++ ++ AD++ L R + + S NL +I K + Sbjct: 458 GEKLVNKLLDK----GLVKDEADLYELTRADLLG------LDNIKEKSAANLLGAIEKSK 507 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 SL RFI++LGIRHVG A L++ + + ++ +N +L + VG Sbjct: 508 APSLGRFIYALGIRHVGEFTAALLSERFGNIESL----------SNAGLEALSAIDGVGP 557 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 IA+++ ++ +P+N +E L K + K + + K V TGTL ++R +A Sbjct: 558 QIAESVFNYFADPQNRALLERLFKAGVTPVSTRLKPADTPVAGKTFVLTGTLASVKRSEA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +E +TQ G + +SR TD ++ GD PGSKL+KA++L V I+NE++FL LL Sbjct: 618 KEMITQKGGKAGSSVSRNTDYLVAGDEPGSKLQKARELDVAILNEKEFLDLL 669 >gi|145298235|ref|YP_001141076.1| NAD-dependent DNA ligase [Aeromonas salmonicida subsp. salmonicida A449] gi|166215387|sp|A4SKA6|DNLJ_AERS4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|142851007|gb|ABO89328.1| NAD-dependent DNA ligase [Aeromonas salmonicida subsp. salmonicida A449] Length = 664 Score = 554 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 244/708 (34%), Positives = 384/708 (54%), Gaps = 47/708 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + L ++ + YY P + D+EYD L R AI P+L S Sbjct: 1 MSETLSRHRQLCDLLTEYGHQYYVLDNPTVPDAEYDRLMRELIAIESEHPELKTSA---S 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG+ + +V H IP LSL+ +++ E+L+ F R+ +++ S F EPK Sbjct: 58 PSVRVGGQPLTAFRQVRHEIPMLSLDNVFSSEELQAFEQRMKDRLKREI--SFTFCCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192 +DG +++ Y G+ V AA RGDG +GE+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYVDGQLVQAATRGDGATGEEITENVRTIKAIPLSLRGSDWPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFA 251 + K F A+N + +A G K + NPRNAA+G LR+L+ +R LNF+ +G+G + Sbjct: 176 MPKAGFEAMNAKALAAGEKVFVNPRNAAAGSLRQLDSRITASRPLNFYAYGVGVGGDQLG 235 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + L +++ G P++ V+ G ++++++ + R L Y+IDG+VYKVD L Sbjct: 236 DSHFGRLCQLKAWGLPMSPEVKLKEGAAGCQAFHDDILARRGELAYEIDGVVYKVDAIPL 295 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG AR+PRW +HKF ++ T L +++ Q+GRTG +TPVA+L+PV +GG I+NA Sbjct: 296 QEELGFVARAPRWATAHKFPAQEEMTLLENVEFQVGRTGAVTPVAKLKPVFVGGVTISNA 355 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I+ L + +GD V+V+RAG+VIP++V ++ +R DA+ FP Sbjct: 356 TLHNADEIERL-----------GVMIGDTVIVRRAGDVIPQIVAVVEAQRPVDAREILFP 404 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+C S + R RC+GGL C AQ+ E +KHF +R A +++GLG + + Sbjct: 405 TQCPVCGSALERLEGE------VVTRCSGGLFCEAQRKEAIKHFAARRAMDVDGLGDKIV 458 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + ++ PAD+F+L Q + G S NL +I+ R+ +L Sbjct: 459 EQLVDK----GLVKTPADLFSLNAIQLAG------LERMGQKSALNLVAAIDAARSTTLP 508 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RF+F+LGIR VG A +LA ++L+ L+ V VGDI+A+ Sbjct: 509 RFLFALGIREVGEATALNLANHFLTLDALRAA----------SVEQLLEVADVGDIVAKH 558 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 + F + P NI L + ++ K V TGTL + R+ A+ + Sbjct: 559 VYYFLRQPHNIEV---LAAGIHWPAIEKKEASEQPFAGKTFVLTGTLNLLSRNDAKAALQ 615 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA V+ +S KTD+++ G+ GSKL KAQ+LG+ I EEQ LQ Sbjct: 616 ALGAKVAGSVSAKTDVLVAGEAAGSKLAKAQELGITIWTEEQLQAALQ 663 >gi|229523238|ref|ZP_04412645.1| DNA ligase [Vibrio cholerae TM 11079-80] gi|229339601|gb|EEO04616.1| DNA ligase [Vibrio cholerae TM 11079-80] Length = 669 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 241/711 (33%), Positives = 386/711 (54%), Gaps = 47/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + L+ L + + H YY P I D+EYD L R + A P+L + Sbjct: 1 MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELM---SSDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + V H IP LSL+ ++ +L F R+ ++ F EPK Sbjct: 58 PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192 +DG +++ Y+ G AA RGDG +GE+++ +R I +IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYQNGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + K F ALN + G K + NPRNAA+G LR+L+ R L F+ + +G Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A Y+ +++ G P+ + + + ++Y ++ R +L Y+IDG+V KVD+ Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLVYEIDGVVIKVDDIQ 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++N Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L + VGD V+++RAG+VIP++V +++ R +A+ F Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS V R A RC+GGL C AQ+ E LKHFVSR A ++EGLG + Sbjct: 405 PTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + PAD+F L+ ++ + G S N+ D++NK + +L Sbjct: 459 IEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAKQTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +F+++LGIR VG A +LA+++LS + Q I VP VG ++A Sbjct: 509 PKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 + F+ RN + LL++ P++ V S + K +V TG+ ++ R+ A+ Sbjct: 559 HLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S+ TDI+ G+ GSKL KA +LG+++ +E+ + L+ Sbjct: 619 ALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669 >gi|294497111|ref|YP_003560811.1| DNA ligase, NAD-dependent [Bacillus megaterium QM B1551] gi|294347048|gb|ADE67377.1| DNA ligase, NAD-dependent [Bacillus megaterium QM B1551] Length = 668 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 241/715 (33%), Positives = 388/715 (54%), Gaps = 53/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E A+ + L ++ + YY +P + D+EYD L I +FP+L + Sbjct: 1 MEFETAKSRVQELRDLLNQYGYEYYVLDQPSVPDAEYDKLMNELIEIEESFPELKTA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +IGG++ + KV H LSL +N EDLR F R+ + + + E Sbjct: 58 DSPTQRIGGQVLDAFEKVQHQTSMLSLGNAFNEEDLRDFDRRVRQAVG----DEFSYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G V A RGDG +GE+++ ++ I +IP + + +EVRGE Sbjct: 114 LKIDGLAVSLRYEDGYLVLGATRGDGTTGENITENLKTIRSIPLRIKEPLS--MEVRGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 ++ + F ALN+ + P+ANPRNAA+G LR+L+P R L+ FV+ + T E+ Sbjct: 172 FMPRKSFEALNEAKMERDEVPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYAMTDTGELE 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N + T +++Y ++ R L YDIDG+V KVD F Sbjct: 232 IDSHSESLNLLDELGFKTNRERQTCETIDDVIAYIESWQTQRPELSYDIDGIVVKVDSFD 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q +LG A+SPRW I++KF ++ T+L++I++ +GRTG++TP A LEPV + G + Sbjct: 292 QQAELGTTAKSPRWAIAYKFPAEEVVTKLVNIELTVGRTGVITPTAILEPVQVAGTTVQR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I +R + Q F+ Sbjct: 352 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIEEKRTGEEQEFTM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC +C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 PTHCPECESELVRLEGE------VALRCINP-SCPAQIREGLIHFVSRNAMNIDGLGEKV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ + I+ ADI+TL ++Q + G+ S NL +I + SL Sbjct: 454 ISQLFREQ----LIKDVADIYTLTKQQLI------ELERMGEKSADNLIAAIGASKKNSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ A++LA+++ + + + L+ + +G +A Sbjct: 504 ERLLFGLGIRHVGAKAAKTLAQHFETIDKLTKAT----------YDELVAINEIGAKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 AIV ++ + L + + +NV S K +V TG L+++ R++ Sbjct: 554 AIVAYFTQEEVQELIHELKEYGVNLTYKGPKLVSVENVDSVFAGKTVVLTGKLEQLSRNE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ + LG V+ +S+KTD+++ G+ GSKL KA +L +++ +E + L L + Sbjct: 614 AKAQIEALGGKVTGSVSKKTDLVVAGEEAGSKLTKANELEIEVWDEARLLTELNK 668 >gi|296046585|gb|ADG86434.1| NAD-dependent DNA ligase [Francisella novicida] Length = 670 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 248/717 (34%), Positives = 388/717 (54%), Gaps = 53/717 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + E+ L I+ H+ YY P I D+EYD L +R + +P Sbjct: 1 MTP--IQTEMDQLTHTINQHNIRYYVDDAPSIPDAEYDRLIKRLTELERDYPQFK---SV 55 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG ++TH P LSL+ + D F RI +S+ + E Sbjct: 56 DSPTQRVGGIALQKFAQITHLKPMLSLDNAFEQADFAAFNKRITDKV-----DSVDYVCE 110 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 PK+DG ++I Y G AA RGDG GED++A +R I +IP L P+++EVRGE Sbjct: 111 PKLDGLAVSITYRFGVLERAATRGDGSVGEDITANVRTIRSIPLKLRGEGFPDLVEVRGE 170 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V++ K F ALN I+ G K + NPRNAA+G LR+L+ +R L F+ + LG Sbjct: 171 VFMPKAAFEALNQRQISKGDKVFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEGE 230 Query: 250 FAKGQYEML---QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 Q +++ G PV++ V+ + + +YY ++ + RS L Y+IDG+V KV Sbjct: 231 SQPMQTSHYGQLTQLQQWGIPVSSEVKVTDLLEKVYAYYADIMARRSALEYEIDGVVIKV 290 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ + Q+ LG A++PRW I++KF ++ T L +D Q+GRTG +TPVARL+P+ +GG Sbjct: 291 NDIAKQQTLGFVAKAPRWAIAYKFPAQEEMTLLESVDFQVGRTGAVTPVARLKPIFVGGV 350 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++NATLHN D I L +++GD V+++RAG+VIP++V I+ +R DAQ Sbjct: 351 TVSNATLHNADEIARL-----------GVKIGDTVIIRRAGDVIPQIVAIVPEKRPDDAQ 399 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 FP CP+CQS V R A RC+GGL C AQ+ E +KHF SR A NI+G+ Sbjct: 400 DIIFPLHCPVCQSIVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALNIDGM 453 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ E ++ PAD+F+L + I + S TN+ +I + Sbjct: 454 GDKIVEQLIDKE----LVKTPADLFSLTA------SSITMLDRMAMKSATNIVAAIKHAK 503 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RF++SLGIR VG A +LA+++ ++ L+ V VGD Sbjct: 504 ATTLARFLYSLGIREVGEATAANLAQHFAEFERIRTA----------SVEQLLEVADVGD 553 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHK 665 I+A+ I +F+ P NI +E LL+ + + S ++ + V TGTL ++ R+ Sbjct: 554 IVAKHIRQFFAQPHNIEVIEQLLEAGITWPVIEQADESQLSLKGQTWVLTGTLTQLNRND 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A+ + LGA V+ +S+ TD ++ G+ GSKL KA++LGVK+++E+ + LL N Sbjct: 614 AKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAEELGVKVIDEQALMDLLNAAN 670 >gi|27262356|gb|AAN87459.1| NAD-dependent DNA ligase [Heliobacillus mobilis] Length = 677 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 236/708 (33%), Positives = 373/708 (52%), Gaps = 48/708 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A + L + I +H+ YY P I D++YDAL R AI +P+L + + P Sbjct: 16 EAEVRVKELREIIRHHEYRYYVLDAPEITDADYDALMRELQAIEDTYPELVEA---DSPT 72 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG+ + V H +P LSL ++ DLR+F R + + + +EPKID Sbjct: 73 RRVGGQPLAAFNSVRHRVPLLSLANAFDEHDLREFDRRARERAGR----DLTYVVEPKID 128 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + YE+G+FV A RGDG +GED++ ++ I TIP L +++VRGE Y+ K Sbjct: 129 GLTVVLTYEQGRFVRGATRGDGETGEDITENLKTIRTIPLRL-KTDLPVLDVRGEAYLPK 187 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 F LN+E G +ANPRNAA+G LR+L+P +R L F + + A+ Q Sbjct: 188 GAFATLNEEREERGEPVFANPRNAAAGSLRQLDPKVTASRPLRAFFYNILLLEGAEAQEQ 247 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 + L+ + G PVN + + +++Y R LP++IDG+V KV+E ++ Sbjct: 248 RQALELIEQWGLPVNKERKFCLSIEEVIAYCRYWTEHRHDLPFEIDGMVVKVNELDEYER 307 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++SPR+ I+ KF +QA T++ I +++GRTG++TP A LEPV + G ++ ATLH Sbjct: 308 LGVTSKSPRYAIAFKFPAEQAVTQVRSITVKVGRTGVITPTAELEPVRVAGTTVSRATLH 367 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED I+ +DI VGD V++++AG++IP+VV ++ R + QPFS P C Sbjct: 368 NEDIIR-----------EKDIHVGDYVIIQKAGDIIPEVVSVLKERRTGEEQPFSMPQAC 416 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S R A RCT C AQ E L H+ SRDA NIEGLG ++ Sbjct: 417 PECGSPASRLEGE------VALRCTSS-TCPAQAKEGLIHYASRDAMNIEGLGPAIVNLL 469 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + + + PAD++ L Q + G S NL +I + ++ L F Sbjct: 470 WDT----GLVHNPADLYDLTVDQV------APLERMGKKSAANLIAAIEQSKSRGLAAFT 519 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LG+R VG A++LA ++ S + L +P +G +A ++ Sbjct: 520 FALGLRLVGQTAAKTLASHFGSMEKLMAATQ----------EELQAIPEIGPKMADSLKN 569 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEK-NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 ++ P N+ + L+++ + + + K +V TGTLQ + R +AQ + Sbjct: 570 YFSIPANVEMILRLVEKGVQMNAQQSTVDSPQTLAGKMIVLTGTLQSMDRREAQRLLEAR 629 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 GA +S+ +S+KT ++I G+ GSKLEKA +L V ++ EE FL L+ + Sbjct: 630 GAKISSSVSKKTSMVIAGEEAGSKLEKALELKVPVLREEDFLKLIDHH 677 >gi|293603951|ref|ZP_06686365.1| NAD-dependent DNA ligase LigA [Achromobacter piechaudii ATCC 43553] gi|292817644|gb|EFF76711.1| NAD-dependent DNA ligase LigA [Achromobacter piechaudii ATCC 43553] Length = 700 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 259/724 (35%), Positives = 392/724 (54%), Gaps = 68/724 (9%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 + L E+ H+ YY Y +P I D+EYD L R+ +A+ P+L P P ++G Sbjct: 15 AHLRAELEQHNVRYYVYDEPSISDAEYDGLMRQLEALEAEHPELI---TPESPTQRVGAA 71 Query: 82 MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ----KKDDNSIFFTLEPKIDGT 137 + V+H++P LSL + E++ F R+ + + E K+DG Sbjct: 72 PVSAFGSVSHAVPMLSLNNAFAEEEVVAFDRRVTDTLRGAGLLGPAQQADYFCELKLDGL 131 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++RYE G+ V AA RGDG +GEDV++ IR I IP L P+++EVRGEV +++ D Sbjct: 132 AISLRYEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLKGAAPKVLEVRGEVLMNRAD 191 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS--------- 247 F LN+ K + NPRNAA+G LR+L+P R L FF +G G+ Sbjct: 192 FEKLNEAQARRDEKIFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGEVQGLPGKQSGL 251 Query: 248 ------------EIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRST 294 ++ K ML + LG PVN +A G++++Y ++ +R++ Sbjct: 252 FDEATAGAGQASQLPEKSHGAMLAWLHELGLPVNLKHNDRATGAEGLMAFYAKVGELRAS 311 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 LPYDIDG+VYKVD QK LG AR+PR+ ++HKFA ++A+T LLDI++Q+GRTG +TP Sbjct: 312 LPYDIDGVVYKVDSLPAQKVLGFVARAPRFALAHKFAAEEATTTLLDIEVQVGRTGAITP 371 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VARL+PV +GG +TNATLHNED I+ +D+R GD V+V+RAG+VIP+V+ Sbjct: 372 VARLKPVFVGGVTVTNATLHNEDEIRR-----------KDVRKGDTVIVRRAGDVIPEVL 420 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 ++ +R DAQ F P+ CP+C S + R + RCTGGL C+AQ+ + L H Sbjct: 421 GPVLEKRPDDAQQFVMPTACPVCGSAIERLEDET------IARCTGGLFCAAQRKQTLWH 474 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 SR A +IEGLG++ +D S ++ AD+++L+ ++ + G S Sbjct: 475 AASRKALDIEGLGEKLVDQLVDS----GRVKTLADLYSLR------PLELVGLDRMGQKS 524 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 NL +I+K R +L R +F+LGIRHVG AR +A+++ S D Sbjct: 525 ADNLVAAIDKARAPALNRLLFALGIRHVGETTARDVARHFGSIDAIMDA----------D 574 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654 +L VP VG ++A +I F+ N +E L + + + + K V Sbjct: 575 EEALSSVPDVGPVVAASIRRFFAEQHNRDVIEQLKAQGVNPVAE-AAPQGTTLAGKTFVL 633 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TGTL R +A ++ G V+ +S+KT ++ G+ GSKL KAQ+LGV +++E+ Sbjct: 634 TGTLPNWTREEASMHIQAAGGKVTGSVSKKTAYLVAGEEAGSKLTKAQELGVTVLDEDAL 693 Query: 715 LFLL 718 LL Sbjct: 694 KALL 697 >gi|126649600|ref|ZP_01721841.1| NAD-dependent DNA ligase LigA [Bacillus sp. B14905] gi|126593925|gb|EAZ87848.1| NAD-dependent DNA ligase LigA [Bacillus sp. B14905] Length = 667 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 236/712 (33%), Positives = 377/712 (52%), Gaps = 53/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + + ++ L + + + YY KP++ DS YD L A+ A P L P+ Sbjct: 1 MNEIEQRIAELNKLLHEYGYAYYVLDKPVVADSVYDQLLHELIALEEANPSLIF---PDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + KVTH P LSL +N DL++F ++ + + + E K Sbjct: 58 PTQRVGGTVVEGFKKVTHDYPMLSLSNAFNEADLQEFDRKVRQAIG----DHFSYVCELK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I+++YE G FV A RGDG GE+++A ++ I IP L I IEVRGE Y+ Sbjct: 114 IDGLAISLKYENGVFVQGATRGDGVVGEEITANLKTIHAIPLRLKEPI--TIEVRGEAYM 171 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFA 251 K F LN + G + +ANPRNAA+G LR+L+P + F G Sbjct: 172 PKKSFEKLNAQRADNGEELFANPRNAAAGSLRQLDPKIAASRQLSTFIYAIGGDGEVYGI 231 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 G EML + LGFP N ++ +T ++++ R L Y+IDG+V KVD ++ Sbjct: 232 DGHAEMLDYLEDLGFPSNKERQRCSTIEEVMAFIEHWTEHRPHLAYEIDGIVIKVDRYAQ 291 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG A+SPRW I++KF ++ T LLDID+ +GRTG++TP A L PV + G + A Sbjct: 292 QDELGYTAKSPRWAIAYKFPAEEVVTTLLDIDLTVGRTGVVTPTAILTPVQVAGTTVQRA 351 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHNED I+ +DIR+GD V++++AG++IP+VV +++ +R ++ PF P Sbjct: 352 SLHNEDLIR-----------EKDIRLGDTVIIRKAGDIIPQVVGVLIEQRPENSVPFEMP 400 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C S ++R A RC AC AQ E +K+FVSR+A NI+GLG + + Sbjct: 401 QNCPVCDSELIRIEGE------VALRCVNP-ACFAQIAESIKYFVSRNAMNIDGLGDKVV 453 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + + A I +D++ L Q + G+ S TNL ++I + S+E Sbjct: 454 EQLLR----ADLIHDVSDLYHLTIEQLV------ELERMGEKSATNLVNAIQASKENSME 503 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R + LGIRHVG + A+ +++ + S + + L+ + +GD +A + Sbjct: 504 RLLIGLGIRHVGEKAAKIVSEQFGSMEAVMAATD----------EQLVAIYEIGDKMASS 553 Query: 612 IVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +VE++ N +E L + + K +V TG L+++ R++A+ Sbjct: 554 LVEYFSNDDAGAVIERLAEVGVNMTFKGKKVEVVVGDNPFAGKTIVLTGKLEQLTRNEAK 613 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + +LG V+ +S+KTD++I G++ GSKL KA+QLG+++ NEE + L Sbjct: 614 AKIEELGGTVTGSVSKKTDLVIAGEDAGSKLAKAEQLGIEVWNEENLIEQLN 665 >gi|77165170|ref|YP_343695.1| DNA ligase (NAD+) [Nitrosococcus oceani ATCC 19707] gi|254433594|ref|ZP_05047102.1| DNA ligase, NAD-dependent [Nitrosococcus oceani AFC27] gi|123730661|sp|Q3JAI1|DNLJ_NITOC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|76883484|gb|ABA58165.1| DNA ligase (NAD+) [Nitrosococcus oceani ATCC 19707] gi|207089927|gb|EDZ67198.1| DNA ligase, NAD-dependent [Nitrosococcus oceani AFC27] Length = 675 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 251/708 (35%), Positives = 388/708 (54%), Gaps = 47/708 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A++ + +L++ I+ +D YY + P++ DSEYD L R A+ +P+L + P Sbjct: 7 AKERIQALKELINNYDYAYYVVNNPLVPDSEYDRLIRELQALEENYPELITL---DSPTQ 63 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G + SL ++ H IP LSL ++ +L F R+ + + + EPK+DG Sbjct: 64 RVGAKPVKSLGEIKHEIPMLSLNNAFHEGELADFHRRVKTRLGIE---RVDYAAEPKLDG 120 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 +++ Y+ G V A RGDG +GED++ IR IPT+ L IP ++EVRGEVY+ + Sbjct: 121 LAVSLLYQDGVLVQGATRGDGITGEDITHNIRTIPTVSLRLRGEKIPSLLEVRGEVYMPR 180 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-AKG 253 F N E IA G KP+ NPRNAA+G LR+L+P R L F +G+G+ Sbjct: 181 QGFEQFNREQIAKGEKPFVNPRNAAAGSLRQLDPRITANRPLALFCYGVGQVEGGILPDR 240 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E+L +++ G + G YY + +R LPY+IDG+V+KVD Q+ Sbjct: 241 HSEILFQLKQWGLRILPYSEVVEELAGCEKYYQHLLDLRDKLPYEIDGVVFKVDYLDQQQ 300 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG AR+PRW +++KF ++ T++LDI++Q+GRTG LTPVARL+PV +GG ++ ATL Sbjct: 301 ILGSLARAPRWALAYKFPAQEELTQILDIEVQVGRTGALTPVARLQPVFVGGVTVSKATL 360 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNE I+ +DIR+GD V V+RAG+VIP++V +I+ R PD++PF P Sbjct: 361 HNEGEIQR-----------KDIRIGDTVYVRRAGDVIPEIVKVIMERRLPDSRPFQMPRQ 409 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S +V++ A RC+GGL C AQ+ E +KHF R A +I GLG + ++ Sbjct: 410 CPVCGSEIVKEEG------GAVARCSGGLYCPAQRKEAIKHFAGRRAMDINGLGDKLVEQ 463 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 K ++ AD++ L + Q + G S TNL ++I + ++ +L RF Sbjct: 464 LTKQ----GLLKDVADLYGLTKEQLAG------LERMGQKSATNLINAIQQSKHTTLPRF 513 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +++LGIR VG A+ LAK + S + A L +V +G I+A I Sbjct: 514 LYALGIREVGEATAQVLAKEFGSLEALASVSE----------ERLQQVTDIGPIVAAHIA 563 Query: 614 EFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F++ P N ++ L K + + + + V TGTL+ + R +A+E + Sbjct: 564 AFFRQPHNRQIIQGLQKAGVCWPEVEDKVQIVQPLLGRTFVLTGTLESMTREQAKERLQA 623 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LG V+ +S TD +I+G NPGSKL KA+ LG+ I++E F L Sbjct: 624 LGGKVNGSVSPHTDYLIIGANPGSKLVKARNLGITILDETYFRNFLDD 671 >gi|114563631|ref|YP_751144.1| DNA ligase, NAD-dependent [Shewanella frigidimarina NCIMB 400] gi|122299383|sp|Q080K9|DNLJ_SHEFN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|114334924|gb|ABI72306.1| DNA ligase, NAD-dependent [Shewanella frigidimarina NCIMB 400] Length = 670 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 244/715 (34%), Positives = 388/715 (54%), Gaps = 51/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + E+ L I+ H+ YY P I D+EYD L +R + +P + Sbjct: 1 MHAIQTEMDQLTHTINQHNIRYYVDDAPSIPDAEYDRLIKRLTELEGDYPQFK---SVDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG ++TH P LSL+ + D F RI +++ + EPK Sbjct: 58 PTQRVGGIALQKFAQITHLKPMLSLDNAFEQADFAAFNKRITDKV-----DNVDYVCEPK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG ++I Y G AA RGDG GED++A +R I +IP L P+++EVRGEV+ Sbjct: 113 LDGLAVSITYRFGVLERAATRGDGSVGEDITANVRTIRSIPLKLRGEGFPDLVEVRGEVF 172 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + K F LN I+ G K + NPRNAA+G LR+L+ +R L F+ + LG Sbjct: 173 MPKAAFEVLNQRQISKGDKVFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEGESQ 232 Query: 252 KGQYEML---QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q +++ G PV++ V+ ++ + +YY ++ + RS L Y+IDG+V KV++ Sbjct: 233 PMQTSHYGQLTQLQQWGVPVSSEVKVTDSLEKVYAYYADIMARRSALEYEIDGVVIKVND 292 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q+ LG A++PRW I++KF ++ T L +D Q+GRTG +TPVARL+P+ +GG + Sbjct: 293 IAKQQTLGFVAKAPRWAIAYKFPAQEEMTLLESVDFQVGRTGAVTPVARLKPIFVGGVTV 352 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I L +++GD V+++RAG+VIP++V I+ +R DAQ Sbjct: 353 SNATLHNADEIARL-----------GVKIGDTVIIRRAGDVIPQIVAIVPEKRPDDAQDI 401 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP+CQS V R A RC+GGL C AQ+ E +KHF SR A NI+G+G Sbjct: 402 IFPQHCPVCQSIVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALNIDGMGD 455 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E ++ PAD+F+L + + + S TN+ +I + + Sbjct: 456 KIVEQLIDKE----LVKTPADLFSLTA------SSVTMLDRMAMKSATNIVAAIKQAKTT 505 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF++SLGIR VG A +LA+++ ++ L+ V VGDI+ Sbjct: 506 TLARFLYSLGIREVGEATAANLAQHFTEFERIRTA----------SVEQLLEVADVGDIV 555 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQ 667 A+ I +F+ P NI ++ LL+ + + S ++ + V TGTL ++ R+ A+ Sbjct: 556 AKHIRQFFSQPHNIEVIDQLLEAGITWPVIEQADESQLSLKGQTWVLTGTLTQLNRNDAK 615 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + LGA V+ +S+ TD ++ G+ GSKL KA++LGVK+++E+ + LL N Sbjct: 616 AQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAEELGVKVIDEQALMDLLNAAN 670 >gi|148360390|ref|YP_001251597.1| DNA ligase [Legionella pneumophila str. Corby] gi|166215817|sp|A5IFV1|DNLJ_LEGPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148282163|gb|ABQ56251.1| DNA ligase [Legionella pneumophila str. Corby] Length = 673 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 247/713 (34%), Positives = 382/713 (53%), Gaps = 46/713 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + ++ + +L+++I +D YY +P++ D+EYD + +P P Sbjct: 1 MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++ G + + V H LSL ++ ++L+ FI R + + + F E Sbjct: 58 DSPTQRVSGTPSDAFMPVAHKQAMLSLSNVFTTDELKAFIKRAIEKLDE-PNQQLVFACE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG + + YE G +AA RGDG GE+++A I+ I ++P N P++IEVRGE Sbjct: 117 PKLDGLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGE 176 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG-KTSE 248 VYI K DF A N +G K +ANPRNAA+G LR+LNP +R L + +G+G Sbjct: 177 VYIPKADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDY 236 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E L ++ GF V+ R+A G + YY M + R+ LP++IDG+VYK+D Sbjct: 237 KLPNSHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDS 296 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 SLQ+QLG +R+PR+ +HKF + TRL+ +D Q+GRTG +TPVARLEPV++GG + Sbjct: 297 ISLQQQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTV 356 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I +DI +GD V+++RAG+VIP+VV +I+ +R +A+ Sbjct: 357 SNATLHNFDEITR-----------KDIHIGDTVIIRRAGDVIPEVVSVILEKRPANARKI 405 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP+C S VVR+ + A RC GGL C AQ + HF SR A IEGLG Sbjct: 406 ELPKNCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGS 459 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 +D + AD++ L + N+ G+ S NL ++ K + Sbjct: 460 VLIDQLVDE----GIVHHLADLYEL------DLQTLANLPRMGEKSAKNLLSALEKSKKT 509 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + RF+++LGIR +G AR LA++Y ++ L+ + +G + Sbjct: 510 TFNRFLYALGIREIGEAGARVLAEHYCDVESLKAAT----------IEELMTLNDIGPVA 559 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A IV F+ N+ ++ LL+ P + + N + K +V TGTL + R +A Sbjct: 560 ASHIVHFFAQAHNLEVIDRLLELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSTMGREEA 619 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + LGA VS +S KTD ++ G GSKL KA +LGV I+ E++FL + Sbjct: 620 KAKLLALGAKVSGSVSSKTDYLVAGSEAGSKLVKATELGVAIIEEDEFLKWVN 672 >gi|296106543|ref|YP_003618243.1| DNA ligase (NAD ) [Legionella pneumophila 2300/99 Alcoy] gi|295648444|gb|ADG24291.1| DNA ligase (NAD ) [Legionella pneumophila 2300/99 Alcoy] Length = 673 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 247/713 (34%), Positives = 382/713 (53%), Gaps = 46/713 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + ++ + +L+++I +D YY +P++ D+EYD + +P P Sbjct: 1 MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++ G + + V H LSL ++ ++L+ FI R + + + F E Sbjct: 58 DSPTQRVSGTPSDAFMPVAHKQAMLSLSNVFTTDELKAFIKRAIEKLDE-PNQQLVFACE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG + + YE G +AA RGDG GE+++A I+ I ++P N P++IEVRGE Sbjct: 117 PKLDGLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGE 176 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG-KTSE 248 VYI K DF A N +G K +ANPRNAA+G LR+LNP +R L + +G+G Sbjct: 177 VYIPKADFEAYNARARELGEKIFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDY 236 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E L ++ GF V+ R+A G + YY M + R+ LP++IDG+VYK+D Sbjct: 237 KLPNSHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDS 296 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 SLQ+QLG +R+PR+ +HKF + TRL+ +D Q+GRTG +TPVARLEPV++GG + Sbjct: 297 ISLQQQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTV 356 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I +DI +GD V+++RAG+VIP+VV +I+ +R +A+ Sbjct: 357 SNATLHNFDEITR-----------KDIHIGDTVIIRRAGDVIPEVVSVILEKRPANARKI 405 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP+C S VVR+ + A RC GGL C AQ + HF SR A IEGLG Sbjct: 406 ELPKNCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGS 459 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 +D + AD++ L + N+ G+ S NL ++ K + Sbjct: 460 VLIDQLVDE----GIVHHLADLYEL------DLQTLANLPRMGEKSAKNLLSALEKSKKT 509 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + RF+++LGIR +G AR LA++Y ++ L+ + +G + Sbjct: 510 TFNRFLYALGIREIGEAGARVLAEHYCDVESLKAAT----------IEELMTLNDIGPVA 559 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A IV F+ N+ ++ LL+ P + + N + K +V TGTL + R +A Sbjct: 560 ASHIVHFFAQAHNLEVIDRLLELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSTMGREEA 619 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + LGA VS +S KTD ++ G GSKL KA +LGV I+ E++FL + Sbjct: 620 KAKLLALGAKVSGSVSSKTDYLVAGSEAGSKLVKATELGVAIIEEDEFLKWVN 672 >gi|15642875|ref|NP_227916.1| DNA ligase [Thermotoga maritima MSB8] gi|7674016|sp|Q9WXV5|DNLJ_THEMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|4980590|gb|AAD35194.1|AE001696_8 DNA ligase [Thermotoga maritima MSB8] Length = 688 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 254/721 (35%), Positives = 390/721 (54%), Gaps = 54/721 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M +R++ ++ +E+ L +EI YH+ YY + P+I D EYD L RR + Sbjct: 1 MSERKIP-------KEVIEEVERLREEIEYHNYRYYVLNDPVITDEEYDRLMRRLIELER 53 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 +P+L P+ P ++GG++ V HS+P LSL+ +N E++ +F R+ + Q+ Sbjct: 54 MYPELV---TPDSPTQRVGGKVLEGFKTVKHSVPMLSLDNTYNEEEILEFDRRVKKALQE 110 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 + + E KIDG I +RYE G+FV A RGDG GEDVS ++ + +IP L Sbjct: 111 A---EVEYVAELKIDGVSIALRYENGRFVLGATRGDGIEGEDVSENVKTVRSIPLRLRKP 167 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 + IEVRGE+Y+ ++F LNDE G P+ANPRNAA+G LR+LN R L+ F Sbjct: 168 V--TIEVRGEIYMPVDEFKRLNDEREEEGLPPFANPRNAAAGTLRQLNTALVAARRLDSF 225 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 ++ + K Q+E LQ ++ LGF VN R ++ Y+ E K + L Y + Sbjct: 226 IYYVVHPENYGLKTQWEALQFLKELGFKVNPHSRLCKNIQEVIDYWKEWKERKRELDYWV 285 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KV+ F Q+ LGE +++PRW I+ KF +QA TR+LD+ IQ+GRTG+LTPVA LE Sbjct: 286 DGVVVKVNRFDFQRILGETSKAPRWAIAFKFPAEQARTRVLDVTIQVGRTGVLTPVAELE 345 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G ++ A+LHN +YI+ +DIR+GD V V++AG +IP++V I Sbjct: 346 PVQLAGTIVKRASLHNFEYIR-----------EKDIRIGDYVFVEKAGGIIPQIVKSIPE 394 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R + + P CP+C +V K A RC C A+ L+ VSR+ Sbjct: 395 LRTGNEKEIKPPDKCPVCGGKVG-----KLNPDEVAIRCLNP-HCPAKLKRALRTLVSRE 448 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG++ +D A I+ ADIF L + G G ++ + Sbjct: 449 ALDIEGLGEKLIDRLVD----AGLIKDIADIFYLTPFDL-----AQLGPGIGQRTIAKIL 499 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 I + + L + I LGI VG + A+ LA+++ S + A + +L Sbjct: 500 QEIEEAKKRPLHKLITGLGIPMVGQKTAKILAEHFKSLEAIADA----------SYETLK 549 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 +P +G IA++IVE+++NP+ +E L K + + + TGTL+ Sbjct: 550 DIPGIGPEIAKSIVEYFRNPKTREIIEKLKKAGV-KLEEKVVKLD-ILRGLTFAVTGTLK 607 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R + E++ +LGA V +SR TD +IVG+NPGSK E+A+ L VK+M+EE+FL ++ Sbjct: 608 NFTREEIIEFLEKLGAKVVNSVSRNTDYLIVGENPGSKYERAKMLKVKMMSEEEFLEFVR 667 Query: 720 Q 720 + Sbjct: 668 K 668 >gi|297578580|ref|ZP_06940508.1| DNA ligase [Vibrio cholerae RC385] gi|297536174|gb|EFH75007.1| DNA ligase [Vibrio cholerae RC385] Length = 669 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 386/711 (54%), Gaps = 47/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++L+ L Q + H YY P I D+EYD L R + A P+L + Sbjct: 1 MSNVEQKLTELRQILHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELM---SSDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + V H IP LSL+ ++ +L F R+ ++ F EPK Sbjct: 58 PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDSELDSFYRRMTDRIPAVQHSA--FCCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192 +DG +++ YE G AA RGDG +GE+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKAIPLRLQGADFPTRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + K F ALN + G K + NPRNAA+G LR+L+ R L F+ + +G Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A Y+ +++ G P+ + + + ++Y ++ R +L Y+IDG+V KVD+ Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++N Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L + VGD V+++RAG+VIP++V +++ R +A+ F Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS V R A RC+GGL C AQ+ E LKHFVSR A ++EGLG + Sbjct: 405 PTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + PAD+F L+ ++ + G S N+ D++NK + +L Sbjct: 459 IEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAKQTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +F+++LGIR VG A +LA+++LS + Q I VP VG ++A Sbjct: 509 PKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 + F+ RN + LL++ P++ V S + K +V TG+ ++ R+ A+ Sbjct: 559 HLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S+ TDI+ G+ GSKL KA +LG+++ +E+ + L+ Sbjct: 619 ALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669 >gi|228472685|ref|ZP_04057445.1| DNA ligase, NAD-dependent [Capnocytophaga gingivalis ATCC 33624] gi|228276098|gb|EEK14854.1| DNA ligase, NAD-dependent [Capnocytophaga gingivalis ATCC 33624] Length = 666 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 221/709 (31%), Positives = 370/709 (52%), Gaps = 46/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ +++ +L +E++ H+ YY P I D E+D + + +P DPN Sbjct: 1 MDSILQQIEALRKELNEHNYNYYVLDTPSISDYEFDQKLKALQDLEAQYPQYK---DPNS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE+ + VTH SL+ ++ E++ ++ R+ + + + F E K Sbjct: 58 PTVRVGGEITKNFPTVTHEFRMYSLDNSYSKEEVEEWEKRVLKGLG---TDKVSFVCELK 114 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 DG I + Y+ G+ V A RGDG G++++A +R I ++P L + P+ +RGE+ I Sbjct: 115 YDGASIDLTYDHGQLVQATTRGDGVQGDEITANVRTIRSVPLTLKGDYPDHFHIRGEIII 174 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 K F +N++ IA G PY NPRN ASG L+ + ++ + + + Sbjct: 175 LKEGFKKMNEQRIAEGEDPYMNPRNTASGSLKLQDTAEVAKRPLDCLLYYVVGDNLPVDN 234 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q++ LQK R GF V + + ++ ++ + N + R LPY+ DG+V KV+++ Q+ Sbjct: 235 QFDSLQKARDWGFKVPSQSKLCHSTDEVMEFINYWDTRRHDLPYETDGVVIKVNDYQAQQ 294 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG ++SPRW I++KF ++ +T L I Q+GRTG +TPVA L PV + G ++ A+L Sbjct: 295 ELGYTSKSPRWAIAYKFKAEEVTTSLESISYQVGRTGAITPVANLSPVLLAGTIVKRASL 354 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I L + +GD+V V++ GE+IPK+ + + RH A P +F + Sbjct: 355 HNADQIAKL-----------GLHIGDQVFVEKGGEIIPKITGVRLEARHEQATPVTFITH 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S +VR+ A H C C Q R++HF+SR A NIEGLG + ++ Sbjct: 404 CPECGSELVRNEGE------AQHYCPNAYGCPPQITGRIQHFISRKAMNIEGLGSETVEL 457 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F+ A I AD++ L+ Q + + G S N+ I K + + ER Sbjct: 458 MFR----AGLIHNYADLYELKAEQIQN------LERMGTRSAQNIITGIEKSKEVPFERV 507 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F+LGIR VG +A+ A+ Y + F + LI+V +GD IAQ+++ Sbjct: 508 LFALGIRMVGESVAKKFARIYKTLDAFRTAP----------YEQLIQVDEIGDRIAQSVI 557 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 EF+ + RN +E L + + ++S ++ K LV +G + R + + + Sbjct: 558 EFFADDRNKEILERLQGYGLQFALKETAQTSLSEALKGKTLVVSGVFARHSRDEIKALIE 617 Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 G V + +S KT+ ++ G+N G SKLEKA QLG+ I++EE+F ++Q Sbjct: 618 SHGGKVGSSISSKTNYVVAGENMGPSKLEKATQLGIPILSEEEFEKMIQ 666 >gi|229525582|ref|ZP_04414987.1| DNA ligase [Vibrio cholerae bv. albensis VL426] gi|229339163|gb|EEO04180.1| DNA ligase [Vibrio cholerae bv. albensis VL426] Length = 669 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 387/711 (54%), Gaps = 47/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++L+ L Q + H YY P I D+EYD L R + A P+L + Sbjct: 1 MSNVEQKLTELRQILHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELM---SSDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + V H IP LSL+ ++ +L F R+ ++ F EPK Sbjct: 58 PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDSELDSFYRRMTDRIPAVQHSA--FCCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192 +DG +++ YE G AA RGDG +GE+++ +R I +IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + K F ALN + G K + NPRNAA+G LR+L+ R L F+ + +G Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A Y+ +++ G P+ + + + ++Y ++ R +L Y+IDG+V KVD+ Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++N Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L + VGD V+++RAG+VIP++V +++ R +A+ F Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS V R A RC+GGL C AQ+ E LKHFVSR A ++EGLG + Sbjct: 405 PTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + PAD+F L+ ++ + G S N+ D++NK + +L Sbjct: 459 IEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAKQTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +F+++LGIR VG A +LA+++LS + Q I VP VG I+A Sbjct: 509 PKFLYALGIREVGEATAFNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVIVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 + F+ RN + LL++ P++ V S + K +V TG+ ++ R+ A+ Sbjct: 559 HLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S+ TDI+ G+ GSKL KA +LG+++ +E+ + L+ Sbjct: 619 ALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669 >gi|163741160|ref|ZP_02148552.1| DNA ligase, NAD-dependent [Phaeobacter gallaeciensis 2.10] gi|161385513|gb|EDQ09890.1| DNA ligase, NAD-dependent [Phaeobacter gallaeciensis 2.10] Length = 741 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 300/752 (39%), Positives = 437/752 (58%), Gaps = 57/752 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ ++AR L+ E+ D Y+Q P I D++YDA KR A+A FP+LA Sbjct: 1 MTSDEARARFLLLQDELRVADLAYHQADDPEISDADYDAKKREYRALAEHFPELADGATA 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 L +G + K+TH+ +SL ++ ED+R F + ++ + + +T E Sbjct: 61 ---LETVGAPVASGFGKITHAQRMMSLGNAFDDEDVRDFDKGLRKYLGLGASDPLAYTAE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG +++RYE GK ++AA RGDG GE+V+ R I IP P ++EVRGEV Sbjct: 118 PKIDGLSLSLRYENGKLIHAATRGDGAVGENVTENARTIADIP-QEIAAAPAVLEVRGEV 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+S DF ALND A G K +ANPRNAA+G LR+LN +R L FF + G+ SE Sbjct: 177 YMSHEDFAALNDRHAAQGGKTFANPRNAAAGSLRQLNAEITRSRPLRFFAYSWGELSEPL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A+ Q+E L ++R +GF N + +T +++ Y +++ R+TL YDIDG+VYKVD + Sbjct: 237 AETQFEALARLREMGFQTNPLTKHCSTTDALIAQYRLIEAQRATLGYDIDGVVYKVDALA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL+PV +GG +++N Sbjct: 297 LQARLGFRSTTPRWAIAHKFPAELAWTRLEGIDIQVGRTGALSPVARLQPVTVGGVVVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNEDYI GLD+ G+ +R G+DIR+GD V V RAG+VIPK+ D+ +++R DA PF+F Sbjct: 357 ATLHNEDYIAGLDSKGEEIRDGKDIRIGDWVQVYRAGDVIPKIADVDLSKRPEDAVPFAF 416 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S VR+ A RCTGGL C AQ +E+LKHFVSR AF+I+GLG +Q Sbjct: 417 PAACPECGSDAVREEG------DAVRRCTGGLICPAQAVEKLKHFVSRKAFDIDGLGAKQ 470 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F+ D +I+ PADIFTLQ R + K++N G+G+ S NL+ +I ++R I L Sbjct: 471 IEAFY--GDAVLAIKTPADIFTLQARDAKTLAKLKNRDGWGETSAANLFAAIEEKRRIEL 528 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN------------------------- 585 R IF LGIRHVG AR LA +Y + A ++ Sbjct: 529 ARLIFGLGIRHVGEVGARDLALHYADWDAMAAAVDTARPAALAQRAADEAEDRERVAAAQ 588 Query: 586 ------------------NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 N+ + W L + +G + ++ + + N A +A Sbjct: 589 ENRRARIKEARDRAVATLNVPSEARAAWDDLTGIDGIGATLGVSLSDAFANTEERAAFDA 648 Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 L + +N S + +VFTGTL+K+ R +A+ LGA V+ +S+KTDI Sbjct: 649 LRGHLDIIPPEAPQN-DSPVTGLTVVFTGTLEKMTRAEAKARAEGLGAKVAGSVSKKTDI 707 Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ G GSK +KA+ LGV+I++E+ +L L+ Sbjct: 708 LVAGPGAGSKEQKARDLGVRILDEDGWLELIA 739 >gi|319655032|ref|ZP_08009103.1| DNA ligase [Bacillus sp. 2_A_57_CT2] gi|317393299|gb|EFV74066.1| DNA ligase [Bacillus sp. 2_A_57_CT2] Length = 668 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 242/715 (33%), Positives = 380/715 (53%), Gaps = 53/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + ++ A K + L ++ ++ Y+ +P + D+EYD L R + FP+L Sbjct: 1 MDLQLAEKRVKDLHNLLNQYNYEYHVLDQPSVPDAEYDRLMRDLIELEGQFPELK---TE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GGE+ KV H LSL ++ +DLR F R+ + + ++ + E Sbjct: 58 DSPTQRVGGEILDMFEKVEHQSQMLSLGNAFSEQDLRDFDRRVRQGAGE----NVSYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G F A RGDG GE+++A ++ I +IP L ++ +EVRGE Sbjct: 114 LKIDGLAVSLRYEDGLFTLGATRGDGSIGENITANLKTIRSIPLRLKESV--TMEVRGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 ++ + F LN G +P+ANPRNAA+G LR+L+P R L+ FV+G+ + Sbjct: 172 FMPRRSFEKLNKAKEENGEEPFANPRNAAAGSLRQLDPRLAAKRNLDIFVYGIANVGDTG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N ++ + ++ Y R L YDIDG+V KVD Sbjct: 232 VVSHSEGLDYLDSLGFKTNKERKRCESIEKVIEYVQGWTDKRPNLSYDIDGIVIKVDSLE 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG A+SPRW I++KF ++ T L DI++ +GRTG++TP A LEPV + G + Sbjct: 292 SQEQLGTTAKSPRWAIAYKFPAEEVVTTLRDIELSVGRTGVVTPTALLEPVRVAGTTVQR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DI++GD+V+VK+AG++IP+VV+++ + R + Q F+ Sbjct: 352 ASLHNEDLIR-----------EKDIKIGDQVVVKKAGDIIPEVVNVLADRRTGEEQDFNM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 PTHCPECESELVRLDGE------VALRCINPK-CPAQIREGLIHFVSRNAMNIDGLGEKV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F I+ ADI+ L Q + G+ SV NL +I + SL Sbjct: 454 ISQLFAEN----LIKDVADIYKLTYEQLI------QLERMGEKSVNNLIQAIENSKGNSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E+ +F LGIRHVGA+ A++LA+ + + + +L + +G+ +A Sbjct: 504 EKLLFGLGIRHVGAKAAKTLAQEFGHMEALEKA----------SRDNLTAINEIGEKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +IV F+ + L +N S K +V TG L+ + R++ Sbjct: 554 SIVSFFDQEEAHELIAELKAAGVNMAYNGPKPVSAENSDSFFAGKTVVLTGKLEIMSRNE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+E + LG VS +S+KTD++I G+ GSKL KAQ+LGV++ NEE+ + L + Sbjct: 614 AKEKIEALGGKVSGSVSKKTDVVIAGEEAGSKLTKAQELGVEVWNEERLVEELNK 668 >gi|171463268|ref|YP_001797381.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp. necessarius STIR1] gi|254781389|sp|B1XTU0|DNLJ_POLNS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|171192806|gb|ACB43767.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 671 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 269/715 (37%), Positives = 395/715 (55%), Gaps = 48/715 (6%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + + S + + L+ E++ + YY P++ D EYD L R I P+ S Sbjct: 1 MSSNSPTNLAERYAFLQAELARLEHAYYVLDNPLLPDIEYDRLYRELLDIEAVHPEWVTS 60 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 E ++GG VTH++P LSL + +L F R + + + Sbjct: 61 E---SLSQRVGGAALKEFDSVTHAVPMLSLNNAFEDAELIAFDRRCREVLHAEH---MAY 114 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEV 187 E K DG I++RYE G V AA RGDG SGEDV+A I+ I IP NIP+++EV Sbjct: 115 AGELKFDGLAISLRYENGLLVTAATRGDGASGEDVTANIKTIRAIPLKLTRKNIPQVLEV 174 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-- 244 RGEV++ DF +N + +G K +ANPRNAA+G LR+L+ R L+FF +GLG Sbjct: 175 RGEVFMYLKDFEKMNRQAAELGEKEFANPRNAAAGSLRQLDSKITAKRPLSFFAYGLGAL 234 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + K E+L LG PV + + ++ I+++Y+E+ R +LPYDIDG+VY Sbjct: 235 EPQSWLPKTHEELLNAYIELGLPVCSERKVLHSVQEILAFYSEIDDKRDSLPYDIDGVVY 294 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ F+ Q +LG +R+PR+ ++HK+ ++A T +L ID+Q+GRTG +TPVARL PV +G Sbjct: 295 KVNSFAEQAKLGFASRAPRFALAHKYPAQEALTTVLGIDVQVGRTGAITPVARLAPVEVG 354 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +TNATLHNED IK +D+R+GD V V+RAG+VIP+VV +I + R D Sbjct: 355 GVTVTNATLHNEDEIKR-----------KDVRIGDTVSVRRAGDVIPEVVSVIKDRRPAD 403 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+ F PS CP+C S + R + A RC+GGL C AQ+ + L HF R A +IE Sbjct: 404 AKEFQMPSRCPVCDSHIERLADE------AVARCSGGLFCGAQRKQALIHFAHRRAMDIE 457 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++ +D +R PAD++ L T + N+ G+ S NL +IN+ Sbjct: 458 GLGEKIVDQLVDQN----LVRTPADLYRL------GFTALANLERMGEKSADNLIKAINQ 507 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 RN +L RFIF+LGIRHVG A+ LA +Y S L+ V V Sbjct: 508 SRNTTLARFIFALGIRHVGETTAKDLANHYQSMHALMDA----------GVEDLLTVKDV 557 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G ++A +I F Q N +E LL + EK +S+ + K V TGT + R Sbjct: 558 GPVVADSITSFMQEAHNREVIEQLLASG-MRLAVEEKVISAAVAGKTFVLTGTFPTMTRD 616 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A++ + + GA V+ +S+KTD ++ G + GSKL KA++LGV +++E L LL+ Sbjct: 617 EAKDLLEKAGAKVAGSVSKKTDYVVAGTDAGSKLTKAEELGVPVIDEAAMLDLLK 671 >gi|258542980|ref|YP_003188413.1| DNA ligase [Acetobacter pasteurianus IFO 3283-01] gi|256634058|dbj|BAI00034.1| DNA ligase [Acetobacter pasteurianus IFO 3283-01] gi|256637118|dbj|BAI03087.1| DNA ligase [Acetobacter pasteurianus IFO 3283-03] gi|256640170|dbj|BAI06132.1| DNA ligase [Acetobacter pasteurianus IFO 3283-07] gi|256643227|dbj|BAI09182.1| DNA ligase [Acetobacter pasteurianus IFO 3283-22] gi|256646282|dbj|BAI12230.1| DNA ligase [Acetobacter pasteurianus IFO 3283-26] gi|256649335|dbj|BAI15276.1| DNA ligase [Acetobacter pasteurianus IFO 3283-32] gi|256652321|dbj|BAI18255.1| DNA ligase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655379|dbj|BAI21306.1| DNA ligase [Acetobacter pasteurianus IFO 3283-12] Length = 685 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 284/715 (39%), Positives = 414/715 (57%), Gaps = 34/715 (4%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ +QAR+EL L EI++H+ YY+ P I D+EYDAL+RR DAI P+ +E Sbjct: 1 MTQQQAREELERLAAEIAHHNAAYYRNDAPEISDAEYDALRRRYDAIVAQHPE---AEPE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFT 129 N +G + + K H +P LSL+ +++ ED FI+R RF D + F Sbjct: 58 NSAAQAVGAAPDTAFGKHIHLVPMLSLDNVFDREDFEGFISRATRFLGLDQDATEQLIFV 117 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 EPKIDG I++ YEKG+FV RGDG GEDV+A +R + +P LS + P++IE+RG Sbjct: 118 GEPKIDGLSISLTYEKGRFVRGTTRGDGTEGEDVTANLRTLKDLPLRLSGSYPDLIEIRG 177 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EV++SK FL LN A ++ +ANPRNAA+G LR+L+P R L+ F + LG SE Sbjct: 178 EVFLSKKHFLELNAAQEAANKRLFANPRNAAAGSLRQLDPKITAQRPLSLFAYALGFCSE 237 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 ++ + L++++ GFPVN RQ +++ E+ R+ L YDIDG+VYK+D+ Sbjct: 238 KISRSHWAYLEQLKAWGFPVNPLSRQIKGVEDAEAFFAEVSQSRAELAYDIDGVVYKIDD 297 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ++LG R+PRW I+ KF +QA TRL +I+IQ+GRTG LTPVA LEPVN+GG L+ Sbjct: 298 LALQERLGFAGRAPRWAIAWKFPAEQAITRLKEIEIQVGRTGALTPVAHLEPVNVGGVLV 357 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI-IVNERHPDAQP 427 ATLHNED I +D+R GD V ++RAG+VIP+V+ + + P P Sbjct: 358 MRATLHNEDEIAR-----------KDVRPGDMVFIQRAGDVIPQVLGVAPSPDGTPRQAP 406 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + FP CP+C + VR A RCTGGL C AQ +ERL HFVSR AF+IEGLG Sbjct: 407 YHFPDHCPVCGAAAVRPEGE------AVRRCTGGLTCPAQVVERLIHFVSRQAFDIEGLG 460 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + + F I P DIF L IE G+G+ SV L +I RR Sbjct: 461 DRSIREFHD----IGLILTPGDIFRLHEH----AADIEKRDGWGEQSVQKLLQAIESRRT 512 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 ISL RFI++LGIR +GA AR LA++Y +Y+N+ ++ +D L L + +G Sbjct: 513 ISLSRFIYALGIRRIGASNARLLARHYGTYENWFSQMQAAAIIGSDARLELGSITGIGTT 572 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 A+ +V F N+ + L ++ + + K +VFTGTL + R +A+ Sbjct: 573 TAEDLVAFVAEEHNLQTLADLHANLTIT--EETAASEGALAGKTIVFTGTLHTMTRPEAK 630 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 ++GA VS +S+KTD++++G+ GSK +KA +LG++ M+E ++ + Sbjct: 631 ATAERMGAKVSDSVSKKTDLVVLGEKAGSKAKKAVELGLQTMDEAEWNAFCSEQE 685 >gi|209695779|ref|YP_002263709.1| NAD-dependent DNA ligase LigA [Aliivibrio salmonicida LFI1238] gi|254781250|sp|B6EJQ6|DNLJ_ALISL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|208009732|emb|CAQ80037.1| NAD-dependent DNA ligase [Aliivibrio salmonicida LFI1238] Length = 669 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 249/709 (35%), Positives = 388/709 (54%), Gaps = 47/709 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 K L L+++++YH YY P + D+EYD + ++ I P+ + P Sbjct: 2 SIEKTLDELKKQLNYHAYRYYVEDSPELPDAEYDRMMQQLLLIEKEHPEFMTV---DSPS 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GGE +V H IP LSL+ +N +L F RI D+ F EPK+D Sbjct: 59 QRVGGEALGGFTQVQHEIPMLSLDNAFNDNELDSFEKRINDRL--ISDSVSLFCCEPKLD 116 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYIS 194 G +++ Y G V A RGDG +GE+++ +R I IP L P +EVRGEV++ Sbjct: 117 GLAVSLLYVDGLLVQAGTRGDGATGENITENVRTIRCIPLTLQGEGWPTRLEVRGEVFMP 176 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK- 252 K F ALN+ + KP+ANPRNAA+G LR+L+ TR L+F+ + +G + Sbjct: 177 KAGFDALNERALKRAEKPFANPRNAAAGSLRQLDSKITATRPLSFYAYSVGIIEGGELEG 236 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Y+ +++ G P+ +Q ++ + +YY ++ R L Y+IDG+V KVD SLQ Sbjct: 237 SHYQRFVQLKNWGLPMCEETKQCHSLTDVKAYYKDILERRDALKYEIDGVVIKVDSISLQ 296 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +QLG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEP+ +GG ++NAT Sbjct: 297 EQLGFVARAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNAT 356 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I L + +GD V+++RAG+VIP++V ++ R D++ +P+ Sbjct: 357 LHNADEIARL-----------GVHIGDTVIIRRAGDVIPQIVSVVEARRPEDSKAIIYPT 405 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S++ R RC GL C AQ+ E LKHFVSR A +++GLG + ++ Sbjct: 406 TCPACDSQLERIEGE------VVTRCVAGLVCPAQRKEALKHFVSRKALDVDGLGDKVVE 459 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 E + PAD+F L S + + G S N+ +++NK + +L R Sbjct: 460 QLVDKE----MVETPADLFKL------SAGVLTVLDRMGPKSAQNVVNALNKAKETTLSR 509 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F++SLGIR VG A +LA ++ + + + LI V VGDI+A+ I Sbjct: 510 FLYSLGIREVGEATAANLALHFQTLNAISSAT----------FEQLIEVSDVGDIVAKHI 559 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 + F+ P N +E L ++V + +K +V TGTL K++R++A+ + Sbjct: 560 LGFFSEPHNQAVIENLQLMGVNWPDIKALDESVPQPLADKVVVLTGTLYKLKRNEAKAAL 619 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +LGA V+ +S+ TDI+ G+ GSKL KA++LGV+IMNEEQ + +L Sbjct: 620 QELGAKVAGSVSKNTDILFAGEAAGSKLAKAEELGVEIMNEEQLIEILN 668 >gi|85374270|ref|YP_458332.1| DNA ligase [Erythrobacter litoralis HTCC2594] gi|123409617|sp|Q2N9V6|DNLJ_ERYLH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|84787353|gb|ABC63535.1| DNA ligase [Erythrobacter litoralis HTCC2594] Length = 736 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 282/762 (37%), Positives = 408/762 (53%), Gaps = 80/762 (10%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 +E LS +A EL L ++I+ HD Y+ P I D EYDAL RR + AFP L Sbjct: 3 TELENLSEAEAANELMRLARQIAKHDRLYHAEDAPEITDQEYDALVRRNAELEAAFPHLV 62 Query: 67 RSEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P K+G + S L KVTH + +SL+ + E++ +F+ R+ R+ +D + Sbjct: 63 RE---DSPSRKVGHAVAASPLSKVTHEVRMMSLDNAFADEEVAEFVARVRRYLNIGEDEA 119 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV--------- 176 I FT E KIDG ++RYE GK V AA RGDG GEDV+ + I IP+ Sbjct: 120 IAFTAEDKIDGLSCSLRYENGKLVRAATRGDGQVGEDVTPNVAHIGDIPQELTPLPLAGG 179 Query: 177 ----------------------LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR---- 210 N P + E+RGEVY++ DF ALN ++ R Sbjct: 180 AGGGPLDDSGSAPTPDPSRRREGKWNGPAVFEIRGEVYMATADFHALNARLMDEARAEAD 239 Query: 211 -----------KPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA-KGQYEM 257 + +ANPRNAA+G LR+ + + TR L F+ HG G + Q E+ Sbjct: 240 EKDNAFDTAKVRQFANPRNAAAGSLRQKDASVTATRPLRFWAHGWGAVEGDVPGETQVEV 299 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 ++++ G PV+ R+ T ++++Y + + R+ LPY+IDG+VYKVD Q++LG Sbjct: 300 VEQIAAWGVPVSPLFRRCETLEEMLAHYEAIGAQRADLPYEIDGVVYKVDRLDYQQRLGF 359 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A++PRW I+ KF +QA T L +IDIQ+GRTG LTPV RL PV +GG +TN TLHN D Sbjct: 360 VAKAPRWAIARKFPAEQAETTLENIDIQVGRTGKLTPVGRLAPVLVGGVTVTNVTLHNRD 419 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ L +R GDRV+V+RAG+VIP+VV + + D+ F FP CP C Sbjct: 420 EIERL-----------GVRPGDRVVVQRAGDVIPQVVRNLTPDEKRDS--FEFPDTCPEC 466 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S V + RCTGGL C AQ+ ERLKHFVSR A +I+GLG++ +D FF Sbjct: 467 GSEAVSEEG------GVDVRCTGGLICPAQRTERLKHFVSRAALDIDGLGEKTIDQFF-- 518 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + PADIF L+ R+ +I + G+ D SV NL S+ RR R + L Sbjct: 519 --ALGWLESPADIFRLKDRRD----EILALEGWMDKSVDNLLASVEARREPDTARLLLGL 572 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVGA AR L KY+ + A + + ++L + +G + +A+ +F+ Sbjct: 573 GIRHVGAVTARDLMKYFHELPALRETAEKARAGDEEAVVALTSIDGIGSAVVEALGDFFH 632 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 N + LL EVSP E + S + K +VFTG L+ + R +A+ +LGA Sbjct: 633 EEHNRAVWDDLLSEVSPPRYEVE-TLDSPVAGKTVVFTGKLETMSRDEAKAQAERLGAKA 691 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 S +S KTD+++ G GSKL+KAQ LG+++++E + ++ Sbjct: 692 SGSVSAKTDLLVAGPGAGSKLKKAQDLGIEVIDEAGWAEIVA 733 >gi|158521726|ref|YP_001529596.1| DNA ligase, NAD-dependent [Desulfococcus oleovorans Hxd3] gi|254781314|sp|A9A0L9|DNLJ_DESOH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|158510552|gb|ABW67519.1| DNA ligase, NAD-dependent [Desulfococcus oleovorans Hxd3] Length = 682 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 263/718 (36%), Positives = 394/718 (54%), Gaps = 50/718 (6%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 L +A++ ++ L E+ H+ YY P I D+EYD L R + PDLA Sbjct: 3 NTLDKSEAKERVTFLRNELHRHNHLYYIKDAPEISDAEYDRLFRELAELEALHPDLA--- 59 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 DP P ++G L VT +IP LS+ + E+L KF R+ R Q + + + Sbjct: 60 DPASPTARVGAPPTGDLATVTRTIPMLSISNAFADEELFKFDERVRRSLQ--TGDPVTYL 117 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIE 186 EPK+DGT + + YEKG+ V AA RGDG +GE ++ R I ++P L+ +P ++E Sbjct: 118 AEPKLDGTAVELVYEKGRLVMAATRGDGVTGEVITPNARTIGSVPLHLTGDAVPMPNLLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG- 244 VRGEV ++K F LN + +AN RNAA+G LR+L+ +R L +G+G Sbjct: 178 VRGEVVMTKEGFEKLNALRLERDEPLFANARNAAAGSLRQLDSRVTASRPLTLIAYGIGR 237 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + Q+E++ ++ GF N+ VR G++ +Y ++ IR +LPYDIDG+V Sbjct: 238 FSEIDAISTQHEIVTRLADFGFKTNSHVRWDLDIKGVIDFYRFLEGIRPSLPYDIDGMVV 297 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD Q+ LG +RSPRW+I++KFA Q +TRL+ ID+Q+GRTG LTPVA LEPV IG Sbjct: 298 KVDRLDFQRTLGATSRSPRWVIAYKFAASQETTRLVAIDVQVGRTGALTPVALLEPVTIG 357 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ ATLHNED I +DIRVGD VLV+RAG+VIP+VV +I R + Sbjct: 358 GVTVSRATLHNEDEIAR-----------KDIRVGDAVLVQRAGDVIPEVVQVITGRRTGN 406 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 PF P+ CP+C + VVR+ + A RC AC AQ ER+KHF ++ AF+I+ Sbjct: 407 ETPFQMPATCPVCGTPVVREPSE------AVTRCVNA-ACPAQVKERIKHFAAKGAFDID 459 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG + +D I AD+FTL+ E++ G S NL +I K Sbjct: 460 GLGDKLVDQLVDR----GMIASYADLFTLRVEDL------ESLDRMGFKSAQNLVAAIEK 509 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 R+I+ + F++ LG+RHVGA +A LA+ + A+ L + + Sbjct: 510 SRHITFDAFLYGLGMRHVGAHVATLLARAFPGIDQLAEAALAG---------QLNSIDGI 560 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKI 661 G +IA+++ F+ NP N V++L+ ++ + + K V TGTL+K+ Sbjct: 561 GGVIAESVKNFFSNPENRQTVDSLINHGVALQFPEKEAATGHEMPLAGKTFVLTGTLEKM 620 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +A++ + G V+ +S +TD ++ G+ PGSK +KA+ LGV I++E L LL+ Sbjct: 621 TRDQARQRIEAAGGKVTGSVSSRTDYVVAGEAPGSKRDKAEALGVAILDEAGLLSLLE 678 >gi|54296979|ref|YP_123348.1| DNA ligase [Legionella pneumophila str. Paris] gi|81370862|sp|Q5X6E6|DNLJ_LEGPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|53750764|emb|CAH12171.1| DNA ligase [Legionella pneumophila str. Paris] Length = 673 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 249/713 (34%), Positives = 384/713 (53%), Gaps = 46/713 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + ++ + +L+++I +D YY +P++ D+EYD + +P P Sbjct: 1 MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++ G + + V H P LSL ++ I++L+ FI R + + + F E Sbjct: 58 DSPTQRVSGTPSDAFMPVAHKQPMLSLSNVFTIDELKAFIKRAIEKLDE-PNQQLVFACE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG + + YE G +AA RGDG GE+++A I+ I ++P N P++IEVRGE Sbjct: 117 PKLDGLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGE 176 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG-KTSE 248 VYI K DF A N +G K +ANPRNAA+G LR+LNP +R L + + +G Sbjct: 177 VYIPKADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYSIGACEDY 236 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E L ++ GF V+ R+A G + YY M + R+ LP++IDG+VYK+D Sbjct: 237 KLPNSHLEQLNLLKEFGFRVSPETRRAIGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDS 296 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 SLQ+QLG +R+PR+ +HKF + TRL+ +D Q+GRTG +TPVARLEPV++GG + Sbjct: 297 ISLQQQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTV 356 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I +DIR+GD V+++RAG+VIP+VV +I+ +R +A+ Sbjct: 357 SNATLHNFDEITR-----------KDIRIGDTVIIRRAGDVIPEVVSVILEKRPINARKI 405 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP+C S VVR+ + A RC GGL C AQ + HF SR A IEGLG Sbjct: 406 ELPKNCPVCGSEVVREADE------AIARCIGGLYCKAQLKRMMWHFASRKAMYIEGLGS 459 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 +D + AD++ L + N+ G+ S NL ++ K + Sbjct: 460 VLIDQLVDE----GIVHHLADLYEL------DLQTLANLPRMGEKSAKNLLSALEKSKKT 509 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + RF+++LGIR +G AR LA++Y ++ L+ + +G + Sbjct: 510 TFNRFLYALGIREIGEAGARVLAEHYCDVESLKSAT----------IEELMTLNDIGPVA 559 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A +V F+ N+ ++ LL+ P + + N + K +V TGTL + R +A Sbjct: 560 ASHVVHFFAQAHNLEVIDRLLELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSAMGREEA 619 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + LGA VS +S KTD +I G GSKL KA +LGV I+ E++FL + Sbjct: 620 KAKLLALGAKVSGSVSSKTDYVIAGSEAGSKLIKATELGVAIIEEDEFLKWVN 672 >gi|109898096|ref|YP_661351.1| DNA ligase, NAD-dependent [Pseudoalteromonas atlantica T6c] gi|122972028|sp|Q15UZ1|DNLJ_PSEA6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|109700377|gb|ABG40297.1| DNA ligase, NAD-dependent [Pseudoalteromonas atlantica T6c] Length = 677 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 252/709 (35%), Positives = 395/709 (55%), Gaps = 48/709 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + L+ + I+ ++ YY P + D+EYD L R I + PDL P+ P K Sbjct: 8 AQRLTQIINTINEYNYQYYVQDNPSVPDAEYDRLMRELLDIENNHPDL---RSPDSPSQK 64 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + +V H +P LSL+ ++ +D++ F RI K + I F+ EPK+DG Sbjct: 65 VGGAALSAFEQVEHEVPMLSLDNAFDEDDMQAFEKRIKDRL--KISSEISFSCEPKLDGL 122 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196 ++I YE G+ V AA RGDG GE+++ +R I +P L N P +EVRGEV +++ Sbjct: 123 AVSILYENGQLVRAATRGDGRVGENITTNVRTIANVPLRLRGENFPSRLEVRGEVIMTRA 182 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK--- 252 F+ LN+ I G+KP+ NPRNAA+G LR+L+P R L F+ + LG Sbjct: 183 GFVTLNEAQIKKGKKPFVNPRNAAAGSLRQLDPKITAARPLLFYSYSLGLVENEQQPLGE 242 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 L ++ G P++ + ++Y++++ +RS L YDIDG+V+KVD ++Q Sbjct: 243 THSSRLAQLSEWGLPLSKELEVTQGATQCLTYFHKIGELRSQLSYDIDGVVFKVDNIAMQ 302 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG AR+PRW I+HKF ++ + LLD++ Q+GRTG +TPVARLEP +GG ++NAT Sbjct: 303 QELGFVARAPRWAIAHKFPAQEEMSTLLDVEFQVGRTGAITPVARLEPTFVGGVTVSNAT 362 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN+D I L I++GD V+++RAG+VIP++V I+ ++R DA+ FP Sbjct: 363 LHNQDEINRL-----------GIKIGDSVIIRRAGDVIPQIVAIVADKRPDDAKDIVFPE 411 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S + + A RCTGGL C AQ+ E +KHF SR A +++GLG + ++ Sbjct: 412 SCPVCDSAIEKLEGE------AVARCTGGLYCKAQRKEAMKHFASRKALDVDGLGDKLIE 465 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 +E ++ PAD F L + ++ G+ S NL +++ K + +L + Sbjct: 466 QLVDAE----MVKSPADFFAL------DIAPLSSMERMGEKSAVNLVNALEKSKKTTLAK 515 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F++SLGIR VG A++LA+++L+ + Q D +L V VG I+AQ + Sbjct: 516 FLYSLGIREVGEATAQNLAQHFLTLEAIEQA----------DLDALQAVSDVGVIVAQHV 565 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVT 671 F++ N+ + ALL+ + + + + V TGTL + R+ A+ + Sbjct: 566 FNFFKEEHNLEVISALLEAGVHWPKIEKLALDELPLAGQVYVLTGTLNVMDRNSAKAKLQ 625 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA VS +S KTD ++ G+ GSKL KAQ LGVK+MNE+ L + Sbjct: 626 SLGAKVSGSVSAKTDCLVAGEKAGSKLTKAQDLGVKVMNEDDMLAMFAD 674 >gi|255971181|ref|ZP_05421767.1| NAD-dependent DNA ligase [Enterococcus faecalis T1] gi|255962199|gb|EET94675.1| NAD-dependent DNA ligase [Enterococcus faecalis T1] Length = 676 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 240/714 (33%), Positives = 383/714 (53%), Gaps = 53/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L++ A L ++++ + YY +P + D YD L + I FPDL P Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ K H IP SL ++ ED+ F R+ + K + + E Sbjct: 63 DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++RYE G FV A RGDG GE+++ +R + ++P L+ I +EVRGE Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ R LN F++ + + Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+EF+ Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G ++ Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CPIC S +V A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L + ++ AD++ L Q + + + S N+Y +I + S+ Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ IA Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRAT----------AEEIVALDSIGETIAD 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++V +++N + L K V S ++K +V TG L + R + Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTRAE 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + L Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672 >gi|300114089|ref|YP_003760664.1| DNA ligase, NAD-dependent [Nitrosococcus watsonii C-113] gi|299540026|gb|ADJ28343.1| DNA ligase, NAD-dependent [Nitrosococcus watsonii C-113] Length = 675 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 241/708 (34%), Positives = 381/708 (53%), Gaps = 47/708 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A+ + +L++ I+ +D YY P+I DSEYD L R + +P+L + P Sbjct: 7 AKDRIQALKELINNYDYAYYVMDNPLIPDSEYDRLIRELRVLEENYPELITL---DSPTQ 63 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G + L +V H +P LSL ++ +L F R+ + + + EPK+DG Sbjct: 64 RVGAKPIKFLGEVKHEVPMLSLNNAFHEGELVDFHRRVKARLGIE---RVDYAAEPKLDG 120 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTI-PRVLSLNIPEIIEVRGEVYISK 195 +++ Y+ G V A RGDG +GEDV+ IR IPT+ + P ++EVRGEVY+ + Sbjct: 121 LAVSLLYQDGVLVQGATRGDGVTGEDVTHNIRTIPTVSLCLRDEKAPSLLEVRGEVYMPR 180 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF-AKG 253 F LN E I G KP+ NPRNAA+G LR+L+ F +G+G+ + Sbjct: 181 KGFERLNREQIVKGEKPFVNPRNAAAGSLRQLDSRIAASRPLAIFCYGIGQVEQGILPDR 240 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E+L +++ G + ++ G YY M +R LPY+IDG+V+KVD + Q+ Sbjct: 241 HSEVLCQLKQWGLRILPHLQVVEGLAGCKKYYQHMLDMRDKLPYEIDGVVFKVDYLNQQQ 300 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG AR+PRW +++KF ++ T++LDI++Q+GRTG LTPVA L+P+ +GG ++ ATL Sbjct: 301 TLGSLARAPRWALAYKFPAQEELTQILDIEVQVGRTGALTPVAWLQPIFVGGVTVSKATL 360 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNE I+ +DIR+GD V V+RAG+VIP++V +++ ER P ++ F P Sbjct: 361 HNEGEIRR-----------KDIRIGDTVYVRRAGDVIPEIVKVVLEERLPGSRLFQMPRQ 409 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S +V++ A RC+GGL C AQ+ E +KHF +R A +I GLG + ++ Sbjct: 410 CPVCDSEIVKEEG------RAIARCSGGLYCPAQRKEAVKHFAARRAMDINGLGDKLVEQ 463 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 K I+ AD++ L + Q + G S NL ++I + ++ +L RF Sbjct: 464 LVKR----GLIKDVADLYDLTKEQLVG------LERMGQKSAANLINAIQQSKHTTLPRF 513 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +++LGIR VG A+ L K + S A L +V +G ++A I Sbjct: 514 LYALGIREVGEATAQVLTKEFGSLAALASASE----------ERLQQVVDIGPVVAAHIA 563 Query: 614 EFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F++ N +++L + H+ + + + V TGTL+ + R +A+E + Sbjct: 564 AFFRQLHNCQVIQSLQEAGVCWPELEHKAPIVRPLSGRTFVLTGTLESMTREQAKERLQA 623 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LG VS +S TD +I+G PGSKL KA+ L + I++E FL LL Sbjct: 624 LGGKVSGSVSPHTDYLIIGAKPGSKLIKARNLEITILDETNFLNLLDD 671 >gi|206890248|ref|YP_002249789.1| DNA ligase, NAD-dependent [Thermodesulfovibrio yellowstonii DSM 11347] gi|254781443|sp|B5YIF8|DNLJ_THEYD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|206742186|gb|ACI21243.1| DNA ligase, NAD-dependent [Thermodesulfovibrio yellowstonii DSM 11347] Length = 670 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 239/711 (33%), Positives = 386/711 (54%), Gaps = 50/711 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 E +KE+ L +E++YH+ YY P+I D EYD + RR + + + P+ Sbjct: 5 PEDIKKEIEKLVKELNYHNYRYYVLDSPVISDEEYDMMLRRLKELEEKWGYIL----PDS 60 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + K H P LSL+ ++IE+LR F R+ R + + +T+EPK Sbjct: 61 PTQRVGAAPSEKFEKAEHREPMLSLDNAFSIEELRDFDARVKRLLGSSE--EVEYTVEPK 118 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRGEV 191 DG + + Y+ G A+ RGDG+ GED++ I+ I IP + IPE I++RGEV Sbjct: 119 YDGLAVELSYKDGLLYKASTRGDGYVGEDITQNIKTIKAIPLRIEGVDKIPEEIDIRGEV 178 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y++ ++F +N E I G +ANPRNAASG +R+L+P+ +R L +G+G I Sbjct: 179 YLNIDEFERINKERIEKGEPVFANPRNAASGSVRQLDPSITASRRLYMSCYGIGYVKGIE 238 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K Q E ++ ++ FPV V+ A ++ E++ +R P++ DG V KV+ F Sbjct: 239 FKSQIEFIEWLKKGRFPVPAYVKLAKGIEEVIEAIKEIEKLRQGYPFETDGAVVKVNSFE 298 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG + R PRW I++K+ Q T+L DI +GRTG++TPVA LEPV IGG ++ Sbjct: 299 LQRKLGTKTREPRWAIAYKYPAHQGITKLKDILASVGRTGVITPVAVLEPVKIGGVTVSR 358 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 +TLHN D ++ +DIRVGD V+V+RAGEVIP ++ ++ + R + + Sbjct: 359 STLHNWDEVER-----------KDIRVGDYVIVERAGEVIPHIIGVVKDRRTGEEKEVKI 407 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S+ VR+ K C AQ ER+KHF SR A NIEGLG + Sbjct: 408 PEHCPVCGSKTVREPGEVAVK-------CINFNCPAQVEERIKHFASRRAMNIEGLGDKT 460 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ I+ D++ L++ + GF ++S L ++I K + +L Sbjct: 461 VELLHNK----GIIKHFVDLYKLRQEDIKG------LPGFAELSSKKLIEAIAKSKKTTL 510 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R +++LGI VG ++ LA+++ ++ + L+++P +G+ A+ Sbjct: 511 SRLLYALGISQVGEYASKLLAQHFRKLEDLY----------HIKAEKLVQIPQIGEKTAK 560 Query: 611 AIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 I +F+ N N+ A+E L + + E+ S ++ V TGTL K R + +E Sbjct: 561 TIEQFFNNEENLKAIEELKRMGLKVENPEFEEEKKPSPLKGLTFVITGTLPK-PREEVKE 619 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + G VS+ +S+ TD ++VG++PGSKL KAQ L VK ++ E+FL +L+ Sbjct: 620 MIEKAGGKVSSSVSKNTDYLLVGEDPGSKLAKAQALRVKTLSYEEFLKMLE 670 >gi|91793866|ref|YP_563517.1| DNA ligase, NAD-dependent [Shewanella denitrificans OS217] gi|123165936|sp|Q12L82|DNLJ_SHEDO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91715868|gb|ABE55794.1| DNA ligase, NAD-dependent [Shewanella denitrificans OS217] Length = 670 Score = 552 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 383/711 (53%), Gaps = 51/711 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + ++++L E++ H+ YY P + D+ YD L ++ A+ P+L +S + Sbjct: 1 MSAIQLQIANLVNELNQHNIKYYVDDAPSVTDAYYDKLMQQLLALEAEHPELIQS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG +VTH P LSL+ + D F RI ++ + EPK Sbjct: 58 PSRRVGGHALDKFSQVTHLKPMLSLDNAFEQADFEAFNKRITDKVG-----TVDYVCEPK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG ++I Y G+F AA RGDG GED++ +R I +IP L + PE++EVRGEV+ Sbjct: 113 LDGLAVSITYRNGQFERAATRGDGTVGEDITENVRTIKSIPMGLRGDGYPELVEVRGEVF 172 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS---E 248 + K F ALN A G K + NPRNAA+G LR+L+ +R L F+ + LG + Sbjct: 173 MPKAAFDALNARQQAKGDKTFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEGEVQ 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + L +++ G PV+ V+ ++ + +YY+++ + R L Y+IDG+V KV+ Sbjct: 233 PMEPSHFGQLAQLKRWGLPVSQEVKLCDSLEKVYAYYDDILNRRGQLSYEIDGVVIKVNA 292 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q LG A++PRW I++KF ++ T L +D Q+GRTG +TPVARL+ V +GG + Sbjct: 293 IPKQLSLGFVAKAPRWAIAYKFPAQEEMTLLESVDFQVGRTGAVTPVARLQAVFVGGVTV 352 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I L +++GD V+++RAG+VIP++V I+ +R DAQ Sbjct: 353 SNATLHNADEIARL-----------GVKIGDTVIIRRAGDVIPQIVAIVPEKRPQDAQNI 401 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CP+CQS V R A RC+GGL C AQ+ E +KHF SR A NI+G+G Sbjct: 402 VFPTHCPVCQSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALNIDGMGD 455 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E ++ PAD+F L + + + S T L +I+ + Sbjct: 456 KIVEQLIDKE----LVQSPADLFGLTA------SMMTMLERMAMKSATKLVAAIDAAKTT 505 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI+SLGIR VG A +LA ++ S + L+ V VG+I+ Sbjct: 506 TLARFIYSLGIREVGEATAANLANHFKSLAAVREA----------GVEQLLEVADVGEIV 555 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQ 667 A+ I F+ N+ V+ LL ++ + V TGTL ++ R++A+ Sbjct: 556 AKHIRHFFDQAHNLEVVDKLLAAGINWPEITAVAEDELRLKGQTWVLTGTLTQLNRNEAK 615 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK+++E + L L Sbjct: 616 AQLQALGAKVAGSISKNTDCLVAGEAAGSKLAKAQELGVKVIDETELLVFL 666 >gi|300861866|ref|ZP_07107946.1| DNA ligase (NAD(+)) [Enterococcus faecalis TUSoD Ef11] gi|300848391|gb|EFK76148.1| DNA ligase (NAD(+)) [Enterococcus faecalis TUSoD Ef11] Length = 676 Score = 552 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 241/714 (33%), Positives = 383/714 (53%), Gaps = 53/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L++ A L ++++ + YY +P + D YD L + I FPDL P Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ K H IP SL ++ ED+ F R+ + K + + E Sbjct: 63 DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++RYE G FV A RGDG GE+++ +R + ++P L+ I +EVRGE Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ R LN F++ + + Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 AK Q+E L+++ +GF N + + + SY E RSTLPY+IDG+V KV+EF+ Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWSYIEEYHEKRSTLPYEIDGIVIKVNEFA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G ++ Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CPIC S +V A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L + ++ AD++ L Q + + + S N+Y +I + S+ Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ IA Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRAT----------AEEIVALDSIGETIAD 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++V +++N + L K V S ++K +V TG L + R + Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + L Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672 >gi|315145225|gb|EFT89241.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2141] Length = 676 Score = 552 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 241/714 (33%), Positives = 382/714 (53%), Gaps = 53/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L++ A L ++++ + YY +P + D YD L + I FPDL P Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ K H IP SL ++ ED+ F R+ + K + + E Sbjct: 63 DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++RYE G FV A RGDG GE+++ +R + ++P L+ I +EVRGE Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ R LN F++ + + Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 AK Q+E L+++ +GF N + + + SY E RSTLPY+IDG+V KV+EF+ Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWSYIEEYHEKRSTLPYEIDGIVIKVNEFA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G + Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTGSR 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CPIC S +V A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L + ++ AD++ L Q + + + S N+Y +I + S+ Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ IA Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRAT----------AEEIVALDSIGETIAD 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++V +++N + L K V S ++K +V TG L + R + Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + L Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672 >gi|88810628|ref|ZP_01125885.1| DNA ligase, NAD-dependent [Nitrococcus mobilis Nb-231] gi|88792258|gb|EAR23368.1| DNA ligase, NAD-dependent [Nitrococcus mobilis Nb-231] Length = 672 Score = 552 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 251/706 (35%), Positives = 398/706 (56%), Gaps = 45/706 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + +++L +I H+ Y+ P + D++YD L R A+ PDL P+ P Sbjct: 7 AAVERRVAALRDQIEQHNYRYFVLDDPQVSDADYDVLMRELQALEADHPDLV---SPDSP 63 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G + + + H +P LSL+ ++ +L +F RI N I + EPK+ Sbjct: 64 TQRVGAKPVEAFGEARHGVPMLSLDNAFDAGELGEFDRRIRERLGI---NRIAYMAEPKL 120 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193 DG + +RYE+G+ V RGDG GED++A IR + TIP L PE+IEVRGE+ I Sbjct: 121 DGLSVNLRYEQGRLVQGGTRGDGQVGEDITANIRTLRTIPLRLRGKGWPELIEVRGEIVI 180 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 K DF LN + G + +ANPRNAA+G LR+L+P R L FF G+G++ E+ A Sbjct: 181 RKADFKHLNTLRLEAGERLFANPRNAAAGSLRQLDPRVTARRPLTFFAFGIGESREVIAG 240 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q ++L+++ GFPV V+ + ++YY + + R TLP++IDG VYKVD+ S Q Sbjct: 241 RQSQILERLHGWGFPVYERVQVVSGVEECLAYYRRLMAQRETLPFEIDGTVYKVDDLSSQ 300 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG AR+PRW +++K ++ + +LDI+ +GRTG++TPVARLEPV +GG ++ +AT Sbjct: 301 QRLGFTARAPRWAVAYKLPAREGLSVVLDIEPSVGRTGVITPVARLEPVPLGGVIVRHAT 360 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED ++ +D+R+GD V+++RAG+VIP+++ + +R AQP+ P Sbjct: 361 LHNEDEVRR-----------KDVRIGDTVMLRRAGDVIPEIIGVQPEKRPQGAQPWRMPL 409 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C + V+R + AAHRC GGL C+AQ+ + HF SR A +I+GLG++ ++ Sbjct: 410 KCPVCSAEVMR------LEHQAAHRCLGGLYCAAQRTGAILHFASRRAMDIDGLGEKLVE 463 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + AD+++L+R Q + G+ S NL +I+ R +L R Sbjct: 464 QLVGR----GLVATVADLYSLERAQLV------ELERMGERSAGNLLRAIDASRATTLAR 513 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+++LGI VG A+ LA++Y + +L R+P +G ++AQ I Sbjct: 514 FLYALGIPEVGEVTAKRLAEHYGDLDPLERATE----------EALTRLPDIGPVLAQRI 563 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F+ P N ++AL + N S+ + + V TGTL+ R +AQE + Sbjct: 564 THFFAQPHNREVIDALRRSGLHWSVPDGANQSTPLAGRVFVLTGTLKGYTREEAQERIEA 623 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 LG V+ +S+ TD +IVG+ PGSK +KA QLG+ +++E F L+ Sbjct: 624 LGGRVTGHVSKNTDYMIVGEAPGSKRDKAVQLGITLLDESGFRQLI 669 >gi|255973805|ref|ZP_05424391.1| NAD-dependent DNA ligase [Enterococcus faecalis T2] gi|256964440|ref|ZP_05568611.1| NAD-dependent DNA ligase [Enterococcus faecalis HIP11704] gi|257080988|ref|ZP_05575349.1| NAD-dependent DNA ligase [Enterococcus faecalis E1Sol] gi|307272536|ref|ZP_07553789.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0855] gi|307284516|ref|ZP_07564678.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0860] gi|255966677|gb|EET97299.1| NAD-dependent DNA ligase [Enterococcus faecalis T2] gi|256954936|gb|EEU71568.1| NAD-dependent DNA ligase [Enterococcus faecalis HIP11704] gi|256989018|gb|EEU76320.1| NAD-dependent DNA ligase [Enterococcus faecalis E1Sol] gi|306503193|gb|EFM72447.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0860] gi|306510821|gb|EFM79838.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0855] gi|315151576|gb|EFT95592.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0012] gi|315170712|gb|EFU14729.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1342] gi|327534312|gb|AEA93146.1| NAD-dependent DNA ligase LigA [Enterococcus faecalis OG1RF] Length = 676 Score = 552 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 240/714 (33%), Positives = 383/714 (53%), Gaps = 53/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L++ A L ++++ + YY +P + D YD L + I FPDL P Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ K H IP SL ++ ED+ F R+ + K + + E Sbjct: 63 DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++RYE G FV A RGDG GE+++ +R + ++P L+ I +EVRGE Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ R LN F++ + + Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+EF+ Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G ++ Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CPIC S +V A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L + ++ AD++ L Q + + + S N+Y +I + S+ Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ IA Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRAT----------AEEIVALDSIGETIAD 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++V +++N + L K V S ++K +V TG L + R + Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + L Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672 >gi|315161924|gb|EFU05941.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0645] Length = 676 Score = 552 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 241/714 (33%), Positives = 383/714 (53%), Gaps = 53/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L++ A L ++++ + YY +P + D YD L + I FPDL P Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ K H IP SL ++ ED+ F R+ + K + + E Sbjct: 63 DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++RYE G FV A RGDG GE+++ +R + ++P L+ I +EVRGE Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ R LN F++ + + Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 AK Q+E L+++ +GF N + + + SY E RSTLPY+IDG+V KV+EF+ Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWSYIEEYHEKRSTLPYEIDGIVIKVNEFA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G ++ Sbjct: 297 LQDELGFTLKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CPIC S +V A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L + ++ AD++ L Q + + + S N+Y +I + S+ Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ IA Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRAT----------AEEIVALDSIGETIAD 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++V +++N + L K V S ++K +V TG L + R + Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + L Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672 >gi|159897339|ref|YP_001543586.1| DNA ligase, NAD-dependent [Herpetosiphon aurantiacus ATCC 23779] gi|254781348|sp|A9AXP4|DNLJ_HERA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|159890378|gb|ABX03458.1| DNA ligase, NAD-dependent [Herpetosiphon aurantiacus ATCC 23779] Length = 673 Score = 552 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 245/710 (34%), Positives = 365/710 (51%), Gaps = 50/710 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 EQ +SL E++ ++ YY P++ D++YD+L AI +P+L P+ P Sbjct: 5 EQTVARAASLRDELNLYNHHYYTLDAPLVSDAQYDSLLNELRAIEAEYPEL---RTPDSP 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G KV H +P LSL +N +DL + R + + +T+EPKI Sbjct: 62 TQRVGSAPLSKFPKVQHPVPMLSLGNAFNADDLAAWRRRAEQIIG---TQPMSYTVEPKI 118 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRGE 190 DG + + Y G F A RG+G GED++A +R I +P L PE IEVRGE Sbjct: 119 DGLAVALTYINGVFSVGATRGNGEIGEDITANLRTIRDVPLRLQPIDGQALPERIEVRGE 178 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VY+ F LN+ G K +ANPRNAA+G LR+L+ T +R L FF + +G S + Sbjct: 179 VYLPIESFNQLNERQAHAGEKVFANPRNAAAGSLRQLDSTITASRPLRFFAYAVGPFSGV 238 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 K Q + L +R GF VN R F ++ Y +E S R +L Y++DG+V K+++F Sbjct: 239 ELKSQAQTLDTLRTYGFSVNPDTRLFADFEAVIEYCHEWMSRRESLSYEVDGVVVKINDF 298 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 ++Q++LG R PRW I++KF ++ +T LL+I I +GRTG L P A LEPV++GG + Sbjct: 299 AMQRELGVVGRDPRWAIAYKFPAREETTTLLNIVINVGRTGKLIPNAVLEPVSLGGTTVQ 358 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 +A+LHN DYI RDIR+GDRV+VKRAG+VIP V+ IV R D + + Sbjct: 359 HASLHNADYI-----------ISRDIRIGDRVVVKRAGDVIPYVIGPIVEARTGDERVWP 407 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C V + + C A+ + ++H+VSR A +I G+G++ Sbjct: 408 APTHCPTCGQPVEQIGDE-------VDIYCVNNTCPARLIRSIEHWVSRGAMDIVGMGER 460 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 Q F + I+ DI+ L + G+G+ V NL ++I + + Sbjct: 461 QASQFVE----MGLIKSIPDIYRL------TVDSFGGREGYGERRVANLLNAIEESKRRP 510 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L+R I +LGI VG A LA+Y+ S AQ L + +G A Sbjct: 511 LDRVITALGINGVGTVAAADLARYFRSLPALAQAT----------IEQLTAIEGIGGSTA 560 Query: 610 QAIVEFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 Q++V+F+ P N + LL + S + K V TGTL I R AQ Sbjct: 561 QSVVDFFNTPANQQLIAELLALGLKAEPSEVAELQSDRLAGKSFVITGTLPGISREAAQA 620 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + G V +S+KTD ++ G+ GSKL KAQ LGVK+++ ++ LL Sbjct: 621 LIEAHGGKVGGSVSKKTDYLLAGEAAGSKLTKAQSLGVKVLSMDELHALL 670 >gi|229512467|ref|ZP_04401940.1| DNA ligase [Vibrio cholerae TMA 21] gi|229350548|gb|EEO15495.1| DNA ligase [Vibrio cholerae TMA 21] Length = 669 Score = 552 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 242/711 (34%), Positives = 386/711 (54%), Gaps = 47/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++L+ L Q + H YY P I D+EYD L R + A P+L + Sbjct: 1 MSNVEQKLTELRQILHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELM---SSDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + V H IP LSL+ ++ +L F R+ ++ F EPK Sbjct: 58 PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192 +DG +++ YE G AA RGDG +GE+++ +R I +IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + K F LN + G K + NPRNAA+G LR+L+ R L F+ + +G Sbjct: 176 MPKAGFEVLNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A Y+ +++ G P+ + + + ++Y ++ R +L Y+IDG+V KVD+ Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++N Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L + VGD V+++RAG+VIP++V +++ R +A+ F Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS V R A RC+GGL C AQ+ E LKHFVSR A ++EGLG + Sbjct: 405 PTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + PAD+F L+ ++ + G S N+ D++NK + +L Sbjct: 459 IEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAKQTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +F+++LGIR VG A +LA+++LS + Q I VP VG I+A Sbjct: 509 PKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVIVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 + F+ RN + LL++ P++ V S + K +V TG+ ++ R+ A+ Sbjct: 559 HLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S+ TD++ G+ GSKL KA +LG+++ +E+ + L+ Sbjct: 619 ALQALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669 >gi|327438552|dbj|BAK14917.1| NAD-dependent DNA ligase [Solibacillus silvestris StLB046] Length = 665 Score = 552 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 240/713 (33%), Positives = 379/713 (53%), Gaps = 56/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + + ++ L + + + YY KP++ DS YD L A+ A P+ P+ Sbjct: 1 MNEIEQRIAELNKLLHEYGYAYYVLDKPVVEDSVYDQLLHELIALEEANPEFIY---PDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + KVTH LSL +N EDLR F +I + K + E K Sbjct: 58 PTQRVGGMVLEGFKKVTHETAMLSLSNAFNEEDLRDFDRKIEQAIGKNY----SYVCELK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I++RYE G FV A RGDG GED++A ++ I IP L+ + +EVRGE Y+ Sbjct: 114 IDGLAISLRYENGVFVQGATRGDGTVGEDITANLKTIRAIPLRLNEPV--TLEVRGEAYM 171 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFA 251 K F LN+ G + +ANPRNAA+G LR+L+P F G Sbjct: 172 PKKSFEKLNERRAENGEELFANPRNAAAGSLRQLDPKIAASRNLSTFIYAVGGDGESYGI 231 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 G +EML+ + LGFP N T ++++ + R L Y+IDG+V KV+ ++ Sbjct: 232 DGHWEMLKYLEELGFPSNKEREYCETIEDVLAFIEKWTEARPNLSYEIDGIVIKVNRYAH 291 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG A+SPRW I++KF ++ T+LLDI++ +GRTG++TP A L PV + G ++ A Sbjct: 292 QDELGFTAKSPRWAIAYKFPAEEVITKLLDIELTVGRTGVITPTAILTPVLVAGTTVSRA 351 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHNED I+ +DIR+ D V+V++AG++IP++V +++ +R DA P+ P Sbjct: 352 SLHNEDLIR-----------EKDIRIDDTVIVRKAGDIIPQIVGVVLEQRPDDAVPYKMP 400 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C V A RC C AQ E +KHFVSR+A NI+GLG++ + Sbjct: 401 THCPACDEEV------VRIDTDVALRCVNPQ-CPAQIAEGVKHFVSRNAMNIDGLGEKVV 453 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + + I+ A ++ L Q + + G S TNL +++ + ++ SLE Sbjct: 454 EQLLRE----GYIQDVAGLYELTVEQLIN------LERMGQKSATNLVEALIQSKDNSLE 503 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R +F LGIRHVG + A+ LA ++ + L + +GD +A++ Sbjct: 504 RLLFGLGIRHVGEKAAKILAAHFETIDALMVATE----------EDLKDIHEIGDKMAES 553 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 IV ++ N + +E L + + ++ K +V TG LQ++ R++A+ Sbjct: 554 IVAYFANEQVQQLIERLKGFGLNMSYKGKKIVVEAGANPFAGKTIVLTGKLQQLTRNEAK 613 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + QLG V+ +S+KTD++IVG++ GSKLEKAQ LG++I +E + L++Q Sbjct: 614 AKIEQLGGTVAGSVSKKTDLVIVGEDAGSKLEKAQSLGIEIWDE---VRLIEQ 663 >gi|257086082|ref|ZP_05580443.1| NAD-dependent DNA ligase [Enterococcus faecalis D6] gi|256994112|gb|EEU81414.1| NAD-dependent DNA ligase [Enterococcus faecalis D6] gi|315025779|gb|EFT37711.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2137] Length = 676 Score = 552 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 239/714 (33%), Positives = 383/714 (53%), Gaps = 53/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L++ A L ++++ + YY +P + D YD L + I FPDL P Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ K H IP SL ++ ED+ F R+ + K + + E Sbjct: 63 DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++RYE G FV A RGDG GE+++ +R + ++P L+ I +EVRGE Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ R LN F++ + + Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+EF+ Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G ++ Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D+I+ +DIR+ D +++ +AG++IP+V ++V +R D+QP+ Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHIIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CPIC S +V A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L + ++ AD++ L Q + + + S N+Y +I + S+ Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ IA Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRAT----------AEEIVALDSIGETIAD 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++V +++N + L K V S ++K +V TG L + R + Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + L Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672 >gi|239501241|ref|ZP_04660551.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB900] Length = 678 Score = 552 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 253/720 (35%), Positives = 380/720 (52%), Gaps = 47/720 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I +++ L Q I+ H+ YY +P I DSEYD L + A+ +P+L ++ Sbjct: 1 MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+GG+ VTH +P LSL ++N EDL F R+ + + + +E Sbjct: 58 DSPTTKVGGQALSKFESVTHVVPMLSLGNVFNKEDLFAFARRVEERL---PNQKVQYEVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188 K+DG I++ YE G V RGDG +GED++ ++ I +P+VL EI +EVR Sbjct: 115 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 174 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247 GEV + K+ F LN + A G K +ANPRNAA+G LR+L+P F+ +G+ + Sbjct: 175 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 234 Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ LQ + LGF + N+ + Y +++ R L +IDG+V KV Sbjct: 235 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 294 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q+QLG +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 354 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++N TLHN I L D+R+GD V V R G+VIPKV + R +A+ Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 403 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C S VV A RC+GGL C+AQ++E ++HFVSR A +IEGL Sbjct: 404 VVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ + ++ ADI+ L ++ + I G+ SV NL D+I + Sbjct: 458 GDRWVESLLR----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASK 509 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI++LGIR VG AR LA + + + + +L + P VGD Sbjct: 510 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA----------NVEALKKTPDVGD 559 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I A+ I +F+ P NI ++ L+ + + V TGTL+++ R +A Sbjct: 560 ITAEWIADFFLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 + + LGA VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y TL Sbjct: 619 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTLS 678 >gi|89075460|ref|ZP_01161871.1| DNA ligase [Photobacterium sp. SKA34] gi|89048732|gb|EAR54303.1| DNA ligase [Photobacterium sp. SKA34] Length = 670 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 250/696 (35%), Positives = 395/696 (56%), Gaps = 47/696 (6%) Query: 29 SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88 YH YY P I D+EYD + ++ I P+ + P ++GG + Sbjct: 17 DYHGHRYYVEDNPEIPDAEYDRMMQQLLKIEAEHPEWVTV---DSPSQRVGGAALEGFTQ 73 Query: 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148 V H I LSL+ +N +DLR F R+ + + + EPK+DG +++ YEKG Sbjct: 74 VKHEIAMLSLDNAFNDDDLRAFQKRLQDRLRS--GATFSYCCEPKLDGLAVSLMYEKGVL 131 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG +GE+++ +R I IP L + PE +EVRGEV++ K F LN + + Sbjct: 132 VQAATRGDGATGENITHNVRTIRAIPLKLQGDDWPERLEVRGEVFMPKKGFEELNAKALK 191 Query: 208 VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIFAKGQYEMLQKMRCLG 265 G K +ANPRNAA+G LR+L+P TR L+F+ + +G A QYE L +++ G Sbjct: 192 KGDKAFANPRNAAAGSLRQLDPKITATRPLSFYAYAVGVVDGRELANTQYERLCQLKAWG 251 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 P+ +R+ ++ +++Y+ + R +L Y+IDG+V KVD+ Q+QLG AR+PRW Sbjct: 252 LPMCPEIRKVDSIEEVIAYHQNIGEKRQSLGYEIDGVVIKVDDVDTQQQLGFVARAPRWA 311 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 I++KF ++ T L +++ Q+GRTG +TPVA+LEPV +GG ++NATLHN D + L Sbjct: 312 IAYKFPAQEEMTTLNNVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEVARL--- 368 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 + +GD V+++RAG+VIP++ ++ + R +AQ FP+ CP+CQS+V R Sbjct: 369 --------GVMIGDTVIIRRAGDVIPQIASVVESRRPANAQAIVFPTECPVCQSKVERIE 420 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 A RCTGGL C AQ+ E LKHFVSR A +++G G++ ++ E + Sbjct: 421 GE------AVARCTGGLFCQAQRKEALKHFVSRKALDVDGCGEKVIEQLVDRE----MVT 470 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 PAD+F + S ++ + G S L D++N + +L RFI+SLGIR VG Sbjct: 471 TPADLF------KFSAGEVTVLERMGPKSAQKLVDALNASKLTTLPRFIYSLGIREVGEA 524 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 A +LA Y+ + ++ +Q LI VP VG I+A I F++ N+ V Sbjct: 525 TAANLANYFETLESISQATK----------DQLIEVPDVGGIVAAHIFNFFREEHNMVVV 574 Query: 626 EALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 L + P I + +++V ++ K +V TG+L ++ R A+ + +LGA V+ +S+ Sbjct: 575 NELQEVGIHWPEIEKIDEDVELPLDGKVVVLTGSLSQLTRSDAKAALQKLGAKVTGSVSK 634 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 KTD+++ G+ GSKL KAQ+LG++I +E++ + L+ Sbjct: 635 KTDLLVAGEAAGSKLTKAQELGIEIWDEQKLVDLMA 670 >gi|258544861|ref|ZP_05705095.1| DNA ligase, NAD-dependent [Cardiobacterium hominis ATCC 15826] gi|258519884|gb|EEV88743.1| DNA ligase, NAD-dependent [Cardiobacterium hominis ATCC 15826] Length = 668 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 251/705 (35%), Positives = 382/705 (54%), Gaps = 48/705 (6%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 L++L +EI HD YY P+I D+EYDAL R A+ A + + + P ++G Sbjct: 6 RLAALREEIRAHDHAYYVLDNPLIADAEYDALLRELRALEAASGEPVPA---DSPSQRVG 62 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G+ + + V H++P LSL+ +++ E+ F+ R+ D + + + EPK DG I Sbjct: 63 GKADGAFAPVAHAVPMLSLDNVFSEEEFAAFVKRLQERL---DHDELLLSAEPKFDGLAI 119 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198 ++RYE G AA RGDG +GEDV+A +R I IP L P +IE+RGE+Y+ K F Sbjct: 120 SLRYENGVLTRAATRGDGATGEDVTANVRTIRAIPLRLLDATPPAVIEIRGEIYMPKAAF 179 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSEIFAKGQYE 256 ALN G K +ANPRNAA+G LR+L+P +R+L+F+ +GLG Sbjct: 180 AALNAAAERDGGKTFANPRNAAAGSLRQLDPAITASRHLSFYAYGLGAHDGYALPATYSA 239 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L + R G PV ++ V+Y + + R LPY+IDG+VYK D ++ Q+ G Sbjct: 240 LLAQYRDWGVPVCPLQESLSSAAAAVAYMDALGKKRHDLPYEIDGVVYKADRYADQQAAG 299 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +R+PRW I+ KF + +T + ID+Q+GRTG +TPVARL PV +GG +TNATLHN Sbjct: 300 FVSRAPRWAIAWKFPAVEKTTVVEAIDVQVGRTGAVTPVARLRPVEVGGVTVTNATLHNA 359 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D + +D+RVGD V V+RAG+VIP++V ++ R D+QPF+ P+ CP+ Sbjct: 360 DEVAR-----------KDVRVGDTVFVRRAGDVIPEIVKTVLEARPADSQPFAMPTHCPV 408 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C+S ++R A RC+GGL C AQ+++ L HF SR A +I+GLG + ++ + Sbjct: 409 CESEIIRPEGE------AVARCSGGLHCRAQRVQALIHFASRKALDIQGLGDKLIEQLVQ 462 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + PAD+F L + + + S N+ ++ + +L RFI++ Sbjct: 463 D----GRVHSPADLFAL------TLADWAALPRMAEKSAQNILAALEAAKATTLPRFIYA 512 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG A LA++Y L + +G ++AQ I F+ Sbjct: 513 LGIREVGNVSAELLARHYRELPALLAASE----------DDLQAIDGIGPVMAQYIRHFF 562 Query: 617 QNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + N + AL P + S + K +V TGTL + R +A ++ +LG Sbjct: 563 LDDANRAVIAALQAAGIHWPVVEAPVIAADSPLAGKTVVITGTLPTMTRDEAAAHIARLG 622 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ +S+KTD ++ GD GSKLEKAQ LGV I++E Q L L+ Sbjct: 623 GKTASAVSKKTDYLLAGDKAGSKLEKAQSLGVAIIDEAQLLAWLE 667 >gi|227517688|ref|ZP_03947737.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0104] gi|257083650|ref|ZP_05578011.1| NAD-dependent DNA ligase [Enterococcus faecalis Fly1] gi|227074843|gb|EEI12806.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0104] gi|256991680|gb|EEU78982.1| NAD-dependent DNA ligase [Enterococcus faecalis Fly1] gi|315146961|gb|EFT90977.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4244] Length = 676 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 240/714 (33%), Positives = 383/714 (53%), Gaps = 53/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L++ A L ++++ + YY +P + D YD L + I FPDL P Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ K H IP SL ++ ED+ F R+ + K + + E Sbjct: 63 DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++RYE G FV A RGDG GE+++ +R + ++P L+ I +EVRGE Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ R LN F++ + + Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+EF+ Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G ++ Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CPIC S +V A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L + ++ AD++ L Q + + + S N+Y +I + S+ Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ IA Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLSTLSRAT----------AEEIVALDSIGETIAD 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++V +++N + L K V S ++K +V TG L + R + Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + L Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672 >gi|221632243|ref|YP_002521464.1| DNA ligase, NAD-dependent [Thermomicrobium roseum DSM 5159] gi|254781441|sp|B9KXM2|DNLJ_THERP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|221155911|gb|ACM05038.1| DNA ligase, NAD-dependent [Thermomicrobium roseum DSM 5159] Length = 695 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 233/720 (32%), Positives = 360/720 (50%), Gaps = 53/720 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + R + L + I ++ YY + P + D+EYDAL +P+L P+ P Sbjct: 15 EVRARVEELRRLIQRYNYEYYVLNAPTVSDAEYDALMLELRRWEEQYPELV---TPDSPT 71 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G V H IP LSL +++ ++R + R+YR ++D + F EPK+D Sbjct: 72 QRVGAPPAEGFATVQHEIPMLSLGNVFSDGEIRAWAERVYRLSGRQD---VEFVTEPKVD 128 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRGEV 191 G +++ Y G V A RGDG++GEDV+ +R I IP L P ++EVRGEV Sbjct: 129 GLAVSLLYRDGVLVRGATRGDGYTGEDVTNNVRTIRMIPLRLYPPEGVIVPPVLEVRGEV 188 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSEI 249 Y++ DF LN E G +ANPRNAA+G LR+L+P+ +R L F +G Sbjct: 189 YMNVRDFERLNRERGEQGLPLFANPRNAAAGSLRQLDPSVTASRPLRFAAWDIGLWEGTE 248 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 L+ +R L PV R + +++ + + R L ++ DG+V KV++ Sbjct: 249 PPATHLATLEFLRQLQIPVVPDYRLCRSVDEVIAECHRWQERRDALEFEADGVVIKVNDR 308 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +L + LG R PR ++KF + +T + D+ +GRTG LTPVA LEPV IGG ++ Sbjct: 309 ALYQALGVVGREPRGATAYKFPAHEKTTIVRDVIWSVGRTGKLTPVAVLEPVEIGGVIVE 368 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHNE+ I+ L + +GD V+V+R G+VIPKVV I R D +P Sbjct: 369 RATLHNEEEIRRL-----------GLLIGDAVVVQRRGDVIPKVVATIPQRRDGDERPVD 417 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP+C + +R R C A+ ++HF SR+A +IEGLG++ Sbjct: 418 IPRQCPVCGAHTIRLEGE-------VDRYCPNPNCPARLKASVRHFASRNAMDIEGLGEK 470 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 D F IR D++ + ++ + GFG V NL +I +N Sbjct: 471 ISDLFVD----LGIIRSLPDLYEI------DWARVLQLEGFGPKKVENLRKAIEASKNRP 520 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+F+LGIRHVG A+ LA ++ S + L+++P G +A Sbjct: 521 FARFLFALGIRHVGERNAQLLADHFRSIDRLMEAT----------IDELLQIPGFGPAVA 570 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKA 666 Q++ EF++ P+N +E + V + K +V TG L+ + R +A Sbjct: 571 QSVFEFFREPKNREMIERFRRLGVRMAEEEAAAVATVQGPLAGKTVVLTGRLETLTRSQA 630 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 +E + + GA V+ +SRKTD + G +PGSK +AQQLGV I+ EE L +L++ + Sbjct: 631 EELLRRAGAHVTDSVSRKTDYVFAGADPGSKYVRAQQLGVPILGEEDLLRMLRESGIEVE 690 >gi|256959858|ref|ZP_05564029.1| NAD-dependent DNA ligase [Enterococcus faecalis Merz96] gi|293385046|ref|ZP_06630880.1| DNA ligase, NAD-dependent [Enterococcus faecalis R712] gi|293389317|ref|ZP_06633778.1| DNA ligase, NAD-dependent [Enterococcus faecalis S613] gi|312906035|ref|ZP_07765048.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 512] gi|312909381|ref|ZP_07768237.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 516] gi|256950354|gb|EEU66986.1| NAD-dependent DNA ligase [Enterococcus faecalis Merz96] gi|291077724|gb|EFE15088.1| DNA ligase, NAD-dependent [Enterococcus faecalis R712] gi|291081339|gb|EFE18302.1| DNA ligase, NAD-dependent [Enterococcus faecalis S613] gi|310628030|gb|EFQ11313.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 512] gi|311290405|gb|EFQ68961.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 516] Length = 676 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 241/714 (33%), Positives = 384/714 (53%), Gaps = 53/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L++ A L ++++ + YY +P + D YD L + I FPDL P Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ K H IP SL ++ ED+ F R+ + K + + E Sbjct: 63 DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++RYE G FV A RGDG GE+++ +R + ++P L+ I +EVRGE Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ R LN F++ + + Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+EF+ Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G ++ Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CPIC S +V A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L + ++ AD++ L Q + + + S N+Y +I + S+ Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+IIA Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLSTLSRAT----------AEEIVALDSIGEIIAD 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++V +++N + L K V S ++K +V TG L + R + Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + L Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672 >gi|312900318|ref|ZP_07759629.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0470] gi|311292506|gb|EFQ71062.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0470] Length = 676 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 239/714 (33%), Positives = 382/714 (53%), Gaps = 53/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L++ A L ++++ + YY +P + D YD L + I FPDL P Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ K H IP SL ++ ED+ F R+ + K + + E Sbjct: 63 DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++RYE G FV A RGDG GE+++ +R + ++P L+ I +EVRGE Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ R LN F++ + + Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 AK Q+E L+++ +GF N + + + +Y E RSTL Y+IDG+V KV+EF+ Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLTYEIDGIVIKVNEFA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G ++ Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CPIC S +V A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L + ++ AD++ L Q + + + S N+Y +I + S+ Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ IA Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRAT----------AEEIVALDSIGETIAD 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++V +++N + L K V S ++K +V TG L + R + Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + L Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672 >gi|332852097|ref|ZP_08433924.1| DNA ligase [Acinetobacter baumannii 6013150] gi|332867495|ref|ZP_08437648.1| DNA ligase [Acinetobacter baumannii 6013113] gi|332872654|ref|ZP_08440622.1| DNA ligase [Acinetobacter baumannii 6014059] gi|332729469|gb|EGJ60808.1| DNA ligase [Acinetobacter baumannii 6013150] gi|332733912|gb|EGJ65057.1| DNA ligase [Acinetobacter baumannii 6013113] gi|332739183|gb|EGJ70042.1| DNA ligase [Acinetobacter baumannii 6014059] Length = 683 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 253/720 (35%), Positives = 380/720 (52%), Gaps = 47/720 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I +++ L Q I+ H+ YY +P I DSEYD L + A+ +P+L ++ Sbjct: 6 MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQA--- 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+GG+ VTH +P LSL ++N EDL F R+ + + + +E Sbjct: 63 DSPTTKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERL---PNQKVQYEVE 119 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188 K+DG I++ YE G V RGDG +GED++ ++ I +P+VL EI +EVR Sbjct: 120 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 179 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247 GEV + K+ F LN + A G K +ANPRNAA+G LR+L+P F+ +G+ + Sbjct: 180 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 239 Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ LQ + LGF + N+ + Y +++ R L +IDG+V KV Sbjct: 240 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 299 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q+QLG +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG Sbjct: 300 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 359 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++N TLHN I L D+R+GD V V R G+VIPKV + R +A+ Sbjct: 360 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 408 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C S VV A RC+GGL C+AQ++E ++HFVSR A +IEGL Sbjct: 409 VVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 462 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ + ++ ADI+ L ++ + I G+ SV NL D+I + Sbjct: 463 GDRWVESLLR----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASK 514 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI++LGIR VG AR LA + + + + +L + P VGD Sbjct: 515 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA----------NVEALKKTPDVGD 564 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I A+ I +F+ P NI ++ L+ + + V TGTL+++ R +A Sbjct: 565 ITAEWIADFFLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 623 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 + + LGA VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y TL Sbjct: 624 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTLS 683 >gi|294085891|ref|YP_003552651.1| DNA ligase (NAD+) [Candidatus Puniceispirillum marinum IMCC1322] gi|292665466|gb|ADE40567.1| DNA ligase (NAD+) [Candidatus Puniceispirillum marinum IMCC1322] Length = 696 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 298/719 (41%), Positives = 434/719 (60%), Gaps = 32/719 (4%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 R +S + A +EL+ L + I+YHD Y+ P I D++YD L R +A+ +F Sbjct: 2 TRDHPDPSKMSADDAAQELAYLAERIAYHDRKYHGEDAPDISDADYDMLVARNNALEASF 61 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P+L R P+ P ++G ++ S K+ H+ P LSL ++ ED+ F+TRI +F + Sbjct: 62 PELIR---PDSPSQRVGTMVSGSFGKIRHAQPMLSLSNGFSAEDIADFVTRIRKFLSLAE 118 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 + I FT EPKIDG +++RYEKG V AA RGDG GEDV+A IR + IP+ L +P Sbjct: 119 TDDIAFTAEPKIDGLSLSLRYEKGHLVQAATRGDGSEGEDVTANIRTVDAIPKTLPDTVP 178 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVH 241 +I EVRGEVY+ + DFLALN + G K +ANPRNAA+G LR+ + + +R L FF + Sbjct: 179 DIFEVRGEVYMDRKDFLALNADQERKGGKIFANPRNAAAGSLRQKDVSITGSRNLAFFAY 238 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 +G+ S A + L +R GF VN+ R + +++ Y+ + S R++L YDIDG Sbjct: 239 SMGEASAPVAATHTDFLAALRDFGFSVNDLSRHCLSLDDMLATYDAIGSQRASLDYDIDG 298 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYKVD Q++LG+ AR+PRW ++HKF +QA T ++ IDIQ+GRTG LTPVARL PV Sbjct: 299 VVYKVDRHDYQERLGQVARAPRWALAHKFPAEQAETTIIKIDIQVGRTGALTPVARLTPV 358 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 +GG +++NATLHNED I +DIR+GD V+++RAG+VIP+VV ++ +R Sbjct: 359 TVGGVVVSNATLHNEDEIAR-----------KDIRIGDHVIIQRAGDVIPQVVRVLDEKR 407 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 D Q F+FP CP+C S +R A RCTGGLAC AQ +E+LKHFVSRDAF Sbjct: 408 PDDVQIFTFPDRCPVCDSDAIRPEGE------AVRRCTGGLACEAQLVEQLKHFVSRDAF 461 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +IEGLG +Q++ F + ++ PADIF L+ R+ K+ + G+G S+ NL+ S Sbjct: 462 DIEGLGARQIEQFLE----LGWVKTPADIFRLETRRD----KLATLDGYGAKSLDNLFAS 513 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI--NNIIAHNNDDWLSLI 599 IN RR I LERFI++LGIR VG +R LA +Y + N + + +L+ Sbjct: 514 INARRTIGLERFIYALGIRQVGQATSRLLALHYGDLDMMMSALDPENTESEHEIAIAALV 573 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 + +GD +A I F+ + + V L E+S + S + K +VFTGTL Sbjct: 574 DIDQIGDAMAADICRFFGDTAHRNIVNDLASELSILPPERP-SEDSAVSGKTVVFTGTLA 632 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++ R +A+ LGA VS +S KTD +I G + GSK KA +LGV +++E+++ L+ Sbjct: 633 RMSRAEAKAKAEALGAKVSGSVSAKTDYLIAGADAGSKARKAAELGVTVLSEDEWRALI 691 >gi|258621988|ref|ZP_05717017.1| DNA ligase [Vibrio mimicus VM573] gi|258585741|gb|EEW10461.1| DNA ligase [Vibrio mimicus VM573] Length = 670 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 243/712 (34%), Positives = 382/712 (53%), Gaps = 48/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + L L Q + H YY P I D+EYD L R + A P+L P+ Sbjct: 1 MSNVEQRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG V H IP LSL+ ++ +L F R+ F EPK Sbjct: 58 PSLRVGGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRI--PAVQQSHFCCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192 +DG +++ YE G AA RGDG +GE+++ +R I +IP L + + +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGSDFPVRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE-IF 250 + K F ALN + G K + NPRNAA+G LR+L+ R L F+ + +G Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSRITAQRPLAFYAYSVGIIDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A Y+ +++ G P+ + + + ++Y ++ R +L Y+IDG+V KVD+ Sbjct: 236 ATSHYQRFLQLKRWGLPICPETKPVTSLIEVKAFYQDILQRRQSLAYEIDGVVIKVDDIR 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++N Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L + VGD V+++RAG+VIP++V +++ R DA+P F Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPIDAKPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS + R A RCTGGL C AQ+ E LKHFVSR A +++GLG + Sbjct: 405 PACCPVCQSEIERIEGE------AVARCTGGLICQAQRKEALKHFVSRKAMDVDGLGDKV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + PAD+F L+ ++ + G S N+ D++NK + +L Sbjct: 459 IEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAKQTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA+++L+ AQ LI VP VG ++A Sbjct: 509 PRFLYALGIREVGEATALNLAQHFLTLDAIAQA----------SMDQLIEVPDVGGVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ RN + L++ + S + K +V TG+ ++ R+ A+ Sbjct: 559 HLHAFFAQSRNQQVIAELIELGITWPAMAVASSIAADSALAGKVVVLTGSFTQLSRNDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S+ TDI+ G+ GSKL KA +LG+++++E+ + L+ Sbjct: 619 AALQALGAKVTGSVSKNTDIVFAGEAAGSKLSKAAELGIQVLDEQALIDFLK 670 >gi|213156587|ref|YP_002318248.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB0057] gi|215484469|ref|YP_002326704.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB307-0294] gi|301347734|ref|ZP_07228475.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB056] gi|301512482|ref|ZP_07237719.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB058] gi|301594386|ref|ZP_07239394.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB059] gi|221222446|sp|A3M2U3|DNLJ_ACIBT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254778154|sp|B7GZ71|DNLJ_ACIB3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254778155|sp|B7I790|DNLJ_ACIB5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781253|sp|B0V8E4|DNLJ_ACIBY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|193076578|gb|ABO11237.2| DNA ligase [Acinetobacter baumannii ATCC 17978] gi|213055747|gb|ACJ40649.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB0057] gi|213986610|gb|ACJ56909.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB307-0294] Length = 678 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 253/720 (35%), Positives = 380/720 (52%), Gaps = 47/720 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I +++ L Q I+ H+ YY +P I DSEYD L + A+ +P+L ++ Sbjct: 1 MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+GG+ VTH +P LSL ++N EDL F R+ + + + +E Sbjct: 58 DSPTTKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERL---PNQKVQYEVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188 K+DG I++ YE G V RGDG +GED++ ++ I +P+VL EI +EVR Sbjct: 115 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 174 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247 GEV + K+ F LN + A G K +ANPRNAA+G LR+L+P F+ +G+ + Sbjct: 175 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 234 Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ LQ + LGF + N+ + Y +++ R L +IDG+V KV Sbjct: 235 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 294 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q+QLG +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 354 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++N TLHN I L D+R+GD V V R G+VIPKV + R +A+ Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 403 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C S VV A RC+GGL C+AQ++E ++HFVSR A +IEGL Sbjct: 404 VVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ + ++ ADI+ L ++ + I G+ SV NL D+I + Sbjct: 458 GDRWVESLLR----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASK 509 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI++LGIR VG AR LA + + + + +L + P VGD Sbjct: 510 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA----------NVEALKKTPDVGD 559 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I A+ I +F+ P NI ++ L+ + + V TGTL+++ R +A Sbjct: 560 ITAEWIADFFLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 + + LGA VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y TL Sbjct: 619 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTLS 678 >gi|169797009|ref|YP_001714802.1| DNA ligase [Acinetobacter baumannii AYE] gi|169149936|emb|CAM87830.1| DNA ligase [Acinetobacter baumannii AYE] Length = 691 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 253/720 (35%), Positives = 380/720 (52%), Gaps = 47/720 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I +++ L Q I+ H+ YY +P I DSEYD L + A+ +P+L ++ Sbjct: 14 MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQA--- 70 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+GG+ VTH +P LSL ++N EDL F R+ + + + +E Sbjct: 71 DSPTTKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERL---PNQKVQYEVE 127 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188 K+DG I++ YE G V RGDG +GED++ ++ I +P+VL EI +EVR Sbjct: 128 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 187 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247 GEV + K+ F LN + A G K +ANPRNAA+G LR+L+P F+ +G+ + Sbjct: 188 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 247 Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ LQ + LGF + N+ + Y +++ R L +IDG+V KV Sbjct: 248 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 307 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q+QLG +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG Sbjct: 308 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 367 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++N TLHN I L D+R+GD V V R G+VIPKV + R +A+ Sbjct: 368 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 416 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C S VV A RC+GGL C+AQ++E ++HFVSR A +IEGL Sbjct: 417 VVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 470 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ + ++ ADI+ L ++ + I G+ SV NL D+I + Sbjct: 471 GDRWVESLLR----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASK 522 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI++LGIR VG AR LA + + + + +L + P VGD Sbjct: 523 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA----------NVEALKKTPDVGD 572 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I A+ I +F+ P NI ++ L+ + + V TGTL+++ R +A Sbjct: 573 ITAEWIADFFLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 631 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 + + LGA VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y TL Sbjct: 632 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTLS 691 >gi|29375318|ref|NP_814472.1| DNA ligase, NAD-dependent [Enterococcus faecalis V583] gi|227554838|ref|ZP_03984885.1| DNA ligase, NAD-dependent [Enterococcus faecalis HH22] gi|256761492|ref|ZP_05502072.1| NAD-dependent DNA ligase [Enterococcus faecalis T3] gi|257415292|ref|ZP_05592286.1| NAD-dependent DNA ligase [Enterococcus faecalis AR01/DG] gi|257418334|ref|ZP_05595328.1| NAD-dependent DNA ligase [Enterococcus faecalis T11] gi|81437298|sp|Q837V6|DNLJ_ENTFA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|29342778|gb|AAO80542.1| DNA ligase, NAD-dependent [Enterococcus faecalis V583] gi|227176007|gb|EEI56979.1| DNA ligase, NAD-dependent [Enterococcus faecalis HH22] gi|256682743|gb|EEU22438.1| NAD-dependent DNA ligase [Enterococcus faecalis T3] gi|257157120|gb|EEU87080.1| NAD-dependent DNA ligase [Enterococcus faecalis ARO1/DG] gi|257160162|gb|EEU90122.1| NAD-dependent DNA ligase [Enterococcus faecalis T11] gi|315031451|gb|EFT43383.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0017] gi|315166929|gb|EFU10946.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1341] gi|315575350|gb|EFU87541.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0309B] gi|315581380|gb|EFU93571.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0309A] Length = 676 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 240/714 (33%), Positives = 383/714 (53%), Gaps = 53/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L++ A L ++++ + YY +P + D YD L + I FPDL P Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ K H IP SL ++ ED+ F R+ + K + + E Sbjct: 63 DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++RYE G FV A RGDG GE+++ +R + ++P L+ I +EVRGE Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ R LN F++ + + Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+EF+ Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G ++ Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CPIC S +V A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L + ++ AD++ L Q + + + S N+Y +I + S+ Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ IA Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRAT----------AEEIVALDSIGETIAD 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++V +++N + L K V S ++K +V TG L + R + Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLAQYTREE 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + L Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672 >gi|261211985|ref|ZP_05926271.1| DNA ligase [Vibrio sp. RC341] gi|260838593|gb|EEX65244.1| DNA ligase [Vibrio sp. RC341] Length = 670 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 243/712 (34%), Positives = 379/712 (53%), Gaps = 48/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + L+ L Q + H YY P I D+EYD L R I P+ P+ Sbjct: 1 MSNVEQRLTELRQTLHEHGIRYYVEDAPTIPDAEYDRLMRELLDIEAQHPEWI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG V H IP LSL+ ++ +L F R+ F EPK Sbjct: 58 PSLRVGGRPLDGFDSVIHEIPMLSLDNAFDDAELESFYRRMTDRI--PAVQQSHFCCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192 +DG +++ YE G AA RGDG +GE+++ +R I +IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGSDFPRRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIF- 250 + K F ALN + G K + NPRNAA+G LR+L+ R L F+ + +G Sbjct: 176 MPKAGFDALNARALKKGEKQFVNPRNAAAGSLRQLDSRITAQRPLAFYAYSVGIIEGGML 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A Y+ +++ G P+ + + + +Y ++ R L Y+IDG+V KVD+ + Sbjct: 236 ASSHYQRFLQLKSWGLPICPETKLVASLSEVKDFYQDILQRRGALAYEIDGVVIKVDDIT 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++N Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L + VGD V+++RAG+VIP++V +++ R DA+ F Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPVDAKTILF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS + R A RCTGGL C AQ+ E LKHFVSR A ++EGLG + Sbjct: 405 PTHCPVCQSDIERIEGE------AVARCTGGLVCQAQRKEALKHFVSRKALDVEGLGDKV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + PAD+F L+ ++ + G S N+ D+++K + +L Sbjct: 459 IEQLVDRE----MVATPADLFRLRA------GELTILERMGPKSAQNVIDALHKAKQTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +F+++LGIR VG A +LA+++L+ + AQ LI V VG+++A Sbjct: 509 PKFLYALGIREVGEATALNLAQHFLTLEAIAQAT----------MEQLIEVSDVGNVVAG 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ RN + L++ S + K +V TG+ ++ R+ A+ Sbjct: 559 HLHAFFAQSRNQKVIAELIELGVTWPAMAAISSTEADSVLAGKVVVLTGSFNQLSRNDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S+ TDI+ G+ GSKL KA +LGV +M+E+ + LL+ Sbjct: 619 AALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGVAVMDEQALIELLK 670 >gi|258514074|ref|YP_003190296.1| DNA ligase, NAD-dependent [Desulfotomaculum acetoxidans DSM 771] gi|257777779|gb|ACV61673.1| DNA ligase, NAD-dependent [Desulfotomaculum acetoxidans DSM 771] Length = 677 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 252/708 (35%), Positives = 395/708 (55%), Gaps = 47/708 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + +++A K + L +EI H+ YY P+I D+EYD L A+ FPDL Sbjct: 1 MELKEAGKRVLELRREIEEHNYNYYVMDNPVIGDAEYDRLMLELTALEQQFPDLL---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG+ VTH +P LSL ++ ++L+ F R+ + + +E Sbjct: 58 HSPTQRVGGKPKEGFTTVTHRVPMLSLANSFSEQELKDFDRRVRGAL---AGEEVNYVVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YE G F A RGDG +GED++ ++ I ++ L +P ++EVRGEV Sbjct: 115 LKIDGLAVSLFYENGLFQRGATRGDGETGEDITENLKTIRSLSLQLKEAVP-VLEVRGEV 173 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250 Y+S F LN A + +ANPRNAA+G LR+L+P + R L+ F++ +G + Sbjct: 174 YMSGEAFRRLNKSREAEDQPLFANPRNAAAGSLRQLDPRITSSRQLSAFIYAVGYYEGVS 233 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 G E L+ ++ LGFPV+ R+ +++Y + ++ R LP+ IDGLV KVD Sbjct: 234 LSGHEEALRYLQDLGFPVSRYYRKFADIEEVLAYCRDWEARRFELPFAIDGLVIKVDSLE 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q +LG A+SPRW I++KF +QA T++ DI I +GRTG+LTP A L+PV + G+ ++ Sbjct: 294 QQLKLGATAKSPRWSIAYKFPPEQAVTKVKDIIINVGRTGVLTPTALLDPVRLAGSTVSR 353 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED IK +D+++GD V+V++AGE+IP+VV ++ +R PF Sbjct: 354 ATLHNEDIIK-----------EKDVQIGDTVVVQKAGEIIPEVVRVLSEKRSGGEIPFKM 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P +CP C ++VVR AA RCTG AC +Q E L HFVSR A +I GLG Sbjct: 403 PQYCPDCGAKVVRLEGE------AASRCTGM-ACPSQLREGLIHFVSRGAMDIAGLGPAV 455 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + + I AD++ L+ + + FG SV NL ++ + + SL Sbjct: 456 ITQLLDT----GLIHDAADLYNLRYEDLVN------LERFGQKSVQNLLQALEQSKKASL 505 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R IF+LGIRHVG A++LA+++ S QN L+ +P +G IA Sbjct: 506 GRLIFALGIRHVGERAAKTLARHFGSLQNLMAA----------GLEELVGIPEIGTKIAG 555 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +I+ F++ +N+ V+ L++ + + E + + +E K V TGTL+ R A+++ Sbjct: 556 SIITFFEQEQNLSVVDKLVRAGVNIVEKDTEASTAGSLEGKTFVLTGTLRSFTRETAKQF 615 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + LG V+A +S+ TD ++ G+NPGSK +KA +LG+K+++E F L Sbjct: 616 IEGLGGKVTASVSKSTDYVLAGENPGSKYDKAVKLGIKVIDEAYFKEL 663 >gi|262172020|ref|ZP_06039698.1| DNA ligase [Vibrio mimicus MB-451] gi|261893096|gb|EEY39082.1| DNA ligase [Vibrio mimicus MB-451] Length = 670 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 243/712 (34%), Positives = 382/712 (53%), Gaps = 48/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + L L Q + H YY P I D+EYD L R + A P+L P+ Sbjct: 1 MSNVEQRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG V H IP LSL+ ++ +L F R+ F EPK Sbjct: 58 PSLRVGGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRI--PAVQQSHFCCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192 +DG +++ YE G AA RGDG +GE+++ +R I +IP L + + +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGSDFPVRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE-IF 250 + K F ALN + G K + NPRNAA+G LR+L+ R L F+ + +G Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSRITAQRPLAFYAYSVGIIDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A Y+ +++ G P+ + + + ++Y ++ R +L Y+IDG+V KVD+ Sbjct: 236 ATSHYQRFLQLKRWGLPICPETKPVTSLIEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++N Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L + VGD V+++RAG+VIP++V +++ R DA+P F Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPIDAKPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS + R A RCTGGL C AQ+ E LKHFVSR A +++GLG + Sbjct: 405 PACCPVCQSEIERIEGE------AVARCTGGLICQAQRKEALKHFVSRKAMDVDGLGDKV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + PAD+F L+ ++ + G S N+ D++NK + +L Sbjct: 459 IEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAKQTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA+++L+ AQ LI VP VG ++A Sbjct: 509 PRFLYALGIREVGEATALNLAQHFLTLDAIAQA----------SMDQLIEVPDVGGVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ RN + L++ + S + K +V TG+ ++ R+ A+ Sbjct: 559 HLHAFFAQSRNQQVIAELIELGITWPAMAVASSIAADSALAGKVVVLTGSFTQLSRNDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S+ TDI+ G+ GSKL KA +LG+++++E+ + L+ Sbjct: 619 AALQALGAKVTGSVSKNTDIVFAGEAAGSKLSKAAELGIQVLDEQALIDFLK 670 >gi|304312656|ref|YP_003812254.1| DNA ligase, NAD-dependent [gamma proteobacterium HdN1] gi|301798389|emb|CBL46613.1| DNA ligase, NAD-dependent [gamma proteobacterium HdN1] Length = 677 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 253/717 (35%), Positives = 392/717 (54%), Gaps = 48/717 (6%) Query: 12 LSIEQA--RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 ++ A R+E +L ++ H+ YY P + DSEYD L +R A+ A PDL Sbjct: 1 MNHSSASDREEAQALRAQLQEHNYRYYVLDDPSVPDSEYDRLFQRLLALEQAHPDLITQ- 59 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 + P ++G + +V H +P LSL+ ++N +L F RI+ K + + F Sbjct: 60 --DSPTQRVGAAPLAAFKQVQHRVPMLSLDNVFNAAELLAFEKRIHDRL--KSEVPVDFV 115 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188 EPK+DG +++ Y G FV A RGDG +GED++ +R + T+P L P +EVR Sbjct: 116 CEPKLDGLAVSLLYRDGLFVQGATRGDGETGEDITQNLRTLSTVPLRLMGEGFPSELEVR 175 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVY+ K LN + G K +ANPRNAA+G LR+L+P R L + +G+G + Sbjct: 176 GEVYMPKAGLAELNQRQTSAGDKTFANPRNAAAGSLRQLDPRITAKRPLELYCYGIGHVA 235 Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 +L + GF VN +R A YY+ + + R L YDIDG+VYKV Sbjct: 236 GGTLPARHSAILAALGKWGFRVNPEIRSAANAAECQRYYDALLARRDALAYDIDGVVYKV 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 DE +LQ++LG +R+PRW I+HKF ++ TRLLD++ Q+GRTG +TPVARLEPV +GG Sbjct: 296 DELALQQRLGFVSRAPRWAIAHKFPAQEEITRLLDVEFQVGRTGAVTPVARLEPVYVGGV 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++NATLHN D + L DI VGD V+V RAG+VIP++V ++ R P A Sbjct: 356 TVSNATLHNMDEVARL-----------DIHVGDTVVVLRAGDVIPRIVRVLPERRPPYAP 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ CP+C S + R+ A RC+GGL C AQ E +KHF +R A +I+GL Sbjct: 405 VVMLPAACPVCGSAITREEGE------AVARCSGGLFCPAQTKEAIKHFSARRAMDIDGL 458 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + + AD+++ ++ + + G+ S L +I K R Sbjct: 459 GDKIVDQLVDT----GLVASVADLYS------LASASLAALERMGEKSADKLVAAIAKSR 508 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 N + +RF+F+LGIR VG A++LA++Y + + D SL+ VP +G Sbjct: 509 NTTFQRFLFALGIREVGEATAQTLARHYETLDALLRA----------DEASLLEVPDIGP 558 Query: 607 IIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + A+ IV+F+ P N ++ LL E+ + + ++ LV TG+L ++ R + Sbjct: 559 VSARNIVQFFAQPHNREVLDRLLAAEIHWPAPVKADVSALPLSDQTLVLTGSLSQLSRDE 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A +++ LGA VS +S+ T + G+ GSKL +A+ LG+ + E++ + LL+++ Sbjct: 619 AGDHLRALGAKVSGSVSKNTTAVYAGEKAGSKLARAESLGIPVYTEDELMSLLREHG 675 >gi|50084060|ref|YP_045570.1| DNA ligase [Acinetobacter sp. ADP1] gi|81393600|sp|Q6FDW0|DNLJ_ACIAD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|49530036|emb|CAG67748.1| DNA ligase [Acinetobacter sp. ADP1] Length = 676 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 252/717 (35%), Positives = 378/717 (52%), Gaps = 47/717 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + ++ L Q I+ H+ YY +P I D+EYD L + A+ +P+L +++ Sbjct: 2 MQPADIVAQMRQLIQLIAKHNHAYYVMDQPSITDNEYDQLFHQLKALEAEYPELTQADT- 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P N++GG+ VTH++P LSL ++N EDL F RI + I + +E Sbjct: 61 --PTNRVGGQALSKFETVTHAVPMLSLGNVFNQEDLFAFARRIEERL---PNQQIQYDVE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE---IIEVR 188 K+DG I++ YE G V RGDG +GED++ ++ I +P+ L + E +EVR Sbjct: 116 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKHLQHHSVETPRFLEVR 175 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLG-KT 246 GEV + K F LN A G K +ANPRNAA+G LR+L+P F+ +G+ Sbjct: 176 GEVLMPKQGFERLNAANEAKGEKTFANPRNAAAGSLRQLDPAIAASRPLAFYAYGIAQCE 235 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 +E LQ + LGF + ++ + Y +++ R L +IDG+V KV Sbjct: 236 PHHGLGSMHESLQWLTQLGFEIAERQFLCSSIQEVQQCYEQIQQERPDLAVEIDGMVIKV 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q+QLG +R PRW ++KF + A T + +ID Q+GRTG LTPVARL+PV +GG Sbjct: 296 DDLKQQQQLGFLSREPRWATAYKFPAEVAMTTVENIDWQVGRTGTLTPVARLQPVFVGGV 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++N TLHN I L D+RVGDRV V R+G+VIPKV + R A+ Sbjct: 356 TVSNVTLHNIGEIHRL-----------DVRVGDRVSVYRSGDVIPKVEKVWPEFRPELAE 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C S VV A RC+GGL C+AQ++E ++HFVSR A +IEGL Sbjct: 405 IVQLPEQCPVCSSPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKALDIEGL 458 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ ++ ADI+ L ++ ++ I G+ SV NL D+I + Sbjct: 459 GDRWVESLLH----LDLLKDVADIYHLHEHRE----QLLTIEKMGEKSVQNLMDAIEASK 510 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI++LGIR VG AR LA + + Q D +L + P VGD Sbjct: 511 KTTLARFIYALGIRGVGETTARMLANTFQTLDALKQA----------DIEALKKTPDVGD 560 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I A+ I +F+ NI ++ LL + + V TGTL+ + R +A Sbjct: 561 ITAEWIYDFFLAEHNIEVLDRLLAAG-IHWDAPLAPTRQPLNGESWVVTGTLETMGRDEA 619 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 + + LGA VS +S KT ++ G+ GSKL+KA++L +++MNE++FL L QY+ Sbjct: 620 TQRLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAEKLQIRVMNEQEFLAFLAQYSA 676 >gi|256957407|ref|ZP_05561578.1| NAD-dependent DNA ligase [Enterococcus faecalis DS5] gi|257077597|ref|ZP_05571958.1| NAD-dependent DNA ligase [Enterococcus faecalis JH1] gi|294779927|ref|ZP_06745308.1| DNA ligase (NAD(+)) [Enterococcus faecalis PC1.1] gi|256947903|gb|EEU64535.1| NAD-dependent DNA ligase [Enterococcus faecalis DS5] gi|256985627|gb|EEU72929.1| NAD-dependent DNA ligase [Enterococcus faecalis JH1] gi|294452976|gb|EFG21397.1| DNA ligase (NAD(+)) [Enterococcus faecalis PC1.1] gi|295114065|emb|CBL32702.1| DNA ligase, NAD-dependent [Enterococcus sp. 7L76] gi|315036101|gb|EFT48033.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0027] gi|315172192|gb|EFU16209.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1346] Length = 676 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 240/714 (33%), Positives = 383/714 (53%), Gaps = 53/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L++ A L ++++ + YY +P + D YD L + I FPDL P Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ K H IP SL ++ ED+ F R+ + K + + E Sbjct: 63 DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++RYE G FV A RGDG GE+++ +R + ++P L+ I +EVRGE Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ R LN F++ + + Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+EF+ Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G ++ Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CPIC S +V A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L + ++ AD++ L Q + + + S N+Y +I + S+ Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ IA Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRAT----------AEEIVALDSIGETIAD 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++V +++N + L K V S ++K +V TG L + R + Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + L Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVSVWNEQEMVDALD 672 >gi|307269776|ref|ZP_07551106.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4248] gi|306513886|gb|EFM82488.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4248] Length = 676 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 240/714 (33%), Positives = 382/714 (53%), Gaps = 53/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L++ A L ++++ + YY +P + D YD L + I FPDL P Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ K H IP SL ++ ED+ F R+ + K + + E Sbjct: 63 DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++RYE G FV A RGDG GE+++ +R + ++P L+ I +EVRGE Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ R LN F++ + + Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+EF+ Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G + Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTGSR 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CPIC S +V A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L + ++ AD++ L Q + + + S N+Y +I + S+ Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ IA Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRAT----------AEEIVALDSIGETIAD 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++V +++N + L K V S ++K +V TG L + R + Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + L Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVSVWNEQEMVDALD 672 >gi|114767408|ref|ZP_01446210.1| DNA ligase, NAD-dependent [Pelagibaca bermudensis HTCC2601] gi|114540493|gb|EAU43572.1| DNA ligase, NAD-dependent [Roseovarius sp. HTCC2601] Length = 757 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 302/759 (39%), Positives = 445/759 (58%), Gaps = 59/759 (7%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 I +EALS +QAR EL L ++ + Y+ P I D++YDALKRR AI FP+ Sbjct: 11 GEIDVEALSEDQARAELERLAGLLAQANLAYHTEDAPEISDADYDALKRRNVAIEERFPE 70 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 L R + P ++G + K+ H+ +SL ++ +++R F I R+ +D Sbjct: 71 LKRE---DSPSEQVGAALAEGFGKIRHAQRMMSLSNAFDDDEVRDFDRGIRRYLGLAEDA 127 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 + FT EPKIDG +++RYE G + AA RGDG +GE+V+A R I IP+ L PE+ Sbjct: 128 PLPFTAEPKIDGLSLSLRYENGALIQAATRGDGATGENVTANARTIDDIPQQLEGA-PEL 186 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +EVRGEVY+S DF ALN+ A G KP+ANPRNAA+G LR+L+P R L FF + Sbjct: 187 LEVRGEVYMSHADFEALNERQEARGGKPFANPRNAAAGSLRQLDPEITRARPLKFFAYAW 246 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G+ S A+ Q + ++++ LGF N R + ++ +Y +++ R+TL YDIDG+V Sbjct: 247 GELSAPLAETQMDAIERLAQLGFQTNPLTRLCDGPQEMLDHYAQIEEQRATLGYDIDGVV 306 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YKV++ +LQ +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV + Sbjct: 307 YKVNDLALQARLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTV 366 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +++NATLHNEDYI G DASG +R G+DIRVGD V V RAG+VIPK+ D+ +++R Sbjct: 367 GGVVVSNATLHNEDYIAGRDASGNPIRDGKDIRVGDWVQVYRAGDVIPKIADVDLSKRPD 426 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 A+P++FP CP C S +R+ A RC+GGL C AQ +E++KHFVSR AF+I Sbjct: 427 GAEPYAFPETCPECGSEAIREEG------DAVRRCSGGLICPAQAVEKMKHFVSRSAFDI 480 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGLG +Q++ F++ I PA+IFTL+ R + +++N G+G+ S NL+D+I+ Sbjct: 481 EGLGAKQVEQFYRD----GWISEPAEIFTLRERYGSGLQQLKNREGWGEKSANNLFDAID 536 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN----------- 592 ++R I L R +FSLGIRHVG +A LA++YLS+ I+ Sbjct: 537 EKRKIELGRVLFSLGIRHVGEVVANDLARHYLSWSAMIAAIDAARPAAERYRRAEQAVEA 596 Query: 593 ---------------------------------DDWLSLIRVPLVGDIIAQAIVEFYQNP 619 W L+ V +G +A ++V P Sbjct: 597 ERVAAKSEGRRARLKEIRDAAWAEDPAVSTEARAAWDDLVGVDGIGQTVAVSLVTSMGQP 656 Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 +++ L+ ++ S + K +VFTG+L+K+ R +A+ LGA VS Sbjct: 657 TERASIDRLVAQLDIQDAERPATDGSPVAGKTVVFTGSLEKMTRAEAKARAEALGAKVSG 716 Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +S+KTDI++ G GSK KA++LGV++M+E+ +L L+ Sbjct: 717 SVSKKTDIVVAGPGAGSKEAKARELGVELMDEDAWLALI 755 >gi|218710253|ref|YP_002417874.1| NAD-dependent DNA ligase LigA [Vibrio splendidus LGP32] gi|254782307|sp|B7VIK3|DNLJ_VIBSL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218323272|emb|CAV19449.1| DNA ligase [Vibrio splendidus LGP32] Length = 670 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 248/710 (34%), Positives = 382/710 (53%), Gaps = 47/710 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 E + L L + + YH YY P I D EYD L ++ I P+L + Sbjct: 2 KESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEDENPELVTV---DS 58 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG+ +VTH IP LSL+ ++ +DL F R+ + F EPK Sbjct: 59 PSQRVGGQPLDGFTQVTHEIPMLSLDNAFSDDDLDAFNKRMSDRAPTANLE--TFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG +++ Y G V AA RGDG +GE+++ +R I +IP L PE IEVRGEV+ Sbjct: 117 LDGLAVSLLYVNGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE-IF 250 + K F LN+ + G K + NPRNAA+G LR+L+ R L F+ + +G Sbjct: 177 MPKAGFDKLNEMALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVVQGAEL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + Y+ +++ G P+ +Q ++ + +YY ++ + R TL Y+IDG+V KVD+ + Sbjct: 237 SNSHYQRFLQLKAWGLPMCPETKQLSSLEDVKAYYQDIMTRRDTLAYEIDGVVIKVDDIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+ LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEP+ +GG ++N Sbjct: 297 AQETLGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L ++VGD V+++RAG+VIP++V ++ + R A+ F Sbjct: 357 ATLHNADEIARL-----------GVKVGDSVIIRRAGDVIPQIVAVVQDRRPETAKDIVF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++GLG + Sbjct: 406 PDACPVCNSAVERVEGE------AVARCTGGLVCQAQRKEALKHFVSRKALDVDGLGVKV 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + PAD+F L S I + G S N+ ++NK ++ +L Sbjct: 460 IEQLVDRE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVSALNKAKDTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF++SLGIR VG A +LA+++ + + + L+ V +GDI+A Sbjct: 510 ARFLYSLGIREVGEATAMNLAQHFKTLELVQAATH----------EQLVEVSDIGDIVAS 559 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQE 668 + F+ +N V+ L++ +E K +V TG+L K+ R +A+ Sbjct: 560 HLTSFFSQEKNRAVVDQLIELGVNWPAIEAVADDQELPLEGKVVVLTGSLSKLGRSEAKA 619 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTDI+ G+ GSKL KAQ LG++I EE + L+ Sbjct: 620 ALQALGAKVTGSVSKKTDILFAGEAAGSKLTKAQDLGIEIRTEEDLIALI 669 >gi|84393803|ref|ZP_00992550.1| DNA ligase [Vibrio splendidus 12B01] gi|84375600|gb|EAP92500.1| DNA ligase [Vibrio splendidus 12B01] Length = 670 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 252/710 (35%), Positives = 385/710 (54%), Gaps = 47/710 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 E + L L + + YH YY P I D EYD L ++ I P+L + Sbjct: 2 KESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEEENPELVTV---DS 58 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG+ +VTH IP LSL+ ++ EDL F R+ + F EPK Sbjct: 59 PSQRVGGQPLDGFTQVTHEIPMLSLDNAFSDEDLDAFNKRMSDRAPMANLK--TFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG +++ Y G V AA RGDG +GE+++ +R I +IP L PE IEVRGEV+ Sbjct: 117 LDGLAVSLLYVNGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE-IF 250 + K F LN+ + G K + NPRNAA+G LR+L+ R L F+ + +G Sbjct: 177 MPKAGFDKLNEMALKKGDKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVVQGAEL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + Y+ +++ G P+ +Q ++ + +YY ++ + R L Y+IDG+V KVD+ + Sbjct: 237 SNSHYQRFLQLKGWGLPMCPETKQLSSLEDVKAYYQDIMTRRDALAYEIDGVVIKVDDIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEP+ +GG ++N Sbjct: 297 AQVTLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L ++VGD V+++RAG+VIP++V ++++ R A+ F Sbjct: 357 ATLHNADEIARL-----------GVKVGDSVIIRRAGDVIPQIVAVVLDRRPETARDIVF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++GLG + Sbjct: 406 PDACPVCNSAVERVEGE------AVARCTGGLVCQAQRKEALKHFVSRKALDVDGLGVKV 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + PAD+F L S I + G S N+ ++NK ++ +L Sbjct: 460 IEQLVDRE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVSALNKAKDTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF++SLGIR VG A +LA+++ + + + L+ V +GDI+A Sbjct: 510 ARFLYSLGIREVGEATAMNLAQHFKTLELVQAATH----------EQLVEVSDIGDIVAS 559 Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 + F+ +N VE LL+ P+I + +E K +V TG+L K+ R +A+ Sbjct: 560 HLTSFFSQEKNRAVVEQLLELGVNWPTIEAVADDQELPLEGKVVVLTGSLSKLGRSEAKA 619 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTDI+ G+ GSKL KAQ LG++I EE + L+ Sbjct: 620 ALQALGAKVTGSVSKKTDILFAGEAAGSKLTKAQDLGIEIRTEEDLIALI 669 >gi|148269959|ref|YP_001244419.1| DNA ligase, NAD-dependent [Thermotoga petrophila RKU-1] gi|170288644|ref|YP_001738882.1| DNA ligase, NAD-dependent [Thermotoga sp. RQ2] gi|190359298|sp|A5IKX0|DNLJ_THEP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781442|sp|B1LA51|DNLJ_THESQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|147735503|gb|ABQ46843.1| DNA ligase, NAD-dependent [Thermotoga petrophila RKU-1] gi|170176147|gb|ACB09199.1| DNA ligase, NAD-dependent [Thermotoga sp. RQ2] Length = 688 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 247/721 (34%), Positives = 385/721 (53%), Gaps = 54/721 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M +R++ ++ +E+ L +EI YH+ YY + P+I D EYD L RR + Sbjct: 1 MSERKIP-------KEVIEEVERLREEIEYHNYRYYVLNDPVITDEEYDKLMRRLIELER 53 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 +P+L P+ P ++GG++ V HS+P LSL+ +N E++ +F R+ + Q+ Sbjct: 54 MYPELV---TPDSPTQRVGGKVLEGFKTVKHSVPMLSLDNTYNEEEILEFDRRVKKTLQE 110 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 + + E KIDG I +RYE GKFV A RGDG GEDVS ++ + +IP L Sbjct: 111 A---EVEYVAELKIDGVSIALRYENGKFVLGATRGDGIEGEDVSENVKTVRSIPLRLRKP 167 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 + +EVRGE+Y+ ++F LNDE G P+ANPRNAA+G LR+LN R L+ F Sbjct: 168 V--TVEVRGEIYMPVDEFKRLNDEREEEGLPPFANPRNAAAGTLRQLNTALVAARRLDSF 225 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 ++ + K Q+E LQ ++ LGF VN + ++ Y+ E + + L Y + Sbjct: 226 IYYVVHPENYGLKTQWEALQFLKELGFKVNPHSKLCKNIQEVIDYWREWEERKKELDYWV 285 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KV+ F Q+ LGE +++PRW I+ KF +QA TR+LD+ IQ+GRTG+LTPVA LE Sbjct: 286 DGVVVKVNRFDFQRILGETSKAPRWAIAFKFPAEQARTRVLDVTIQVGRTGVLTPVAELE 345 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G ++ A+LHN +YI+ +DIR+GD V V++AG +IP++V I Sbjct: 346 PVQLAGTIVKRASLHNFEYIR-----------EKDIRIGDYVFVEKAGGIIPQIVKSIPE 394 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R + P CP+C +V + + C + L+ VSR+ Sbjct: 395 LRTGSEKEIKPPDKCPVCGGKVGKLDPEEVALRCLNPHCPA------KLKRALRTLVSRE 448 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG++ +D A ++ ADIF L + G G ++ + Sbjct: 449 ALDIEGLGEKLIDRLVD----AGLVKDIADIFYLTPFDL-----AQLGPGIGQRTIAKIL 499 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 I + + L + I LGI VG + A+ LA+++ S + A + +L Sbjct: 500 QEIEEAKKRPLHKLITGLGIPMVGQKTAKILAEHFKSLEAIADA----------SYETLK 549 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 +P +G IA++IVE+++NP+ +E L K + + ++ TGTL+ Sbjct: 550 DIPGIGPEIAKSIVEYFRNPKTREIIEKLKKAGV-KLEERVMKLD-ILKGLTFAVTGTLK 607 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R + E+ +LGA V +SR TD +IVG+NPGSK EKA+ L VK M+EE+FL ++ Sbjct: 608 NFTREEIVEFFEKLGAKVVNSVSRNTDYLIVGENPGSKYEKAKMLKVKTMSEEEFLEFVR 667 Query: 720 Q 720 + Sbjct: 668 K 668 >gi|254480787|ref|ZP_05094034.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2148] gi|214039370|gb|EEB80030.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2148] Length = 677 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 239/715 (33%), Positives = 374/715 (52%), Gaps = 45/715 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + E+ L ++ + YY P + D+EYD R+ FP+L Sbjct: 1 MTDSATQAEVLQLRTQLREWNYRYYVLDDPSVPDAEYDRYLRQLQGFEEQFPELV---TE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G + +VTH +P LSL+ ++ +L F R+ + D +I ++ E Sbjct: 58 DSPTQRVGSKPLSQFSQVTHEVPMLSLDNAFDATELVDFERRLRDRLGEPDL-AIEYSCE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 PK+DG +++ Y G A RGDG +GED++ +R IP+IP L + P+I+EVRGE Sbjct: 117 PKLDGIAVSLLYRDGILERGATRGDGTTGEDITQNVRTIPSIPLQLRGDGYPQILEVRGE 176 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249 +Y+ F LN + G K + NPRNAA+G LR+L+ R L + +G Sbjct: 177 IYMPLAGFDQLNRRALEKGEKVFVNPRNAAAGSLRQLDSRITAQRPLEMCCYSVGLVQGG 236 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 +L + G +N + YY + R +LPYDIDG+VYKV+ Sbjct: 237 QLPPEHAAVLDCLHRWGLRINAESQVVTGVQACEQYYESLAKRRDSLPYDIDGIVYKVNR 296 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q +LG +R+PRW I+ KF ++ T+LLD++ Q+GRTG +TPVARLEPV +GG + Sbjct: 297 LDQQSRLGFVSRAPRWAIARKFPAQEEMTQLLDVEFQVGRTGAITPVARLEPVFVGGVTV 356 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I+ L +RVGD V+V+RAG+VIPKVV +++++R D++ Sbjct: 357 SNATLHNADEIERL-----------GLRVGDFVVVRRAGDVIPKVVSVVLDKRPGDSRAV 405 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FPS CP+C S R+ + A RC GGL C+AQQ +KHF SR A +I+GLG Sbjct: 406 EFPSHCPVCNSATEREPDE------AVIRCMGGLVCAAQQKAAIKHFASRRAMDIDGLG- 458 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 D + + A +++L + Q + + G+ S NL ++ ++ Sbjct: 459 ---DKLVEQMVDEGLLENVASLYSLHKDQLMA------LERMGEKSADNLLAALAASKDT 509 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SL RFIF+LGIR VG A +LA+++ S+ SL+ V VG ++ Sbjct: 510 SLPRFIFALGIREVGEATALNLARHFGSWPELVAASE----------ESLLDVDDVGPVV 559 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQ 667 A + +F+ + + EAL + S + + V TG L+ + R++A+ Sbjct: 560 ADHLRQFFDSTSGMAVAEALREAGVRWPDIEIAAESVLPLAGQTWVVTGKLELMGRNEAK 619 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + LGA V+ +S KT ++ G GSKL KAQ LGV++++E F+ LL+Q+ Sbjct: 620 AALQTLGAKVAGSVSAKTHCVVAGPGAGSKLAKAQDLGVEVIDEITFVALLEQHG 674 >gi|256617609|ref|ZP_05474455.1| NAD-dependent DNA ligase [Enterococcus faecalis ATCC 4200] gi|257089149|ref|ZP_05583510.1| NAD-dependent DNA ligase [Enterococcus faecalis CH188] gi|312904259|ref|ZP_07763421.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0635] gi|256597136|gb|EEU16312.1| NAD-dependent DNA ligase [Enterococcus faecalis ATCC 4200] gi|256997961|gb|EEU84481.1| NAD-dependent DNA ligase [Enterococcus faecalis CH188] gi|310632355|gb|EFQ15638.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0635] gi|315578805|gb|EFU90996.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0630] Length = 676 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 240/714 (33%), Positives = 383/714 (53%), Gaps = 53/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L++ A L ++++ + YY +P + D YD L + I FPDL P Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ K H IP SL ++ ED+ F R+ + K + + E Sbjct: 63 DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++RYE G FV A RGDG GE+++ +R + ++P L+ I +EVRGE Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ R LN F++ + + Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+EF+ Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G ++ Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CPIC S +V A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L + ++ AD++ L Q + + + S N+Y +I + S+ Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ IA Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLSTLSRAT----------AEEIVALDSIGETIAD 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++V +++N + L K V S ++K +V TG L + R + Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + L Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVSVWNEQEMVDALD 672 >gi|238063192|ref|ZP_04607901.1| DNA ligase, NAD-dependent [Micromonospora sp. ATCC 39149] gi|237885003|gb|EEP73831.1| DNA ligase, NAD-dependent [Micromonospora sp. ATCC 39149] Length = 702 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 231/717 (32%), Positives = 357/717 (49%), Gaps = 43/717 (5%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR+ ++L QE++ H YY P + D+E+D R +A+ FP L P+ P Sbjct: 16 EARERHATLSQELTEHQYRYYVLDAPTVSDAEFDRQLRELEALEAEFPAL---RTPDSPT 72 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +IGG + VTH+ LSL+ + E+L + R+ R + + E K+D Sbjct: 73 QRIGGTFSTDFTPVTHAERMLSLDNAFADEELAAWAERVER----DAGGPVPYLCELKVD 128 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT-----IPRVLSLNIPEIIEVRGE 190 G I + YEKG+ V AA RGDG +GEDV+A +R+I P ++PE +EVRGE Sbjct: 129 GLAINLTYEKGRLVRAATRGDGRTGEDVTANVRSIRDVPARLTPSDEFPDVPEFVEVRGE 188 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 +Y F LN ++ G+ P+ANPRNAA+G LR+ +P +R L VHG+G Sbjct: 189 IYFPIAGFADLNASLVEQGKAPFANPRNAAAGSLRQKDPRITASRPLRLVVHGIGARRGY 248 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q E +R G P ++ R G+ + R + ++IDG+V KVD Sbjct: 249 TPTAQSESYAALRAWGLPTSDRWRVVPDLAGVAEFIAYYAEHRHDVEHEIDGVVVKVDPV 308 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 S+Q +LG +R+PRW I+ K+ ++ +T+LLDID+ +GRTG +TP A LEPV + G+ + Sbjct: 309 SIQGRLGSTSRAPRWAIAFKYPPEEVNTKLLDIDVNVGRTGRVTPFAILEPVLVAGSTVA 368 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN ++ + + +GD V++++AG+VIP+V+ +V+ R DA+PF Sbjct: 369 LATLHNAHEVER-----------KGVLIGDTVVIRKAGDVIPEVLGPVVDLRPADARPFV 417 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + + + + RC +C AQ ER+ H R AF+IE LG + Sbjct: 418 MPTTCPACGTPLRPE-----KEADVDIRCPNSRSCPAQLRERVFHLAGRGAFDIEVLGYK 472 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ I D+F+L + + N G + L D++ R Sbjct: 473 GAAALLDAQ----VITDEGDLFSLDAERLAQSPFFVNKDGSLGSNAAKLLDNLAVARERD 528 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R + L IRHVG A++LA+++ S + L V VG IA Sbjct: 529 LWRVLVGLSIRHVGPTAAQALARHFRSMAAIQEASE----------EELSSVDGVGPTIA 578 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +IV+++ + V + +E +V TGTL R +A E Sbjct: 579 ASIVDWFTVDWHREVVRKWAEAGVRMAEEAGDEGPRPLEGLTVVVTGTLSGFSRDQAAEA 638 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 + G V+ +S+KT ++VGDNPGSK +KA L V +++EE F LL Q R Sbjct: 639 IQTRGGKVTGSVSKKTGFVVVGDNPGSKADKAATLKVPVLDEEGFRVLLDQGPDAAR 695 >gi|229548668|ref|ZP_04437393.1| DNA ligase, NAD-dependent [Enterococcus faecalis ATCC 29200] gi|257420983|ref|ZP_05597973.1| DNA ligase [Enterococcus faecalis X98] gi|312953107|ref|ZP_07771956.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0102] gi|229306184|gb|EEN72180.1| DNA ligase, NAD-dependent [Enterococcus faecalis ATCC 29200] gi|257162807|gb|EEU92767.1| DNA ligase [Enterococcus faecalis X98] gi|310628941|gb|EFQ12224.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0102] gi|315153982|gb|EFT97998.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0031] gi|315156746|gb|EFU00763.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0043] Length = 676 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 240/714 (33%), Positives = 382/714 (53%), Gaps = 53/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L++ A L ++++ + YY +P + D YD L + I FPDL P Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ K H IP SL ++ ED+ F R+ + K + + E Sbjct: 63 DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++RYE G FV A RGDG GE+++ +R + ++P L+ I +EVRGE Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ R LN F++ + + Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+EF+ Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G ++ Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CPIC S +V A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L + ++ AD++ L Q + + + S N+Y +I + S+ Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ IA Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRAT----------AEEIVALDSIGETIAN 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++V +++N + L K V S ++K +V TG L + R + Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE+ + L Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQAMVDALD 672 >gi|254460861|ref|ZP_05074277.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium HTCC2083] gi|206677450|gb|EDZ41937.1| DNA ligase, NAD-dependent [Rhodobacteraceae bacterium HTCC2083] Length = 706 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 298/715 (41%), Positives = 443/715 (61%), Gaps = 14/715 (1%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I LS+E+AR EL++L + ++ + Y+ P + D+ YDALK+R AI FP L Sbjct: 4 TDITELSVEEARAELAALSKALNTANVAYHGKDNPDLSDANYDALKQRNAAIEDHFPTLV 63 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R + P +G + K+TH+ +SL + ED+ F I ++ +D + Sbjct: 64 RE---DSPSKLVGAPVQDGFGKITHAQRMMSLGNAFTDEDVADFTQGIRKYLGLSNDRPL 120 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 FT EPKIDG +++RYE G + AA RGDG +GEDV A I +P+ L N PE+IE Sbjct: 121 AFTAEPKIDGLSLSLRYENGTLIQAATRGDGTTGEDVLANALTIADVPKNL-ENAPEVIE 179 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY++ DF ALN + G K +ANPRNAA+G LR+L+ +R L FF + G Sbjct: 180 VRGEVYMTHADFDALNARQVERGSKTFANPRNAAAGSLRQLDSEITKSRPLRFFAYAWGV 239 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S+ A Q+ + +++ LGF N ++ ++ +Y +++ R+ L YDIDG+VYK Sbjct: 240 LSDPLANTQHGAIARLKMLGFQTNPLTQRFENVVDLIKHYQQIEQQRAALGYDIDGVVYK 299 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ + Q +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV +GG Sbjct: 300 VDDLAYQSRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLSPVTVGG 359 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHNEDYI+G D SG+++RGGRDIRVGD V + RAG+VIPK+ D+ +++R D+ Sbjct: 360 VVVSNATLHNEDYIEGRDNSGELIRGGRDIRVGDWVQIYRAGDVIPKIKDVDLSKRPSDS 419 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 PF FP CP CQS +RD+ A RC+GGL C AQ +E++KHFVSR AF+IEG Sbjct: 420 SPFEFPKICPECQSAALRDVG------DAVRRCSGGLICPAQAVEKMKHFVSRGAFDIEG 473 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG +Q++ F+ DP IR PADIFTL+ R +K++N G+G S L+ +I++R Sbjct: 474 LGAKQVEMFYH--DPTLPIREPADIFTLKTRDAQQLSKLKNRDGWGAKSADKLFAAIDER 531 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 RNIS R +++LG+RHVGA+ A +A++Y S+ F ++ D W L+ + VG Sbjct: 532 RNISFARVLYALGLRHVGAQSASLIARHYGSWAVFVDAMDAASDQVGDAWDRLMSIDGVG 591 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +I+A ++V + P ++ + E++ + S + K +VF+GTL+K+ R + Sbjct: 592 EIMASSLVTAFIQPGERASITRVTDELTIIDAEKP-DTDSPVTGKVVVFSGTLEKMTRAE 650 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ LGA VS +S KTDI+I G GSK +KA +L ++ ++E+ +L L++ Sbjct: 651 AKARAEALGAKVSGSVSAKTDILIAGPGAGSKAKKAAELDIETLDEDSWLALIED 705 >gi|260555699|ref|ZP_05827919.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ATCC 19606] gi|260410610|gb|EEX03908.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ATCC 19606] Length = 691 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 254/720 (35%), Positives = 380/720 (52%), Gaps = 47/720 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I +++ L Q I+ H+ YY +P I DSEYD L + A+ +P+L ++ Sbjct: 14 MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQA--- 70 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+GG+ VTH +P LSL ++N EDL F R+ + + + +E Sbjct: 71 DSPTMKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERL---PNQKVQYEVE 127 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188 K+DG I+I YE G V RGDG +GED++ ++ I +P+VL EI +EVR Sbjct: 128 LKLDGLAISIWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 187 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247 GEV + K+ F LN + A G K +ANPRNAA+G LR+L+P F+ +G+ + Sbjct: 188 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 247 Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ LQ + LGF + N+ + Y +++ R L +IDG+V KV Sbjct: 248 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 307 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q+QLG +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG Sbjct: 308 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 367 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++N TLHN I L D+R+GD V V R G+VIPKV + R +A+ Sbjct: 368 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 416 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C S VV A RC+GGL C+AQ++E ++HFVSR A +IEGL Sbjct: 417 VVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 470 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ + ++ ADI+ L ++ + I G+ SV NL D+I + Sbjct: 471 GDRWVESLLR----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASK 522 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI++LGIR VG AR LA + + + + +L + P VGD Sbjct: 523 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA----------NVEALKKTPDVGD 572 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I A+ I +F+ P NI ++ L+ + + V TGTL+++ R +A Sbjct: 573 ITAEWIADFFLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 631 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 + + LGA VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y TL Sbjct: 632 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTLS 691 >gi|307289585|ref|ZP_07569529.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0109] gi|306499399|gb|EFM68772.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0109] gi|315164584|gb|EFU08601.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1302] Length = 676 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 240/714 (33%), Positives = 384/714 (53%), Gaps = 53/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L++ A L ++++ + YY +P + D YD L + I FPDL P Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ K H IP SL ++ ED+ F R+++ K + + E Sbjct: 63 DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVHKAIGK----PVAYCCE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++RYE G FV A RGDG GE+++ +R + ++P L+ I +EVRGE Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ R LN F++ + + Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+EF+ Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G ++ Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CPIC S +V A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L + ++ AD++ L Q + + + S N+Y +I + S+ Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ IA Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLSTLSRAT----------AEEIVALDSIGETIAD 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++V +++N + L K V S ++K +V TG L + R + Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + L Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672 >gi|254781232|sp|B0VU02|DNLJ_ACIBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 678 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 252/720 (35%), Positives = 379/720 (52%), Gaps = 47/720 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I +++ L Q I+ H+ YY +P I DSEYD L + A+ +P+ ++ Sbjct: 1 MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEFVQA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+GG+ VTH +P LSL ++N EDL F R+ + + + +E Sbjct: 58 DSPTTKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERL---PNQKVQYEVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188 K+DG I++ YE G V RGDG +GED++ ++ I +P+VL EI +EVR Sbjct: 115 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 174 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247 GEV + K+ F LN + A G K +ANPRNAA+G LR+L+P F+ +G+ + Sbjct: 175 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 234 Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ LQ + LGF + N+ + Y +++ R L +IDG+V KV Sbjct: 235 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 294 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q+QLG +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 354 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++N TLHN I L D+R+GD V V R G+VIPKV + R +A+ Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 403 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C S VV A RC+GGL C+AQ++E ++HFVSR A +IEGL Sbjct: 404 VVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ + ++ ADI+ L ++ + I G+ SV NL D+I + Sbjct: 458 GDRWVESLLR----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASK 509 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI++LGIR VG AR LA + + + + +L + P VGD Sbjct: 510 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA----------NVEALKKTPDVGD 559 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I A+ I +F+ P NI ++ L+ + + V TGTL+++ R +A Sbjct: 560 ITAEWIADFFLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 + + LGA VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y TL Sbjct: 619 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTLS 678 >gi|169634132|ref|YP_001707868.1| DNA ligase [Acinetobacter baumannii SDF] gi|169152924|emb|CAP01965.1| DNA ligase [Acinetobacter baumannii] Length = 691 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 252/720 (35%), Positives = 379/720 (52%), Gaps = 47/720 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I +++ L Q I+ H+ YY +P I DSEYD L + A+ +P+ ++ Sbjct: 14 MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEFVQA--- 70 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+GG+ VTH +P LSL ++N EDL F R+ + + + +E Sbjct: 71 DSPTTKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERL---PNQKVQYEVE 127 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188 K+DG I++ YE G V RGDG +GED++ ++ I +P+VL EI +EVR Sbjct: 128 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 187 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247 GEV + K+ F LN + A G K +ANPRNAA+G LR+L+P F+ +G+ + Sbjct: 188 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 247 Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ LQ + LGF + N+ + Y +++ R L +IDG+V KV Sbjct: 248 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 307 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q+QLG +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG Sbjct: 308 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 367 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++N TLHN I L D+R+GD V V R G+VIPKV + R +A+ Sbjct: 368 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 416 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C S VV A RC+GGL C+AQ++E ++HFVSR A +IEGL Sbjct: 417 VVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 470 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ + ++ ADI+ L ++ + I G+ SV NL D+I + Sbjct: 471 GDRWVESLLR----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASK 522 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI++LGIR VG AR LA + + + + +L + P VGD Sbjct: 523 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA----------NVEALKKTPDVGD 572 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I A+ I +F+ P NI ++ L+ + + V TGTL+++ R +A Sbjct: 573 ITAEWIADFFLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 631 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 + + LGA VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y TL Sbjct: 632 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTLS 691 >gi|86148411|ref|ZP_01066703.1| DNA ligase [Vibrio sp. MED222] gi|85833825|gb|EAQ51991.1| DNA ligase [Vibrio sp. MED222] Length = 670 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 248/710 (34%), Positives = 383/710 (53%), Gaps = 47/710 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 E + L L + + YH YY P I D EYD L ++ + P+L + Sbjct: 2 KESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKLEEENPELVTV---DS 58 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG+ +VTH IP LSL+ ++ +DL F R+ + F EPK Sbjct: 59 PSQRVGGQPLDGFTQVTHEIPMLSLDNAFSDDDLDAFNKRMSDRAPTANLK--TFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG +++ Y KG V AA RGDG +GE+++ +R I +IP L PE IEVRGEV+ Sbjct: 117 LDGLAVSLLYVKGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE-IF 250 + K F LN+ + G K + NPRNAA+G LR+L+ R L F+ + +G Sbjct: 177 MPKAGFDKLNEMALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVVQGAEL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + Y+ +++ G P+ +Q ++ + +YY ++ + R TL Y+IDG+V KVD+ + Sbjct: 237 SNSHYQRFLQLKAWGLPMCPETKQLSSLEDVKAYYQDIMTRRDTLAYEIDGVVIKVDDIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+ LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEP+ +GG ++N Sbjct: 297 AQETLGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L ++VGD V+++RAG+VIP++V ++ + R A+ F Sbjct: 357 ATLHNADEIARL-----------GVKVGDSVIIRRAGDVIPQIVAVVQDRRPETAKDIVF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++GLG + Sbjct: 406 PDACPVCNSAVERVEGE------AVARCTGGLVCQAQRKEALKHFVSRKALDVDGLGVKV 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + PAD+F L S I + G S N+ ++NK ++ +L Sbjct: 460 IEQLVDRE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVSALNKAKDTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF++SLGIR VG A +LA+++ + + + L+ V +GDI+A Sbjct: 510 ARFLYSLGIREVGEATAMNLAQHFKTLELVQAATH----------EQLVEVSDIGDIVAS 559 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQE 668 + F+ +N V+ L++ +E K +V TG+L K+ R +A+ Sbjct: 560 HLTSFFSQEKNRAVVDQLIELGVNWPAIEAVADDQELPLEGKVVVLTGSLSKLGRSEAKA 619 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTDI+ G+ GSKL KAQ LG++I EE + L+ Sbjct: 620 ALQALGAKVTGSVSKKTDILFAGEAAGSKLTKAQDLGIEIRTEEDLIALI 669 >gi|217970592|ref|YP_002355826.1| DNA ligase, NAD-dependent [Thauera sp. MZ1T] gi|217507919|gb|ACK54930.1| DNA ligase, NAD-dependent [Thauera sp. MZ1T] Length = 693 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 263/703 (37%), Positives = 380/703 (54%), Gaps = 49/703 (6%) Query: 31 HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90 HD YY P I D+EYD L R AI A+P L + P ++GG+ V Sbjct: 30 HDHAYYVLDAPTIPDAEYDRLFRELQAIERAYPAL---RSADSPTQRVGGKALAQFATVR 86 Query: 91 HSIPTLSLEKIWNIED--LRKFITRIYRFWQK-KDDNSIFFTLEPKIDGTMITIRYEKGK 147 H +P LS+ + E F R+ R +DD ++ + E K DG I++RYE G Sbjct: 87 HRVPMLSISTETDTEASGAFAFDARVRRALGLDEDDAAVAYAAELKFDGLAISLRYEDGV 146 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG +GEDV++ +R + IP L P ++EVRGE+Y+ ++DF LN Sbjct: 147 LVQAATRGDGETGEDVTSNVRTVKAIPLRLLGEAPPVLEVRGEIYLRRDDFERLNARQAE 206 Query: 208 VGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKT-SEIFAKGQYEMLQKMRCLG 265 G K + NPRNAA+G +R+L+P R +F+ +GLG+ Q E+L + G Sbjct: 207 AGEKIFVNPRNAAAGSIRQLDPGIAARRPLSFYAYGLGEVAGWTLPATQTEVLDALAAFG 266 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 PV Q G+ +++ + ++R TLP+DIDG+VYKVD +LQ+QLG R PRW Sbjct: 267 LPVCGHRAQVRGAEGLAAFHARIGALRDTLPFDIDGVVYKVDALALQQQLGFVTREPRWA 326 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++HK+ ++A T L DI++Q+GRTG LTPVARLEPV +GG +TNATLHN+D I Sbjct: 327 VAHKYPAQEAVTLLRDIEVQVGRTGALTPVARLEPVFVGGVTVTNATLHNQDEIDR---- 382 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS---FPSFCPICQSRVV 442 +D+R+GD V+V+RAG+VIP+VV I+ R + F CP+C S VV Sbjct: 383 -------KDVRIGDWVIVRRAGDVIPEVVAPILERRGGELPRFVLLDRFPTCPVCGSHVV 435 Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502 R + A RCTGGL C AQ+ + L HF R A +IEGLG + +D A Sbjct: 436 RGEDE------AVARCTGGLFCPAQRKQALLHFAGRRAMDIEGLGDKLVDQLVD----AA 485 Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 ++ P D++ L + N+ G+ S NL +I K R +L RFIF+LGIR+V Sbjct: 486 IVKTPVDLYRL------GVLALANLERMGEKSAQNLLMAIEKSRGTTLARFIFALGIRNV 539 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 G AR LA+++ D +L +VP VG I+A+ I EF+ P N Sbjct: 540 GEATARDLARHFGKLDALIAA----------DVDALQQVPDVGPIVAKCIAEFFAEPHNR 589 Query: 623 CAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 +E L + G + +V+ + K V TGTL + R +A+ + G V+ + Sbjct: 590 EVIEQLRAAGVHWAEGEPQGSVAGALAGKTFVLTGTLPTLSRDEAKARIEARGGKVAGSV 649 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 S+KT ++ G GSKL+KAQ LG+ I++E+ LL + +T Sbjct: 650 SKKTHYVVAGAEAGSKLDKAQALGLAILDEDGLRVLLNETDTN 692 >gi|281412160|ref|YP_003346239.1| DNA ligase, NAD-dependent [Thermotoga naphthophila RKU-10] gi|281373263|gb|ADA66825.1| DNA ligase, NAD-dependent [Thermotoga naphthophila RKU-10] Length = 688 Score = 550 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 248/721 (34%), Positives = 385/721 (53%), Gaps = 54/721 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M +R++ ++ +E+ L +EI YH+ YY + P+I D EYD L RR + Sbjct: 1 MSERKIP-------KEVIEEVERLREEIEYHNYRYYVLNDPVITDEEYDKLMRRLIELER 53 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 +P+L P+ P ++GG++ V HS+P LSL+ +N E++ +F R+ + Q+ Sbjct: 54 MYPELV---TPDSPTQRVGGKVLEGFKTVKHSVPMLSLDNTYNEEEILEFDRRVKKTLQE 110 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 + + E KIDG I +RYE GKFV A RGDG GEDVS ++ + +IP L Sbjct: 111 A---EVEYVAELKIDGVSIALRYENGKFVLGATRGDGIEGEDVSENVKTVRSIPLRLRKL 167 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 + +EVRGE+Y+ ++F LNDE G P+ANPRNAA+G LR+LN R L+ F Sbjct: 168 V--TVEVRGEIYMPVDEFKRLNDEREEEGLPPFANPRNAAAGTLRQLNTALVAARRLDSF 225 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 ++ + K Q+E LQ ++ LGF VN + ++ Y+ E K + L Y + Sbjct: 226 IYYVVHPENYGLKTQWEALQFLKELGFKVNPHSKLCKNIQEVIDYWREWKERKKELDYWV 285 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KV+ F Q+ LGE +++PRW I+ KF +QA TR+LD+ IQ+GRTG+LTPVA LE Sbjct: 286 DGVVVKVNRFDFQRILGETSKAPRWAIAFKFPAEQARTRVLDVTIQVGRTGVLTPVAELE 345 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G ++ A+LHN +YI+ +DIR+GD V V++AG +IP++V I Sbjct: 346 PVQLAGTIVKRASLHNFEYIR-----------EKDIRIGDYVFVEKAGGIIPQIVKSIPE 394 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R + P CP+C +V + + C + L+ VSR+ Sbjct: 395 LRTGSEKEIKPPDKCPVCGGKVGKLDPEEVALRCLNPHCPA------KLKRALRTLVSRE 448 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG++ +D A ++ ADIF L + G G ++ + Sbjct: 449 ALDIEGLGEKLIDRLVD----AGLVKDIADIFYLTPFDL-----AQLGPGIGQRTIAKIL 499 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 I + + L + I LGI VG + A+ LA+++ S + A + +L Sbjct: 500 QEIEEAKKRPLHKLITGLGIPMVGQKTAKILAEHFKSLEAIADA----------SYETLK 549 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 +P +G IA++IVE+++NP+ +E L K + + ++ TGTL+ Sbjct: 550 DIPGIGPEIAKSIVEYFRNPKTREIIEKLKKAGV-KLEERVMKLD-ILKGLTFAVTGTLK 607 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R + E+ +LGA V +SR TD +IVG+NPGSK EKA+ L VK M+EE+FL ++ Sbjct: 608 NFTREEIVEFFEKLGAKVVNSVSRNTDYLIVGENPGSKYEKAKMLKVKTMSEEEFLEFVR 667 Query: 720 Q 720 + Sbjct: 668 K 668 >gi|254514186|ref|ZP_05126247.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR5-3] gi|219676429|gb|EED32794.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR5-3] Length = 675 Score = 550 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 242/712 (33%), Positives = 376/712 (52%), Gaps = 46/712 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + +L +++ + YY +P + D +YDA R + P+L +DP+ P Sbjct: 6 DIKARVVALREQLERWNHQYYVLDEPTVPDQDYDAALRELQKLETEHPEL---QDPSSPT 62 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G + V H +P LSL+ ++ E+L F+ R+ + + EPK+D Sbjct: 63 QRVGAAPLSAFESVAHPMPMLSLDNAFSDEELGAFLQRVMDRLDVESLPEL--VAEPKLD 120 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYIS 194 G +++ Y G AA RGDG GED++ +R I ++P L + P+++E+RGE+++ Sbjct: 121 GIAVSLIYRDGVLARAATRGDGTHGEDITLNVRTIGSVPLRLGGDACPDVVEIRGEIFMP 180 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLG-KTSEIFAK 252 + F A N+ G KP+ NPRNAA+G LR+L+ R L F + G + K Sbjct: 181 RAGFEAFNEYARRNGEKPFVNPRNAAAGSLRQLDSQITARRPLEFCAYASGQHPESQWPK 240 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 +E+LQ G P++ + ++ V YY + R +L +DIDG+VYKV++F Q Sbjct: 241 SHWEVLQLFASWGVPISRYAERLSSLEECVDYYQRLGDQRDSLSFDIDGIVYKVNDFEAQ 300 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG AR+PRW I+ KF ++A T++ ++ Q+GRTG +TPVARLEPV +GG ++NAT Sbjct: 301 SKLGFVARAPRWSIARKFPAQEAVTKVTGVEFQVGRTGAITPVARLEPVFVGGVTVSNAT 360 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D + L+ + GD V+V+RAG+VIP+VV +I R PDA + PS Sbjct: 361 LHNMDEVGRLE-----------LHDGDTVVVRRAGDVIPQVVSVIEERRLPDAALIAAPS 409 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S V R A RC+GGL C AQ ++HF SR A +I+GLG++ Sbjct: 410 ACPVCASAVQRVAGE------ATLRCSGGLVCPAQLKAAVRHFASRRAMDIDGLGEK--- 460 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + +R AD+F L++R + + G+ S T L +I R +L R Sbjct: 461 -LVEQMVDTGLVRDVADLFRLEQR------SLLTLERMGEKSATKLLAAIESSRRTTLAR 513 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LGIR VG A +LA Y+ S + D SL+ VP VG ++AQ + Sbjct: 514 FIFALGIREVGEATALALATYFGSIEAIRAA----------DLDSLLEVPDVGPVVAQHL 563 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ N +E LL +N +E + V +G L+ R +A+E + Sbjct: 564 RAFFSAQANQQVLERLLAAGVVWPAVSPAQNAQGPLEGQTWVVSGKLESQSRDEAEEALR 623 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 LGA S +S KT +++ G GSKL KA+ LGV+I++E++FL L + Sbjct: 624 ALGARTSKSVSGKTSVLLAGPGAGSKLAKAESLGVEIVDEQEFLARLAKAGA 675 >gi|229546559|ref|ZP_04435284.1| NAD-dependent DNA ligase [Enterococcus faecalis TX1322] gi|256854411|ref|ZP_05559775.1| DNA ligase [Enterococcus faecalis T8] gi|307274689|ref|ZP_07555861.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2134] gi|307296388|ref|ZP_07576212.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0411] gi|229308304|gb|EEN74291.1| NAD-dependent DNA ligase [Enterococcus faecalis TX1322] gi|256709971|gb|EEU25015.1| DNA ligase [Enterococcus faecalis T8] gi|306496043|gb|EFM65628.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0411] gi|306508618|gb|EFM77716.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2134] gi|315029103|gb|EFT41035.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4000] gi|315157732|gb|EFU01749.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0312] gi|323479918|gb|ADX79357.1| DNA ligase, NAD-dependent [Enterococcus faecalis 62] Length = 676 Score = 550 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 240/714 (33%), Positives = 382/714 (53%), Gaps = 53/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L++ A L ++++ + YY +P + D YD L + I FPDL P Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ K H IP SL ++ ED+ F R+ + K + + E Sbjct: 63 DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++RYE G FV A RGDG GE+++ +R + ++P L+ I +EVRGE Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ R LN F++ + + Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+EF Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFV 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G ++ Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CPIC S +V A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L + ++ AD++ L Q + + + S N+Y +I + S+ Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ IA Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRAT----------AEEIVALDSIGETIAD 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++V +++N + L K V S ++K +V TG L + R + Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + L Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVSVWNEQEMVDALD 672 >gi|260576789|ref|ZP_05844774.1| DNA ligase, NAD-dependent [Rhodobacter sp. SW2] gi|259021041|gb|EEW24352.1| DNA ligase, NAD-dependent [Rhodobacter sp. SW2] Length = 705 Score = 550 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 302/713 (42%), Positives = 431/713 (60%), Gaps = 18/713 (2%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 IE L+ +A E L + ++ + Y+Q P + D+ YDA+KRR AI FP LA Sbjct: 6 AIEQLTEAEAAVEWQELARAVAQANIDYHQNDAPKLTDATYDAMKRRLAAIEVLFPQLAT 65 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + P +K+G KV H++ LSLE ++ D+ F R+ +F + Sbjct: 66 ----DSPTSKVGAAPADGFAKVPHAVRMLSLENAFDDTDVTDFDDRVRKFLGHAA--PLT 119 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 +T EPKIDG +++RYE G V AA RGDG GE+V+ R I IP+ L+ P ++EV Sbjct: 120 YTAEPKIDGLSLSLRYEAGVLVQAATRGDGEVGENVTDNARTISDIPQSLTGA-PAVLEV 178 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY+S DF ALN A G K +ANPRNAA+G LR+L+ + R L FF + G Sbjct: 179 RGEVYMSHADFAALNSRQAARGEKTFANPRNAAAGSLRQLDASITAARPLRFFAYAWGAL 238 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE A Q E + ++ LGF N R + +++ Y E+++ R++L YDIDG+VYKV Sbjct: 239 SEPLAATQLEAIARLAALGFATNPLTRACTSPDDLLAVYREIEAQRASLGYDIDGVVYKV 298 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ +LQ +LG RA +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV +GG Sbjct: 299 NDLALQARLGFRAATPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGGV 358 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ NATLHNEDYI G D+ G +R G+DIR+GD V V RAG+VIPK+ +I + +R + Sbjct: 359 VVANATLHNEDYIAGRDSKGNPIRDGKDIRIGDWVQVYRAGDVIPKINNIDLEKRPKTVE 418 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F+FP+ CP C S +R+ + RCTGGL C AQ +ERLKHFVSR AF+IEGL Sbjct: 419 TFTFPTICPQCGSDAIREDG------DSVRRCTGGLICPAQAVERLKHFVSRAAFDIEGL 472 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGDVSVTNLYDSINKR 545 G +Q++ FF DP ++ PADIFTL R S K++N G+G+ S TNL+ +I+++ Sbjct: 473 GAKQIEAFFN--DPDLPLKTPADIFTLASRDAASPLKKLKNRDGWGEKSATNLFAAIDEK 530 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R+I L R IF+LGIRHVG A LA +Y S+ NF + + DW L + VG Sbjct: 531 RSIPLHRLIFALGIRHVGESSAALLANHYGSWSNFEAAMTHAEIGQGADWADLTAIDGVG 590 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++A +++ + P A++AL+ ++ S + K LVFTGTL+K+ R + Sbjct: 591 AVLATSLITTFHQPAERAAIDALVAHLTVQDAA-PVATDSPVAGKTLVFTGTLEKMSRAE 649 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ LGA V+ +S KTD++I G GSK + A+ LGV++++E +L L+ Sbjct: 650 AKARAESLGAKVAGSVSAKTDLVIAGPGAGSKAKAAEALGVQVIDEAAWLALI 702 >gi|257784913|ref|YP_003180130.1| DNA ligase, NAD-dependent [Atopobium parvulum DSM 20469] gi|257473420|gb|ACV51539.1| DNA ligase, NAD-dependent [Atopobium parvulum DSM 20469] Length = 705 Score = 550 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 229/735 (31%), Positives = 364/735 (49%), Gaps = 60/735 (8%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + ALS ++ + L + +++ YY P + D+E+D L + A+P+L Sbjct: 1 MAALSPKE-TARAAELNRILNHAAYAYYALDNPELTDAEFDRLLIELQQLEAAYPELI-- 57 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + ++GG ++ V H+ S++ N+E+L +++R N + + Sbjct: 58 -TEDSYTQRVGGYVSEQFEPVQHAARMYSMDDAMNLEELDAWLSRTDEALGASPTNPVAY 116 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---- 184 T E KIDG + + Y G+FV AA RGDG +GE+V+A + I +PR L+L E Sbjct: 117 TCELKIDGLGVALTYRDGQFVRAATRGDGSTGENVTANVLTISDVPRELALAGLERVENR 176 Query: 185 -----IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238 IEVRGEVY+ K+ F+ LN++ A G++P+ANPRNAA+G LR+ +P R L Sbjct: 177 GLNQSIEVRGEVYMPKHSFIRLNEDADAAGKQPFANPRNAAAGSLRQKDPKITAHRDLET 236 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 F++ + + Q+E L +R GF VN R+ + + + R L YD Sbjct: 237 FIYAVADEGPLDVHSQWEFLNWLRSCGFNVNPHARRCLNAQEVHDFCAQALEQRGDLNYD 296 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+V KVD F+ Q+ LG +R+PRW I+ KF ++ T L +I IQ+GRTG+LTPVA Sbjct: 297 IDGVVVKVDSFASQEALGFTSRAPRWAIAFKFPPEEKQTVLREIRIQVGRTGVLTPVAEF 356 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 +PV + G+ I ATLHN D I+ +++R GD ++V +AG+VIP+VV ++ Sbjct: 357 DPVTVAGSTIARATLHNLDEIRR-----------KNVREGDTIIVHKAGDVIPEVVGPVL 405 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 N R DA F P+ CP C S V+++ A RC + C AQ +ERL H+ SR Sbjct: 406 NLRPADAVEFQMPATCPSCGSPVIQEEGE------VAFRCVS-IDCPAQAVERLIHWGSR 458 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV--- 535 A +I+GLG D + AD + + + + Sbjct: 459 KAMDIDGLG----DELINRMVEEGVLSDVADFYDKLTEEMLACMPTGRVYDTDTADHLSG 514 Query: 536 ----------TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 + + + + L R +F +G+RHVGA +A LA+ + S Q A Sbjct: 515 DSIPVGHTIAKKVMAKVEESKTRGLGRVLFGIGMRHVGANVAELLAQEFGSIQALATAP- 573 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-S 644 + +P +G IA+++ EF+ P N+ +E L + +N Sbjct: 574 ---------VEKIAEIPGIGPKIAESVHEFFSIPENVAVIERLRQAGVVLEEEKTENELP 624 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 + V TGTL+ R +A + +GA VS +S+KT ++ G+ GSKL KA+ L Sbjct: 625 QTLAGLTFVLTGTLEHFTRDEAGAQLKAMGAKVSGSVSKKTSFVVAGEAAGSKLTKAESL 684 Query: 705 GVKIMNEEQFLFLLQ 719 GV +++E +L+ Sbjct: 685 GVPVLDETALQQILE 699 >gi|330466191|ref|YP_004403934.1| DNA ligase [Verrucosispora maris AB-18-032] gi|328809162|gb|AEB43334.1| DNA ligase, NAD-dependent [Verrucosispora maris AB-18-032] Length = 717 Score = 550 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 228/710 (32%), Positives = 354/710 (49%), Gaps = 43/710 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 QAR+ ++L QE++ H YY P + D+E+D R A+ FP L P+ P Sbjct: 31 QARERHATLSQELTEHQYRYYVLDAPTVSDAEFDRQLRELTALEEEFPAL---RTPDSPT 87 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + V H+ +SL+ + E+L + R+ R + + E K+D Sbjct: 88 QRVGGTFSTDFTPVAHAERMMSLDNAFADEELAAWAERVER----DAGGPVPYLCELKVD 143 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-----LSLNIPEIIEVRGE 190 G I + Y+ G+ + AA RGDG +GEDV+A +R+I +P +PE IEVRGE Sbjct: 144 GLAINLTYQGGRLIRAATRGDGRTGEDVTANVRSIRDVPSRLTDSAEYGPVPEFIEVRGE 203 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 +Y F LN ++ G+ P+ANPRNAA+G LR+ +P +R L VHG+G Sbjct: 204 IYFPVEAFADLNAGLVEQGKAPFANPRNAAAGSLRQKDPRITASRPLRLVVHGIGARKGF 263 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q E ++ G P ++ R G+ Y + R + ++IDG+V KVD Sbjct: 264 QPSTQSESYSALKAWGLPTSDRWRVLPDLTGVRDYIAHYAAHRHDVEHEIDGVVVKVDPV 323 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +Q +LG +R+PRW I+ K+ ++ +T+LLDI++++GRTG +TP A LEPV + G+ + Sbjct: 324 PIQGRLGSTSRAPRWAIAFKYPPEEVNTKLLDIEVEVGRTGRVTPRALLEPVKVAGSTVA 383 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN ++ + + +GD V++++AG+VIP+V+ +V+ R PDA+PF Sbjct: 384 YATLHNAREVER-----------KGVLIGDTVVIRKAGDVIPEVLGPVVDLRPPDARPFV 432 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + + + RC +C AQ ER+ H R AF+IE LG + Sbjct: 433 MPTTCPACGTPLA-----PAKEGDVDIRCPNSRSCPAQLRERVFHLAGRGAFDIEALGYK 487 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ I D+F+L Q + N G + T L D++ R Sbjct: 488 SGAALLDAQ----IITDEGDLFSLDAEQLARSPFFVNKDGSLGSNATKLLDNLAVARERD 543 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R + +L IRHVG A++LA+++ S + L V VG IA Sbjct: 544 LWRVLVALSIRHVGPTAAQALARHFRSIEAIDNASE----------EELSSVDGVGPTIA 593 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +I E++ + V + +E +V TGTL R +A E Sbjct: 594 ASIREWFAVDWHREVVRKWAEAGVRMAEEAVAEGPRPLEGLTVVVTGTLSGYSRDQAAEA 653 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + G VS +S+KT ++VGDNPGSK +KA L V I++EE F LL Sbjct: 654 IQSRGGKVSGSVSKKTGFVVVGDNPGSKADKAATLKVPILDEEGFQVLLD 703 >gi|159028322|emb|CAO87220.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 669 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 220/706 (31%), Positives = 361/706 (51%), Gaps = 45/706 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++ L+ E+ YY P I DS YD L R + I +P L P+ P Sbjct: 6 EIQQRCQQLKTELQRASYAYYVLDDPFISDSVYDQLYRELEDIEKRYPQLI---TPDSPT 62 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G +++ V H+IP SLE +N+E+L K+ +R R+ + D + E KID Sbjct: 63 QRVGDKISSQFVSVRHNIPLYSLENAFNLEELNKWGSRWQRYVNETQD--TEYVCELKID 120 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYIS 194 G+ + + YE G V RGDG +GED++ +R I +IP N P I+EVRGE ++ Sbjct: 121 GSALALTYENGFLVRGVTRGDGVTGEDITPNVRTIRSIPLRLNIDNPPAIVEVRGEAFLP 180 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 + F +N E G +ANPRNAA+G LR+L+P + + F + Q Sbjct: 181 LDTFDKINQEREEKGESLFANPRNAAAGTLRQLDPKIVDKRRLQFFAYTLHLDDNHITTQ 240 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 ++ L ++ +GF VN + + + YY + + R L Y DG+V K+++ Q + Sbjct: 241 WQSLDRLETMGFLVNPHRQLCPSLQEVAQYYQDWQEKRHQLAYMTDGVVVKINDLQRQNR 300 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG + PRW I+ K+ ++ T + DI + +GRTG +TP+A +EPV + G + ATLH Sbjct: 301 LGFTQKFPRWAIALKYPAEEVPTVVKDIIVNVGRTGAVTPMAVMEPVQVAGTTVQRATLH 360 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D + L DIRVGD V++++AGE+IP+VV I+ R PF P+ C Sbjct: 361 NSDRVAEL-----------DIRVGDTVIIRKAGEIIPEVVRILPELRPSQTLPFQMPTNC 409 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P CQS +VR + A RC +C A + H+ SRDA +I GLG++ + Sbjct: 410 PECQSPLVRPVGE------AVTRCVNS-SCPAILRGSVVHWASRDALDIRGLGEKVVILL 462 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + + +D+++L++ T+I + G+ S NL ++ + +N S R + Sbjct: 463 IEQ----GLVTAISDLYSLEK------TEIAKLDRMGEKSALNLITAMAQSKNQSWSRVL 512 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + LGIR+VG+ A+ LA+ + + + A L V +G+ IAQ++ + Sbjct: 513 YGLGIRYVGSVNAKILAESFRTVEELANA----------SVTDLASVYGIGEEIAQSVYD 562 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQL 673 +++ N V L + + + K V TGTL ++R +A+E + + Sbjct: 563 WFRIAANRDLVAKLQAAGLQFAAAAKTTTTKATLAGKTFVITGTLPTLKREEAKELIEKA 622 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G V+ +S+KTD +++G+ GSKLEKA +LG+ + E Q L L++ Sbjct: 623 GGKVTGSVSKKTDYLVLGEAAGSKLEKALELGITQLTEAQLLELIK 668 >gi|91204173|emb|CAJ71826.1| strongly similar to DNA ligase [Candidatus Kuenenia stuttgartiensis] Length = 674 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 242/706 (34%), Positives = 374/706 (52%), Gaps = 49/706 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++++ L I YHD YY + P I D EYD L R + A P+L P+ P Sbjct: 5 VKEKIEQLRCIIRYHDYKYYVENNPEISDYEYDQLLRELQNLESAHPELI---TPDSPTQ 61 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++ + V H P LS++ ++ E+L++F RI R + +I + +E KIDG Sbjct: 62 RVADQPISQFPTVEHKKPMLSIDNTYSNEELKEFDQRIKRMAGIDANTNIEYVVELKIDG 121 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-----LSLNIPEIIEVRGEV 191 IT+ YE G FV A RGDG G+DV+A ++ I IP IP ++E+RGE+ Sbjct: 122 IAITLWYENGLFVRGATRGDGFRGDDVTANLKTIRQIPLKLSVSGAHYKIPPVVEIRGEI 181 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+ +F +N+E G +ANPRNAA+G L+ L+P R L F + +G + Sbjct: 182 YLPNKEFQRINEEREEKGEIQFANPRNAAAGSLKLLDPRITAKRRLKMFAYVIGYVEGME 241 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L ++ +G PVN+ + +V Y NE R L Y +DG+V KV+ + Sbjct: 242 LESHVQCLDFIKAIGLPVNSYAQLCKNIDEVVRYCNEWDKRRGILDYMVDGMVIKVNSLA 301 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG +++PRWMIS KF +QA TR+ +I +Q+G+TG LTPVA L PV + G ++ Sbjct: 302 LQEQLGATSKAPRWMISFKFQPEQAITRIEEIVVQVGKTGTLTPVANLAPVLLAGTTVSR 361 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D +K +D+RVGD V+V++AGE+IP+VV ++ +R + F Sbjct: 362 ASLHNFDEVKR-----------KDVRVGDYVVVQKAGEIIPQVVKVLEEKRSGREKVFVE 410 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C+ V RD + RC L C AQ R+++F RDA +IEGLG Sbjct: 411 PACCPVCKGPVHRDNSE------VYLRCHNPL-CKAQTKRRIQYFAGRDAMDIEGLGPAI 463 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + +DIF+LQ + + G S +NL +I R L Sbjct: 464 IEQLVDK----GLVDDYSDIFSLQYDDLVN------LERMGKKSSSNLISAIENSRGRDL 513 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +R I +LGI +VG A L++++ S L ++ +G ++AQ Sbjct: 514 DRLICALGIHNVGLHTAEVLSEHFDSLGKLLNAT----------ADELKKIHEIGPVVAQ 563 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG--RHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 +IVEF+QN ++ L+ + + SS++ K V TG LQK R A++ Sbjct: 564 SIVEFFQNKHTREIIKKLVAKGVNTEKLTSDIPRKSSKVAGKSFVITGKLQKYSRSDAEK 623 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 + +LG VS+ +S KT+ +I G++PGSKL KA++LGV I++EE F Sbjct: 624 LIKRLGGRVSSAVSGKTNYLIAGEDPGSKLGKAKELGVVILDEEAF 669 >gi|166364069|ref|YP_001656342.1| DNA ligase [Microcystis aeruginosa NIES-843] gi|254781371|sp|B0JTW2|DNLJ_MICAN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166086442|dbj|BAG01150.1| DNA ligase [Microcystis aeruginosa NIES-843] Length = 669 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 219/706 (31%), Positives = 359/706 (50%), Gaps = 45/706 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++ L+ E+ YY P I DS YD L R + I +P L P+ P Sbjct: 6 EIQQRCQQLKTELQRASYAYYVLDDPFIPDSVYDQLYRELEDIEKRYPQLI---TPDSPT 62 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G +++ V H+IP SLE +N+E+L K+ R R+ + D + E KID Sbjct: 63 QRVGDKISSQFVSVRHNIPLYSLENAFNLEELNKWGNRWQRYVNETQD--TEYVCELKID 120 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYIS 194 G+ + + YE G V RGDG +GED++ +R I +IP N P I+EVRGE ++ Sbjct: 121 GSALALTYENGFLVRGVTRGDGVTGEDITPNVRTIRSIPLRLNIDNPPAIVEVRGEAFLP 180 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 + F +N E +ANPRNAA+G LR+L+P + + F + Q Sbjct: 181 LDTFDKINQEREEKRESLFANPRNAAAGTLRQLDPKIVDKRRLQFFAYTLHLDDNNITNQ 240 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 ++ L ++ +GF VN + + + YY + + R L Y DG+V K+++ Q + Sbjct: 241 WQSLDRLESMGFLVNPHRQLCPSLQQVAQYYQDWQEKRHQLAYMTDGVVVKINDLQRQNR 300 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG + PRW I+ K+ ++ T + DI I +GRTG +TP+A +EPV + G + ATLH Sbjct: 301 LGFTQKFPRWAIALKYPAEEVPTVVKDIIINVGRTGAVTPMAVMEPVQVAGTTVQRATLH 360 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D + L DIRVGD V++++AGE+IP+VV I+ R PF P+ C Sbjct: 361 NSDRVAEL-----------DIRVGDTVIIRKAGEIIPEVVRILPELRPNHTSPFQMPTNC 409 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P CQS +VR + A RC +C A + H+ SRDA +I GLG++ + Sbjct: 410 PECQSPLVRPVGE------AVTRCVNS-SCPAILRGSVVHWASRDALDIRGLGEKVVILL 462 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + + +D+++L++ T+I + G+ S NL ++ + +N S R + Sbjct: 463 IEQ----GLVTAISDLYSLEK------TEIAKLDRMGEKSALNLITAMAQSKNQSWSRVL 512 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + LGIR+VG+ A+ LA+ + + + A L + +G+ IAQ++ + Sbjct: 513 YGLGIRYVGSVNAKILAESFRTVEELANA----------SVTDLASIYGIGEEIAQSVYD 562 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQL 673 +++ N V L + + + K V TGTL ++R +A+E + + Sbjct: 563 WFRIEANRDLVAKLQAAGLQFAAAAKTTTTKATLAGKTFVITGTLPTLKREEAKELIEKA 622 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G V+ +S+KTD +++G+ GSKLEKA +LG+ + E Q L L++ Sbjct: 623 GGKVTGSVSKKTDYLVLGEAAGSKLEKALELGITQLTEAQLLELIK 668 >gi|184157078|ref|YP_001845417.1| NAD-dependent DNA ligase [Acinetobacter baumannii ACICU] gi|254778156|sp|B2HUJ5|DNLJ_ACIBC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|183208672|gb|ACC56070.1| NAD-dependent DNA ligase [Acinetobacter baumannii ACICU] Length = 673 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 252/713 (35%), Positives = 377/713 (52%), Gaps = 47/713 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L Q I+ H+ YY +P I DSEYD L + A+ +P+L ++ + P K+ Sbjct: 3 EQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQA---DSPTTKV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG+ VTH +P LSL ++N EDL F R+ + + + +E K+DG Sbjct: 60 GGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERL---PNQKVQYEVELKLDGLA 116 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVRGEVYISK 195 I++ YE G V RGDG +GED++ ++ I +P+VL EI +EVRGEV + K Sbjct: 117 ISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMPK 176 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF-AKG 253 + F LN + A G K +ANPRNAA+G LR+L+P F+ +G+ + Sbjct: 177 SGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLTT 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ LQ + LGF + N+ + Y +++ R L +IDG+V KVD+ Q+ Sbjct: 237 MHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQQ 296 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 QLG +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG ++N TL Sbjct: 297 QLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTL 356 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN I L D+R+GD V V R G+VIPKV + R +A+ P Sbjct: 357 HNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPES 405 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S VV A RC+GGL C+AQ++E ++HFVSR A +IEGLG + ++ Sbjct: 406 CPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGLGDRWVES 459 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + ++ ADI+ L ++ + I G+ SV NL D+I + +L RF Sbjct: 460 LLR----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASKKTTLARF 511 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I++LGIR VG AR LA + + + + +L + P VGDI A+ I Sbjct: 512 IYALGIRGVGETTARMLANTFQTLEALKAA----------NVEALKKTPDVGDITAEWIA 561 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +F+ P NI ++ L+ + + V TGTL+++ R +A + + L Sbjct: 562 DFFLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQAL 620 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 GA VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y TL Sbjct: 621 GARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTLS 673 >gi|297538570|ref|YP_003674339.1| DNA ligase, NAD-dependent [Methylotenera sp. 301] gi|297257917|gb|ADI29762.1| DNA ligase, NAD-dependent [Methylotenera sp. 301] Length = 682 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 253/704 (35%), Positives = 385/704 (54%), Gaps = 47/704 (6%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 L Q I+ +D YY P + DSEYD + R I P+L P+ P ++ Sbjct: 22 RCQQLRQLIAQYDHEYYVLDAPSVPDSEYDLVYRDLQDIERQHPNLI---TPDSPTQRVS 78 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G + +TH LSL + +L F R+ ++ + + +EPK DG I Sbjct: 79 GSAANAFNSITHRQAMLSLNNAFEDSELEAFDKRVREALGQE---QVEYAVEPKFDGLAI 135 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKNDF 198 T+ YE G F A RGDG++GEDV+ +R + +IP N P+++EVRGEV + K DF Sbjct: 136 TLTYENGIFTQGATRGDGYTGEDVTHNLRTVRSIPMRLNCENAPKLLEVRGEVLMFKRDF 195 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA-KGQYE 256 LN +A G K +ANPRNAA+G LR+L+ TR L+FF +GLG A Sbjct: 196 EKLNQAQLAKGEKLFANPRNAAAGSLRQLDAKITATRPLSFFAYGLGVADGAPALGSHSM 255 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + + L FPV+ + G+ YY ++ +R+ LP+DIDG+VYKV++F+ Q +LG Sbjct: 256 AMDYLANLYFPVSEVRQLVMGVTGLRDYYQKIGQLRNELPFDIDGVVYKVNQFNQQNELG 315 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +R+PRW I+HKF ++A T + DI++Q+GRTG +TPVARL PV +GG +TNATLHNE Sbjct: 316 FVSRAPRWAIAHKFPAQEALTVVEDINVQVGRTGAITPVARLAPVFVGGVTVTNATLHNE 375 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D ++ +D+ +GD V V+RAG+VIP+VV +++ R DA+ F P+ CP Sbjct: 376 DEVRR-----------KDVHIGDTVSVRRAGDVIPEVVSVVLERRLADARRFEMPTACPE 424 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +++ + A RCTGGL C AQ+ + + HF SR A +IEGLG++ +D + Sbjct: 425 CGSHILKQADE------AVARCTGGLFCPAQRKQAITHFASRRAMDIEGLGEKLVDQLVE 478 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 A + ADI+ L ++ + S N+ D+++ + +L RFI++ Sbjct: 479 ----ANLVHTLADIYQLNLETLSN------LDRMATKSAQNILDALDHSKITTLARFIYA 528 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LG+R+VG A+ LAK++ + Q D SL+ V VG ++A++I F Sbjct: 529 LGMRNVGEATAKDLAKHFGNLSALMQA----------DAASLLTVNDVGPVVAESISNFL 578 Query: 617 QNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 N + AL +S ++ + + K V TGTL + R A+E + +G Sbjct: 579 GEQHNQDVIRALQHAGISWPETEGKQLATGHLLGKSFVLTGTLPTLSRDAAKEMIEAVGG 638 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 VS +S+KTD ++ G + GSKL+KAQ+LG+ I++E L LL Sbjct: 639 KVSGSVSKKTDFVVAGSDAGSKLDKAQELGLVILDEAGLLALLA 682 >gi|319793880|ref|YP_004155520.1| DNA ligase, NAD-dependent [Variovorax paradoxus EPS] gi|315596343|gb|ADU37409.1| DNA ligase, NAD-dependent [Variovorax paradoxus EPS] Length = 694 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 246/719 (34%), Positives = 374/719 (52%), Gaps = 66/719 (9%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L +++ H YY P + D+EYD L +R A+ FP+L P+ P ++GG++ Sbjct: 14 LSEQLHKHAHLYYVLDAPELPDAEYDKLFQRLQALETEFPEL---RTPDSPTQRVGGKVL 70 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLR-----KFITRIYRFWQKKDDNS-IFFTLEPKIDGT 137 KV H +P LS I D+ F R+ + +D + + E K DG Sbjct: 71 DGFTKVRHKVPMLS---IRTETDITPGGASAFDARVRKELGLAEDGPQVSYVCELKFDGL 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + +RYE G V AA RGDG GEDV+ IR + IP LS P ++EVRGEVY+ + D Sbjct: 128 AMNLRYEDGVLVQAATRGDGEVGEDVTQNIRTVREIPLRLSGKAPPVVEVRGEVYMKRAD 187 Query: 198 FLALNDEMI------AVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSE-- 248 F ALN+ K + NPRNAA+G +R+L+P +FF +GLG+ + Sbjct: 188 FDALNERQREKIAAGQKNEKIFVNPRNAAAGAVRQLDPAIAAARPLSFFAYGLGEVTPAA 247 Query: 249 ---IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 Q++ LQ+ GFPV +A +++++ + R LPYDIDG+VYK Sbjct: 248 EGGPDCPTQFDWLQQFHAWGFPVATQTARATGAIELIAFHENIGRQRDALPYDIDGVVYK 307 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD LQ+QLG +R PRW ++HK+ ++ T +L I+IQ+GRTG LTPVA+L PV +GG Sbjct: 308 VDSIELQRQLGFVSREPRWAVAHKYPAQEQLTDVLGIEIQVGRTGKLTPVAKLAPVFVGG 367 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV----VDIIVNER 421 +TNATLHNED + +D+RVGD V+V+RAG+VIP+V + + Sbjct: 368 VTVTNATLHNEDEARR-----------KDVRVGDTVIVRRAGDVIPEVVGVVPESLAKPE 416 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 F+ P CP+C S VR+ +RCTGGL C+AQ+ E + HF +R A Sbjct: 417 GERGPVFTMPHKCPVCGSEAVREEEE------VDYRCTGGLFCAAQRKEAILHFAARRAV 470 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +++GLG + ++ A IR D++ L T + + + S NL D+ Sbjct: 471 DVDGLGDRLVEQLVD----ANLIRTLPDLYKL------GFTTLAGLDRMAEKSAKNLVDA 520 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 + + +L RF+F LGIRHVG A+ LAK++ L+ V Sbjct: 521 LEASKKTTLPRFLFGLGIRHVGESTAKDLAKHFGKLDAIMDATE----------QQLLEV 570 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 VG ++AQ++ F+ P N VE L ++ G + V TGTL Sbjct: 571 NDVGPVVAQSLRTFFDQPHNREVVEQLRACGLTWEEGEPAARAPKPLAGLTFVITGTLPT 630 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R +A++ + GA V+ +S+KT ++ G+ GSKL+KA+++GV +++E + L +L+ Sbjct: 631 LGRDEAKDKLEAAGAKVAGSVSKKTHYLVAGEEAGSKLDKAREIGVAVIDEARMLEILE 689 >gi|212634787|ref|YP_002311312.1| NAD-dependent DNA ligase [Shewanella piezotolerans WP3] gi|254781417|sp|B8CN91|DNLJ_SHEPW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|212556271|gb|ACJ28725.1| NAD-dependent DNA ligase [Shewanella piezotolerans WP3] Length = 668 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 243/705 (34%), Positives = 380/705 (53%), Gaps = 50/705 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E+ L Q+++ H+ YY P I D EYD L +R + P+ A++ + P ++G Sbjct: 7 EILELTQQLNLHNYHYYVDDNPTIPDVEYDRLLKRLIELETQSPEFAKA---DSPTQRVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE ++TH P LSL+ +++ + F +RI K ++ + EPK+DG + Sbjct: 64 GEALAKFEQITHLKPMLSLDNVFDETEFNGFHSRITD----KVGTALSYCCEPKLDGLAV 119 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198 +I Y G F AA RGDG +GE+++ +R I +IP L N P ++EVRGEV + F Sbjct: 120 SIVYRDGVFERAATRGDGQTGENITENVRTIKSIPLKLRGDNFPPLVEVRGEVIMPHKAF 179 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS---EIFAKGQ 254 ALN+ A G K + NPRNAA+G LR+L+ +R L F+ + LG A Sbjct: 180 NALNERARAKGEKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPESWELADSH 239 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 Y L+++R G PV+ V+ ++ ++ YYN+++ RS+L ++IDG+V KV++ + Q Sbjct: 240 YGQLEQLRSWGVPVSQEVKVCDSVTEVMDYYNDIQQRRSSLDFEIDGVVLKVNQIAHQLS 299 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A++PRW + KF ++ T L +D Q+GRTG +TPVARL+PV +GG ++NATLH Sbjct: 300 LGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLH 359 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I L ++VGD ++++RAG+VIP++V I+ ++R DAQ FP C Sbjct: 360 NADEIARL-----------GVKVGDTIIIRRAGDVIPQIVAIVADKRPDDAQDIVFPERC 408 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S V R A RC+GGL C AQ+ E +KHF SR A +I+G+G + ++ Sbjct: 409 PVCDSEVERIEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDIDGMGDKVVEQL 462 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 E + PAD+F L + + + G S T L +I + + RF+ Sbjct: 463 IDKE----LVESPADLFKLTA------SAMTMLERMGMKSATKLVAAIEVAKETTFARFL 512 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LGIR VG A +LA Y+ + I+V VG I+A + Sbjct: 513 YALGIREVGEATAANLAAYFKTLDAL----------KGASAEEFIKVDDVGAIVAAHLAH 562 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F P N+ ++ L+ E ++ + V TGTL ++ R+ A+ + L Sbjct: 563 FLAQPHNLEVIDKLIAVGVSWPAIEEVAEEDLSLKGQTWVLTGTLTQLNRNDAKAQLQAL 622 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 GA V+ +S+ TD ++ G GSKL KAQ+LGVK+++EE + +L Sbjct: 623 GAKVAGSVSKNTDCLVAGAAAGSKLTKAQELGVKVIDEEALIAIL 667 >gi|126729669|ref|ZP_01745482.1| DNA ligase, NAD-dependent [Sagittula stellata E-37] gi|126709788|gb|EBA08841.1| DNA ligase, NAD-dependent [Sagittula stellata E-37] Length = 714 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 293/713 (41%), Positives = 435/713 (61%), Gaps = 15/713 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + ++ +QAR+EL +L + + Y+ P + D+EYD LKRR I FP L Sbjct: 14 TEVGQMTEDQAREELRALSDILGQANRAYHAEDAPELTDAEYDRLKRRNAEIEARFPQLK 73 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 + + P ++G KV H + LSL ++ +D+R F I R+ D + Sbjct: 74 LA---DSPSEQVGAAPVDGFSKVRHEVRMLSLANAFDDDDIRDFDDSIRRYLGLGTDAPL 130 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 FT EPKIDG + +RYE GK V AA RGDG GEDV+A R I IP L+ PE++E Sbjct: 131 AFTAEPKIDGLSLALRYENGKLVRAATRGDGSEGEDVTANARTIDDIPTDLTGA-PEVLE 189 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY+S DF ALN+ A G K +ANPRNAA+G LR+L+ R L FF + G Sbjct: 190 VRGEVYMSHADFEALNERQTARGGKTFANPRNAAAGSLRQLDAKITAERPLKFFAYAWGV 249 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S+ A+ Q + ++ LGF N + ++++Y ++++ R+TL YDIDG+VYK Sbjct: 250 LSDPLAETQKGAIDRLNALGFQTNPLTALCDGPEEMLNHYRKVEAQRATLGYDIDGVVYK 309 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ +LQ++LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV +GG Sbjct: 310 VNDLALQERLGFRSTTPRWAIAHKFPAELAWTRLESIDIQVGRTGALSPVARLTPVTVGG 369 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHNEDYI G D+SG +RGG+DIR+GD V V RAG+VIPKV D+ +++R DA Sbjct: 370 VVVSNATLHNEDYIAGRDSSGNEIRGGKDIRIGDWVQVYRAGDVIPKVADVDLSQRPEDA 429 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 QP+ FP+ CP C S +R+ A RC+GGL C AQ +E+LKHFV R AF+IEG Sbjct: 430 QPYVFPTKCPECGSDAIREEG------DAVRRCSGGLICPAQAVEKLKHFVGRSAFDIEG 483 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG +Q++ F+ IR P DIFTL+ R + +++N G+G+ S NL+ +I++R Sbjct: 484 LGAKQVEQFYAD----GWIREPVDIFTLRDRYGSGIQQLKNREGWGEKSALNLFSAIDER 539 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R+I L R IF LGIRHVG + LA++Y ++ F + + + W L+ + VG Sbjct: 540 RHIPLGRLIFGLGIRHVGESASNLLARHYGTWAIFEAAMKDAATMEGEAWDDLLSINGVG 599 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++AQ++V +++ L+ + S + K +VFTG+L+++ R + Sbjct: 600 TVLAQSLVSAMNQEAERASMDRLVAHLDVEEAVRPDTDGSPVAGKIVVFTGSLERMTRAE 659 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ +GA VS +S+KTDI+++G GSK +KA++LG+ +++E+ +L L+ Sbjct: 660 AKARAEAMGAKVSGSVSKKTDIVVIGPGAGSKEKKARELGLTVLDEDAWLELI 712 >gi|116626792|ref|YP_828948.1| DNA ligase, NAD-dependent [Candidatus Solibacter usitatus Ellin6076] gi|122251346|sp|Q01NV7|DNLJ_SOLUE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116229954|gb|ABJ88663.1| DNA ligase, NAD-dependent [Candidatus Solibacter usitatus Ellin6076] Length = 662 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 233/706 (33%), Positives = 365/706 (51%), Gaps = 48/706 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ E+ L +++ +H+ YY KP I D+EYDAL R + PDL P+ Sbjct: 1 MKDPAVEIEKLREQLHHHEHLYYVLDKPEITDAEYDALMHRLQELETKHPDLL---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG+ KV HS P LSL+ N +LR F R+ + + E K Sbjct: 58 PTQRVGGKPREGFIKVRHSSPMLSLDNALNEAELRDFDRRVRDLLG---GAAFRYVTELK 114 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG + Y GKF A RGDG +GEDV+ R I ++P + +P EVRGE + Sbjct: 115 MDGLSMAAHYNNGKFTEAVTRGDGTTGEDVTENARTIRSLPLRVKTKLPA-FEVRGETVM 173 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 S+ F LN + G +ANPRNAA+G LR+L P +R L ++ + L + Sbjct: 174 SRRAFERLNTDRDEKGLSRFANPRNAAAGSLRQLEPQVTASRRLEYYTYFLLTEGRPAYE 233 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 +E L ++ +GF VN+ R ++ ++++ + R LPY+IDG+V KVD Q Sbjct: 234 SHWEALTALKQMGFKVNDKSRPCDSIDEVLAFCAHWEGERENLPYEIDGVVVKVDSVEQQ 293 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG A++PRW I++K+ +QA+T + ID+Q+GRTG LTPVA L+PV +GG ++ AT Sbjct: 294 RRLGFTAKAPRWAIAYKYPARQATTMIEGIDVQVGRTGALTPVANLKPVVVGGVTVSRAT 353 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I+ L +++GD V+V+R+G+VIPKVV + + +PF PS Sbjct: 354 LHNEDEIERL-----------GLQIGDEVVVERSGDVIPKVVRVSSQGSY--RKPFKMPS 400 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C +++VR+ AA RC C A+ E + HF SR NI+G+G +D Sbjct: 401 HCPVCNTKIVREEGE------AASRCINA-NCPARLKESILHFASRGVMNIDGMGDALVD 453 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 E + AD++ L+ + G S N+ +I+K R SL R Sbjct: 454 QLVDRE----IVHNIADLYDLKIEDLMD------LDRMGVKSAGNVIRNIDKSRRNSLPR 503 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 + +LGIR VG A LA+ + S + L + VG +A+A+ Sbjct: 504 VLTALGIRFVGERTAVFLAQAFGSMDAIERAT----------VDELQQAEEVGPKVAEAV 553 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 V+F+ P N V+ L K + + + V TGTL + R +A++ + Q Sbjct: 554 VQFFSIPDNRELVDRLRKADLQFTYAYSRPKGGPLTGSTFVLTGTLPNLSREEAKQLIEQ 613 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G V++ +S+KT ++ G++ GSKL+KA QL ++++ E + +L Sbjct: 614 AGGKVASAVSKKTSYVVAGEDAGSKLDKAHQLNIRVITEAELHAML 659 >gi|220915846|ref|YP_002491150.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-1] gi|254781252|sp|B8JD56|DNLJ_ANAD2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219953700|gb|ACL64084.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-1] Length = 687 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 234/719 (32%), Positives = 362/719 (50%), Gaps = 42/719 (5%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + A L I D YY +P++ D+EYD L A+ P+L + Sbjct: 1 MKKADASARARELRDRIRAADHAYYVLDQPLLADAEYDRLMHELQALEAEHPELVTA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++ G + +V H P LSL + + ++L +F R+ R D + + +E Sbjct: 58 DSPTQRVSGAPSERFERVVHREPMLSLGNVQSDDELHEFDARVRRLLGLPDGEPVGYVVE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRA------IPTIPRVLSLNIPEII 185 PK+DG + + Y G F + RGDG +GEDV+A +R +P L P + Sbjct: 118 PKLDGLAVELVYRDGAFTSGSTRGDGVNGEDVTANLRVVGGLGANRGVPHALEGRPPPRV 177 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEV + K F A+N +++ G +P+ANPRNAA+G LR+L+ R L+F + Sbjct: 178 EVRGEVLLFKEHFEAMNRQLVRAGEEPFANPRNAAAGTLRQLDWRVTARRPLSFIAYEAL 237 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + +E L+++ GF N R+ +++Y + M R LPYD DG+V Sbjct: 238 LPGGDPWRTHWEKLEELAAWGFETNAENRRCRGLAEVLAYRDRMAERRFELPYDTDGIVV 297 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD+ +++LG ++ PRW ++ K+ ++ +TR+ I +GRTG+LTPV +PV + Sbjct: 298 KVDDLDWRRRLGAASKFPRWAVAFKYPPQEEATRIRRIWASVGRTGVLTPVVDFDPVRLS 357 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 GA++ ATLHNED ++ +DI GD VLV+RAGEVIP+VV + R Sbjct: 358 GAMVARATLHNEDEMRR-----------KDILEGDWVLVRRAGEVIPEVVKPLPERRTGA 406 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 QPF FP+ CP+C +RVVR+ K +RCTG AC AQ + RL HF R A +IE Sbjct: 407 EQPFRFPAECPVCGARVVREEGEK------VYRCTGA-ACPAQLVGRLCHFAQRRALDIE 459 Query: 485 GLGKQQLDFFFKS---EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 GLG++ + +D A +P +++ + + S N+ + Sbjct: 460 GLGEKLAAGLVERGQVKDFADLYAVPFEVWQQLFSRPRKEQDAGAARELPEKSAQNMVAA 519 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 + + R +L RF+F+LGI VG A +LA+++ D +L V Sbjct: 520 LERSRKTTLRRFLFALGIPQVGEATAATLARHFGDLARVMDA----------DEEALKGV 569 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 VG A I + Q P+N VE LL + K +V TG L + Sbjct: 570 RDVGPETAAEIRAWTQEPQNRRVVERLLAAGVTPEAEVVEAR-GPFAGKTVVLTGGLSTM 628 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R A+ + + G VS +SRKT +++ G++ GSKLEKA+ LGV+I EE+F+ LL++ Sbjct: 629 SRDDAKAEIERRGGKVSGSVSRKTYLVVAGEDAGSKLEKARSLGVRIAGEEEFVRLLKE 687 >gi|77463176|ref|YP_352680.1| DNA ligase [Rhodobacter sphaeroides 2.4.1] gi|123730578|sp|Q3J355|DNLJ_RHOS4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|77387594|gb|ABA78779.1| DNA ligase [Rhodobacter sphaeroides 2.4.1] Length = 704 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 303/714 (42%), Positives = 438/714 (61%), Gaps = 17/714 (2%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P++ L+ +A EL+ L + I + Y+ + P I D++YDALK R AI FP+L R Sbjct: 6 PVDQLTEAEAAAELARLAEAIEAANTAYHTHDAPQISDADYDALKVRNRAIEEQFPELRR 65 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 S + P +++GG + KV H + LSLE +++ ++ +I RI R+ D + Sbjct: 66 S---DSPSDRVGGALAEGFAKVRHDVRMLSLENAFDLAEVEDWIERIRRYLGHVGD--LL 120 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 FT EPKIDG +++RYEKG+ V AA RGDG +GE+V+ R I +P L P+++EV Sbjct: 121 FTAEPKIDGLSLSLRYEKGRLVQAATRGDGETGENVTENARTIADLPTELDGA-PDLLEV 179 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY+S DF ALN A G++ +ANPRNAA+G LR+L+P +R L FF + G Sbjct: 180 RGEVYMSHEDFAALNGRQEAAGQRLFANPRNAAAGSLRQLDPAVTASRPLRFFAYAWGAH 239 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE A Q+E + ++ LGF N R +++ + +++ R+ L YDIDG+VYKV Sbjct: 240 SEPLAATQHEAIARLAALGFATNPLTRLCTGPEELLAQHAQIERQRAALGYDIDGVVYKV 299 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ +LQ++LG RA +PRW I+HKFA + A T+L IDIQ+GRTG L+PVARL+PV +GG Sbjct: 300 DDLALQRRLGFRASTPRWAIAHKFAAQLAWTQLEGIDIQVGRTGALSPVARLKPVTVGGV 359 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ NATLHNEDYI G D+ G+ +RGG+DIRVGD V V RAG+VIPKV D+ ++ R A Sbjct: 360 VVANATLHNEDYIAGRDSKGQEIRGGKDIRVGDWVQVYRAGDVIPKVADVDLDRRPEGAA 419 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP CP C S +R+ + RCTGGL C AQQ+ERLKHFVSR AF+IEGL Sbjct: 420 PYRFPETCPECGSEAIREPG------DSVRRCTGGLICPAQQVERLKHFVSRAAFDIEGL 473 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q++ ++ IR PADIF L R + ++EN G+G S NL+ +I RR Sbjct: 474 GAKQVEALWRD----GWIRQPADIFELPNRYRDGMQRLENREGWGRKSAENLFAAIEARR 529 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 I+L R IF+LGIRHVG A LA +Y S+ F + +W L+ + VG Sbjct: 530 RIALHRLIFALGIRHVGETTATLLATHYGSWAAFEAAMTRAEVGAGPEWQDLLSIDGVGA 589 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++A ++V + AV+AL ++ V+S + K +VFTGTL+K+ R +A Sbjct: 590 VLATSLVTAFHQEAERAAVDALAAHLTVEDAEVRAPVASPVAGKIVVFTGTLEKMSRAEA 649 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA VS +S +TD+++ G GSK ++A LG++ ++E+ +L L+ Sbjct: 650 KARAEALGAKVSGSVSARTDLVVAGPGAGSKAKQAAALGIETIDEDGWLRLIGD 703 >gi|260584784|ref|ZP_05852529.1| DNA ligase, NAD-dependent [Granulicatella elegans ATCC 700633] gi|260157441|gb|EEW92512.1| DNA ligase, NAD-dependent [Granulicatella elegans ATCC 700633] Length = 668 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 220/709 (31%), Positives = 368/709 (51%), Gaps = 52/709 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++ L ++++ YY +P + D EYD + +P L S + P Sbjct: 4 SIEQKVQQLREQLNRWSHEYYVQDRPTVTDHEYDETYHELVRLETEYPQLVTS---DSPT 60 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + KVTH P LSL ++ EDL+ F RI + + +I + E KID Sbjct: 61 QRVGGVVLEGFEKVTHQNPMLSLSNAFSKEDLQAFDDRIKKLTNR----TIDYVCELKID 116 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+ G+ V A RGDG GED++ IR + ++P L IEVRGE Y+ K Sbjct: 117 GLSVALTYQDGQLVLGATRGDGVIGEDITHNIRTVKSVPLSLEHPWS--IEVRGECYMPK 174 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254 F LN G + +ANPRNAA+G LR+L+ +R L F++ + Q Sbjct: 175 KSFQQLNQLREEEGLEVFANPRNAAAGSLRQLDSKVAASRNLAVFLYQSPSVETLEVASQ 234 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E+L+KM+ LGF N ++ + ++ +M R+ LPY+IDG+V KV++F Q++ Sbjct: 235 MELLEKMQALGFVTNQESVLCHSIDEVWAFIEKMTVERNNLPYEIDGIVIKVNDFKAQEE 294 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 +G ++P+W I++KF ++A T + DI+ +GRTG++TP A ++ V + G + A+LH Sbjct: 295 IGFTVKAPKWAIAYKFPAEEAQTIVRDIEWTVGRTGVVTPTAVMDAVFLAGTTVKRASLH 354 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ RDIR+GD V++ +AG++IP+V +I+++R +P+ FP C Sbjct: 355 NVDLIR-----------ERDIRIGDTVVIHKAGDIIPEVTRVILDKRPEGLEPYEFPKEC 403 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + +V A RC C A E L HFVSRDA N+ G+G + + Sbjct: 404 PSCSNPLVHLEEE------VALRCMNPK-CPALLKEGLTHFVSRDAMNMSGVGTRIIHQL 456 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+S ++ AD++ L Q + + + S + +I + SLER + Sbjct: 457 FES----GLVQDVADLYHLTMEQLLT------LDKIKEKSAQKILQAIETSKQNSLERLL 506 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 LGIR+VG++ A+ LA ++ + +N + L+ + +G +IA +++ Sbjct: 507 TGLGIRNVGSKAAKDLAMHFETMENLQKAT----------VEELVAIEGLGLVIAHSVLA 556 Query: 615 FYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ +E L + + + S + K +V TGTL+++ R +A+E + Sbjct: 557 YFNQETVQDMLEELKEAGVNMRYLGKAKVAISEDSLLAGKTVVLTGTLEQMTRQEAKEAI 616 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LG V+ +S+KTDI+I G GSKL KA+ LG+ + +EEQF +++ Sbjct: 617 ESLGGKVTGSVSKKTDIVIAGAQAGSKLTKAESLGILVWDEEQFRTMIE 665 >gi|157964864|ref|YP_001499688.1| NAD-dependent DNA ligase LigA [Rickettsia massiliae MTU5] gi|166216234|sp|A8F2K5|DNLJ_RICM5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157844640|gb|ABV85141.1| DNA ligase, NAD-dependent [Rickettsia massiliae MTU5] Length = 689 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 272/712 (38%), Positives = 419/712 (58%), Gaps = 29/712 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ +S ++A+K L L +I+ ++ YY P++ DSEYD L + FP L Sbjct: 4 IDLISEKEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 N P K+G ++ KVTH +P LSL ++ +D+R F+ RI F + + I Sbjct: 64 ---NSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKNFLRLNEFAPI-- 118 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 EPKIDG + Y+ G A RGDG+ GED++A I+ I P N+PE +EVR Sbjct: 119 FCEPKIDGLSFSAVYKNGVLTTGATRGDGYVGEDITANIKTIKNFPH-KIDNVPEFLEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE+YI K DFL LN E G+ +ANPRNAA+G LR+L+ + R L +FV+ G T Sbjct: 178 GEIYIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDASITAKRPLKYFVYSGGVTE 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + A Q ++L K++ GF +N + A++ I ++Y +K+ R LPY+IDG+VYK++ Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNREDLPYEIDGVVYKLN 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +F+LQ ++G ARSPR+ +HKF T+LL I +Q+GRTG LTPVA LEP+ IGG Sbjct: 298 DFALQNRMGFIARSPRFATAHKFPAIIGQTQLLSITVQVGRTGTLTPVAELEPIEIGGVT 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN I +D+R+ D V ++RAG+VIPK++ + ++R D Sbjct: 358 VSRATLHNFQEIAR-----------KDVRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTAT 406 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P FC C S++ RC GL C AQ ER++HFVS++A +IEGLG Sbjct: 407 FDTPLFCLSCNSKLHYMPE------DIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q++F I P DIF L+ + +S K+EN+ G+G SV NL+ +I K +N Sbjct: 461 RKQVEFLIDK----GLISNPLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +SL RFI++LGIRH+G + A+ LA+ SY NF ++ + + D + L + +GD Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREVGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDK 576 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 I I++F+ NI ++ L + ++ + + SS + +K +VFTG+L I R +A+ Sbjct: 577 ILVDIIDFFDVKENIELIKKLGEILNIEDYKETREQSS-LTDKIVVFTGSLPTISRAEAK 635 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +LGA V+A +S TD+++ G + GSKL+KA++L +KI++EE++L L++ Sbjct: 636 ATAEKLGAKVTAGVSSNTDLVVAGVDAGSKLKKAKELNIKIIDEEEWLTLIK 687 >gi|262373317|ref|ZP_06066596.1| DNA ligase, NAD-dependent [Acinetobacter junii SH205] gi|262313342|gb|EEY94427.1| DNA ligase, NAD-dependent [Acinetobacter junii SH205] Length = 677 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 250/716 (34%), Positives = 381/716 (53%), Gaps = 47/716 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + +++ L Q I+ H+ YY +P I DSEYD L + A+ +P+ +++ Sbjct: 1 MEQNSVIEQMRQLIQLIAKHNHAYYVMDQPTITDSEYDHLFHQLKALEQQYPEFMQADT- 59 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P NK+GG+ VTH++P LSL ++N +DL F RI + + + +E Sbjct: 60 --PTNKVGGQALSKFESVTHAVPMLSLGNVFNQDDLFAFARRIDERL---PNQKVQYEVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPEIIEVR 188 K+DG I++ YE G + RGDG +GED++ ++ I +P++ IP+++EVR Sbjct: 115 LKLDGLAISLWYENGVLIRGVTRGDGETGEDITQNVKTIRNLPKILSSQHQAIPQLLEVR 174 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLG-KT 246 GEV + K+ F LN + A G K ANPRNAA+G LR+L+P F+ +G+ Sbjct: 175 GEVLMPKSGFEKLNADQEAKGEKTLANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCE 234 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ L + GF + + + Y +++ R L +IDG+V KV Sbjct: 235 PHHGLTTMHDSLHWLTKFGFEIAERQYLCESIEEVQQRYEQIQLERPNLKVEIDGMVVKV 294 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q+QLG +R PRW ++KF + A T++ +ID Q+GRTG LTPVARL PV +GG Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTKVENIDWQVGRTGTLTPVARLAPVFVGGV 354 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++N TLHN I L D+RVGD V V R G+VIPKV + R DA+ Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVERVWAEFRPADAE 403 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ CP+C S VV A RC+GGL C+AQ++E ++HFVSR A +IEGL Sbjct: 404 LVYLPTNCPVCDSPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ +R ADI+ L ++ K+ +I G+ SV NL D+I+ + Sbjct: 458 GDRWVESLLH----LDLLRDVADIYHLHEHRE----KLLSIEKMGEKSVQNLIDAIDASK 509 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI++LGIR VG AR LA + ++ + +L + P VGD Sbjct: 510 KTTLARFIYALGIRGVGETTARMLANTFQTFDALKAA----------NIDALKKTPDVGD 559 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I A+ IV+F+Q N+ +E LL + + V TGTL+ + R +A Sbjct: 560 ITAEWIVDFFQAEHNLEVLERLLAAG-IHWDAPTAPTRQPLNGESWVVTGTLESMGRDEA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + + LGA VS +S KT ++ G+ GSKL+KAQ+L +++MNE++FL L QY Sbjct: 619 TQRLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAQKLDIRVMNEQEFLDFLAQYG 674 >gi|258627076|ref|ZP_05721872.1| DNA ligase [Vibrio mimicus VM603] gi|258580594|gb|EEW05547.1| DNA ligase [Vibrio mimicus VM603] Length = 670 Score = 549 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 244/712 (34%), Positives = 382/712 (53%), Gaps = 48/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + L L Q + H YY P I D+EYD L R + A P+L P+ Sbjct: 1 MSNVEQRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG V H IP LSL+ ++ +L F R+ F EPK Sbjct: 58 PSLRVGGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRI--PAVQQSHFCCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192 +DG +++ YE G AA RGDG +GE+++ +R I +IP L + + +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGSDFPVRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE-IF 250 + K F ALN + G K + NPRNAA+G LR+L+ R L F+ + +G Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSRITAQRPLAFYAYSVGIIDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A Y+ +++ G P+ + + + ++Y ++ R +L Y+IDG+V KVD+ Sbjct: 236 ATSHYQRFLQLKRWGLPICPETKPVTSLIEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++N Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L + VGD V+++RAG+VIP++V +++ R DA+P F Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPIDAKPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS + R A RCTGGL C AQ+ E LKHFVSR A +++GLG + Sbjct: 405 PACCPVCQSEIERIEGE------AVARCTGGLICQAQRKEALKHFVSRKAMDVDGLGDKV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + PAD+F L+ T ++ + G S N+ D++NK + +L Sbjct: 459 IEQLVDRE----MVSTPADLFRLR------TGELTILERMGPKSAQNVIDALNKAKQTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA+++L+ AQ LI VP VG ++A Sbjct: 509 PRFLYALGIREVGEATALNLAQHFLTLDAIAQA----------SMDQLIEVPDVGGVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ RN + L++ + S + K +V TG+ ++ R+ A+ Sbjct: 559 HLHAFFAQSRNQQVIAELIELGITWPAMAVASSIAADSALAGKVVVLTGSFTQLSRNDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S+ TDI+ G+ GSKL KA +LG+++++E + L+ Sbjct: 619 AALQALGAKVTGSVSKNTDIVFAGEAAGSKLSKAAELGIQVLDEHALIDFLK 670 >gi|82701780|ref|YP_411346.1| DNA ligase, NAD-dependent [Nitrosospira multiformis ATCC 25196] gi|123754406|sp|Q2YBB7|DNLJ_NITMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|82409845|gb|ABB73954.1| DNA ligase, NAD-dependent [Nitrosospira multiformis ATCC 25196] Length = 707 Score = 549 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 254/733 (34%), Positives = 381/733 (51%), Gaps = 68/733 (9%) Query: 12 LSI--EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 +S + + + L I H+ YY+ P I D+++D L R + + P+L Sbjct: 1 MSERLSEISRHMRELRDAIELHNIRYYELDTPTIPDADFDKLFRELEELEQRHPELI--- 57 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++G + +V H P LSL + ++ F R+ + + + Sbjct: 58 TPDSPTQRVGIPPLKAFPQVVHRTPMLSLSNAFTEGEVEAFDRRVRQSLGIA---QVEYA 114 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-----RVLSLNIPEI 184 +EPK DG I++ YE G V A RGDG+ GEDV+ ++ I +IP S +P Sbjct: 115 VEPKFDGLAISLCYENGMLVSGATRGDGYIGEDVTLNLKTIRSIPLGLRAGDGSAEVPAF 174 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGL 243 +EVRGEV + K DF LN + K + NPRNAA+G LR+L+ R L FF +G+ Sbjct: 175 LEVRGEVLMLKADFERLNRQQREKNEKTFINPRNAAAGSLRQLDPCITANRNLRFFAYGI 234 Query: 244 GKTS--EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G + +L + L FPV R G++ Y++E+ +R L YDIDG Sbjct: 235 GVCEGGNVPHDTHSHLLDYLSSLRFPVMRERRTVTGVAGLLEYHHEINGLREQLSYDIDG 294 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 VYKV+E Q++LG +R+PR+ ++HKF ++A+T LL ID+Q+GRTG LTPVARL+PV Sbjct: 295 TVYKVNELEYQEKLGFVSRAPRFALAHKFPAQEATTELLGIDVQVGRTGALTPVARLKPV 354 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 +GGA +TNATLHNED I+ +D+ +GDRV V+RAG+VIP+VV + R Sbjct: 355 FVGGATVTNATLHNEDEIRR-----------KDVMIGDRVTVRRAGDVIPEVVAVQKESR 403 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 +A+PF P CP+C SR +R RCTGGL C AQ+ + + HF SR A Sbjct: 404 PSNAKPFVMPEHCPVCGSRTIRLPGET------LTRCTGGLFCPAQRKQAILHFASRRAM 457 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 NI GLG + +D + IR PAD++ + + + G+ S N+ + Sbjct: 458 NIHGLGDKLVDHLVDNA----IIRTPADLY------KLGLAALAALDRMGEKSAGNIINE 507 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I K ++ +L RFI+SLGIR+VG AR LA+Y+ D +L +V Sbjct: 508 IEKSKDTTLARFIYSLGIRNVGEATARDLARYFGGLDRLMDA----------DVETLQQV 557 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---------------RHEKNVSSE 646 VG ++AQ+I +F+ N VE L SS+ Sbjct: 558 SDVGPVVAQSIADFFGERHNREVVEQLRAAGIRWKEGAGTQTTDHAAGSAHPGAAAASSK 617 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 I + V TGTL + R +A+E + +G V+ +S+KTD ++ G + GSK +KA +LGV Sbjct: 618 IAGRSFVLTGTLPTMSREEAREKIEAMGGKVAGSVSKKTDYVVAGADAGSKYDKALELGV 677 Query: 707 KIMNEEQFLFLLQ 719 +++E + + LLQ Sbjct: 678 ALLDEAELIRLLQ 690 >gi|323490410|ref|ZP_08095622.1| DNA ligase [Planococcus donghaensis MPA1U2] gi|323395909|gb|EGA88743.1| DNA ligase [Planococcus donghaensis MPA1U2] Length = 668 Score = 549 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 239/715 (33%), Positives = 387/715 (54%), Gaps = 53/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + +A + + L + + + YY KP + D+ YD L + +PDL P Sbjct: 1 MDRLKAEQRVDELNEMLRNYGHAYYVLDKPAVPDAIYDQLLNELIDLETLYPDLVF---P 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG ++ KVTH P LSL ++ EDLR+F R+ K + + E Sbjct: 58 DSPTQRVGGAPLSTVDKVTHERPMLSLSNVFGEEDLREFDKRVRSGAGDK----VDYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YE GKFV A RGDG GED++ +R I IP L + +EVRGEV Sbjct: 114 LKIDGLAVSLLYEDGKFVKGATRGDGRVGEDITVNLRTIRAIPLKLKDAV--TLEVRGEV 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG-KTSEI 249 ++ K F ALN++ G + +ANPRNAA+G LR+L+P +R L+ F++G+G Sbjct: 172 FMPKKSFHALNEQRSEQGEELFANPRNAAAGSLRQLDPKIAASRNLDVFIYGIGGDGETY 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N + + +++Y + R+ LPY+IDG+V KV++F Sbjct: 232 RLAEHDESLDYLAKLGFKTNQERQVCTSVEEVLAYIEKWTEKRNDLPYEIDGIVIKVNQF 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q++LG A+SP+W ++KF ++ T + DI++ +GRTG++TP A L+PV++ G + Sbjct: 292 LYQQELGFTAKSPKWATAYKFPAEEVMTTVRDIELSVGRTGVVTPTAILDPVSVAGTTVQ 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED IK +DIR+GD+V++++AG++IP+VV +I+++R + PF Sbjct: 352 RASLHNEDLIK-----------EKDIRIGDKVIIRKAGDIIPEVVSVILDQRTGEELPFE 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACDSELVRIEGE------VALRCVNPQ-CPAQITEGLIHFVSRNAMNIDGLGEK 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ ++ + +DI+ L + Q + D S +NL +I+ R+ S Sbjct: 454 VIEQLYRE----GLVHDISDIYKLTKEQLV------ELDRMADKSASNLVAAIDASRSNS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +E+ +F LGIRHVG AR L++++ + + LI V +GD +A Sbjct: 504 MEKLLFGLGIRHVGERGARILSEHFGTLEQLIAATK----------EELIEVHEIGDKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIG----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +IV ++ N VE L + + ++ KK+V TG L+++ R + Sbjct: 554 DSIVMYFDNEEVRALVERLREANVNLSYTGTRVRVEEGANAFAGKKIVLTGKLEQMTRQE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A + LG ++ +S+KTD++I G+ GSKL+KA++L V+I +EE+ + L + Sbjct: 614 ASAQIEALGGKLTGSVSKKTDLLIAGEEAGSKLDKARELKVEIWDEERLVEELNK 668 >gi|257095174|ref|YP_003168815.1| NAD-dependent DNA ligase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047698|gb|ACV36886.1| DNA ligase, NAD-dependent [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 675 Score = 549 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 262/706 (37%), Positives = 383/706 (54%), Gaps = 46/706 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L SL EI +D YY P I D++YD L R A+ P+L + P ++ Sbjct: 5 ERLHSLRAEIERYDHEYYVLDAPSIADADYDRLFRELQALEAEHPELV---SRDSPTQRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG VTH+ LSL + +++ F R+ D + ++ EPK DG Sbjct: 62 GGAPLAEFAAVTHATAMLSLNNAFADDEVAAFDRRVREGL--ATDGEVDYSAEPKFDGLA 119 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197 + + Y KG V A RGDG +GE+V+A +R + ++P L + P +EVRGEV + ++D Sbjct: 120 VGLSYAKGILVCGATRGDGSTGENVTANLRTLRSVPLRLRASDWPAALEVRGEVLMWRSD 179 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-AKGQY 255 F LN G K + NPRNAA+G LR+L+P R L FF +G+ Sbjct: 180 FERLNARQREKGEKEFVNPRNAAAGGLRQLDPRITAQRPLRFFAYGIASGERAGLPATHS 239 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 L ++ GFPV R+ G+++YY +M S R++LPYDIDG+VYK+D+ + Q++L Sbjct: 240 AQLDQLERWGFPVARERRRVTGLAGLLAYYADMGSRRASLPYDIDGVVYKLDDLAAQERL 299 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +R+PR+ ++HKF ++A T LLDI IQ+GRTG LTPVARL PV +GG + NATLHN Sbjct: 300 GFLSRAPRFAVAHKFPAEEAVTELLDISIQVGRTGALTPVARLAPVFVGGVTVNNATLHN 359 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 ED I+ +++R+GD V+V+RAG+VIP+VV ++ + R A+ F P+ CP Sbjct: 360 EDEIRR-----------KNVRIGDVVVVRRAGDVIPEVVRVVPDRRPAGAREFVMPTSCP 408 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C SRVVR + A RC+GGL C AQ+ + L HF SR A +IEGLG + ++ Sbjct: 409 VCGSRVVRSADE------AVARCSGGLYCPAQRKQALLHFASRRALDIEGLGDKLVEQLV 462 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 S +R P D++ L + ++ D S NL +I + + +L RFIF Sbjct: 463 DSA----IVRTPGDLYRL------GLLALASLERMADKSAGNLLAAIERSKRTTLARFIF 512 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR+VG AR LA+++ S D SL +VP VG +AQ+I +F Sbjct: 513 ALGIRNVGEATARELARHFGSLDRLLAA----------DEDSLRQVPDVGPTVAQSIRQF 562 Query: 616 YQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 P N+ +E L S G + V TGTL + R A+ + G Sbjct: 563 CSEPHNLEVIEQLRAAGLVWSEGEPAVPAGGVFAGQVFVLTGTLPSLTREAAKAMIEAAG 622 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 VS +S+KT ++ G GSKLE+A QLGV++++E Q L LL+Q Sbjct: 623 GKVSGSVSKKTSFVVAGAEAGSKLERALQLGVQVIDEGQLLGLLEQ 668 >gi|295702476|ref|YP_003595551.1| DNA ligase, NAD-dependent [Bacillus megaterium DSM 319] gi|294800135|gb|ADF37201.1| DNA ligase, NAD-dependent [Bacillus megaterium DSM 319] Length = 668 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 241/715 (33%), Positives = 389/715 (54%), Gaps = 53/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E A+ + L ++ + YY +P + D+EYD L I +FP+L + Sbjct: 1 MEFETAKSRVQELRDLLNQYGYEYYVLDQPSVPDAEYDKLMNELIEIEDSFPELKTA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +IGG++ + KV H LSL +N EDLR F R+ + ++ + E Sbjct: 58 DSPTQRIGGQVLDAFEKVQHQTSMLSLGNAFNEEDLRDFDRRVR----QAVEDEFSYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G V A RGDG +GE+++ ++ I +IP + + +EVRGE Sbjct: 114 LKIDGLAVSLRYEDGYLVLGATRGDGTTGENITENLKTIRSIPLRIKEPLS--MEVRGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 ++ + F ALN+ + P+ANPRNAA+G LR+L+P R L+ FV+ + T E+ Sbjct: 172 FMPRKSFKALNEAKMERDEVPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYAMTDTGELE 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N + T +++Y ++ R L YDIDG+V KVD F Sbjct: 232 IDSHSESLNLLDELGFKTNKERQTCETIDDVIAYIESWQTQRPELSYDIDGIVVKVDSFD 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q +LG A+SPRW I++KF ++ T+L++I++ +GRTG++TP A LEPV + G + Sbjct: 292 QQAELGTTAKSPRWAIAYKFPAEEVVTKLVNIELTVGRTGVITPTAILEPVQVAGTTVQR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I +R + Q F+ Sbjct: 352 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIEEKRTGEEQEFTM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC +C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 PTHCPECESELVRLEEE------VALRCINP-SCPAQIREGLIHFVSRNAMNIDGLGEKV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ + I+ ADI+TL ++Q + G+ S NL +I + SL Sbjct: 454 ISQLFREQ----LIKDVADIYTLTKQQLI------ELERMGEKSADNLIAAIEASKENSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ A++LA+++ + + + L+ + +G +A Sbjct: 504 ERLLFGLGIRHVGAKAAKTLAQHFETIDKLTKAT----------YDELVAINEIGAKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 AIV ++ + L + + +NV S K +V TG L+++ R++ Sbjct: 554 AIVAYFTQEEVQELIHELKEYGVNLTYKGPKLVSVENVDSVFAGKTVVLTGKLEQLSRNE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ + LG V+ +S+KTD+++ G+ GSKL KA +L +++ +E + L L + Sbjct: 614 AKAQIEALGGKVTGSVSKKTDLVVAGEEAGSKLTKANELEIEVWDEARLLTELNK 668 >gi|94971682|ref|YP_593730.1| DNA ligase, NAD-dependent [Candidatus Koribacter versatilis Ellin345] gi|122986011|sp|Q1IHJ4|DNLJ_ACIBL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|94553732|gb|ABF43656.1| DNA ligase, NAD-dependent [Candidatus Koribacter versatilis Ellin345] Length = 673 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 231/714 (32%), Positives = 358/714 (50%), Gaps = 53/714 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + K+ L +++ YH+ YY P I D++YD + A+ P+L P+ P Sbjct: 5 KDPAKQAEDLREKLRYHEHRYYVLDDPEISDADYDVMMNELKALEAKHPELL---TPDSP 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG+ KV HS P LSL+ +N E+LR + R+ K I + E K+ Sbjct: 62 TQRVGGKPREGFVKVAHSAPMLSLDNAYNEEELRDWARRVEELSGKA---EIEYECELKL 118 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP------RVLSLNIPEIIEVR 188 DG + +RY+ +FV A RGDG GEDV+ +R + ++P + ++ EVR Sbjct: 119 DGLSMALRYQDARFVLAVTRGDGSIGEDVTLNLRTVKSVPLGVSSATLKKTHMLGDFEVR 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEV F +N++ G +ANPRNAA+G +R L P R L+F+ + L Sbjct: 179 GEVIFPTKSFEKMNEDREKQGLAKFANPRNAAAGAVRVLEPNITAQRRLDFYAYFLLVDG 238 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + Q E L + LGF VN+ + ++ + ++ + R LPY+IDG+V KV+ Sbjct: 239 RVHIDRQSEALDTLEKLGFKVNSNRAVFKSIDDVLKFIHKKEEDREKLPYEIDGVVIKVN 298 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +L ++LG ++PRW I++K+A + A T++ DI +Q+GRTG LTPVA L+PV IGG Sbjct: 299 STALWQRLGFTGKAPRWAIAYKYAARAAVTQVEDILVQVGRTGKLTPVAALKPVPIGGTT 358 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN D I L + +GD V V+R G+VIPKVV +I ++ HP + Sbjct: 359 VSRATLHNMDEIDRL-----------GLLIGDWVQVERGGDVIPKVVKVIDDKDHPRGKK 407 Query: 428 -FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F P CP C VVR A HRC C A+ E + HF SR NIEG+ Sbjct: 408 KFKMPERCPECGGHVVRTEGE------ADHRCVNA-NCPAKLRESILHFASRGVMNIEGM 460 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G ++ ++ ADI+ L + S + G S N+ D I + Sbjct: 461 GDSLVNQLVDR----GLVKNVADIYELDEEKLLS------LERMGKKSAQNILDEIKGTK 510 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + LER I+ LGIR VG A+ LA+++ S + + + G Sbjct: 511 KLPLERVIYGLGIRMVGERTAQFLAEHFGSLDGVMKATEEELLEVEEV----------GP 560 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 IAQ+I EF+ P N V+ L G ++ + + + V TG+L R +A Sbjct: 561 RIAQSIHEFFAEPSNRELVKRLEAAGLQFKGVKKER-GTALAGQTFVLTGSLPTYSRDEA 619 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ + G VS +S+KT+ ++ G+ GSKL+KA+ LGV +++E+ LL + Sbjct: 620 KKLIEDAGGKVSGSVSKKTNYVVAGEEAGSKLDKARDLGVAVIDEDALKKLLGK 673 >gi|88861394|ref|ZP_01136024.1| NAD-dependent DNA ligase [Pseudoalteromonas tunicata D2] gi|88816660|gb|EAR26485.1| NAD-dependent DNA ligase [Pseudoalteromonas tunicata D2] Length = 673 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 255/715 (35%), Positives = 398/715 (55%), Gaps = 47/715 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E ++++L+ ++ ++ YY P + DSEYD + R A+ +P Sbjct: 1 MT-ESVLSQIAALKVQLEEYNYQYYVLDNPSVPDSEYDRVMRELIALETQYPQFL---SA 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+GGE S +V H +P LSL+ ++ + R F R+ KD ++ F E Sbjct: 57 DSPSQKVGGEALGSFSQVQHLVPMLSLDNAFDETEFRSFNKRLQDRL--KDTTTLTFCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 PK+DG ++I Y+ G V AA RGDG +GE+++ ++ I +P L IP +EVRGE Sbjct: 115 PKLDGLAVSILYQDGVLVQAATRGDGQTGENITENVKTIRNVPLKLRGESIPHRLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE- 248 V++ F +N+ I K +ANPRNAA+G LR+L+ R L F+ +G+G Sbjct: 175 VFMDSAGFAKMNELAIKNDGKVFANPRNAAAGSLRQLDSKITAKRPLMFYAYGMGIIEGG 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + LQ + G P++ + ++YY ++ + RS L Y+IDG+V KV++ Sbjct: 235 VVPDDHFAQLQALGDWGLPMSPETKLVTGVDDALAYYQDIMNRRSQLKYEIDGVVIKVND 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ+ LG AR+PRW I+ KF ++ T+LLD++ Q+GRTG +TPVARLEPV +GG + Sbjct: 295 KALQQTLGFVARAPRWAIAFKFPAQEEMTQLLDVEFQVGRTGAITPVARLEPVFVGGVTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN+D I+ L +++GD V+++RAG+VIP++ +++ ER DA+ Sbjct: 355 SNATLHNQDEIERL-----------GVKIGDTVIIRRAGDVIPQITQVVLAERKTDAKDI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FPS CP+CQS+V R + A RC+GGL C AQ+ E +KHFVSR AF+I+G+G Sbjct: 404 VFPSNCPVCQSKVERTVGE------AVARCSGGLVCGAQRKEAIKHFVSRKAFDIDGMGD 457 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + E I PA+IFTL++ +E++ G S L +I + Sbjct: 458 KIVEQLVERE----LIHTPAEIFTLRQ------GHLESLERMGPKSAEKLVAAIGNAKQT 507 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF++SLGIR VG A +LA +YL+ SL V VG+I+ Sbjct: 508 TLARFLYSLGIREVGEATALNLANHYLTLDAIMAA----------SVDSLQEVADVGEIV 557 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQ 667 A+ + F++ N V+AL+ K+ + V TGTL ++ R A+ Sbjct: 558 AKHVNFFFREAHNRAVVDALIAAGITWAALEPKSEAEQPLAGLTYVLTGTLLQMGRSDAK 617 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + LGA VS +S KTD ++ GD GSKL KAQ+LG+K++ E+ + LL QYN Sbjct: 618 NRLQALGAKVSGSVSAKTDALVAGDKAGSKLTKAQELGIKVLFEDDLIALLAQYN 672 >gi|163751929|ref|ZP_02159142.1| DNA ligase, NAD-dependent [Shewanella benthica KT99] gi|161328212|gb|EDP99377.1| DNA ligase, NAD-dependent [Shewanella benthica KT99] Length = 690 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 254/722 (35%), Positives = 383/722 (53%), Gaps = 60/722 (8%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP----- 71 +E+ L EI+ HD Y+ PII DSEYD LK + + + FP L D Sbjct: 8 ISQEIEHLISEINEHDHRYHVLDDPIITDSEYDRLKIKLKKLENRFPALNLILDLNAVSE 67 Query: 72 --------NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 + P ++GG+ ++TH P LSL+ ++N E+ F R+ Sbjct: 68 GVHTSIRFDSPSRRVGGKALSKFDQITHLKPMLSLDNVFNDEEFEAFHARLTNRLG---- 123 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIP 182 ++ F EPK+DG ++I Y G AA RGDG GED++ +R I +IP L N P Sbjct: 124 TTLRFCCEPKLDGLAVSILYRDGVLERAATRGDGEIGEDITENVRTIRSIPLKLRGDNFP 183 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 ++EVRGEV + K F +LN+ A G K + NPRNAA+G LR+L+ +R L F+ + Sbjct: 184 PLLEVRGEVIMPKQAFDSLNERARAKGEKEFVNPRNAAAGSLRQLDSKITASRSLGFYAY 243 Query: 242 GLGKTSEIFA---KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 LG Y L +++ GFPV+ V+Q ++ +++YY ++ + RS L Y+ Sbjct: 244 ALGVVEPETWGLADHHYGQLLQLKSWGFPVSAEVKQCDSVSEVIAYYTDIMTRRSALAYE 303 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+V KVD + Q +LG A++PRW + KF ++ T L +D Q+GRTG +TPVARL Sbjct: 304 IDGVVIKVDNIAQQLKLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARL 363 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 +P+ +GG ++NATLHN D I L +++ D V+V+RAG+VIP++V I+ Sbjct: 364 KPIFVGGVTVSNATLHNADEIARL-----------GVKIKDTVIVRRAGDVIPQIVAIVA 412 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 +R DA FP CP+C S V R RCTGGL C AQ+ E +KHF SR Sbjct: 413 EKRPDDACEIEFPQTCPVCDSLVERIEGE------VVARCTGGLFCEAQRKEAIKHFASR 466 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+G+G + ++ E + PAD+F L S + I + G S TNL Sbjct: 467 KALDIDGMGDKVVEQLIDKE----LVESPADLFKL------SASAITMLDRMGLKSATNL 516 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +I + + RF+++LGIR VG A +LA Y+ S + Sbjct: 517 VAAIEVAKKTTFPRFLYALGIREVGEATAANLANYFKSLDKLKAA----------NAEEF 566 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGT 657 I+V VG I+AQ + F+ N+ V++L++ E S ++ + V TGT Sbjct: 567 IKVDDVGTIVAQHLTHFFAQSHNVEVVDSLIEAGVNWPVIEEVAEESLSLKGQTWVLTGT 626 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L ++ R+ A+ + LGA V+A +S+ TD ++ G+ GSKL KAQ LG+KI++E+ L + Sbjct: 627 LTQLNRNDAKAQLQALGAKVAASVSKNTDCLVAGEAAGSKLTKAQDLGIKILDEDGLLAV 686 Query: 718 LQ 719 L Sbjct: 687 LA 688 >gi|15610151|ref|NP_217530.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis H37Rv] gi|31794191|ref|NP_856684.1| NAD-dependent DNA ligase LigA [Mycobacterium bovis AF2122/97] gi|121638896|ref|YP_979120.1| NAD-dependent DNA ligase LigA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662865|ref|YP_001284388.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis H37Ra] gi|148824204|ref|YP_001288958.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis F11] gi|161350059|ref|NP_337609.2| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis CDC1551] gi|167967816|ref|ZP_02550093.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis H37Ra] gi|215431968|ref|ZP_03429887.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis EAS054] gi|219559049|ref|ZP_03538125.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T17] gi|224991388|ref|YP_002646077.1| NAD-dependent DNA ligase [Mycobacterium bovis BCG str. Tokyo 172] gi|254365649|ref|ZP_04981694.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis str. Haarlem] gi|260188040|ref|ZP_05765514.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis CPHL_A] gi|260206343|ref|ZP_05773834.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis K85] gi|289448688|ref|ZP_06438432.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis CPHL_A] gi|289553196|ref|ZP_06442406.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 605] gi|289571216|ref|ZP_06451443.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis T17] gi|289575722|ref|ZP_06455949.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis K85] gi|289755132|ref|ZP_06514510.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis EAS054] gi|294993895|ref|ZP_06799586.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 210] gi|297635642|ref|ZP_06953422.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis KZN 4207] gi|297732640|ref|ZP_06961758.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis KZN R506] gi|306777310|ref|ZP_07415647.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu001] gi|306785860|ref|ZP_07424182.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu003] gi|306789901|ref|ZP_07428223.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu004] gi|306794711|ref|ZP_07433013.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu005] gi|306798954|ref|ZP_07437256.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu006] gi|306969091|ref|ZP_07481752.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu009] gi|306973427|ref|ZP_07486088.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu010] gi|307081136|ref|ZP_07490306.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu011] gi|307085740|ref|ZP_07494853.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu012] gi|313659972|ref|ZP_07816852.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis KZN V2475] gi|54036987|sp|P63973|DNLJ_MYCTU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|54036988|sp|P63974|DNLJ_MYCBO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215822|sp|A1KN09|DNLJ_MYCBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166216214|sp|A5U726|DNLJ_MYCTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781375|sp|C1AGD0|DNLJ_MYCBT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|2791611|emb|CAA16099.1| PROBABLE DNA LIGASE [NAD DEPENDENT] LIGA (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+]) [Mycobacterium tuberculosis H37Rv] gi|31619786|emb|CAD96726.1| PROBABLE DNA LIGASE [NAD DEPENDENT] LIGA (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+]) [Mycobacterium bovis AF2122/97] gi|121494544|emb|CAL73025.1| Probable dna ligase [nad dependent] ligA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134151162|gb|EBA43207.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis str. Haarlem] gi|148507017|gb|ABQ74826.1| DNA ligase (NAD dependent) LigA [Mycobacterium tuberculosis H37Ra] gi|148722731|gb|ABR07356.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis F11] gi|224774503|dbj|BAH27309.1| NAD-dependent DNA ligase [Mycobacterium bovis BCG str. Tokyo 172] gi|289421646|gb|EFD18847.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis CPHL_A] gi|289437828|gb|EFD20321.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 605] gi|289540153|gb|EFD44731.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis K85] gi|289544970|gb|EFD48618.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis T17] gi|289695719|gb|EFD63148.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis EAS054] gi|308214358|gb|EFO73757.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu001] gi|308329532|gb|EFP18383.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu003] gi|308333670|gb|EFP22521.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu004] gi|308337029|gb|EFP25880.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu005] gi|308340842|gb|EFP29693.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu006] gi|308353381|gb|EFP42232.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu009] gi|308357226|gb|EFP46077.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu010] gi|308361179|gb|EFP50030.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu011] gi|308364771|gb|EFP53622.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu012] gi|323718395|gb|EGB27569.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis CDC1551A] gi|326904628|gb|EGE51561.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis W-148] gi|328457668|gb|AEB03091.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 4207] Length = 691 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 219/723 (30%), Positives = 351/723 (48%), Gaps = 43/723 (5%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P + + ++ +L +E+ H YY PII D+E+D L RR +A+ P+L Sbjct: 4 PDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL-- 61 Query: 68 SEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P+ P +GG V H LSL+ + ++L + RI+ Sbjct: 62 -RTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAH--- 117 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIP 182 + E KIDG +++ Y +G+ A+ RGDG +GEDV+ R I +P L +P Sbjct: 118 -YLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVP 176 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 E++EVRGEV+ +DF ALN ++ G+ P+ANPRN+A+G LR+ +P R L H Sbjct: 177 EVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICH 236 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 GLG ++ +R G PV+ A G+ + R + ++IDG Sbjct: 237 GLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDG 296 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V KVDE +LQ++LG +R+PRW I++K+ ++A T+LLDI + +GRTG +TP A + PV Sbjct: 297 VVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPV 356 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G+ + ATLHN IK + + +GD V++++AG+VIP+V+ +V R Sbjct: 357 KVAGSTVGQATLHNASEIKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVELR 405 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 + F P+ CP C S + + + A RC C Q ER+ H SR+ Sbjct: 406 DGSEREFIMPTTCPECGSPLAPE-----KEGDADIRCPNARGCPGQLRERVFHVASRNGL 460 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +IE LG + +++ I ++F L R T G + L + Sbjct: 461 DIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVN 516 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 ++K + L R + +L IRHVG AR+LA + S A L V Sbjct: 517 LDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAIAAA----------STDQLAAV 566 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 VG IA A+ E++ + V+ + +++V + +V TG+L Sbjct: 567 EGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGF 626 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R A+E + G + +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F LL Sbjct: 627 SRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLLADG 686 Query: 722 NTT 724 + Sbjct: 687 PAS 689 >gi|148982028|ref|ZP_01816589.1| NAD-dependent DNA ligase LigA [Vibrionales bacterium SWAT-3] gi|145960667|gb|EDK26012.1| NAD-dependent DNA ligase LigA [Vibrionales bacterium SWAT-3] Length = 670 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 252/710 (35%), Positives = 384/710 (54%), Gaps = 47/710 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 E + L L + + YH YY P I D EYD L ++ I P+L + Sbjct: 2 KESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEEENPELVTV---DS 58 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG+ +VTH IP LSL+ ++ EDL F R+ + F EPK Sbjct: 59 PSQRVGGQPLDGFTQVTHEIPMLSLDNAFSDEDLDAFNKRMSDRAPTANLK--TFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG +++ Y G V AA RGDG +GE+++ +R I +IP L PE IEVRGEV+ Sbjct: 117 LDGLAVSLLYVNGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE-IF 250 + K F LN+ + G K + NPRNAA+G LR+L+ R L F+ + +G Sbjct: 177 MPKAGFDKLNEMALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVVEGAEL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + Y+ +++ G P+ +Q ++ + +YY ++ + R L Y+IDG+V KVD+ + Sbjct: 237 STSHYQRFLQLKGWGLPMCPETKQLSSLEDVKAYYQDIMTRRDALAYEIDGVVIKVDDIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+ LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEP+ +GG ++N Sbjct: 297 AQEVLGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L ++VGD V+++RAG+VIP++V ++ + R A+ F Sbjct: 357 ATLHNADEIARL-----------GVKVGDSVIIRRAGDVIPQIVAVVQDRRPETAKDIVF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++GLG + Sbjct: 406 PDACPVCNSSVERVEGE------AVARCTGGLVCQAQRKEALKHFVSRKALDVDGLGVKV 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + PAD+F L S I + G S N+ ++NK ++ +L Sbjct: 460 IEQLVDRE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVSALNKAKDTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF++SLGIR VG A +LA+++ + + + L+ V +GDI+A Sbjct: 510 ARFLYSLGIREVGEATAMNLAQHFKTLELVQAATH----------EQLVEVSDIGDIVAS 559 Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 I F+ +N VE L++ P I + +E K +V TG+L ++ R +A+ Sbjct: 560 HITAFFSQEKNRAVVEQLIELGVNWPVIEDVPDDQELPLEGKVVVLTGSLSQLGRSEAKA 619 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTDI+ G+ GSKL KAQ LG++I EE + LL Sbjct: 620 ALQALGAKVTGSVSKKTDILFAGEAAGSKLIKAQDLGIEIRTEEDLIALL 669 >gi|260550982|ref|ZP_05825187.1| DNA ligase [Acinetobacter sp. RUH2624] gi|260405930|gb|EEW99417.1| DNA ligase [Acinetobacter sp. RUH2624] Length = 691 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 254/720 (35%), Positives = 380/720 (52%), Gaps = 47/720 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I +++ L Q I+ H+ YY +P I DSEYD L + A+ +P+L ++ Sbjct: 14 MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQT--- 70 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+GG+ VTH +P LSL ++N EDL F R+ + + + +E Sbjct: 71 DSPTTKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERL---PNQKVQYEVE 127 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188 K+DG I++ YE G V RGDG +GED++ ++ I +P+VL EI +EVR Sbjct: 128 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 187 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247 GEV + K+ F LN + A G K +ANPRNAA+G LR+L+P F+ +G+ + Sbjct: 188 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAGRPLAFYAYGIAQCE 247 Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ LQ + LGF + N+ + Y +++ R +L +IDG+V KV Sbjct: 248 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPSLQVEIDGMVVKV 307 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q+QLG +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG Sbjct: 308 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 367 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++N TLHN I L D+RVGD V V R G+VIPKV + R +A+ Sbjct: 368 TVSNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 416 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C S VV A RC+GGL C+AQ++E ++HFVSR A +IEGL Sbjct: 417 VVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 470 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ + ++ ADI+ L ++ + I G+ SV NL D+I + Sbjct: 471 GDRWVESLLR----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASK 522 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI++LGIR VG AR LA + + + + L + P VGD Sbjct: 523 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA----------NVEVLKKTPDVGD 572 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I A+ I +F+ P NI ++ L+ + + V TGTL+++ R +A Sbjct: 573 ITAEWIADFFLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 631 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 + + LGA VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y TL Sbjct: 632 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKATKLGIPVMNETDFLSLMASYGQTLS 691 >gi|332653279|ref|ZP_08419024.1| DNA ligase, NAD-dependent [Ruminococcaceae bacterium D16] gi|332518425|gb|EGJ48028.1| DNA ligase, NAD-dependent [Ruminococcaceae bacterium D16] Length = 657 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 238/703 (33%), Positives = 368/703 (52%), Gaps = 50/703 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +E+ L +E++ + YY P + D +YD RR + + A P+L P+ P + Sbjct: 4 AQEILELRKELNQANFEYYVKDDPTMSDYDYDHKLRRLEELEGAHPELI---TPDSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG+ S +VTH +P SL+ +++ ++LR F R+ + + +++EPK+DG Sbjct: 61 VGGKALESFQQVTHRVPLESLQDVFDFDELRAFDQRVRGV-----EPKVSYSVEPKVDGL 115 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + Y+ G+FV A RGDG GEDV+ ++ + +IP + P + VRGEVY+ K Sbjct: 116 SVALEYQDGQFVRGATRGDGLVGEDVTENLKTVKSIPLSIPDV-PGTLIVRGEVYMPKKV 174 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 F ALN+E G +ANPRNAA+G LR+L+P R L+ V + E Sbjct: 175 FHALNEEREKRGEALFANPRNAAAGSLRQLDPKIAAQRRLDIAVFNIQWAENEDFHSHTE 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + + GF V V +T V + R P+DIDG V KVD+ + ++ LG Sbjct: 235 GINYLADKGFKVIPHV-ICSTIEEAVEQVKAIGEGRENYPFDIDGAVIKVDDLAQRQTLG 293 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ PRW ++K+ + +RL DI IQ+GRTG+LTP A LEPV + G +TNATLHN+ Sbjct: 294 STAKFPRWAAAYKYPPEVKPSRLTDIVIQVGRTGVLTPKAVLEPVRLAGTTVTNATLHNQ 353 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+I +DIR+GD VLV++AGE+IP+V+ +++ +R DA P+ FP CP Sbjct: 354 DFI-----------TEKDIRIGDTVLVRKAGEIIPEVLSVVMEKRPVDAVPYRFPDVCPE 402 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + V RD + A RCTG C AQ L L HF SRDA +IEGLG ++ K Sbjct: 403 CGAPVARDED------GAHIRCTGA-ECPAQLLRNLAHFASRDAMDIEGLGIAVVENLVK 455 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 A ++ P D++ L + G S NL +I K ++ L R +F+ Sbjct: 456 ----AGLVKTPGDLYFLHEEDV------AELERMGKKSAQNLLSAIEKSKSQDLSRLLFA 505 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 GIR VG + + LA+ + S N L +V +G I AQ+IV+++ Sbjct: 506 FGIRQVGQKAGKILAQRFGSLDNLQAAT----------VEELTQVDDIGAITAQSIVDWF 555 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 +P++ + L + +K K V TGTL + R +A + + G Sbjct: 556 ASPQSQHLIARLKEAGVNMQAE-QKGEDQRFAGKTFVLTGTLDRFTRAEATKMIEDRGGK 614 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + +S+KT ++ G+ GSKL KAQ+LGV ++ +E+FL L++ Sbjct: 615 AAGSVSKKTTYVVAGEAAGSKLRKAQELGVPVLTQEEFLALME 657 >gi|225873424|ref|YP_002754883.1| DNA ligase, NAD-dependent [Acidobacterium capsulatum ATCC 51196] gi|254781243|sp|C1F7S7|DNLJ_ACIC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|225792636|gb|ACO32726.1| DNA ligase, NAD-dependent [Acidobacterium capsulatum ATCC 51196] Length = 677 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 250/717 (34%), Positives = 365/717 (50%), Gaps = 53/717 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S A +++ SL + I +H+ YY +P I D +D L R+ + P+L P Sbjct: 1 MSHASAAQQIESLRESIRHHEYLYYVQDQPEIDDLAFDELMRKLQRLEAEHPELI---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG+ KV HS P LSL+ + + E+LR + R+ + + I + E Sbjct: 58 DSPTQRVGGKPKEGFAKVAHSRPMLSLDNVNSEEELRDWERRVREQAGQ--NAEIEYVCE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP------RVLSLNIPEII 185 K+DG + + Y G+ RGDG GEDV+ +R I ++P ++ +P Sbjct: 116 YKLDGLSMALHYRDGQLARGLTRGDGEIGEDVTTNVRTIRSVPLSIADGKLQQAKMPANF 175 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVH-GL 243 EVRGEV + F LN+E A G P ANPRNAA+G +R L P R L+F+ + L Sbjct: 176 EVRGEVVMPFTAFEKLNEEREAQGLAPAANPRNAAAGTIRTLEPNIVAQRRLDFYAYFAL 235 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 + E Q E L + LGF VN A + +V + N + RS L Y+IDG+V Sbjct: 236 TEKGEDAFGEQEEALDALATLGFRVNQHRHAAKSIETVVEFVNRAEEHRSRLGYEIDGVV 295 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV+ LQ++LG R+PRW +++KFA + T++ DI +Q+GRTG LTPVA L PV + Sbjct: 296 VKVNSAVLQRRLGYTGRAPRWAVAYKFAARSGVTQVEDIQVQVGRTGKLTPVAWLAPVQV 355 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +T ATLHN D I+ L +R+GD V ++R G+VIPKVV+++ + HP Sbjct: 356 GGTTVTRATLHNADEIERL-----------GLRIGDFVRIERGGDVIPKVVEVVDDAEHP 404 Query: 424 -DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 + F FP CP C S VVR A +RC C A+ E L HF SR N Sbjct: 405 RGTKHFHFPHACPACGSEVVRTPGE------ADYRCVNT-DCPARLRESLLHFASRGVMN 457 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEG+G+ + ++ +DI++L Q S + G S T L I Sbjct: 458 IEGMGEAIVMQLLGR----GLVKTVSDIYSLTEEQLVS------LERMGKKSATALLGEI 507 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 +K R L+R +F LGIR VG A++LA+ Y S Q L RV Sbjct: 508 DKSRQAPLDRVLFGLGIRFVGERTAQALAEEYGSMDALMQA----------SREELERVN 557 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 VG +++AI EF+ PRN VE L + G K S + V TGTL + Sbjct: 558 DVGPRVSEAIREFFDEPRNRDLVERLREAGLRFTGEKRKKTSQ-LAGLTFVLTGTLPGLS 616 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +A+ + G VS +S+KT+ ++ G + GSKLEKA LGV +++E + +L+ Sbjct: 617 RDEAKGKIENAGGHVSGSVSKKTNYVVAGADAGSKLEKANSLGVPVIDEAALIKMLE 673 >gi|294649516|ref|ZP_06726937.1| NAD-dependent DNA ligase LigA [Acinetobacter haemolyticus ATCC 19194] gi|292824577|gb|EFF83359.1| NAD-dependent DNA ligase LigA [Acinetobacter haemolyticus ATCC 19194] Length = 675 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 255/717 (35%), Positives = 377/717 (52%), Gaps = 47/717 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + +++ L Q I+ H+ YY +P I DSEYD L + A+ +P+ +++ Sbjct: 1 MEHNSVIEQMRQLIQLIAKHNHAYYVMDQPSISDSEYDHLFHQLKALEQQYPECIQADT- 59 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P NK+GG+ VTH +P LSL ++N E+L F RI + + + +E Sbjct: 60 --PTNKVGGQALSKFESVTHVVPMLSLGNVFNQEELFAFARRIDERL---PNQKVQYEVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188 K+DG I++ YE G V RGDG +GED++ ++ I +P+VLS I +EVR Sbjct: 115 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLSGQSQAIPQLLEVR 174 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247 GEV + K F LN + A G K +ANPRNAA+G LR+L+P F+ +G+ + Sbjct: 175 GEVLMPKQGFEKLNADQAAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCQ 234 Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ L + GF + + + Y +++ R L +IDG+V KV Sbjct: 235 PHHGLATMHDSLHWLTKFGFEIAERQYLCESIEEVQQRYEQIQQERPDLNVEIDGMVVKV 294 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q+QLG +R PRW ++KF + A T++ +ID Q+GRTG LTPVARL PV +GG Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTKVENIDWQVGRTGTLTPVARLTPVFVGGV 354 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++N TLHN I L D+RVGD V V R G+VIPKV + R DA+ Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWAEFRPTDAE 403 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ CP+C S VV A RC+GGL C+AQ++E ++HFVSR A +IEGL Sbjct: 404 IVHLPTNCPVCDSPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKALDIEGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ ++ ADI+ L ++ K+ I G+ SV NL D+I + Sbjct: 458 GDRWVESLLH----LDLLKDVADIYHLHTHRE----KLLTIEKMGEKSVQNLIDAIEASK 509 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI+ LGIR VG AR LA + + D SL + P VGD Sbjct: 510 KTTLARFIYGLGIRGVGETTARMLANTFQTLDALKAA----------DVESLKKTPDVGD 559 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I A+ I +F+Q P NI ++ L+ + + V TGTL+ + R +A Sbjct: 560 ITAEWIADFFQAPHNIEVLDRLMAAG-IHWDAPTAPTRQPLNGESWVVTGTLESMGRDEA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 + + LGA VS +S KT ++ G+ GSKLEKAQ+L +++MNE++FL L QY T Sbjct: 619 TQRLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAQKLEIRVMNEQEFLDFLAQYQT 675 >gi|157363572|ref|YP_001470339.1| DNA ligase, NAD-dependent [Thermotoga lettingae TMO] gi|190359296|sp|A8F541|DNLJ_THELT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157314176|gb|ABV33275.1| DNA ligase, NAD-dependent [Thermotoga lettingae TMO] Length = 678 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 232/707 (32%), Positives = 374/707 (52%), Gaps = 45/707 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 E +K + L +EI YH+ YY + PII D EYD L + + +P+L P+ Sbjct: 4 PEDIKKRIEKLREEIEYHNYRYYVLADPIISDEEYDRLMQELIELEKKYPELV---TPDS 60 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G ++ V HS P LSL+ ++ +R+F R+ + +K ++I + E K Sbjct: 61 PSQRVGEKVLDEFRSVEHSEPMLSLDNTYDEAQIREFDKRVRKLLEK---DTIEYVTELK 117 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG + +RYE G+FV RGDG G+D++ ++ + +IP +L + +EVRGE+Y+ Sbjct: 118 IDGVSVALRYENGRFVLGLSRGDGTRGDDITENLKKVRSIPLILREPV--TVEVRGEIYM 175 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 +F LN+E V +ANPRNA +G LR+L+ + R L+ F++ + + Sbjct: 176 PTEEFERLNEERKKVDGPLFANPRNATAGTLRQLDTSVIRNRRLDSFIYYVLSPERYGLQ 235 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q++ L+ ++ +GF VN + ++ Y+ + +S L Y +DG+V KV+ F+ Q Sbjct: 236 TQWDALKWLKKIGFKVNPYSQLCQNIDQVIDYWKQWIEKKSELSYWVDGVVVKVNHFNFQ 295 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 LG +RSPRW I+ KF ++A TR+L+I +Q+GRTGILTPVA LEP+ + G ++ + Sbjct: 296 SILGSTSRSPRWAIAFKFPAQRAKTRVLNIIVQVGRTGILTPVAELEPIQLAGTVVKRVS 355 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN DYI+ +DIR+GD+V V+++G +IP+VV +I +ER+ + PS Sbjct: 356 LHNFDYIE-----------EKDIRIGDQVYVEKSGGIIPQVVSVIADERNGSEKKIEIPS 404 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C +V + + A RC C A+ L+ FVSR A NI+GLG++ +D Sbjct: 405 KCPVCSGKVGKIDSE-----DVALRCLNP-HCPAKLKRALETFVSRGALNIKGLGEKLID 458 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 S ++ ADIF L + + G G + NL I + + L + Sbjct: 459 RLVDS----GLVKDIADIFYLTPFELSQLGS-----GIGQKMIANLLAQIEQAKKTPLHK 509 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 + LGI VG + AR L + + S + L ++ +G IA+ I Sbjct: 510 ILTGLGIPLVGEKTARILTQKFRSIKRLLSS----------SVDELTQIEGIGIEIAKNI 559 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 E++ N + + L K + S + N TGTL+ R + ++ V Sbjct: 560 REYFDNEKTRQIIGKLEKAGLNLEEKEAVVQSKILSNLTFAVTGTLKNFTRDQIKQLVQS 619 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LG V+ +S+ TD +IVGDNPGSKL KA+ LGVK++ E++FL ++ Sbjct: 620 LGGQVTDSVSKSTDYVIVGDNPGSKLTKARNLGVKLLTEDEFLQFVK 666 >gi|226953496|ref|ZP_03823960.1| DNA ligase [Acinetobacter sp. ATCC 27244] gi|226835781|gb|EEH68164.1| DNA ligase [Acinetobacter sp. ATCC 27244] Length = 675 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 254/717 (35%), Positives = 377/717 (52%), Gaps = 47/717 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + +++ L Q I+ H+ YY +P I DSEYD L + A+ +P+ +++ Sbjct: 1 MEHNSVIEQMRQLIQLIAKHNHAYYVMDQPSISDSEYDHLFHQLKALEQQYPECIQADT- 59 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P NK+GG+ VTH +P LSL ++N E+L F RI + + + +E Sbjct: 60 --PTNKVGGQALSKFESVTHVVPMLSLGNVFNQEELFAFARRIDERL---PNQKVQYEVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188 K+DG I++ YE G V RGDG +GED++ ++ I +P+VLS I +EVR Sbjct: 115 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLSGQSQAIPQLLEVR 174 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247 GEV + K F LN + A G K +ANPRNAA+G LR+L+P F+ +G+ + Sbjct: 175 GEVLMPKQGFEKLNADQAAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCQ 234 Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ L + GF + + + Y +++ R L +IDG+V KV Sbjct: 235 PHHGLATMHDSLHWLTKFGFEIAERQYLCESIEEVQQRYEQIQQERPDLNVEIDGMVVKV 294 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q+QLG +R PRW ++KF + A T++ +ID Q+GRTG LTPVARL PV +GG Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTKVENIDWQVGRTGTLTPVARLTPVFVGGV 354 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++N TLHN I L D+RVGD V V R G+VIPKV + R DA+ Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWAEFRPTDAE 403 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ CP+C S VV A RC+GGL C+AQ++E ++HFVSR A +IEGL Sbjct: 404 IVHLPTNCPVCDSPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKALDIEGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ ++ ADI+ L ++ K+ I G+ SV NL D+I+ + Sbjct: 458 GDRWVESLLH----LDLLKDVADIYHLHTHRE----KLLTIEKMGEKSVQNLIDAIDASK 509 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI+ LGIR VG AR LA + + D SL + P VGD Sbjct: 510 KTTLARFIYGLGIRGVGETTARMLANTFQTLDALKAA----------DVESLKKTPDVGD 559 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I A+ I +F+Q P NI ++ L+ + + V TGTL+ + R +A Sbjct: 560 ITAEWIADFFQAPHNIEVLDRLMAAG-IHWDAPTAPTRQPLNGESWVVTGTLESMGRDEA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 + + LGA VS +S KT ++ G+ GSKLEKAQ+L +++MNE++FL L QY Sbjct: 619 TQRLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAQKLEIRVMNEQEFLDFLAQYQA 675 >gi|126640855|ref|YP_001083839.1| DNA ligase [Acinetobacter baumannii ATCC 17978] gi|322506977|gb|ADX02431.1| DNA ligase [Acinetobacter baumannii 1656-2] gi|323516844|gb|ADX91225.1| DNA ligase, NAD-dependent [Acinetobacter baumannii TCDC-AB0715] Length = 669 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 252/711 (35%), Positives = 375/711 (52%), Gaps = 47/711 (6%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L Q I+ H+ YY +P I DSEYD L + A+ +P+L ++ + P K+GG Sbjct: 1 MRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQA---DSPTTKVGG 57 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + VTH +P LSL ++N EDL F R+ + + + +E K+DG I+ Sbjct: 58 QALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERL---PNQKVQYEVELKLDGLAIS 114 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVRGEVYISKND 197 + YE G V RGDG +GED++ ++ I +P+VL EI +EVRGEV + K+ Sbjct: 115 LWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMPKSG 174 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF-AKGQY 255 F LN + A G K +ANPRNAA+G LR+L+P F+ +G+ + + Sbjct: 175 FEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLTTMH 234 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + LQ + LGF + N+ + Y +++ R L +IDG+V KVD+ Q+QL Sbjct: 235 DSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQQQL 294 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG ++N TLHN Sbjct: 295 GFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHN 354 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 I L D+R+GD V V R G+VIPKV + R +A+ P CP Sbjct: 355 IGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCP 403 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C S VV A RC+GGL C+AQ++E ++HFVSR A +IEGLG + ++ Sbjct: 404 VCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLL 457 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + ++ ADI+ L ++ + I G+ SV NL D+I + +L RFI+ Sbjct: 458 R----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASKKTTLARFIY 509 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG AR LA + + + + +L + P VGDI A+ I +F Sbjct: 510 ALGIRGVGETTARMLANTFQTLEALKAA----------NVEALKKTPDVGDITAEWIADF 559 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + P NI ++ L+ + + V TGTL+++ R +A + + LGA Sbjct: 560 FLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGA 618 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y TL Sbjct: 619 RVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTLS 669 >gi|147678862|ref|YP_001213077.1| NAD-dependent DNA ligase [Pelotomaculum thermopropionicum SI] gi|190359268|sp|A5CZ68|DNLJ_PELTS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146274959|dbj|BAF60708.1| NAD-dependent DNA ligase [Pelotomaculum thermopropionicum SI] Length = 679 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 247/702 (35%), Positives = 368/702 (52%), Gaps = 57/702 (8%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 I +H+ YY +P I D++YD L R + + FP L P P ++GG Sbjct: 19 IEHHNYLYYVLDRPAITDAQYDRLMRELERLEKQFPALV---TPYSPTQRVGGRPREGFA 75 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 V H P LSL ++ +LR F R+ + + + +E KIDG +++ YE G Sbjct: 76 AVRHLSPMLSLANAFDERELRDFDRRVRQAL---PGEQVRYVVELKIDGLAVSLYYENGI 132 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RGDG +GED++ ++ + ++P L +P + EVRGE ++ K F LN+ Sbjct: 133 LVRGATRGDGDTGEDITENLKTVRSVPLRLRRPVPAL-EVRGEAFMPKEAFSRLNEGREE 191 Query: 208 VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF----------AKGQYE 256 G +ANPRNAA+G LR+L+P +R L+ FV+G G + E Sbjct: 192 AGETLFANPRNAAAGSLRQLDPKITASRQLDLFVYGTGYGEWGRAVFPDGERTAPQEHAE 251 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L+ ++ LGF VN R + +V Y ++ R LPY +DGLV KV+ + Q++LG Sbjct: 252 VLELLKELGFKVNPEYRLFDRLDELVEYCLGWQARRFELPYAVDGLVIKVNSLAQQERLG 311 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW +++KF +QA T++ DI +++GRTG+LTP A LEPV + G ++ ATLHNE Sbjct: 312 ATMKSPRWAVAYKFPPEQAVTKVKDIFVRVGRTGVLTPTAELEPVRLAGTTVSRATLHNE 371 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ +DIR+GD+VLV++AG++IP+VV ++ ER + ++ P CP Sbjct: 372 DIIR-----------EKDIRIGDKVLVQKAGDIIPEVVAVLKEERTGAEKAWAMPGRCPS 420 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + VVR AA RCT AC A+ E L HF SRDA +I GLG + Sbjct: 421 CGAGVVRAEGE------AAVRCTNM-ACPARLQEGLIHFASRDAMDIAGLGPAVIAQLVS 473 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 A + PAD++ L+ + G S NL ++I + SL R IF+ Sbjct: 474 ----AGLVGDPADLYALRYEDLV------PLERLGPKSARNLLEAIEASKGRSLARLIFA 523 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVG A+ LA +Y S L+ +P +G IA +IVEF+ Sbjct: 524 LGIRHVGERAAKILANHYQSLSGLMSATQ----------EELVNIPEIGPKIAASIVEFF 573 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 N +N ++ L+K ++ + K V TG L+ R +AQE + LG Sbjct: 574 SNEQNRKVIDKLVKAGVNTLTEKVIREGGGPLNGKVFVLTGVLKDFSRQQAQELIESLGG 633 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +S+ +SR TD ++ G+NPGSK EKA LGVKI++E +F L Sbjct: 634 RISSSVSRNTDFVVAGENPGSKYEKALTLGVKILDENEFREL 675 >gi|16077730|ref|NP_388544.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis str. 168] gi|221308499|ref|ZP_03590346.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis str. 168] gi|221312822|ref|ZP_03594627.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317746|ref|ZP_03599040.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis str. JH642] gi|221322025|ref|ZP_03603319.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis str. SMY] gi|7673987|sp|O31498|DNLJ_BACSU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|2632976|emb|CAB12482.1| DNA ligase [Bacillus subtilis subsp. subtilis str. 168] Length = 668 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 248/715 (34%), Positives = 404/715 (56%), Gaps = 53/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E A++ L + I+ + YY +P + D+EYD L + AI PDL P Sbjct: 1 MDKETAKQRAEELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDL---RTP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + + KVTH P LSL +N +DLR F R+ + + + + +E Sbjct: 58 DSPTQRVGGAVLEAFQKVTHGTPMLSLGNAFNADDLRDFDRRVRQSVG----DDVAYNVE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG +GED++ ++ I IP + N IEVRGE Sbjct: 114 LKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKM--NRELSIEVRGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F ALN+E I +P+ANPRNAA+G LR+L+P R L+ FV+ + + E+ Sbjct: 172 YMPKRSFEALNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + Q + L + LGF N ++ + +++ +E+++ R+ LPY+IDG+V KVD Sbjct: 232 VETQSQGLDFLDELGFKTNQERKKCGSIEEVITLIDELQAKRADLPYEIDGIVIKVDSLD 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG A+SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ Sbjct: 292 QQEELGFTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED IK +DIR+ D+V+VK+AG++IP+VV+++V++R + + FS Sbjct: 352 ASLHNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLVDQRTGEEKEFSM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 PTECPECGSELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ +R AD++ L + + + G+ S NL SI K + SL Sbjct: 454 ITQLFEEN----LVRNVADLYKLTKERVI------QLERMGEKSTENLISSIQKSKENSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIR +G++ A++LA ++ S +N + L+ V +G+ +A Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASK----------EELLAVDEIGEKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 A++ ++ + + L + ++ + ++ S K +V TG L+++ R++ Sbjct: 554 AVITYFHKEEMLELLNELQELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ + LG ++ +S+ TD++I G+ GSKL KAQ+L +++ NEEQ + L++ Sbjct: 614 AKAQIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEEQLMGELKK 668 >gi|291483102|dbj|BAI84177.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. natto BEST195] Length = 668 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 248/715 (34%), Positives = 402/715 (56%), Gaps = 53/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E A++ L + I+ + YY +P + D+EYD L + AI PDL P Sbjct: 1 MDKETAKQRAEELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDL---RTP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + + KVTH P LSL +N +DLR F R+ + + + + +E Sbjct: 58 DSPTQRVGGAVLEAFQKVTHGTPMLSLGNAFNADDLRDFDRRVRQAVG----DDVAYNVE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG +GED++ ++ I IP + N IEVRGE Sbjct: 114 LKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKM--NRELSIEVRGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F ALN+E I +P+ANPRNAA+G LR+L+P R L+ FV+ + + E+ Sbjct: 172 YMPKRSFEALNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + Q + L + LGF N ++ +++ +E+++ R+ LPY+IDG+V KVD Sbjct: 232 VETQSQGLDFLDELGFKTNQERKKCGDIEEVITLIDELQAKRADLPYEIDGIVIKVDSLD 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG A+SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ Sbjct: 292 QQEELGFTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED IK +DIR+ D+V+VK+AG++IP+VV+++V +R + + FS Sbjct: 352 ASLHNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLVEQRTGEEKEFSM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 PTECPECGSELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ +R AD++ L + + + G+ S NL SI K + SL Sbjct: 454 ITQLFEEN----LVRNVADLYKLTKERVI------QLERMGEKSTENLISSIQKSKENSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIR +G++ A++LA ++ S +N + L+ V +G+ +A Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASK----------EELLAVDEIGEKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 A++ ++ + + L + ++ + ++ S K +V TG L+++ R++ Sbjct: 554 AVITYFHKEEMLELLNELQELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ + LG ++ +S+ TD++I G+ GSKL KAQ+L +++ NEEQ + L++ Sbjct: 614 AKAQIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEEQLMGELKK 668 >gi|87119444|ref|ZP_01075341.1| NAD-dependent DNA ligase [Marinomonas sp. MED121] gi|86164920|gb|EAQ66188.1| NAD-dependent DNA ligase [Marinomonas sp. MED121] Length = 676 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 255/718 (35%), Positives = 395/718 (55%), Gaps = 47/718 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + ++S L ++ + Y+ +P + D+EYD R A+ PDL ++ Sbjct: 1 MS-DSITAQISELVNRLNDYSYAYHVKDEPKVSDAEYDLDYRTLIALEKQAPDLIQA--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G + + V H++P LSL+ ++ E L +F R+++ ++ + E Sbjct: 57 DSPTQRVGEKPDSGFQTVAHTVPMLSLDNAFSDEQLEEFEQRLFKLIGA---QALSYCCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG I++RYE G V RGDG +GED+++ I+ I +IP + P ++EVRGE Sbjct: 114 PKLDGLAISLRYEDGILVRGLTRGDGVAGEDITSNIKTIGSIPLKLRTQTPPPVLEVRGE 173 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-E 248 +Y+ K F ALN + G K + NPRNAA+G LR+L+P+ +R L + +G T Sbjct: 174 IYMPKAGFEALNKQAEEKGEKAFVNPRNAAAGSLRQLDPSITASRPLVLCAYSIGHTEGW 233 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 I Y+ L M GF N + + ++ G V YY + +R L YDIDG+VYKVD Sbjct: 234 IQPDSHYDSLTLMSQWGFKTNPLMEKVSSIKGCVDYYQRLTELRPDLTYDIDGIVYKVDS 293 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ++LG AR+PRW I+ KF ++A T++LD+D Q+GRTG +TPVARL+PV +GG + Sbjct: 294 LALQQELGFIARAPRWAIARKFPAEEAITQILDVDFQVGRTGAITPVARLDPVFVGGVTV 353 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN+D I L +RV D V ++RAG+VIP+VV +I ++R D+ Sbjct: 354 SNATLHNKDEINRL-----------GVRVKDFVSIRRAGDVIPQVVKVIHDKRGEDSAEV 402 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CPICQS + + A RC+GGL C AQ+ E LKHFVSR A +I+GLG Sbjct: 403 IFPEVCPICQSELEQVTGE------AVIRCSGGLVCGAQRKEALKHFVSRKAMDIDGLGD 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E I+ P DI+ L +++Q + + G+ SV L SI + Sbjct: 457 KLVEQLVDLE----FIKTPVDIYHLFKKKQ----ALLELERMGEKSVEKLLTSIEASKQT 508 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 RFI++LGIR VG AR+L +++ + + + SL++V VG I+ Sbjct: 509 EFHRFIYALGIREVGEATARTLTRHFKTLDKIIEA----------NTESLVKVDDVGPIV 558 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHKA 666 AQ + F+ N V ALL + + + + V TGTL ++R + Sbjct: 559 AQHLRRFFFKDSNKEMVMALLDAGLYWQEKEAASGETAQPLLGLTYVVTGTLTALKRDEV 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 ++ + LGA VS +S KT +I G+ GSKL KAQ LG++I++E L LL+++ Sbjct: 619 KDKLISLGAKVSGSVSAKTHCLIAGEKAGSKLTKAQDLGIQILDEAGMLALLEEHGVA 676 >gi|56751245|ref|YP_171946.1| NAD-dependent DNA ligase LigA [Synechococcus elongatus PCC 6301] gi|81299088|ref|YP_399296.1| NAD-dependent DNA ligase LigA [Synechococcus elongatus PCC 7942] gi|81596046|sp|Q5N2P4|DNLJ_SYNP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123728245|sp|Q31RL0|DNLJ_SYNE7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56686204|dbj|BAD79426.1| DNA ligase [Synechococcus elongatus PCC 6301] gi|81167969|gb|ABB56309.1| DNA ligase, NAD-dependent [Synechococcus elongatus PCC 7942] Length = 679 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 229/712 (32%), Positives = 343/712 (48%), Gaps = 44/712 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + + S L Q + YY +P++ D+ YD L R + P L P+ Sbjct: 9 TTTAIAQRASELRQLLQQASYAYYVLDQPVMEDAVYDRLYRELQDLEQQHPSLI---TPD 65 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++G + V H IP SLE ++ E+LR + R + + E Sbjct: 66 SPTQRVGEQPATGFESVQHRIPLYSLENAFDAEELRSWDQRWRK-LAPDVPADAGYVCEL 124 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEV 191 KIDG I + YE G V A RGDG GE+++A +R I +IP + PE +EVRGE Sbjct: 125 KIDGAAIALSYENGLLVRGATRGDGTRGEEITANLRTIKSIPLRLQTDQPPEWLEVRGEA 184 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 ++S F LN E G +ANPRNAA+G LR+L+P R L+FF + + ++ Sbjct: 185 FLSLTRFKQLNTEREKHGEALFANPRNAAAGTLRQLDPRIVAERQLDFFAYSIQGPNDWA 244 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q L ++ LGF V + T + Y+++ + R LPY DG+V K+ Sbjct: 245 NLDQAASLDCLQSLGFRVEPHRQTCPTLAEVEQYFSDWDARRRDLPYLTDGVVVKLQSRR 304 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG + PRW I+ K+ +A T+L + +Q+GRTG LTPVA PV + G ++ Sbjct: 305 LQDELGFTQKFPRWAIALKYPADEAPTQLQHVTVQVGRTGALTPVAEFSPVALAGTTVSR 364 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D ++ L D+ +GD ++V++AGE+IP+VV ++ + R DA+P Sbjct: 365 ATLHNADRLREL-----------DLHIGDTIVVRKAGEIIPEVVRVLTDLRPADAKPVVL 413 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C V R A RC C A L H+ SRDA +IEGLG++ Sbjct: 414 PEKCPECGQPVQRPEEE------AVTRCVNS-TCPAIVRGALTHWASRDALDIEGLGEKL 466 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + AD++ L + ++ FG+ S NL +I K R Sbjct: 467 VDQLVSK----GLVNAIADLYRLDA------PLLASLERFGEKSAQNLVQAIAKSRQQPW 516 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R ++ LGIRHVG+ A++LA + S + AQ L V +G IA Sbjct: 517 SRVLYGLGIRHVGSVNAKNLAATFTSAEALAQATP----------DELAAVYGIGSEIAD 566 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 A+ +++ N + AL + G S + + V TGTL + R++A+ + Sbjct: 567 AVHQWFTVATNQNLIAALEQAGLQLHGEAASPRSQALAGQTFVLTGTLPTLSRNEAKALI 626 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 G VS +S+KT ++ G+ GSKLEKA L + +NE Q L LL Q Sbjct: 627 EAAGGKVSGSVSKKTSYVVAGEEAGSKLEKAIALNIPQLNETQLLDLLAQAE 678 >gi|197121145|ref|YP_002133096.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. K] gi|254781542|sp|B4UDH6|DNLJ_ANASK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|196170994|gb|ACG71967.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. K] Length = 687 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 235/719 (32%), Positives = 364/719 (50%), Gaps = 42/719 (5%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + A L I D YY +P++ D+EYD L A+ P+L + Sbjct: 1 MKKADAPARARELRDRIRAADHAYYVLDQPLLADAEYDRLMHELQALEADHPELVTA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++ G + +V H P LSL + + ++L++F R+ R D + + +E Sbjct: 58 DSPTQRVSGAPSERFERVVHREPMLSLGNVQSDDELQEFDARVRRLLGLPDGEPVGYVVE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRA------IPTIPRVLSLNIPEII 185 PK+DG + + Y G F + RGDG +GEDV+A +R +P L P + Sbjct: 118 PKLDGLAVELVYRDGAFTSGSTRGDGVNGEDVTANLRVVGGLGANRGVPHALEGRPPPRV 177 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEV + K F A+N +++ G P+ANPRNAA+G LR+L+ R L+F + Sbjct: 178 EVRGEVLLFKEHFEAMNRQLVRAGEAPFANPRNAAAGTLRQLDWRVTARRPLSFIAYEAL 237 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + + +E L+++ GF N R+ +++Y + M R LPYD DG+V Sbjct: 238 LPGDDPWRTHWEKLEELAAWGFETNAENRRCRGLAEVLAYRDRMAERRFELPYDTDGIVV 297 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD+ +++LG ++ PRW ++ K+ ++ +TR+ I +GRTG+LTPV +PV + Sbjct: 298 KVDDLDWRRRLGAASKFPRWAVAFKYPPQEEATRIRRIWASVGRTGVLTPVVDFDPVRLS 357 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 GA++ ATLHNED ++ +DI GD VLV+RAGEVIP+VV + R Sbjct: 358 GAMVARATLHNEDEMRR-----------KDILEGDWVLVRRAGEVIPEVVKPLPERRTGA 406 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 QPF FP+ CP+C +RVVR+ K +RCTG AC AQ + RL HF R A +IE Sbjct: 407 EQPFRFPAECPVCGARVVREEGEK------VYRCTGA-ACPAQLVGRLCHFAQRRALDIE 459 Query: 485 GLGKQQLDFFFKS---EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 GLG++ + +D A +P +++ + + S N+ + Sbjct: 460 GLGEKLAAGLVERGQVKDFADLYAVPFEVWQQLFSRPRKEQDAGAARELPEKSAQNMVAA 519 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 + + R +L RF+F+LGI VG A +LA+++ D +L V Sbjct: 520 LERSRKTTLRRFLFALGIPQVGEATAATLARHFGGLARVMDA----------DEEALKGV 569 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 VG A I + Q P+N VE LL + K +V TG L + Sbjct: 570 RDVGPETAAEIRAWTQEPQNRRVVERLLAAGVTPEAEVVEAR-GPFAGKTVVLTGGLSTM 628 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R A+ + + G VS +SRKTD+++ G++ GSKLEKA+ LGV+I EE+F+ LL++ Sbjct: 629 SRDDAKAEIERRGGRVSGSVSRKTDLVVAGEDAGSKLEKARSLGVRIAGEEEFVRLLKE 687 >gi|108759370|ref|YP_633776.1| NAD-dependent DNA ligase [Myxococcus xanthus DK 1622] gi|123074067|sp|Q1D0P7|DNLJ_MYXXD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|108463250|gb|ABF88435.1| DNA ligase, NAD-dependent [Myxococcus xanthus DK 1622] Length = 672 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 250/713 (35%), Positives = 389/713 (54%), Gaps = 52/713 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 ++A L +E+++H+ YY P + D++YD L R + P L + P+ Sbjct: 3 DFQKAAARARELHRELAHHNYRYYVLDSPEVSDAQYDKLMRELQDLEAKHPSL---QTPD 59 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GG +V H P +SL I+ + L +F RI + I + EP Sbjct: 60 SPTQRVGGAAAEEFGEVVHRAPMISLANIFEDQGLTEFDERIRKLVGLPG---IAYVCEP 116 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVR 188 K+DG I +RYEKG FV A RGDG +GEDV++ +R I ++P L P+++EVR Sbjct: 117 KLDGLAIALRYEKGAFVQGATRGDGTTGEDVTSNLRTIRSLPMSLFPQDDVKVPDVLEVR 176 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN--PTDITRYLNFFVHGLGKT 246 GEV+I K DF LN++ G +ANPRNAA+G LR+L+ T F + Sbjct: 177 GEVFIRKKDFQKLNEKREEEGEPLFANPRNAAAGSLRQLDPRMTAARPLSVFLYECVPGE 236 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 K E L+ ++ LG P+N R+A G+ Y+ R LP+++DG+V KV Sbjct: 237 GVPVFKTHIEKLEYLKTLGLPINQ-YRRAEGLEGVRQAYDASLKGRHELPFEVDGMVVKV 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ +K+LG+ ++SPRW +++KF ++ ST ++DI IQ+GRTG LTPVA L+PV +GG Sbjct: 296 DDEDQRKRLGQVSKSPRWAVAYKFPPEEESTEVMDIGIQVGRTGALTPVAHLKPVKVGGV 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATLHNED ++ +D+R GD V V+RAG+VIP++V +++++R D+ Sbjct: 356 TVARATLHNEDELRR-----------KDVRKGDTVFVRRAGDVIPEIVSVVLSKRPADSA 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 PF FP CP+C + +D + A RCTG +C AQ +E+++HF SR A +IEGL Sbjct: 405 PFEFPKHCPVCDAVATKDED------GAIIRCTGA-SCPAQLVEKIRHFASRLAMDIEGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + + ++ AD++ L + + + GD S NL S+ + + Sbjct: 458 GDKLAAQLVST----GRVKAFADLYALTKEDLLT------LERMGDKSADNLIASLERSK 507 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF++SLGIRHVG A++LA+ + + + + RV VG Sbjct: 508 QTTQRRFLYSLGIRHVGDATAKALAEAFPRSEMLFEA----------SLEDISRVKDVGP 557 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I+AQ I F+Q P+N A+ ALL + K +V TG + + R +A Sbjct: 558 IMAQVIHTFFQEPQNQEAIRALLAAGV-QPAAPQVATGGPFVGKSVVLTGAMTGMTREQA 616 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E V + G V+ +SRKTD ++ G++ GSKL+KAQ+LGV+I++E+ FL +LQ Sbjct: 617 KEEVERRGGKVAGSVSRKTDFVVAGEDAGSKLKKAQELGVRILDEQAFLQMLQ 669 >gi|321314391|ref|YP_004206678.1| NAD-dependent DNA ligase LigA [Bacillus subtilis BSn5] gi|320020665|gb|ADV95651.1| NAD-dependent DNA ligase LigA [Bacillus subtilis BSn5] Length = 668 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 248/715 (34%), Positives = 403/715 (56%), Gaps = 53/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E A++ L + I+ + YY +P + D+EYD L + AI PDL P Sbjct: 1 MDKETAKQRAEELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDL---RTP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + + KVTH P LSL +N +DLR F R+ + + + + +E Sbjct: 58 DSPTQRVGGAVLEAFQKVTHGTPMLSLGNAFNADDLRDFDRRVRQSVG----DDVAYNVE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG +GED++ ++ I IP + N IEVRGE Sbjct: 114 LKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKM--NRELSIEVRGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F ALN+E I +P+ANPRNAA+G LR+L+P R L+ FV+ + + E+ Sbjct: 172 YMPKRSFEALNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + Q + L + LGF N ++ + +++ +E+++ R+ LPY+IDG+V KVD Sbjct: 232 VETQSQGLDFLDELGFKTNQERKKCGSIEEVITLIDELQAKRADLPYEIDGIVIKVDSLD 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG A+SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ Sbjct: 292 QQEELGFTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED IK +DIR+ D+V+VK+AG++IP+VV+++V +R + + FS Sbjct: 352 ASLHNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLVEQRTGEEKEFSM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 PTECPECGSELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ +R AD++ L + + + G+ S NL SI K + SL Sbjct: 454 ITQLFEEN----LVRNVADLYKLTKERVI------QLERMGEKSTENLISSIQKSKENSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIR +G++ A++LA ++ S +N + L+ V +G+ +A Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASK----------EELLAVDEIGEKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 A++ ++ + + L + ++ + ++ S K +V TG L+++ R++ Sbjct: 554 AVITYFHKEEMLELLNELQELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ + LG ++ +S+ TD++I G+ GSKL KAQ+L +++ NEEQ + L++ Sbjct: 614 AKAQIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEEQLMGELKK 668 >gi|326334401|ref|ZP_08200613.1| NAD-dependent DNA ligase LigA [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693368|gb|EGD35295.1| NAD-dependent DNA ligase LigA [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 670 Score = 547 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 221/711 (31%), Positives = 373/711 (52%), Gaps = 46/711 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + +++ +L E++ H+ YY P I D E+D + + H +P DPN P Sbjct: 3 DSVLQQIETLRTELNEHNYNYYVLDSPTISDYEFDQKLKHLQELEHQYPQYK---DPNSP 59 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GGE+ + + H SL+ ++ E+L+++ R+ + K + I F E K Sbjct: 60 TVRVGGEITKNFPTIVHEFRMYSLDNSYSKEELKEWEKRVLKLLGK---DKISFVCELKY 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I + Y+ GK V A RGDG G++++A +R I ++P L + PE +RGE+ I Sbjct: 117 DGASIDLTYDAGKLVQAVTRGDGIQGDEITANVRTIRSVPLTLKGDYPEYFHIRGEIIIL 176 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 K F +N++ IA G PY NPRN ASG L+ + T++ + + + + + Q Sbjct: 177 KEGFKRMNEQRIAEGEDPYMNPRNTASGSLKLQDTTEVAKRPLDCLLYYVVGNNLPIQTQ 236 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E L+K R GF V + ++ ++ + N + R LPY+ DG+V KV++F Q++ Sbjct: 237 FEGLRKAREWGFKVPTQSKLCHSTQEVMDFINYWDTHRHDLPYETDGVVIKVNDFQAQQE 296 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++SPRW I++KF ++ +T L I Q+GRTG +TPVA L PV + G ++ A+LH Sbjct: 297 LGYTSKSPRWAIAYKFKAEEVTTTLESISYQVGRTGAITPVANLTPVLLAGTIVKRASLH 356 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I L D+ +GD+V V++ GE+IPK+ + +ER +A +F + C Sbjct: 357 NADQIAKL-----------DLHLGDQVFVEKGGEIIPKITGVKTDERKANATTVTFITHC 405 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + +VR+ A H C C Q R++H++SR A +IEGLG + ++ Sbjct: 406 PECGTALVRNEGE------AQHYCPNAYGCPPQITGRIQHYISRKAMDIEGLGSETVELM 459 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ A I AD++ L+ Q + + G+ S N+ + I K + I +R + Sbjct: 460 FR----AGLIHNYADLYELKVEQIQN------LERMGERSAKNIIEGIEKSKEIPFDRVL 509 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG +A+ A+ Y + + F + L ++ +GD IAQ+++E Sbjct: 510 FALGIRMVGETVAKKFARIYKTLEAFRSAT----------YEQLTQIDEIGDRIAQSVIE 559 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F+ + RN +E L + N +S ++ K LV +G + R + + + Sbjct: 560 FFADDRNKVILERLQSYGVQFALKETANFPLSDILKGKTLVVSGVFARYSRDELKALIEN 619 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722 G V + +S KT ++ G+N G SKLEKA QLG+ I++E++F ++ + Sbjct: 620 HGGKVGSSISSKTSYVVAGENMGPSKLEKATQLGIPILSEKEFEQMIGEKK 670 >gi|260911472|ref|ZP_05918061.1| DNA ligase [Prevotella sp. oral taxon 472 str. F0295] gi|260634401|gb|EEX52502.1| DNA ligase [Prevotella sp. oral taxon 472 str. F0295] Length = 666 Score = 547 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 225/711 (31%), Positives = 359/711 (50%), Gaps = 49/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E + + L ++ +H+ YY + P + D E+D L R + P+ DPN Sbjct: 1 MEDIK-RIEELRNQLHHHNYLYYVQNSPTLSDQEFDHLMRELQDLEAKHPE---VYDPNS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G +++ +V H P LSL +N +++ + + + D E K Sbjct: 57 PTQRVGSDLSTGFTQVRHRYPMLSLANTYNEQEVASWYENVRKDL---DGQPFEVCCELK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 DG I++ YE+G+ V A RGDG G+DV+A +R I IP VL P+ E+RGE+ Sbjct: 114 YDGLSISLTYEQGRLVRAVTRGDGEQGDDVTANVRTIRAIPLVLPGTGYPDEFEIRGEIL 173 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + F LN E +ANPRNAASG L+ L+P + + + + Sbjct: 174 MPWKVFEQLNAEREKAEEPLFANPRNAASGTLKSLDPKLVAKRKLDAYLYYLLGDNVPSD 233 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 G YE L+ GF V+ G+R+AN+ I + N + R LP DG+V KV+ Q Sbjct: 234 GHYENLKTAEAWGFKVSEGIRKANSLEQIYEFINHWDTARHNLPVATDGIVLKVNSLRQQ 293 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +QLG A+SPRW I++KF ++ TRL ++ Q+GRTG +TPVA +EPV + G + AT Sbjct: 294 QQLGFTAKSPRWAIAYKFKAERVCTRLNEVTFQVGRTGAVTPVANMEPVLLAGTTVKRAT 353 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 L+NED+I+ L D+ +GD V V++ GE+IPK+V + V+ R PD QP F S Sbjct: 354 LNNEDFIRSL-----------DLHIGDNVFVEKGGEIIPKIVGVDVSHRSPDLQPVHFIS 402 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S +VR AA+ C C Q R++HF++R A NI+ +G + +D Sbjct: 403 NCPECGSPLVRYAGE------AAYYCPNDTGCPPQIKGRIEHFIARKAMNIDSIGPETID 456 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 +F+ +R AD++ ++ Q G S + I + ER Sbjct: 457 DYFRK----GIVRNVADLYEIRTEQING-------DGTRQKSAQKIVKGIQDSVSTPFER 505 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F+LGIR VG A+ LAK++ S L+ V VG +IA+++ Sbjct: 506 VLFALGIRFVGETTAKLLAKHFKSIDALMTATP----------EQLVEVEGVGTVIAESV 555 Query: 613 VEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 V F+ + N+ +E L + ++ S ++ K +V +G ++ R + + + Sbjct: 556 VRFFHDEVNLNIIERLRQHGLQMALSADQQQIASDKLAGKNIVISGVFERHSRDEYKAMI 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 G + +S KT I+ G N G SK++KAQQLG+++++E+ FL +L+Q Sbjct: 616 ESNGGKNVSSISNKTSFILAGANMGPSKMQKAQQLGIEMIDEDTFLNMLEQ 666 >gi|215405001|ref|ZP_03417182.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 02_1987] gi|289746820|ref|ZP_06506198.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 02_1987] gi|289687348|gb|EFD54836.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 02_1987] Length = 691 Score = 547 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 219/723 (30%), Positives = 352/723 (48%), Gaps = 43/723 (5%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P + + ++ +L +E+ H YY PII D+E+D L RR +A+ P+L Sbjct: 4 PDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL-- 61 Query: 68 SEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P+ P +GG V H LSL+ + ++L + RI+ Sbjct: 62 -RTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAH--- 117 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIP 182 + E KIDG +++ Y +G+ A+ RGDG +GEDV+ R I +P L +P Sbjct: 118 -YLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVP 176 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 E++EVRGEV+ +DF ALN ++ G+ P+ANPRN+A+G LR+ +P R L H Sbjct: 177 EVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICH 236 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 GLG ++ +R G PV+ A G+ + R + ++IDG Sbjct: 237 GLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDG 296 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V KVDE +LQ++LG +R+PRW I++K+ ++A T+LLDI + +GRTG +TP A + PV Sbjct: 297 VVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPV 356 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G+ + ATLHN IK + + +GD V++++AG+VIP+V+ +V R Sbjct: 357 KVAGSTVGQATLHNASEIKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVELR 405 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 + F P+ CP C+S + + + A RC C Q ER+ H SR+ Sbjct: 406 DGSEREFIMPTTCPECRSPLAPE-----KEGDADIRCPNARGCPGQLRERVFHVASRNGL 460 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +IE LG + +++ I ++F L R T G + L + Sbjct: 461 DIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVN 516 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 ++K + L R + +L IRHVG AR+LA + S A L V Sbjct: 517 LDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAIAAA----------STDQLAAV 566 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 VG IA A+ E++ + V+ + +++V + +V TG+L Sbjct: 567 EGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGF 626 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R A+E + G + +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F LL Sbjct: 627 SRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLLADG 686 Query: 722 NTT 724 + Sbjct: 687 PAS 689 >gi|329576880|gb|EGG58365.1| DNA ligase [Enterococcus faecalis TX1467] Length = 676 Score = 547 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 238/714 (33%), Positives = 381/714 (53%), Gaps = 53/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L++ A L ++++ + YY +P + D YD L + I FPDL P Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ K H IP SL ++ ED+ F R+ + K + + E Sbjct: 63 DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++RYE G FV A RGDG GE+++ +R + ++P L+ I +EVRGE Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ R LN F++ + + Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+EF+ Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG ++PRW I++KF ++A T + DI+ I TG++TP A + PV + G ++ Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIDCTGVVTPTAVMAPVRVAGTTVSR 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CPIC S +V A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L + ++ AD++ L Q + + + S N+Y +I + S+ Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ IA Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRAT----------AEEIVALDSIGETIAD 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++V +++N + L K V S ++K +V TG L + R + Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + L Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVSVWNEQEMVDALD 672 >gi|78043193|ref|YP_359946.1| DNA ligase, NAD-dependent [Carboxydothermus hydrogenoformans Z-2901] gi|123743192|sp|Q3AD38|DNLJ_CARHZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|77995308|gb|ABB14207.1| DNA ligase, NAD-dependent [Carboxydothermus hydrogenoformans Z-2901] Length = 664 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 243/719 (33%), Positives = 370/719 (51%), Gaps = 69/719 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E +K + L + YH+ YY +P I D+EYD + R ++ +P+ P Sbjct: 1 MDKEAVKKRIEELRALLHYHNYRYYVLDQPEISDAEYDRMLRELISLEQQYPEFI---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GGE+ +V H P SL+ + EDL++F R+ + + +E Sbjct: 58 DSPSQRVGGEVAKEFREVAHLKPMYSLDNAFGPEDLKEFDRRVRSLL---PGQEVEYEVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++ YE G V A RG+G +GED++A ++ I IP L IP ++EVRGE Sbjct: 115 LKIDGLAISLVYENGVLVRGATRGNGTTGEDITANVKTIKAIPLKLRNPIP-LLEVRGEA 173 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+ K F LN++ G +ANPRNAA+G LR+L+P R L+ F++ +G+ Sbjct: 174 YMPKESFARLNEQREERGEPLFANPRNAAAGSLRQLDPKVTAERDLSAFMYAIGEVQGYE 233 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K Q E+++ + LGF VN N +++Y R +LPY IDGLV KV+ + Sbjct: 234 PKTQAELMEWLSELGFKVNPYREVFNNIDDVINYCQSWHEKRFSLPYVIDGLVIKVNSLA 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+ LG A+SPRW I++KF + A TRL DI +++GRTG+LTP A EPV++ G +T Sbjct: 294 QQEALGFTAKSPRWAIAYKFPAEIAETRLKDIIVRVGRTGVLTPTAIFEPVSLAGTTVTR 353 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNEDYI+ +DIR+GD + V++AGE+IP+VV+++ +R + F Sbjct: 354 ASLHNEDYIR-----------EKDIRIGDIIRVQKAGEIIPEVVEVVKEKRTGAEKEFVM 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+CQ + VR AA RCT +C AQ E + HF SR A NIEGLG Sbjct: 403 PDTCPVCQGKAVRLPGE------AAWRCTNA-SCPAQLKEGIVHFASRGAMNIEGLGPAV 455 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + + A I AD++ L ++ + G S NL ++I K + SL Sbjct: 456 AELLLE----AGLIHNYADLYYLSAE------EVARLPRMGKKSAENLINAIEKSKQNSL 505 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER I+ LGIR VG + AR LA ++ ++ +P VG +A Sbjct: 506 ERLIYGLGIRLVGEKAARDLAVHFKELDKLIAAGE----------EEIMAIPSVGPKMAA 555 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +I F+ N+ +E L + E + +E V TGTL R +A++ + Sbjct: 556 SIKAFFAQKENLELIEKLKAAGVNTKYLAEVR-DNRLEGLTFVLTGTLSSFTRKEAEQLI 614 Query: 671 TQLGA-----------VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 LG ++VG++PGSKL KA++LG+ I+ EE+F ++ Sbjct: 615 LSLGGKVSSSVSKKTS-----------YVVVGEDPGSKLTKAKELGIPILTEEEFRQMV 662 >gi|34581289|ref|ZP_00142769.1| DNA ligase [Rickettsia sibirica 246] gi|28262674|gb|EAA26178.1| DNA ligase [Rickettsia sibirica 246] Length = 689 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 272/712 (38%), Positives = 421/712 (59%), Gaps = 29/712 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ +S E+A+K L L +I+ ++ YY P++ DSEYD L + FP L Sbjct: 4 IDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 N P K+G ++ KVTH +P LSL ++ +D+R F+ RI F + + I Sbjct: 64 ---NSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPI-- 118 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 EPKIDG + Y+ G A RGDG+ GED++A I+ I P N+PE +EVR Sbjct: 119 FCEPKIDGLSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPH-KIDNVPEFLEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE+YI K DFL LN E G+ +ANPRNAA+G LR+L+ + R L +FV+ G T Sbjct: 178 GEIYIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTE 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + A Q ++L K++ GF +N + A++ I ++Y +K+ R LPY+IDG+VYK++ Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +F+LQ ++G ARSPR+ +HKF T+LL I +Q+GRTG LTPVA LEP+ IGG Sbjct: 298 DFALQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN I +D+R+ D V ++RAG+VIPK++ + ++R D + Sbjct: 358 VSRATLHNFQEIAR-----------KDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTET 406 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P FC C S++ RC GL C AQ ER++HFVS++A +IEGLG Sbjct: 407 FDTPLFCLSCNSKLHY------TPEDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q++F I P DIF L+ + +S K+EN+ G+G SV NL+ +I K +N Sbjct: 461 RKQVEFLIDK----GLISNPLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +SL RFI++LGIRH+G + A+ LA+ + SY NF ++ + + D + L + +GD Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDK 576 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 I I++F+ NI ++ L + ++ + + SS + +K +VFTG+L + R +A+ Sbjct: 577 ILVDIIDFFDVKENIELIKKLGEILNIEDYKETREQSS-LMDKIVVFTGSLPTMSRAEAK 635 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +LGA V+ +S TD+++VG + GSKL+KA++L +KI++EE++L L++ Sbjct: 636 ATAEKLGAKVAVGVSSNTDLVVVGVDAGSKLKKAKELNIKIIDEEEWLTLIK 687 >gi|157828943|ref|YP_001495185.1| NAD-dependent DNA ligase LigA [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933668|ref|YP_001650457.1| NAD-dependent DNA ligase LigA [Rickettsia rickettsii str. Iowa] gi|166216235|sp|A8GTF2|DNLJ_RICRS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190359278|sp|B0BUZ1|DNLJ_RICRO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157801424|gb|ABV76677.1| NAD-dependent DNA ligase LigA [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908755|gb|ABY73051.1| NAD-dependent DNA ligase [Rickettsia rickettsii str. Iowa] Length = 689 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 271/712 (38%), Positives = 420/712 (58%), Gaps = 29/712 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ +S E+A+K L L +I+ ++ YY P++ DSEYD L + FP L Sbjct: 4 IDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 N P K+G ++ KVTH +P LSL ++ +D+R F+ RI F + + I Sbjct: 64 ---NSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPI-- 118 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 EPKIDG + Y+ G A RGDG+ GED++A I+ I P N+PE +EVR Sbjct: 119 FCEPKIDGVSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPH-KIDNVPEFLEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE+YI K DFL LN E G+ +ANPRNAA+G LR+L+ + R L +FV+ G T Sbjct: 178 GEIYIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTE 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + A Q ++L K++ GF +N + A++ I ++Y +K+ R LPY+IDG+VYK++ Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +F+LQ ++G AR+PR+ +HKF T+LL I +Q+GRTG LTPVA LEP+ IGG Sbjct: 298 DFALQNRMGFIARNPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN I +D+R+ D V ++RAG+VIPK++ + ++R D + Sbjct: 358 VSRATLHNFQEIAR-----------KDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTET 406 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P FC C S++ RC GL C AQ ER++HFVS++A +IEGLG Sbjct: 407 FDTPLFCLSCNSKLHY------TPEDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q++F I P DIF L+ + +S K+EN+ G+G SV NL+ +I K +N Sbjct: 461 RKQVEFLIDK----GLISNPLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +SL RFI++LGIRH+G + A+ LA+ + SY NF ++ + + D + L + +GD Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDK 576 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 I I++F+ NI ++ L + ++ + + SS + +K +VFTG+L I R +A+ Sbjct: 577 ILVDIIDFFDVKENIELIKKLGEILNIEDYKETREQSS-LTDKIVVFTGSLPTISRAEAK 635 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +LGA V+ +S TD+++ G + GSKL+KA++L +KI++EE++L L++ Sbjct: 636 ATAEKLGAKVAVGVSSNTDLVVAGVDAGSKLKKAKELNIKIIDEEEWLTLIK 687 >gi|257454409|ref|ZP_05619671.1| DNA ligase, NAD-dependent [Enhydrobacter aerosaccus SK60] gi|257448175|gb|EEV23156.1| DNA ligase, NAD-dependent [Enhydrobacter aerosaccus SK60] Length = 675 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 254/714 (35%), Positives = 387/714 (54%), Gaps = 43/714 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ ++ L ++ H+ YY P++ DSEYD L++ A+ A+P L +S Sbjct: 3 MNTAAITAQMRKLIAQLKQHNHAYYVLDNPLLEDSEYDQLRQELVALETAYPQLVQS--- 59 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P N++G + +VTH IP LSL ++ +DL+ F+ R+ + + + +E Sbjct: 60 DSPTNQVGDKPLPFFTQVTHQIPMLSLGNLFTFDDLQNFMRRVNDRLA-DNQQNPEYEVE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG +++ Y+ G+F A RGDG +GED++ +R I +P L+++IP +EVRGEV Sbjct: 119 LKLDGLAVSLLYQNGQFTQAVTRGDGQTGEDITQNVRTIRNLPLQLAIDIP-RLEVRGEV 177 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF 250 + K F LN + A G K +ANPRNAA+G LR+L+P F+ + + + Sbjct: 178 LMPKAGFAKLNRDAQAKGEKTFANPRNAAAGSLRQLDPNIAKSRPLAFYAYSVNQGLPAE 237 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q + L ++ LGF + ++ T + +YY + RS LP++IDG V KV+ + Sbjct: 238 ITTQSDALFWLKALGF-SISDIKIVQTAAQLQAYYQAVIEKRSHLPFEIDGTVIKVNSLA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG +R PRW ++KF + TRL I+ Q+GRTG LTPV +LEPVN+GG ++N Sbjct: 297 LQEQLGFLSREPRWATAYKFPAETVMTRLNAIEWQVGRTGQLTPVGKLEPVNVGGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 TLHN I+ L DIR GD V V RAG+VIPKV + +ER +AQ S Sbjct: 357 VTLHNIGEIQRL-----------DIRAGDMVSVHRAGDVIPKVTRVWTDERPANAQVVSL 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V+ A RCTGGL C AQQ E L HFVSR A +I+GLG++ Sbjct: 406 PTHCPVCDSPVIMPEGE------ALARCTGGLFCPAQQQEALIHFVSRKAMDIDGLGERW 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L FF+ ++ ADI+ L + + + N+ G+ SV N+ +I K ++ +L Sbjct: 460 LINFFEQ----GIVKNVADIYALSKHRD----ALINLEKLGEKSVENMLAAIEKSKDTTL 511 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGI VG A +LA + Q +L + P VG+ A Sbjct: 512 PRFIFALGIGGVGESTAMNLAMQFGDLQPLMAA----------SIEALQKTPDVGEKTAD 561 Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +I EF++ NI + LL+ + ++ + V TGTL+ + R +A+ Sbjct: 562 SIFEFFRAEHNIEVINRLLQAGIHWQPVSQVPEGNQPLKGQSWVITGTLESMGRDEAKAK 621 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 + LGA VS +S KT ++ G+ GSKL A++LGVK++ E QF LL Y+ Sbjct: 622 LQALGAKVSGSVSAKTTALLAGEKAGSKLANAEKLGVKVVTEAQFTDLLNTYHA 675 >gi|327475237|gb|AEA77213.1| DNA ligase [Bacillus aquimaris] Length = 668 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 248/715 (34%), Positives = 385/715 (53%), Gaps = 53/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + A K + L ++ ++ Y+ KP + DSEYD L R + FPDL S Sbjct: 1 MDKQSAEKRVKELHDVLNQYNYEYHVLDKPSVPDSEYDQLLRELIELEDQFPDLKTS--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + S KV H P LSL +N EDLR F R+ + + + E Sbjct: 58 DSPSERVGGSILESFEKVEHRTPMLSLGNAFNEEDLRDFDRRVRQSVG----DDFSYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG GED+++ ++ I +IP +S I EVRGE Sbjct: 114 LKIDGLAVSLRYEDGVFVQGATRGDGTIGEDITSNLKTIRSIPLKISEPIS--FEVRGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 ++ K F ALN +P+ANPRNAA+G LR+L+P +R L+ F++ L + Sbjct: 172 FMPKGSFEALNKVKEEKEEEPFANPRNAAAGSLRQLDPKIAASRNLDIFLYALADVGDTG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + E L ++ LGF N R+ T ++ + R LPYDIDG+V KVD Sbjct: 232 IESHSEGLDRLERLGFKTNQERRRCATIEEVIEFVEGWTDKRPNLPYDIDGIVIKVDALQ 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG A+SPRW I+ KF ++ T L DI++ IGRTG+LTP A L+PV + G + Sbjct: 292 QQQQLGTTAKSPRWAIAFKFPAEEVVTVLKDIELSIGRTGVLTPTAILDPVRVAGTTVQR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DI++GD V++K+AG++IP+VV+++ ++R + Q F Sbjct: 352 ASLHNEDLIR-----------EKDIKIGDHVVIKKAGDIIPEVVNVLEDKRTGEEQEFKM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 PTHCPECDSELVRLEGE------VALRCINPK-CPAQIREGLIHFVSRNAMNIDGLGEKV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ + I AD++ L+R Q + G+ SV NL ++I + SL Sbjct: 454 ISQLFREK----LIEDVADLYRLEREQL------LQLERMGEKSVDNLLEAIEASKENSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E+ +F LG+RHVGA+ A++LA+ + S + L + +G+ +A Sbjct: 504 EKLLFGLGVRHVGAKAAKTLAQQFHSMEKLMTVSK----------DELTDINEIGEKMAA 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 AIV ++ N +E L + + K V S K +V TG ++ + R++ Sbjct: 554 AIVAYFDNEEVKELIEELKEAGVNLEYKGPKPVKVSEVDSYFAGKTVVLTGKIEVLSRNE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+KTD++I G++ GSKL KA +L +++ +E++ + L + Sbjct: 614 AKDKIEMLGGKVTGSVSKKTDLVIAGEDAGSKLAKANELNIEVWDEDKLMEELNR 668 >gi|228989472|ref|ZP_04149457.1| DNA ligase [Bacillus pseudomycoides DSM 12442] gi|228770197|gb|EEM18776.1| DNA ligase [Bacillus pseudomycoides DSM 12442] Length = 669 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 247/715 (34%), Positives = 391/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E+A++ + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEEAKQRIEELRDMLNAFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFLIE--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q DD+++ + E Sbjct: 58 DSPTVRVGGAVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDSNVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+FV A RGDG +GED++ ++ I IP L + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFVQGATRGDGVTGEDITQNLKTIKAIPLRLKEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G LR+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEAVFANPRNAAAGSLRQLDPKIAAKRNLSMFVYGLADVKEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IASHSESLNFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPNLNYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQDSLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVIVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S +VR A RC AC AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACDSELVRLEEE------VALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ A IR AD++ L + Q + FG+ S + L +I + SL Sbjct: 455 ITQLFE----ADYIRTFADLYPLTQEQL------LQLERFGEKSASKLVQAIETSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+LA+++ + + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTLAEHFETMDHLVKATE----------EELKEINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 +IV ++ N + ++ + + K N++S K +V TG L+ + R + Sbjct: 555 SIVTYFDNEDVLELLQQFKEYGVNMTYKGIKRADLQNIASYFAGKTIVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + +LG V+ +S+ TD+++ G+ GSKL +A++ +++ NEE+FL L + Sbjct: 615 AKKKIEELGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNIEVWNEERFLQELNK 669 >gi|223986795|ref|ZP_03636777.1| hypothetical protein HOLDEFILI_04100 [Holdemania filiformis DSM 12042] gi|223961228|gb|EEF65758.1| hypothetical protein HOLDEFILI_04100 [Holdemania filiformis DSM 12042] Length = 663 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 229/705 (32%), Positives = 372/705 (52%), Gaps = 47/705 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +L ++++ ++ Y+ P + D+EYD L R + P+L DPN P + Sbjct: 3 EDRILALRRQLNQYNYEYHVLDHPTVSDAEYDQLMRELITLEQQHPELF---DPNSPTQR 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ K+TH P LSL ++N E+L +F + + + + + E KIDG Sbjct: 60 VGGQVLEEFNKITHKRPMLSLGDVFNKEELFEFARK-----AEAEVGPVDYCCECKIDGL 114 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +++ Y+ G+F YA RGDG GEDV+ +R I +IP + +EVRGEVY+ K Sbjct: 115 AMSLNYQGGRFQYAVTRGDGVVGEDVTHNVRTIKSIPME--IEYEGELEVRGEVYMPKAS 172 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYE 256 F LN + G + +ANPRNAA+G +R+L+ L+ + + + ++ E Sbjct: 173 FERLNQKRRENGEEEFANPRNAAAGSIRQLDSKVAASRGLDALWYHVPQGPQLGHHQHSE 232 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LGF +N R + + ++ +RS LPY+IDG+V KV+++ Q+QLG Sbjct: 233 SLDFIHSLGFRINPLNRLCRNIEEVWQFVEDLTLMRSDLPYEIDGIVIKVNDYEKQQQLG 292 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A++P+W I++KF ++A TRL +I + +GRTG +TP A+L PV + G + A LH+E Sbjct: 293 FTAKTPKWAIAYKFPAEEAVTRLENIFVTVGRTGKITPNAQLTPVRLAGTSVGFAQLHDE 352 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ +DIR+GD V+V +AG++IP++V + +R P+ FP CP+ Sbjct: 353 DMIR-----------DKDIRIGDYVIVHKAGDIIPEIVASVPEKRDGLQVPYVFPKVCPV 401 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C +VR + AH C A+ +E + HF SRDA NI+GLG ++++ F Sbjct: 402 CGMPLVRYPDE-------AHHFCINNDCPARVVESIAHFCSRDAMNIDGLGVKRVELFHS 454 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + DI+ L+ +I G S NL ++I + SLE+ ++ Sbjct: 455 Q----GWLNTVEDIYNLKDH----YDEILETPKMGKKSADNLLEAIENSKQNSLEKLLYG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR +G + A+ LA + + Q Q + L + +G I AQ +++F+ Sbjct: 507 LGIRQIGEKAAKILAYRFETMQALMQAT----------YEELEEIKDIGAITAQTVLDFF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + N +EAL+ I E+ V + K +V TGTL + R +AQ + LGA Sbjct: 557 HDEANQHLIEALIGHGLNMICLKEEQVETIFTGKTVVLTGTLATMTRPEAQALLEHLGAT 616 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 VS +S++TD +I G+N GSKL KAQ LGV M E +F+ + ++ Sbjct: 617 VSGSVSKRTDFVIYGENAGSKLTKAQSLGVATMTESEFMEEVNRH 661 >gi|254411541|ref|ZP_05025318.1| DNA ligase, NAD-dependent [Microcoleus chthonoplastes PCC 7420] gi|196182042|gb|EDX77029.1| DNA ligase, NAD-dependent [Microcoleus chthonoplastes PCC 7420] Length = 676 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 230/719 (31%), Positives = 366/719 (50%), Gaps = 55/719 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++ + L + YY P++ D+ YD L R + +P+L P+ Sbjct: 1 MTNVKQRVQELRNLLQQASYAYYVRDNPMMEDAVYDQLYRELQDLESQYPELV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + V H+IP SLE +N+E+L K+ R R+ D ++ + E K Sbjct: 58 PTQRVGEKPASEFSSVRHNIPLYSLENAFNLEELAKWQERWQRY--APDVKNVEYVCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVY 192 IDG+ I + Y+ G V RGDG +GED++ IR I +IP + P I+EVRGE + Sbjct: 116 IDGSAIALTYKDGVLVRGVTRGDGVTGEDITQNIRTIRSIPLRLSTETPPPIVEVRGEAF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT----- 246 + + F +N E A G +ANPRNAA+G LR+L+P + R L+FF + L Sbjct: 176 LPLDVFEGINREREAAGEALFANPRNAAAGTLRQLDPKIVDRRQLDFFAYTLHLPGSEEQ 235 Query: 247 -SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + K Q+E L+ +R LGF VN ++ + + YY S R LPY DG+V K Sbjct: 236 ETVPTLKSQWEALEFLRDLGFRVNPNRKRCASLAEVEEYYQYWDSQRRDLPYMTDGVVVK 295 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 ++ FSLQ+QLG + PRW I+ K+ +++ T + ++ +Q+GRTG LTPVA L+PV + G Sbjct: 296 LNSFSLQEQLGFTQKFPRWAIALKYPAEESPTLVQNVTVQVGRTGALTPVAELKPVQLAG 355 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ ATLHN D I+ L ++ +GD V+V++AGE+IP+VV ++ R P+A Sbjct: 356 TTVSRATLHNRDRIEEL-----------NLHLGDTVIVRKAGEIIPEVVRVLPELRPPEA 404 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 +P P+ CP+C VVR A RC +C A L H+ SR A +I G Sbjct: 405 KPVQMPTDCPVCHQPVVRPPGE------AVTRCINA-SCPAIVKGSLNHWASRGALDING 457 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG++ ++ S + AD++ L Q N+ G+ S L + I + Sbjct: 458 LGEKLVNQLVDS----GLVHSVADLYQLTLDQL------TNLERMGEKSAQKLINQIEQS 507 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R ++ LGIR+VG A+ LA+ + S A + V +G Sbjct: 508 NTQPWSRVLYGLGIRYVGTVNAQILAQQFPSVDQLAAAR----------VTDIESVYGIG 557 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 IAQ++ ++++ P N + L + + S ++ K V TGTL + Sbjct: 558 SEIAQSVNDWFRVPSNQTLINRLREANLQLAGEPKVASAEAKSQPLQGKTFVITGTLPTL 617 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +R A++ + G V++ +S KTD ++VG++ GSKLEKAQ+LG+ ++E L L + Sbjct: 618 KRDDAKKLIQNAGGKVTSSVSSKTDYVLVGEDAGSKLEKAQELGINQISESDLLQWLNE 676 >gi|83312957|ref|YP_423221.1| NAD-dependent DNA ligase [Magnetospirillum magneticum AMB-1] gi|123726860|sp|Q2W0G3|DNLJ_MAGMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|82947798|dbj|BAE52662.1| NAD-dependent DNA ligase [Magnetospirillum magneticum AMB-1] Length = 698 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 290/722 (40%), Positives = 433/722 (59%), Gaps = 39/722 (5%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 +IP+EAL+ +AR E + L + I+ D+ Y+ P + D YD KRR I FP+L Sbjct: 1 MIPVEALTPFEARIEHAELVETIARWDEAYHAKDAPEVPDDVYDGAKRRLARIEGRFPEL 60 Query: 66 ARSEDPNGPLN-KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 A P+ K+G + K+ H++P LSL+ + ED+ +F ++ RF D+ Sbjct: 61 AAK----SPIRDKVGAAPSEGFGKLVHAVPMLSLDNAFAPEDVAEFDAKVRRFLGLGDEA 116 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP--TIPRVLSLNIP 182 + + EPKIDG I +RYE G+FV AA RGDG GEDV+ + P +PR L + P Sbjct: 117 PLAYVAEPKIDGLSINLRYEGGRFVSAATRGDGAEGEDVTRNLETFPATQLPRTLGPDAP 176 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 +IE+RGEVY++K DFLALN A G K +ANPRNAA+G LR+L+P +R L+ F + Sbjct: 177 AVIEIRGEVYMTKADFLALNQRQEAAGEKLFANPRNAAAGSLRQLDPKVTASRPLSLFAY 236 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 +G+ S A +E L++++ GF VN +R+ + G++S Y + R+TL YDIDG Sbjct: 237 AMGEASAPPAASHWEYLERLKAWGFVVNPLIRRCDGVAGLLSAYESLGEARATLAYDIDG 296 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYKVD+ LQ++LG +RSPRW I+HKF +QA+T L IDIQ+GRTG LTPVARL PV Sbjct: 297 IVYKVDDIELQRRLGFVSRSPRWAIAHKFPAEQATTLLEAIDIQVGRTGALTPVARLTPV 356 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 N+GG +++NATLHNED I +D+R+GD V+V+RAG+VIP++V ++ + Sbjct: 357 NVGGVVVSNATLHNEDEIAR-----------KDVRIGDTVIVQRAGDVIPQIVGVVPGKP 405 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 A PF +P CP+C + VR RCTGGL C AQ ERLKHFVSR+AF Sbjct: 406 RG-AVPFVYPETCPVCGAHAVRPEGE------VIRRCTGGLTCEAQAKERLKHFVSRNAF 458 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR-QQTSTTKIENILGFGDVSVTNLYD 540 +IEGLG++ ++F ++ +R PADIF L+ R ++EN G+G S L++ Sbjct: 459 DIEGLGEKNIEFLWEK----GWVRGPADIFRLKARNDAELLQRLENFEGWGKRSTEKLFE 514 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 SI R + LERFIF+LGIR +G A+ LA++Y S+ + + +A + L Sbjct: 515 SIKTRSAMGLERFIFALGIRQIGEATAKRLARHYGSFGAWRAAM---LAGTEEARAELTS 571 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFT 655 + +G +A +++F+ N+ AV+ L+ + + ++ +S + K +VFT Sbjct: 572 IEDIGPSVAGDLLDFFSEEHNVQAVDDLVAAMAALDGAVEDAKVIESSASPVAGKAVVFT 631 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL + R +A+ LGA V +S+KTD ++VG + GSK +A +LG+ ++E+++L Sbjct: 632 GTLVTMTRPEAKARAEALGAKVVGSVSKKTDYVVVGADAGSKAAEAVKLGIATLSEQEWL 691 Query: 716 FL 717 L Sbjct: 692 AL 693 >gi|257065343|ref|YP_003145015.1| DNA ligase, NAD-dependent [Slackia heliotrinireducens DSM 20476] gi|256792996|gb|ACV23666.1| DNA ligase, NAD-dependent [Slackia heliotrinireducens DSM 20476] Length = 708 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 225/719 (31%), Positives = 366/719 (50%), Gaps = 47/719 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 ++ + + +L +EI +H YY P I D+ +D+L R + A P DP Sbjct: 15 TVSDVKARIDALRKEIEHHTYLYYAKDAPEISDAAFDSLMRELRELELANPQYI---DPT 71 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GG + V H++ SL+ +++L +++ R + + F E Sbjct: 72 SPTQRVGGYVGEQFSPVRHAVRMYSLDNAMGLDELDEWLARTLEAIG----HPVQFCCEL 127 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-------II 185 KIDG+ I + YE G AA RGDG +GEDV+ +R + IP L + I Sbjct: 128 KIDGSSIALTYEAGVLTKAATRGDGTTGEDVTVNMRTVRDIPLRLRDDGMAGLRDSDASI 187 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLG 244 EVRGEVY+ K+ F LN A G++ +ANPRNAA+G LR+ +P L F++ + Sbjct: 188 EVRGEVYMPKSSFEKLNAAAEATGKQGFANPRNAAAGSLRQKDPKITQNRDLATFLYAIA 247 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + I A+ Q ++L+ +R GF VN V+ +T + + ++ R +LPY IDG+V Sbjct: 248 DDAPIRAESQNDLLEWLRDCGFHVNPDVKLCDTPQEVHDFCEQVAEKRDSLPYGIDGVVV 307 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++F+ Q+ +G AR+PRW I++KF ++ +T + DI +Q+GRTG TPVA L+PV + Sbjct: 308 KVNDFATQRDMGFTARAPRWAIAYKFPPEEKTTVMHDITVQVGRTGACTPVAELDPVLVD 367 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G+ + ATLHN D ++ +D+R+GD V+V++AG+VIP+++ +++ R Sbjct: 368 GSTVARATLHNLDEVRR-----------KDVRIGDTVIVRKAGDVIPEILGPVLSLRPEG 416 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+P+ P+ CP C S +VR+ AA RC + C AQ +ERL H+ SR A +I+ Sbjct: 417 AKPWEMPATCPSCGSPLVREEGE------AAFRCVS-IDCPAQAMERLIHWASRGAMDID 469 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPA-DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 G+G + + +S + L + K + G L S+ Sbjct: 470 GMGDEIVARLVESGRVLDVADYYNLTEYDLATLETGRINKEGEPIHLGGTIAAKLMASLE 529 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 ++ + R +F LGIRHVG ++A Y S + L +V Sbjct: 530 ASKSRTFARVLFGLGIRHVGKTTGEAIAAAYPSMEKLMNATE----------EGLAQVDG 579 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTL--QK 660 +G +IA++IV F N + L + E ++ + V TG+L Sbjct: 580 IGAVIAKSIVTFLATEDNREVIHRLERAGVTMADEVKESDIPQTLAGITFVLTGSLTESG 639 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R +A + + +GA VS +S+KT ++ G+ GSK +KA QLGV ++ E +FL LL+ Sbjct: 640 MTRTEAGDRLKAMGAKVSGSVSKKTGYVVAGEAAGSKYDKAVQLGVPVLTEAEFLRLLE 698 >gi|269127766|ref|YP_003301136.1| DNA ligase, NAD-dependent [Thermomonospora curvata DSM 43183] gi|268312724|gb|ACY99098.1| DNA ligase, NAD-dependent [Thermomonospora curvata DSM 43183] Length = 722 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 223/736 (30%), Positives = 351/736 (47%), Gaps = 62/736 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + +A + + L +EI + YY +P + D+EYD L R + P+L P+ Sbjct: 7 TPTEAARRHAELSREIDEANYRYYVLDRPTLSDAEYDRLMRELRELEERHPELV---TPD 63 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++G + V H LSL+ E+L + R+ + ++ + E Sbjct: 64 SPTQRVGAPIVTDFATVQHLERMLSLDNAMTGEELAAWGERVLKEVGEQA----SYLCEL 119 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEV 191 KIDG + + Y G+ V A RGDG +GEDV+ IR I +P LS P ++EVRGEV Sbjct: 120 KIDGLAVALVYRDGRLVRGATRGDGRTGEDVTNNIRTIDVVPDRLSGEGWPSLLEVRGEV 179 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSEI 249 +++ F +N M+ GR+P+ANPRNAA+G LR+ +P R L+ VHG G Sbjct: 180 FLTVASFEQINAAMVDAGREPFANPRNAAAGSLRQKDPRITARRPLSMLVHGFGAWEGRE 239 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + Q E + MR G PV++ + G+ Y R PY+IDG+V KVD+ Sbjct: 240 LPRSQSEAYELMRSWGLPVSDLYKVVPDLEGVREYVAHYGEHRHDPPYEIDGVVVKVDQL 299 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+++G +R+PRW I+ K+ ++ +T+LLDI + +GRTG +TP +EPV + G+ + Sbjct: 300 ALQRRMGSTSRAPRWAIAFKYPPEEVNTKLLDIKVGVGRTGRITPYGVMEPVKVAGSTVA 359 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN + + + +GD V++++AG+VIP++V + R +PF Sbjct: 360 YATLHNAGEVAR-----------KGVLIGDTVVLRKAGDVIPEIVKPVTELRDGSERPFH 408 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C +R+ + + A RC C Q ERL SR+A +IE LG Sbjct: 409 MPETCPECGTRLAYE-----KEGDADIRCPNARYCPGQLRERLFFAASRNALDIEALGYV 463 Query: 490 QLDFFFKSEDPA-FSIRIPADIFTLQRRQ------------------------QTSTTKI 524 + +P+ +R D+F L+ Q Q + Sbjct: 464 AATALTQPLEPSDPPVRNEGDLFHLKVEQLLPIRTVVRDPRTGLPKIDPKTGEQKVVSFF 523 Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 G +V L+ + K + L R + +L IRHVG AR+LA+ + S + Sbjct: 524 ATKDGRPKKTVEVLFAELEKAKTRPLWRVLVALSIRHVGPTAARALAREFGSIDAIMKAS 583 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 L V VG IA +I ++ + +E + Sbjct: 584 E----------EELAAVDGVGPAIAASIKRWFAEDWHREIIEKWRAAGVRMADE-GADGP 632 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 + +V TGTL+ R A E V G V+ +S+KT+ ++VGDNPGSK +KA +L Sbjct: 633 RPLSGVAVVITGTLEHYSRDSATEAVLSRGGRVTGSVSKKTNFVVVGDNPGSKYDKAVKL 692 Query: 705 GVKIMNEEQFLFLLQQ 720 GV +++E+ F LL+Q Sbjct: 693 GVPVLDEDGFRVLLEQ 708 >gi|159036755|ref|YP_001536008.1| DNA ligase, NAD-dependent [Salinispora arenicola CNS-205] gi|190359280|sp|A8M5E3|DNLJ_SALAI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157915590|gb|ABV97017.1| DNA ligase, NAD-dependent [Salinispora arenicola CNS-205] Length = 710 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 227/709 (32%), Positives = 351/709 (49%), Gaps = 43/709 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 AR+ ++L E++ H YY P I D+E+D R A+ FP L P+ P Sbjct: 25 ARERHATLSLELTEHQYRYYVLDAPTISDAEFDERLRELAALEAEFPAL---RTPDSPTQ 81 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + V H+ +SL+ + E+L + R+ R + + E K+DG Sbjct: 82 RVGGAFSTDFTPVAHAERMMSLDNAFTDEELDAWAERVER----DAGGPVPYLCELKVDG 137 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-----LSLNIPEIIEVRGEV 191 I + YE+G+ V AA RGDG +GEDV+A +R+I +P IP ++EVRGE+ Sbjct: 138 LAINLTYERGRLVRAATRGDGRTGEDVTANVRSIRDVPAELAPSAEFPEIPGLLEVRGEI 197 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y F LN ++ G+ P+ANPRNAA+G LR+ +P +R L VHG+G Sbjct: 198 YFPIAGFADLNAGLVEQGKAPFANPRNAAAGSLRQKDPRITASRPLRLVVHGIGARQGWQ 257 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q E +R G P ++ R G+ Y + R + ++IDG+V KVD S Sbjct: 258 PSTQSESYAALRAWGLPTSDRWRVVPDLAGVAEYIAHYATHRHDVEHEIDGVVVKVDPVS 317 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q +LG +R+PRW I+ K+ ++ +TRLLDID+ +GRTG +TP A LEPV + G+ + Sbjct: 318 IQGRLGSTSRAPRWAIAFKYPPEEVNTRLLDIDVNVGRTGRVTPFAVLEPVRVAGSTVAL 377 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN ++ + + +GD V++++AG+VIP+V+ +V R PDA+ F Sbjct: 378 ATLHNAREVRR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVELRPPDARSFVM 426 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP C + + + RC +C AQ ER+ H R AF+IE LG + Sbjct: 427 PSTCPCCGTPLA-----PAKEGDVDIRCPNTRSCPAQLRERVFHLAGRGAFDIEVLGYKG 481 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ I D+F L Q T + N G + L D++ + L Sbjct: 482 AAALLDAQ----IITDEGDLFALDAAQLTRSPFFVNKDGSLGSNAVKLLDNLTVAKEREL 537 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R + +L IRHVG A++LA+++ S + Q L V VG IA Sbjct: 538 WRVLVALSIRHVGPTAAQALARHFRSIEAIDQAGE----------EELSAVDGVGPTIAA 587 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ E++ + V + +E +V TGTL R +A E + Sbjct: 588 SVREWFAVAWHREVVRKWAEAGVRMTEEAVDEGPRPLEGMTVVVTGTLAGFSRDQAAEAI 647 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G V+ +S+KT ++VG+NPG+K +KA L V +++EE F LL Sbjct: 648 QSRGGKVTGSVSKKTAFVVVGENPGTKADKAASLKVPVLDEEGFRVLLD 696 >gi|221639033|ref|YP_002525295.1| DNA ligase [Rhodobacter sphaeroides KD131] gi|254781405|sp|B9KRK2|DNLJ_RHOSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|221159814|gb|ACM00794.1| DNA ligase [Rhodobacter sphaeroides KD131] Length = 704 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 302/714 (42%), Positives = 438/714 (61%), Gaps = 17/714 (2%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P++ L+ +A EL+ L + I + Y+ + P I D++YDAL+ R AI FP+L R Sbjct: 6 PVDQLTEAEAAAELARLAEAIEAANTAYHTHDAPQISDADYDALRLRNRAIEEQFPELRR 65 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 S + P +++GG + KV H + LSLE +++ ++ +I RI R+ D + Sbjct: 66 S---DSPSDRVGGALAEGFAKVRHEVRMLSLENAFDLAEVEDWIERIRRYLGHVGD--LL 120 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 FT EPKIDG +++RYEKG+ V AA RGDG +GE+V+ R I +P L P+++EV Sbjct: 121 FTAEPKIDGLSLSLRYEKGRLVQAATRGDGETGENVTENARTIADLPTELDGA-PDLLEV 179 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY+S DF ALN A G++ +ANPRNAA+G LR+L+P +R L FF + G Sbjct: 180 RGEVYMSHEDFAALNGRQEAAGQRLFANPRNAAAGSLRQLDPAVTASRPLRFFAYAWGAH 239 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE A Q+E + ++ LGF N R +++ + E++ R+ L YDIDG+VYKV Sbjct: 240 SEPLAATQHEAIARLAALGFTTNPLTRLCTGPEELLAQHAEIERQRAALGYDIDGVVYKV 299 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ +LQ++LG RA +PRW I+HKFA + A T+L ID+Q+GRTG L+PVARL+PV +GG Sbjct: 300 DDLALQRRLGFRASTPRWAIAHKFAAQLAWTQLEGIDVQVGRTGALSPVARLKPVTVGGV 359 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ NATLHNEDYI G D+ G+ +RGG+DIRVGD V V RAG+VIPKV D+ ++ R A Sbjct: 360 VVANATLHNEDYIAGRDSKGQEIRGGKDIRVGDWVQVYRAGDVIPKVADVDLDRRPEGAA 419 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP CP C S +R+ + RCTGGL C AQQ+ERLKHFVSR AF+IEGL Sbjct: 420 PYRFPETCPECGSEAIREPG------DSVRRCTGGLICPAQQVERLKHFVSRAAFDIEGL 473 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q++ ++ IR PADIF L R + ++EN G+G S NL+ +I RR Sbjct: 474 GAKQVEALWRD----GWIRQPADIFELPNRYREGIQRLENREGWGRKSAENLFAAIEARR 529 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 I+L R IF+LGIRHVG A LA +Y S+ F + +W L+ + VG Sbjct: 530 RIALHRLIFALGIRHVGETTATLLATHYGSWAAFEAAMTRAEVGAGPEWQDLLSIDGVGA 589 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++A ++V + AVEAL ++ V+S + + +VFTGTL+K+ R +A Sbjct: 590 VLATSLVTAFHQEAERAAVEALAAHLTVEDAEVRAPVASPVAGRIVVFTGTLEKMSRAEA 649 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA VS +S +TD+++ G GSK ++A LG++ ++E+ +L L+ Sbjct: 650 KARAEALGAKVSGSVSARTDLVVAGPGAGSKAKQAAALGIETIDEDGWLRLIGD 703 >gi|329897281|ref|ZP_08272019.1| DNA ligase [gamma proteobacterium IMCC3088] gi|328921277|gb|EGG28673.1| DNA ligase [gamma proteobacterium IMCC3088] Length = 674 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 250/707 (35%), Positives = 380/707 (53%), Gaps = 44/707 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 K ++ L I + YY++ P I D+EYD L R + P AR + Sbjct: 2 PADPAKRIAELIALIERYSQEYYEHDAPSISDAEYDQLFRELQTLEVQNPQYARR---DS 58 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG+ V H IP LSL+ ++ ++L F R + +I + EPK Sbjct: 59 PTQRVGGKPVEGFAPVMHVIPMLSLDNAFSNDELLDFDRRARERLGLLETATIDYVCEPK 118 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-EIIEVRGEVY 192 +DG + IRYE+G V AA RGDG +GED++ ++ + IP L + +EVRGE++ Sbjct: 119 LDGIAVAIRYERGMLVQAATRGDGQTGEDITHNVKTVKNIPLQLHGAESIDALEVRGEIF 178 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIF 250 + K F LN A G K +ANPRNAA+G LR+L+P R L F+ +G+G T Sbjct: 179 MPKRGFTRLNQRAEAQGEKTFANPRNAAAGSLRQLDPAITAKRPLAFYCYGVGVTQGVDI 238 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 QY +L+ LG PVN+ V+ + + YY ++ RS L YDIDG+VYKV+ + Sbjct: 239 PDSQYGLLRWYESLGLPVNDEVQAVSGIQACIDYYEQLSRRRSGLDYDIDGIVYKVNSLA 298 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q LG +R+PRW I+ KF ++A T LLD++ Q+GRTG +TPVARLEPV++GG +++N Sbjct: 299 EQADLGFVSRAPRWAIARKFPAEEALTHLLDVEFQVGRTGAITPVARLEPVSVGGVVVSN 358 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L +++GD V+V+RAG+VIP+V + ER + + F Sbjct: 359 ATLHNADEIDRLQ-----------VKIGDLVVVRRAGDVIPQVARALPEERRGELRKIVF 407 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C S +VR+ A RC+G L CSAQ+ + HFVSR A +IEG G++ Sbjct: 408 PSHCPVCGSAIVREEGE------AVQRCSGALTCSAQRKGAIIHFVSRKAMDIEGFGEKL 461 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E ++ P+DI+ L + ++ + G S NL D+I++ + + Sbjct: 462 VEQLVDIER----LKDPSDIYGL------TFNELAALPRMGAKSAQNLIDAIDRSKRTTF 511 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ ++ L+ VP VG I+A Sbjct: 512 ARFLYALGIREVGVTTAERLADYFGDIESLIAA----------SVDDLLAVPDVGPIVAN 561 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEY 669 I F + ++ + L++ +V + + + V TG L+ R +A E Sbjct: 562 HIRSFLNSSTHLEVISTLVQAGLSWPEVAPIDVDNAPLVGQTWVVTGKLETFSREEATEL 621 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + LGA V+ +S KT +++ G GSKL KAQ LGV+++NE++FL Sbjct: 622 LKSLGASVAGSVSNKTTVLLAGPGAGSKLAKAQALGVEVINEDEFLA 668 >gi|308377195|ref|ZP_07441467.2| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu008] gi|13882885|gb|AAK47423.1| DNA ligase [Mycobacterium tuberculosis CDC1551] gi|308348655|gb|EFP37506.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu008] Length = 679 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 218/712 (30%), Positives = 348/712 (48%), Gaps = 43/712 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++ +L +E+ H YY PII D+E+D L RR +A+ P+L P+ P + Sbjct: 3 RQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL---RTPDSPTQLV 59 Query: 79 GGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 GG V H LSL+ + ++L + RI+ + E KIDG Sbjct: 60 GGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAH----YLCELKIDGV 115 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYI 193 +++ Y +G+ A+ RGDG +GEDV+ R I +P L +PE++EVRGEV+ Sbjct: 116 ALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLEVRGEVFF 175 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 +DF ALN ++ G+ P+ANPRN+A+G LR+ +P R L HGLG Sbjct: 176 RLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPA 235 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 ++ +R G PV+ A G+ + R + ++IDG+V KVDE +LQ Sbjct: 236 TLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQ 295 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG +R+PRW I++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ + AT Sbjct: 296 RRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQAT 355 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN IK + + +GD V++++AG+VIP+V+ +V R + F P+ Sbjct: 356 LHNASEIKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPT 404 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S + + + A RC C Q ER+ H SR+ +IE LG + Sbjct: 405 TCPECGSPLAPE-----KEGDADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYEAGV 459 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 +++ I ++F L R T G + L +++K + L R Sbjct: 460 ALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWR 515 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 + +L IRHVG AR+LA + S A L V VG IA A+ Sbjct: 516 VLVALSIRHVGPTAARALATEFGSLDAIAAA----------STDQLAAVEGVGPTIAAAV 565 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 E++ + V+ + +++V + +V TG+L R A+E + Sbjct: 566 TEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVA 625 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 G + +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F LL + Sbjct: 626 RGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLLADGPAS 677 >gi|218439827|ref|YP_002378156.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7424] gi|254781306|sp|B7K8U0|DNLJ_CYAP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218172555|gb|ACK71288.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7424] Length = 678 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 231/712 (32%), Positives = 371/712 (52%), Gaps = 51/712 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++ + L ++ YY PI+ D YD L R I +P+L P+ P Sbjct: 7 EIKQRVDQLRSQLQKASYAYYVLDNPIMEDVVYDQLYRELQNIETQYPELI---TPDSPT 63 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G +++ V H+IP SLE +N+++ ++ R R D + E KID Sbjct: 64 QRVGDKLSEQFISVNHNIPLYSLENAFNLQEFARWQERWQRL--TPDVTQFEYVCELKID 121 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVYIS 194 G+ I + YE G V RGDG GE+++ I+ I +IP L+L+ P + IEVRGE ++ Sbjct: 122 GSAIALTYENGLLVRGVTRGDGIVGEEITPNIKTIRSIPLKLALDNPPVRIEVRGEAFLP 181 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEI-FAK 252 +F +N E G +ANPRNAA+G LR+L+P + R FF + L Sbjct: 182 IEEFERINQEKQTAGESLFANPRNAAAGTLRQLDPRIVDRRRLQFFAYTLYVIDSPSTPT 241 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q+E L+ ++ +GF VN + + + YY + R LPY DG+V K++++ LQ Sbjct: 242 TQWESLEDLQQMGFLVNPNRKLCQSEAEVDQYYQLWDTERHNLPYMTDGVVVKLNDYQLQ 301 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +QLG + PRW I+ K+ ++A T++ +I + +GRTG +TP+A +EPV + G + AT Sbjct: 302 QQLGFTQKFPRWAIALKYPAEEAPTQVKNITVNVGRTGAVTPMAIMEPVQLAGTTVQKAT 361 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D + L DIRVGD V++++AGE+IP+VV +I R P+ QP+ P+ Sbjct: 362 LHNSDRVAQL-----------DIRVGDTVIIRKAGEIIPEVVRVIEELRPPNTQPYQMPT 410 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S +VR A RC +C A L H+ SRDA +I GLG++ + Sbjct: 411 QCPECHSTLVRPKGE------AVTRCVNS-SCPAILRGSLVHWCSRDALDIRGLGEKVVI 463 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + + AD++ L+ Q S + G S NL ++INK + R Sbjct: 464 LLIDN----GLVHSIADLYHLKVEQIAS------LERMGTKSANNLINAINKSKQQPWSR 513 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 ++ LGIR+VG+ A+ L+ + S + +Q + SL V +G IAQ++ Sbjct: 514 VLYGLGIRYVGSVTAKLLSDNFKSVEQLSQA----------SFTSLESVYGIGAEIAQSV 563 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKN-----VSSEIENKKLVFTGTLQKIQRHKAQ 667 ++++ N ++ L + E S+ + K +V TGTL ++R++AQ Sbjct: 564 YDWFKIEANQTLIKNLQQAELQFETLSETPKYPPISSTPLAGKTVVITGTLPSLKRNEAQ 623 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 E + + G V+ +S KTD ++VG++ GSKL KAQQLG+ ++EEQ L ++ Sbjct: 624 ELIEKAGGKVTNSVSSKTDYLLVGEDAGSKLTKAQQLGISQLSEEQLLKMIN 675 >gi|254468809|ref|ZP_05082215.1| DNA ligase, NAD-dependent [beta proteobacterium KB13] gi|207087619|gb|EDZ64902.1| DNA ligase, NAD-dependent [beta proteobacterium KB13] Length = 669 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 256/713 (35%), Positives = 399/713 (55%), Gaps = 48/713 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + K++S L+ I HD CYY P I D EYD+L R I + P+L P Sbjct: 1 MT-QDIIKKISYLKSVIQEHDHCYYVLDDPQISDHEYDSLLRELKNIEDSNPELI---TP 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG ++ H+ P LSL + I +L F RI D N + F E Sbjct: 57 DSPTQRVGGSPISEFNQIQHNKPMLSLGNAFGINELEAFNKRINDTL---DVNDVEFNAE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGE 190 K DG +TI YE G YAA RGDG+ GEDV+ I+ I TIP L + EVRGE Sbjct: 114 LKFDGLAVTILYENGLMKYAATRGDGNVGEDVTHNIKTIKTIPLKLYGDNHPRTFEVRGE 173 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE- 248 V + KNDF LN+ I++G+K +ANPRNAA+G LR+L+P R L F+ + LG+ + Sbjct: 174 VLMDKNDFKELNEYQISLGQKTFANPRNAAAGSLRQLDPKITAKRKLKFYAYSLGQVDQD 233 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + ++L+ + G P+++ ++ + + +Y ++ R+ LP+DIDG+VYKV+ Sbjct: 234 LELTNHTDILKYIHNSGIPISSYSQRVVGINQMQHFYEDILKKRNDLPFDIDGIVYKVNS 293 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q+ LG +++PRW I++KF ++A T + DI++Q+GRTG++TPVARL+PV + G + Sbjct: 294 IKNQENLGYVSKAPRWAIAYKFPAEEAETVVNDINVQVGRTGVITPVARLQPVFVSGVTV 353 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 TNATLHNED + +DIR+GD V+V+RAG+V+P++V +I +R +A+ F Sbjct: 354 TNATLHNEDEM-----------LRKDIRIGDSVIVRRAGDVVPEIVRVIKEKRPSNAKVF 402 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P +CPIC S+V+R AA RCTG L C AQ + + H+VSR A NIEGLG Sbjct: 403 EMPQYCPICNSQVIRIDGE------AAQRCTGQLKCEAQAKQAISHYVSRKAMNIEGLGA 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + +D FF+ I+ +DI+ L + GFG+ S NL ++I + Sbjct: 457 KIIDHFFEK----GLIKNISDIYHLDYEEIQKM------EGFGERSAENLKEAIESSKKT 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L +FI++LGIR+VG ++ + K + N + + + VG ++ Sbjct: 507 TLAKFIYALGIRNVGEATSKDIVKKLGTLDNVMKA----------SIDDFLEINDVGPVV 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 AQ++ +F+Q N + +++ + ++ + V TGTL+ R + + Sbjct: 557 AQSLHQFFQEDENKAIINNIVEFGVKWEDQAQNVSNDQKLNQQTFVVTGTLENFSRDEIK 616 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 E + G VS +S+KT +I+GDNPGSK +KA +LGVK++NE+Q + LL + Sbjct: 617 ELIENNGGKVSGSVSKKTSYVIIGDNPGSKADKAAELGVKVINEKQLMELLNE 669 >gi|228995667|ref|ZP_04155330.1| DNA ligase [Bacillus mycoides Rock3-17] gi|228764044|gb|EEM12928.1| DNA ligase [Bacillus mycoides Rock3-17] Length = 669 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 248/715 (34%), Positives = 391/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E+A++ + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEEAKQRIEELRDMLNAFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFLIE--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q DD+++ + E Sbjct: 58 DSPTVRVGGAVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDSNVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+FV A RGDG +GED++ ++ I IP L + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFVQGATRGDGVTGEDITQNLKTIKAIPLRLKEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LNDE G +ANPRNAA+G LR+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNDEKEQNGEAVFANPRNAAAGSLRQLDPKIAAKRNLSMFVYGLADVKEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IASHSESLNFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPNLNYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQDSLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVIVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S +VR A RC AC AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACDSELVRLEEE------VALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ A IR AD++ L + Q + FG+ S + L +I + SL Sbjct: 455 ITQLFE----ADYIRTFADLYPLTQEQL------LQLERFGEKSASKLVQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+LA+++ + + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTLAEHFETMDHLVKATE----------EELKEINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 +IV ++ N + ++ + + K N++S K +V TG L+ + R + Sbjct: 555 SIVTYFDNEDVLELLQQFKEYGVNMTYKGIKRADLQNIASYFAGKTIVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + +LG V+ +S+ TD+++ G+ GSKL +A++ +++ NEE+FL L + Sbjct: 615 AKKKIEELGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNIEVWNEERFLQELNK 669 >gi|215412865|ref|ZP_03421575.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 94_M4241A] gi|298526485|ref|ZP_07013894.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis 94_M4241A] gi|298496279|gb|EFI31573.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis 94_M4241A] Length = 691 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 219/723 (30%), Positives = 353/723 (48%), Gaps = 43/723 (5%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P + + ++ +L +E+ H YY PII D+E+D L RR +A+ P+L Sbjct: 4 PDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL-- 61 Query: 68 SEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P+ P +GG V H LSL+ + ++L + RI+ Sbjct: 62 -RTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAH--- 117 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIP 182 + E KIDG +++ Y +G+ A+ RGDG +GEDV+ R I +P L +P Sbjct: 118 -YLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVP 176 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 E++EVRGEV+ +DF ALN ++ G+ P+ANPRN+A+G LR+ +P R L H Sbjct: 177 EVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICH 236 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 GLG ++ +R G PV+ A G+ + R + ++IDG Sbjct: 237 GLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDG 296 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V KVDE +LQ++LG +R+PRW I++K+ ++A T+LLDI + +GRTG +TP A + PV Sbjct: 297 VVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPV 356 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G+ + ATLHN IK + + +GD V++++AG+VIP+V+ +V R Sbjct: 357 KVAGSTVGQATLHNASEIKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVELR 405 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 + F P+ CP C S + + + A RC C Q ER+ H SR+ Sbjct: 406 DGSEREFIMPTTCPECGSPLAPE-----KEGDADIRCPNARGCPGQLRERVFHVASRNGL 460 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +IE LG + +++ I ++F L R T G + L + Sbjct: 461 DIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVN 516 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 ++K + L R + +L IRHVG AR+LA + S A + +A V Sbjct: 517 LDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAIAAASTDQVA----------AV 566 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 VG IA A+ E++ + V+ + +++V + +V TG+L Sbjct: 567 EGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGF 626 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R A+E + G + +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F LL Sbjct: 627 SRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLLADG 686 Query: 722 NTT 724 + Sbjct: 687 PAS 689 >gi|293609092|ref|ZP_06691395.1| DNA ligase [Acinetobacter sp. SH024] gi|292829665|gb|EFF88027.1| DNA ligase [Acinetobacter sp. SH024] Length = 679 Score = 545 bits (1404), Expect = e-152, Method: Composition-based stats. Identities = 260/720 (36%), Positives = 380/720 (52%), Gaps = 47/720 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ +++ L Q I+ H+ YY +P I DSEYD L + A+ +PDL +S Sbjct: 1 MATTSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDLVQS--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+GG+ VTH +P LSL ++N EDL F R+ + I + +E Sbjct: 58 DSPTTKVGGQALSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVEERL---PNQKIQYEVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188 K+DG I++ YE G + RGDG +GED++ I+ I +P+VL + EI +EVR Sbjct: 115 LKLDGLAISLWYENGVLIRGVTRGDGETGEDITQNIKTIRNLPKVLHSDHFEIPRLLEVR 174 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247 GEV + K+ F LN E A G K +ANPRNAA+G LR+L+P F+ +G+ + Sbjct: 175 GEVLMPKSGFEKLNAEQEAKGDKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 234 Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ LQ + LGF + N+ + Y +++ RS L +IDG+V KV Sbjct: 235 PNHGLTTMHDSLQWLIKLGFEIAERQYLCNSIQEVQQRYEQIQQERSDLQVEIDGMVVKV 294 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q+QLG +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGV 354 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++N TLHN I L D+RVGD V V R G+VIPKV + R DA+ Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWPEFRPVDAE 403 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C S VV A RC+GGL C+AQ++E ++HFVSR A +IEGL Sbjct: 404 VVHLPENCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKALDIEGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ ++ ADI+ L ++ + I G+ SV NL D+I + Sbjct: 458 GDRWVESLLH----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASK 509 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI++LGIR VG AR LA + + + D +L + P VGD Sbjct: 510 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA----------DVEALKKTPDVGD 559 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I A+ I +F+ P NI ++ L+ + + V TGTL+++ R +A Sbjct: 560 ITAEWIADFFLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 + + LGA VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y TL Sbjct: 619 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIAVMNETDFLSLMASYGQTLS 678 >gi|315122567|ref|YP_004063056.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495969|gb|ADR52568.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 739 Score = 545 bits (1404), Expect = e-152, Method: Composition-based stats. Identities = 483/726 (66%), Positives = 580/726 (79%), Gaps = 5/726 (0%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M R+ IPIE LS EQA+KELS L+ EISYHDD YYQ+S+P ILD EYD LK RCDAIA Sbjct: 1 MANRKFIPIEELSPEQAKKELSFLQHEISYHDDLYYQHSQPKILDFEYDQLKERCDAIAR 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 AFP+ A D NGPLNKIGGE N SLFK+THS P SLEK IED+ F+T+IYR +K Sbjct: 61 AFPEFASLADSNGPLNKIGGEKNFSLFKITHSPPMRSLEKSHQIEDINYFMTKIYRDLKK 120 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 NSI FTLEPKIDG ++IRYE+GKFV+A LRGDG+ GEDVSA I + IP+VLS Sbjct: 121 DCYNSIVFTLEPKIDGASLSIRYEQGKFVHAGLRGDGYIGEDVSANISMMSIIPQVLSFK 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP---TDITRYLN 237 +PEI EVRGE+YISK DF LN+EM +K Y+NPRN +G+LR N + I+RYL Sbjct: 181 VPEIFEVRGEIYISKKDFFVLNEEMRTTKKKLYSNPRNTVAGLLRSRNQTSKSRISRYLK 240 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 FFVHG+G SE FA GQYEMLQKMR LGFPVN ++QA+T GIVSYY+E IRS+LPY Sbjct: 241 FFVHGIGTISEKFADGQYEMLQKMRALGFPVNERIQQAHTLEGIVSYYDETALIRSSLPY 300 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+VYKVD F+LQ+QLGER+RSP W ISHKF++++ ST LL IDIQIGRTG+LTP+AR Sbjct: 301 DIDGIVYKVDSFTLQQQLGERSRSPIWAISHKFSDEEFSTPLLGIDIQIGRTGMLTPIAR 360 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 E +N+GG ++NATLHNE+YIKGLD+SGK++RGGRDIR+GD +LVKRAG+VIPKV D+I Sbjct: 361 FESINMGGVFVSNATLHNENYIKGLDSSGKIIRGGRDIRIGDMILVKRAGDVIPKVTDVI 420 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 + ER D+Q FSFPS CP+CQS+VVR +NPKTGKL ++H CTGGL C AQQLE LK+FVS Sbjct: 421 MEERPIDSQMFSFPSSCPVCQSKVVRAVNPKTGKLGSSHYCTGGLMCPAQQLEYLKYFVS 480 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 RDAFNIEGLG++QLDFFFKSEDP+FSIRIPADIFTLQ RQQTS K+ENI GF VSVTN Sbjct: 481 RDAFNIEGLGEKQLDFFFKSEDPSFSIRIPADIFTLQHRQQTSFKKLENIPGFAHVSVTN 540 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 LYDSINKRRNISL+RFIFSLGI HVG EIARSLA++Y SYQNF EI NI+ ND +S Sbjct: 541 LYDSINKRRNISLQRFIFSLGIHHVGIEIARSLAQFYRSYQNFETEIKNILDKKNDADVS 600 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFT 655 L +V LVGD++AQ+I+ FYQNP N A+ ALL E +S + + + +S + NK+LVFT Sbjct: 601 LKKVALVGDMVAQSIIAFYQNPENNRAIAALLNEISLSVWDSQEDNSRNSILANKRLVFT 660 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTLQKI RH+AQE V QLGA+VS+ +S KT I++VGDN GSKL KA+QLG++I+NEEQFL Sbjct: 661 GTLQKITRHQAQEAVKQLGAIVSSTISHKTHIVVVGDNAGSKLNKARQLGIEIVNEEQFL 720 Query: 716 FLLQQY 721 L+ + Sbjct: 721 SLISEQ 726 >gi|227498670|ref|ZP_03928814.1| DNA ligase [Acidaminococcus sp. D21] gi|226904126|gb|EEH90044.1| DNA ligase [Acidaminococcus sp. D21] Length = 674 Score = 545 bits (1404), Expect = e-152, Method: Composition-based stats. Identities = 253/718 (35%), Positives = 385/718 (53%), Gaps = 53/718 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ ++A + +L +E+ + YY P I D+EYD+L R+ AI +P+L P Sbjct: 1 MTKQEALLKAQALRKELERNSYLYYVEDMPTITDAEYDSLMRQLRAIEAEYPELV---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +GG +V H P LSL ++ E++++F R++ K D + + +E Sbjct: 58 DSPTQHVGGYAKPGFTEVHHITPLLSLANAFSPEEMKEFDRRVHEGLPK--DAKVEYVVE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEV 187 PKIDG +I YE G+FV AA RGDG GE+V+ +R I IP+VLS IPE+++V Sbjct: 116 PKIDGLACSIIYENGRFVRAATRGDGMVGENVTENVRTIKNIPKVLSSLPGVPIPELLDV 175 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY+ ++ FL LN+E + G +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 RGEVYMPRHAFLKLNEERVERGETEFANPRNAAAGSLRQLDPRVTARRSLAFFAYGIGTG 235 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + + + ++ GF G + T + R +L YD DG+V KV Sbjct: 236 A---LDTHNDSMDRLEAYGFTTTEGRTKVATIEEANALIARHGERRKSLGYDTDGVVVKV 292 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + Q LG + PRW +++KF +QA T L DI IQ+GRTG+LTP A L+PV + G+ Sbjct: 293 NAVWQQNILGATGKDPRWAMAYKFPPEQAETTLRDIVIQVGRTGVLTPTAVLDPVKLSGS 352 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 I+ ATLHNED+I +DIR+GDRV++ +A E+IP+V+ + V +R + + Sbjct: 353 TISRATLHNEDFI-----------AEKDIRIGDRVIINKAAEIIPEVLRVAVEKRTGEEK 401 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F P+ CP C VVR AA RCT C A E L HF SRDA NI+G Sbjct: 402 VFHMPAECPECGWPVVRKNGE------AAVRCTNP-HCPALGREGLIHFTSRDAMNIDGC 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G L + ++ P+D++ + + G S NL +I + Sbjct: 455 GPAVLLQLQERN----LVKDPSDLYLVTADDLM------ELDRMGAKSANNLVRAIAASK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 SL++ +F+LGIRHVGA++AR+LA Y + + L ++P +G Sbjct: 505 ENSLDKLLFALGIRHVGAKVARTLAMKYQTMDALMEATQ----------EELAQIPDIGP 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 +IA+++V ++ +P N +E L + +G N + K +VFTGTL + R Sbjct: 555 VIAESVVTYFGDPGNQDYIERLKELGLNMKMLGTAASNENHPFYGKTMVFTGTLPTLDRA 614 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 AQ ++GA V++ +S+KTD ++ G +PGSK KAQ LGV I++E F LL+ + Sbjct: 615 TAQTMAQEVGAKVTSSVSKKTDYVVAGADPGSKYTKAQSLGVTILDEAAFRRLLENKD 672 >gi|303258051|ref|ZP_07344059.1| DNA ligase, NAD-dependent [Burkholderiales bacterium 1_1_47] gi|331000674|ref|ZP_08324326.1| DNA ligase [Parasutterella excrementihominis YIT 11859] gi|302859070|gb|EFL82153.1| DNA ligase, NAD-dependent [Burkholderiales bacterium 1_1_47] gi|329570827|gb|EGG52542.1| DNA ligase [Parasutterella excrementihominis YIT 11859] Length = 684 Score = 545 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 382/711 (53%), Gaps = 45/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E + + L +E+ H+ YY + P + D YD+L + + +P P Sbjct: 9 LEAVKLRMEKLAEELEKHNKAYYIDNAPTVSDEIYDSLFQELARLEKEYPQFK---SPVS 65 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P ++G + L KVTH++P LS+ E + + F R+ R + D +I + E Sbjct: 66 PTERVGATVQSELKKVTHAVPMLSIHTETDYTAQGAYDFDARVRRELELTPDQTIDYDCE 125 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG I +RYE G V AA RGDG++GEDV+A ++ I T+P + P+I EVRGEV Sbjct: 126 LKFDGLAINLRYEDGVLVQAATRGDGYTGEDVTANVKTIKTLPLKVDG-FPKIFEVRGEV 184 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 + K F LN+E AVG K +ANPRNAA+G LR+L+ R LNF+ +G G+ SE+ Sbjct: 185 IMHKEVFRKLNEEQEAVGAKLFANPRNAAAGSLRQLDSALTAKRNLNFYAYGYGEVSEMP 244 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A Q +L ++ GFPV + T + +++ E+ IR LP+DIDG+VYKV+ F+ Sbjct: 245 ADTQSGLLDYLKSKGFPVISNRIVVQTPEQLEAFHLEVARIRHDLPFDIDGVVYKVNSFA 304 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 QKQLG +R PRW ++HK+ ++ T++LDI +Q+GRTG LTPVARL+PV +GG I+N Sbjct: 305 RQKQLGFVSREPRWAVAHKYPPEEVQTQVLDITVQVGRTGKLTPVARLKPVFVGGTTISN 364 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 +LHNE++++ + I++GD V+V RAG+VIP++V +I R DA+ F Sbjct: 365 VSLHNEEFLQNM-----------GIKIGDTVVVHRAGDVIPEIVRVIPELRPKDARDFVM 413 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P FCP+C S ++ K C+GGL C AQ+ + + HFVSR A I+G+G++ Sbjct: 414 PEFCPVCGSHAYKEDGEKD------RHCSGGLFCRAQRAQSILHFVSRKAMGIDGIGEKL 467 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + + + + ADI+ L + + G S L SI + +L Sbjct: 468 AEQLIEHD----LVTTVADIYRLTVDKLVG------LDRMGQKSAEKLVASIEASKKTTL 517 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ERF++++ I VG AR+LA ++ + + + L V +G A+ Sbjct: 518 ERFLYAISIPEVGEATARNLASHFGALKPLEEA----------SLEQLQEVEDIGPSGAE 567 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEY 669 I+ F+ P NI + L+ + + V TGTL + R +A + Sbjct: 568 NILHFFAEPANIAVINDLMDRGVVWEEGTGTSGQELPLNGLTFVLTGTLPTLSRDEASDI 627 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + G VS +S+KT ++ G++ GSKL KA+ LGV I++E + ++ Q Sbjct: 628 IRKAGGKVSGSVSKKTSYVLAGESAGSKLAKAEALGVNIIDEPELFKMINQ 678 >gi|312127350|ref|YP_003992224.1| DNA ligase, nad-dependent [Caldicellulosiruptor hydrothermalis 108] gi|311777369|gb|ADQ06855.1| DNA ligase, NAD-dependent [Caldicellulosiruptor hydrothermalis 108] Length = 673 Score = 545 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 237/703 (33%), Positives = 380/703 (54%), Gaps = 47/703 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 +K + L I+YHD YY P I D EYD L R + +P+ P+ P Sbjct: 5 IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQ 61 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ +V H +P LSL ++N +L F R+ ++ + +E KIDG Sbjct: 62 RVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLG---TSNFDYVVEYKIDG 118 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + + YE G FV A RGDG+ GEDV+ ++ I +IP L +I I VRGEV++ K+ Sbjct: 119 LSVALEYENGLFVRGATRGDGNIGEDVTENLKTIRSIPLKLKEDIS--IVVRGEVFMPKD 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 +F+ LN E +ANPRNAA+G LR+L+P + + E + + Sbjct: 177 EFIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNVQWCEKELETHAQ 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ ++ LGF V+ +++ R LP++IDG V K+++ L+ G Sbjct: 237 ALEFLKHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 E A+SPRW +++KF ++ T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN Sbjct: 297 ETAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI+ +DIR+GD V+V++A E+IP+VV+++ ++R + F P CP+ Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + V++ + A+RCTG C A+ + HFVSRDA +I G+G+ + F+ Sbjct: 406 CGADVIKFEDE------VAYRCTGV-ECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFE 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ PADI+ L+ + + FG S NL +I +N L+R I++ Sbjct: 459 R----GLIKTPADIYYLKFEDLVN------LERFGVKSTNNLLKAIQASKNRPLDRLIYA 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRH+G + A++LA++ S + L+ +P G+ +A+++V F+ Sbjct: 509 LGIRHIGQKAAKTLAEHISSIDDLFTITE----------EQLLSLPDFGEKMAKSVVTFF 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + +E L ++ + ++ V TGTL K R++A+E + LGA Sbjct: 559 RQDQTRHLIERLKAAGVNTVSEKKAKSD-ILKGYTFVLTGTLSKYSRNEAKEILESLGAK 617 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V+ +S+KT ++VG +PGSK KAQQLG+KI+NEE F L++ Sbjct: 618 VTESVSKKTTAVVVGQDPGSKFTKAQQLGIKILNEEDFEKLVK 660 >gi|229083590|ref|ZP_04215919.1| DNA ligase [Bacillus cereus Rock3-44] gi|228699722|gb|EEL52378.1| DNA ligase [Bacillus cereus Rock3-44] Length = 669 Score = 545 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 244/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E+A++ + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEKAKQRIEELRDMLNACNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFL---TE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q D ++ + E Sbjct: 58 DSPTVRVGGAVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDSANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+FV A RGDG +GED++ ++ I IP L + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFVQGATRGDGVTGEDITQNLKTIKAIPLRLKEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEAVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLADVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IVSHSDSLNFLGELGFKTNPNRRTCETIEDVITYVEEWQEKRPDLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV+++ ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVLFDKRTGEEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S +VR A RC AC AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPTCDSELVRLEEE------VALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ A IR AD++ L + Q + FG+ S + L +I + SL Sbjct: 455 ITQLFE----ADYIRTFADLYPLTQEQL------LQLERFGEKSASKLVQAIEASKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+LA+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTLAEHFETMDLLVKATE----------EELKEINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 +IV ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SIVTYFDNEDVLELLQQFKEYGVNMTYKGIKRADLQNVESYFAGKTIVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + +LG V+ +S+ TD+++ G+ GSKL +A++ +++ NEE+FL L + Sbjct: 615 AKKKIEELGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNIEVWNEERFLQELNK 669 >gi|326796428|ref|YP_004314248.1| DNA ligase [Marinomonas mediterranea MMB-1] gi|326547192|gb|ADZ92412.1| DNA ligase [Marinomonas mediterranea MMB-1] Length = 680 Score = 545 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 246/708 (34%), Positives = 382/708 (53%), Gaps = 45/708 (6%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + +L +++ + Y+ P + DSEYD L + I P + P+ P ++G Sbjct: 12 VKTLVSQLNDYSYSYHVKDDPKVPDSEYDRLYKALQLIELKNPQWIQ---PDSPTQRVGE 68 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + + V H++ LSL+ ++ + + +F R+ + + D I F EPK+DG I+ Sbjct: 69 KPDTGFANVEHTVAMLSLDNAFDDDSMLEFNERVKKLLNESAD--IEFCCEPKLDGLAIS 126 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKNDFL 199 +RYE G V RGDG SGED+++ IR I T+P + P ++EVRGE+Y+ K F Sbjct: 127 LRYEDGVLVRGVTRGDGLSGEDITSNIRTIHTVPLKLRTDTPPPVVEVRGEIYMPKEGFE 186 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIFAKGQYEM 257 LN K + NPRNAA+G LR+L+P +R L + +G + + Y+ Sbjct: 187 VLNALAKQKDEKLFVNPRNAAAGSLRQLDPKITASRPLVLCAYSIGFSEGWTQPQSHYDG 246 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ GF +N+ + + G +SYY ++ R L YDIDG+VYKVD + Q++LG Sbjct: 247 LIQLGDWGFKINDRMERVTGIQGCLSYYEKLNQDRPALTYDIDGIVYKVDSIAKQQELGF 306 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 AR+PRW I+ KF ++ T++ ID Q+GRTG +TPVARLEPV +GG ++NATLHN+D Sbjct: 307 IARAPRWAIARKFPAQEEITQIKGIDFQVGRTGAITPVARLEPVFVGGVTVSNATLHNKD 366 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I L +RV D V+++RAG+VIP+VV +++ +R +P CP+C Sbjct: 367 EIARL-----------GVRVNDWVIIRRAGDVIPQVVQVVLEKRPEGTVSVEYPDSCPVC 415 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S + A RC GGL C+AQ E LKHFVSR A +I+GLG + ++ + Sbjct: 416 GSHTEQVEGE------AVIRCAGGLVCNAQLKESLKHFVSRKAMDIDGLGDKLIEQLVDN 469 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + ++ PADI+ L ++ ++ ++ GD SV L SI+ +N RFI++L Sbjct: 470 K----LVQTPADIYKLHEKEA----RLLDLERMGDKSVDKLLTSIDASKNTLFNRFIYAL 521 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR VG A++L K+Y + Q D SLI+V VG I+AQ + F++ Sbjct: 522 GIREVGEATAKALTKHYKALDALIQA----------DQESLIQVSDVGPIVAQHVQRFFE 571 Query: 618 NPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 +NI + L++ E + K V TGTL + R + +E + QLGA Sbjct: 572 QEQNIVVINELIELGIQWDAPAEAAGESEQPLLGKTYVVTGTLNEFTREEIKEKLQQLGA 631 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 VS +S KTD ++ G+ GSKL KAQ L V +++E+ + L++ Sbjct: 632 KVSGSVSGKTDCLVAGEKAGSKLAKAQSLNVPVLDEQGIIAFLKEQGA 679 >gi|332977611|gb|EGK14379.1| NAD-dependent DNA ligase LigA [Psychrobacter sp. 1501(2011)] Length = 695 Score = 545 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 256/726 (35%), Positives = 391/726 (53%), Gaps = 47/726 (6%) Query: 2 KKRQLIPIEALSIEQ--ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59 + ++ I++L+ EQ ++ +L E+ H++ YY +P I D+EYD L+ + Sbjct: 10 QTTKMNAIKSLNQEQQDIVAKMRTLITEVRKHNNAYYVMDEPTISDNEYDQLRLSLIELE 69 Query: 60 HAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119 +PDL +S + P +G S +V H IP LSL ++N E+L +F+ R+ Sbjct: 70 ERYPDLTQS---DSPTASVGDNPLPSFSQVQHDIPMLSLGNVFNKEELAEFMRRVNDRLS 126 Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179 + N + +E K+DG ++++Y+ G+FV RGDG +GED++ ++ I IP VL Sbjct: 127 SNNKNP-AYEMELKLDGLAVSLKYQNGRFVRGVTRGDGQTGEDITQNVKTINNIPLVLEA 185 Query: 180 NIP-EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLN 237 E++EVRGEV + K F LN E V K +ANPRNAA+G LR+L+P R L Sbjct: 186 AFDIEVLEVRGEVLMPKAGFERLNREAKQVDGKIFANPRNAAAGSLRQLDPAVAANRPLA 245 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 F+ + + + Q E L ++ +GF + V+ N +YY + RS LP+ Sbjct: 246 FYAYSVNQGLPEHIVNQSEALDWLKEIGF-TVSAVKVVNDLEEAQAYYESVIEERSGLPF 304 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 +IDG V KVD LQ +LG +R PRW ++KF + T+L I+ Q+GRTG +TPV + Sbjct: 305 EIDGTVIKVDNLQLQSELGYLSREPRWATAYKFPAETVMTKLNAIEWQVGRTGQITPVGK 364 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 LEPV +GG ++N TLHN I+ L D+R GD V V RAG+VIPKV + Sbjct: 365 LEPVQVGGVTVSNVTLHNIGEIQRL-----------DVRAGDTVSVHRAGDVIPKVTRVW 413 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 R D+QP + P+ CP+C S VV A RCTG L C AQQ E L HFVS Sbjct: 414 HELRPEDSQPVTLPTHCPVCDSPVVLPEGE------ALARCTGELFCPAQQQEALIHFVS 467 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R A +I+GLG++ L FF+ ++ ADI+ L++ ++ + N G+ SV N Sbjct: 468 RKAMDIDGLGERWLISFFEQ----GIVKTVADIYHLEQHRE----ALINFEKLGEKSVNN 519 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L +I + +L RFI+++GI+ VG A++LAK++ S Sbjct: 520 LLAAIENSKKTTLSRFIYAIGIKGVGETTAQNLAKHFGDLPALMDA----------SIES 569 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTG 656 L VP +G I A+ I +F++ N+ +EAL++ + ++ + V TG Sbjct: 570 LEAVPDIGTITAEQIYDFFRAKHNVEVIEALIEAGVHWEKVEQVVAEGLPLDGETWVITG 629 Query: 657 TL--QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TL + R A+ + LGA VS +S KT ++ G+ GSKL KAQQLGV+++ E +F Sbjct: 630 TLVESGMSRDDAKSKLQALGAKVSGSVSAKTSALLAGEKAGSKLTKAQQLGVRVVEEAEF 689 Query: 715 LFLLQQ 720 L ++Q+ Sbjct: 690 LQMIQE 695 >gi|260426307|ref|ZP_05780286.1| DNA ligase, NAD-dependent [Citreicella sp. SE45] gi|260420799|gb|EEX14050.1| DNA ligase, NAD-dependent [Citreicella sp. SE45] Length = 754 Score = 545 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 305/758 (40%), Positives = 441/758 (58%), Gaps = 60/758 (7%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +EAL+ QAR EL+ L + ++ + Y+ P I D++YDALK R AI FP+L Sbjct: 9 IEVEALTETQARDELARLAEVLAQANRAYHTEDAPEISDADYDALKLRNIAIEERFPELK 68 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R + P ++G + KV HS +SL + +++ F I R+ DD + Sbjct: 69 RE---DSPSEQVGAPLAEGFAKVRHSQRMMSLANAFADDEVTDFDRGIRRYLGLADDARL 125 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 FT EPKIDG +++RYE G+ V AA RGDG GE+V+A R I IP L PE++E Sbjct: 126 PFTAEPKIDGLSLSLRYENGELVQAATRGDGAVGENVTANARTIDDIPATLEGA-PEVLE 184 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY+S DF ALN+ A G K +ANPRNAA+G LR+L+ R L FF + G+ Sbjct: 185 VRGEVYMSHEDFAALNERQEARGGKRFANPRNAAAGSLRQLDAAITRERPLRFFAYAWGE 244 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 SE A Q ++++ LGF N R + ++++Y ++++ R+TL YDIDG+VYK Sbjct: 245 VSEPLATTQMGAIERLEALGFQTNPLTRLCDGPQEMLAHYAQIEAQRATLGYDIDGVVYK 304 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ +LQ++LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV +GG Sbjct: 305 VDDLALQQRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGG 364 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHNEDYI G DASG +R G+DIRVGD V V RAG+VIPKV D+ +++R +A Sbjct: 365 VVVSNATLHNEDYIAGRDASGNPIRDGKDIRVGDWVQVYRAGDVIPKVADVDLDKRPEEA 424 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 +P++FP CP C S +R+ A RCTGGL C AQ +E+LKHFVSR AF+IEG Sbjct: 425 EPYAFPQTCPECGSEAIREEG------DAVRRCTGGLVCPAQAVEKLKHFVSRAAFDIEG 478 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG +Q++ F + I PA+IFTL+ R + +++N G+G+ S NL+D+I++R Sbjct: 479 LGAKQVEQFHRD----GWISEPAEIFTLRTRYGSGIQQLKNREGWGEKSAQNLFDAIDER 534 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN------------- 592 R I L R IFSLGIRHVG +A LA++Y S+ + ++ Sbjct: 535 RTIGLGRVIFSLGIRHVGEVVANDLARHYASWDKLIEAVDAARPAAERYRQAETAVEAER 594 Query: 593 -------------------------------DDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 W L+ + +G +A ++V Sbjct: 595 KTAAAEGRRARLKETRDAAWEAEPPVSAGARAAWEDLVGIDGIGQTVAVSLVTSLGQTTE 654 Query: 622 ICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680 +V+ L+ E+ + S + K +VFTG L+K+ R +A+ LGA VS Sbjct: 655 RASVDRLIAELRTIEAPERPLTDGSPVAGKTVVFTGALEKMTRAEAKARAEALGAKVSGS 714 Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +S+KTDI++ G GSK KA++LG+++M+E+ +L L+ Sbjct: 715 VSKKTDIVVAGPGAGSKEAKARELGIELMDEDAWLALI 752 >gi|229003296|ref|ZP_04161126.1| DNA ligase [Bacillus mycoides Rock1-4] gi|228757914|gb|EEM07129.1| DNA ligase [Bacillus mycoides Rock1-4] Length = 669 Score = 545 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 248/715 (34%), Positives = 391/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E+A++ + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEEAKQRIEELRDMLNAFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFLIE--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q DD+++ + E Sbjct: 58 DSPTVRVGGAVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDSNVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+FV A RGDG +GED++ ++ I IP L + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFVQGATRGDGVTGEDITQNLKTIKAIPLRLKEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LNDE G +ANPRNAA+G LR+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNDEKEQNGEAVFANPRNAAAGSLRQLDPKIAAKRNLSMFVYGLADVKEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IASHSESLNFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPNLNYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQDSLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVIVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S +VR A RC AC AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACDSELVRLEEE------VALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ A IR AD++ L + Q + FG+ S + L +I + SL Sbjct: 455 ITQLFE----ADYIRTFADLYPLTQEQL------LQLERFGEKSASKLVQAIETSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+LA+++ + + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTLAEHFETMDHLVKATE----------EELKEINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 +IV ++ N + ++ + + K N++S K +V TG L+ + R + Sbjct: 555 SIVTYFDNEDVLELLQQFKEYGVNMTYKGIKRADLQNIASYFAGKTIVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + +LG V+ +S+ TD+++ G+ GSKL +A++ +++ NEE+FL L + Sbjct: 615 AKKKIEELGGKVAGSVSKSTDLVVAGEAAGSKLAQAEKHNIEVWNEERFLQELNK 669 >gi|154248881|ref|YP_001409706.1| DNA ligase, NAD-dependent [Fervidobacterium nodosum Rt17-B1] gi|190359256|sp|A7HJG6|DNLJ_FERNB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|154152817|gb|ABS60049.1| DNA ligase, NAD-dependent [Fervidobacterium nodosum Rt17-B1] Length = 681 Score = 545 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 236/716 (32%), Positives = 382/716 (53%), Gaps = 49/716 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E+ ++E+ L +EI YH+ YY ++P+I D EYD L +R + +P+L P Sbjct: 1 MVSEKIKQEVEKLRKEIEYHNYRYYVLAQPVISDEEYDKLMKRLMELEEKYPELK---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ V HS P LSL+ +N ++R F RI + + + + E Sbjct: 58 DSPTQRVGGQLIEGFETVEHSEPMLSLDNTYNENEIRNFHERIRKVVR-----DVQYVAE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I +RYE G V A RGDG G+DV+A ++ + +IP L + IEVRGE+ Sbjct: 113 LKIDGVSIALRYENGLLVRAITRGDGLRGDDVTANVKTVKSIPLRLPEPL--TIEVRGEI 170 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 ++ F N + G P+ANPRNA +G L L+P+ R L+ F++ + K + Sbjct: 171 FMPVQYFEEFNRQREEEGLLPFANPRNATAGTLHLLDPSQVAQRKLDSFMYYIVKPQQYD 230 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K Q++ L+ + L F VN + ++ ++ Y+ E R L Y IDG+V KV++F Sbjct: 231 LKTQWDALKFLEKLHFKVNPHSKLLSSIEEVIDYWKEWTEKRKKLEYWIDGVVVKVNDFE 290 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q +LG A+SPRW I+ KF +Q T++L+I Q+GRTG +TPVA EPV + G+++ Sbjct: 291 QQNELGWTAKSPRWAIAFKFPAQQVRTKVLNITFQVGRTGTITPVAEFEPVELEGSIVKR 350 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN DYIK DIRVGD V +++AG +IP++ ++ R D Sbjct: 351 ASLHNFDYIK-----------ENDIRVGDYVFIEKAGGIIPQISYVLKELRDGDEIETVP 399 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C V ++ A++C C A+ ++ FVSR A +I+GLG + Sbjct: 400 PEKCPECGGPVGKESGE-----YVAYKCLNP-HCPAKLKRHIEVFVSRQAMDIQGLGPKI 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + A ++ AD++ L + + I G G ++N+ I K + + Sbjct: 454 ISKIVD----AGLVKDIADLYYL------NIFDLAQISGLGPKMISNILSEIEKSKQNPI 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E+ + LGI VG +IA+ LAK Y S + ++ D L + +G+ IA+ Sbjct: 504 EKLLVGLGIPGVGEKIAKVLAKKYKSMEELSKA----------DIKELSEIEGIGEDIAK 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 IVE++ +P+ +E L K ++ E S+ ++ TGTL+ R + + ++ Sbjct: 554 NIVEYFNSPKTKEILEKLRKAGV-NLESAETTTSNILDGLTFCVTGTLENFSREEIKRFI 612 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 LG + L++KTD ++VG NPGSKLEKA++ GVK++NE++FL +L++ L+ Sbjct: 613 ESLGGHFTDNLTKKTDYLLVGTNPGSKLEKAKKFGVKVLNEQEFLEMLEKKGVELK 668 >gi|226941791|ref|YP_002796865.1| DnlJ [Laribacter hongkongensis HLHK9] gi|254781355|sp|C1D4R5|DNLJ_LARHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|226716718|gb|ACO75856.1| DnlJ [Laribacter hongkongensis HLHK9] Length = 692 Score = 545 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 245/724 (33%), Positives = 379/724 (52%), Gaps = 67/724 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + L + ++ YY P + D+EYD L R +A+ A P+LA Sbjct: 1 MTDLNPTARAAGLRALLHRYNHEYYVLDAPSVPDAEYDRLFRELEALEAAHPELA---SA 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI----------EDLRKFITRIYRFWQKK 121 + P ++GG + VTH +P LSL +++ +L F R+ Sbjct: 58 DSPTRRVGGAPLAAFASVTHRLPMLSLNNVFSDMQDSDPAGRHAELAAFDQRVRDGLGL- 116 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 + + + +EPK DG +++ YE G V A RGDG +GE+V+ +R + +IP L Sbjct: 117 --DEVEYAVEPKFDGLAVSLVYEHGVLVQGATRGDGETGENVTENLRTVRSIPLRLENAP 174 Query: 182 ----------PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PT 230 P +EVRGEV + K DF LN E A G K +ANPRNAA+G LR+L+ Sbjct: 175 GDDLFAPAVVPARLEVRGEVLMLKRDFERLNSEQDAAGLKRFANPRNAAAGSLRQLDSRI 234 Query: 231 DITRYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK 289 +R L FF + + + + + + LG PV+ G+ Y M Sbjct: 235 TASRRLTFFAYAVAEADGVSLPATHSATMDWLAGLGLPVSRQRSVVRGLAGLTGAYEAML 294 Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349 + R+ LP+DIDG+VYKV+ S Q +LG +R+PR+ ++HKF ++A T + DI +Q+GRT Sbjct: 295 AQRAGLPFDIDGVVYKVNRLSEQARLGFVSRAPRFAVAHKFPAEEALTVVEDITVQVGRT 354 Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409 G +TPVARL+PV +GG +TNATLHNED ++ +D+ VGD V+V+RAG+V Sbjct: 355 GAITPVARLQPVFVGGVTVTNATLHNEDEVRR-----------KDVHVGDTVIVRRAGDV 403 Query: 410 IPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 IP+VV ++ R P A+ F P CP+C S +VR+ + A RC+GGL CSAQ Sbjct: 404 IPEVVSVLAERRPPQARAFEMPLVCPVCGSHIVREADE------AVARCSGGLYCSAQHK 457 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529 + L+HF SR A ++EGLG++ +D A + PAD+F L + + + Sbjct: 458 QALQHFASRKALDVEGLGEKLVDQLVD----AGLVHTPADLFALDQ------PALARLER 507 Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 GD S NL +++ R+ +L RF+++LGIR+VG AR LA+++ + Sbjct: 508 MGDKSAENLVRALDACRHTTLARFVYALGIRNVGEATARDLARHFGTLDALMAA------ 561 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--I 647 D L+ P VG I+A++IV+F+ N V+ALL + + Sbjct: 562 ----DQDMLMTAPDVGPIVARSIVDFFAEAHNREVVDALLAAGVSWPVVETVTSAGVAGV 617 Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 K V TGTL + R A+ + G V+ +S+KT ++ G+ GSKL+KA +LG+ Sbjct: 618 SGKTFVLTGTLPTLGRDDAKARIEAAGGKVTGSVSKKTHYVVAGEAAGSKLDKAHELGIT 677 Query: 708 IMNE 711 +++E Sbjct: 678 VLDE 681 >gi|262379150|ref|ZP_06072306.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SH164] gi|262298607|gb|EEY86520.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SH164] Length = 682 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 252/718 (35%), Positives = 382/718 (53%), Gaps = 47/718 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S ++ L Q I+ H+ YY +P I D+EYD+L + A+ +PDL +++ Sbjct: 7 STAGIVTQMRQLIQLIAQHNHAYYVMDQPSISDNEYDSLFHQLKALEEQYPDLVQNDT-- 64 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GG+ V H++P LSL ++N EDL F R+ + + +E Sbjct: 65 -PTRRVGGQALSKFMSVRHAVPMLSLGNVFNKEDLFAFARRVEERL---PGQQVKYEVEL 120 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI---PEIIEVRG 189 K+DG I++ YE G+ V RGDG +GED++ ++ I +P+ L + P+++EVRG Sbjct: 121 KLDGLAISLWYENGELVRGVTRGDGETGEDITQNVKTIRNLPKYLYSDQAAIPKLLEVRG 180 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSE 248 EV I K FL LN E A G K +ANPRNAA+G LR+L+P F+ +G+ + Sbjct: 181 EVLIPKTGFLKLNAENEAKGEKIFANPRNAAAGSLRQLDPGIAAARPLAFYAYGIAQCEP 240 Query: 249 IFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E L +R LGF + ++ + Y ++ R+ L +IDG+V KVD Sbjct: 241 EHHLNSMTESLHWLRDLGFEIAERQFLCDSIEEVQRRYEKIMEERADLGVEIDGMVVKVD 300 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 QKQLG +R PRW ++KF A T + +ID Q+GRTGILTPVARL PV +GG Sbjct: 301 SLKQQKQLGFLSREPRWATAYKFPAIAALTTVENIDWQVGRTGILTPVARLNPVFVGGVT 360 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++N TLHN I L D+R+GD V V R G+VIPKV + R A+ Sbjct: 361 VSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPDTAEV 409 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + P CP+C S VV A RC+G L C+AQ++E ++HFVSR A +IEGLG Sbjct: 410 INLPETCPVCASPVVMPEGE------ALARCSGELYCAAQRIESIRHFVSRKAMDIEGLG 463 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ E ++ +DI+ L + + + I G+ SV NL ++I + + Sbjct: 464 DRWVESLLHLE----LLKDVSDIYHLHQHRN----TLLGIEKMGEKSVQNLINAIEQSKK 515 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L RFI++LGIR VG AR LA + + + Q D SL +VP VGDI Sbjct: 516 TTLARFIYALGIRGVGETTARMLANSFQTLEALQQA----------DVDSLKKVPDVGDI 565 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 A+ I +F++ N+ ++ LL + + + V TGTL+ + R +A Sbjct: 566 TAEWIYDFFRAEHNLEVIDRLLAAG-IHWDAPIASTRQPLNGESWVLTGTLEHLTREQAT 624 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 + + LGA VS +S KT ++ G+ GSKLEKAQ+L ++ +NE+QF+ L++ Y + Sbjct: 625 QMLQALGARVSGSVSAKTKCVVAGEKAGSKLEKAQKLNIQTLNEKQFIELMETYGQVI 682 >gi|255318624|ref|ZP_05359855.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SK82] gi|255304306|gb|EET83492.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SK82] Length = 678 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 252/718 (35%), Positives = 382/718 (53%), Gaps = 47/718 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S ++ L Q I+ H+ YY +P I D+EYD+L + A+ +PDL +++ Sbjct: 3 STAGIVTQMRQLIQLIAQHNHAYYVMDQPSISDNEYDSLFHQLKALEEQYPDLVQNDT-- 60 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GG+ V H++P LSL ++N EDL F R+ + + +E Sbjct: 61 -PTRRVGGQALSKFMSVRHAVPMLSLGNVFNKEDLFAFARRVEERL---PGQQVKYEVEL 116 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI---PEIIEVRG 189 K+DG I++ YE G+ V RGDG +GED++ ++ I +P+ L + P+++EVRG Sbjct: 117 KLDGLAISLWYENGELVRGVTRGDGETGEDITQNVKTIRNLPKYLYSDQAAIPKLLEVRG 176 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSE 248 EV I K FL LN E A G K +ANPRNAA+G LR+L+P F+ +G+ + Sbjct: 177 EVLIPKTGFLKLNAENEAKGEKIFANPRNAAAGSLRQLDPGIAAARPLAFYAYGIAQCEP 236 Query: 249 IFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E L +R LGF + ++ + Y ++ R+ L +IDG+V KVD Sbjct: 237 EHHLNSMTESLHWLRDLGFEIAERQFLCDSIEEVQRRYEKIMEERADLGVEIDGMVVKVD 296 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 QKQLG +R PRW ++KF A T + +ID Q+GRTGILTPVARL PV +GG Sbjct: 297 SLKQQKQLGFLSREPRWATAYKFPAIAALTTVENIDWQVGRTGILTPVARLNPVFVGGVT 356 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++N TLHN I L D+R+GD V V R G+VIPKV + R A+ Sbjct: 357 VSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPDTAEV 405 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + P CP+C S VV A RC+G L C+AQ++E ++HFVSR A +IEGLG Sbjct: 406 INLPETCPVCASPVVMPEGE------ALARCSGELYCAAQRIESIRHFVSRKAMDIEGLG 459 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ E ++ +DI+ L + + + I G+ SV NL ++I + + Sbjct: 460 DRWVESLLHLE----LLKDVSDIYHLHQHRN----TLLGIEKMGEKSVQNLINAIEQSKK 511 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L RFI++LGIR VG AR LA + + + Q D SL +VP VGDI Sbjct: 512 TTLARFIYALGIRGVGETTARMLANSFQTLEALQQA----------DVDSLKKVPDVGDI 561 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 A+ I +F++ N+ ++ LL + + + V TGTL+ + R +A Sbjct: 562 TAEWIYDFFRAEHNLEVIDRLLAAG-IHWDAPIASTRQPLNGESWVLTGTLEHLTREQAT 620 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 + + LGA VS +S KT ++ G+ GSKLEKAQ+L ++ +NE+QF+ L++ Y + Sbjct: 621 QMLQALGARVSGSVSAKTKCVVAGEKAGSKLEKAQKLNIQTLNEKQFIELMETYGQVI 678 >gi|327399096|ref|YP_004339965.1| DNA ligase [Hippea maritima DSM 10411] gi|327181725|gb|AEA33906.1| DNA ligase [Hippea maritima DSM 10411] Length = 667 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 247/712 (34%), Positives = 400/712 (56%), Gaps = 50/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ +A++ + L +++ YH+ YY PII DSEYD + + + ++P D Sbjct: 1 MNDREAKERIEQLRKKLHYHNYRYYVLDDPIISDSEYDMMLKELKELEESYPQF---YDE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++GG KV H IP LSLE ++ D+R+F ++ RF + +D I +++E Sbjct: 58 NSPTVRVGGAPLNKFEKVEHKIPMLSLEDGFDDNDIREFDRKVKRFLKLPEDKKIAYSVE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII-EVRGE 190 PK DG I + YE GK A+ RGDG+ GE+V+ I+ I +P VL ++ P + +V+GE Sbjct: 118 PKFDGLSIDLIYENGKLTVASTRGDGYVGENVTQNIKTIRNVPLVLPIDTPPMYLDVQGE 177 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL--GKTS 247 V ++K +F +N E + G +ANPRNAA+G +R+L+P + R L ++ + + Sbjct: 178 VLLTKEEFERINQERLKNGLNVFANPRNAAAGSVRQLDPKETAKRNLIMIMYYIRQIEGY 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + Q++ L+ ++ +GFP ++ R + Y E++ R TLPY++DG+V KVD Sbjct: 238 KRKILSQHDALEALKEMGFPTSSLNRLVVGIEEAIEYKKELEIKRETLPYELDGIVIKVD 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +F LQ+ LG +SPRW I+ KF +QA+T++ DI++ +GRTGILTPVA LEPVNIGG + Sbjct: 298 DFELQESLGATTKSPRWAIAFKFPAQQATTKIKDIEVNVGRTGILTPVAILEPVNIGGVV 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ A+LH D I+ +DIR+GD V V+RAG+VIP+VV + + R + Sbjct: 358 VSRASLHTMDEIEK-----------KDIRIGDVVFVQRAGDVIPEVVKPVKDLRDGSEKK 406 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P CP+C SRV K A +RC+ + C E +KHFVSR A NI+G G Sbjct: 407 FVMPEKCPVCGSRV--------VKDGAYYRCSN-INCPKVLKESIKHFVSRKAMNIDGFG 457 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ ++ ADI+ L + + G+ NL SI + + Sbjct: 458 DKLIEQLVDK----GIVKNIADIYELDKETLMG------LDRVGEKLAENLISSIQRSKG 507 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 + +FI++LGIRHVG +A+ LA+ + + +N + L+ + +G+ Sbjct: 508 TTFAKFIYALGIRHVGEFVAKLLAERFKNLENLKKATK----------DELLAIDGIGEE 557 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 IA ++V F+ P+N+ ++ LL + +++ S I K VFTGTL K R + Sbjct: 558 IADSVVSFFSEPKNLQTIDKLLYYGIHFEDKTKEH--SRIAGKSFVFTGTLSK-PREYFK 614 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 E + + G +V +S+ D ++VG+NPGSKL+KA+Q GV +++EE+ LL+ Sbjct: 615 ELIEERGGIVRNSVSKNLDYLVVGENPGSKLKKAKQNGVSVISEEELYRLLE 666 >gi|293401241|ref|ZP_06645385.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305367|gb|EFE46612.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 662 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 238/702 (33%), Positives = 375/702 (53%), Gaps = 47/702 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 ++ + +L +++ + YY +P + D+EYD + + +P DPN Sbjct: 2 DVQQRILALRKQLDTYAYEYYVLDQPSVPDAEYDQAYQELLKLEDTYPQY---RDPNSIT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + + KVTH LSL +N+EDL+ F R+ + + +E K+D Sbjct: 59 QRVGGVVLDAFTKVTHKQQMLSLSNAFNLEDLQAFDERVRSIV-----PKVSYVVELKMD 113 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I++ Y G+FV A RGDG GEDV+ +R I +IP + +EVRGEV++ K Sbjct: 114 GLAISLHYHDGRFVQAVTRGDGFVGEDVTNNVRTIASIPMH--IERMGDVEVRGEVFMPK 171 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254 F LN + G +ANPRNAA+G +R+L+ +R L+ F++ + Sbjct: 172 KSFAELNAQREKNGEDVFANPRNAAAGSIRQLDSKIAASRKLDAFLYYYEDALGAGIQTH 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L+ M L VN R N+ + S+ EM R+ LPY+IDG+V KV+E + +Q Sbjct: 232 EEALETMEQLHIKVNPLRRVCNSMDEVWSFIQEMSEQRNDLPYEIDGMVIKVNELTAWEQ 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++PR+ I++KF ++ T+LLDI + +GRTG +TP A L PV + G ++ A LH Sbjct: 292 LGTTVKAPRYAIAYKFPAEEVVTKLLDIVLTVGRTGRITPNAVLAPVRVAGTSVSAAQLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED IK +DIR+ D V+V++AG++IP+VV +++ R+ + FP C Sbjct: 352 NEDMIK-----------EKDIRIQDDVVVRKAGDIIPEVVGPLLDRRNGTQARYVFPKEC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S +VR + AAH C C A+ +E + HF SRDA +I+ LG ++++FF Sbjct: 401 PVCGSALVRLSDE------AAHYCIN-QDCPARVVESIIHFASRDAMDIDTLGDKKVEFF 453 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 K + DI+ L+ ++ I + GF + S L D+I + LE + Sbjct: 454 HKE----GLLNTIEDIYHLKDHKE----TILQMEGFKERSYQKLIDAIEASKQNPLEDLV 505 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + LGIR VG + A+ LAK++L+ + L+ + +GDI AQ+IV Sbjct: 506 YGLGIRQVGKKAAKVLAKHFLTMEKLMAASE----------EELVAIKDIGDITAQSIVA 555 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F++ P+N+ ++ L E S K +V TG+LQ++ R++A+E + LG Sbjct: 556 FFREPKNVELIDHLRGFGLRMDSEEEIIQESMFTGKTVVLTGSLQQMTRNEAKELLESLG 615 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 A VS +S+KTD++I G+ GSKL KAQ LGV M+E FL Sbjct: 616 ANVSGSVSKKTDLVIYGEAAGSKLTKAQSLGVATMDEATFLQ 657 >gi|238650378|ref|YP_002916230.1| NAD-dependent DNA ligase LigA [Rickettsia peacockii str. Rustic] gi|257096313|sp|C4K0T1|DNLJ_RICPU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|238624476|gb|ACR47182.1| NAD-dependent DNA ligase LigA [Rickettsia peacockii str. Rustic] Length = 689 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 271/712 (38%), Positives = 418/712 (58%), Gaps = 29/712 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ +S E+A+K L L +I+ ++ YY P++ DSEYD L + FP L Sbjct: 4 IDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 N P K+G ++ KV H +P LSL ++ +D+R F+ RI F + + I Sbjct: 64 ---NSPSKKVGAKIANKFAKVMHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPI-- 118 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 EPKIDG + Y+ G A RGDG+ GED++A I+ I P N+PE +EVR Sbjct: 119 FCEPKIDGLSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPH-KIDNVPEFLEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE+YI K DFL LN E G+ +ANPRNAA+G LR+L+ + R L +FV+ G T Sbjct: 178 GEIYIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTE 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + A Q ++L K++ GF +N + A++ I ++Y +K+ R LPY+IDG+VYK++ Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +F+LQ ++G ARSPR+ +HKF T+LL I +Q+GRTG LTPVA LEP+ IGG Sbjct: 298 DFALQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN I +D+R+ D V ++RAG+VIPK++ + ++R D + Sbjct: 358 VSRATLHNFQEIAR-----------KDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTET 406 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P FC C S++ RC GL C AQ ER+ HFVS++A +IEGLG Sbjct: 407 FDTPLFCLSCNSKLHY------TPEDIIIRCDNGLNCPAQNYERIHHFVSKNAMDIEGLG 460 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q++F I P DIF L+ + +S K+EN+ G+G SV NL+ +I K +N Sbjct: 461 RKQVEFLIDK----GLISNPLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +SL RFI++LGIRH+G + A+ LA+ + SY NF ++ + + D + L + +GD Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLARAFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDK 576 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 I I++F+ NI ++ L + ++ + + SS + +K +VFTG+L I R +A+ Sbjct: 577 ILVDIIDFFDVKENIELIKKLGEILNIEDYKETREQSS-LTDKIVVFTGSLPTISRAEAK 635 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +LGA V+ +S TD+++ G + GSKL+KA++L +KI++EE++L L++ Sbjct: 636 ATAEKLGAKVAVGVSSNTDLVVAGVDAGSKLKKAKELNIKIIDEEEWLTLIK 687 >gi|15893019|ref|NP_360733.1| NAD-dependent DNA ligase LigA [Rickettsia conorii str. Malish 7] gi|81527939|sp|Q92GM7|DNLJ_RICCN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|15620219|gb|AAL03634.1| DNA ligase [Rickettsia conorii str. Malish 7] Length = 689 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 270/712 (37%), Positives = 418/712 (58%), Gaps = 29/712 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ +S E+A+K L L +I+ ++ YY P++ DSEYD L + FP L Sbjct: 4 IDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 N P K+G ++ KVTH +P LSL ++ +D+R F+ RI F + + I Sbjct: 64 ---NSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPI-- 118 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 EPKIDG + Y+ G A RGDG+ GED++A I+ I P N+PE +EVR Sbjct: 119 FCEPKIDGLSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPH-KIDNVPEFLEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE+YI K DFL LN E G+ +ANPRNAA+G LR+L+ + R L +FV+ G T Sbjct: 178 GEIYIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTE 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + A Q ++L K++ GF +N + A++ I ++Y +K+ R LPY+IDG+VYK++ Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +F+LQ ++G ARSPR+ +HKF T+LL I +Q+GRTG LTPVA LEP+ IGG Sbjct: 298 DFALQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN I +D+R+ D V ++RAG+VIPK++ + ++R D + Sbjct: 358 VSRATLHNFQEIAR-----------KDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTET 406 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P FC C S++ RC GL C AQ ER++HFVS++A +IEGLG Sbjct: 407 FDTPLFCLSCNSKLHY------TPEDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q++F I DIF L+ + +S K+EN+ G+G SV NL+ +I K +N Sbjct: 461 RKQVEFLIDK----GLISNLLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +SL RFI++LGIRH+G + A+ LA+ + SY NF ++ + + D + L + +GD Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLRTNEPDIYQKLKNLEGIGDK 576 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 I I++F+ NI ++ L + ++ + + S + +K +VFTG+L I R +A+ Sbjct: 577 ILVDIIDFFDVKENIELIKKLGEILNIEDYKETREQSG-LTDKIVVFTGSLPTISRAEAK 635 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +LGA V+ +S TD+++ G + GSKL+KA++L +KI++EE++L L++ Sbjct: 636 ATAEKLGAKVAVGVSSNTDLVVAGVDAGSKLKKAKELNIKIIDEEEWLTLIK 687 >gi|325121133|gb|ADY80656.1| DNA ligase [Acinetobacter calcoaceticus PHEA-2] Length = 679 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 259/720 (35%), Positives = 380/720 (52%), Gaps = 47/720 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ +++ L Q I+ H+ YY +P I DSEYD L + A+ +PDL +S Sbjct: 1 MATTSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDLVQS--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+GG+ VTH +P LSL ++N EDL F R+ + + + +E Sbjct: 58 DSPTTKVGGQALSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVEERL---PNQKVQYEVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188 K+DG I++ YE G V RGDG +GED++ ++ I +P+VL + EI +EVR Sbjct: 115 LKLDGLAISLWYENGLLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSDHFEIPHLLEVR 174 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247 GEV + K+ F LN E A G K +ANPRNAA+G LR+L+P F+ +G+ + Sbjct: 175 GEVLMPKSGFEKLNAEQEAKGDKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 234 Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ LQ + LGF + N+ + Y +++ RS L +IDG+V KV Sbjct: 235 PNHGLTTMHDSLQWLTKLGFEIAERQYLCNSIQEVQQRYEQIQQERSDLQVEIDGMVVKV 294 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q+QLG +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGV 354 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++N TLHN I L D+RVGD V V R G+VIPKV + R DA+ Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWPEFRPVDAE 403 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C S VV A RC+GGL C+AQ++E ++HFVSR A +IEGL Sbjct: 404 IVHLPENCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKALDIEGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ ++ ADI+ L ++ + I G+ SV NL D+I + Sbjct: 458 GDRWVESLLH----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASK 509 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI++LGIR VG AR LA + + + D +L + P VGD Sbjct: 510 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA----------DVEALKKTPDVGD 559 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I A+ I +F+ P NI ++ L+ + + V TGTL+++ R +A Sbjct: 560 ITAEWIADFFLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 + + LGA VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y TL Sbjct: 619 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIAVMNETDFLSLMASYGQTLS 678 >gi|325955534|ref|YP_004239194.1| DNA ligase [Weeksella virosa DSM 16922] gi|323438152|gb|ADX68616.1| DNA ligase [Weeksella virosa DSM 16922] Length = 663 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 217/703 (30%), Positives = 367/703 (52%), Gaps = 46/703 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + +L +E+ H+ YY +P I D E+D + + P+ DPN P + Sbjct: 4 QQRILALREELHQHNYRYYVLDQPSISDFEFDLKLKELQKLEKEHPEF---SDPNSPTVR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + + ++H SL+ ++IE+L+++I R+Y+ + + F E K DG Sbjct: 61 VGGSITKNFPTISHEYQMYSLDNSYSIEELKQWIARVYK-----NIENPTFVCELKYDGA 115 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I+I YE GK A RGDG G+D++A ++ I ++P +L + P +RGE+ I Sbjct: 116 SISILYENGKLTQAVTRGDGTQGDDITANVKTITSLPLILRGSYPTKFYMRGEITIPIKT 175 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N++ G YANPRN ASG L+ + ++ + + Q+ M Sbjct: 176 FDKINEQRKDEGLLLYANPRNTASGSLKLQDSAEVAKRGLQCFPYAFVGENLGFDEQWTM 235 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 ++K + LGF + + I++Y + +S R LP++IDG+V KV+ F+ Q++LG Sbjct: 236 IEKAKELGFKIPETASLCSNLEEIIAYITKWESKRHQLPFEIDGIVIKVNSFAQQEELGY 295 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++SPRW +++KF + A T L I Q+GRTG +TPVA L PV + G +I A+LHNED Sbjct: 296 TSKSPRWAVAYKFKAEAAETTLESITYQVGRTGAITPVANLHPVQLAGTIIRRASLHNED 355 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 IK L DIR+GD+V V++ GE+IPK+V + + R + + CP C Sbjct: 356 IIKKL-----------DIRIGDQVYVEKGGEIIPKIVGVNTDVRPAGTEEIRYIENCPSC 404 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +++VR A H C C Q + RL+HFVSR A +IE +G + + Sbjct: 405 GTKLVRGEGE------ALHYCLNEDGCPPQIIGRLEHFVSRKAMDIESIGSETAILLHE- 457 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + AD +TL + I + + S N+ D+I + S ER ++ L Sbjct: 458 ---AGLVNNVADFYTLTKE------MILPLERMAEKSAQNIIDAIENSKQQSFERLLYGL 508 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG +A+ LA ++ + ++ + + LI V +G+ IAQ+I+ ++ Sbjct: 509 GIRHVGNTVAKKLALHFGTMESLKKAT----------YDELILVEDIGEKIAQSIIAYFD 558 Query: 618 NPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 ++ ++ L S +G+ + +S ++ K +FTG+L K R +AQ+ V + G Sbjct: 559 KEEHLELIDRLKTYGLSLELGKEQTPISDKLTGKTFLFTGSLTKFTRAEAQKLVEEHGGK 618 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + +S+ D +I G+ GSKL+KA++L + ++ E +FL L+ Sbjct: 619 NLSAVSKNLDYLIAGEKAGSKLKKAEELKITVLTEGEFLELIN 661 >gi|332558050|ref|ZP_08412372.1| DNA ligase [Rhodobacter sphaeroides WS8N] gi|332275762|gb|EGJ21077.1| DNA ligase [Rhodobacter sphaeroides WS8N] Length = 704 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 303/714 (42%), Positives = 438/714 (61%), Gaps = 17/714 (2%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P++ L+ +A EL+ L + I + Y+ + P I D++YDALK R AI FP+L R Sbjct: 6 PVDQLTEAEAAAELARLAEAIEAANTAYHTHDAPQISDADYDALKLRNRAIEEQFPELRR 65 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 S + P +++GG + KV H + LSLE +++ ++ +I RI R+ D + Sbjct: 66 S---DSPSDRVGGALAEGFAKVRHDVRMLSLENAFDLAEVEDWIERIRRYLGHVGD--LL 120 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 FT EPKIDG +++RYEKG V AA RGDG +GE+V+ R I +P L + P+++EV Sbjct: 121 FTAEPKIDGLSLSLRYEKGHLVQAATRGDGETGENVTENARTIADLPTEL-DSAPDLLEV 179 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY+S DF ALN A G++ +ANPRNAA+G LR+L+P +R L FF + G Sbjct: 180 RGEVYMSHEDFAALNGRQEAAGQRLFANPRNAAAGSLRQLDPAVTASRPLRFFAYAWGAH 239 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE A Q+E + ++ LGF N R +++ + E++ R+ L YDIDG+VYKV Sbjct: 240 SEPLAATQHEAIARLAALGFATNPLTRLCTGPEELLAQHAEIERQRAALGYDIDGVVYKV 299 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ +LQ++LG RA +PRW I+HKFA + A T+L IDIQ+GRTG L+PVARL+PV +GG Sbjct: 300 DDLALQRRLGFRASTPRWAIAHKFAAQLAWTQLEGIDIQVGRTGALSPVARLKPVTVGGV 359 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ NATLHNEDYI G D+ G+ +RGG+DIRVGD V V RAG+VIPKV D+ ++ R A Sbjct: 360 VVANATLHNEDYIAGRDSKGQEIRGGKDIRVGDWVQVYRAGDVIPKVADVDLDRRPEGAA 419 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP CP C S +R+ + RCTGGL C AQQ+ERLKHFVSR AF+IEGL Sbjct: 420 PYRFPETCPECGSEAIREPG------DSVRRCTGGLICPAQQVERLKHFVSRAAFDIEGL 473 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q++ ++ IR PADIF L R + ++EN G+G S NL+ +I RR Sbjct: 474 GAKQVEALWRD----GWIRQPADIFELPNRYREGIQRLENREGWGRKSAENLFAAIEARR 529 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 I+L R IF+LGIRHVG A LA +Y S+ F + +W L+ + VG Sbjct: 530 RIALHRLIFALGIRHVGETTATLLATHYGSWAAFEAAMTRAEVGAGPEWQDLLSIDGVGA 589 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++A ++V + AV+AL ++ V+S + + +VFTGTL+K+ R +A Sbjct: 590 VLATSLVTAFHQEAERAAVDALAAHLTVEDAEVRAPVASPVAGRIVVFTGTLEKMSRAEA 649 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA VS +S +TD+++ G GSK ++A LG++ ++E+ +L L+ Sbjct: 650 KARAEALGAKVSGSVSARTDLVVAGPGAGSKAKQAAALGIETIDEDGWLRLIGD 703 >gi|229587074|ref|YP_002845575.1| NAD-dependent DNA ligase LigA [Rickettsia africae ESF-5] gi|254781406|sp|C3PLJ2|DNLJ_RICAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|228022124|gb|ACP53832.1| DNA ligase, NAD-dependent [Rickettsia africae ESF-5] Length = 689 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 272/712 (38%), Positives = 417/712 (58%), Gaps = 29/712 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ +S E+A+K L L +I+ ++ YY P++ DSEYD L + FP L Sbjct: 4 IDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 N P K+G ++ KVTH +P LSL ++ +D+R F+ RI F + + I Sbjct: 64 ---NSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPI-- 118 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 EPKIDG + Y+ G A RGDG+ GED++A I+ I P N+PE +EVR Sbjct: 119 FCEPKIDGLSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPH-KIDNVPEFLEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE+YI K DFL LN E G+ +ANPRNAA+G LR+L+ + R L +FV+ G T Sbjct: 178 GEIYIEKQDFLNLNKEQDEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTE 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + A Q ++L K++ GF +N + A++ I ++Y +K+ R LPY+IDG+VYK++ Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +F LQ ++G ARSPR+ +HKF T+LL I +Q+GRTG LTPVA LEP+ IGG Sbjct: 298 DFVLQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN I +D+R+ D V ++RAG+VIPK++ + ++R D + Sbjct: 358 VSRATLHNFQEIAR-----------KDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTET 406 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P FC C S++ RC GL C AQ ER++HFVS++A +IEGLG Sbjct: 407 FDTPLFCLSCNSKLHY------TPEDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q++F I P DIF L+ + +S K+EN+ G+G SV NL+ +I K +N Sbjct: 461 RKQVEFLIDK----GLISNPLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +SL RFI++LGIRH+G + A+ LA+ + SY NF ++ + + D + L + +GD Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDK 576 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 I I++F+ NI ++ L ++ + + SS + +K +VFTG+L I R +A+ Sbjct: 577 ILVDIIDFFDVKENIELIKKLGGILNIEDYKETREQSS-LTDKIVVFTGSLSTISRAEAK 635 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +LGA V+ +S TD+++ G GSKL+KA++L +KI++EE++L L++ Sbjct: 636 ATAEKLGAKVAVGVSSNTDLVVAGVGAGSKLKKAKELNIKIIDEEEWLTLIK 687 >gi|323140467|ref|ZP_08075395.1| DNA ligase (NAD+) [Phascolarctobacterium sp. YIT 12067] gi|322415035|gb|EFY05826.1| DNA ligase (NAD+) [Phascolarctobacterium sp. YIT 12067] Length = 679 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 248/708 (35%), Positives = 375/708 (52%), Gaps = 53/708 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 E L +EI +++ YY P I D+EYD + R + +PD + + P ++ Sbjct: 16 AEADKLRREIRHNEYLYYVLDAPEITDAEYDRMMVRLRELEARYPDSIPA---DSPTQRV 72 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + +V H P LSL +++ E+LR F R+ + + + +EPKIDG Sbjct: 73 GGRASSQFTEVRHLEPLLSLGNVFSAEELRAFDERVRSGL--PAGSKVEYVMEPKIDGLA 130 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYIS 194 ++ YE GK V AA RGDG GE+V+A +R I +IP L +PE+++VRGEVY+ Sbjct: 131 CSLIYENGKLVRAATRGDGVVGENVTANVRTIRSIPLTLKVPDGETVPELLDVRGEVYMP 190 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NFFVHGLGKTSEIFAK 252 + F+ LN++ G +ANPRNAA+G LR+L+P F + +G+ ++ Sbjct: 191 RQAFMRLNEQRAERGESEFANPRNAAAGSLRQLDPQVTASRSLSFFAYYLVGEGAQPK-- 248 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 E L + GF V+ + + Y + +R L YD DG V KV++ Q Sbjct: 249 -HSESLALLAHYGFKVSENYKVVENIDEAIKYIGDFNELRQGLSYDTDGAVIKVNDVYQQ 307 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG + PRW ++K+ +QA T L DID ++GRTG+LTP A L PV + G++I+ AT Sbjct: 308 RILGATGKDPRWATAYKYPPEQAETTLEDIDWRVGRTGVLTPTAVLTPVKLSGSVISRAT 367 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED+I+ +DIR+GDRV++ +AGE+IP+V+ ++V +R D + + PS Sbjct: 368 LHNEDFIR-----------AKDIRIGDRVVINKAGEIIPEVLRVVVEKRTGDEKEVAIPS 416 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C RV R AA RCT C A E L HFVSRDA NI+G G ++ Sbjct: 417 VCPECGWRVERQGEE------AAIRCTNP-HCPALGREGLIHFVSRDAMNIDGCGPSVIN 469 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 A +R AD+++L++ + G+ S NL ++ + + L++ Sbjct: 470 ALLD----AGLVRDAADLYSLRKDDL------LKLERMGEKSADNLLAALAESKKNELDK 519 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F+LGIRHVGA++AR LA + S + Q L ++ +GD IA+++ Sbjct: 520 LLFALGIRHVGAKVARILATEFGSMEKLQQA----------QPEELAQIRDIGDKIAESV 569 Query: 613 VEFYQNPRNICAVEALLKEVSPS-IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 V + P NI VE L + K LVFTGT+ + R +A+ Sbjct: 570 VTWLNVPANIDLVERLAAAGLTMTFTPTASQEDNPFFGKTLVFTGTMPTLGRAEAKTMAQ 629 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +GA VS +S+KTD +I G GSKLEKAQQLGV +++E +FL LL+ Sbjct: 630 DVGAKVSGSVSKKTDYVIAGAEAGSKLEKAQQLGVTVIDEAEFLRLLK 677 >gi|254445017|ref|ZP_05058493.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235] gi|198259325|gb|EDY83633.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235] Length = 668 Score = 544 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 220/709 (31%), Positives = 353/709 (49%), Gaps = 47/709 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S K + L EI HD+ YY+ ++P I D +YD LKR + A P+L Sbjct: 1 MSKASDLKRIEQLRAEIRRHDELYYRNAEPEISDFDYDGLKRELADLEAANPELPMEA-- 58 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P +G + H +P SL+ ++ ++ F+ R+ + + ++ + FT+E Sbjct: 59 -SPTQAVGDDRVEGFESYRHRLPMQSLDNTYSKDEFVAFVARVEKGLEIENAH---FTVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190 PKIDG +++ YE+G+ V A RG+G G+DV+A R I ++P L P++IE+RGE Sbjct: 115 PKIDGVAVSLTYEQGELVRAVTRGNGIEGDDVTANARFIESLPGSLQGDFHPDLIEIRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEI 249 +++ +F LN E G + + NPRN A+G ++ L+ + R L+ ++GLG Sbjct: 175 IFMHVEEFERLNAERREAGLEQFKNPRNLAAGTIKMLDREEVAKRKLDIVLYGLGDCRPA 234 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q E +++ G PV + G S E+ +R + DG V K+D F Sbjct: 235 VVSSQIEYRKQLVLWGLPVVERFWEVEGAEGAWSAVEELDEVRGGFAFPTDGAVVKLDSF 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 S Q LG +++PRW I+ KFA +QA T L I IQ+GRTG LTPVA L+PV + G ++ Sbjct: 295 SQQDALGATSKAPRWAIAVKFAAEQAETVLERITIQVGRTGTLTPVAELQPVQLAGTTVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN++ + +D+RVGD V+V++AGE+IP VV +++ +R ++ F Sbjct: 355 RATLHNQEEMAR-----------KDVRVGDTVVVEKAGEIIPAVVRVVLEKRPEESASFV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP CP C + V + + C Q RL+HF SR +IEGLG+ Sbjct: 404 FPERCPACGTEVSKIEGEVAVR-------CLNSECPDQVRGRLEHFASRQCLDIEGLGEA 456 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + + +DI+ L+ + F + S NL +I + + Sbjct: 457 VVDQLVARK----IVSNISDIYGLEYEDM------LALDKFAEKSARNLLAAIEASKGVE 506 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R + LGI VGA A+ LAK + ++ L+ + +G+ A Sbjct: 507 LWRLLHGLGIPQVGASAAKDLAKALGGVRELSEA----------SVERLVEIDGIGEKTA 556 Query: 610 QAIVEFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 IV ++ + RN V+AL +P + K V TGTL ++R +A+ Sbjct: 557 SGIVAYFGDERNKTVVDALFAAGMNPKAPERPSEADAIFAGKTFVITGTLPTMKRDEAKA 616 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V G V+ +S+KTD ++ G+ GSKL KA+ LGV +++E + L + Sbjct: 617 LVESKGGKVAGSVSKKTDFLVAGEAAGSKLTKAESLGVTVVDEAELLKM 665 >gi|312135376|ref|YP_004002714.1| DNA ligase, nad-dependent [Caldicellulosiruptor owensensis OL] gi|311775427|gb|ADQ04914.1| DNA ligase, NAD-dependent [Caldicellulosiruptor owensensis OL] Length = 673 Score = 544 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 244/703 (34%), Positives = 383/703 (54%), Gaps = 47/703 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 +K + L I+YHD YY P I D EYD L R + +P+ P+ P Sbjct: 5 IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVL---PDSPTQ 61 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ +V H +P LSL ++N +L F R+ D + +E KIDG Sbjct: 62 RVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTSD---FDYVVEYKIDG 118 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + + YE G FV A RGDG+ GEDV+ ++ I +IP L +I I VRGEV++ K+ Sbjct: 119 LSVALEYENGLFVRGATRGDGNIGEDVTENLKTIRSIPLRLKEDIS--IVVRGEVFMPKD 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 +F+ LN E +ANPRNAA+G LR+L+P + + E + E Sbjct: 177 EFIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNVQWCEKEIETHAE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ MR LGF V+ + +++ R +LP++IDG V K+++ L+ G Sbjct: 237 ALEYMRKLGFKVSPDYVVCKDIKEVYEVIRKIEEKRDSLPFEIDGAVVKLNQLRLRDVAG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 E A+SPRW +++KF ++ T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN Sbjct: 297 ETAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI+ +DIR+GD V+V++A E+IP+VV+++ ++R + F P CP+ Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + V++ + A+RCTG C A+ + HFVSRDA +I G+G+ + F+ Sbjct: 406 CGADVIKFEDE------VAYRCTGV-ECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFE 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ PADI+ L+ + + FG S NL +I +N L+R I++ Sbjct: 459 R----GLIKTPADIYYLKFEDLVN------LERFGVKSTNNLLKAIQASKNRPLDRLIYA 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRH+G + A++LA++ S + L+ +P G+ +A+++V F+ Sbjct: 509 LGIRHIGQKAAKTLAEHISSIDDLFTITE----------EQLLALPDFGEKMAKSVVTFF 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + +E L ++ K S+ +++ V TG L K R++A+E + LGA Sbjct: 559 RQEQTRHLIERLKAAGVNTVSEK-KAKSNILKDYTFVLTGALSKYSRNEAKEILESLGAK 617 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V+ +S+KT +IVG +PGSK KAQQLGVKI+NEE F L++ Sbjct: 618 VTESVSKKTTAVIVGQDPGSKYTKAQQLGVKILNEEDFEKLVK 660 >gi|149183793|ref|ZP_01862194.1| NAD-dependent DNA ligase LigA [Bacillus sp. SG-1] gi|148848496|gb|EDL62745.1| NAD-dependent DNA ligase LigA [Bacillus sp. SG-1] Length = 668 Score = 544 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 245/717 (34%), Positives = 386/717 (53%), Gaps = 56/717 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + I+ A ++++ L ++ ++ Y+ KP + D+EYD + AI FP+L P Sbjct: 1 MDIKSAEQKVAELHNLLNQYNYEYHVLDKPSVPDAEYDRVMNELIAIETEFPEL---RTP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KV H P LSL +N +DLR F ++ + + + E Sbjct: 58 DSPTQRVGGNTLEAFEKVEHRTPMLSLGNAFNEDDLRDFDRKVRQAAGEAY----SYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G F A RGDG GED++A ++ I +IP + + +EVRGE Sbjct: 114 LKIDGLAVSLRYEDGLFSQGATRGDGTIGEDITANLKTIKSIPLRIPEPL--TMEVRGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 ++ K F ALN +P+ANPRNAA+G LR+L+P +R L+ +++ + E Sbjct: 172 FMPKRSFEALNKAKEEKEEEPFANPRNAAAGSLRQLDPRIAASRNLDIYLYSIADVGETG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N ++ + ++ Y R LPYDIDG+V KVD Sbjct: 232 VVSHSEGLDLLDKLGFKTNKERKRCSNIEEVIQYVEGWVEKRPDLPYDIDGIVIKVDSLP 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG A+SPRW I++KF ++ T L DI++ +GRTG++TP A LEPV + G + Sbjct: 292 LQQELGTTAKSPRWAIAYKFPAEEVVTLLKDIELSVGRTGVVTPTAILEPVKVAGTTVQR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DI++GD V+VK+AG++IP+VV+++ R D Q F Sbjct: 352 ASLHNEDLIR-----------EKDIKIGDYVVVKKAGDIIPEVVNVLEERRTGDEQDFHM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 PEECPECGSGLVRLEKE------VALRCINPK-CPAQIREGLIHFVSRNAMNIDGLGEKV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + FK I ADI+ LQR Q + G+ SV NL ++I ++ SL Sbjct: 454 ISQLFKE----GLIVDVADIYRLQREQL------LQLERMGEKSVDNLLNAIEASKSNSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ A++LA+ + + N L + +GD +A Sbjct: 504 ERLLFGLGIRHVGAKAAKTLAQEFENIDNLKVASK----------DQLTAINEIGDKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 A+V +++ + + L + + + S K +V TG L+++ R++ Sbjct: 554 AVVAYFEKEEVMELIGELKTAGVNTEYKGPKPVKVDEIDSYFAGKTIVLTGKLEQLGRNE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A++ + +LG V+ +S+KTD+++ G++ GSKL KAQ+L ++I +EE L+++ N Sbjct: 614 AKQKIEELGGKVTGSVSKKTDLLVAGEDAGSKLSKAQELQIEIWDEE---KLIEELN 667 >gi|23013561|ref|ZP_00053441.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Magnetospirillum magnetotacticum MS-1] Length = 696 Score = 544 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 288/725 (39%), Positives = 431/725 (59%), Gaps = 41/725 (5%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 R +PI+ L+ +AR E + L +++ D+ Y+ P++ D YD KRR I F Sbjct: 2 SRPPVPIDVLTPFEARIEHAELVEKLVSWDEAYHGQDAPLVPDDVYDGAKRRLSGIEARF 61 Query: 63 PDLARSEDPNGPLN-KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 P+LA P+ K+G + K+ H++P LSL+ ++ ED+ +F ++ RF Sbjct: 62 PELAAK----SPIKDKVGAAPSEGFGKLVHALPMLSLDNAFSPEDVAEFDAKVRRFLGLS 117 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP--TIPRVLSL 179 D+ + + EPKIDG I +RYE G FV AA RGDG GEDV+ + P +PR L Sbjct: 118 DEAPLAYVAEPKIDGLSINLRYENGNFVSAATRGDGAEGEDVTRNLDTFPETQLPRRLGP 177 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238 + P +IE+RGEVY++K DFLALN + G KP+ANPRNAA+G LR+L+P +R L+ Sbjct: 178 DAPAVIEIRGEVYMTKADFLALNQRQESAGEKPFANPRNAAAGSLRQLDPKITASRPLSL 237 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 F + +G+ S + A + L++++ GF VN +R+ + G+++ Y + R+ LPYD Sbjct: 238 FAYAMGEASSLPAASHWGYLERLKAWGFVVNPLIRRCDGVAGLLAAYGSLGEARAALPYD 297 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKVD+ LQK+LG +RSPRW I+HKF +QA+T L IDIQ+GRTG LTPVARL Sbjct: 298 IDGIVYKVDDLELQKRLGFVSRSPRWAIAHKFPAEQATTLLEAIDIQVGRTGALTPVARL 357 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 PVN+GG +++NATLHNED I +D+RVGD V+V+RAG+VIP++V ++ Sbjct: 358 TPVNVGGVVVSNATLHNEDEIAR-----------KDVRVGDTVIVQRAGDVIPQIVGVVP 406 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + PF +P CP+C + VR RCTGGL C AQ ERLKHFVSR Sbjct: 407 GKPRGPT-PFVYPDTCPVCGAHAVRPEGE------VIRRCTGGLTCDAQAKERLKHFVSR 459 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 +AF+IEGLG + ++F + +R PA IFTL+ Q K+EN G+G S L Sbjct: 460 NAFDIEGLGDKNIEFLWDK----GWVRKPAHIFTLEAANQDRLQKLENFEGWGKRSTEKL 515 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 ++SI R ++ LERFIF+LGIR +G A+ LA++Y +Q + + + L Sbjct: 516 FESIRSRASMGLERFIFALGIRQIGEATAKRLARHYGGFQAWRDAM------TEEGKDEL 569 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLV 653 + +G +A +++F++ N A++ L++ + + +S I K +V Sbjct: 570 TSIEDIGPSVAADLLDFFKEEHNRAALDDLVRAMEALGGGVQDAKRIEAFASPIAGKAVV 629 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 FTGTL + R +A+ LGA V +S+KTD ++VG + GSK +A +LG+ I++E++ Sbjct: 630 FTGTLVTMTRPEAKARAEALGAKVVGSVSKKTDYVVVGADAGSKATEAAKLGLTILSEQE 689 Query: 714 FLFLL 718 +L L+ Sbjct: 690 WLDLI 694 >gi|311067136|ref|YP_003972059.1| NAD-dependent DNA ligase LigA [Bacillus atrophaeus 1942] gi|310867653|gb|ADP31128.1| NAD-dependent DNA ligase LigA [Bacillus atrophaeus 1942] Length = 668 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 240/715 (33%), Positives = 394/715 (55%), Gaps = 53/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E A++ L I+ + YY +P + DSEYD L + + PDL P Sbjct: 1 MDKEAAKRRAEDLRSTINQYSYEYYTLDEPSVPDSEYDKLMQELLDLEEEHPDL---RTP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + + KV H P LSL +N EDLR F R+ + + + + +E Sbjct: 58 DSPTQRVGGAVIDAFQKVRHGTPMLSLGNAFNAEDLRDFDRRVRQAVG----DDVAYNVE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG +GED++ ++ I IP + IEVRGE Sbjct: 114 LKIDGLAVSLRYENGYFVRGATRGDGTTGEDITENLKTIRNIPLKM--KRNLSIEVRGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F ALN+E + +P+ANPRNAA+G LR+L+P R L+ FV+ + + E+ Sbjct: 172 YMPKRSFEALNEERLKKEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q + L + +GF N ++ T ++ E+++ R+ LPY+IDG+V KVD Sbjct: 232 VDTQSQGLDFLDEIGFKTNQERKKCGTIDEVIDMIEELQAKRADLPYEIDGIVVKVDSLD 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG A+SPRW I++KF ++ T LLDI++ +GRTG++TP A LEPV + G + Sbjct: 292 QQEELGFTAKSPRWAIAYKFPAEEVVTTLLDIELNVGRTGVITPTAVLEPVKVAGTTVQR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+ D+V++K+AG++IP+VV+++ +R + F+ Sbjct: 352 ASLHNEDLIR-----------EKDIRILDKVVIKKAGDIIPEVVNVLTEQRTGQEKEFNM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 PTTCPECGSELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ + +R AD++ L + + + G+ S NL SI K + SL Sbjct: 454 ITQLFQEK----LVRNVADLYKLTKERVI------QLERMGEKSTDNLISSIQKSKENSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIR +G++ A++LA ++ S + + + L+ + +G+ +A Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMHFESLDHLKKA----------NKEELLAIDEIGEKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 A++ ++Q + ++ L + ++ + ++ S K +V TG L+++ R+ Sbjct: 554 AVITYFQKEEMLELLDELEQLGVNTLYKGPKKVKVEDSDSYFAGKTIVLTGKLEELSRND 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ + LG ++ +S+ TD++I G+ GSKL KA++L +++ NEEQ L L++ Sbjct: 614 AKAQIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAEELNIEVWNEEQLLGELKK 668 >gi|268316781|ref|YP_003290500.1| DNA ligase, NAD-dependent [Rhodothermus marinus DSM 4252] gi|262334315|gb|ACY48112.1| DNA ligase, NAD-dependent [Rhodothermus marinus DSM 4252] Length = 712 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 249/722 (34%), Positives = 372/722 (51%), Gaps = 52/722 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 +EA+ ++A + L + ++ H YY P+I D++YD L + + FP+L Sbjct: 29 DLEAIDRKEAEALAARLREVLNQHAYRYYVLDNPLIPDADYDLLMQALRKLEARFPELV- 87 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++GG KV H P LSL + ED+R + R R ++ + Sbjct: 88 --TPDSPTQRVGGPPLGRFEKVRHPEPLLSLNNAFGEEDVRVWYERCCRMLAERLGQPVQ 145 Query: 128 --FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-----RVLSLN 180 T E KIDG + + YE G A RGDG GE+V+ +R IP IP Sbjct: 146 PAVTAELKIDGLAMALTYENGVLTVGATRGDGIEGENVTQNVRTIPAIPLRIPVDPAVGP 205 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P +EVRGEVY+ K DF LN+++ A G +P+ANPRNAA+G +R+LNP R L+FF Sbjct: 206 PPTRLEVRGEVYMRKRDFERLNEQLQARGERPFANPRNAAAGSVRQLNPQVTALRPLSFF 265 Query: 240 VHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G+G QYE+LQ + LGFPVN R+ ++ Y R L Y+ Sbjct: 266 AYGIGPVEGAEVPDSQYEVLQWLGRLGFPVNEHARRFEHLDDVLEYCRYWTEHRDELDYE 325 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+V K+D Q LG + +PRW +++KF ++A TRLLDI + +GRTG++ PVA L Sbjct: 326 IDGVVLKIDHRPWQALLGAISNAPRWAVAYKFPAREAITRLLDIMVSVGRTGVVKPVAVL 385 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GG ++ ATLHNEDY++ RDIR+GD V+V RAG+VIP+VV +V Sbjct: 386 EPVEVGGVTVSQATLHNEDYVRS-----------RDIRIGDLVVVIRAGDVIPQVVRPVV 434 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 R + +P+ P CP C S++VR A + C C AQ + L+HF R Sbjct: 435 EARTGNERPWRMPERCPSCGSQLVRLPGE------ADYYCVAS-DCPAQFVRLLEHFAGR 487 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 DA +IEG+G Q +S +R +D++ + + GF + NL Sbjct: 488 DAMDIEGMGSQVARQLAES----GLVRRLSDLYR------LKLEDLLKLEGFAETRARNL 537 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +I + L R +F LGIRHVG A L + + S A L Sbjct: 538 LRAIEASKQRPLSRLLFGLGIRHVGKTTAELLVQRFASIDELAAAT----------IDEL 587 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTG 656 + VG I A++I +++ N +E L + + + S + K V TG Sbjct: 588 AALEGVGPITAESIANWFRVEDNRRLIEELKELGVNTQRLPEEAPAAESPVRGKTFVLTG 647 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 L + R +A+E + + G V++ +SR TD ++VG+NPGSK ++A+QLG+ +++E+ L Sbjct: 648 ALPHLTRKEAEELIKRAGGRVASSVSRNTDYVVVGENPGSKYDRARQLGIPMLDEDGLLR 707 Query: 717 LL 718 LL Sbjct: 708 LL 709 >gi|116748867|ref|YP_845554.1| DNA ligase, NAD-dependent [Syntrophobacter fumaroxidans MPOB] gi|116697931|gb|ABK17119.1| DNA ligase, NAD-dependent [Syntrophobacter fumaroxidans MPOB] Length = 694 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 265/719 (36%), Positives = 387/719 (53%), Gaps = 52/719 (7%) Query: 9 IEAL-SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 + A+ E+A + +L +EI +H+ YY +P I D YD L R + ++P L Sbjct: 17 VRAMPDREKAHARIEALREEIRHHNYLYYVLDRPEISDEAYDGLFRELVRLEESYPALI- 75 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++G H+IP LSLE + ++ +F R+ + D + Sbjct: 76 --TPDSPTQRVGAAPAEKFLPFPHTIPMLSLENAMSEAEVFEFARRVRKILG--DRGDVD 131 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-----NIP 182 F EPK+DG + + YE G+ A RGDG+ GEDV+ + I IP L + P Sbjct: 132 FMAEPKMDGLAVELVYENGELTGAGTRGDGYVGEDVTRNAKTIRAIPLKLYAGAGGASPP 191 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 I VRGEVY+ + DF ALN G +ANPRNAA+G LR+L+P+ R L F + Sbjct: 192 ARIAVRGEVYMDRKDFAALNRSREQAGEPLFANPRNAAAGSLRQLDPSVTAARSLKAFFY 251 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G+G+ S K Q + L+++R G PVN R + VS+YNE+ + R LP++IDG Sbjct: 252 GVGEVSGYRFKTQAQTLEQLRRWGLPVNPLSRVCPSIEDAVSFYNEIAAGRDALPFEIDG 311 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V KV+ Q+ LGE++RSPRW I++KF+ QA TR+LDI +Q+GRTG+LTPVA LEPV Sbjct: 312 VVVKVNSIEWQEMLGEKSRSPRWAIAYKFSPHQARTRVLDIKVQVGRTGVLTPVAELEPV 371 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 +GG + ATLHN+D ++ +DIRV D+V+V+RAG+VIP+VV++I R Sbjct: 372 TVGGVTVRRATLHNQDEVER-----------KDIRVRDQVMVRRAGDVIPEVVEVIGEAR 420 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 + F P CP C S VVR A HRC C AQ L+HF SRDA Sbjct: 421 TGGEEVFQMPGQCPSCGSEVVRLPEE------AVHRCLN-RNCPAQIKASLRHFASRDAM 473 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 NIEGLGK + + +D++ L +E + GF S NL +S Sbjct: 474 NIEGLGKNIVSMLVDR----GIVESVSDLYRLSVE------TLEQLPGFAGKSSRNLVES 523 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I + + +L F+++LGI HVG+ +AR LA+ + + + L+ V Sbjct: 524 IERSKKTNLADFLYALGIYHVGSHVARLLAERFGTLDAVRRA----------SVEELMSV 573 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQ 659 VG+++A+++V ++ P N VE+LL + V + K +VFTG L Sbjct: 574 NGVGEVVARSVVHYFSLPANRTLVESLLSAGLEMAATEPEAGPVDAFWNGKTVVFTGALS 633 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R A GA VS +SRKTDI++ G +PGSK+EKA+QLG+ I++E +FL L Sbjct: 634 SMTRSNAAALTASRGARVSDSVSRKTDIVVAGADPGSKVEKARQLGITILDEREFLERL 692 >gi|301052018|ref|YP_003790229.1| DNA ligase [Bacillus anthracis CI] gi|300374187|gb|ADK03091.1| DNA ligase [Bacillus cereus biovar anthracis str. CI] Length = 669 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 247/715 (34%), Positives = 389/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q DD ++ + E Sbjct: 58 DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPVCESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD+++L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|166216279|sp|A0LI67|DNLJ_SYNFM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 675 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 264/714 (36%), Positives = 384/714 (53%), Gaps = 51/714 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 E+A + +L +EI +H+ YY +P I D YD L R + ++P L P+ Sbjct: 3 DREKAHARIEALREEIRHHNYLYYVLDRPEISDEAYDGLFRELVRLEESYPALI---TPD 59 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++G H+IP LSLE + ++ +F R+ + D + F EP Sbjct: 60 SPTQRVGAAPAEKFLPFPHTIPMLSLENAMSEAEVFEFARRVRKILG--DRGDVDFMAEP 117 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-----NIPEIIEV 187 K+DG + + YE G+ A RGDG+ GEDV+ + I IP L + P I V Sbjct: 118 KMDGLAVELVYENGELTGAGTRGDGYVGEDVTRNAKTIRAIPLKLYAGAGGASPPARIAV 177 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY+ + DF ALN G +ANPRNAA+G LR+L+P+ R L F +G+G+ Sbjct: 178 RGEVYMDRKDFAALNRSREQAGEPLFANPRNAAAGSLRQLDPSVTAARSLKAFFYGVGEV 237 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 S K Q + L+++R G PVN R + VS+YNE+ + R LP++IDG+V KV Sbjct: 238 SGYRFKTQAQTLEQLRRWGLPVNPLSRVCPSIEDAVSFYNEIAAGRDALPFEIDGVVVKV 297 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + Q+ LGE++RSPRW I++KF+ QA TR+LDI +Q+GRTG+LTPVA LEPV +GG Sbjct: 298 NSIEWQEMLGEKSRSPRWAIAYKFSPHQARTRVLDIKVQVGRTGVLTPVAELEPVTVGGV 357 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATLHN+D ++ +DIRV D+V+V+RAG+VIP+VV++I R + Sbjct: 358 TVRRATLHNQDEVER-----------KDIRVRDQVMVRRAGDVIPEVVEVIGEARTGGEE 406 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F P CP C S VVR A HRC C AQ L+HF SRDA NIEGL Sbjct: 407 VFQMPGQCPSCGSEVVRLPEE------AVHRCLN-RNCPAQIKASLRHFASRDAMNIEGL 459 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 GK + + +D++ L +E + GF S NL +SI + + Sbjct: 460 GKNIVSMLVDR----GIVESVSDLYRLSVE------TLEQLPGFAGKSSRNLVESIERSK 509 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L F+++LGI HVG+ +AR LA+ + + + L+ V VG+ Sbjct: 510 KTNLADFLYALGIYHVGSHVARLLAERFGTLDAVRRA----------SVEELMSVNGVGE 559 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRH 664 ++A+++V ++ P N VE+LL + V + K +VFTG L + R Sbjct: 560 VVARSVVHYFSLPANRTLVESLLSAGLEMAATEPEAGPVDAFWNGKTVVFTGALSSMTRS 619 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A GA VS +SRKTDI++ G +PGSK+EKA+QLG+ I++E +FL L Sbjct: 620 NAAALTASRGARVSDSVSRKTDIVVAGADPGSKVEKARQLGITILDEREFLERL 673 >gi|254510866|ref|ZP_05122933.1| DNA ligase, NAD-dependent [Rhodobacteraceae bacterium KLH11] gi|221534577|gb|EEE37565.1| DNA ligase, NAD-dependent [Rhodobacteraceae bacterium KLH11] Length = 750 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 300/764 (39%), Positives = 435/764 (56%), Gaps = 59/764 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M K + L+ E A++EL+ L E+ + Y+ P + D +YDALKRR I Sbjct: 1 MSK--TTAVADLTEEDAQQELARLAAELLRANQLYHAEDAPELSDGDYDALKRRNAEIEA 58 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FPDL R+ + P ++G + KV+H++ +SL ++ D+ F I ++ Sbjct: 59 RFPDLKRT---DSPSEQVGARPSDGFAKVSHAMRMMSLGNAFDDTDIVDFDRSIRKYLGL 115 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 D + FT EPKIDG +++RYE+G+ V AA RGDG GE+V+A R + IP ++ Sbjct: 116 TGDAPLAFTAEPKIDGLSLSLRYEQGELVQAATRGDGEVGENVTANARTVADIPHRIAGA 175 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P+++EVRGEVY+S DF ALN G K +ANPRNAA+G LR+L+ R L FF Sbjct: 176 -PDVLEVRGEVYMSHQDFEALNTRQAETGGKTFANPRNAAAGSLRQLDSEITRARPLKFF 234 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ S A+ Q +Q+++ GF +N R T ++ +Y +++ R+TL YDI Sbjct: 235 AYAWGELSAPLAETQMGAIQRLKAFGFQINALTRLCATPSQMLDHYRRIEAQRATLGYDI 294 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD+ LQ +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL Sbjct: 295 DGVVYKVDDLGLQSRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLH 354 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG +++NATLHNEDYI G DA G V+R G+DIRVGD V V RAG+VIPK+ D+ ++ Sbjct: 355 PVTVGGVVVSNATLHNEDYIAGRDAKGGVIRDGKDIRVGDWVQVYRAGDVIPKLADVDLS 414 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R DAQP++FP+ CP C S R+ A RCTGGL C AQ +E+LKHFVSR Sbjct: 415 KRPADAQPYAFPTTCPECGSDATREEG------DAVRRCTGGLICPAQAVEKLKHFVSRK 468 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+IEGLG +Q++ F+ DP I PADIFTLQ R + +++N G+GD S NL+ Sbjct: 469 AFDIEGLGAKQIEMFY--GDPVLPINTPADIFTLQERDTKALARLKNRDGWGDTSANNLF 526 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN-------------- 585 ++I +R I R +F+LGIRHVG A+ LA +Y + A I+ Sbjct: 527 EAIEDKRKIPFARLLFALGIRHVGEVGAKDLALFYRDWDVMAASIDTARPAALAQRAADE 586 Query: 586 -----------------------------NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 + A W LI + +G + ++ + + Sbjct: 587 AEEVERIAAADEGRRAKLKDARDSVIAGREVPADAASAWADLIGIDGIGATLGLSLSDAF 646 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 N A + L K + + S + K +VFTGTL+K+ R +A+ LGA Sbjct: 647 ANADERAAFDTLRKHLEI-VAPDAPASDSPVAGKTVVFTGTLEKMTRAEAKARAEALGAK 705 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 VS +S+KTD+++ G GSK +KA LG++ ++E+ +L L+ Sbjct: 706 VSGSVSQKTDLLVAGPGAGSKAKKAADLGIRTLDEDGWLQLIGD 749 >gi|296135970|ref|YP_003643212.1| DNA ligase, NAD-dependent [Thiomonas intermedia K12] gi|295796092|gb|ADG30882.1| DNA ligase, NAD-dependent [Thiomonas intermedia K12] Length = 688 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 243/708 (34%), Positives = 370/708 (52%), Gaps = 52/708 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 Q + + L EI+ D YY P+ D++YDAL R I P+L P+ P Sbjct: 8 AQPAERAAQLRAEIARLDHAYYVLDAPLAPDADYDALFRELQQIEADHPEL---RTPDSP 64 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWN--IEDLRKFITRIYRFWQK-KDDNSIFFTLE 131 ++GG V H++P LS++ + E F R+ DD + + E Sbjct: 65 TQRVGGAPLPEFAPVRHAVPMLSIQTETDTTPEGAVAFDQRVRNRLGLSADDPPVNYCAE 124 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG I++RYE G+ V AA RGDG +GEDV+ +R I ++P L N P ++EVRGE Sbjct: 125 LKFDGLAISLRYEHGQLVQAATRGDGETGEDVTQNVRTIRSVPLQLRGNPPAVLEVRGEA 184 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT--SE 248 + + DF N G NPRN A+G +R+L+P R L F+ +G G+ Sbjct: 185 LMKRADFERYNARQRDKGLPTLVNPRNGAAGSIRQLDPAIAAQRPLAFYAYGWGEIADWA 244 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + ML G PV ++ ++ + + R +LP+DIDG+VYKVD Sbjct: 245 QQPDTHHAMLDAFETFGLPVAPQRVHGPGAQTLIDFHARIAAARDSLPFDIDGVVYKVDS 304 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ++LG R R P W ++HK+ ++ ST+++ IDIQ+GRTG LTPVA+LEPV +GG + Sbjct: 305 LALQRELGFRNREPVWAVAHKYPAQERSTKVIGIDIQVGRTGKLTPVAKLEPVFVGGVTV 364 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQP 427 TNATLHNED ++ +D+RVGD V+V+RAG+VIP+VV ++++ R D +P Sbjct: 365 TNATLHNEDEVRR-----------KDVRVGDTVIVRRAGDVIPEVVSVVMSARPADVGEP 413 Query: 428 FSFPS----FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 F CP+C S +VR+ A RCTGGL C+AQ+ + + H+ SR A +I Sbjct: 414 FDLYQRLGGQCPVCGSAIVREAGE------ADWRCTGGLFCAAQRKQAILHYASRRAMDI 467 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGLG++ +D A +R+ D++ L K+ + + S NL ++ Sbjct: 468 EGLGEKLVDQLVD----AGIVRVLPDLYRL------GLLKLAALDRMAEKSAANLLQALQ 517 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + +L RF+++LGIRHVG A+ LA+++ L+ VP Sbjct: 518 ASKTTTLARFLYALGIRHVGEATAKDLARHFGGLDAILDA----------SLEQLLEVPD 567 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 VG ++AQ+I F+ P N VE L S +++ + K LV TG L + Sbjct: 568 VGPVVAQSIRTFFDQPHNREVVEQLRACGVHWSEAAPDRDAPKPLAGKTLVLTGILPTLS 627 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 R +A+ + G V+ +S+KTD ++ G GSKL KAQ+LGV +++ Sbjct: 628 REEAKARIEAAGGKVAGSVSKKTDYVVAGAEAGSKLAKAQELGVTVLD 675 >gi|217077826|ref|YP_002335544.1| DNA ligase, NAD-dependent [Thermosipho africanus TCF52B] gi|254781437|sp|B7IDX6|DNLJ_THEAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|217037681|gb|ACJ76203.1| DNA ligase, NAD-dependent [Thermosipho africanus TCF52B] Length = 665 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 235/708 (33%), Positives = 380/708 (53%), Gaps = 46/708 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + ++ ++E+ L +EI YH+ YY + P+I D EYD L ++ + +P+ P Sbjct: 1 MDKKKFKEEIEKLREEIEYHNYRYYVLADPVISDEEYDKLLKKLIELEKKYPEF---YSP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P K+GG++ KV HSIP LSL+ +N E++++F RI + N + + E Sbjct: 58 TSPTQKVGGKVLDGFKKVMHSIPMLSLDNTYNEEEIKEFDERIKKLLGV---NEVEYVCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG + +RYE G+FV A RGDG GED+S ++ I +IP L N+ IEVRGE+ Sbjct: 115 LKIDGISVALRYENGQFVTALSRGDGIEGEDISENVKKIKSIPLRLFKNL--TIEVRGEI 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 ++ +F N G +P+ANPRNA +G +R+L+ + R L+ F++ + Sbjct: 173 FMPVKEFEKYNKIAEEEGLQPFANPRNATAGTIRQLDSSIVAKRNLDSFIYYVVNPEIYG 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K Q+E L+ ++ +GF N R + + ++ ++ EM R+ L Y IDGLV KV+ F Sbjct: 233 LKTQWEALKFLKEIGFKTNPYSRLCHDVNCVIDFWKEMTKKRTQLDYWIDGLVIKVNNFE 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LGE A++PRW I+ KF +A +++L+I++ +GRTG++TPVA LEP+N+ G+++ Sbjct: 293 YQRKLGETAKAPRWAIAFKFPSIKAESKILNIELNVGRTGVITPVAVLEPINLEGSIVKR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN DYIK +DIR+GD V V++AG +IP++V +I +R Sbjct: 353 ASLHNFDYIK-----------EKDIRIGDHVYVEKAGGIIPQIVSVIKEKRTGKELEIEI 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CPIC +V + + C + ++ FVS+ AFNI GLG++ Sbjct: 402 PKSCPICGGKVGKISEEEVAIRCLNPHCPQ------KLKRHMEIFVSKSAFNISGLGEKI 455 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ A I ADIF L + + I G G S+ N+ + I K +N L Sbjct: 456 VEKIVD----ARLINDVADIFYL------TPFDLAQISGLGQKSIANILEQIEKAKNTPL 505 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R I LGI VG + A+ LA + S + +Q + L + +G +A+ Sbjct: 506 YRVIIGLGIPLVGEKTAKILADKFKSIKALSQA----------SYDELTSIEGIGPEVAK 555 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I+E+++N + + L + SS++ V TG R + +E + Sbjct: 556 NIIEYFKNEKTKEIIRKLENAGVKLEQEEDTKKSSKLAGLTFVITGKFNSFTREEVKEII 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +LG V+ +S KTD ++VG+ PGSK +KA +LGVKI+NE++F ++ Sbjct: 616 EKLGGKVTNTVSSKTDYLLVGEKPGSKYQKALELGVKIINEDEFKKMI 663 >gi|299771367|ref|YP_003733393.1| DNA ligase, NAD-dependent [Acinetobacter sp. DR1] gi|298701455|gb|ADI92020.1| DNA ligase, NAD-dependent [Acinetobacter sp. DR1] Length = 679 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 255/720 (35%), Positives = 379/720 (52%), Gaps = 47/720 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ +++ L Q I+ H+ YY +P I DSEYD L + A+ +PD +S Sbjct: 1 MATTSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDQVQS--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+GG+ VTH +P LSL ++N EDL F R+ + + + +E Sbjct: 58 DSPTTKVGGQALSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVEERL---PNQKVQYEVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188 K+DG I++ YE G + RGDG +GED++ ++ I +P+VL + EI +EVR Sbjct: 115 LKLDGLAISLWYENGVLIRGVTRGDGETGEDITQNVKTIRNLPKVLHSDHFEIPRLLEVR 174 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247 GEV + K+ F LN + A G K +ANPRNAA+G LR+L+P F+ +G+ + Sbjct: 175 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCE 234 Query: 248 EIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ LQ + LGF + N+ + Y +++ R L +IDG+V KV Sbjct: 235 PNHNLTTMHDSLQWLTQLGFEIAERQYLCNSIQEVQQRYEQIQQERPDLQVEIDGMVVKV 294 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q+QLG +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGV 354 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++N TLHN I L D+RVGD V V R G+VIPKV + R P+A+ Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWPEFRSPEAE 403 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C S VV A RC+GGL C+AQ++E ++HFVSR A +IEGL Sbjct: 404 IVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKALDIEGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ ++ ADI+ L ++ + I G+ SV NL D+I + Sbjct: 458 GDRWVESLLH----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASK 509 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI++LGIR VG AR LA + + + D +L + P VGD Sbjct: 510 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA----------DVEALKKTPDVGD 559 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I A+ I +F+ P NI ++ L+ + + V TGTL+++ R +A Sbjct: 560 ITAEWIADFFLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 + + LGA VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y TL Sbjct: 619 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIAVMNETDFLSLMASYGQTLS 678 >gi|305667253|ref|YP_003863540.1| DNA ligase [Maribacter sp. HTCC2170] gi|88708187|gb|EAR00425.1| DNA ligase [Maribacter sp. HTCC2170] Length = 664 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 223/706 (31%), Positives = 352/706 (49%), Gaps = 46/706 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 R+++ +L E+ H+ YY P I D ++D + + P+ D P Sbjct: 2 SVRQKIEALRAELREHNHNYYVLDNPTISDYDFDMKLKELQELEAKHPEF---YDATSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG++ + + H SL+ ++ EDL + RI R D + FT E K D Sbjct: 59 LRVGGDITKNFNTIVHEHRMYSLDNSYSKEDLEDWEKRIQRILG---DAEVEFTCELKYD 115 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I++ YE GK A RGDG G++V+A I+ I ++P L + P ++RGE+ + Sbjct: 116 GASISLTYEDGKLSKAVTRGDGFQGDEVTANIKTIRSVPLQLKGDYPPKFDIRGEIILPL 175 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 + F +N E +A G PY NPRN ASG L+ + + + + QY Sbjct: 176 DGFEKMNQERVAAGEDPYMNPRNTASGSLKLQDSAAVAQRPLDCLLYGIVGPNTGITSQY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 EML+K R GF V + + T ++++ R LPY+ DG+V KV+ Q +L Sbjct: 236 EMLEKSRDWGFKVPSIAQLCKTIDEVMAFVEYWDVHRHDLPYETDGVVIKVNSLQHQDEL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++SPRW +++KF +Q ST L +I Q+GRTG +TPVA LEPV + G + A+LHN Sbjct: 296 GYTSKSPRWAMAYKFKAEQVSTVLNEITYQVGRTGAITPVANLEPVLLAGTTVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+ L DIR D V V++ GE+IPK++ + + +R D++P + + CP Sbjct: 356 ADQIEKL-----------DIRERDTVFVEKGGEIIPKIIGVDIPKRPADSEPIKYITLCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C++ +VR A H CT C Q R++HF+SR A +IEGLG + ++ F Sbjct: 405 ECETELVRTEG------DAKHYCTNFYGCPTQITGRIQHFISRKAMDIEGLGGETVELLF 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 K IR AD++ L + Q + + S NL + I ER +F Sbjct: 459 KE----GLIRNYADLYILTKEQIM------PLERMAEKSAENLVKGVADSTTIPFERVLF 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG +A+ LAK Y + + LI V +G+ IAQ++VEF Sbjct: 509 ALGIRFVGETVAKKLAKAYKNIDALMAASS----------EELIAVDEIGERIAQSVVEF 558 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +QN RN+ + L +K N + ++ K V +G + I R+ ++ + Sbjct: 559 FQNERNLDNIARLKSYGVQFEISADKLLNQTEILKGKTFVVSGVFETISRNDLKKLIEDN 618 Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G V + +S KT ++ GD G SK KA++L + I+ E+ FL ++ Sbjct: 619 GGKVGSSISSKTSFLVAGDKMGPSKRTKAEKLDIPIITEQDFLNMV 664 >gi|1352292|sp|P49421|DNLJ_RHOMR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|607820|gb|AAA93198.1| DNA ligase [Rhodothermus marinus] Length = 712 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 249/722 (34%), Positives = 372/722 (51%), Gaps = 52/722 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 +EA+ ++A + L + ++ H YY P+I D++YD L + + FP+L Sbjct: 29 DLEAIDRKEAEALAARLREVLNQHAYRYYVLDNPLIPDADYDLLMQALRKLEARFPELV- 87 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++GG KV H P LSL + ED+R + R R ++ + Sbjct: 88 --TPDSPTQRVGGPPLGRFEKVRHPEPLLSLNNAFGEEDVRVWYERCCRMLAERLGQPVQ 145 Query: 128 --FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-----RVLSLN 180 T E KIDG + + YE G A RGDG GE+V+ +R IP IP Sbjct: 146 PAVTAELKIDGLAMALTYENGVLSVGATRGDGIEGENVTQNVRTIPAIPLRIPVDPAVGP 205 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P +EVRGEVY+ K DF LN+++ A G +P+ANPRNAA+G +R+LNP R L+FF Sbjct: 206 PPTRLEVRGEVYMRKRDFERLNEQLQARGERPFANPRNAAAGSVRQLNPQVTALRPLSFF 265 Query: 240 VHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G+G QYE+LQ + LGFPVN R+ ++ Y R L Y+ Sbjct: 266 AYGIGPVEGAEVPDSQYEVLQWLGRLGFPVNEHARRFEHLDDVLEYCRYWTEHRDELDYE 325 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+V K+D Q LG + +PRW +++KF ++A TRLLDI + +GRTG++ PVA L Sbjct: 326 IDGVVLKIDHRPWQALLGAISNAPRWAVAYKFPAREAITRLLDIMVSVGRTGVVKPVAVL 385 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GG ++ ATLHNEDY++ RDIR+GD V+V RAG+VIP+VV +V Sbjct: 386 EPVEVGGVTVSQATLHNEDYVRS-----------RDIRIGDLVVVIRAGDVIPQVVRPVV 434 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 R + +P+ P CP C S++VR A + C C AQ + L+HF R Sbjct: 435 EARTGNERPWRMPERCPSCGSQLVRLPGE------ADYYCVAS-DCPAQFVRLLEHFAGR 487 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 DA +IEG+G Q +S +R +D++ + + GF + NL Sbjct: 488 DAMDIEGMGSQVARQLAES----GLVRPLSDLYR------LKLEDLLKLEGFAETRARNL 537 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +I + L R +F LGIRHVG A L + + S A L Sbjct: 538 LRAIEASKQRPLSRLLFGLGIRHVGKTTAELLVQRFASIDELAAAT----------IDEL 587 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTG 656 + VG I A++I +++ N +E L + + + S + K V TG Sbjct: 588 AALEGVGPITAESIANWFRVEDNRRLIEELKELGVNTQRLPEEAPAAESPVRGKTFVLTG 647 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 L + R +A+E + + G V++ +SR TD ++VG+NPGSK ++A+QLG+ +++E+ L Sbjct: 648 ALPHLTRKEAEELIKRAGGRVASSVSRNTDYVVVGENPGSKYDRARQLGIPMLDEDGLLR 707 Query: 717 LL 718 LL Sbjct: 708 LL 709 >gi|229028145|ref|ZP_04184287.1| DNA ligase [Bacillus cereus AH1271] gi|228733163|gb|EEL84003.1| DNA ligase [Bacillus cereus AH1271] Length = 669 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 246/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A++ + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKQRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q DD ++ + E Sbjct: 58 DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD+++L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|302871618|ref|YP_003840254.1| DNA ligase, NAD-dependent [Caldicellulosiruptor obsidiansis OB47] gi|302574477|gb|ADL42268.1| DNA ligase, NAD-dependent [Caldicellulosiruptor obsidiansis OB47] Length = 673 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 240/703 (34%), Positives = 378/703 (53%), Gaps = 47/703 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 +K + L I+YHD YY P I D EYD L R + +P+ P+ P Sbjct: 5 IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVL---PDSPTQ 61 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ +V H +P LSL ++N +L F R+ D + +E KIDG Sbjct: 62 RVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTLD---FDYVVEYKIDG 118 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + + YE G FV A RGDG+ GEDV+ ++ I +IP L ++ I VRGEV++ K+ Sbjct: 119 LSVALEYENGLFVRGATRGDGNIGEDVTENLKTIRSIPLRLKEDVS--IVVRGEVFMPKD 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 +F+ LN E +ANPRNAA+G LR+L+P + + E + E Sbjct: 177 EFIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNVQWCEKELETHAE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ +R LGF V+ +++ R LP++IDG V K+++ L+ G Sbjct: 237 ALEFLRHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 E A+SPRW +++KF ++ T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN Sbjct: 297 ETAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI+ +DIR+GD V+V++A E+IP+VV+++ ++R + F P CP+ Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQEKIFEMPKKCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + V++ + A+RCTG C A+ + HFVSRDA +I G+G+ + F+ Sbjct: 406 CGADVIKFEDE------VAYRCTGV-ECPAKSYRLILHFVSRDAMDIAGMGEMIVKTLFE 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ PADI+ L+ + + FG S NL +I +N L+R I++ Sbjct: 459 R----GLIKTPADIYYLKFEDLVN------LERFGVKSTNNLLKAIQASKNRPLDRLIYA 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRH+G + A++LA++ S + L+ +P G+ +A+++V F+ Sbjct: 509 LGIRHIGQKAAKTLAEHISSIDDLFTITE----------EQLLSLPDFGEKMAKSVVTFF 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + +E L ++ + ++ V TG L K R++A+E + LGA Sbjct: 559 KQEQTRHLIERLKAAGVNTVSEKKAKSD-ILKGYTFVLTGALSKYSRNEAKEILESLGAK 617 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V+ +S+KT +IVG +PGSK KAQQLGVKI+NEE F L++ Sbjct: 618 VTESVSKKTTAVIVGQDPGSKYTKAQQLGVKILNEEDFERLVK 660 >gi|257882881|ref|ZP_05662534.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,502] gi|257818539|gb|EEV45867.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,502] Length = 674 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 236/715 (33%), Positives = 388/715 (54%), Gaps = 53/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I++A K L ++ YY KP + D YD AI +PDL S Sbjct: 1 MTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ KVTH IP SL +++ E+L F R+ + + + + E Sbjct: 58 DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRV----VDYCCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG GE+++ ++ + ++P L + IEVRGE Sbjct: 114 LKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKEPMN--IEVRGEC 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 ++ K F+ LN + A G+ +ANPRNAA+G LR+L+ R L+ F++ + + Sbjct: 172 FMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPMQ 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 AK QY+ L+++ +GF N R ++ + SY E R LPY+IDG+V KV+EFS Sbjct: 232 AKTQYDALEELEKIGFHTNREKRLCHSIDEVWSYIEEYHDKRVDLPYEIDGIVIKVNEFS 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ QLG ++PRW ++KF ++ T + +I+ +GRTG++TP A + PV + G ++ Sbjct: 292 LQDQLGFTIKAPRWAAAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVSR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN DYIK +DIR+ D VL+ +AG++IP+V +++++R D++ + Sbjct: 352 ASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQL 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S +V A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 401 PTHCPVCGSELVHLDEE------VALRCINPK-CPAQMKEGLNHFVSRNAMNIDGLGPRV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L+ + + + AD++ L + + + + S N+ +I+ ++ S+ Sbjct: 454 LEQMYDKK----LVADVADLYKLTEEELLT------LDKIKEKSANNILTAIDNSKDNSV 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER IF LGIRHVGA+ A+ LA+++ + ++ D+ S+I + +GDIIA Sbjct: 504 ERLIFGLGIRHVGAKAAKILAEHFGDLETLSKS----------DYESIIALDTIGDIIAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + L + + + V S + K +V TG L + R + Sbjct: 554 SVVTYFSNEEVHELMNELKQAGVNFEYKGLRNAQLQEVESPFKEKTVVLTGKLTRFTREE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+E + LG V+ +S+KTDI++ G++ GSKL KAQ+LG+++ E+Q L + Sbjct: 614 AKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMADALAK 668 >gi|262280095|ref|ZP_06057880.1| DNA ligase [Acinetobacter calcoaceticus RUH2202] gi|262260446|gb|EEY79179.1| DNA ligase [Acinetobacter calcoaceticus RUH2202] Length = 692 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 255/720 (35%), Positives = 379/720 (52%), Gaps = 47/720 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ +++ L Q I+ H+ YY +P I DSEYD L + A+ +P+ +S Sbjct: 14 MATTSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEQVQS--- 70 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+GG+ VTH +P LSL ++N EDL F R+ + + + +E Sbjct: 71 DSPTTKVGGQALSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVEERL---PNQKVQYEVE 127 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188 K+DG I++ YE G + RGDG +GED++ ++ I +P+VL + EI +EVR Sbjct: 128 LKLDGLAISLWYENGVLIRGVTRGDGETGEDITQNVKTIRNLPKVLHSDHFEIPRLLEVR 187 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247 GEV + K+ F LN + A G K +ANPRNAA+G LR+L+P F+ +G+ + Sbjct: 188 GEVLMPKSGFEKLNADQEAKGDKTFANPRNAAAGSLRQLDPNIAAGRPLAFYAYGIAQCE 247 Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ LQ + LGF + N+ + Y +++ R L +IDG+V KV Sbjct: 248 PNHGLITMHDSLQWLTQLGFEIAERQYLCNSIQEVQQRYEQIQQERPDLQVEIDGMVVKV 307 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q+QLG +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG Sbjct: 308 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGV 367 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++N TLHN I L D+RVGD V V R G+VIPKV + R PDA+ Sbjct: 368 TVSNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWPEFRSPDAE 416 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C S VV A RC+GGL C+AQ++E ++HFVSR A +IEGL Sbjct: 417 IVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKALDIEGL 470 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ ++ ADI+ L ++ + I G+ SV NL D+I + Sbjct: 471 GDRWVESLLH----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASK 522 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI++LGIR VG AR LA + + + D +L + P VGD Sbjct: 523 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA----------DVEALKKTPDVGD 572 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I A+ I +F+ P NI ++ L+ + + V TGTL+++ R +A Sbjct: 573 ITAEWIADFFLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 631 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 + + LGA VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y TL Sbjct: 632 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIIVMNETDFLSLMASYGQTLS 691 >gi|262369277|ref|ZP_06062605.1| DNA ligase [Acinetobacter johnsonii SH046] gi|262315345|gb|EEY96384.1| DNA ligase [Acinetobacter johnsonii SH046] Length = 679 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 249/709 (35%), Positives = 376/709 (53%), Gaps = 47/709 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++ L Q ++ H+ YY +P I DSEYD L + A+ +P+ + P+ P+NK+ Sbjct: 9 AQMRQLIQILAQHNHAYYVMDQPTIADSEYDQLFHQLKALEEQYPEYIQ---PDSPINKV 65 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG+ VTH +P LSL ++N E+L F R + +I + +E K DG Sbjct: 66 GGKPLAKFTSVTHVVPMLSLGNVFNQEELFAFARRAEERL---PNQTIQYDVELKFDGLA 122 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRGEVYISK 195 I++ YE+G V RGDG +GED++ ++ I +P+VL +P ++EVRGEV + K Sbjct: 123 ISLWYEQGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLSTDQGEVPTLLEVRGEVLMPK 182 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAKGQ 254 F LN E A G K +ANPRNAA+G LR+L+P F+ +G+ + + Sbjct: 183 AGFEKLNAENEAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCEPNHGQST 242 Query: 255 YEML-QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 + ++ GF V ++ + + Y ++ + R L +IDG+V KV+ Q+ Sbjct: 243 MSESLEWLQQFGFAVGERHFVCDSIQEVQAVYEQINAERPQLSVEIDGMVIKVNSLKQQQ 302 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 QLG +R PRW ++KF A T + +ID Q+GRTG LTPVARL PV +GG ++N TL Sbjct: 303 QLGFLSREPRWATAYKFPAVAALTTVENIDWQVGRTGTLTPVARLNPVAVGGVTVSNVTL 362 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN I L D+R+GD V V R+G+VIPKV + R DA PS Sbjct: 363 HNIGEIHRL-----------DVRIGDTVSVYRSGDVIPKVEKVWPEFRPVDATEVELPSQ 411 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C+S VV A RC+GGL C+AQ++E ++HFVSR A +IEGLG + ++ Sbjct: 412 CPVCESPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKALDIEGLGDRWVES 465 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ ADI+ L ++ K+ I G+ SV NL DSI + +L F Sbjct: 466 LLH----LDLLKDVADIYHLHEHRE----KLLTIEKMGEKSVQNLIDSIENSKKTTLAAF 517 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I++LGIR VG AR LA + + D +L + P VGDI A+ IV Sbjct: 518 IYALGIRGVGETTARMLANTFQTLDALRVA----------DIDALKKTPDVGDITAEWIV 567 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +F+Q P N+ ++ LL + + V TGTL + R +A + + L Sbjct: 568 DFFQAPHNLEVLDRLLAAG-IHWDAPVAPSRQPLNGESWVVTGTLSTMGRDEATQLLQAL 626 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 GA VS +S KT ++ G+ GSKL+KA++LG+ ++NE +F+ L++ Y Sbjct: 627 GARVSGSVSSKTKCVVAGEKAGSKLDKAEKLGIAVINEAEFIQLMKDYG 675 >gi|49479078|ref|YP_034626.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118476055|ref|YP_893206.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis str. Al Hakam] gi|225862344|ref|YP_002747722.1| DNA ligase, NAD-dependent [Bacillus cereus 03BB102] gi|229182688|ref|ZP_04309929.1| DNA ligase [Bacillus cereus BGSC 6E1] gi|81397398|sp|Q6HP94|DNLJ_BACHK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215395|sp|A0R906|DNLJ_BACAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781551|sp|C1EV74|DNLJ_BACC3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|49330634|gb|AAT61280.1| DNA ligase(NAD+) (NAD-dependent DNA ligase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118415280|gb|ABK83699.1| NAD-dependent DNA ligase [Bacillus thuringiensis str. Al Hakam] gi|225789655|gb|ACO29872.1| DNA ligase (NAD(+)) [Bacillus cereus 03BB102] gi|228600773|gb|EEK58352.1| DNA ligase [Bacillus cereus BGSC 6E1] Length = 669 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q DD ++ + E Sbjct: 58 DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD+++L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|312877316|ref|ZP_07737282.1| DNA ligase, NAD-dependent [Caldicellulosiruptor lactoaceticus 6A] gi|311795879|gb|EFR12242.1| DNA ligase, NAD-dependent [Caldicellulosiruptor lactoaceticus 6A] Length = 673 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 238/703 (33%), Positives = 378/703 (53%), Gaps = 47/703 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 +K + L I+YHD YY P I D EYD L R + +P+ P+ P Sbjct: 5 IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQ 61 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ +V H +P LSL ++N +L F R+ ++ + +E KIDG Sbjct: 62 RVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLG---TSNFDYVVEYKIDG 118 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + + YE G FV A RGDG+ GEDV+ ++ I +IP L +I I VRGEV++ K+ Sbjct: 119 LSVALEYENGLFVRGATRGDGNVGEDVTENLKTIRSIPLRLKEDIS--IVVRGEVFMPKD 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 +F+ LN E +ANPRNAA+G LR+L+P + + E + E Sbjct: 177 EFIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNVQWCEKEIETHAE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ ++ LGF V+ +++ R LP++IDG V K+++ L+ G Sbjct: 237 ALEFLKRLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW +++KF ++ T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN Sbjct: 297 ATAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI+ +DIR+GD V+V++A E+IP+VV+++ ++R + F P CP+ Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + V++ + A+RCTG C A+ + HFVSRDA +I G+G+ + F+ Sbjct: 406 CGADVIKFEDE------VAYRCTGV-ECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFE 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ PADI+ L+ + + FG S NL +I +N L+R I++ Sbjct: 459 R----GLIKTPADIYYLKFEDLVN------LERFGVKSTNNLLKAIQASKNRPLDRLIYA 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRH+G + A++LA++ S + L+ +P G+ +A+++V F+ Sbjct: 509 LGIRHIGQKAAKTLAEHISSIDDLFTITE----------DQLLSLPDFGEKMAKSVVTFF 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + +E L ++ + ++ V TG L K R++A+E + LGA Sbjct: 559 RQEQTRHLIERLKAAGVNTVSEKKAKSD-ILKGYTFVLTGALSKYSRNEAKEILESLGAK 617 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V+ +S+KT +IVG +PGSK KAQQLGVKI+NEE F L++ Sbjct: 618 VTESVSKKTTAVIVGQDPGSKFTKAQQLGVKILNEEDFEKLVK 660 >gi|300118925|ref|ZP_07056636.1| NAD-dependent DNA ligase LigA [Bacillus cereus SJ1] gi|298723541|gb|EFI64272.1| NAD-dependent DNA ligase LigA [Bacillus cereus SJ1] Length = 669 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q DD ++ + E Sbjct: 58 DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSESLDYLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD+++L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|254724765|ref|ZP_05186548.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. A1055] Length = 669 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q+ DD ++ + E Sbjct: 58 DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QEIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSESLDYLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGGEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD+++L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|196040110|ref|ZP_03107412.1| DNA ligase (NAD(+)) [Bacillus cereus NVH0597-99] gi|196028965|gb|EDX67570.1| DNA ligase (NAD(+)) [Bacillus cereus NVH0597-99] Length = 669 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 247/715 (34%), Positives = 387/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q DD ++ + E Sbjct: 58 DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGGEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD+++L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|30260478|ref|NP_842855.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Ames] gi|49183320|ref|YP_026572.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Sterne] gi|50196911|ref|YP_052606.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. 'Ames Ancestor'] gi|65317730|ref|ZP_00390689.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Bacillus anthracis str. A2012] gi|165871348|ref|ZP_02215996.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0488] gi|167634237|ref|ZP_02392559.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0442] gi|167640082|ref|ZP_02398349.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0193] gi|170688355|ref|ZP_02879564.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0465] gi|170708762|ref|ZP_02899199.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0389] gi|177653653|ref|ZP_02935792.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0174] gi|190567340|ref|ZP_03020254.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I] gi|190567489|ref|ZP_03020402.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I] gi|196034623|ref|ZP_03102031.1| DNA ligase, NAD-dependent [Bacillus cereus W] gi|227812970|ref|YP_002812979.1| DNA ligase, NAD-dependent [Bacillus anthracis str. CDC 684] gi|228913034|ref|ZP_04076673.1| DNA ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925550|ref|ZP_04088639.1| DNA ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228944102|ref|ZP_04106481.1| DNA ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229119952|ref|ZP_04249207.1| DNA ligase [Bacillus cereus 95/8201] gi|229604913|ref|YP_002864923.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0248] gi|254686689|ref|ZP_05150547.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. CNEVA-9066] gi|254739086|ref|ZP_05196788.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Western North America USA6153] gi|254742292|ref|ZP_05199978.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Kruger B] gi|254756068|ref|ZP_05208097.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Vollum] gi|254761885|ref|ZP_05213734.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Australia 94] gi|81584374|sp|Q81ZG1|DNLJ_BACAN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781547|sp|C3PBP1|DNLJ_BACAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781548|sp|C3L543|DNLJ_BACAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|30253846|gb|AAP24341.1| DNA ligase (NAD(+)) [Bacillus anthracis str. Ames] gi|49177247|gb|AAT52623.1| DNA ligase, NAD-dependent [Bacillus anthracis str. Sterne] gi|50082973|gb|AAT70114.1| DNA ligase, NAD-dependent [Bacillus anthracis str. 'Ames Ancestor'] gi|164712832|gb|EDR18361.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0488] gi|167511893|gb|EDR87272.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0193] gi|167530551|gb|EDR93266.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0442] gi|170126341|gb|EDS95231.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0389] gi|170667687|gb|EDT18441.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0465] gi|172081233|gb|EDT66308.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0174] gi|190561276|gb|EDV15248.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I] gi|190561467|gb|EDV15438.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I] gi|195992666|gb|EDX56626.1| DNA ligase, NAD-dependent [Bacillus cereus W] gi|227002604|gb|ACP12347.1| DNA ligase (NAD(+)) [Bacillus anthracis str. CDC 684] gi|228663418|gb|EEL19003.1| DNA ligase [Bacillus cereus 95/8201] gi|228815491|gb|EEM61733.1| DNA ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228834028|gb|EEM79576.1| DNA ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846439|gb|EEM91452.1| DNA ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229269321|gb|ACQ50958.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0248] Length = 669 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 247/715 (34%), Positives = 387/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q DD ++ + E Sbjct: 58 DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSESLDYLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGGEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD+++L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|21673293|ref|NP_661358.1| DNA ligase, NAD-dependent [Chlorobium tepidum TLS] gi|81791793|sp|Q8KF74|DNLJ_CHLTE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|21646383|gb|AAM71700.1| DNA ligase, NAD-dependent [Chlorobium tepidum TLS] Length = 674 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 228/716 (31%), Positives = 370/716 (51%), Gaps = 51/716 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + +A++E+ L EI H+ YY +KP I D E+D L +R + FP+L P Sbjct: 1 MDKAKAQQEIGKLRAEIERHNRLYYLEAKPEISDFEFDKLLKRLIMLEKEFPELV---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + V H P LSL ++I ++ F R+ + + + + E Sbjct: 58 DSPSQRVGGGITKEFPTVVHRDPMLSLSNTYSIAEVADFCNRVEKLVAAEGGGTPEYVAE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI--------PE 183 K DG I++ Y G V + RGDG G++++A +R IP+IP L + Sbjct: 118 LKYDGVAISLLYRDGLLVCGSTRGDGRQGDEITANLRTIPSIPLRLEMPDLPLFGTALSG 177 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243 IEVRGEVY+ K+DF LN+E + +ANPRNA +G L+ + ++ R FV Sbjct: 178 EIEVRGEVYMRKDDFERLNEERPE--EERFANPRNATAGTLKLQDSAEVARRRMSFVAYY 235 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 K + A + L++++ +GF + I + E R TLPY+ DG+V Sbjct: 236 LKGYDGEAPTHLKRLEQLKSMGFMTGAAAKLCKGMDEIADFIAEWSEKRWTLPYETDGVV 295 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 K++E SL ++LG A+SPRW I++K+ +QA T L + Q+GR G +TPVA L+P + Sbjct: 296 LKLNEVSLWERLGATAKSPRWAIAYKYPAQQAKTVLQGVVFQVGRLGTITPVAELKPTRL 355 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G++++ +TLHN D IK L +R+GD V+++++GEVIPKVV ++++ER Sbjct: 356 AGSIVSRSTLHNFDEIKRL-----------GVRIGDHVMIEKSGEVIPKVVSVVLDERPA 404 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + PS CP+C +R+ R C C AQ+ R+ HF SR+A +I Sbjct: 405 ETAEIEVPSECPVCGTRLERPEGE------VNWYCPNEEGCPAQKRGRILHFASRNALDI 458 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 + LG+ + + D+++L + Q + S N+ D++ Sbjct: 459 QNLGESLVTQLVDR----GLVSDAGDLYSLTQEQLAG------LDRMAAKSAQNVLDALE 508 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K + S R +F+LGIRHVGA AR LA S + D +L VP Sbjct: 509 KSKKQSYARLLFALGIRHVGAATARELAHACPSIDRLRE----------MDEEALAAVPD 558 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQ 662 +G +IA +I +F+ P ++ L + P EK V++ E + ++FTG L++ Sbjct: 559 IGPVIAASIRDFFAKPWVQAMLQKLAEAGLPMQAGEEKALVNNNFEGQSVIFTGALERHV 618 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+E V + G + + +S+KT +++ G GSKLEKA +LGVK+++E++F +L Sbjct: 619 RQEAEEMVRERGGRIVSSVSKKTTLVVAGKEAGSKLEKAIKLGVKVIDEDEFERML 674 >gi|312793814|ref|YP_004026737.1| DNA ligase, nad-dependent [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180954|gb|ADQ41124.1| DNA ligase, NAD-dependent [Caldicellulosiruptor kristjanssonii 177R1B] Length = 673 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 238/703 (33%), Positives = 378/703 (53%), Gaps = 47/703 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 +K + L I+YHD YY P I D EYD L R + +P+ P+ P Sbjct: 5 IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQ 61 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ +V H +P LSL ++N +L F R+ ++ + +E KIDG Sbjct: 62 RVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLG---TSNFDYVVEYKIDG 118 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + + YE G FV A RGDG+ GEDV+ ++ I +IP L +I I VRGEV++ K+ Sbjct: 119 LSVALEYENGLFVRGATRGDGNVGEDVTENLKTIRSIPLRLKEDIS--IVVRGEVFMPKD 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 +F+ LN E +ANPRNAA+G LR+L+P + + E + E Sbjct: 177 EFIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNVQWCEKEIETHAE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ ++ LGF V+ +++ R LP++IDG V K+++ L+ G Sbjct: 237 ALEFLKHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW +++KF ++ T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN Sbjct: 297 ATAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI+ +DIR+GD V+V++A E+IP+VV+++ ++R + F P CP+ Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + V++ + A+RCTG C A+ + HFVSRDA +I G+G+ + F+ Sbjct: 406 CGADVIKFEDE------VAYRCTGV-ECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFE 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ PADI+ L+ + + FG S NL +I +N L+R I++ Sbjct: 459 R----GLIKTPADIYYLKFEDLVN------LERFGVKSTNNLLKAIQASKNRPLDRLIYA 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRH+G + A++LA++ S + L+ +P G+ +A+++V F+ Sbjct: 509 LGIRHIGQKAAKTLAEHISSIDDLFTITE----------DQLLSLPDFGEKMAKSVVTFF 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + +E L ++ + ++ V TG L K R++A+E + LGA Sbjct: 559 RQEQTRHLIERLKAAGVNTVSEKKAKSD-ILKGYTFVLTGALSKYSRNEAKEILESLGAK 617 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V+ +S+KT +IVG +PGSK KAQQLGVKI+NEE F L++ Sbjct: 618 VTESVSKKTTAVIVGQDPGSKFTKAQQLGVKILNEEDFEKLVK 660 >gi|325110927|ref|YP_004271995.1| DNA ligase [Planctomyces brasiliensis DSM 5305] gi|324971195|gb|ADY61973.1| DNA ligase [Planctomyces brasiliensis DSM 5305] Length = 675 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 227/711 (31%), Positives = 363/711 (51%), Gaps = 49/711 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 +E++SL EI H+ YY ++P I D E+D L R + P+ + P+ P Sbjct: 5 VAQEIASLRDEIERHNRLYYVEAQPEITDREFDRLLNRLIDLEQQHPEF---QSPDSPTQ 61 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 K+GG+ V H++P LS+E ++ E + +F RI + ++ ++ +T+E KIDG Sbjct: 62 KVGGQPIEGFQTVPHAVPMLSIENVFEPEGIDEFDRRICKLLDRE---TLDYTIEYKIDG 118 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195 + + YE G+ + A RGDG G+D+++ R +P L+ N PE++EVRGE YI+ Sbjct: 119 VALALVYEHGRLIRAVTRGDGQQGDDITSNARTARGVPLKLAGDNPPELLEVRGEAYIAN 178 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 +DF L E A G +ANPRN+ +G L+ L+P R + F HG+G S Sbjct: 179 SDFAVLRAEQEARGETVFANPRNSTAGALKLLDPKLSAQRKVRFVSHGIGAHSNFGVDTH 238 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 ++ ++K+R G P G+R + + M TL ++DGLV KV+ +L+++ Sbjct: 239 FDYIEKLREFGLPTTPGIRVCHGIQEVREQIEMMMDDLHTLDLEVDGLVIKVNSLALREE 298 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++SPRW+I++K+ +A+TR+ DI IQ+G+TG LTPVA L PV I G +T ++LH Sbjct: 299 LGNTSKSPRWVIAYKWERYEATTRVEDIQIQVGKTGTLTPVAYLAPVEIAGTTVTRSSLH 358 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D ++ L DIR+GD +V++AG++IP V+ + R Q F FP+ C Sbjct: 359 NRDELQRL-----------DIRIGDYAVVEKAGKIIPHVLRVERERRDGSEQEFHFPTQC 407 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P CQ+ VV+D + C A+ E L+ F SR A +I+GLG + ++ Sbjct: 408 PECQTEVVQDEGGVYIR-------CPNPDCPARLRESLRFFASRQAMDIDGLGIKLIEQL 460 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 A + ADI+ L R+ ++ + G+ SV + I + + L R + Sbjct: 461 VD----AGLLTSLADIYRLPERRD----EMLALDRMGEKSVDKVLKGIERSKEQPLWRLL 512 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 L IRHVG AR LA+ + S + +L V +G +IA+++ E Sbjct: 513 TGLNIRHVGTSNARILAERFGSLGQLQE----------QSAENLAAVNEIGPVIAESVYE 562 Query: 615 FYQNPRNICAVEALLKEVSP-----SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 F + V L + E+ K V TGTL+ R +A+E Sbjct: 563 FLHSDFGATLVNQLADLGLNLGTAKQVSPEEEGAELPWAGKTFVLTGTLETFTRQQAEEE 622 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G S +S+KT ++ G GSKLEKA++LG+ I+ E F +L++ Sbjct: 623 IRVRGGKASGSVSKKTSFVVAGAEAGSKLEKAEKLGISILTEADFTQMLEE 673 >gi|218901495|ref|YP_002449329.1| DNA ligase, NAD-dependent [Bacillus cereus AH820] gi|254781549|sp|B7JM96|DNLJ_BACC0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218535434|gb|ACK87832.1| DNA ligase, NAD-dependent [Bacillus cereus AH820] Length = 669 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 246/715 (34%), Positives = 387/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q DD ++ + E Sbjct: 58 DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSESLDYLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+V+++I ++R + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVINVIFDKRTGGEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD+++L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|172056504|ref|YP_001812964.1| DNA ligase, NAD-dependent [Exiguobacterium sibiricum 255-15] gi|254781332|sp|B1YJ17|DNLJ_EXIS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|171989025|gb|ACB59947.1| DNA ligase, NAD-dependent [Exiguobacterium sibiricum 255-15] Length = 664 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 244/708 (34%), Positives = 392/708 (55%), Gaps = 51/708 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L Q+++ + YY +P + DS YD L R + A P+L P+ P + Sbjct: 4 QARIEELRQKLNQYSYEYYVQDQPTVPDSTYDQLLRELTELETAHPELI---TPDSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + KVTH +P LSL +++ ++R+++ RI R + S + E K DG Sbjct: 61 VGAAALDAFEKVTHDLPMLSLGNVFDETEIREWVARIERSLGR----STTYVAELKFDGL 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I+++YE G+ V A RGDG GE+++ +R I +P L L E +EVRGE Y+ K Sbjct: 117 AISLKYEDGQLVRGATRGDGTVGENITQNLRTIKALP--LRLRRNETVEVRGEAYMPKQS 174 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN + A +ANPRNAA+G LR+L+ + +R L+ FV+G+G + + A+ E Sbjct: 175 FERLNADRAAREEALFANPRNAAAGSLRQLDSSITASRNLSLFVYGVG-VNTLSARSHSE 233 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + ++ LG P N ++ T I++Y RS LPY+IDG+V KVD + Q++LG Sbjct: 234 AMLQLAELGLPTNKEMQTCETVEEILAYIAHWTMERSNLPYEIDGIVLKVDRYDDQEELG 293 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPR+ ++KFA ++ T + ++D +GRTG +TP AR PV + G+ ++ ATLHN Sbjct: 294 FTAKSPRFATAYKFAAEEVMTTVEEVDFSVGRTGKVTPRARFAPVVVAGSTVSYATLHNA 353 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+I +DIR+ D+V++K+AG+VIP VV ++V+ER + QP FP+ CP Sbjct: 354 DFI-----------TEKDIRLHDQVIIKKAGDVIPAVVSVVVSERTGNEQPIEFPAHCPA 402 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C+S +VR A RC C AQ +E + HFVSR A NI+GLG++ + ++ Sbjct: 403 CESELVRLEGE------ADIRCVSP-ECPAQLVEGIIHFVSRQAMNIDGLGEKVVRQLYE 455 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 E IR AD++ L R + + G+ SV NL +I + SLER +F Sbjct: 456 HEA----IRTLADLYRLDRDELLTY------ERMGETSVDNLLTAIEASKQNSLERLMFG 505 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG + A LA+ + S AQ ++ ++ + +G IA ++ +++ Sbjct: 506 LGIRLVGQKAAYLLAERFDSLDGIAQA----------EYEDILAIDGIGSKIADSVTKYF 555 Query: 617 QNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 ++P ++ L + +G+ ++ + K +V TGTL+ ++R +A + + LG Sbjct: 556 EHPEAQALIKDLAELGLNQQFLGQRVDQSNAPLAGKTIVLTGTLESLKRSEAGKRLELLG 615 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A V+ +S+KTDI++ G+ GSKL KA+ LG++I NE Q L L +Y Sbjct: 616 ADVTGSVSKKTDILVAGEKAGSKLTKAESLGIEIWNETQLLEELAKYE 663 >gi|284053772|ref|ZP_06383982.1| NAD-dependent DNA ligase LigA [Arthrospira platensis str. Paraca] Length = 683 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 212/713 (29%), Positives = 353/713 (49%), Gaps = 47/713 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++L+ L + YY PI+ D YD L R + + +P+L P+ P Sbjct: 11 EISQKLAQLRLTVQRASYAYYVLDAPIMEDGVYDRLYRELQELENQYPELI---SPDSPT 67 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G + VTH+IP SLE +N+ +L+ + + RF + E KID Sbjct: 68 QRVGEKPAAQFQSVTHNIPLYSLENAFNMAELQAWDEKWRRFLGDSLPQDPKYICELKID 127 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYIS 194 G+ I + Y G V RGDG +GED++ ++ I +IP L N P ++EVRGE ++S Sbjct: 128 GSAIALTYHNGILVRGVTRGDGVTGEDITQNVKTIRSIPLKLHLDNPPPVVEVRGEAFLS 187 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 + F+ +N E G +ANPRNAA+G LR+L+P + F Sbjct: 188 NHIFVQINQERQQTGEPLFANPRNAAAGTLRQLDPRIVADRRLDFFAYTLHLDSPNLHDH 247 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 ++ L+ ++ +GF VN + + + Y++ + R LPY DG+V K++ SLQKQ Sbjct: 248 WDCLEFLQKMGFKVNPNRQLCQSLLEVQQYFDAWDTQRQQLPYMTDGVVVKLNSLSLQKQ 307 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LGE + PRW I+ K+ ++ T+++ + Q+GRTG LTPVA LEP+ + G + ATLH Sbjct: 308 LGETRKFPRWAIALKYPAEELPTKIISVTFQVGRTGALTPVAELEPIQLAGTTVKRATLH 367 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N+D + L D+ +GD V+V++AGE+IP+VV ++ + R A+ + P+ C Sbjct: 368 NQDRLTEL-----------DLHIGDTVIVRKAGEIIPEVVRVLPDLRPTGAKLVTMPTHC 416 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C V++ A RC +C A + H+ R A +I G+G++ + Sbjct: 417 PECGETVIKTPAE------AVTRCINS-SCPAIVRGSIIHWCQRPALDINGIGEKLVHQL 469 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 ++ +R AD++ L Q + + G+ S + +I + R + Sbjct: 470 VDAQ----LVRSVADLYDLNMDQ------LLELDRMGEKSAQKILAAIATSKQQPWHRVL 519 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + LGIRHVG A LA+ + S Q+ A + + V +G IA ++ + Sbjct: 520 YGLGIRHVGKANADLLAQNFPSCQSLAAASSA----------QIEGVYGIGAEIATSVYQ 569 Query: 615 FYQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++QNP NI + L + PS + K V TGTL + R +A+ Sbjct: 570 WFQNPANISLCDRLQQAGLQLTSVPSTAPKSTPQAQPFAGKTFVLTGTLPTLSRDQAKSM 629 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + G V+ +++K D +++G+ PGSKL+KAQ L + ++E FL +++ N Sbjct: 630 IENAGGKVTNSVTKKVDYLLLGEKPGSKLKKAQDLAIANLSESDFLAMIKSAN 682 >gi|237745525|ref|ZP_04576005.1| DNA ligase [Oxalobacter formigenes HOxBLS] gi|229376876|gb|EEO26967.1| DNA ligase [Oxalobacter formigenes HOxBLS] Length = 685 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 256/711 (36%), Positives = 396/711 (55%), Gaps = 49/711 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + + L EI ++ YY P++ D+EYD + R + A+P+L P P Sbjct: 13 DTPESRAAKLRSEIERYNYAYYVLDAPVVPDAEYDRVFRELQELEAAYPELVV---PGSP 69 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG KV H +P LSL+ E++ F R+ + + E K Sbjct: 70 TQRVGGAPLAQFDKVEHRLPMLSLQNGLTDEEVEAFDRRLGEELGIA---QVEYEAELKF 126 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193 DG +++RYEKG V AA RGDG SGE+++A IR I ++P LS PE++EVRGEV + Sbjct: 127 DGLAVSLRYEKGVLVQAATRGDGMSGENITANIRTIRSVPLHLSELAPPEVLEVRGEVLM 186 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIF-A 251 K DF LN G+K + NPRNAA+G LR+L+ +R L FF +G+G+ Sbjct: 187 FKKDFQDLNRRQRESGQKEFVNPRNAAAGSLRQLDSQITASRQLKFFAYGIGELDGAPLP 246 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + Q +L LG PV + F G++ ++ +++ R LPY+IDG+VYKV+ S Sbjct: 247 ETQNRLLNWFVQLGIPVCEERKVVRGFKGLMGFFQAIEARRDALPYEIDGVVYKVNRLSE 306 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PR+ ++HKF ++ T + DI++Q+GRTG +TPVARL+PV +GG +TNA Sbjct: 307 QQKLGFISRAPRFALAHKFPAQEVLTEVTDINVQVGRTGAITPVARLKPVFVGGVTVTNA 366 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHNED ++ +D+R+GD V+V+RAG+VIP+V+ + +R DA+ F P Sbjct: 367 TLHNEDEVRR-----------KDVRIGDTVIVRRAGDVIPEVIASVPEKRPADAREFVMP 415 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 + CP+C S +VR + A RC+G + C+AQ+ L+ F SR A NIEGLG+Q Sbjct: 416 ALCPVCGSPIVRPEDE------AIARCSGGWIKCAAQKKGGLQLFASRKAMNIEGLGEQL 469 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + I AD++ L + + D S +NL D + + R +L Sbjct: 470 IDQLVDRQ----IINDAADLYRLDLETLSG------LDRMADKSASNLLDELGRSRETTL 519 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIRHVG ARSLA+++ + Q+ L+ V +G ++A Sbjct: 520 SRFLYALGIRHVGETTARSLAEHFGNLQDLMNATE----------EQLLEVDDIGPVVAL 569 Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 +I +F+ + RN + L + P EK + ++++K V TGTL + R A E Sbjct: 570 SIRQFFDDVRNRELIGKLQNDGVHWPERAMKEKPPALPLQDRKFVLTGTLSSLTREAAAE 629 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LG VS +S+KTD ++ G PGSKL KAQ+LG++I++EE F+ L++ Sbjct: 630 IIRNLGGKVSNSVSKKTDYVLAGSEPGSKLAKAQELGIRILDEEAFVQLVK 680 >gi|293569137|ref|ZP_06680444.1| DNA ligase, NAD-dependent [Enterococcus faecium E1071] gi|291588184|gb|EFF20025.1| DNA ligase, NAD-dependent [Enterococcus faecium E1071] Length = 679 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 237/716 (33%), Positives = 389/716 (54%), Gaps = 53/716 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ++I++A K L ++ YY KP + D YD AI +PDL S Sbjct: 5 EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 62 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++GG++ KVTH IP SL +++ E+L F R+ + + + + Sbjct: 63 -DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRV----VDYCC 117 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++RYE G FV A RGDG GE+++ ++ + ++P L + IEVRGE Sbjct: 118 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKEPMN--IEVRGE 175 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 ++ K F+ LN + A G+ +ANPRNAA+G LR+L+ R L+ F++ + + Sbjct: 176 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPM 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 AK QY+ L+++ +GF N R ++ + SY E R LPY+IDG+V KV+EF Sbjct: 236 QAKTQYDALEELEKIGFHTNREKRLCHSIDEVWSYIEEYHDKRVDLPYEIDGIVIKVNEF 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ QLG ++PRW ++KF ++ T + +I+ +GRTG++TP A + PV + G ++ Sbjct: 296 SLQDQLGFTVKAPRWAAAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DYIK +DIR+ D VL+ +AG++IP+V +++++R D++ + Sbjct: 356 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 404 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S +V A RC C AQ E LKHFVSR+A NI+GLG + Sbjct: 405 LPTHCPVCGSELVHLDEE------VALRCINPK-CPAQMKEGLKHFVSRNAMNIDGLGPR 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ + + + AD++ L + + + + S N+ +I+ ++ S Sbjct: 458 VLEQMYDKK----LVADVADLYKLTEEELLT------LDKIKEKSANNILTAIDNSKDNS 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +ER IF LGIRHVGA+ A+ LA+++ + ++ D+ S+I + +GDIIA Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSKS----------DYESIIALDTIGDIIA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664 ++V ++ N + L + + + V S + K +V TG L + R Sbjct: 558 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRNAQLQEVESPFKEKTVVLTGKLTRFTRE 617 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +A+E + LG V+ +S+KTDI++ G++ GSKL KAQ+LG+++ E+Q L + Sbjct: 618 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMADALAK 673 >gi|257878462|ref|ZP_05658115.1| NAD-dependent DNA ligase [Enterococcus faecium 1,230,933] gi|257889341|ref|ZP_05668994.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,410] gi|257894353|ref|ZP_05674006.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,408] gi|258616016|ref|ZP_05713786.1| DNA ligase, NAD-dependent [Enterococcus faecium DO] gi|257812690|gb|EEV41448.1| NAD-dependent DNA ligase [Enterococcus faecium 1,230,933] gi|257825701|gb|EEV52327.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,410] gi|257830732|gb|EEV57339.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,408] Length = 678 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 236/716 (32%), Positives = 388/716 (54%), Gaps = 53/716 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ++I++A K L ++ YY KP + D YD AI +PDL S Sbjct: 4 EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 61 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++GG++ KVTH IP SL +++ E+L F R+ + + + + Sbjct: 62 -DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRV----VDYCC 116 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++RYE G FV A RGDG GE+++ ++ + ++P L + IEVRGE Sbjct: 117 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKEPMN--IEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 ++ K F+ LN + A G+ +ANPRNAA+G LR+L+ R L+ F++ + + Sbjct: 175 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPM 234 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 AK QY+ L+++ +GF N R ++ + SY E R LPY+IDG+V KV+EF Sbjct: 235 QAKTQYDALEELEKIGFHTNREKRLCHSIDEVWSYIEEYHDKRVDLPYEIDGIVIKVNEF 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ QLG ++PRW ++KF ++ T + +I+ +GRTG++TP A + PV + G ++ Sbjct: 295 SLQDQLGFTIKAPRWAAAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DYIK +DIR+ D VL+ +AG++IP+V +++++R D++ + Sbjct: 355 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S +V A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 404 LPTHCPVCGSELVHLDEE------VALRCINPK-CPAQMKEGLNHFVSRNAMNIDGLGPR 456 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ + + + AD++ L + + + + S N+ +I+ ++ S Sbjct: 457 VLEQMYDKK----LVADVADLYKLTEEELLT------LDKIKEKSANNILTAIDNSKDNS 506 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +ER IF LGIRHVGA+ A+ LA+++ + ++ D+ S+I + +GDIIA Sbjct: 507 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSKS----------DYESIIALDTIGDIIA 556 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664 ++V ++ N + L + + + V S + K +V TG L + R Sbjct: 557 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRNAQLQEVESPFKEKTVVLTGKLTRFTRE 616 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +A+E + LG V+ +S+KTDI++ G++ GSKL KAQ+LG+++ E+Q L + Sbjct: 617 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMADALAK 672 >gi|261207462|ref|ZP_05922148.1| NAD-dependent DNA ligase [Enterococcus faecium TC 6] gi|289565873|ref|ZP_06446314.1| DNA ligase, NAD-dependent [Enterococcus faecium D344SRF] gi|294618097|ref|ZP_06697694.1| DNA ligase, NAD-dependent [Enterococcus faecium E1679] gi|260078353|gb|EEW66058.1| NAD-dependent DNA ligase [Enterococcus faecium TC 6] gi|289162333|gb|EFD10192.1| DNA ligase, NAD-dependent [Enterococcus faecium D344SRF] gi|291595669|gb|EFF26965.1| DNA ligase, NAD-dependent [Enterococcus faecium E1679] Length = 679 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 236/716 (32%), Positives = 388/716 (54%), Gaps = 53/716 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ++I++A K L ++ YY KP + D YD AI +PDL S Sbjct: 5 EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 62 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++GG++ KVTH IP SL +++ E+L F R+ + + + + Sbjct: 63 -DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRV----VDYCC 117 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++RYE G FV A RGDG GE+++ ++ + ++P L + IEVRGE Sbjct: 118 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKEPMN--IEVRGE 175 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 ++ K F+ LN + A G+ +ANPRNAA+G LR+L+ R L+ F++ + + Sbjct: 176 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPM 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 AK QY+ L+++ +GF N R ++ + SY E R LPY+IDG+V KV+EF Sbjct: 236 QAKTQYDALEELEKIGFHTNREKRLCHSIDEVWSYIEEYHDKRVDLPYEIDGIVIKVNEF 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ QLG ++PRW ++KF ++ T + +I+ +GRTG++TP A + PV + G ++ Sbjct: 296 SLQDQLGFTVKAPRWAAAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DYIK +DIR+ D VL+ +AG++IP+V +++++R D++ + Sbjct: 356 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 404 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S +V A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 405 LPTHCPVCGSELVHLDEE------VALRCINPK-CPAQMKEGLNHFVSRNAMNIDGLGPR 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ + + + AD++ L + + + + S N+ +I+ ++ S Sbjct: 458 VLEQMYDKK----LVADVADLYKLTEEELLT------LDKIKEKSANNILTAIDNSKDNS 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +ER IF LGIRHVGA+ A+ LA+++ + ++ D+ S+I + +GDIIA Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSKS----------DYESIIALDTIGDIIA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664 ++V ++ N + L + + + V S + K +V TG L + R Sbjct: 558 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRNAQLQEVESPFKEKTVVLTGKLTRFTRE 617 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +A+E + LG V+ +S+KTDI++ G++ GSKL KAQ+LG+++ E+Q L + Sbjct: 618 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMADALAK 673 >gi|229089420|ref|ZP_04220691.1| DNA ligase [Bacillus cereus Rock3-42] gi|228693897|gb|EEL47589.1| DNA ligase [Bacillus cereus Rock3-42] Length = 669 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q DD ++ + E Sbjct: 58 DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSEALDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD+++L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|228931797|ref|ZP_04094693.1| DNA ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827777|gb|EEM73515.1| DNA ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 669 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q DD ++ + E Sbjct: 58 DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSESLDYLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD+++L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|75759916|ref|ZP_00739987.1| NAD-dependent DNA ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228899023|ref|ZP_04063296.1| DNA ligase [Bacillus thuringiensis IBL 4222] gi|74492583|gb|EAO55728.1| NAD-dependent DNA ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228860598|gb|EEN04985.1| DNA ligase [Bacillus thuringiensis IBL 4222] Length = 669 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIELEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q DD ++ + E Sbjct: 58 DSPSVRVGGTILDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD++ L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G++ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGESAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|189219712|ref|YP_001940353.1| NAD-dependent DNA ligase [Methylacidiphilum infernorum V4] gi|254781365|sp|B3DWU2|DNLJ_METI4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|189186570|gb|ACD83755.1| NAD-dependent DNA ligase [Methylacidiphilum infernorum V4] Length = 689 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 230/720 (31%), Positives = 374/720 (51%), Gaps = 49/720 (6%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 + K++ +++L E+ +K L + I +D YY + P++ D EYD L + + Sbjct: 14 VNKKKAPSLDSLGYEEIKKRHDELVKLIRKYDYAYYVEAHPLVSDQEYDNLYHELETLEK 73 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 P+L P+ P +IG +VTH IP LSLE ++ E+L F+ RI R Sbjct: 74 LHPELI---TPDSPTQRIGETPLSGFSQVTHEIPMLSLENTYSKEELFAFLERIKRALPG 130 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSL 179 K I FT+EPKIDG I+ Y+ G F A RG+G G+D++ ++ I ++P R+ + Sbjct: 131 K---KISFTVEPKIDGVSISAVYKNGLFSLGATRGNGTVGDDITQNLKTIRSLPLRLETP 187 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238 + PE +EVRGE Y+S DF LN + G+ +ANPRNA +G L++L+P R L Sbjct: 188 DPPEYLEVRGEAYMSPKDFERLNAQREKEGKVLFANPRNATAGSLKQLDPRVVAERPLAV 247 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G GK + K Q E L ++ +G P+ + + + ++ R+ LPY Sbjct: 248 VFYGAGKLVGMKCKTQEEWLNFLKKIGLPIPIVFWVCSNENEVYEAIGKLNECRNQLPYP 307 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 DG KV+E+ LG A++PRW ++K+ ++A TRL ++ Q+GR+G +TPVA + Sbjct: 308 TDGAAVKVNEWEYYSLLGYTAKAPRWAFAYKYGAERAKTRLNNVIFQVGRSGTITPVAEM 367 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 +PV + G ++ ATLHN D +K L D+++GD V +++AGEVIP+VV + + Sbjct: 368 DPVFLSGTTVSRATLHNFDQVKRL-----------DVKIGDVVYLEKAGEVIPEVVGVDL 416 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 N+R + P FCP C ++ + RC C AQ ER+ HF R Sbjct: 417 NQRRGTEKEIVPPEFCPSCGEKLSWE--------GIFLRC-ENENCPAQLKERILHFAQR 467 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 +A +I+GLG+ +D ++ ADI+ L + + G S NL Sbjct: 468 NAMDIQGLGESLVDQLVDK----GIVKDVADIYDLDEETLVN------LDRMGKKSAQNL 517 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +I + + L R IF LGI H+G + + LA+Y+ + + L Sbjct: 518 LKAIEESKKKDLSRLIFGLGIPHIGQKASEDLARYFGTMDKLSHATE----------EEL 567 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 + +P +G+I+A++IV +++ N +E L K+ + + S + K V TGTL Sbjct: 568 LNLPFIGEIMARSIVNYFRKEANRRRLEKLRKKGLNFVSTLSQASSGTLSGKTFVITGTL 627 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R + + G VS LSRKT ++VG +PGSKL++A++LG+ ++NE++ L +L Sbjct: 628 SE-PRESIAQKIISKGGRVSNSLSRKTSYLVVGSDPGSKLQEAKKLGIPLINEQELLEML 686 >gi|33151983|ref|NP_873336.1| NAD-dependent DNA ligase LigA [Haemophilus ducreyi 35000HP] gi|81423646|sp|Q7VMX7|DNLJ_HAEDU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|33148205|gb|AAP95725.1| DNA ligase [Haemophilus ducreyi 35000HP] Length = 686 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 249/707 (35%), Positives = 399/707 (56%), Gaps = 47/707 (6%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 +L +L ++ ++ Y+ + P++ D+EYD L + I +P+L P+ P ++G Sbjct: 17 QLEALRDQLREYEYHYHVLNNPLVPDAEYDRLINQLKNIEQQYPELI---TPDSPTQRVG 73 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + +V H +P LSL+ ++ DL F+ RI + + + F EPK+DG + Sbjct: 74 AKPLAGFAQVAHEMPMLSLDNAFSETDLDNFLRRIENYLSLDANQ-LTFCCEPKLDGLAV 132 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKNDF 198 +I Y G AA RGDG +GE+++A +R I IP N P +E+RGE+++ F Sbjct: 133 SILYIDGVLQLAATRGDGTTGENITANVRTIRNIPLKLKMANPPHRLEIRGEIFMPLKGF 192 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF---AKGQ 254 ALN +A G K +ANPRNAA+G LR+L+P R L +G+G + Sbjct: 193 NALNQRALAKGEKSFANPRNAAAGSLRQLDPQITRQRPLMLNAYGIGVYESNYQRLPTSH 252 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 Y L+ ++ +G PVN +R A + ++++Y ++++ R+ L YDIDG V KVD+ ++Q+ Sbjct: 253 YARLEWLKSIGIPVNAEIRLARGYPQLLAFYADIQAKRADLGYDIDGTVLKVDDITIQET 312 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEP + G ++NATLH Sbjct: 313 LGFISRSPRWAIAYKFPAQEEMTILKDVEFQVGRTGAITPVAKLEPTLVAGVTVSNATLH 372 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L + +GD V+++RAG+VIP+++ I+ + R +A+ FP+ C Sbjct: 373 NGDEIERL-----------GVAIGDTVIIRRAGDVIPQIIGIVADRRPANAKKIVFPTAC 421 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S V+R A RCTGGL C AQ+ E LKHFVSR A NI+G+G++ ++ Sbjct: 422 PVCHSAVIRIAGE------AVARCTGGLFCPAQRKEALKHFVSRKAMNIDGVGEKLIEQL 475 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 E I PAD+F L + + G+ S N +SI K ++ +L RF+ Sbjct: 476 MARE----LIHTPADLFKL------DPLSLMRLERMGEKSAQNALNSIEKAKHTTLARFL 525 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 FSLGIR VG A +LA ++ S +N + L V VG+++A +V Sbjct: 526 FSLGIRDVGETTALNLANHFGSLENIRTA----------NVEQLKEVQDVGEVVANRLVC 575 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+Q N+ VE L+ + + + + +++K +V TGTL + R +A++ + QL Sbjct: 576 FWQEQHNVAVVEELIAQGVHWDNIVQLEIADNPLKDKNVVLTGTLTQFSRDQARKLLQQL 635 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G VS+ +S KTD +I G+ G+KL KA+QLG++I++E F L++Q Sbjct: 636 GCKVSSAVSTKTDFLIAGEKAGTKLTKAEQLGIRILDEHAFADLIKQ 682 >gi|186680717|ref|YP_001863913.1| NAD-dependent DNA ligase LigA [Nostoc punctiforme PCC 73102] gi|254781381|sp|B2J3P0|DNLJ_NOSP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|186463169|gb|ACC78970.1| DNA ligase, NAD-dependent [Nostoc punctiforme PCC 73102] Length = 678 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 231/713 (32%), Positives = 362/713 (50%), Gaps = 54/713 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K L Q + YY PI+ DS YD L R + +P+L P+ P ++ Sbjct: 9 KRTEELRQLLQQASYAYYVLDTPIMEDSVYDQLYRELQQLEIQYPELTA---PDSPTQRV 65 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G V H+IP SLE +NI++L+ + R R K D S+ + E KIDG+ Sbjct: 66 GERPATQFTSVRHNIPLYSLENAFNIDELQGWDQRWRRQVPKID--SVEYVTELKIDGSA 123 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISK 195 + + Y+ G V RGDG GED++ +R I +IP L I E +EVRGE ++ Sbjct: 124 LALTYQDGILVRGTTRGDGVMGEDITQNVRTIRSIPLRLNFEGLEILERVEVRGEAFLPL 183 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL---GKTSEIFA 251 F +N+E G + +ANPRNAA+G LR+L+ R L FF + L G+ A Sbjct: 184 EVFKQINEERQKAGEQLFANPRNAAAGTLRQLDSRIVAKRRLAFFGYTLHIPGRDDTSIA 243 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q+E L+ + +GF VN + + + YY + R LPY DG+V K++ F L Sbjct: 244 NTQWEALELLEKMGFQVNPNHKLCASIAEVAKYYEYWDTERLNLPYMTDGVVVKLNSFKL 303 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+QLG + PRW I+ K+ ++A TR+ +I + +GRTG LTP+A + PV + G ++ A Sbjct: 304 QEQLGFTQKFPRWAIALKYPAEEAPTRVENIAVNVGRTGALTPLAEMRPVQLAGTTVSRA 363 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I L DIR+GD V+V++AGE+IP+VV ++ R + +PF P Sbjct: 364 TLHNSDRIAQL-----------DIRIGDTVIVRKAGEIIPEVVRVLKELRPAETEPFVMP 412 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+C VVR+ A RC +C+A ++H+VSRDA +I+GLG++ + Sbjct: 413 THCPVCDQAVVRESGE------AVTRCVNA-SCAAILKGSIEHWVSRDALDIKGLGEKLV 465 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + AD++ L + + + G S L D+I + +N Sbjct: 466 HQLVDKV----LVHSVADLYELTAEKLCA------LERMGQKSAEKLVDAIAQSKNQPWS 515 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R ++ LGIRHVG+ A+ L + Y + + A + + + +G IAQ+ Sbjct: 516 RVLYGLGIRHVGSVNAQLLTQKYFTVEQLATAKQS----------DIEGIYGIGAEIAQS 565 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSEIENKKLVFTGTLQKIQRHKAQ 667 + ++++ N +E L E E + K V TGTL ++R +A+ Sbjct: 566 VYQWFRIDANQRLIERLQAEGLQLTAPEETKAFGDGNQIFAGKTFVVTGTLPTLKRDEAK 625 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + G V+ +S+KTD ++VG++ GSKLEKA LG+ ++E Q L +L + Sbjct: 626 ALIQKAGGKVTDSVSKKTDYLVVGEDAGSKLEKALSLGITQLSEAQLLEMLNE 678 >gi|69246831|ref|ZP_00604140.1| NAD-dependent DNA ligase [Enterococcus faecium DO] gi|260560049|ref|ZP_05832227.1| NAD-dependent DNA ligase [Enterococcus faecium C68] gi|293559999|ref|ZP_06676507.1| DNA ligase, NAD-dependent [Enterococcus faecium E1162] gi|294621040|ref|ZP_06700232.1| DNA ligase, NAD-dependent [Enterococcus faecium U0317] gi|314937827|ref|ZP_07845144.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a04] gi|314941627|ref|ZP_07848507.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133C] gi|314948874|ref|ZP_07852243.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0082] gi|314951008|ref|ZP_07854075.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133A] gi|314993009|ref|ZP_07858405.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133B] gi|314996456|ref|ZP_07861499.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a01] gi|68195064|gb|EAN09526.1| NAD-dependent DNA ligase [Enterococcus faecium DO] gi|260073884|gb|EEW62208.1| NAD-dependent DNA ligase [Enterococcus faecium C68] gi|291599354|gb|EFF30379.1| DNA ligase, NAD-dependent [Enterococcus faecium U0317] gi|291606087|gb|EFF35513.1| DNA ligase, NAD-dependent [Enterococcus faecium E1162] gi|313589438|gb|EFR68283.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a01] gi|313592532|gb|EFR71377.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133B] gi|313596863|gb|EFR75708.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133A] gi|313599518|gb|EFR78361.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133C] gi|313642858|gb|EFS07438.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a04] gi|313644664|gb|EFS09244.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0082] Length = 679 Score = 542 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 236/716 (32%), Positives = 388/716 (54%), Gaps = 53/716 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ++I++A K L ++ YY KP + D YD AI +PDL S Sbjct: 5 EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 62 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++GG++ KVTH IP SL +++ E+L F R+ + + + + Sbjct: 63 -DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRV----VDYCC 117 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++RYE G FV A RGDG GE+++ ++ + ++P L + IEVRGE Sbjct: 118 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKEPMN--IEVRGE 175 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 ++ K F+ LN + A G+ +ANPRNAA+G LR+L+ R L+ F++ + + Sbjct: 176 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPM 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 AK QY+ L+++ +GF N R ++ + SY E R LPY+IDG+V KV+EF Sbjct: 236 QAKTQYDALEELEKIGFHTNREKRLCHSIDEVWSYIEEYHDKRVDLPYEIDGIVIKVNEF 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ QLG ++PRW ++KF ++ T + +I+ +GRTG++TP A + PV + G ++ Sbjct: 296 SLQDQLGFTIKAPRWAAAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DYIK +DIR+ D VL+ +AG++IP+V +++++R D++ + Sbjct: 356 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 404 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S +V A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 405 LPTHCPVCGSELVHLDEE------VALRCINPK-CPAQMKEGLNHFVSRNAMNIDGLGPR 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ + + + AD++ L + + + + S N+ +I+ ++ S Sbjct: 458 VLEQMYDKK----LVADVADLYKLTEEELLT------LDKIKEKSANNILTAIDNSKDNS 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +ER IF LGIRHVGA+ A+ LA+++ + ++ D+ S+I + +GDIIA Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSKS----------DYESIIALDTIGDIIA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664 ++V ++ N + L + + + V S + K +V TG L + R Sbjct: 558 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRNAQLQEVESPFKEKTVVLTGKLTRFTRE 617 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +A+E + LG V+ +S+KTDI++ G++ GSKL KAQ+LG+++ E+Q L + Sbjct: 618 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMADALAK 673 >gi|228983547|ref|ZP_04143752.1| DNA ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228776143|gb|EEM24504.1| DNA ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 669 Score = 542 bits (1395), Expect = e-151, Method: Composition-based stats. Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q DD ++ + E Sbjct: 58 DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSEALDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD+++L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKEINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|152974127|ref|YP_001373644.1| NAD-dependent DNA ligase LigA [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|190359228|sp|A7GKJ1|DNLJ_BACCN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|152022879|gb|ABS20649.1| DNA ligase, NAD-dependent [Bacillus cytotoxicus NVH 391-98] Length = 669 Score = 542 bits (1395), Expect = e-151, Method: Composition-based stats. Identities = 246/715 (34%), Positives = 387/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E ++ + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEAVQQRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLETENPEFI---TE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q D ++ + E Sbjct: 58 DSPSVRVGGAVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGVNVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ + RGDG +GED++ ++ I IP L + +EVRGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGSTRGDGITGEDITQNLKTIKAIPLRLQEEV--TLEVRGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G LR+L+P R L+ FV+GL Sbjct: 173 YMPKRSFVKLNEEKEQNGEAVFANPRNAAAGSLRQLDPKIAAKRNLSMFVYGLADIEGKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 ITSHSEALDFLGELGFKTNPNRRICETIEEVIAYVEEWQEKRPNLDYEIDGIVIKVDDVT 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQERLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV+++ ++R + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVVFDKRTGKEEAYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S +VR A RC AC AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPTCDSGLVRLEEE------VALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ A IR AD++ L + Q + FG+ S +NL +I + SL Sbjct: 455 ITQLFE----ANYIRTFADLYGLTKDQL------LQLDRFGEKSASNLVQAIEASKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+LA+++ + N + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTLAEHFETMDNLVKAGE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 +IV ++ N + ++ + K N++S K +V TG L+ + R + Sbjct: 555 SIVTYFDNEDVLHLIQQFKDYGVNMTYKGIKRADLQNIASYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD++I G+ GSKL +A++ ++I NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVIAGEAAGSKLAQAEKHNIEIWNEERFLQELNK 669 >gi|119512036|ref|ZP_01631131.1| DNA ligase [Nodularia spumigena CCY9414] gi|119463326|gb|EAW44268.1| DNA ligase [Nodularia spumigena CCY9414] Length = 678 Score = 542 bits (1395), Expect = e-151, Method: Composition-based stats. Identities = 229/711 (32%), Positives = 364/711 (51%), Gaps = 54/711 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K + L Q + YY P++ D+ YD L R + +P+ P+ P ++ Sbjct: 9 KRVEELRQLLQQASYAYYVLDAPMMEDAVYDQLYRELQELEIKYPEFI---TPDSPTQRV 65 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + V H+IP SLE +NI++L+ + R R K + ++ + E KIDG+ Sbjct: 66 GEKPATHFTSVRHNIPLYSLENAFNIDELQIWDQRWRRQTPKIE--AVEYVSELKIDGSA 123 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISK 195 + + YE G V RGDG GED++ +R I +IP E IEVRGEV++ Sbjct: 124 LALTYENGILVRGVTRGDGVVGEDITQNVRTIRSIPLRLNFAGAKSLEKIEVRGEVFLPL 183 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL---GKTSEIFA 251 F +N E G +ANPRNAA+G LR+L+P R L+FF + L G A Sbjct: 184 EVFKQINAERQKAGEHIFANPRNAAAGTLRQLDPRIVAQRRLDFFAYTLHISGMDDASIA 243 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q+E L+ + +GFPVN + + + YY + R LPY DG+V K++ F L Sbjct: 244 NTQWEALELLEKMGFPVNPNHKLCRSLTEVAQYYQSWDTKRLNLPYMTDGVVVKLNPFKL 303 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+QLG + PRW ++ K+A ++A TR+ +I + +GRTG LTP+A++ PV + G ++ A Sbjct: 304 QEQLGFTQKFPRWAVALKYAAEEAPTRVENISVNVGRTGALTPLAQMRPVQLAGTTVSRA 363 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I L DIR+GD V+V++AGE+IP+VV ++ R D PF P Sbjct: 364 TLHNSDRILQL-----------DIRIGDTVIVRKAGEIIPEVVRVLTELRPDDTVPFIMP 412 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+C VVR+ A RC +C+A ++H+VSRDA +I+G+G++ + Sbjct: 413 THCPVCGQPVVRESGE------AVTRCVNA-SCAAILRGEIEHWVSRDALDIKGMGEKLV 465 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + AD++ L + + + G S L D+I + +N Sbjct: 466 HQLVDR----HLVNSVADLYDLTTERLCA------LERMGQKSAQKLIDAIAQSKNQPWS 515 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R ++ LGIRHVG+ A+ L + Y + + A + + + +G IAQ+ Sbjct: 516 RVLYGLGIRHVGSVNAQLLTQKYPTVEELATAKQS----------DIAGIYGIGAEIAQS 565 Query: 612 IVEFYQNPRNICAVEALLKEV----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + ++++ N +E L E + +V+ + K V TGTL + R +A+ Sbjct: 566 VYQWFRIDANHVLIERLKAEGLQLAATEETTTAADVNQNLAGKTFVITGTLPSLSRDEAK 625 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + G V+ +S+KTD ++VG++ GSKLEKAQ LG+ ++E L +L Sbjct: 626 ALIQKAGGKVTNSVSKKTDYLLVGEDAGSKLEKAQALGITQLSEALLLEML 676 >gi|166216290|sp|Q0AHH6|DNLJ_NITEC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 683 Score = 542 bits (1395), Expect = e-151, Method: Composition-based stats. Identities = 253/716 (35%), Positives = 379/716 (52%), Gaps = 52/716 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S + + L +L I+ HD YY PII D++YD L R + +P L P+ Sbjct: 3 SEKIIEERLKALRSTIALHDFHYYVQDAPIIPDADYDKLFRTLQQLEQQYPHLI---TPD 59 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++G ++TH P LSL + ++ F RI + + + +EP Sbjct: 60 SPTQRVGAPPLKVFARLTHQTPMLSLTNAFTEDEAIAFDKRIREALNV---DQVNYAVEP 116 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEV 191 K DG +++ Y G A RGDG++GED++ +R IP+IP + + + EVRGEV Sbjct: 117 KFDGLAVSLVYTNGILTNGATRGDGYTGEDITLNLRTIPSIPLRLQTATVTDQFEVRGEV 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG--LGKTSE 248 + K DF LN++ G K +ANPRNAA+G LR+L+ R L FF + L + Sbjct: 177 VMLKADFEHLNEQQRNKGEKLFANPRNAAAGSLRQLDSNITAARKLTFFAYDAVLSHKDQ 236 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 F E+L ++ F V G+++YY+EM ++R +LPY+IDG+VYKVD Sbjct: 237 PFFSKHSEILDYLKSQQFLVAQQNGTTTGVAGLLTYYHEMGALRLSLPYEIDGVVYKVDN 296 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q+ LG +R+PR+ I+HKF ++AST LL I+IQ+GRTG LTPVARL PV +GG + Sbjct: 297 LTQQETLGYVSRAPRFAIAHKFPAQEASTELLTIEIQVGRTGALTPVARLAPVFVGGVTV 356 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 TNATLHNED ++ + I +GD V+V+RAG+VIP+VV +I +R AQPF Sbjct: 357 TNATLHNEDEVQR-----------KQIMIGDTVIVRRAGDVIPEVVAVIPEQRPAHAQPF 405 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP+C S+ R A RCTGGL C AQ+ + + HF SR A +I+GLG+ Sbjct: 406 IMPDHCPVCGSKAARLPGE------AVTRCTGGLYCPAQRKQAIWHFASRRALDIDGLGE 459 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + +D E + PAD++ L + + ++ + S NL +I + Sbjct: 460 KLIDQLIDRE----LVHTPADLYKL------NIDTLASLERMAEKSARNLVTAIEHSKKT 509 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI++LGIRHVG A++LA D L ++P VG I+ Sbjct: 510 TLPRFIYALGIRHVGEATAKALANQASHLDQLMTL----------DIEQLQQIPDVGPIV 559 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI-----GRHEKNVSSEIENKKLVFTGTLQKIQR 663 AQ+I++F+ N + LL + + +S + K V TGTL + R Sbjct: 560 AQSIIDFFSEAHNREVIRQLLDSGLQWEIPNHGVQQSEQTNSAVSGKTFVLTGTLPTMTR 619 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A+ + Q G V+ +S T ++ G +PGSK KA LG+ +++E+Q L LLQ Sbjct: 620 DQAKIKIEQQGGKVTGSVSSATSYVVAGSDPGSKYAKAIGLGISVLDEDQLLSLLQ 675 >gi|114330949|ref|YP_747171.1| DNA ligase, NAD-dependent [Nitrosomonas eutropha C91] gi|114307963|gb|ABI59206.1| DNA ligase, NAD-dependent [Nitrosomonas eutropha C91] Length = 715 Score = 542 bits (1395), Expect = e-151, Method: Composition-based stats. Identities = 253/716 (35%), Positives = 379/716 (52%), Gaps = 52/716 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S + + L +L I+ HD YY PII D++YD L R + +P L P+ Sbjct: 35 SEKIIEERLKALRSTIALHDFHYYVQDAPIIPDADYDKLFRTLQQLEQQYPHLI---TPD 91 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++G ++TH P LSL + ++ F RI + + + +EP Sbjct: 92 SPTQRVGAPPLKVFARLTHQTPMLSLTNAFTEDEAIAFDKRIREALNV---DQVNYAVEP 148 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEV 191 K DG +++ Y G A RGDG++GED++ +R IP+IP + + + EVRGEV Sbjct: 149 KFDGLAVSLVYTNGILTNGATRGDGYTGEDITLNLRTIPSIPLRLQTATVTDQFEVRGEV 208 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG--LGKTSE 248 + K DF LN++ G K +ANPRNAA+G LR+L+ R L FF + L + Sbjct: 209 VMLKADFEHLNEQQRNKGEKLFANPRNAAAGSLRQLDSNITAARKLTFFAYDAVLSHKDQ 268 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 F E+L ++ F V G+++YY+EM ++R +LPY+IDG+VYKVD Sbjct: 269 PFFSKHSEILDYLKSQQFLVAQQNGTTTGVAGLLTYYHEMGALRLSLPYEIDGVVYKVDN 328 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q+ LG +R+PR+ I+HKF ++AST LL I+IQ+GRTG LTPVARL PV +GG + Sbjct: 329 LTQQETLGYVSRAPRFAIAHKFPAQEASTELLTIEIQVGRTGALTPVARLAPVFVGGVTV 388 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 TNATLHNED ++ + I +GD V+V+RAG+VIP+VV +I +R AQPF Sbjct: 389 TNATLHNEDEVQR-----------KQIMIGDTVIVRRAGDVIPEVVAVIPEQRPAHAQPF 437 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP+C S+ R A RCTGGL C AQ+ + + HF SR A +I+GLG+ Sbjct: 438 IMPDHCPVCGSKAARLPGE------AVTRCTGGLYCPAQRKQAIWHFASRRALDIDGLGE 491 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + +D E + PAD++ L + + ++ + S NL +I + Sbjct: 492 KLIDQLIDRE----LVHTPADLYKL------NIDTLASLERMAEKSARNLVTAIEHSKKT 541 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI++LGIRHVG A++LA D L ++P VG I+ Sbjct: 542 TLPRFIYALGIRHVGEATAKALANQASHLDQLMTL----------DIEQLQQIPDVGPIV 591 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI-----GRHEKNVSSEIENKKLVFTGTLQKIQR 663 AQ+I++F+ N + LL + + +S + K V TGTL + R Sbjct: 592 AQSIIDFFSEAHNREVIRQLLDSGLQWEIPNHGVQQSEQTNSAVSGKTFVLTGTLPTMTR 651 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A+ + Q G V+ +S T ++ G +PGSK KA LG+ +++E+Q L LLQ Sbjct: 652 DQAKIKIEQQGGKVTGSVSSATSYVVAGSDPGSKYAKAIGLGISVLDEDQLLSLLQ 707 >gi|320160951|ref|YP_004174175.1| DNA ligase [Anaerolinea thermophila UNI-1] gi|319994804|dbj|BAJ63575.1| DNA ligase [Anaerolinea thermophila UNI-1] Length = 674 Score = 542 bits (1395), Expect = e-151, Method: Composition-based stats. Identities = 248/717 (34%), Positives = 377/717 (52%), Gaps = 51/717 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + +E +L+++I YHD YY P+I D+EYD L R I A P+ P Sbjct: 1 MSQDPLYQEYENLKKQIHYHDYRYYVLDDPVISDAEYDRLILRLKQIEFAHPEWI---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG KV H P LSL + D+ +I RI + + F LE Sbjct: 58 DSPSQRVGGMPQDKFNKVRHPSPILSLANGFEKSDVLAWIERIRKLDARVATAD--FVLE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-----RVLSLNIPEIIE 186 PKIDG + + Y+ G FV A RGDG GED++A +R I ++P ++ +PE + Sbjct: 116 PKIDGLTVVLTYQNGVFVQGATRGDGEVGEDITANLRTIRSLPLVIPVEQNNVPVPEWVV 175 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGE ++ DF LN + G K Y NPRN A+G LR+L+P+ +R +N FV+ + Sbjct: 176 VRGEAFMFIKDFEELNKRLEQSGEKTYLNPRNTAAGSLRQLDPSLTASRPINIFVYAIVA 235 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 +S + Q+E LQ ++ GFPV + V+ + ++ ++ + R TLPY+ DG+V K Sbjct: 236 SSAPLPQTQWEQLQTLKAWGFPVASDVQYCASVEEVLKGLDQWREKRDTLPYEADGVVIK 295 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 +++ L LG + PR ++ KF ++ STRLLDI + +GRTG+LTP A LEPV IGG Sbjct: 296 INDLELASSLGYVGKDPRGALAFKFPAREISTRLLDIGVNVGRTGVLTPYAILEPVEIGG 355 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ ATLHN D+I+ +DIR+GDRV+VKRAG+VIP V+ IV R D Sbjct: 356 VIVKQATLHNFDFIR-----------EKDIRIGDRVMVKRAGDVIPYVIGPIVELRTGDE 404 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + F P CP C V + C AQ + ++HFVSR A +I G Sbjct: 405 RVFIPPEMCPACGQPVSHVEGE-------VAWYCLNVTCPAQIIRNVEHFVSRGAMDIVG 457 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG + ++ + ++ PAD++ L + + + GF D N+ +I Sbjct: 458 LGIKIVEQLVEK----GFVQSPADLYFLSKEDLLT------LEGFADKKAENILQAIQNS 507 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R+ L R I +LGIR VG +A LAK++ + ++ L+ + VG Sbjct: 508 RSRPLSRLITALGIRGVGEVMAGELAKHFKNLDALSKAT----------VQQLMEIEGVG 557 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQR 663 IAQ+IVE++ + N + L + + S + V TGTL++ R Sbjct: 558 PNIAQSIVEWFTHSGNQEFLRKLREAGVWPTEQTPVESVESLPLAGLTFVVTGTLKEFSR 617 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + Y+ +LGA V+ +SR T ++VG+NPGSKLEKA+QLGV+I+ EE+ L+ + Sbjct: 618 EGIKGYLERLGAKVTDSVSRNTSYLLVGENPGSKLEKARQLGVRIITEEELKQLVSK 674 >gi|238897965|ref|YP_002923645.1| DNA ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|257096312|sp|C4K4K4|DNLJ_HAMD5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|229465723|gb|ACQ67497.1| DNA ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 702 Score = 542 bits (1395), Expect = e-151, Method: Composition-based stats. Identities = 245/733 (33%), Positives = 395/733 (53%), Gaps = 67/733 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++++ L + +H+ Y+ P I D+EYDAL + +P+L +P+ Sbjct: 1 MKSMLEKINQLRDVLKHHEYLYHVNDAPEITDAEYDALLEKLREWESQYPELM---NPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---------- 123 P K+G + + VTH +P LSL+ +++ + F R+ + + Sbjct: 58 PTQKVGASPSTAFKPVTHQVPMLSLDNVFDEKGFLAFNKRVSERLEAESSAQKASLNPLV 117 Query: 124 --------------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRA 169 ++ F E K+DG +++ YEKG+ AA RG+G GE+++ IR Sbjct: 118 RDSDQKNRSEKNVQEALTFCCELKLDGLAVSLIYEKGELTQAATRGNGFQGENITHNIRT 177 Query: 170 IPTIPRVLSLNI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN 228 I +IP L P+ IE+RGEVY+ + F LN + A K ++NPRNAA+G LR+L+ Sbjct: 178 IQSIPLRLKGKALPQRIEIRGEVYMPQAGFEKLNKQARANHEKIFSNPRNAAAGSLRQLD 237 Query: 229 -PTDITRYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYN 286 R LNFF +G+G + + L +++ G PV++ + ++++Y Sbjct: 238 PHITAQRPLNFFCYGVGLLEGGVLPQSHIQRLMQLKAWGLPVHDRITLCTGAEQVMAFYQ 297 Query: 287 EMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQI 346 E+ R+TL +DIDG+V KVD+ LQ++LG A++PRW + KF ++ +T++L ++ Q+ Sbjct: 298 EIAQARATLGFDIDGIVIKVDDVLLQEKLGFLAKAPRWATAFKFPAQEKTTQVLGVEFQV 357 Query: 347 GRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRA 406 GRTG LTPVARLEPV +GGAL++NA LHN D I L +R+GD V+V+RA Sbjct: 358 GRTGALTPVARLEPVELGGALVSNANLHNADEIARL-----------GLRIGDTVVVRRA 406 Query: 407 GEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSA 466 G+VIP++V++I+ R + FP CPIC+S R A RCTGGL C A Sbjct: 407 GDVIPQIVNVIIESRPQNTVEIIFPHHCPICKSVAKRIEGE------AVIRCTGGLFCPA 460 Query: 467 QQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN 526 Q+ E LKHFV+R A +IEGLG + + + ++ PAD+F L + S Sbjct: 461 QRKEALKHFVARRALDIEGLGDKIIHQLVDKK----YVQNPADLFHLTSEKLLS------ 510 Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 + + S NL +S+ K + + RF+++LGIR VG A +LA Y+ + Sbjct: 511 LKRMREKSAQNLLNSLKKSQKTTFARFLYALGIREVGETTAANLALYFGQLDLLRKA--- 567 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 D +L +VP VG+++A+ +V+F+ N + + AL + + + Sbjct: 568 -------DIETLKKVPDVGEVVAKNLVDFFGNEHHQQVISALESVLDWPDPEPIEKPNHP 620 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 +K +V TG+L R + ++ LGA VS +S+KTD +I G+NPGSK +KA++ G+ Sbjct: 621 FRDKTVVLTGSLNAFTRDDLKAHLISLGAKVSGSVSKKTDFLIAGENPGSKAQKAEKSGI 680 Query: 707 KIMNEEQFLFLLQ 719 KIMNE + + L+ Sbjct: 681 KIMNEPELIEFLK 693 >gi|256820386|ref|YP_003141665.1| DNA ligase, NAD-dependent [Capnocytophaga ochracea DSM 7271] gi|256581969|gb|ACU93104.1| DNA ligase, NAD-dependent [Capnocytophaga ochracea DSM 7271] Length = 662 Score = 542 bits (1395), Expect = e-151, Method: Composition-based stats. Identities = 232/705 (32%), Positives = 368/705 (52%), Gaps = 49/705 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L +E++ H+ YY P I D E+D + A+ A+P+ D N P + Sbjct: 2 KEKIQQLREELNEHNYNYYVLDNPTISDYEFDQKLKELQALEQAYPEF---YDENSPTVR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + S V H SL+ ++ EDL ++ RI + + I FT E K DG Sbjct: 59 VGGSVTKSFPTVIHEYRMYSLDNSYSKEDLEEWEQRIIKTLG---SDQINFTCELKYDGA 115 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I + YE GK A RGDG G+D++A +R I ++P L + PE +RGE+ + K Sbjct: 116 SIDLLYENGKLKQATTRGDGIQGDDITANVRTIRSVPLQLKGDYPERFYIRGEIVMPKKA 175 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256 F +LN E A G P+ NPRN ASG L+ + + R L+ ++ L K Q+E Sbjct: 176 FESLNKERTAAGEDPFMNPRNTASGSLKLQDTAEVAKRGLDCLLYFL--VGNTGIKSQFE 233 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+K R GF V N + ++ ++ + NE + R TLPY+ DG+V KVD + Q++LG Sbjct: 234 SLEKAREWGFKVPNISKLCHSTAEVMDFINEWDTKRHTLPYETDGVVVKVDSIAQQEELG 293 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++SPRW +++KF +Q T L I Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 294 YTSKSPRWAMAYKFKAEQVDTVLESISYQVGRTGAITPVANLKPVLLAGTVVKRASLHNA 353 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L DIR+GD V V++ GE+IPK+V + +++R DAQP + + CP Sbjct: 354 DQIEKL-----------DIRIGDSVYVEKGGEIIPKIVGVNLDKREADAQPVKYITHCPE 402 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + +VR+ A H C C Q +++HF+SR A +IEGLG++ ++ F+ Sbjct: 403 CGTELVRNEGE------AQHYCPNAYGCPPQITGKIQHFISRKAMDIEGLGEETVEQLFR 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 A I AD++ + K+ + S N+ I K + I ER +F+ Sbjct: 457 ----AGIIHTYADLYEVTVE------KLLPLERMAQKSAENIVKGIQKSKEIPFERVLFA 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR+VG +A+ LA++Y + + L+ V +G+ IA +IV F+ Sbjct: 507 LGIRYVGETVAKKLARHYKTIEALENAT----------IEQLVEVDEIGNQIASSIVNFF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + N ++ L + ++ V +G R + + + Q G Sbjct: 557 ADDYNRQLIDRLKGYGLQFSINEQATEGQTDTLKGLTFVVSGVFHLYSREELKALIEQHG 616 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 V + +S KT+ +IVGDN G SK EKA+QLGVK+++EE+F ++ Sbjct: 617 GKVGSSISSKTNYVIVGDNMGPSKKEKAEQLGVKMISEEEFNAMI 661 >gi|262375659|ref|ZP_06068891.1| DNA ligase, NAD-dependent [Acinetobacter lwoffii SH145] gi|262309262|gb|EEY90393.1| DNA ligase, NAD-dependent [Acinetobacter lwoffii SH145] Length = 679 Score = 542 bits (1395), Expect = e-151, Method: Composition-based stats. Identities = 248/717 (34%), Positives = 373/717 (52%), Gaps = 48/717 (6%) Query: 12 LSIEQ-ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ++ + ++ L Q ++ H+ YY +P I DSEYD L + A+ +PDL +S Sbjct: 1 MTQDATVIAQMRQLIQLLAKHNHAYYVMDQPSIEDSEYDQLFHQLKALEQQYPDLIQS-- 58 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P +K+GG+ VTH++P LSL ++N EDL F RI + I + + Sbjct: 59 -DSPTDKVGGQALSKFVTVTHAVPMLSLGNVFNQEDLLAFARRIEERL---PNQKIEYDV 114 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR---VLSLNIPEIIEV 187 E K DG I++ YE G RGDG +GED++ +R I +P+ ++ IP+++EV Sbjct: 115 ELKFDGLAISLWYEHGVLTRGVTRGDGETGEDITQNVRTIRNLPKLLSPVNGIIPDLLEV 174 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLG-K 245 RGEV + K+ F LN A G K +ANPRNAA+G LR+L+P F+ +G+ Sbjct: 175 RGEVLMPKSGFEKLNAANAAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQC 234 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 L+ + GF V ++ + Y ++ R++L +IDG+V K Sbjct: 235 VPHHGQTTMSASLEWLHQFGFAVGERHFICDSIQDVQKVYEQIIDERASLSVEIDGMVIK 294 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ Q+QLG +R PRW ++KF A T + +I+ Q+GRTG LTPVARL PV +GG Sbjct: 295 VNDLKQQQQLGFLSREPRWATAYKFPAVAALTTVENINWQVGRTGTLTPVARLNPVAVGG 354 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++N TLHN I L D+R+GD V V R+G+VIPKV + R DA Sbjct: 355 VTVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRSGDVIPKVEKVWPEFRPVDA 403 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P CP+C S VV A RC+GGL C+AQ++E ++HFVSR A +IEG Sbjct: 404 VEVHLPEQCPVCDSPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEG 457 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG + + + +DI+ L ++ + I G SV NL D+I Sbjct: 458 LGDRWAESLLH----LNLLNDVSDIYHLHEHRE----TLLGIEKMGAKSVQNLLDAIENS 509 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + +L FI++LGIR VG AR LA + + Q D +L + P VG Sbjct: 510 KKTTLAAFIYALGIRGVGETTARMLANTFQTLDALRQA----------DLEALKKTPDVG 559 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 DI A+ I++F+Q P N+ ++ LL + + V TGTL + R Sbjct: 560 DITAEWILDFFQAPHNLEVLDRLLAAG-IHWDAPIAPTRQPLNGESWVVTGTLSSMGRDD 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A + + LGA VS +S KT ++ G+ GSKL+KA++LG+ ++NE+QF+ L+Q Y Sbjct: 619 ATQLLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAEKLGIPVINEQQFIGLMQDYG 675 >gi|229194680|ref|ZP_04321473.1| DNA ligase [Bacillus cereus m1293] gi|228588783|gb|EEK46808.1| DNA ligase [Bacillus cereus m1293] Length = 669 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 247/715 (34%), Positives = 390/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q DD ++ + E Sbjct: 58 DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +EVRGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEVRGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 ILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ A IR AD+++L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFE----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + +NV S K +V TG L+ + R + Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|52144941|ref|YP_081888.1| NAD-dependent DNA ligase LigA [Bacillus cereus E33L] gi|81689708|sp|Q63GS3|DNLJ_BACCZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|51978410|gb|AAU19960.1| DNA ligase(NAD+) (NAD-dependent DNA ligase) [Bacillus cereus E33L] Length = 669 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q DD ++ + E Sbjct: 58 DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD+++L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKTINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|257887196|ref|ZP_05666849.1| NAD-dependent DNA ligase [Enterococcus faecium 1,141,733] gi|257823250|gb|EEV50182.1| NAD-dependent DNA ligase [Enterococcus faecium 1,141,733] Length = 678 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 236/720 (32%), Positives = 391/720 (54%), Gaps = 53/720 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ++I++A K L ++ YY KP + D YD AI +PDL S Sbjct: 4 EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 61 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++GG++ KVTH IP SL +++ E+L F R+ + + + + Sbjct: 62 -DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRV----VDYCC 116 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++RYE G FV A RGDG GE+++ ++ + ++P L + IEVRGE Sbjct: 117 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKEPMN--IEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 ++ K F+ LN + A G+ +ANPRNAA+G LR+L+ R L+ F++ + + Sbjct: 175 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPM 234 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 AK QY+ L+++ +GF N R ++ + +Y E R LPY+IDG+V KV+EF Sbjct: 235 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ QLG ++PRW ++KF ++ T + +I+ +GRTG++TP A + PV + G ++ Sbjct: 295 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DYIK +DIR+ D VL+ +AG++IP+V +++++R D++ + Sbjct: 355 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S +V A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 404 LPTHCPVCGSELVHLDEE------VALRCINPK-CPAQMKEGLNHFVSRNAMNIDGLGPR 456 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ + + + AD++ L + + + + S N+ +I+ ++ S Sbjct: 457 VLEQMYDKK----LVADVADLYKLTEEELLT------LDKIKEKSANNILTAIDNSKDNS 506 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +ER IF LGIRHVGA+ A+ LA+++ + ++ D+ S+I + +GDIIA Sbjct: 507 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSRS----------DYESIIALDTIGDIIA 556 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664 ++V ++ N + L + + + V S + K +V TG L ++ R Sbjct: 557 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTRLTRE 616 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 +A+E + LG V+ +S+KTDI++ G++ GSKL KAQ+LG+++ E+Q L Q ++ Sbjct: 617 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMAEALAQSHSA 676 >gi|218895413|ref|YP_002443824.1| DNA ligase, NAD-dependent [Bacillus cereus G9842] gi|228963387|ref|ZP_04124548.1| DNA ligase [Bacillus thuringiensis serovar sotto str. T04001] gi|254781550|sp|B7IUW5|DNLJ_BACC2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218545091|gb|ACK97485.1| DNA ligase, NAD-dependent [Bacillus cereus G9842] gi|228796281|gb|EEM43728.1| DNA ligase [Bacillus thuringiensis serovar sotto str. T04001] Length = 669 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q DD ++ + E Sbjct: 58 DSPSVRVGGTILDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD++ L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G++ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGESAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|320105506|ref|YP_004181096.1| NAD-dependent DNA ligase [Terriglobus saanensis SP1PR4] gi|319924027|gb|ADV81102.1| DNA ligase, NAD-dependent [Terriglobus saanensis SP1PR4] Length = 694 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 236/737 (32%), Positives = 364/737 (49%), Gaps = 73/737 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E + S L EI +H+ YY KP I D++YDAL A+ P+L P Sbjct: 1 MSPE---QRASELRAEIEHHEHAYYVLDKPEISDAQYDALVNLLKALETEHPELV---TP 54 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P ++GG+ KV HS P LSL+ +N +LR + R+ +++ +T E Sbjct: 55 ESPTQRVGGKPREGFAKVAHSRPMLSLDNAYNEAELRAWAERVTTSL--PASDAVEYTCE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP------RVLSLNIPEII 185 K+DG + + YE G+ V RGDG GEDV++ +R I ++P ++ + +P Sbjct: 113 YKLDGLSLALHYENGQLVRGVTRGDGSVGEDVTSNVRTIRSVPLRIAAAKLKAAGLPGTF 172 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG 244 EVRGEV + ++ F LN + A G+ ANPRNAA+G +R + P+ R L+F+ + L Sbjct: 173 EVRGEVVMPQSAFEELNRQREAAGQAAAANPRNAAAGTIRTIEPSIVAQRRLDFYAYFLL 232 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + + K Q L +R GF VN R T ++ + + ++ R L Y+IDG+V Sbjct: 233 RDGDTLLKSQQATLDALRATGFRVNAQARTVGTIDEVLGFIAQAEAERDGLGYEIDGVVI 292 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ +LQK+LG ++PRW I++KF + T+L + Q+GRTG LTPVA L+P+ IG Sbjct: 293 KVNATALQKRLGFTGKAPRWAIAYKFPARAGVTQLRGVIFQVGRTGKLTPVADLQPIFIG 352 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP- 423 G +T ATLHN D I+ L +++GD V V+R G+VIPK+ ++ ++ H Sbjct: 353 GTTVTRATLHNADEIERL-----------GLKIGDHVSVERGGDVIPKITHVVEDKIHAR 401 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + FP+ CP C VVR+ RC +C A+ E L+HF SR NI Sbjct: 402 GTEEIVFPTVCPRCGEPVVREEGE------VDWRCVNA-SCPARLEEELRHFASRGVMNI 454 Query: 484 EGLGKQQLDFF----------------------FKSEDPAFSIRIPADIFTLQRRQQTST 521 EGLG+ + ++ + ADI+ L Q Sbjct: 455 EGLGESLVAQLLGHTVAEAVDATAGVGEGEESVAEAPTREALVHSVADIYGLTLEQLMG- 513 Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 + G S +L I K ++ L R + LGIRHVG A++LA+ + S Sbjct: 514 -----LERIGQKSAESLLAEIEKSKSAPLSRVLLGLGIRHVGERTAQTLAEEFGSMDALI 568 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 L RV VG +A+AI E++ N +N+ V+ L + Sbjct: 569 SATE----------EDLTRVNDVGPKVAEAIREWFANEKNLLLVQRLKDAGLTMTAEKRE 618 Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701 + + V TGTL + R A+E + G VS +S+KT ++ G++ GSKLEKA Sbjct: 619 RGTQ-LAGMTFVLTGTLPTLTRDTAKEKIEAAGGKVSGSVSKKTTYVVAGEDAGSKLEKA 677 Query: 702 QQLGVKIMNEEQFLFLL 718 ++LG+ +++E L +L Sbjct: 678 RELGIAVLDEAGLLEML 694 >gi|206974389|ref|ZP_03235306.1| DNA ligase, NAD-dependent [Bacillus cereus H3081.97] gi|217957864|ref|YP_002336408.1| NAD-dependent DNA ligase LigA [Bacillus cereus AH187] gi|254781553|sp|B7HSW5|DNLJ_BACC7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781554|sp|B9J1L6|DNLJ_BACCQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|206747629|gb|EDZ59019.1| DNA ligase, NAD-dependent [Bacillus cereus H3081.97] gi|217064176|gb|ACJ78426.1| DNA ligase, NAD-dependent [Bacillus cereus AH187] Length = 669 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 245/715 (34%), Positives = 389/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q DD ++ + E Sbjct: 58 DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 ILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV+++ ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVLFDKRTGEEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ A IR AD+++L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFE----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + +NV S K +V TG L+ + R + Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|313159317|gb|EFR58681.1| DNA ligase (NAD+) [Alistipes sp. HGB5] Length = 694 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 221/704 (31%), Positives = 358/704 (50%), Gaps = 47/704 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 R+ + L +++ YH+ YY + P I D E+DA+ R + A P++A DPN P Sbjct: 2 IRERIEELRRQLEYHNFRYYVENAPEISDFEFDAMMRELQDLERAHPEMA---DPNSPSV 58 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G ++ V H P LSL ++ ++L +FI RI + + F E K DG Sbjct: 59 RVGSDITAEFRSVKHRFPMLSLGNTYSPDELHEFIERIEK-----ETGPTEFVCELKFDG 113 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 T I++ YE G+ + A RGDG G+DV+A +R + T+P L + P+ E+RGE+ + Sbjct: 114 TAISLTYEHGRLLRAVTRGDGTQGDDVTANVRTVRTVPLRLRGDDWPDYFEIRGEILMPY 173 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 F +N E A G +ANPRNAA+G L++ + R ++ + Sbjct: 174 ASFDKINAEREAAGETLFANPRNAAAGTLKQQASAVVARRGLDCTLYQLAGDDLPFTNHW 233 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQK R GF +++ +R + I +Y R LP+ DG+V KV++F +++QL Sbjct: 234 ESLQKAREWGFKISDQMRICRSAEEIDAYIAHWDEARRELPFPTDGVVIKVNDFGVRRQL 293 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A++P+W +++KF +QA TRL + Q+GRTG +TPVA LEPV + G + ATLHN Sbjct: 294 GFTAKAPKWAVAYKFKAEQALTRLDSVAFQVGRTGAITPVANLEPVLLAGTTVRRATLHN 353 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 + + L DIR GD V V++ GE+IPK+ + +++R D++PF + + CP Sbjct: 354 AEQMALL-----------DIRPGDMVYVEKGGEIIPKITGVELSQRPADSRPFEYITVCP 402 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + +V+ A H C C Q + R+ HF+ R A +IEGLG++ ++ + Sbjct: 403 ECGTPLVKYEGE------AKHYCPNQGGCRPQIIGRIIHFIRRKAMDIEGLGEETVELLY 456 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 ++ +R AD++ LQ Q + G+ S N+ SI + R +F Sbjct: 457 EN----GLVRDVADLYDLQAPQL------ACLPRLGEKSADNIIRSIRGSVEVPFRRVLF 506 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIR VG A+ LA+++ S + L VG IA AI+E+ Sbjct: 507 GLGIRFVGETTAKYLAEHFRSLDAVMKATR----------EELTEADEVGGRIADAIIEY 556 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + + +N+ + L + S + K V +G R + +E + G Sbjct: 557 FADEKNLAIIRRLRDAGVKFEAEARELASESLAGKSFVISGKFSNHSRDELKELIEIHGG 616 Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 A +S D I+ G+N G +KL+KA++LGVKI++EE F+ ++ Sbjct: 617 RNLAAVSANVDYIVAGENMGPAKLKKAEKLGVKIISEEDFIAMI 660 >gi|229159446|ref|ZP_04287464.1| DNA ligase [Bacillus cereus R309803] gi|228624017|gb|EEK80825.1| DNA ligase [Bacillus cereus R309803] Length = 669 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 247/715 (34%), Positives = 387/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q DD ++ + E Sbjct: 58 DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQENLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD++ L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDGLVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKSADLQNVESYFAGKTVVLTGKLEIMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|30018549|ref|NP_830180.1| NAD-dependent DNA ligase LigA [Bacillus cereus ATCC 14579] gi|229125792|ref|ZP_04254818.1| DNA ligase [Bacillus cereus BDRD-Cer4] gi|81436035|sp|Q81IP2|DNLJ_BACCR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|29894090|gb|AAP07381.1| NAD-dependent DNA ligase [Bacillus cereus ATCC 14579] gi|228657649|gb|EEL13461.1| DNA ligase [Bacillus cereus BDRD-Cer4] Length = 669 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 246/715 (34%), Positives = 386/715 (53%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q D ++ + E Sbjct: 58 DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD++ L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|291569184|dbj|BAI91456.1| DNA ligase [Arthrospira platensis NIES-39] Length = 683 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 212/713 (29%), Positives = 355/713 (49%), Gaps = 47/713 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++L+ L + YY PI+ D YD L R + + +P+L P+ P Sbjct: 11 EISQKLAQLRLTVQRASYAYYVLDDPIMEDGVYDRLYRELQELENQYPELI---SPDSPT 67 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G + VTH+IP SLE +N+ +L+ + + RF + E KID Sbjct: 68 QRVGEKPAAQFQSVTHNIPLYSLENAFNMAELQAWDEKWRRFLGDSLPQDPKYICELKID 127 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYIS 194 G+ I + Y G V RGDG +GED++ ++ I +IP L N P ++EVRGE ++S Sbjct: 128 GSAIALTYHNGILVRGVTRGDGVTGEDITQNVKTIRSIPLKLHLDNPPPVVEVRGEAFLS 187 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 + F+ +N E G +ANPRNAA+G LR+L+P + F Sbjct: 188 NHIFVQINQERQQTGEPLFANPRNAAAGTLRQLDPRIVADRRLDFFAYTLHLDSPNLHDH 247 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 ++ L+ ++ +GF VN + + + Y++ + R LPY DG+V K++ SLQKQ Sbjct: 248 WDCLELLQKMGFKVNPNRQLCQSLLEVQQYFDAWDTQRRELPYMTDGVVVKLNSLSLQKQ 307 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LGE + PRW I+ K+ ++ T+++ + Q+GRTG LTPVA LEP+ + G + ATLH Sbjct: 308 LGETRKFPRWAIALKYPAEELPTKIISVTFQVGRTGALTPVAELEPIQLAGTTVKRATLH 367 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N+D + L D+ +GD V+V++AGE+IP+VV ++ + R A+ + P+ C Sbjct: 368 NQDRLTEL-----------DLHIGDTVIVRKAGEIIPEVVRVLPDLRPTGAKLVTMPTHC 416 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C V++ A RC +C A + H+ R A +I G+G++ + Sbjct: 417 PECGETVIKTPAE------AVTRCINS-SCPAIVRGSIIHWCQRPALDINGIGEKLVQQL 469 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 ++ +R AD++ L Q + + G+ S + +I + R + Sbjct: 470 VDAQ----LVRSVADLYDLNMDQ------LLELDRMGEKSAQKILAAIATSKQQPWHRVL 519 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + LGIRHVG A+ LA+ + S Q+ A + + V +G IA ++ + Sbjct: 520 YGLGIRHVGKANAQLLAQNFPSCQSLAAASSA----------QIEGVYGIGAEIATSVYQ 569 Query: 615 FYQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++QNP NI + L + PS + + K V TGTL + R +A+ Sbjct: 570 WFQNPANISLCDRLQQAGLQLTSVPSTAPKSTHQAQPFAGKTFVLTGTLPTLSRDQAKSM 629 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + G V+ +++K D +++G+ PGSKL+KAQ L + ++E FL +++ N Sbjct: 630 IENAGGKVTNSVTKKVDYLLLGEKPGSKLKKAQDLAIANLSESDFLAMIKSAN 682 >gi|258592875|emb|CBE69184.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [NC10 bacterium 'Dutch sediment'] Length = 684 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 232/715 (32%), Positives = 365/715 (51%), Gaps = 56/715 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R ++ L Q I H+ YY +P I D+E+D L +R + P+L P+ P + Sbjct: 8 RAQVDDLRQLIRRHEYLYYVLDRPEITDAEFDTLYQRLQTLETQHPELI---TPDSPTQR 64 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG V H LSL+ +N E+LR+F RI R + +EPK+DG Sbjct: 65 VGGRPVEGFASVQHKAAMLSLDNAYNAEELREFEARIKRAL---PGERFTYVVEPKVDGL 121 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII--EVRGEVYISK 195 + + YE G+ V A RGDG GEDV+ + + IPR L + EVRGE++I + Sbjct: 122 SVALLYEGGRLVRGATRGDGRYGEDVTQNLMTVRGIPRYLHGPLAACAALEVRGEIFIWR 181 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254 F LN E+ A G +P+ANPRNAA+G +R+ +P R L+ F++G+ Sbjct: 182 QAFEKLNRELEAEGEEPFANPRNAAAGSVRQKDPRITEVRRLDIFIYGVSYAEPDPFTEH 241 Query: 255 YEMLQKMRCLGFPVNN---------GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 ++ + ++ GF ++ R+ G++ Y E+++ R + D DG+V K Sbjct: 242 WQTMGQLLEAGFLLDPQDRKNTLERYRRRCADIDGVIQAYLEIEAARDEIGCDCDGVVVK 301 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD Q++LG PRW +++KF +QA++ + ID+ +GRTG LTP A L+PV I G Sbjct: 302 VDAIEQQRRLGSTTHHPRWAVAYKFPARQATSIIRKIDVNVGRTGALTPTALLDPVEIAG 361 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 A I+ ATLHN D I+ L DIR GD VL++RAG+VIP ++ +I +R PD+ Sbjct: 362 ATISRATLHNADEIERL-----------DIREGDTVLIERAGDVIPHILRVIQEKRPPDS 410 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 PF FP CP+C ++ R RCT AC A+ E L HF +R A +IE Sbjct: 411 TPFCFPGQCPVCNAQAFRPEGE------VVSRCTNS-ACLARLKESLLHFGARRAMDIEH 463 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG+ ++ + +R AD++ L + + S TNL+++I Sbjct: 464 LGEAVVEQLVDRK----LVRELADLYRL------DVATLAELERLAQKSATNLHNAIQGS 513 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + L R +F+LGIR+VG +A LA++Y S Q L + +G Sbjct: 514 KGRGLSRLLFALGIRYVGEHVATILARHYGSMDRLEQAPE----------EELAEIFGIG 563 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 IAQ++ +++ P N +E L + + K V TG L+ + R + Sbjct: 564 PRIAQSVALYFRQPENRRQIEQLREVGVSMKEAGVTAEPRPLAGKTFVLTGGLEGLTRDE 623 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+E + ++G V++ +S+KTD ++VG +PGSK + A++LGV ++E F L+ + Sbjct: 624 AKELIVRVGGRVTSTVSKKTDFVVVGKDPGSKFDDAKRLGVPTLDEVAFKELVSR 678 >gi|332525978|ref|ZP_08402119.1| DNA ligase (NAD+) [Rubrivivax benzoatilyticus JA2] gi|332109529|gb|EGJ10452.1| DNA ligase (NAD+) [Rubrivivax benzoatilyticus JA2] Length = 686 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 247/717 (34%), Positives = 374/717 (52%), Gaps = 49/717 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S A + + L + +S+H YY P I D+EYD L + AI PDL P Sbjct: 1 MSPTSAAERAAELRRILSHHAHRYYVLDAPEIPDAEYDRLFQELQAIESEHPDLL---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI--EDLRKFITRIYRFWQKKDD-NSIFF 128 + P +I G++ L V H++ LS+ + F R+ R + DD + + Sbjct: 58 DSPTQRIIGQVLPGLVPVRHAVAMLSIRTETDTTAAGAEAFDARVRRELELGDDAPPVEY 117 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 E K DG I +RY G V AA RGDG +GEDV+ IR I IP L P ++EVR Sbjct: 118 AAELKFDGLAINLRYVAGLLVQAATRGDGETGEDVTHNIRTIGQIPLRLFGTAPPVLEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247 GEVY+ ++DF LN+ G K + NPRN A+G +R+L+ + + L+F+ +GLG+ Sbjct: 178 GEVYMRRDDFERLNERQREKGAKTFINPRNTAAGAVRQLDSRSLADKRLSFYAYGLGEVQ 237 Query: 248 -EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 L + G PVN G+V+++ + + R LP+DIDG+VYKV Sbjct: 238 GWEQPPTHSGTLDALAAFGLPVNGERAVVQGADGLVAFHRRIAAARDALPFDIDGVVYKV 297 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ +LQK+LG R PRW ++HK+ ++ TRL I+IQ+GRTG LTPVA+LEPV +GG Sbjct: 298 NDIALQKRLGFVTREPRWAVAHKYPAQEQMTRLNAIEIQVGRTGKLTPVAKLEPVFVGGT 357 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++NATLHN ++ + +RVGD V+V+RAG+VIP+VV + ER Sbjct: 358 TVSNATLHNLFELRR-----------KGVRVGDDVIVRRAGDVIPEVVGRVPGERAGYVP 406 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F P CP+C S V R+ HRC+GGL C+AQ+ + L HF R A +IEGL Sbjct: 407 NFRMPRQCPVCGSAVARERG------GIDHRCSGGLFCAAQRKQALLHFAGRRAMDIEGL 460 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D IR +++TL K+ + + S NL ++++ + Sbjct: 461 GDKLVDQLVD----GGLIRTLPELYTL------GVAKLSALERMAEKSAANLVAALDRSK 510 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RF+++LGIR VG A+ LA+++ L+ V VG Sbjct: 511 QTTLARFLYALGIRQVGEATAKDLARHFGGLDRVMDA----------SVEQLLEVRDVGP 560 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH----EKNVSSEIENKKLVFTGTLQKIQ 662 I+AQ+I F++ P N VE L + + K LV TGTL + Sbjct: 561 IVAQSIRTFFEQPHNREVVEQLRAAGIRWDEHEGAAVANAAALPLAGKTLVLTGTLPTLS 620 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +A+E + G V+ +S+KT ++ G+ GSKL+KA++LG+++++E+ LLQ Sbjct: 621 REQAKEMIEAAGGKVAGSVSKKTHYVVAGEEAGSKLDKARELGIEVLDEDGLRRLLQ 677 >gi|315223456|ref|ZP_07865313.1| NAD-dependent DNA ligase LigA [Capnocytophaga ochracea F0287] gi|314946629|gb|EFS98620.1| NAD-dependent DNA ligase LigA [Capnocytophaga ochracea F0287] Length = 662 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 233/705 (33%), Positives = 368/705 (52%), Gaps = 49/705 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L +E++ H+ YY P I D E+D + A+ A+P+ D N P + Sbjct: 2 KEKIQQLREELNEHNYNYYVLDNPTISDYEFDQKLKELQALEQAYPEF---YDENSPTVR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + S V H SL+ ++ EDL ++ RI + + I FT E K DG Sbjct: 59 VGGSVTKSFPTVVHEYRMYSLDNSYSKEDLEEWEQRIIKTLG---SDQINFTCELKYDGA 115 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I + YE GK A RGDG G+D++A +R I ++P L + PE +RGE+ + K Sbjct: 116 SIDLLYENGKLKQATTRGDGIQGDDITANVRTIRSVPLQLKGDYPERFYIRGEIVMPKKA 175 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN E IA G P+ NPRN ASG L+ + + R L+ ++ L K Q+E Sbjct: 176 FENLNKERIAAGEDPFMNPRNTASGSLKLQDTAEVAKRGLDCLLYFL--VGNTGIKSQFE 233 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+K R GF V N + ++ ++ + NE + R TLPY+ DG+V KVD + Q++LG Sbjct: 234 SLEKAREWGFKVPNISKLCHSTAEVMDFINEWDTKRHTLPYETDGVVVKVDSIAQQEELG 293 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++SPRW +++KF +Q T L I Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 294 YTSKSPRWAMAYKFKAEQVDTVLESISYQVGRTGAITPVANLKPVLLAGTVVKRASLHNA 353 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L DIR+GD V V++ GE+IPK+V + +++R DAQP + + CP Sbjct: 354 DQIEKL-----------DIRIGDSVYVEKGGEIIPKIVGVNLDKREVDAQPVKYITHCPE 402 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + +VR+ A H C C Q +++HF+SR A +IEGLG++ ++ F+ Sbjct: 403 CGTELVRNEGE------AQHYCPNAYGCPPQITGKIQHFISRKAMDIEGLGEETVEQLFR 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 A I AD++ + K+ + S N+ I K + I ER +F+ Sbjct: 457 ----AGIIHTYADLYEVTVE------KLLPLERMAQKSAENIVKGIQKSKEIPFERVLFA 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR+VG +A+ LA++Y + + L+ V +G+ IA +IV F+ Sbjct: 507 LGIRYVGETVAKKLARHYKTIEALENAT----------VEQLVEVDEIGNQIASSIVNFF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + N ++ L + ++ V +G R + + + Q G Sbjct: 557 ADDYNRQLIDRLKGYGLQFSINEQATEGQTDTLKGLTFVVSGVFHLYSREELKALIEQHG 616 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 V + +S KT+ +IVGDN G SK EKA+QLGVK+++EE+F ++ Sbjct: 617 GKVGSSISSKTNYVIVGDNMGPSKKEKAEQLGVKMISEEEFNAMI 661 >gi|152965283|ref|YP_001361067.1| DNA ligase, NAD-dependent [Kineococcus radiotolerans SRS30216] gi|190359261|sp|A6W7L4|DNLJ_KINRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|151359800|gb|ABS02803.1| DNA ligase, NAD-dependent [Kineococcus radiotolerans SRS30216] Length = 696 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 217/720 (30%), Positives = 346/720 (48%), Gaps = 39/720 (5%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +AR L +I YY + + D +YDAL+R A+ P L P+ Sbjct: 10 PSEARHRWEDLVAQIEAARFAYYVRNSSPLSDGQYDALERELRALEEQHPQL---RTPDS 66 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +GG + V H LSL+ ++ ++L + R+ R + EPK Sbjct: 67 PTQTVGGTFSTEFTTVDHPERMLSLDNAFSTDELSAWAARVEREVGAGA----RYLCEPK 122 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 IDG I + YE G+ V RGDG +GEDV+ +R + +P L+ PE +EVRGEV+ Sbjct: 123 IDGLAIDLVYEDGRLVRGVTRGDGRTGEDVTFNVRTVEDVPHRLTGADVPEFLEVRGEVF 182 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + F A+N ++ G+ P+ANPRNAA+G LR+ +P TR L VHG+G + Sbjct: 183 FHLDGFAAINAGLVEAGKPPFANPRNAAAGSLRQKDPRVTATRPLRMLVHGVGARRGMEN 242 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q +K+ G P + V+ +T + Y R + ++IDG+V KVD+ L Sbjct: 243 DTQSGAYEKLAAWGLPTSPRVKVVDTLDEVAEYVRFYGEHRHDVEHEIDGVVVKVDQVPL 302 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP A LEPV + G+ + A Sbjct: 303 QRRLGSTSRAPRWAIAYKYPPEEVTTSLLDIQVNVGRTGRVTPFAVLEPVKVAGSTVAMA 362 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN + + + +GD V+V++AG+VIP+V+ +V R + F P Sbjct: 363 TLHNASEV-----------VRKGVLIGDTVVVRKAGDVIPEVLGPVVESRTGAEREFVMP 411 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C + + RC +C AQ ER+ H R +F++E LG + Sbjct: 412 TVCPECGTPLAHQR-----ADDVDIRCPNSRSCPAQLRERVFHLAGRGSFDVEALGDKAA 466 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + A I D+FTL G + L +++ R++ L Sbjct: 467 AALLQ----AGVIADEGDLFTLTEDDLVGVPLFTTKAGTVSANGRRLLANLHDRKDQPLW 522 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R + L IRHVG AR+LA + S + + VG IA+A Sbjct: 523 RVLVGLSIRHVGPTAARALADRFGSMEAIEAAT----------AEDIASAEGVGPTIAEA 572 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 +VE+ + V + +++ +E +V TG+L R +A+E V Sbjct: 573 VVEWLAVDWHRDVVRKWREAGVRMADERDESTPRTLEGLTIVVTGSLSGFSRDEAKEAVL 632 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731 G S+ +S+KT ++VG+ GSK +KA+QLGV +++EE F+ LL+ + ++ Sbjct: 633 SRGGKASSAVSKKTSFVVVGEAAGSKADKAEQLGVPVLDEEGFVALLEGGPDAVARPAEE 692 >gi|293571852|ref|ZP_06682868.1| DNA ligase, NAD-dependent [Enterococcus faecium E980] gi|291608106|gb|EFF37412.1| DNA ligase, NAD-dependent [Enterococcus faecium E980] Length = 679 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 235/720 (32%), Positives = 391/720 (54%), Gaps = 53/720 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ++I++A K L ++ YY KP + D YD AI +PDL S Sbjct: 5 EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 62 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++GG++ KVTH IP SL +++ E+L F R+ + + + + Sbjct: 63 -DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRV----VDYCC 117 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++RYE G FV A RGDG GE+++ ++ + ++P L + IEVRGE Sbjct: 118 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKEPMN--IEVRGE 175 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 ++ K F+ LN + A G+ +ANPRNAA+G LR+L+ R L+ F++ + + Sbjct: 176 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPM 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 AK QY+ L+++ +GF N R ++ + +Y E R LPY+IDG+V KV+EF Sbjct: 236 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ QLG ++PRW ++KF ++ T + +I+ +GRTG++TP A + PV + G ++ Sbjct: 296 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DYIK +DIR+ D VL+ +AG++IP+V +++++R D++ + Sbjct: 356 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVMDKRPKDSEEYQ 404 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S +V A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 405 LPTHCPVCGSELVHLDEE------VALRCINPK-CPAQMKEGLNHFVSRNAMNIDGLGPR 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ + + + AD++ L + + + + S N+ +I+ ++ S Sbjct: 458 VLEQMYDKK----LVADVADLYKLTEEELLT------LDKIKEKSANNILTAIDNSKDNS 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +ER IF LGIRHVGA+ A+ LA+++ + ++ D+ S+I + +GDIIA Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSRS----------DYESIIALDTIGDIIA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664 ++V ++ N + L + + + V S + K +V TG L ++ R Sbjct: 558 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTRLTRE 617 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 +A+E + LG V+ +S+KTDI++ G++ GSKL KAQ+LG+++ E+Q L + ++ Sbjct: 618 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMAEALAKSHSA 677 >gi|257884412|ref|ZP_05664065.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,501] gi|257898303|ref|ZP_05677956.1| NAD-dependent DNA ligase [Enterococcus faecium Com15] gi|257820250|gb|EEV47398.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,501] gi|257836215|gb|EEV61289.1| NAD-dependent DNA ligase [Enterococcus faecium Com15] Length = 678 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 235/720 (32%), Positives = 391/720 (54%), Gaps = 53/720 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ++I++A K L ++ YY KP + D YD AI +PDL S Sbjct: 4 EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 61 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++GG++ KVTH IP SL +++ E+L F R+ + + + + Sbjct: 62 -DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRV----VDYCC 116 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++RYE G FV A RGDG GE+++ ++ + ++P L + IEVRGE Sbjct: 117 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKEPMN--IEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 ++ K F+ LN + A G+ +ANPRNAA+G LR+L+ R L+ F++ + + Sbjct: 175 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPM 234 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 AK QY+ L+++ +GF N R ++ + +Y E R LPY+IDG+V KV+EF Sbjct: 235 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ QLG ++PRW ++KF ++ T + +I+ +GRTG++TP A + PV + G ++ Sbjct: 295 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DYIK +DIR+ D VL+ +AG++IP+V +++++R D++ + Sbjct: 355 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S +V A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 404 LPTHCPVCGSELVHLDEE------VALRCINPK-CPAQMKEGLNHFVSRNAMNIDGLGPR 456 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ + + + AD++ L + + + + S N+ +I+ ++ S Sbjct: 457 VLEQMYDKK----LVADVADLYKLTEEELLT------LDKIKEKSANNILTAIDNSKDNS 506 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +ER IF LGIRHVGA+ A+ LA+++ + ++ D+ S+I + +GDIIA Sbjct: 507 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSRS----------DYESIIALDTIGDIIA 556 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664 ++V ++ N + L + + + V S + K +V TG L ++ R Sbjct: 557 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTRLTRE 616 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 +A+E + LG V+ +S+KTDI++ G++ GSKL KAQ+LG+++ E+Q L + ++ Sbjct: 617 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMAEALAKSHSA 676 >gi|228956728|ref|ZP_04118514.1| DNA ligase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229143090|ref|ZP_04271523.1| DNA ligase [Bacillus cereus BDRD-ST24] gi|296501121|ref|YP_003662821.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis BMB171] gi|228640363|gb|EEK96760.1| DNA ligase [Bacillus cereus BDRD-ST24] gi|228802916|gb|EEM49748.1| DNA ligase [Bacillus thuringiensis serovar pakistani str. T13001] gi|296322173|gb|ADH05101.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis BMB171] Length = 669 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 246/715 (34%), Positives = 386/715 (53%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q D ++ + E Sbjct: 58 DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDSANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD++ L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|161598439|ref|YP_120478.2| NAD-dependent DNA ligase LigA [Nocardia farcinica IFM 10152] Length = 710 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 228/721 (31%), Positives = 360/721 (49%), Gaps = 42/721 (5%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + R L +E+ H YY PII D E+DAL R + PDL P+ P Sbjct: 25 EDRVRWQRLAEEVREHQFRYYVRDAPIISDGEFDALLRELQELEDRHPDL---RTPDSPT 81 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +GG V H LSL+ ++++++LR + R+ + + + E KID Sbjct: 82 QLVGGGFATDFTPVDHLERMLSLDNVFDVDELRAWAARVE----AETGPDLHYLCEVKID 137 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV----LSLNIPEIIEVRGEV 191 G + + YE+GK V AA RGDG +GEDV+ R I +P +PE++EVRGEV Sbjct: 138 GVALNLVYERGKLVRAATRGDGRTGEDVTLNARTIEDVPGELSAGGEFPVPELLEVRGEV 197 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+ DF ALN ++A G+ PYANPRN A+G LR+ +P R L HGLG+ Sbjct: 198 YLRLADFEALNAAIVAEGKPPYANPRNTAAGSLRQKDPAVTARRRLRMICHGLGRIEGYT 257 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q+E + + G PV+ R+ ++ R + ++IDG V KVDE S Sbjct: 258 PASQFEAYRALSAWGLPVSEHTRRVRGIDAVIERVAYWGEHRHDIEHEIDGQVIKVDETS 317 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG +R+PRW I++K+ ++A+T+L I++ +GRTG +TP A +EPV I G+ + Sbjct: 318 LQRRLGATSRAPRWAIAYKYPPEEATTKLRAIEVNVGRTGRVTPFAVMEPVVIAGSTVAM 377 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN +K + + +GD V +++AG+VIP+V+ +V+ R + F Sbjct: 378 ATLHNASEVKR-----------KGVLIGDTVTIRKAGDVIPEVLGPVVDARTGAEREFVM 426 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C + + + + A RC +C AQ ER+ H R AF+IE LG + Sbjct: 427 PTHCPECGTELAPE-----KEGDADIRCPNQRSCPAQLRERVYHVAGRSAFDIEALGYEA 481 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +S +I D+F L + +T+ N G + L ++++ ++ L Sbjct: 482 AIDLLQS----GAIGDEGDLFDLDEARLLTTSLFTNKNGSLSANGKRLLENLDAAKDRPL 537 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R + L IRHVG AR+LA + S + Q L VG IA Sbjct: 538 WRVLVGLSIRHVGPTAARALAAEFGSMERIEQA----------SVDELAATDGVGPTIAA 587 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 A+ E++ + V + ++++ +E +V TG+LQ R A+E + Sbjct: 588 AVAEWFTVDWHRAIVAKWRAAGVRMVDERDESIERTLEGLSIVVTGSLQGFSRDGAKEAI 647 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDD 730 G + +S+KT ++VGD PG+K KA++LGV I++EE F+ LL + + + Sbjct: 648 LARGGKAAGSVSKKTAFVVVGDAPGAKAAKAEELGVPILDEEGFVRLLAEGPAAVAAEEP 707 Query: 731 D 731 + Sbjct: 708 E 708 >gi|218230787|ref|YP_002365135.1| NAD-dependent DNA ligase LigA [Bacillus cereus B4264] gi|254781552|sp|B7H4U8|DNLJ_BACC4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218158744|gb|ACK58736.1| DNA ligase (NAD(+)) [Bacillus cereus B4264] Length = 669 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 246/715 (34%), Positives = 386/715 (53%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q D ++ + E Sbjct: 58 DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD++ L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMKYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|86142854|ref|ZP_01061293.1| DNA ligase [Leeuwenhoekiella blandensis MED217] gi|85830886|gb|EAQ49344.1| DNA ligase [Leeuwenhoekiella blandensis MED217] Length = 663 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 219/705 (31%), Positives = 358/705 (50%), Gaps = 47/705 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A++++ +L QE+ ++ YY KP + D +D + + P+ D N P Sbjct: 3 AQEKIEALRQELRQYNYEYYVLDKPQVDDYTFDQKLKELQEMEAKHPEF---YDANSPTL 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GGE+ + V H SL+ ++ EDL + RI + D ++ + E K DG Sbjct: 60 RVGGEVTKNFATVKHEHRMYSLDNSYSQEDLEDWEKRIKKLV----DGAVEYVCELKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I++ YE+G V A RGDG G+DV+ ++ I ++P L + P ++RGE+ + Sbjct: 116 ASISLTYEEGVLVRAVTRGDGVQGDDVTNNVKTIRSVPLKLKGDFPAKFDIRGEIVLPLA 175 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 F A+N E + G +PY+NPRN ASG L+ + ++ + + + Q+E Sbjct: 176 GFAAMNAERVEAGDEPYSNPRNTASGSLKLQDSAEVAKRPLECLLYSIVGENLDIASQFE 235 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+K R GF V ++ + + N R LPY+ DG+V KV+ F Q++LG Sbjct: 236 SLEKARSWGFKVPEVAKKTASTAETFEFLNYWDEHRHDLPYETDGVVIKVNSFRQQEELG 295 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A++PRW +++KF +QA T L I Q+GRTG +TPVA L PV + G ++ A+LHN Sbjct: 296 FTAKAPRWAMAYKFKTEQAETVLEKITYQVGRTGAITPVANLVPVQLAGTIVKRASLHNA 355 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L D+R GD V V++ GE+IPK+V + +R PD+ + S CP Sbjct: 356 DQIEKL-----------DVREGDHVYVEKGGEIIPKIVGVDFEQRDPDSTATEYISECPE 404 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + +VR A H C + C Q + R++HF+SR A +IEGLG + + Sbjct: 405 CGTTLVRQEGE------AQHYCPNDMGCPPQIIGRIQHFISRKAMDIEGLGGETVALLVN 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD++TL++ Q I + + S NL I + I ER +F Sbjct: 459 E----GLIKNYADLYTLKKEQ------ILPLERMAEKSADNLIKGIEASKQIPFERVLFG 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR+VG +AR LAK + + A+ +L+ V +G IAQ++V F+ Sbjct: 509 LGIRYVGETVARKLAKQFKTIDALAEASE----------ETLVAVDEIGARIAQSVVSFF 558 Query: 617 QNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 N ++ L +N + +++ + V +G K+ R + ++ + G Sbjct: 559 SEEANQDLIKRLKDYGLQLELDASVLENQTDKLQGQTFVISGVFSKVSRTELKKLIEDNG 618 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 S +S KT+ ++ G+N G SKL+KA++LGV I++E+ FL +L Sbjct: 619 GKASGSISSKTNYLVAGENMGPSKLQKAEKLGVPIISEDDFLAML 663 >gi|317489959|ref|ZP_07948451.1| DNA ligase [Eggerthella sp. 1_3_56FAA] gi|316910957|gb|EFV32574.1| DNA ligase [Eggerthella sp. 1_3_56FAA] Length = 708 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 233/737 (31%), Positives = 371/737 (50%), Gaps = 53/737 (7%) Query: 1 MKKRQLIPIEALSIEQA----RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCD 56 M Q ++ ++ +A + +L +EI +H YY P I D+ +D+L R Sbjct: 1 MADEQQTLLDEQALAEATSDPAARIDALRREIEHHSYLYYANDAPEISDAAFDSLMRELR 60 Query: 57 AIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR 116 + A P+L DP+ P ++GG + V H+ SL+ ++++L +I R+ Sbjct: 61 ELEAAHPELI---DPSSPTQRVGGYVGEQFAPVRHARRMYSLDNAMDLDELDAWIERVTE 117 Query: 117 FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176 + + + E KIDG+ I + YE G+ + AA RGDG +GEDV+A +R + +P Sbjct: 118 AFGRM----VPVVCELKIDGSSIALTYEGGRLMRAATRGDGTTGEDVTANMRTVKDVPLR 173 Query: 177 LSL-------NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP 229 L + +E+RGEVY+ K+ F ALN + G++ +ANPRNAA+G LR+ +P Sbjct: 174 LREGALGGLRDADAPVELRGEVYMPKSSFDALNAAAVENGKQAFANPRNAAAGSLRQKDP 233 Query: 230 T-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM 288 + R L+ F++ + + A+GQ+E+L +R GF VN V T + ++ Sbjct: 234 SITANRDLSTFIYAVADERALNAEGQWELLAWLREAGFHVNPDVELCQTREEVHAFCERA 293 Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348 + R LPY+IDG+V KV+ F+ Q+ +G AR+PRW ++ KF ++ +T L DI +Q+GR Sbjct: 294 VARREDLPYEIDGVVVKVNSFAQQESMGYTARAPRWAVAFKFPPEEKTTLLRDITVQVGR 353 Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408 TG LTPVA L+PV + G+ + ATLHNED ++ +D+RVGD V+V++AG+ Sbjct: 354 TGKLTPVAELDPVVVAGSTVARATLHNEDEVQR-----------KDVRVGDTVIVRKAGD 402 Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 VIP+V+ ++ R DA+ + P CP C S V+R+ RC + C AQ Sbjct: 403 VIPEVLGPVLALRPADAEAWQMPRTCPSCGSPVIREEGE------VDFRCIS-IDCPAQA 455 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA-DIFTLQRRQQTSTTKIENI 527 LERL H+ SR A +I+G+G++ + +S + D L K Sbjct: 456 LERLLHWASRGAMDIDGMGEEIVSRLVESGRLSDVADYYTLDEVELSLLDMGRVNKDGEP 515 Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587 + G L +I++ R R +F LGIRHVG IA LA Y S + + Sbjct: 516 IRLGSTVAKKLVAAIDESRTRPFARALFGLGIRHVGKTIAELLAAAYPSIEALMEASE-- 573 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVS 644 L + VG IA++ F + P N +E L + + Sbjct: 574 --------EDLAAIDGVGPKIARSAYLFLRTPDNAAVIERLRSHGVALADKAADEGEQLP 625 Query: 645 SEIENKKLVFTGTL--QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702 + V TG+L + R +A + GA VS +S+KT ++ G+ GSK +KA Sbjct: 626 QTLAGLTFVLTGSLVESGMTRDEAGAALKARGAKVSGSVSKKTSFVVAGEAAGSKYDKAV 685 Query: 703 QLGVKIMNEEQFLFLLQ 719 LGV +++E L +L+ Sbjct: 686 ALGVPVLDEAALLRILE 702 >gi|229171138|ref|ZP_04298732.1| DNA ligase [Bacillus cereus MM3] gi|228612316|gb|EEK69544.1| DNA ligase [Bacillus cereus MM3] Length = 669 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 245/715 (34%), Positives = 387/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A++ + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKQRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q DD ++ + E Sbjct: 58 DSPSIRVGGMVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LE V + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEAVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD+++L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|229101110|ref|ZP_04231876.1| DNA ligase [Bacillus cereus Rock3-28] gi|228682238|gb|EEL36349.1| DNA ligase [Bacillus cereus Rock3-28] Length = 669 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 247/715 (34%), Positives = 387/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q DD ++ + E Sbjct: 58 DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +EVRGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIPLRLNEEV--TLEVRGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+ R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDTKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 ISSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPNLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD++ L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKSINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKSADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|126737638|ref|ZP_01753368.1| DNA ligase, NAD-dependent [Roseobacter sp. SK209-2-6] gi|126721031|gb|EBA17735.1| DNA ligase, NAD-dependent [Roseobacter sp. SK209-2-6] Length = 749 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 297/758 (39%), Positives = 428/758 (56%), Gaps = 60/758 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 PI LS +A++EL+ L+ I D ++ + I D YD KRR + FP L Sbjct: 4 PISDLSENEAQEELNELKLLIWSADRLHHTHDISEISDGAYDREKRRLKELVDTFPKLRP 63 Query: 68 SEDP--NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 + + +G K++H+IP LSL + D+ F I + + D S Sbjct: 64 QAEKILDS----VGAPAASGFGKISHAIPMLSLGNAFEDGDVADFTKGIRNYLGQSADQS 119 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + FT EPKIDG +++RYE G+ V+ A RGDG +GEDV+ R I IP+VL+ PEI+ Sbjct: 120 LAFTAEPKIDGLSLSLRYENGRLVHGATRGDGSTGEDVTENARTIADIPQVLTGA-PEIL 178 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY+S DF LN G K +ANPRNAA+G LR+L+ R L FF + G Sbjct: 179 EVRGEVYMSHADFATLNARQEEQGGKSFANPRNAAAGSLRQLDAEVTRARPLRFFAYSWG 238 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + SE AK Q+E ++++ LGF N + ++++Y ++ R+TL YDIDG+VY Sbjct: 239 ELSEPLAKTQFEAIERLSVLGFQTNELTALCTSVEEMIAHYRRIEEQRATLGYDIDGVVY 298 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++ +LQ +LG RA +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV +G Sbjct: 299 KVNDMALQARLGFRATTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVG 358 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +++NATLHNEDYI+G D G+ +RGG++IRVGD V + RAG+VIPKV D+ + +R + Sbjct: 359 GVVVSNATLHNEDYIQGRDNKGEEIRGGKEIRVGDWVQIYRAGDVIPKVADVDIRKRTGN 418 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 PF+FP+ CP C S VR+ A RCTGGL C AQ +E+LKHFVSR AF+I+ Sbjct: 419 EIPFAFPTTCPECGSEAVREEG------DAVRRCTGGLICPAQAIEKLKHFVSRKAFDID 472 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG +QL+ FF+ D IR P DI+ L++R + K++N G+G S NL+ +I + Sbjct: 473 GLGAKQLEMFFEDTD--LPIRTPVDIYRLEQRDGENLAKLKNRHGWGAQSAENLFAAITQ 530 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ-------------------------- 578 +R I L R IF LGIRHVG A+ LA ++ S+ Sbjct: 531 KRRIPLGRMIFGLGIRHVGEVAAKDLALHFGSWADLAAAVDLAREAALAHRAADLAEEKE 590 Query: 579 -----------------NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 + + A + W LI + +G + ++ + N Sbjct: 591 RQAAAAEGRRARIKETRDLEVSRLEVSASARESWEDLIGIDGIGATVGLSLSDALANVEE 650 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 ++AL+ E+ S + K +VFTG L+K+ R +A+ LGA VS + Sbjct: 651 RSVIDALVHELEIE-APAAPAQESPVAGKTVVFTGKLEKMTRDEAKARAEALGAKVSGSV 709 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 S+KTDI++ G GSK +KAQ+LG++I++EE +L + Sbjct: 710 SKKTDILVAGPGAGSKEKKAQELGIEILDEEGWLARIA 747 >gi|160899029|ref|YP_001564611.1| NAD-dependent DNA ligase [Delftia acidovorans SPH-1] gi|254781308|sp|A9BZW4|DNLJ_DELAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|160364613|gb|ABX36226.1| DNA ligase, NAD-dependent [Delftia acidovorans SPH-1] Length = 703 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 253/720 (35%), Positives = 380/720 (52%), Gaps = 56/720 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++ +L +++ YY P + D EYD + ++ A+ A+P+L P+ Sbjct: 22 PDKVLAKVQALRAQLNQWAHEYYVLDTPTVPDGEYDRVFQQLQALEGAYPELV---TPDS 78 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSL----EKIWNIEDLRKFITRIYRFWQKKDD-NSIFF 128 P ++ G + L V H++P LS+ + + F RI + + + + + Sbjct: 79 PTQRVIGAVLDGLMPVRHAVPMLSIRTETDNEATGAE--AFDARIRKELELAEGAPPVEY 136 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI--PEIIE 186 EPK DG + +RYE G+ V A RGDG GEDV+ IR I IP L P ++E Sbjct: 137 VAEPKFDGLAMNLRYENGRLVQATTRGDGEVGEDVTHNIRTIRKIPLSLPEGKGVPPVVE 196 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK 245 VRGEVY+ + DF+ LN+ A G K +ANPRNAA+G +R+L+ R L+FF +GLG+ Sbjct: 197 VRGEVYMGRADFVKLNERQQAAGGKSFANPRNAAAGSVRQLDSGIAAQRPLSFFAYGLGE 256 Query: 246 TSE-----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 + Y MLQ +R GFPV V A +V+++ M + R+TLPY+ID Sbjct: 257 ITPAAQGGPDFVTHYAMLQTLRDWGFPVAPQVCIAKGAAELVAFHQRMGAERATLPYEID 316 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+VYKV+ + Q+QLG +R PRW ++HK+ ++ TR+ IDIQ+GRTG LTPVARL P Sbjct: 317 GVVYKVNSLAQQRQLGFVSREPRWAVAHKYPAEEMPTRMEGIDIQVGRTGKLTPVARLAP 376 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V +GG ++TNATLHN I+ + +R GD V+V+RAG+VIP+VV + + Sbjct: 377 VAVGGVIVTNATLHNLFEIRK-----------KRVRTGDTVVVRRAGDVIPEVVGRVPGD 425 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R F P+ CPIC S V R A HRCTGGL C AQ+ E + HF +R A Sbjct: 426 RPAYVPNFRMPAACPICGSAVARPKGE------ANHRCTGGLFCPAQRKEAILHFAARRA 479 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +IEGLG + +D +R D++ L + ++ + S N+ D Sbjct: 480 MDIEGLGDKLVDQLVD----GHVVRTLPDLYRL------GLVALASLDRMAEKSAQNVLD 529 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 ++ K + +L RF+F LGIR VG A+ LA+++ L++ Sbjct: 530 ALEKSKKTTLSRFLFGLGIRQVGESTAKDLARHFGQLDAIMDA----------SVEQLLQ 579 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQ 659 V VG I+A++I F+ P N VE L G + + + +V TGTL Sbjct: 580 VRDVGPIVAESIHTFFAQPHNREVVEQLRACGVHWEEGAAREQTAQPLAGMTVVLTGTLP 639 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R +A+E + GA VS +S+KT ++ G GSKL KA++LGV +++E L LL Sbjct: 640 TLGRDQAKEMLEAAGAKVSGSVSKKTSYVVAGAEAGSKLAKAEELGVTVLDEAGMLALLA 699 >gi|300781381|ref|ZP_07091235.1| NAD-dependent DNA ligase LigA [Corynebacterium genitalium ATCC 33030] gi|300533088|gb|EFK54149.1| NAD-dependent DNA ligase LigA [Corynebacterium genitalium ATCC 33030] Length = 674 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 219/719 (30%), Positives = 359/719 (49%), Gaps = 51/719 (7%) Query: 12 LSIEQARK----ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 ++ Q + + + L +E+ H D YY P+I D+E+D + RR + P+LA Sbjct: 1 MTEAQVSEDLLRQWNELAKEVRRHRDLYYNGD-PVITDAEFDEMFRRLQQLEEDHPELAV 59 Query: 68 SEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P+ P ++G + + V H P +SL+ +++ E+L ++T+ Sbjct: 60 ---PDSPTKEVGAAPTSTAFEDVEHLEPMMSLDNVFSAEELSDWLTKT----------PG 106 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 + E KIDG I + YE G+ AA RGDG GE+++A R I IP L+ + P ++E Sbjct: 107 PYLTELKIDGVSIDLVYENGQLTRAATRGDGRVGENITANARVIDDIPHELTGDFPALLE 166 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245 VRGEV+I DF LN+ G KP+ANPRN A+G LR+ +P R L HG+G Sbjct: 167 VRGEVFIRPEDFPELNELRQKEGGKPFANPRNTAAGGLRQKDPEKVRNRKLRMICHGIGA 226 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + Q++ +K+ G PV+ ++A T + R +++DGLV K Sbjct: 227 REGVEFSSQHDAYEKLAAWGLPVSEYTKRAETAEEVQKTVEYWADHRHDAIHEMDGLVIK 286 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ + Q+QLG +R+PRW I++K+ ++ +T+L DI + +GRTG TP A LEPV + G Sbjct: 287 VDDLAAQRQLGFTSRAPRWAIAYKYPPEEVTTKLKDIAVSVGRTGRATPFAVLEPVFVSG 346 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + ++ ATLHN+ +K + + +GD V+V++AGE+IP+V+ + + R Sbjct: 347 STVSMATLHNQHEVKR-----------KGVLIGDTVVVRKAGEIIPEVLGPVADLRDGTE 395 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + F FP CP+C +++ + A RC +C AQ +RL++ SR AF+IE Sbjct: 396 KEFVFPENCPVCGTKLA-----PAKEGDADWRCPNTRSCPAQLGQRLEYLASRGAFDIEA 450 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG++ + + D+FTL ++ G + S L ++ + Sbjct: 451 LGEKGAQDLI----ASGVLIDEGDLFTLTESDLEKSSVYTTKAGTVNASGKKLLANLEQA 506 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + L R + +L IRHVG AR+LA Y S L VG Sbjct: 507 KEKELWRVLVALSIRHVGPTAARALASRYGSMGKLLDA----------SVDDLADTDGVG 556 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 IIA++ E+++ + V ++ +E +V TG+L+ R Sbjct: 557 GIIAESFKEWFEVEWHRDIVRKWGAAGVNMEDE-ASDLEQTLEGLTVVVTGSLENFSRDG 615 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 A+E + G + +S+KTD ++VG+N GSK KA+ LG+ I++E+QF LL+ + Sbjct: 616 AKEAILSRGGKAAGSVSKKTDYVVVGENAGSKETKARDLGITILDEDQFRTLLETGDAE 674 >gi|229095009|ref|ZP_04226005.1| DNA ligase [Bacillus cereus Rock3-29] gi|229113962|ref|ZP_04243388.1| DNA ligase [Bacillus cereus Rock1-3] gi|228669421|gb|EEL24837.1| DNA ligase [Bacillus cereus Rock1-3] gi|228688339|gb|EEL42221.1| DNA ligase [Bacillus cereus Rock3-29] Length = 669 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 246/715 (34%), Positives = 386/715 (53%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q DD ++ + E Sbjct: 58 DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+ R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDTKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 ISSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPNLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD++ L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKSINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKSADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|124267002|ref|YP_001021006.1| DNA ligase (NAD+) [Methylibium petroleiphilum PM1] gi|166215820|sp|A2SGT2|DNLJ_METPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|124259777|gb|ABM94771.1| DNA ligase (NAD+) [Methylibium petroleiphilum PM1] Length = 677 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 240/715 (33%), Positives = 366/715 (51%), Gaps = 53/715 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E + L +++ YH YY P I D+EYD L A+ A P L P+ P Sbjct: 6 EDPAARAAQLREQLEYHAHRYYVLDAPEIPDAEYDRLFTELQALEAAHPGL---RTPDSP 62 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED-----LRKFITRIYRFWQKKDD-NSIFF 128 ++ G + L V H++P LS I D KF + + D + + Sbjct: 63 TQRVIGAVLEGLSAVRHAVPMLS---IKTETDTTPTGALKFDAAVRNALKLPPDAPPLRY 119 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 E K DG I +RY+ G+ V AA RGDG +GEDV+ + I ++P+ L ++EVR Sbjct: 120 AAELKFDGLAINLRYQAGRLVQAATRGDGETGEDVTHTVGTIESVPKQLRGITAPVLEVR 179 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247 GEV++ ++DF ALN+ G K + NPRNAA+GI+R+L+ + + +FF +GLG Sbjct: 180 GEVFMRRDDFEALNERQREAGLKTFVNPRNAAAGIVRQLDASIARQRPLSFFAYGLGDVQ 239 Query: 248 -EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 +L + LG PV+ + +++ + + R LP+DIDG+VYKV Sbjct: 240 GWDVPPTHAGLLDALAALGLPVDAHRTVVEGGEALAAFHAGIAAERDALPFDIDGVVYKV 299 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 DE +LQ+QLG ++R PRW ++HK+ ++ ST+L I+IQ+GRTG LTPVA+L+PV +GG Sbjct: 300 DERALQQQLGFKSREPRWAVAHKYPAQEQSTQLAGIEIQVGRTGKLTPVAKLQPVFVGGT 359 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++NATLHN ++ + IR+GD V+V+RAG+VIP+VV + R Sbjct: 360 TVSNATLHNRFELRR-----------KGIRIGDTVIVRRAGDVIPEVVGRVPVPRTAYIP 408 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F P CP+C S+ +R+ +RC+GGL C+AQ+ + L HF R +IEGL Sbjct: 409 NFRMPRACPVCGSQALRERG------SVDYRCSGGLFCAAQRKQALLHFAGRRMMDIEGL 462 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ IR +++ L K+ + GD S NL ++ + Sbjct: 463 GDKLVEQLVD----GGIIRTLPELYRL------GVAKLVALERMGDKSAANLVAALEASK 512 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RF+FSLGIRH+G A+ LA+++ + L+ V VG Sbjct: 513 ATTLARFLFSLGIRHIGEATAKDLARHFGALDRVMDA----------SVEQLLEVNDVGP 562 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRH 664 ++AQ++ F+ P N VE L + K V TGTL + R Sbjct: 563 VVAQSLRTFFDQPHNREVVEQLRAAGVHWDEHSGEADLTPRPLAGKTFVLTGTLPSLGRE 622 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + G V+ +S+KTD ++ G+ GSKLEKAQ LGV +++E LL Sbjct: 623 AAKELIEAAGGKVAGSVSKKTDYVVAGEEAGSKLEKAQALGVAVIDEAALRALLD 677 >gi|229107967|ref|ZP_04237594.1| DNA ligase [Bacillus cereus Rock1-15] gi|228675470|gb|EEL30687.1| DNA ligase [Bacillus cereus Rock1-15] Length = 669 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 247/715 (34%), Positives = 386/715 (53%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q D ++ + E Sbjct: 58 DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+LNP R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLNPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD++ L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|81373659|sp|Q5YRS7|DNLJ2_NOCFA RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 2 gi|54017744|dbj|BAD59114.1| putative DNA ligase [Nocardia farcinica IFM 10152] Length = 683 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 227/717 (31%), Positives = 358/717 (49%), Gaps = 42/717 (5%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 L +E+ H YY PII D E+DAL R + PDL P+ P +G Sbjct: 2 RWQRLAEEVREHQFRYYVRDAPIISDGEFDALLRELQELEDRHPDL---RTPDSPTQLVG 58 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G V H LSL+ ++++++LR + R+ + + + E KIDG + Sbjct: 59 GGFATDFTPVDHLERMLSLDNVFDVDELRAWAARVE----AETGPDLHYLCEVKIDGVAL 114 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV----LSLNIPEIIEVRGEVYISK 195 + YE+GK V AA RGDG +GEDV+ R I +P +PE++EVRGEVY+ Sbjct: 115 NLVYERGKLVRAATRGDGRTGEDVTLNARTIEDVPGELSAGGEFPVPELLEVRGEVYLRL 174 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN ++A G+ PYANPRN A+G LR+ +P R L HGLG+ Q Sbjct: 175 ADFEALNAAIVAEGKPPYANPRNTAAGSLRQKDPAVTARRRLRMICHGLGRIEGYTPASQ 234 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E + + G PV+ R+ ++ R + ++IDG V KVDE SLQ++ Sbjct: 235 FEAYRALSAWGLPVSEHTRRVRGIDAVIERVAYWGEHRHDIEHEIDGQVIKVDETSLQRR 294 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PRW I++K+ ++A+T+L I++ +GRTG +TP A +EPV I G+ + ATLH Sbjct: 295 LGATSRAPRWAIAYKYPPEEATTKLRAIEVNVGRTGRVTPFAVMEPVVIAGSTVAMATLH 354 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N +K + + +GD V +++AG+VIP+V+ +V+ R + F P+ C Sbjct: 355 NASEVKR-----------KGVLIGDTVTIRKAGDVIPEVLGPVVDARTGAEREFVMPTHC 403 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + + + + A RC +C AQ ER+ H R AF+IE LG + Sbjct: 404 PECGTELAPE-----KEGDADIRCPNQRSCPAQLRERVYHVAGRSAFDIEALGYEAAIDL 458 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 +S +I D+F L + +T+ N G + L ++++ ++ L R + Sbjct: 459 LQS----GAIGDEGDLFDLDEARLLTTSLFTNKNGSLSANGKRLLENLDAAKDRPLWRVL 514 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 L IRHVG AR+LA + S + Q L VG IA A+ E Sbjct: 515 VGLSIRHVGPTAARALAAEFGSMERIEQA----------SVDELAATDGVGPTIAAAVAE 564 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 ++ + V + ++++ +E +V TG+LQ R A+E + G Sbjct: 565 WFTVDWHRAIVAKWRAAGVRMVDERDESIERTLEGLSIVVTGSLQGFSRDGAKEAILARG 624 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731 + +S+KT ++VGD PG+K KA++LGV I++EE F+ LL + + + + Sbjct: 625 GKAAGSVSKKTAFVVVGDAPGAKAAKAEELGVPILDEEGFVRLLAEGPAAVAAEEPE 681 >gi|257895732|ref|ZP_05675385.1| NAD-dependent DNA ligase [Enterococcus faecium Com12] gi|257832297|gb|EEV58718.1| NAD-dependent DNA ligase [Enterococcus faecium Com12] Length = 678 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 235/720 (32%), Positives = 391/720 (54%), Gaps = 53/720 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ++I++A K L ++ YY KP + D YD AI +PDL S Sbjct: 4 EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 61 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++GG++ KVTH IP SL +++ E+L F R+ + + + + Sbjct: 62 -DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRV----VDYCC 116 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++RYE G FV A RGDG GE+++ ++ + ++P L + IEVRGE Sbjct: 117 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKEPMN--IEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 ++ K F+ LN + A G+ +ANPRNAA+G LR+L+ R L+ F++ + + Sbjct: 175 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGSM 234 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 AK QY+ L+++ +GF N R ++ + +Y E R LPY+IDG+V KV+EF Sbjct: 235 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ QLG ++PRW ++KF ++ T + +I+ +GRTG++TP A + PV + G ++ Sbjct: 295 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DYIK +DIR+ D VL+ +AG++IP+V +++++R D++ + Sbjct: 355 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S +V A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 404 LPTHCPVCGSELVHLDEE------VALRCINPK-CPAQMKEGLNHFVSRNAMNIDGLGPR 456 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ + + + AD++ L + + + + S N+ +I+ ++ S Sbjct: 457 VLEQMYDKK----LVADVADLYKLTEEELLT------LDKIKEKSANNILTAIDNSKDNS 506 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +ER IF LGIRHVGA+ A+ LA+++ + ++ D+ S+I + +GDIIA Sbjct: 507 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSRS----------DYESIIALDTIGDIIA 556 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664 ++V ++ N + L + + + V S + K +V TG L ++ R Sbjct: 557 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTRLTRE 616 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 +A+E + LG V+ +S+KTDI++ G++ GSKL KAQ+LG+++ E+Q L + ++ Sbjct: 617 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMAEALAKSHSA 676 >gi|228919228|ref|ZP_04082598.1| DNA ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840335|gb|EEM85606.1| DNA ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 669 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 246/715 (34%), Positives = 385/715 (53%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q D ++ + E Sbjct: 58 DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 ISSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGKEEEYRM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD++ L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|229154059|ref|ZP_04282184.1| DNA ligase [Bacillus cereus ATCC 4342] gi|228629339|gb|EEK86041.1| DNA ligase [Bacillus cereus ATCC 4342] Length = 669 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q DD ++ + E Sbjct: 58 DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSEALDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQQSLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD+++L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKEINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKNIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|193212122|ref|YP_001998075.1| DNA ligase, NAD-dependent [Chlorobaculum parvum NCIB 8327] gi|254781284|sp|B3QLI5|DNLJ_CHLP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|193085599|gb|ACF10875.1| DNA ligase, NAD-dependent [Chlorobaculum parvum NCIB 8327] Length = 674 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 226/716 (31%), Positives = 368/716 (51%), Gaps = 51/716 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + +A++E+ L EI H+ YY +KP I D E+D L R A+ FP+L P Sbjct: 1 MDKAKAQQEIGKLRAEIERHNRLYYLEAKPEISDFEFDKLLERLIALETEFPELV---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + V H P LSL ++I ++ F TR+ + + + + E Sbjct: 58 DSPSQRVGGGITKEFPTVIHREPMLSLSNTYSIGEVSDFCTRVEKLVAAEGGGTPEYVAE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV--------LSLNIPE 183 K DG I++ Y G V + RGDG G++++A ++ IP+IP + Sbjct: 118 LKYDGVAISLFYRDGLLVRGSTRGDGRQGDEITANLKTIPSIPLRLQSAGGSLFDAAVNG 177 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243 +EVRGEVY+ K+DF LN+E + +ANPRNA +G L+ + ++ R FV Sbjct: 178 EVEVRGEVYMRKDDFERLNEERPE--EERFANPRNATAGTLKLQDSAEVARRRMSFVAYY 235 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 K + A L++++C+GF R I ++ E R TLPY+ DG+V Sbjct: 236 LKGHDGEAPTHLRRLEQLKCMGFMTGAAARLCKGMDEIANFIGEWSEKRWTLPYETDGVV 295 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 K++E L +LG A+SPRW I++K+ +QA T L + Q+GR G +TPVA L+P + Sbjct: 296 LKLNEVGLWDRLGATAKSPRWAIAYKYPAQQAKTVLQGVVFQVGRLGTITPVAELKPTKL 355 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G+ ++ +TLHN D I+ L +R+GD V+++++GEVIPKVV ++++ER Sbjct: 356 AGSTVSRSTLHNFDEIERL-----------GVRIGDHVMIEKSGEVIPKVVSVVLDERPA 404 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + PS CP+C +++ R + C C AQ+ R+ HF SR+A +I Sbjct: 405 ETAEIEAPSECPVCGTKLERHEGE------VSWYCPNEEGCPAQKRGRILHFASRNALDI 458 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 + LG+ + + + D+++L + Q S + S N+ D++ Sbjct: 459 QNLGESLVSQLVER----GFVSDAGDLYSLTQEQLAS------LDRMAAKSAQNVLDALE 508 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K + S R +F+LGIRHVGA AR LA S + L VP Sbjct: 509 KSKKQSYARLLFALGIRHVGAATARELAHACPSIDRLREMGE----------EELAAVPD 558 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQ 662 +G +IA +I +F+ P +E L P EK V++ E + ++FTG L++ Sbjct: 559 IGPVIAASIRDFFAKPWVAAMLEKLAAAGLPMQAGEEKALVNTNFEGQSVIFTGGLERHV 618 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+E V + G + + +S+KT +++ G GSKLEKA +LGV++++E++F +L Sbjct: 619 RQQAEEMVRERGGKIVSSVSKKTTLVVAGKEAGSKLEKAMKLGVRVIDEDEFERML 674 >gi|75906538|ref|YP_320834.1| NAD-dependent DNA ligase LigA [Anabaena variabilis ATCC 29413] gi|123745307|sp|Q3MGE7|DNLJ_ANAVT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|75700263|gb|ABA19939.1| NAD-dependent DNA ligase [Anabaena variabilis ATCC 29413] Length = 676 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 229/712 (32%), Positives = 369/712 (51%), Gaps = 55/712 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K + L + + YY P++ D+ YD L R + P+L P+ P +I Sbjct: 9 KRVEELRRLLQQASYAYYVLDAPVMEDAVYDQLYRELQQLEIQHPELV---TPDSPTQRI 65 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G V H+IP SLE +N+E+L+ + R R + + E KIDG+ Sbjct: 66 GERPATQFLSVRHNIPLYSLENAFNVEELQAWDQRWRR---QVAPTEAEYVAELKIDGSA 122 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGEVYISK 195 I + YE G V A RGDG +GED++ +R I +IP LS + +EVRGE ++ Sbjct: 123 IALTYENGILVRGATRGDGVTGEDITQNVRTIRSIPLRLSFDGIENIGKVEVRGEAFLPL 182 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL---GKTSEIFA 251 F +N+E G + +ANPRNAA+G LR+L+ R L+FF + L G A Sbjct: 183 EVFKQINEERQKAGEQLFANPRNAAAGTLRQLDSKIVARRRLDFFAYTLHISGMDDASIA 242 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q+E L+ ++ +GF VN+ + + + YY + R LPY DG+V K++ F L Sbjct: 243 NTQWEALELLQKMGFRVNSQHQLCQSLAEVADYYRYWDTERLNLPYMTDGVVLKLNSFKL 302 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+QLG R PRW ++ K+ ++A TR+ +I + +GRTG LTP+A++ PV + G ++ A Sbjct: 303 QEQLGFTQRFPRWAVALKYPAEEAPTRVENIAVNVGRTGALTPLAQMRPVQLAGTTVSRA 362 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I L DIR+GD V+V++AGE+IP+VV ++ R D QPF P Sbjct: 363 TLHNSDRIAQL-----------DIRIGDTVIVRKAGEIIPEVVRVLKELRPVDTQPFIMP 411 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+C VVR+ A RC +C+A ++H+VSRDA +I+G+G++ + Sbjct: 412 THCPVCGQPVVRETGE------AVTRCVNA-SCAAILKGSIEHWVSRDALDIKGVGEKLV 464 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 E + AD+++L Q + G+ S L ++I + +N Sbjct: 465 HQLVDKE----LVHSVADLYSLTNEQLF------VLERMGEKSAQKLIEAIAQSKNQPWS 514 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R ++ LGIRHVG+ A+ L++ Y + + + + + +G IAQ+ Sbjct: 515 RVLYGLGIRHVGSVNAQLLSEKYRAVAELSSAKQS----------DIAGIYGIGAEIAQS 564 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + ++++ N +E L E N + ++ K V TGTL ++R +A+ Sbjct: 565 VYQWFRISANQRLIERLQAAGLQFANTEEISAVDNANLKLVGKTFVITGTLPTLKRDEAK 624 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + G ++ +S+KTD ++VG++ GSKLEKAQ LG+K ++E + L +L Sbjct: 625 ALIQKAGGKITESVSKKTDYLVVGEDAGSKLEKAQTLGIKQLSEAELLKILA 676 >gi|295107089|emb|CBL04632.1| DNA ligase, NAD-dependent [Gordonibacter pamelaeae 7-10-1-b] Length = 731 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 234/716 (32%), Positives = 361/716 (50%), Gaps = 49/716 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +L +EI +H YY P I D +D+L R + A P+L DP+ P + Sbjct: 45 AARIEALRREIEHHTYLYYAQDAPEISDGAFDSLMRELRELEAAHPELV---DPSSPTQR 101 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + V H+ SL+ ++E+L +I R+ + + + E KIDG+ Sbjct: 102 VGGYVGEQFAPVRHARRMYSLDNAMDLEELDAWIERVTEAFGRM----VPVVCELKIDGS 157 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-------IIEVRGE 190 I + YE G+ V AA RGDG +GEDV+A +R + +P L +E+RGE Sbjct: 158 SIALTYEDGRLVRAATRGDGTTGEDVTANMRTVKDVPLRLREAALGGLRDAAAPVELRGE 217 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VY+ K+ F ALN +A G++ +ANPRNAA+G LR+ +P R L+ F++ + + Sbjct: 218 VYMPKSSFDALNAAAVANGKQAFANPRNAAAGSLRQKDPAITANRDLSTFIYAVADERAL 277 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +GQ+E+L +R GF VN V T + ++ R LPY+IDG+V KV+ F Sbjct: 278 AVEGQWELLAWLREAGFHVNPDVELCETREAVHAFCERAIERREALPYEIDGVVVKVNAF 337 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+ +G AR+PRW ++ KF ++ +T L DI +Q+GRTG LTPVA +EPV + G+ + Sbjct: 338 AQQESMGYTARAPRWAVAFKFPPEEKTTLLHDITVQVGRTGKLTPVAEMEPVVVAGSTVA 397 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHNED ++ +D+RVGD V+V++AG+VIP+V+ ++ R DA + Sbjct: 398 RATLHNEDEVQR-----------KDVRVGDTVIVRKAGDVIPEVLGPVLALRPADAAVWR 446 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C S V+R+ RC + C AQ LERL H+ SR A +I+G+G++ Sbjct: 447 MPATCPSCGSPVIREEGE------VDFRCIS-IDCPAQALERLLHWASRGAMDIDGMGEE 499 Query: 490 QLDFFFKSEDPAFSIRIPA-DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + +S D L K + G L +I+ R Sbjct: 500 IVSRLVESGRLTDVADYYTLDEVELALLDMGRVNKDGEPIRLGSTVAKKLVAAIDGSRAR 559 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 R +F LGIRHVG IA LA Y S + + L + VG I Sbjct: 560 PFSRALFGLGIRHVGKTIAELLAAAYPSIEALMEASE----------EDLAALDGVGPKI 609 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTL--QKIQR 663 A+++ F + P N +E L K ++ + +E V TG+L + R Sbjct: 610 ARSVYLFLRTPDNAAVIERLRKRGVAMADEAADPDEQLPQTLEGLTFVLTGSLVESGMTR 669 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A + GA VS +S+KT ++ G+ GSK +KA LGV +++E L +L+ Sbjct: 670 DEAGAALKARGAKVSGSVSKKTSYVVAGEAAGSKYDKAVTLGVPVLDEAALLRILE 725 >gi|146296740|ref|YP_001180511.1| DNA ligase, NAD-dependent [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166215569|sp|A4XK85|DNLJ_CALS8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145410316|gb|ABP67320.1| DNA ligase, NAD-dependent [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 673 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 238/702 (33%), Positives = 380/702 (54%), Gaps = 47/702 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 +K + L I+YHD YY P I D EYD L R + +P+ P+ P Sbjct: 5 IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYIF---PDSPTQ 61 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ +V H +P LSL +++ +L F R+ D N + +E KIDG Sbjct: 62 RVGGKVKEGFKEVVHRVPLLSLSNVFSEGELYDFDRRLRELLGTDDFN---YVVEYKIDG 118 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + + YE G FV A RGDG+ GEDV+ ++ I +IP L +I I VRGEV++ K+ Sbjct: 119 LSVALEYENGLFVRGATRGDGNVGEDVTENLKTIRSIPLKLKDDIN--IVVRGEVFMPKD 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 +F+ LN E +ANPRNAA+G LR+L+P + + E K E Sbjct: 177 EFIKLNQEREENEEPLFANPRNAAAGSLRQLDPRITAQRKLDIFVFNVQWCEKELKTHDE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ ++ LGF V+ + +++ R LP++IDG V K+++ +L+ G Sbjct: 237 ALRYLKYLGFKVSPDYVVCSNIKEAYEAIKKVEEKRGLLPFEIDGAVVKLNQLALRDVAG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW +++KF ++ T+L+DI++ +GRTGILTP A LEPV I G++++ ATLHN Sbjct: 297 STAKSPRWAVAYKFPPEKKETKLIDIEVNVGRTGILTPTAVLEPVRISGSVVSRATLHNM 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI+ +DIR+GD V+V++A E+IP+VV+++ ++R + + F P CP+ Sbjct: 357 DYIR-----------QKDIRIGDTVVVQKAAEIIPEVVEVVFSKRTGNERIFEMPKKCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + V++ + A+RCTG C A+ + HFVSRDA +I G+G+ + F+ Sbjct: 406 CGADVIKFEDE------VAYRCTGV-ECPAKSYRLILHFVSRDAMDIAGMGEMIVKNLFE 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ PADI+ L+ + + FG S NL +I + L+R IF+ Sbjct: 459 R----GLIKTPADIYDLKFDDLVN------LERFGVKSTNNLLKAIEASKKRPLDRLIFA 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRH+G + A++LA++ S + L+++P G+ +A+++V F+ Sbjct: 509 LGIRHIGQKAAKTLAEHISSIDDLFTITE----------EELLKLPDFGEKMAKSVVTFF 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + +E L K ++ + ++ V TG L K R +A+E + LGA Sbjct: 559 RQDQTKHLIERLKKAGVNTVAEKKAKSD-ILKGYTFVLTGALSKYSRSQAKEILESLGAR 617 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 VS +S+KT +IVG++PGSKL KAQ+L VKI+ E+ F L+ Sbjct: 618 VSESVSKKTTAVIVGEDPGSKLTKAQELNVKILYEQDFERLI 659 >gi|227551668|ref|ZP_03981717.1| DNA ligase (NAD(+)) [Enterococcus faecium TX1330] gi|293377659|ref|ZP_06623848.1| DNA ligase (NAD(+)) [Enterococcus faecium PC4.1] gi|227179231|gb|EEI60203.1| DNA ligase (NAD(+)) [Enterococcus faecium TX1330] gi|292643659|gb|EFF61780.1| DNA ligase (NAD(+)) [Enterococcus faecium PC4.1] Length = 679 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 235/720 (32%), Positives = 391/720 (54%), Gaps = 53/720 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ++I++A K L ++ YY KP + D YD AI +PDL S Sbjct: 5 EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 62 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++GG++ KVTH IP SL +++ E+L F R+ + + + + Sbjct: 63 -DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRV----VDYCC 117 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++RYE G FV A RGDG GE+++ ++ + ++P L + IEVRGE Sbjct: 118 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKEPMN--IEVRGE 175 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 ++ K F+ LN + A G+ +ANPRNAA+G LR+L+ R L+ F++ + + Sbjct: 176 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGSM 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 AK QY+ L+++ +GF N R ++ + +Y E R LPY+IDG+V KV+EF Sbjct: 236 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ QLG ++PRW ++KF ++ T + +I+ +GRTG++TP A + PV + G ++ Sbjct: 296 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DYIK +DIR+ D VL+ +AG++IP+V +++++R D++ + Sbjct: 356 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 404 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S +V A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 405 LPTHCPVCGSELVHLDEE------VALRCINPK-CPAQMKEGLNHFVSRNAMNIDGLGPR 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ + + + AD++ L + + + + S N+ +I+ ++ S Sbjct: 458 VLEQMYDKK----LVADVADLYKLTEEELLT------LDKIKEKSANNILTAIDNSKDNS 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +ER IF LGIRHVGA+ A+ LA+++ + ++ D+ S+I + +GDIIA Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSRS----------DYESIIALDTIGDIIA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664 ++V ++ N + L + + + V S + K +V TG L ++ R Sbjct: 558 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTRLTRE 617 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 +A+E + LG V+ +S+KTDI++ G++ GSKL KAQ+LG+++ E+Q L + ++ Sbjct: 618 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMAEALAKSHSA 677 >gi|157826142|ref|YP_001493862.1| NAD-dependent DNA ligase LigA [Rickettsia akari str. Hartford] gi|166216231|sp|A8GPM9|DNLJ_RICAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157800100|gb|ABV75354.1| DNA ligase [Rickettsia akari str. Hartford] Length = 689 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 268/712 (37%), Positives = 411/712 (57%), Gaps = 29/712 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ +S +A+K L L +I+ ++ YY P++ D+EYD L + FP L Sbjct: 4 IDFISEAEAKKLLEELSCKIAAYNHAYYIEDNPLVSDAEYDQLVNINLKLEQQFPHLVLE 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 N P ++G ++ KVTH +P LSL ++ +D+R F+ RI F + + I Sbjct: 64 ---NSPSKEVGAKIANKFVKVTHQVPMLSLSNAFDEQDVRDFVDRIKNFLRLDEFAPI-- 118 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 EPKIDG + Y+ G + A RGDG+ GED++A I+ I P N PE +EVR Sbjct: 119 FCEPKIDGLSFSAIYKNGLLITGATRGDGYVGEDITANIKTIKNFPH-KIDNAPECLEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE+YI K DFL LN+E GR +ANPRNAA+G LR+L+ + R L +FV+ G T Sbjct: 178 GEIYIEKQDFLNLNEEQEEQGRDQFANPRNAAAGSLRQLDASITAKRPLKYFVYSGGVTE 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + A Q ++L K++ GF VN + + I ++Y +K+ R LPY+IDG+VYK++ Sbjct: 238 QNLASSQDQLLTKLKKFGFSVNEISKLTKSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +F LQ ++G ARSPR+ +HKF T+LL I +Q+GRTG LTPVA LEP+ IGG Sbjct: 298 DFELQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN I +D+++ D V ++RAG+VIPK+ + +R D Sbjct: 358 VSRATLHNFQEI-----------VRKDVQIKDYVFLQRAGDVIPKITGADIEKRPNDTIA 406 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P FCP C S++ RC GL C AQ ER++HFVS++A +I GLG Sbjct: 407 FEAPLFCPSCNSKLYY------VPEDIIIRCDNGLNCPAQHYERIRHFVSKNAMDIAGLG 460 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q++F I P DIF L++ + S K+EN+ G+G SV L +I K +N Sbjct: 461 RKQVEFLIAK----GLISNPLDIFFLKKNNEASLIKLENMDGWGQKSVEKLLKNIEKSKN 516 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +SL RFI++LGIRH+G + A+ LA+ + SY NF ++ + +++D + L + +GD Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLSKNDSDIYQKLNNLEGIGDK 576 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 I I+ F NI ++ L + ++ + + SS + K +VFTG+L I R + + Sbjct: 577 ILIDIIAFLDVKENIQLIKKLGEILNIEDYKETRAQSS-LTGKIVVFTGSLPTISRAEVK 635 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +LGA V+A +S TD+++ G + GSKL+KA++L +KI++EE++L L++ Sbjct: 636 ATAEKLGAKVAASVSSNTDLVVAGLDAGSKLQKAKELNIKIIDEEEWLTLIK 687 >gi|228937587|ref|ZP_04100225.1| DNA ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970474|ref|ZP_04131125.1| DNA ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977043|ref|ZP_04137446.1| DNA ligase [Bacillus thuringiensis Bt407] gi|228782660|gb|EEM30835.1| DNA ligase [Bacillus thuringiensis Bt407] gi|228789206|gb|EEM37134.1| DNA ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822068|gb|EEM68058.1| DNA ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938080|gb|AEA13976.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis serovar chinensis CT-43] Length = 669 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 246/715 (34%), Positives = 386/715 (53%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q D ++ + E Sbjct: 58 DSPSVRVGGTILDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD++ L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|42779416|ref|NP_976663.1| NAD-dependent DNA ligase LigA [Bacillus cereus ATCC 10987] gi|81411242|sp|Q73EM3|DNLJ_BACC1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|42735332|gb|AAS39271.1| DNA ligase, NAD-dependent [Bacillus cereus ATCC 10987] Length = 669 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 246/715 (34%), Positives = 389/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q DD ++ + E Sbjct: 58 DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDVNVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 ILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ A IR AD+++L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFE----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVKAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + +NV S K +V TG L+ + R + Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|296330120|ref|ZP_06872602.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673365|ref|YP_003865037.1| NAD-dependent DNA ligase [Bacillus subtilis subsp. spizizenii str. W23] gi|296152709|gb|EFG93576.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411609|gb|ADM36728.1| NAD-dependent DNA ligase [Bacillus subtilis subsp. spizizenii str. W23] Length = 668 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 242/715 (33%), Positives = 393/715 (54%), Gaps = 53/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E A++ L + I+ + YY +P + D+EYD L + AI PDL P Sbjct: 1 MDKETAKQRADELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDL---RTP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + + KVTH P LSL +N +D + R ++ + + + +E Sbjct: 58 DSPTQRVGGAVLEAFQKVTHGTPMLSLGNAFNDDD----LRDFDRRVRQAVGDDVAYNVE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG +GED++ ++ I IP + IEVRGE Sbjct: 114 LKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKM--KRDLSIEVRGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F LN+E I +P+ANPRNAA+G LR+L+P R L+ FV+ + + E+ Sbjct: 172 YMPKRSFETLNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + Q + L + +GF N ++ + +++ +E ++ R+ LPY+IDG+V KVD Sbjct: 232 VETQSQGLDFLDEIGFKTNQERKKCGSIEEVIALIDEFQAKRADLPYEIDGIVIKVDSLD 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG A+SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ Sbjct: 292 QQEELGFTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED IK +DIR+ D+V+VK+AG++IP+VV+++V +R + + FS Sbjct: 352 ASLHNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLVEQRTGEEKEFSM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 PTECPECGSELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ +R AD++ L + Q + G+ S NL SI K + SL Sbjct: 454 ITQLFEEN----LVRNVADLYKLTKEQVI------QLERMGEKSTENLISSIQKSKENSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIR +G++ A++LA ++ S +N + L+ + +G+ +A Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASK----------EELLAIDEIGEKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSP-----SIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A++ ++ + + L + + S K +V TG L+++ R+ Sbjct: 554 AVITYFHKEEMLDLLNELQELGVNTHYKGPKKVKAEESDSYFAGKTIVLTGKLEELSRND 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ + LG ++ +S+ TD++I G+ GSKL KAQ+L +++ NEEQ + L++ Sbjct: 614 AKAQIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEEQLMGELKK 668 >gi|183981708|ref|YP_001849999.1| NAD-dependent DNA ligase LigA [Mycobacterium marinum M] gi|254781377|sp|B2HIF0|DNLJ_MYCMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|183175034|gb|ACC40144.1| DNA ligase [NAD dependent] LigA [Mycobacterium marinum M] Length = 687 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 220/715 (30%), Positives = 350/715 (48%), Gaps = 44/715 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E R+ L +++ H YY P+I D+E+D L RR +A+ +P+L P Sbjct: 1 MTPEVLRQ-WQELAEQVREHQFRYYVRDAPVITDAEFDELLRRLEALEEQYPEL---RTP 56 Query: 72 NGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P +GG V H LSL+ +N E+L + RI+ +S + Sbjct: 57 DSPTQLVGGAGFATEFEPVEHLERMLSLDNAFNTEELTAWAGRIHADVG----DSAAYLC 112 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP----RVLSLNIPEIIE 186 E KIDG +++ YE G+ A+ RGDG +GEDV+ R I +P +PE++E Sbjct: 113 ELKIDGVALSLVYEGGRLTRASTRGDGRTGEDVTLNARTIEDVPERLSHSEDHRMPEVLE 172 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV+ DF ALN ++ G+ P+ANPRN+A+G LR+ +P R L HGLG Sbjct: 173 VRGEVFFRVADFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGH 232 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 T ++ ++ G PV+ G+ + R + ++IDG+V K Sbjct: 233 TEGFRPATLHQAYLALQAWGLPVSQHTTLVADLAGVQERIDYWGEHRHEVDHEIDGVVVK 292 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ +LQ++LG +R+PRW I++K+ ++A T+LLDI + +GRTG +TP A + PV + G Sbjct: 293 VDDVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAG 352 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + + ATLHN +K + + +GD V++++AG+VIP+V+ +V+ R Sbjct: 353 STVAQATLHNASEVKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSE 401 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + F P+ CP C + + + + A RC +C Q ER+ H SR+A +IE Sbjct: 402 REFVMPTTCPECGTPLAPE-----KEGDADIRCPNTRSCPGQLRERVFHVSSRNALDIEM 456 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG + A I D+F L + T G + L +++K Sbjct: 457 LGYEAGAALLS----ARVIGDEGDLFGLTEEELLRTDLFRTKAGDLSANGRRLLANLDKA 512 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + L R + +L IRHVG AR+LA + S L V VG Sbjct: 513 KAAPLWRVLVALSIRHVGPTAARALATEFGSIDAIVSATT----------EQLAAVEGVG 562 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 IA A+ E++ + VE + +V + +V TG+L R + Sbjct: 563 PTIASAVSEWFTVDWHREIVEKWRAAGVRMADERDDSVPRTLAGVTVVVTGSLPGFSRDE 622 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+E + G + +S+KT ++ GD PGSK +KA +LGV I++E+ F LL+Q Sbjct: 623 AKEAIVTRGGKAAGSVSKKTSYVVAGDAPGSKYDKAVELGVPILDEDGFRKLLEQ 677 >gi|324324305|gb|ADY19565.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis serovar finitimus YBT-020] Length = 669 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 245/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E +K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIVKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q DD ++ + E Sbjct: 58 DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 ILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ A IR AD+++L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFE----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + +NV S K +V TG L+ + R + Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|312622179|ref|YP_004023792.1| DNA ligase, nad-dependent [Caldicellulosiruptor kronotskyensis 2002] gi|312202646|gb|ADQ45973.1| DNA ligase, NAD-dependent [Caldicellulosiruptor kronotskyensis 2002] Length = 673 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 238/703 (33%), Positives = 379/703 (53%), Gaps = 47/703 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 +K + L I+YHD YY P I D EYD L R + +P+ P+ P Sbjct: 5 IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQ 61 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ +V H +P LSL ++N +L F R+ ++ + +E KIDG Sbjct: 62 RVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLG---TSNFDYVVEYKIDG 118 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + + YE G F+ A RGDG+ GEDV+ ++ I +IP L +I I VRGEV++ K+ Sbjct: 119 LSVALEYENGLFIRGATRGDGNVGEDVTENLKTIRSIPLRLKEDIS--IVVRGEVFMPKD 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 +F+ LN E +ANPRNAA+G LR+L+P + + E + E Sbjct: 177 EFIKLNQEREENEEPLFANPRNAAAGSLRQLDPRITAQRKLDIFVFNVQWCEKELETHAE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ ++ LGF V+ +++ R LP++IDG V K+++ L+ G Sbjct: 237 ALEFLKHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 E A+SPRW +++KF ++ T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN Sbjct: 297 ETAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI+ +DIR+GD V+V++A E+IP+VV+++ ++R + F P CP+ Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + V++ + A+RCTG C A+ + HFVSRDA +I G+G+ + F+ Sbjct: 406 CGADVIKFEDE------VAYRCTGV-ECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFE 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ PADI+ L+ + + FG S NL +I +N L+R I++ Sbjct: 459 K----GLIKTPADIYYLKFEDLVN------LERFGVKSTNNLLKAIQASKNRPLDRLIYA 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRH+G + A++LA++ S + L+ +P G+ +A+++V F+ Sbjct: 509 LGIRHIGQKAAKTLAEHISSIDDLFTITE----------EQLLSLPDFGEKMAKSVVTFF 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + +E L ++ + ++ V TG L K R++A+E + LGA Sbjct: 559 RQDQTKHLIERLKAAGVNTVSEKKAKSD-ILKGYTFVLTGALSKYSRNEAKEILESLGAK 617 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V+ +S+KT +IVG +PGSK KAQQLGVKI+NEE F L++ Sbjct: 618 VTESVSKKTTAVIVGQDPGSKFTKAQQLGVKILNEEDFEKLVK 660 >gi|229042193|ref|ZP_04189947.1| DNA ligase [Bacillus cereus AH676] gi|228727128|gb|EEL78331.1| DNA ligase [Bacillus cereus AH676] Length = 669 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 247/715 (34%), Positives = 386/715 (53%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q D ++ + E Sbjct: 58 DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T ++SY E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVISYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD++ L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKEIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|219667570|ref|YP_002458005.1| DNA ligase, NAD-dependent [Desulfitobacterium hafniense DCB-2] gi|254781313|sp|B8FP44|DNLJ_DESHD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219537830|gb|ACL19569.1| DNA ligase, NAD-dependent [Desulfitobacterium hafniense DCB-2] Length = 659 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 235/706 (33%), Positives = 368/706 (52%), Gaps = 49/706 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + + +L ++I + YY +P + D+EYDAL + + P+ P+ Sbjct: 1 MSDVSQRIEALREQIEEANYQYYGLDQPTLSDAEYDALLQELIRLEKEHPEFL---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + KV H+ LSL+ ++ DL +F R+ + + +E K Sbjct: 58 PSQRVGGYIAKEFPKVRHAEALLSLDNAFDAGDLLEFDRRVRSMV-----AEVEYVVELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG + + YE G V A RGDG GE+++A ++ IP IP L + ++VRGE Y+ Sbjct: 113 IDGLTVALTYEDGALVRGATRGDGEVGEEITANLKTIPAIPLRLRKQ-ADRLDVRGEGYM 171 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAK 252 K FL LN E G+ +ANPRNAA+G LR+L+ R L +F + + E Sbjct: 172 PKGSFLRLNQEREEAGQPLFANPRNAAAGSLRQLDSRITAQRKLGYFAYQVLTPEEGELA 231 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q +L ++ GF VN R + +++Y EM R PYDIDGLV KV++ + Q Sbjct: 232 SQTAVLDYLKEQGFSVNPEYRVFSAIEEVIAYCGEMVEKRHNYPYDIDGLVIKVNDIAQQ 291 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG A+SPRW I++KF +Q T + DI I++GRTG+LTP A L PV + G+ + AT Sbjct: 292 RELGFTAKSPRWAIAYKFPAEQVETVVEDIVIRVGRTGVLTPTAYLTPVFVAGSTVGRAT 351 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I+ +D+R+GD VL+++AG+VIP+VV I+ +R + F P Sbjct: 352 LHNLDNIR-----------AKDVRIGDHVLIQKAGDVIPEVVKILPEKRTGGERIFEMPE 400 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP CQS V+R+ AAHRCT + C A+Q E + HFVSR+A NI+GLG + Sbjct: 401 LCPECQSPVIREEGE------AAHRCTS-ITCPARQREAIIHFVSRNAMNIDGLGPAVIY 453 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + A I+ AD++ L+ + + G S NL +I + L Sbjct: 454 QLLE----AGLIKDAADLYALEYD------ALVPLERLGKKSAENLLKAIEDSKERGLAP 503 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 IF LGIRHVG + + LA+ Y + ++ + L +P VG +AQ++ Sbjct: 504 LIFGLGIRHVGEKAGKILAQKYGTMEDLEKA----------QVEELQEIPDVGPAMAQSV 553 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 +F+Q + L + +H K +V TG+LQ+ RH + + + Sbjct: 554 AQFFQQESTHHFLNKLRQAGVVMSAQHSAK-PQIFAGKSIVVTGSLQRWDRHYVETMIEE 612 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G ++ +S+KT ++ G+ GSKL KA++LG+ +++EE+F LL Sbjct: 613 FGGKAASSVSKKTAFVVAGEKAGSKLAKAKELGIPVLSEEEFAELL 658 >gi|288927843|ref|ZP_06421690.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 317 str. F0108] gi|288330677|gb|EFC69261.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 317 str. F0108] Length = 665 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 218/710 (30%), Positives = 355/710 (50%), Gaps = 49/710 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E+ + + L +++ +H+ YY + P + D E+D L R + P+ DPN Sbjct: 1 MEEIK-RIEELREQLHHHNYLYYVQNSPTLSDQEFDRLMRELQDLEAKHPE---VYDPNS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G +++ +V H LSL +N +++ + + + E K Sbjct: 57 PTQRVGSDLSTGFTQVKHKYAMLSLANTYNEQEVASWYATVSKDLG---GQPFEVCCELK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 DG I++ YE+G+ V A RGDG G+DV+A +R I IP VL P E+RGE+ Sbjct: 114 YDGLSISLTYEQGRLVRAVTRGDGEQGDDVTANVRTIRAIPLVLPGTGYPNEFEIRGEIL 173 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + F LN ++ G ANPRNAA G L+ +P + + ++ + Sbjct: 174 MPWKVFEQLNVKLEKAGETLLANPRNAAVGALKSHDPRLVAKRKLDAYLYYLLGDDLPSD 233 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 G YE L+ GF V+ G+ +A + I + N + R LP DG+V KV+ Q Sbjct: 234 GHYENLKAAETWGFKVSQGMHKATSLEQIYEFINHWDTARHDLPVATDGIVLKVNSLRQQ 293 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +QLG A+SPRW I++KF ++ TRL ++ Q+GRTG +TPVA +EPV + G + AT Sbjct: 294 QQLGFTAKSPRWAIAYKFKAERVCTRLNEVTFQVGRTGAVTPVANMEPVLLAGTTVKRAT 353 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 L+NED+I+ L D+ +GD V V++ GE+IPK+V + V+ R P+ QP F S Sbjct: 354 LNNEDFIRSL-----------DLHIGDNVFVEKGGEIIPKIVGVDVSHRSPNLQPVHFIS 402 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S +VR AA+ C C Q R++HF++R A NI+ +G + +D Sbjct: 403 NCPECGSPLVRYAGE------AAYYCPNDTGCPPQIKGRIEHFIARKAMNIDSIGPETVD 456 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 +F+ +R AD++ ++ Q G S + I + ER Sbjct: 457 DYFRR----GIVRNVADLYEIRTEQING-------DGTRQKSAQKIVKGIQDSVSTPFER 505 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F+LGIR VG A+ LAK++ S L+ V VG +IA+++ Sbjct: 506 VLFALGIRFVGETTAKLLAKHFKSIDALMVATP----------EQLVEVEGVGTVIAESV 555 Query: 613 VEFYQNPRNICAVEALLKEVSPSIG--RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 V F+ + N+ +E L + ++ S ++ K +V +G ++ R + +E + Sbjct: 556 VRFFHDEVNLNIIERLRQYGLQMSQSVDQQQPASEKLAGKNIVISGVFEQHSRDEYKEMI 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + G + +S KT I+ G N G SK++KAQQLG+ +++E FL +L+ Sbjct: 616 ERNGGKNVSSISSKTSFILAGANMGPSKMQKAQQLGIDMIDESAFLKMLE 665 >gi|293376177|ref|ZP_06622422.1| DNA ligase (NAD(+)) [Turicibacter sanguinis PC909] gi|292645164|gb|EFF63229.1| DNA ligase (NAD(+)) [Turicibacter sanguinis PC909] Length = 669 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 247/708 (34%), Positives = 369/708 (52%), Gaps = 53/708 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L + ++ ++ YY KP + D EYD L + + P+L P + Sbjct: 10 KLRIEELTKLLTQYNHEYYVLDKPSVSDREYDRLMQELMELEEKHPELK---SNTSPTVR 66 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ K+ H P LSL +N DLR F TR+ + + E KIDG Sbjct: 67 VGGKVLEGFNKIEHEKPMLSLSNAFNEGDLRDFDTRVKKV-----SPKATYVCELKIDGL 121 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +T+ Y G FV A RGDG GED+S ++ I TIP ++ N P +EVRGEVY+SK Sbjct: 122 AVTLHYNNGAFVKGATRGDGVIGEDISENLKTIKTIPLHINNNQP--LEVRGEVYMSKAT 179 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 LN+E A G + +ANPRNAA+G LR+L+ R L F + + +++ E Sbjct: 180 LEKLNEERAAKGEELFANPRNAAAGSLRQLDSRIAAKRNLAMFCYAVPSAADLGCTTHEE 239 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 LQK+ LGF VN + ++ Y N + R LPY+IDG+V KV++ Q +LG Sbjct: 240 SLQKISELGFNVNPNRQVCENIDEVLEYINRWTNARFDLPYEIDGIVIKVNQLQEQDKLG 299 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T L DI +GRTG++TP A LEPV + G ++ ATLHNE Sbjct: 300 NTVKSPRWAIAYKFPAEEVETILTDIIFTVGRTGMVTPNAVLEPVRVAGTRVSRATLHNE 359 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DY+ RDIR+ DRV++++AGE+IP+VV +++ R+ D PF S CP Sbjct: 360 DYVTS-----------RDIRINDRVIIRKAGEIIPEVVKPVIDARNGDEIPFEMISTCPR 408 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR+ + C A+ +E L HFVSRDA NI+GLG + ++ F+ Sbjct: 409 CSSELVREAGEAD-------YYCLNIDCPARIVESLSHFVSRDAMNIDGLGIKVVEQLFE 461 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + I ADI+ L + Q + GD TNL ++I + SLE+ +F Sbjct: 462 HK----LIENVADIYRLTKEQL------LPLERMGDKKATNLLNAIEASKENSLEKLLFG 511 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVG++ A+ LA + + + + V VGD+IA +IV ++ Sbjct: 512 LGIRHVGSKTAKVLATQFENMDSLMDA----------KFDDFKVVAEVGDVIANSIVHYF 561 Query: 617 QNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 N+ ++ L + + + N K +V TGTL+ + R +A + Sbjct: 562 SQTANVELIDQLKELGLNMSYKGARLADANTEHVFFGKTVVLTGTLETLSRKEAGIKLES 621 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA VS +S TD +I G GSKL KAQQLGV +++E FL ++ + Sbjct: 622 LGAKVSGSISSNTDYLIAGAKSGSKLTKAQQLGVTVLDEATFLSMMNE 669 >gi|238026897|ref|YP_002911128.1| DNA ligase, NAD-dependent [Burkholderia glumae BGR1] gi|237876091|gb|ACR28424.1| DNA ligase, NAD-dependent [Burkholderia glumae BGR1] Length = 747 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 251/770 (32%), Positives = 377/770 (48%), Gaps = 94/770 (12%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 Q + + L QE+ + YY +P +LD+EYD L R I PD P+ P Sbjct: 12 SQPSERAAWLRQELERANHAYYVLDQPELLDAEYDRLFRELQQIEAEHPDFI---TPDSP 68 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----NSIFFT 129 ++GGE V H P LSL + ED+ F R+ K D + + Sbjct: 69 TQRVGGEAADGFTPVLHDAPMLSLNNGFTDEDIAAFDKRVADALGKAVDLAGTAEPVEYA 128 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-EIIEVR 188 E K DG I++RY GKF AA RGDG +GEDV+ +R I +IP L P +++VR Sbjct: 129 CELKFDGLAISLRYVHGKFTQAATRGDGTTGEDVTENVRTIKSIPLTLKGKHPPALLDVR 188 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEV + K DF LN+ A ++ +ANPRNAA+G LR+L+ R L+FF +G+G Sbjct: 189 GEVLMYKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKVTAQRPLSFFAYGIGVLD 248 Query: 248 E-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 +L LG PVN G++ ++ ++ R LPYDIDG+VYKV Sbjct: 249 GAPMPDTHSGLLDWYESLGLPVNRERAVVQGAEGLLDFFRKVGEKREALPYDIDGVVYKV 308 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + Q +LG +R+PR+ ++HKF ++A TRL+ I++Q+GRTG +TPVARLEPV +GGA Sbjct: 309 NRRDEQDRLGFVSRAPRFALAHKFPAQEARTRLVAIEVQVGRTGAITPVARLEPVFVGGA 368 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK-------------- 412 +TNATLHNED ++ +DIRVGD V+V+RAG+VIP+ Sbjct: 369 TVTNATLHNEDEVRR-----------KDIRVGDTVIVRRAGDVIPEVVGRDGPHAMQVRV 417 Query: 413 -----------------------VVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP-- 447 + + D + C + P Sbjct: 418 RFRGVRTVARRNRLRAAASSGRPMTWKPRLLKPTDRRGIRVRRGCLRPSLFEFVEQEPFR 477 Query: 448 ------------KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 + A RCTGGL C AQ+ + L HF R A +I+GLG++ +D Sbjct: 478 MPTECPVCGSRIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV 537 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + +R PAD+F L + + F + S NL DS+ K R+ +L RFI+ Sbjct: 538 EQN----LVRTPADLFHL------GFATLAALDRFAEKSAQNLLDSLEKARHTTLARFIY 587 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIRHVG A+ LAK++ + Q +L+ V VG ++A+++ +F Sbjct: 588 ALGIRHVGESTAKDLAKHFGALQPIMDA----------SIDALLEVNDVGPVVAESLHQF 637 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + N + L ++V G + K +V TGTL + R +A+ + G Sbjct: 638 FAEEHNRTVIAQLREKVDWPEGPPAPREPQGVLAGKTVVLTGTLPTLSRDEAKALLEAAG 697 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 A V+ +S+KTD ++ G GSKL KA++LG+ +++E+ LL+ + + Sbjct: 698 AKVTGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMHQLLKGESPS 747 >gi|213962174|ref|ZP_03390438.1| DNA ligase, NAD-dependent [Capnocytophaga sputigena Capno] gi|213955180|gb|EEB66498.1| DNA ligase, NAD-dependent [Capnocytophaga sputigena Capno] Length = 663 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 233/705 (33%), Positives = 368/705 (52%), Gaps = 49/705 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L +E++ H+ YY P I D E+D + A+ A P+ D N P + Sbjct: 2 KEKIQQLREELNQHNYNYYILDNPTISDYEFDQKLKELQALEQAHPEF---YDENSPTVR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + S V H SL+ ++ EDL ++ RI + + I FT E K DG Sbjct: 59 VGGTITKSFPTVVHEYRMYSLDNSYSKEDLEEWEQRIIKTLG---SDQINFTCELKYDGA 115 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I + YE GK A RGDG G+D++A +R I ++P L + PE +RGE+ + K Sbjct: 116 SIDLLYENGKLKQATTRGDGIQGDDITANVRTIRSVPLQLKGDYPERFYIRGEIVMPKKA 175 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN E IA G P+ NPRN ASG L+ + + R L+ ++ L K Q+E Sbjct: 176 FENLNKERIAAGEDPFMNPRNTASGSLKLQDTAEVAKRGLDCLLYFL--VGNTGVKSQFE 233 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+K R GF V N + ++ ++ + NE + R TLPY+ DG+V KVD + Q++LG Sbjct: 234 SLEKAREWGFKVPNISKLCHSTAEVMDFINEWDTKRHTLPYETDGVVIKVDSIAQQEELG 293 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++SPRW +++KF +Q T L I Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 294 YTSKSPRWAMAYKFKAEQVDTILESISYQVGRTGAITPVANLKPVLLAGTVVKRASLHNA 353 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L DIR+GD V V++ GE+IPK+V + +++R DAQP + + CP Sbjct: 354 DQIEKL-----------DIRIGDSVYVEKGGEIIPKIVGVNLDKREADAQPVQYITHCPE 402 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + ++R+ A H C +C Q +++HF+SR A +IEGLG++ ++ F+ Sbjct: 403 CSTELIRNEGE------AQHYCPNTYSCPPQITGKIQHFISRKAMDIEGLGEETVEQLFR 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 A I AD++ + K+ + S N+ I K + I ER +F+ Sbjct: 457 ----AGIIHTYADLYEVTVE------KLLPLERMAQKSAENIVKGIQKSKEIPFERVLFA 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR+VG +A+ LA++Y + + L+ V +G+ IA ++V F+ Sbjct: 507 LGIRYVGETVAKKLARHYKNIEALENAT----------IEQLVEVDEIGNQIATSVVNFF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + N ++ L E ++ V +G R + + + Q G Sbjct: 557 ADDYNRKLIDRLKSYGLQFALSEESTEGHTDTLKGLTFVVSGVFHLYSRDELKALIEQHG 616 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 V + +S KT+ +IVGDN G SK EKA+QLGVK+++EE+F L+ Sbjct: 617 GKVGSSISSKTNYVIVGDNMGPSKKEKAEQLGVKMISEEEFQSLI 661 >gi|229188563|ref|ZP_04315602.1| DNA ligase [Bacillus cereus ATCC 10876] gi|228594752|gb|EEK52532.1| DNA ligase [Bacillus cereus ATCC 10876] Length = 669 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 245/715 (34%), Positives = 385/715 (53%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E +K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIVKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q D ++ + E Sbjct: 58 DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 ISSHGESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD++ L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|319941620|ref|ZP_08015944.1| DNA ligase [Sutterella wadsworthensis 3_1_45B] gi|319804850|gb|EFW01704.1| DNA ligase [Sutterella wadsworthensis 3_1_45B] Length = 745 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 260/721 (36%), Positives = 392/721 (54%), Gaps = 43/721 (5%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 ALS +QA + LE E+ + YY +P + D+EYD A+ FP+L Sbjct: 48 DAAALSPDQAPARMHQLETELERWNYEYYVLDEPSVPDAEYDRAFNELKALEARFPELK- 106 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQK-KDDN 124 P ++GG + KV H +P LS+ E ++ F R+ +D Sbjct: 107 --SRTSPTLRVGGAVRTGFKKVRHDVPMLSIHTETDFSAAGAAAFDERVRSALGLSPEDP 164 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 + + E K DG +RYEKG A+ RGDG GEDV+A +R I TIP L+ +P+I Sbjct: 165 PVEYDCELKFDGLATNLRYEKGVLTEASTRGDGVEGEDVTANVRTIRTIPLRLNGKVPDI 224 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +EVRGE + K DFLALN A G KP+ANPRNAA+G LR+L+ + R L+F+ + L Sbjct: 225 LEVRGECIMHKADFLALNARQEAAGEKPFANPRNAAAGSLRQLDSSVTAQRTLHFYGYSL 284 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G+ SE FA+ Q +L + LGFPV + + ++++++ + R++LP++IDG+V Sbjct: 285 GEVSEPFAETQSGVLDRFAELGFPVAHMREVVKGPEALAAFHDKVAAARASLPFEIDGVV 344 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YKV+ L+++LG AR PRW +HK+ ++ T++L ID+Q+GRTG LTPVARL PV + Sbjct: 345 YKVNSLELEEELGFIAREPRWACAHKYPPEEVLTQVLGIDVQVGRTGRLTPVARLAPVYV 404 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++NATLHNED++ D+RVGD V+++RAG+VIP+++ ++ R Sbjct: 405 GGVTVSNATLHNEDHV----------VKDLDLRVGDTVVLRRAGDVIPEILRVVKERRPA 454 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + F P CPIC S V+RD K RCTGGL C AQ + HF +R A I Sbjct: 455 GTKVFEMPHVCPICGSAVIRDEEEKD------MRCTGGLVCPAQMKLSIVHFAARRAMGI 508 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE-----NILGFGDVSVTNL 538 +GLG++ +D ++ PAD+F L T+ T G + NL Sbjct: 509 DGLGEKIVDMLVDE----GLVKTPADLFGLTLEALTAPTTATAGSEKPEKRMGPKAAANL 564 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 SI + +L RF+F+LG RHVG A LA ++ + +L Sbjct: 565 LASIQASTHTTLARFVFALGCRHVGEATALGLANHFGTLSAIENA----------SMEAL 614 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 VP VG+++A++I F++ P N ++AL+ EK S + K V TGTL Sbjct: 615 TGVPDVGEVVAESIYAFFREPHNRTVIDALIARG-IRWPAVEKTAPSLVSGKTFVLTGTL 673 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R +A++ +T GA V+ +SR+T ++ G + GSKL KA++LG+ +++E + L LL Sbjct: 674 PTLSRDEAKDRLTAQGAKVAGSVSRRTWCVVAGADAGSKLSKAEELGIPVIDEAKLLMLL 733 Query: 719 Q 719 Sbjct: 734 D 734 >gi|262382012|ref|ZP_06075150.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_33B] gi|262297189|gb|EEY85119.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_33B] Length = 664 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 229/708 (32%), Positives = 354/708 (50%), Gaps = 50/708 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++ +L E+ H+ YY S P I D E+D + + + A P+ A DP+ P Sbjct: 2 VEAKIKALRDELERHNYNYYVLSAPTISDFEFDKMMKELQELEAAHPEFA---DPDSPTR 58 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G +++ +V H P LSL ++ +++R F R R + E K DG Sbjct: 59 RVGSDLSKEFEQVVHKYPMLSLGNTYSEDEIRDFYDRTVRSL----NEPFEIVAELKYDG 114 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195 T I++ YEKG+ A RGDG G+DV+A I+ I ++P L + PE E+RGEV + Sbjct: 115 TSISLTYEKGRLTRAVTRGDGTRGDDVTANIKTIRSVPLRLRGSDFPEEFEIRGEVLLPW 174 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 +F LN E +ANPRNAASG L++ NP + + A+G Y Sbjct: 175 AEFDRLNKEREEQEEPLFANPRNAASGTLKQQNPAIVASRKLDAYFYYLLGENLPAEGHY 234 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ R GF + + +R+ + I Y R LP DG+V KV+ Q+ L Sbjct: 235 ENLQAARAWGFKIPDVIRKCQSLQDIFDYIAYWDVERKNLPVATDGIVLKVNSLRQQRNL 294 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++SPRW I++KF ++A TRL + Q+GRTG +TPVA LEPV + G ++ A+LHN Sbjct: 295 GFTSKSPRWAIAYKFQAERAETRLNLVSFQVGRTGTVTPVANLEPVLLAGTVVKRASLHN 354 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434 D I+GL D+ +GD+V V++ GE+IPK+V + V R F C Sbjct: 355 ADIIEGL-----------DLHIGDQVYVEKGGEIIPKIVGVNVEARSMLMGDKVRFIRVC 403 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + +VR AAH C C Q R++HFV+R A NI + Sbjct: 404 PECGTPLVRPEGE------AAHYCPNESGCPPQIKGRIEHFVTRKAMNINIGPET----- 452 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + A ++ AD++TL + + + + S NL S+ + + + ER + Sbjct: 453 VEDLYNAGYVKDSADLYTLTVAD------LLRLERWAEKSAQNLMSSLEESKQVPFERVL 506 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F LGIR VG +A+ LA + S + Q L+ V +G+ IAQ+++ Sbjct: 507 FGLGIRFVGETVAKRLASAFHSIEALEQA----------SLEDLVAVDEIGERIAQSVLS 556 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 ++ + +N V L ++ E+ N S +++ +V +GT K R + + + Q Sbjct: 557 YFSDEKNRTLVNRLKEQGLRMAVSEEQLANRSEKLKGLTIVISGTFSKHSRDEYKAMIEQ 616 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 G S +S KTD I+ G+N G +KLEKA +LGVKI+NE+ FL +L+ Sbjct: 617 HGGKNSGSVSGKTDYILAGENMGPAKLEKAAKLGVKIINEDAFLNMLE 664 >gi|206967609|ref|ZP_03228565.1| DNA ligase, NAD-dependent [Bacillus cereus AH1134] gi|228950848|ref|ZP_04112971.1| DNA ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229068048|ref|ZP_04201356.1| DNA ligase [Bacillus cereus F65185] gi|229077651|ref|ZP_04210281.1| DNA ligase [Bacillus cereus Rock4-2] gi|229176884|ref|ZP_04304280.1| DNA ligase [Bacillus cereus 172560W] gi|206736529|gb|EDZ53676.1| DNA ligase, NAD-dependent [Bacillus cereus AH1134] gi|228606557|gb|EEK63982.1| DNA ligase [Bacillus cereus 172560W] gi|228705592|gb|EEL57948.1| DNA ligase [Bacillus cereus Rock4-2] gi|228715056|gb|EEL66923.1| DNA ligase [Bacillus cereus F65185] gi|228808777|gb|EEM55273.1| DNA ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 669 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 245/715 (34%), Positives = 385/715 (53%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E +K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIVKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q D ++ + E Sbjct: 58 DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 ISSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD++ L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|228906068|ref|ZP_04069957.1| DNA ligase [Bacillus thuringiensis IBL 200] gi|228853477|gb|EEM98245.1| DNA ligase [Bacillus thuringiensis IBL 200] Length = 669 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 247/715 (34%), Positives = 386/715 (53%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q D ++ + E Sbjct: 58 DSPSVRVGGTILDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ S Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVS 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD++ L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|294054681|ref|YP_003548339.1| DNA ligase, NAD-dependent [Coraliomargarita akajimensis DSM 45221] gi|293614014|gb|ADE54169.1| DNA ligase, NAD-dependent [Coraliomargarita akajimensis DSM 45221] Length = 711 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 217/702 (30%), Positives = 359/702 (51%), Gaps = 47/702 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 KE++ L I HD YY+ ++P I D YD LK R A+ P+L + + P + Sbjct: 54 KEIAQLRAAIEKHDRLYYKKAQPEIDDQAYDRLKARLTALESQNPEL---DFGSSPTQTV 110 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + S H P LSL+ +N ++L F R+ + + + ++ F +EPKIDG Sbjct: 111 GDDRLESFESYVHRKPMLSLDNTYNRDELIDFGKRLEKRF---PNQALNFLVEPKIDGVA 167 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 +++ YE+G+F+ A RG+G G+D++ +R I +P + P+I+EVRGE+Y+ ++F Sbjct: 168 VSLTYEEGQFIRAVSRGNGSEGDDITQNVRHIEGLPLQIEEA-PDILEVRGEIYMRHSEF 226 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG-KTSEIFAKGQYE 256 +N A G YANPRN A+G ++ LNP + R L+ ++G+G + + Q E Sbjct: 227 ERINAVREAAGEPLYANPRNLAAGTIKLLNPNEARARRLDIVLYGIGACEPQNYFVRQTE 286 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + Q+++ FPV ++ + E+ S R Y DG V K+D+F+LQ+Q G Sbjct: 287 IQQRLKEWHFPVLEKYWLSSNIVEAWASIEELDSRRQRFTYPTDGAVVKLDDFALQQQAG 346 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +++PRW I++KF ++A T L +I +QIGRTG +TPVA LEPV + G ++ ATLHNE Sbjct: 347 FTSKAPRWAIAYKFEAERAETLLKEISLQIGRTGAVTPVAILEPVQLAGTTVSRATLHNE 406 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ +DIR GD VLV++AGE+IP+V+ + +++R D+ F F Sbjct: 407 DEIRR-----------KDIRPGDTVLVQKAGEIIPQVLGVNISKRPADSTTFDFAQHLSS 455 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 RD ++V+ +Q L+HF SR +IE LG ++ Sbjct: 456 LGIDAERDPGEAVWRIVS-------KHDPIRQQRALQHFASRTCMDIENLGTAVVEQLVS 508 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 R AD++ LQ + F + S NL +++ + + + I Sbjct: 509 R----GLARTVADLYQLQLDDF------LQLEKFAEKSAQNLVEALEASKQRPVWQLIHG 558 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI HVG + A+ L ++ S A+ L + +G I+AQ+I ++ Sbjct: 559 LGIPHVGKQSAKDLEAHFESLDALARASE----------EQLEAIDGIGSIMAQSIHAWF 608 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 ++ N ++ L + + + K +V TGTL + R++A + G Sbjct: 609 EDSENAELLDRLRTYGLNFRSQRSEPTGGALAGKTVVLTGTLPTMTRNEATALIEAAGGR 668 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 S+ +S+KTD ++ G+ GSK KA++LGV I++E+ F L+ Sbjct: 669 TSSSVSKKTDYLLTGEAAGSKYTKAEKLGVPILDEDAFRALI 710 >gi|121998657|ref|YP_001003444.1| DNA ligase, NAD-dependent [Halorhodospira halophila SL1] gi|166215780|sp|A1WY80|DNLJ_HALHL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|121590062|gb|ABM62642.1| DNA ligase, NAD-dependent [Halorhodospira halophila SL1] Length = 711 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 247/738 (33%), Positives = 379/738 (51%), Gaps = 60/738 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + EQA++ ++ L EIS HD YY +P I D+EYDAL R + A+PDL + Sbjct: 7 TREQAQQRMAQLRGEISEHDYHYYVLDRPTISDAEYDALFRELQRLEAAYPDLV---SSD 63 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++ G V H P LSL+ + +DL F RI S+ +T EP Sbjct: 64 SPTQRVAGTAQEGFEAVVHDTPMLSLDNAFEADDLVDFDRRIRDRLGVA---SVVYTGEP 120 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEV 191 K+DG +++ Y+ G+ V A RGDGH+GEDV+A +R + ++P L + P +EVRGEV Sbjct: 121 KLDGISLSLTYQDGELVRAGTRGDGHTGEDVTANVRTLRSVPLRLRGDGYPGRLEVRGEV 180 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 I K DF LN + G +P+ANPRNAA+G LR+L+P R L F G+G + Sbjct: 181 VIRKEDFERLNQARLDAGERPFANPRNAAAGSLRQLDPRITARRPLTLFTFGVGDPLALG 240 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + +++L+ + GF + +Y + + R LP++IDG V+KVD+ + Sbjct: 241 VESHWQVLECLAGWGFRTTAPLEHLEGVSACQAYRDRLIEERDALPFEIDGAVFKVDDLA 300 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +++QLG AR+PRW ++ K ++A+T + I +GRTG +TP+ARL+PV + G + Sbjct: 301 VREQLGFTARAPRWALAFKLPAREATTVVEAIVPSVGRTGKITPLARLQPVEVSGVTVAR 360 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF-- 428 A+LHN D + + D+R GD V+V+RAG+VIP++ D+++ +R AQP+ Sbjct: 361 ASLHNADELARM-----------DVREGDTVMVRRAGDVIPQITDVVLAKRPEGAQPWRF 409 Query: 429 -SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 CP C S V R AAHRC GGL C AQ+ + HF SR A +I+GLG Sbjct: 410 EERVQACPECGSAVQRIEGE------AAHRCVGGLYCPAQREGAILHFASRRALDIDGLG 463 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ ++ + AD+F L Q + GD S NL ++++ R+ Sbjct: 464 EKIVEQLVAK----GLVVDLADLFRLGHAQLAG------LERMGDKSADNLLAALDRARS 513 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQE------------------INNII 588 +L RF+++LGI HVG AR LA+ Y + ++ Sbjct: 514 TTLARFLYALGIPHVGEVTARRLAEAAYGLMVAVPRGDRAALRAAAGLDAQTAITSEALL 573 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVS-S 645 L + VG ++A+AI F+ P N V+ L P E+ S S Sbjct: 574 RVMAAPADDLEAIEDVGPVVARAIAGFFAEPHNRQVVDHLCAAGVHWPEPDPPEQAESVS 633 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 + + V TGTL+ + R +A+ + G V+ +SRKTD ++ G + GSKL KA++LG Sbjct: 634 SLAGRAFVVTGTLETMTRDEAKAAIEACGGRVTGSVSRKTDYLVAGADAGSKLNKARELG 693 Query: 706 VKIMNEEQFLFLLQQYNT 723 V+++NE LL Sbjct: 694 VEVVNESGLRELLAGAGA 711 >gi|293557127|ref|ZP_06675681.1| DNA ligase, NAD-dependent [Enterococcus faecium E1039] gi|294614139|ref|ZP_06694060.1| DNA ligase, NAD-dependent [Enterococcus faecium E1636] gi|291592989|gb|EFF24577.1| DNA ligase, NAD-dependent [Enterococcus faecium E1636] gi|291600696|gb|EFF30994.1| DNA ligase, NAD-dependent [Enterococcus faecium E1039] Length = 679 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 234/720 (32%), Positives = 390/720 (54%), Gaps = 53/720 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ++I++A K L ++ YY KP + D YD AI +PDL S Sbjct: 5 EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 62 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++GG++ KV H IP SL +++ E+L F R+ + + + + Sbjct: 63 -DSPTQRVGGKVLEGFEKVIHDIPLYSLNDVFSKEELIAFDQRVQKAVGRV----VDYCC 117 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++RYE G FV A RGDG GE+++ ++ + ++P L + IEVRGE Sbjct: 118 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKEPMN--IEVRGE 175 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 ++ K F+ LN + A G+ +ANPRNAA+G LR+L+ R L+ F++ + + Sbjct: 176 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPM 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 AK QY+ L+++ +GF N R ++ + +Y E R LPY+IDG+V KV+EF Sbjct: 236 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ QLG ++PRW ++KF ++ T + +I+ +GRTG++TP A + PV + G ++ Sbjct: 296 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DYIK +DIR+ D VL+ +AG++IP+V +++++R D++ + Sbjct: 356 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 404 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S +V A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 405 LPTHCPVCGSELVHLDEE------VALRCINPK-CPAQMKEGLNHFVSRNAMNIDGLGPR 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ + + + AD++ L + + + + S N+ +I+ ++ S Sbjct: 458 VLEQMYDKK----LVADVADLYKLTEEELLT------LDKIKEKSANNILTAIDNSKDNS 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +ER IF LGIRHVGA+ A+ LA+++ + ++ D+ S+I + +GDIIA Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSRS----------DYESIIALDTIGDIIA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664 ++V ++ N + L + + + V S + K +V TG L ++ R Sbjct: 558 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTRLTRE 617 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 +A+E + LG V+ +S+KTDI++ G++ GSKL KAQ+LG+++ E+Q L + ++ Sbjct: 618 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMAEALAKSHSA 677 >gi|222529603|ref|YP_002573485.1| DNA ligase, NAD-dependent [Caldicellulosiruptor bescii DSM 6725] gi|254781543|sp|B9MK54|DNLJ_ANATD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|222456450|gb|ACM60712.1| DNA ligase, NAD-dependent [Caldicellulosiruptor bescii DSM 6725] Length = 673 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 238/703 (33%), Positives = 379/703 (53%), Gaps = 47/703 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 RK + L I+YHD YY P I D EYD L R + +P+ P+ P Sbjct: 5 IRKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQ 61 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ +V H +P LSL ++N +L F R+ ++ + +E KIDG Sbjct: 62 RVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELIG---TSNFDYVVEYKIDG 118 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + + YE G F+ A RGDG+ GEDV+ ++ I +IP L +I I VRGEV++ K+ Sbjct: 119 LSVALEYENGLFIRGATRGDGNVGEDVTENLKTIRSIPLRLKEDIS--IVVRGEVFMPKD 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 +F+ LN E +ANPRNAA+G LR+L+P + + E + + Sbjct: 177 EFIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNIQWCEKELETHAQ 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ ++ LGF V+ +++ R LP++IDG V K+++ L+ G Sbjct: 237 ALEFLKHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 E A+SPRW +++KF ++ T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN Sbjct: 297 ETAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI+ +DIR+GD V+V++A E+IP+VV+++ ++R + F P CP+ Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + V++ + A+RCTG C A+ + HFVSRDA +I G+G+ + F+ Sbjct: 406 CGADVIKFEDE------VAYRCTGV-ECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFE 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ PADI+ L+ + + FG S NL +I +N L+R I++ Sbjct: 459 K----GLIKTPADIYYLKFEDLVN------LERFGVKSTNNLLKAIQASKNRPLDRLIYA 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRH+G + A++LA++ S + L+ +P G+ +A+++V F+ Sbjct: 509 LGIRHIGQKAAKTLAEHISSIDDLFTITE----------EQLLCLPDFGEKMAKSVVTFF 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + +E L ++ + ++ V TG L K R++A+E + LGA Sbjct: 559 RQEQTRHLIERLKAAGVNTVSEKKAKSD-ILKGYTFVLTGALSKYSRNEAKEILESLGAK 617 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V+ +S+KT +IVG +PGSK KAQQLGVKI+NEE F L++ Sbjct: 618 VTESVSKKTTAVIVGQDPGSKFTKAQQLGVKILNEEDFEKLVK 660 >gi|225018630|ref|ZP_03707822.1| hypothetical protein CLOSTMETH_02580 [Clostridium methylpentosum DSM 5476] gi|224948624|gb|EEG29833.1| hypothetical protein CLOSTMETH_02580 [Clostridium methylpentosum DSM 5476] Length = 659 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 220/709 (31%), Positives = 355/709 (50%), Gaps = 51/709 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + A+ ++ L +++ YH YY P I D +YDA+ R + + FP+L Sbjct: 1 MDKKDAQLRVAELTKQLHYHSHRYYVLDDPEISDFDYDAMLRELETLEAEFPEL---RSD 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++GG+ + S KV H++ SL+ ++ ++ F R+ + +E Sbjct: 58 NSPTVRVGGQASNSFEKVAHAVQMGSLQDAFSDGEMLDFFRRVEEKIDHPV-----YVVE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG +++ Y G+F + RGDG GEDV+ +R I +IP L+ +P + EVRGEV Sbjct: 113 PKIDGLSVSLEYRDGEFFRGSTRGDGFIGEDVTQNLRTIRSIPLKLTRPLPYL-EVRGEV 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 ++ ++ FL + + P+ NPRNAA+G LR+ +P R L+ +V + + Sbjct: 172 FMPRDSFLKVVERQEIEEETPFKNPRNAAAGSLRQKDPKVVAERGLDIYVFNVQQIEGEE 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + L +R LGF V ++ + R P+DIDG V KVD+FS Sbjct: 232 LTSHKQSLDLLRGLGFKVIPRYNTFEDPQQVLDEIASIGDRRGEYPFDIDGAVVKVDDFS 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ LG A+ P+W ++ K+ ++ T L ID+ +GRTG LTPVA +P+ + G ++ Sbjct: 292 EREILGAGAKYPKWAMAFKYPPEEKETVLKQIDVNVGRTGALTPVALFDPIILAGTTVSR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A LHN+D+I +DIR+GD ++V++AG++IP+VV + + ++PF Sbjct: 352 AVLHNQDFI-----------TEKDIRIGDTIVVRKAGDIIPEVVSVAKHA--EQSEPFLL 398 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S VVR + AA RC C A +L + HF SR A NI+GLG Sbjct: 399 PEHCPVCGSEVVRVEDE------AAVRCENP-ECPATRLRNIIHFASRGAMNIDGLGTAN 451 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + + I+ AD++ L+R + F D SV NL SI K + L Sbjct: 452 ITALIDN----GLIKSSADLYYLKREDL------LKLERFADKSVDNLLSSIEKSKGNEL 501 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R +F LGIR VG +A+ L + Y + + + VG +IA Sbjct: 502 WRLLFGLGIRGVGQSVAKLLCEKYGNIDELMTAP----------AEEIDEIYGVGGVIAH 551 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 IV+++ P + +E + ++ V TGTL ++R +A+ + Sbjct: 552 NIVQYFALPHSRQLIERFQAAGVNPTAVPVQKGD-KLAGLTFVITGTLPTMKREEAKALI 610 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 Q G + +S+KT ++ G+ GSKL KAQ LGV +++EEQFL ++Q Sbjct: 611 EQNGGKATGSVSKKTSYLLAGEEAGSKLTKAQSLGVPVLDEEQFLKMIQ 659 >gi|89896634|ref|YP_520121.1| hypothetical protein DSY3888 [Desulfitobacterium hafniense Y51] gi|122997178|sp|Q24QL5|DNLJ_DESHY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|89336082|dbj|BAE85677.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 659 Score = 538 bits (1387), Expect = e-150, Method: Composition-based stats. Identities = 235/706 (33%), Positives = 368/706 (52%), Gaps = 49/706 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + + +L ++I + YY +P + D+EYDAL + + P+ P+ Sbjct: 1 MPDVSQRIEALREQIEEANYQYYGLDQPTLSDAEYDALLQELIRLEKEHPEFL---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + KV H+ LSL+ ++ DL +F R+ + + +E K Sbjct: 58 PSQRVGGYIAKEFPKVRHAEALLSLDNAFDAGDLLEFDRRVRALV-----AEVEYVVELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG + + YE G V A RGDG GE+++A ++ IP IP L + ++VRGE Y+ Sbjct: 113 IDGLTVALTYEDGALVRGATRGDGEVGEEITANLKTIPAIPLRLRKQ-ADRLDVRGEGYM 171 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAK 252 K FL LN E G+ +ANPRNAA+G LR+L+ R L +F + + E Sbjct: 172 PKGSFLRLNQEREEAGQPLFANPRNAAAGSLRQLDSRITAQRKLGYFAYQVLTPEEGELA 231 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q +L ++ GF VN R + +++Y EM R PYDIDGLV KV++ + Q Sbjct: 232 SQTAVLDYLKEQGFSVNPEYRVFSAIEEVIAYCGEMVEKRHNYPYDIDGLVIKVNDIAQQ 291 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG A+SPRW I++KF +Q T + DI I++GRTG+LTP A L PV + G+ + AT Sbjct: 292 RELGFTAKSPRWAIAYKFPAEQVETVVEDIVIRVGRTGVLTPTAYLTPVFVAGSTVGRAT 351 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I+ +D+R+GD VL+++AG+VIP+VV I+ +R + F P Sbjct: 352 LHNLDNIR-----------AKDVRIGDHVLIQKAGDVIPEVVKILPEKRTGGERIFEMPE 400 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP CQS V+R+ AAHRCT + C A+Q E + HFVSR+A NI+GLG + Sbjct: 401 LCPECQSPVIREEGE------AAHRCTS-ITCPARQREAIIHFVSRNAMNIDGLGPAVIY 453 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + A I+ AD++ L+ + + G S NL +I + L Sbjct: 454 QLLE----AGLIKDAADLYALEYD------ALVPLERLGKKSAENLLKAIEDSKERGLAP 503 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 IF LGIRHVG + + LA+ Y + ++ + L +P VG +AQ++ Sbjct: 504 LIFGLGIRHVGEKAGKILAQKYGTMEDLEKA----------QVEELQEIPDVGPAMAQSV 553 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 +F+Q + L + +H K +V TG+LQ+ RH + + + Sbjct: 554 AQFFQQESTHHFLNKLRQAGVVMSAQHSAK-PQIFAGKSIVVTGSLQRWDRHYVETMIEE 612 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G ++ +S+KT ++ G+ GSKL KA++LG+ +++EE+F LL Sbjct: 613 FGGKAASSVSKKTAFVVAGEKAGSKLAKAKELGIPVLSEEEFAELL 658 >gi|327475235|gb|AEA77212.1| DNA ligase [Exiguobacterium sp. EPVM] Length = 664 Score = 538 bits (1387), Expect = e-150, Method: Composition-based stats. Identities = 241/711 (33%), Positives = 385/711 (54%), Gaps = 52/711 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + + ++ Q+++ + YY +P + D+EYD L I +P+L P+ P Sbjct: 2 EMAERVEAIRQKLNQYGYEYYVLDRPSVPDAEYDRLMNELIEIETDYPEL---RSPDSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + KVTH P LSL +++ E+L +++ RI + S F E K D Sbjct: 59 QRVGGAPLDAFVKVTHDTPMLSLGNVFSKEELVEWVDRIEKDLG----YSPLFVAELKFD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G ++++YE G+FV A RGDG +GED++ +R I +IP L+ ++ EVRGE Y+ K Sbjct: 115 GLAVSLKYEDGRFVRGATRGDGTTGEDITQNLRTIRSIPLRLNEDV--TFEVRGEAYMPK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254 F LNDE +G +ANPRNAA+G LR+L+ +R L FF +GL T ++ A Sbjct: 173 RSFEHLNDERERLGEPLFANPRNAAAGSLRQLDSKIAASRNLAFFAYGLVSTDDLVAS-H 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L+ +R LG V+ A+T + Y + RS LPY+IDG+V KV + Q+Q Sbjct: 232 DESLEYLRHLGIAVSQEYTTAHTAEELWGYIETYVTKRSELPYEIDGIVIKVAGYEEQEQ 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW +++KF ++ T + D+D +GRTG +TP AR PV++ G+ +T ATLH Sbjct: 292 LGFTAKSPRWAVAYKFPAEEVVTTIEDVDFSVGRTGKVTPRARFAPVSVAGSTVTYATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED+I +D+ +GDRV++K+AG+VIP VV +V+ER + FP+ C Sbjct: 352 NEDFI-----------LEKDLHIGDRVVIKKAGDVIPAVVSALVSERTGEETEIVFPTHC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C+S +VR A HRC C AQ LE L HFVSR A NI+GLG++ + Sbjct: 401 PACESELVRLEGE------ADHRCVNP-ECPAQLLEGLIHFVSRPAMNIDGLGEKVITQL 453 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 S+ + AD++ L R + + G+ SVTNL +I++ + SLER + Sbjct: 454 HASD----LVHNVADLYRLDRD------ALLALDRMGETSVTNLLAAIDQSKQNSLERVL 503 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG + A +A+ + + + + L + +G +A++I Sbjct: 504 FALGIRLVGQKAAVLIAERFETMEAVMEA----------SIDELTSIDGIGTKMAESISL 553 Query: 615 FYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 +++ P V L + + + + + K +V TG L ++ R +A + + Sbjct: 554 YFEKPEARDLVRELGEAGVNLTFKGAKRSVDTDAPLAGKTVVLTGKLHEMTRGEAGKKLE 613 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA V+ +S+ TD+++ G+ GSKL KA+ LG+++ +E L L + + Sbjct: 614 LLGASVTGSVSKNTDLLVAGEKAGSKLTKAESLGIEVWDEAALLAFLAEQS 664 >gi|196045221|ref|ZP_03112453.1| DNA ligase, NAD-dependent [Bacillus cereus 03BB108] gi|196023805|gb|EDX62480.1| DNA ligase, NAD-dependent [Bacillus cereus 03BB108] Length = 669 Score = 538 bits (1387), Expect = e-150, Method: Composition-based stats. Identities = 246/715 (34%), Positives = 387/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E +K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIVKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q DD ++ + E Sbjct: 58 DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 ILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ A IR AD+++L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFE----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L + R + Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLAVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|118617527|ref|YP_905859.1| NAD-dependent DNA ligase LigA [Mycobacterium ulcerans Agy99] gi|166216215|sp|A0PPW9|DNLJ_MYCUA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|118569637|gb|ABL04388.1| DNA ligase [NAD dependent] LigA [Mycobacterium ulcerans Agy99] Length = 683 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 217/708 (30%), Positives = 347/708 (49%), Gaps = 43/708 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++ L +++ H YY P+I D+E+D L RR +A+ +P+L P+ P + Sbjct: 3 RQWQELAEQVREHQFRYYVRDAPVITDAEFDELLRRLEALEEQYPEL---RTPDSPTQLV 59 Query: 79 GGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 GG V H LSL+ +N E+L + RI+ +S + E KIDG Sbjct: 60 GGAGFATEFEPVEHLERMLSLDNAFNTEELTAWAGRIHADVG----DSAAYLCELKIDGV 115 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP----RVLSLNIPEIIEVRGEVYI 193 +++ YE G+ A+ RGDG +GEDV+ R I +P +PE++EVRGEV+ Sbjct: 116 ALSLVYEGGRLTRASTRGDGRTGEDVTLNARTIEDVPERLSHSEDHRMPEVLEVRGEVFF 175 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 DF ALN ++ G+ P+ANPRN+A+G LR+ +P R L HGLG T Sbjct: 176 RVADFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHTEGFRPA 235 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 ++ ++ G PV+ + + + R + ++IDG+V KVD+ +LQ Sbjct: 236 TLHQAYLALQAWGLPVSQHTTLVADLAEVQARIDYWGEHRHEVDHEIDGVVVKVDDVALQ 295 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG +R+PRW I++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ + AT Sbjct: 296 RRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVAQAT 355 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN +K + + +GD V++++AG+VIP+V+ +V+ R + F P+ Sbjct: 356 LHNASEVKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEREFVMPT 404 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + + + + A RC +C Q ER+ H SR+A +IE LG + Sbjct: 405 TCPECGTPLAPE-----KEGDADIRCPNTRSCPGQLRERVFHVSSRNALDIEMLGYEAGA 459 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 A I D+F L + T G + L +++K + L R Sbjct: 460 ALLS----ARVIGDEGDLFGLTEEELLRTDLFRTKAGDLSANGRRLLANLDKAKAAPLWR 515 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 + +L IRHVG AR+LA + S L V VG IA A+ Sbjct: 516 VLVALSIRHVGPTAARALATEFGSIDAIVAATT----------EQLAAVEGVGPTIASAV 565 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 E++ + VE + +V + +V TG+L R +A+E + Sbjct: 566 SEWFTVDWHREIVERWRAAGVRMADERDDSVPRTLAGVTVVVTGSLPGFSRDEAKEAIVT 625 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G + +S+KT ++ GD PGSK +KA +LGV I++E+ F LL+Q Sbjct: 626 RGGKAAGSVSKKTSYVVAGDAPGSKYDKAVELGVPILDEDGFRKLLEQ 673 >gi|259047691|ref|ZP_05738092.1| DNA ligase, NAD-dependent [Granulicatella adiacens ATCC 49175] gi|259035882|gb|EEW37137.1| DNA ligase, NAD-dependent [Granulicatella adiacens ATCC 49175] Length = 668 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 225/706 (31%), Positives = 373/706 (52%), Gaps = 53/706 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++ + L+++++ YY KP D+EYD A+ P+ + + P Sbjct: 7 IQQRIEQLKEQLNRWSHEYYVEDKPTATDAEYDKAYHELLALEKEHPEFVTA---DSPTQ 63 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GGE+ KVTH+ P LSL ++ EDL +F R+ + + +I + E KIDG Sbjct: 64 RVGGEVLEQFQKVTHTNPMLSLSNAFSKEDLEEFDARLRKLTNR----AIEYVCELKIDG 119 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I + Y+ G+ A RGDG +GEDV+ +R I ++P L IEVRGE Y+ K Sbjct: 120 LSIALTYQNGQLQLGATRGDGTTGEDVTGNVRTIKSVPLSLKEPWN--IEVRGECYMPKK 177 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255 F+ALN G + +ANPRNAA+G LR+L+P R L+ F++ E+ Q Sbjct: 178 SFVALNKSREEEGLEVFANPRNAAAGSLRQLDPKIAAKRNLSVFLYSSPSVEELNVSTQE 237 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E+L+KM +GF N + T + +Y + + R LPY+IDG+V KV++F+ Q+++ Sbjct: 238 ELLRKMAEIGFVTNPERLKCQTIDEVWNYIETIGAKRQELPYEIDGMVIKVNDFATQEEI 297 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++PRW I++KF ++A T + D++ +GRTG++TP A ++PV + G + A+LHN Sbjct: 298 GYTVKAPRWAIAYKFPAEEAQTVVRDVEWTVGRTGVVTPTAVMDPVQLAGTTVRRASLHN 357 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D +K RDIR+ D V++ +AG++IP+V +I+ +R +QP+ FP+ CP Sbjct: 358 IDLMK-----------ERDIRLEDTVVIHKAGDIIPEVTRVILEKRPATSQPYEFPTTCP 406 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C ++ + A RC C AQ E + HFVSR+A N+ G+G + FF Sbjct: 407 VCHEKLEHLEDE------VAIRCLNPK-CPAQLTEGMSHFVSRNAMNMSGIGPSIIKQFF 459 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + + AD++ L Q + S N+ ++I + SLER + Sbjct: 460 EE----GLVLDVADLYKLTLDQL------LELDKIQQKSAENILEAIENSKANSLERLLT 509 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIRHVG + A+ LA+++ + + + L+ + +GDIIA ++ + Sbjct: 510 GLGIRHVGTKAAKELAQHFENMKALQEA----------SIEQLLEIDGLGDIIAYSVKTY 559 Query: 616 YQNPRNICAVEALLKEVSPS-----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ P ++ L + + K +V TGTL+++ R A+E + Sbjct: 560 FEQPSVQELIQELQDRGVNMSYLGKTKADSEASGHILSGKTVVLTGTLEQLTRQDAKEKL 619 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 LGA V+ +S+KTD++I G + GSKL+KA LG+++ +E+QFL Sbjct: 620 ESLGAKVTGSVSKKTDVVIAGYSAGSKLDKANSLGIEVWSEQQFLD 665 >gi|52079149|ref|YP_077940.1| NAD-dependent DNA ligase LigA [Bacillus licheniformis ATCC 14580] gi|52784516|ref|YP_090345.1| NAD-dependent DNA ligase LigA [Bacillus licheniformis ATCC 14580] gi|319647076|ref|ZP_08001302.1| DNA ligase [Bacillus sp. BT1B_CT2] gi|81386291|sp|Q65MR2|DNLJ_BACLD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|52002360|gb|AAU22302.1| DNA ligase [Bacillus licheniformis ATCC 14580] gi|52347018|gb|AAU39652.1| LigA [Bacillus licheniformis ATCC 14580] gi|317390900|gb|EFV71701.1| DNA ligase [Bacillus sp. BT1B_CT2] Length = 667 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 244/715 (34%), Positives = 390/715 (54%), Gaps = 54/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E A++ + L I+ ++ Y+ P + DSEYD L + A+ PDL P Sbjct: 1 MEKEAAKRRVEQLHALINKYNYEYHTLDDPSVPDSEYDKLMKELIALEEEHPDLK---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + + KV H P LSL +N EDLR F R+ + + + +E Sbjct: 58 DSPSQRVGGAVLDAFQKVQHKTPMLSLGNAFNEEDLRDFDRRVRQAVG-----DVEYNVE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG +GED++ ++ I IP + IEVRGE Sbjct: 113 FKIDGLAVSLRYENGVFVRGATRGDGTTGEDITENLKTIRNIPLRM--KRDLSIEVRGEA 170 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 ++ K F LN I +P+ANPRNAA+G LR+L+P R L+ FV+ + + E+ Sbjct: 171 FMPKRSFELLNKARIERDEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 230 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + Q + L + LGF N+ ++ +T ++ E+K+ R+ LPY+IDG+V KVD Sbjct: 231 VETQSQGLDFLDELGFKTNHERKKCSTIEEVIEIVEELKTKRADLPYEIDGIVIKVDSLD 290 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG A+SPRW I++KF ++ T LLDI++ +GRTG +TP A LEPV + G + Sbjct: 291 QQEELGFTAKSPRWAIAYKFPAEEVVTTLLDIELSVGRTGAVTPTAILEPVKVAGTTVQR 350 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED IK +DIR+ D+V+VK+AG++IP+VV+++V +R + F+ Sbjct: 351 ASLHNEDLIK-----------EKDIRLLDKVVVKKAGDIIPEVVNVLVEQRTGKEKEFNM 399 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 400 PKECPECGSELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 452 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ + + AD++ L R Q + + G+ S NL +SI K + SL Sbjct: 453 ITQLFRED----LVHNVADLYKLTREQLIN------LERMGEKSTDNLLNSIEKSKKNSL 502 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIR +GA+ A++LA ++ + + LI V +GD +A Sbjct: 503 ERLLFGLGIRFIGAKAAKTLAMHFETLDKLKKATK----------EELIEVDEIGDKMAD 552 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 A+V +++ + ++ L + ++ + + S K +V TG L ++ R+ Sbjct: 553 ALVTYFEKEEILKLLDELEELGVNTVYKGPKKAAAEASDSYFAGKTIVLTGKLSEMSRND 612 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ + LG ++ +S+KTD++I G+ GSKL KA+ L +++ +E + + L++ Sbjct: 613 AKAEIEALGGKITGSVSKKTDLVIAGEAAGSKLAKAEDLNIEVWDEARLISELKK 667 >gi|229131294|ref|ZP_04260196.1| DNA ligase [Bacillus cereus BDRD-ST196] gi|228652180|gb|EEL08115.1| DNA ligase [Bacillus cereus BDRD-ST196] Length = 669 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 247/715 (34%), Positives = 389/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R++ Q DD ++ + E Sbjct: 58 DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVH---QGIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 IQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R D + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGDEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD+++L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LELERFGEKSATNLVQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKTINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLLVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|229148695|ref|ZP_04276945.1| DNA ligase [Bacillus cereus m1550] gi|228634703|gb|EEK91282.1| DNA ligase [Bacillus cereus m1550] Length = 669 Score = 538 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 247/715 (34%), Positives = 387/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R+ Q D ++ + E Sbjct: 58 DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD++ L + Q + FG+ S TNL +I K + SL Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIEKSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMKYKGIKIADLQNVESYFVGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|149173204|ref|ZP_01851835.1| DNA ligase [Planctomyces maris DSM 8797] gi|148848010|gb|EDL62342.1| DNA ligase [Planctomyces maris DSM 8797] Length = 671 Score = 538 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 217/712 (30%), Positives = 356/712 (50%), Gaps = 47/712 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 R E+ L +++ +H+ YY +KP I D EYD L +R + + P+ + P P Sbjct: 2 SVRTEIEELRKQLEHHNRLYYLDAKPEITDREYDRLMKRLEQLETDHPEY---DSPESPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+GG V H +P LS++ I+ +E L +F RI + + + + T E KID Sbjct: 59 KKVGGAPIEGFQTVAHRLPMLSIDNIFELEGLTEFEARICKLLGQ---DQVELTAEYKID 115 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYIS 194 G +++ YE+G+ + RGDG G+D++ +R I +P + N PE++EVRGE YIS Sbjct: 116 GVAVSLIYEEGRLIQGLTRGDGQQGDDITHNVRTIIGVPLRLETENPPELLEVRGEAYIS 175 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 +DF LN EM G++P+AN RN +G L+ L+P R + FF HG+G + + + Sbjct: 176 NSDFQVLNVEMQEQGKEPFANSRNTTAGGLKLLDPKLCAKRKIRFFAHGIGAMAGVDYQT 235 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E L ++ +G P GV+ + + M L +++DG+V KV+ F ++ Sbjct: 236 HIEYLAAIQEMGIPATPGVKAFPDLKTTMEHVQTMMDDLHALDFEVDGIVLKVNRFDQRE 295 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG ++SPRW++++K+ +A TR I Q+G+TG +TPVA LEPV I G ++ A+L Sbjct: 296 ELGNTSKSPRWVVAYKWERYEAVTRAESIVFQVGKTGTVTPVANLEPVPIAGTTVSRASL 355 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D ++ L I++GD V+V++AG++IP VV + + R Q FP+ Sbjct: 356 HNRDEMERL-----------GIQIGDWVVVEKAGKIIPHVVRVEEHRRDGSQQELEFPTH 404 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C + +++D + C A E L+++ SR A +I + Sbjct: 405 CPECDTLLIQDEGGVYIR-------CPNPNCPAMLRETLRYYASRQAMDI----EGMGIK 453 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + ++ ADI+ L + + G+ S+ NL I + L R Sbjct: 454 MIEQLLGQGLLKGLADIYRLHNY----YGDLVALERQGEKSIENLLAGIENSKTQPLWRL 509 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + L IRHVG+ AR L K + + AQ L V +G +IA+++ Sbjct: 510 LTGLNIRHVGSSNARILEKQFGTIDEIAQ----------QSVEELAAVDEIGPVIAESVY 559 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKAQEYV 670 F+ + ++ L EK + ++ K LV TGTL + R +A+E + Sbjct: 560 TFFHSDFGTKLIDDLKSAGLNMGSPVEKTTTEAAGILDGKTLVVTGTLTQFTRDEAKELI 619 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + G S +S KTD ++ G+ GSKL KA++L V ++ E +FL LL + Sbjct: 620 RKHGGKASGSVSSKTDYLVAGEKAGSKLSKAEELNVPVLTEIEFLELLGESG 671 >gi|148557620|ref|YP_001265202.1| DNA ligase, NAD-dependent [Sphingomonas wittichii RW1] gi|190359290|sp|A5VFJ8|DNLJ_SPHWW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148502810|gb|ABQ71064.1| DNA ligase, NAD-dependent [Sphingomonas wittichii RW1] Length = 708 Score = 538 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 286/737 (38%), Positives = 414/737 (56%), Gaps = 62/737 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + QA + L+ L EI+ H+ Y+ P I D++YDAL R A+ +P L R+ + Sbjct: 3 TESQAAERLAFLAAEIARHNALYHGEDAPEISDADYDALMRENAALEAEYPHLVRA---D 59 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +G + L KV H+ P LSL+ + ED+ F+ R+ R+ + + T EP Sbjct: 60 SPSKLVGAAPSGHLAKVAHAQPMLSLDNAFADEDVVDFVGRVRRYLSLGAEEPVALTAEP 119 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-----NIPEIIEV 187 KIDG ++RYEKG V AA RGDG +GEDV+A +R I IP L + P++ E+ Sbjct: 120 KIDGLSCSLRYEKGVLVLAATRGDGTTGEDVTANVRTIDDIPERLRGGDLLSSPPDVFEI 179 Query: 188 RGEVYISKNDFLALNDEMIAVGRKP-----YANPRNAASGILRRLNP-TDITRYLNFFVH 241 RGEVY++K DF ALN ++A P +ANPRNAA+G LR+ +P +R L F H Sbjct: 180 RGEVYMAKADFAALNARLLAEAEDPAKARQFANPRNAAAGSLRQKDPGVTASRPLRFLAH 239 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G G+ S + A Q ++ + G PV++ + + +S+Y +++ R+ LP+DIDG Sbjct: 240 GWGEVSALPADTQKGVMDAIAAWGLPVSDDFVRVDGAAQALSHYRAIEAKRADLPFDIDG 299 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYKVD QK+LG AR+PRW I+HKF ++A T L DIDIQ+GRTG LTPVARLEPV Sbjct: 300 VVYKVDRLDWQKRLGFVARAPRWAIAHKFPAEKAQTLLKDIDIQVGRTGKLTPVARLEPV 359 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 +GG ++TNATLHN D I L D+ GDRV+V+RAG+VIP++ + R Sbjct: 360 TVGGVVVTNATLHNADEIGRL-----------DVHPGDRVVVQRAGDVIPQI--VENLSR 406 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 P+ FP CP C S R+ +RCTGGL C AQ++ERL+HFVSR A Sbjct: 407 DETRDPWPFPQTCPECGSAAEREPGE------VDYRCTGGLICPAQRVERLRHFVSRHAL 460 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +IEGLG ++ FF+ ++ PADIF L + + + +VS NL + Sbjct: 461 DIEGLGLTHIESFFRD----GLVQSPADIFRLTKDILLTR------ERWAEVSAGNLIAA 510 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL----- 596 I+ +R+ L+RF+F+LGIRHVG AR LA+ Y S++ I+ I + Sbjct: 511 IDAKRHPPLDRFLFALGIRHVGEVTARDLARRYRSWEGLKAMIDRTIEARDAAVQAIGET 570 Query: 597 ----------SLIRV---PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 L + P VG +A A+V+F+ P N AV LL ++ P+ HE Sbjct: 571 DEKFAARTAKELAAIVETPGVGPEVALALVDFFAEPHNADAVADLLSQLQPADVIHETRA 630 Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 SE+ K +VFTGTL+ + R +A+ LGA V+ +S KTD+++ G GSKL+KA Sbjct: 631 -SEVSGKTVVFTGTLETMSRDEAKAQAEALGAKVAGSVSAKTDLVVAGPGAGSKLKKASD 689 Query: 704 LGVKIMNEEQFLFLLQQ 720 LG+ + +E + ++ Sbjct: 690 LGIAVTDEAGWAKIVAD 706 >gi|325838923|ref|ZP_08166729.1| DNA ligase (NAD+) [Turicibacter sp. HGF1] gi|325490664|gb|EGC92975.1| DNA ligase (NAD+) [Turicibacter sp. HGF1] Length = 662 Score = 538 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 247/708 (34%), Positives = 368/708 (51%), Gaps = 53/708 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L + ++ ++ YY KP + D EYD L + + P+L P + Sbjct: 3 KLRIEELTKLLTQYNHEYYVLDKPSVSDREYDRLMQELMELEEKHPELK---SNTSPTVR 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ K+ H P LSL +N DLR F TR+ + + E KIDG Sbjct: 60 VGGKVLEGFNKIEHEKPMLSLSNAFNEGDLRDFDTRVKKV-----SPKATYVCELKIDGL 114 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +T+ Y G FV A RGDG GED+S ++ I TIP ++ N P +EVRGEVY+SK Sbjct: 115 AVTLHYNNGAFVKGATRGDGVIGEDISENLKTIKTIPLHINNNQP--LEVRGEVYMSKAT 172 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 LN+E A G + +ANPRNAA+G LR+L+ R L F + + +++ E Sbjct: 173 LEKLNEERAAKGEELFANPRNAAAGSLRQLDSRIAAKRNLAMFCYAVPSAADLGCTTHEE 232 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 LQK+ LGF VN + ++ Y N + R LPY+IDG+V KV++ Q +LG Sbjct: 233 SLQKISELGFNVNPNRQVCENIDEVLEYINRWTNARFDLPYEIDGIVIKVNQLQEQDKLG 292 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T L DI +GRTG++TP A LEPV + G ++ ATLHNE Sbjct: 293 NTVKSPRWAIAYKFPAEEVETILTDIIFTVGRTGMVTPNAVLEPVRVAGTRVSRATLHNE 352 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DY+ RDIR+ DRV++++AGE+IP+VV +++ R+ D PF S CP Sbjct: 353 DYVTS-----------RDIRINDRVIIRKAGEIIPEVVKPVIDARNGDEIPFEMISTCPR 401 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR+ + C A+ +E L HFVSRDA NI+GLG + ++ F+ Sbjct: 402 CSSELVREAGEAD-------YYCLNIDCPARIVESLSHFVSRDAMNIDGLGIKVVEQLFE 454 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + I ADI+ L + Q + GD TNL ++I + SLE+ +F Sbjct: 455 HK----LIENVADIYRLTKEQL------LPLERMGDKKATNLLNAIEASKENSLEKLLFG 504 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVG++ A+ LA + + + + V VGD+IA +IV ++ Sbjct: 505 LGIRHVGSKTAKVLATQFENMDSLMDA----------KFDDFKVVAEVGDVIANSIVHYF 554 Query: 617 QNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 N+ + L + + + N K +V TGTL+ + R +A + Sbjct: 555 SQTANVELINQLKELGLNMSYKGARLADANTEHVFFGKTVVLTGTLETLSRKEAGIKLES 614 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA VS +S TD +I G GSKL KAQQLGV +++E FL ++ + Sbjct: 615 LGAKVSGSISSNTDYLIAGAKSGSKLTKAQQLGVTVLDEATFLSMMNE 662 >gi|259416760|ref|ZP_05740680.1| DNA ligase, NAD-dependent [Silicibacter sp. TrichCH4B] gi|259348199|gb|EEW59976.1| DNA ligase, NAD-dependent [Silicibacter sp. TrichCH4B] Length = 739 Score = 538 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 296/753 (39%), Positives = 430/753 (57%), Gaps = 59/753 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++ ARKE +L+ +I D Y+Q P + D+EYD LKRR A+A AFP+LA Sbjct: 1 MNVTDARKEFEALQTKIEAADLDYHQKDAPTLSDAEYDRLKRRYLALAEAFPELAEEGTR 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + +G K+ H++ +SL + +D+ F + R+ D + FT E Sbjct: 61 ---VESVGAPAASGFGKIAHAVRMMSLGNAFEDQDVEDFAAGLRRYLGLSSDAPLAFTAE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG +++RYE G V AA RGDG GE+V+ R I IP+ ++ P ++EVRGEV Sbjct: 118 PKIDGLSLSLRYENGTLVQAATRGDGAVGENVTENARTIEDIPQQITGA-PAVLEVRGEV 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+S DF ALN G K +ANPRNAA+G LR+L+ R L FF + G+ SE Sbjct: 177 YMSHADFEALNARHAETGGKIFANPRNAAAGSLRQLDAEITRARPLRFFAYSWGELSEPL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A+ Q + +++ + LGF N R T ++++Y+ ++ R+ L YDIDG+VYKV++ + Sbjct: 237 AETQIDAIERFKSLGFQTNPLTRCCQTIAELLTHYHSIEEQRADLGYDIDGVVYKVNDLA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL+PV +GG +++N Sbjct: 297 LQERLGFRSTTPRWAIAHKFPAELAWTRLDGIDIQVGRTGALSPVARLQPVTVGGVVVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNEDYI GLD+ G +R G+DIRVGD V + RAG+VIPKV D+ +N R A+ ++F Sbjct: 357 ATLHNEDYIAGLDSKGATIRDGKDIRVGDWVQIYRAGDVIPKVADVDLNRRPDGAEVYAF 416 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S VR+ A RC+GGL C AQ +E+LKHFVSR AF+IEGLG +Q Sbjct: 417 PTHCPRCNSPAVREEG------DAVRRCSGGLICPAQAVEKLKHFVSRAAFDIEGLGAKQ 470 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F I+ PADIF L+ R + +++N G+GD S T L+ +I+ +R I Sbjct: 471 VEQFHSD----GWIKEPADIFELKERYGSGMQQLKNREGWGDKSATALFAAIDDKRRIEF 526 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN------------------------- 585 R IF LGIRHVG A+ LA ++ ++ A+ + Sbjct: 527 ARLIFGLGIRHVGEVAAKDLALHFRTWAVLAEAADLARPAALAHRAADEAELLERQVAQA 586 Query: 586 ------------------NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 + W LI V +G +A ++ + + NP A + Sbjct: 587 EERRARISEVRKAAIAACEVAPDAQAAWDDLISVDGLGPTVALSLSDAFANPEERAAFDR 646 Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 L+ + I S + K +VFTGTL+K+ R +A+ LGA VS +S+KTDI Sbjct: 647 LIAHLEV-IEPDAPTEDSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVSGSVSKKTDI 705 Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ G GSK KA +LGV+ M+E+Q+L L+ Q Sbjct: 706 LVAGPGAGSKATKAAELGVRTMDEDQWLDLIGQ 738 >gi|78188256|ref|YP_378594.1| NAD-dependent DNA ligase [Chlorobium chlorochromatii CaD3] gi|123743484|sp|Q3ATX4|DNLJ_CHLCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|78170455|gb|ABB27551.1| NAD-dependent DNA ligase [Chlorobium chlorochromatii CaD3] Length = 667 Score = 538 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 228/709 (32%), Positives = 367/709 (51%), Gaps = 46/709 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I A + ++ L QEI H+ Y+ +KP + D E+D L A+ FPDL P Sbjct: 1 MTIIDASERIAQLRQEIERHNYLYFNEAKPELSDYEFDKLLEELMALEREFPDLL---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + VTH P LSL ++ ++ +F R+ + ++ + E Sbjct: 58 DSPSQRVGGTITKEFPVVTHREPMLSLANTYSAGEVAEFYNRVAKLLAAENVHKQEMVAE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG I++ Y G V A RGDG G+D++ IR I +IP L + +EVRGE+ Sbjct: 118 LKFDGVAISLLYRDGVLVRGATRGDGVQGDDITPNIRTIASIPLRLHQPLAGEVEVRGEI 177 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 ++ K DF LND + +ANPRNA +G L+ + + R +NF + L K + Sbjct: 178 FMRKEDFEQLNDNRPE--EERFANPRNATAGTLKLQDSAEVARRRMNFVAYYL-KGLKDE 234 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L K+ LGF R+ T I ++ NE + R LPY+ DG+V K++ Sbjct: 235 TLDHVSRLHKLEALGFTTGGHYRRCKTIEEINTFINEWEEKRWKLPYETDGVVLKLNNVQ 294 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 L +QLG A+SPRW I++K+ +QA T+L ++ Q+GR G +TPVA L PV + G+ ++ Sbjct: 295 LWEQLGATAKSPRWAIAYKYPAQQARTQLCNVVFQVGRIGTITPVAELTPVLLAGSTVSR 354 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 +TLHN D I+ L + + D V+++++GEVIPKVV + +ER DA + Sbjct: 355 STLHNFDEIERLS-----------VMILDYVMIEKSGEVIPKVVRTLPDERPADAHAIAI 403 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C + +++ N + C C AQ RL HF SR+A +I+GLG Sbjct: 404 PTHCPECDTPLIKPENE------VSWYCPNEEHCPAQIRGRLLHFASRNAMDIKGLGDAL 457 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + D++ LQ Q +E + G S NL ++++ R S Sbjct: 458 VEQLVAW----GLVHDVGDLYLLQEPQ------LERMERMGKKSAQNLIRALDESRTRSY 507 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +R +++LGIRHVG AR LA + + Q L VP +G +AQ Sbjct: 508 DRLLYALGIRHVGRATARELAHAFPTLDALMQANE----------ERLAEVPDIGTTVAQ 557 Query: 611 AIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 +IV+F+ P + V+ L + + + V+ E L+FTGTL++ R +A E Sbjct: 558 SIVDFFAKPSSRQLVDKLREARLQLAASASKIEQVNRNFEGMSLLFTGTLERYTRQQAAE 617 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V + G V +S+KT +++ G + GSKL+KA +LGV++++E++F+ + Sbjct: 618 LVVERGGRVVESISKKTSLLVAGRDGGSKLDKAHKLGVRVISEDEFMGM 666 >gi|257875591|ref|ZP_05655244.1| DNA ligase [Enterococcus casseliflavus EC20] gi|257809757|gb|EEV38577.1| DNA ligase [Enterococcus casseliflavus EC20] Length = 676 Score = 538 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 230/711 (32%), Positives = 371/711 (52%), Gaps = 53/711 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 ++ + L +++ + YY +P + D YD L I +P L + P Sbjct: 6 KEIQSRAEELRTQLNQYAYEYYVKDQPSVEDYLYDQLYAELVEIETNYPQLV---TEDSP 62 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG + KVTH IP SL +++ E + F R+ + K ++ + E KI Sbjct: 63 TQRVGGIILPGFEKVTHDIPLYSLNDVFDKEGIVAFDARVQKALGK----AVDYVCELKI 118 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I+++YE+G+FV A RGDG GE+++ ++ + +IP L I +EVRGE Y+ Sbjct: 119 DGLSISLKYEEGRFVRGATRGDGTVGENITENLKTVKSIPLKLKEPIS--LEVRGECYMP 176 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG 253 K+ FL LN + G + +ANPRNAA+G LR+L+ R L+ F++ L I A Sbjct: 177 KSSFLKLNQQREEEGAEVFANPRNAAAGSLRQLDTRIAAQRNLSTFLYTLADFGPIEAND 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q+ L ++ LGF N+ R +T + +Y E RS LPY+IDG+V KV+ F Q Sbjct: 237 QFSALNELDQLGFRTNHERRVCHTIDEVWAYIEEFHDKRSELPYEIDGVVIKVNNFKDQD 296 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG ++PRW ++KF ++A T + I+ +GRTG++TP A + PV + G ++ A+L Sbjct: 297 ALGFTVKAPRWAAAYKFPPEEAETVIETIEWTVGRTGVVTPTAVMTPVRVAGTTVSRASL 356 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D+IK +DIR+GD V++ +AG++IP+V ++ +R +QPF P+ Sbjct: 357 HNVDFIKM-----------KDIRIGDSVIIYKAGDIIPEVAKVLEEKRTEASQPFESPTH 405 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S ++ A RC C AQ E L HFVSR+A NI+ LG + L+ Sbjct: 406 CPECGSELIHLDEE------VALRCINPK-CPAQIKEGLSHFVSRNAMNIDSLGPRVLEQ 458 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F ++ AD++ L Q + + + S NL +I++ + S+ER Sbjct: 459 MFDKS----LVKDVADLYFLTEEQLLT------LDKIKEKSANNLLRAIHQSKGNSVERL 508 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF LGIRHVGA+ AR LA+++ + ++ +I + +G IA+++V Sbjct: 509 IFGLGIRHVGAKAARILAEHFGDLRALSKAKE----------EEIISLEAIGATIAESVV 558 Query: 614 EFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ N ++ L + ++V S + K +V TG L R +A+E Sbjct: 559 TYFDNQEVHDLLDELERAGVNFAYLGLRNEQLEDVESPFKEKTVVLTGKLSHFTREEAKE 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LG V+ +S+KTDI++ G+ GSKL KAQ LGV + +E Q + ++ Sbjct: 619 RIENLGGKVTGSVSKKTDIVVAGEEAGSKLTKAQSLGVTVWDEAQMVAAIE 669 >gi|313898151|ref|ZP_07831690.1| DNA ligase (NAD+) [Clostridium sp. HGF2] gi|312957179|gb|EFR38808.1| DNA ligase (NAD+) [Clostridium sp. HGF2] Length = 665 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 238/700 (34%), Positives = 361/700 (51%), Gaps = 47/700 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + L + YY +P D EYD + A+ FP DPN + Sbjct: 3 QQRILELRSILDRLAYEYYVLDQPSKSDQEYDRYYQELVALEDEFPQY---RDPNSITQR 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + + KV H LSL +N+EDL F R+ + + +E KIDG Sbjct: 60 VGGVVLDAFTKVEHKRTMLSLGNAFNLEDLHAFDERVREVV-----PNARYVVELKIDGL 114 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +++ Y G+FV A RGDG GEDV+ ++ IP+IP + + +EVRGEVY+ Sbjct: 115 AMSLIYRDGRFVQALTRGDGVVGEDVTHNVKTIPSIPMH--IPLQGEVEVRGEVYMPNAS 172 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+E G + +ANPRNAA+G +R+L+ + R L+ F + E E Sbjct: 173 FQMLNEEREKNGEELFANPRNAAAGSIRQLDSSVAAKRKLDAFWYYFVNAQEYDIHSHEE 232 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 LQKM + VN + + + E+ R+ LPY IDG+V KVD+ Q +LG Sbjct: 233 ALQKMSEMHLRVNPLRKVCERIDEVWQFIEEITEQRNDLPYAIDGMVIKVDDLDAQNRLG 292 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + PRW I++KF ++ T+LLDI + +GRTG +TP A LEPV + G ++ A LHNE Sbjct: 293 STVKVPRWAIAYKFPAEEVITKLLDIVVTVGRTGRITPNAVLEPVRVAGTTVSAAQLHNE 352 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D IK +DIR+ D V+V++AG++IP+VV ++ R+ + FP+ CPI Sbjct: 353 DMIK-----------EKDIRIHDDVVVRKAGDIIPEVVRPLLERRNDTQAVYHFPTHCPI 401 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR AAH C C A+ +E + HF SRDA +I+ LG ++++FF K Sbjct: 402 CGSELVRFPEE------AAHYCIN-QDCPARVVESMIHFASRDAMDIDTLGDKKVEFFHK 454 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + DI+ L+ +Q ++ ++ GF + SV L D+I + LE I+ Sbjct: 455 Q----GFLNTIEDIYCLKEHRQ----ELIDLEGFKEKSVDKLLDAIEDSKQNPLEDLIYG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG + A+ LAK++LS L+ + +G I A++I F+ Sbjct: 507 LGIRQVGKKAAKVLAKHFLSMDALMAANE----------EELVAIKDIGQITAESITAFF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 P+N+ + L E+ S K +V TGTL ++ R+ A+ + LGA Sbjct: 557 HEPKNMELIAHLKGYGLRMDTEAEQIQESSFSGKTIVLTGTLTQMTRNDAKALLESLGAN 616 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 VS +S+KTD++I G+ GSKL KA LGV M+E+ F+ Sbjct: 617 VSGSVSKKTDLVIYGEAAGSKLTKANSLGVMTMDEDTFMK 656 >gi|320102706|ref|YP_004178297.1| NAD-dependent DNA ligase [Isosphaera pallida ATCC 43644] gi|319749988|gb|ADV61748.1| DNA ligase, NAD-dependent [Isosphaera pallida ATCC 43644] Length = 896 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 225/711 (31%), Positives = 374/711 (52%), Gaps = 47/711 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + + R + L +EI +H+ YY + P+I D+EYD L + +A+ PDL P+ Sbjct: 10 TDDPIRDRIERLRREIEHHNRLYYVEAAPVISDAEYDRLVKDLEALEAERPDLV---TPD 66 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GG V H++P LS++ ++ +LR++ TR+ + + I + +E Sbjct: 67 SPTQRVGGAPLGEFITVEHTVPMLSIDNAYSEAELREWATRVRKGLTSTE--PIHYVVEL 124 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI---PEIIEVRG 189 KIDG I +RYE G+ V A RGDG G+D++A R I IP VL PE++EVRG Sbjct: 125 KIDGVAIGLRYENGRLVRAVTRGDGERGDDITANARTIHDIPLVLDERRTPAPEVLEVRG 184 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSE 248 EV++++++ LN G PYAN RN +G L++L+P R L F HGLG+T Sbjct: 185 EVFMTESELARLNQLRREAGEPPYANSRNLTTGTLKQLDPRQVAKRRLRFTTHGLGETRG 244 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + + +L+++R G P+ + + + + K R++L + DG+V KVD+ Sbjct: 245 LELRSYWAILERLRDWGLPIGPHHARYDDIEAVWRHIQTWKIQRASLDFRTDGVVVKVDD 304 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +++LG R++SPRW ++ K+ +QA T++ + IQ+G+TG LTPVA LEPV + G ++ Sbjct: 305 LGQRERLGTRSKSPRWALAFKYDAEQAITKVRGVTIQVGKTGKLTPVAELEPVLLAGTIV 364 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A+LHN + I +D+R+GD V+V++AGE+IP+VV + +R QPF Sbjct: 365 KRASLHNPEEIAR-----------KDVRIGDTVVVEKAGEIIPQVVRVRTEDRDGTEQPF 413 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CP ++ VV+ + L C Q E L F RDA +I+GLG+ Sbjct: 414 VFPTRCPCDRADVVKPPGEVDVRCP-----IPALQCHRQFKEWLAWFAHRDAMDIDGLGE 468 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + +D + ++ PAD++ L + + G S NL +I ++ Sbjct: 469 KLIDQLVER----GLVKTPADLYRL------DVPTLAALDRMGKKSAENLVKAIAASKSR 518 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SL+R + L IRHVG A +LA+ + + + L VP +G+I+ Sbjct: 519 SLDRLLVGLTIRHVGVGSAETLARKFGTLEALRAAT----------IDELKAVPDIGEIV 568 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKA 666 A+++ ++ ++P NI ++ LL + K +V TGTL ++R A Sbjct: 569 AESVFQYLRDPANIAMIDDLLSVGVSPTAPPVIVARAGLPLAGKTVVLTGTLPTLKRSAA 628 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 ++ + LG VS +S+ T +++ G + GSKL A +LGV +++E L L Sbjct: 629 EDLIKSLGGKVSGSVSKTTSLVVAGADAGSKLVNALKLGVTVIDEATLLAL 679 >gi|262203140|ref|YP_003274348.1| DNA ligase, NAD-dependent [Gordonia bronchialis DSM 43247] gi|262086487|gb|ACY22455.1| DNA ligase, NAD-dependent [Gordonia bronchialis DSM 43247] Length = 691 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 224/710 (31%), Positives = 355/710 (50%), Gaps = 42/710 (5%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 R++ S+L EI H YY P+I D E+DAL RR + A P+LA P+ P Sbjct: 12 ADLREQWSTLADEIREHQFRYYVKDSPVITDGEFDALLRRLQDLEDAHPELAA---PDSP 68 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +GG + + V H +SL+ +++ +++R ++ R+ S+ F E KI Sbjct: 69 TKLVGGGFSTAFTPVDHLERMMSLDNVFDYDEMRTWVERV----NADAGTSVEFLCELKI 124 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGE 190 DG + + YEKG V RGDG +GEDV+ R I +P+ L+ IP+++EVRGE Sbjct: 125 DGVALALVYEKGVLVRGVTRGDGRTGEDVTLNARTIDDVPQRLTASDEYPIPDVLEVRGE 184 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V+ DF ALN ++A G+ P+ANPRN+A+G LR+ NP R L HG+G T Sbjct: 185 VFFRVEDFEALNASLVADGKAPFANPRNSAAGSLRQKNPQITARRRLRMICHGIGHTEGW 244 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 ++ + G PV+ + I+ R + ++IDG+V K D+ Sbjct: 245 RPASLHDAYLALGAWGLPVSTHTTKVPGADEILEKIGYWGEHRHDVEHEIDGIVVKADDV 304 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 S+Q++LG +R+PRW I++K+ ++A+T LLDI + +GRTG +TP A L PV + G+ ++ Sbjct: 305 SVQRRLGATSRAPRWAIAYKYPPEEATTELLDIQVGVGRTGRVTPFAVLAPVLVAGSTVS 364 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHNE +K + + +GD V +++AG+VIP+V+ +V+ R + F Sbjct: 365 RATLHNESEVKR-----------KGVLIGDTVTIRKAGDVIPEVLGPVVDLRDGTERAFV 413 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C + + + RC C AQ ERL H R +F+IE LG + Sbjct: 414 MPDRCPECGAPLRPE-----KDSDVDIRCPNQETCPAQLRERLFHLAGRGSFDIEALGYE 468 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ I D+F+L T G + L ++ + + Sbjct: 469 AATALLNAK----VITNEGDLFSLTADDLARTDLFTTKAGALSANGKRLLANLENAKQVP 524 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R + L IRHVG AR+LA + S D L V +G +A Sbjct: 525 LWRVLVGLSIRHVGPTAARALATEFGSLNAIEDA----------DVEQLAGVEGLGMTLA 574 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 Q+I +++ + VE + ++ +E K +V TG+L+ R A+E Sbjct: 575 QSIHDWFAVDWHREIVEKWRAAGVSMEDERDDSIVRTLEGKTIVVTGSLEDFSRDGAKEA 634 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + Q G S +S+KTD +++G++PGSK KA+QLGV +++E+ F LL+ Sbjct: 635 ILQRGGKASGSVSKKTDYVVIGESPGSKAAKAEQLGVPVLDEDAFKRLLE 684 >gi|296171259|ref|ZP_06852663.1| DNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894227|gb|EFG73984.1| DNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 693 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 217/725 (29%), Positives = 347/725 (47%), Gaps = 47/725 (6%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + P+ + R+ L E+ H YY PI+ D+E+D + A+ Sbjct: 1 MSSAEAEPVSP----EVRRRWQELADEVREHQFRYYIKDAPIVSDAEFDTMFNDLLALED 56 Query: 61 AFPDLARSEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119 +P+L P+ P +GG + H LSL+ +++ ++L + R+ Sbjct: 57 RYPEL---RVPDSPTQLVGGAGFATDFTEAAHLERMLSLDDVFDRDELVAWNNRVENEVG 113 Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV--- 176 + + E KIDG +++ Y G+ AA RGDG GEDV+ R I +P Sbjct: 114 RDPY----YLCELKIDGVALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLTR 169 Query: 177 -LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITR 234 L IP ++EVRGEV+ DF ALN ++ G+ P+ANPRN+A+G LR+ NP R Sbjct: 170 AADLPIPAVLEVRGEVFFMLADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARR 229 Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 L HG+G+T ++ ++ G PV + + R Sbjct: 230 KLRMICHGIGRTDGFAPASLHDAYTALKAWGLPVAEQTARVRGLAAVEDRIGYWGEHRYE 289 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 + ++IDG+V KVD+F+LQ++LG +R+PRW +++K+ ++A T+LLDI + +GRTG +TP Sbjct: 290 IDHEIDGVVVKVDDFALQRRLGTTSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTP 349 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 A + PV + G+ + ATLHN +K + + +GD V++++AG+VIP+V+ Sbjct: 350 FAFMTPVKVAGSTVGLATLHNAAEVKR-----------KGVLIGDTVMIRKAGDVIPEVL 398 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 +V+ R + F P+ CP C + + + A RC +C AQ ER+ H Sbjct: 399 GPVVDLRDGSEREFVMPTTCPECGTTLA-----PAKEGDADIRCPNARSCPAQLRERVFH 453 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 R A +IEGLG + K A I D+FTL T G + Sbjct: 454 VAGRGALDIEGLGYEAATALLK----AGVIADEGDLFTLTEDDLLRTDLFRTKAGTLSAN 509 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 L D+++K + ++L R + +L IRHVG AR+LA + S Sbjct: 510 GRRLLDNLDKAKTVALWRVLVALSIRHVGPTAARALATEFGSLDAIMAA----------S 559 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654 L V VG IA A+ E++ + V+ + +V +E +V Sbjct: 560 TERLAAVEGVGPTIAAALTEWFTVDWHRAIVDKWRAAGVRMADERDASVPRTLEGLTVVV 619 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TG+L R A+E + G + +S+KTD ++ GD PGSK +KA +LGV +++E+ F Sbjct: 620 TGSLAGFSRDDAKEAIIARGGKAAGSVSKKTDYVVAGDAPGSKYDKAVKLGVPVLDEDGF 679 Query: 715 LFLLQ 719 LL Sbjct: 680 RELLA 684 >gi|300867541|ref|ZP_07112191.1| DNA ligase [Oscillatoria sp. PCC 6506] gi|300334429|emb|CBN57361.1| DNA ligase [Oscillatoria sp. PCC 6506] Length = 690 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 227/730 (31%), Positives = 354/730 (48%), Gaps = 65/730 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + ++ + L +++ YY PI+ D YD L R + P+L E Sbjct: 2 MPEVQQRVQQLRKQLQEASYAYYVLDTPIMPDEVYDRLYRELQELETQHPELISLE---S 58 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ-------------- 119 P ++G + V H+IP SLE +NIE+ K+ R R Sbjct: 59 PTQRVGEKPATHFSSVRHNIPLYSLENAFNIEEFIKWEERWQRGIGTNEGELATGNTLES 118 Query: 120 -KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 +K + E KIDG+ + + YE G V A RGDG +GE+++ ++ I +IP L Sbjct: 119 SQKTSPVSKYVCELKIDGSALALTYENGILVRGATRGDGVTGEEITQNVKTIRSIPLQLQ 178 Query: 179 -LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYL 236 + P ++EVRGE ++S F +N E G +ANPRNAA+G LR+L+ R L Sbjct: 179 LEDCPPLVEVRGEAFLSLAVFEEINQEREKSGDSLFANPRNAAAGTLRQLDSKIVAKRRL 238 Query: 237 NFFVHGL---GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293 +FF + L GK A Q + L+ ++ +GF VN + + YY R Sbjct: 239 DFFAYTLQIPGKEDIEVADTQCKSLELLQQMGFKVNPNRQLCLALDEVREYYQYWDIERR 298 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 LPY DG+V K+++ LQKQLG + PRW ++ K+ ++A T + I + +GRTG LT Sbjct: 299 NLPYMTDGVVVKINDLRLQKQLGFTQKFPRWAVALKYPAEEAPTLVESIAVSVGRTGALT 358 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 PVA L+PV + G ++ ATLHN D I L +I +GD V+V++AGE+IP+V Sbjct: 359 PVAELKPVQLAGTTVSRATLHNSDRILSL-----------NIHIGDTVIVRKAGEIIPEV 407 Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473 V ++ R AQ F PS CP C VVR+ A RC +C A L Sbjct: 408 VRVLPELRPEGAQSFQMPSCCPECGQPVVREKGE------AVTRCINT-SCPAILRGALI 460 Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533 HF SRDA +I G+G++ + S + ADI+ L + + + G Sbjct: 461 HFCSRDAVDINGIGEKLVQQLVDSN----LVHSVADIYDLTVERLMN------LERMGKK 510 Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593 L +I + R ++ LGIRHVG+ A L + + + A Sbjct: 511 LADKLVGAIANSKTQPWSRILYGLGIRHVGSVNAVLLTERFPDVEQLAAASAA------- 563 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSE---IEN 649 ++ V +G IAQ++ +++Q P N +E L + V + + Sbjct: 564 ---TIEGVYGIGPEIAQSVYQWFQVPANQNLIERLKVAGLQLKSEATSNKVEGKNLLLAG 620 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 K V TGTL ++R +A+E + + G V+ +S KT+ ++VG++ GSKLEKAQ+LG+ + Sbjct: 621 KVFVITGTLPTLKRDEAKELIQKAGGKVTNSVSAKTNYLVVGEDAGSKLEKAQELGIVQL 680 Query: 710 NEEQFLFLLQ 719 +E Q L +++ Sbjct: 681 SEAQLLEMIK 690 >gi|229015686|ref|ZP_04172669.1| DNA ligase [Bacillus cereus AH1273] gi|229021878|ref|ZP_04178448.1| DNA ligase [Bacillus cereus AH1272] gi|228739424|gb|EEL89850.1| DNA ligase [Bacillus cereus AH1272] gi|228745603|gb|EEL95622.1| DNA ligase [Bacillus cereus AH1273] Length = 669 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 248/715 (34%), Positives = 390/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMGE--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R++ Q DD ++ + E Sbjct: 58 DSPSIRVGGTILDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVH---QGIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTVVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC AC AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD+++L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIESSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKTINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLLVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|86157121|ref|YP_463906.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-C] gi|123723230|sp|Q2INT9|DNLJ_ANADE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|85773632|gb|ABC80469.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-C] Length = 687 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 232/707 (32%), Positives = 364/707 (51%), Gaps = 42/707 (5%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L + I D YY +P++ D+EYD L AI P+L + + P ++ G + Sbjct: 13 LRERIRAADHAYYVLDQPVLADAEYDRLMHELQAIEAEHPELVTA---DSPTQRVSGAPS 69 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 +V H P LSL + + ++L +F R+ R + ++ + +EPK+DG + + Y Sbjct: 70 ERFERVVHREPMLSLGNVQSDDELHEFDARVRRLLGLPEGEAVGYVVEPKLDGLAVELVY 129 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRA------IPTIPRVLSLNIPEIIEVRGEVYISKND 197 G F + RGDG +GEDV+A +R +P L P +EVRGEV + K Sbjct: 130 RDGAFTGGSTRGDGVNGEDVTANLRVVGGLGANRGVPHALEGTPPPRVEVRGEVLLFKEH 189 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F A+N +++ G +P+ANPRNAA+G LR+L+ R L+F + + +E Sbjct: 190 FEAMNRQLVRAGDEPFANPRNAAAGTLRQLDWRVTARRPLSFVAYEALVPGGDPWRTHWE 249 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ + GF N R+ +++Y + M R LPYD DG+V KVD+ +++LG Sbjct: 250 KLEALAAWGFETNPENRRCRGLGEVLAYRDRMAERRFELPYDTDGIVVKVDDLDWRRRLG 309 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++ PRW ++ K+ ++ +TR+ I +GRTG+LTPV +PV + GA++ ATLHNE Sbjct: 310 AASKFPRWAVAFKYPPQEEATRIRRIWASVGRTGVLTPVVDFDPVRLSGAMVARATLHNE 369 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D ++ +DI GD VLV+RAGEVIP+VV + R + +PF FP+ CP+ Sbjct: 370 DEMRR-----------KDILEGDWVLVRRAGEVIPEVVKPLPERRTGEERPFRFPAECPV 418 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C +RVVR+ K +RCTG AC AQ + R+ HF R A +IEGLG++ + Sbjct: 419 CGARVVREEGEK------VYRCTGA-ACPAQLVGRICHFAQRRALDIEGLGEKLAAGLVE 471 Query: 497 S---EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 +D A +P +++ + + S N+ ++ + R+ +L RF Sbjct: 472 RGQVKDFADLYAVPFEVWQQLFSRPRKEQDAGAARELPEKSAQNMVAALERSRSTTLRRF 531 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F+LGI VG A +LA+++ D +L V VG A I Sbjct: 532 LFALGIPQVGEATAATLARHFGDLARILDA----------DEEALKGVRDVGPETASEIR 581 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + Q P+N VE LL + K +V TG L + R A+ V + Sbjct: 582 AWTQEPQNRRVVERLLAAGVRPEPEVVEAR-GPFAGKTVVLTGGLSAMSRDDAKAEVERR 640 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G VS +SRKTD+++ G+ GSKLEKA+ LGV+++ EE+F+ LL++ Sbjct: 641 GGKVSGSVSRKTDLVVAGEEAGSKLEKARSLGVRVVGEEEFVRLLKE 687 >gi|257865964|ref|ZP_05645617.1| DNA ligase [Enterococcus casseliflavus EC30] gi|257872297|ref|ZP_05651950.1| DNA ligase [Enterococcus casseliflavus EC10] gi|257799898|gb|EEV28950.1| DNA ligase [Enterococcus casseliflavus EC30] gi|257806461|gb|EEV35283.1| DNA ligase [Enterococcus casseliflavus EC10] Length = 676 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 230/711 (32%), Positives = 370/711 (52%), Gaps = 53/711 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 ++ + L +++ + YY +P + D YD L I +P L + P Sbjct: 6 KEIQSRAEELRTQLNQYAYEYYVKDQPSVEDYLYDQLYAELVEIETNYPQLV---TEDSP 62 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG + KVTH IP SL +++ E + F R+ + K ++ + E KI Sbjct: 63 TQRVGGIILPGFEKVTHDIPLYSLNDVFDKEGIVAFDARVQKALGK----AVDYVCELKI 118 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I+++YE+G+FV A RGDG GE+++ ++ + +IP L I +EVRGE Y+ Sbjct: 119 DGLSISLKYEEGRFVRGATRGDGTVGENITENLKTVKSIPLKLKEPIS--LEVRGECYMP 176 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG 253 K FL LN + G + +ANPRNAA+G LR+L+ R L+ F++ L I A Sbjct: 177 KASFLKLNQQREEEGAEVFANPRNAAAGSLRQLDTRIAAQRNLSTFLYTLADFGPIEAND 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q+ L ++ LGF N+ R +T + +Y E RS LPY+IDG+V KV+ F Q Sbjct: 237 QFSALNELDQLGFRTNHERRVCHTIDEVWAYIEEFHDKRSELPYEIDGVVIKVNNFKDQD 296 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG ++PRW ++KF ++A T + I+ +GRTG++TP A + PV + G ++ A+L Sbjct: 297 ALGFTVKAPRWAAAYKFPPEEAETVIETIEWTVGRTGVVTPTAVMTPVRVAGTTVSRASL 356 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D+IK +DIR+GD V++ +AG++IP+V ++ +R +Q F P+ Sbjct: 357 HNVDFIKM-----------KDIRIGDSVIIYKAGDIIPEVAKVLEEKRTEASQSFESPTH 405 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S ++ A RC C AQ E L HFVSR+A NI+GLG + L+ Sbjct: 406 CPECGSELIHLDEE------VALRCINPK-CPAQIKEGLSHFVSRNAMNIDGLGPRVLEQ 458 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F ++ AD++ L Q + + + S NL +I++ + S+ER Sbjct: 459 MFDKS----LVKDVADLYFLTEEQLLT------LDKIKEKSANNLLRAIHQSKGNSVERL 508 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF LGIRHVGA+ AR LA+++ + ++ +I + +G IA+++V Sbjct: 509 IFGLGIRHVGAKAARILAEHFGDLRALSKAKE----------EEIISLEAIGATIAESVV 558 Query: 614 EFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ N ++ L + ++V S + K +V TG L R +A+E Sbjct: 559 TYFDNQEVHDLLDELERAGVNFAYLGLRNEQLEDVESPFKEKTVVLTGKLSHFTREEAKE 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LG V+ +S+KTDI++ G+ GSKL KAQ LGV + +E Q + ++ Sbjct: 619 RIENLGGKVTGSVSKKTDIVVAGEEAGSKLTKAQSLGVTVWDEAQMVAAIE 669 >gi|163938297|ref|YP_001643181.1| NAD-dependent DNA ligase LigA [Bacillus weihenstephanensis KBAB4] gi|229165272|ref|ZP_04293059.1| DNA ligase [Bacillus cereus AH621] gi|254781256|sp|A9VRG3|DNLJ_BACWK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|163860494|gb|ABY41553.1| DNA ligase, NAD-dependent [Bacillus weihenstephanensis KBAB4] gi|228618097|gb|EEK75135.1| DNA ligase [Bacillus cereus AH621] Length = 669 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 246/715 (34%), Positives = 389/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R++ Q DD ++ + E Sbjct: 58 DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVH---QGIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 IQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD+++L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LELERFGEKSATNLVQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKTINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLLVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|150007448|ref|YP_001302191.1| DNA ligase [Parabacteroides distasonis ATCC 8503] gi|298375424|ref|ZP_06985381.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_19] gi|166216223|sp|A6LA55|DNLJ_PARD8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|149935872|gb|ABR42569.1| DNA ligase [Parabacteroides distasonis ATCC 8503] gi|298267924|gb|EFI09580.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_19] Length = 664 Score = 537 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 228/708 (32%), Positives = 353/708 (49%), Gaps = 50/708 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++ +L E+ H+ YY S P I D E+D + + + A P+ A DP+ P Sbjct: 2 VEAKIKALRDELERHNYNYYVLSAPTISDFEFDKMMKELQELEAAHPEFA---DPDSPTR 58 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G +++ +V H P LSL ++ +++R F R R + E K DG Sbjct: 59 RVGSDLSKEFEQVVHKYPMLSLGNTYSEDEIRDFYDRTVRSL----NEPFEIVAELKYDG 114 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195 T I++ YEKG+ A RGDG G+DV+A I+ I ++P L + PE E+RGEV + Sbjct: 115 TSISLTYEKGRLTRAVTRGDGTRGDDVTANIKTIRSVPLRLRGSDFPEEFEIRGEVLLPW 174 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 +F LN E +ANPRNAASG L++ NP + + A+G Y Sbjct: 175 AEFDRLNKEREEQEEPLFANPRNAASGTLKQQNPAIVASRKLDAYFYYLLGENLPAEGHY 234 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ R GF + + +R+ + I Y R LP DG+V KV+ Q+ L Sbjct: 235 ENLQAARAWGFKIPDVIRKCQSLQDIFDYIAYWDVERKNLPVATDGIVLKVNSLRQQRNL 294 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++SPRW I++KF ++A TRL + Q+GRTG +TPVA LEPV + G ++ A+LHN Sbjct: 295 GFTSKSPRWAIAYKFQAERAETRLNSVSFQVGRTGTVTPVANLEPVLLAGTVVKRASLHN 354 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434 D I+GL D+ +GD+V V++ GE+IPK+V + V R F C Sbjct: 355 ADIIEGL-----------DLHIGDQVYVEKGGEIIPKIVGVNVEARSMLMGDKVRFIRVC 403 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + +VR AAH C C Q R++HFV+R A NI + Sbjct: 404 PECGTPLVRPEGE------AAHYCPNESGCPPQIKGRIEHFVTRKAMNINIGPET----- 452 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + A ++ AD++TL + + + + S NL S+ + + + ER + Sbjct: 453 VEDLYNAGYVKDSADLYTLTVAD------LLRLERWAEKSAQNLMSSLEESKQVPFERVL 506 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F LGIR VG +A+ L + S + Q L+ V +G+ IAQ+++ Sbjct: 507 FGLGIRFVGETVAKRLVSAFHSIEALEQA----------SLEDLVAVDEIGERIAQSVLS 556 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 ++ + +N V L ++ E+ N S +++ +V +GT K R + + + Q Sbjct: 557 YFSDEKNRTLVNRLKEQGLRMAVSEEQLANRSEKLKGLTIVISGTFSKHSRDEYKAMIEQ 616 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 G S +S KTD I+ G+N G +KLEKA +LGVKI+NE+ FL +L+ Sbjct: 617 HGGKNSGSVSGKTDYILAGENMGPAKLEKAAKLGVKIINEDAFLNMLE 664 >gi|116873191|ref|YP_849972.1| NAD-dependent DNA ligase LigA [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466434|sp|A0AJL1|DNLJ_LISW6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116742069|emb|CAK21193.1| DNA ligase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 670 Score = 537 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 247/711 (34%), Positives = 369/711 (51%), Gaps = 53/711 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K L + + YY P + D+EYD + I A P+ P+ P + Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPDSPSKR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ KV H P LSL +N +DL F RI K + I + E KIDG Sbjct: 61 VGGEVLEGFTKVAHDTPMLSLANAFNRDDLADFDRRIRD----KVGDDIAYMCELKIDGL 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 ++++YE GK+ A RGDG GED++A +R I +IP L + IEVRGE ++ K Sbjct: 117 AVSLQYENGKYKQGATRGDGTVGEDITANLRTIRSIPMKLQKDFS--IEVRGEAFMPKRS 174 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+ G+ +ANPRNAA+G LR+L+ +R L+ F++ + E+ E Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVTTHSE 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R N + +Y +E R+ L YDIDG+V K+++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCNNLEEVYAYIDEWTEKRAELAYDIDGIVLKLNDLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D + +DIR+GD VL+K+AG++IP+V+ I ER +PF P CP Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPT 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CGSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L + K+ + G+ SVTNL SI + SLE+ +F Sbjct: 457 E----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N D +L + +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNLKMA----------DKETLTSINDIGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 N +E L + K K +V TG L+K+ R+ A+ + Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667 >gi|326317205|ref|YP_004234877.1| DNA ligase, NAD-dependent [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374041|gb|ADX46310.1| DNA ligase, NAD-dependent [Acidovorax avenae subsp. avenae ATCC 19860] Length = 732 Score = 537 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 262/756 (34%), Positives = 384/756 (50%), Gaps = 89/756 (11%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 E+ + +++L ++ YY P + D+EYD + + A+ A P+L P+ Sbjct: 15 DPEELGRRVAALRAQLHQWAHQYYVLDAPTVPDAEYDRVFQALQALEAAHPELV---TPD 71 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKDD-NSIFFT 129 P ++ G + L V H++P LS+ + E F R+ R + D + + + Sbjct: 72 SPTQRVIGAVMEGLTPVRHTVPMLSIRTETDTEASGAETFDARVRRELKLAPDASPVEYV 131 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTI----PRVLSLNIPEII 185 EPK DG +++RYE G+ V AA RGDG GEDV+ IR I I P +P ++ Sbjct: 132 AEPKFDGLAMSLRYENGRLVQAATRGDGEVGEDVTHNIRTIRQIPLTLPTGGDKGVPPVL 191 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG 244 EVRGEVY+ + DF LN+ G K + NPRNAA+G +R+L+ R L+FF +GLG Sbjct: 192 EVRGEVYMRRADFDRLNERQREAGGKTFVNPRNAAAGAVRQLDSGIAAQRPLSFFAYGLG 251 Query: 245 KTSE-----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + ++MLQ+++ GFPV VR A +V+++ E+ R LPYDI Sbjct: 252 DITPAAEGGPDFATHFDMLQQLKAWGFPVAAQVRTALGAAELVAFHREVGESRDQLPYDI 311 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKV+ +LQ+QLG R PRW ++HK+ ++ TR+ ID+Q+GRTG LTPVARL Sbjct: 312 DGVVYKVNSLALQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDVQVGRTGKLTPVARLA 371 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV------ 413 PV +GG +TNATLHN I+ + +RVGD+V+V+RAG+VIP+V Sbjct: 372 PVFVGGVTVTNATLHNLFEIRK-----------KGVRVGDQVIVRRAGDVIPEVVGTVPA 420 Query: 414 -----------------------------VDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444 R P F P CPIC S VVR+ Sbjct: 421 ALLPVAGALQGSDALVDAASGADGTAPGADAARAAPRSPYVPNFRMPRQCPICGSAVVRE 480 Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504 A HRCTGGL C AQ+ E L HF R A +IEGLG++ +D + I Sbjct: 481 KGE------ANHRCTGGLFCPAQRKEALLHFAQRRAMDIEGLGEKLVDQLVE----GQVI 530 Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564 R D++ L T + ++ + S N+ ++ K ++ +L RF+F LGIRHVG Sbjct: 531 RTLPDLYRL------GLTALSSLDRMAEKSAQNVLAALEKSKHTTLPRFLFGLGIRHVGE 584 Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 A+ LA+++ L+ V VG I+A+AI F+ P N Sbjct: 585 ATAKDLARHFGGLDAIIGA----------SVEQLLEVNDVGPIVAEAIHTFFAQPHNREV 634 Query: 625 VEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 VE L V+ G + + + K V TGTL + R A+E + GA V+ +S+ Sbjct: 635 VEQLRACGVTWKEGPPAERATLPLAGKTFVLTGTLPTLSREDAKERLEAAGAKVAGSVSK 694 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 KT ++ G+ GSKL KAQ+LGV +++E L LLQ Sbjct: 695 KTHYVVAGEEAGSKLTKAQELGVPVLDEAGMLALLQ 730 >gi|255013963|ref|ZP_05286089.1| DNA ligase [Bacteroides sp. 2_1_7] gi|301310547|ref|ZP_07216486.1| DNA ligase, NAD-dependent [Bacteroides sp. 20_3] gi|300832121|gb|EFK62752.1| DNA ligase, NAD-dependent [Bacteroides sp. 20_3] Length = 664 Score = 537 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 228/708 (32%), Positives = 353/708 (49%), Gaps = 50/708 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++ +L E+ H+ YY S P I D E+D + + + A P+ A DP+ P Sbjct: 2 VEAKIKALRDELERHNYNYYVLSAPTISDFEFDKMMKELQELEAAHPEFA---DPDSPTR 58 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G +++ +V H P LSL ++ +++R F R R + E K DG Sbjct: 59 RVGSDLSKEFEQVVHKYPMLSLGNTYSEDEIRDFYDRTVRSL----NEPFEIVAELKYDG 114 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195 T I++ YEKG+ A RGDG G+DV+A I+ I ++P L + PE E+RGEV + Sbjct: 115 TSISLTYEKGRLTRAVTRGDGTRGDDVTANIKTIRSVPLRLRGSDFPEEFEIRGEVLLPW 174 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 +F LN E +ANPRNAASG L++ NP + + A+G Y Sbjct: 175 AEFDRLNKEREEQEEPLFANPRNAASGTLKQQNPAIVASRKLDAYFYYLLGENLPAEGHY 234 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ R GF + + +R+ + I Y R LP DG+V KV+ Q+ L Sbjct: 235 ENLQAARAWGFKIPDVIRKCQSLQDIFDYIAYWDVERKNLPVATDGIVLKVNSLRQQRNL 294 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++SPRW I++KF ++A TRL + Q+GRTG +TPVA LEPV + G ++ A+LHN Sbjct: 295 GFTSKSPRWAIAYKFQAERAETRLNSVSFQVGRTGTVTPVANLEPVLLAGTVVKRASLHN 354 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434 D I+GL D+ +GD+V V++ GE+IPK+V + V R F C Sbjct: 355 ADIIEGL-----------DLHIGDQVYVEKGGEIIPKIVGVNVEARSMLMGDKVRFIRVC 403 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + +VR AAH C C Q R++HFV+R A NI + Sbjct: 404 PECGTPLVRPEGE------AAHYCPNESGCPPQIKGRIEHFVTRKAMNINIGPET----- 452 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + A ++ AD++TL + + + + S NL S+ + + + ER + Sbjct: 453 VEDLYNAGYVKDSADLYTLTVAD------LLRLERWAEKSARNLMSSLEESKQVPFERVL 506 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F LGIR VG +A+ L + S + Q L+ V +G+ IAQ+++ Sbjct: 507 FGLGIRFVGETVAKRLVSAFHSIEALEQA----------SLEDLVAVDEIGERIAQSVLS 556 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 ++ + +N V L ++ E+ N S +++ +V +GT K R + + + Q Sbjct: 557 YFSDEKNRTLVNRLKEQGLRMAVSEEQLANRSEKLKGLTIVISGTFSKHSRDEYKAMIEQ 616 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 G S +S KTD I+ G+N G +KLEKA +LGVKI+NE+ FL +L+ Sbjct: 617 HGGKNSGSVSGKTDYILAGENMGPAKLEKAAKLGVKIINEDAFLNMLE 664 >gi|325675870|ref|ZP_08155554.1| DNA ligase [Rhodococcus equi ATCC 33707] gi|325553841|gb|EGD23519.1| DNA ligase [Rhodococcus equi ATCC 33707] Length = 711 Score = 537 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 226/716 (31%), Positives = 352/716 (49%), Gaps = 44/716 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + R+ L + + H YY PI+ D E+D L +A+ PDL P+ P Sbjct: 23 AEDRERWQELAEVVRNHQFRYYVLDSPIVSDGEFDQLFGELNALEERHPDL---RTPDSP 79 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY------RFWQKKDDNSIFF 128 +GG V H LSL+ +++ ++LR +I RI R + + Sbjct: 80 TQLVGGGFATEFKAVDHLERMLSLDNVFDYDELRTWIGRIEAEVSDGRSAGSAAHPDLHY 139 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEI 184 E KIDG + + YE G+ V AA RGDG +GEDV+ R I IP L+ IP + Sbjct: 140 LCEVKIDGVALNLVYENGRLVRAATRGDGRTGEDVTLNARTISDIPETLTPSDEYPIPAL 199 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +EVRGEV+ DF ALN ++A G+ P+ANPRN+A+G LR+ NP R L HGL Sbjct: 200 LEVRGEVFFRLEDFAALNASLVADGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGL 259 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G+T GQY+ + G PV+ + +V R + ++IDGLV Sbjct: 260 GRTEGFDPVGQYDAYTALAAWGLPVSTHTSRVVGADAVVEKVKYWDEHRHDVEHEIDGLV 319 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KVDE SL ++LG +R+PRW +++K+ ++A+T+L+DI + +GRTG +TP A +EPV + Sbjct: 320 VKVDEMSLHRRLGATSRAPRWAVAYKYPPEEATTKLVDIRVSVGRTGRVTPFAYMEPVLV 379 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G+ + ATLHN +K + + +GD V++++AGEVIP+V+ +V+ R Sbjct: 380 AGSTVALATLHNASEVKR-----------KGVLIGDTVVIRKAGEVIPEVLGPVVDVRDG 428 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + F P+ CP C + + + A RC +C AQ ER+ H R AF+I Sbjct: 429 SEREFVMPTECPECGTTLA-----PAKEGDADIRCPNQRSCPAQLRERVFHVAGRGAFDI 483 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 E LG + + A I D+F+L G + L D++ Sbjct: 484 EVLGYEAATALLQ----AGVISDEGDLFSLTEDDLLEAPLFRTKAGKLSANGRRLLDNLG 539 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + L R + +L IRHVG AR+LA + S + L V Sbjct: 540 SAKQQPLWRVLVALSIRHVGPTAARALASEFGSLERIENA----------GVEELAAVDG 589 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 VG IA A+V +++ + V ++++ +E +V TG+L+ R Sbjct: 590 VGGTIAAAVVAWFEVDWHRDIVAKWRAAGVTMEDERDESIVRNLEGLSIVVTGSLEGFSR 649 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A+E + G + +S+KT +++G+ PGSK KA++LGV I++E+ F LL+ Sbjct: 650 DEAKEAILVRGGKAAGSVSKKTAFVVIGEAPGSKAAKAEELGVPILDEDGFRRLLE 705 >gi|329848744|ref|ZP_08263772.1| DNA ligase, NAD-dependent [Asticcacaulis biprosthecum C19] gi|328843807|gb|EGF93376.1| DNA ligase, NAD-dependent [Asticcacaulis biprosthecum C19] Length = 714 Score = 537 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 267/733 (36%), Positives = 399/733 (54%), Gaps = 44/733 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++++ AR S L ++ YH YY+ P + D++YDAL+++ + FPDL SE Sbjct: 1 MTLDDARALHSELAAQVQYHRGLYYREETPELTDADYDALEKQLRDLEAQFPDLKTSE-- 58 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P +G ++ V H +P LSL+ + ED+ F RI RF + + + F E Sbjct: 59 -SPTQTVGAVISEKFSPVVHGVPMLSLDNAFADEDVTDFEDRIRRFLKLPAEEPVVFAAE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 PKIDG ++ Y G+ V A RGDG +GEDV+ IR I IP LS PE IE+RGE Sbjct: 118 PKIDGLSCSLLYVNGELVRGATRGDGRTGEDVTENIRTIADIPHRLSGTGHPERIEIRGE 177 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 +Y+ F +N + A G + YANPRN ASG LR+L+ R L FF + G+ S+ Sbjct: 178 IYVPLQAFADMNAKAQAEGGRTYANPRNFASGSLRQLDTAVTAARPLRFFAYTWGEVSDD 237 Query: 250 FAK-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q E L K R G VN Q + G++ YN + RS L YDIDG+VYKVD Sbjct: 238 GFAATQTEALAKFREWGLQVNPQSAQVDGAAGLLDVYNRIGRDRSGLGYDIDGVVYKVDR 297 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q++LG +RSPRW I+HKF +QA TRL IDIQ+GR G +TPVARL+PVN+GG ++ Sbjct: 298 LDWQRRLGFVSRSPRWAIAHKFPAQQALTRLAAIDIQVGRMGTMTPVARLQPVNVGGVVV 357 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 TN TLHN D I+ +DIR+GD V V+RAG+VIP++V I +ER A P+ Sbjct: 358 TNVTLHNADEIER-----------KDIRIGDMVRVQRAGDVIPQIVGIEPDERPDTAVPY 406 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CP V G A +C+G AC Q+ E LK+ VSR +IEGLG+ Sbjct: 407 EFPTVCPCPLKTEVVREQNAAGTEGVARKCSGDQACPHQRTEYLKYVVSRRVLDIEGLGE 466 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQR-----------RQQTSTTKIENILGFGDVSV-- 535 ++ F + + PADI+ L ++ + + G Sbjct: 467 TYIEIFNR----GGILAEPADIYRLHEKAEAAKVIVLEERKRQSAARQEKSGQAVKKQVA 522 Query: 536 ---------TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 L+ +I+ RR++ LERFI +LGI+HVG A+ LA+ ++S + F + Sbjct: 523 DTDRAFTDLDKLFAAIDIRRDLPLERFIAALGIKHVGDTTAKLLARAFVSERAFHDTLVK 582 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 + + + S+ + VG +IA+++ ++ +P E +++V + S Sbjct: 583 AAEGDEEAFNSVKDLNQVGPVIARSVTSYFAHPYQRGIYERFIEQVRVQDAEAVAST-SP 641 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + K +VFTGTL+K+ R +A+ +LGA VS +S+KTD+++ G GSKL+ A +LG+ Sbjct: 642 VSGKTVVFTGTLEKLTRDEAKAQAERLGAKVSGSVSKKTDLVVAGPGAGSKLKTAAELGI 701 Query: 707 KIMNEEQFLFLLQ 719 +++ E+++L L+ Sbjct: 702 QVLTEDEWLSLIA 714 >gi|325570045|ref|ZP_08145970.1| NAD-dependent DNA ligase LigA [Enterococcus casseliflavus ATCC 12755] gi|325156873|gb|EGC69044.1| NAD-dependent DNA ligase LigA [Enterococcus casseliflavus ATCC 12755] Length = 687 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 235/725 (32%), Positives = 378/725 (52%), Gaps = 54/725 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 +K ++ I ++ S E + L +++ + YY +P + D YD L I Sbjct: 4 LKNKEDIRMDVPSKE-IQSRAEELRTQLNQYAYEYYVKDQPSVEDYLYDQLYAELVEIET 62 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 +P L + P ++GG + KVTH IP SL +++ E + F R+ + K Sbjct: 63 NYPQLV---TEDSPTQRVGGIILPGFEKVTHDIPLYSLNDVFDKEGIVAFDARVQKALGK 119 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 ++ + E KIDG I+++YE+G+FV A RGDG GE+++ ++ + +IP L Sbjct: 120 ----AVDYVCELKIDGLSISLKYEEGRFVRGATRGDGTVGENITENLKTVKSIPLKLKEP 175 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFF 239 I +EVRGE Y+ K FL LN + G + +ANPRNAA+G LR+L+ R L+ F Sbjct: 176 IS--LEVRGECYMPKASFLKLNQQREEEGVEVFANPRNAAAGSLRQLDTRIAAQRNLSTF 233 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 ++ L I A Q+ L ++ LGF N+ R +T + +Y E RS LPY+I Sbjct: 234 LYTLADFGPIEANDQFSALNELDQLGFRTNHERRVCHTIDEVWAYIEEFHDKRSELPYEI 293 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KV+ F Q LG ++PRW ++KF ++A T + I+ +GRTG++TP A + Sbjct: 294 DGVVIKVNNFKDQDALGFTVKAPRWAAAYKFPPEEAETVIETIEWTVGRTGVVTPTAVMT 353 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G ++ A+LHN D+IK +DIR+GD V++ +AG++IP+V ++ Sbjct: 354 PVRVAGTTVSRASLHNVDFIKM-----------KDIRIGDSVIIYKAGDIIPEVAKVLEE 402 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R ++PF P+ CP C S ++ A RC C AQ E L HFVSR+ Sbjct: 403 KRTETSEPFEAPTHCPECGSELIHLDEE------VALRCINPK-CPAQIKEGLSHFVSRN 455 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A NI+GLG + L+ F + ++ AD++ L Q + + + S NL Sbjct: 456 AMNIDGLGPRVLEQMFDK----YLVKDVADLYFLTEEQLLT------LDKIKEKSANNLL 505 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I++ + S+ER IF LGIRHVGA+ AR LA+++ + ++ +I Sbjct: 506 RAIHQSKENSVERLIFGLGIRHVGAKAARILAEHFGDLRTLSKAKE----------EEII 555 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVF 654 + +G IA+++V ++ N ++ L K + V S + K +V Sbjct: 556 SLETIGATIAESVVTYFDNQEVHDLLDELEKAGVNFAYLGLRTDQLEEVESPFKEKTVVL 615 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TG L R +A+E + LG V+ +S+KTDI++ G+ GSKL KAQ LGV + +E Q Sbjct: 616 TGKLSHFTREEAKERIENLGGKVTGSVSKKTDIVVAGEEAGSKLTKAQSLGVTVWDEAQM 675 Query: 715 LFLLQ 719 + ++ Sbjct: 676 VAAIE 680 >gi|254283004|ref|ZP_04957972.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR51-B] gi|219679207|gb|EED35556.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR51-B] Length = 675 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 243/717 (33%), Positives = 374/717 (52%), Gaps = 52/717 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E++ L + I YYQ P + D++YDA RR + A P+LA P Sbjct: 1 MDPATV-AEVAELRERIKRWALEYYQQDAPSVPDADYDAAFRRLHELESAHPELA---SP 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G + +VTH +P LSL+ ++ +D F R+ K N+I + E Sbjct: 57 DSPTRRVGAQPIAGFEQVTHRLPMLSLDNAFSSDDFDAFDQRVSERLGK---NAIDYCCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG +++ YE+GK AA RGDG GED++ +R I IP P+++EVRGE Sbjct: 114 PKLDGIAVSLIYERGKLTQAATRGDGVVGEDITHNVRTIEAIPLALEGGGFPDVLEVRGE 173 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT--- 246 V++ + F LND A G K + NPRNAA+G LR+L+P R L+F + +G Sbjct: 174 VFMPRVGFERLNDRARASGDKLFVNPRNAAAGSLRQLDPRVTARRPLDFCCYSVGFCSGQ 233 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ ++ G PV+ ++ A +YY + R LP+DIDG+V+KV Sbjct: 234 IRDLGDRHSAVIARLGEWGLPVSQWMKVATAAEACEAYYQWLAGERDGLPFDIDGIVFKV 293 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q+ LG +R+PRW I+ KF ++ TR+LD++ Q+GRTG +TPVARL+PV +GG Sbjct: 294 DDLESQRILGFVSRAPRWAIARKFPAQEQRTRVLDVEFQVGRTGAITPVARLDPVFVGGV 353 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++NATLHN D I+ L + +GD V+++RAG+VIP+VV +I+ ER + Sbjct: 354 TVSNATLHNADEIERL-----------GLCIGDSVIIRRAGDVIPQVVAVILEERDESVR 402 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 FP CP C S V R AA RC GGL C AQ+ L+HF SR A +I+GL Sbjct: 403 AVVFPDHCPACGSEVERVEGE------AAFRCVGGLICPAQRRASLQHFASRKAMDIDGL 456 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++ ++ E I A ++ L S + G+ S NL +++K + Sbjct: 457 GEKVIEQLVARE----LITDIAGLYGLDLETLVS------LDRMGEKSAENLVAALDKSK 506 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI++LGIR VG AR+LA ++ S + L V VG Sbjct: 507 ATTLARFIYALGIREVGESTARALAMHFGSLDAIEGAGQEV----------LEEVDDVGP 556 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH---EKNVSSEIENKKLVFTGTLQKIQR 663 ++A I F+ N +EAL++ + + V +G L+ + R Sbjct: 557 VVATHIRNFFSEAANRRTIEALIEAGVHWPDPVDSMAAGEEGALAGESWVVSGKLESMSR 616 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +A + + LGA V+ +S KT ++ G GSKL+KA+ LG+ +++E FL LL++ Sbjct: 617 DQASDRLRSLGARVTGGVSNKTTRLLAGPGAGSKLKKAESLGLPVLDESDFLALLEE 673 >gi|17229209|ref|NP_485757.1| NAD-dependent DNA ligase LigA [Nostoc sp. PCC 7120] gi|81772126|sp|Q8YW98|DNLJ_ANASP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|17135537|dbj|BAB78083.1| DNA ligase [Nostoc sp. PCC 7120] Length = 677 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 228/713 (31%), Positives = 366/713 (51%), Gaps = 55/713 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K + L + + YY PI+ D+ YD L R + P+L P+ P +I Sbjct: 9 KRVEELRRLLQQASYAYYVSDAPIMEDAVYDQLYRELQQLEIQHPELV---TPDSPTQRI 65 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G V H+IP SLE +N+E+L+ + R R + + E KIDG+ Sbjct: 66 GERPATQFLSVRHNIPLYSLENAFNVEELQAWDQRWRR---QVAPTEAEYVAELKIDGSA 122 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGEVYISK 195 I + Y+ G V A RGDG +GED++ +R I +IP L+ + E +EVRGE ++ Sbjct: 123 IALTYQNGILVRGATRGDGVTGEDITQNVRTIRSIPLRLNFDGIEKVEKVEVRGEAFLPL 182 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL---GKTSEIFA 251 F +N+E G + +ANPRNAA+G LR+L+ R L+FF + L G A Sbjct: 183 EVFKQINEERQKAGEQLFANPRNAAAGTLRQLDSRIVARRRLDFFAYTLHISGMDDASIA 242 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q+E L+ ++ +GF VN + + + YY + R LPY DG+V K++ F L Sbjct: 243 NTQWEALELLQKMGFRVNPNHKLCQSLAEVADYYKYWDTERLNLPYMTDGVVLKLNSFKL 302 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+QLG R PRW ++ K+ ++A TR+ +I + +GRTG LTP+A++ PV + G ++ A Sbjct: 303 QEQLGFTQRFPRWAVALKYPAEEAPTRVENIAVNVGRTGALTPLAQMRPVQLAGTTVSRA 362 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I L DIR+GD V+V++AGE+IP+VV +I R D QPF P Sbjct: 363 TLHNSDRIAQL-----------DIRIGDTVIVRKAGEIIPEVVRVIKELRPADTQPFIMP 411 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+C VVR+ A RC +C A ++H+VSRDA +I+G+G++ + Sbjct: 412 THCPVCGQPVVRETGE------AVTRCVNA-SCPAILKGSIEHWVSRDALDIKGVGEKLV 464 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + AD++ L + + + G+ S L ++I + +N Sbjct: 465 YQLVDK----GLVHSVADLYDLTTERLFA------LERMGEKSAQKLIEAIAQSKNQPWS 514 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R ++ LGIRHVG+ A+ L++ Y + + + + + +G IAQ+ Sbjct: 515 RVLYGLGIRHVGSVNAQLLSEKYRAVAELSSAKQS----------DIEGIYGIGAEIAQS 564 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQRHKAQ 667 + ++++ N +E L E V + ++ K V TGTL ++R + + Sbjct: 565 VYQWFRINANQSLIERLQAAGLKLANTEEIPVMNNGILKLNGKTFVVTGTLPTLKRDEVK 624 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + G V+ +S+KTD ++VG++ GSKLEKAQ LG+ + E Q L +L++ Sbjct: 625 ALIQKAGGKVTDSVSKKTDYLVVGEDAGSKLEKAQALGIAQLTETQLLEILEE 677 >gi|283779823|ref|YP_003370578.1| DNA ligase, NAD-dependent [Pirellula staleyi DSM 6068] gi|283438276|gb|ADB16718.1| DNA ligase, NAD-dependent [Pirellula staleyi DSM 6068] Length = 676 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 239/707 (33%), Positives = 376/707 (53%), Gaps = 48/707 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + L +L + I HD YY ++P I D EYD L + I +FP+L P+ P Sbjct: 7 EILERLQALREAIRRHDYLYYVRAQPEISDLEYDRLMQDLTTIEASFPELV---TPDSPT 63 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G E L +V H P LS+E + +EDL+KF R + D ++ + +E K+D Sbjct: 64 QRVGEEPMEGLVQVAHRAPMLSIENSYTVEDLQKFAERTSKSL---DGEAVEWVVELKVD 120 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYIS 194 G I++RYE G V A RG+G G+DV+ +R I +P L + IP ++EVRGEVY++ Sbjct: 121 GVAISVRYENGLLVQALTRGNGEVGDDVTHNVRTIADVPLRLYGDKIPAVLEVRGEVYMT 180 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 +D + LN +G++ YAN RN ASG +R L+P R L VHG+G + A+ Sbjct: 181 NSDLVLLNKRQQELGKELYANTRNVASGTIRLLDPKLCAERKLRMLVHGVGVCEGMTAEN 240 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 + L+++ LG P + TF V Y E+ L +++DGLV KV+ F + Sbjct: 241 HMQFLEQVSSLGLPPTPHCKCFATFSEAVKYCEEIPERLHELDFEVDGLVLKVNRFDQRA 300 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG+R++SPRW+I++KF + +A+T+LL I +Q+G+TG +TPVA LEPV + G ++ A+L Sbjct: 301 KLGQRSKSPRWVIAYKFEKYEATTKLLGISVQVGKTGAITPVAELEPVQLAGTTVSRASL 360 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I +DIR+GD V+V++AG++IP +V + ER D F FP+ Sbjct: 361 HNADEI-----------VRKDIRIGDIVVVEKAGKIIPHIVRVEAAERTTDLPVFQFPTH 409 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S V +D RCT +C AQ E+L+ F +R A +IEGLG + +D Sbjct: 410 CPVCGSDVAKDEG------GVYIRCTNP-SCPAQLREKLRFFATRGAMDIEGLGDKLVDQ 462 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 S+ + D++ L + K+ ++ G+ S T L + I ++ L R Sbjct: 463 LVASK----LVTCYGDLYRL------TLDKLTSLERMGEKSATKLLEGIVASKSRPLSRL 512 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + L IRH+G+ ++ LA+++ + Q L RV VG+I A ++ Sbjct: 513 LNGLSIRHIGSNGSQVLARHFGTLDAIRQAT----------LEDLSRVSEVGEITAASVY 562 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 EF + ++ L+ + K V TGTL K R + ++ + Sbjct: 563 EFLHSDYGKTTIDDLVALGLNTQEPKSAIPTGEGIFAGKTFVVTGTLSKFSRDEVEDLIE 622 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + G S+ +S+KTD ++ G GSKL KA+ LGVKI++E F+ LL Sbjct: 623 KHGGKASSSVSKKTDYLLAGAEAGSKLAKAESLGVKILSEADFIALL 669 >gi|317127163|ref|YP_004093445.1| DNA ligase, NAD-dependent [Bacillus cellulosilyticus DSM 2522] gi|315472111|gb|ADU28714.1| DNA ligase, NAD-dependent [Bacillus cellulosilyticus DSM 2522] Length = 670 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 242/717 (33%), Positives = 394/717 (54%), Gaps = 54/717 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + ++E+ L ++ + YY +P + D+EYD L + A+P+ R Sbjct: 1 MAKDDIKQEIDRLTNILNDYAYHYYVLDQPKVSDAEYDQLLHELTKLEEAYPEWKRD--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG+ KV H +P LSL +N E+LR F R+ + + ++ E Sbjct: 58 DSPSERVGGQPLEHFSKVQHDVPMLSLSNAFNEEELRDFDRRVRQGLG----HEPTYSCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +T++YE+G+FV A RGDG GED+++ ++ +P+IP L + IEVRGE Sbjct: 114 LKIDGLAVTLKYEQGRFVQGATRGDGTVGEDITSNLKTVPSIPLRLKEAV--TIEVRGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 ++ K F+ LN+ G + +ANPRNAA+G LR+L+P R L+ F++ +GK Sbjct: 172 FMPKRSFIRLNEAKEKNGEQLFANPRNAAAGSLRQLDPKIAAKRSLDIFIYSVGKVEGED 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + L ++ LGF N + T ++ Y S R+ LPY+IDG+V KVD + Sbjct: 232 IPSHHGALNYVKELGFKTNEHQKHCKTIDEVIDYCESWLSKRADLPYEIDGIVIKVDALA 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG A+SPRW ++KF ++ T LLDI++ +GRTG++TP A LEPV++ G + Sbjct: 292 DQEQLGFTAKSPRWATAYKFPAEEVVTTLLDIELSVGRTGVITPTAILEPVSVAGTTVQR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ L D+++GD+V +K+AG++IP+VV+++V +R + + FS Sbjct: 352 ASLHNEDLIREL-----------DLKLGDKVTIKKAGDIIPEVVNVLVEQRTGEERDFSM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S ++R A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 PTQCPECHSELIRIEGE------VALRCVNPK-CPAQIREGLIHFVSRNAMNIDGLGERV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F + I AD++ L+R + N+ G+ SV NL +I + SL Sbjct: 454 ITQLFNHK----LIEDVADLYKLER------QLLLNLERMGEKSVDNLLRAIEASKENSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E+ +F LGIRHVGA+ A++LA+++ + L + VG+ +A Sbjct: 504 EKLLFGLGIRHVGAKAAKTLAQHFNTIDQIQNATR----------EDLEAINEVGEKMAD 553 Query: 611 AIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 A+V +++ P + L L+ P+I + ++ K +V TGT++++ R Sbjct: 554 AVVTYFETPEVKELISELEALDINLEYKGPNINVSDDANNAYFSGKTVVLTGTMEQMARG 613 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 A++ + G V+ +S KTD++I G+ GSKL+KAQ L ++I +E +FL L + Sbjct: 614 DAKKEIEARGGNVTGSVSSKTDLLIAGEKSGSKLKKAQDLNIEIWDEARFLEELTKE 670 >gi|256839697|ref|ZP_05545206.1| DNA ligase, NAD-dependent [Parabacteroides sp. D13] gi|256738627|gb|EEU51952.1| DNA ligase, NAD-dependent [Parabacteroides sp. D13] Length = 664 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 228/708 (32%), Positives = 353/708 (49%), Gaps = 50/708 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++ +L E+ H+ YY S P I D E+D + + + A P+ A DP+ P Sbjct: 2 VEAKIKALRDELERHNYNYYVLSAPTISDFEFDKMMKELQELEAAHPEFA---DPDSPTR 58 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G +++ +V H P LSL ++ +++R F R R + E K DG Sbjct: 59 RVGSDLSKEFEQVVHKYPMLSLGNTYSEDEIRDFYDRTVRSL----NEPFEIVAELKYDG 114 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195 T I++ YEKG+ A RGDG G+DV+A I+ I ++P L + PE E+RGEV + Sbjct: 115 TSISLTYEKGRLTRAVTRGDGTRGDDVTANIKTIRSVPLRLRGSDFPEEFEIRGEVLLPW 174 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 +F LN E +ANPRNAASG L++ NP + + A+G Y Sbjct: 175 AEFDRLNKEREEQEEPLFANPRNAASGTLKQQNPAIVASRKLDAYFYYLLGENLPAEGHY 234 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ R GF + + +R+ + I Y R LP DG+V KV+ Q+ L Sbjct: 235 ENLQAARAWGFKIPDVIRKCQSLQDIFDYIAYWDVERKNLPVATDGIVLKVNSLRQQRNL 294 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++SPRW I++KF ++A TRL + Q+GRTG +TPVA LEPV + G ++ A+LHN Sbjct: 295 GFTSKSPRWAIAYKFQAERAETRLNSVSFQVGRTGTVTPVANLEPVLLAGTVVKRASLHN 354 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434 D I+GL D+ +GD+V V++ GE+IPK+V + V R F C Sbjct: 355 ADIIEGL-----------DLHIGDQVYVEKGGEIIPKIVGVNVEARSMLMGDKVRFIRVC 403 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + +VR AAH C C Q R++HFV+R A NI + Sbjct: 404 PECGTPLVRPEGE------AAHYCPNESGCPPQIKGRIEHFVTRKAMNINIGPET----- 452 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + A ++ AD++TL + + + + S NL S+ + + + ER + Sbjct: 453 VEDLYNAGYVKDSADLYTLTVAD------LLRLERWAEKSAQNLMSSLEESKQVPFERVL 506 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F LGIR VG +A+ L + S + Q L+ V +G+ IAQ+++ Sbjct: 507 FGLGIRFVGETVAKRLVSAFHSIEALEQA----------SLEDLVAVDEIGERIAQSVLS 556 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 ++ + +N V L ++ E+ N S +++ +V +GT K R + + + Q Sbjct: 557 YFSDEKNRTLVNRLKEQGLRMAVSEEQLANRSEKLKGLTIVISGTFSKHSRDEYKAMIEQ 616 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 G S +S KTD I+ G+N G +KLEKA +LGVKI+NE+ FL +L+ Sbjct: 617 HGGKNSGSVSGKTDYILAGENMGPAKLEKAAKLGVKIINEDTFLNMLE 664 >gi|225022751|ref|ZP_03711943.1| hypothetical protein CORMATOL_02796 [Corynebacterium matruchotii ATCC 33806] gi|224944472|gb|EEG25681.1| hypothetical protein CORMATOL_02796 [Corynebacterium matruchotii ATCC 33806] Length = 699 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 208/718 (28%), Positives = 347/718 (48%), Gaps = 48/718 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 P E ++ +E L E++ H + YY P I D+E+DAL ++ +A+ P+LA Sbjct: 4 TPAETTDTQEIHQEWQRLASEVTRHRELYYNQ-TPEITDAEFDALFKKLEALEADHPELA 62 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P+ P ++G + S V H LSL+ +++ E+L +++ R+ ++ Sbjct: 63 ---TPDSPTQQVGAPVESSFENVEHLERMLSLDNVFDEEELDEWLQRV---------DAP 110 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV----LSLNIP 182 + E KIDG + + Y G AA RGDG GEDV+ + I +P + IP Sbjct: 111 EYVTELKIDGLSLALVYRNGVLERAATRGDGRIGEDVTENAKVIQDVPHMLTATEEFPIP 170 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVH 241 ++EVRGEV+I+ DF +N++ G KP+ANPRNAA+G LR+ + R L H Sbjct: 171 NLLEVRGEVFIAVEDFAEVNEQRQKDGGKPFANPRNAAAGSLRQKDVEAVRRRKLRMLCH 230 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G+G T QY + + G PV++ + T + + R ++DG Sbjct: 231 GIGATEGFTPASQYHAYEALAAWGLPVSDYTKLVKTIDEVHKQVAYWEKHRGDAVCEMDG 290 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 LV KVD + Q+QLG +R+PRW I++K+ ++ T+LLDI +GRTG +TP A +EPV Sbjct: 291 LVVKVDSIAEQRQLGATSRAPRWAIAYKYPPEEVQTKLLDIHEGVGRTGRVTPYAVMEPV 350 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 ++ G+++ ATLHN+ +K + + +GD V++++AGE+IP+V+ +V R Sbjct: 351 SVAGSIVELATLHNQTEVKR-----------KGVLIGDTVVIRKAGEIIPEVLGPVVERR 399 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 + + FP CP C +++ + RC C AQ R+K+ R F Sbjct: 400 DGTEREYVFPENCPSCGTKLA-----PQREGDVDWRCPNSQKCPAQVAARIKYLADRGRF 454 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +IE LG++ + +S + +F L T+ G + + L + Sbjct: 455 DIEALGEKAAEDLVRS----GVLVDEGGLFNLTEADLLRTSIYTTKKGTLNATGKKLLKN 510 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 + ++ L R + SL IR VG +R+LA Y S + Sbjct: 511 LETAKHTDLWRVMASLSIRMVGNTASRALASRYRSLDALRAAT----------VEDIAET 560 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 VG ++AQ+ ++++ + V+ K + +V TG+L+ Sbjct: 561 EGVGLVMAQSFKDWFEVQWHCDIVDQWAKSGVTMEDDASDQPEQVLAGLTVVVTGSLEGF 620 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R A+E + G S +S+KTD ++VG+ GSK +KA+ LG+ I++E F+ LL Sbjct: 621 TRDSAKEAIISRGGKASGSVSKKTDYVVVGEKAGSKEQKARDLGLTILDEAGFVQLLA 678 >gi|257054924|ref|YP_003132756.1| NAD-dependent DNA ligase LigA [Saccharomonospora viridis DSM 43017] gi|256584796|gb|ACU95929.1| DNA ligase, NAD-dependent [Saccharomonospora viridis DSM 43017] Length = 731 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 223/723 (30%), Positives = 362/723 (50%), Gaps = 44/723 (6%) Query: 5 QLIPIEALS--IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 + P+E + + R+ S+L +EI H YY P I D+E+D L R + + Sbjct: 32 RTTPVEGIQDVPAEVRERHSALVEEIRGHQFRYYVLDAPTISDAEFDQLMRDLERLEAEH 91 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P L P+ P +GG + H LSL+ ++++++L+ +I R+ R Sbjct: 92 PALV---SPDSPTQTVGGTFSTEFRAHDHLERMLSLDNVFDLDELQAWIDRVEREVG--- 145 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----S 178 S + E K+DG + + YE G+ V RGDG +GEDV+ +R + +P L Sbjct: 146 -GSTRYLCELKVDGLAVNLVYENGRLVRGLTRGDGRTGEDVTLNVRTVQDVPERLTATDR 204 Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237 +P+++EVRGEVY +F LN ++ G+ P+ANPRNAA+G LR+ +P +R L Sbjct: 205 FPVPDVVEVRGEVYFRVEEFADLNAALVKAGKAPFANPRNAAAGSLRQKDPKVTRSRPLR 264 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 HGLGK Q E + + G PV+ + ++ ++ Y R Y Sbjct: 265 LVCHGLGKRVGFEPTRQSESYEALAAWGLPVSPYSKVIDSTEELIEYIRYWNEHRYDAAY 324 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 +IDG+V KVD+ SLQ++LG +R+PRW +++K+ ++A+T LLDI + +GRTG +TP A Sbjct: 325 EIDGVVVKVDDVSLQRRLGTTSRAPRWAVAYKYPPEEANTTLLDIRVNVGRTGRVTPYAV 384 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 +EPV + G+ ++ ATLHN + +K + + +GDRV++++AG+VIP+V+ I Sbjct: 385 MEPVKVAGSTVSMATLHNAEEVKR-----------KGVLIGDRVVIRKAGDVIPEVLGPI 433 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 V+ R + F P+ CP C +++ + + RC +C AQ ERL H Sbjct: 434 VDLRTGTEREFVMPTHCPECGTQLAYE-----KEGDVDIRCPNARSCPAQLRERLFHLAG 488 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R AF+IE LG + +S I D+F L G + Sbjct: 489 RGAFDIEVLGYEAAGALLRS----GVIADEGDVFDLTEEDLKRVDLFVTKSGQLSANGRR 544 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L D++ ++ L + + L IRHVG A++LA+ + S Sbjct: 545 LLDNLAAAKDRPLWKVLVGLSIRHVGPTAAQALAREFGSIDAIDAASE----------ER 594 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657 L V VG IA+A+ E++ + VE + + +V +E +V TGT Sbjct: 595 LAEVDGVGPTIAKAVREWFAVDWHREVVEKWRRAGVRMEAERDTSVPRNLEGLSIVVTGT 654 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L++ R +A+E + G + +S+KT ++VGD PGSK +KA QL + +++E+ F L Sbjct: 655 LREFSRDEAKEAIMARGGKAAGSVSKKTAFVVVGDAPGSKYDKAVQLKIPVLDEDGFRVL 714 Query: 718 LQQ 720 L Q Sbjct: 715 LDQ 717 >gi|254476645|ref|ZP_05090031.1| DNA ligase, NAD-dependent [Ruegeria sp. R11] gi|214030888|gb|EEB71723.1| DNA ligase, NAD-dependent [Ruegeria sp. R11] Length = 783 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 294/763 (38%), Positives = 447/763 (58%), Gaps = 57/763 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 + + + ++L++E+AR L+ E+ D Y+Q P I D++YDA KR+ A+A Sbjct: 32 VTQPGDMDPQSLTLEEARPLFEQLQDELRAADLAYHQKDAPEISDADYDAKKRQYRALAE 91 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 AFP+LA L+ +G + K+TH+ +SL ++ +D+ F + ++ Sbjct: 92 AFPNLAAEATE---LDTVGAPVASGFGKITHAQRMMSLGNAFDDDDVADFDKGLRKYLGL 148 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 + +T EPKIDG +++RYE G V+AA RGDG GE+V+A R I IP+ + Sbjct: 149 SASEPLAYTAEPKIDGLSLSLRYENGTLVHAATRGDGAVGENVTANARTIDDIPQEIPNA 208 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P I+EVRGEVY+S DF ALN+ A G K +ANPRNAA+G LR+L+ R L FF Sbjct: 209 -PAILEVRGEVYMSHEDFAALNERHEARGGKTFANPRNAAAGSLRQLDAEITRARPLRFF 267 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ SE + Q++ L ++R +GF N R + ++++Y +++ R+TL YDI Sbjct: 268 AYSWGELSEPLGETQFDALARLRKMGFQTNPLTRHCTSVADLIAHYRQIEEQRATLGYDI 327 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD +LQ +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL+ Sbjct: 328 DGVVYKVDALALQDRLGFRSTTPRWAIAHKFPAELAWTRLEGIDIQVGRTGALSPVARLQ 387 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG +++NATLHNEDYI GLD+ G+ +R G+DIR+GD V V RAG+VIPK+ D+ ++ Sbjct: 388 PVTVGGVVVSNATLHNEDYIAGLDSKGEEIRDGKDIRIGDWVQVYRAGDVIPKIADVDLS 447 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R A+ ++FP+ CP C S VR+ A RCTGGL C AQ +E+LKHFVSR Sbjct: 448 KRPDGAEAYAFPTTCPQCDSPAVREEG------DAVRRCTGGLICPAQAVEKLKHFVSRK 501 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+I+GLG +Q++ F+ D +I+ PADIF+LQ R + TK++N G+G+ S NL+ Sbjct: 502 AFDIDGLGAKQIEMFY--GDETLAIKTPADIFSLQARDAQNLTKLKNRDGWGETSAANLF 559 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN-------------- 585 +I +R I+L R IF LGIRHVG AR LA +Y+ + A+ ++ Sbjct: 560 AAIEDKREIALARLIFGLGIRHVGEVGARDLALHYMDWDAMAEAVDTARPAALAHRAADE 619 Query: 586 -----------------------------NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 ++ W L + +G + ++ + + Sbjct: 620 AEDAERIAAAQANRRARIKEVRDSAIAQCDVPPAARAAWEDLTGIDGIGATLGLSLSDAF 679 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 N A +AL ++ + S + K +VFTGTL+K+ R +A+ LGA Sbjct: 680 ANADERAAFDALRAYLTI-VPPEAPQKDSPVAGKTVVFTGTLEKMTRAEAKARAEGLGAK 738 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V+ +S+KTDI++ G GSK +KA+ LG++I++E+ +L L++ Sbjct: 739 VAGSVSKKTDILVAGPGAGSKEQKARDLGIRILDEDGWLTLIE 781 >gi|327475239|gb|AEA77214.1| DNA ligase [Bacillus sp. 15.4] Length = 668 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 238/717 (33%), Positives = 380/717 (52%), Gaps = 56/717 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + I+ A ++++ L ++ ++ Y+ KP + D+EYD + AI + FP+L Sbjct: 1 MDIKSAEQKVAELHNLLNQYNYEYHVLDKPSVPDAEYDRVMNELIAIENKFPEL---RTA 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KV H P LSL +N EDLR F ++ + + + E Sbjct: 58 DSPTQRVGGSTLQAFEKVQHRTPMLSLGNAFNKEDLRDFDRKVR----QAAGDDYSYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G F A RGDG GED++A ++ I +IP + + +EVRGE Sbjct: 114 LKIDGLAVSLRYEDGLFRQGATRGDGTVGEDITANLKTIKSIPLRIPEPM--TMEVRGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 ++ K F ALN +P+ANPRNAA+G LR+L+P +R L+ +++ + E Sbjct: 172 FMPKRSFEALNKAKEEREEEPFANPRNAAAGSLRQLDPRIAASRNLDIYLYSIADVGETG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + GF N ++ T ++ Y R L YDIDG+V KVD Sbjct: 232 VVSHSSGLDLLDKFGFKTNKERKKCQTIDEVIEYVEGWVERRPDLQYDIDGIVIKVDSLE 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG A+SPRW I++KF ++ T+L +I++ +GRTG++TP A LEPV + G + Sbjct: 292 LQEQLGTTAKSPRWAIAYKFPAEEVVTQLKEIELSVGRTGVVTPTAILEPVRVAGTTVQR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DI++GD V+VK+AG++IP+VV+++ R + F Sbjct: 352 ASLHNEDLIR-----------EKDIKIGDYVVVKKAGDIIPEVVNVLEERRTGGEKDFLM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 PEGCPECESGLVRLEGE------VALRCINPK-CPAQIREGLIHFVSRNAMNIDGLGEKV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + FK I ADI+ L+R Q + G+ SV NL ++I + SL Sbjct: 454 ISQLFKE----GLIEDVADIYRLERDQL------LQLERMGEKSVDNLLNAIEASKANSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E+ +F LGIRHVGA+ A++LA+ + L + +GD +A Sbjct: 504 EKLLFGLGIRHVGAKAAKTLAQEFGDIDTLMNASK----------DDLTAINEIGDKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 A+V +++ + + L + + + + S + +V TG ++++ R++ Sbjct: 554 AVVAYFEKEEAVELIGELRTAGVNTEYKGPKPVKAEEIDSYFAGRTVVLTGKMEQLGRNE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A++ + +LG V+ +S+KTD++I G+ GSKL KAQ+L ++I +EE LL + N Sbjct: 614 AKQKIEELGGKVTGSVSKKTDLLIAGEEAGSKLAKAQELDIEIWDEE---KLLGELN 667 >gi|145224827|ref|YP_001135505.1| NAD-dependent DNA ligase LigA [Mycobacterium gilvum PYR-GCK] gi|190359265|sp|A4TDZ8|DNLJ_MYCGI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145217313|gb|ABP46717.1| DNA ligase, NAD-dependent [Mycobacterium gilvum PYR-GCK] Length = 712 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 224/737 (30%), Positives = 350/737 (47%), Gaps = 54/737 (7%) Query: 1 MKKRQLIPIEALSIEQA--------RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALK 52 M + E++ EQA R+ L E+ H YY PII D+E+D L Sbjct: 1 MSPEAIPDPESMLAEQAHDALDPDLRRSWQELADEVREHQFRYYIRDAPIITDAEFDQLL 60 Query: 53 RRCDAIAHAFPDLARSEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFI 111 RR A+ +P+L P+ P +GG H LSL+ ++++E+L + Sbjct: 61 RRLQALEDEYPEL---RTPDSPTQLVGGAGFATDFTAAEHLERMLSLDNVFDLEELAAWA 117 Query: 112 TRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP 171 RI + E KIDG + + Y G+ AA RGDG +GEDV+ R I Sbjct: 118 ARIRTEIGADA----QYLCELKIDGVALALVYRDGRLERAATRGDGRTGEDVTLNARTIE 173 Query: 172 TIPRVLSLNIPE----IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL 227 IP LS ++EVRGEV+ DF LN ++A G+ P+ANPRN+A+G LR+ Sbjct: 174 DIPERLSGTNEFPLPTVVEVRGEVFFRVADFEDLNAGLVAEGKPPFANPRNSAAGSLRQK 233 Query: 228 NPT-DITRYLNFFVHGLGKTSEI---FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVS 283 NP R L HGLG ++ + ++ G PV++ Q + Sbjct: 234 NPAVTARRRLRMICHGLGHVESSGGSPFPTLHDAYRALKAWGLPVSDHTAQVTGLDAVTE 293 Query: 284 YYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDID 343 R + ++IDG+V KVD +LQ++LG +R+PRW +++K+ ++A TRLLDI Sbjct: 294 RIAYWGEHRHDVEHEIDGVVVKVDAVALQRRLGATSRAPRWAVAYKYPPEEAQTRLLDIR 353 Query: 344 IQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLV 403 + +GRTG +TP A +EPV + G+ + ATLHN +K + + +GD V++ Sbjct: 354 VNVGRTGRVTPFAYMEPVKVAGSTVGLATLHNASEVKR-----------KGVLIGDTVVI 402 Query: 404 KRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463 ++AG+VIP+V+ +V+ R + F FP+ CP C S + + A RC + Sbjct: 403 RKAGDVIPEVLGPVVDLRDGSEREFVFPTHCPECGSELA-----PAKEGDADIRCPNTRS 457 Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK 523 C AQ ER+ H R AF+IEGLG + + A I D+F L T Sbjct: 458 CPAQLRERVFHVAGRGAFDIEGLGYEAATALLQ----AGVIADEGDLFGLTADDLLRTEL 513 Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583 G + L ++ K + L R + +L IRHVG AR+LA + S + Sbjct: 514 FTTKAGELSANGKRLLANLGKAKAQPLWRVLVALSIRHVGPTAARALATEFGSLEAIETA 573 Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 L VG IA A+++++ + V+ + + ++ Sbjct: 574 SE----------EQLAGTEGVGPTIAAAVIDWFTVDWHRAIVDKWREAGVRMADERDASI 623 Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 +E +V TG+L R +A+E + G + +S+KT ++ GD PGSK +KA + Sbjct: 624 ERTLEGLSIVVTGSLAGFSRDEAKEAIIARGGKAAGSVSKKTAYVVAGDAPGSKYDKAIE 683 Query: 704 LGVKIMNEEQFLFLLQQ 720 LGV +++E+ F LL + Sbjct: 684 LGVPVLDEDGFRRLLAE 700 >gi|257791950|ref|YP_003182556.1| DNA ligase, NAD-dependent [Eggerthella lenta DSM 2243] gi|325829905|ref|ZP_08163363.1| DNA ligase (NAD+) [Eggerthella sp. HGA1] gi|257475847|gb|ACV56167.1| DNA ligase, NAD-dependent [Eggerthella lenta DSM 2243] gi|325488072|gb|EGC90509.1| DNA ligase (NAD+) [Eggerthella sp. HGA1] Length = 708 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 232/737 (31%), Positives = 369/737 (50%), Gaps = 53/737 (7%) Query: 1 MKKRQLIPIEALSIEQA----RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCD 56 M Q ++ ++ +A + +L +EI +H YY P I D+ +D+L R Sbjct: 1 MADEQQTLLDEQALAEATNDPAARIDALRREIEHHSYLYYANDAPEISDAAFDSLMRELR 60 Query: 57 AIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR 116 + A P+L DP+ P ++GG + V H+ SL+ ++++L +I R+ Sbjct: 61 ELEAAHPELI---DPSSPTQRVGGYVGEQFAPVRHARRMYSLDNAMDLDELDAWIERVTE 117 Query: 117 FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176 + + + E KIDG+ I + YE G+ + AA RGDG +GEDV+A +R + +P Sbjct: 118 AFGRM----VPVVCELKIDGSSIALTYEDGRLMRAATRGDGTTGEDVTANMRTVKDVPLR 173 Query: 177 LSL-------NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP 229 L + +E+RGEVY+ K+ F ALN + G++ +ANPRNAA+G LR+ +P Sbjct: 174 LRQGALGGLRDADAPVELRGEVYMPKSSFDALNVAAVENGKQAFANPRNAAAGSLRQKDP 233 Query: 230 T-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM 288 + R L+ F++ + + A+GQ+E+L +R GF VN V T + ++ Sbjct: 234 SITANRDLSTFIYAVADERALNAEGQWELLAWLREAGFHVNPDVELCQTREEVHAFCERA 293 Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348 + R LPY+IDG+V KV+ F+ Q+ +G AR+PRW ++ KF ++ +T L DI +Q+GR Sbjct: 294 VARREDLPYEIDGVVVKVNSFAQQESMGYTARAPRWAVAFKFPPEEKTTLLRDITVQVGR 353 Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408 TG LTPVA L+PV + G+ + ATLHNED ++ +D+RVGD V+V++AG+ Sbjct: 354 TGKLTPVAELDPVVVAGSTVARATLHNEDEVQR-----------KDVRVGDTVIVRKAGD 402 Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 VIP+V+ ++ R DA + P CP C S V+R+ RC + C AQ Sbjct: 403 VIPEVLGPVLALRPADAVQWEMPRTCPSCGSPVIREEGE------VDFRCIS-IDCPAQA 455 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA-DIFTLQRRQQTSTTKIENI 527 LERL H+ SR A +I+G+G++ + +S + D L K Sbjct: 456 LERLLHWASRGAMDIDGMGEEIVSRLVESGRLSDVADYYTLDEVELSLLDMGRVNKDGEP 515 Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587 + G L +I++ R R +F LGIRHVG IA LA Y S + + Sbjct: 516 IRLGSTVAKKLVAAIDESRTRPFARALFGLGIRHVGKTIAELLAAAYPSIEALMEASE-- 573 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE---KNVS 644 L + VG IA++ F + P N +E L + + Sbjct: 574 --------EDLAVIDGVGPKIARSAYLFLRTPDNAAVIERLRSHGVALADEAADAGEQLP 625 Query: 645 SEIENKKLVFTGTL--QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702 + V TG+L + R +A + GA VS +S+KT ++ G+ GSK +KA Sbjct: 626 QTLAGLTFVLTGSLVESGMTRDEAGAVLKARGAKVSGSVSKKTSFVVAGEAAGSKYDKAV 685 Query: 703 QLGVKIMNEEQFLFLLQ 719 L V +++E L +L+ Sbjct: 686 ALSVPVLDEAALLRILE 702 >gi|311029281|ref|ZP_07707371.1| NAD-dependent DNA ligase LigA [Bacillus sp. m3-13] Length = 668 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 247/714 (34%), Positives = 387/714 (54%), Gaps = 53/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + EQA K + L ++ ++ Y+ KP + D+EYD+L + + P+L + Sbjct: 1 MEREQAEKRVRELHDVLNQYNYEYHVLDKPSVSDAEYDSLLQELLTLEKEHPEL---QTE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KV H P LSL +N +DLR F R+ + + + + E Sbjct: 58 DSPTQRVGGNILEMFNKVEHRTPMLSLGNAFNEDDLRDFDRRVKQAVG----DDVTYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG +GED++ ++ I +IP L + +EVRGE Sbjct: 114 LKIDGLAVSLRYEDGLFVLGATRGDGTTGEDITMNLKTIKSIPLRLKEPV--TMEVRGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ KN F LN + +P+ANPRNAA+G LR+L+P +R L+ +V+ L E Sbjct: 172 YMPKNSFEKLNAAKMEREEEPFANPRNAAAGSLRQLDPKIAASRNLSVYVYSLADAGEAG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N + + ++ Y + R L YDIDG+V KVD Sbjct: 232 VDSHSEALDYLDKLGFKTNTERKVCTSIEEVLEYVTAWHTKRPDLSYDIDGIVIKVDNTE 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG A+SPRW I++KF ++ +T+LLDI++ IGRTG++TP A LEPV + G + Sbjct: 292 HQEQLGFTAKSPRWAIAYKFPAEEVTTKLLDIELNIGRTGVVTPTAILEPVRVAGTTVQR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DI++GD V+VK+AG++IP+VV+++V++R + + F+ Sbjct: 352 ASLHNEDLIR-----------EKDIKLGDTVIVKKAGDIIPEVVNVLVDQRTGEERDFTM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 PTHCPECESELVRIEGE------VALRCINPK-CPAQIREGLIHFVSRNAMNIDGLGEKV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ I AD++ L + Q + G+ S NL +I K ++ SL Sbjct: 454 IAQLFREN----LIEDVADLYKLTKEQL------LELERMGEKSADNLISAIEKTKDNSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIR VGA+ A++LA+ + A+ L + +GD +A Sbjct: 504 ERLLFGLGIRLVGAKAAKTLAQEFDHMDQLARLTK----------EELTAIHEIGDKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 +IV +++ P + L + + ++V S K +V TG L+++ R+ Sbjct: 554 SIVTYFEQPEVEELLAELKELGVNMAYKGPKPVSAEDVDSYFAGKTIVLTGKLEEMSRND 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+ + QLG V+ +S+ T ++I G+ GSKL KAQ+LG+++ NE Q L +Q Sbjct: 614 AKAAIEQLGGKVTGSVSKNTHLVIAGEEAGSKLTKAQELGIEVWNEAQMLKEIQ 667 >gi|312140511|ref|YP_004007847.1| DNA ligase (nad+) liga [Rhodococcus equi 103S] gi|311889850|emb|CBH49167.1| DNA ligase (NAD+) LigA [Rhodococcus equi 103S] Length = 712 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 225/717 (31%), Positives = 352/717 (49%), Gaps = 45/717 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + R+ L + + H YY PI+ D E+D L +A+ PDL P+ P Sbjct: 23 AEDRERWQELAEVVRNHQFRYYVLDSPIVSDGEFDQLFGELNALEERHPDL---RTPDSP 79 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-------YRFWQKKDDNSIF 127 +GG V H LSL+ +++ ++LR +I RI + Sbjct: 80 TQLVGGGFATEFKAVDHLERMLSLDNVFDYDELRTWIGRIEAEVSDGRSAGSAAAHPDLH 139 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPE 183 + E KIDG + + YE G+ V AA RGDG +GEDV+ R I IP L+ IP Sbjct: 140 YLCEVKIDGVALNLVYENGRLVRAATRGDGRTGEDVTLNARTISDIPETLTPSDEYPIPA 199 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 ++EVRGEV+ DF ALN ++A G+ P+ANPRN+A+G LR+ NP R L HG Sbjct: 200 LLEVRGEVFFRLEDFAALNASLVADGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHG 259 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 LG+T GQY+ + G PV+ + +V R + ++IDGL Sbjct: 260 LGRTEGFDPAGQYDAYTALAAWGLPVSTHTSRVVGADAVVEKVKYWDEHRHDVEHEIDGL 319 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KVDE SL ++LG +R+PRW +++K+ ++A+T+L+DI + +GRTG +TP A +EPV Sbjct: 320 VVKVDEMSLHRRLGATSRAPRWAVAYKYPPEEATTKLVDIRVSVGRTGRVTPFAYMEPVL 379 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G+ + ATLHN +K + + +GD V++++AGEVIP+V+ +V+ R Sbjct: 380 VAGSTVALATLHNASEVKR-----------KGVLIGDTVVIRKAGEVIPEVLGPVVDVRD 428 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 + F P+ CP C + + + A RC +C AQ ER+ H R AF+ Sbjct: 429 GSEREFVMPTECPECGTTLA-----PAKEGDADIRCPNQRSCPAQLRERVFHVAGRGAFD 483 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IE LG + + A I D+F+L G + L D++ Sbjct: 484 IEVLGYEAATALLQ----AGVISDEGDLFSLTEDDLLEAPLFRTKAGKLSANGRRLLDNL 539 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + L R + +L IRHVG AR+LA + S + L V Sbjct: 540 GSAKQQPLWRVLVALSIRHVGPTAARALASEFGSLERIENA----------GVEELAAVD 589 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 VG IA A+V +++ + V +++++ +E +V TG+L+ Sbjct: 590 GVGGTIAAAVVAWFEVDWHRDIVAKWRAAGVTMEDERDESIARNLEGLSIVVTGSLEGFS 649 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +A+E + G + +S+KT +++G+ PGSK KA++LGV I++E+ F LL+ Sbjct: 650 RDEAKEAILVRGGKAAGSVSKKTAFVVIGEAPGSKAAKAEELGVPILDEDGFRRLLE 706 >gi|269216606|ref|ZP_06160460.1| DNA ligase, NAD-dependent [Slackia exigua ATCC 700122] gi|269130135|gb|EEZ61217.1| DNA ligase, NAD-dependent [Slackia exigua ATCC 700122] Length = 709 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 237/723 (32%), Positives = 370/723 (51%), Gaps = 48/723 (6%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 +AL + R + +L +EI +H YY P I D+ +D+L R + A P+L Sbjct: 12 QALDADGTRARVRALRKEIEHHTYLYYAKDAPEISDAAFDSLMRELRELEQAHPELI--- 68 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 DP P ++GG + V H++ SL+ +E+L +++ R + + F Sbjct: 69 DPTSPTQRVGGYVGEQFSPVRHAVRMYSLDNAMGLEELDEWLARTVEAIG----HPVPFC 124 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-------NIP 182 E KIDG+ I + YE G AA RGDG +GEDV+ +R + IP L + Sbjct: 125 CELKIDGSSIALTYEAGVLTKAATRGDGTTGEDVTVNMRTVRDIPLRLRDAGIEGLVDPD 184 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVH 241 IEVRGEVY+ K F +LN A GR+ +ANPRNAA+G LR+ +PT R L+ F++ Sbjct: 185 ASIEVRGEVYMPKRSFESLNAAAAAQGRQGFANPRNAAAGSLRQKDPTVTQGRDLSTFLY 244 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 + + + A+ Q+++L+ + GF VN V++ +T + + E+ R +LPY IDG Sbjct: 245 AIADDAPVRAESQWDLLKWLGDCGFHVNPDVKRCDTPEEVHRFCEEVADRRDSLPYGIDG 304 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V KVD F++Q+++G AR+PRW I++KF ++ +T L DI +Q+GRTG +TPVA L+PV Sbjct: 305 VVVKVDSFAIQREMGFTARAPRWAIAYKFPPEEKTTVLRDISVQVGRTGAITPVAELDPV 364 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G+++ ATLHN D + +D+RVGD ++V++AG+VIP+V+ +++ R Sbjct: 365 RVDGSVVARATLHNLDEVHR-----------KDVRVGDTIIVRKAGDVIPEVLGPVLSLR 413 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 A P+ P+ CP C S +VR+ AA RC + C AQ ERL H+ SR A Sbjct: 414 PEGAIPWEMPAMCPSCGSPLVREDGE------AAFRCVS-IDCPAQATERLIHWASRGAM 466 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPA-DIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +I+G+G++ + +S + + L + T K + G L Sbjct: 467 DIDGMGEEIVARLVESGRLTDVADYYSLSEYDLATLETGRTNKEGEPVHLGSTIAAKLIA 526 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 SI + R +F LGIRHVG +A Y S + L Sbjct: 527 SIEASKARPFGRVLFGLGIRHVGKTTGAQIAAAYPSMDALMRASE----------EDLAA 576 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTL 658 + VG IIA++I F + P N + L ++V + V TG+L Sbjct: 577 IDGVGGIIAKSIRAFLETPDNREVIHRLGVLGVRMEDVRTEGEDVPQTLAGITFVLTGSL 636 Query: 659 --QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + R +A + +GA VS +S+KT +I G+ GSK +KA LGV +++E L Sbjct: 637 VESGMTRDEAGSRLKAMGAKVSGSVSKKTGYVIAGEAAGSKYDKAVALGVPVLSEADLLR 696 Query: 717 LLQ 719 LL+ Sbjct: 697 LLE 699 >gi|257060505|ref|YP_003138393.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 8802] gi|256590671|gb|ACV01558.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 8802] Length = 674 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 223/696 (32%), Positives = 365/696 (52%), Gaps = 51/696 (7%) Query: 30 YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89 + YY PI+ DS YD L R + +P L P+ P ++G + + Sbjct: 21 KANYAYYVLDNPIMEDSVYDQLYRELQDLESQYPILI---TPDSPTQRVGDQPAAQFNSI 77 Query: 90 THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149 H+IP SLE +N+++L+K+ R R+ Q + + + E KIDG+ + + YE G + Sbjct: 78 RHNIPLYSLENAFNLQELQKWEERWQRYDQVSNSD---YVCELKIDGSALALTYENGILI 134 Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDFLALNDEMIAV 208 RGDG +GE+++ +R I +IP L+ N P +E+RGE ++ N+F LN E Sbjct: 135 RGVTRGDGITGEEITQNVRTIRSIPLKLTLENPPSRVEIRGEAFLPLNEFDRLNGERKQA 194 Query: 209 GRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFP 267 G +ANPRNAA+G LR+L+ + R L FF + L + Q+E L+ ++ +GF Sbjct: 195 GEPLFANPRNAAAGTLRQLDSKVVSERRLQFFAYTLHLPEDNSLSSQWESLEWLKKMGFL 254 Query: 268 VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327 VN + T + Y+ ++ R LPY DG+V K+++++LQ QLG + PRW I+ Sbjct: 255 VNPNCQLCPTLEAVADYFCHWETTRHDLPYMTDGVVVKINDYALQNQLGFTQKFPRWAIA 314 Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387 K+ ++A TR+ +I + +GRTG +TP+A +EPV++GG ++ ATLHN D + L Sbjct: 315 LKYPAEEAPTRVKEIIVNVGRTGAVTPMAIMEPVHLGGTIVQRATLHNRDRVSEL----- 369 Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447 DIRVGD V++++AGE+IP+V+ ++ R P++QP+ PS CP C S +VR + Sbjct: 370 ------DIRVGDTVIIRKAGEIIPEVLRVLPELRLPNSQPYQMPSHCPECGSTLVRPVGE 423 Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507 A RC +C A + H+ SRDA +I GLG++ + ++ I Sbjct: 424 ------AVTRCVNS-SCPAILRGSVVHWASRDALDIRGLGEKIVSLLVEN----GLITSI 472 Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567 D++ L K+ + G S L ++I ++ S R ++ LGIR+VG A Sbjct: 473 TDLYQLTPE------KVAALDRMGTKSAQKLINAIEGSKHQSWSRVLYGLGIRYVGNVTA 526 Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 + L + S + +Q +L V VG+ IAQ++ ++++ N +E Sbjct: 527 KLLTDNFPSVEVLSQA----------SVPTLASVYGVGEEIAQSVFDWFKIAENQTLIEQ 576 Query: 628 LLKEVSPSIGRHEKNVS-----SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 L + VS ++ K V TGTL ++R++A+ + + G V+ +S Sbjct: 577 LKIAGLQLENIASQAVSLTAASEKVAGKTFVLTGTLPTLKRNEAKALIEKAGGKVTGSIS 636 Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 KTD ++VG+ GSKL KAQ+LG+ ++E L L Sbjct: 637 SKTDYLVVGEEAGSKLAKAQELGITQLSEADLLKFL 672 >gi|268323600|emb|CBH37188.1| DNA ligase [uncultured archaeon] Length = 667 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 234/701 (33%), Positives = 389/701 (55%), Gaps = 49/701 (6%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 ++ L ++I YH+ YY +P I D+EYD L + + +P+L P+ P +IG Sbjct: 14 IAQLREKIHYHNYRYYVLDEPEISDAEYDRLFVELEELERKYPELI---TPDSPTQRIGA 70 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + H IP LSL + +R F R+ R + I + +EPKIDG + Sbjct: 71 KPVAEFGTYKHRIPMLSLNSVNTEVAVRDFDERVRRMLGVE---EIEYVVEPKIDGLAME 127 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + YE G F+ + RGDG +GE+++ ++ + T+P + ++EVRGEV++ + F Sbjct: 128 LVYENGVFIVGSTRGDGKTGENITQNLKTVKTLPLRILSETAPLLEVRGEVFMPVSKFKE 187 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259 LND + A G + +ANPRNAA+G +R+L+ +R L+FF +G+G+T Q+E+L Sbjct: 188 LNDLLGAKGDRMFANPRNAAAGSVRQLDSRVTASRPLDFFAYGIGRTEGKTFSTQWEVLM 247 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 + +GF V+ +R+ F ++ Y++E+K R L Y+IDG+V KV+ Q++LG + Sbjct: 248 YLHKIGFKVSPLIRRFKVFEDVIKYHDEVKEKRDELDYEIDGIVVKVNGIEQQERLGLIS 307 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 RSPRW I++KF ++ T + DI +Q+GRTG LTPVA L PV I G ++ ATLHNE+ + Sbjct: 308 RSPRWAIAYKFPAREEFTTVNDIVVQVGRTGALTPVAILAPVQISGVTVSRATLHNENEL 367 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439 + +D+R+GD V+V+RAG+VIP+VV +I ++R + F P CPIC + Sbjct: 368 RR-----------KDVRIGDTVVVERAGDVIPEVVSVIKSKRTGAEKEFRMPGRCPICGA 416 Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 V+++ RC G +CSAQ E +KHF S A NI+GLG++ + + Sbjct: 417 DVLKE--------GPIVRCIGV-SCSAQLKEWIKHFASLRAMNIDGLGEKVIAQLCDRK- 466 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559 + AD+F L +R ++ + GD S N+ +++ K ++ +L R I++LGI Sbjct: 467 ---MVSDAADLFFLTKR------ELLKLDRMGDKSARNILNALEKSKHTTLSRLIYALGI 517 Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 RHVGA A LA + ++ + L+ +P +G +A++I+ F++ Sbjct: 518 RHVGAHTASLLADNFSELESLRNA----------SYDDLVHIPEIGPEVAKSIILFFKQG 567 Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 + L + + + + +E K VFTG + + R +A+ V +LG V++ Sbjct: 568 GTKDLLGKLERAGVW-YEKKKAAAEARLEGKTFVFTGRIS-MPREEAKSLVERLGGKVAS 625 Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +S+KTD ++ G+ GSK EKA++LGVKI+ E +F +++ Sbjct: 626 SVSKKTDYVVAGEEAGSKREKAEKLGVKIIGESEFGEIIRD 666 >gi|167752039|ref|ZP_02424166.1| hypothetical protein ALIPUT_00281 [Alistipes putredinis DSM 17216] gi|167660280|gb|EDS04410.1| hypothetical protein ALIPUT_00281 [Alistipes putredinis DSM 17216] Length = 712 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 223/709 (31%), Positives = 352/709 (49%), Gaps = 47/709 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 R+++ L + + YH+ YY + P I D E+D L R + A P+ A DPN P Sbjct: 12 IREKIEELRRTLDYHNHKYYVENSPEISDREFDVLMRELQELEAAHPEYA---DPNSPTA 68 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G ++ V H P LSL +++++L +FI RI + F E K DG Sbjct: 69 RVGSDLTTEFQSVEHRFPMLSLGNTYSLDELHEFIGRIEKELG-----QTEFVCELKFDG 123 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195 T I++ YE G + A RGDG G+DV+A IR I TIP L + P+ E+RGEV + Sbjct: 124 TAISLTYEHGALLRAVTRGDGTRGDDVTANIRTIRTIPLHLQGGDYPDFFEIRGEVLMPY 183 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 F LN E G ANPRNAA+G L++ + + + ++ + Sbjct: 184 ASFDRLNREREENGEPLLANPRNAAAGTLKQQSSAVVAQRGLDCTLYQLAGDDLPCTTHW 243 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E ++K GF V++ +R + I Y R LP+ DG+V KV+ ++L+++L Sbjct: 244 ECMRKASEWGFNVSDKMRICRSQAEIDDYIAFWDEERRKLPFATDGVVIKVNSYTLRREL 303 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A++PRW ++ KF +QA TRL +D Q+GRTG +TPVA L+PV + G + ATLHN Sbjct: 304 GFTAKAPRWAVAFKFKAEQALTRLESVDFQVGRTGAITPVANLDPVQLAGTTVKRATLHN 363 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 + I L DIRVGD V V++ GE+IPK+ + + R D++PF + + CP Sbjct: 364 AEQIALL-----------DIRVGDMVYVEKGGEIIPKITGVDLAARPADSRPFQYITRCP 412 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + +V+ H C C Q L R+ HF+ R A +IEGLG++ ++ F Sbjct: 413 ECGTPLVKYEGESK------HYCPNQSHCRPQILGRIIHFIRRKAMDIEGLGEETVELLF 466 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 ++ + AD++ L+ Q + G+ S N+ SI + +R +F Sbjct: 467 EN----GLLHDIADLYDLRAEQL------ACLPRLGEKSAENIIRSIRGSVEVPFQRVLF 516 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG A+ LA ++ + LI VG IA AI+++ Sbjct: 517 ALGIRFVGETTAKYLAAHFRTLDAVMHATR----------EELIEADEVGGKIADAIIDY 566 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + + N+ +E L K + H+ S + K V TG R + +E + G Sbjct: 567 FADAENLRIIERLRKAGLQTEAAHKALESESLAGKNFVITGRFSGHSRDELKELIEAHGG 626 Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 A +S D ++ G+ G +KL+KA +LGV++++EE+ L ++ T Sbjct: 627 KNLAAVSANVDFLVAGEKIGPAKLQKATKLGVRLISEEELLAMIASGGT 675 >gi|255021565|ref|ZP_05293608.1| DNA ligase [Acidithiobacillus caldus ATCC 51756] gi|254968953|gb|EET26472.1| DNA ligase [Acidithiobacillus caldus ATCC 51756] Length = 659 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 244/701 (34%), Positives = 383/701 (54%), Gaps = 45/701 (6%) Query: 27 EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86 + + YY+ P++ D+EYDAL R A+ A P+L + + P ++G + Sbjct: 2 LLEAANRAYYRDDAPVMSDAEYDALLRELRALEDAHPELRVA---DSPTQRVGAAPVSAF 58 Query: 87 FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146 V + IP SL+ +++ E+ R + R+ R + + + + EPK DG + +RYE G Sbjct: 59 GAVHYRIPMTSLDNVFSEEEFRDWWERLRRALPEVSNPVL--SGEPKFDGLSVNLRYEGG 116 Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEM 205 + V A RGDG GEDV+ +R I +P L + PE+IE+RGEV + F LN E Sbjct: 117 RLVRAGTRGDGVEGEDVTHNVRTIHNVPLQLQGSGWPELIELRGEVVLPVAAFRRLNRER 176 Query: 206 IAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264 G P+ANPRNAA+G LR+L+P R L FF G G+ SE +LQ+ Sbjct: 177 ERRGEAPFANPRNAAAGSLRQLDPRITARRPLAFFPWGFGECSEPLGDSHVHILQRFATW 236 Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 GF V +R + ++Y+ ++ + R ++P++IDGLV+KVD+ +L+++LG AR+PRW Sbjct: 237 GFSVTEFLRPIHGLDEALAYHADLAARRESMPFEIDGLVFKVDDLALRERLGFTARAPRW 296 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384 I+ KF +AST + DI +GRTG++TPVA+L+PV++ G +++ A+LHNED ++ Sbjct: 297 AIAWKFPAHEASTLVEDIVASVGRTGVVTPVAQLQPVSVAGVMVSRASLHNEDEVRR--- 353 Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444 +D+RVGD VLV+RAG+VIP++V ++ + R +QP+ P+ CP+C S ++R Sbjct: 354 --------KDVRVGDTVLVRRAGDVIPEIVTVLRDRRPAASQPWRMPTRCPVCGSEILRL 405 Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504 N AHRCTGGL C AQ++ + HF SR A +I GLG++ + + Sbjct: 406 PNE------VAHRCTGGLYCPAQRMGAILHFASRRAMDIRGLGEKLVAQLVAQ----GLV 455 Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564 + AD++ L R + + GD S L D I R RF+++LGI VG Sbjct: 456 KTVADLYHLDRD------TLLALPRMGDRSAQKLLDEIAGSRQTEFARFLYALGIHQVGE 509 Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 A++LA+++ + L VP VG ++A+AI+ F+ N Sbjct: 510 STAKALAQHFGDLETLMA----------VSAEDLQEVPDVGPVVAEAILHFFAQTHNREV 559 Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684 ++ALL + K ++ K+LV TG+L + R A+E + G V + +S + Sbjct: 560 IQALLAAGV-HWPKVRKREGGVLQGKRLVLTGSLPHLSREAAKEKIEAAGGKVVSAVSAQ 618 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 D +IVG+ PGSKL KAQ LG+ ++E FL LL + + Sbjct: 619 VDYVIVGEAPGSKLAKAQALGIPQLDEAAFLALLAEGGEDV 659 >gi|264678823|ref|YP_003278730.1| DNA ligase, NAD-dependent [Comamonas testosteroni CNB-2] gi|262209336|gb|ACY33434.1| DNA ligase, NAD-dependent [Comamonas testosteroni CNB-2] Length = 708 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 254/728 (34%), Positives = 386/728 (53%), Gaps = 52/728 (7%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 ++ I A E ++++L ++ YY P + D EYD + ++ +A+ A+ Sbjct: 15 QKPSTAINAGVPESVTSKVAALRAQLHQWAHEYYVLDTPTVPDGEYDRVYQQLEALEGAY 74 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQK 120 P L P+ P ++ G + L V H++P LS++ + E F R+ + Sbjct: 75 PALV---TPDSPTQRVIGAVLDGLTPVRHAVPMLSIQTETDNEATGAIAFDQRVRKELGL 131 Query: 121 KDDNS-IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179 + + I + EPK DG + +RYE G+ V A RGDG GEDV+ IR I IP LS Sbjct: 132 DESAAAIEYVAEPKFDGLAMNLRYENGRLVQATTRGDGEVGEDVTHNIRTIRQIPLTLSA 191 Query: 180 NI--PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYL 236 P ++EVRGEV+++K D LN A G K +ANPRNAA+G +R+L+ R L Sbjct: 192 GRDVPPVVEVRGEVHMAKADLDKLNARQQAAGAKTFANPRNAAAGSVRQLDSNIAAQRPL 251 Query: 237 NFFVHGLGKTSEIF-----AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 +FF +GLG+ + Y MLQ ++ GFPV V A +V+++ + + Sbjct: 252 SFFAYGLGEITPPQQGGPDFGTHYAMLQTLKSWGFPVAPQVSIALGASELVAFHERIGAE 311 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R+ LPY+IDG+VYKV+ +LQ+QLG ++R PRW ++HK+ ++ T + ID+Q+GRTG Sbjct: 312 RANLPYEIDGVVYKVNSLALQRQLGFKSREPRWAVAHKYPAQEMPTLMEAIDVQVGRTGK 371 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 LTPVARL PV +GG ++TNATL N I+ + +RVGD+V+V+RAG+VIP Sbjct: 372 LTPVARLAPVQVGGVVVTNATLSNLFDIRK-----------KGVRVGDQVIVRRAGDVIP 420 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV + ER F P CPIC S VVR+ A HRCTGGL C AQ+ E Sbjct: 421 EVVGRVPGERPAYVPNFRMPKTCPICGSEVVREKGE------ANHRCTGGLFCGAQRKEA 474 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 + HF R A +IEGLG + +D ++ +R+ D++ L + + + Sbjct: 475 ILHFAHRRAMDIEGLGDKLVDQLVDAQ----VVRVLPDLYRL------GLSSLAALDRMA 524 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S N+ ++ K ++ +L+RF+F LGIR+VG AR LAK++ Sbjct: 525 EKSAQNVLAALEKSKSTTLQRFLFGLGIRNVGESTARDLAKHFGKLDAIMDA-------- 576 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENK 650 L++V VG ++A +I F+ P N VE L G + + Sbjct: 577 --SVEELLQVKDVGPVVADSIHTFFAQPHNREVVEQLRACGVHWEEGEPAEKAPQILAGL 634 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TGTL + R A++ + GA VS +S+KT ++ G GSKL KA++LGV +++ Sbjct: 635 TVVLTGTLPTLGRDAAKDMLEAAGAKVSGSVSKKTSYVVAGAEAGSKLAKAEELGVPVLD 694 Query: 711 EEQFLFLL 718 E L LL Sbjct: 695 EAGMLALL 702 >gi|299529801|ref|ZP_07043234.1| DNA ligase, NAD-dependent [Comamonas testosteroni S44] gi|298722215|gb|EFI63139.1| DNA ligase, NAD-dependent [Comamonas testosteroni S44] Length = 708 Score = 535 bits (1378), Expect = e-149, Method: Composition-based stats. Identities = 254/728 (34%), Positives = 386/728 (53%), Gaps = 52/728 (7%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 ++ I A E ++++L ++ YY P + D EYD + ++ +A+ A+ Sbjct: 15 QKPSTAINAGVPESVTSKVAALRAQLHQWAHEYYVLDTPTVPDGEYDRVYQQLEALEGAY 74 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQK 120 P L P+ P ++ G + L V H++P LS++ + E F R+ + Sbjct: 75 PALV---TPDSPTQRVIGAVLDGLTPVRHAVPMLSIQTETDNEATGAIAFDQRVRKELGL 131 Query: 121 KDDNS-IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179 + + I + EPK DG + +RYE G+ V A RGDG GEDV+ IR I IP LS Sbjct: 132 DESAAAIEYVAEPKFDGLAMNLRYENGRLVQATTRGDGEVGEDVTHNIRTIRQIPLTLSA 191 Query: 180 NI--PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYL 236 P ++EVRGEV+++K D LN A G K +ANPRNAA+G +R+L+ R L Sbjct: 192 GRDVPPVVEVRGEVHMAKADLDKLNARQQAAGAKTFANPRNAAAGSVRQLDSNIAAQRPL 251 Query: 237 NFFVHGLGKTSEI-----FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 +FF +GLG+ + Y MLQ ++ GFPV V A +V+++ + + Sbjct: 252 SFFAYGLGEITPPEQGGPDFGTHYAMLQTLKSWGFPVAPQVSIALGASELVAFHERIGAE 311 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R+ LPY+IDG+VYKV+ +LQ+QLG ++R PRW ++HK+ ++ T + ID+Q+GRTG Sbjct: 312 RANLPYEIDGVVYKVNSLALQRQLGFKSREPRWAVAHKYPAQEMPTLMEAIDVQVGRTGK 371 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 LTPVARL PV +GG ++TNATL N I+ + +RVGD+V+V+RAG+VIP Sbjct: 372 LTPVARLAPVQVGGVVVTNATLSNLFDIRK-----------KGVRVGDQVIVRRAGDVIP 420 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV + ER F P CPIC S VVR+ A HRCTGGL C AQ+ E Sbjct: 421 EVVGRVPGERPAYVPNFRMPKTCPICGSEVVREKGE------ANHRCTGGLFCGAQRKEA 474 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 + HF R A +IEGLG + +D ++ +R+ D++ L + + + Sbjct: 475 ILHFAHRRAMDIEGLGDKLVDQLVDAQ----VVRVLPDLYRL------GLSSLAALDRMA 524 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S N+ ++ K ++ +L+RF+F LGIR+VG AR LAK++ Sbjct: 525 EKSAQNVLAALEKSKSTTLQRFLFGLGIRNVGESTARDLAKHFGKLDAIMDA-------- 576 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENK 650 L++V VG ++A +I F+ P N VE L G + + Sbjct: 577 --SVEELLQVKDVGPVVADSIHTFFAQPHNREVVEQLRACGVHWEEGEPAEKAPQILAGL 634 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TGTL + R A++ + GA VS +S+KT ++ G GSKL KA++LGV +++ Sbjct: 635 TVVLTGTLPTLGRDAAKDMLEAAGAKVSGSVSKKTSYVVAGAEAGSKLAKAEELGVPVLD 694 Query: 711 EEQFLFLL 718 E L LL Sbjct: 695 EAGMLALL 702 >gi|326381521|ref|ZP_08203215.1| NAD-dependent DNA ligase LigA [Gordonia neofelifaecis NRRL B-59395] gi|326199768|gb|EGD56948.1| NAD-dependent DNA ligase LigA [Gordonia neofelifaecis NRRL B-59395] Length = 692 Score = 535 bits (1378), Expect = e-149, Method: Composition-based stats. Identities = 215/718 (29%), Positives = 348/718 (48%), Gaps = 41/718 (5%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +E + L +E+ H YY P+I D E+D L RR A+ P+LA + + P Sbjct: 12 AREWALLAEEVRGHQFRYYVQDAPVISDGEFDTLLRRLQALEDEHPELAVA---DSPTKL 68 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + V H +SL+ +++ +++R +++R F E KIDG Sbjct: 69 VGGGFSTDFTSVDHLERMMSLDNVFDHDEMRTWVSRTEAEIG----AGTEFLCELKIDGV 124 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGEVYIS 194 + + YE GK V RGDG +GEDV+ R I +P VL +P ++EVRGEV+ Sbjct: 125 ALALVYENGKLVRGVTRGDGRTGEDVTLNARTITDVPHVLDDAVRPVPALLEVRGEVFFR 184 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 DF LN ++ G+ P+ANPRN+A+G LR+ NP R+L HG+GK + Sbjct: 185 VEDFQNLNASLVEDGKAPFANPRNSAAGSLRQKNPQITAKRHLRMICHGIGKIEGWRPES 244 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ + G PV+ R+ IV + R ++ ++IDGLV KVD+ S Q+ Sbjct: 245 LHDAYLALGEWGLPVSKHTRKVTGAGEIVKTIDYWGENRHSVEHEIDGLVVKVDDVSQQR 304 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG +R+PRW I++K+ ++ +T+LLDI + +GRTG +TP A +EPV + G+ + ATL Sbjct: 305 RLGATSRAPRWAIAYKYPPEEVTTKLLDIMVGVGRTGRVTPWALMEPVLVAGSTVARATL 364 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN +K + + +GD + +++AG+VIP+V+ +V R + F P+ Sbjct: 365 HNAFEVKR-----------KGVLIGDTITIRKAGDVIPEVLGPVVELRDGTEREFVMPTN 413 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C + + + RC +C Q ERL + R AF+IE LG + Sbjct: 414 CPECGTELA-----PAKEGDKDIRCPNQRSCPGQLRERLFYLAGRGAFDIEALGYEGAQA 468 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 S + D+F+L T G + D+++K +++ L R Sbjct: 469 LLSS----GVLADEGDLFSLTADDLIKTDLYTTKAGALSANGKRFLDNLDKAKHVPLWRV 524 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I +L IRHVG AR+LA + + L +V +G A ++ Sbjct: 525 IVALSIRHVGPTPARALATAFGDLEAIQAA----------SVEDLAQVDGLGPTRAASVH 574 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +++ + V + ++ +E K +V TG+L R A+E + Sbjct: 575 DWFAVDWHREIVAKWRAAGVSMADERDDSIERTLEGKTIVVTGSLVDFSRDGAKEAIISR 634 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731 G S +S+KTD ++VG+ GSK +KA+QLGV I++E+ F LL +D Sbjct: 635 GGKASGSVSKKTDYVVVGEAAGSKADKAEQLGVPILDEDGFKELLATGAVAGATPTED 692 >gi|47092911|ref|ZP_00230693.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 4b H7858] gi|254825997|ref|ZP_05230998.1| DNA ligase [Listeria monocytogenes FSL J1-194] gi|254853668|ref|ZP_05243016.1| DNA ligase [Listeria monocytogenes FSL R2-503] gi|254932796|ref|ZP_05266155.1| DNA ligase [Listeria monocytogenes HPB2262] gi|300765954|ref|ZP_07075926.1| DNA ligase, NAD-dependent [Listeria monocytogenes FSL N1-017] gi|47018737|gb|EAL09488.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 4b H7858] gi|258607047|gb|EEW19655.1| DNA ligase [Listeria monocytogenes FSL R2-503] gi|293584349|gb|EFF96381.1| DNA ligase [Listeria monocytogenes HPB2262] gi|293595236|gb|EFG02997.1| DNA ligase [Listeria monocytogenes FSL J1-194] gi|300513340|gb|EFK40415.1| DNA ligase, NAD-dependent [Listeria monocytogenes FSL N1-017] gi|328466510|gb|EGF37653.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 1816] gi|328473899|gb|EGF44721.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 220] gi|332312198|gb|EGJ25293.1| DNA ligase [Listeria monocytogenes str. Scott A] Length = 671 Score = 535 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 246/711 (34%), Positives = 367/711 (51%), Gaps = 53/711 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K L + + YY P + D+EYD + I A P+ P P + Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ KV H P LSL +N EDL F RI K + I + E KIDG Sbjct: 61 VGGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRIRD----KVGDDIAYMCELKIDGL 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 ++++YE GK+ A RGDG GED++A +R I +IP L + IEVRGE ++ K Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 174 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+ G+ +ANPRNAA+G LR+L+ +R L+ F++ + E+ + Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R N+ + +Y E R+ L YDIDG+V K++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 NTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D + +DIR+GD VL+K+AG++IP+V+ I +R +PF P CP Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSEEPFHMPKNCPA 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CDSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L + K+ + G+ SVTNL SI + SLE+ +F Sbjct: 457 Q----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIQASKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N D +L + +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNL----------KVADKETLTSINDIGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 N +E L + K K +V TG L+K+ R+ A+ + Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667 >gi|260063119|ref|YP_003196199.1| DNA ligase [Robiginitalea biformata HTCC2501] gi|88784688|gb|EAR15858.1| DNA ligase [Robiginitalea biformata HTCC2501] Length = 673 Score = 535 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 223/714 (31%), Positives = 356/714 (49%), Gaps = 46/714 (6%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E ++ +++ +L E+ H+ YY +P+I D ++D + + P+ Sbjct: 3 EKVNKRDIAEKIQALRDELRDHNYRYYVLDEPVISDYDFDMKLKALQDLEKQHPEF---Y 59 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 DP P ++GG + + V H P SL+ +++E+LR++ RI R D + FT Sbjct: 60 DPASPTQRVGGAITKNFETVVHDYPMYSLDNSYSVEELREWEKRIQRVLG---DVPVTFT 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E K DG I++ Y+ G + A RGDG G+DV+ +R I +IP L + P ++RG Sbjct: 117 CELKYDGASISLTYQDGALLRAVTRGDGTQGDDVTTNVRTIRSIPLRLQGDYPNRFDIRG 176 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+ + F +N E + G PY NPRN ASG L+ + + + + ++ Sbjct: 177 EIVLPLEGFARMNRERVENGEDPYMNPRNTASGSLKLQDSSIVAERPLDCLLYGMAGRDL 236 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A +E+L R LGF V + + +V+Y S R LPY+ DG+V KV+ Sbjct: 237 GADSHFEILGLARKLGFKVPDTAKLCKNIDEVVAYLEYWDSHRLELPYETDGVVVKVNSL 296 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q++LG A+SPRW +++KF +QA+TRL I Q+GRTG +TPVA LEPV + G + Sbjct: 297 QQQEELGYTAKSPRWAMAYKFKSEQAATRLERITYQVGRTGAITPVANLEPVLLAGTTVK 356 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN D I L D+R GD V V++ GE+IPK+ + ++R ++ P + Sbjct: 357 RASLHNADQIAKL-----------DVREGDTVYVEKGGEIIPKITGVDFSKRPENSAPTT 405 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 + S CP C + +VR+ A H C C Q R++HF+SR A +IEGLG + Sbjct: 406 YISACPECGTELVRNPGE------AQHFCPNDTGCPPQITGRIQHFISRKAMDIEGLGSE 459 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ FK I AD++TL + + + S NL + + R + Sbjct: 460 TVELLFKE----GLIGDYADLYTLTTDD------LLPLERMAEKSAANLVEGVAASRKVP 509 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 ER +F+LGIR+VG +A+ LA+ Y + L +V +G IA Sbjct: 510 FERVLFALGIRYVGETVAKKLARAYKNIDALMAA----------SADELQQVDEIGQRIA 559 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQ 667 ++VEF+ +P N VE L E+ K V +G + I R++ + Sbjct: 560 GSVVEFFSDPVNRERVEKLKGHGLQFSLSEEQLRGQTDLFRGKTFVVSGVFESIGRNELK 619 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + G V++ +S +T+ ++ G N G SK EKA + GV I++E QFL +L Sbjct: 620 KRIEDNGGKVTSSVSARTNFLVAGANMGPSKREKADKNGVPIISETQFLEMLGD 673 >gi|157804104|ref|YP_001492653.1| NAD-dependent DNA ligase LigA [Rickettsia canadensis str. McKiel] gi|166216233|sp|A8EZT5|DNLJ_RICCK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157785367|gb|ABV73868.1| DNA ligase [Rickettsia canadensis str. McKiel] Length = 689 Score = 535 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 268/709 (37%), Positives = 417/709 (58%), Gaps = 29/709 (4%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S ++A+K L L +I ++ YY + ++ D+EYD L + FP L Sbjct: 7 ISEKEAKKLLKELADKIERYNHAYYIENNHLVSDAEYDQLFNTNLKLEQKFPHLILE--- 63 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P K+G ++ KVTH P LSL +++ +D++ F+ RI F + + I E Sbjct: 64 NSPSKKVGAKIANKFAKVTHQAPMLSLSNVFDEQDVKDFVDRIKNFLRLNEFAPI--FCE 121 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG + Y+ G A RGDG+ GED++A I+ I P ++ PE +EVRGE+ Sbjct: 122 PKIDGLSFSAIYKNGLLTIGATRGDGYIGEDMTANIKTIKNFPHKINNA-PEFLEVRGEI 180 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 YI K DF LN E GR +ANPRNAA+G LR+L+ + R L +FV+ G T + Sbjct: 181 YIEKQDFFNLNKEQEEQGRDKFANPRNAAAGSLRQLDSSVTAKRPLKYFVYSGGATEQNI 240 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A Q E+L+K++ GF VN + A++ I ++Y +K+ R L Y+IDG+VYK+++F+ Sbjct: 241 ASSQNELLKKLKEFGFRVNEISKLADSEEEIFAFYEYLKTNRENLSYEIDGVVYKLNDFA 300 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ ++G AR+PR+ +HKF T+LL I +Q+GRTG LTPVA LEP+ IGG ++ Sbjct: 301 LQNRMGFIARAPRFATAHKFPAIVGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSR 360 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN I +D+R+ D V ++RAG+VIP+++ + + +R DA F+ Sbjct: 361 ATLHNFQEIIR-----------KDVRIRDYVFLQRAGDVIPQIIGVDIGKRSTDATTFNT 409 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P FCP C S++ RC L C AQ ER++HFVS++A +IEGLG++Q Sbjct: 410 PLFCPSCNSKLHYIPE------DIIIRCDNVLNCPAQNYERIRHFVSKNAMDIEGLGRKQ 463 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++F I P DIF L+ + + S TK+EN+ G+G SV NL+ +I + RN+SL Sbjct: 464 VEFLIDK----GLISNPLDIFLLKEKNEASLTKLENMDGWGRKSVENLFKNIEESRNVSL 519 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFI++LGIRH+G + A+ LA+ + SY NF +I + ++++ + L + +GD I Sbjct: 520 PRFIYALGIRHIGEQNAKLLAREFESYNNFISQIELLSKNDSNIYQKLNNLEGIGDKILV 579 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I+ F+ NI ++ L + ++ + K SS + K +VFTG+L R +A+ Sbjct: 580 DIINFFDVKENIELIKKLGEVLNIEDYKETKEHSS-LTGKIVVFTGSLPTTSRVEAKAMA 638 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +LGA V+ +S TD++I G + GSKL+KA++LG+KI++EE++L ++ Sbjct: 639 EKLGAKVAVSVSSNTDLVIAGVDAGSKLKKAKELGIKIIDEEEWLTIVN 687 >gi|78214056|ref|YP_382835.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CC9605] gi|123729638|sp|Q3AGK2|DNLJ_SYNSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|78198515|gb|ABB36280.1| DNA ligase, NAD-dependent [Synechococcus sp. CC9605] Length = 680 Score = 535 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 218/717 (30%), Positives = 345/717 (48%), Gaps = 49/717 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + + L ++ YY P + D+ YD L R + P L R P+ Sbjct: 1 MADPHERAAELRHLLNRAGHAYYVLDAPEMEDTVYDRLYRELLELEQNDPGLQR---PDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG V H + LSL+ +N +DLR + R+ + + D+ + E K Sbjct: 58 PTQRVGGAPAEGFTSVEHRVGMLSLDNAFNRDDLRAWHERLLKVLDRPSDSRLPLVGELK 117 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVY 192 IDG + + Y G AA RGDG GE+++A +R I +IP N PE +EVRGE + Sbjct: 118 IDGNALALSYRNGVLERAATRGDGSRGEEITANVRTISSIPLRLQIENPPEWVEVRGEAF 177 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251 I F A+N E +ANPRNA +G LR+L+P R L+FF + L + Sbjct: 178 IPDATFAAINAEREQRDEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPGDAQP 237 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 GQ+ L+ + GF VN I + + + R LPY DG+V K+D+ L Sbjct: 238 PGQWAALEWLNSAGFRVNPNRELCGDLAAIQRFCDHWEQGRHDLPYATDGVVVKLDDLQL 297 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q + G ++PRW ++ K+ ++A TRLL + Q+GRTG +TPVA E V + G ++ A Sbjct: 298 QDEAGFTQKAPRWAVALKYPAEEAPTRLLRVGAQVGRTGAITPVAEFEAVPLAGTSVSRA 357 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I L D+ +GD ++V++AGE+IP+VV ++ R DA P P Sbjct: 358 TLHNADRIAEL-----------DLHLGDTIVVRKAGEIIPEVVRVLPELRPSDATPVQLP 406 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C S +VR+ + AA RC +C A L+H+VS+ A +++GLG + + Sbjct: 407 QQCPECGSNLVREGDE------AATRCVNS-SCPAILRGGLRHWVSKGALDVDGLGSKLI 459 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + + AD++ L S + GD S TNL +++ + Sbjct: 460 EQLVDR----GLVGSLADLYRLDAALLAS------LDRMGDKSATNLVEALKASKQQPWH 509 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R ++ LGIRH+G A++LA + S + A + + + +G I+ + Sbjct: 510 RQLYGLGIRHIGEVNAKALAAAFFSIDSLATAAL-------EAPEQIAELHGIGPEISAS 562 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEK---------NVSSEIENKKLVFTGTLQKIQ 662 + ++ P N ++ L + + ++ K LV TGTL + Sbjct: 563 LGQWLHTPANQQLLQDLRSVGFSLEASTSEQEAASQAGADADGVLQGKTLVLTGTLPNLS 622 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +A+ + G VS +S+KTD ++ G+ GSKL KA+ LGV +++E LLQ Sbjct: 623 RSEAKALIETAGGKVSGSVSKKTDYLVAGEAAGSKLTKAESLGVTVLSEADLTALLQ 679 >gi|229055132|ref|ZP_04195560.1| DNA ligase [Bacillus cereus AH603] gi|228721208|gb|EEL72737.1| DNA ligase [Bacillus cereus AH603] Length = 669 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 245/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E +K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEITKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R++ Q DD ++ + E Sbjct: 58 DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVH---QGIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSESLDFLGELGFKTNPYRRTCETIEDVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 IQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD+++L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LELERFGEKSATNLVQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKTINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + K NV S K +V TG L+ + R + Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|224025865|ref|ZP_03644231.1| hypothetical protein BACCOPRO_02607 [Bacteroides coprophilus DSM 18228] gi|224019101|gb|EEF77099.1| hypothetical protein BACCOPRO_02607 [Bacteroides coprophilus DSM 18228] Length = 665 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 224/705 (31%), Positives = 354/705 (50%), Gaps = 48/705 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L +E+ H+ YY + P+I D E+D L R + P+ DP P ++ Sbjct: 5 ERIDQLREELHRHNHNYYILNAPVISDQEFDKLMRELQDLEARHPE---HFDPTSPSMRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G ++N +V H P LSL ++ +++ +F R+ + + E K DGT Sbjct: 62 GSDINKDFVQVEHKYPMLSLGNTYSEDEVTEFYERVRKSL----NEDFEICCEMKFDGTS 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKND 197 I++ YE G+ + A RGDG G+DV+ ++ I +IP VL P+ E+RGE+ + Sbjct: 118 ISLTYEDGRLIRAVTRGDGVRGDDVTDNVKTIRSIPLVLHGTGYPKSFEIRGEILMPWTV 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F LN E +ANPRNAASG L+ N + + G YE Sbjct: 178 FEELNRERELREEPLFANPRNAASGTLKSQNSAVVAARRLDAYLYYLLGDNLPCDGHYEN 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 LQ+ GF ++ R+ ++ I + R LP DG+V KV+ Q+ LG Sbjct: 238 LQEAEKWGFKISKITRKVHSLQEIFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGY 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+SPRW I++KF +QA TRLL + Q+GRTG +TPVA LEPV + G ++ A+LHN D Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLLKVTYQVGRTGAVTPVANLEPVQLSGTVVRRASLHNAD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I L D+ +GD V V++ GE+IPK+ + + R ++ +F + CP C Sbjct: 358 IIASL-----------DLHLGDNVYVEKGGEIIPKITGVDLASRPAGSEKVTFITHCPEC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S++VR + AAH C C Q +++HF+SR A NIEGLG + +D F++ Sbjct: 407 GSKLVRYEDE------AAHYCPNETGCPPQIKGKIEHFISRRAMNIEGLGPETVDQFYQE 460 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I AD++TL++ + GD S N+ I K + ER +F+L Sbjct: 461 ----GLIHDVADLYTLRKEDIC------RLERMGDKSAENIIQGIRKSTEVPYERVLFAL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR VG +A+ +AK + S AQ LI V +G+ IAQ+I ++ Sbjct: 511 GIRFVGETVAKKVAKAFTSIDALAQAT----------LDDLIHVDEIGEKIAQSIRLYFS 560 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + +N +E L + + +++ + +V +G + R + +E + + G Sbjct: 561 DEKNRSLIERLQQAGLQLAAGEKDLSDHTDKLQGQSIVISGVFARHSRDEYKELIEKHGG 620 Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 +SRKT I+ G+N G SKLEKA++LG++I+NEE+FL ++ Sbjct: 621 KNVGSISRKTSFILAGENMGPSKLEKAEKLGIRIVNEEEFLKMID 665 >gi|226224361|ref|YP_002758468.1| DNA ligase [Listeria monocytogenes Clip81459] gi|254781359|sp|C1KW57|DNLJ_LISMC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|225876823|emb|CAS05532.1| Putative DNA ligase [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 671 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 246/711 (34%), Positives = 367/711 (51%), Gaps = 53/711 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K L + + YY P + D+EYD + I A P+ P P + Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ KV H P LSL +N EDL F RI K + I + E KIDG Sbjct: 61 VGGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRIRD----KVGDDIAYMCELKIDGL 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 ++++YE GK+ A RGDG GED++A +R I +IP L + IEVRGE ++ K Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 174 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+ G+ +ANPRNAA+G LR+L+ +R L+ F++ + E+ + Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R N+ + +Y E R+ L YDIDG+V K++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 NTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D + +DIR+GD VL+K+AG++IP+V+ I +R +PF P CP Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSEEPFHMPKNCPA 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CDSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L + K+ + G+ SVTNL SI + SLE+ +F Sbjct: 457 Q----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N D +L + +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNL----------KVADKETLTSINDIGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 N +E L + K K +V TG L+K+ R+ A+ + Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667 >gi|108798849|ref|YP_639046.1| NAD-dependent DNA ligase LigA [Mycobacterium sp. MCS] gi|119867964|ref|YP_937916.1| NAD-dependent DNA ligase LigA [Mycobacterium sp. KMS] gi|126434449|ref|YP_001070140.1| NAD-dependent DNA ligase LigA [Mycobacterium sp. JLS] gi|123369452|sp|Q1BAU4|DNLJ_MYCSS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166216212|sp|A3PXM2|DNLJ_MYCSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166216213|sp|A1UE68|DNLJ_MYCSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|108769268|gb|ABG07990.1| DNA ligase, NAD-dependent [Mycobacterium sp. MCS] gi|119694053|gb|ABL91126.1| DNA ligase, NAD-dependent [Mycobacterium sp. KMS] gi|126234249|gb|ABN97649.1| DNA ligase, NAD-dependent [Mycobacterium sp. JLS] Length = 701 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 216/726 (29%), Positives = 351/726 (48%), Gaps = 45/726 (6%) Query: 2 KKRQLIPIEALSIEQA--RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59 P E + +A R +L E+ H YY P+I D+++D L ++ +A+ Sbjct: 5 STPDAGPQEQATEAEAELRHRWQALADEVRDHQFRYYVRDAPVISDADFDKLFQQLEALE 64 Query: 60 HAFPDLARSEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118 P+L P+ P +GG H LSL+ ++N+++L + +R+ Sbjct: 65 AEHPEL---RAPDSPTQLVGGAGFATDFTPAEHLERMLSLDDVFNVDELTAWSSRVR--- 118 Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 + + + E K+DG + + Y G+ AA RGDG GEDV+ R + +P L+ Sbjct: 119 -AEVGDDAAYLCELKVDGLALALVYRDGRLERAATRGDGRVGEDVTLNARTLDDVPERLT 177 Query: 179 ----LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DIT 233 P ++EVRGEV+ DF ALN ++A G+ P+ANPRN+A+G LR+ NP Sbjct: 178 PSDEFPHPAVLEVRGEVFFRVADFEALNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTAR 237 Query: 234 RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293 R L HG+G T +E +R G PV++ + + R Sbjct: 238 RPLRMVCHGIGYTEGFSPTSLHEAYGALRAWGLPVSDHTTRVQGMDAVRERIAYWGEHRH 297 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 + ++IDG+V K+D+ +LQ++LG +R+PRW +++K+ ++A T+LLDI + +GRTG +T Sbjct: 298 DIEHEIDGVVVKLDQIALQRRLGATSRAPRWAVAYKYPPEEAQTKLLDIRVNVGRTGRVT 357 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 P A +EPV + G+ + ATLHN +K + + +GD V++++AG+VIP+V Sbjct: 358 PFAYMEPVKVAGSTVGLATLHNASEVKR-----------KGVLIGDTVVIRKAGDVIPEV 406 Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473 + +V+ R + F P+ CP C + + + A RC C AQ ER+ Sbjct: 407 LGPVVDLRDGTEREFVMPTHCPECGTELA-----PAKEGDADIRCPNSRTCPAQLRERVF 461 Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533 H R AF+IEGLG + + A I D+FTL T G Sbjct: 462 HVAGRGAFDIEGLGYEAAIALLQ----AGVITDEGDLFTLTEDDLLRTELFTTKGGAVSA 517 Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593 + L ++ K + L R + +L IRHVG AR+LA + S + Sbjct: 518 NGRRLLANLGKAKAQPLWRVLVALSIRHVGPTAARALATEFGSLDAIIEASE-------- 569 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653 L V VG IA A+ E++ + VE + +++ +E +V Sbjct: 570 --DQLAAVEGVGPTIAAAVKEWFTVDWHCAIVEKWRAAGVRMADERDASIARTLEGLSIV 627 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 TG+L R +A+E + G + +S+KT ++ GD+PGSK +KA LGV +++E+ Sbjct: 628 VTGSLAGFSRDEAKEAIIARGGKAAGSVSKKTAYVVAGDSPGSKYDKAIDLGVPVLDEDG 687 Query: 714 FLFLLQ 719 F LL+ Sbjct: 688 FRNLLE 693 >gi|229009789|ref|ZP_04167009.1| DNA ligase [Bacillus mycoides DSM 2048] gi|228751407|gb|EEM01213.1| DNA ligase [Bacillus mycoides DSM 2048] Length = 669 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 245/715 (34%), Positives = 389/715 (54%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + KVTH P LSL +N DLR F R++ Q DD ++ + E Sbjct: 58 DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVH---QGIDDANVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 IQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A IR AD+++L + Q + FG+ S TNL +I + SL Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LELERFGEKSATNLVQAIENSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+ A+++ + + L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKTINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++V ++ N + ++ + + +NV S K +V TG L+ + R + Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMAYKGMKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 615 AKKNIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669 >gi|46907988|ref|YP_014377.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes serotype 4b str. F2365] gi|81565576|sp|Q71YR0|DNLJ_LISMF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|46881258|gb|AAT04554.1| DNA ligase, NAD-dependent [Listeria monocytogenes serotype 4b str. F2365] Length = 671 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 246/711 (34%), Positives = 367/711 (51%), Gaps = 53/711 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K L + + YY P + D+EYD + I A P+ P P + Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ KV H P LSL +N EDL F RI K + I + E KIDG Sbjct: 61 VGGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRIRD----KVGDDIAYMCELKIDGL 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 ++++YE GK+ A RGDG GED++A +R I +IP L + IEVRGE ++ K Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 174 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+ G+ +ANPRNAA+G LR+L+ +R L+ F++ + E+ + Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R N+ + +Y E R+ L YDIDG+V K++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 NTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D + +DIR+GD VL+K+AG++IP+V+ I +R +PF P CP Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSEEPFHMPKNCPA 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CDSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L + K+ + G+ SVTNL SI + SLE+ +F Sbjct: 457 Q----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIQASKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N D +L + +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNL----------KVADKETLTSINDIGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 N +E L + K K +V TG L+K+ R+ A+ + Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFTGKTVVLTGKLEKLTRNDAKALIE 616 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667 >gi|325297787|ref|YP_004257704.1| DNA ligase [Bacteroides salanitronis DSM 18170] gi|324317340|gb|ADY35231.1| DNA ligase [Bacteroides salanitronis DSM 18170] Length = 667 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 225/707 (31%), Positives = 352/707 (49%), Gaps = 48/707 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L +E+ H+ YY + P+I D E+D L R + P+ DPN P ++ Sbjct: 5 ERIDQLREELHLHNYKYYVENAPVISDQEFDHLMRELQDLEARHPE---HYDPNSPSVRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G ++N + +V H P LSL ++ ++ +F RI + + E K DGT Sbjct: 62 GSDINKNFVQVEHRYPMLSLGNTYSQAEVTEFYERIAKAL----NEDFEICCELKYDGTS 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVYISKND 197 I++ YE GK V A RGDG G+DV+ ++ I IP VL + E+RGEV + Sbjct: 118 ISLTYENGKLVRAVTRGDGVRGDDVTDNVKTIRAIPLVLHGDGYPRQFEMRGEVLMPWKV 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F LN E +ANPRNAASG L+ N ++ + G YE Sbjct: 178 FEELNRERELREEPLFANPRNAASGTLKLQNSAEVAARKLDSYLYYMLGENLPHDGHYEN 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 LQ+ GF V++ R+ T I + N R LP DG+V KV+ Q+ LG Sbjct: 238 LQEAARWGFKVSHVTRKVKTLQEIFDFINYWDVERKNLPVATDGIVLKVNSLRQQRNLGY 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+SPRW I++KF ++A TRLL + Q+GRTG +TPVA LEPV + G ++ A+LHN D Sbjct: 298 TAKSPRWAIAYKFQAERALTRLLKVTYQVGRTGAVTPVANLEPVQLAGTVVKRASLHNAD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I L D+ +GD V V++ GE+IPK+ + V R ++ +F + CP C Sbjct: 358 IIASL-----------DLHIGDNVYVEKGGEIIPKITGVDVASRPEGSEKVTFITHCPEC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +VR + AA+ CT +C Q +++HF+SR A NIEGLG + +D F++ Sbjct: 407 GSPLVRYEDE------AAYYCTNESSCPPQIKGKIEHFISRRAMNIEGLGPETVDQFYQE 460 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I AD++TL+ + G+ S N+ I + R + ER +F+L Sbjct: 461 ----GLIHDVADLYTLKAEDLV------RLERMGEKSAENIIQGIARSREVPYERVLFAL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR VG +A+ +A+ + S + A LI V +G+ IA +I+ ++ Sbjct: 511 GIRFVGETVAKKVARAFRSIEALATAT----------LDDLIHVDEIGEKIAGSILRYFA 560 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + +N +E L E +++ K +V +G + R + +E + + G Sbjct: 561 DEKNRNLIERLRTAGLKLEADEEDLAGHTDKLQGKSIVISGVFARHSRDEYKEMIEKHGG 620 Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQY 721 +S+KT I+ G+N G SKLEKA+ L + +M E++FL ++ + Sbjct: 621 KNVGSISKKTSFILAGENMGPSKLEKARALNIPVMGEDEFLAMVGEQ 667 >gi|145593768|ref|YP_001158065.1| DNA ligase, NAD-dependent [Salinispora tropica CNB-440] gi|190359283|sp|A4X487|DNLJ_SALTO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145303105|gb|ABP53687.1| DNA ligase, NAD-dependent [Salinispora tropica CNB-440] Length = 711 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 227/709 (32%), Positives = 352/709 (49%), Gaps = 43/709 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 AR+ ++L +E++ H YY P I D+ +D R A+ FP L P+ P Sbjct: 26 ARERHATLSRELTEHQYRYYVLDAPTISDAAFDEQLRELAALEAEFPAL---RTPDSPTQ 82 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + V H+ +SL+ ++ E+L + R+ R + + E K+DG Sbjct: 83 RVGGAFSTDFTPVAHAERMMSLDNAFSDEELAAWAERVER----DAGGPVPYLCELKVDG 138 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-----LSLNIPEIIEVRGEV 191 I + YE+G+ V AA RGDG +GEDV+A +R+I +P IP+++EVRGE+ Sbjct: 139 LAINLTYERGRLVRAATRGDGRTGEDVTANVRSIQDVPGELTPSAEFPEIPDLLEVRGEI 198 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y F LN ++ GR P+ANPRNAA+G LR+ +P +R L VHG G Sbjct: 199 YFPVAGFADLNAGLVEQGRAPFANPRNAAAGSLRQKDPRITASRPLRLVVHGFGARRGWA 258 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q E +R G P ++ R G+ Y + R + ++IDG+V KVD + Sbjct: 259 PSTQSESYAALRTWGLPTSDRWRVVPGLAGVAEYVAHYAAHRHDVEHEIDGVVVKVDPVA 318 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q +LG +R+PRW I+ K+ ++ +TRLLDID+ +GRTG +TP A LEPV + G+ + Sbjct: 319 IQGRLGSTSRAPRWAIAFKYPPEEVNTRLLDIDVNVGRTGRVTPFAVLEPVRVAGSTVAL 378 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN ++ + + +GD V++++AG+VIP+V+ +V R P+A+ F Sbjct: 379 ATLHNAREVER-----------KGVLIGDTVVIRKAGDVIPEVLGPVVELRPPEARSFVM 427 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP C + + + RC +C AQ ER+ H R AF+IE LG + Sbjct: 428 PSRCPCCGTPLA-----PAKEGDIDIRCPNTRSCPAQLRERVFHLAGRGAFDIEVLGYKG 482 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +E I D+FTL Q + N G + L +++ + L Sbjct: 483 AAALLDAE----IITDEGDLFTLDTAQLARSPFFVNKDGSLGSNAVKLLENLTVAKEREL 538 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R + +L IRHVG A++LA+++ S + Q L V VG IA Sbjct: 539 WRVLVALSIRHVGPTAAQALARHFRSVEAIDQAGE----------EELSAVDGVGPTIAA 588 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ E++ + V + +E +V TGTL R +A E + Sbjct: 589 SVREWFAVAWHREVVRKWAEAGVRMAEEAVAQGPRPLEGVTVVVTGTLAGYSRDQAAEAI 648 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G V+ +S+KT ++VGDNPG+K EKA L V +++EE F LL Sbjct: 649 QSRGGKVTGSVSKKTAFVVVGDNPGTKAEKAAGLKVPVLDEEGFQVLLD 697 >gi|290893414|ref|ZP_06556399.1| DNA ligase [Listeria monocytogenes FSL J2-071] gi|290557065|gb|EFD90594.1| DNA ligase [Listeria monocytogenes FSL J2-071] Length = 671 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 247/711 (34%), Positives = 368/711 (51%), Gaps = 53/711 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K L + + YY P + D+EYD + I A P+ P P + Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ KV H P LSL +N EDL F RI K + I + E KIDG Sbjct: 61 VGGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRIRD----KVGDDIAYMCELKIDGL 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 ++++YE GK+ A RGDG GED++A +R I +IP L + IEVRGE ++ K Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 174 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+ G+ +ANPRNAA+G LR+L+ +R L+ F++ + E+ + Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R N+ + +Y E R+ L YDIDG+V K++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D + +DIR+GD VL+K+AG++IP+V+ I ER + +PF P CP Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEERSGNEEPFHMPKNCPT 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CDSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L + K+ + G+ SVTNL SI + SLE+ +F Sbjct: 457 Q----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N D +L + +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNL----------KVADKETLTSINDIGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 N +E L + K K +V TG L+K+ R+ A+ + Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667 >gi|169630426|ref|YP_001704075.1| NAD-dependent DNA ligase LigA [Mycobacterium abscessus ATCC 19977] gi|254781373|sp|B1MDV2|DNLJ_MYCA9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169242393|emb|CAM63421.1| DNA ligase (polydeoxyribonucleotide synthase NAD+) [Mycobacterium abscessus] Length = 681 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 214/712 (30%), Positives = 346/712 (48%), Gaps = 43/712 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +++ L +E+ H YY P+I D ++D L RR A+ +P+L P+ P Sbjct: 3 SDIQRQWGELAEEVRGHQFRYYVKDAPVISDGQFDELLRRLTALEEQYPEL---RTPDSP 59 Query: 75 LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 +GG V H LSL+ ++ ++L + R+ + E K Sbjct: 60 TQLVGGAGFVTEFRSVDHLERMLSLDNAFSSDELTAWDARVRGDIG----QEPEYLCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV----LSLNIPEIIEVRG 189 IDG +++ YE G V A RGDG SGEDV+ R I +P IP ++EVRG Sbjct: 116 IDGVALSLVYENGVLVRGATRGDGRSGEDVTLNARTIEDVPERLAKSEKYPIPALLEVRG 175 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EV+ DF ALN ++ + P+ANPRN+A+G LR+ NP R L HGLG+ Sbjct: 176 EVFFRLEDFEALNASLVEESKPPFANPRNSAAGSLRQKNPAITARRRLRMICHGLGRAEG 235 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + ++ + G PV+ + + N R + ++IDG+V KVD Sbjct: 236 FSPESLHDAYLALGEWGLPVSTHTTKVRGIAKVQERVNYWAEHRHDVEHEIDGVVVKVDT 295 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ++LG +R+PRW I++K+ ++A+T LLDI + +GRTG +TP A + PV + G+ + Sbjct: 296 VALQRRLGSTSRAPRWAIAYKYPPEEATTELLDIRVSVGRTGRVTPFAYMTPVKVAGSTV 355 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHN +K + + +GD V++++AG+VIP+V+ + + R+ + + F Sbjct: 356 SLATLHNASEVKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVADLRNGNEREF 404 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C + + + + A RC +C AQ ER+ H R AF+IE LG Sbjct: 405 VMPTACPECGTTLAHE-----KEGDADIRCPNSRSCPAQLRERVFHVAGRGAFDIEALGY 459 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + A I D+F L T + G + L D+++K + Sbjct: 460 EAAIALL----AAGVIEDEGDLFGLTADDLLRTDLFKTKSGALSANGARLLDNLDKAKQQ 515 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L R + +L IRHVG AR+LA + + L V VG I Sbjct: 516 PLWRVLVALSIRHVGPTAARALATEFGDLEAIEGA----------SVEQLAAVEGVGATI 565 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A A+V+++ + V+ + + ++ +E +V TG+L R +A+E Sbjct: 566 AAAVVDWFSVDWHRAIVDKWRAAGVRTADERDDSIPRNLEGLSIVVTGSLPGFSRDEAKE 625 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G ++ +S+KT ++VGD+PGSK +KA +LGV I++E+ F LL Sbjct: 626 AIIARGGKSASSVSKKTAFVVVGDSPGSKYDKAVELGVTILDEDGFRALLAD 677 >gi|241764431|ref|ZP_04762455.1| DNA ligase, NAD-dependent [Acidovorax delafieldii 2AN] gi|241366173|gb|EER60750.1| DNA ligase, NAD-dependent [Acidovorax delafieldii 2AN] Length = 697 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 259/725 (35%), Positives = 385/725 (53%), Gaps = 61/725 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S+ QA +L ++ YY +P + D+EYD++ R A+ A PDL P+ Sbjct: 11 SLAQAA---DALRARLNLWAHQYYVMDEPTVPDAEYDSVFRELQALETAHPDLI---TPD 64 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKD-DNSIFFT 129 P ++ G + L V H +P LS+ + E + F R+ D + + Sbjct: 65 SPTQRVIGAVMDGLPPVRHVVPMLSIHTETDTEATGAQAFDARVRHELGLAPSDPPVEYV 124 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS--------LNI 181 EPK DG +++RYE G+ V AA RGDG GEDV+ IR I IP VL N+ Sbjct: 125 AEPKFDGLAMSLRYENGRLVQAATRGDGEVGEDVTHNIRTIRQIPLVLPFDTPVSGGNNV 184 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFV 240 P ++EVRGEVY+ + DF ALN+ G K + NPRNAA+G +R+L+ R L+FF Sbjct: 185 PPLLEVRGEVYMRRADFDALNERQREHGGKTFVNPRNAAAGAVRQLDSGIAAQRPLSFFA 244 Query: 241 HGLGKTSE-----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295 +GLG + + YE+LQ ++ GFPV V+ +V+Y+ + + R L Sbjct: 245 YGLGAITPVGEGGPAFRTHYEVLQTLKSWGFPVAAQVQITQGATELVAYHQRVGASRDAL 304 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 PYDIDG+VYKV+ LQ+ LG + R PRW ++HK+ ++ +T++ ID+Q+GRTG +TPV Sbjct: 305 PYDIDGVVYKVNSLLLQRDLGFKTREPRWAVAHKYPAQEMATKIEGIDVQVGRTGKITPV 364 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 ARL PV +GG +TNATLHN I+ + +RVGD V+V+RAG+VIP+VV Sbjct: 365 ARLAPVFVGGVTVTNATLHNLFEIRK-----------KGVRVGDTVIVRRAGDVIPEVVG 413 Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475 ++ R F P+ CP+C S VVR+ A HRCTGGL C+AQ+ E + HF Sbjct: 414 VMPGNRVGYVPNFRMPNACPVCGSDVVREKGE------ANHRCTGGLFCAAQRKEAILHF 467 Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 +R A +IEGLG + +D A IR D++ L T + + + S Sbjct: 468 AARRAMDIEGLGDKLVDQLVD----ANVIRTLPDLYRL------GLTSLIALERMAEKSA 517 Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 N+ ++ K + +L RF+F+LGIRHVG A+ LA+++ Sbjct: 518 QNVLAALEKSKQTTLPRFLFALGIRHVGEATAKDLARHFGVLDAIMDATE---------- 567 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVF 654 L+ V VG ++A+AI F+ P N VE L V+ G + + +V Sbjct: 568 EQLLAVNDVGPVVAKAIHTFFGQPHNREVVEQLRACGVTWPEGAPAERAPQVLAGMTVVL 627 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TGTL + R A++ + GA V+ +S+KT ++ G+ GSKL +AQ+LGV +++E Sbjct: 628 TGTLPTLSRDAAKDLLEAAGAKVAGSVSKKTHYVVAGEEAGSKLARAQELGVPVLDEAGM 687 Query: 715 LFLLQ 719 L LL Sbjct: 688 LALLA 692 >gi|282850287|ref|ZP_06259666.1| DNA ligase (NAD(+)) [Veillonella parvula ATCC 17745] gi|282579780|gb|EFB85184.1| DNA ligase (NAD(+)) [Veillonella parvula ATCC 17745] Length = 667 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 229/709 (32%), Positives = 368/709 (51%), Gaps = 46/709 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L+QE+++ YY P + D EYD R + A P+ P+ P + Sbjct: 4 KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIV---PSSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++ S KV H P LSL ++N +++R F R+ + + +E KIDG Sbjct: 61 VGMKVEGSFEKVVHGRPMLSLSNVFNADEVRAFGNRVEKELG---HKPSSYVVELKIDGL 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G FV A RGDG GEDV+A +R I +IP L N PE IEVRGE Y+ ++ Sbjct: 118 AVNLHYENGMFVRAVTRGDGRIGEDVTANVRTIKSIPLFL-DNAPEFIEVRGEAYMPHSE 176 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N+E G + NPRNAA+G LR+ +P R L FF + +G Q E Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITANRNLAFFAYAIGSEVGANIHSQEE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L+ + F VN R T ++ + R LPYD DG+V KV+ F Q+ LG Sbjct: 237 LLKSLENFKFSVNPHYRVCKTIDEVIEAIDYWGDKRHELPYDTDGMVIKVNSFDDQEVLG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ P+W ++K+ ++ T L DI I +GRTG+LTP LE V + G ++ TLHN+ Sbjct: 297 STAKDPKWATAYKYPPEEVETILKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQ 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+I +DIR+GD V++ +A E+IP+V+ ++ +R+ PF+ P+ CP+ Sbjct: 357 DFID-----------EKDIRIGDHVIIHKAAEIIPEVIRVVPEKRNGSEIPFTIPNTCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C+S VR AA RCT C A + E++ HF SRDA NI+GLG ++ Sbjct: 406 CESPAVRREGE------AAVRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 ++ I D++ L Q + G S NL +I+ ++ L+R ++ Sbjct: 459 NK----LITNVVDLYHLTVDQLVTM------DRMGKKSAENLVKAIDDSKSRGLDRVLYG 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR +G++ A ++A S F L+ V +G +A +IVE+ Sbjct: 509 LGIRLIGSKAATTIANVVQSIDRFMTITK----------DELVAVEEIGPTMADSIVEYR 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 Q+P + +E L + + +++E + +V TG L+ + R +A + + GA Sbjct: 559 QDPAHKEIIEGLTQAGLKMTVDVVEAAGNQMEGEIVVLTGKLEVMGRSEAGKILEAHGAK 618 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 V+ +S+KT +++ G++ GSKL KA +LG++++NEE+F+ LL++ + Sbjct: 619 VTGSVSKKTTLVVAGEDSGSKLTKANELGIRVINEEEFVELLKELGEDI 667 >gi|198274661|ref|ZP_03207193.1| hypothetical protein BACPLE_00817 [Bacteroides plebeius DSM 17135] gi|198272108|gb|EDY96377.1| hypothetical protein BACPLE_00817 [Bacteroides plebeius DSM 17135] Length = 666 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 228/706 (32%), Positives = 359/706 (50%), Gaps = 48/706 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L +E+ H+ YY + P I D E+D L R + P+ D N P ++ Sbjct: 5 ERIDQLREELHTHNHNYYILNAPTISDQEFDRLMRELQDLEAKHPE---HYDENSPSVRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G ++N +V H P LSL ++ ++R+F R+ + + E K DGT Sbjct: 62 GSDLNKEFRQVEHKYPMLSLGNTYSETEVREFYERVRKAL----NEDFEICCELKFDGTS 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKND 197 I++ YE G+ V A RGDG G+DV+ ++ I +IP LS P E+RGE+ + Sbjct: 118 ISLTYEDGRLVQAVTRGDGVRGDDVTDNVKTIRSIPLRLSGEGYPRRFEIRGEILMPWTV 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F LN E +ANPRNAASG L+ N + E+ G YE Sbjct: 178 FEELNREREQREEPLFANPRNAASGTLKSQNSAVVASRKLDAYLYYLLGEELPHDGHYEN 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 LQ+ GF V++ +R+A T + + N R LP DG+V KV+ Q+ LG Sbjct: 238 LQEAARWGFKVSSHMRKARTLEEVFDFINYWDLERKNLPVATDGIVLKVNSQRQQRNLGF 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+SPRW I++KF +QA T+LL + Q+GRTG +TPVA LEPV + G ++ A+LHN D Sbjct: 298 TAKSPRWAIAYKFQAEQACTKLLKVTYQVGRTGAVTPVANLEPVQLSGTVVKRASLHNAD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ L D+ +GD V V++ GE+IPK+ + + R ++ +F + CP C Sbjct: 358 IIESL-----------DLHLGDMVYVEKGGEIIPKITGVDKDARPEGSEKVTFITHCPEC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 SR+VR + AAH CT C Q R++HF+SR A NIEGLG + +D F++ Sbjct: 407 GSRLVRYEDE------AAHYCTNEDGCPTQIKGRIEHFISRRAMNIEGLGPETVDQFYQE 460 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I AD++TLQ + G+ S N+ + K + + ER IF+L Sbjct: 461 ----GLIHDVADLYTLQAADIC------RLNRMGEKSAENIIQGVEKSKTVPYERVIFAL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR VG +A+ +A+ + S + LI V +G+ IAQ+I+ ++ Sbjct: 511 GIRFVGETVAKKVARAFRSIDDLKSAT----------LDDLIHVDEIGEKIAQSILRYFH 560 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + +N+ +E L + E+ +++ + +V +G R + + + + G Sbjct: 561 SEKNLQLIERLREAGVQMAISEEETAGQTDKLQGQSIVISGVFAHHSRDEYKALIEKHGG 620 Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 +S+KT I+ G+N G SKLEKA++LG++I+NEE+FL ++ + Sbjct: 621 KNVGSISKKTSFILAGENMGPSKLEKAEKLGIRIVNEEEFLGMIGE 666 >gi|254832503|ref|ZP_05237158.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 10403S] Length = 671 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 246/711 (34%), Positives = 368/711 (51%), Gaps = 53/711 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K L + + YY P + D+EYD + I A P+ P P + Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ KV H P LSL +N EDL F RI K + I + E KIDG Sbjct: 61 VGGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRIRD----KVGDDIAYMCELKIDGL 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 ++++YE GK+ A RGDG GED++A +R I +IP L + IEVRGE ++ K Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 174 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+ G+ +ANPRNAA+G LR+L+ +R L+ F++ + E+ + Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R ++ + +Y +E R+ L YDIDG+V K++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCSSLEEVYAYIDEWTEKRADLAYDIDGIVLKLNNLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D + +DIR+GD VL+K+AG++IP+V+ I ER +PF P CP Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPT 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CDSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKAIIQLFS 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L + K+ + G+ SVTNL SI + SLE+ +F Sbjct: 457 Q----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N D +L + +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNL----------KVADKETLTNINDIGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 N +E L + K K +V TG L+K+ R+ A+ + Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667 >gi|254829489|ref|ZP_05234176.1| DNA ligase [Listeria monocytogenes FSL N3-165] gi|258601904|gb|EEW15229.1| DNA ligase [Listeria monocytogenes FSL N3-165] Length = 671 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 246/711 (34%), Positives = 367/711 (51%), Gaps = 53/711 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K L + + YY P + D+EYD + I A P+ P P + Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ KV H P LSL +N EDL F RI K + I + E KIDG Sbjct: 61 VGGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRIRD----KVGDDIAYMCELKIDGL 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 ++++YE GK+ A RGDG GED++A +R I +IP L + IEVRGE ++ K Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 174 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+ G+ +ANPRNAA+G LR+L+ +R L+ F++ + E+ + Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R ++ + +Y E R+ L YDIDG+V K++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCSSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D + +DIR+GD VL+K+AG++IP+V+ I ER +PF P CP Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPT 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CDSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L + K+ + G+ SVTNL SI + SLE+ +F Sbjct: 457 Q----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N D +L + +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNL----------KVADKETLTNINDIGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 N +E L + K K +V TG L+K+ R+ A+ + Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667 >gi|118594798|ref|ZP_01552145.1| DNA ligase, NAD-dependent [Methylophilales bacterium HTCC2181] gi|118440576|gb|EAV47203.1| DNA ligase, NAD-dependent [Methylophilales bacterium HTCC2181] Length = 671 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 248/707 (35%), Positives = 385/707 (54%), Gaps = 46/707 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++ L L++ IS H+ YY P+I D+E+D + AI P+L + P Sbjct: 7 IKERLVDLKKLISEHNYHYYVLDNPLISDAEFDKIFLEIKAIEDLNPELITI---DSPTQ 63 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GGE N S ++TH P LSL ++ +DL F RI + I + EPK DG Sbjct: 64 RVGGEPNKSFKQITHQRPMLSLGNAFDEKDLDVFDKRIREELGVAN---ISYVAEPKFDG 120 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISK 195 +TI Y G+ AA RGDG GEDV+ I+ I +IP S + IE+RGEV + K Sbjct: 121 LAVTIVYVDGELHLAATRGDGSVGEDVTHNIKTIKSIPLKLPSNSPAGQIEIRGEVIMLK 180 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 NDF+ LN + K +ANPRNAA+G LR+L+PT F Q Sbjct: 181 NDFIGLNKRQLEANEKVFANPRNAAAGSLRQLDPTIAASRPLSFYAYSIFCDNKTLASQE 240 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L ++ L P +N ++ + G++ +YN + + R +LP+DIDG+VYKV+ ++Q +L Sbjct: 241 EGLDLLKQLLIPTSNLTKRVDGVRGMIDFYNAINNARKSLPFDIDGVVYKVNSLNMQDEL 300 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +R+PRW I+HKFA ++A T + DI++Q+GRTG +TPVARL PV + G +TNATLHN Sbjct: 301 GFVSRAPRWAIAHKFAAEEAMTTIKDINVQVGRTGSITPVARLMPVVVAGVTVTNATLHN 360 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 ED ++ +DI +GD V+V+RAG+V+P+V+ ++ +R D + F P+ CP Sbjct: 361 EDELRR-----------KDIHIGDFVMVRRAGDVVPEVIKVVHEKRPNDIKKFEMPTLCP 409 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + +VR+ + RC G+ C AQ+ + + HF SR A +I+GLG++ +D Sbjct: 410 ECSNVLVREEGE------SVLRCNAGMLCPAQRKQSIMHFASRKAMDIDGLGEKIIDQLI 463 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 +S + +D++T++ K+ + F S NL +SI K + +L +FI+ Sbjct: 464 ESS----LVLSVSDLYTVKTE------KLLKLDRFAKKSAENLIESIEKSKKTTLGKFIY 513 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR+VG A LAK + S SL+ + +G +A +I + Sbjct: 514 ALGIRNVGEATAYDLAKQFGSIDKIMSASK----------ESLLSIHDIGPTVATSIQNY 563 Query: 616 YQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + N V LLKE + +S+E+E V TGTL ++R +A+ + Sbjct: 564 FNEDTNREQVAILLKEGIQWDSIEVGAEEISNELEGLVFVLTGTLTSLKRDEAKNLILSC 623 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G VS +S+KTD +I G + GSKL+KA LGVK++ E++ + L ++ Sbjct: 624 GGKVSGSVSKKTDYVIAGLDAGSKLDKASALGVKVIGEDELIQLTKK 670 >gi|299820617|ref|ZP_07052507.1| NAD-dependent DNA ligase LigA [Listeria grayi DSM 20601] gi|299818112|gb|EFI85346.1| NAD-dependent DNA ligase LigA [Listeria grayi DSM 20601] Length = 674 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 239/715 (33%), Positives = 369/715 (51%), Gaps = 51/715 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K +L +E++ + YY P + D YD + I A PD + P + Sbjct: 5 KKRYEALIEELNQYSYDYYVQDNPSVEDVVYDKAMQELLKIEEAHPDWITV---DSPSQR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ KVTH P LSL + +DLR F RI D + E KIDG Sbjct: 62 VGGEILEGFQKVTHKTPMLSLGNAFGEDDLRDFDRRIQDRIG--DGTEYEYMCELKIDGL 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +++ YE G++ A RGDG +GED++A +R + +IP L + IEVRGE Y+ K Sbjct: 120 AVSLIYENGEYRQGATRGDGTTGEDITANLRTVRSIPIKLKETLS--IEVRGETYMPKKS 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 F LN G +ANPRNAA+G LR+L+ R L+ F++ + ++ E Sbjct: 178 FQKLNGAREEEGLPLFANPRNAAAGSLRQLDTKIAAKRNLDIFLYSVADFGDMGVTKHSE 237 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R +++Y E + RS L Y+IDG+V K+++ Q+++G Sbjct: 238 GLDYLEKLGLKVNKERRVCKNIEEVLAYVEEWTAKRSDLAYEIDGIVVKLNDLRQQEEVG 297 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T L DI++++GRTG++TP A L+PV++ G ++ A+LHNE Sbjct: 298 YTVKSPRWAIAYKFPAEEVPTVLRDIELRVGRTGVITPTAILDPVHVAGTTVSRASLHNE 357 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D IK +DIR+ D V++K+AG++IP+V+ + +R + F P CP Sbjct: 358 DLIK-----------QKDIRIKDTVMIKKAGDIIPEVIRSLPEKRTGSEEEFHMPVHCPE 406 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR A RC C AQ E L HFVSR A NI+GLG++ + F Sbjct: 407 CGSELVRLEGE------VALRCINPK-CPAQLKEGLIHFVSRSAMNIDGLGEKVVRQLFT 459 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 E I AD++ L + ++ + G+ SVTNL +I K + SLER +F Sbjct: 460 HE----LIHDVADLYFLSKE------ELLQLERMGEKSVTNLLAAIEKSKQNSLERLLFG 509 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ ARSLA ++ + N + LI + +G+I+A +IV ++ Sbjct: 510 LGIRHVGAKAARSLAIHFETMDNVKEA----------SLEDLIAINDIGEIMADSIVTYF 559 Query: 617 QNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 +N ++ L + KK+V TG L++++R +A+ + Sbjct: 560 ENEEVHSLLQELERAGVNMTYTGPRLEEVPEEDLVFAGKKVVLTGKLEQLKRDEAKALIE 619 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 LG VS +S+ TDI++ G + GSKLEKA++L + I +E L L ++ Sbjct: 620 SLGGSVSGSVSKNTDIVVAGSDAGSKLEKAEELSIPIWSENDLLEYLPDEGGLIK 674 >gi|304415222|ref|ZP_07395930.1| DNA ligase (NAD(+)-dependent) [Candidatus Regiella insecticola LSR1] gi|304282928|gb|EFL91383.1| DNA ligase (NAD(+)-dependent) [Candidatus Regiella insecticola LSR1] Length = 674 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 223/715 (31%), Positives = 377/715 (52%), Gaps = 49/715 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++++ + +H+ Y+ P I D+EYD L + +P+L + + Sbjct: 1 MKSIIQQINQRRAILQHHEYQYHVLDNPEIPDAEYDRLMNELRELETQYPELICA---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G +V H P LSL+ +++ + F R++ + + F EPK Sbjct: 58 PTQRVGAVPLNIFEQVKHESPMLSLDNVFDEKSYLAFHQRLHNRLNLTE--ELAFCCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG +++ YEKG+ V AA RGDG GE+++A +R I TIP L + P+ IE+RGEV+ Sbjct: 116 LDGVAVSLLYEKGELVRAATRGDGSIGENITANVRTIRTIPLRLRGDDIPQQIEIRGEVF 175 Query: 193 ISKNDFLALNDE-MIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-I 249 + F N+ +K ++NPRNAA+G LR+L+P R L+FF +G+G Sbjct: 176 MPLIGFAQFNEAARHKAEKKFFSNPRNAAAGSLRQLDPRITAKRPLDFFCYGMGLLKGGA 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + + L + + G PV+N +++ I+++Y ++ R L +DIDG+V KVD+ Sbjct: 236 LPQHHLQRLLQFKAWGLPVSNQIKRCIGSDQIIAFYRHLEQQRDRLDFDIDGVVIKVDDL 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ++LG AR+PRW + KF ++ T++ ++ Q+GRTG +TPVARLEP+ + G +++ Sbjct: 296 SLQERLGFSARAPRWATAFKFPAQEKMTQVRQVEFQVGRTGAITPVARLEPIQLAGVMVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D IK L D+ +GD V+++RAG+VIPK+V +++N R +AQ S Sbjct: 356 NATLHNADEIKRL-----------DLHIGDTVIIRRAGDVIPKIVSVVMNARPLEAQEVS 404 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP CP+C S + R RC+G L C+AQ+ + LKHFVSR A +++G+G + Sbjct: 405 FPLHCPVCGSDIERLEGET------IARCSGALLCTAQRKKMLKHFVSRRALDVDGMGDK 458 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ E ++ PAD+F L + ++ ++ + + + Sbjct: 459 IIEQLVTKE----YVKHPADLFHLTVEKLMGLNRMGAKSAHNLIAALEKRN-----KRLX 509 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 R VG A +LA ++ + + D +L +V VG ++A Sbjct: 510 XXXXXXXXXXREVGETTAANLAAHFRTLSHLRSA----------DVETLQQVADVGVVVA 559 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRH----EKNVSSEIENKKLVFTGTLQKIQRHK 665 ++ F N + AL + + ++ +K +V TG+L + R Sbjct: 560 THVINFLAQEHNQHVINALEAVIHWPEPEQIIAVAEESNNIFTSKTIVLTGSLNSLSREN 619 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LGA VS +S+KTD++I G+ GSKL KAQ+LG+K++ E++ L LL Sbjct: 620 AKDRLVALGAKVSNSVSKKTDLVIAGEGAGSKLIKAQELGIKVITEDEMLRLLSD 674 >gi|288572809|ref|ZP_06391166.1| DNA ligase, NAD-dependent [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568550|gb|EFC90107.1| DNA ligase, NAD-dependent [Dethiosulfovibrio peptidovorans DSM 11002] Length = 674 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 228/711 (32%), Positives = 364/711 (51%), Gaps = 49/711 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + SL++EI+ HD YY P I DS YD + R + P L Sbjct: 1 MVSRDILRRYESLKKEIARHDRLYYVLDSPEIDDSSYDRMMRELLELEREHPTLV---SD 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG KV HS P LSL+ ++++ +LR F++R +S + E Sbjct: 58 DSPSRRVGGRPLDGFLKVVHSHPMLSLDDVFDVSELRSFLSR-----ATGPVSSFPWVCE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YE G FV A RGDG GEDV++ + + ++P L++++P +EVRGEV Sbjct: 113 LKIDGLAVSLIYEDGVFVGGATRGDGSVGEDVTSNLLTVRSLPLRLNIDVPGRLEVRGEV 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y++KN F LN+ G +ANPRNAA+G LR+L+P R L+ FV+ + E Sbjct: 173 YMAKNSFARLNERREEKGDPLFANPRNAAAGSLRQLDPRVAAERRLDLFVYAVVSPEERG 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q ++L ++ G PV + + + + + R +L Y DG+V K D Sbjct: 233 INSQSDLLSWLKKAGLPVQDAWELCSDLDEVEEFVARWQEERFSLSYVTDGVVVKADPVE 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +LG AR+PRW +++K+ ++ +T L +I+I +GRTG +TPVA LEPV + G+++ Sbjct: 293 QWGRLGRTARAPRWAVAYKYPPEEKTTVLKEIEISVGRTGAMTPVAILEPVQLAGSVVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +D+R+GDRV V++AGE+IP++V + R+ PF Sbjct: 353 ASLHNEDEIRR-----------KDVRIGDRVKVRKAGEIIPEIVSVDSEARNGTEIPFEM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CPIC S VR + + +C AQ E L+HF SR +I GLG++ Sbjct: 402 PRNCPICGSEAVRLPDESAWR-------CPNKSCPAQMNEELRHFASRGCMDIRGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 S +R AD++ L+ Q S + G S +NL +I ++ L Sbjct: 455 ASQLVGS----GFVRDLADLYELKEEQIIS------LDRMGPKSASNLISAIRGSKDRPL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + LGIRHVG +A L + Y S + + D L + VG IA Sbjct: 505 AALLAGLGIRHVGKGVAELLVERYGSMEALRRA----------DPEELGSIEGVGPAIAA 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQE 668 ++ F+ + NI ++ L+ R + S + VFTG L++ R +AQ+ Sbjct: 555 SLEAFFSDDGNIRTLDRLMDHGVRMEERRPETSSDGKLLSGMTFVFTGELKRASRSEAQK 614 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V +G ++ +S KT ++ G++PGSKL+KA LG+ +++E+ F +++ Sbjct: 615 LVKSMGGKATSSVSGKTSYVVAGESPGSKLDKAVSLGIPVLDEDGFYEMVE 665 >gi|254993539|ref|ZP_05275729.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J2-064] Length = 665 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 246/707 (34%), Positives = 367/707 (51%), Gaps = 53/707 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K L + + YY P + D+EYD + I A P+ P P + Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ KV H P LSL +N EDL F RI K + I + E KIDG Sbjct: 61 VGGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRIRD----KVGDDIAYMCELKIDGL 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 ++++YE GK+ A RGDG GED++A +R I +IP L + IEVRGE ++ K Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 174 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+ G+ +ANPRNAA+G LR+L+ +R L+ F++ + E+ + Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R N+ + +Y E R+ L YDIDG+V K++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 NTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D + +DIR+GD VL+K+AG++IP+V+ I +R +PF P CP Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSEEPFHMPKNCPA 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CDSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L + K+ + G+ SVTNL SI + SLE+ +F Sbjct: 457 Q----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N D +L + +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNL----------KVADKETLTSINDIGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 N +E L + K K +V TG L+K+ R+ A+ + Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663 >gi|217964094|ref|YP_002349772.1| DNA ligase, NAD-dependent [Listeria monocytogenes HCC23] gi|254781360|sp|B8DFG5|DNLJ_LISMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|217333364|gb|ACK39158.1| DNA ligase, NAD-dependent [Listeria monocytogenes HCC23] gi|307571338|emb|CAR84517.1| DNA ligase, NAD-dependent [Listeria monocytogenes L99] Length = 671 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 247/711 (34%), Positives = 367/711 (51%), Gaps = 53/711 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K L + + YY P + D+EYD + I A P+ P P + Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ KV H P LSL +N EDL F RI K + I + E KIDG Sbjct: 61 VGGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRIRD----KVGDDIAYMCELKIDGL 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 ++++YE GK+ A RGDG GED++A +R I +IP L + IEVRGE ++ K Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 174 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+ G+ +ANPRNAA+G LR+L+ +R L+ F++ + E+ + Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R N+ + +Y E R+ L YDIDG+V K++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D + +DIR+GD VL+K+AG++IP+V+ I ER +PF P CP Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPT 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CDSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L + K+ + G+ SVTNL SI + SLE+ +F Sbjct: 457 Q----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N D +L + +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNL----------KVADKETLTSINDIGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 N +E L + K K +V TG L+K+ R+ A+ + Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667 >gi|269798060|ref|YP_003311960.1| DNA ligase, NAD-dependent [Veillonella parvula DSM 2008] gi|269094689|gb|ACZ24680.1| DNA ligase, NAD-dependent [Veillonella parvula DSM 2008] Length = 667 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 229/709 (32%), Positives = 371/709 (52%), Gaps = 46/709 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L+QE+++ YY P + D EYD R + A P+ P+ P + Sbjct: 4 KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIV---PSSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++ S KV H P LSL ++N +++R F R+ + + +E KIDG Sbjct: 61 VGMKVEGSFEKVVHGRPMLSLSNVFNADEVRAFGNRVEKELG---HKPSSYVVELKIDGL 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G FV A RGDG GEDV+A +R I +IP L N PE IEVRGE Y+ ++ Sbjct: 118 AVNLHYENGMFVRAVTRGDGRVGEDVTANVRTIKSIPLFL-DNAPEFIEVRGEAYMPHSE 176 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N+E G + NPRNAA+G LR+ +P R L FF + +G Q E Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITANRNLAFFAYAIGSEVGANIHSQEE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L+ + F VN R T ++ + R LPYD DG+V KV+ F Q+ LG Sbjct: 237 LLKSLENFKFSVNPHYRVCKTIDEVIEAIDYWGDKRHELPYDTDGMVIKVNNFDDQEVLG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ P+W ++K+ ++ T L DI I +GRTG+LTP+ LE V + G ++ TLHN+ Sbjct: 297 STAKDPKWATAYKYPPEEVETILKDITINVGRTGVLTPIGELESVFVSGTNVSRVTLHNQ 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+I +DIR+GD V++ +A E+IP+V+ ++ +R+ PF+ P+ CP+ Sbjct: 357 DFI-----------NEKDIRIGDHVIIHKAAEIIPEVIRVVPEKRNGSEIPFTIPNTCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C+S VR AA RCT C A + E++ HF SRDA NI+GLG ++ Sbjct: 406 CESPAVRREGE------AAVRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 ++ I D++ L Q + G S NL +IN ++ L+R ++ Sbjct: 459 NK----LITNVVDLYHLTVDQLVTM------DRMGKKSAENLVKAINDSKSRGLDRVLYG 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR +G++ A ++A S + F L+ V +G +A +I+E+ Sbjct: 509 LGIRLIGSKAATTIANVVKSMERFMTITK----------DELVAVEEIGPTMADSIIEYR 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 Q+P ++ +E L + + +++E + +V TG L+ + R +A + + GA Sbjct: 559 QDPSHVAIIEGLTQAGLKMTVDVVEAAGNQLEGEIVVLTGKLEVMGRTEAGKILEAHGAK 618 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 V+ +S+KT +++ G++ GSKL KA +LG++++NEE+F+ LL++ + Sbjct: 619 VTGSVSKKTTLVVAGEDSGSKLTKANELGIRVLNEEEFVELLKELGEDI 667 >gi|294102358|ref|YP_003554216.1| DNA ligase, NAD-dependent [Aminobacterium colombiense DSM 12261] gi|293617338|gb|ADE57492.1| DNA ligase, NAD-dependent [Aminobacterium colombiense DSM 12261] Length = 684 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 240/732 (32%), Positives = 379/732 (51%), Gaps = 67/732 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + +A + + +L +EI+ H YY P I D EYDAL R ++ AFP+ +DP Sbjct: 1 MDRREALQRIEALREEINRHAHLYYVLDTPEIADHEYDALFRELASLEEAFPEF---DDP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +++GG KV H P LSL+ + E++ F R++ ++ + E Sbjct: 58 DSPTHRVGGAPLDRFEKVIHESPLLSLDNALSKEEVWSFCDRVFSGLGL---GNLEYLCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YE G F+ A RGDG GEDV+A +R I ++P L + +EVRGEV Sbjct: 115 LKIDGLAVSLIYEDGVFIRGATRGDGLVGEDVTANLRTIRSLPLRLREKVSGRMEVRGEV 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 +++ F ALN E G +ANPRNAA+G LR+L+ + +R L+ F++ + E Sbjct: 175 LMTREQFAALNQEREEGGELLFANPRNAAAGSLRQLDSSITASRKLSIFLYYVAHPQEHG 234 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + Q E+L ++ LGFPV + +T I ++ E + R +LPY DG+V K+++ Sbjct: 235 LRTQQEVLHWLQHLGFPVQSAWGVCSTRQDIDAFIEEWREKRLSLPYSTDGVVLKINQVD 294 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 + LG A++PRW I+ K+ ++ ++R+LDI++ +GRTG LTPVA LEPV++ G ++ Sbjct: 295 FWEDLGTTAKAPRWAIAFKYPPEEKTSRILDIEVSVGRTGTLTPVAHLEPVHLAGTVVRR 354 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+ D+V+V++AGE+IP+VV ++ R + F Sbjct: 355 ASLHNEDEIRR-----------KDIRIKDKVVVRKAGEIIPEVVRVLTEGRDGNEVEFQM 403 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C S V+R A RC +C AQ E + HF SR A +I GLG + Sbjct: 404 PDTCPACGSHVMRIPGE------VALRCPNRASCPAQLREGIAHFASRAAMDIRGLGDKL 457 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + + IR AD++TL+R S + G+ S +NL ++++ +N L Sbjct: 458 ITQLVDRQ----LIRNMADLYTLKREDLLS------LDRMGEKSASNLLEALSVSKNRFL 507 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 I +LGIR VG ++A LA + S + L + VG IA Sbjct: 508 SNLITALGIRLVGKKVAEILADRFHSLDALSSAQE----------EGLSSIDGVGPKIAA 557 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +I F+ + N + L + +V +E+++ VFTG LQ + R +A+ Sbjct: 558 SIKAFFDDEANKEMISRLKDAGVRVVEEKSMSSVEGPLEDQRFVFTGELQSMSRGEAEAL 617 Query: 670 VTQLGAVVSAILSRKTD-----------IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 V LG I++ G GSKL+KA++LG+ I+NEE+FL ++ Sbjct: 618 VKNLGG-----------ASSSSVSKKTSIVVAGPGAGSKLQKARELGITIINEEEFLQMI 666 Query: 719 QQYNTTLRIHDD 730 + Y H D Sbjct: 667 RPYERVFSKHTD 678 >gi|305682056|ref|ZP_07404860.1| DNA ligase (NAD+) [Corynebacterium matruchotii ATCC 14266] gi|305658529|gb|EFM48032.1| DNA ligase (NAD+) [Corynebacterium matruchotii ATCC 14266] Length = 715 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 208/718 (28%), Positives = 347/718 (48%), Gaps = 48/718 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 P E ++ +E L E++ H + YY P I D+E+DAL ++ +A+ P+LA Sbjct: 11 TPAETTDTQEIHQEWQRLASEVTRHRELYYNQ-TPEITDAEFDALFKKLEALEADHPELA 69 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P+ P ++G + S V H LSL+ +++ E+L +++ R+ ++ Sbjct: 70 ---TPDSPTQQVGAPVESSFENVEHLERMLSLDNVFDEEELDEWLQRV---------DAP 117 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV----LSLNIP 182 + E KIDG + + Y G AA RGDG GEDV+ + I +P IP Sbjct: 118 EYVTELKIDGLSLALVYRNGVLERAATRGDGRIGEDVTENAKVIQDVPHTLTATEEFPIP 177 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVH 241 +++EVRGEV+I+ DF +N++ G KP+ANPRNAA+G LR+ + R L H Sbjct: 178 DLLEVRGEVFIAVEDFAEVNEQRQKDGGKPFANPRNAAAGSLRQKDVEAVRRRKLRMLCH 237 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G+G T QY + + G PV++ + T + + R ++DG Sbjct: 238 GIGATEGFTPASQYHAYEALAAWGLPVSDYTKLVKTIDEVHKQVAYWEKHRGDAVCEMDG 297 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 LV KVD + Q+QLG +R+PRW I++K+ ++ T+LLDI +GRTG +TP A +EPV Sbjct: 298 LVVKVDSIAEQRQLGATSRAPRWAIAYKYPPEEVQTKLLDIHEGVGRTGRVTPYAVMEPV 357 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 ++ G+++ ATLHN+ +K + + +GD V++++AGE+IP+V+ +V R Sbjct: 358 SVAGSIVELATLHNQTEVKR-----------KGVLIGDTVVIRKAGEIIPEVLGPVVERR 406 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 + + FP CP C +++ + RC C AQ R+K+ R F Sbjct: 407 DGTEREYVFPENCPSCGTKLA-----PQREGDVDWRCPNSQKCPAQVAARIKYLADRGRF 461 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +IE LG++ + +S + +F L T+ G + + L + Sbjct: 462 DIEALGEKAAEDLVRS----GVLVDEGGLFNLTEADLLRTSIYTTKKGTLNATGKKLLKN 517 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 + ++ L R + SL IR VG +R+LA Y S + Sbjct: 518 LETAKHTDLWRVMASLSIRMVGNTASRALASRYRSLDALRAAT----------VEDIAET 567 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 VG ++AQ+ ++++ + V+ K + +V TG+L+ Sbjct: 568 EGVGLVMAQSFKDWFEVQWHCDIVDQWAKSGVTVEDDASDRPEQVLAGLTVVVTGSLEGF 627 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R A+E + G S +S+KTD ++VG+ GSK +KA+ LG+ I++E F+ LL Sbjct: 628 TRDSAKEAIISRGGKASGSVSKKTDYVVVGEKAGSKEQKARDLGLTILDEAGFVQLLA 685 >gi|265753576|ref|ZP_06088931.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_33FAA] gi|263235290|gb|EEZ20814.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_33FAA] Length = 665 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 232/705 (32%), Positives = 356/705 (50%), Gaps = 48/705 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L +E+ H+ YY + P I D E+D L R + P+ D N P ++ Sbjct: 5 ERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G ++N + +V H P LSL ++ ++ +F R+ + + E K DGT Sbjct: 62 GSDINKNFMQVVHKYPMLSLTNTYSETEVTEFYDRVKKSL----NEDFEICCEMKYDGTS 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKND 197 I++ YE GK V A RGDG G+DV+ ++ I +IP VL PE E+RGE+ + Sbjct: 118 ISLTYENGKLVRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPEAFEIRGEILMPWVV 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F LN E A +ANPRNAASG L+ N + + G YE Sbjct: 178 FEELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPCDGHYEN 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L++ GF +++ R+ T + + R LP DG+V KV+ Q+ LG Sbjct: 238 LKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGF 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+SPRW I++KF +QA TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN D Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHNAD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+GL D+ +GD V V++ GE+IPK+V + N R F ++CP C Sbjct: 358 IIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKNARIMIGDKVKFITYCPEC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S++VR AA+ CT AC Q +++HF+SR A +I+GLG + +D F++ Sbjct: 407 GSKLVRYEGE------AAYYCTNDAACPPQIKGKIEHFISRRAMDIDGLGPETVDQFYQE 460 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 IR AD++TL T+ I N+ G+ S N+ I + + + ER +F+L Sbjct: 461 ----GLIRDVADLYTL------KTSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFAL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR VG +A+ +AK + S A LI V +G+ IAQ+I+ ++ Sbjct: 511 GIRFVGETVAKKVAKSFKSMDALADA----------SLDDLIHVDEIGEKIAQSILLYFA 560 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 NP+N +E L E ++ K +V +G R + +E + + G Sbjct: 561 NPKNRDIIERLRVAGVRLEADEEDTSGHTDKLAGKSVVISGVFAHHSRDEYKELIEKHGG 620 Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 +S KT ++ GDN G SKLEKAQ+LGV I++EE+FL +++ Sbjct: 621 KNVGSISSKTSFVLAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665 >gi|47095684|ref|ZP_00233291.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 1/2a F6854] gi|254900737|ref|ZP_05260661.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes J0161] gi|254913778|ref|ZP_05263790.1| DNA ligase [Listeria monocytogenes J2818] gi|254938165|ref|ZP_05269862.1| DNA ligase [Listeria monocytogenes F6900] gi|284802202|ref|YP_003414067.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5578] gi|284995344|ref|YP_003417112.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5923] gi|47015969|gb|EAL06895.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 1/2a F6854] gi|258610778|gb|EEW23386.1| DNA ligase [Listeria monocytogenes F6900] gi|284057764|gb|ADB68705.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5578] gi|284060811|gb|ADB71750.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5923] gi|293591794|gb|EFG00129.1| DNA ligase [Listeria monocytogenes J2818] Length = 671 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 246/711 (34%), Positives = 368/711 (51%), Gaps = 53/711 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K L + + YY P + D+EYD + I A P+ P P + Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ KV H P LSL +N EDL F RI K + I + E KIDG Sbjct: 61 VGGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRIRD----KVGDDIAYMCELKIDGL 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 ++++YE GK+ A RGDG GED++A +R I +IP L + IEVRGE ++ K Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 174 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+ G+ +ANPRNAA+G LR+L+ +R L+ F++ + E+ + Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R ++ + +Y +E R+ L YDIDG+V K++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCSSLEEVYAYIDEWTEKRADLAYDIDGIVLKLNNLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D + +DIR+GD VL+K+AG++IP+V+ I ER +PF P CP Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPT 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CDSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L + K+ + G+ SVTNL SI + SLE+ +F Sbjct: 457 Q----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N D +L + +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNL----------KVADKETLTSINDIGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 N +E L + K K +V TG L+K+ R+ A+ + Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667 >gi|328950509|ref|YP_004367844.1| DNA ligase [Marinithermus hydrothermalis DSM 14884] gi|328450833|gb|AEB11734.1| DNA ligase [Marinithermus hydrothermalis DSM 14884] Length = 676 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 240/712 (33%), Positives = 379/712 (53%), Gaps = 51/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E+A+K + L Q I YH+ YY P I D+EYDAL R A+ +PDL P Sbjct: 1 MTREEAKKRVLELRQAIRYHNYRYYVLDDPEISDAEYDALMRELKALEARYPDLV---TP 57 Query: 72 NGPLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P +G G + S ++ H P SL+ +N+E++R+F R+ R + +T+ Sbjct: 58 DSPTQVVGAGMIESSFREIQHPTPLYSLDNAFNLEEVREFEARLERALGRP--GPFEYTV 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG + + YE+G V+ A RG+G +GE+V+ + IP +PR L P +EVRGE Sbjct: 116 EYKIDGLSVNLYYEEGFLVWGATRGNGRTGEEVTQNLLTIPDVPRRLEGA-PARLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VY+ ++ FL LN G P+ NPRNAA+G LR+ +P TR L + +G+G + Sbjct: 175 VYMPRDTFLKLNQAREEAGLPPFKNPRNAAAGSLRQQDPRVTATRGLRAYFYGIGLGLQE 234 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + Q E+L ++ GFPV R GI + Y + R T+P++ DG+V K++ Sbjct: 235 TGVETQAELLDYLKRAGFPVEPHARVVRGVEGIETAYQAFLAQRHTVPFEADGVVVKLNN 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q +LG A+SPRW +++KF ++ TR+L++ Q+GRTG +TPVA LEPV + G + Sbjct: 295 LAWQDELGYTAKSPRWAVAYKFPAEEKKTRVLEVIFQVGRTGRVTPVAVLEPVLLDGTTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + +LHNE Y++ L + +GD VLV +AG +IP+V+ ++ ER +P Sbjct: 355 SRVSLHNEAYLEEL-----------GLMLGDWVLVHKAGGIIPEVLRVLKEERTGTERPL 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP C +V + HRC L C AQ ER++H+ SR A +I+GLG+ Sbjct: 404 VFPDACPACGHALVLE--------GKIHRCPNPL-CPAQAFERIRHYASRRAMDIQGLGE 454 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + IR PAD++ L + S + FG+ S NL I + Sbjct: 455 RHIEQMLEK----GLIRTPADLYRLTKADLVS------LERFGEKSAENLLAQIEASKTR 504 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 LER +F+LGI VG +AR+LA+ + + + L+ V VG++ Sbjct: 505 GLERLLFALGIPQVGEALARTLARRFGTLDRLLEATP----------EELLEVEDVGELT 554 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A+ I E +P + +E L S E+ S + V TG L + R + + Sbjct: 555 ARRIHETLHDPAMLELIEQLRAAGV-SFEAKERPRSDALAGLTFVLTGELSR-PRAEVKR 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA V++ +S+KT ++ G GSKL+KA++LG+ +++E L+QQ Sbjct: 613 RLEALGAKVASAVSKKTSYVVAGAGAGSKLQKARELGIPVLDEAGLEALIQQ 664 >gi|332880018|ref|ZP_08447702.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682014|gb|EGJ54927.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 663 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 230/705 (32%), Positives = 367/705 (52%), Gaps = 49/705 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L +E++ H+ YY P I D E+D + A+ A P+ D N P + Sbjct: 2 KEKIQQLREELNQHNYNYYVLDTPTISDFEFDQKLKELQALEQAHPEY---YDENSPTVR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + + V H SL+ ++ EDL ++ RI + + I FT E K DG Sbjct: 59 VGGTITKNFPTVVHEYRMYSLDNSYSKEDLEEWEQRIIKTLG---SDQINFTCELKYDGA 115 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I + YE GK A RGDG G+D++A +R I ++P L + PE +RGE+ + K Sbjct: 116 SIDLLYENGKLKQATTRGDGIQGDDITANVRTIGSVPLQLKGDYPERFYIRGEIVMPKKA 175 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256 F ALN E +A G P+ NPRN ASG L+ + + R L+ ++ L + K Q+E Sbjct: 176 FEALNKERVAAGEDPFMNPRNTASGSLKLQDTAEVAKRGLDCLLYFL--VGDTGIKSQFE 233 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+K R GF V N + ++ ++ + NE S R TLPY+ DG+V KVD + Q++LG Sbjct: 234 GLEKARAWGFKVPNISKLCHSTAEVMDFINEWDSKRHTLPYETDGVVVKVDSIAQQEELG 293 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++SPRW +++KF +Q T L I Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 294 YTSKSPRWAMAYKFKAEQVDTLLESISYQVGRTGAITPVANLQPVLLAGTIVKRASLHNA 353 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L DI +GD V V++ GE+IPK+V + + +R +A+ + + CP Sbjct: 354 DQIEKL-----------DIHIGDSVYVEKGGEIIPKIVGVNLEKREANAEKVQYITHCPE 402 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + +VR+ A H C +C Q +++HF+SR A +IEGLG++ ++ F+ Sbjct: 403 CGTALVRNEGE------AQHYCPNSNSCPPQITGKIQHFISRKAMDIEGLGEETVELLFR 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 A I AD++ + + K+ + S N+ I K + I ER +F+ Sbjct: 457 ----AGIIHTYADLYEV------TVAKLLPLERMAQKSAENIVKGIEKSKEIPFERVLFA 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR+VG +A+ LA++Y + + LI V +G+ IA ++V F+ Sbjct: 507 LGIRYVGETVAKKLARHYKTIEALEAAT----------IEQLIEVDEIGNQIASSVVSFF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + N +E L + +++ V +G R + + + Q G Sbjct: 557 ADAYNRALIERLKGYGLQFALSEQATEGQTDKLKGLTFVVSGVFHLHSRDELKTLIEQHG 616 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 V + +S KT +IVGDN G SK EKA+ LGVK+++EE+F L+ Sbjct: 617 GKVGSSISSKTSYVIVGDNMGPSKKEKAESLGVKMISEEEFEALI 661 >gi|150021387|ref|YP_001306741.1| DNA ligase, NAD-dependent [Thermosipho melanesiensis BI429] gi|190359297|sp|A6LN55|DNLJ_THEM4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|149793908|gb|ABR31356.1| DNA ligase, NAD-dependent [Thermosipho melanesiensis BI429] Length = 662 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 229/706 (32%), Positives = 377/706 (53%), Gaps = 47/706 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++E+ L +EI YH+ YY + PII D EYD L ++ + +P PN Sbjct: 1 MKNIKEEIERLRKEIEYHNYRYYVLADPIISDEEYDRLLKKLIELEKKYPKF---SSPNS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+GG + KV H+ P LSL+ +N ++++F RI R + NS+ + E K Sbjct: 58 PTQKVGGGVISGFEKVEHTTPMLSLDNTYNETEIKEFDNRIKRLLNR---NSVEYVCELK 114 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++IRYE G+F A RG+G G+D++ ++ I +IP L IEVRGE+++ Sbjct: 115 IDGISVSIRYENGEFRQAISRGNGIIGDDITENVKKIKSIPLRLFKKY--TIEVRGEIFM 172 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAK 252 +F N G +P+ANPRNAA+G +R+L+ + R L+ F++ + K Sbjct: 173 PIKEFEKYNKIAEEEGLQPFANPRNAAAGTIRQLDSSIVAKRNLDSFIYYIVNPENYSLK 232 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q+E L ++ LGF VN I+ ++ +M R L Y IDGLV KV+ F Q Sbjct: 233 TQWEALDFLKKLGFKVNRQSILCKNVECIIDFWKKMTKERKNLDYWIDGLVIKVNNFEFQ 292 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 K LGE ++SPRW I+ KF + T+++D+++ +GR+GI+TPVA EP+++ G ++ A+ Sbjct: 293 KILGETSKSPRWAIAFKFPAIKKKTKIIDVELNVGRSGIITPVAIFEPIDLDGTIVKRAS 352 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN +YI+ +DIR+GD V +++AG +IP+VV ++ +R + P Sbjct: 353 LHNFEYIQ-----------DKDIRIGDYVYIEKAGGIIPQVVSVVKEKRTGLEKEIKIPK 401 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C V K + A RC C + L+ FVS+ AF+I G+G++ +D Sbjct: 402 SCPVCNGPVG-----KLTEDEIAIRCLNP-HCPQKLKRHLEIFVSKSAFDISGIGEKIID 455 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++ I+ ADIF L + + I G G S+ + + I K + L R Sbjct: 456 KIVDAK----LIKDIADIFYL------TPFDLAQISGLGQKSIAKILEQIEKSKKTPLNR 505 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 I LGI VG + ++ LA+ + + + + + LI++ +G IA++I Sbjct: 506 VIVGLGIPMVGEKTSKILAEKFKNIEKLSSAT----------YDELIKIENIGPEIAKSI 555 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 V ++QN + + L K ++ + S +++ TG L+ R + ++ + + Sbjct: 556 VTYFQNEKTKEIINKLKKAGV-NLEEKDVKKSDKLKGLTFAITGKLKSYTREEIKKIIEE 614 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G VS +S KT+ +I G+ PGSKLEKA++L +KI++EE FL L+ Sbjct: 615 NGGKVSNSVSSKTNFLIAGEEPGSKLEKAKRLNIKIISEEDFLKLI 660 >gi|16803798|ref|NP_465283.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes EGD-e] gi|224499523|ref|ZP_03667872.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes Finland 1988] gi|224503316|ref|ZP_03671623.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL R2-561] gi|81508669|sp|Q8Y6D0|DNLJ_LISMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|16411212|emb|CAC99836.1| lmo1758 [Listeria monocytogenes EGD-e] Length = 671 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 246/711 (34%), Positives = 368/711 (51%), Gaps = 53/711 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K L + + YY P + D+EYD + I A P+ P P + Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ KV H P LSL +N EDL F RI K + I + E KIDG Sbjct: 61 VGGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRIRD----KVGDDIAYMCELKIDGL 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 ++++YE GK+ A RGDG GED++A +R I +IP L + IEVRGE ++ K Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 174 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+ G+ +ANPRNAA+G LR+L+ +R L+ F++ + E+ + Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R ++ + +Y +E R+ L YDIDG+V K++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCSSLEEVYAYIDEWTEKRADLAYDIDGIVLKLNNLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D + +DIR+GD VL+K+AG++IP+V+ I ER +PF P CP Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKKCPT 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CDSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L + K+ + G+ SVTNL SI + SLE+ +F Sbjct: 457 Q----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N D +L + +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNL----------KVADKETLTSINDIGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 N +E L + K K +V TG L+K+ R+ A+ + Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667 >gi|255026038|ref|ZP_05298024.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J2-003] Length = 671 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 247/711 (34%), Positives = 367/711 (51%), Gaps = 53/711 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K L + + YY P + D+EYD + I A P+ P P + Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ KV H P LSL +N EDL F RI K + I + E KIDG Sbjct: 61 VGGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRIRD----KVGDDIAYMCELKIDGL 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 ++++YE GK+ A RGDG GED++A +R I +IP L + IEVRGE ++ K Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 174 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+ G+ +ANPRNAA+G LR+L+ +R L+ F++ + E+ + Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R N+ + +Y E R+ L YDIDG+V K++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D + +DIR+GD VL+K+AG++IP+V+ I ER +PF P CP Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKKCPT 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CDSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L + K+ + G+ SVTNL SI + SLE+ +F Sbjct: 457 Q----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N D +L + +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNL----------KVADKETLTSINDIGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 N +E L + K K +V TG L+K+ R+ A+ + Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667 >gi|16800936|ref|NP_471204.1| NAD-dependent DNA ligase LigA [Listeria innocua Clip11262] gi|81526387|sp|Q92AQ0|DNLJ_LISIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|16414371|emb|CAC97100.1| lin1870 [Listeria innocua Clip11262] Length = 671 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 245/711 (34%), Positives = 366/711 (51%), Gaps = 53/711 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K L + + YY P + D+EYD + I A P+ P P + Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ KV H P LSL +N +DL F RI K + I + E KIDG Sbjct: 61 VGGEVLEGFKKVEHDTPMLSLANAFNRDDLADFDRRIRD----KVGDDISYMCELKIDGL 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 ++++YE GK+ A RGDG GED++A +R I +IP L IEVRGE ++ K Sbjct: 117 AVSLQYENGKYKQGATRGDGTVGEDITANLRTIRSIPMKLKKAYS--IEVRGEAFMPKRS 174 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+ G+ +ANPRNAA+G LR+L+ +R L+ F++ + E+ + Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R + + +Y +E R+ L YDIDG+V K++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCSNLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D + +DIR+GD VL+K+AG++IP+V+ I ER +PF P CP Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEERTGSEKPFHMPKNCPT 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CDSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L + K+ + G+ SVTNL SI + SLE+ +F Sbjct: 457 ----MHLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N D +L + +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNL----------KIADKETLTSINDIGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 N +E L + K K +V TG L+K+ R+ A+ + Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLENMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667 >gi|323344237|ref|ZP_08084463.1| NAD-dependent DNA ligase LigA [Prevotella oralis ATCC 33269] gi|323094966|gb|EFZ37541.1| NAD-dependent DNA ligase LigA [Prevotella oralis ATCC 33269] Length = 665 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 214/706 (30%), Positives = 350/706 (49%), Gaps = 48/706 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ +S L Q++ H+ YY + P I D +D + + +P + +DPN P + Sbjct: 4 KQRISELRQQLHEHNYKYYVLNAPTISDQAFDFMMHELQDLEAKYP---KMDDPNSPTKR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++N +V H P LSL +N +D+ ++ ++ R E K DG Sbjct: 61 VGSDLNSEFKQVAHKYPMLSLANTYNEQDVEEWFEQVARGLM---GEEFEVCCELKYDGL 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKN 196 I++ Y G+ V RGDG G+DV+ ++ I IP VLS N P E+RGE+ + Sbjct: 118 SISLTYVDGQLVQGVTRGDGIHGDDVTENVKTIRAIPLVLSGNDYPHEFEMRGEILMPWK 177 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN E A +ANPRNAASG L+ LN + ++ G YE Sbjct: 178 VFEQLNAEREANEEPLFANPRNAASGTLKSLNSRLVASRHLDSYLYYMLGEQLPTDGHYE 237 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + K + GF ++ G+R+ + I + + R LP DG+V KV+ Q+ LG Sbjct: 238 NMMKAKHWGFKISAGMRKVKSLQQIYDFIKHWDTERKNLPIATDGIVLKVNSLRQQRALG 297 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW I++KF ++A T+L+++ Q+GRTG +TPVA +EPV + G + ATL+N Sbjct: 298 YTAKSPRWAIAYKFKAERACTKLVEVTYQVGRTGAVTPVANMEPVKLAGTTVKRATLNNA 357 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+IK D+ VGD V V++ GE+IPK+V + +++R DA+P SF + CP Sbjct: 358 DFIKSF-----------DLHVGDYVYVEKGGEIIPKIVGVALDKRPADAKPISFITHCPE 406 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + + R AA+ C AC Q R++HF++R A NI+ +G + +D +++ Sbjct: 407 CGTPLARYEGE------AAYYCPNDTACPPQIKGRIEHFIARKAMNIDSIGPETVDDYYR 460 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I AD++ + + G + S + I + + ER +F+ Sbjct: 461 R----GLIHNAADLYNITVQDING-------AGNREKSALKIVRGIASSKQVPFERVVFA 509 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG AR +A+++ + + L V VG++IA++++ ++ Sbjct: 510 LGIRFVGETSARLIARHFKNIDALMEA----------SLQDLTEVEGVGEVIAKSVIAYF 559 Query: 617 QNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 NP N V L + S ++ K +V +G R + + + Q G Sbjct: 560 SNPINKEIVARLRNYGLQMALSEEQQAGSSDKLTGKSIVISGVFTHHSRDEYKALIEQNG 619 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 +S KT ++ GDN G SKLEKA++LGV I++E+ FL +++ Sbjct: 620 GKNVGSISGKTSFVLAGDNMGPSKLEKAERLGVPIISEDDFLKMIE 665 >gi|171914081|ref|ZP_02929551.1| DNA ligase, NAD-dependent [Verrucomicrobium spinosum DSM 4136] Length = 669 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 242/714 (33%), Positives = 372/714 (52%), Gaps = 48/714 (6%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 + P AL E A ++ L +EI +H+ YYQ + P I D +DAL R + A P L Sbjct: 1 MPPAAAL--ETASLRVAHLREEIEHHNRLYYQNAAPEISDQAFDALLRELQDLEKAHPSL 58 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 P+ P ++GG ++ H +P +SL+ ++ E++R F R+ + ++ Sbjct: 59 I---TPDSPTQRVGGTPLDGFKQIAHPVPMMSLDNTYSEEEMRDFFQRLVKGLGRE---K 112 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + T+EPK+DG + +RYE G YAA RGDG G+D++ +R I +P L +P+ Sbjct: 113 VRCTIEPKVDGVAVAVRYEAGALKYAATRGDGRMGDDITQNLRTIRALPLRLPAKVPQTF 172 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY+++ F +N E G +ANPRNA +G L++L+P R L +G+G Sbjct: 173 EVRGEVYMTRAGFDKMNQEREEAGEPRFANPRNATAGSLKQLDPRLVAKRPLQVIFYGVG 232 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 E Q ++ + + G P+ + A + +++ +++ R LPYD DG V Sbjct: 233 DVGEARLTSQDDIHKLLHDAGLPMAAHIWHAESADEVIAAIHQLDEKRKALPYDTDGAVV 292 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD F+ Q+ LG +++PRW I++K+ +QA TRLL +DIQ+GRTG LTPVARL PV + Sbjct: 293 KVDAFAEQRDLGATSKAPRWAIAYKYQPEQAETRLLSVDIQVGRTGALTPVARLVPVFLS 352 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G+ ++NATLHN + I +DIRVGD V++++AGE+IP VV + +R + Sbjct: 353 GSTVSNATLHNFEEI-----------VRKDIRVGDFVIIEKAGEIIPAVVAVNKEKRTGE 401 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + P CP+CQS VV+D A RCT C Q RL+HF R A +I Sbjct: 402 EKEVPVPVHCPVCQSPVVKDE------AQVAIRCTNP-NCPEQVKRRLEHFTHRGAMDIR 454 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG+Q + A PAD++ L +T + + G S+ NL + + Sbjct: 455 GLGEQMVAQLVD----AHLAITPADLYDL------NTHALSKLERQGAKSIENLLKGLEE 504 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + + R IF LGI HVGA ARSL ++ + A+ L++V + Sbjct: 505 SKKQAPWRLIFGLGILHVGASSARSLMDHFGAVDALARA----------SVEDLLKVQDI 554 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G I+AQ+I ++Q P N ++ L + S V TGTL + R Sbjct: 555 GGIVAQSIHGWFQVPANQALLDRLRSSGLQFDNPKTEQASDTFAGTSWVITGTLSE-SRE 613 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 E + G + + +S KT ++ G+ GSKLEKA +LGVK+++E F +L Sbjct: 614 VIAELIRTHGGKMVSSVSSKTTYLLAGEEAGSKLEKAAKLGVKVLSEADFRAML 667 >gi|319955749|ref|YP_004167016.1| DNA ligase [Cellulophaga algicola DSM 14237] gi|319424409|gb|ADV51518.1| DNA ligase [Cellulophaga algicola DSM 14237] Length = 666 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 217/708 (30%), Positives = 352/708 (49%), Gaps = 48/708 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 ++++++ +L + H+ YY P I D ++D + + P+ D P Sbjct: 2 ESKQKIEALRIGLREHNYNYYVLDTPTISDYDFDMQLKELQDLEEKHPEF---YDATSPS 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + + + H SL+ ++ EDL ++ RI R D + FT E K D Sbjct: 59 LRVGGMVTKNFKTIVHDSRMYSLDNSYSKEDLEEWEKRIQRNLG---DVPVAFTCELKYD 115 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I+I YE G+ V A RGDG G+DV+ I+ I +IP L + P ++RGE+ + Sbjct: 116 GASISITYENGQLVRALTRGDGFQGDDVTNNIKTIKSIPLQLKGDYPPKFDIRGEIVLPF 175 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 F +N E I G PY NPRN ASG L+ + R L ++G+ + + Q Sbjct: 176 EGFAKMNAERIENGEDPYMNPRNTASGSLKLQDSALVAQRPLECLLYGIV-GEKTGIESQ 234 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 ++ML+K R GF V + + ++++ R LPY+ DG+V KV+ Q++ Sbjct: 235 FQMLEKARVWGFKVPTVAQLCKSTDEVMAFVEYWDIHRHELPYETDGVVIKVNSLQYQEE 294 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++SPRW +++KF +Q +T L +I Q+GRTG +TPVA L PV + G + A+LH Sbjct: 295 LGYTSKSPRWAMAYKFKAEQVATLLNEITYQVGRTGAITPVANLVPVLLAGTTVKRASLH 354 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I DIR GD V V++ GE+IPK+V + +R ++ P + C Sbjct: 355 NADQIAKF-----------DIREGDTVFVEKGGEIIPKIVGVDFAQRPSNSVPTKYIDHC 403 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + + + + A H C C Q R++H++SR A +IEGLG + + Sbjct: 404 PECNAEL------ERAEGDAKHFCPNFYGCPPQITGRIQHYISRKAMDIEGLGGETVALL 457 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 +K + I+ AD++TL + Q + S NL + + +I ER + Sbjct: 458 YKEQ----LIKNYADLYTLTKEQVM------PLERMAGKSAENLVNGVKASVSIPFERVL 507 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG +A+ LAK Y + L++V +G+ IA ++VE Sbjct: 508 FALGIRFVGETVAKKLAKAYKNIDAL----------KVASVEELVKVDEIGERIANSVVE 557 Query: 615 FYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F+QN N +E L +N + E++ + V +G +K+ R + ++ + Sbjct: 558 FFQNETNQETIERLKSYGVQFELSADKLENQTEELKGQIFVVSGVFEKVSRDELKKLIED 617 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 G V + +S KT ++ GD G SK KA+ LGV I++E++FL LL Sbjct: 618 NGGKVGSSVSSKTTFLVAGDKMGPSKRTKAESLGVAIISEDEFLALLA 665 >gi|16329180|ref|NP_439908.1| NAD-dependent DNA ligase LigA [Synechocystis sp. PCC 6803] gi|7674015|sp|P72588|DNLJ_SYNY3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|1651660|dbj|BAA16588.1| DNA ligase [Synechocystis sp. PCC 6803] Length = 669 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 228/696 (32%), Positives = 366/696 (52%), Gaps = 49/696 (7%) Query: 30 YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89 YY P++ DS YD L R + P+L P+ P ++G + V Sbjct: 16 KASYAYYVLDAPVMEDSVYDQLYRELQRLEAENPELI---TPDSPTQRVGEQPASQFRSV 72 Query: 90 THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149 H+IP SLE +N+++L+++ R R + E KIDG+ I + YE G V Sbjct: 73 AHNIPLYSLENAFNVQELQQWQERWQRI--APTIEKAEYVCELKIDGSAIALTYENGLLV 130 Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDFLALNDEMIAV 208 RGDG +GE++S I+ I +IP L+ N P +EVRGE ++ +F +N E A Sbjct: 131 RGVTRGDGTTGEEISQNIKTIRSIPVKLNLDNPPPTVEVRGEAFLPLEEFNRINHEREAQ 190 Query: 209 GRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF-AKGQYEMLQKMRCLGF 266 G +ANPRNAA+G LR+L+P + + FF + L + + Q++ L+ ++ GF Sbjct: 191 GESLFANPRNAAAGTLRQLDPKIVHQRRLQFFAYTLHLPGQEDKIQSQWQALEYLKKAGF 250 Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 VN + +V+Y+ + + R LPY DG+V K++++ LQ++LG + PRW I Sbjct: 251 MVNPHCQLCKGLDEVVAYFEDWEGARQRLPYMTDGVVVKINQYPLQRELGFTQKFPRWAI 310 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386 + K+ ++ T + I++ +GRTG +TP+A +EPV + G + ATLHN+D I+ L Sbjct: 311 ALKYPAEETPTVVKAIEVNVGRTGAVTPLAVMEPVQLAGTTVQRATLHNQDRIQEL---- 366 Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446 DIRVGD V++++AGE+IP+VV ++ R + P+ FPS CP C S +VR L Sbjct: 367 -------DIRVGDTVIIRKAGEIIPEVVRVMTELRPENTTPYIFPSHCPACGSPLVRPLE 419 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506 A RC +CSA L H+ SR+A +I+GLG++ + ++ + Sbjct: 420 E------AVIRCVNS-SCSAILQGSLIHWASRNALDIQGLGEKVVITLLENR----LVNS 468 Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 AD++ LQ Q + F S L +I ++ R +F LGIRHVG Sbjct: 469 VADLYGLQVEQLLG------LERFAQKSAEKLIAAIEVSKSQPWSRILFGLGIRHVGQVN 522 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 A+ L++ + + + +Q L V +G IA+A+V +++NP N ++ Sbjct: 523 AKLLSQQFPTVEKLSQA----------SIPDLEGVYGIGPEIAEAVVNWFRNPGNQQLIQ 572 Query: 627 ALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 L + + K S +++ K V TGTL + R +AQE + Q G V++ +S Sbjct: 573 DLEELGLVLANQGIDQTKTDSGKLKGKTFVLTGTLPNLSRLEAQELIEQSGGKVTSSVST 632 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 KTD +++GD PGSK KA+ LG+K+++E +FL LL+ Sbjct: 633 KTDYVLLGDKPGSKAAKAESLGIKLLSEAEFLQLLE 668 >gi|315303635|ref|ZP_07874170.1| DNA ligase, NAD-dependent [Listeria ivanovii FSL F6-596] gi|313627998|gb|EFR96596.1| DNA ligase, NAD-dependent [Listeria ivanovii FSL F6-596] Length = 678 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 246/711 (34%), Positives = 371/711 (52%), Gaps = 53/711 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K L + + YY P + D+EYD + I A P+ P P N+ Sbjct: 11 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLQIEAAHPEWV---TPESPSNR 67 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ KV H P LSL +N +DL F RI K + + E KIDG Sbjct: 68 VGGEVLEGFQKVAHDTPMLSLANAFNKDDLADFDRRIRD----KVGEDVAYMCELKIDGL 123 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 ++++YE GK+ A RGDG +GED++A +R I +IP L + IEVRGE ++ K Sbjct: 124 AVSLQYENGKYKQGATRGDGTTGEDITANLRTIRSIPMKLQKSYS--IEVRGEAFMPKRS 181 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+ G+ +ANPRNAA+G LR+L+ +R L+ F++ + E+ Sbjct: 182 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVTTHSA 241 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R +T + +Y +E R+ L YDIDG+V K+++ Q+Q+G Sbjct: 242 GLAMLETLGLKVNKERRLCSTLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNDLEQQRQMG 301 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G + A+LHNE Sbjct: 302 TTAKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVVTPTAVLEPVRVAGTTVGRASLHNE 361 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D + +DIR+GD VL+K+AG++IP+V+ I ER D +PF P+ CP Sbjct: 362 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSIAEERTGDEEPFHMPANCPT 410 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 411 CGSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFT 463 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L + K+ + G+ SVTNL SI + + SLE+ +F Sbjct: 464 H----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEQSKQNSLEKLLFG 513 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA Y+ + D +L R+ +G+ +A +IV ++ Sbjct: 514 LGIRHVGAKAAKSLAIYFETMDKLKLA----------DKETLTRINDIGEKMADSIVTYF 563 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 N ++ L + K K +V TG L+++ R+ A+ + Sbjct: 564 ANEEVHNLLDELKRAGVNMTYTGPKLDDMSEEELVFAGKTVVLTGKLEQLTRNDAKALIE 623 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LG VS +S+KTD+++ G + GSKL KA++L + I +E + L Sbjct: 624 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSENDLIEYLPDEG 674 >gi|303231514|ref|ZP_07318244.1| DNA ligase (NAD+) [Veillonella atypica ACS-049-V-Sch6] gi|302513857|gb|EFL55869.1| DNA ligase (NAD+) [Veillonella atypica ACS-049-V-Sch6] Length = 666 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 228/708 (32%), Positives = 371/708 (52%), Gaps = 46/708 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L++E+++ YY P + D EYD R + A P+ P+ P + Sbjct: 4 KDRIEQLQKELTHAQYLYYVKDNPTMSDFEYDQKYRELVDLETAHPEYIV---PSSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + + KV H P LSL +++ +++R F R+ + + + +E KIDG Sbjct: 61 VGIKADGPFEKVVHGRPMLSLSNVFSADEVRAFDQRVTKELG---HQTKAYVVELKIDGL 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G FV A RGDG GEDV+A +R I +IP L N PE IE+RGE Y+ ++ Sbjct: 118 AVNLHYENGIFVRAVTRGDGKVGEDVTANVRTIKSIPLYL-ENAPEFIEIRGEAYMPHSE 176 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N+E G + NPRNAA+G LR+ +P +R L FF + +G S Q E Sbjct: 177 FKRINEERDEEGVPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSESGANIHTQEE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L + F VN R NT ++ N R LPYD DG+V KV++F+ Q+ LG Sbjct: 237 LLHTLENFHFSVNPHYRVCNTIDEVIEAINYWGEKRHELPYDTDGMVIKVNDFNDQEMLG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ P+W ++K+ ++ T + DI I +GRTG+LTP LEPV + G ++ TLHN+ Sbjct: 297 STAKDPKWATAYKYPPEEVETVVKDITINVGRTGVLTPTGELEPVFVSGTNVSRVTLHNQ 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+I +DIR+GD VL+ +A E+IP+V+ ++ +R PF+ P+ CP+ Sbjct: 357 DFI-----------TEKDIRIGDHVLIHKAAEIIPEVIRVLPEKRTGSEVPFTIPNRCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C+S VR AA RCT C A + E++ HF SRDA NI+GLG ++ Sbjct: 406 CESPAVRREGE------AAIRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + I D++ L G S NL +I ++ L+R +F Sbjct: 459 EK----LITNVVDLYHLTTESIMGM------DRMGKKSADNLVKAIADSKSRGLDRVLFG 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR +G++ A ++A S F L+ V +G +A +I+E+ Sbjct: 509 LGIRLIGSKAAGTIANVVKSMDRFLTISK----------DELVAVEEIGPTMADSIIEYR 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 ++P++I + +L++ ++ +E+E + +V TG L+ + R +A + + + GA Sbjct: 559 EDPQHIKIINSLIEAGLKMDVDVQEAAGNEMEGEIVVLTGKLEVMGRSEAGKLLEKHGAK 618 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 V+ +S+KT +++ G++ GSKL KA +LG++++NEE+F+ LL+ Sbjct: 619 VTGSVSKKTTLVVAGEDSGSKLTKANELGIRVINEEEFIELLKDLGEN 666 >gi|154492286|ref|ZP_02031912.1| hypothetical protein PARMER_01920 [Parabacteroides merdae ATCC 43184] gi|154087511|gb|EDN86556.1| hypothetical protein PARMER_01920 [Parabacteroides merdae ATCC 43184] Length = 666 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 224/709 (31%), Positives = 353/709 (49%), Gaps = 50/709 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 + ++ +L + + H+ YY S P I D E+D + + + + P+ A DP+ P Sbjct: 3 VKDKIKALREALEQHNYNYYVLSAPTISDREFDEMMKELQVLEESHPEYA---DPHSPTQ 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G +++ +V H P LSL ++ ++++ F RI R + E K DG Sbjct: 60 RVGSDLSKEFEQVVHKYPMLSLGNTYSEDEVKDFYERIARDL----NEPFEIVAELKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195 T I++ YE G+ V A RGDG G+DV+A ++ I ++P L P E+RGE+ + Sbjct: 116 TSISLTYEDGRLVRAVTRGDGTRGDDVTANVKTIRSVPLKLMGDRYPATFEIRGEILLPW 175 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 +F LN E +ANPRNAASG L++ NP + E+ A+ + Sbjct: 176 AEFDRLNKEREEQEEPLFANPRNAASGTLKQQNPAVVAARKLDAYFYYLLGEELPAETHF 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + L+ R GF + N +R N+ I Y R LP DG+V KV+ Q+ L Sbjct: 236 DNLEAARSWGFKIPNVIRVCNSLEDIYGYIAYWDVERKNLPVATDGIVLKVNSLRQQRNL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA LEPV + G + A+LHN Sbjct: 296 GFTAKSPRWAIAYKFQAERAVTRLNSVSFQVGRTGAVTPVANLEPVLLAGTTVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFC 434 D I+GL D+ +GD+V V++ GE+IPK+V + V R F C Sbjct: 356 ADIIEGL-----------DLHLGDKVFVEKGGEIIPKIVGVDVEARGLLVGDKVRFIRSC 404 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + ++R AAH C C Q +++HFV+R A NI + Sbjct: 405 PECGTPLMRPEGE------AAHYCPNEAGCPPQIKGKIEHFVTRRAMNINMGPET----- 453 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + A I+ AD++TL+ + + + D S NL S+ + + + ER + Sbjct: 454 VEDLYEAGYIKDTADLYTLEIAD------LLRLERWADKSARNLMASLEESKQVPFERVL 507 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + LGIR VG +A+ L + S + Q + L V +G+ IA++I+ Sbjct: 508 YGLGIRFVGETVAKRLVSAFHSMEQLEQA----------SFEDLTAVDEIGERIARSIIA 557 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 ++ + RN V L + EK N S +++ +V +GT K R + + + Q Sbjct: 558 YFADERNRTLVNRLKEYGLQMSVPEEKLANRSEKLKGLSIVISGTFAKHSRDEYKAMIEQ 617 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 G S +S KTD I+ GDN G +KLEKA +LGVKI+NE++FL ++ + Sbjct: 618 HGGKNSGSVSGKTDYILAGDNMGPAKLEKAAKLGVKIINEDEFLNMIAE 666 >gi|150005810|ref|YP_001300554.1| DNA ligase [Bacteroides vulgatus ATCC 8482] gi|237725408|ref|ZP_04555889.1| DNA ligase [Bacteroides sp. D4] gi|319640984|ref|ZP_07995691.1| DNA ligase [Bacteroides sp. 3_1_40A] gi|166215396|sp|A6L5G8|DNLJ_BACV8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|149934234|gb|ABR40932.1| DNA ligase [Bacteroides vulgatus ATCC 8482] gi|229436095|gb|EEO46172.1| DNA ligase [Bacteroides dorei 5_1_36/D4] gi|317387362|gb|EFV68234.1| DNA ligase [Bacteroides sp. 3_1_40A] Length = 665 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 232/705 (32%), Positives = 356/705 (50%), Gaps = 48/705 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L +E+ H+ YY + P I D E+D L R + P+ D N P ++ Sbjct: 5 ERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G ++N + +V H P LSL ++ ++ +F R+ + + E K DGT Sbjct: 62 GSDINKNFTQVVHKYPMLSLANTYSETEVTEFYDRVKKSL----NEDFEICCEMKYDGTS 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKND 197 I++ YE GK V A RGDG G+DV+ ++ I +IP VL PE E+RGE+ + Sbjct: 118 ISLTYENGKLVRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPETFEIRGEILMPWVV 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F LN E A +ANPRNAASG L+ N + + G YE Sbjct: 178 FEELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPCDGHYEN 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L++ GF +++ R+ T + + R LP DG+V KV+ Q+ LG Sbjct: 238 LKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGF 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+SPRW I++KF +QA TRL + Q+GRTG +TPVA L+P+ + G ++ A+LHN D Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPIQLSGTVVKRASLHNAD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+GL D+ +GD V V++ GE+IPK+V + + R F + CP C Sbjct: 358 IIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKDARIMIGDKVKFITHCPEC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S++VR AA+ CT AC Q +++HF+SR A NI+GLG + +D F++ Sbjct: 407 GSKLVRYEGE------AAYYCTNDAACPPQIKGKIEHFISRRAMNIDGLGPETVDQFYQE 460 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 IR AD++TL T+ I N+ G+ S N+ I + + + ER +F+L Sbjct: 461 ----GLIRDVADLYTL------KTSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFAL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR VG +A+ +AK + S A +LI V +G+ IAQ+I+ ++ Sbjct: 511 GIRFVGETVAKKVAKSFKSMDALADA----------SLDNLIHVDEIGEKIAQSILLYFA 560 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 NP+N +E L E ++ K +V +G R + +E + + G Sbjct: 561 NPKNRDIIERLRVAGVRLEADEEDTSEHTDKLAGKSIVISGVFAHHSRDEYKELIEKHGG 620 Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 +S KT I+ GDN G SKLEKAQ+LGV I++EE+FL +++ Sbjct: 621 KNVGSISSKTSFILAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665 >gi|296285034|ref|ZP_06863032.1| DNA ligase [Citromicrobium bathyomarinum JL354] Length = 733 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 275/753 (36%), Positives = 410/753 (54%), Gaps = 74/753 (9%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E LS +A EL L + I H+ Y+ P I D EYDAL RR +A+ AFPDL R Sbjct: 9 EPLSEAEAANELMRLARTIRKHNRLYHAEDAPEITDQEYDALVRRNEALEAAFPDLVR-- 66 Query: 70 DPNGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ P +G E+ L KVTH++ +SL+ +N E++ +++ R+ RF + D I F Sbjct: 67 -PDSPSKGVGHEVAGSPLSKVTHAVRMMSLDNAFNGEEVGEWVARVRRFLDLEVDTPIAF 125 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T E KIDG ++RYEKG+ V AA RGDG GEDV+A + I IP L+ + P++ EVR Sbjct: 126 TAEDKIDGLSCSLRYEKGQLVRAATRGDGQVGEDVTANVAHIADIPAQLTGDAPDVFEVR 185 Query: 189 GEVYISKNDFLALNDEMIAV---------------GRKPYANPRNAASGILRRLNPT-DI 232 GEVY+ + F LN ++ + +ANPRNAA+G LR+ + + Sbjct: 186 GEVYMERAAFADLNTRLMDEARAAASEKGEEFDPAKARQFANPRNAAAGSLRQKDASVTA 245 Query: 233 TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR 292 R L F+ HG G+ S++ + Q ++++ + G PV+ + ++ +Y + S R Sbjct: 246 KRPLRFWAHGWGEASQVPGETQTDVIRAIEAFGLPVSPQFTRVEGLDALLDHYETIASAR 305 Query: 293 STLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352 LPY+IDG+VYKVD Q++LG A++PRW ++HKF ++A T L IDIQ+GRTG L Sbjct: 306 PDLPYEIDGVVYKVDRLDWQERLGFVAKAPRWALAHKFPAERAETTLEAIDIQVGRTGKL 365 Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412 TPV RL PV +GG +TN TLHN D I L +RVGDRVL++RAG+VIP+ Sbjct: 366 TPVGRLAPVLVGGVTVTNVTLHNRDEIARL-----------GLRVGDRVLIQRAGDVIPQ 414 Query: 413 VVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472 VV+ + + + F FP CP C S V + + RCTGGL C AQ+LER+ Sbjct: 415 VVENLTPD--AQRERFEFPETCPECGSEAVAEEDE------VDVRCTGGLICPAQRLERM 466 Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGD 532 KHFVSR A +IEG+G++ + F + + PADIF L++R+ +I + G+ D Sbjct: 467 KHFVSRGALDIEGMGEKTIAEFLER----GWLESPADIFRLRKRRD----EILALEGWQD 518 Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF------------ 580 SV NL +I +R R +F LGIRHVGA AR L K + Sbjct: 519 KSVDNLLAAIEAKRAPDAARLLFGLGIRHVGAVTARDLLKGLGDIRKLPGKAAEFHRYRI 578 Query: 581 ------AQEINNIIAHNNDDWLSLIRV--PLVGDIIAQAIVEFYQNPRNICAVEALLK-- 630 ++++ A D + V +G + A+ +F+ N + L+ Sbjct: 579 ENPRGEDEKVSPFNARMLDAVRRIYEVRADGIGTAVGHALADFFHEEHNRQVWDDLIGAE 638 Query: 631 ----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 EV P + E V S + K +VFTG L+ + R +A+ +LGA + +S KTD Sbjct: 639 PGAGEVDPPVYEVE-TVESPVAGKTVVFTGKLETMSRDEAKAQAERLGAKAAGSVSAKTD 697 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +++ G GSKL+KA++LG+++++E + ++ Sbjct: 698 LLVAGPGAGSKLKKAEELGIEVIDEAGWTEIVA 730 >gi|332884007|gb|EGK04287.1| DNA ligase [Dysgonomonas mossii DSM 22836] Length = 665 Score = 532 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 216/710 (30%), Positives = 349/710 (49%), Gaps = 49/710 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++Q + ++ +L +E++ H+ YY S P I D E+D + + +P+ DPN Sbjct: 1 MDQIKHQIDTLREELNKHNYDYYVLSAPTISDFEFDKKLKELTDLETQYPEYF---DPNS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G ++N S +V H P LSL + ++ F R+ + ++ E K Sbjct: 58 PSQRVGSDINKSFKQVPHKYPMLSLGNTYTEAEITDFYNRVKKGL----NDDFDIVCELK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 DGT I++ Y G+ A RGDG G+DV+A +R I +IP L P E+RGE+ Sbjct: 114 YDGTSISLTYINGQLTQAVTRGDGVQGDDVTANVRTIRSIPLRLHGAGYPAEFEIRGEIL 173 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + + F +N E +ANPRNA SG L++ +P + ++ Sbjct: 174 MPWSVFDDINKERAEQEEALFANPRNAGSGTLKQQDPKIVASRKLDSYLYYLLGEDLPTD 233 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 G YE L K + GF +++ ++ T I +Y + R LP DG+V KV+ + Q Sbjct: 234 GHYENLIKAKEWGFKISDATKKCKTLDEIFAYIHYWDKERKNLPVATDGIVLKVNSLTQQ 293 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 K LG ++ PRW I+ KF +QA T L + Q+GRTG +TPVA L PV + G + A+ Sbjct: 294 KNLGFTSKFPRWAIAFKFQAEQAVTTLESVSYQVGRTGAITPVANLRPVKLSGTTVKRAS 353 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 L+NEDYI L D+ + D+V V++ GE+IPK+ + V +R+ F Sbjct: 354 LYNEDYINSL-----------DLHINDQVYVEKGGEIIPKITGVDVAQRNIFDAKVEFIK 402 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + +V+D A + C ++C Q R++HF++R A NI G + Sbjct: 403 DCPECGTPLVKDEGE------AIYYCPNDVSCPPQIKGRIEHFLTRKAMNIAGGTET--- 453 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + A IR AD++TL + + + + S NL DSI+ ++ ER Sbjct: 454 --VEHLYNAGYIRNIADLYTL------KWQDVSRLERWAEKSAKNLIDSIHASVSVPYER 505 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F+LGIR+VG +A+ LA + L +V +GD IAQ+I Sbjct: 506 VLFALGIRYVGETVAKKLALAFPDIDLLQAAT----------IEDLTQVDEIGDRIAQSI 555 Query: 613 VEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 V+++ NP N+ + L + +++ +V +GT +K R + + + Sbjct: 556 VKYFSNPNNLEVINKLRTFGLRFELSESIIAQRTEKLKGLSIVISGTFEKYSRDEYKSMI 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 Q G S +S KT ++ GDN G +KLEKA+ LG+ I+NE+ FL +L+ Sbjct: 616 EQNGGKNSGSISSKTSYVLAGDNMGPAKLEKAKSLGIPIINEDDFLKMLE 665 >gi|319762938|ref|YP_004126875.1| DNA ligase, nad-dependent [Alicycliphilus denitrificans BC] gi|330825018|ref|YP_004388321.1| DNA ligase [Alicycliphilus denitrificans K601] gi|317117499|gb|ADU99987.1| DNA ligase, NAD-dependent [Alicycliphilus denitrificans BC] gi|329310390|gb|AEB84805.1| DNA ligase, NAD-dependent [Alicycliphilus denitrificans K601] Length = 717 Score = 532 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 250/736 (33%), Positives = 381/736 (51%), Gaps = 73/736 (9%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ +L +++ YY +P + D+EYD + ++ A+ A+P L P+ P ++ Sbjct: 22 KVEALRAQLNQWAHEYYVLDEPSVPDAEYDRVFQQLQALEGAYPALV---TPDSPTQRVI 78 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQK-KDDNSIFFTLEPKIDG 136 G + L V H + LS+ + E F RI R + +D + + EPK DG Sbjct: 79 GAVMNGLAPVRHRVAMLSIRTETDTEASGAEAFDARIRRELKLAPEDPPVEYVAEPKFDG 138 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---------------------- 174 +++RYE G+ V AA RGDG GEDV+ IR I IP Sbjct: 139 LAMSLRYEHGRLVQAATRGDGEVGEDVTHNIRTIRQIPLTLQLSAPTLGADASSLPPEGA 198 Query: 175 -----RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP 229 R P ++EVRGEVY+ + DF LN+ G K + NPRNAA+G +R+L+ Sbjct: 199 RFALGRPGGETAPPVLEVRGEVYMRRADFEQLNERQREKGDKTFVNPRNAAAGAVRQLDS 258 Query: 230 TD-ITRYLNFFVHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE 287 R L+FF +GLG+ Y +LQ+++ GFPV VR A G+++++ + Sbjct: 259 GIAAQRPLSFFAYGLGEVEGGPEFATHYALLQRLKAWGFPVAAQVRIALGAPGLIAFHQQ 318 Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347 + + R LPYDIDG+VYKV+ +LQ+QLG R PRW ++HK+ ++ TR+ ID+Q+G Sbjct: 319 IGAERDQLPYDIDGVVYKVNSLALQRQLGFVTREPRWAVAHKYPAQEMMTRVEGIDVQVG 378 Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407 RTG LTPVARL PV +GG +TNATLHN ++ + +RVGD+V+V+RAG Sbjct: 379 RTGKLTPVARLAPVFVGGVTVTNATLHNLFELRR-----------KRVRVGDQVIVRRAG 427 Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467 +VIP+VV ++ R F P CPIC S VVR+ HRC+GGL C AQ Sbjct: 428 DVIPEVVGVVPAPRASYVPNFRMPRQCPICASTVVREPGE------VNHRCSGGLFCPAQ 481 Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527 + + + HF R A +IEGLG++ +D IR D+F L + + Sbjct: 482 RKQAVLHFAQRRAMDIEGLGEKLVDQLVD----GHVIRTLPDLFRL------DLPTLAGL 531 Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587 + S N+ D++ K + +L RF+F LGIRHVG A+ LA+++ + Sbjct: 532 DRMAEKSAQNVLDALQKSKQTTLPRFLFGLGIRHVGEATAKDLARHFGALDAIMDA---- 587 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSE 646 L++V VG ++A++I F+ P N V L + G + Sbjct: 588 ------GVDQLLQVNDVGPVVAESIHTFFAQPHNREVVGQLRECGVAWEEGEPTAGATLP 641 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + K +V TGTL + R +A++ + GA V+ +S+KT ++ G GSKLEKAQ LG+ Sbjct: 642 LAGKTIVLTGTLPTLSRDEAKDMLEAAGAKVAGSVSKKTHYVVAGAEAGSKLEKAQALGI 701 Query: 707 KIMNEEQFLFLLQQYN 722 +++E+ LL+ Sbjct: 702 PVLDEDGLRALLRGEG 717 >gi|212693183|ref|ZP_03301311.1| hypothetical protein BACDOR_02690 [Bacteroides dorei DSM 17855] gi|212664288|gb|EEB24860.1| hypothetical protein BACDOR_02690 [Bacteroides dorei DSM 17855] Length = 665 Score = 532 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 231/705 (32%), Positives = 356/705 (50%), Gaps = 48/705 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L +E+ H+ YY + P I D E+D L R + P+ D N P ++ Sbjct: 5 ERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G ++N + +V H P LSL ++ ++ +F R+ + + E K DGT Sbjct: 62 GSDINKNFMQVVHKYPMLSLTNTYSETEVTEFYDRVKKSL----NEDFEICCEMKYDGTS 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKND 197 I++ YE GK + A RGDG G+DV+ ++ I +IP VL PE E+RGE+ + Sbjct: 118 ISLTYENGKLLRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPEAFEIRGEILMPWVV 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F LN E A +ANPRNAASG L+ N + + G YE Sbjct: 178 FEELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPCDGHYEN 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L++ GF +++ R+ T + + R LP DG+V KV+ Q+ LG Sbjct: 238 LKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGF 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+SPRW I++KF +QA TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN D Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHNAD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+GL D+ +GD V V++ GE+IPK+V + N R F ++CP C Sbjct: 358 IIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKNARIMIGDKVKFITYCPEC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S++VR AA+ CT AC Q +++HF+SR A +I+GLG + +D F++ Sbjct: 407 GSKLVRYEGE------AAYYCTNDAACPPQIKGKIEHFISRRAMDIDGLGPETVDQFYQE 460 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 IR AD++TL T+ I N+ G+ S N+ I + + + ER +F+L Sbjct: 461 ----GLIRDVADLYTL------KTSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFAL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR VG +A+ +AK + S A LI V +G+ IAQ+I+ ++ Sbjct: 511 GIRFVGETVAKKVAKSFKSMDALADA----------SLDDLIHVDEIGEKIAQSILLYFA 560 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 NP+N +E L E ++ K +V +G R + +E + + G Sbjct: 561 NPKNRDIIERLRVAGVRLEADEEDTSGHTDKLAGKSVVISGVFAHHSRDEYKELIEKHGG 620 Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 +S KT ++ GDN G SKLEKAQ+LGV I++EE+FL +++ Sbjct: 621 KNVGSISSKTSFVLAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665 >gi|312888786|ref|ZP_07748349.1| DNA ligase, NAD-dependent [Mucilaginibacter paludis DSM 18603] gi|311298661|gb|EFQ75767.1| DNA ligase, NAD-dependent [Mucilaginibacter paludis DSM 18603] Length = 675 Score = 532 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 211/711 (29%), Positives = 373/711 (52%), Gaps = 46/711 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S +A+ ++ +L E+ H+ YY + P I D ++D A+ FP+ A +P Sbjct: 1 MSPTEAKNKIHTLSAELKQHNYNYYVLAMPTISDFDFDKKLEELAALEKQFPEFA---EP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GGE+ V H P +SL ++ ++L+ F R+ + + + E Sbjct: 58 DSPTQQVGGEITKEFETVRHKWPMMSLGNTYSEQELQDFDQRVRKAIG----DDFEYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGE 190 K DG +++ YE+GK + A RGDG G+DV+A ++ I TIP+ L N P+ E+RGE Sbjct: 114 LKFDGLSMSLTYEQGKLIRAVTRGDGIQGDDVTANVKTIHTIPKKLDEGNYPDHFEIRGE 173 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 V++ + F LN+E I PYANPRN ASG ++ + ++ R T + Sbjct: 174 VFMHRKAFDRLNNERIEQNEMPYANPRNFASGTIKLQDSREVARRPLDCFLYFLYTDKPV 233 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K ++ + ++ GF V + + + R L YDIDG+V KV+ ++ Sbjct: 234 FKTHWDSIMAVKSWGFHVCEHTKLCKNIDEVFEFIASWNEKRFDLSYDIDGIVLKVNSYA 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG A+SPRW I++K+ +QA T L + Q+GRTG +TPVA L+PV + G + Sbjct: 294 QQQELGFTAKSPRWAIAYKYKAQQAETVLESVSYQVGRTGSVTPVANLKPVVLAGTTVKR 353 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN + I L D+ GD V V++ GE+IPK++ + +R PDA P ++ Sbjct: 354 ASLHNANEILRL-----------DLHEGDSVFVEKGGEIIPKIISVNPLKRKPDAAPIAY 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 + CP C + +VR A H C C Q + +++HF+ R A NI+GLG + Sbjct: 403 ITHCPECGTELVRQEGE------ANHYCPNDEGCPPQIVGKMQHFIGRKAMNIDGLGDET 456 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ ++ +R +DI+ L R + +++ + FG+ S+ N+ + I K + + Sbjct: 457 IETLYQK----GFLRHISDIYDLHLR----SDELKQLGRFGEKSINNMMEGIEKSKQMPF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E+ +F +GIR+VG +AR L Y+ + N + + L V +G IA+ Sbjct: 509 EKVLFGMGIRYVGETVARKLVAYFKNIDNLMKA----------NIEELTTVDEIGTRIAE 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQE 668 ++V+++ +P ++ VE L + + ++ V S ++ K + +G +K R + ++ Sbjct: 559 SLVDYWSSPEHVQQVEKLKAQGLQFVSNEKELVLASDKLSGKTFIISGVFEKYSRDELKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + Q G + + +S K + ++ GDN G +KLEKA +L + I+++++ L +L Sbjct: 619 IIEQNGGKILSSISAKLNYLVAGDNMGPAKLEKANKLNIPIISDDELLTML 669 >gi|160914436|ref|ZP_02076651.1| hypothetical protein EUBDOL_00440 [Eubacterium dolichum DSM 3991] gi|158433594|gb|EDP11883.1| hypothetical protein EUBDOL_00440 [Eubacterium dolichum DSM 3991] Length = 664 Score = 532 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 228/708 (32%), Positives = 366/708 (51%), Gaps = 47/708 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + L + + YY KP + D EYD + + FP DPN + Sbjct: 3 QQRILELRKILDRLAYEYYVLDKPSVSDQEYDRYYQELLKLEDEFPQY---RDPNSITQR 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + + KV+H LSL+ +N+EDL F R+ + + + + +E K+DG Sbjct: 60 VGGVVLDAFEKVSHKRRMLSLDNAFNLEDLMAFDERVRQSVK-----NPEYVVELKMDGL 114 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y G+FV A RGDG GEDV+ +R I +IP +++ +EVRGEV + K Sbjct: 115 AISLHYHNGRFVQAVTRGDGLVGEDVTNNVRTIASIPMH--IDMEGDLEVRGEVIMPKKS 172 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 F ALN++ G + +ANPRNAA+G +R+L+ +R L+ +++ + E Sbjct: 173 FEALNEQRRKQGEEEFANPRNAAAGSIRQLDSRIAASRKLDAYLYYFEGAQQHAMHTHEE 232 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ + + VN + + + EM R+ LPY+IDG+V KV++ LG Sbjct: 233 ALEALEAMRIKVNPLRKVCKNMQEVWQFIQEMSERRNDLPYEIDGMVLKVNDLHAWDLLG 292 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A++PR+ I++KF ++ T+LLDI + +GRTG +TP A LEPV + G ++ ATLHNE Sbjct: 293 TTAKAPRYAIAYKFPAEEVVTKLLDIVLSVGRTGRITPNAVLEPVRVAGTTVSAATLHNE 352 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D IK +D+R+ D V++++AG++IP+VV + R+ + FP CP Sbjct: 353 DMIK-----------EKDVRINDDVIIRKAGDIIPEVVRSLPERRNGTQGIYKFPQICPF 401 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S++VR + AAH C C A+ + + HF SRDA NI+ LG ++++FF K Sbjct: 402 CGSKLVRFADE------AAHYCMN-QDCPARIVRGMIHFASRDAMNIDTLGDKKIEFFHK 454 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + DI+ L ++ +I + GF + S + +I + LE +F Sbjct: 455 Q----GFLNTIEDIYELSLHKE----EILALEGFQEKSFQKMILAIEASKERPLEDLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG + AR LAK Y + + L + +G + AQ+I ++ Sbjct: 507 LGIREVGKKAARVLAKTYGNIDDLMAAEEA----------ELTAIKDIGVVTAQSIRAYF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 P+N + L E S K +V TGTLQ ++R++A+ + +LGA Sbjct: 557 AEPKNKELIAHLKGFGLRMDTDKEVIKESIFTGKTVVLTGTLQYLKRNEAKALLERLGAN 616 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 VS +S+KTD++I G+ GSKL KA++LGV M+EE F+ + + Sbjct: 617 VSGSVSKKTDLVIYGEASGSKLSKAKELGVATMDEEAFMKEVNANEKS 664 >gi|146301217|ref|YP_001195808.1| DNA ligase, NAD-dependent [Flavobacterium johnsoniae UW101] gi|190359257|sp|A5FE87|DNLJ_FLAJO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146155635|gb|ABQ06489.1| DNA ligase, NAD-dependent [Flavobacterium johnsoniae UW101] Length = 668 Score = 532 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 217/707 (30%), Positives = 367/707 (51%), Gaps = 46/707 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++ + +L +E++ H+ YY I D ++D + + + P+ D + P Sbjct: 3 IQETIQTLREELNQHNYNYYVLDNATISDYDFDIKLKELQDLENKHPEFF---DEDSPTQ 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + + + H SL+ ++ EDL + RI R + ++ +T E K DG Sbjct: 60 RVGGTVTKNFKTIAHQYRMYSLDNSYSKEDLIDWENRIQRVLG---NVNLQYTCELKYDG 116 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I+I Y+ GK V A RGDG G++V+ I+ I +IP L + PE ++RGE+ + Sbjct: 117 ASISISYQNGKLVQALTRGDGFQGDEVTNNIKTIKSIPLKLKGDYPERFDIRGEIILPFA 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N E+I +G PY+NPRN ASG L+ + ++ + + + + K Q+E Sbjct: 177 GFEKMNQELIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLECLLYTVAGNNLPFKTQFE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ R GF V N + N+ + + + R LPY+ DG+V KV+ Q++LG Sbjct: 237 GLESARKWGFKVPNEAKLVNSMQEVFDFIDYWDVHRHKLPYETDGVVIKVNSIHSQEELG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW I++KF +QAST+L I Q+GRTG +TPVA LEPV + G ++ A+LHN Sbjct: 297 YTAKSPRWAIAYKFKSEQASTKLKSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNA 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L DIR+ D V V++ GE+IPK++ + + +R +++ + + CP Sbjct: 357 DQIEKL-----------DIRINDTVFVEKGGEIIPKIIAVDLEKRPENSEVTQYITHCPE 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C++ +VR+ A H C C Q + R++H++SR A +IEGLG + + FK Sbjct: 406 CETELVRNAGE------ANHYCPNFYGCPPQIIGRIQHYISRKAMDIEGLGGETVALLFK 459 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + + AD++ L+ I ++ S NL + + K + I E +F+ Sbjct: 460 N----GLVHNYADLYELKVED------ILHLERMAQKSAENLVNGVEKSKEIPFESVLFA 509 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG +A+ LAK+Y + +Q + LI V +G+ IA++++EF+ Sbjct: 510 LGIRFVGETVAKKLAKHYKNIDALSQA----------SLMDLILVDEIGERIARSVIEFF 559 Query: 617 QNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 +N N +E L K N + + K V +G + R + ++ + G Sbjct: 560 ENEENKIIIERLKKYGIQFETVERVNPNATEKFIGKTFVVSGVFSQFSRDELKKAIEDNG 619 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 V + +S KTD ++ GDN G +KLEKA +L + I++E++F+ L + Sbjct: 620 GKVGSSISAKTDFVVAGDNMGPAKLEKATKLNIPILSEDEFITKLNE 666 >gi|160872442|ref|ZP_02062574.1| DNA ligase, NAD-dependent [Rickettsiella grylli] gi|159121241|gb|EDP46579.1| DNA ligase, NAD-dependent [Rickettsiella grylli] Length = 674 Score = 532 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 249/697 (35%), Positives = 389/697 (55%), Gaps = 47/697 (6%) Query: 29 SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88 + H+ YY P+I D+ YD L R +AI +P+L P+ P ++G + Sbjct: 20 NTHNYHYYILDAPLINDATYDTLFRELEAIEKRYPELI---TPDSPTQRVGSTPLTTFKH 76 Query: 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148 V H++P LSLE ++ +++ F RI Q +I + EPK+DG +++ Y KG+ Sbjct: 77 VQHALPMLSLENAFSEKEVLAFNKRIQERLQ--TQEAIEYACEPKLDGIAVSLTYHKGQL 134 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-EIIEVRGEVYISKNDFLALNDEMIA 207 + AA RGDGH GED++ IR I +IP L +EVRGEVYI K F LN+ + Sbjct: 135 IRAATRGDGHRGEDITLNIRTILSIPLKLQGQHYPNDLEVRGEVYIPKKKFQQLNEMLKK 194 Query: 208 VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLG 265 G K + NPRNAA+G LR+LNP R L FF H +G A +L + + G Sbjct: 195 KGEKMFVNPRNAAAGSLRQLNPKITAERPLAFFTHSIGIIKNGKLASTHTAILNQFQQWG 254 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 P + A ++YY++++ R++LPY+IDG+VYKV+ +LQKQLG +R+PRW Sbjct: 255 LPRCPQTQLAKNITAALAYYHKIQKERASLPYEIDGVVYKVNALALQKQLGFISRAPRWA 314 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 +++KF ++AST++L I+ Q+GRTG LTPVARL+PV +GGA ++NATLHN D +K Sbjct: 315 LAYKFPAEEASTKILSIEFQVGRTGALTPVARLQPVFVGGATLSNATLHNMDEVKR---- 370 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 +DIR GD V+++RAG+VIP+VV +I +R + +P + P CPIC S +++ Sbjct: 371 -------KDIREGDTVIIRRAGDVIPEVVQVIKKKRPANTRPLTLPKQCPICCSAIIKVE 423 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 A RC+G L C Q+ E +KHF SR A NIEGLG + + I+ Sbjct: 424 TE------AIARCSGALFCPLQRKEAIKHFASRQAMNIEGLGTKIAYQLVDT----GLIQ 473 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 ++++ L +Q + + FG+ S L+ +I + +L RF++SLGIR VG Sbjct: 474 DVSNLYHLTIKQLAA------LDHFGEKSAQKLHRAIQASKKTTLTRFLYSLGIRDVGIS 527 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 A +LA+++ + + + + L +P +G ++A I +F+ N+ + Sbjct: 528 TALNLAQHFQALKPIMDADSAL----------LQTIPDIGPVVATHIKKFFSEQHNLDVI 577 Query: 626 EALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 + LL + +S K +V TG+L + R +A + + +LG VS+ +S+ Sbjct: 578 KNLLAAGITWPKPEFIPPSQTSPFTGKNVVLTGSLSTLSREQATQLLQKLGTKVSSSVSK 637 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 TD +I GDNPGSKL +A L + ++ E++FL LL++ Sbjct: 638 NTDYVIAGDNPGSKLTRAHALKLTVLTEKKFLELLKE 674 >gi|119386790|ref|YP_917845.1| DNA ligase, NAD-dependent [Paracoccus denitrificans PD1222] gi|166216224|sp|A1B9F5|DNLJ_PARDP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|119377385|gb|ABL72149.1| DNA ligase, NAD-dependent [Paracoccus denitrificans PD1222] Length = 765 Score = 532 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 298/758 (39%), Positives = 441/758 (58%), Gaps = 63/758 (8%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 L P+ L ++ A E + L +E++ + YYQ P I D+EYDA KRR + I FPDL Sbjct: 22 LPPVSGLDVKAAEAEHARLSEEVAQANLAYYQEDAPFISDAEYDASKRRLEEIEARFPDL 81 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 A S P ++G + KV H +P LSLE ++ D+ F+ R+ F Sbjct: 82 AHSG---SPTAQVGAAPDTRFAKVPHRLPMLSLENGFSQGDVEAFVQRVRSFLNLASGAP 138 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184 + T EPKIDG +++RYE G+ V AA RGDG GE+V+A R I IP LS + PE+ Sbjct: 139 LEVTAEPKIDGLSLSLRYEGGRLVQAATRGDGAVGENVTANARTIADIPGQLSGDGYPEV 198 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +E+RGE Y+S DF LN + + +ANPRNAA+G LR+L+P+ R L FF + Sbjct: 199 LEIRGECYMSHEDFEKLN---QSETGRVFANPRNAAAGSLRQLDPSVTAARPLRFFAYAW 255 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G+ S FA Q E +++M+ GF N R + ++S + E++ +R+TL YDIDG+V Sbjct: 256 GEVSASFAGTQMEAVRRMQAFGFQTNPLTRICASVSEMLSAWAEIEQMRATLGYDIDGVV 315 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YKV++ + Q +LG R+ +PRW ++HKF ++A TRL IDIQ+GRTG L+PVARL PV + Sbjct: 316 YKVNDLAYQARLGMRSTTPRWALAHKFPAERAWTRLEAIDIQVGRTGALSPVARLHPVTV 375 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +++NATLHNEDYI G A G +RGG+DIR+GD V V RAG+VIPKV D+ + +R Sbjct: 376 GGVVVSNATLHNEDYIAGRGADGSEIRGGKDIRIGDWVEVYRAGDVIPKVADVDLAKRPS 435 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 +A+P++FP+ CP C S +R+ + RCTGGL C AQ +E+L+HFVSR AF+I Sbjct: 436 EAEPYAFPTTCPECGSPAIREEG------DSVRRCTGGLICPAQAVEKLRHFVSRAAFDI 489 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGDVSVTNLYDSI 542 EGLG + ++ F+ I PADIFTLQ R T+++N G+G+ S +L+ +I Sbjct: 490 EGLGAKLVEELFRD----GWIAEPADIFTLQDRYGPGQLTQLKNREGWGEKSAASLFQAI 545 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN----------------- 585 KRR I L R +F+LGIRHVG A+ LA++Y S++ ++ Sbjct: 546 EKRREIPLARLLFALGIRHVGEVAAQDLARHYGSWEALEIALDTARPAALAHRVAEDAAL 605 Query: 586 --------------------------NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 ++ W LI +G ++A ++ + + N Sbjct: 606 AEREAARAEGRRARPSEARAAALAQVDLSPEATAAWTGLIAADGIGPVLAMSLSDAFANE 665 Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 R A++ L+ ++ + + S I K LVFTGTL+K+ R +A+ LGA V+ Sbjct: 666 RERAAIDRLVSFLTV-LPPEARATDSAIAGKTLVFTGTLEKMTRAEAKARAEALGAHVAG 724 Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +S KTD++I G GSK +KA +LG+K+++E+++L + Sbjct: 725 SVSAKTDLLIAGPGAGSKAKKAAELGIKVIDEDEWLAI 762 >gi|237709923|ref|ZP_04540404.1| DNA ligase [Bacteroides sp. 9_1_42FAA] gi|229456016|gb|EEO61737.1| DNA ligase [Bacteroides sp. 9_1_42FAA] Length = 665 Score = 532 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 231/705 (32%), Positives = 356/705 (50%), Gaps = 48/705 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L +E+ H+ YY + P I D E+D L R + P+ D N P ++ Sbjct: 5 ERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G ++N + +V H P LSL ++ ++ +F R+ + + E K DGT Sbjct: 62 GSDINKNFMQVVHKYPMLSLTNTYSETEVTEFYDRVKKSL----NEDFEICCEMKYDGTS 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKND 197 I++ YE GK + A RGDG G+DV+ ++ I +IP VL PE E+RGE+ + Sbjct: 118 ISLTYENGKLLRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPEAFEIRGEILMPWVV 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F LN E A +ANPRNAASG L+ N + + G YE Sbjct: 178 FEELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPCDGHYEN 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L++ GF +++ R+ T + + R LP DG+V KV+ Q+ LG Sbjct: 238 LKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGF 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+SPRW I++KF +QA TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN D Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHNAD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+GL D+ +GD V V++ GE+IPK+V + N R F ++CP C Sbjct: 358 IIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKNARIMIGDKVKFITYCPEC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S++VR AA+ CT AC Q +++HF+SR A +I+GLG + +D F++ Sbjct: 407 GSKLVRYEGE------AAYYCTNDAACPPQIKGKIEHFISRRAMDIDGLGPETVDQFYQE 460 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 IR AD++TL T+ I N+ G+ S N+ I + + + ER +F+L Sbjct: 461 ----GLIRDVADLYTL------KTSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFAL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR VG +A+ +AK + S A LI V +G+ IAQ+I+ ++ Sbjct: 511 GIRFVGETVAKKVAKSFKSMDALADA----------SLDDLIHVDEIGEKIAQSILLYFA 560 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 NP+N +E L E ++ K +V +G R + +E + + G Sbjct: 561 NPKNRDIIERLRVAGVRLEADEEDTSGHTDKLAGKSIVISGVFAHHSRDEYKELIEKHGG 620 Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 +S KT ++ GDN G SKLEKAQ+LGV I++EE+FL +++ Sbjct: 621 KNVGSISSKTSFVLAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665 >gi|294776463|ref|ZP_06741938.1| DNA ligase (NAD(+)) [Bacteroides vulgatus PC510] gi|294449660|gb|EFG18185.1| DNA ligase (NAD(+)) [Bacteroides vulgatus PC510] Length = 665 Score = 532 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 232/705 (32%), Positives = 356/705 (50%), Gaps = 48/705 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L +E+ H+ YY + P I D E+D L R + P+ D N P ++ Sbjct: 5 ERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G ++N + +V H P LSL ++ ++ +F R+ + + E K DGT Sbjct: 62 GSDINKNFTQVVHKYPMLSLANTYSETEVTEFYDRVKKSL----NEDFEICCEMKYDGTS 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKND 197 I++ YE GK V A RGDG G+DV+ ++ I +IP VL PE E+RGE+ + Sbjct: 118 ISLTYENGKLVRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPEAFEIRGEILMPWVV 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F LN E A +ANPRNAASG L+ N + + G YE Sbjct: 178 FEELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPCDGHYEN 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L++ GF +++ R+ T + + R LP DG+V KV+ Q+ LG Sbjct: 238 LKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGF 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+SPRW I++KF +QA TRL + Q+GRTG +TPVA L+P+ + G ++ A+LHN D Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPIQLSGTVVKRASLHNAD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+GL D+ +GD V V++ GE+IPK+V + + R F + CP C Sbjct: 358 IIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKDARIMIGDKVKFITHCPEC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S++VR AA+ CT AC Q +++HF+SR A NI+GLG + +D F++ Sbjct: 407 GSKLVRYEGE------AAYYCTNDAACPPQIKGKIEHFISRRAMNIDGLGPETVDQFYQE 460 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 IR AD++TL T+ I N+ G+ S N+ I + + + ER +F+L Sbjct: 461 ----GLIRDVADLYTL------KTSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFAL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR VG +A+ +AK + S A +LI V +G+ IAQ+I+ ++ Sbjct: 511 GIRFVGETVAKKVAKSFKSMDALADA----------SLDNLIHVDEIGEKIAQSILLYFA 560 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 NP+N +E L E ++ K +V +G R + +E + + G Sbjct: 561 NPKNRDIIERLRVAGVRLEADEEDTSEHTDKLAGKSIVISGVFAHHSRDEYKELIEKHGG 620 Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 +S KT I+ GDN G SKLEKAQ+LGV I++EE+FL +++ Sbjct: 621 KNVGSISSKTSFILAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665 >gi|88703478|ref|ZP_01101194.1| DNA ligase [Congregibacter litoralis KT71] gi|88702192|gb|EAQ99295.1| DNA ligase [Congregibacter litoralis KT71] Length = 674 Score = 532 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 229/712 (32%), Positives = 374/712 (52%), Gaps = 46/712 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + R + SL +++ + YY P + D EYD R + A P+L D Sbjct: 1 MPGDDIRNRVHSLREQLERWNHEYYILDSPTVPDQEYDGALRELQTLEEAHPEL---RDA 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G + V H +P LSL+ ++ E+L F+ R+ + E Sbjct: 58 SSPTQRVGAAPLSAFSSVEHPMPMLSLDNAFSDEELAAFLKRVVDRLDVDSVPEL--VAE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190 PK+DG +++ Y +G AA RGDG GED++ +R I ++P L + P ++E+RGE Sbjct: 116 PKLDGIAVSLIYREGLLERAATRGDGTYGEDITLNVRTIRSVPLKLRGASCPALVEIRGE 175 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSE 248 +++ + F A N+ G KP+ NPRNAA+G LR+L+ R L F + G E Sbjct: 176 IFMPRAGFEAFNEHARRHGEKPFVNPRNAAAGSLRQLDSKITARRPLEFCAYASGQHPEE 235 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + +++LQ G P++ + + + Y++ + R L +DIDG+VYKV++ Sbjct: 236 GWPGSHWDVLQLFASWGVPISRYAERLSGLDDCIDYFHRLGDERDALSFDIDGIVYKVND 295 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+ Q++LG AR+PRW I+ KF ++A T++ ++ Q+GRTG +TPVARLEPV +GG + Sbjct: 296 FAAQRELGFVARAPRWSIARKFPAQEAVTKVTGVEFQVGRTGAITPVARLEPVFVGGVTV 355 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I L ++ GD V+V+RAG+VIP+VV +I R + P Sbjct: 356 SNATLHNMDEIARL-----------NLHHGDSVVVRRAGDVIPQVVSVIAERREESSAPI 404 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP+CQS V R A RCTGGL C+AQ ++HF SR A +I+GLG+ Sbjct: 405 DAPPSCPVCQSPVERVAGE------ATLRCTGGLVCAAQLKAAVRHFASRRAMDIDGLGE 458 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ +R AD+F L++ + ++ G+ S L +I+ R Sbjct: 459 KIVEQLVDR----GLVRDVADLFKLEQ------GALLSLERMGEKSAAKLLAAIDASRQT 508 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFIF+LG+R VG A +LA ++ + + + D L+ VP VG ++ Sbjct: 509 TLPRFIFALGVREVGEATALALANHFGTLEAL----------SGADLDDLLEVPDVGPVV 558 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 A+ + F++ N+ + LL+ V ++ + V +G L+ R +A+ Sbjct: 559 AEHVHGFFRADANLGVLRRLLEAGIAWPAVAVAPEVGGALDGQVWVVSGKLESQSRDEAE 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA + +S KT +++ G GSKL KA+ LGV++++E +FL L+ Sbjct: 619 AALRALGARTAKSVSGKTTVLLAGPGAGSKLSKAESLGVEVISEAEFLTRLE 670 >gi|294791934|ref|ZP_06757082.1| DNA ligase, NAD-dependent [Veillonella sp. 6_1_27] gi|294457164|gb|EFG25526.1| DNA ligase, NAD-dependent [Veillonella sp. 6_1_27] Length = 667 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 231/704 (32%), Positives = 367/704 (52%), Gaps = 46/704 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L+QE+++ YY P + D EYD R + A P+ P+ P + Sbjct: 4 KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIV---PSSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++ S KV H P LSL +++ +++R F +R+ + + +E KIDG Sbjct: 61 VGMKVEGSFEKVVHGRPMLSLSNVFSADEVRAFASRVEKELG---HKPSAYVVELKIDGL 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G FV A RGDG GEDV+A +R I +IP L + PE IEVRGE Y+ ++ Sbjct: 118 AVNLHYENGMFVRAVTRGDGRVGEDVTANVRTIKSIPLYL-EDAPEFIEVRGEAYMPHSE 176 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N+E G + NPRNAA+G LR+ +P +R L FF + +G Q E Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSEVGANIHSQEE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +LQ + F VN R T ++ N R LPYD DG+V KV+ F Q+ LG Sbjct: 237 LLQSLETFKFSVNPHYRVCKTIDEVIDAINYWGEKRHELPYDTDGMVIKVNSFEDQEVLG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ P+W ++K+ ++ T L DI I +GRTG+LTP LE V + G ++ TLHN+ Sbjct: 297 STAKDPKWATAYKYPPEEVETILKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQ 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+I +DIR+GD V++ +A E+IP+V+ ++ +R PF+ P+ CP+ Sbjct: 357 DFI-----------NEKDIRIGDHVIIHKAAEIIPEVIRVVPEKRTGSEVPFTIPNTCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C+S VR AA RCT C A + E++ HF SRDA NI+GLG ++ Sbjct: 406 CESPTVRREGE------AAVRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 ++ I D++ L Q + G S NL +I + L+R ++ Sbjct: 459 NK----LITNVVDLYHLTVDQLVTM------DRMGKKSAENLVKAIADSKTRGLDRVLYG 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR +G++ A ++A S + F L+ V +G +A +IVE+ Sbjct: 509 LGIRLIGSKAAGTIANVVKSMERFLTITK----------EELVAVEEIGPTMADSIVEYR 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 Q+P ++ +E L + +++E + +V TG L+ + R +A + + GA Sbjct: 559 QDPAHVEIIEGLTAAGLKMTVDVVEAAGNQMEGEIVVLTGKLEVMGRSEAGKILEAHGAK 618 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 V+ +S+KT ++I G++ GSKL KA +LG+++MNEE+F+ LL++ Sbjct: 619 VTGSVSKKTTLVIAGEDSGSKLTKANELGIRVMNEEEFVELLRE 662 >gi|218248171|ref|YP_002373542.1| NAD-dependent DNA ligase [Cyanothece sp. PCC 8801] gi|254781307|sp|B7K0A2|DNLJ_CYAP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218168649|gb|ACK67386.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 8801] Length = 674 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 225/696 (32%), Positives = 365/696 (52%), Gaps = 51/696 (7%) Query: 30 YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89 + YY PI+ DS YD L R + +P L P+ P ++G + + Sbjct: 21 KANYAYYVLDNPIMEDSVYDQLYRELQDLESQYPILI---TPDSPTQRVGDQPAAQFNSI 77 Query: 90 THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149 H+IP SLE +N+++L+K+ R R+ Q + + + E KIDG+ + + YE G + Sbjct: 78 RHNIPLYSLENAFNLQELQKWEERWQRYDQVSNSD---YVCELKIDGSALALTYEDGILI 134 Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDFLALNDEMIAV 208 RGDG +GE+++ +R I +IP L+ N P +E+RGE ++ N+F LN E Sbjct: 135 RGVTRGDGITGEEITQNVRTIRSIPLKLTLENPPSRVEIRGEAFLPLNEFDRLNGERKQA 194 Query: 209 GRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFP 267 G +ANPRNAA+G LR+L+ + R L FF + L + Q+E L+ ++ +GF Sbjct: 195 GEPLFANPRNAAAGTLRQLDSKVVSERRLQFFAYTLHLPEDNSLSSQWESLEWLKKMGFL 254 Query: 268 VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327 VN + T + Y+ ++ R LPY DG+V K+++++LQ QLG + PRW I+ Sbjct: 255 VNPNCQLCPTLEAVADYFRHWETARHDLPYMTDGVVVKINDYALQNQLGFTQKFPRWAIA 314 Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387 K+ ++A TR+ +I + +GRTG +TP+A +EPV++GG ++ ATLHN D + L Sbjct: 315 LKYPAEEAPTRVKEIIVNVGRTGAVTPMAIMEPVHLGGTIVQRATLHNSDRVSEL----- 369 Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447 DIRVGD V++++AGE+IP+V+ ++ R P+++P+ PS CP C S +VR + Sbjct: 370 ------DIRVGDTVIIRKAGEIIPEVLRVLPELRLPNSRPYQMPSHCPECGSTLVRPVGE 423 Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507 A RC +C A + H+ SRDA +I GLG++ + ++E I Sbjct: 424 ------AVTRCVNS-SCPAILRGSVVHWASRDALDIRGLGEKIVSLLVENE----LITSI 472 Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567 AD++ L K+ + G S L ++I + S R ++ LGIR+VG A Sbjct: 473 ADLYQLTPE------KVAALDRMGTKSAQKLINAIEGSKRQSWPRVLYGLGIRYVGNVTA 526 Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 + L + S + +Q +L V VG+ IAQ++ ++++ N +E Sbjct: 527 KLLTDNFPSVEVLSQA----------SVPTLASVYGVGEEIAQSVFDWFKIVENQTLIEQ 576 Query: 628 LLKEVSPSIGRHEKNVS-----SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 L + VS I K V TGTL ++R++A+ + + G V+ +S Sbjct: 577 LKIAGLQLENIASQAVSLTPSSGNIAGKTFVLTGTLPTLKRNEAKALIEKAGGKVTGSIS 636 Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 KTD ++VG+ GSKL KAQ+LG+ ++E L L Sbjct: 637 SKTDYLVVGEEAGSKLAKAQELGITQLSEADLLKFL 672 >gi|157691416|ref|YP_001485878.1| NAD-dependent DNA ligase LigA [Bacillus pumilus SAFR-032] gi|190359234|sp|A8FAQ1|DNLJ_BACP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157680174|gb|ABV61318.1| DNA ligase (NAD(+)) [Bacillus pumilus SAFR-032] Length = 668 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 236/718 (32%), Positives = 391/718 (54%), Gaps = 56/718 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E A++ + L + ++ ++ Y+ +P + D+EYDA R ++ PDL + Sbjct: 1 MDKEAAKRRIEELHEILNQYNYEYHTLDRPSVPDAEYDARMRELISLEEEHPDLKAA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + + KV H P LSL +N +DL F R+ + + I + +E Sbjct: 58 DSPSQRVGGAVLDAFQKVRHGTPMLSLGNAFNEQDLLDFDRRVRQAVG----DDIAYNVE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG +GED++ ++ I +IP L + P IEVRGE Sbjct: 114 LKIDGLAVSLRYENGVFVRGATRGDGTTGEDITENLKTIRSIP--LKIKRPLSIEVRGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 ++ K F ALN++ + +P+ANPRNAA+G LR+L+ R L+ FV+ + + EI Sbjct: 172 FMPKPSFEALNEKRLQNEEEPFANPRNAAAGSLRQLDTKIAAKRNLDIFVYSIAELDEIG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + Q E L + LGF N R T ++ +K+ R+ Y+IDG+V KVD + Sbjct: 232 VESQSEGLDLLDELGFKTNKERRTCQTIEEVIELIETLKTKRADFSYEIDGIVIKVDSLA 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG A+SPRW +++KF ++ T+LLDI++ +GRTG++TP A LEPV + G + Sbjct: 292 QQEELGFTAKSPRWAVAYKFPAEEVVTKLLDIELSVGRTGVITPTAILEPVKVAGTTVQR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED IK +DIR+ D+V+VK+AG++IP+V +++++R + +PF Sbjct: 352 ASLHNEDLIK-----------EKDIRLLDQVIVKKAGDIIPEVAGVLIDQRTGEEKPFHM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 PTECPECHSELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + FK + + +D++ L + + + G+ SV NL SI + + SL Sbjct: 454 ITQLFKEQ----LVSRVSDLYRLTKEELI------QLERMGEKSVENLLRSIEQSKENSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIR +G++ A++LA ++ Q L+ V +G+ +A Sbjct: 504 ERLLFGLGIRFIGSKAAKTLALHFGDIDQLKQATK----------EQLLEVDEIGEKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPS-----IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A+V +++ + + L + + S K +V TG L+++ R+ Sbjct: 554 AVVTYFEKEEILNLLNELKELGVNMTYTGPKPVKVEESDSYFAGKTIVLTGKLEEMARND 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 A+ + LG ++ +S+KTD++I G+ GSKL KA++L ++I +E + +L++ Sbjct: 614 AKAAIEALGGKLAGSVSKKTDLVIAGEAAGSKLTKAEELNIEIWDE---VKMLEELKK 668 >gi|238019226|ref|ZP_04599652.1| hypothetical protein VEIDISOL_01090 [Veillonella dispar ATCC 17748] gi|237863925|gb|EEP65215.1| hypothetical protein VEIDISOL_01090 [Veillonella dispar ATCC 17748] Length = 667 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 230/704 (32%), Positives = 365/704 (51%), Gaps = 46/704 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L+QE+++ YY P + D EYD R + A P+ P+ P + Sbjct: 4 KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIV---PSSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++ S KV H P LSL +++ +++R F R+ + + +E KIDG Sbjct: 61 VGMKVEGSFEKVVHGRPMLSLSNVFSADEVRAFANRVEKELG---HKPSAYVVELKIDGL 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G FV A RGDG GEDV+A +R I +IP L N PE IEVRGE Y+ ++ Sbjct: 118 AVNLHYENGMFVRAVTRGDGRVGEDVTANVRTIKSIPLYL-ENAPEFIEVRGEAYMPHSE 176 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N+E G + NPRNAA+G LR+ +P +R L FF + +G Q E Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSEEGASIHSQEE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L+ + F VN R T ++ N R LPYD DG+V KV+ F Q+ LG Sbjct: 237 LLKSLESFKFSVNPHYRVCQTIDEVIETINYWDEKRHDLPYDTDGMVIKVNSFDDQEALG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ P+W ++K+ ++ T L DI I +GRTG+LTP LE V + G ++ TLHN+ Sbjct: 297 STAKDPKWATAYKYPPEEVETILKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQ 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+I +DIR+GD V++ +A E+IP+V+ ++ +R PF+ P+ CP+ Sbjct: 357 DFI-----------NEKDIRIGDHVIIHKAAEIIPEVIRVVPEKRTGSEVPFTIPNTCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C+S VR AA RCT C A + E++ HF SRDA NI+GLG ++ Sbjct: 406 CESPAVRREGE------AAVRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 ++ I D++ L Q + G S NL +I + L+R ++ Sbjct: 459 NK----LITNVVDLYHLTVDQLVTM------DRMGKKSAENLVKAIADSKTRGLDRVLYG 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR +G++ A ++A S + F L+ V +G +A +IVE+ Sbjct: 509 LGIRLIGSKAAATIANVVKSMERFMTITK----------EELVAVEEIGPTMADSIVEYR 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 Q+ ++ +E L+ + +++E + +V TG L+ + R +A + + GA Sbjct: 559 QDSAHVEIIEGLIAAGLKMTVDVVEAAGNQMEGEIVVLTGKLEVMGRSEAGKILEAHGAK 618 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 V+ +S+KT ++I G++ GSKL KA +LG+++MNEE+F+ LL+ Sbjct: 619 VTGSVSKKTTLVIAGEDSGSKLTKANELGIRVMNEEEFVELLKD 662 >gi|294673321|ref|YP_003573937.1| DNA ligase (NAD(+)) [Prevotella ruminicola 23] gi|294473291|gb|ADE82680.1| DNA ligase (NAD(+)) [Prevotella ruminicola 23] Length = 674 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 210/718 (29%), Positives = 349/718 (48%), Gaps = 58/718 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ + + L +E+ H+ YY ++P I D E+D + + P++A DPN Sbjct: 1 MDEIK-RIEQLRKELHEHNYKYYVLNQPTIGDQEFDFMMHELQDLEAKHPEMA---DPNS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G ++N +V H P LSL +N +D+ + + + E K Sbjct: 57 PTQRVGSDLNEEFRQVEHKYPMLSLANTYNEQDVADWYESVKKGL---AGEDFEVCCEMK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--------- 184 DG I++ Y GK A RGDG G+DV+ ++ I +IP VL+ Sbjct: 114 YDGLSISLTYVDGKLTQAVTRGDGVHGDDVTTNVKTIRSIPLVLTPPAAGDLFAAPAYPR 173 Query: 185 -IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243 E+RGE+ + + F LN E +ANPRNAASG L+ + + Sbjct: 174 EFEIRGEILMPWSVFERLNKEREEAEEPLFANPRNAASGTLKSQKSSLVASRQLDAYLYY 233 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 E+ A+G YE L+ R GF ++ G+++ T I + N + R LP DG+V Sbjct: 234 LLGEELPAEGHYENLEVARSWGFKISEGMKKVKTLQQIYDFINYWDTERKKLPVATDGIV 293 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV+ Q+ LG A+SPRW I++KF ++ TRL ++ Q+GRTG +TPVA ++PV + Sbjct: 294 LKVNSIRQQRALGFTAKSPRWAIAYKFKAERVCTRLNEVTYQVGRTGAITPVANMDPVQL 353 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G + ATL+NED+IK D+ +GD V V++ GE+IPK+V + +++R Sbjct: 354 AGTTVKRATLNNEDFIKSF-----------DLHIGDYVYVEKGGEIIPKIVGVDIDQRPI 402 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 AQP F CP C + +VR AA C C Q R++HF++R A NI Sbjct: 403 IAQPVEFIKRCPECGTPLVRYEGE------AAWYCPNDSGCPPQIKGRIEHFIARKAMNI 456 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 + LG + +D +++ I AD++ + +Q G S + + I Sbjct: 457 DSLGPETVDDYYRH----GLIHNIADLYDIDVQQING-------DGSRTKSAQRIVNGIA 505 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + + ER +F+LGIR VG A+ LA+++ + L + Sbjct: 506 ASKEVPFERVVFALGIRFVGETSAKLLARHFKNIDALMNA----------GIEELQEIEG 555 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKI 661 +G+++A++I+ ++ N+ +E L N+S ++ + +V +G Sbjct: 556 IGEVMAKSIITYFHTEENLKIIERLRNYGLQMELSEAQTANISDKLAGQSIVISGVFAHH 615 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 R + + + Q G +S KT I+ G+N G SKL+KA++LG+KIM+EE+FL ++ Sbjct: 616 SRDEYKAIIEQNGGKNVGSISSKTSFILAGENMGPSKLQKAEKLGIKIMSEEEFLEMI 673 >gi|189347498|ref|YP_001944027.1| DNA ligase, NAD-dependent [Chlorobium limicola DSM 245] gi|254781283|sp|B3EFT6|DNLJ_CHLL2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|189341645|gb|ACD91048.1| DNA ligase, NAD-dependent [Chlorobium limicola DSM 245] Length = 673 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 222/715 (31%), Positives = 364/715 (50%), Gaps = 50/715 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + A E++ L +EI H+ YY ++P+I D E+D L + A+ PDL P Sbjct: 1 MDRAMAADEIARLRKEIERHNYLYYVEAEPVISDYEFDRLLEQLIALERLHPDLV---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ S V H P LSL +++E++ F R+ R + E Sbjct: 58 DSPSLRVGGQITRSFPSVRHREPMLSLSNTYSMEEVADFYRRVRRLLLDEGIGEQEMVAE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI------- 184 K DG +++ Y G V A RGDG G+D++ +R I +IP L + E Sbjct: 118 LKFDGVAVSLIYRNGLLVQGATRGDGVQGDDITVNLRTISSIPLRLETSASETLSGSDRE 177 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244 IEVRGEV++ K DF LN+ +ANPRNA +G L+ + ++ R FV Sbjct: 178 IEVRGEVFMPKEDFDRLNEGRPE--EDRFANPRNATAGTLKLQDSAEVARRRMTFVAYFL 235 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 K ++ L+ + LGF + R H I + E R LPY+ DG+V Sbjct: 236 KGIGDQHMPHFDRLKLLGKLGFFTGDHYRLCPELHDIERFIGEWSEKRWKLPYETDGVVL 295 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 K++ L ++LG ++SPRW I++K+ +QA T LL + Q+GR G +TPVA L PV + Sbjct: 296 KLNAVWLWERLGATSKSPRWAIAYKYPAQQAITELLGVVFQVGRLGTITPVAELRPVKLA 355 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G+ ++ +TLHN D I+ L +RV DRV+V+++GEVIPK++ + + Sbjct: 356 GSTVSRSTLHNFDEIERL-----------GVRVHDRVVVEKSGEVIPKIIRVAEDSGSLF 404 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + P P CP C + + R N + C C AQ R+ H+ SR+A +I+ Sbjct: 405 SVPIVVPERCPSCDTPLTRPENE------VSWYCPNEEGCPAQIRGRMLHYASRNAMDIQ 458 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 LG +D ++ P D+++LQ Q +E + G S NL +I + Sbjct: 459 SLGIALVDQLVGR----GLVKDPGDLYSLQLPQ------LEPLERMGTKSSINLVRAIEE 508 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 R S +R +++LGIRHVG AR LA Y + + + L VP + Sbjct: 509 SRTKSYDRLLYALGIRHVGQATARELAGAYPYFASLHEAGE----------QELAEVPDI 558 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPS-IGRHEKNVSSEIENKKLVFTGTLQKIQR 663 G ++A++I++F+ P ++ L + P G+ ++ V++ E + ++FTG L++ R Sbjct: 559 GPVVARSIIDFFSKPWVQAMLDKLEQAGLPMRAGKEKEQVNNNFEGQSVIFTGGLERHVR 618 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+E V + G + + +S+KT +++ G GSKLE+A +LGV+++ E++F +L Sbjct: 619 QEAEEMVRERGGRIVSSVSKKTSLVVAGKEAGSKLERALKLGVRVIGEDEFEAML 673 >gi|194466912|ref|ZP_03072899.1| DNA ligase, NAD-dependent [Lactobacillus reuteri 100-23] gi|194453948|gb|EDX42845.1| DNA ligase, NAD-dependent [Lactobacillus reuteri 100-23] Length = 680 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 239/725 (32%), Positives = 384/725 (52%), Gaps = 50/725 (6%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M ++Q P++ L++++A+ E+ L +++ YY+ P + D YD +R + Sbjct: 1 MSEKQ-TPVKELTLQEAQDEIKPLRAKLTKWGKEYYEQDNPTVEDHVYDRAYQRLVQLEE 59 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP L + P ++GG L KV H IP LS+ +++IE+L F R + Sbjct: 60 QFPQLV---SADSPTQRVGGATESQLTKVRHEIPMLSMGDVFSIEELMDFNQRQQE--NR 114 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 + + LE KIDG +++ YE GK V + RG+G GEDV+A +R I ++P L Sbjct: 115 DVEVEPEYNLELKIDGLSLSLVYENGKLVQGSTRGNGAIGEDVTANVRTIKSVPAELPEP 174 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 + IEVRGE Y+ K F LN + A G +ANPRNAA+G LR+L+P R L+ F Sbjct: 175 LS--IEVRGECYMPKAAFAKLNAKREAEGLPVFANPRNAAAGSLRQLDPKVTAQRELDTF 232 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 ++ + + ++ K Q E L +MR LGF VN + +T I Y E + R L Y I Sbjct: 233 MYYVPEYQKLGVKTQAEALDRMRELGFNVNPNNQVVHTREEIEKYIEEYTAQRDKLTYGI 292 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KV++ + LG + PRW I++KF ++ +T + DI +GRTG +TP A ++ Sbjct: 293 DGIVEKVNDLDTEVALGNTVKVPRWEIAYKFPPEEQATIVRDIVWTVGRTGNVTPTAVMD 352 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G ++ A+LHN DY+ +DIR+GD V + +AG++IP++ + + Sbjct: 353 PVQLAGTTVSRASLHNPDYLH-----------EKDIRIGDTVYLHKAGDIIPEISKVDLT 401 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R D+ + P+ CP+C S +V A RC + C AQ E L HF SR+ Sbjct: 402 KRPADSVEYEIPTKCPVCGSELVHLDGE------VALRCINPM-CPAQIKEGLAHFASRN 454 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A NI+GLG + ++ + E I A ++ L Q + + FG+ S NL Sbjct: 455 AMNIDGLGPRIIEQLWDKE----LIHDVAGLYRLNHDQLLT------LDKFGEKSTANLL 504 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 SI+ RN S+ER +F LGIRHVGA+ AR + +++ + + D + Sbjct: 505 TSIDNSRNNSVERLLFGLGIRHVGAKAARIIMEHFGDLDSLMKA----------DADEIS 554 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTG 656 + +G I ++IV ++ N + + ++ L + R N SE +++V TG Sbjct: 555 AISGIGPTIGESIVTYFANQQVVKLIDELREVGVNFAYLGSRSNANPDSEWNGRRVVLTG 614 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 L ++ R +A+ ++ GA V+ +S+KTDI+I G + GSKL KAQ LG+ + NE+QF Sbjct: 615 KLTEMTRGEAKSWLENHGAKVTGSVSKKTDIVIAGADAGSKLTKAQDLGIDVWNEQQFSQ 674 Query: 717 LLQQY 721 +++ Sbjct: 675 AMKEE 679 >gi|74316642|ref|YP_314382.1| NAD-dependent DNA ligase [Thiobacillus denitrificans ATCC 25259] gi|123745545|sp|Q3SL40|DNLJ_THIDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|74056137|gb|AAZ96577.1| NAD-dependent DNA ligase [Thiobacillus denitrificans ATCC 25259] Length = 686 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 243/709 (34%), Positives = 370/709 (52%), Gaps = 52/709 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + ++L +EI H+ YY P I D+EYD L +A+ A P+L + Sbjct: 1 MADRDVQARAAALRREIERHNYAYYVLDAPTIPDAEYDRLYHELEALEAAHPELVAA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI--EDLRKFITRIYRFWQK-KDDNSIFF 128 + P ++GG+ V H++P LS+ + R F R+ + D + + Sbjct: 58 DSPTRRVGGQPLAGFKPVRHAVPMLSIRTETDTTAAGARAFDVRVRKELGLAPADPPVEY 117 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEV 187 E K DG I +RYE G V AA RGDG +GEDV+ +R + TIP L + P ++EV Sbjct: 118 AAELKFDGLAINLRYEAGVLVAAATRGDGETGEDVTQNVRTVRTIPLRLHGDAPPAVLEV 177 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT 246 RGEV++ ++DF N + A G+ NPRN A+G +R+L+P R L+F+ +GLG+ Sbjct: 178 RGEVFMRRDDFERYNAQQRAAGKPTLVNPRNGAAGSIRQLDPAIAGQRPLSFYAYGLGEV 237 Query: 247 --SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 L ++ LG PV+ N ++++++++ + R LP+DIDG+VY Sbjct: 238 VGWPDAPATHGATLDALQGLGVPVSAERCVCNGVDDLIAFHDDIAARRDQLPFDIDGVVY 297 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ F+LQ++LG R PRW ++HK+ ++ T +L I + +GRTG LTPVARL PV +G Sbjct: 298 KVNAFALQRELGFLTREPRWAVAHKYPAQEQLTTVLGIGVHVGRTGALTPVARLAPVFVG 357 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +TNATLHN+D I +D RVGD V+V+RAG+VIP++V ++ R Sbjct: 358 GVTVTNATLHNQDEIDR-----------KDTRVGDTVIVRRAGDVIPEIVATVLERRPQP 406 Query: 425 AQP----FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 P CP C S VVR A RCTGGL C AQ+ + L HF SR A Sbjct: 407 EPPRFNILQSYPVCPECGSHVVRLEGE------AVARCTGGLYCPAQRKQALLHFASRRA 460 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +I+G+G++ +D E +R PAD++ L + + S NL Sbjct: 461 MDIDGVGEKLVDQLVSRE----LVRTPADLYRLPLETLAG------LERMAEKSARNLIQ 510 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 +I ++ +L RFI++LGIR+VG AR LA+++ + L+ Sbjct: 511 AIETSKSTTLARFIYALGIRNVGETTARDLARHFGALDALLGANETA----------LLG 560 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQ 659 V VG I+AQ+I +F+ P N+ V L + + K LV TGTL Sbjct: 561 VRDVGPIVAQSIAQFFAEPHNLEVVGKLRALGVHWPETTGMQQSGGILSGKTLVLTGTLP 620 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 + R +A+E + G V+ +S+KTD ++ G+ GSKL KA++LGV I Sbjct: 621 ALTRDQAKERIESAGGKVAGSVSKKTDYVVAGEEAGSKLAKARELGVTI 669 >gi|298372045|ref|ZP_06982035.1| DNA ligase, NAD-dependent [Bacteroidetes oral taxon 274 str. F0058] gi|298274949|gb|EFI16500.1| DNA ligase, NAD-dependent [Bacteroidetes oral taxon 274 str. F0058] Length = 670 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 218/714 (30%), Positives = 357/714 (50%), Gaps = 46/714 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ +++ L +EI H+ YY + P I D E+D ++ +++ A+P+ D Sbjct: 1 MANTDIEQQIIKLRKEIEAHNHAYYVDNNPTISDFEFDMRLKQLESMEKAYPEYF---DK 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++G ++ S ++ H P LSL ++ ++ +F R+ + + E Sbjct: 58 NSPTQRVGSDLTKSFKQIVHQYPMLSLANTYSEGEVTEFYNRVRKSL----NTDFDVVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG I++ YE G+ A RGDG G+DV+A IR I +IP L + P E+RGEV Sbjct: 114 LKYDGASISLIYENGELAAAVTRGDGVRGDDVTANIRTIQSIPIRLCGDFPSRFEIRGEV 173 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 + F LN E G +ANPRNAASG L+ NP+++ R E+ A Sbjct: 174 LMPFAVFDELNREKAENGEPLFANPRNAASGTLKLQNPSEVARRRLDSYLYYLLGEELPA 233 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + Y+ + + GF ++N +R + I + + R LP DG+V KV++ Sbjct: 234 ETHYDNMMAAKTWGFKISNAIRCCRSLDEIFDFIRYWDTERRNLPVATDGIVLKVNDLRQ 293 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+ LG A+SPRW I++K+ ++A TRL + Q+GRTG +TP+A LEPV + G + A Sbjct: 294 QRNLGLTAKSPRWAIAYKYQAERALTRLNSVSYQVGRTGAVTPIANLEPVLLSGTTVKRA 353 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHN D I GL D+ +GD V V++ GE+IPK+ + R FP Sbjct: 354 SLHNADIIAGL-----------DLHIGDMVFVEKGGEIIPKITGVDTEAREAYMPKVVFP 402 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C S +VR+ + AAH C C Q ++ HFVSR A +I GLG + + Sbjct: 403 QCCPECGSALVRNEDE------AAHYCPNEDHCPPQIKGKILHFVSRKAMDIIGLGDETI 456 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F+ + ADI+ L + I + G+ S N+ D I + I Sbjct: 457 ALLFEKS----LVGNVADIYEL------KISDIAPLERLGEKSAQNIVDGIEASKQIPYP 506 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 IF+LGIR+VG +A+ LAK + S + + LI+V +G++IA++ Sbjct: 507 NVIFALGIRYVGETVAKRLAKAFPSIEQLEEAT----------LEQLIQVDEIGEVIARS 556 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +V+++ + + L + +S+ +E K +V +G K R + ++ + Sbjct: 557 VVDYFAKEEHRQLISRLKAAGIRLAADEQPGHISALLEGKTVVISGVFAKHSRDEYKDMI 616 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 Q G S +S KT ++ GDN G +KL+KAQ+LG++++ E++FL ++ + Sbjct: 617 EQNGGKNSGSISAKTSFVLAGDNMGPAKLDKAQKLGIRLVTEDEFLEMIAKQKD 670 >gi|303228999|ref|ZP_07315809.1| DNA ligase (NAD+) [Veillonella atypica ACS-134-V-Col7a] gi|302516413|gb|EFL58345.1| DNA ligase (NAD+) [Veillonella atypica ACS-134-V-Col7a] Length = 666 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 229/704 (32%), Positives = 365/704 (51%), Gaps = 46/704 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L++E+++ YY P + D EYD R + + P+ P+ P + Sbjct: 4 KDRIEQLQKELTHAQYLYYVKDNPTMSDFEYDQKYRELVDLETSHPEYIV---PSSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + + KV H P LSL +++ +D+R F R+ + + + LE KIDG Sbjct: 61 VGIKADGPFEKVVHGRPMLSLSNVFSADDVRAFDQRVTKELG---HQTKAYVLELKIDGL 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G FV A RGDG GEDV+A +R I +IP L N PE IE+RGE Y+ ++ Sbjct: 118 AVNLHYENGIFVRAVTRGDGKVGEDVTANVRTIKSIPLYL-ENAPEFIEIRGEAYMPHSE 176 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N+E G + NPRNAA+G LR+ +P +R L FF + +G S Q E Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSESGANIHTQEE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L + F VN R T ++ N R LPYD DG+V KV++F Q+ LG Sbjct: 237 LLHTLENFHFSVNPHYRVCKTVDEVIEAINYWGEKRHELPYDTDGMVIKVNDFDDQEVLG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ P+W ++K+ ++ T + DI I +GRTG+LTP LEPV + G ++ TLHN+ Sbjct: 297 STAKDPKWATAYKYPPEEVETIVKDITINVGRTGVLTPTGELEPVFVSGTNVSRVTLHNQ 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+I +DIR+GD VL+ +A E+IP+V+ ++ +R PF+ P CP+ Sbjct: 357 DFI-----------TEKDIRIGDHVLIHKAAEIIPEVIRVLPEKRTGSEVPFTIPDHCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C+S VR AA RCT C A + E++ HF SRDA NI+GLG ++ Sbjct: 406 CESPAVRRDGE------AAIRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + I D++ L G S NL +I ++ L+R +F Sbjct: 459 EK----LITNVVDLYHLTTESIMGM------DRMGKKSADNLVKAIADSKSRGLDRVLFG 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR +G++ A ++A S F L+ V +G +A +I+E+ Sbjct: 509 LGIRLIGSKAAGTIANVVKSMDRFLTITK----------DELVAVEEIGPTMADSIIEYR 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 ++P++I + L+ ++ +E+E + +V TG L+ + R +A + + + GA Sbjct: 559 EDPQHIEIINGLIDAGLKMDVDVQETAGNEMEGETVVLTGKLEVMGRSEAGKLLEKHGAK 618 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 V+ +S+KT ++I G++ GSKL KA +LG++++NEE+F LL+ Sbjct: 619 VTGSVSKKTTLVIAGEDSGSKLTKANELGIRVINEEEFTELLRD 662 >gi|322437173|ref|YP_004219385.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX9] gi|321164900|gb|ADW70605.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX9] Length = 704 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 233/741 (31%), Positives = 363/741 (48%), Gaps = 74/741 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S +++ L +++ +H+ YY P + D +YD+L R A+ P++ S Sbjct: 1 MSKGSVEEQVKELREQLEHHEHLYYVMDTPELTDGQYDSLMNRLKALEAEHPEMVTS--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG+ KV HS P LSL+ +N EDLR + R+ ++ +T E Sbjct: 58 DSPTQRVGGKPADGFQKVKHSRPMLSLDNAYNEEDLRAWDVRVRGGL--PGTEAVAYTCE 115 Query: 132 PKIDGTMITIRYE----KG-KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE--- 183 K+DG + + Y G + RGDG +GEDV++ +R I +IP +S + Sbjct: 116 LKLDGLSLALHYRGASHDGSQLERGLTRGDGTTGEDVTSNVRTIRSIPLTISAAKLKAAG 175 Query: 184 ---IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFF 239 EVRGE + FL +N+E A G ANPRNAA+G +R L P R L+F+ Sbjct: 176 LPMEFEVRGECVMPHAAFLKMNEEFEAAGLAAKANPRNAAAGTIRTLEPNIVAQRRLDFY 235 Query: 240 VHGL--GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 + L + E+ Q E L + G VN V ++ G+ + + +R +L Y Sbjct: 236 AYFLLQAEGGEMLLGSQSEALTALGKAGMRVNPQVATVDSIDGVWEFIQRCEPLRDSLGY 295 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 +IDG+V KVD+ + Q++LG ++PRW I++KFA + T+L + Q+GRTG +TPVA+ Sbjct: 296 EIDGIVIKVDKAAQQRRLGFTGKAPRWAIAYKFAARAGVTKLEGVAFQVGRTGKVTPVAQ 355 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 L PV IGG + ATLHN D I L +R+GD V V+R G+VIPK+ ++ Sbjct: 356 LSPVFIGGTTVKRATLHNPDEIVRL-----------GVRIGDFVSVERGGDVIPKITGVV 404 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 + + Q FP CP C S +V++ RC +C A+ E L HF + Sbjct: 405 LEKPRG-TQEIVFPECCPACGSALVKEEGE------VDWRCVNA-SCPARLREELIHFGA 456 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPA-------------------FSIRIPADIFTLQRRQQ 518 R NIEGLG + + A +R AD++ L + Q Sbjct: 457 RGVMNIEGLGDAMVGQLLGQVEDAVDETDIEKEEAAAPVTVREPLVRSIADLYRLTKEQL 516 Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578 + GD S L D I K + L R + LGIRHVG A LA ++ + + Sbjct: 517 VG------LERVGDKSAQALLDEIAKSKKAPLSRVLLGLGIRHVGQRTAELLASHFGAIE 570 Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638 L++V +G I+A + +F+ +N V+ LL E+ + Sbjct: 571 PLMGATQ----------DELVQVNEIGPIVAATVHDFFAQEQNQALVKELL-EIGLEMKA 619 Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698 ++ ++ +E V TGTL + R A+E + G VS +S+KTD ++ G++ GSKL Sbjct: 620 EKRVTTTVLEGLTFVLTGTLPTLTREIAKEKIEAAGGRVSGSVSKKTDYVVAGEDAGSKL 679 Query: 699 EKAQQLGVKIMNEEQFLFLLQ 719 EKA+ LGVK+++E L LL+ Sbjct: 680 EKAESLGVKVVDEAGLLELLE 700 >gi|328885211|emb|CCA58450.1| DNA ligase [Streptomyces venezuelae ATCC 10712] Length = 726 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 218/736 (29%), Positives = 353/736 (47%), Gaps = 61/736 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +AR++ + L ++I H YY +P+I D E+D L R +A+ +P+L P+ Sbjct: 9 PAEAREKHAELAEQIEEHRFRYYVKDQPVISDGEFDKLLRALEALEEEYPEL---RTPDS 65 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+ G+ V H LSL+ ++ E+L + R+ R D + + E K Sbjct: 66 PTQKVAGQYETDFTSVEHRERMLSLDNAFDDEELTTWADRVARDVGTPDFH---YLCELK 122 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG + + YE G+ AA RGDG +GED++ +R I IP L + P+++E+RGEVY Sbjct: 123 VDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIADIPERLRGDRVPDLVEIRGEVY 182 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 F LN ++ G KP+ANPRNAA+G LR+ +P +R L+ VHG+G Sbjct: 183 FPMEAFEGLNARLVEAGDKPFANPRNAAAGSLRQKDPKVTASRPLHMVVHGIGAREGFDI 242 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + + + G P + + + + R ++ ++IDG+V K+DE L Sbjct: 243 SRLSDTYELLHEWGLPTAKHNKVVGSLGEVREFIAYFGENRHSVEHEIDGVVVKLDEIPL 302 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG AR+PRW I+ K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ + A Sbjct: 303 QGRLGSTARAPRWAIAWKYAPEEVNTKLIDIKVGVGRTGRVTPYAQVEPVTVAGSEVEFA 362 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN++ +K + + +GD V++++AG+VIP+++ + + R + F P Sbjct: 363 TLHNQEVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMP 411 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK--- 488 + CP C + + + RC C AQ ERL R +IE G Sbjct: 412 AECPECGTPLKAM-----KEGDIDLRCPNARTCPAQLRERLFFLAGRQCLDIENFGAVAA 466 Query: 489 ---------------QQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTSTTK-----IEN 526 + D F + + I+ L RR + + N Sbjct: 467 AALTRPLEPAEPPLVDEGDLFDLTIEQLLPIKAYVLDPDSGLPRRDPKTGEEKIVTVFAN 526 Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 G + + ++I + L RFI L IRHVG A +LA+ + S + Q Sbjct: 527 QKGEPKKNALAMLENIAAAKTRPLARFINGLSIRHVGPVAAEALAREFRSLERIEQASE- 585 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVS 644 L V VG IIA A+ +++ + V E Sbjct: 586 ---------EELAAVDGVGGIIAAAVKQWFSEEWHREIVRKWRAAGVSLEDEGAGEDVGP 636 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 +E +V TGTL+ R A+E + LGA V+ +S+KT ++VG+NPGSK +KA QL Sbjct: 637 RPLEGLTVVVTGTLENFTRDGAKESLQSLGAKVTGSVSKKTSFVVVGENPGSKYDKAMQL 696 Query: 705 GVKIMNEEQFLFLLQQ 720 V +++E+ F LL+Q Sbjct: 697 KVPVLDEDGFKVLLEQ 712 >gi|317495223|ref|ZP_07953593.1| DNA ligase [Gemella moribillum M424] gi|316914645|gb|EFV36121.1| DNA ligase [Gemella moribillum M424] Length = 663 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 241/708 (34%), Positives = 387/708 (54%), Gaps = 48/708 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++E+ L ++ + YY P I D+EYD L ++ + + +P+ N Sbjct: 1 MEHIKEEIFKLVALLNKYSYDYYVEDNPQISDTEYDTLYKQLEKLEQEYPEFILD---NS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + KV H +P LSL ++IEDLR F +RI + D+SI + E K Sbjct: 58 PTQRVGDRVLDEFEKVIHKVPMLSLSNTFSIEDLRDFDSRISK---LSSDDSIEYICELK 114 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I+I YE GK V AA RGDG GE+V+ I+ I +IP +L + EVRGEVY+ Sbjct: 115 IDGLAISINYENGKLVSAATRGDGMVGENVTENIKTIFSIP--KTLKTKKSFEVRGEVYL 172 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 K F LN E +ANPRNAA+G LR+L+ + Sbjct: 173 PKKSFELLNKEREENNEVLFANPRNAAAGSLRQLDSKIT-AKRRLSAFIYSVVGDENINS 231 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q L +G PVN + T +V Y + + LPY+IDG+V KV+ +SLQ+ Sbjct: 232 QKMALTVAADVGLPVNPNFKLCKTIDEVVDYIMYWEEHKQDLPYEIDGIVIKVNSYSLQE 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 ++G +SPRW ++KF E++ +T+LLDI++ +GRTGI+TPVA L P+NI G+ ++ A+L Sbjct: 292 EIGSTQKSPRWATAYKFPEEELATKLLDIELSVGRTGIITPVAVLNPINISGSTVSKASL 351 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN+D I L DI +GD V+VK+AGE+IPKVV ++ R +++ + P+ Sbjct: 352 HNKDIIDEL-----------DIHIGDMVVVKKAGEIIPKVVRVVEELRLANSEKYVMPNI 400 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C+S+ + C Q + ++ HF SR+A NIEGLG + + Sbjct: 401 CPSCESKTFTKEGDPFTR-------CLNPDCPEQNIRKIIHFASREALNIEGLGDKVVAT 453 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ I+ D+F+L R K+ + GD SV NL ++I + SL++ Sbjct: 454 LYEK----GIIKHTIDLFSLDR------NKLVELERMGDKSVDNLLNAIENSKQSSLDKV 503 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGI +VG + + LA+YY + NF++ L+ +P +G I A++IV Sbjct: 504 IFALGILNVGKKAGKILAEYYKNLTNFSKAT----------VDELLELPDIGLITAESIV 553 Query: 614 EFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 ++ N N+ + L++ +P KN+ + K +V TG L ++ R++A+EY+ + Sbjct: 554 DYLSNDNNLRFINELIEIGMNPQYEIQNKNIDNIFSGKTIVLTGKLVELTRNEAKEYLER 613 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 GA V+ ++ KTD +I G+ GSKL KA+QLG+++++E++F+ ++++ Sbjct: 614 FGAKVTGSVTSKTDYVIAGEKAGSKLAKAEQLGIQVLSEDEFIDIMKE 661 >gi|120611505|ref|YP_971183.1| DNA ligase [Acidovorax citrulli AAC00-1] gi|166215380|sp|A1TR21|DNLJ_ACIAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|120589969|gb|ABM33409.1| DNA ligase, NAD-dependent [Acidovorax citrulli AAC00-1] Length = 732 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 259/749 (34%), Positives = 380/749 (50%), Gaps = 89/749 (11%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++L ++ YY P + D+EYD + + A+ A P+L P+ P ++ Sbjct: 22 RAAALRAQLHQWAHQYYVLDAPTVPDAEYDRVFQALQALETAHPELV---TPDSPTQRVI 78 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKDD-NSIFFTLEPKIDG 136 G + L V H++P LS+ + E F R+ R + D + + EPK DG Sbjct: 79 GAVMEGLTPVRHTVPMLSIRTETDTEASGAETFDARVRRELKLAPDAPPVEYVAEPKFDG 138 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTI----PRVLSLNIPEIIEVRGEVY 192 +++RYE G+ V AA RGDG GEDV+ IR I I P +P ++EVRGEVY Sbjct: 139 LAMSLRYENGRLVQAATRGDGEVGEDVTHNIRTIRQIPLTLPTGGRYGVPPVLEVRGEVY 198 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSE--- 248 + + DF LN+ G K + NPRNAA+G +R+L+ R L+FF +GLG + Sbjct: 199 MRRADFDRLNERQREAGGKTFVNPRNAAAGAVRQLDSGIAAQRPLSFFAYGLGDITPAAE 258 Query: 249 --IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ML++++ GFPV VR A +V+++ E+ + R LPYDIDG+VYKV Sbjct: 259 GGPDFATHFDMLRQLKAWGFPVAAQVRTARGASELVAFHQEVGASRDQLPYDIDGVVYKV 318 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQ+QLG R PRW ++HK+ ++ TR+ ID+Q+GRTG LTPVARL PV +GG Sbjct: 319 NSLALQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDVQVGRTGKLTPVARLAPVFVGGV 378 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV------------- 413 +TNATLHN I+ + +RVGD+V+V+RAG+VIP+V Sbjct: 379 TVTNATLHNLFEIRK-----------KGVRVGDQVIVRRAGDVIPEVVGTVPAALLPVAG 427 Query: 414 ----------------------VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 R P F P CPIC S VVR+ Sbjct: 428 ALQGSDALADAASGADGTAPGADAARAAPRSPYVPNFRMPRQCPICGSTVVREKGE---- 483 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A HRCTGGL C AQ+ E L HF R A +IEGLG++ +D + IR D++ Sbjct: 484 --ANHRCTGGLFCPAQRKEALLHFAQRRAMDIEGLGEKLVDQLVE----GQVIRTLPDLY 537 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 L T + ++ + S N+ ++ K ++ +L RF+F LGIRHVG A+ LA Sbjct: 538 RL------GLTALSSLDRMAEKSAQNVLAALEKSKHTTLPRFLFGLGIRHVGEATAKDLA 591 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK- 630 +++ L+ V VG ++A+AI F+ P N VE L Sbjct: 592 RHFGGLDAIMDA----------SVEQLLEVNDVGPVVAEAIHTFFAQPHNREVVEQLRAC 641 Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690 V+ G + + + K V TGTL + R A++ + GA V+ +SRKT ++ Sbjct: 642 GVTWKEGPPAERATLPLAGKTFVLTGTLPTLSREDAKDRLEAAGAKVAGSVSRKTHYVVA 701 Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G+ GSKL KAQ+LGV +++E L LLQ Sbjct: 702 GEEAGSKLAKAQELGVPVLDEAGMLALLQ 730 >gi|313114130|ref|ZP_07799682.1| DNA ligase, NAD-dependent [Faecalibacterium cf. prausnitzii KLE1255] gi|310623539|gb|EFQ06942.1| DNA ligase, NAD-dependent [Faecalibacterium cf. prausnitzii KLE1255] Length = 666 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 222/716 (31%), Positives = 355/716 (49%), Gaps = 51/716 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +E L +EQA+K + L I ++ YY P + D EYDAL R + FP L + Sbjct: 1 MELLELEQAKKRVEELRAVIEKNNRLYYDQDAPELEDFEYDALTRELKELEAQFPQLVTA 60 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P K+GG + L KVTH++ SL ++ ++LR F R+ + Sbjct: 61 ---SSPTQKVGGTASSKLPKVTHAVKMESLLDAFSYDELRDFDRRVRE-----AGIEPEY 112 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG ++ YE G+ V A+ RGDG GEDV+A +RAI +IP+ L PE +EVR Sbjct: 113 VVEIKIDGLSCSLEYENGELVRASTRGDGVVGEDVTANVRAIRSIPKKLKDA-PEFLEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTS 247 GEVY+ F L E G P+ NPRNAA+G LR+ + L+ FV + + Sbjct: 172 GEVYMPHGAFQKLCAEQELQGAAPFKNPRNAAAGSLRQKDARITGSRGLSIFVFNVQQIR 231 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E L ++ LG PV+ + ++ ++ R+ L +D+DG V KV+ Sbjct: 232 GKTLTKHAESLDYLKSLGLPVSPRYHIVHDIEQAIAEIEQIGQNRAKLDFDMDGAVIKVN 291 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +F+ + +G + PRW I+ K+ + T L I++ +GRTG+LTP A +PV + G Sbjct: 292 DFAQRDLMGSTNKFPRWAIAFKYPPEVKETTLRSIEVAVGRTGVLTPTACFDPVFLAGTT 351 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATLHNED+I + +GD + V++AG++IP+V+ + + DAQP Sbjct: 352 VARATLHNEDFIHQF-----------GLCIGDTIQVRKAGDIIPEVIGVTHHA--EDAQP 398 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + P+ CP C + VV + AA RC + + HF SRDA +IEGLG Sbjct: 399 YEMPTVCPSCGAPVVHLEDE------AALRCVNPECPAQAL-RNIIHFASRDAMDIEGLG 451 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + + + ADI+TL R Q + + F + S NL ++I + Sbjct: 452 TAVATQLVEKD----MVHSAADIYTLTREQLLT------LDKFKEKSADNLLNAIEASKQ 501 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L++ +F GIR++G + A LA+++ + Q + + + G + Sbjct: 502 NNLDKLLFGFGIRNIGDKAAALLAEHFGTLQAVREA----------SAEQISEIDGFGGV 551 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +AQ++VEF+ V L + E ++ K LV TGTL+ + R++A+ Sbjct: 552 MAQSVVEFFAKEGTTDLVHRLADAGLNMQWKGEPKGD-KLAGKTLVVTGTLETLSRNEAE 610 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 + + G S +S+KT ++ G GSKL KAQ LG+ ++ E +FL ++ N Sbjct: 611 ALIVKNGGKASGSVSKKTAYVVAGTAAGSKLTKAQVLGIPVLTEAEFLAMISDENI 666 >gi|332188479|ref|ZP_08390201.1| DNA ligase, NAD-dependent [Sphingomonas sp. S17] gi|332011491|gb|EGI53574.1| DNA ligase, NAD-dependent [Sphingomonas sp. S17] Length = 712 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 285/719 (39%), Positives = 408/719 (56%), Gaps = 56/719 (7%) Query: 26 QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS 85 +EI++H+ Y+ P I D++YDAL RR AI AFP L RS + P ++G Sbjct: 23 REIAHHNRLYHTEDAPEISDADYDALIRRNMAIEAAFPHLIRS---DSPNRQVGAAPAAH 79 Query: 86 LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEK 145 L KV H+ P SL+ ++ E++ +FI R+ R+ + DD + T EPKIDG ++RY Sbjct: 80 LAKVAHARPMTSLDNAFSDEEVEEFIGRVRRYLKLPDDEPVTLTAEPKIDGLSCSLRYVD 139 Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205 G+ V A RGDG GEDV+ +R I IP+ L P + EVRGEVY+SK DF ALN + Sbjct: 140 GRLVQALTRGDGTIGEDVTENVRTIADIPQSLPAPAPTVFEVRGEVYMSKVDFTALNARL 199 Query: 206 IA------VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 + +ANPRNAA+G LR+ NP R L F HG G+ SE+ A+ Q++M+ Sbjct: 200 AQEAAETGKEARQFANPRNAAAGSLRQKNPAITAGRPLRFLAHGWGEASEVPAETQFDMV 259 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + R GFP+ + ++ Y +++ R+ LP+DIDG+VYKVD Q +LG Sbjct: 260 ETWRRWGFPIAEAFARVPDAAAALAVYRTIEAQRADLPFDIDGVVYKVDRLDWQARLGIV 319 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 R+PRW I+HKF ++A T L IDIQ+GRTG LTPVARLE V +GG ++TNATLHN D Sbjct: 320 GRTPRWAIAHKFPAERAQTTLERIDIQVGRTGALTPVARLEAVTVGGVVVTNATLHNADE 379 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I+ L +R GDRV+++RAG+VIP++ + RH +PF FP CP C Sbjct: 380 IERL-----------GVRPGDRVVLQRAGDVIPQI--VENLTRHVAREPFVFPDHCPECG 426 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S R RCTGGL C AQ++ERL HFVSR AF+I GLG +++ FF+ Sbjct: 427 SLATRGEGE------VVIRCTGGLICPAQRVERLIHFVSRHAFDITGLGLVRVEEFFRD- 479 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I PADIF L + ++ + ++ V L +I+ RR+ISL+RF+F+LG Sbjct: 480 ---GLIASPADIFRLAQHREALIQR----ERMSELVVDKLLAAIDARRDISLDRFLFALG 532 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL----------------IRVP 602 IRHVG AR LA+ ++S F I+ + + +L + Sbjct: 533 IRHVGEITARDLARRFVSMAGFRAMIDAALQVRAETVPALGEPERKFELRRQRAIVAAID 592 Query: 603 --LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 +G +A A+++F+ N V+ LL EV+P+ H+ S++ K LVFTGTL+ Sbjct: 593 TPQIGPEVADALLDFFAEEHNRDVVDDLLSEVTPADVVHQTR-ESDVSGKTLVFTGTLET 651 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R +A+ LGA VS +S KTD++I G GSKL+KAQ LG+ +++E + L+ Sbjct: 652 LSRDEAKAQAEALGARVSGSVSAKTDLVIAGPGAGSKLKKAQDLGIPVIDEAAWNALVA 710 >gi|121611375|ref|YP_999182.1| DNA ligase [Verminephrobacter eiseniae EF01-2] gi|166216275|sp|A1WRA7|DNLJ_VEREI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|121556015|gb|ABM60164.1| DNA ligase, NAD-dependent [Verminephrobacter eiseniae EF01-2] Length = 693 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 252/723 (34%), Positives = 382/723 (52%), Gaps = 50/723 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + QA + +L +++ + Y+ P + D+EYD + A+ A P L Sbjct: 9 PDPAQMDPAQADARIRALREQLVHWAHQYHVLDAPSVPDAEYDRAFQALQALEAAHPALI 68 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKD-D 123 P+ P ++ G + L V H++P LS++ + + F R+ R D D Sbjct: 69 ---TPDSPTRRVQGAVLQGLTPVRHALPMLSIQTETDTGAGGAQAFDARVRRELGLTDAD 125 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 +I + +EPK DG + +RYE + V AA RGDG GEDV+ IR I IP L + P Sbjct: 126 PAIEYVVEPKFDGLAMGLRYENRRLVQAATRGDGEIGEDVTHNIRTIRQIPLGLPDDAPA 185 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHG 242 ++EVRGEVY+ + DF ALN A K + NPRNAA+G +R+L+ R L FF +G Sbjct: 186 LLEVRGEVYMRRADFDALNQRQRAQSGKTFVNPRNAAAGAVRQLDANITAQRPLRFFAYG 245 Query: 243 LGKTSEIF-----AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 LG + + Y +LQ ++ GFPV V A+ + + + ++ + R LPY Sbjct: 246 LGAVTAPGEGGPAWRTHYALLQTLKSWGFPVAEQVGIAHGASQLAALHEQIGARRDALPY 305 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+VYKV+ LQ+ LG + R PRW ++HK+ ++ TR+ I++Q+GRTG LTPVAR Sbjct: 306 DIDGVVYKVNALQLQRDLGFKTREPRWAVAHKYPAQEMPTRVEGIELQVGRTGKLTPVAR 365 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 L PV +GG +TNATLHN I+ + +RVGD V V+RAG+VIP+VV ++ Sbjct: 366 LAPVFVGGVTVTNATLHNLFEIRK-----------KQVRVGDTVTVRRAGDVIPEVVGVL 414 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 +R F P+ CP+C S VVR+ A HRCTGGL C+AQ+ E L HF + Sbjct: 415 PGQRSAYVANFRMPAHCPVCGSAVVREKGE------ANHRCTGGLFCAAQRKEALLHFAA 468 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R A +IEGLG + +D +E +R D++ L + + + S N Sbjct: 469 RRALDIEGLGDKLVDQLVDAE----LVRGLPDLYRL------DLVALSALDRMAEKSAQN 518 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L D++ K R +L RF+F LG+RHVG A+ LA+++ + Sbjct: 519 LLDALEKSRQTTLPRFLFGLGLRHVGEATAKDLARHFGTLDAIMNA----------SVEQ 568 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTG 656 L++V +G ++AQ++ F+Q P N V L + G + + + K +V TG Sbjct: 569 LLQVSDIGPVVAQSLHCFFQQPHNREVVAQLRACGLRWPEGAPPERPAQRLAGKSVVLTG 628 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL + R A++ + GA V+ +S+KT +I G GSKL KA++LG+ +++E L Sbjct: 629 TLPTLGRDAARDLLEAAGAKVTGSVSKKTSYLIAGAEAGSKLAKARELGIPVLDEAGMLA 688 Query: 717 LLQ 719 LL Sbjct: 689 LLA 691 >gi|261854791|ref|YP_003262074.1| DNA ligase, NAD-dependent [Halothiobacillus neapolitanus c2] gi|261835260|gb|ACX95027.1| DNA ligase, NAD-dependent [Halothiobacillus neapolitanus c2] Length = 685 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 252/715 (35%), Positives = 374/715 (52%), Gaps = 48/715 (6%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 A S + R L +L EI H+ YY P I D+ +D L R I A P+ Sbjct: 10 SAPSEDGDRARLLALRDEIERHNFRYYVLDDPEISDAAFDRLMRELQQIESAHPEWI--- 66 Query: 70 DPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ P ++G VTH LSL+ ++++E+ F RI ++ D + F Sbjct: 67 TPDSPTQRVGSPTFTTRFAPVTHHQAMLSLDNVFSVEEWDAFTQRIQDRLKR--DAPLVF 124 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP--EIIE 186 EPK DG I + Y +G+ V AA RGDG +GEDV+ +R I IP+ L ++ +++E Sbjct: 125 AAEPKFDGLAINLIYRQGQLVQAATRGDGQTGEDVTLNVRTIAAIPQQLPDSLLSCDLLE 184 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGE+ +S F ALN A G K + NPRNAA+G LR+ +P R L FF +G+G Sbjct: 185 VRGEIVMSHKAFAALNAAADARGDKRFVNPRNAAAGSLRQKDPRITAKRQLQFFAYGVGA 244 Query: 246 TSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 Q +L + LGF V+ R+ +++Y EM + RS L YDIDG+V+ Sbjct: 245 VDGADLPDSQLGLLDWLADLGFTVSEWRRRCEGRDEVLAYQQEMSARRSQLDYDIDGVVF 304 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 K++ S Q LG A++PRW I+ KF ++A++R+ +D Q+GRTG LTPVAR++PV +G Sbjct: 305 KINAQSEQDALGFVAKAPRWAIAFKFPAEEATSRVHAVDFQVGRTGALTPVARIDPVFVG 364 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++N TLHN D I +DIR+GD V+V+RAG+VIP+VV ++ R D Sbjct: 365 GVTVSNITLHNIDEITR-----------KDIRIGDTVVVRRAGDVIPEVVRVLPELRPAD 413 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+ + P+ CP+C S VVR A RC+GGL C AQ+ E +KHF SR A NI+ Sbjct: 414 ARLVALPATCPVCGSEVVRAEGE------AIARCSGGLFCPAQRREAIKHFASRKAMNID 467 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++ ++ + + + D+F L Q + + G+ S NL D+++ Sbjct: 468 GLGEKWIELLLEHK----LVEHVDDLFHLTVPQVLT------LPRMGEKSAQNLVDALSA 517 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + +L RF+++LGIR VG A LA ++ + L VP V Sbjct: 518 AKQTTLPRFLYALGIREVGEVTAAGLAAHFRNLDALNAAT----------LEDLQAVPDV 567 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQR 663 G ++AQ + F + P N + L+ + ++ + + V TGTL + R Sbjct: 568 GPVVAQHVFTFLRQPHNQEVIRNLIDAGVHWPAIVATDANALPLAGRTYVLTGTLVGMSR 627 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A E + LGA VS +S KT +I G GSKL KA LGV +++E LL Sbjct: 628 EEAGERLKALGAKVSGSVSSKTTAVIAGSEAGSKLTKANDLGVPVLDETDLQKLL 682 >gi|313679715|ref|YP_004057454.1| DNA ligase, nad-dependent [Oceanithermus profundus DSM 14977] gi|313152430|gb|ADR36281.1| DNA ligase, NAD-dependent [Oceanithermus profundus DSM 14977] Length = 670 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 219/716 (30%), Positives = 363/716 (50%), Gaps = 50/716 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E+A + ++ L I H+ YY +P I D+EYDAL R + AFP+L P Sbjct: 1 MTREEAARRVAELTWAIRRHNHLYYVLDRPEISDAEYDALVRELAELEAAFPEL---RSP 57 Query: 72 NGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P N++G + S VTH P SL+ + +++ F R+ R + + + L Sbjct: 58 ASPTNQVGAGVLGASFEPVTHPTPLYSLDNAFGPDEIAAFEERVARALGTE--PPLEYAL 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG I + YE G+ V+ A RG+G GE+V+ + + +P L P +EVRGE Sbjct: 116 EYKIDGLSINLLYEGGRLVWGATRGNGRVGEEVTQNLLTVRDVPSRLEGAPP-RLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS-E 248 VY+ + FL LN G P+ NPRNAA+G +R+ +P R L + +G+G+ + E Sbjct: 175 VYMPREVFLELNRAREEAGELPFKNPRNAAAGAVRQKDPRIAAERRLAAYFYGVGEGAAE 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + A+ Q E+L ++ LG PV R A G+ Y +M + R LP++ DG KV++ Sbjct: 235 LRARTQLELLDRLEALGLPVEPHRRSAVGAAGVEEAYRQMLARRDALPFEADGATVKVND 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q++LG A+SPRW +++KF ++ TR+ ++ Q+GRTG +TPVA L PV + G + Sbjct: 295 LEAQRRLGHTAKSPRWAVAYKFPAEEKETRIEEVVFQVGRTGRITPVAHLTPVQLDGTTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + TLHN+ +I+ L D RVGD V + ++G +IP+++ +I +R +P Sbjct: 355 SRVTLHNKAFIEEL-----------DARVGDAVRLHKSGGIIPEILRVIKEKRTGKEEPI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP C + + + HRC L C A+ ++L+H+ SR A +++GLG+ Sbjct: 404 VFPYHCPECGANL--------VEDGKIHRCPNPL-CPAKAFQQLRHWASRRAMDVQGLGE 454 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + ++ AD++ L + + G+ S NL + + + Sbjct: 455 KLIEQLLEK----GLVKDAADLYRLGKEDLAG------LERMGEKSAENLLVQLEESKGR 504 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 LER ++ LGI VG +AR+LA+ + + + + L VP VG + Sbjct: 505 GLERALYGLGIPQVGEALARTLARRFGTIEKLMEAGE----------EELEAVPDVGPVT 554 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A I + R + L + + + + +V TG L + R + +E Sbjct: 555 AAEIRRALADERMRSLIRRLKEAGVSFEAKQAQPAEQPLAGLTIVLTGELSR-PRSEVKE 613 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 + LGA V+ +SRKT ++ G GSKL+KA++LGV +++E LL + Sbjct: 614 ELEALGAKVAGSVSRKTSYVVAGPGAGSKLKKARELGVPVLDEAGLAALLAERGAA 669 >gi|170079241|ref|YP_001735879.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7002] gi|254781436|sp|B1XLV0|DNLJ_SYNP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169886910|gb|ACB00624.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7002] Length = 678 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 227/699 (32%), Positives = 355/699 (50%), Gaps = 53/699 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 L+ L ++ YY P + D+ YD L R A+ A P L P+ P +IG Sbjct: 8 RLAQLRSQLQKAAYAYYVLDAPFMEDAVYDQLYRELVALETAHPQLI---TPDSPTQRIG 64 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + V H+IP SLE ++ +L ++ R R + + + E KIDG+ I Sbjct: 65 DQPATQFTSVKHNIPLYSLENAFDFGELTQWEQRWQRALAGEIPSDSGYVCELKIDGSAI 124 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDF 198 + YE G V A RGDG +GE+++ +R I TIP L+ N P ++EVRGE ++ F Sbjct: 125 ALTYENGILVRGATRGDGVTGEEITQNLRTIRTIPLRLNLDNPPPLVEVRGEAFLPLETF 184 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKG---Q 254 +N E G +ANPRNAA+G LR+L+ R L+FF + L + Q Sbjct: 185 EKINQEREKAGENLFANPRNAAAGTLRQLDSRIVAARKLDFFAYTLHLPESHNSPQLNSQ 244 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E L+ ++ +GF VN + +Y+ + R LPY DG+V K+++FSLQ + Sbjct: 245 WEALEFLKKMGFRVNPNRELCPNLTAVKNYFEKWDEGRKKLPYLTDGVVVKLNDFSLQAE 304 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG + PRW I+ K+A ++A T + DI + +GRTG +TP+A +EPV + G + ATLH Sbjct: 305 LGFTQKFPRWAIALKYAAEEAPTTVKDIIVNVGRTGAVTPMAVMEPVQLAGTTVQRATLH 364 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED IK L D+R+GD V++++AGE+IP+V+ ++V+ R P+ FPS C Sbjct: 365 NEDRIKEL-----------DLRIGDTVVIRKAGEIIPEVLRVLVDLRPEATIPYEFPSHC 413 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S +VR A RC +C A L H+ RDA +I+GLG++ + Sbjct: 414 PECNSALVRPPGE------AVARCVNS-SCPAILRGSLVHWAGRDALDIQGLGEKNVILL 466 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + ++ ADI+ L Q S + G S NL +I +N R + Sbjct: 467 IEH----GLVQSIADIYDLTSEQLQS------LPRMGQKSAANLIQAIAHSKNQDYARVL 516 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + LGIR VG A LA+ + + + + + L V +G+ IAQ++V+ Sbjct: 517 YGLGIRFVGKVNAEILAQNFPTLEQLQKA----------SFAQLQGVYGIGEEIAQSVVD 566 Query: 615 FYQNPRNICAVEALLKEV-------SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +++ N +E L + + + + +I K V TGTL ++R +A Sbjct: 567 WFRVDANQQLIEKLQQAGLTFAQTQTAQTQTAQTQANHQISGKTFVITGTLPTLKRTEAA 626 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 E + G V++ +S+ TD ++ GDN GSKL+KA+QLG+ Sbjct: 627 EKIKAAGGKVTSSVSKNTDYLVAGDNAGSKLDKARQLGI 665 >gi|282856148|ref|ZP_06265431.1| DNA ligase (NAD(+)) [Pyramidobacter piscolens W5455] gi|282585907|gb|EFB91192.1| DNA ligase (NAD(+)) [Pyramidobacter piscolens W5455] Length = 681 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 229/706 (32%), Positives = 352/706 (49%), Gaps = 46/706 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + L E++ H YY P I D EYDAL R PDL R + P Sbjct: 7 EKLDRYYWLVDELNRHGRLYYVLDAPEIEDDEYDALMREMLQFEREHPDLIRD---DSPS 63 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + + KVTH+ P LSLE +++ +L ++ R + I + E KID Sbjct: 64 KRVGGAVLDAFEKVTHAKPMLSLEDVFSKNELHDWLQRAAEGVGQPW---IPWCCELKID 120 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +++ +E GKFV A+ RGDG GEDV+ ++ + +P L ++P +E+RGEVY+ K Sbjct: 121 GLAVSLIFEDGKFVQASTRGDGVVGEDVTENLKTVKDLPLRLLGDVPGHLELRGEVYMGK 180 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254 + F LN G +ANPRNAA+G LR+L+ + R L F + + Q Sbjct: 181 DGFAQLNAAREEAGLPLFANPRNAAAGSLRQLDTSVAAKRNLRLFTYYVQDAESYGLHSQ 240 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E+L+ ++ G PV R+A T + + R +LPY DG V+K D Sbjct: 241 SEILEWLKARGLPVQKAWRRAETETEALDFLERWSGERFSLPYATDGAVFKADATEYWTV 300 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++PRW +++K+ ++ T+L I+I +GRTG+LTPVA LEPV + G ++ A+LH Sbjct: 301 LGNNVKTPRWAVAYKYPPEERKTKLESIEISLGRTGVLTPVANLEPVLLSGTVVKRASLH 360 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N++ I+ +DIRVGDRV V++AGE+IP++V + V R +PF+ P+ C Sbjct: 361 NDEEIQR-----------KDIRVGDRVWVRKAGEIIPEIVRVDVASRTGTEEPFAMPATC 409 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C + V + + +C AQ + L HF SR NI+GLG + + Sbjct: 410 PVCGAAVAKLPGEVALR-------CLNRSCPAQLTQGLIHFASRQGMNIQGLGDRLAEQL 462 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 +S ++ +D++ L+ + + G+ S L +I K + L+ I Sbjct: 463 VRS----GLVKNFSDLYALRVE------PLVRLDRMGEKSAGKLLQAIAKSKERPLKFLI 512 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGIR VGA +A LAK + S A D L V VG +IA +I Sbjct: 513 TALGIREVGAGVAAELAKRFSSLDEIAAA----------DEERLAAVEGVGPVIAGSIKT 562 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+ N ++ L + + K VFTG L ++ R +AQE VTQ Sbjct: 563 FFGEEHNRRLIDGLREAGVSMRSETAPEAPIGPLAGKTFVFTGELSRMSRAQAQELVTQR 622 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G +S+KT ++VG+ PG K EKA +L V +NEE+F ++ Sbjct: 623 GGKSVNSVSKKTSYVVVGEAPGGKAEKALRLNVPTLNEEEFFAMID 668 >gi|300779557|ref|ZP_07089415.1| NAD-dependent DNA ligase LigA [Chryseobacterium gleum ATCC 35910] gi|300505067|gb|EFK36207.1| NAD-dependent DNA ligase LigA [Chryseobacterium gleum ATCC 35910] Length = 667 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 216/712 (30%), Positives = 361/712 (50%), Gaps = 48/712 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E ++++ L +E+ H++ YYQ P I D E+D L + + +P+ D Sbjct: 1 MS-ENIQQKIEQLRKELHQHNENYYQLDTPTITDFEFDMLLQELQDLEARYPEF---YDE 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++GG + + H SL+ ++ +DL + RI + D+ + F E Sbjct: 57 NSPTVRVGGGVTKVFPTIQHKFRMYSLDNSYDFDDLEDWEKRIIKTI----DDPVEFVAE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG I+I YE GK A RGDG G++++ +R I IP L + P +RGE+ Sbjct: 113 LKYDGASISILYENGKLSQAVTRGDGFQGDEITPNVRTISDIPLTLKGDFPAQFFMRGEI 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 Y+++ +F +N G P+ NPRN ASG L+ + ++ + V + E+ A Sbjct: 173 YLTRKNFDKINKLREEEGLDPFMNPRNTASGSLKMQDSAEVRKRGLSSVLYQFISDEVPA 232 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + +E+LQK + GF + + T + + + R LP++IDG+V KV+ Sbjct: 233 ESHWELLQKAQSWGFKTSQQAKLCKTMAEVQEFITFWDTERHNLPFEIDGIVLKVNSLQQ 292 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+QLG A+SPRW +++KF ++ T L + Q+GRTG +TPVA L+PV + G ++ A Sbjct: 293 QRQLGYTAKSPRWAMAYKFKAEKVETELQSVSYQVGRTGAITPVANLKPVLLAGTIVKRA 352 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHNED IK L D+ D V V++ GE+IPK+V + +R +++ + Sbjct: 353 SLHNEDIIKKL-----------DLHEHDFVYVEKGGEIIPKIVGVNTGKRTEESKEIEYI 401 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + +V+ + A H C L C Q + R+ H+VSR A NI+ LG + + Sbjct: 402 KHCPECGTELVKIED------QAIHFCPNELHCPPQVVGRMIHYVSRKALNIDNLGSETI 455 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + ++ I PAD + L + Q + + + S N+ I K + + E Sbjct: 456 EQLYRER----LIENPADFYVLTKEQ------LLPLERMAEKSAQNIITGIEKSKEVPFE 505 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + ++ +GI+HVG +A+ L K + + + L +V +G IA + Sbjct: 506 KVLYGIGIKHVGETVAKKLVKNFPTIEELKNAT----------IEELCQVEDIGTKIAVS 555 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEY 669 IV+F+QNP N+ +E L N S+ +E K +FTG L R A+E Sbjct: 556 IVDFFQNPENVLMIERLKSYGVQLEKGESTNEVLSNVLEGKTFLFTGKLSLFTRESAEEM 615 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQ 720 V + G + +S+ + +IVG+ GSKL+KAQ +G + I++E+QFL L+++ Sbjct: 616 VEKHGGKNISAVSKNLNYLIVGEKAGSKLKKAQDIGTITILDEQQFLDLIEK 667 >gi|120403104|ref|YP_952933.1| NAD-dependent DNA ligase LigA [Mycobacterium vanbaalenii PYR-1] gi|166216216|sp|A1T6X7|DNLJ_MYCVP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|119955922|gb|ABM12927.1| DNA ligase, NAD-dependent [Mycobacterium vanbaalenii PYR-1] Length = 707 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 217/719 (30%), Positives = 346/719 (48%), Gaps = 46/719 (6%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 + + R++ L E+ H YY PII D+E+DA+ RR +A+ A P+L Sbjct: 18 DDATEAGLRRQWQELADEVRDHQFRYYVRDAPIITDAEFDAMLRRLEALEEAHPEL---R 74 Query: 70 DPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ P +GG H LSL+ ++ ++L + RI + Sbjct: 75 TPDSPTQLVGGAGFATDFTAAEHLERMLSLDNVFTPDELAAWAARIRTEIGADA----QY 130 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEI 184 E KIDG +++ Y G+ A RGDG +GEDV+ R I +P L+ P + Sbjct: 131 LCELKIDGVALSLVYRDGRLERGATRGDGRTGEDVTLNARTIEDVPEKLTGTEEFPLPSV 190 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +EVRGEV+ DF LN ++A G+ P+ANPRN+A+G LR+ NP R L HGL Sbjct: 191 LEVRGEVFFRIADFEDLNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRRLRMICHGL 250 Query: 244 GKTSE---IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 G + + ++ + ++ G PV+ Q + R + ++ID Sbjct: 251 GHIEDAAGFPFRTLHDAYRALQAWGLPVSPHTAQVTGLDAVTERIAYWGEHRHDVEHEID 310 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V KVDE +LQ++LG +R+PRW +++K+ ++A T+LLDI + +GRTG +TP A +EP Sbjct: 311 GVVVKVDEVALQRRLGATSRAPRWAVAYKYPPEEAQTKLLDIRVNVGRTGRVTPFAYMEP 370 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V I G+ + ATLHN +K + + +GD V++++AG+VIP+V+ +V+ Sbjct: 371 VKIAGSTVGLATLHNGSEVKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVDL 419 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R + F P+ CP C + + + A RC C AQ ER+ H R A Sbjct: 420 RDGSEREFVMPTHCPECGTELA-----PAKEGDADIRCPNSRTCPAQLRERVFHVAGRGA 474 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 F+IEGLG + + A I D+FTL T G + L Sbjct: 475 FDIEGLGYEAAIALLQ----ARVITDEGDLFTLTADDLLRTDLFTTKAGELSANGKRLLT 530 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 ++ K + L R + +L IRHVG AR+LA + S L Sbjct: 531 NLGKAKAQPLWRVLVALSIRHVGPTAARALATEFGSLDAIVAASE----------EELAA 580 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 V VG IA A+ +++ + V+ + ++ ++ +V TG+L Sbjct: 581 VEGVGPTIAAAVTDWFTVDWHRTIVDKWRAAGVRMADERDASIERTLDGLSIVVTGSLTG 640 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +A+E + G + +S+KT ++ GD+PGSK +KA +LGV +++E+ F LL+ Sbjct: 641 YSRDEAKEAIIARGGKAAGSVSKKTAYVVAGDSPGSKYDKAIELGVPVLDEDGFRRLLE 699 >gi|227530245|ref|ZP_03960294.1| DNA ligase (NAD(+)) [Lactobacillus vaginalis ATCC 49540] gi|227349834|gb|EEJ40125.1| DNA ligase (NAD(+)) [Lactobacillus vaginalis ATCC 49540] Length = 680 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 238/722 (32%), Positives = 387/722 (53%), Gaps = 49/722 (6%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 Q IP+ L+++QA++E+ L ++I+ YY+ P + D YD +R I FP Sbjct: 3 NQSIPVAQLTLDQAKEEIGPLRKQIAQWGKEYYEQDSPTVEDYVYDRQYQRLVQIEQRFP 62 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 +L + P+ P ++GGE L KV H IP LS+ +++IE+L F R + D Sbjct: 63 EL---QTPDSPTQQVGGEAESQLTKVRHEIPMLSMGDVFSIEELMDFNHRQQE--NRDVD 117 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 + LE KIDG +++ YE GK + + RG+G+ GEDV+ +R I ++P+ L + Sbjct: 118 VEAEYNLELKIDGLSLSLVYENGKLIQGSTRGNGNIGEDVTENVRTIKSVPQELPEPLS- 176 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 +E RGE Y+ K F LN + G+ +ANPRNAA+G LR+L+P R L+ F++ Sbjct: 177 -VEFRGECYMPKESFAKLNAQREDDGQPIFANPRNAAAGSLRQLDPKVTAKRDLDTFMYY 235 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + + ++ Q E L +MR LGF VN R + I Y NE + R L Y IDG+ Sbjct: 236 VPEYQKLGVTTQAEALDRMRELGFKVNPHNRVVHNRQEIEDYINEYTAKRDQLAYGIDGI 295 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KV++ ++ LG + PRW I++KF ++ T + DI+ +GRTG +TP A ++PV Sbjct: 296 VEKVNDLETEEALGNTVKVPRWEIAYKFPPEEQPTIIRDIEWTVGRTGNVTPTAVMDPVQ 355 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G ++ A+LHN DY+K +D+R+GD V + +AG++IP++ + +++R Sbjct: 356 LAGTTVSRASLHNPDYLK-----------EKDVRLGDTVYLHKAGDIIPEISKVNLSKRP 404 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 D++P+ P+ CP C S +V + A RC + C AQ E L HF SR+A + Sbjct: 405 ADSEPYQIPTKCPACDSELVHLDDE------VALRCINPM-CPAQIKEGLAHFASRNAMD 457 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I GLG + ++ + + I A ++ L Q + + FG+ S TNL SI Sbjct: 458 IAGLGPKIIEQLWNKK----LIHDVAGLYALTEDQLLT------LDKFGEKSATNLLTSI 507 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 N RN S+ER +F LGIRHVGA+ AR + ++ + V Sbjct: 508 NNSRNNSVERLLFGLGIRHVGAKAARLIMAHFNDLDQLMGA----------SADEISAVD 557 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQ 659 +G I +++ ++ N + +E L + + SS+ K++V TG L Sbjct: 558 GIGPTIGESVETYFANEQVQSLIEELRQSGLNFTYLGSTTTVDESSDWNGKRVVLTGKLV 617 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ R +A++++ GA V+ +S+KTDI+I G+ GSKL KAQ+LGV + +E++F ++ Sbjct: 618 EMTRTEAKDWLEVHGAKVTGSVSKKTDIVIAGEKAGSKLTKAQELGVDVWDEQRFSQAMK 677 Query: 720 QY 721 + Sbjct: 678 EE 679 >gi|194016164|ref|ZP_03054779.1| DNA ligase, NAD-dependent [Bacillus pumilus ATCC 7061] gi|194012519|gb|EDW22086.1| DNA ligase, NAD-dependent [Bacillus pumilus ATCC 7061] Length = 668 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 238/715 (33%), Positives = 392/715 (54%), Gaps = 53/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E A++ + L Q ++ ++ Y+ +P + D+EYDA R ++ PDL + Sbjct: 1 MDKEAAKRRIEELHQILNQYNYEYHTLDRPSVPDAEYDARMRELISLEEEHPDLKAA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + + KV H P LSL +N +DL F R+ + + I + +E Sbjct: 58 DSPSQRVGGAVLDAFQKVRHGTPMLSLGNAFNEQDLLDFDRRVRQAVG----DDIAYNVE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG +GED++ ++ I +IP L + P IEVRGE Sbjct: 114 LKIDGLAVSLRYENGLFVRGATRGDGTTGEDITENLKTIRSIP--LKIKRPLSIEVRGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 ++ K F ALN++ + +P+ANPRNAA+G LR+L+ R L+ FV+ + + EI Sbjct: 172 FMPKPSFEALNEKRLQNEEEPFANPRNAAAGSLRQLDTKIAAKRNLDIFVYSIAELDEIG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + Q E L + LGF N R T ++ +K+ R+ Y+IDG+V KVD + Sbjct: 232 VESQSEGLDLLDELGFKTNKERRMCQTIEEVIELIETLKTKRADFSYEIDGIVIKVDSLA 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG A+SPRW +++KF ++ T+LLDI++ +GRTG++TP A LEPV + G + Sbjct: 292 QQEELGFTAKSPRWAVAYKFPAEEVVTKLLDIELSVGRTGVITPTAILEPVKVAGTTVQR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED IK +DIR+ D+V+VK+AG++IP+VV +++++R + +PF Sbjct: 352 ASLHNEDLIK-----------EKDIRLFDQVIVKKAGDIIPEVVGVLIDQRTGEEKPFHM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 PTECPECHSELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ + + +D++ L + + + G+ SV NL SI + + SL Sbjct: 454 ITQLFQEQ----LVSRVSDLYRLTKEELI------QLERMGEKSVDNLLRSIEQSKENSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIR +G++ A++LA ++ Q L+ V +G+ +A Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMHFGDIDQLKQATK----------DQLLEVDEIGEKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPS-----IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A+V +++ + + L + + S K +V TG L+++ R+ Sbjct: 554 AVVTYFEKEEILNLLNELKELGVNMTYTGPKPVKVEESDSYFAGKTIVLTGKLEEMARND 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ + LG ++ +S+KTD++I G+ GSKL KA++L ++I +E + L L++ Sbjct: 614 AKTAIEALGGKLAGSVSKKTDLVIAGEAAGSKLTKAEELNIEIWDEAKMLEELKK 668 >gi|295397184|ref|ZP_06807287.1| NAD-dependent DNA ligase LigA [Aerococcus viridans ATCC 11563] gi|294974573|gb|EFG50297.1| NAD-dependent DNA ligase LigA [Aerococcus viridans ATCC 11563] Length = 670 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 236/717 (32%), Positives = 389/717 (54%), Gaps = 57/717 (7%) Query: 12 LSIEQAR----KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 ++ + + + +L + ++ + YY P I D+EYD L R + +P + Sbjct: 1 MTKDDQQSTDVARIEALTRLLNDYAYQYYALDNPTISDTEYDKLYRELQDLEAKYPTFIQ 60 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 +E P ++G ++ + KVTHS P +SL +N +++ KF+ + + + + Sbjct: 61 AE---SPTQRVGDVVSEAFTKVTHSQPMMSLGNAFNFDEVAKFVEDVKKNV----NGQVR 113 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 F E KIDG + I+YE G++V AA RGDG GED++ +R I ++P L +I IEV Sbjct: 114 FVCELKIDGLSVAIQYENGRYVRAATRGDGVVGEDITNNVRTIKSVPMKLRQDI--DIEV 171 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGE+Y+ K+ FLALN++ G +ANPRN+A+G +R+L+ +R LN F++ + Sbjct: 172 RGEIYMPKDAFLALNEKREEAGLPTFANPRNSAAGSIRQLDSKVTASRNLNIFLYSGVFS 231 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 E+ K Q ++ Q GF VN R TF I +Y EM + R L Y IDG+V KV Sbjct: 232 DELPIKSQQDLFQHFPDYGFRVNPLTRVCETFEEIQAYIEEMTAKRHELSYGIDGIVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+FS Q+ LG ++P+W I++KF ++ T + DI+ +GRTG++TP A +EPV + G+ Sbjct: 292 DDFSDQETLGYTVKAPKWAIAYKFQAEEVETTIHDIEWTVGRTGVVTPTAIMEPVLLDGS 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + A+LHN D I+ +DIR+ D V++ +AG++IP+VV +++++R D+ Sbjct: 352 TVQRASLHNMDLIE-----------AKDIRLNDTVVIHKAGDIIPEVVTVVLDKRPEDST 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ P+ CP+C S +V + A RC AC AQ E+L HFVSR+A NI G+ Sbjct: 401 PYPKPTTCPVCHSDLVHLEDE------VALRCVNP-ACPAQAKEKLYHFVSRNAMNITGV 453 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G L+ + + + PAD++ +++ Q + + GD + + +I + Sbjct: 454 GPSVLEQMYDKAN----VHSPADLYQVKKDQLMA------LDKIGDKASDKIIQAIEDSK 503 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 SLER +F LGIRHVGA+ AR +A+ Y S Q + L + +G+ Sbjct: 504 ENSLERLLFGLGIRHVGAKAARQIAEVYPSMQEIM----------TKERTDLTNIEGIGE 553 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS-----IGRHEKNVSSEIENKKLVFTGTLQKI 661 IA +IV F+ ++AL++ + + + S K +V TG L + Sbjct: 554 TIADSIVAFFATDGVRETIDALVENGVNMQYKGPVKAEVEAIDSFWSGKTVVLTGKLSQY 613 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A++ + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + +E+ + L Sbjct: 614 TRPEAKKAIEALGGNVTGSVSKKTDILVAGEDAGSKLAKAENLGVTVFSEQDMVDKL 670 >gi|134102614|ref|YP_001108275.1| NAD-dependent DNA ligase LigA [Saccharopolyspora erythraea NRRL 2338] gi|291004701|ref|ZP_06562674.1| NAD-dependent DNA ligase LigA [Saccharopolyspora erythraea NRRL 2338] gi|166216238|sp|A4FMS5|DNLJ_SACEN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|133915237|emb|CAM05350.1| DNA ligase, NAD-dependent [Saccharopolyspora erythraea NRRL 2338] Length = 727 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 215/709 (30%), Positives = 349/709 (49%), Gaps = 42/709 (5%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 R+ + L +++ H YY P I D E+D L + P L DP+ P Sbjct: 43 VRERYADLVEQVRAHQFRYYVLDSPTISDGEFDELFTELQTLESDHPAL---RDPDSPTQ 99 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +GG + V H LSL+ ++ ++LR ++ R+ R + E KIDG Sbjct: 100 VVGGTFSTDFTAVDHLERMLSLDNAFDPDELRAWVERVEREVGSSAH----YLCELKIDG 155 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRGEVY 192 I + Y GK A RGDG +GEDV+ +R + +P L+ P ++E+RGEV+ Sbjct: 156 LAINLLYRDGKLERALTRGDGRTGEDVTLNVRTMDDVPDQLTGTDEYPVPALVEIRGEVF 215 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 ++F LN ++ G+ P+ANPRN+A+G LR+ +P +R L HGLGK Sbjct: 216 FRVDEFAQLNASLVEAGKPPFANPRNSAAGSLRQKDPRVTKSRPLRMICHGLGKREGFEP 275 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 K Q E +R G V+ + +T ++ + + R++ ++IDG+V KVDE SL Sbjct: 276 KQQSESYAALRAWGLRVSPHTKVLSTVDEVLEHIDYWGKHRNSAEHEIDGVVVKVDEVSL 335 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I++K+ +QA+TRLLDI + +GRTG +TP A +EPV + G+ + A Sbjct: 336 QRRLGATSRAPRWSIAYKYPPEQATTRLLDIQVAVGRTGRVTPYAVMEPVKVAGSTVARA 395 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D ++ + + +GDRV++++AG+VIP+V+ +V+ R + F P Sbjct: 396 TLHNADQVR-----------HKGVLIGDRVVIRKAGDVIPEVLGPVVDVRDGSEREFVMP 444 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C + + + RC C Q+ ERL R AF+IE LG + + Sbjct: 445 TECPDCGTALAHQ-----KEGDVDLRCPNSHNCIGQRRERLFQLAGRKAFDIEVLGYEGV 499 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 A + D+F L TT G V+ L ++ + L Sbjct: 500 SALLS----AGVVFDEGDLFDLNEEALLKTTLFRTDDGSLSVNGGKLLANLESAKQQPLW 555 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R + +L IRHVG AR LA+ + S + L VG IA A Sbjct: 556 RVLVALSIRHVGPIAARVLAREFGSLDRIQEASE----------EELAAGEGVGPTIATA 605 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 + E++ + V + ++++ + +V TG+L+ R +A+E + Sbjct: 606 VREWFDVDWHREIVRKWSEAGVRMADERDESIERHLTGLSIVVTGSLEGFSRDEAKELIM 665 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G + +S+KT ++VG++PGSK +KA Q+ V +++E+ F LL+Q Sbjct: 666 ARGGRAAGSVSKKTAFVVVGESPGSKYDKAVQMKVPVLDEDGFRVLLEQ 714 >gi|118465270|ref|YP_883031.1| NAD-dependent DNA ligase LigA [Mycobacterium avium 104] gi|166215821|sp|A0QJE3|DNLJ_MYCA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|118166557|gb|ABK67454.1| DNA ligase, NAD-dependent [Mycobacterium avium 104] Length = 693 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 218/711 (30%), Positives = 344/711 (48%), Gaps = 43/711 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + R++ L + + H YY PII D+E+DAL A+ P+L + + P Sbjct: 12 EVRRQWQELAETVREHQFRYYIKDAPIISDAEFDALFNELLALEERHPELRVA---DSPT 68 Query: 76 NKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +GG + H LSL+ +++ ++L + R+ K + E KI Sbjct: 69 QLVGGAGFATDFAEAAHLERMLSLDDVFDTDELIAWSNRVENEIGKDPH----YLCELKI 124 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGE 190 DG +++ Y G+ AA RGDG GEDV+ R I +P L +P ++EVRGE Sbjct: 125 DGVALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLSPSDDFPVPALLEVRGE 184 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V+ DF ALN ++ G+ P+ANPRN+A+G LR+ NP R L HG+G+T Sbjct: 185 VFFLLADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARRKLRMICHGIGRTEGF 244 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 K Q+E + G PV + + R L ++IDG+V KVD+ Sbjct: 245 SPKTQHEAYTALSVWGLPVAEQTARVRGLAAVQERIGYWGEHRYELQHEIDGVVVKVDDV 304 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG +R+PRW +++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ + Sbjct: 305 ALQRRLGATSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVG 364 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN +K + + +GD V++++AG+VIP+V+ +V+ R + F Sbjct: 365 LATLHNAAEVKR-----------KGVLIGDTVMIRKAGDVIPEVLGPVVDLRDGTEREFV 413 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + + + A RC +C AQ ER+ H R A +IEGLG + Sbjct: 414 MPTTCPECGTPLA-----PAKEGDADIRCPNARSCPAQLRERVFHVAGRGALDIEGLGYE 468 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 K A I D+F L T G + T L ++ K + ++ Sbjct: 469 AATALLK----AGVIADEGDLFALTEDDLLRTELFRTKAGTLSANGTRLLQNLQKAKKVA 524 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R + +L IRHVG AR+LA + + L V VG IA Sbjct: 525 LWRVLVALSIRHVGPTAARALATEFGDLDSIMSA----------STERLAAVEGVGPTIA 574 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 A+ E++ + V+ + +V +E +V TG+L R A+E Sbjct: 575 AALTEWFTVDWHRAIVDKWRGAGVRMADERDASVPRTLEGLTVVVTGSLAGFSRDDAKEA 634 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G + +S+KTD ++ GD+PGSK +KA +LGV I++E+ F LL + Sbjct: 635 ILARGGKAAGSVSKKTDYVVAGDSPGSKYDKAVELGVPILDEDGFRKLLAE 685 >gi|148544657|ref|YP_001272027.1| DNA ligase, NAD-dependent [Lactobacillus reuteri DSM 20016] gi|184154010|ref|YP_001842351.1| NAD-dependent DNA ligase [Lactobacillus reuteri JCM 1112] gi|227363780|ref|ZP_03847887.1| DNA ligase, NAD-dependent [Lactobacillus reuteri MM2-3] gi|325682991|ref|ZP_08162507.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri MM4-1A] gi|209572830|sp|A5VLG6|DNLJ_LACRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781354|sp|B2G8T9|DNLJ_LACRJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148531691|gb|ABQ83690.1| DNA ligase, NAD-dependent [Lactobacillus reuteri DSM 20016] gi|183225354|dbj|BAG25871.1| NAD-dependent DNA ligase [Lactobacillus reuteri JCM 1112] gi|227071137|gb|EEI09453.1| DNA ligase, NAD-dependent [Lactobacillus reuteri MM2-3] gi|324977341|gb|EGC14292.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri MM4-1A] Length = 680 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 240/725 (33%), Positives = 384/725 (52%), Gaps = 50/725 (6%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M ++Q P++ L++++A+ E+ L +++ YY+ P + D YD +R + Sbjct: 1 MSEKQ-TPVKELTLQEAQDEIKPLRAKLTKWGKEYYEQDNPTVEDHVYDRAYQRLVQLEE 59 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP L + P ++GG L KV H IP LS+ +++IE+L F R + Sbjct: 60 QFPQLV---SADSPTQRVGGATESQLTKVRHEIPMLSMGDVFSIEELMDFNQRQQE--NR 114 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 + + LE KIDG +++ YE GK V + RG+G GEDV+A +R I ++P L Sbjct: 115 DVEVEPEYNLELKIDGLSLSLVYENGKLVQGSTRGNGTIGEDVTANVRTIKSVPAELPEP 174 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 + IEVRGE Y+ K F LN + A G +ANPRNAA+G LR+L+P R L+ F Sbjct: 175 LS--IEVRGECYMPKAAFAKLNAKREAEGLPVFANPRNAAAGSLRQLDPKVTAQRELDTF 232 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 ++ + + +I K Q E L +MR LGF VN R + I Y E + R L Y I Sbjct: 233 MYYVPEYQKIGVKTQAEALDRMRELGFNVNPNNRVVHNRDEIEKYIEEYTAQRDKLTYGI 292 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KV++ + LG + PRW I++KF ++ +T + DI +GRTG +TP A ++ Sbjct: 293 DGIVEKVNDLDTEVALGNTVKVPRWEIAYKFPPEEQATIVRDIVWTVGRTGNVTPTAVMD 352 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G ++ A+LHN DY++ +DIR+GD V + +AG++IP++ + + Sbjct: 353 PVQLAGTTVSRASLHNPDYLR-----------EKDIRIGDTVYLHKAGDIIPEISKVDLT 401 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R D+ + P+ CP+C S +V A RC + C AQ E L HF SR+ Sbjct: 402 KRPADSVEYEIPTKCPVCGSELVHLDGE------VALRCINPM-CPAQIKEGLAHFASRN 454 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A NI+GLG + ++ + E I A ++ L Q + + FG+ S NL Sbjct: 455 AMNIDGLGPRIIEQLWDKE----LIHDVAGLYRLNHDQLLT------LDKFGEKSTANLL 504 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 SI+ RN S+ER +F LGIRHVGA+ AR + +++ + + D + Sbjct: 505 TSIDNSRNNSVERLLFGLGIRHVGAKAARIIMEHFGDLDSLMKA----------DADEIS 554 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTG 656 + +G I ++IV ++ N + + ++ L + R N SE +++V TG Sbjct: 555 AISGIGPTIGESIVTYFANQQVVKLIDELREVGVNFAYLGSRSNANPDSEWNGRRVVLTG 614 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 L ++ R +A+ ++ GA V+ +S+KTDI+I G + GSKL KAQ LG+ + NE+QF Sbjct: 615 KLTEMTRGEAKSWLENHGAKVTESVSKKTDIVIAGADAGSKLTKAQNLGIDVWNEQQFSQ 674 Query: 717 LLQQY 721 +++ Sbjct: 675 AMKEE 679 >gi|332880187|ref|ZP_08447868.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681836|gb|EGJ54752.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 670 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 215/709 (30%), Positives = 351/709 (49%), Gaps = 48/709 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++++ L E+ H+ YY + P I D E+D + R + A P+ +DP+ P Sbjct: 4 EVKEQIERLRNELHRHNYNYYVLNAPEISDQEFDRMMRELQDLEAAHPEF---DDPDSPT 60 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G ++N +V H P LSL +N +++ F R+ + E K D Sbjct: 61 RRVGSDLNQEFVQVPHRYPMLSLSNTYNKQEVADFYERVRSGL---EGEPFEICCEMKYD 117 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYIS 194 G I++ YE+G+ V A RGDG G+DV+ ++ I IP L+ N PE E+RGE+ + Sbjct: 118 GLSISLTYEQGRLVRAVTRGDGVQGDDVTENVKTIRCIPLRLNGNGYPEEFEIRGEILMP 177 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 F LN E +ANPRNAASG L+ N + + I G Sbjct: 178 WTSFETLNREREEREEPLFANPRNAASGTLKSKNSAVVAQRKLDAYLYYLLGEHIPFDGH 237 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 YE LQ R GF ++ G+++ T I + + R LP DG+V KV+ Q+ Sbjct: 238 YENLQAARSWGFKISGGMKKVTTLQDIYDFIDYWDVERKNLPVATDGIVLKVNSQRQQRA 297 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW I++KF ++A TRL + Q+GRTG +TPVA ++PV + G ++ ATLH Sbjct: 298 LGYTAKSPRWAIAYKFQAERARTRLNAVTFQVGRTGTVTPVANMDPVQLAGTVVRRATLH 357 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA-QPFSFPSF 433 N D ++ L D+ +GD V V++ GE+IPK+V + + R P+ F + Sbjct: 358 NADVMEQL-----------DLHIGDMVYVEKGGEIIPKIVGVDADARGPETGPRAEFITR 406 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C + +VR AA C AC Q R++H++SR A NI+ LG + +D Sbjct: 407 CPECGAELVRYEGE------AAWYCPNDTACPPQIKGRIEHYISRRAMNIDSLGPETVDD 460 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 +++ IR AD++ +Q +Q G + S + SI + ER Sbjct: 461 YYRR----GLIRDVADLYDIQVQQING------EDGTREKSAQKIVRSIADSVEVPFERV 510 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F+LGIR VG A++LA+++ S A ++++ +G +IA++++ Sbjct: 511 VFALGIRFVGEIAAKALARHFKSMDALASA----------SLEDMLQINGIGVVIAESVI 560 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVT 671 ++ N N V L ++ E+ S ++ + +V +G R + + + Sbjct: 561 RYFANEANRDLVRRLREKGVRMELSDEELSSHSDKLSGQSIVVSGVFSLHSRDEYKAMIE 620 Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 Q G +S KT ++ G N G +KLEKA +LG+ I++EE+FL ++ Sbjct: 621 QHGGKNVGSISSKTSFVLAGANMGPAKLEKAGKLGIPILSEEEFLKKIE 669 >gi|294793797|ref|ZP_06758934.1| DNA ligase, NAD-dependent [Veillonella sp. 3_1_44] gi|294455367|gb|EFG23739.1| DNA ligase, NAD-dependent [Veillonella sp. 3_1_44] Length = 667 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 233/704 (33%), Positives = 369/704 (52%), Gaps = 46/704 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L+QE+++ YY P + D EYD R + A P+ S + P + Sbjct: 4 KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIVS---SSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++ S KV H P LSL +++ +++R F +R+ + + +E KIDG Sbjct: 61 VGMKVEGSFEKVVHGRPMLSLSNVFSADEVRAFASRVEKELG---HKPSAYVVELKIDGL 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G FV A RGDG GEDV+A +R I +IP L N PE IEVRGE Y+ ++ Sbjct: 118 AVNLHYENGMFVRAVTRGDGRIGEDVTANVRTIKSIPLYL-ENAPEFIEVRGEAYMPHSE 176 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N+E G + NPRNAA+G LR+ +P +R L FF + +G Q E Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSEVGANIHSQEE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +LQ + F VN R T ++ N R LPYD DG+V KV+ F Q+ LG Sbjct: 237 LLQSLETFKFSVNPHYRVCKTIDEVIDAINYWGEKRHELPYDTDGMVIKVNSFDDQEVLG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ P+W ++K+ ++ T L DI I +GRTG+LTP LE V + G ++ TLHN+ Sbjct: 297 STAKDPKWATAYKYPPEEVETVLKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQ 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+I +DIR+GD V++ +A E+IP+V+ ++ +R+ PF+ P+ CP+ Sbjct: 357 DFI-----------NEKDIRIGDHVIIHKAAEIIPEVIRVVPEKRNGSEIPFTIPNTCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C+S VR AA RCT C A + E++ HFVSRDA NI+GLG ++ Sbjct: 406 CESPAVRREGE------AAVRCTNK-HCPAIEKEQIIHFVSRDAMNIDGLGPSIVENLIN 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 ++ I D++ L Q + G S NL +I + L+R ++ Sbjct: 459 NK----LITNVVDLYHLTVDQLVTM------DRMGKKSAENLVKAIADSKTRGLDRVLYG 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR +G++ A ++A S + F L+ V +G +A +IVE+ Sbjct: 509 LGIRLIGSKAAGTIANVVKSMERFMTITK----------EELVAVEEIGPTMADSIVEYR 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 Q+P ++ +E L + +++E + +V TG L+ + R +A + + GA Sbjct: 559 QDPAHVEIIEGLTAAGLKMTVDVVEAAGNQMEGEIVVLTGKLEVMGRSEAGKILEAHGAK 618 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 V+ +S+KT ++I G++ GSKL KA +LG+++MNEE+F+ LL++ Sbjct: 619 VTGSVSKKTTLVIAGEDSGSKLTKANELGIRVMNEEEFVELLRE 662 >gi|198283038|ref|YP_002219359.1| NAD-dependent DNA ligase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666742|ref|YP_002425245.1| DNA ligase, NAD-dependent [Acidithiobacillus ferrooxidans ATCC 23270] gi|254781244|sp|B7J653|DNLJ_ACIF2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781245|sp|B5EP61|DNLJ_ACIF5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|198247559|gb|ACH83152.1| DNA ligase, NAD-dependent [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518955|gb|ACK79541.1| DNA ligase, NAD-dependent [Acidithiobacillus ferrooxidans ATCC 23270] Length = 671 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 243/706 (34%), Positives = 375/706 (53%), Gaps = 46/706 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L E+ ++ YY+ P + D+EYDA R + P + + P ++ Sbjct: 10 ERIQQLRAELVAANNAYYREDSPTLSDAEYDARLRELRTLEDRNPQW---QSADSPTQRV 66 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G +V ++IP SL+ +++ + ++ R+ + ++D + + EPK DG Sbjct: 67 GAAPVEVFGEVHYAIPLTSLDNVFDQDGFSDWLARVQKGLGRED---VPLSAEPKFDGLS 123 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKND 197 + IRY +GK V A RGDG +GEDV+A +R I +P L+ + PE++EVRGEV I Sbjct: 124 VNIRYIEGKLVQAGTRGDGQTGEDVTANVRTIRNVPLQLTGKDWPELLEVRGEVVIPVAA 183 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN E + G P+ANPRNAA+G LR+L+ + R L +F G G++S K Sbjct: 184 FRRLNGERLRAGDNPFANPRNAAAGSLRQLDSSVTAKRPLAYFPWGWGESSVPLGKSHIA 243 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +++++ GF V + +R + Y++EM+ IR +P++IDGLV+KVD+ ++QLG Sbjct: 244 VMERLSAWGFEVTSYLRGVHELTECQRYFSEMQKIREGMPFEIDGLVFKVDDLLAREQLG 303 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 AR+PRW I++KF + T + DI +GRTG++TPVA L+PV +GG ++ A+LHN+ Sbjct: 304 FTARAPRWAIAYKFPAHEERTVVEDILASVGRTGVITPVAVLKPVQVGGVTVSRASLHNQ 363 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D + +DIRVGD VLV+RAG+VIP+VV +I ER P QP+ P CP+ Sbjct: 364 DEVDR-----------KDIRVGDTVLVRRAGDVIPEVVMVIKEERPPATQPWHMPQRCPV 412 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S V+R N +AHRC GGL C AQ++ ++HF SR A +I GLG++ ++ Sbjct: 413 CGSEVLRLANE------SAHRCMGGLYCPAQRMGAIRHFASRRAMDIRGLGEKLVEQLVG 466 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + ADI+ L + S L I++ R+ SL RF+++ Sbjct: 467 H----GLVHTVADIYHLDEAALCG------LERMASRSAQKLLAEIDRSRHTSLPRFLYA 516 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG A+SLA Y+ + L +P VG I+A+++ F+ Sbjct: 517 LGIRQVGEGTAKSLAIYFGDLDPLMAATPEL----------LQNIPDVGPIVAESVAHFF 566 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 P N + AL + + LV TG L + R +A+ + G Sbjct: 567 AQPHNRDVIAALRAAGVQWAVVQPQK-GGRFQGMTLVLTGALDNMTREEAKTAIENAGGK 625 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 VS +S KT ++VG +PGSK EKA +LGVK + E QFL + + Sbjct: 626 VSGSVSAKTSYVVVGKDPGSKAEKAAKLGVKQLTEAQFLAMFSEKE 671 >gi|134034096|sp|Q4UN15|DNLJ_RICFE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 689 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 269/695 (38%), Positives = 406/695 (58%), Gaps = 29/695 (4%) Query: 26 QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS 85 +I+ ++ YY P++ DSEYD L + FP L N P KIG ++ Sbjct: 21 DKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLVLE---NSPSKKIGAKITNK 77 Query: 86 LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEK 145 K+TH IP LSL ++ +D+R F+ RI F + + I EPKIDG + Y+ Sbjct: 78 FAKITHQIPMLSLSNAFDEQDVRDFVDRIKNFLRLDEFAPI--FCEPKIDGLSFSAIYKN 135 Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205 G A RGDG+ GED++A I+ I P N PE +EVRGE+YI K DFL LN E Sbjct: 136 GLLTTGATRGDGYVGEDITANIKTIKNFPH-KIDNAPEFLEVRGEIYIEKQDFLNLNKEQ 194 Query: 206 IAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264 GR +ANPRNAA+G LR+L+ + R L +FV+ G T + A Q ++L K++ Sbjct: 195 EEQGRDKFANPRNAAAGSLRQLDASITAQRSLKYFVYSGGVTEQNLASSQEQLLIKLKEF 254 Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 GF VN + N+ I ++Y +K+ R LPY+IDG+VYK+++F+LQ ++G ARSPR+ Sbjct: 255 GFSVNEISKLTNSEEEIFTFYEYLKTNRENLPYEIDGVVYKLNDFALQNRMGFIARSPRF 314 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384 +HKF T+LL I +Q+GRTG LTPVA LEP+ IGG ++ ATLHN I Sbjct: 315 ATAHKFPAIIGRTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSRATLHNFQEIMR--- 371 Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444 +D+R+ D V ++RAG+VIPK+ + + +R D F P FCP C S++ Sbjct: 372 --------KDVRIDDYVFLQRAGDVIPKITGVDIGKRPNDTIAFDTPLFCPSCNSKLHY- 422 Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504 RC GL C AQ ER++HFVS++A +IEGLG++Q++F I Sbjct: 423 -----APEDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQVEFLIDK----GLI 473 Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564 P DIF L+ + +S TK+EN+ G+G SV NL+ +I + +N+SL RFI++LGIRH+G Sbjct: 474 SNPLDIFFLKEKNDSSLTKLENMDGWGKKSVENLFKNIEQSKNVSLPRFIYALGIRHIGE 533 Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 + A+ LA+ + SY NF ++ + ++ D + L + +GD I I++F+ N Sbjct: 534 QNAKLLAREFGSYANFIAQMELLSKNDLDIYQKLNDLEGIGDKILVDIIDFFDVKENTTL 593 Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684 ++ L + ++ + + SS + K +VFTG+L I R +A+ +LGA V+A +S Sbjct: 594 IKKLGEVLNIEDYKETREQSS-LTGKIIVFTGSLPTISRAEAKATAEKLGAKVAASVSSN 652 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 TD+++ G + GSKL+KA++L +KI+ EE++L L++ Sbjct: 653 TDLVVAGVDAGSKLKKAKELNIKIIGEEEWLTLIK 687 >gi|270290149|ref|ZP_06196375.1| DNA ligase, NAD-dependent [Pediococcus acidilactici 7_4] gi|270281686|gb|EFA27518.1| DNA ligase, NAD-dependent [Pediococcus acidilactici 7_4] Length = 675 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 229/717 (31%), Positives = 379/717 (52%), Gaps = 51/717 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 PIE +++ +A + L +++ + YY P + D YD A+ AFP++A Sbjct: 6 PIEKMNLTEANELAEQLREKLDRWSELYYTKDAPEVEDYVYDENYADLQALEQAFPEIA- 64 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ ++GGE+ KVTH+ P LS+ +++ E+L +F RI + + + Sbjct: 65 --SPDSITQRVGGEVLAGFTKVTHTEPMLSMGDVFSKEELAEFDQRIQKNVG----HPVD 118 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + +E KIDG I++ YE GK V + RGDG+ GED++ ++ I ++P +L+ P +EV Sbjct: 119 YNVELKIDGLAISLVYEDGKLVQGSTRGDGNIGEDITKNLKTIKSVP--QTLSRPLSLEV 176 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGE Y+ K F LN++ A G+ +ANPRNAA+G LR+LN R L+ F++ L + Sbjct: 177 RGECYMPKAAFAKLNEQQSAAGKSVFANPRNAAAGSLRQLNTQITKARELDTFIYTLVEP 236 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + + Q+E +Q M LGF N ++ + Y + R LPY IDG+V KV Sbjct: 237 EVLGVQTQHEAIQAMAELGFNTNPTQTVCHSLDEVWDYIERYEGQRDDLPYGIDGIVLKV 296 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ LQ +LG + PRW I++KF ++ +T + DI+ +GRTG++TP A ++PV + G Sbjct: 297 NDLGLQAELGHTVKVPRWEIAYKFPPEEEATVVRDIEWSVGRTGVVTPTAVMDPVQLAGT 356 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ ATL+N D + +D+R+GD VL+ +AG++IP++ +++++R D Sbjct: 357 TVSRATLNNVDQL-----------TAKDVRIGDTVLLHKAGDIIPEITRVVLDKRPADVA 405 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + P+ CP C +V A RC C AQ + RL+HF SR+A NI GL Sbjct: 406 DLTIPNQCPSCGKELVHLNGE------VALRCINP-DCPAQIVARLEHFGSRNAMNIMGL 458 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q+ + I D++ L Q + + GF + V NL ++I++ R Sbjct: 459 GPKQIQQLYAK----GFIHHFDDLYKLTADQLS------QLDGFKEKRVNNLLEAIDRSR 508 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 SLER + LGI+ VG ++AR+LA+ + S + V VG+ Sbjct: 509 QNSLERLVNGLGIQGVGTKMARTLAEAFGSMDRLMEA----------SVEEFDAVDTVGE 558 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQR 663 +A + F+Q+ ++ L + + + KK+V TG L+ R Sbjct: 559 TLANNLATFFQSEAARNMIDELKAVDVNMEYLGAQPSEAPENYFNGKKVVLTGKLEHFTR 618 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ +E + LGA V+ +S+KTD++I G + GSKL KAQ LGV++++E L L+Q Sbjct: 619 NELKEKLLNLGADVAGSVSKKTDVLIAGADAGSKLTKAQDLGVEVIDEATALEKLEQ 675 >gi|189461356|ref|ZP_03010141.1| hypothetical protein BACCOP_02011 [Bacteroides coprocola DSM 17136] gi|189431885|gb|EDV00870.1| hypothetical protein BACCOP_02011 [Bacteroides coprocola DSM 17136] Length = 667 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 227/707 (32%), Positives = 358/707 (50%), Gaps = 48/707 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L +E+ H+ YY + P+I D E+D L R + P+ DPN P ++ Sbjct: 5 ERIDQLREELHVHNYNYYVLNAPVISDLEFDKLMRELQDLEALHPEY---YDPNSPSVRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G ++N + +V H P LSL ++ ++ +F R+ + + E K DGT Sbjct: 62 GSDLNKNFTQVEHKYPMLSLGNTYSQAEVTEFYERVSKSL----NEEFELCCEMKYDGTS 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKND 197 I++ YE GK V A RGDG G+DV+ ++ I +IP VL P+ E+RGE+ + N Sbjct: 118 ISLTYEDGKLVRAVTRGDGVRGDDVTDNVKTIRSIPLVLHGEGYPKNFEIRGEILMPWNV 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F LN E +ANPRNAASG L+ N + + G YE Sbjct: 178 FEELNRERELREEPLFANPRNAASGTLKSQNSAVVANRKLDAYLYYLLGDNLPHDGHYEN 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 LQ+ GF +++ R+A T + + N R LP DG+V KV+ Q+ LG Sbjct: 238 LQEAAKWGFKISHISRKARTLQEVFDFINYWDVERKNLPVATDGIVLKVNSLRQQRNLGY 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+SPRW I++KF ++A T+L + Q+GRTG +TPVA L+PV + G ++ A+LHN D Sbjct: 298 TAKSPRWAIAYKFQAERALTKLEKVTYQVGRTGAVTPVANLDPVQLSGTVVRRASLHNAD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I L D+ +GD V V++ GE+IPK+ + V+ R ++ +F + CP C Sbjct: 358 IIASL-----------DLHIGDMVYVEKGGEIIPKITGVEVSARPAGSEKVTFITHCPEC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +VR + AA+ CT AC Q +++HF+SR A NIEGLG + +D F++ Sbjct: 407 GSELVRYEDE------AAYYCTNETACPPQIKGKIEHFISRRAMNIEGLGPETVDLFYQE 460 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I AD++TLQ + G+ S N+ I + + + ER +F+L Sbjct: 461 ----GLIHDIADLYTLQTADIC------RLERMGEKSAENIIQGIERSKEVPYERVLFAL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR VG +A+ +AK + S + A + LI V +G+ IA +I++++ Sbjct: 511 GIRFVGETVAKKVAKAFRSIEALASA----------NLDDLIHVDEIGEKIAGSIIQYFA 560 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 N +N VE L + E S +++ +V +G + R + + + + G Sbjct: 561 NEKNRILVERLRQSGLKLEADEEDLSGYSDKLKGMSIVISGVFARHSRDEYKALIEKHGG 620 Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQY 721 +S+KT I+ GDN G SKLEKAQQL + I +E +FL ++++ Sbjct: 621 KNVGSISKKTSFILAGDNMGPSKLEKAQQLNIPIKDENEFLAMIEEE 667 >gi|296119554|ref|ZP_06838112.1| DNA ligase, NAD-dependent [Corynebacterium ammoniagenes DSM 20306] gi|295967437|gb|EFG80704.1| DNA ligase, NAD-dependent [Corynebacterium ammoniagenes DSM 20306] Length = 700 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 212/717 (29%), Positives = 351/717 (48%), Gaps = 50/717 (6%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 + L+ E+A+K + L QE+ H + YY +P I D+++DAL + A+ A P L Sbjct: 8 DQLNPEEAQKRWAELAQEVRRHRELYYNE-QPAIPDADFDALFQELVALESAHPQLVV-- 64 Query: 70 DPNGPLNKIGGEM--NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++G + + + H +SL+ ++N ++L+ ++ R + Sbjct: 65 -PDSPTQEVGSAPAADSAFADIEHLERLMSLDNVFNADELQDWLDRT---------PAEA 114 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPE 183 + E KIDG I + Y GK AA RGDG GED++A R I +IP L +P Sbjct: 115 YLAELKIDGASIDLVYRDGKLATAATRGDGRVGEDITANARVIESIPHELQGSEEYPVPA 174 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHG 242 ++E+RGE+Y+ DF ALN+E + G++ +ANPRN+A+G LR NP D R L HG Sbjct: 175 LVEIRGEIYMRPEDFEALNEERASEGKQAFANPRNSAAGGLRMKNPDDVKKRRLRLVAHG 234 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 LG Q++ + G PV+ + T + R +++DG+ Sbjct: 235 LGAREGFTPTSQHDAYAAIAAWGLPVSPYTERVTTSKEVQDKVKYWADHRHDAEFEMDGV 294 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KVD+ Q+ LG +R+PRW I++K+ ++ +T+L +I++ +GRTG +TP A ++PV Sbjct: 295 VIKVDDLGSQRSLGATSRAPRWAIAYKYPPEEVTTKLRNIEVGVGRTGRVTPYAVMDPVF 354 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G+ ++ ATLHN+ +K + + +GD V++++AGE+IP+V+ + +R Sbjct: 355 VSGSTVSMATLHNQSEVKR-----------KGVLIGDTVIIRKAGEIIPEVLGPVEEKRD 403 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 + FP CP C +++ + A RC C AQ RL++ R AF+ Sbjct: 404 GTETEWVFPENCPSCGTKLA-----PQKEGDADWRCPNTRTCPAQLSARLEYLAGRGAFD 458 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IE LG++ + + +D+F L + G + S L ++ Sbjct: 459 IEALGEKGAIDLIER----GVLEDESDLFDLTEELLKKSEVYTTKAGNVNASGKKLLSNL 514 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 R+ L R + +L IRHVG AR++A Y S A + D + Sbjct: 515 ETARHTDLWRVLVALSIRHVGPTAARAIASRYGSLD----------AARSADVEDIAETD 564 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 VG +IA++ ++++ + V+ +E +V TGTL+ Sbjct: 565 GVGLVIAESFKDWFEIDWHRTIVDKWAAAGVTMAIDASDKPEQTLEGLTIVVTGTLENFS 624 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R A+E + G S +S+KTD ++ G+N GSK KA+ LGV I+NE F LL Sbjct: 625 RDSAKEAIISRGGKASGSVSKKTDFVVAGENAGSKETKARDLGVTILNENGFETLLA 681 >gi|312898543|ref|ZP_07757933.1| DNA ligase, NAD-dependent [Megasphaera micronuciformis F0359] gi|310620462|gb|EFQ04032.1| DNA ligase, NAD-dependent [Megasphaera micronuciformis F0359] Length = 672 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 239/713 (33%), Positives = 370/713 (51%), Gaps = 46/713 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + ++A L L +++ ++ YY KP I D +YD L R + I A P+ + Sbjct: 1 MEQDKAYARLLELREKLDFYSYQYYTLDKPTITDYDYDMLYRELETIEGAHPEWVTA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G +++ K TH P LSL ++N +LR+F R+ ++ + +E Sbjct: 58 DSPTQRVGHKISGGFNKYTHDRPMLSLGDVFNDNELREFDRRVRSDLGEQVPQ---YVVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I + YE G FV RGDG GEDV+ +R I TIP + IE+RGEV Sbjct: 115 LKIDGLAINLIYENGMFVRGVTRGDGVVGEDVTNNVRTIKTIPL-KIDSHSPHIEIRGEV 173 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+ F ALN + +P+ANPRNAA+G LR+L+P R L+FF + +G T + Sbjct: 174 YMPVRAFDALNIQRSEDELEPFANPRNAAAGSLRQLDPQITAQRNLSFFAYAIGGTVGMT 233 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q E+L+ ++ L F VN R ++ ++++ + R LPY DG+V KV+ F+ Sbjct: 234 IHSQEELLEDLKKLRFHVNKEYRVFDSIEDVITFIHSWDERRDELPYATDGMVIKVNSFA 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+ LG + PRW I++KF ++A T++ I + +GRTG+LTP A L PV + G + Sbjct: 294 QQELLGNTVKIPRWAIAYKFPPERAKTKVEGISVTVGRTGVLTPAADLTPVRLAGTTVKR 353 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNEDYIK +DIR+GD V++++AGE+IP+VV +V ER F Sbjct: 354 ATLHNEDYIK-----------EKDIRIGDTVIIQKAGEIIPEVVGPVVKERTGQENVFVM 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C VVR AA RC C A +++ HFVSR+A NI+GLG Sbjct: 403 PTHCPGCGHEVVRPDGE------AATRCVNP-ECPAILSQKVAHFVSRNAMNIDGLGDAI 455 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + I +DI+ L++ S + GF D S NL ++ + + L Sbjct: 456 TAQLLQQ----GLIHRVSDIYDLKKEDLIS------LEGFADKSADNLLKAVEDSKKVGL 505 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R +F+LGIR VGA+ AR LA+++ S + A L + +G IA+ Sbjct: 506 ARVLFALGIRFVGAKAARILAEHFGSVEALAAA----------STEELTDIDEIGPRIAE 555 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ + + V AL + + S + +V TG L+ + R +A+E V Sbjct: 556 SVHTWIRTDEARKLVAALEAAGVDMTAQKRQTKGSAFRGEIVVLTGKLETMTRKEAEEAV 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 G + ++ KT +++ G +PGSK EKA+ LG I++EE+F+ +Q+ T Sbjct: 616 VAGGGKCTGSVTGKTTLVVAGADPGSKYEKARSLGTPIISEEEFIAWIQRDKT 668 >gi|304385588|ref|ZP_07367932.1| NAD-dependent DNA ligase LigA [Pediococcus acidilactici DSM 20284] gi|304328092|gb|EFL95314.1| NAD-dependent DNA ligase LigA [Pediococcus acidilactici DSM 20284] Length = 675 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 229/717 (31%), Positives = 378/717 (52%), Gaps = 51/717 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 PIE +++ +A + L +++ + YY P + D YD A+ AFP++A Sbjct: 6 PIEKMNLTEANELAEQLREKLDRWSELYYTKDAPEVEDYVYDENYADLQALEQAFPEIA- 64 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ ++GGE+ KVTH+ P LS+ +++ E+L +F RI + + + Sbjct: 65 --SPDSITQRVGGEVLAGFTKVTHTEPMLSMGDVFSKEELAEFDQRIQKNVG----HPVD 118 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + +E KIDG I++ YE GK V + RGDG+ GED++ ++ I ++P +L+ P +EV Sbjct: 119 YNVELKIDGLAISLVYEDGKLVQGSTRGDGNIGEDITKNLKTIKSVP--QTLSRPLSLEV 176 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGE Y+ K F LN++ A G+ +ANPRNAA+G LR+LN R L+ F++ L + Sbjct: 177 RGECYMPKAAFAKLNEQQSAAGKSVFANPRNAAAGSLRQLNTQITKARELDTFIYTLVEP 236 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + + Q+E +Q M LGF N ++ + Y + R LPY IDG+V KV Sbjct: 237 EVLGVQTQHEAIQAMAELGFNTNPTQTVCHSLEEVWDYIERYEGQRDDLPYGIDGIVLKV 296 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ LQ +LG + PRW I++KF ++ +T + DI+ +GRTG++TP A ++PV + G Sbjct: 297 NDLGLQAELGHTVKVPRWEIAYKFPPEEEATVVRDIEWSVGRTGVVTPTAVMDPVQLAGT 356 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ ATL+N D + +D+R+GD VL+ +AG++IP++ +++++R D Sbjct: 357 TVSRATLNNVDQL-----------TAKDVRIGDTVLLHKAGDIIPEITRVVLDKRPADVA 405 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + P+ CP C +V A RC C AQ + RL+HF SR+A NI GL Sbjct: 406 DLTIPNQCPSCGKELVHLNGE------VALRCINP-DCPAQIVARLEHFGSRNAMNIMGL 458 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q+ + I D++ L Q + + GF + V NL ++I+ R Sbjct: 459 GPKQIQQLYAK----GFIHHFDDLYKLTADQLS------QLDGFKEKRVNNLLEAIDSSR 508 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 SLER + LGI+ VG ++AR+LA+ + S + V VG+ Sbjct: 509 QNSLERLVNGLGIQGVGTKMARTLAEAFGSMDRLMEA----------SVEEFDAVDTVGE 558 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQR 663 +A + F+Q+ ++ L + + + KK+V TG L+ R Sbjct: 559 TLANNLATFFQSEAARNMIDELKAVDVNMEYLGAQPSEAPENYFNGKKVVLTGKLEHFTR 618 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ +E + LGA V+ +S+KTD++I G + GSKL KAQ LGV++++E L L+Q Sbjct: 619 NELKEKLLNLGADVAGSVSKKTDVLIAGADAGSKLTKAQDLGVEVIDEATALEKLEQ 675 >gi|222110866|ref|YP_002553130.1| NAD-dependent DNA ligase [Acidovorax ebreus TPSY] gi|254781316|sp|B9MIW4|DNLJ_DIAST RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|221730310|gb|ACM33130.1| DNA ligase, NAD-dependent [Acidovorax ebreus TPSY] Length = 740 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 248/743 (33%), Positives = 381/743 (51%), Gaps = 81/743 (10%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++ +L ++++ YY P + D+EYD + A+ A+PDL P+ P Sbjct: 28 VAAKIKALREQLNRWAHEYYVQDTPSVPDAEYDRAFQELQALEGAYPDLV---TPDSPTQ 84 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKDD-NSIFFTLEPK 133 ++ G + L V H +P LS+ + E + F R+ R + D + + EPK Sbjct: 85 RVLGAVLDGLTPVRHRVPMLSIRTETDTEASGAQAFDARVRRELKLPPDAPPVEYVAEPK 144 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 DG +++RYE G+ V AA RGDG GEDV+ +R I IP L +P ++EVRGEVY+ Sbjct: 145 FDGLAMSLRYEGGRLVQAATRGDGEVGEDVTHNVRTIRQIPLSLPAGVPRVLEVRGEVYM 204 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE---- 248 + DF ALN+ G K + NPRNAA+G +R+L+ R L+FF +GLG+ + Sbjct: 205 RRADFDALNERQREKGDKTFVNPRNAAAGAVRQLDSGITAQRPLSFFAYGLGEVTPAAEG 264 Query: 249 -IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + MLQ+++ GFPV V+ A +++++ + + R LPYDIDG+VYKV+ Sbjct: 265 GPDFGTHFGMLQQLKEWGFPVAAQVQIAQGASELIAFHQRVGAERDALPYDIDGVVYKVN 324 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +LQ+QLG R PRW ++HK+ ++ TR+ ID+Q+GRTG LTPVARL PV +GG Sbjct: 325 SLALQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDVQVGRTGKLTPVARLAPVFVGGVT 384 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV------------- 414 +TNATLHN ++ + +RVGD+V+V+RAG+VIP+VV Sbjct: 385 VTNATLHNLFELRR-----------KKVRVGDQVIVRRAGDVIPEVVGVVPAGAGLAVLA 433 Query: 415 ------------------DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456 + R P F P CPIC S VVR+ H Sbjct: 434 GSDALVDAASSADGTAPAQPLAGPRQPYVPNFRMPRQCPICGSAVVREPGE------VNH 487 Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516 RC+GGL C AQ+ + + HF R A +IEGLG++ +D + IR D++ L Sbjct: 488 RCSGGLFCPAQRKQAVLHFAQRRAMDIEGLGEKLVDQLVE----GHVIRTLPDLYRL--- 540 Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576 + + + + S N+ D+++K + +L RF+F LGIRHVG A+ LA+++ Sbjct: 541 ---GLSSLAQLDRMAEKSAQNVLDALDKSKRTTLARFLFGLGIRHVGEATAKDLARHFGR 597 Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636 L++V VG ++A+AI F+ P N VE L Sbjct: 598 LDAIMDA----------GVEQLLQVNDVGPVVAEAIHTFFAQPHNREVVEQLRACGVTWD 647 Query: 637 G-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695 + + +V TGTL + R A++ + GA V+ +S+KT ++ G + G Sbjct: 648 ESEPAAAATLPLAGMTVVLTGTLPTLGRDAAKDLLESAGAKVAGSVSKKTHYVVAGADAG 707 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SKL KAQ+LG+ +++E+ LL Sbjct: 708 SKLAKAQELGIPVLDEDGLRALL 730 >gi|188585101|ref|YP_001916646.1| DNA ligase, NAD-dependent [Natranaerobius thermophilus JW/NM-WN-LF] gi|254781378|sp|B2A5W5|DNLJ_NATTJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|179349788|gb|ACB84058.1| DNA ligase, NAD-dependent [Natranaerobius thermophilus JW/NM-WN-LF] Length = 663 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 246/710 (34%), Positives = 386/710 (54%), Gaps = 50/710 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + +K++ +L ++I YH+ YY P I D E+DAL + +P+ + P Sbjct: 1 MSKD-IQKKVEALREKIEYHNHRYYVLDAPEISDQEFDALMNELIELEQTYPEY---QSP 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GGE +V+H IP LSLE + + L F R+ + QK D + E Sbjct: 57 DSPSQRVGGEPLDKFPRVSHEIPMLSLENAESQKGLLDFHQRVSKNTQKTDPV---YVAE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE+G V A RGDG +GED++ ++ + +IP L L+ P IE+RGE Sbjct: 114 LKIDGLALSLRYEQGILVRGATRGDGTTGEDITPNVKTVRSIP--LKLSKPLDIEIRGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 ++SK F LN E G P+ANPRNAA+G LR+L+P R L+FF + + Sbjct: 172 FMSKASFERLNQEKAERGEDPFANPRNAAAGSLRQLDPKIPAKRDLDFFPYSVPYIRGEN 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y +++++ LGF +N +R+ T ++SY E + R+ LPY+IDG+V K+++++ Sbjct: 232 LDSHYSAVKELKDLGFKINPYIRKFETMEEVISYCEEWQEKRTKLPYEIDGVVIKLNDYN 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG +++PRW I++KF +QA +++ +I I +GRTG LTPV LEPV I G+ + Sbjct: 292 LQQQLGATSKNPRWAIAYKFPAEQAESQVNNIFINVGRTGALTPVVELEPVRIAGSTVKR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED ++ +D+R+GDRV++++AG++IP+VV + R QPF + Sbjct: 352 ASLHNEDILR-----------QKDVRIGDRVIIQKAGDIIPEVVKVKEEARTGHEQPFVY 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C+S R + A RC C AQ ER+ HF SRDA +IEGLG++ Sbjct: 401 PESCPVCKSEAKRINDE------AILRCINP-GCPAQAKERIIHFSSRDAMDIEGLGEKV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + I+ ADI+ L + ++ N+ GFGD S NL +I + + Sbjct: 454 VEKLYSH----GLIKDVADIYYLAK------NELSNLEGFGDKSAENLLQAIEESKKNPF 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + ++ LGIR VG A+ LA + N + L ++ +G +A Sbjct: 504 NKLLYGLGIRLVGKRAAQLLAFEFEHLDNLMKA----------QIEDLTKINDIGPRMAT 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQE 668 +IV F+Q + L K E+N SS + K +V TGT R + + Sbjct: 554 SIVSFFQLEHTHNLIRKLKKAGVNMKEPTEQNKSSDPSLTGKLVVITGTFDNYTRRELTD 613 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + GA V++ +S TD ++VG NPGSK +KAQ LG+ I+ E L Sbjct: 614 LIEAKGAKVTSNVSSNTDFVLVGANPGSKRDKAQDLGLTIIEESDLEDFL 663 >gi|239618216|ref|YP_002941538.1| DNA ligase, NAD-dependent [Kosmotoga olearia TBF 19.5.1] gi|239507047|gb|ACR80534.1| DNA ligase, NAD-dependent [Kosmotoga olearia TBF 19.5.1] Length = 672 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 249/710 (35%), Positives = 380/710 (53%), Gaps = 47/710 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + L +E++YH YY + PII D EYD + + + +P+L P+ P Sbjct: 6 DVIERAKKLREELNYHAYRYYVLNDPIITDEEYDRMLKELQELEKKYPELI---TPDSPT 62 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +IG + +V HS SL+ ++ E+L+ F RI + + + + E KID Sbjct: 63 QRIGAKPLNGFEQVIHSSRLYSLDNTYSEEELKGFDRRIKKLLNVE---QLDYVCELKID 119 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +T+RYE+G V A RGDG GE+V+ IR I +IP L L P IE+RGEVY+ K Sbjct: 120 GLSVTLRYEEGILVLGATRGDGTVGENVTKNIRTIKSIP--LRLRKPLTIEIRGEVYLPK 177 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQ 254 ++F +NDE +ANPRNAA+G LR+L+P + R L+ F + + + Q Sbjct: 178 SEFKKINDERAEQELPLFANPRNAAAGTLRQLDPKEVAKRNLDAFFYQIVSPENYELETQ 237 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E+LQ ++ +G R + ++ ++ E R+ L Y IDGLV KV+ Q + Sbjct: 238 WEVLQFLKEIGMKTEPHARLVSDISEVIEFWKEWSESRNNLDYAIDGLVVKVNRIEFQNK 297 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW I+ KF +QA T+LLD+ Q+GRTG++TPVA LEPV + G ++ ATLH Sbjct: 298 LGYTAKSPRWAIAFKFPAEQARTKLLDVTFQVGRTGVITPVAELEPVKLAGTIVKRATLH 357 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N DYI+ RDIR+GD V+V++AGE+IP++V I R + PS C Sbjct: 358 NFDYIR-----------DRDIRIGDTVIVEKAGEIIPQIVKPIAETRSGKEKVIEPPSSC 406 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C +V K + A RC AC A+ R+ FVSR+A +I GLG++ + Sbjct: 407 PVCGGKVG-----KAKEDEVALRCLNP-ACPAKTERRILLFVSRNAMDINGLGEKMIKRL 460 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 S ++ PAD++ L + G G+ ++ N Y + K R L + + Sbjct: 461 VHS----GLVKSPADLYKLTPFDL-----AQLGNGIGEKTIRNFYKELEKSRKRPLHKLL 511 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 LGI VG ++AR LA+++ + L+ VP +G +A+ IVE Sbjct: 512 AGLGIPGVGVKLARDLAEHFKTLDALQNAT----------IDQLLEVPGIGLELAKNIVE 561 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F+ P +E L KEV+ S +K + + K V TGTL+ R +A+E + LG Sbjct: 562 FFNLPEIKEEIEHLKKEVNTSERSSKKEELLKGK--KFVLTGTLKNFTRKEAEELIVSLG 619 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 VS+ +S+ TD ++VG+NPGSK +KA+ L VK +NEE+F+ L+++ Sbjct: 620 GKVSSSVSKNTDFVVVGENPGSKFQKAKALNVKTINEEEFIKLIREGEKN 669 >gi|254776288|ref|ZP_05217804.1| NAD-dependent DNA ligase LigA [Mycobacterium avium subsp. avium ATCC 25291] Length = 681 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 217/709 (30%), Positives = 342/709 (48%), Gaps = 43/709 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R++ L + + H YY PII D+E+DAL A+ P+L + + P Sbjct: 2 RRQWQELAETVREHQFRYYIKDAPIISDAEFDALFNELLALEERHPELRVA---DSPTQL 58 Query: 78 IGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +GG + H LSL+ +++ ++L + R+ K + E KIDG Sbjct: 59 VGGAGFATDFAEAAHLERMLSLDDVFDTDELIAWSNRVENEIGKDPH----YLCELKIDG 114 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVY 192 +++ Y G+ AA RGDG GEDV+ R I +P L +P ++EVRGEV+ Sbjct: 115 VALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLSPSDDFPVPALLEVRGEVF 174 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 DF ALN ++ G+ P+ANPRN+A+G LR+ NP R L HG+G+T Sbjct: 175 FLLADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARRKLRMICHGIGRTEGFSP 234 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 K Q+E + G PV + + R L ++IDG+V KVD+ +L Sbjct: 235 KTQHEAYTALSVWGLPVAEQTARVRGLAAVQERIGYWGEHRYELQHEIDGVVVKVDDVAL 294 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW +++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ + A Sbjct: 295 QRRLGATSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVGLA 354 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN +K + + +GD V++++AG+VIP+V+ +V+ R + F P Sbjct: 355 TLHNAAEVKR-----------KGVLIGDTVMIRKAGDVIPEVLGPVVDLRDGTEREFVMP 403 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C + + + A RC +C AQ ER+ H R A +IEGLG + Sbjct: 404 TTCPECGTPLA-----PAKEGDADIRCPNARSCPAQLRERVFHVAGRGALDIEGLGYEAA 458 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 A I D+F L T G + T L ++ K + ++L Sbjct: 459 TALL----TAGVIADEGDLFALTEDDLLRTELFRTKAGTLSANGTRLLQNLQKAKKVALW 514 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R + +L IRHVG AR+LA + + L V VG IA A Sbjct: 515 RVLVALSIRHVGPTAARALATEFGDLDSIMSA----------STERLAAVEGVGPTIAAA 564 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 + E++ + V+ + +V +E +V TG+L R A+E + Sbjct: 565 LTEWFTVDWHRAIVDKWRAAGVRMADERDASVPRTLEGLTVVVTGSLAGFSRDDAKEAIL 624 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G + +S+KTD ++ GD+PGSK +KA +LGV I++E+ F LL + Sbjct: 625 ARGGKAAGSVSKKTDYVVAGDSPGSKYDKAVELGVPILDEDGFRKLLAE 673 >gi|119487266|ref|ZP_01621017.1| DNA ligase [Lyngbya sp. PCC 8106] gi|119455821|gb|EAW36956.1| DNA ligase [Lyngbya sp. PCC 8106] Length = 685 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 222/711 (31%), Positives = 365/711 (51%), Gaps = 55/711 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +E L+ + ++ + L Q++ YY PII D+ YD L R + +P L Sbjct: 1 MEQLT-SEIQQRVQKLSQQLHLASYAYYVLDAPIIEDAIYDQLYRELQQLETDYPQLI-- 57 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN---- 124 P+ P ++G + V H+IP SLE +N E+L+ + R + + +D Sbjct: 58 -TPDSPTQRVGEKPATQFTSVRHNIPLYSLENAFNTEELKAWDGRWKKVLKTEDKEINYS 116 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPE 183 + E KIDG+ + + YE G V RGDG +GE+++ ++ I +IP L + P Sbjct: 117 EPLYICELKIDGSALALTYENGILVRGTTRGDGVTGEEITQNVKTIRSIPLRLKLESPPS 176 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHG 242 I+EVRGE ++S N F +N E +ANPRNAA+G LR+L+ +R L+FF + Sbjct: 177 IVEVRGEAFLSLNIFAKINQERQQKDESLFANPRNAAAGTLRQLDSRIVRSRQLDFFAYT 236 Query: 243 LG-KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 + + EI K Q++ L+ ++ +GF VN + ++ + +Y+ + S R L Y DG Sbjct: 237 VHLEGEEINLKTQWDCLELLQEMGFKVNPNRQLCHSLTEVQNYFEDWDSRRQNLSYMTDG 296 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V K++ SLQ+QLG + PRW I+ K+ ++A T+LL + +Q+GRTG LTPVA LEP+ Sbjct: 297 VVVKINPLSLQEQLGFTQKFPRWAIALKYPAEEAPTKLLAVTVQVGRTGALTPVAELEPL 356 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G + ATLHN D I L D+ +GD V+V++AGE+IP+VV + R Sbjct: 357 QLAGTTVQRATLHNSDRIAEL-----------DLHIGDTVIVRKAGEIIPEVVRNLPELR 405 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 +AQPF P+ CP C VV+ A RC +C A L H+ SRDA Sbjct: 406 PTNAQPFQMPTHCPECGQAVVKPQTE------AVTRCINT-SCPAILRGSLIHWCSRDAV 458 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +I G+G++ + + + I AD++ L K+ + G+ S T + ++ Sbjct: 459 DINGVGEKLVQQLVERK----LISSVADLYELTVE------KLTQLERIGEKSATKIVNA 508 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 + + + R ++ LGIRHVG+ A L + +L+ + A + V Sbjct: 509 VTESKTQPWARVLYGLGIRHVGSVNAELLTQKFLTVEQLADSTPA----------DIEGV 558 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFT 655 +G IA ++ E+++ P N +E L ++ + + + K V T Sbjct: 559 YGIGTEIAFSVEEWFKVPANQALIERLKQQGLNLASQPSPESSLSQKQDLNLSGKTFVLT 618 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 GTL ++R +A++ + G V+ +S KTD ++VG++ GSKL+KAQ+L + Sbjct: 619 GTLPNLKRDEAKKLIQNAGGKVTGSVSSKTDYVVVGEDAGSKLKKAQELEI 669 >gi|315445158|ref|YP_004078037.1| DNA ligase, NAD-dependent [Mycobacterium sp. Spyr1] gi|315263461|gb|ADU00203.1| DNA ligase, NAD-dependent [Mycobacterium sp. Spyr1] Length = 701 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 221/720 (30%), Positives = 346/720 (48%), Gaps = 47/720 (6%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 +AL + R+ L E+ H YY PII D+E+D L RR A+ +P+L Sbjct: 8 DALDPD-LRRSWQELADEVREHQFRYYIRDAPIITDAEFDQLLRRLQALEDEYPEL---R 63 Query: 70 DPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ P +GG H LSL+ ++++E+L + RI + Sbjct: 64 TPDSPTQLVGGAGFATDFTAAEHLERMLSLDNVFDLEELAAWAARIRTEIGADA----QY 119 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE----I 184 E KIDG + + Y G+ AA RGDG +GEDV+ R I IP LS + Sbjct: 120 LCELKIDGVALALVYRDGRLERAATRGDGRTGEDVTLNARTIEDIPERLSGTNEFPLPTV 179 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +EVRGEV+ DF LN ++A G+ P+ANPRN+A+G LR+ NP R L HGL Sbjct: 180 LEVRGEVFFRVADFEDLNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRRLRMICHGL 239 Query: 244 GKTSEI---FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 G ++ + ++ G PV++ Q + R + ++ID Sbjct: 240 GHVESSGGSPFPTLHDAYRALKAWGLPVSDHTAQVTGLDAVTERIAYWGEHRHDVEHEID 299 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V KVD +LQ++LG +R+PRW +++K+ ++A TRLLDI + +GRTG +TP A +EP Sbjct: 300 GVVVKVDAVALQRRLGATSRAPRWAVAYKYPPEEAQTRLLDIRVNVGRTGRVTPFAYMEP 359 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V + G+ + ATLHN +K + + +GD V++++AG+VIP+V+ +V+ Sbjct: 360 VKVAGSTVGLATLHNASEVKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVDL 408 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R + F FP+ CP C S + + A RC +C AQ ER+ H R A Sbjct: 409 RDGSEREFVFPTHCPECGSELA-----PAKEGDADIRCPNTRSCPAQLRERVFHVAGRGA 463 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 F+IEGLG + +S I D+F L T G + L Sbjct: 464 FDIEGLGYEAATALLQS----GVIADEGDLFGLTADDLLRTELFTTKAGELSANGKRLLA 519 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 ++ K + L R + +L IRHVG AR+LA + S + L Sbjct: 520 NLGKAKAQPLWRVLVALSIRHVGPTAARALATEFGSLEAIETASE----------EQLAG 569 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 VG IA A+++++ + V+ + + ++ +E +V TG+L Sbjct: 570 TEGVGPTIAAAVIDWFTVDWHRAIVDKWREAGVRMADERDASIERTLEGLSIVVTGSLAG 629 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R +A+E + G + +S+KT ++ GD PGSK +KA +LGV +++E+ F LL + Sbjct: 630 FSRDEAKEAIIARGGKAAGSVSKKTAYVVAGDAPGSKYDKAIELGVPVLDEDGFRRLLAE 689 >gi|302865766|ref|YP_003834403.1| DNA ligase, NAD-dependent [Micromonospora aurantiaca ATCC 27029] gi|302568625|gb|ADL44827.1| DNA ligase, NAD-dependent [Micromonospora aurantiaca ATCC 27029] Length = 717 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 224/709 (31%), Positives = 361/709 (50%), Gaps = 43/709 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 AR+ ++L QE++ H YY P + D+E+D R +A+ +P L P+ P Sbjct: 32 ARERHATLSQELTEHQYRYYVLDAPTVTDAEFDKQLRELEALEAEYPAL---RTPDSPTQ 88 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + VTH+ LSL+ + E+L + R+ R + + E K+DG Sbjct: 89 RVGGTFSTDFTPVTHAERMLSLDNAFADEELAAWSERVER----DAGGPVPYLCELKVDG 144 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-----SLNIPEIIEVRGEV 191 I + YEKG+ V AA RGDG +GEDV+A +R+I +P L ++P++IEVRGE+ Sbjct: 145 LAINLTYEKGRLVRAATRGDGRTGEDVTANVRSIKGVPARLTPAGDFPDVPDLIEVRGEI 204 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y F LN ++ G+ P+ANPRNAA+G LR+ +P +R L VHG+G + Sbjct: 205 YFPVAAFADLNASLVEQGKAPFANPRNAAAGSLRQKDPRVTASRPLRLVVHGVGARTGFR 264 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q E ++ G P ++ R + G+ Y R + ++IDG+V KVD S Sbjct: 265 PAAQSESYAALKAWGLPTSDRWRVVDDLAGVAEYIAYYGRHRHDVEHEIDGVVVKVDPVS 324 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q +LG +R+PRW I+ K+ ++ +T+LLDI++++GRTG +TP A L+PV + G+ + Sbjct: 325 IQGRLGSTSRAPRWAIAFKYPPEEVNTKLLDIEVEVGRTGRVTPRAVLQPVRVAGSTVAY 384 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN ++ + + +GD V++++AG+VIP+V+ +V R DA+PF Sbjct: 385 ATLHNAREVER-----------KGVLIGDTVVLRKAGDVIPEVLGPVVELRPADARPFVM 433 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C + + + RC G AC Q ER+ + SR +IE LG++ Sbjct: 434 PTTCPACGTPLA-----PAKESDVDIRCPNGRACPGQIRERVFYLASRKVLDIEVLGEKG 488 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ I D+F L Q + + N G + T L D++ + + L Sbjct: 489 AAALLDAQ----IITNEGDLFQLDAEQLSRSPFFVNKDGSLGSNATKLLDNLAEAKERDL 544 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R + +L IRHVG A++LA+++ S + A L V VG IA Sbjct: 545 WRVLVALSIRHVGPTAAQALARHFRS----------VAAIEAAGEEELSSVDGVGPTIAA 594 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ E++ + V + ++ +V TGTL R +A E + Sbjct: 595 SVKEWFAVDWHRDVVRKWAEAGVRMAEEAADEGPRPLDGITVVVTGTLSGFSRDQAAEAI 654 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G V+ +S+KT ++VGDNPGSK +KA L + I++E+ F LL Sbjct: 655 QVRGGKVTGSVSKKTGFVVVGDNPGSKADKAATLKLPILDEDGFRVLLD 703 >gi|317132010|ref|YP_004091324.1| DNA ligase, NAD-dependent [Ethanoligenens harbinense YUAN-3] gi|315469989|gb|ADU26593.1| DNA ligase, NAD-dependent [Ethanoligenens harbinense YUAN-3] Length = 661 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 222/704 (31%), Positives = 348/704 (49%), Gaps = 52/704 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 A L + +S H+ YY P I D EYD + R + + A P++ P+ P Sbjct: 2 DAAARAKELRKALSRHNYLYYVLDAPEIEDFEYDRMLRELEELEAAHPEIV---TPDSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GGE V H +P SL+ ++++E++R F R++ ++ + +EPKID Sbjct: 59 QRVGGEAVGQFEPVRHEVPMESLQDVFSVEEVRAFDERMHAALS-----TVRYAVEPKID 113 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y G FV + RGDG +GEDV+A +R + +IP L +EVRGEV++ Sbjct: 114 GLSVALEYRNGLFVRGSTRGDGVTGEDVTANLRTVRSIPLRL-SRPLPFLEVRGEVFMPV 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254 F AL K + NPRNAA+G LR+ NP + L+ FV + + + Sbjct: 173 AKFEALVRAQELREEKLFKNPRNAAAGSLRQKNPKITSARGLDIFVFNIQRIEGATVESH 232 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 ++ LGF V +T + + R +LPY IDG V KVD+F+ ++ Sbjct: 233 LAGHALLKELGFKVVAHTA-CDTLEKTETEITRIGESRGSLPYGIDGAVVKVDDFTARRM 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+ PRW ++ KF ++ T LL IDI +GRTG LTP A LEPV + G+ + A+LH Sbjct: 292 LGSTAKFPRWAVAFKFPPEEKRTGLLSIDINVGRTGALTPTAVLEPVLLAGSTVARASLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED+I+ +DIR+GD V+V++AG++IP++V + + +P+ P+ C Sbjct: 352 NEDFIR-----------EKDIRIGDTVVVRKAGDIIPEIVSVAEH---GGGKPYRMPTAC 397 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + V R+ + A RC C AQ L L HF SRDA +IEG+G ++ Sbjct: 398 PSCGAPVAREKDE------AVLRC-QNPDCPAQLLRHLIHFASRDAMDIEGMGPALVESL 450 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 +R AD++ L + + G S NL +I + L R + Sbjct: 451 VGE----GLVRSIADVYDLNAE------AVAKLERMGKKSAENLIAAIETSKRAGLARLL 500 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LG+R VG + A +A + S + L + +G IIA+ +V Sbjct: 501 YALGVRQVGQKAAGLIAARFGSMERLFSATE----------DELCAIDEIGGIIAENVVR 550 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F+ VE L R ++ + + + V TGTL K R +A++ + LG Sbjct: 551 FFALEDTARLVERLRAAGVDLTAREQEVADTRLSGQIFVLTGTLSKYSREEAKKRIEALG 610 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 V+ +S+KT ++ G+ GSKL+KA LGV +++E F LL Sbjct: 611 GKVTGSVSKKTSYVVAGEEAGSKLDKALALGVPVLDEAAFEQLL 654 >gi|67458584|ref|YP_246208.1| NAD-dependent DNA ligase LigA [Rickettsia felis URRWXCal2] gi|67004117|gb|AAY61043.1| DNA ligase, NAD-dependent [Rickettsia felis URRWXCal2] Length = 706 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 269/695 (38%), Positives = 406/695 (58%), Gaps = 29/695 (4%) Query: 26 QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS 85 +I+ ++ YY P++ DSEYD L + FP L N P KIG ++ Sbjct: 38 DKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLVLE---NSPSKKIGAKITNK 94 Query: 86 LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEK 145 K+TH IP LSL ++ +D+R F+ RI F + + I EPKIDG + Y+ Sbjct: 95 FAKITHQIPMLSLSNAFDEQDVRDFVDRIKNFLRLDEFAPI--FCEPKIDGLSFSAIYKN 152 Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205 G A RGDG+ GED++A I+ I P N PE +EVRGE+YI K DFL LN E Sbjct: 153 GLLTTGATRGDGYVGEDITANIKTIKNFPH-KIDNAPEFLEVRGEIYIEKQDFLNLNKEQ 211 Query: 206 IAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264 GR +ANPRNAA+G LR+L+ + R L +FV+ G T + A Q ++L K++ Sbjct: 212 EEQGRDKFANPRNAAAGSLRQLDASITAQRSLKYFVYSGGVTEQNLASSQEQLLIKLKEF 271 Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 GF VN + N+ I ++Y +K+ R LPY+IDG+VYK+++F+LQ ++G ARSPR+ Sbjct: 272 GFSVNEISKLTNSEEEIFTFYEYLKTNRENLPYEIDGVVYKLNDFALQNRMGFIARSPRF 331 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384 +HKF T+LL I +Q+GRTG LTPVA LEP+ IGG ++ ATLHN I Sbjct: 332 ATAHKFPAIIGRTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSRATLHNFQEIMR--- 388 Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444 +D+R+ D V ++RAG+VIPK+ + + +R D F P FCP C S++ Sbjct: 389 --------KDVRIDDYVFLQRAGDVIPKITGVDIGKRPNDTIAFDTPLFCPSCNSKLHY- 439 Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504 RC GL C AQ ER++HFVS++A +IEGLG++Q++F I Sbjct: 440 -----APEDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQVEFLIDK----GLI 490 Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564 P DIF L+ + +S TK+EN+ G+G SV NL+ +I + +N+SL RFI++LGIRH+G Sbjct: 491 SNPLDIFFLKEKNDSSLTKLENMDGWGKKSVENLFKNIEQSKNVSLPRFIYALGIRHIGE 550 Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 + A+ LA+ + SY NF ++ + ++ D + L + +GD I I++F+ N Sbjct: 551 QNAKLLAREFGSYANFIAQMELLSKNDLDIYQKLNDLEGIGDKILVDIIDFFDVKENTTL 610 Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684 ++ L + ++ + + SS + K +VFTG+L I R +A+ +LGA V+A +S Sbjct: 611 IKKLGEVLNIEDYKETREQSS-LTGKIIVFTGSLPTISRAEAKATAEKLGAKVAASVSSN 669 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 TD+++ G + GSKL+KA++L +KI+ EE++L L++ Sbjct: 670 TDLVVAGVDAGSKLKKAKELNIKIIGEEEWLTLIK 704 >gi|329767007|ref|ZP_08258535.1| DNA ligase [Gemella haemolysans M341] gi|328837732|gb|EGF87357.1| DNA ligase [Gemella haemolysans M341] Length = 663 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 237/708 (33%), Positives = 378/708 (53%), Gaps = 48/708 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++Q ++++S L ++ + YY P I D+EYD L ++ + + P+ N Sbjct: 1 MKQVQEKISKLVSLLNKYSYDYYVEDNPQISDTEYDTLYKQLEKLEENHPEYILE---NS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + K+TH +P LSL ++ EDLR F RI + D+S+ + E K Sbjct: 58 PTQRVGDRVLDEFEKITHKVPMLSLSNTFSTEDLRDFDARISKLV---PDHSVEYICELK 114 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I+I+YE G+ V AA RGDG GEDV+ I+ I +IP+VL N EVRGEVY+ Sbjct: 115 IDGLAISIKYEDGRLVSAATRGDGSIGEDVTENIKTIFSIPKVLKDNR--TFEVRGEVYL 172 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + F LN E + +ANPRNAA+G LR+L+ + Sbjct: 173 PRKSFELLNSERESNNEVLFANPRNAAAGSLRQLDSKIT-AKRRLSAFIYSIVGDDSIVS 231 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q L + PVN + ++ Y N + LPYDIDG+V KV+ +S Q+ Sbjct: 232 QENALNTAKEYDLPVNPNFKLCKNIDEVIDYINYWTEHKKDLPYDIDGIVIKVNSYSTQE 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 ++G +SPRW ++KF E++ +T+LLD+++ +GRTGI+TPVA L+P+ I G+ ++ A+L Sbjct: 292 KVGYTQKSPRWATAYKFPEEELATKLLDVELSVGRTGIITPVAILDPIVISGSTVSKASL 351 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN+D I+ L DI + D V+VK+AGE+IPKVV ++ R + + P+ Sbjct: 352 HNKDIIEEL-----------DIHIDDMVVVKKAGEIIPKVVRVVRELRTESSTKYVMPNT 400 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C + N + C Q + R+ HF SRDA NIEGLG + + Sbjct: 401 CPSCGQQTYTKENDPFTR-------CKNPDCPDQNIRRIIHFASRDALNIEGLGDKVVAT 453 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ I D+F+L+R + S + G+ S NL ++I + SL++ Sbjct: 454 LYEK----GIIAHTIDLFSLEREKLIS------LDRMGEKSADNLLNAIENSKKSSLDKV 503 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGI +VG + + LA+ YL+ N L+ + VG I A++I+ Sbjct: 504 IFALGILNVGKKAGKILAEKYLNLSNLMNAT----------LDELVNLDDVGQITAESIL 553 Query: 614 EFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 ++ + NI + L+K +P E N + K +V TG L ++ R++A+EY+ + Sbjct: 554 DYLSDENNIKFINDLIKVGMNPQYEIQEVNTDNIFAGKTVVLTGKLVELTRNEAKEYLEK 613 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 GA V+ ++ KTD++I G+ GSKL KA+QLG+K++NEE+F ++++ Sbjct: 614 YGAKVTGSVTSKTDLVIAGEKAGSKLAKAEQLGIKVINEEEFANMVRE 661 >gi|116071920|ref|ZP_01469188.1| DNA ligase [Synechococcus sp. BL107] gi|116065543|gb|EAU71301.1| DNA ligase [Synechococcus sp. BL107] Length = 682 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 211/711 (29%), Positives = 340/711 (47%), Gaps = 47/711 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + S L ++ YY P + D+ YD L R + P L + + P ++ Sbjct: 6 ERASELRNLLNTAAHAYYVLDTPTMEDAVYDRLYRELLELEQTTPSLKTA---DSPTQRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG V H I LSL+ ++ +DL + R+ R + + + E KIDG Sbjct: 63 GGAPAEGFTNVEHRIGLLSLDNAFDRDDLNAWNERLLRAIDRPLGSPLELVSELKIDGNA 122 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197 + + Y G AA RGDG GE+++A +R I IP L N PE +E+RGE +I N Sbjct: 123 LALSYRNGVLERAATRGDGQRGEEITANVRTISAIPLRLQLDNPPEWVEIRGEAFIPDNT 182 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N E + G +ANPRNA +G LR+L+P R L+FF + L ++ Q++ Sbjct: 183 FAEINAERESRGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPAQAQPSSQWD 242 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + GF VN I + + + R LPY DG+V K++ LQ + G Sbjct: 243 ALAWLENAGFRVNPNRSLCADLAEINRFSDHWEQGRHDLPYATDGVVVKLNSLVLQDEAG 302 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I+ KF ++A +RLL + +Q+GRTG++TPVA EPV + G ++ ATLHN Sbjct: 303 FTQKSPRWAIALKFPAEEAPSRLLRVVVQVGRTGVITPVAEFEPVALAGTSVSRATLHNA 362 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I L D+ +GD ++V++AGE+IP+VV ++ R A P P CP Sbjct: 363 DRIAEL-----------DLHLGDTIVVRKAGEIIPEVVRVLPELRPSSATPVQLPEHCPE 411 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR+ + AA RC +C A L+H+VS+ A +++GLG + ++ Sbjct: 412 CGSNLVREGDE------AATRCVNS-SCPAILRGGLRHWVSKGALDVDGLGSKLIEQLVD 464 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + AD++ L +S + G+ S NL +++ R S R ++ Sbjct: 465 Q----GLVSSIADLYRLDAALLSS------LDRMGERSANNLIEALTLSRQRSWARQLYG 514 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI H+G A+++ + + + S+ + +G +AQ++ +++ Sbjct: 515 LGIHHIGEVSAKAITAEFPDANSLMEAACT-------TPDSITAIYGIGTELAQSLQQWF 567 Query: 617 QNPRNICAVEALLKEVSPSIGRHE-------KNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 NP N + L + + V TGTL + R +A+E Sbjct: 568 SNPANQQLLNDLRSQGFRFAVDENDHGHVGVAASDQHLTGLTFVLTGTLSTLSRSEAKER 627 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G V+ +S+ TD ++ G+ GSKL KA LG+ I++E LL++ Sbjct: 628 IEASGGKVTGSVSKNTDYLVAGEEAGSKLTKATTLGITILDEAALHDLLKK 678 >gi|194333271|ref|YP_002015131.1| DNA ligase, NAD-dependent [Prosthecochloris aestuarii DSM 271] gi|254781391|sp|B4S4Y6|DNLJ_PROA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|194311089|gb|ACF45484.1| DNA ligase, NAD-dependent [Prosthecochloris aestuarii DSM 271] Length = 675 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 228/716 (31%), Positives = 363/716 (50%), Gaps = 51/716 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + A KE++ L E++ H+ YY ++P I D +D R A+ AFPDL P Sbjct: 1 MQRKDALKEIARLRDELNRHNYRYYVLAQPEISDYAFDQELERLIALEKAFPDLV---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GGE+ VTH P SL +++E++ +F R+ + ++ + F E Sbjct: 58 DSPSQRVGGEITKEFPTVTHRQPMRSLSNTYSLEEVEEFYARVLKLLPEEAGENPEFVAE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP--------RVLSLNIPE 183 K DG +++ Y G V A RG+G G+D++ IR I ++P Sbjct: 118 LKFDGVAVSLLYRDGFLVQGATRGNGVEGDDITPNIRTIGSVPLQLRGGAAMAAEQYGGR 177 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243 IEVRGEV++ K+DF ALN+ + +ANPRNA +G L+ + ++ R FV Sbjct: 178 EIEVRGEVFMRKDDFAALNEGRPE--EEQFANPRNATAGTLKLQDSAEVARRKMMFVAYY 235 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 + + + LQ++ +GF +F I + + R TL YDIDG+V Sbjct: 236 LTDPQCRSMQHVQRLQRLEEMGFYTGGHYSTCRSFDEIRDFIGRWEVDRLTLQYDIDGIV 295 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 K++ + +LG ++SPRW I++K+ +QA T L D+ Q+GR G +TPVA LE V + Sbjct: 296 LKLNNPAFWDELGATSKSPRWAIAYKYPAEQAETVLNDVVFQVGRLGTITPVAELEAVRL 355 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G + +TLHN D I+ L D+R+GDRV+++++GE+IPKV+ ++ R Sbjct: 356 AGTTVKRSTLHNFDEIRRL-----------DVRIGDRVVIEKSGEIIPKVIRVVPGTRRE 404 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 D+ + PS CP+C + ++ N + C +C AQ R+ HF SR+A +I Sbjct: 405 DSSEIAIPSHCPVCGTALLHPENE------VSWYCPNSQSCPAQVKARILHFASRNAMDI 458 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 + LG+ ++ + + D++ L ++ ++ D S NL +I Sbjct: 459 KSLGESLVEQLVHN----GLVADSGDLYRLTAD------EVSHLDRMADKSAMNLLKAIE 508 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K R ER +++LGIRHVG AR LA Y S A L V Sbjct: 509 KSRTREYERVLYALGIRHVGLATARELAAAYHSIDLLASA----------ALEELSCVAD 558 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQ 662 +G +IAQ++ +F++NP + VE L K V+ E K++FTGTL++ Sbjct: 559 IGPVIAQSVHDFFRNPDALALVEKLRTAGLRLAASAPKALVNRNFEGMKVIFTGTLERHS 618 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A V Q G LSRKTD+++ G +PGSKL+KA +LGV+++ EE+F +L Sbjct: 619 RDDAAALVAQRGGKEVKSLSRKTDLVVAGKDPGSKLQKALKLGVRVIGEEEFEAML 674 >gi|126661836|ref|ZP_01732835.1| DNA ligase [Flavobacteria bacterium BAL38] gi|126625215|gb|EAZ95904.1| DNA ligase [Flavobacteria bacterium BAL38] Length = 663 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 232/701 (33%), Positives = 367/701 (52%), Gaps = 47/701 (6%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + +L +E++ H+ YY PII D E+D ++ + PD D N P ++GG Sbjct: 7 IKNLREELNQHNYNYYVLDNPIISDFEFDQKLKQLQDLEIQNPDFF---DENSPTQRVGG 63 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + + + H SL+ ++IEDL+ + TRI + D + +T E K DG I+ Sbjct: 64 MVTKNFETIKHEYRMYSLDNSYSIEDLQDWETRIQKVLG---DVPLEYTCELKYDGASIS 120 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 I YE G+ V A RGDG G+DV+ I+ I +P L + PE ++RGE+ + F Sbjct: 121 ISYENGRLVRAVTRGDGVQGDDVTNNIKTIKAVPIHLKGDFPEKFDIRGEIILPFAGFEK 180 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260 +N E+I +G PY+NPRN ASG L+ + ++ + + + + K Q+E LQK Sbjct: 181 MNQELIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLDCLLYFVIGNNLPFKTQFEGLQK 240 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 R GF V N + A + + + N R LPY+ DG+V KV+ Q++LG A+ Sbjct: 241 ARDWGFKVPNQSKLAKNLNEVFEFINYWDKHRHDLPYETDGVVIKVNNIQHQEELGYTAK 300 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 SPRW +++KF +Q +T+L I Q+GRTG +TPVA LEPV + G ++ A+LHN D I+ Sbjct: 301 SPRWAMAYKFKAEQVTTQLNSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIE 360 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 L DIR+GD V V++ GE+IPK++ + +R A+P + + CP CQ+ Sbjct: 361 KL-----------DIRIGDDVFVEKGGEIIPKIIAV--AKRGNQAEPTKYITHCPECQTE 407 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 +VR A H C C Q + R++HF++R A +I+GLG + + F Sbjct: 408 LVRSEGE------ANHFCPNFYGCPPQIIGRIQHFITRKAMDIDGLGGETVALLFN---- 457 Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560 A + AD++ L++ Q + + S NL + I K + I ER +++LGIR Sbjct: 458 AGLVTNYADLYELKKEQIV------PLERMAEKSAENLINGIEKSKTIPFERVLYALGIR 511 Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 +VG +A+ LAK+Y S A + LI V +GD IAQ++++F+ N Sbjct: 512 YVGETVAKKLAKHYKSIDAIANA----------SVMDLILVDEIGDKIAQSVMQFFDNQE 561 Query: 621 NICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 NI ++ L + VS +++ K V +G + R + ++ + G V + Sbjct: 562 NIRIIDKLKSFGVQLESDVEDVLVSEKLKGKTFVVSGVFEIYSRDELKKSIEDNGGKVGS 621 Query: 680 ILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 +S KTD +I GDN G SKLEKA QL + I++E F ++ Sbjct: 622 SISSKTDFVIAGDNMGPSKLEKANQLKIAIISEIDFKQMID 662 >gi|283458551|ref|YP_003363181.1| NAD-dependent DNA ligase [Rothia mucilaginosa DY-18] gi|283134596|dbj|BAI65361.1| NAD-dependent DNA ligase [Rothia mucilaginosa DY-18] Length = 747 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 239/733 (32%), Positives = 367/733 (50%), Gaps = 57/733 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E R E + L +I YY P + D+EYDAL RR + I P L + + P Sbjct: 33 EALRAEYAELTDKIRAARRAYYNEDAPFLSDAEYDALYRRLEIIEAEHPHLIAN---DSP 89 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GGE + VTH SLE +++ E+LR ++T+ + ++ + E KI Sbjct: 90 TQEVGGEAIEAFAPVTHLQRMYSLEDVFSFEELRAWLTKTEESARNLTGSAPQWLTELKI 149 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193 DG + + Y G V AA RGDG +GEDV+ +R I +IP+ L+ N PE IE+RGEV+I Sbjct: 150 DGLAVNLLYRNGTLVRAATRGDGTTGEDVTHNVRTIASIPQQLTGENHPEEIEIRGEVFI 209 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 S DF LN+ MIA G+ P+ANPRNAA+G LR+ + +R L+ +VHG+G + + Sbjct: 210 SSADFEKLNESMIAAGKNPFANPRNAAAGSLRQKDAAVTASRPLSMYVHGIGSRTGLDIA 269 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 QYE + G PV+ A+ + + N+ R +L ++IDG+V KV++F+ Q Sbjct: 270 TQYETYDLLASWGLPVSPYSEIADNTEAVFDFINKYGEQRHSLVHEIDGIVIKVNDFATQ 329 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 QLG +R PRW +++K+ ++ T+LLDI + +GRTG +TP +EPV + G+ + AT Sbjct: 330 AQLGYTSRVPRWAVAYKYPPEEVHTKLLDIRVDVGRTGRVTPYGVMEPVFVSGSTVERAT 389 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN+D +K + + +GD V++++AG+VIP++V +V R + F PS Sbjct: 390 LHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEIVAPVVALRDGTEREFVMPS 438 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S + + RCT +C AQ ER+ + SR AF+IE LG + Sbjct: 439 ECPSCGSPLA-----PGKEGDVDLRCTNPRSCPAQLTERVYYAASRGAFDIEALGFEAAK 493 Query: 493 FFFKSEDP-AFSIRIPADIFTLQRRQ-------------------------QTSTTKIEN 526 P + A +F+L + Sbjct: 494 ALTSPATPDTPPLTTEAHLFSLNIEDLREVTIEREKKVKGVGTGKMERVPYFYTKPTKAR 553 Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 + NL+ + K + L R + +L IRHVG AR+LA + S Q + Sbjct: 554 PEPKPTKNTLNLFAELEKAKQQPLWRVLVALSIRHVGPTAARALAAEFGSMQAIREA--- 610 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 D L V VG IA +I+E++ + V++ +++V Sbjct: 611 -------DRERLAAVDGVGTTIADSIIEWFAEDWHAEVVDSWAAAGVRMEDSRDESVERT 663 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 +E +V TGTL R A+E + G S +S+KT ++ G N GSKL+KAQQLG+ Sbjct: 664 LEGLTVVVTGTLNGYTRDGAKEAIISRGGKASGSVSKKTHFVVAGANAGSKLDKAQQLGL 723 Query: 707 KIMNEEQFLFLLQ 719 KI++EE F LL+ Sbjct: 724 KILDEEGFTALLE 736 >gi|154498024|ref|ZP_02036402.1| hypothetical protein BACCAP_02004 [Bacteroides capillosus ATCC 29799] gi|150273014|gb|EDN00171.1| hypothetical protein BACCAP_02004 [Bacteroides capillosus ATCC 29799] Length = 664 Score = 528 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 228/713 (31%), Positives = 368/713 (51%), Gaps = 50/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ +E++ L E++ YY P + D ++D RR + + A PD + Sbjct: 1 MDEI-QEIALLRAELNKASYEYYVLDNPTMSDYDFDHKLRRLEELEQAHPDQI---TEDS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG++ +VTH +P SL+ ++++E+L F+ R+ D F +EPK Sbjct: 57 PTRRVGGQVADGFQEVTHEVPLESLQDVFDLEELGDFVRRVQESL----DGKAEFDVEPK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG + + Y G FV A RGDG GEDV+ ++ I ++P L IP++I VRGEVY+ Sbjct: 113 VDGLSVALEYRDGLFVRGATRGDGRVGEDVTENLKTIRSLPLRLPEPIPQLI-VRGEVYM 171 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAK 252 SK F LN+E G +ANPRNAA+G LR+L+P +R L+ V + K Sbjct: 172 SKKVFEQLNEEREIRGEALFANPRNAAAGSLRQLDPKVAASRKLDIVVFNIQKAEGAEFS 231 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 E L + F V + I + + R PYDIDG V K++ + + Sbjct: 232 THTETLDYLERQQFRVIPRT-LCTSMEEIGTRIAAIGDGREEFPYDIDGAVVKLNSLADR 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 K LG A+ PRW ++K+ +Q + + DI +Q+GRTG+LTP A ++PV + G +TNAT Sbjct: 291 KILGSTAKFPRWAAAYKYPPEQKESVVEDIVVQVGRTGVLTPKAVVKPVRLAGTTVTNAT 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN+D+I +DIR+GD VLV++AGE+IP++V ++ +R P+ P Sbjct: 351 LHNQDFI-----------TEKDIRIGDTVLVQKAGEIIPEIVSVVKEKRPEGTVPYHLPD 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C + V RD + A RCTG C AQ L L HF SRDA +I+GLG ++ Sbjct: 400 HCPVCGAPVARDED------GAHIRCTGA-ECPAQLLRHLAHFASRDAMDIDGLGPAVME 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 A ++ PAD+++L + + G S NL +I++ + L R Sbjct: 453 ALIS----AGMVKTPADLYSLAPE------AVAQLDRMGKKSAENLAAAIDRSKGAGLAR 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F+ GIR VG + + LA ++ + VP VG I A+++ Sbjct: 503 LLFAFGIRQVGQKAGKILASHFSTMDALLAATE----------EDFTAVPDVGAITAKSL 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 ++ + ++ ++AL + + + K V TG+L++ R +A + Sbjct: 553 WDWLHSHQSQHLIQALREAGVVM-ENTDAPTGDALTGKTFVLTGSLERFTRAEAGAQIEA 611 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 LG VS +S+KT ++ G+ GSKL+KAQ LG+ ++ EE+FL +L++ T+ Sbjct: 612 LGGKVSGSVSKKTSYVVAGEAAGSKLKKAQDLGIPVLTEEEFLIMLRELGATI 664 >gi|313637419|gb|EFS02883.1| DNA ligase, NAD-dependent [Listeria seeligeri FSL S4-171] Length = 671 Score = 528 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 246/711 (34%), Positives = 369/711 (51%), Gaps = 53/711 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K L + + YY P + D+EYD + I A P+ P P + Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLQIEEAHPEWV---TPESPSKR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ KV H P LSL +N DL F RI K I + E KIDG Sbjct: 61 VGGEVLEGFQKVAHDTPMLSLANAFNKGDLADFDRRIRD----KVGEDIAYMCELKIDGL 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 ++++YEKGK+ A RGDG +GED++A +R I +IP L + IEVRGE ++ K Sbjct: 117 AVSLQYEKGKYKQGATRGDGTTGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 174 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+ G+ +ANPRNAA+G LR+L+ +R L+ F++ + E+ + Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVTTHSD 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R + +Y +E R+ L YDIDG+V K+++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCANLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNDLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 TTAKSPRWSIAYKFPAEEVPTKLLDIELNIGRTGVVTPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D + +DIR+GD VL+K+AG++IP+V+ I ER D +PF P CP Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEERTGDEKPFHMPKNCPT 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CGSDLVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFT 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L + K+ + G+ SVTNL SI + + SLE+ +F Sbjct: 457 H----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEQSKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N D +L + +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAIHFETMDNLKLA----------DKETLTSINDIGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 N ++ L + K K +V TG L+++ R+ A+ + Sbjct: 557 ANEEVHDLLDELKRANVNMTYTGPKLENMSEEELVFAGKTVVLTGKLEQLTRNDAKALIE 616 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LG VS +S+KTD+++ G + GSKL KA++L + I +E + L Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSENDLIEYLPDEG 667 >gi|300771799|ref|ZP_07081670.1| NAD-dependent DNA ligase LigA [Sphingobacterium spiritivorum ATCC 33861] gi|300761185|gb|EFK58010.1| NAD-dependent DNA ligase LigA [Sphingobacterium spiritivorum ATCC 33861] Length = 673 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 216/714 (30%), Positives = 369/714 (51%), Gaps = 48/714 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + +++++ L QE+++++ YY ++ +I D ++D + +A+ +P A DP Sbjct: 1 MSAVEIQEKIAQLTQELNHYNYQYYVLAQSLISDYDFDQKLKELEALESQYPQFA---DP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++GG++ V H P LSL ++ ++LR F RI + + + E Sbjct: 58 NSPTRRVGGDITSRFNTVKHRWPMLSLGNTYSQDELRDFDQRIRKIIG----DDFEYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 K DG I++ Y+ GK V RGDG G++V+A +R I +IP + + + PE E+RGE Sbjct: 114 LKFDGLSISLTYKDGKLVQGVTRGDGTQGDEVTANVRTIRSIPLTLKTKDYPEEFEIRGE 173 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NFFVHGLGKTSE 248 +++ K+ FL LN E G + YANPRN A+G ++ + ++ R F Sbjct: 174 IFMHKSAFLRLNKEREENGDQIYANPRNFAAGTIKLQDSAEVARRPLDCFLYFLYMDNRR 233 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 +E L+ +R GF V + R + + S+ N + R L Y+IDG+V KV++ Sbjct: 234 KHFSTHWESLEAVRKWGFHVCDHTRLCSNIDDVFSFINYWDTERHNLSYEIDGIVIKVND 293 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 ++ Q++LG A++PRW S+KF ++ T L I Q+GRTG +TPVA L+PV++ G + Sbjct: 294 YAQQEELGFTAKNPRWATSYKFKAERVETILKSISYQVGRTGAVTPVANLQPVSLAGTTV 353 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A+LHN + I L D+ D V V++ GE+IPKV+ + +R PDA PF Sbjct: 354 KRASLHNANEIARL-----------DLHEQDTVYVEKGGEIIPKVIAANLEKRKPDAIPF 402 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 +P+ CP CQ+ +VR+ A H C C Q + +++HF+ R +IEG+G Sbjct: 403 HYPTHCPECQTLLVREEGE------AVHYCPNEDGCPPQIIGKMQHFIGRKMMDIEGMGN 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ FFK IR DI++L+ ++ ++ + FG S+ N+ I K + Sbjct: 457 ETIETFFKK----GLIRNVVDIYSLKEHEE----DLQKLERFGQKSIDNMLRGIEKSKEK 508 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 E+ +F+LGIRHVG IA+ LA Y+ + AQ + V +G I Sbjct: 509 PFEKVLFALGIRHVGETIAKKLALYFKNIDALAQA----------SVEEIASVQDIGGRI 558 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKA 666 A+++ ++ P + ++ L ++ V + +E K + +G R + Sbjct: 559 AESVHQYLNTPIHQQQIQKLKDYGLQFEIEEKEVVLAGNGLEGKTFLISGVFADFSREEL 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + G + + +S K + ++ GD G SKL KA++L V I+NE++ L L+ Sbjct: 619 TALIESHGGKMVSSISAKLNYLVAGDKMGPSKLAKAEKLQVPIINEQELLVLIN 672 >gi|78185772|ref|YP_378206.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CC9902] gi|123743489|sp|Q3AUH7|DNLJ_SYNS9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|78170066|gb|ABB27163.1| DNA ligase (NAD+) [Synechococcus sp. CC9902] Length = 680 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 208/711 (29%), Positives = 341/711 (47%), Gaps = 47/711 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L ++ YY P + D+ YD L + + P L + + P ++ Sbjct: 6 ERATELRNLLNTAAHAYYVLDTPTMEDAVYDRLYQELLELEQNTPSLKTA---DSPTQRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG V H I LSL+ +N +DL + R+ R + + + E KIDG Sbjct: 63 GGAPAEGFTSVEHRIGLLSLDNAFNRDDLSAWNERLLRAIDRPLGSPLDLVSELKIDGNA 122 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197 + + Y G AA RGDG GE+++A +R I IP L N PE +E+RGE +I N Sbjct: 123 LALSYRNGVLERAATRGDGQRGEEITANVRTISAIPLRLRLDNPPEWVEIRGEAFIPDNT 182 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N E + G +ANPRNA +G LR+L+P R L+FF + L ++ Q++ Sbjct: 183 FAEINAERESRGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPTQEQPASQWD 242 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + GF VN I + + + R LPY DG+V K++ LQ + G Sbjct: 243 ALTWLENAGFRVNPNRALCADLADINRFSDHWEQARHDLPYATDGVVVKLNNLVLQDEAG 302 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I+ KF ++A +RLL + +QIGRTG++TPVA EPV + G ++ ATLHN Sbjct: 303 FTQKSPRWAIALKFPAEEAPSRLLRVVVQIGRTGVITPVAEFEPVALAGTSVSRATLHNA 362 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I L D+ +GD ++V++AGE+IP+VV ++ R A P P CP Sbjct: 363 DRIAEL-----------DLHLGDTIVVRKAGEIIPEVVRVLPELRPSSATPVQLPEHCPE 411 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR+ + + +C A L+H+VS+ A +++GLG + ++ Sbjct: 412 CGSNLVREGDEVATR-------CVNSSCPAILRGGLRHWVSKGALDVDGLGSKLIEQLVD 464 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 +R AD++ L ++ G+ S NL +++ R S R ++ Sbjct: 465 Q----GLVRSIADLYRLDAALL------GSLDRMGERSANNLIEALKLSRQRSWARQLYG 514 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI H+G A+++ + + + + + +G +AQ++ +++ Sbjct: 515 LGIHHIGEVSAKAITAEFSDSNSLMEAACT-------APERITAIYGIGTELAQSLQQWF 567 Query: 617 QNPRNICAVEALLKEVSPSIGRH-------EKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 NP N ++ L + ++ V TGTL + R +A+E Sbjct: 568 SNPANQHLLDDLRSQGFRFALDDNDPGRLGAAASEQHLKGLTFVLTGTLPTLSRSEAKER 627 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G VS +S+KTD ++ G+ GSKL KA LG+KI++E++ +L+ Sbjct: 628 IETCGGKVSGSVSKKTDYLVAGEEAGSKLTKATTLGIKILDEDRLQAMLKD 678 >gi|323143662|ref|ZP_08078336.1| DNA ligase (NAD+) [Succinatimonas hippei YIT 12066] gi|322416595|gb|EFY07255.1| DNA ligase (NAD+) [Succinatimonas hippei YIT 12066] Length = 696 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 249/724 (34%), Positives = 389/724 (53%), Gaps = 57/724 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 L ++ + YY PI+ DSEYD L R+ + + A P + P+ P ++GG Sbjct: 8 YKDLVALLNRYAKAYYVDDDPIVTDSEYDRLYRQLEIMEQADPTII---SPDSPTRRVGG 64 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + + VTH +P LSL I+++ +L F RI F ++ + + EPK+DG ++ Sbjct: 65 QALSAFASVTHRVPLLSLGDIFSVSELNDFNERICDFTHEE---KVEYCAEPKLDGLAVS 121 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII-EVRGEVYISKNDFL 199 + YE G V AA RGDG GED++ + I IP LS +VRGEV++ ++ F Sbjct: 122 LIYENGLLVKAATRGDGRVGEDITENAKTIKAIPLRLSGENVPSYLDVRGEVFMPRDGFE 181 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 N+ G K +ANPRNAA+G LR+L+ R L F + +G+ S QY+ L Sbjct: 182 KWNERARQNGGKVFANPRNAAAGSLRQLDSKITAKRPLTFNAYYIGECSNELPDTQYDRL 241 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ G PVN +++ G+ +YN++ R L YDIDG+V KV+ +Q+ +G Sbjct: 242 MSVKGWGIPVNPLIKKVYGIKGLSDFYNDILQKRPGLNYDIDGVVLKVNSIPVQEDMGFT 301 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 AR+PRW I++KF ++ TRLLD++ Q+GRTG +TPVARL+PV +GGA ++NATLHNED Sbjct: 302 ARTPRWAIAYKFPPEEEITRLLDVEFQVGRTGAVTPVARLDPVYVGGATVSNATLHNEDE 361 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA-QPFSFPSFCPIC 437 I+ L ++ +GD V+V+RAG+VIP+V +++ R D +P FP+ CP C Sbjct: 362 IRRL-----------NLMIGDYVIVRRAGDVIPQVAGVVLERREKDKVKPIVFPTECPEC 410 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S + R A RC+GGL C AQ E + HFVSR+A +IEG G + ++ S Sbjct: 411 GSLIERVKGE------AVARCSGGLVCPAQLRESVLHFVSRNAMDIEGFGDRIVEQLVLS 464 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS-----INKRRNISLER 552 ++ AD+++L S + + + I K R I+L R Sbjct: 465 ----GKVKSIADLYSLGENDLASLVLDDGSPERKPRLLGMITAKKLKAAIEKSRTIALNR 520 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FI++LGIR VG A +LA ++ + + + L+++P +G ++A I Sbjct: 521 FIYALGIREVGESTALTLATHFETLNDIMRA----------SVEDLMKLPDIGVVVANHI 570 Query: 613 VEFYQNPRNICAVEALLKEVSPSI------------GRHEKNVSSEIENKKLVFTGTLQK 660 +F++ P N+ +E L+ + + S + + V TGTL Sbjct: 571 YDFFKEPHNLDIIERLVPSADIPLFSAGLTLLPCAQASVQTAQSMPLMGQTYVLTGTLSI 630 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R+KA+ + LGA VS +S+KT +I G +PGSKL KAQ+LGVK+M E+ F+ LL++ Sbjct: 631 MDRNKAKNLLQSLGAKVSGSVSKKTYAVIAGADPGSKLVKAQELGVKVMTEDDFIALLKE 690 Query: 721 YNTT 724 + + Sbjct: 691 HGLS 694 >gi|302524940|ref|ZP_07277282.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4] gi|302433835|gb|EFL05651.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4] Length = 707 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 221/712 (31%), Positives = 342/712 (48%), Gaps = 43/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 R+ +L +EI H YY PII D ++DAL I +P L P+ Sbjct: 11 PADVRERHGALAEEIRGHQFRYYVLDSPIISDGQFDALLGDLQKIEDEYPALV---TPDS 67 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +GG + H LSL+ ++ E+ ++ R+ + + E K Sbjct: 68 PTQNVGGTFSTEFTAHDHLERMLSLDNVFTAEEFLAWVERVEKEIGSA-----EYLAELK 122 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRG 189 IDG I + YE GK RGDG +GEDV+ IR + +P L+ P+++EVRG Sbjct: 123 IDGLAINLLYENGKLTRGLTRGDGRTGEDVTLNIRTLDQVPDRLTGTDEFPVPKLVEVRG 182 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EVY DFL LN +M+ G+ PYANPRN A+G LR+ +P R L HGLGK Sbjct: 183 EVYFRVEDFLELNAKMVEAGKLPYANPRNTAAGSLRQKDPKITRERRLRLICHGLGKRDG 242 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q + G PV+ R T + + R ++IDG+V KVD+ Sbjct: 243 FEPVTQSHAYDALAAWGLPVSPYTRVLRTGKELTEHIAYWGEHRHDAEHEIDGVVIKVDQ 302 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ++LG +R+PRW I++K+ ++A T LLDI + +GRTG +TP A EPV + G+ + Sbjct: 303 VALQRRLGTTSRAPRWAIAYKYPPEEAITMLLDIQVGVGRTGRVTPFAVTEPVKVAGSTV 362 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATLHN++ +K + + +GDR+++++AGEVIP+V+ +V+ R D + F Sbjct: 363 ARATLHNQEEVKR-----------KGVLIGDRIVIRKAGEVIPEVLGPVVDARTGDEREF 411 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C +++ + RC C AQ ERL H R AF+IE LG Sbjct: 412 VMPTECPECGTKLAYQ-----KEGDKDIRCPNSQFCPAQLRERLFHLAGRGAFDIEVLGY 466 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + A + D+F L G + L +++ ++ Sbjct: 467 EAAVALLD----ARVVADEGDVFDLNEESLAEVELFRTKAGDLSANARKLLVNLDSAKDR 522 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L + I +L IRHVG A++LA+ + S Q L V VG I Sbjct: 523 PLWKVIVALSIRHVGPTAAQALAREFGSLQRIEDTTE----------EELADVDGVGPTI 572 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A A+ E+++ + VE + ++++ +E +V TG+L R +A+E Sbjct: 573 AHAVQEWFEVDWHREIVEKWRRAGVRMEEERDESIPRNLEGLSIVVTGSLDGFSRDEAKE 632 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G + +S+KT ++VGD PGSK +KA QL V +++E F LL++ Sbjct: 633 AIMARGGKAAGSVSKKTSFVVVGDAPGSKYDKAVQLKVPVLDENGFRALLER 684 >gi|296046593|gb|ADG86438.1| NAD-dependent DNA ligase [synthetic construct] Length = 689 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 247/712 (34%), Positives = 390/712 (54%), Gaps = 61/712 (8%) Query: 33 DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHS 92 YY +P + D+EYD L + P+L + P K+GG+ S +VTH Sbjct: 20 HEYYVLDQPSVPDAEYDRLMTALIDLEKTNPELKTI---DSPSQKVGGQALKSFTQVTHQ 76 Query: 93 IPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152 +P LSL+ +++++D F+ R+ D+ +I F EPK+DG +++RYE G+ + AA Sbjct: 77 LPMLSLDNVFSLDDFHAFVKRVKDRLN--DNQAIVFCAEPKLDGLAVSLRYEHGQLIQAA 134 Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGEVYISKNDFLALNDEMIAV 208 RGDG GE+++ IR I +IP L + P+I+EVRGEV++ K F ALN Sbjct: 135 TRGDGSVGENITTNIRTIKSIPLKLMGTPGKDFPDIVEVRGEVFMPKASFDALNTLAKKR 194 Query: 209 GRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK--------------TSEIFAKG 253 G K +ANPRNAA+G LR+L+ R L F+ + LG T++ FA Sbjct: 195 GEKGFANPRNAAAGSLRQLDSKITAKRNLAFYAYSLGFVGKLSDGGAESTDLTNDFFANS 254 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +E L +++ LG P+ VR + ++Y ++ + RS L Y+IDG V KVDE SLQK Sbjct: 255 HHERLCQLKRLGLPMCPEVRLLESEQACDAFYQDILAKRSALSYEIDGTVLKVDEISLQK 314 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG AR+PRW I++KF ++ T + D++ Q+GRTG +TPVARL+PV +GG ++NATL Sbjct: 315 RLGFVARAPRWAIAYKFPAEEELTCVEDVEFQVGRTGAITPVARLKPVFVGGVTVSNATL 374 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN+D I L ++V D V+++RAG+VIP++V +++++R +A FP+ Sbjct: 375 HNQDEITRL-----------GLKVNDFVVIRRAGDVIPQIVSVVLDKRPDNAVDIVFPTS 423 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S V + A RCT GL C+AQ+ E +KHF SR A +++GLG + ++ Sbjct: 424 CPVCDSAVAKPEGE------AVLRCTAGLFCAAQRKEAIKHFASRKAHDVDGLGDKLVEQ 477 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + I PAD+F L Q ++ I G S TNL + + + ++ +L +F Sbjct: 478 LVDEK----LINTPADLFKLTEIQVST------IDRMGKKSATNLINGLEQAKSTTLAKF 527 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I+ LGIR VG A +LA ++ + L V VG+++A+ I+ Sbjct: 528 IYGLGIREVGEATAANLANHFYTLAAIESA----------SLEDLQNVSDVGEVVAKNII 577 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F++ N+ V L + + + + + V TGTL ++ R +A+ + L Sbjct: 578 NFFKEEHNLAIVSGLSEVMHWPTIEIKSAEELPLAEQIFVLTGTLTQMGRTEAKTALQSL 637 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 GA VS +S+ T ++ GD GSKL KAQ LG+ ++ E+ + LL ++ T+ Sbjct: 638 GAKVSGSVSKNTHFVVAGDKAGSKLTKAQDLGISVLTEDGLVALLAEHGITI 689 >gi|148652285|ref|YP_001279378.1| DNA ligase [Psychrobacter sp. PRwf-1] gi|190359276|sp|A5WCN7|DNLJ_PSYWF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148571369|gb|ABQ93428.1| DNA ligase, NAD-dependent [Psychrobacter sp. PRwf-1] Length = 686 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 241/709 (33%), Positives = 372/709 (52%), Gaps = 45/709 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 ++ ++ +L ++ H++ YY +P I D+EYD L+ + +P+L + P+ P Sbjct: 15 QEVIAKMRTLIAQVRKHNNAYYVMDEPTISDNEYDQLRLSLIELEERYPELTQ---PDSP 71 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +G S +V H I LSL I+N +DL++F+ R+ D N + +E K+ Sbjct: 72 TASVGDNPLPSFSQVQHDIAMLSLGNIFNYQDLQEFMRRVNDRLSDADRNP-EYEIEMKL 130 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193 DG ++++Y G+FV RGDG GED++ ++ I IP + + +++EVRGEV + Sbjct: 131 DGLAVSLKYHNGQFVRGVTRGDGQMGEDITQNVKTINNIPLVIEAAQDIDVLEVRGEVLM 190 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAK 252 K F LN G K +ANPRNAA+G LR+L+P F+ + + + Sbjct: 191 PKAGFKRLNRLAQENGDKTFANPRNAAAGSLRQLDPAVAASRPLAFYAYSVNQGLPEAIT 250 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q L ++ LGF + + T + YY M R+ L ++IDG+V KVD+ +LQ Sbjct: 251 LQSAALTWLKQLGF-TVSDFERVKTAQQVQDYYESMIQKRADLAFEIDGMVIKVDDLTLQ 309 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 QLG +R PRW ++KF + T L I+ Q+GRTG LTPV +LEPV +GG ++N T Sbjct: 310 SQLGALSREPRWATAYKFPAETVMTTLNSIEWQVGRTGQLTPVGKLEPVQVGGVTVSNVT 369 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN I+ L D+R GD V V RAG+VIPKV + + R + P+ Sbjct: 370 LHNFGEIQRL-----------DVRAGDTVSVHRAGDVIPKVTRVWHDLRPEGTSAVTLPT 418 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S VV A RCTG L C AQQ E L HFVSR A +I+GLG++ L Sbjct: 419 HCPVCDSPVVLPEGE------ALARCTGELFCPAQQQEALIHFVSRKAMDIDGLGERWLI 472 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 FF+ ++ ADI+ L ++ + G+ SV+N+ +I + + +L R Sbjct: 473 SFFEH----GIVKTVADIYHLNEH----ADELVTLEKLGEKSVSNMLRAIEESKKTTLAR 524 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FI++LGIR VG A++LA+Y+ +L VP VG I A+ I Sbjct: 525 FIYALGIRGVGETTAQNLAQYFGDLPELMGA----------SIDALEAVPDVGHITAELI 574 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTL--QKIQRHKAQEY 669 F++ NI + AL + ++ + + +E + V TGTL + R A+ + Sbjct: 575 YNFFRAEHNIEVINALQQAGVYWDKVEQQALDNLPLEGQTWVITGTLVASGMSRDDAKAH 634 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA VS +S KT ++ G+ GSKL KAQ LGV+++ E++FL ++ Sbjct: 635 LQALGAKVSGSVSAKTSALLAGEKAGSKLTKAQSLGVRVVLEDEFLKMI 683 >gi|71281008|ref|YP_270140.1| DNA ligase, NAD-dependent [Colwellia psychrerythraea 34H] gi|123774873|sp|Q47YI0|DNLJ_COLP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|71146748|gb|AAZ27221.1| DNA ligase, NAD-dependent [Colwellia psychrerythraea 34H] Length = 689 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 247/712 (34%), Positives = 390/712 (54%), Gaps = 61/712 (8%) Query: 33 DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHS 92 YY +P + D+EYD L + P+L + P K+GG+ S +VTH Sbjct: 20 HEYYVLDQPSVPDAEYDRLMTALIDLEKTNPELKTI---DSPSQKVGGQALKSFTQVTHQ 76 Query: 93 IPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152 +P LSL+ +++++D F+ R+ D+ +I F EPK+DG +++RYE G+ + AA Sbjct: 77 LPMLSLDNVFSLDDFHAFVKRVKDRLN--DNQAIVFCAEPKLDGLAVSLRYEHGQLIQAA 134 Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGEVYISKNDFLALNDEMIAV 208 RGDG GE+++ IR I +IP L + P+I+EVRGEV++ K F ALN Sbjct: 135 TRGDGSVGENITTNIRTIKSIPLKLMGTPGKDFPDIVEVRGEVFMPKASFDALNTLAKKR 194 Query: 209 GRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK--------------TSEIFAKG 253 G K +ANPRNAA+G LR+L+ R L F+ + LG T++ FA Sbjct: 195 GEKGFANPRNAAAGSLRQLDSKITAKRNLAFYAYSLGFVGKLSDGGAESTDLTNDFFANS 254 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +E L +++ LG P+ VR + ++Y ++ + RS L Y+IDG V KVDE SLQK Sbjct: 255 HHERLCQLKRLGLPMCPEVRLLESEQACDAFYQDILAKRSALSYEIDGTVLKVDEISLQK 314 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG AR+PRW I++KF ++ T + D++ Q+GRTG +TPVARL+PV +GG ++NATL Sbjct: 315 RLGFVARAPRWAIAYKFPAEEELTCVEDVEFQVGRTGAITPVARLKPVFVGGVTVSNATL 374 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN+D I L ++V D V+++RAG+VIP++V +++++R +A FP+ Sbjct: 375 HNQDEITRL-----------GLKVNDFVVIRRAGDVIPQIVSVVLDKRPDNAVDIVFPTS 423 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S V + A RCT GL C+AQ+ E +KHF SR A +++GLG + ++ Sbjct: 424 CPVCDSAVAKPEGE------AVLRCTAGLFCAAQRKEAIKHFASRKAHDVDGLGDKLVEQ 477 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + I PAD+F L Q ++ I G S TNL + + + ++ +L +F Sbjct: 478 LVDEK----LINTPADLFKLTEIQVST------IDRMGKKSATNLINGLEQAKSTTLAKF 527 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I+ LGIR VG A +LA ++ + L V VG+++A+ I+ Sbjct: 528 IYGLGIREVGEATAANLANHFYTLAAIESA----------SLEDLQNVSDVGEVVAKNII 577 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F++ N+ V L + + + + + V TGTL ++ R +A+ + L Sbjct: 578 NFFKEEHNLAIVSGLSEVMHWPTIEIKSAEELPLAEQIFVLTGTLTQMGRTEAKTALQSL 637 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 GA VS +S+ T ++ GD GSKL KAQ LG+ ++ E+ + LL ++ T+ Sbjct: 638 GAKVSGSVSKNTHFVVAGDKAGSKLTKAQDLGISVLTEDGLVALLAEHGITI 689 >gi|332529208|ref|ZP_08405172.1| DNA ligase [Hylemonella gracilis ATCC 19624] gi|332041431|gb|EGI77793.1| DNA ligase [Hylemonella gracilis ATCC 19624] Length = 738 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 246/744 (33%), Positives = 384/744 (51%), Gaps = 91/744 (12%) Query: 27 EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86 ++ +H YY P I D+EYD L + AI A P+L P+ P ++ G++ L Sbjct: 31 QLHHHAHRYYVLDAPEIPDAEYDRLFQELQAIEAAHPEL---RTPDSPTQRVIGQVLDGL 87 Query: 87 FKVTHSIPTLSLEKIWN--IEDLRKFITRIYRFWQKKDD-NSIFFTLEPKIDGTMITIRY 143 V H++P LS++ + E R F TR+ + + + + + E K DG I +RY Sbjct: 88 LPVRHAVPMLSIDTETDTTPEGARAFDTRVRKALGLGEGASPVEYAAELKFDGLAINLRY 147 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIP----------------------------- 174 E+G V AA RGDG +GEDV+ IR I IP Sbjct: 148 ERGVLVQAATRGDGETGEDVTQNIRTINQIPLRLLAPTLPAARGSLPPSPSNAQDALEPG 207 Query: 175 ----------RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV------GRKPYANPRN 218 ++ PE++EVRGEVY+ ++DF ALN+ G K + NPRN Sbjct: 208 VRFALGLPGGETMTSWPPEVLEVRGEVYMRRDDFEALNERQREKIAAGAKGEKTFINPRN 267 Query: 219 AASGILRRLNPTDI-TRYLNFFVHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQAN 276 A+G +R+L+P R L+F+ +GLG+ +++ +G PV Sbjct: 268 TAAGAVRQLDPAMAAQRPLSFYAYGLGEARGWTLPATHGQVMDAFVAMGLPVCEHRALGA 327 Query: 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAS 336 +V ++ M ++R +LP+DIDG+VYKV+ +LQ+QLG ++R PRW ++HK+ ++ Sbjct: 328 GAEALVDFHARMGALRDSLPFDIDGVVYKVNSLALQQQLGFKSREPRWAVAHKYPAQEML 387 Query: 337 TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIR 396 T + I++Q+GRTG LTPVA+L PV +GG +TNATLHNE + +D+R Sbjct: 388 TTVQAIEVQVGRTGKLTPVAKLAPVFVGGVTVTNATLHNELEARR-----------KDVR 436 Query: 397 VGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456 VGD V+V+RAG+VIP+VV ++ ++R P A F+ P+ CP+C S VR+ A H Sbjct: 437 VGDTVIVRRAGDVIPEVVGVLPDKRPPGAPEFTMPTSCPVCGSAAVREEGE------ADH 490 Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516 RCTGGL CSAQ+ + L HF R A +IEGLG + +D E ++ D++ L Sbjct: 491 RCTGGLFCSAQRKQALLHFAQRRAMDIEGLGDKLVDQLVDGE----VVKTLPDLYRL--- 543 Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576 T + + + S N+ D++ K + +L RF++ LGIRHVG A+ LA+++ Sbjct: 544 ---GLTSLAALERMAEKSAQNIVDALQKSKQTTLPRFLYGLGIRHVGESTAKDLARHFGQ 600 Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636 +L+ P VG ++AQ+I F++ N VE L Sbjct: 601 LDAIMDA----------GVEALMEAPDVGPVVAQSIRTFFEQAHNREVVEQLRACGVQWA 650 Query: 637 GRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695 + + + V TGTL + R +A+E + GA V+ +S+KT ++ G+ G Sbjct: 651 EGEPAPRALLPLAGQTFVLTGTLPTLSREEAKEMLEAAGAKVAGSVSKKTSYVVAGEEAG 710 Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719 SKL+KA++LGV +++E + LL+ Sbjct: 711 SKLDKARELGVPVIDEAKMQALLK 734 >gi|288801242|ref|ZP_06406697.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 299 str. F0039] gi|288331853|gb|EFC70336.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 299 str. F0039] Length = 666 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 225/712 (31%), Positives = 360/712 (50%), Gaps = 50/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ EQ + + L +E+ H+ YY + P I D +DAL ++ +A P+ D Sbjct: 1 MTTEQ--ERIIELRKELHQHNYNYYVLNAPQIDDFTFDALLHELQSLENAHPE---MYDA 55 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++G ++ S +V H P LSL +N +++ F + +F E Sbjct: 56 NSPTQRVGSDLQESFEQVVHVYPMLSLSNTYNKQEVADFYNTVSKFLN---GEEFEICCE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 K DG I++RYE GK V A RGDG G+DV+A ++ I TIP VL N P + E+RGE Sbjct: 113 LKYDGLSISLRYEDGKLVRAVTRGDGTRGDDVTANVKTIKTIPLVLQGNDYPAVFEMRGE 172 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 V + F LN+E +ANPRNAASG L+ LNP + + +I Sbjct: 173 VLMPWKVFDKLNEERRQQEEPLFANPRNAASGTLKSLNPVLVAKRSLDAYLYYLLGEDIN 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 G +E L+ + G + G+R+ ++ I ++ + R LP DG+V KV+ Sbjct: 233 IDGHFERLEAAKRWGVKIGEGMRKVSSLEDIYAFIDYWDVERKNLPVATDGIVLKVNSLK 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+ +G A++PRW I++KF ++ T+L + Q+GRTG +TPVA +EPV + G ++ Sbjct: 293 QQQSMGFTAKNPRWAIAYKFKAERELTKLESVSYQVGRTGTITPVANMEPVLLAGTVVKR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATL+NED+IK D+ +GD V V++ GE+IPK+V + +++R QP F Sbjct: 353 ATLNNEDFIKSF-----------DLHIGDYVYVEKGGEIIPKIVGVELSKRTEGMQPIEF 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 CP C +++VR AA+ C + C Q +++HF++R A NI+ LG + Sbjct: 402 IKTCPECGTQLVRYEG------QAAYYCPNDMGCPPQIKGKIEHFIARKAMNIDSLGPET 455 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D ++ I+ AD++ L G S + D+I K + + Sbjct: 456 IDSYYNK----GLIKDVADLYCLAIDDINEG-------GAHQKSAKKVIDAIEKSKQVPF 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +R +F+LGIR VG AR LA+ + + L+ V VGDIIA Sbjct: 505 DRVLFALGIRFVGETSARLLARKFNDINSLRNATAA----------QLLEVEGVGDIIAT 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++V F+ + +NI +E L E + +E K +V +G R + + Sbjct: 555 SVVTFFSDEKNIALIERLESYGLQMAMPVMDEGPKGNVLEGKTIVISGIFTHHSRDEYKA 614 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + QLG + +S KT ++ GDN G SKL+KA+ LGVKI++E++FL +++ Sbjct: 615 MIEQLGGKNTGSISAKTSFVLAGDNMGPSKLQKAESLGVKILSEDEFLEMIK 666 >gi|254882009|ref|ZP_05254719.1| polydeoxyribonucleotide synthase [Bacteroides sp. 4_3_47FAA] gi|254834802|gb|EET15111.1| polydeoxyribonucleotide synthase [Bacteroides sp. 4_3_47FAA] Length = 665 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 231/705 (32%), Positives = 356/705 (50%), Gaps = 48/705 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L +E+ H+ YY + P I D E+D L R + P+ D N P ++ Sbjct: 5 ERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G ++N + +V H P LSL ++ ++ +F R+ + + E K DGT Sbjct: 62 GSDINKNFTQVVHKYPMLSLANTYSETEVTEFYDRVKKSL----NEDFEICCEMKYDGTS 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKND 197 I++ YE GK V A RGDG G+DV+ ++ I +IP VL PE E+RGE+ + Sbjct: 118 ISLTYENGKLVRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPETFEIRGEILMPWVV 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F LN E A +ANPRNAASG L+ N + + G YE Sbjct: 178 FEELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPCDGHYEN 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L++ GF +++ R+ T + + R LP DG+V KV+ Q+ LG Sbjct: 238 LKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGF 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+SPRW I++KF +QA TRL + Q+GRTG +TPVA L+P+ + G ++ A+LHN D Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPIQLSGTVVKRASLHNAD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+GL D+ +GD V V++ GE+IPK+V + + R F + CP C Sbjct: 358 IIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKDARIMIGDKVKFITHCPEC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S++VR AA+ CT AC Q +++HF+SR A NI+GLG + +D F++ Sbjct: 407 GSKLVRYEGE------AAYYCTNDAACPPQIKGKIEHFISRRAMNIDGLGPETVDQFYQE 460 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 IR AD++TL T+ I N+ G+ S N+ I + + + ER +F+L Sbjct: 461 ----GLIRDVADLYTL------KTSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFAL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR VG +A+ +AK + S A +LI V +G+ IAQ+I+ ++ Sbjct: 511 GIRFVGETVAKKVAKSFKSMDALADA----------SLDNLIHVDEIGEKIAQSILLYFA 560 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 NP+N +E L E ++ + +V +G R + +E + + G Sbjct: 561 NPKNRDIIERLRVAGVRLEADEEDTSEHTDKLAGESIVISGVFAHHSRDEYKELIEKHGG 620 Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 +S KT I+ GDN G SKLEKAQ+LGV I++EE+FL +++ Sbjct: 621 KNVGSISSKTSFILAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665 >gi|153003607|ref|YP_001377932.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. Fw109-5] gi|166215389|sp|A7H8A2|DNLJ_ANADF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|152027180|gb|ABS24948.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. Fw109-5] Length = 699 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 236/730 (32%), Positives = 367/730 (50%), Gaps = 58/730 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + A + L I D YY +P++ D+EYD L R I A P+LA S + Sbjct: 6 DRDSAETRAAELRARILDADHAYYVLDRPVLADAEYDRLVRELAEIEAAHPELATS---D 62 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++ G + +V H P LSL I + +L +F R++R D + + EP Sbjct: 63 SPTQRVSGAPSERFERVVHREPMLSLGNIQSDGELDEFDARVHRLLGLAGDVQVGYVAEP 122 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRA------IPTIPRVLSLNIPEIIE 186 K+DG + + YE G+ V + RGDG +GEDV+A +R +P L+ +P +E Sbjct: 123 KLDGLAVELVYEGGRLVQGSTRGDGVNGEDVTANLRTVGRTRANRGVPERLAGEVPPRVE 182 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH---- 241 VRGEV + K F A+N +++ G +P+ANPRNAA+G LR+L+ R L+F + Sbjct: 183 VRGEVLLFKEHFEAMNRQILRAGDEPFANPRNAAAGSLRQLDWRVTARRPLSFIAYEALV 242 Query: 242 -----GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296 G + + E L+ + GF N + + +Y + M R LP Sbjct: 243 PGAEPGGARAGPWAWRTHAEKLEALARWGFETNAENERCEGIAAVKAYRDRMAERRFALP 302 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 YD DG+V KVD+ +++LG ++ PRW ++ K+ ++ +TR+ I +GRTGILTPV Sbjct: 303 YDTDGVVVKVDDLDWRRRLGAASKFPRWAVAFKYPPQEEATRIRRIWASVGRTGILTPVV 362 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 EPV + GA+++ ATLHNED ++ +D+ GD +LV+RAGEVIP+VV Sbjct: 363 DFEPVRLSGAMVSRATLHNEDEMRR-----------KDVLEGDWILVRRAGEVIPEVVMP 411 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 + R + +PF+FP+ CPIC ++VVR+ K +RCTG AC AQ + RL HF Sbjct: 412 LKERRTGEERPFAFPAECPICGAKVVREEGEK------VYRCTGA-ACPAQLVGRLTHFA 464 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF------ 530 R A +I+GLG + + ++ AD++ + Sbjct: 465 QRRAMDIDGLGDKLALGLVER----GLVKDFADLYAVPFPAWQELFSRPRKEERDAKAEL 520 Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 S N+ D++ + + +L R +F+LGI VG A +LA+++ F Sbjct: 521 PQKSAQNMVDALERSKATTLRRLLFALGIPQVGEATAATLARHFGELARFMDASE----- 575 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650 +L+ V VG A+ I + + P+N VE LL + K Sbjct: 576 -----DALLAVRDVGPETAREIRAWTEEPQNRRVVERLLAAGVR-PAPETVDAGGPFAGK 629 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TG L + R A+ + + G VS +SRKTD+++ G GSKLEKAQ LGV+++ Sbjct: 630 TVVLTGGLAALSRDDAKAEIERRGGKVSGSVSRKTDLVVAGAEAGSKLEKAQALGVRVVG 689 Query: 711 EEQFLFLLQQ 720 EE+FL +L++ Sbjct: 690 EEEFLRMLEE 699 >gi|158334366|ref|YP_001515538.1| NAD-dependent DNA ligase LigA [Acaryochloris marina MBIC11017] gi|190359221|sp|B0C308|DNLJ_ACAM1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|158304607|gb|ABW26224.1| DNA ligase, NAD-dependent [Acaryochloris marina MBIC11017] Length = 675 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 211/709 (29%), Positives = 341/709 (48%), Gaps = 49/709 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L Q + YY P++ D+ YD L + +P L P+ P + Sbjct: 9 QARVQELRQLLQKASYAYYGLDAPLMEDAVYDQLYHELVDLEAQYPQLI---TPDSPTQR 65 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G V H IP SLE ++ D+ + R ++ + E KIDG+ Sbjct: 66 VGERPATQFVSVQHRIPLYSLENAFDRGDMDTWDERWHKLVPNLSQEPG-YVTELKIDGS 124 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKN 196 + + YE G V RGDG GE+++ +R I +IP + PE +EVRGE ++ Sbjct: 125 ALALTYENGLLVRGTTRGDGTKGEEITQNVRTIRSIPLRLNIEHPPEWLEVRGEAFLGLQ 184 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF----A 251 F +N + I G +ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 185 VFDQINRDRIQAGEAEFANPRNAAAGTLRQLDSKVVAERKLDFFAYTIHISGPTDDLALP 244 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + Q++ L+ ++ LGF VN RQ + + +YY++ R LPY DG+V K+D + Sbjct: 245 QTQWQALETLKQLGFRVNPNRRQCESLAEVQTYYDDWSLKRLDLPYLTDGVVIKLDNLGV 304 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG + PRW I+ K+ ++A+TR+ I + +GRTG LTPVA +PV + G ++ A Sbjct: 305 QDELGFTQKFPRWAIAWKYPPEEAATRIEQITVNVGRTGALTPVAEFKPVQLAGTTVSRA 364 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I L DI +GD V+V++AGE+IP+V+ ++ R AQP+ P Sbjct: 365 TLHNRDRISEL-----------DIHIGDTVVVRKAGEIIPEVLRVLPELRPAGAQPYQMP 413 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C V+ A RC +C A L H+VSR A +I+GLG++ + Sbjct: 414 TACPSCGQPAVQLETE------AVTRCVNA-SCPAILRGSLIHWVSRGALDIDGLGEKIV 466 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 S+ ++ AD++ L + + G + +I + Sbjct: 467 GQLTDSQ----MVQSVADLYELNEDKLMD------LDRMGTKLARKIVSAIATSKQQPWH 516 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R ++ LGIRHVG+ A+ L + Y + D + + +G IAQ+ Sbjct: 517 RVLYGLGIRHVGSVNAQLLTENYPTVDALMA----------VDGDKIATIHGIGPEIAQS 566 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYV 670 + E++Q P N ++ L ++ + K V TGTL ++R +A++ + Sbjct: 567 VYEWFQTPTNQTLIQRLQSAGLQFEAIVSESTQPQTLSGKTFVITGTLPTLKRDQAKQMI 626 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G V+ +S+ T ++VG + GSKL KAQ LG+ ++E L LLQ Sbjct: 627 QDAGGKVTGSVSKNTSYVVVGADAGSKLTKAQSLGINQLSEADLLALLQ 675 >gi|87308785|ref|ZP_01090924.1| DNA ligase [Blastopirellula marina DSM 3645] gi|87288496|gb|EAQ80391.1| DNA ligase [Blastopirellula marina DSM 3645] Length = 679 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 223/714 (31%), Positives = 369/714 (51%), Gaps = 51/714 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++E+ L EI HD YY +K I D EYD L R + P L P+ Sbjct: 1 MAAVQEEIDHLRAEIRRHDRMYYVEAKTEISDLEYDQLLNRLKHLEAENPQLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +IG + L +V H +P LS++ +++E+L+ + RI + + I + +E K Sbjct: 58 PTQRIGDQPVEHLNQVAHRVPMLSIDNTYSLEELKAYGERIQKLL---PEEKIEWVVELK 114 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 IDG ++ YE G+ V RG+G G+D++ IR I IP L+ + P ++EVRGE+Y Sbjct: 115 IDGVAASLLYEAGRLVRGVTRGNGQVGDDITHNIRTIKDIPLQLAGDDVPPVLEVRGEIY 174 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251 ++ ++ +N + A G Y N RN +G +R L+P R L F HG+G + + Sbjct: 175 MTNDELSRINKRLAAAGEALYKNTRNVTAGSIRLLDPRICAERNLRMFTHGVGYAEGLNS 234 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + + L +++ G V F V++ + LP+++DGLV KV+ F Sbjct: 235 ESHIDFLNELKQYGLSPTPKVEAFADFDAAVAHCETLIETLQDLPFEVDGLVLKVNRFEQ 294 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +++LG +SPRW+I++KF + +A T+L DI +Q+G+TG +TP+A LEPV + G ++ + Sbjct: 295 RERLGSTTKSPRWIIAYKFEKYEAITKLNDIRVQVGKTGTITPIAELEPVELAGTTVSRS 354 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHN + I+ L DIR+GD V+V++AG++IP +V + ++ER + F FP Sbjct: 355 SLHNAEQIERL-----------DIRIGDVVVVEKAGKIIPHIVRVEMHERKTELPKFEFP 403 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CPIC + +V+D RC C AQ ER+ +F SR+A ++EGLG + + Sbjct: 404 TQCPICHTTLVKDEG------GVYIRCPNRETCPAQLKERIGYFASRNAMDVEGLGDKLV 457 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 D E ++ DI+ L ++ + G S NL SI ++ L Sbjct: 458 DQLVVDE----LVKSYGDIYRLTVE------ELAQLERMGKKSSENLIASIAASKDRGLA 507 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R + L IRHVG +A+ LA+++++ + V +G IIA + Sbjct: 508 RLLNGLSIRHVGNRVAQLLARHFVTVDALLSASE----------EEIAAVNEIGPIIAAS 557 Query: 612 IVEFYQNPRNICAVEALLKEV------SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ + +E L + P + ++ + K LV TGTL K R + Sbjct: 558 VHHFFASEFGQQTIEDLRQLGLKLTEDVPDVVASDETGGGPLTGKTLVVTGTLVKYGRDE 617 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 QE + + G ++ +S+KTD ++ G+ GSKL KA+QLGVK+++E +F LL Sbjct: 618 IQELIEKHGGKATSSVSKKTDYVVAGEKAGSKLAKARQLGVKVLSEAEFEVLLA 671 >gi|254465633|ref|ZP_05079044.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium Y4I] gi|206686541|gb|EDZ47023.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium Y4I] Length = 750 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 298/763 (39%), Positives = 440/763 (57%), Gaps = 59/763 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + + AL+ E AR E +LE ++ D Y+Q P I D+EYD+LK+R A+A Sbjct: 1 MAENSEKDVTALTAEDARAEFLALEDQLRAADLAYHQADAPEISDAEYDSLKQRYRALAE 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 AFPDLA + L+ +G K+TH++ LSL + ED+ F + ++ Sbjct: 61 AFPDLADAATH---LDAVGAPAASGFGKITHAVRMLSLGNAFAEEDVTDFDRSVRKYLGL 117 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 + ++ +T EPKIDG +++RYE+GK V AA RGDG GE+V+A R I IP+ L+ Sbjct: 118 GGEAALGYTAEPKIDGLSLSLRYEQGKLVQAATRGDGSVGENVTANARTISDIPQHLTGA 177 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 PE++EVRGEVY+S DF ALN G K +ANPRNAA+G LR+L+ R L FF Sbjct: 178 -PEVLEVRGEVYMSHADFEALNARHAERGGKIFANPRNAAAGSLRQLDAEITRARPLRFF 236 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ S A+ Q E +++++ LGF N R + ++ +Y ++ R+TL YDI Sbjct: 237 AYSWGELSAPLAETQMEAIERLQSLGFQTNPLTRLCTSVADMIDHYRSIEEQRATLGYDI 296 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKV++ +LQ +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL Sbjct: 297 DGVVYKVNDLALQGRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLT 356 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG +++NATLHNEDYI+G D+ G+ +RGG+DIR+GD V + RAG+VIPKV D+ ++ Sbjct: 357 PVTVGGVVVSNATLHNEDYIQGRDSKGEEIRGGKDIRIGDWVQIYRAGDVIPKVADVDLS 416 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R A+P+ FP CP C S R+ A RC+GGL C AQ +E+LKHFVSR Sbjct: 417 KRPQHAEPYQFPHTCPECGSPAEREEG------DAVRRCSGGLICPAQAVEKLKHFVSRA 470 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+IEGLG +Q++ F I+ PADIF LQ + +++N G+G+ S NL+ Sbjct: 471 AFDIEGLGAKQVEQFHSD----GWIKEPADIFDLQANYGSGLQQLKNREGWGEKSADNLF 526 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ----------------- 582 +I ++R I L + IF+LGIRH G R LA +Y +Q A Sbjct: 527 AAIEEKRTIPLAKLIFALGIRHAGEVAGRDLALHYRDWQGMAAALDAARPAALAHRAADE 586 Query: 583 --------------------------EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 + A W LI V +G ++ ++ + + Sbjct: 587 AEEAERQSAAEEGRRARISETRAAAIAACEVPAEAASAWADLIGVDGIGAVLGLSLSDAF 646 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 NP A++ L+ +++ + S + K +VFTGTL+K+ R +A+ LGA Sbjct: 647 ANPEERAAIDRLVAKLTV-VPPDAPAADSPVAGKTVVFTGTLEKMTRAEAKARAEALGAK 705 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 VS +S+KTDI++ G GSK +KA +LG++ ++E+ +L L+ Sbjct: 706 VSGSVSKKTDILVAGPGAGSKAKKAAELGIQTLDEDGWLELIA 748 >gi|313893283|ref|ZP_07826858.1| DNA ligase (NAD+) [Veillonella sp. oral taxon 158 str. F0412] gi|313442179|gb|EFR60596.1| DNA ligase (NAD+) [Veillonella sp. oral taxon 158 str. F0412] Length = 667 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 230/702 (32%), Positives = 367/702 (52%), Gaps = 46/702 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L+QE+++ YY P + D EYD R + A P+ P+ P + Sbjct: 4 KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIV---PSSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++ S KV H P LSL ++N +++R F +R+ + + +E KIDG Sbjct: 61 VGMKVEGSFEKVVHGRPMLSLSNVFNADEVRAFASRVEKELG---HKPSAYVVELKIDGL 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G FV A RGDG GEDV+A +R I +IP L N PE IEVRGE Y+ ++ Sbjct: 118 AVNLHYENGMFVRAVTRGDGRVGEDVTANVRTIKSIPLYL-ENAPEFIEVRGEAYMPHSE 176 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N+E G + NPRNAA+G LR+ +P +R L FF + +G Q E Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSEEGASIHSQEE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L+ + F VN R T ++ N + R LPYD DG+V KV+ F Q+ LG Sbjct: 237 LLKSLENFKFSVNPHYRVCQTIDDVIETINYWEEKRHDLPYDTDGMVIKVNSFDDQEALG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ P+W ++K+ ++ T L DI I +GRTG+LTP LE V + G ++ TLHN+ Sbjct: 297 STAKDPKWATAYKYPPEEVETILKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQ 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+I +DIR+GD V++ +A E+IP+V+ ++ +R PF+ P+ CP+ Sbjct: 357 DFI-----------NEKDIRIGDHVIIHKAAEIIPEVIRVVPEKRTGSEVPFTIPNTCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C+S VR AA RCT C A + E++ HF SRDA NI+GLG ++ Sbjct: 406 CESPTVRREGE------AAVRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 ++ I D++ L Q + G S NL +I ++ L+R ++ Sbjct: 459 NK----LIANVVDLYHLTVDQLVTM------DRMGKKSAENLVKAIGDSKSRGLDRVLYG 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR +G++ A ++A S + F L+ V +G +A +IVE+ Sbjct: 509 LGIRLIGSKAAATIANVVQSMERFMTITK----------EELVAVEEIGPTMADSIVEYR 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 Q+P + +E L + + ++++ + +V TG L+ + R +A + + GA Sbjct: 559 QDPAHAAIIEGLTQAGLKMTVDVVEAAGNQMDGEIVVLTGKLEIMGRSEAGKILEAHGAK 618 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 V+ +S+KT +++ G++ GSKL KA +LG+++MNEE+F+ LL Sbjct: 619 VTGSVSKKTTLVVAGEDSGSKLTKANELGIRVMNEEEFVELL 660 >gi|282899989|ref|ZP_06307949.1| NAD-dependent DNA ligase [Cylindrospermopsis raciborskii CS-505] gi|281195087|gb|EFA70024.1| NAD-dependent DNA ligase [Cylindrospermopsis raciborskii CS-505] Length = 690 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 227/712 (31%), Positives = 360/712 (50%), Gaps = 53/712 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L + + YY PI+ D+ YD L R + +P+L + + P ++ Sbjct: 12 QRVEELRKLLQQASYAYYVLDSPIMEDTIYDRLYRELQELEKKYPNLVTT---DSPTQRV 68 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NSIFFTLEPKIDGT 137 G V H+IP SLE +N+E+L+ + R R + + E KIDG Sbjct: 69 GERPATHFSSVRHNIPLYSLENAFNVEELQSWNQRWIRHLPTPHSLTEVEYVAELKIDGA 128 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE---VRGEVYIS 194 + + Y+ G V A RGDG +GED++ +R I +IP L+ + E+IE VRGEV++ Sbjct: 129 ALALTYQNGVLVRGATRGDGITGEDITPNVRTIRSIPLRLNFDGIELIEKVEVRGEVFLP 188 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL---GKTSEIF 250 F +N + G + +ANPRNA +G LR+L+P R L+FF + L G Sbjct: 189 LEVFKQINQKRQKAGEQLFANPRNAVAGTLRQLDPRVVAQRQLDFFAYTLHIPGLDDRSI 248 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A Q+E LQ ++ LGF V+ + ++ + YY + R PY DG+V K++ F Sbjct: 249 ANTQWESLQLLQKLGFRVDVNHKLCSSVDEVAQYYQYWNTERLNSPYMTDGVVVKLNAFK 308 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG + PRW I+ K+A ++A TR+ +I + +GRTG LTP+A + PV + G ++ Sbjct: 309 LQEQLGFTQKFPRWAIALKYAAEEAPTRVENIMVNVGRTGALTPLAEMRPVQLAGTTVSR 368 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D ++ L DIR+GD V+V++AGE+IP+VV +I R D +PF Sbjct: 369 ATLHNSDRLREL-----------DIRIGDTVIVRKAGEIIPEVVRVIKELRPNDTEPFIM 417 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C VVR+L RC +C A ++H+VSRDA +I+G+G++ Sbjct: 418 PTNCPVCGQPVVRELGE------VVTRCVNA-SCPAILKGEIEHWVSRDALDIKGIGEKL 470 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + + AD++ L Q + G S L I + +N Sbjct: 471 VHQLVDK----GLVHSVADLYNLTEEQLCG------LERMGKRSAEKLVQVIRESKNQPW 520 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R ++ LGIRHVG+ A+ L++ + + A + + V +G IAQ Sbjct: 521 SRVLYGLGIRHVGSVNAQLLSEKFTTVDKLASAKQS----------DIEGVYGIGVEIAQ 570 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSE-IENKKLVFTGTLQKIQRHKA 666 ++ +++ N + L H + + I K V TGTL ++R +A Sbjct: 571 SVYQWFHISANQNLIIRLETIGIQLATGKSVHARTEPNPQIAGKTFVITGTLPTLKRDEA 630 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + + G V+ +S+KTD I+VG + GSKLEKAQ LG+K ++E L +L Sbjct: 631 KAMIQKAGGKVTDTVSKKTDFIVVGADAGSKLEKAQSLGIKQLDEANLLEML 682 >gi|53713694|ref|YP_099686.1| DNA ligase [Bacteroides fragilis YCH46] gi|81382396|sp|Q64TM7|DNLJ_BACFR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|52216559|dbj|BAD49152.1| DNA ligase [Bacteroides fragilis YCH46] Length = 665 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 223/706 (31%), Positives = 349/706 (49%), Gaps = 48/706 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++++ L ++ H+ YY + P I D E+D L R + P+ D N P Sbjct: 3 VKEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEYK---DENSPTM 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G ++N + +V H P LSL ++ ++ F R+ + + E K DG Sbjct: 60 RVGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRVRKAL----NEDFEICCEMKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195 T I++ YE GK + A RGDG G+DV+ ++ I +IP VL N PE+ E+RGE+ + Sbjct: 116 TSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPEVFEIRGEILMPW 175 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 F ALN E A +ANPRNAASG L+ N + + G Y Sbjct: 176 EVFEALNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPTDGHY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ+ GF ++ +R+ T + + N R L DG+V KV+ Q+ L Sbjct: 236 ENLQEAAKWGFKISPLMRKCQTLQEVFDFINYWDVERKNLNVATDGIVLKVNSLKQQRNL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+GL D+ +GD V V++ GE+IPK+ + + R + F + CP Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDTSVRFMIGEKVKFITHCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S+++R AAH C AC Q +++HF+SR A NI+GLG + +D F+ Sbjct: 405 ECGSKLIRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + I AD++ L + GD S N+ I + + + ER IF Sbjct: 459 R----LGLIHDTADLYRLTTDDIRG------LDRMGDKSAENIIKGIMQSKEVPFERVIF 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG +A+ +AK + + D +LI + +G+ IA++I+ + Sbjct: 509 ALGIRFVGETVAKKIAKSFKDIEELENA----------DLETLINIDEIGEKIARSILNY 558 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + N N V+ L E ++ + +V +G R + ++ + + Sbjct: 559 FANESNRKLVDRLKTAGLQLYRPEEDLSGHTDKLAGQSIVISGVFTHHSRDEYKDLIEKH 618 Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G +S KT I+ GDN G +KLEKA +LG+KIMNEE+FL L+ Sbjct: 619 GGKNVGSISSKTSFILAGDNMGPAKLEKASKLGIKIMNEEEFLKLI 664 >gi|289435095|ref|YP_003464967.1| DNA ligase, NAD-dependent [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171339|emb|CBH27881.1| DNA ligase, NAD-dependent [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 671 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 245/711 (34%), Positives = 369/711 (51%), Gaps = 53/711 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K L + + YY P + D+EYD + I A P+ P P + Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLQIEAAHPEWV---TPESPSKR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ KV H P LSL +N DL F RI K I + E KIDG Sbjct: 61 VGGEVLEGFQKVAHDTPMLSLANAFNKGDLADFDRRIRD----KVGEDIAYMCELKIDGL 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 ++++YEKGK+ A RGDG +GED++A +R I +IP L + IEVRGE ++ K Sbjct: 117 AVSLQYEKGKYKQGATRGDGTTGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 174 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+ G+ +ANPRNAA+G LR+L+ +R L+ F++ + E+ + Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVTTHSD 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R + +Y +E R+ L YDIDG+V K+++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCANLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNDLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 TTAKSPRWSIAYKFPAEEVPTKLLDIELNIGRTGVVTPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D + +DIR+GD VL+K+AG++IP+V+ I ER + +PF P CP Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEERTGEEEPFHMPKNCPT 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CGSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFT 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L + K+ + G+ SVTNL SI + + SLE+ +F Sbjct: 457 H----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEQSKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N D +L + +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAIHFETMDNLKLA----------DKETLTSINDIGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 N ++ L + K K +V TG L+++ R+ A+ + Sbjct: 557 ANEEVHDLLDELKRANVNMTYTGPKLENMSEEELIFAGKTVVLTGKLEQLTRNDAKSLIE 616 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LG VS +S+KTD+++ G + GSKL KA++L + I +E + L Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSENDLIEYLPDEG 667 >gi|227540068|ref|ZP_03970117.1| DNA ligase (NAD(+)) [Sphingobacterium spiritivorum ATCC 33300] gi|227240084|gb|EEI90099.1| DNA ligase (NAD(+)) [Sphingobacterium spiritivorum ATCC 33300] Length = 673 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 215/714 (30%), Positives = 370/714 (51%), Gaps = 48/714 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + +++++ L QE+++++ YY ++ +I D ++D + +A+ +P A DP Sbjct: 1 MSAVEIQEKIAQLTQELNHYNYQYYVLAQSLISDYDFDQKLKELEALESQYPQFA---DP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++GG++ V H P LSL ++ E+LR F R+ + + + E Sbjct: 58 NSPTRRVGGDITSRFNTVKHRWPMLSLGNTYSQEELRDFDQRVRKIIG----DDFEYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 K DG I++ Y+ GK V RGDG G++V+A +R I +IP + + + PE E+RGE Sbjct: 114 LKFDGLSISLTYKDGKLVQGVTRGDGTQGDEVTANVRTIRSIPLTLKTNDYPEEFEIRGE 173 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NFFVHGLGKTSE 248 +++ K+ FL LN E G + YANPRN A+G ++ + ++ R F Sbjct: 174 IFMHKSAFLRLNKEREENGDQIYANPRNFAAGTIKLQDSAEVARRPLDCFLYFLYMDNRR 233 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 +E L+ +R GF V + R + + S+ N + R L Y+IDG+V KV++ Sbjct: 234 KHFSTHWESLEAVRKWGFHVCDHTRLCSNIDDVFSFINYWDTERHNLSYEIDGIVIKVND 293 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 ++ Q++LG A++PRW S+KF ++ T L I Q+GRTG +TPVA L+PV++ G + Sbjct: 294 YAQQEELGFTAKNPRWATSYKFKAERVETILKSISYQVGRTGAVTPVANLQPVSLAGTTV 353 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A+LHN + I L D+ D V V++ GE+IPKV+ + +R PDA PF Sbjct: 354 KRASLHNANEIVRL-----------DLHEQDTVYVEKGGEIIPKVIAANLEKRKPDALPF 402 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 +P+ CP CQ+ +VR+ A H C C Q + +++HF+ R +IEG+G Sbjct: 403 HYPTHCPECQTLLVREEGE------AVHYCPNEDGCPPQIIGKMQHFIGRKMMDIEGMGN 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ FFK IR DI++L+ ++ +++ + FG S+ N+ I K + Sbjct: 457 ETIETFFKK----GLIRNVVDIYSLKEHEE----ELQQMERFGQKSIDNMLKGIEKSKEK 508 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 E+ +F+LGIRHVG IA+ LA Y+ + AQ + V +G I Sbjct: 509 PFEKVLFALGIRHVGETIAKKLALYFKNIDALAQA----------SVEEIASVQDIGGRI 558 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKA 666 A+++ ++ P + ++ L ++ + + +E K + +G R + Sbjct: 559 AESVHQYLNTPIHQNQIQKLKDYGLQFEIEEKEVILAGNGLEGKTFLISGVFADFSREEL 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + G + + +S K + ++ GD G SKL KA++L V I+NE++ L L+ Sbjct: 619 TALIESHGGKMVSSISAKLNYLVAGDKMGPSKLAKAEKLQVPIINEQELLVLIN 672 >gi|193213809|ref|YP_001995008.1| NAD-dependentDNA ligase [Chloroherpeton thalassium ATCC 35110] gi|254781288|sp|B3QSH0|DNLJ_CHLT3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|193087286|gb|ACF12561.1| DNA ligase, NAD-dependent [Chloroherpeton thalassium ATCC 35110] Length = 684 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 219/721 (30%), Positives = 363/721 (50%), Gaps = 55/721 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ +A ++ +L +EI+ H+ YY +KP I D ++DAL R + +PDL P Sbjct: 1 MNKSEAEAKIRALRREINEHNYNYYNLAKPKISDYDFDALLRTLAELEAKYPDLV---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GGE+ + V H LSL +N+ +L F+ R+ + + + + FT E Sbjct: 58 DSPSQRVGGEVTKNFPIVRHKTRMLSLSNTYNLGELGDFLARVAKSLESEGVQAYDFTAE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP------------RVLSL 179 K DG +++ Y G V A RGDG G++++A ++ + TIP Sbjct: 118 LKYDGVAVSLIYRDGLLVQGATRGDGSQGDEITANLKTVRTIPLRLRAPASGSAFDTEKW 177 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFF 239 N IEVRGEV+++K DF +N E + +ANPRNA +G L++ + ++ + Sbjct: 178 NGSGDIEVRGEVFMTKADFEKINAERDESEQ--FANPRNATAGTLKQQDSREVAKRRLTM 235 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 V E L+K+ LGF R + I ++ +E ++ R L Y+I Sbjct: 236 VAYYLDGRPFADLSHGERLEKLAELGFYTGEAHRTCRSLQDIQAFLDEWENKRDALAYEI 295 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG V K++ Q+ LG ++SPRW I++K+A ++A T L ++ Q+GRTG +TPVA L+ Sbjct: 296 DGAVIKLNNVRYQELLGATSKSPRWAIAYKYAARRAETVLENVVFQVGRTGAITPVAELQ 355 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G++I+ +TLHN D I+ L D+ +GDRV+++++G+VIPKVV ++ Sbjct: 356 PVKLSGSVISRSTLHNLDEIRRL-----------DLHIGDRVIIEKSGDVIPKVVGVVAE 404 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R P+A+ S CP C + + N + C C AQ+ RL HF SR Sbjct: 405 KRPPEARTIEPLSTCPSCGTPLEHPENE------VIYYCPNEFGCPAQRKARLVHFASRH 458 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG+ ++ A I P D++ +++ T + + F + S NL Sbjct: 459 AMDIEGLGEAVVEQLL----GAGLIGDPGDLYFIEK------TALLALERFAEKSAQNLL 508 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 + I ++ S ER IF+LGIR+VG A LA + S L Sbjct: 509 NGIEASKSRSFERLIFALGIRYVGRRTASILADRFTSLDTIKSASQA----------ELC 558 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTL 658 +G+ IA+++ F+ P+ + L + + + + +VFTG+L Sbjct: 559 ETEEIGETIAKSVALFFTKPQVQELLGKLERAGLRLASDKKSPDAPQTFAGMTVVFTGSL 618 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R A V + G V++ +S+KT +++ G G KL KA++LGVKI+ E +F +L Sbjct: 619 ENFTRDDAAAKVGERGGKVTSTVSKKTSLVVAGKEAGGKLAKAEKLGVKIVTEAEFQTML 678 Query: 719 Q 719 Sbjct: 679 A 679 >gi|313623350|gb|EFR93577.1| DNA ligase, NAD-dependent [Listeria innocua FSL J1-023] Length = 671 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 364/711 (51%), Gaps = 53/711 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K L + + YY P + D+EYD + I A P+ P P + Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ KV H P LSL +N +DL F RI K + I + E KIDG Sbjct: 61 VGGEVLEGFKKVEHDTPMLSLANAFNRDDLADFDRRIRD----KVGDDISYMCELKIDGL 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 ++++YE GK+ A RGDG GED++A +R I +IP L IEVRGE ++ K Sbjct: 117 AVSLQYENGKYKQGATRGDGTVGEDITANLRTIRSIPMKLKKAYS--IEVRGEAFMPKRS 174 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+ G+ +ANPRNAA+G LR+L+ +R L+ F++ + E+ + Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R + + +Y +E R+ L YDIDG+V K++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCSNLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D + +DIR+GD VL+K+AG++IP+V+ I ER +PF P CP Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEERTGSEKPFHMPKNCPT 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CDSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L + K+ + G+ SVTNL SI + SLE+ +F Sbjct: 457 ----MHLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N D +L + +G+ +A + ++ Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNL----------KIADKETLTSINDIGEKMADSXXTYF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 N +E L + K K +V TG L+K+ R+ A+ + Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLENMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667 >gi|313632855|gb|EFR99806.1| DNA ligase, NAD-dependent [Listeria seeligeri FSL N1-067] Length = 678 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 245/711 (34%), Positives = 370/711 (52%), Gaps = 53/711 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K L + + YY P + D+EYD + I A P+ P P + Sbjct: 11 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLQIEAAHPEWI---TPESPSKR 67 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ KV H P LSL +N +DL F RI K I + E KIDG Sbjct: 68 VGGEVLEGFQKVAHDTPMLSLANAFNKDDLADFDRRIRD----KVGEDIAYMCELKIDGL 123 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 ++++YEKGK+ A RGDG +GED++A +R I +IP L + IEVRGE ++ K Sbjct: 124 AVSLQYEKGKYKQGATRGDGTTGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 181 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+ G+ +ANPRNAA+G LR+L+ +R L+ F++ + E+ + Sbjct: 182 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVTTHSD 241 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R + +Y +E R+ L YDIDG+V K+++ Q+Q+G Sbjct: 242 GLDMLETLGLKVNKERRLCANLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNDLEQQRQMG 301 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+LHNE Sbjct: 302 TTAKSPRWSIAYKFPAEEVPTKLLDIELNIGRTGVVTPTAVLEPVRVAGTTVSRASLHNE 361 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D + +DIR+GD VL+K+AG++IP+V+ I ER + +PF P CP Sbjct: 362 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEERTGEEEPFHMPKNCPT 410 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 411 CGSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFT 463 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L + K+ + G+ SVTNL SI + + SLE+ +F Sbjct: 464 H----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEQSKQNSLEKLLFG 513 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N D +L + +G+ +A +IV ++ Sbjct: 514 LGIRHVGAKAAKSLAIHFETMDNLKLA----------DKETLTSINDIGEKMADSIVTYF 563 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 N ++ L + K K +V TG L+++ R+ A+ + Sbjct: 564 ANEEVHDLLDELKRANVNMTYTGPKLENMSEEELIFAGKTVVLTGKLEQLTRNDAKSLIE 623 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LG VS +S+KTD+++ G + GSKL KA++L + I +E + L Sbjct: 624 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSENDLIEYLPDEG 674 >gi|310826558|ref|YP_003958915.1| DNA ligase [Eubacterium limosum KIST612] gi|308738292|gb|ADO35952.1| DNA ligase [Eubacterium limosum KIST612] Length = 666 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 236/711 (33%), Positives = 371/711 (52%), Gaps = 52/711 (7%) Query: 12 LSIE--QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 ++ E QA ++S L+++I ++ YY P+I D YD + + ++ A+P S Sbjct: 1 MNEELKQAEAKISQLKKQIEENNVRYYDKDAPVIPDYAYDRMMQELISLETAYPQFLTS- 59 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 + P ++GG + + KV ++ P LSL +N DLR F TRI + + + Sbjct: 60 --DSPSQRVGGAPSEAFEKVHYTTPKLSLSNAFNAGDLRDFDTRIRKVC-----PDVAYC 112 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 +E K DG + + YE G V + RGDG +GE+V+ ++ + TIP L+ + +EVRG Sbjct: 113 VEHKFDGLTVVLDYENGLLVRGSTRGDGVTGENVTQNLKTVKTIPLRLTEPM--TLEVRG 170 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EV I K DF LN G +ANPRNAA+G +R+L+P R L+ FV L Sbjct: 171 EVLIYKEDFEELNAAREEQGEPLFANPRNAAAGSIRQLDPKLAAERPLDIFVFNLEYCEN 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVYKVD 307 + E + GF + V+ I++Y EM+ PY+IDG+V KV+ Sbjct: 231 RSFETHKESFDFLTHCGFKTSE-VKLYKDMEDIITYIEEMEHGGREALPYEIDGMVIKVN 289 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +++LG+ ++SPRW I++KF+ +Q T + DI +Q+GRTG LTPVA LEPV + G++ Sbjct: 290 NLAERERLGDTSKSPRWAIAYKFSPEQTVTTVRDITVQVGRTGALTPVAELEPVLLAGSV 349 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 I+ ATLHNEDYI +DIR+GDRV++++AG+VIP+V I +R Sbjct: 350 ISRATLHNEDYI-----------IDKDIRIGDRVVIQKAGDVIPEVDHSIPEDRTGAEVV 398 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F+ P+ CP+C S R A +C C AQ ++ HF SRDA NI+G+G Sbjct: 399 FTMPAHCPVCGSETYRVPGE------AVTKCLNM-DCPAQVFRKIVHFASRDAMNIDGMG 451 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + +E I DI+ + R++ + + G+ SV NL ++I ++ Sbjct: 452 PAVVRQLLDNE----LIHTIVDIYHVSDRRE----DLTGLEKMGEKSVDNLINAIEDSKS 503 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 L + +F+LGI VGA A+ LA ++ S + L + +G Sbjct: 504 RPLSKVVFALGIPLVGANGAKILASHFGSMDALMEASE----------EELTEIYDIGGK 553 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +A IV+F++ N V+ L + + + E+ K V TGTL + R +A+ Sbjct: 554 MAVEIVDFFKTDANRRIVDGLREAGVNMTENTARATA-ELAGKTFVLTGTLPTMGRREAK 612 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 E + GA VS +S+KTD ++ G+NPGSK EKA L V +++EE F ++ Sbjct: 613 EILESHGAKVSGSVSKKTDYVLAGENPGSKAEKAMSLDVPVIDEETFKKMV 663 >gi|93005182|ref|YP_579619.1| DNA ligase, NAD-dependent [Psychrobacter cryohalolentis K5] gi|122989955|sp|Q1QDW8|DNLJ_PSYCK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|92392860|gb|ABE74135.1| DNA ligase, NAD-dependent [Psychrobacter cryohalolentis K5] Length = 691 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 248/722 (34%), Positives = 380/722 (52%), Gaps = 43/722 (5%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K A + + ++ + + H+ YY PI+ DSEYD L+R + Sbjct: 10 SKDINTAKSAANEDAIVAQMRTFIDALKKHNYAYYVLDNPILEDSEYDQLRRSLLELEEE 69 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 +PDL + P+ P+N++G + +VTH IP LSL ++ +DLR F+ R+ Sbjct: 70 YPDLIQ---PDSPINQVGDMPLSAFTQVTHDIPMLSLGNVFEYDDLRDFMRRVNDRLSVA 126 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLN 180 + + +E K+DG ++++Y GKFV A RGDG +GED++ + I +P + + + Sbjct: 127 QQSP-EYEMELKLDGLAVSLKYAYGKFVQAVTRGDGQTGEDITQNAKTIRNLPLWIPAAS 185 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFF 239 E++EVRGEV + K F LN G K +ANPRNAA+G LR+L+P F+ Sbjct: 186 DIELLEVRGEVLMPKAGFERLNRLAEEKGDKTFANPRNAAAGSLRQLDPAIAASRPLAFY 245 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + + + K Q L ++ +GF + V +YY +K R LP++I Sbjct: 246 CYSVNQGLPEHIKTQSAALAWLKTIGF-TVSAVEVVQNPREAQAYYESVKETRGDLPFEI 304 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KV+ +LQ+QLG +R PRW ++KF + TRL I+ Q+GRTG +TPV +LE Sbjct: 305 DGMVIKVNSLALQQQLGFLSREPRWATAYKFPAETVMTRLHAIEWQVGRTGAITPVGKLE 364 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG ++N TLHN I+ L D+R GD V V RAG+VIPKV + + Sbjct: 365 PVKVGGVTVSNVTLHNFGEIQRL-----------DVRAGDMVSVHRAGDVIPKVTRVWTD 413 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R +++P PS CP+C S VV + A RCTGGL C AQQ+E L HFVSR Sbjct: 414 QRPENSEPVKLPSTCPVCDSPVVLPKDE------ALARCTGGLFCPAQQVEALIHFVSRR 467 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +I+GLG L FF+ ++ ADI+ L Q+ ++ + G+ SV N+ Sbjct: 468 AMDIDGLGASWLISFFEH----GLVKTVADIYQLHNHQE----ELITLEKLGEKSVQNIL 519 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I + +L RFI++LGIR VG A++LA+ + L+ Sbjct: 520 SAIEASKQTTLARFIYALGIRGVGETTAQNLAQQFGDLDALMSA----------SIEKLL 569 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTL 658 P VG I A+ +F++ P NI + AL + + ++ + V TG L Sbjct: 570 LTPDVGAITAELTYKFFRAPHNIEVINALREAGVHWDKVEQVASEGLPLDGQTWVITGAL 629 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R +A+ + LGA VS +S KT ++ GD GSK+ KA++LGVK++ EE+FL L+ Sbjct: 630 DSMARDEAKAKLQALGAKVSGSISAKTTALLAGDKAGSKMAKAEKLGVKVVGEEEFLVLV 689 Query: 719 QQ 720 + Sbjct: 690 GE 691 >gi|299139723|ref|ZP_07032896.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX8] gi|298598347|gb|EFI54512.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX8] Length = 723 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 243/762 (31%), Positives = 363/762 (47%), Gaps = 92/762 (12%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 P ALS + +++ +L +++ +H+ YY P + D++YDA + P+L Sbjct: 4 TPSNALSPD---QQIEALREDLRHHEHLYYVLDAPELTDAQYDARMNELRRLETEHPELV 60 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P+ P ++GG+ KV HS P LSL+ +N +LR + R+ + Sbjct: 61 ---TPDSPTQRVGGKPKEGFAKVAHSRPMLSLDNAYNEAELRAWAERVVSGL--PSGEVV 115 Query: 127 FFTLEPKIDGTMITIRYEKG-----KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 F E K+DG + ++Y+ G RG+G GEDV+ +R I ++P + Sbjct: 116 RFVCELKLDGLSLALQYDAGAKHEAVLKTGVTRGNGTIGEDVTTNVRTIRSVPLHIQAAK 175 Query: 182 PE------IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITR 234 EVRGEV + + F +N E A G P ANPRNAA+G +R L P R Sbjct: 176 LAKAGLPQQFEVRGEVVLPQKAFEKMNAEREAAGLAPAANPRNAAAGTIRTLEPNIVAQR 235 Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 L FF + L + E Q LQ +R GF VN R + ++++ NE + +R Sbjct: 236 RLEFFAYFLLREGEPLLAEQSSALQALREAGFLVNKHARTVGSIDEVLAFINEAEPLRDG 295 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 LPY+IDG+V KVD + Q++LG ++PRW I++KF + A TRL D+ Q+GRTG +TP Sbjct: 296 LPYEIDGVVIKVDAIAQQRRLGFTGKAPRWAIAYKFPARAAVTRLDDVLFQVGRTGKVTP 355 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VA L PV IGG +T ATLHN D I L +RVGD V V+R G+VIPK+ Sbjct: 356 VAALAPVFIGGTTVTRATLHNADEIARL-----------GVRVGDFVSVERGGDVIPKIT 404 Query: 415 DIIVNERHP-DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473 +++ + +HP FPS CP+C S +VR RC + C A+ E L Sbjct: 405 EVVEDAKHPRGTSEIIFPSHCPVCGSELVRAEGE------VDWRCINAV-CPARVREELL 457 Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDP--------------------------------- 500 H+ +R NIEGLG+ + + Sbjct: 458 HWAARGVMNIEGLGESMVAQLLGQAEEDSESAEGRSGLQPGLSESVSDEGLQTGLAEPIK 517 Query: 501 ---AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 IR AD+++L R Q + + G+ + L I + + L R +F L Sbjct: 518 TSHEPLIRSIADLYSLTREQLLT------LERVGEKTADALLAEIERSKQAPLARVLFGL 571 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR VG A LA+++ S + + L V VG +AQAIVEF+ Sbjct: 572 GIRFVGERTASLLAEHFGSLDDLMKA----------SAEDLEAVNEVGPRVAQAIVEFFA 621 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 +N VE L V + ++ V + V TGTL + R +A++ + G V Sbjct: 622 EEKNRELVEKLRT-VGLTFTAEKRVVGTTFAGLTFVLTGTLPTLTRDEAKQRIEDAGGKV 680 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 S +S+KT ++ G++ GSKLEKAQQLGV +++E L L+ Sbjct: 681 SGSVSKKTSYVVAGEDAGSKLEKAQQLGVAVLDEAGLLALIA 722 >gi|227543584|ref|ZP_03973633.1| DNA ligase, NAD-dependent [Lactobacillus reuteri CF48-3A] gi|300909387|ref|ZP_07126848.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri SD2112] gi|227186424|gb|EEI66495.1| DNA ligase, NAD-dependent [Lactobacillus reuteri CF48-3A] gi|300893252|gb|EFK86611.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri SD2112] Length = 680 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 238/725 (32%), Positives = 384/725 (52%), Gaps = 50/725 (6%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M ++Q P++ L++++A+ E+ L +++ YY+ P + D YD +R + Sbjct: 1 MSQKQ-TPVKELTLQEAQDEIKPLRAKLTEWGKEYYEQDNPTVEDHVYDRAYQRLVQLEE 59 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP L + P ++GG L KV H IP LS+ +++IE+L F R + Sbjct: 60 QFPQLL---SADSPTQRVGGATESQLTKVRHEIPMLSMGDVFSIEELMDFNQRQQE--NR 114 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 + + LE KIDG +++ YE GK V + RG+G GEDV+A +R I ++P L Sbjct: 115 DVEVEPEYNLELKIDGLSLSLVYENGKLVQGSTRGNGTIGEDVTANVRTIKSVPAELPEP 174 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 + IEVRGE Y+ K F LN + A G +ANPRNAA+G LR+L+P R L+ F Sbjct: 175 LS--IEVRGECYMPKAAFAKLNAKREAEGLPVFANPRNAAAGSLRQLDPKVTAQRELDTF 232 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 ++ + + ++ K Q E L +MR LGF VN R + I Y E + R L Y I Sbjct: 233 IYYVPEYQKLGVKTQAEALDRMRELGFNVNLNNRVVHNREEIEKYIEEYTAQRDKLTYGI 292 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KV++ + LG + PRW I++KF ++ +T + DI +GRTG +TP A ++ Sbjct: 293 DGIVEKVNDLDTEVALGNTVKVPRWEIAYKFPPEEQATIVRDIVWTVGRTGNVTPTAVMD 352 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G ++ A+LHN DY++ +DIR+GD V + +AG++IP++ + + Sbjct: 353 PVQLAGTTVSRASLHNPDYLR-----------EKDIRIGDTVYLHKAGDIIPEISKVDLT 401 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R D+ + P+ CP+C S +V A RC + C AQ E L HF SR+ Sbjct: 402 KRPADSVEYEIPTKCPVCSSELVHLDGE------VALRCINPM-CPAQIKEGLAHFASRN 454 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A NI+GLG + ++ + E I A ++ L Q + + FG+ S NL Sbjct: 455 AMNIDGLGPRIIEQLWDKE----LIHDVAGLYRLNHDQLLT------LDKFGEKSTANLL 504 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 SI+ RN S+ER +F LGIRHVGA+ AR + +++ + + + + Sbjct: 505 TSIDNSRNNSVERLLFGLGIRHVGAKAARIIMEHFGDLDSLMKAND----------DEIS 554 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTG 656 + +G I ++IV ++ N + + ++ L + R N SE +++V TG Sbjct: 555 AISGIGPTIGESIVTYFANQQVVKLIDELREVGVNFAYLGSRSNANPDSEWNGRRVVLTG 614 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 L ++ R +A+ ++ GA V+ +S+KTDI+I G + GSKL KAQ LG+ + NE+QF Sbjct: 615 KLTEMTRGEAKLWLENHGAKVTGSVSKKTDIVIAGADAGSKLTKAQDLGIDVWNEQQFSQ 674 Query: 717 LLQQY 721 +++ Sbjct: 675 AMKEE 679 >gi|160889578|ref|ZP_02070581.1| hypothetical protein BACUNI_02004 [Bacteroides uniformis ATCC 8492] gi|317480069|ref|ZP_07939180.1| DNA ligase [Bacteroides sp. 4_1_36] gi|156861095|gb|EDO54526.1| hypothetical protein BACUNI_02004 [Bacteroides uniformis ATCC 8492] gi|316903746|gb|EFV25589.1| DNA ligase [Bacteroides sp. 4_1_36] Length = 665 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 231/707 (32%), Positives = 359/707 (50%), Gaps = 50/707 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++++ L E+ H+ YY + P I D E+D L R + P+ +D N P Sbjct: 3 VKEKIDQLRAELHQHNYNYYVLNAPEISDKEFDDLMRELQDLEKEHPEY---QDDNSPTM 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G ++N + +V H P LSL ++ ++ F R+ + + E K DG Sbjct: 60 RVGSDLNKNFTQVAHKYPMLSLGNTYSENEVTDFYERVKKAL----NEDFEICCELKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 T I++ YE GK V A RGDG G+DV+ ++ I TIP VL N P+ E+RGE+ + Sbjct: 116 TSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGNYPKSFEIRGEILMPWV 175 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN E A +ANPRNAASG L+ N + E+ G YE Sbjct: 176 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGEELPCDGHYE 235 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 LQ GF + R+A++ + Y N + R LP DG+V KV+ QK LG Sbjct: 236 NLQAAASWGFKTSEHTRKAHSLEEVFEYINYWDTERKNLPVATDGIVLKVNSLRQQKNLG 295 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 FTAKSPRWAIAYKFQAERALTRLNRVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHNA 355 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCP 435 D I+GL D+ +GD V V++ GE+IPK+ + + R + F + CP Sbjct: 356 DIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSMLIGEKVKFITHCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S+++R AAH C AC Q +++HF+SR A NI+GLG + +D F+ Sbjct: 405 ECGSKLIRFEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + I+ AD++ L+ + + G+ S N+ + I + + ER +F Sbjct: 459 R----LGLIKDTADLYQLKTDDIKN------LERMGEKSAENIVNGIAASKEVPFERVLF 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG +A+ +AK + + D L + +G+ IAQ+I+ + Sbjct: 509 ALGIRFVGETVAKKIAKSFTDIEELENA----------DLEKLKNIDEIGEKIAQSIITY 558 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + NP N VE L + R E+++S ++ + +V +G R + +E + + Sbjct: 559 FSNPANRELVERLKSNG-LQLHRTEEDLSGYTDKLAGQSIVISGVFTHHSRDEYKEMIEK 617 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G +S KT I+ G+N G +KLEKAQ+LGVKIM+E++FL LL Sbjct: 618 NGGKNVGSISSKTSFILAGENMGPAKLEKAQKLGVKIMSEDEFLALL 664 >gi|60681965|ref|YP_212109.1| putative DNA ligase [Bacteroides fragilis NCTC 9343] gi|81314971|sp|Q5LCI0|DNLJ_BACFN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|60493399|emb|CAH08185.1| putative DNA ligase [Bacteroides fragilis NCTC 9343] Length = 665 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 223/706 (31%), Positives = 349/706 (49%), Gaps = 48/706 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++++ L ++ H+ YY + P I D E+D L R + P+ D N P Sbjct: 3 VKEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEYK---DENSPTM 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G ++N + +V H P LSL ++ ++ F R+ + + E K DG Sbjct: 60 RVGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRVRKAL----NEDFEICCEMKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195 T I++ YE GK + A RGDG G+DV+ ++ I +IP VL N PE+ E+RGE+ + Sbjct: 116 TSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPEVFEIRGEILMPW 175 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 F ALN E A +ANPRNAASG L+ N + + G Y Sbjct: 176 EVFEALNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPTDGHY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ+ GF ++ +R+ T + + N R L DG+V KV+ Q+ L Sbjct: 236 ENLQEAAKWGFKISPLMRKCQTLQEVFDFINYWDVERKNLNVATDGIVLKVNSLKQQRNL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+GL D+ +GD V V++ GE+IPK+ + + R + F + CP Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDTSVRFMIGEKVKFITHCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S+++R AAH C AC Q +++HF+SR A NI+GLG + +D F+ Sbjct: 405 ECGSKLIRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + I AD++ L + GD S N+ I + + + ER IF Sbjct: 459 R----LGLIHDTADLYQLTTDDIRG------LDRMGDKSAENIIKGIMQSKEVPFERVIF 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG +A+ +AK + + D +LI + +G+ IA++I+ + Sbjct: 509 ALGIRFVGETVAKKIAKSFKDIEELENA----------DLETLINIDEIGEKIARSILNY 558 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + N N V+ L E ++ + +V +G R + ++ + + Sbjct: 559 FANESNRKLVDRLKTAGLQLYRPEEDLSGHTDKLAGQSIVISGVFTHHSRDEYKDLIEKH 618 Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G +S KT I+ GDN G +KLEKA +LG+KIMNEE+FL L+ Sbjct: 619 GGKNVGSISSKTSFILAGDNMGPAKLEKASKLGIKIMNEEEFLKLI 664 >gi|260436246|ref|ZP_05790216.1| DNA ligase, NAD-dependent [Synechococcus sp. WH 8109] gi|260414120|gb|EEX07416.1| DNA ligase, NAD-dependent [Synechococcus sp. WH 8109] Length = 680 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 223/717 (31%), Positives = 352/717 (49%), Gaps = 49/717 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + + L ++ YY P++ D+ YD L R + P L R P+ Sbjct: 1 MADPHERAAELRHLLNRAGHAYYVLDAPVMEDAVYDRLYRELLELEQNDPGLQR---PDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG+ V H + LSL+ +N +DLR + R+ + + +D + E K Sbjct: 58 PTQRVGGDPAEGFTNVEHRVGMLSLDNAFNRDDLRAWHERLLKVLDRPNDTRLPLVGELK 117 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVY 192 IDG + + Y G AA RGDG GE+++A +R I +IP N PE +EVRGE + Sbjct: 118 IDGNALALSYRNGVLERAATRGDGSRGEEITANVRTISSIPLRLQIENPPEWVEVRGEAF 177 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251 I F A+N E G +ANPRNA +G LR+L+P R L+FF + L + Sbjct: 178 IPDATFAAINAEREQRGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPGDAQP 237 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 GQ+ L+ + GF VN I + + + R LPY DG+V K+D L Sbjct: 238 PGQWAALEWLNTAGFRVNPNRELCGELAAIQRFCDHWEQGRHDLPYATDGVVVKLDNLQL 297 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q + G ++PRW I+ K+ ++A TRLL I Q+GRTG +TPVA E V + G ++ A Sbjct: 298 QDEAGFTQKAPRWAIALKYPAEEAPTRLLRIGAQVGRTGAITPVAEFEAVALAGTSVSRA 357 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I L D+ +GD ++V++AGE+IP+VV ++ R DA P P Sbjct: 358 TLHNADRIAEL-----------DLHLGDTIVVRKAGEIIPEVVRVLPELRPSDATPVQLP 406 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C S +VR+ + AA RC +C A L+H+VS+ A +++GLG + + Sbjct: 407 QQCPECGSNLVREGDE------AATRCVNS-SCPAILRGGLRHWVSKSALDVDGLGSKLI 459 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + + + AD++ L S + GD S TNL +++ + Sbjct: 460 EQLVER----GLVGSLADLYRLDAALLAS------LDRMGDKSATNLVEALEASKQQPWH 509 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R ++ LGIRH+G A++LA + S ++ A + + + +G I+ + Sbjct: 510 RQLYGLGIRHIGEVNAKALAAAFFSID-------SLAAAALEAPEQIAELHGIGPEISAS 562 Query: 612 IVEFYQNPRNICAVEALLK-EVSPSIGRHEKNV--------SSEIENKKLVFTGTLQKIQ 662 + ++ + P N ++ L E+S E+ ++ K LV TGTL + Sbjct: 563 LGQWLRTPANQQLLQDLRSVELSLEASASEQEAASQAGADADGVLQGKTLVLTGTLPNLS 622 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +A+ + VS +S+KTD ++ G+ GSKL KA+ LGV +++E LLQ Sbjct: 623 RSEAKALIEAADGKVSGSVSKKTDYLVAGEAAGSKLTKAESLGVTVLSEADLTALLQ 679 >gi|67920947|ref|ZP_00514466.1| NAD-dependent DNA ligase [Crocosphaera watsonii WH 8501] gi|67857064|gb|EAM52304.1| NAD-dependent DNA ligase [Crocosphaera watsonii WH 8501] Length = 670 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 226/697 (32%), Positives = 369/697 (52%), Gaps = 47/697 (6%) Query: 30 YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89 + YY PI+ D+ YD L R D + L S + P ++G + + Sbjct: 15 KANYAYYVLDNPIMEDAVYDQLYRELDTLEKENTHLITS---DSPTQRVGDKPASQFVSL 71 Query: 90 THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149 H+IP SLE +N+E+L+ + R R+ +K++ S + E KIDG+ + + YE G + Sbjct: 72 AHNIPLYSLENAFNLENLQAWQKRWQRYSEKENIESAEYVCELKIDGSALALTYENGLLI 131 Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDFLALNDEMIAV 208 RGDG +GED++ +R I +IP L+ N P IIEVRGE ++ ++F +N + Sbjct: 132 RGVTRGDGTTGEDITQNVRTIRSIPLKLNLENPPPIIEVRGEAFLPLDEFDRINQQREEN 191 Query: 209 GRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268 G +ANPRNAA+G LR+L+P + + F Q+E L ++ GF V Sbjct: 192 GEALFANPRNAAAGTLRQLDPKIVDQRRLQFFAYTLHLETTDINSQWESLNYLQNSGFLV 251 Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 N + + + Y+ + ++ R LPY DG+V K++++SLQK LG + PRW I+ Sbjct: 252 NTHRKLCPSLEEVADYFQQWETERKDLPYMTDGVVVKINDYSLQKVLGFTQKFPRWAIAL 311 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388 K+ ++A T + DI + +GRTG +TP+A +EPV++ G + ATLHN D IK L Sbjct: 312 KYPAEEAPTIVKDIIVNVGRTGAVTPMAVMEPVHLAGTTVQKATLHNSDRIKQL------ 365 Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448 DIRVGD V++++AGE+IP+VV ++ + R P+ Q + PS CP C S + R N Sbjct: 366 -----DIRVGDTVIIRKAGEIIPEVVRVLDDLRPPNTQLYQMPSHCPECDSTLKRPPNE- 419 Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508 A RC L+C A L H+ SRDA +I GLG++ + + + A Sbjct: 420 -----AVTRCMN-LSCGAILRGSLVHWASRDALDIRGLGEKIVILLINN----GLVNSLA 469 Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 D++ L KI N+ G S NL ++I + R ++ LGIR+VG+ A Sbjct: 470 DLYDLTPE------KIANLERMGSKSANNLIEAIEGSKKQPFSRVLYGLGIRYVGSVTAG 523 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 LA+ + S + +Q + L V VG+ IAQ+I++++ +N ++ L Sbjct: 524 LLAENFPSMEQLSQA----------SFSDLSSVYGVGEEIAQSIIDWFSIEKNCDLIQQL 573 Query: 629 LKEVSPSIGRHEKNVS-----SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 K K + + K V TGTL ++R++A+ + + G V++ +S+ Sbjct: 574 EKVGLQLEATKSKTPTVDSPLTPFAGKTFVITGTLPSLKRNEAKALIMEAGGKVTSSVSK 633 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +TD +++G+NPGSKL +A++LG+ ++E +FL L+++ Sbjct: 634 RTDYLLLGENPGSKLTQAEKLGITQLSEAEFLTLVKK 670 >gi|309389839|gb|ADO77719.1| DNA ligase, NAD-dependent [Halanaerobium praevalens DSM 2228] Length = 670 Score = 527 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 231/715 (32%), Positives = 388/715 (54%), Gaps = 48/715 (6%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 L+ E+A K++++L+++I H+ Y+ P I D+E+D L + + FPDL Sbjct: 3 NLNKEKASKKITALKEKIRKHEYKYFVLDDPSISDAEFDQLMQELIKLESEFPDLI---T 59 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++GG + KV HS LSL+ +N EDL +F R+ + + +D + + Sbjct: 60 EDSPTQRVGGAVLDEFKKVKHSTKMLSLDNAFNKEDLIEFDQRVQKNLKGEDYQ---YVV 116 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +RY G F A RG+G GED+S ++ I ++P + +++RGE Sbjct: 117 EHKIDGLSAVMRYNNGTFELGATRGNGEVGEDISNNMKTIRSLPLKIEE--KAEMQLRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEI 249 +Y++K++F LN + + P+ANPRNAA+G +R+L+ L+ ++ L S+ Sbjct: 175 IYLAKSEFKRLNKQRLENDESPFANPRNAAAGSVRQLDSKIAAERSLSILIYDLISHSKR 234 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 K E+ ++ GF +N + A+ ++ + R L ++IDGLV K+++ Sbjct: 235 EFKTHLEVFAYLKKQGFKIN-WYQAASNIESVIEICQDWHQKREKLDFEIDGLVIKINDL 293 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +L+K+LG ARSPRW I++KF +Q +T++ DI+I +GRTG LTP A L+PV + G+ ++ Sbjct: 294 ALRKKLGNTARSPRWAIAYKFPAQQKTTKIKDIEISLGRTGALTPTAILDPVELAGSTVS 353 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHNED IK +DI++GD VLV++AG+VIP+VV +I +R + F Sbjct: 354 RATLHNEDEIKR-----------KDIKIGDIVLVQKAGDVIPEVVKVITEKRDGSEKEFE 402 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP+C V+R A RCT ++C AQ+ E + HFVSR+A NI+G+G Sbjct: 403 MPKNCPVCGGEVIRPEGE------AVSRCTN-ISCPAQRKESILHFVSRNAMNIDGVGPA 455 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ + I AD++ L++ + ++++ G+ S N+ +I + Sbjct: 456 LIEQLLANN----LIEDYADLYFLKQ------SHLKDLERMGEKSSENVIKAIEASKKRE 505 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 R +++LGIRHVG AR LA+ + S L + +G +IA Sbjct: 506 FFRVLYALGIRHVGIGAARILAENFNSIDELKSA----------KIDDLKNISEIGPVIA 555 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +IV F+Q NI + L + + + + ++ K VFTG+L R + ++ Sbjct: 556 DSIVNFFQERHNIDLLSRLKQAGIRLKNKASQENENFLDQLKFVFTGSLNDFTRSEIKDL 615 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 V G + +S KTD +++GDNPGSK +KAQ LG++I+NE +F ++++ ++ Sbjct: 616 VENAGGRAVSSVSSKTDYLVIGDNPGSKYDKAQSLGIEILNESEFKEMIKKKRSS 670 >gi|296046569|gb|ADG86426.1| NAD-dependent DNA ligase [Francisella novicida] Length = 689 Score = 527 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 246/712 (34%), Positives = 389/712 (54%), Gaps = 61/712 (8%) Query: 33 DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHS 92 YY +P + D+EYD L + P+L + P K+GG+ S +VTH Sbjct: 20 HEYYVLDQPSVPDAEYDRLMTALIDLEKTNPELKTI---DSPSQKVGGQALKSFTQVTHQ 76 Query: 93 IPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152 +P LSL+ +++++D F+ R+ D+ +I F EPK+DG +++RYE G+ + AA Sbjct: 77 LPMLSLDNVFSLDDFHAFVKRVKDRLN--DNQAIVFCAEPKLDGLAVSLRYEHGQLIQAA 134 Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGEVYISKNDFLALNDEMIAV 208 RGDG GE+++ IR I +IP L + P+I+EVRGEV++ K F ALN Sbjct: 135 TRGDGSVGENITTNIRTIKSIPLKLMGTPGKDFPDIVEVRGEVFMPKASFDALNTXAKKR 194 Query: 209 GRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK--------------TSEIFAKG 253 G K +ANPRNAA+G LR+L+ R L F+ + LG T++ FA Sbjct: 195 GEKGFANPRNAAAGSLRQLDSKITAKRNLAFYAYSLGFVGKLSDGGAESTDLTNDFFANS 254 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +E L +++ LG P+ VR + ++Y ++ + RS L Y+IDG V KVDE SLQK Sbjct: 255 HHERLCQLKRLGLPMCPEVRLLESEQACDAFYQDILAKRSALSYEIDGTVLKVDEISLQK 314 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG AR+PRW I++KF ++ T + D++ Q+GRTG +TPVARL+PV +GG ++NATL Sbjct: 315 RLGFVARAPRWAIAYKFPAEEELTCVEDVEFQVGRTGAITPVARLKPVFVGGVTVSNATL 374 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN+D I L ++V D V+++RAG+VIP++V +++++R +A FP+ Sbjct: 375 HNQDEITRL-----------GLKVNDFVVIRRAGDVIPQIVSVVLDKRPDNAVDIVFPTS 423 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S V + A RCT GL C+AQ+ E +KHF SR A +++GLG + ++ Sbjct: 424 CPVCDSAVAKPEGE------AVLRCTAGLFCAAQRKEAIKHFASRKAHDVDGLGDKLVEQ 477 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + I AD+F L Q ++ I G S TNL + + + ++ +L +F Sbjct: 478 LVDEK----LINTXADLFKLTEIQVST------IDRMGKKSATNLINGLEQAKSTTLAKF 527 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I+ LGIR VG A +LA ++ + L V VG+++A+ I+ Sbjct: 528 IYGLGIREVGEATAANLANHFYTLAAIESA----------SLEDLQNVSDVGEVVAKNII 577 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F++ N+ V L + + + + + V TGTL ++ R +A+ + L Sbjct: 578 NFFKEEHNLAIVSGLSEVMHWPTIEIKSAEELPLAEQIFVLTGTLTQMGRTEAKTALQSL 637 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 GA VS +S+ T ++ GD GSKL KAQ LG+ ++ E+ + LL ++ T+ Sbjct: 638 GAKVSGSVSKNTHFVVAGDKAGSKLTKAQDLGISVLTEDGLVALLAEHGITI 689 >gi|332519658|ref|ZP_08396122.1| DNA ligase, NAD-dependent [Lacinutrix algicola 5H-3-7-4] gi|332044217|gb|EGI80411.1| DNA ligase, NAD-dependent [Lacinutrix algicola 5H-3-7-4] Length = 665 Score = 527 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 224/705 (31%), Positives = 370/705 (52%), Gaps = 47/705 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++E+ L QE+ H+ YY P I D ++D + A+ A P+ D N P + Sbjct: 4 KQEIEQLRQELREHNYNYYVLDNPTISDYDFDIKLKELQALEEAHPEFF---DANSPTLR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ + V H SL+ +++EDL+ + TRI + D I +T E K DG Sbjct: 61 VGGEVTKNFNTVVHEHRMYSLDNSYSLEDLKDWETRIKKLV----DGDISYTCELKYDGA 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G + A RGDG G++V+A I+ I ++P L + P ++RGE+ + Sbjct: 117 SISLTYENGNLLKAVTRGDGFQGDEVTANIKTIKSVPLQLKGDYPAKFDIRGEIVLPFKG 176 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 FL +N+E +A G +PY NPRN ASG L+ + ++ + + + + + Q+E Sbjct: 177 FLKMNEERVANGEEPYKNPRNTASGSLKLQDSGEVAKRPLECLLYNLTGTNLGVENQFES 236 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+K R +GF V N R T + + N + R LPY+ DG+V KV+ Q++LG Sbjct: 237 LEKARKMGFKVPNEARLCKTIDEVFKFINHWDTERHNLPYETDGVVVKVNSLYQQEELGY 296 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +++PRW +++KF +Q ST L +I Q+GRTG +TPVA LEPV++ G ++ A+LHN D Sbjct: 297 TSKAPRWAMAYKFKAEQVSTILKEITYQVGRTGAITPVANLEPVDLAGTVVKRASLHNAD 356 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ L DIR+ D V V++ GE+IPK++ + + +R D++P + + CP C Sbjct: 357 QIEKL-----------DIRINDTVFVEKGGEIIPKIIAVDLTQRLQDSKPTKYATHCPEC 405 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 Q+ + R A H C C Q + R++HF+SR A +IEGLG + + K Sbjct: 406 QTPLERLEGE------AKHFCPNYNGCEPQVIGRIQHFISRKAMDIEGLGGETVGLLVKE 459 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I AD++TL + Q I + + S NL + I + IS ER +F++ Sbjct: 460 ----GLITNYADLYTLTKAQ------ILPLERMAEKSAENLINGIEASKQISFERVLFAI 509 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR VG +A+ LAK+Y S + Q L +V +G IA+++V F+ Sbjct: 510 GIRFVGETVAKKLAKHYKSIEALEQA----------SIEDLEKVDEIGIKIAESVVSFFA 559 Query: 618 NPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + N ++ L N +++++ K V +G K+ R++ ++ + G Sbjct: 560 SEENRNIIKRLKNVGVQLEISAEKLANQTNKLKGKSFVVSGVFTKVSRNELKKLIEDNGG 619 Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + +S KTD ++ GD G SK EKA++L + ++ E++FL ++ Sbjct: 620 KNVSSISSKTDFVVAGDKMGPSKKEKAEKLNISLITEDEFLQMVD 664 >gi|332705189|ref|ZP_08425270.1| DNA ligase, NAD-dependent [Lyngbya majuscula 3L] gi|332355932|gb|EGJ35391.1| DNA ligase, NAD-dependent [Lyngbya majuscula 3L] Length = 1092 Score = 527 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 221/736 (30%), Positives = 360/736 (48%), Gaps = 63/736 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + L + + YY PI+ D+ YD L R + +P+L S + P Sbjct: 7 DVNQRIQELRRLLQNASYAYYVLDNPIMADAIYDQLYRELQELETEYPELVTS---DSPT 63 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR----FWQKKDDNSIFFTLE 131 ++G + V H+IP SL+ +N+E+ ++ R R + + + E Sbjct: 64 QRVGEKPATGFVSVRHNIPLYSLDNAFNLEEFSQWQERWQRHISGDISQDSGFNTEYVCE 123 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS------LNIPEII 185 KIDG+ + + YE G V RGDG +GED++ +R I +IP L+ +P ++ Sbjct: 124 LKIDGSALALTYENGILVRGVTRGDGSTGEDITQNVRTIRSIPLRLNLDQLNLDQLPALV 183 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG 244 EVRGE ++ + F +N E G +ANPRNAA+G LR+L P R L FF + L Sbjct: 184 EVRGEAFLPLDVFERINQERAQAGEPLFANPRNAAAGTLRQLEPRIVAKRQLAFFAYTLH 243 Query: 245 KTSE--------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296 ++ Q++ L+ ++ LGFPVN + + + YYN + R LP Sbjct: 244 IPNQDSSEEYTIPMPNCQWDALELLQKLGFPVNPHRQCCASLQDVQDYYNYWDARRQDLP 303 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 Y DG+V K++ F +Q+QLG + PRW I+ K+ ++A +R+ I + +GRTG +TP+A Sbjct: 304 YLTDGVVVKINAFGIQQQLGFTQKFPRWAIALKYPAEEAPSRVEAITVNVGRTGAVTPLA 363 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 LEPV + G + A LHN DY+ L D+RVGD V+V++AGE+IP+VV + Sbjct: 364 ILEPVQLAGTTVQRAALHNGDYVAQL-----------DLRVGDTVIVRKAGEIIPEVVRV 412 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 + R A+PF P+ CP+C +VR A RC +C A L H+ Sbjct: 413 LPELRPDHAKPFEMPTHCPVCSQPLVRPKGE------AVTRCINS-SCPAIVKGTLTHWA 465 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 SR+A +I GLG++ ++ + AD++ L Q S + G Sbjct: 466 SRNALDINGLGEKIVEQLVDQ----GLVTSVADLYDLTLDQLVS------LERMGHKLAQ 515 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 L ++I K + R ++ LGIRHVG+ A++L + + + + AQ Sbjct: 516 KLLNAIAKSKTQPWSRVLYGLGIRHVGSVNAQTLVQTFPTIEQLAQAT----------VT 565 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLV 653 + + +G IAQ++ ++Q N + L + + + + + K V Sbjct: 566 DIEGIYGIGPEIAQSVWGWFQISSNQTLIARLREAGLQLEASTKTIALDQTQPLTGKTFV 625 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 TGTL ++R A++ + G V++ +S KTD ++VG++ GSKLEKAQ+LG+ + E Q Sbjct: 626 ITGTLPTLKRSDAKDLIQNAGGKVTSAVSAKTDYLVVGEDAGSKLEKAQKLGITQLTESQ 685 Query: 714 FLFLLQQYNTTLRIHD 729 L Q++ T Sbjct: 686 LLVKSQKFPATEEAPT 701 Score = 213 bits (542), Expect = 9e-53, Method: Composition-based stats. Identities = 71/250 (28%), Positives = 119/250 (47%), Gaps = 23/250 (9%) Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L H+ SR A +I GLGK+ ++ + AD++ L Q S + G G Sbjct: 863 LTHWASRYALDINGLGKKIVEQLVDQ----GLVTSVADLYNLTLEQLVS------LNGIG 912 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 L ++I K + R ++ LGIRHVG+ A++L + + + + AQ Sbjct: 913 HKLAQKLLNAIAKSKTQPWSRVLYGLGIRHVGSVNAQTLVQTFPTIEQLAQAT------- 965 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIE 648 + + +G IAQ++ ++Q N + L + + + S + Sbjct: 966 ---VTDIEGIYGIGPEIAQSVWGWFQISSNQTLIARLREAGLQLEASTKTIALDKSLPLT 1022 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K V TGTL ++R A++ + G V++ +S KTD ++VG++ GSKLEKAQ+LG+ Sbjct: 1023 GKIFVITGTLPTLKRSDAKDLIQNAGGKVTSAVSAKTDYLVVGEDAGSKLEKAQKLGITQ 1082 Query: 709 MNEEQFLFLL 718 + E Q L LL Sbjct: 1083 LTESQLLDLL 1092 Score = 94.1 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 20/182 (10%) Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518 T LA + Q L H+ SR+A +I GLGK+ ++ + AD++ L Q Sbjct: 701 TVQLAGTKVQQRALTHWASRNALDINGLGKKIIEQLVDQ----GLVTSVADLYDLTLEQL 756 Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578 S + G G L ++I K + R ++ LGIRHVG++ A++LAK + + + Sbjct: 757 VS------LKGIGYKLAQKLLNAIAKSKTQPWSRVLYGLGIRHVGSDKAKTLAKKFRNIE 810 Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638 AQ + + +G IA+++ +++QN N ++ L + SI + Sbjct: 811 QLAQAT----------IPDIEGIYSIGPKIAKSVRDWFQNSSNQTLIDRLREAGLQSIDK 860 Query: 639 HE 640 Sbjct: 861 RP 862 >gi|315502322|ref|YP_004081209.1| DNA ligase, nad-dependent [Micromonospora sp. L5] gi|315408941|gb|ADU07058.1| DNA ligase, NAD-dependent [Micromonospora sp. L5] Length = 717 Score = 527 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 224/709 (31%), Positives = 361/709 (50%), Gaps = 43/709 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 AR+ ++L QE++ H YY P + D+E+D R +A+ +P L P+ P Sbjct: 32 ARERHATLSQELTEHQYRYYVLDAPTVTDAEFDKQLRELEALEAEYPAL---RTPDSPTQ 88 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + VTH+ LSL+ + E+L + R+ R + + E K+DG Sbjct: 89 RVGGTFSTDFTPVTHAERMLSLDNAFADEELAAWSERVER----DAGGPVPYLCELKVDG 144 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-----SLNIPEIIEVRGEV 191 I + YEKG+ V AA RGDG +GEDV+A +R+I +P L ++P++IEVRGE+ Sbjct: 145 LAINLTYEKGRLVRAATRGDGRTGEDVTANVRSIKGVPARLTPAGDFPDVPDLIEVRGEI 204 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y F LN ++ G+ P+ANPRNAA+G LR+ +P +R L VHG+G + Sbjct: 205 YFPVAAFADLNASLVEQGKAPFANPRNAAAGSLRQKDPRVTASRPLRLVVHGVGARTGFR 264 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q E ++ G P ++ R + G+ Y R + ++IDG+V KVD S Sbjct: 265 PAAQSESYAALKAWGLPTSDRWRVVDDLAGVAEYIAYYGRHRHDVEHEIDGVVVKVDPVS 324 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q +LG +R+PRW I+ K+ ++ +T+LLDI++++GRTG +TP A L+PV + G+ + Sbjct: 325 IQGRLGSTSRAPRWAIAFKYPPEEVNTKLLDIEVEVGRTGRVTPRAVLQPVRVAGSTVAY 384 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN ++ + + +GD V++++AG+VIP+V+ +V R DA+PF Sbjct: 385 ATLHNAREVER-----------KGVLIGDTVVLRKAGDVIPEVLGPVVELRPADARPFVM 433 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C + + + RC G AC Q ER+ + SR +IE LG++ Sbjct: 434 PTTCPACGTPLA-----PAKESDVDIRCPNGRACPGQIRERVFYLASRKVLDIEVLGEKG 488 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ I D+F L Q + + N G + T L D++ + + L Sbjct: 489 AAALLDAQ----IITNEGDLFQLDAEQLSRSPFFVNKDGSLGSNATKLLDNLAEAKERDL 544 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R + +L IRHVG A++LA+++ S + A L V VG IA Sbjct: 545 WRVLVALSIRHVGPTAAQALARHFRS----------VAAIEAAGEEELSSVDGVGPTIAA 594 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ E++ + V + ++ +V TGTL R +A E + Sbjct: 595 SVKEWFAVDWHRDVVRKWAEAGVRMAEEAADEGPRPLDGITVVVTGTLGGFSRDQAAEAI 654 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G V+ +S+KT ++VGDNPGSK +KA L + I++E+ F LL Sbjct: 655 QVRGGKVTGSVSKKTGFVVVGDNPGSKADKAATLKLPILDEDGFRVLLD 703 >gi|119503165|ref|ZP_01625249.1| DNA ligase (NAD+) [marine gamma proteobacterium HTCC2080] gi|119460811|gb|EAW41902.1| DNA ligase (NAD+) [marine gamma proteobacterium HTCC2080] Length = 673 Score = 527 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 229/708 (32%), Positives = 359/708 (50%), Gaps = 47/708 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E+ L + YY+ P + DSEYD + FP L Sbjct: 1 MSEVDPYDEVMRLRDLLRSWGVEYYRNDAPTVSDSEYDRTLLALRELEQKFPHLV---SA 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G V H +P LSL+ +N +DL F R+ D + + E Sbjct: 58 DSPTQRVGAAPLEGFETVVHRLPMLSLDNAFNADDLLDFDRRVRERL---DGAQVRYACE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII-EVRGE 190 PK+DG ++I +++G+ AA RGDG +GE+++ +R I ++P LS E RGE Sbjct: 115 PKLDGIAVSIVWQEGELTLAATRGDGRTGENITQNVRTIDSVPLRLSGENIPRYLEARGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT--S 247 +++ + F A N G KP+ NPRNAA+G LR+L+ + R L+F +GLG Sbjct: 175 IFMPRAGFEAFNARARRDGGKPFVNPRNAAAGSLRQLDSSITRRRPLSFCAYGLGYVEGM 234 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E + ++ G P++ R G YY ++ +R L +DIDG+V+KVD Sbjct: 235 SGALLSHTEAMAQLNQWGLPISEHSRSVPGIDGCERYYEDLSQVREGLGFDIDGIVFKVD 294 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 F+ Q++LG +R+PRW I+ KF ++ T +L ++ Q+GRTG +TPVARL+PV +GG Sbjct: 295 TFAEQERLGFVSRAPRWAIARKFPAQEEMTVVLGVEFQVGRTGAVTPVARLDPVFVGGVT 354 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN D I L I+VGD V+V+RAG+VIP+V ++V+ R P A+ Sbjct: 355 VSNATLHNADEIARL-----------GIKVGDTVIVRRAGDVIPQVAGVVVDRRLPQAED 403 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 +FP CP C S +VR+ A RC G AC AQ+ ++HFVSR A +I+G G Sbjct: 404 VAFPDSCPACDSVLVREPGE------AVWRCDAGSACPAQRRAAIEHFVSRRAMDIDGCG 457 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ +D I+ +D++ L + + G S NL +I +N Sbjct: 458 EKIIDQLVD----LDLIKTASDLYELSQDTLAG------LERMGTKSAKNLQAAIEDSKN 507 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L RFI++LGIR VG AR LA+Y+ + + L V VG I Sbjct: 508 TTLSRFIYALGIREVGETTARQLAEYFGALAPLFTATD----------EQLQEVEDVGPI 557 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +A + F+ +P + +L+ + + + V TG L+++ R +A+ Sbjct: 558 VAGHLQRFFADPGRQEMINSLISHGVYWPAPEVQIGDLPLSGQTWVVTGKLEQMSRDQAE 617 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 E + GA VS+ +S KT ++ G GSKL+KA L V +++E +F+ Sbjct: 618 ERLRVFGAKVSSSVSGKTSCVVAGPGAGSKLKKAHSLEVSVIDEAEFI 665 >gi|164686703|ref|ZP_02210731.1| hypothetical protein CLOBAR_00298 [Clostridium bartlettii DSM 16795] gi|164604093|gb|EDQ97558.1| hypothetical protein CLOBAR_00298 [Clostridium bartlettii DSM 16795] Length = 674 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 232/707 (32%), Positives = 371/707 (52%), Gaps = 50/707 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 A+K + L I+YH++ YY P I D EYD L + + P+L R+ + P Sbjct: 2 SAQKRIEELINLINYHNEKYYNQDSPEIEDFEYDNLMKELIKLEEENPELKRN---DSPS 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 N++GG+ +V H IP LSL ++ EDL+ F +R+ + + +E KID Sbjct: 59 NRVGGKPLDKFEQVVHKIPMLSLSNAYSWEDLKDFDSRVREAVGS----DVEYVVEFKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y G F A RG+G GE+++ + I IP + + VRGEVYISK Sbjct: 115 GLSVGLNYNNGIFESGATRGNGIVGENITKNLMTIKNIPLNIDE--KGELTVRGEVYISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF +N + YANPRN A+G LR+L+ R L+ F+ L + K Sbjct: 173 KDFEEINKIQEEQDQPLYANPRNLAAGSLRQLDSKLTAKRPLDIFIFNLEDINSKQFKTH 232 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L+ ++ LGF V+ + T I+ Y R L + IDG+V KV+ + ++Q Sbjct: 233 SESLEYLKQLGFHVSPEFKVFKTMDEIIEYIKYWTEHREDLGFGIDGMVIKVNNLAQREQ 292 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 +G A+SPRW I++KF ++ T+LLDI +++GRTG +TP A LEP+ + G ++ ATLH Sbjct: 293 MGYTAKSPRWAIAYKFPAERKETKLLDIVVEVGRTGTITPTAVLEPIRLAGTTVSRATLH 352 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NEDYI +DI++ D VLV++AG++IP+VV++I +R + F P C Sbjct: 353 NEDYI-----------NEKDIKINDTVLVQKAGDIIPQVVEVIKEKRTGEEIEFKMPEEC 401 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C VR AA +C ++C AQ + HF SR+A +I+GLG+ + Sbjct: 402 PVCGEPTVRLEGE------AAVKCIN-ISCPAQIRRGIIHFASREAMDIDGLGESIITLL 454 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 K + I+ +D++ L++ Q + + GD S TNL ++INK + L RFI Sbjct: 455 LKQD----LIKDISDLYYLKKEQIS------VLERMGDKSATNLINAINKSKENDLWRFI 504 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 LGI+ +G + A+ LA + LI + G +A ++VE Sbjct: 505 NGLGIKLIGTKAAKILASEFKDLDKLMSATE----------QELINLEEFGQTMADSVVE 554 Query: 615 FYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F++ +NI +E L + + I ++++ E K+V TGTL ++R+ A+E + + Sbjct: 555 FFKEEKNISVIEKLKEAGVNTKLIESDDEDIPKIFEKMKIVLTGTLPTLKRNDAKEMIEK 614 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G ++ +S+ T ++ G+ GSKL KA LG+K+++EE+FL L+ Sbjct: 615 RGGKATSSVSKSTSFVLAGEEAGSKLTKANDLGIKVIDEEKFLQLID 661 >gi|188995252|ref|YP_001929504.1| DNA ligase [Porphyromonas gingivalis ATCC 33277] gi|254781390|sp|B2RKL2|DNLJ_PORG3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|188594932|dbj|BAG33907.1| DNA ligase [Porphyromonas gingivalis ATCC 33277] Length = 669 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 218/704 (30%), Positives = 348/704 (49%), Gaps = 47/704 (6%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 + L + + H+ YY S P I D EYDA+ ++ + + +P+ + P+ P +++G Sbjct: 10 RIEELRRILREHEYRYYVLSSPTIDDFEYDAMMKQLEELEREYPEW---DSPDSPTHRVG 66 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + V H P LSL +N +++ F R+ Q E K DG I Sbjct: 67 SDKTEGFASVRHDRPMLSLSNTYNYDEIGDFYRRVSEGLQ---GAPFEIVAELKFDGLSI 123 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII-EVRGEVYISKNDF 198 ++ YE G V A RGDG G+DV+A +R I ++P L + + EVRGE+ + +F Sbjct: 124 SLIYEDGMLVRAVTRGDGIMGDDVTANVRTIRSVPLRLRGDDYPRMLEVRGEILLPFKEF 183 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N + A G +ANPRNAASG +++L+P + + E A+ Y+ L Sbjct: 184 DRINAQREAEGEPLFANPRNAASGTIKQLDPHIVAGRNLDAYFYYLYSDEPLAENHYDRL 243 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + R GF V++ V + + ++ + + R TLP DG+V KV+ + Q LG Sbjct: 244 MQARQWGFKVSDAVTLCCSKEDVYAFIDRFDTERLTLPVATDGIVLKVNAPAQQDLLGFT 303 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 A+SPRW I++K+ ++ TRL + Q+GRTG +TPVA L+PV I G ++ A+LHN D+ Sbjct: 304 AKSPRWAIAYKYQAERVRTRLQHVSYQVGRTGAVTPVANLDPVLISGTVVRRASLHNADF 363 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +D+ GD V V++ GE+IPK+V + + R D +P F CP C Sbjct: 364 I-----------AEKDLHEGDFVYVEKGGEIIPKIVGVDTDARSIDGRPIVFTVLCPDCA 412 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 + +VR+ AA+ C C QQ RL+H+ R A +I + + Sbjct: 413 TPLVREQGE------AAYYCPNAEGCPQQQKGRLEHYCGRKAADINIGPET-----IELL 461 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 IR AD + L Q + + GF + L DSI + + +F LG Sbjct: 462 YSRNMIRNVADFYALTEEQLLT------LPGFKKRAAAKLLDSIEASKARPYQAILFGLG 515 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IR VG +A+ LA Y S A + L+++ +G+ IA A++ F+ Sbjct: 516 IRFVGETVAKKLAAVYPSIDALAAATS----------EELVQIDEIGERIAAAVLHFFSL 565 Query: 619 PRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 +N +E L L VS VS+ + K +V +GT +K R + + V G + Sbjct: 566 RQNRELIERLRLAGVSLEAETVSVPVSARLAGKTVVISGTFEKYSRDEYKAMVEDNGGRM 625 Query: 678 SAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 + +S KT I+ G + G SK EKA++LGV++M+EE+FL L+++ Sbjct: 626 AGSVSSKTSFILAGSDMGPSKREKAEKLGVRLMSEEEFLRLIEE 669 >gi|301163404|emb|CBW22954.1| putative DNA ligase [Bacteroides fragilis 638R] Length = 665 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 222/706 (31%), Positives = 348/706 (49%), Gaps = 48/706 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++++ L ++ H+ YY + P I D E+D L R + P+ D N P Sbjct: 3 VKEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEYK---DENSPTM 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G ++N + +V H P LSL ++ ++ F R+ + + E K DG Sbjct: 60 RVGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRVRKAL----NEDFEICCEMKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195 T I++ YE GK + A RGDG G+DV+ ++ I +IP VL N PE+ E+RGE+ + Sbjct: 116 TSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPEVFEIRGEILMPW 175 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 F ALN E A +ANPRNAASG L+ N + + G Y Sbjct: 176 EVFEALNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPTDGHY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ+ GF ++ + + T + + N R L DG+V KV+ Q+ L Sbjct: 236 ENLQEAAKWGFKISPLMHKCQTLQEVFDFINYWDVERKNLNVATDGIVLKVNSLKQQRNL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+GL D+ +GD V V++ GE+IPK+ + + R + F + CP Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDTSVRFMIGEKVKFITHCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S+++R AAH C AC Q +++HF+SR A NI+GLG + +D F+ Sbjct: 405 ECGSKLIRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + I AD++ L + GD S N+ I + + + ER IF Sbjct: 459 R----LGLIHDTADLYRLTTDDIRG------LDRMGDKSAENIIKGIMQSKEVPFERVIF 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG +A+ +AK + + D +LI + +G+ IA++I+ + Sbjct: 509 ALGIRFVGETVAKKIAKSFKDIEELENA----------DLETLINIDEIGEKIARSILNY 558 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + N N V+ L E ++ + +V +G R + ++ + + Sbjct: 559 FANESNRKLVDRLKTAGLQLYRPEEDLSGHTDKLAGQSIVISGVFTHHSRDEYKDLIEKH 618 Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G +S KT I+ GDN G +KLEKA +LG+KIMNEE+FL L+ Sbjct: 619 GGKNVGSISSKTSFILAGDNMGPAKLEKASKLGIKIMNEEEFLKLI 664 >gi|329770498|ref|ZP_08261876.1| DNA ligase [Gemella sanguinis M325] gi|328836247|gb|EGF85916.1| DNA ligase [Gemella sanguinis M325] Length = 666 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 235/712 (33%), Positives = 385/712 (54%), Gaps = 48/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ ++E+ L + ++ + YY P I D+EYD L ++ + + +P+L + N Sbjct: 1 MKEIKEEIYKLVKLLNKYSYDYYVEDNPQISDTEYDTLYKQLEKLEKEYPELIQE---NS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + KVTH +P LSL ++ EDLR F RI + + I + E K Sbjct: 58 PTQRVGDVVLSEFEKVTHKVPMLSLSNTFSTEDLRDFDNRIKKVV---ANRKIEYICELK 114 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I+I Y GK + AA RGDG GE+V+ I+ I +IP+VL + EVRGEVY+ Sbjct: 115 IDGLAISINYVNGKLISAATRGDGTVGEEVTDNIKTIFSIPKVLKD--NKTFEVRGEVYL 172 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 K F LN+E +ANPRNAA+G LR+L+ + + Sbjct: 173 PKKSFNILNEERKENNEVLFANPRNAAAGSLRQLDSKIT-AQRRLSAFIYSVVGDNTIES 231 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q + L+ PVNN + +++Y R LPY+IDG+V KV+ +SLQ+ Sbjct: 232 QLQALKTAEEYELPVNNNYKLCKNIDEVINYIEYWDINRKNLPYEIDGIVIKVNSYSLQE 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 ++G +SPRW + KF E++ +T+LLD+++ +GRTGI+TPVA+L+P+ I G+ ++ A+L Sbjct: 292 EIGYTQKSPRWATAFKFPEEELATKLLDVELSVGRTGIVTPVAQLDPIVISGSTVSKASL 351 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN+D I L DI +GD V+VK+AGE+IPKVV ++ R +++ + P+ Sbjct: 352 HNKDVIDEL-----------DIHIGDMVIVKKAGEIIPKVVRVLKELRLENSEKYIMPNR 400 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S +V + + C Q + ++ HF SRDA NIEGLG + + Sbjct: 401 CPSCNSELVSKKDDPFIR-------CVNPECPEQNIRKIIHFASRDALNIEGLGDKVVAT 453 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ I D+F+L+R + + G+ SV NL +I +N SL++ Sbjct: 454 LYEQ----GIISHTIDLFSLEREKLID------LDRMGEKSVDNLLKAIENSKNSSLDKV 503 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I++LGI +VG + A+ LA+ YL+ LI +P +G I A++++ Sbjct: 504 IYALGILNVGKKAAKILAEKYLNLTTLMTAT----------VDELINLPDIGLITAESVI 553 Query: 614 EFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 +F N NI + L+ +P + + K +V TG L ++ R++A+EY+ + Sbjct: 554 DFLSNEINIKFINDLISIGMNPQYKVQKIEDDNIFSGKTIVLTGKLVELTRNEAKEYLEK 613 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 LGA V+ ++ KTD+++ G+ GSKL KA+QLG+++++EE+F+ +L + Sbjct: 614 LGAKVTGSVTTKTDLVLAGEKAGSKLAKAEQLGIQVISEEEFISMLGEKKVN 665 >gi|221066629|ref|ZP_03542734.1| DNA ligase, NAD-dependent [Comamonas testosteroni KF-1] gi|220711652|gb|EED67020.1| DNA ligase, NAD-dependent [Comamonas testosteroni KF-1] Length = 708 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 250/711 (35%), Positives = 379/711 (53%), Gaps = 52/711 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++++L ++ YY P + D EYD + ++ +A+ A+P L P+ P ++ Sbjct: 32 KVAALRAQLWQWAHEYYVLDAPTVPDGEYDRVYQQLEALEGAYPALV---TPDSPTQRVI 88 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKDDNS-IFFTLEPKIDG 136 G + L V H++P LS++ + E F R+ + + I + EPK DG Sbjct: 89 GAVLDGLTPVRHAVPMLSIQTETDNEATGAMAFDQRVRKELGLDASAAAIEYVAEPKFDG 148 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI--PEIIEVRGEVYIS 194 + +RYE G+ V A RGDG GEDV+ IR I IP L + P ++EVRGEV+++ Sbjct: 149 LAMNLRYENGRLVQATTRGDGEVGEDVTHNIRTIRQIPLSLPADRNVPPVVEVRGEVHMA 208 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEI---- 249 K D LN A G K +ANPRNAA+G +R+L+ + R L+FF +GLG+ + Sbjct: 209 KADLEKLNARQQAAGAKTFANPRNAAAGSVRQLDSSIAAQRPLSFFAYGLGEITPPEQGG 268 Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Y MLQ +R GFPV V A +V+++ + + R+ LPY+IDG+VYKV+ Sbjct: 269 PDFGTHYAMLQTLRSWGFPVAPQVALARGASELVAFHQRIGAERANLPYEIDGVVYKVNS 328 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ++LG ++R PRW ++HK+ ++ T + ID+Q+GRTG LTPVARL PV +GG ++ Sbjct: 329 LALQRRLGFKSREPRWAVAHKYPAQEMPTLMEAIDVQVGRTGKLTPVARLAPVQVGGVVV 388 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 TNATL N I+ + +RVGD+V+V+RAG+VIP+VV + ER F Sbjct: 389 TNATLSNLFDIRK-----------KGVRVGDQVIVRRAGDVIPEVVGRVPGERPVYVPNF 437 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CPIC S VVR+ A HRCTGGL C AQ+ E + HF R A +IEGLG Sbjct: 438 RMPRTCPICASAVVREKGE------ANHRCTGGLFCGAQRKEAILHFAHRRAMDIEGLGD 491 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + +D +R+ D++ L + + + + S N+ ++ K ++ Sbjct: 492 KLVDQLVD----GQVVRVLPDLYRL------GLSSLAALDRMAEKSAQNVLAALEKSKST 541 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L+RF+F LGIR+VG AR LAK++ L++V VG ++ Sbjct: 542 TLQRFLFGLGIRNVGESTARDLAKHFGKLDAIMDA----------SVEELLQVKDVGPVV 591 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 A +I F+ P N VE L G + + +V TGTL + R A+ Sbjct: 592 ADSIHTFFAQPHNREVVEQLRACGVHWEEGEPVEKAPQILAGLTVVLTGTLPTLGRDVAK 651 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + GA VS +S+KT ++ G GSKL KA++LGV +++E L LL Sbjct: 652 DMLEAAGAKVSGSVSKKTSYVVAGAEAGSKLAKAEELGVPVLDEAGMLALL 702 >gi|161485980|ref|NP_737948.2| NAD-dependent DNA ligase LigA [Corynebacterium efficiens YS-314] gi|259506289|ref|ZP_05749191.1| DNA ligase [Corynebacterium efficiens YS-314] gi|259166069|gb|EEW50623.1| DNA ligase [Corynebacterium efficiens YS-314] Length = 678 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 223/717 (31%), Positives = 351/717 (48%), Gaps = 52/717 (7%) Query: 12 LSIEQARKE--LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 ++ + A+ + L +++ YH D YY +P I D+++DAL R+ + P+LA Sbjct: 1 MTDDNAQLRRTWNELAEKVRYHRDLYYNQ-QPEIPDADFDALFRQLQDLEEQHPELAV-- 57 Query: 70 DPNGPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++G + S V H LSL+ +++ E+LR ++ R + Sbjct: 58 -PDSPTKEVGAPVTEQSSFDNVEHLERMLSLDNVFDEEELRDWLART---------PAKR 107 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR----VLSLNIPE 183 + E KIDG I + Y G AA RGDG GED++A R I IP IP Sbjct: 108 YLTELKIDGLSIDLVYRNGMLERAATRGDGRVGEDITANARVIGDIPHELTATEEYPIPA 167 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHG 242 ++EVRGEV+I DF +N + I G KP+ANPRNAA+G LR+ NP D R L HG Sbjct: 168 VLEVRGEVFIPIEDFADVNAQRIEDGGKPFANPRNAAAGSLRQKNPEDVKKRRLRMITHG 227 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 +G + Q++ + G P ++ T +V R +++DGL Sbjct: 228 IGYSEGFQPASQHDAYLALAAWGLPTSSYTEAVETADAVVDKVLYWADHRHDALHEMDGL 287 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KVD+ + Q+ LG +R+PRW I++K+ ++ +T+L+DI + +GRTG +TP A +EPV Sbjct: 288 VIKVDDIASQRALGSTSRAPRWAIAYKYPPEEVTTKLIDIKVSVGRTGRVTPFAMMEPVF 347 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G+ ++ ATLHN+ +K + + +GD V+V++AGEVIP+V+ +V R Sbjct: 348 VAGSTVSMATLHNQSEVKR-----------KGVLIGDTVVVRKAGEVIPEVLGPVVELRD 396 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 + F FP CP C S + A RC +C Q +RL + R AF+ Sbjct: 397 GTEREFVFPEHCPECGSTLAPTRAE-----DADWRCPNTRSCPGQLSQRLTYIAGRGAFD 451 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IE LG++ ++ + A +F L + G + S L ++ Sbjct: 452 IEALGEKGAQDLIRN----GILVDEAGLFDLTEEDLLESDVYTTKAGAVNASGRKLLANL 507 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 +R+N L R + +L IRHVG AR+LA Y S Q L Sbjct: 508 EQRKNTDLWRVLVALSIRHVGPTAARALAGRYRSMQKLVDAP----------VDELAETD 557 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 VG IIAQ+ ++++ + V+ + + +E +V TG L+ Sbjct: 558 GVGMIIAQSFKDWFEVDWHRAIVDTWAAAGVTMEDAETEQLEQTLEGLTIVVTGGLEGFT 617 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +E + G S +S+KTD ++VG+N GSK KA++LG+ I++EE F+ LL Sbjct: 618 RDSVKEAIISRGGKASGSVSKKTDYVVVGENAGSKATKAEELGLTILDEEAFVRLLD 674 >gi|240168924|ref|ZP_04747583.1| NAD-dependent DNA ligase LigA [Mycobacterium kansasii ATCC 12478] Length = 683 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 217/713 (30%), Positives = 350/713 (49%), Gaps = 43/713 (6%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 + L +++ H YY PII D+E+D L RR + + +P+L P+ P +G Sbjct: 4 QWQDLAEQVREHQFRYYVRDAPIITDAEFDELLRRLEVLEEQYPEL---RTPDSPTQLVG 60 Query: 80 GE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G V H LSL+ ++ +L + R++ + ++ + E KIDG Sbjct: 61 GAGFATEFEPVEHLERMLSLDNAFSAAELAAWAARVH----AEVGDAASYLTELKIDGVA 116 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYIS 194 +++ Y++G+ A+ RGDG +GEDV+ R I +P L +PE++EVRGEV+ Sbjct: 117 LSLVYQQGRLTRASTRGDGRTGEDVTLNARTIDDVPERLSPSDDYPVPEVLEVRGEVFFR 176 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 DF ALN ++ G+ P+ANPRN+A+G LR+ +P R L HGLG T Sbjct: 177 VADFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHTQGFRPAS 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ +R G PV+ N G+ + R + ++IDG+V KVDE +LQ+ Sbjct: 237 LHQAYLALRAWGLPVSEHTTLVNDMAGVQERIDYWGEHRHEVDHEIDGVVIKVDEVALQR 296 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG +R+PRW I++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ + ATL Sbjct: 297 RLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVAQATL 356 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN +K + + +GD V++++AG+VIP+V+ +V+ R + F P+ Sbjct: 357 HNASEVKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEREFVMPTT 405 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C + + + + A RC C AQ ER+ H SR A +IE LG + Sbjct: 406 CPECGTVLAPE-----KEGDADIRCPNSQRCPAQLRERVFHVASRSALDIEVLGYEAAVA 460 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + A I D+F L T G + L +++K + L R Sbjct: 461 LLQ----AGVIASEGDLFALTEDDLLRTELFRTKAGGLSANGKRLLANLDKAKAAPLWRV 516 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + +L IRHVG AR+LA + + + A L V VG IA A+ Sbjct: 517 LVALSIRHVGPTAARALATEFGTLEAIANA----------STEQLAAVEGVGPTIAAAVS 566 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 E++ + V+ +++V + +V TG+L R +A+E + Sbjct: 567 EWFTVDWHREIVDKWRAAGVRMADERDESVPRTLAGLTVVVTGSLAGFSRDEAKEAIVAR 626 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 G + +S+KT ++ GD+PGSK +KA +LGV I++E+ F LL Q Sbjct: 627 GGKAAGSVSKKTSYVVAGDSPGSKYDKAVELGVPILDEDGFRELLAQGPADPE 679 >gi|121594439|ref|YP_986335.1| DNA ligase [Acidovorax sp. JS42] gi|166215384|sp|A1W7N4|DNLJ_ACISJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|120606519|gb|ABM42259.1| DNA ligase, NAD-dependent [Acidovorax sp. JS42] Length = 731 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 248/740 (33%), Positives = 381/740 (51%), Gaps = 81/740 (10%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ +L ++++ YY P + D+EYD ++ A+ A+PDL P+ P ++ Sbjct: 22 KIKALREQLNRWAHEYYVQDTPSVPDAEYDRAFQQLQALEGAYPDLV---TPDSPTQRVL 78 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKDD-NSIFFTLEPKIDG 136 G + L V H +P LS+ + E + F R+ R + D + + EPK DG Sbjct: 79 GAVLDGLTPVRHRVPMLSIRTETDTEASGAQAFDARVRRELKLPPDAPPVEYVAEPKFDG 138 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 +++RYE G+ V AA RGDG GEDV+ +R I IP L +P ++EVRGEVY+ + Sbjct: 139 LAMSLRYEGGRLVQAATRGDGEVGEDVTHNVRTIRQIPLSLPAGVPPVLEVRGEVYMRRA 198 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE-----IF 250 DF ALN+ G K + NPRNAA+G +R+L+ R L+FF +GLG+ + Sbjct: 199 DFDALNERQREKGDKTFVNPRNAAAGAVRQLDSGITAQRPLSFFAYGLGEVTPAAEGGPD 258 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + MLQ+++ GFPV V+ A +++++ + + R LPYDIDG+VYKV+ + Sbjct: 259 FGTHFGMLQQLKEWGFPVAAQVQIAQGASELIAFHQRVGAERDALPYDIDGVVYKVNSLA 318 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG R PRW ++HK+ ++ TR+ ID+Q+GRTG LTPVARL PV +GG +TN Sbjct: 319 LQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDVQVGRTGKLTPVARLAPVFVGGVTVTN 378 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV---------------- 414 ATLHN ++ + +RVGD+V+V+RAG+VIP+VV Sbjct: 379 ATLHNLFELRR-----------KKVRVGDQVIVRRAGDVIPEVVGVVPAGAGLAVLAGSD 427 Query: 415 ---------------DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCT 459 + R P F P CPIC S VVR+ HRC+ Sbjct: 428 ALVDAASSADGTAPAQPLAGPRQPYVPNFRMPRQCPICGSAVVREPGE------VNHRCS 481 Query: 460 GGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT 519 GGL C AQ+ + + HF R A +IEGLG++ +D IR D++ L Sbjct: 482 GGLFCPAQRKQAVLHFAQRRAMDIEGLGEKLVDQLVD----GHVIRTLPDLYRL------ 531 Query: 520 STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQN 579 + + + + S N+ D+++K + +L RF+F LGIRHVG A+ LA+++ Sbjct: 532 GLSSLAQLDRMAEKSAQNVLDALDKSKRTTLARFLFGLGIRHVGEATAKDLARHFGQLDA 591 Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG-R 638 L++V VG ++A+AI F+ P N VE L Sbjct: 592 IMDA----------GVEQLLQVNDVGPVVAEAIHTFFAQPHNREVVEQLRACGVTWDESE 641 Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698 + + +V TGTL + R A++ + GA V+ +S+KT ++ G + GSKL Sbjct: 642 PAAAATLPLAGMTVVLTGTLPTLGRDAAKDLLESAGAKVAGSVSKKTHYVVAGADAGSKL 701 Query: 699 EKAQQLGVKIMNEEQFLFLL 718 KAQ+LG+ +++E+ LL Sbjct: 702 AKAQELGIPVLDEDGLHALL 721 >gi|148243508|ref|YP_001228665.1| NAD-dependent DNA ligase LigA [Synechococcus sp. RCC307] gi|166216253|sp|A5GWQ3|DNLJ_SYNR3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|147851818|emb|CAK29312.1| NAD-dependent DNA ligase [Synechococcus sp. RCC307] Length = 675 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 217/711 (30%), Positives = 352/711 (49%), Gaps = 48/711 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 Q + + L Q ++ YY P D+ YD L R + PDL + P Sbjct: 5 AQQQLRAAELRQLLNRAAHAYYVLDAPEFEDAVYDRLYRELLDLEQQHPDLL---SADSP 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG V H I LSL+ +N E+L+ + R+ R + + + E KI Sbjct: 62 TQRVGGPPAEGFSSVEHRIGMLSLDNAFNAEELQAWDARLGRQLEDNPERQREYVCELKI 121 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYI 193 DG + + Y G V AA RGDG GE+++A +R I +P L P +EVRGE +I Sbjct: 122 DGNALALSYADGVLVRAATRGDGSRGEEITANVRTIQAVPLRLQLKQPPAWVEVRGEAFI 181 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-A 251 + F A+N E G +ANPRNA +G LR+L+P R L+FF + + ++ Sbjct: 182 PDDTFEAINAERQQRGEALFANPRNACAGTLRQLDPKAVAARRLDFFAYTVHLPADEMGP 241 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 K Q++ LQ + GF VN + + G+V++Y+ + R LPY DG+V K+D Sbjct: 242 KSQWDALQWLETAGFRVNPHRERTSGADGVVAFYDRWEEQRHQLPYATDGVVVKLDALER 301 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+ G ++PRW I+ K+A ++A +RLL + Q+GRTG++TPVA E V + G ++ A Sbjct: 302 QQLAGFTQKAPRWAIALKYAAEEAPSRLLRLVAQVGRTGVVTPVAEFEAVPLAGTSVSRA 361 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D ++ L D+ GD ++V++AGE+IP+V+ ++ R A+ P Sbjct: 362 TLHNADRLEEL-----------DLHSGDTIVVRKAGEIIPEVLRVLPELRPEGAEQLELP 410 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 S CP C S +VR+ AA RC +C A L+H+VSR A +++GLG + + Sbjct: 411 SHCPECGSLLVRESGE------AATRCVNS-SCPAILRGALRHWVSRQAMDVDGLGGKLI 463 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + +R AD++ L S + G+ S +NL +++ R Sbjct: 464 EQLVDR----GLVRSIADLYRLDAALLAS------LERMGEQSASNLIEALAASRQRPWH 513 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R +++LGI H+G+ A++LA + S++ +L + +G I+Q+ Sbjct: 514 RLLYALGIHHIGSVNAKTLAAAFPSWEALQSASE----------EALNELYGIGPEISQS 563 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQ 667 + ++ N + L P S + + LV TGTL + R +AQ Sbjct: 564 MQQWCSTEANQSLMAELAALELPLASDDSSAESAGAIGALTGQTLVLTGTLPNLSRLEAQ 623 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + G V+ +S+KT+ ++ G GSKL+KA++LGV +++E + LL Sbjct: 624 ALIEAAGGKVTGSVSKKTNYVVAGSEAGSKLQKAEKLGVAVIDEAELKALL 674 >gi|325102906|ref|YP_004272560.1| DNA ligase, NAD-dependent [Pedobacter saltans DSM 12145] gi|324971754|gb|ADY50738.1| DNA ligase, NAD-dependent [Pedobacter saltans DSM 12145] Length = 670 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 212/711 (29%), Positives = 363/711 (51%), Gaps = 46/711 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S+ + ++++ +L E++ H+ YYQ + P I D E+D + + + P R Sbjct: 1 MSLFEIKEKIDALVTELNRHNYNYYQLAMPTISDYEFDQKLKELEKLEQENPAFIRI--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+GGE+ + VTH P LSL +N +DL F RI + ++ + E Sbjct: 58 DSPTQKVGGEITKTFKTVTHKWPMLSLGNTYNEQDLVDFDQRIRKIIG----DNFEYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 K DG I++ YE G + A RGDG G++V+ I+ I TIP + I E+RGE Sbjct: 114 LKFDGLSISLTYENGDLIRAVTRGDGTKGDEVTTNIKTIRTIPHRIKGEGILPSFEIRGE 173 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 V++ K F LN E I G +P+ANPRN ASG ++ N ++ + + Sbjct: 174 VFMHKAAFEKLNQERIENGEQPFANPRNFASGTVKMQNSAEVAKRPLDCFLYFLYADKKP 233 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +E L + GF ++ + + + R L YDIDG+V KV+ ++ Sbjct: 234 FPTHWESLHAVEKWGFKISQESKLCKNLAEVFDFITYWDQERFKLSYDIDGIVIKVNSYA 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG A+SPRW IS+KF + T L+++ Q+GRTG +TPVA L+PV + G + Sbjct: 294 QQEELGFTAKSPRWAISYKFKAAEVETELIEVTYQVGRTGAVTPVANLKPVLLAGTTVKR 353 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN + I+ L D+ GD VLV++ GE+IPK++ + +++R DAQ + Sbjct: 354 ATLHNANEIERL-----------DLYEGDTVLVEKGGEIIPKIMGVNLDKRKSDAQKIHY 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 + CP C + +VR + A H C C Q + +++HF+SR NI+G+G + Sbjct: 403 ITHCPECGTELVRKVGE------AVHYCPNDEGCRPQIIGKMQHFISRKVMNIDGIGDET 456 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + IR +DI+ L++ + ++ + FG+ SVTN+ I + + Sbjct: 457 IETLYSK----GFIRHISDIYNLKQDED----SLKQMDRFGEKSVTNMLLGIENSKQMPF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E+ +F LGIR+VG +A+ LA ++ + QN + LI +G+ IAQ Sbjct: 509 EKVLFGLGIRYVGETVAKKLALHFKNIQNLQHA----------SFEQLIEAEEIGERIAQ 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQE 668 +I+E++ + +I + L+ ++ + S + + + +G + R + ++ Sbjct: 559 SILEYFSDETHINEINKLITYGLQFEIEEKEVILQSESLLGQTFLISGVFENHSREELKK 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G + + +S K + ++ GDN G SKLEKA +L + I++E+ LL Sbjct: 619 IIEDNGGKMLSSISAKLNYLVAGDNMGPSKLEKANKLNIPIISEQDLFNLL 669 >gi|330995784|ref|ZP_08319681.1| DNA ligase [Paraprevotella xylaniphila YIT 11841] gi|329574514|gb|EGG56079.1| DNA ligase [Paraprevotella xylaniphila YIT 11841] Length = 669 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 212/709 (29%), Positives = 351/709 (49%), Gaps = 49/709 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++++ L E+ H+ YY + P I D E+D + R + A P+ +DP+ P Sbjct: 4 EVKEQIERLRSELHRHNYNYYVLNAPEISDQEFDRMMRELQDLEAAHPEF---DDPDSPT 60 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G ++N +V H P LSL +N +++ F R+ + E K D Sbjct: 61 RRVGSDLNQEFVQVPHRYPMLSLSNTYNKQEVADFYERVRSGL---EGEPFEICCEMKYD 117 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYIS 194 G I++ YE+G+ V A RGDG G+DV+ ++ I IP L+ N PE E+RGE+ + Sbjct: 118 GLSISLTYEQGRLVRAVTRGDGVQGDDVTENVKTIRCIPLRLNGNGYPEEFEIRGEILMP 177 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 F ALN E +ANPRNAASG L+ N + + + G Sbjct: 178 WTSFEALNREREEREEPLFANPRNAASGTLKSKNSAVVAQRKLDAYLYYLLGEHVPFDGH 237 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 YE LQ GF ++ G+++ T GI + + R LP DG+V KV+ Q+ Sbjct: 238 YENLQAACSWGFKISGGMKKVTTLQGIYDFIDYWDVERKNLPVATDGIVLKVNSQRQQRA 297 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW I++KF ++A TRL + Q+GRTG +TPVA ++PV + G ++ ATLH Sbjct: 298 LGYTAKSPRWAIAYKFQAERARTRLNAVTFQVGRTGTVTPVANMDPVQLAGTVVRRATLH 357 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA-QPFSFPSF 433 N D ++ L D+ +GD V V++ GE+IPK+V + ++ R + F + Sbjct: 358 NADVMEQL-----------DLHIGDMVYVEKGGEIIPKIVGVDIDARGAETGPRAEFITR 406 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C + +VR AA C AC Q R++H++SR A NI+ LG + +D Sbjct: 407 CPECGAELVRYEGE------AAWYCPNDTACPPQIKGRIEHYISRRAMNIDSLGPETVDD 460 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 +++ IR AD++ ++ Q G + S + SI + ER Sbjct: 461 YYRR----GLIRDVADLYDIRVEQING-------DGTREKSAQKIVRSIADSVEVPFERV 509 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F+LGIR VG A++LA+++ S + ++++ +G +IA++++ Sbjct: 510 VFALGIRFVGEIAAKALARHFKSMDALSSA----------SLEDMLQINGIGVVIAESVI 559 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVT 671 ++ N N V L ++ E+ S ++ + +V +G R + + + Sbjct: 560 RYFANEANHDLVRRLREKGVRMELSDEELSSHSDKLSGQSIVVSGVFSLHSRDEYKAMIE 619 Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 Q G +S KT ++ G N G +KLEKA +LG+ I++EE+FL ++ Sbjct: 620 QHGGKNVGSISSKTSFVLAGANMGPAKLEKAGKLGIPILSEEEFLKKIE 668 >gi|229493359|ref|ZP_04387148.1| DNA ligase, NAD-dependent [Rhodococcus erythropolis SK121] gi|229319675|gb|EEN85507.1| DNA ligase, NAD-dependent [Rhodococcus erythropolis SK121] Length = 700 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 219/723 (30%), Positives = 355/723 (49%), Gaps = 42/723 (5%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +AR++ + L +E+ H YY P+I D +D L + +A+ +PDL P+ Sbjct: 12 PNEAREQWTELAEEVRQHQFRYYVRDAPVISDGAFDTLLGQLNALEEQYPDL---RTPDS 68 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +GG V H LSL+ +++ +LR +I ++ ++ + + E K Sbjct: 69 PTQLVGGGFATDFTSVDHLERMLSLDNVFDESELRAWIAKVE----QETGPELHYLCEVK 124 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRG 189 IDG + + YE GK V AA RGDG +GE V+ I IP L+ IP ++EVRG Sbjct: 125 IDGVALNLVYENGKLVRAATRGDGRTGELVTLNALTINDIPERLTATDEYPIPSLLEVRG 184 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EV+ DF ALN ++ G+ P+ANPRN+A+G LR+ NP R L HG G+ Sbjct: 185 EVFFRLEDFAALNASLVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGFGRMEG 244 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 QY+ + G PV+ + +V R + ++IDGLV KVDE Sbjct: 245 FEPASQYDAYVALAAWGLPVSTHTSRVVGADAVVEKMKYWGEHRHDVEHEIDGLVVKVDE 304 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 SL ++LG +R+PRW I++K+ ++ +T+LLDI + +GRTG +TP A +EPV + G+ + Sbjct: 305 MSLHRRLGTTSRAPRWAIAYKYPPEEVTTKLLDIRVSVGRTGRVTPFAYMEPVTVAGSTV 364 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHN +K + + +GD V++++AG+VIP+V+ + + R + F Sbjct: 365 SLATLHNGSEVKR-----------KGVLIGDTVVLRKAGDVIPEVLGPVADVRDGTEREF 413 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C + + + RC C AQ ER+ H R AF+IE LG Sbjct: 414 VMPTHCPECGTLLA-----PAKEGDVDVRCPNQQYCPAQLRERVFHVSGRGAFDIEVLGY 468 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + +++ I D+F+L + G + L +++ ++ Sbjct: 469 EAATGLLEAK----VIGDEGDLFSLDAEKLIEVPIFRTNAGSLSANGKRLLANLDSAKDK 524 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L R + +L IRHVG AR+LA + S Q + L V VG I Sbjct: 525 PLWRVLVALSIRHVGPTAARALAGEFGSLQRIREA----------SVDELAAVDGVGSTI 574 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A A+VE++ + V+ + ++ +E +V TG+L+ R +A+E Sbjct: 575 AAAVVEWFSVDWHQQIVDKWASAGVRMEDERDDSIPRNLEGLSIVVTGSLETYSRDQAKE 634 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIH 728 + G + +S+KT ++VG+ PGSK +KA +LGV +++E+ F LL+ + Sbjct: 635 AILVRGGKAAGSVSKKTAFVVVGEAPGSKHDKAVELGVPVLDEDGFRRLLEDGPDAVAPT 694 Query: 729 DDD 731 D D Sbjct: 695 DLD 697 >gi|312870519|ref|ZP_07730638.1| DNA ligase (NAD+) [Lactobacillus oris PB013-T2-3] gi|311093981|gb|EFQ52306.1| DNA ligase (NAD+) [Lactobacillus oris PB013-T2-3] Length = 679 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 233/722 (32%), Positives = 372/722 (51%), Gaps = 49/722 (6%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 + P++ L++ A++E++ L +++ YY+ P + D YD +R + FP Sbjct: 2 DKPTPVDQLTLAAAKQEIAPLREQLIKWGQEYYEQDNPSVEDYVYDRAYQRLVELEQRFP 61 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 +L S + P +GG L KVTH IP LS+ +++I++L F R Sbjct: 62 ELKTS---DSPTQHVGGGPTSELTKVTHEIPMLSMGDVFSIDELMDFNQRQQD--NGDVS 116 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 + + LE KIDG +++ YE G+ V + RG+G+ GEDV+A + I +IP L + Sbjct: 117 VTPEYNLELKIDGLSLSLVYENGRLVQGSTRGNGNIGEDVTANVMTIKSIPHQLPEPLS- 175 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 +E RGE Y+ K F+ LN E A G +ANPRNAA+G LR+L+P R L F++ Sbjct: 176 -LEFRGECYMPKESFVKLNQEREAAGLSVFANPRNAAAGSLRQLDPQVTARRDLATFMYY 234 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + + ++ + Q L +MR LGF VN R + I Y E + R L Y IDG+ Sbjct: 235 VPEYQKLGVRTQAAALDRMRELGFSVNPHNRVVHNRQEITDYVEEYTAQRDQLSYGIDGI 294 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KV++ + LG + PRW I++KF ++ +T + DI +GRTG +TP A ++PV Sbjct: 295 VEKVNDLDTENALGNTVKVPRWEIAYKFPPEEQATVVRDIVWTVGRTGNVTPTAVMDPVQ 354 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G ++ A+LHN DY+ +DIR+GD V + +AG++IP++ + + +R Sbjct: 355 LAGTTVSRASLHNPDYL-----------SEKDIRLGDTVYLHKAGDIIPEISRVDLKKRP 403 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 D+QP+ P+ CP+C S +V + A RC + C AQ E L HF SR+A N Sbjct: 404 ADSQPYQVPTTCPVCGSDLVHLDDE------VALRCVNPM-CPAQIKEGLAHFASRNAMN 456 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+GLG + + + E + AD+++L Q + + FGD S NL SI Sbjct: 457 IDGLGPKIIQQLWDKE----LVHDVADLYSLTHDQLLT------LDKFGDKSAANLLTSI 506 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 RN S+ER +F LGIRHVGA+ AR + +++ S + V Sbjct: 507 ANSRNNSVERLLFGLGIRHVGAKAARLIMEHFQSLDRLLTA----------SADEVAAVD 556 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQ 659 +G I ++ ++ N + V+ L SE +++V TG L+ Sbjct: 557 GIGPTIGDSVQTYFANEQVKKLVDELRAVGVNFDYHGSVVPAATDSEWNGRRVVLTGKLE 616 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ R A+ ++ GA V+ +S+KTDI+I G GSKL KAQ LG+ + +E +F ++ Sbjct: 617 ELTRADAKHWLEAHGAKVTGSVSKKTDIVIAGTAAGSKLTKAQDLGITVWDEARFAQAMK 676 Query: 720 QY 721 + Sbjct: 677 EE 678 >gi|309812136|ref|ZP_07705894.1| DNA ligase (NAD+) [Dermacoccus sp. Ellin185] gi|308433823|gb|EFP57697.1| DNA ligase (NAD+) [Dermacoccus sp. Ellin185] Length = 770 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 213/720 (29%), Positives = 349/720 (48%), Gaps = 51/720 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + R + L ++I H YY P I D EYD L R + ++P+L P Sbjct: 22 PDAVRHRAAELTEQIDGHQFAYYVKDAPTISDGEYDELLRELQGVEESYPEL---RSPES 78 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + V H LSL+ ++ E+L ++ R+ R + + S + E K Sbjct: 79 PTQRVGGTYSTEFTAVDHVERMLSLDNAFSPEELAEWGDRVVR----EANTSFHYLCELK 134 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 IDG I + YE GK V RGDG +GEDV+ +R I IP L + P+++E+RGEV+ Sbjct: 135 IDGLAINLLYENGKLVRGVTRGDGRTGEDVTLNVRTIQGIPLELHGDDLPQLVEIRGEVF 194 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 +F ALN ++ G+ P+ANPRNAA+G LR+ +P R L VHG+G + Sbjct: 195 FPVKEFEALNASLVEEGKSPFANPRNAAAGSLRQKDPAKTAKRPLRMLVHGIGARTGFDI 254 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q E + + G P + +T + + R ++ ++IDG+V KVDE ++ Sbjct: 255 TRQSEAYELLADWGLPTSPYAEVLDTMDEVQKFVAHYGEHRHSVTHEIDGVVVKVDEIAV 314 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+ LG +R+PRW I++K+ ++ +T+LLDI++ +GRTG +TP ++PV + G+ ++ A Sbjct: 315 QRALGATSRAPRWAIAYKYPPEEVNTKLLDIEVNVGRTGRVTPFGMMQPVKVAGSTVSMA 374 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN +K + + +GD V++++AG+VIP++V +V R D + F P Sbjct: 375 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEIVGPVVEARTGDEREFVMP 423 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C + + + + RC G C +Q ERL SR AF+IE LG + Sbjct: 424 THCPACGTELAYER-----EGNKDIRCPNGRTCPSQLRERLFSLASRGAFDIEALGWEGA 478 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL------------GFGDVSVTNLY 539 +S + + +F L + + L Sbjct: 479 ISLLES----GVLTDESTLFDLTYDDLARVPLYTRVAKKSDPEAKVRDGRIVSATGEKLL 534 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 ++ + L R I +L IRHVG AR+LA + S D +L Sbjct: 535 ANLEVAKTQPLWRVIVALSIRHVGPTAARALATQFGSIDAIRDA----------DEATLA 584 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 VG +IA +I E++ + V ++++ + +V TG+L+ Sbjct: 585 ATDGVGAVIAHSIKEWFAVDWHENIVAGWAASGVRMEDERDESIEQTLAGLTIVATGSLE 644 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +E + G S +S+KTD +++G+N GSK KA++LG++I++E QF LL+ Sbjct: 645 NFTRDGVKEAIIARGGKASGSVSKKTDYVVLGENAGSKATKAEELGLRILDEAQFTRLLE 704 >gi|332291077|ref|YP_004429686.1| DNA ligase, NAD-dependent [Krokinobacter diaphorus 4H-3-7-5] gi|332169163|gb|AEE18418.1| DNA ligase, NAD-dependent [Krokinobacter diaphorus 4H-3-7-5] Length = 664 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 219/710 (30%), Positives = 360/710 (50%), Gaps = 51/710 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++IE+ ++ +L E+ H+ YY P I D ++D ++ +A+ A P+ +DP Sbjct: 1 MTIEE---QILALRNELQSHNHSYYVLDTPTISDFDFDQKLKQLEALEAAHPEF---DDP 54 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P +++GG + + + H SL+ ++ EDL + R+ + D + +T E Sbjct: 55 NSPTHRVGGAVTKNFETIVHENRMYSLDNSYSKEDLEDWEARVKKMV----DGEVNYTCE 110 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG I++ YE G+ + A RGDG G+DV+ I+ I ++P L + PE ++RGE+ Sbjct: 111 LKYDGASISLTYENGELLKAVTRGDGLQGDDVTTNIKTIKSVPLKLKGDYPEKFDIRGEI 170 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 + F A+N E +G + Y NPRN ASG L+ + ++ R + + + Sbjct: 171 VLPWEGFHAMNAEREELGFELYRNPRNTASGSLKLQDSAEVARRPLQCLLYNITGNNLGI 230 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q + LQK R GF V + A ++ + N R LPY+ DG+V KV+ Sbjct: 231 ATQMDSLQKARDWGFRVPEAAKLAKNIDEVLEFINHWDVARRDLPYETDGVVVKVNGLQQ 290 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG A++PRW +++KF +Q STRL +I Q+GRTG +TPVA LEPV + G + A Sbjct: 291 QEELGYTAKAPRWAMAYKFKAEQVSTRLREITYQVGRTGAITPVANLEPVELAGTTVKRA 350 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHN D I+ L DIR GD V V++ GE+IPK++ + + +R D++P ++ Sbjct: 351 SLHNADQIERL-----------DIREGDEVFVEKGGEIIPKIIAVDLTKRPADSEPTTYI 399 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C + +VR A H C + C Q + R++H++SR A +I+GLG + + Sbjct: 400 TECPECSTPLVRKEGE------AQHYCPNDMGCPTQIIGRIQHYISRKAMDIDGLGGETV 453 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 I AD++ L Q + + S NL + I E Sbjct: 454 ALLVNE----GLIVNYADLYELTVAQ------LLPLERMAQKSAENLVSGVQASVQIPFE 503 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + +F LGIR+VG +A+ LAK+Y S L+ V +G IA++ Sbjct: 504 KVLFGLGIRYVGETVAKKLAKHYKSIDAIISATE----------EELVAVDEIGSKIAES 553 Query: 612 IVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++ F+ +I +E L N S ++ V +G + + R++ ++ Sbjct: 554 VMAFFAKAEHITLIERLRSYGVQLEISAEKLANQSDKLAGYIFVVSGVFE-MPRNELKKL 612 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G VS+ +S KT ++ GD G SKLEKA+ LGV I++EE+FL L+ Sbjct: 613 IEDNGGKVSSSISSKTTYVVAGDKMGPSKLEKAESLGVTIISEEEFLNLV 662 >gi|257869253|ref|ZP_05648906.1| NAD-dependent DNA ligase [Enterococcus gallinarum EG2] gi|257803417|gb|EEV32239.1| NAD-dependent DNA ligase [Enterococcus gallinarum EG2] Length = 676 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 225/710 (31%), Positives = 371/710 (52%), Gaps = 53/710 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++ L ++ + YY +P + D YD L + + +P L + P Sbjct: 7 EVQQRAEELRTTLNQYAYEYYVKDQPSVEDYVYDRLYKELVQLETDYPQLV---TEDSPT 63 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + KV H IP SL +++ E++ F R+ + + ++ + E KID Sbjct: 64 QRVGGIVLPGFEKVIHDIPLYSLNDVFDKEEIIAFDARVQKALGR----AVDYVCELKID 119 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I+++YE G+FV A RGDG GE+++ ++ + +IP L + +EVRGE Y+ K Sbjct: 120 GLSISLKYENGRFVRGATRGDGTVGENITENLKTVKSIPLKLKEPVS--LEVRGECYMPK 177 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254 F+ LN G + +ANPRNAA+G LR+L+ +R L+ F++ L I A Q Sbjct: 178 ASFIRLNQVREEEGLEVFANPRNAAAGSLRQLDTRIAASRNLSTFLYTLADFGPIEAHDQ 237 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 + L ++ LGF N+ R T + +Y E RS LPY+IDG+V KV++FS Q Sbjct: 238 FSALDELDSLGFRTNHERRLCRTIDEVWAYIEEFHEKRSELPYEIDGVVIKVNDFSDQDT 297 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++PRW ++KF ++A T + +I+ +GRTG++TP A + PV + G ++ A+LH Sbjct: 298 LGFTVKAPRWAAAYKFPPEEAETTIEEIEWTVGRTGVVTPTAVMTPVRVAGTTVSRASLH 357 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N DYI+ +DIR+ D V++ +AG++IP+V +++ ++R ++P+ P+ C Sbjct: 358 NVDYIR-----------AKDIRLNDSVIIYKAGDIIPEVANVLTDKRSKASEPYPIPTHC 406 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC S +V A RC C AQ E L HFVSR+A NIEGLG + L+ Sbjct: 407 PICDSELVHLDEE------VALRCINPK-CPAQMKEGLSHFVSRNAMNIEGLGPRVLEQM 459 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 ++ + AD++ L Q + + + S N+ +I + S+ER I Sbjct: 460 YEK----HLVADVADLYYLTEEQLLT------LDKIKEKSANNILSAIEASKENSVERLI 509 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F LGIRHVG++ AR LA++Y + +N ++ D ++ + +G IA ++V Sbjct: 510 FGLGIRHVGSKAARILAEHYRNLRNLSKA----------DESEIVSLETIGQTIADSVVT 559 Query: 615 FYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++ N ++ L K + S + K +V TG L R +A+E Sbjct: 560 YFNNEEVHDLLDELEKAGVNFDYLGLKNEELSAIDSPFKGKTVVLTGKLTHFTREEAKER 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LG V+ +S+KTDI++ G+ GSKL KAQ LG+ + E Q + ++ Sbjct: 620 IENLGGKVTGSVSKKTDIVVAGEEAGSKLTKAQSLGITVWEENQMVAAIE 669 >gi|302554316|ref|ZP_07306658.1| DNA ligase, NAD-dependent [Streptomyces viridochromogenes DSM 40736] gi|302471934|gb|EFL35027.1| DNA ligase, NAD-dependent [Streptomyces viridochromogenes DSM 40736] Length = 731 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 219/737 (29%), Positives = 356/737 (48%), Gaps = 62/737 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +AR++ + L ++I H YY P++ D+E+D L R +A+ +P+L P+ Sbjct: 13 PAEAREKHARLAEQIEEHRFRYYVKDAPVVSDAEFDQLLRSLEALEDEYPEL---RTPDS 69 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+ G V H LSL+ +N E+L + RI R ++D + F E K Sbjct: 70 PTQKVAGAYATEFTAVEHRERMLSLDNTFNEEELAAWAERIARELGEQDYH---FLCELK 126 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG + + YE G+ AA RGDG +GED++ +R I IP L + P+++E+RGEVY Sbjct: 127 VDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPERLKGDRVPDLVEIRGEVY 186 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF- 250 F LN ++ G KP+ANPRNAA+G LR+ +P TR L+ VHG+G Sbjct: 187 FPMEKFQELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGALEGFTG 246 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + G P + R + G++ + R ++ ++IDG+V K+DE Sbjct: 247 LTRLSQAYDLLGTWGLPTSRHNRVVDGLEGMLEFIAHYGENRHSVEHEIDGVVVKLDEIP 306 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +R+PRW I++K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ + Sbjct: 307 LQGRLGSTSRAPRWAIAYKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVTVAGSEVEF 366 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN+D +K + + +GD V++++AG+VIP+++ + + R + F Sbjct: 367 ATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVM 415 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK-- 488 P+ CP C + + + RC C AQ ERL + R A +IE G Sbjct: 416 PAECPECGTALRPM-----KEGDVDLRCPNARTCPAQLRERLFYLAGRKALDIEHFGYVA 470 Query: 489 ----------------QQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTSTTK-----IE 525 + D F + D I+ L +R + + Sbjct: 471 AAALTAPLEPKDPPLVDEGDLFDLTIDQLLPIKAYVLDPDSGLPKRDPKTGEEKVATIFA 530 Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 N G + + ++I + L R I SL IRHVG A +LA+ + S + Q Sbjct: 531 NQEGNPRKNALAMLENIAAAKERPLARIITSLSIRHVGPVAAEALAREFRSIERIDQATE 590 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNV 643 L VG IA ++ +++ + + E Sbjct: 591 ----------EELAVTEGVGPTIAASLKQWFAEDWHREIIRKWKAAGVRMEAESTGEDEG 640 Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 +E +V TGTL+ R A+E + GA V+ +S+KT ++VGD+PGSK +KA Q Sbjct: 641 PRPLEGLTVVVTGTLEHFTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDSPGSKYDKAMQ 700 Query: 704 LGVKIMNEEQFLFLLQQ 720 L V ++NE+ F LL+Q Sbjct: 701 LKVPVLNEDGFGVLLEQ 717 >gi|118470314|ref|YP_886705.1| NAD-dependent DNA ligase LigA [Mycobacterium smegmatis str. MC2 155] gi|166216211|sp|A0QUW7|DNLJ_MYCS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|118171601|gb|ABK72497.1| DNA ligase, NAD-dependent [Mycobacterium smegmatis str. MC2 155] Length = 701 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 224/730 (30%), Positives = 352/730 (48%), Gaps = 47/730 (6%) Query: 1 MKKRQLIPIEALSIE----QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCD 56 M ++ +EA E R+ L E+ H YY PII D+E+D L R Sbjct: 1 MSEKATGEVEAELPEHPDADERRRWQELADEVREHQFRYYVKDAPIISDAEFDKLLRELQ 60 Query: 57 AIAHAFPDLARSEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY 115 A+ A P+L P+ P +GG H LSL+ +++ ++L + RI Sbjct: 61 ALEDAHPEL---RTPDSPTQLVGGAGFATEFAPAEHLERMLSLDNVFDSDELTAWAARIS 117 Query: 116 RFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR 175 F E KIDG +++ Y G+ A RGDG +GEDV+ R I IP Sbjct: 118 SETGDAAH----FLCELKIDGVALSLVYRDGRLERGATRGDGRTGEDVTLNARTIDDIPE 173 Query: 176 VLS----LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT- 230 L+ +P ++EVRGEV+ DF LN ++A G+ P+ANPRN+A+G LR+ NP Sbjct: 174 RLTPSDEFPVPAVLEVRGEVFFRVADFEELNAGLVAEGKPPFANPRNSAAGSLRQKNPAV 233 Query: 231 DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290 R L HG+G T ++ + + G PV+ + +T + Sbjct: 234 TARRKLRMICHGIGYTEGFTPASLHDAYRALGAWGLPVSEHTTKVSTVAEVAERIAYWGE 293 Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350 R + ++IDG+V KVDE +LQ++LG +R+PRW +++K+ ++A+T+LLDI + +GRTG Sbjct: 294 HRHDVEHEIDGVVVKVDEVALQRRLGATSRAPRWAVAYKYPPEEATTKLLDIRVNVGRTG 353 Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410 +TP A +EPV + G+ + ATLHN +K + + +GD V++++AG+VI Sbjct: 354 RVTPFAYMEPVKVAGSTVGLATLHNASEVKR-----------KGVLIGDTVVIRKAGDVI 402 Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 P+V+ +V+ R + F FP+ CP C + + + A RC +C AQ E Sbjct: 403 PEVLGPVVDLRDGTEREFEFPTHCPECGTELA-----PAKEGDADIRCPNSRSCPAQLRE 457 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530 RL H R AF+IEGLG + A I D+FTL T G Sbjct: 458 RLFHLAGRGAFDIEGLGYEAATALL----AAQVIPDEGDLFTLTADDLLRTELFTTKKGE 513 Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 + L ++ K + L R + +L IRHVG AR+LA + S + +A Sbjct: 514 LSANGKRLLANLTKAKEQPLWRVLVALSIRHVGPTAARALATEFGSLEAIEAASEEELAA 573 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650 VG IA A+ +++ + V+ + ++ +E Sbjct: 574 VE----------GVGPTIAAAVKDWFTVDWHRAIVDKWRAAGVRMADERDASIERTLEGL 623 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TG+L R +A+E + G + +S+KT ++ GD PGSK +KA +LGV +++ Sbjct: 624 SIVVTGSLAGFSRDQAKEAIIARGGKAAGSVSKKTAYVVAGDAPGSKYDKAVELGVPVLD 683 Query: 711 EEQFLFLLQQ 720 E+ F LL+Q Sbjct: 684 EDGFRRLLEQ 693 >gi|270296700|ref|ZP_06202899.1| DNA ligase, NAD-dependent [Bacteroides sp. D20] gi|270272687|gb|EFA18550.1| DNA ligase, NAD-dependent [Bacteroides sp. D20] Length = 665 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 229/707 (32%), Positives = 360/707 (50%), Gaps = 50/707 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++++ L E+ H+ YY + P I D E+D L R + P+ +D N P Sbjct: 3 VKEKIDQLRAELHQHNYNYYVLNAPEISDKEFDDLMRELQDLEKEHPEY---QDDNSPTM 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G ++N + +V H P LSL ++ ++ F R+ + + E K DG Sbjct: 60 RVGSDLNKNFTQVAHKYPMLSLGNTYSENEVTDFYERVKKAL----NEDFEICCELKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 T I++ YE GK V A RGDG G+DV+ ++ I TIP VL + P+ E+RGE+ + Sbjct: 116 TSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGDYPKSFEIRGEILMPWV 175 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN E A +ANPRNAASG L+ N T + E+ G YE Sbjct: 176 VFEELNREKEAREEPLFANPRNAASGTLKLQNSTIVASRKLDAYLYYLLGEELPCDGHYE 235 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 LQ GF + R+A++ + Y N + R LP DG+V K++ QK LG Sbjct: 236 NLQAAASWGFKTSEHTRKAHSLEEVFEYINYWDTERKNLPVATDGIVLKINSLRQQKNLG 295 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 FTAKSPRWAIAYKFQAERALTRLNRVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHNA 355 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCP 435 D I+GL D+ +GD V V++ GE+IPK+ + + R + F + CP Sbjct: 356 DIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSMLIGEKVKFITHCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S+++R AAH C AC Q +++HF+SR A NI+GLG + +D F+ Sbjct: 405 ECGSKLIRFEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + I+ AD++ L+ + + G+ S N+ + I + + ER +F Sbjct: 459 R----LGLIKDTADLYQLKTDDIKN------LERMGEKSAENIVNGIAASKEVPFERVLF 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG +A+ +AK + + D L + +G+ IAQ+I+ + Sbjct: 509 ALGIRFVGETVAKKIAKSFTDIEELENA----------DLEKLKNIDEIGEKIAQSIITY 558 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + NP N VE L + R E+++S ++ + +V +G R + +E + + Sbjct: 559 FSNPVNRELVERLKSNG-LQLHRTEEDLSGYTDKLAGQSIVISGVFTHHSRDEYKEMIEK 617 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G +S KT I+ G+N G +KLEKAQ+LGVKIM+E++FL L+ Sbjct: 618 NGGKNVGSISSKTSFILAGENMGPAKLEKAQKLGVKIMSEDEFLALI 664 >gi|304384418|ref|ZP_07366824.1| NAD-dependent DNA ligase LigA [Prevotella marshii DSM 16973] gi|304334516|gb|EFM00803.1| NAD-dependent DNA ligase LigA [Prevotella marshii DSM 16973] Length = 680 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 220/706 (31%), Positives = 348/706 (49%), Gaps = 48/706 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L +++ H+ YY + P I D E+D + + P+ +DPN P + Sbjct: 19 KARIEQLRRDLHAHNYKYYVLNAPTIGDQEFDEMMHELQRLETLHPEW---DDPNSPTQR 75 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G +++ +V H P LSL +N +D+ ++ + + D E K DG Sbjct: 76 VGSDLSTGFAQVKHRYPMLSLSNTYNEQDVAEWYESVRKGLN---DEDFEVCCEMKYDGL 132 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKN 196 I++ Y G+ V RGDG G+DV+A +R I IP VL P E+RGE+ + Sbjct: 133 SISLTYVDGRIVQGVTRGDGVQGDDVTANVRTIHAIPLVLPGTGYPHEFEIRGEILMPWA 192 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN E A +ANPRNAASG L+ L+P + + A G YE Sbjct: 193 VFEQLNKEREAAEEPLFANPRNAASGTLKSLDPALVATRRLDAYLYYLLGETLPADGHYE 252 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L GF ++ G+++ T I ++ S R LP DG+V KV+ Q+ LG Sbjct: 253 NLMAAASWGFKISAGMKKVRTLEEIYAFIRYWDSERKNLPVATDGIVLKVNSLRQQRALG 312 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW I++KF ++A TRL ++ Q+GRTG +TPVA +EPV + G + ATL+NE Sbjct: 313 FTAKSPRWAIAYKFKAERACTRLNEVTYQVGRTGAVTPVANMEPVQLAGTTVKRATLNNE 372 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+I+ D+ +GD V V++ GE+IPK+V + R DA P F + CP Sbjct: 373 DFIRSF-----------DLHLGDYVYVEKGGEIIPKIVGVDTTRRLADALPVHFITVCPE 421 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + +VR AAH C ++C Q R++HF++R A NIE LG + +D +++ Sbjct: 422 CGTSLVRYEGE------AAHYCPNDVSCPPQVKGRIEHFIARKAMNIESLGPETVDEYYR 475 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 IR AD++ ++ Q G + S + I + +N+ ER +F+ Sbjct: 476 R----GLIRNIADLYEIRTEQING-------DGSREKSAQRVVAGIAQSKNVPFERVVFA 524 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG AR LA+ + + + L+++ VG IA ++V ++ Sbjct: 525 LGIRFVGETSARLLARRFKNIDALMEA----------SPDELMQIEGVGMSIANSVVGYF 574 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 +NP N VE L ++ + K +V +G R + + + Q G Sbjct: 575 RNPVNREIVERLRGYGLQMALSADEMTGMTDRLAGKTVVISGVFSHHSREEYKRMIEQNG 634 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + +S KT I+ GD+ G SKLEKA++LGV +++EE FL +++ Sbjct: 635 GKNTGSISSKTSFILAGDHMGPSKLEKAEKLGVPVIDEETFLSMIE 680 >gi|116669859|ref|YP_830792.1| DNA ligase, NAD-dependent [Arthrobacter sp. FB24] gi|166215392|sp|A0JUH2|DNLJ_ARTS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116609968|gb|ABK02692.1| DNA ligase, NAD-dependent [Arthrobacter sp. FB24] Length = 790 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 217/735 (29%), Positives = 362/735 (49%), Gaps = 61/735 (8%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 R+E +L +E+ H YYQ PII D+E+D L RR + I P+L + + P Sbjct: 51 VREEYENLVEEVRKHRFAYYQEDAPIISDAEFDELFRRLETIEAMHPELVAN---DSPTQ 107 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS--IFFTLEPKI 134 ++GGE++ + V H SLE ++++E+L +I + K + + + E KI Sbjct: 108 EVGGEVSAAFAAVEHLQRMYSLEDVFSLEELESWIAKAEASVAKLGNGTAGPAWLTELKI 167 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYI 193 DG + + Y GK V AA RGDG++GED++ + I IP+ N P +EVRGEV+I Sbjct: 168 DGLAVNLLYRDGKLVRAATRGDGYTGEDITHNVLTIKEIPQQLTGGNYPAEMEVRGEVFI 227 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAK 252 F N+ +I G+ P ANPRNAA+G LR+ +P + R L +VHG+G + Sbjct: 228 PSKAFAEYNEALIEAGKAPLANPRNAAAGSLRQKDPAETAKRPLRMYVHGIGAREGLRTV 287 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q + +++ G P + + I+ + R +L ++IDG+V KVD+F+ Q Sbjct: 288 SQSDTYRQLAEWGLPTSPYFEVLGSLKDILDFIKRYGDKRHSLTHEIDGIVVKVDDFATQ 347 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG +R PRW +++K+ ++ T+LLDI + +GRTG +TP +EPV + G+ + AT Sbjct: 348 RALGYTSRVPRWAVAYKYPPEEVHTKLLDIAVNVGRTGRVTPFGIMEPVKVAGSTVGMAT 407 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---PDAQPFS 429 LHN+D +K + +++GD V++++AG+VIP++V ++ R P + F Sbjct: 408 LHNQDVVK-----------AKGVKIGDIVVLRKAGDVIPEIVGPVLALRDQQDPPVRDFV 456 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + + + RC +C AQ ER+ H SR AF+IE LG + Sbjct: 457 MPTECPACGTPLA-----PGKEGDVDIRCPNSRSCPAQLRERVFHVASRGAFDIEALGWE 511 Query: 490 QLDFFFKSEDP-AFSIRIPADIFTLQRRQ------------------------QTSTTKI 524 + +P + A++F L R T Sbjct: 512 AAIALTQPAEPVTPPLTSEANLFRLTREDLADVRIRREKRSKGVATGEFELVPYFYTKGT 571 Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 + L+ + K ++ L R + +L IRHVG +R+LA + S + Sbjct: 572 AKSPSKPTATTEKLFTELEKAKSQPLWRVLVALSIRHVGPRASRALATAFGSMDAIREAS 631 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 L V VG +IA A+ E++ + V+ ++ +++ Sbjct: 632 E----------EELAHVDGVGPVIAAALKEWFAEDWHREIVDTWAEDGVRMEDEQDESTP 681 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 +E +V TG+L+ R +A+E + G S +S+ T ++ G+N G+KL+KA+QL Sbjct: 682 RTLEGLTVVVTGSLEGFSRDEAKEAILIRGGKASGSVSKNTSYVVAGENAGTKLDKAEQL 741 Query: 705 GVKIMNEEQFLFLLQ 719 GV +++E+ F LL Sbjct: 742 GVPVLDEDGFRALLA 756 >gi|328954073|ref|YP_004371407.1| DNA ligase [Desulfobacca acetoxidans DSM 11109] gi|328454397|gb|AEB10226.1| DNA ligase [Desulfobacca acetoxidans DSM 11109] Length = 676 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 239/709 (33%), Positives = 380/709 (53%), Gaps = 48/709 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + L +I YHD YY P I D+EYD L R + + P+ P Sbjct: 10 EIAARAARLRDQIHYHDYRYYVLDDPEISDAEYDLLFRELERLEEE---YPELVTPDSPT 66 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG VTH P LSLE ++ ++++F R+ RF ++ + LEPK+D Sbjct: 67 QRVGGGPAEKFESVTHRQPMLSLENAFSEGEVQEFEPRLKRFLHQQA--EFDYVLEPKMD 124 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVY 192 G + + YE G A RGDGH GE+V+ +R I TIP R + P +EVRGEVY Sbjct: 125 GVAVNLTYEDGLLAIGATRGDGHRGENVTQNLRTIKTIPLVLRRETTPAPAFLEVRGEVY 184 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 I +F LN A G+ +ANPRNAA+G LR+L+P R L + +G+G+ + Sbjct: 185 IELAEFKKLNAAREAQGQPAFANPRNAAAGSLRQLDPAVTAGRPLKIYCYGIGEVAGREF 244 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +E++Q ++ G VN V + V+Y++ ++ +R LPY+IDG+V KVD L Sbjct: 245 SSHWEVMQTLKTWGLRVNPYVDRCQGIEAAVAYHHRLEGLRHGLPYEIDGVVIKVDSLEL 304 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG ++RSPRW +++KFA QA+T++ I +Q+GRTG +TP A + PV +GG ++ A Sbjct: 305 QTRLGIKSRSPRWALAYKFAATQATTQVRKIIVQVGRTGAVTPTAIMAPVEVGGVTVSRA 364 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHNED + +D+R GD VL++RAG+VIP+VV +I + R +PF P Sbjct: 365 TLHNEDEVAR-----------KDVREGDWVLIQRAGDVIPEVVKVITSRRTGREKPFKMP 413 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C + +VR A RC CSAQ ++HF S+ A +I+GLG++ + Sbjct: 414 ERCPVCDTPLVRPQGE------AVTRCPNP-DCSAQLKRAIRHFASKGAMDIDGLGEKII 466 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + ++ AD++ LQ + F + S N+ +I + SL Sbjct: 467 EQLIDQ----GLVQDVADLYRLQASDL------LPLERFAEKSAQNIVQAIAGSKKPSLG 516 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RFI++LGIR+VG A LA+++ + L+ + +G +A + Sbjct: 517 RFIYALGIRYVGEATANLLARHFQTLNALKAA----------AVEDLLLIEGIGPQVAAS 566 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 I +++QNP+N + LL+ + + +++ + + VFTG LQ++ R +A+ VT Sbjct: 567 IRDYFQNPKNQALLAKLLQA-NLQPQAATQVLTTPLAGQTFVFTGRLQQLSRDEAKALVT 625 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G VS+ +S KTD ++VG +PG+K +A +LG+ I++E F L+ + Sbjct: 626 AQGGKVSSSVSAKTDYLVVGKDPGTKYAQALELGLTILDEAGFAQLIGR 674 >gi|300783591|ref|YP_003763882.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32] gi|299793105|gb|ADJ43480.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32] Length = 726 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 218/718 (30%), Positives = 348/718 (48%), Gaps = 43/718 (5%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 R+ S+L +E+ H YY PII D ++D L + A P L P Sbjct: 27 PADVRERHSALAEELRDHQFRYYVLDSPIISDGQFDELLGELQRLEDAHPALV---TPES 83 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + H LSL+ ++ ++ ++ R+ + + F E K Sbjct: 84 PTQRVGGTFSTEFTAHDHLERMLSLDNVFAEDEFLAWVERVEKEVGR-----TEFLAELK 138 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRG 189 IDG I + YE G A RGDG +GEDV+ +R + +P+ L+ P ++EVRG Sbjct: 139 IDGLAINLLYENGHLTRALTRGDGRTGEDVTLNVRTLDQVPQTLTGTDQFPVPALVEVRG 198 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EV+ DFL LN +M+ G+ PYANPRN A+G LR+ +P R L HGLGK + Sbjct: 199 EVFFRVEDFLELNAKMVEAGKPPYANPRNTAAGSLRQKDPKITRERRLRLICHGLGKRAG 258 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + Q E + G PV+ + + + ++ R ++IDG+V KVD+ Sbjct: 259 FEPQRQSEAYDALAAWGLPVSPHSKVLTSADELTAHIAYWGEHRHDAEHEIDGVVIKVDQ 318 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ++LG +R+PRW I++K+ ++A T LLDI + +GRTG +TP A EPV + G+ + Sbjct: 319 VALQRRLGTTSRAPRWAIAYKYPPEEAITTLLDIQVGVGRTGRVTPFAVTEPVTVAGSTV 378 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHN++ +K + + +GDR+++++AG+VIP+V+ +V+ R D + F Sbjct: 379 SRATLHNQEEVKR-----------KGVLIGDRIVIRKAGDVIPEVLGPVVDARTGDEREF 427 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C + + + RC C AQ ERL H R AF+IE LG Sbjct: 428 VMPTHCPECGTELAYQ-----KEGDKDIRCPNTRFCPAQLRERLFHLAGRGAFDIEVLGY 482 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + A + D+F L G + L +++ ++ Sbjct: 483 EAAVALLD----ARVVADEGDVFDLNEDSLAEVELFRTKAGELSANARKLLSNLDAAKDR 538 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L + + +L IRHVG A++LA+ + S + Q L V VG I Sbjct: 539 PLWKVLVALSIRHVGPTAAQALAREFGSIERIEQATE----------EELSAVDGVGPTI 588 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A A E++ + VE + ++++ +E +V TG+L R +A+E Sbjct: 589 AHATQEWFDVAWHREIVEKWRRAGVRMEEARDESIPRHLEGLSIVVTGSLDGFSRDEAKE 648 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 V G + +S+KT ++VGD+PGSK +KA QL V +++E F LL+Q R Sbjct: 649 VVMARGGKAAGSVSKKTAFVVVGDSPGSKYDKAVQLKVPVLDEAGFRVLLEQGPDAAR 706 >gi|34540958|ref|NP_905437.1| DNA ligase, NAD-dependent [Porphyromonas gingivalis W83] gi|81417286|sp|Q7MV47|DNLJ_PORGI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|34397273|gb|AAQ66336.1| DNA ligase, NAD-dependent [Porphyromonas gingivalis W83] Length = 669 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 217/704 (30%), Positives = 347/704 (49%), Gaps = 47/704 (6%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 + L + + H+ YY S P I D EYDA+ ++ + + +P+ + P+ P +++G Sbjct: 10 RIEELRRILREHEYRYYVLSSPTIDDFEYDAMMKQLEELEREYPEW---DSPDSPTHRVG 66 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + V H P LSL +N +++ F R+ Q E K DG I Sbjct: 67 SDKTEGFASVRHDRPMLSLSNTYNYDEIGDFYRRVSEGLQ---GAPFEIVAELKFDGLSI 123 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII-EVRGEVYISKNDF 198 ++ YE G V A RGDG G+DV+A +R I ++P L + + EVRGE+ + +F Sbjct: 124 SLIYEDGMLVRAVTRGDGIMGDDVTANVRTIRSVPLRLRGDDYPRMLEVRGEILLPFKEF 183 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N + A G +ANPRNAASG +++L+P + + E A+ Y+ L Sbjct: 184 DRINAQREAEGEPLFANPRNAASGTIKQLDPHIVAGRNLDAYFYYLYSDEPLAENHYDRL 243 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + R GF V++ V + + ++ + + R TLP DG+V KV+ + Q LG Sbjct: 244 MQARQWGFKVSDAVTLCCSKEEVYAFIDRFDTERLTLPVATDGIVLKVNAPAQQDLLGFT 303 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 A+SPRW I++K+ ++ TRL + Q+GRTG +TPVA L+PV I G ++ A+LHN D+ Sbjct: 304 AKSPRWAIAYKYQAERVRTRLQHVSYQVGRTGAVTPVANLDPVLISGTVVRRASLHNADF 363 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +D+ GD V V++ GE+IPK+V + + R D +P F CP C Sbjct: 364 I-----------AEKDLHEGDFVYVEKGGEIIPKIVGVDTDARSIDGRPIVFTVLCPDCA 412 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 + +VR+ AA+ C C QQ RL+H+ R +I + + Sbjct: 413 TPLVREQGE------AAYYCPNAEGCPQQQKGRLEHYCGRKTADINIGPET-----IELL 461 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 IR AD + L Q + + GF + L DSI + + +F LG Sbjct: 462 YSRNMIRNVADFYALTEEQLLT------LPGFKKRAAAKLLDSIEASKARPYQAILFGLG 515 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IR VG +A+ LA Y S A + L+++ +G+ IA A++ F+ Sbjct: 516 IRFVGETVAKKLAAVYPSIDALAAATS----------EELVQIDEIGERIAAAVLHFFSL 565 Query: 619 PRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 +N +E L L VS VS+ + K +V +GT +K R + + V G + Sbjct: 566 RQNRELIERLRLAGVSLEAETVSVAVSNRLAGKTVVISGTFEKRSRDEYKAMVEDNGGRM 625 Query: 678 SAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 + +S KT I+ G + G SK EKA++LGV++M+EE+FL L+++ Sbjct: 626 AGSVSSKTSFILAGSDMGPSKREKAEKLGVRLMSEEEFLRLIEE 669 >gi|313674932|ref|YP_004052928.1| DNA ligase, nad-dependent [Marivirga tractuosa DSM 4126] gi|312941630|gb|ADR20820.1| DNA ligase, NAD-dependent [Marivirga tractuosa DSM 4126] Length = 671 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 216/714 (30%), Positives = 364/714 (50%), Gaps = 47/714 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + A +++ L +++ Y++ YYQ S I D E+D + + + FPDL S Sbjct: 1 MEKKAAEQKIQELSEKLHYYNYKYYQESVSEISDYEFDMMLKELIELEEKFPDLKTS--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ + V H IP LSL ++ E+L F R+ R ++ S + E Sbjct: 58 DSPSQRVGGDITKNFETVEHKIPMLSLGNTYSKEELDDFDGRVKRGLGEE---SYEYFCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190 K DG I++ YE GK + RGDG G+D++ + I TIP + PE E RGE Sbjct: 115 LKFDGVAISLHYENGKLIRGVTRGDGSKGDDITNNAKTIRTIPLKVRGEQFPEYFEARGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 V++ + F +N E G ANPRNAASG L+ + + + ++ Sbjct: 175 VFLPREAFNEINREREENGEALLANPRNAASGTLKMQDSGVVAKRKLDCFLYSYAGEDLP 234 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E ++++ GF V+ ++ + + ++ NE + R +LP D DG+V KV+ Sbjct: 235 IDSHEEGIKQLEKFGFNVSQTYKKCKNINEVFNFINEWEEKRHSLPVDTDGIVIKVNSLG 294 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG A+SPRW I++K+ + ++T L +I Q+GRTG +TPVA LEPV++ G + Sbjct: 295 QQEQLGFTAKSPRWAIAYKYKAESSTTILKEITYQVGRTGAVTPVANLEPVSLAGTTVKR 354 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN + I L D+RVGD V V++ GE+IPK+ + + +R + + Sbjct: 355 ASLHNANEIARL-----------DLRVGDTVHVEKGGEIIPKITGVDLTKRDLGSNEVEY 403 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 CP C + +VR A H C C Q ++H++ R A +I+ +G++ Sbjct: 404 IQECPECGTELVRAEGE------AVHYCPNKKGCPPQIKGSIEHYIQRKAADIDSMGERT 457 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + ++ ++ AD++ L+ + GF D+S NL I + + I Sbjct: 458 IHLLYEK----GLVKNVADLYDLKYEDVF------ELEGFKDLSTQNLLKGIEESKQIPF 507 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E +F LGIR VG +A L ++ + N A+ + LI VP +G+ IAQ Sbjct: 508 ENILFGLGIRFVGKTVAEKLGAHFKNIDNLAKA----------SFDELIEVPEIGERIAQ 557 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++VE++ + NI +E L + + + +ENK LV +G + R + +E Sbjct: 558 SVVEYFHDEDNIKLIERLKSAGLQFEIQETVIEQKGNVLENKSLVVSGVFEHYGRDEIKE 617 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQY 721 + Q G V + +S K DI++ G+N G +KL+KA++LGVKI++E +F L+++ Sbjct: 618 VIKQYGGKVVSAISGKVDILVAGENMGPAKLQKAEKLGVKIIDEVEFRSLIKEN 671 >gi|282896837|ref|ZP_06304843.1| NAD-dependent DNA ligase [Raphidiopsis brookii D9] gi|281198246|gb|EFA73136.1| NAD-dependent DNA ligase [Raphidiopsis brookii D9] Length = 692 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 225/712 (31%), Positives = 360/712 (50%), Gaps = 53/712 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L + + YY PI+ D+ YD L R + +P+L S + P ++ Sbjct: 12 QRVEELRKLLQQAGYAYYVLDSPIMEDTIYDRLYRELQELEKKYPNLVTS---DSPTQRV 68 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NSIFFTLEPKIDGT 137 G V H+IP SLE +N+E+L+ + R R + + E KIDG Sbjct: 69 GERPATHFSSVRHNIPLYSLENAFNVEELQTWNQRWIRHLPTPHSLTKVEYVAELKIDGA 128 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGEVYIS 194 + + Y+ G V A RGDG +GED++ +R I +IP L+ + E +EVRGEV++ Sbjct: 129 ALALTYQNGVLVKGATRGDGITGEDITPNVRTIRSIPLRLNFDGIEPIEKVEVRGEVFLP 188 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL---GKTSEIF 250 F +N + G + +ANPRNA +G LR+L+P R L+FF + L G Sbjct: 189 LEVFKQINQKRQKAGEQLFANPRNAVAGTLRQLDPRVVAQRQLDFFAYTLHIPGLDDRSI 248 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A Q+E L+ ++ LGF V+ + ++ + YY + R PY DG+V K++ F Sbjct: 249 ANTQWESLELLQKLGFRVDVNHKLCSSVDEVAQYYQYWNTERLNSPYMTDGVVVKLNAFK 308 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG + PRW I+ K+A ++A TR+ +I + +GRTG LTP+A + PV + G ++ Sbjct: 309 LQEQLGFTQKFPRWAIALKYAAEEAPTRVENIMVNVGRTGALTPLAEMRPVQLAGTTVSR 368 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D ++ L DIR+GD V+V++AGE+IP+VV +I R + +PF Sbjct: 369 ATLHNSDRLREL-----------DIRIGDTVIVRKAGEIIPEVVRVIKELRPNETKPFIM 417 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C VVR+L RC +C A ++H+VSRDA +I+G+G++ Sbjct: 418 PTNCPVCGQPVVRELGE------VVTRCVNA-SCPAILKGEIEHWVSRDALDIKGIGEKL 470 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + + AD+++L Q + G S L I + +N Sbjct: 471 VHQLVDK----GLVHSVADLYSLTEEQLCG------LERMGKRSAEKLVQVIRESKNQPW 520 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R ++ LGIRHVG A+ L++ + + A + + V +G IAQ Sbjct: 521 SRVLYGLGIRHVGNVNAQLLSEKFTTVDKLATAKQS----------DIEGVYGIGVEIAQ 570 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH----EKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++ +++ N + L ++ NK V TGTL ++R +A Sbjct: 571 SVYQWFHISANQNLITRLQSIGLQFDQTQLIYNAAATKPDLVNKIFVITGTLPTLKRDEA 630 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + + GA V+ LS+KTD ++VGD GSKLEKA+ LG+K ++E + L +L Sbjct: 631 KSLIQKAGAKVTDSLSKKTDFVVVGDKAGSKLEKARALGIKQLDEAELLEML 682 >gi|253565642|ref|ZP_04843097.1| DNA ligase [Bacteroides sp. 3_2_5] gi|251945921|gb|EES86328.1| DNA ligase [Bacteroides sp. 3_2_5] Length = 665 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 223/706 (31%), Positives = 348/706 (49%), Gaps = 48/706 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++++ L ++ H+ YY + P I D E+D L R + P+ D N P Sbjct: 3 VKEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEYK---DENSPTM 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G ++N + +V H P LSL ++ ++ F R+ + + E K DG Sbjct: 60 RVGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRVRKAL----NEDFEICCEMKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195 T I++ YE GK + A RGDG G+DV+ ++ I +IP VL N PE+ E+RGE+ + Sbjct: 116 TSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPEVFEIRGEILMPW 175 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 F ALN E A +ANPRNAASG L+ N + + G Y Sbjct: 176 EVFEALNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPTDGHY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ+ GF ++ +R+ T + + N R L DG+V KV+ Q+ L Sbjct: 236 ENLQEAAKWGFKISPLMRKCQTLQEVFDFINYWDVERKNLNVATDGIVLKVNSLKQQRNL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+GL D+ +GD V V++ GE+IPK+ + + R + F + CP Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDTSVRFMIGEKVKFITHCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S+++R AAH C AC Q +++HF+SR A NI+GLG + +D F+ Sbjct: 405 ECGSKLIRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + I AD++ L + GD S N+ I + + + ER IF Sbjct: 459 R----LGLIHDTADLYRLTTDDIRG------LDRMGDKSAENIIKGIMQSKEVPFERVIF 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG +A+ +AK + + D +LI + +G+ IA++I+ + Sbjct: 509 ALGIRFVGETVAKKIAKSFKDIEELENA----------DLETLINIDEIGEKIARSILNY 558 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + N N V L E ++ + +V +G R + ++ + + Sbjct: 559 FANESNRKLVGRLKTAGLQLYRPEEDLSGHTDKLAGQSIVISGVFTHHSRDEYKDLIEKH 618 Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G +S KT I+ GDN G +KLEKA +LG+KIMNEE+FL L+ Sbjct: 619 GGKNVGSISSKTSFILAGDNMGPAKLEKASKLGIKIMNEEEFLKLI 664 >gi|313884866|ref|ZP_07818618.1| DNA ligase (NAD+) [Eremococcus coleocola ACS-139-V-Col8] gi|312619557|gb|EFR30994.1| DNA ligase (NAD+) [Eremococcus coleocola ACS-139-V-Col8] Length = 673 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 225/720 (31%), Positives = 375/720 (52%), Gaps = 57/720 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ ++++ L+++++ YY KP D+ YD + R+ + + PD Sbjct: 4 IKEMTLDD----YQDLKEQLNQLAYAYYVLDKPQAEDAVYDQMYRQLENLEKIHPDWL-- 57 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ P +IG ++ KVTH P SL ++ E++ FI R+ + F Sbjct: 58 -SPDSPTQRIGDQVLAGFEKVTHLEPLYSLANAFSEEEVVAFIDRVQNQVS----GPLTF 112 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 E KIDG I++RYE G FV A RGDG GE++++ +R I +P L + E R Sbjct: 113 MCECKIDGLSISLRYEDGLFVQGATRGDGRVGENITSNLRTIKALPLRLQKPVSG--EFR 170 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS 247 GE Y+ K F LN+ G P+ANPRNAA+G LR++NP + R LN F++G Sbjct: 171 GEAYMPKAVFQKLNESRDLAGLAPFANPRNAAAGGLRQINPKEAAKRQLNIFMYGAVYNE 230 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + Q ++ ++ LG N R + I++Y E+ R+ LPY+IDG+V KV+ Sbjct: 231 DYQIDSQAQLFDFLQELGLRTNPLRRLCHNKEEIMAYIQEVGQKRADLPYEIDGVVIKVN 290 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + Q LG ++PRW I++KF + +TRL +++ +GRTG++TP A ++PV + G Sbjct: 291 QVAQQSSLGYTVKAPRWAIAYKFKAQVEATRLKEVEWTVGRTGVVTPTAVMDPVFLAGTT 350 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + A+LHN D IK L D+R+GD+V++ +AG++IP+++++ +++R D+ P Sbjct: 351 VQRASLHNIDLIKAL-----------DVRIGDQVVIHKAGDIIPEIIEVNLDQRPADSTP 399 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P CP+C + R+ A RC L C AQ+L ++ HF SR A NI GLG Sbjct: 400 LVIPETCPVCYHPLEREAGE------VALRCLNPL-CPAQRLAQISHFGSRGAMNISGLG 452 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ + + I+ AD++ L + + + + S L +I + Sbjct: 453 EKVVAALLDHD----MIQNVADLYHL------TLADLLKLPNTKEKSAQKLLQAIEASKT 502 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SLER +F GIRHVGA+ AR +A+ + + + +Q + + +G I Sbjct: 503 NSLERLLFGFGIRHVGAKAARLVAQKFDTIEALSQASE----------EEITNIDGIGTI 552 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN-----KKLVFTGTLQKIQ 662 IA+++V+F Q+ + ++ L K + ++N K +V TGT+ Sbjct: 553 IAKSLVDFLQDEASHALIQDLTNMGVNMTYTGPKVNQTSLDNDFWLDKTVVLTGTMASYS 612 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 R +A+E + LGA V +S+ TD ++ G + GSKL KA+QLGV I++E +FL + + + Sbjct: 613 RSQAKEILQGLGAKVIGSVSKNTDYLVAGQDAGSKLSKAEQLGVTILDESEFLAQINEES 672 >gi|317056400|ref|YP_004104867.1| DNA ligase, NAD-dependent [Ruminococcus albus 7] gi|315448669|gb|ADU22233.1| DNA ligase, NAD-dependent [Ruminococcus albus 7] Length = 659 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 221/710 (31%), Positives = 370/710 (52%), Gaps = 53/710 (7%) Query: 12 LSIEQ-ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 +S ++ A+K + L + ++YH YY + I D EYD L+ + A PDL R Sbjct: 1 MSEKESAKKRIDELVEILNYHSRLYYVEDRNEISDYEYDMLQNELKKLEAANPDLIRK-- 58 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++GGE KVTH + SL+ +++ +++R+F+ R+ F + Sbjct: 59 -DSPTQRVGGEAVSGFEKVTHKVQMGSLQDVFSFDEVREFVDRVRESVS-----DPVFVV 112 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 EPKIDG +++ Y G+ + RGDG GE+V+ ++ + +IP + +IEVRGE Sbjct: 113 EPKIDGLSVSLEYHDGQLTVGSTRGDGFVGENVTENLKTVRSIPV-TIDSSLPMIEVRGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEI 249 VY+ +N FL+L E +P+ NPRNAA+G LR+ +P R L+ FV + + Sbjct: 172 VYMPRNVFLSLIKEQEDNDEQPFKNPRNAAAGSLRQKDPKIAAKRKLDIFVFNVQQVDGK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + L ++ LGF +Q +T I++ NE+ R LPYDIDG+V KVD+F Sbjct: 232 ELTAHKQSLDYLKELGFKTVPDYKQVSTSDEIIARINEIGESRFDLPYDIDGVVIKVDDF 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + LG A+ P+W +++KF ++ +T+L+DI++ +GRTG +TPVA EPV + G ++ Sbjct: 292 KHRDILGATAKVPKWAVAYKFPPEEKNTKLIDIELNVGRTGAVTPVAVFEPVFLAGTQVS 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN+D + ++I +GD + V++AG++IP+V+ + F Sbjct: 352 RATLHNQD-----------LIIEKNINIGDTIRVRKAGDIIPEVLGSVEKN---SEGAFM 397 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP+C +++V+ + AA RC C AQ + HF S+ A NI+GLG Q Sbjct: 398 LPDECPVCHTKLVKSEDE------AAVRCPNV-ECPAQIFRSIVHFASKGAMNIDGLGPQ 450 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + ++ I AD++ ++ + + F + S NL +I K R++S Sbjct: 451 IVRLLLDNK----LITSVADLYNIKEDDLLA------LDSFKEKSAHNLVTAIEKSRSVS 500 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L+R IF LGIR++G A+ L + + + + G ++A Sbjct: 501 LDRLIFGLGIRNIGQASAKLLCAKFGGLDSIMSAT----------AEEISGIDGFGVVMA 550 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 Q++ + I ++ L KE + + K V TGTL ++R+ A+E Sbjct: 551 QSVYNAFHEEHMIALIQRL-KECGVNTEYEKVQQDDRFAGKTFVLTGTLPTLKRNDAKEL 609 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + G S +S+KTD ++ G+ GSKL KAQ+LGVKI++EE+F+ +++ Sbjct: 610 IEKFGGKASGSVSKKTDFVLAGEEAGSKLTKAQELGVKIISEEEFMEMIK 659 >gi|150025890|ref|YP_001296716.1| DNA ligase (NAD+) [Flavobacterium psychrophilum JIP02/86] gi|166215404|sp|A6H0N9|DNLJ_FLAPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|149772431|emb|CAL43913.1| DNA ligase (NAD+) [Flavobacterium psychrophilum JIP02/86] Length = 666 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 225/703 (32%), Positives = 360/703 (51%), Gaps = 46/703 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ SL +E++ H+ YY P I D ++D ++ P+ D N P ++ Sbjct: 5 QKIQSLREELNLHNYNYYVLDNPTISDYDFDVKLTDLQSLEKNNPEYF---DENSPTQRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + + + H SL+ ++ EDL + RI + D + + E K DG Sbjct: 62 GGTITKNFETLKHDYRMYSLDNSYSKEDLLDWENRIQKALG---DVPLEYICELKYDGAS 118 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I+I YE G+ V A RGDG G+DV+ I+ I +P L + PE ++RGE+ + F Sbjct: 119 ISITYENGRLVRAVTRGDGFQGDDVTNNIKTIKAVPIKLKGDFPEKFDIRGEIILPFAGF 178 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N ++I +G PY+NPRN ASG L+ + ++ + + + + + +E L Sbjct: 179 EKMNQDLIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLDCLLYSLIGNNLPFQSHFEGL 238 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 +K R GF V A + + + N R TLPY+ DG+V KV++ LQ +LG Sbjct: 239 EKARLWGFKVPKQSHLAKNMNEVFDFINIWDKNRHTLPYETDGVVIKVNDLHLQDELGYT 298 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 A+SPRW I++KF +Q T+L I Q+GRTG +TPVA LEPV + G ++ A+LHN D Sbjct: 299 AKSPRWAIAYKFKSEQVFTQLNSISYQVGRTGSITPVANLEPVQLAGTIVKRASLHNADQ 358 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I+ L DIR+ D V V++ GE+IPK++ + + +R ++Q ++ + CP CQ Sbjct: 359 IEKL-----------DIRINDTVFVEKGGEIIPKIIGVDLQKRPSNSQKTAYITHCPECQ 407 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 +++ R A H C C Q + R++H++SR A +IEGLG + + + + Sbjct: 408 TKLERKEGE------ANHYCPNFYGCRPQIIGRIQHYISRKAMDIEGLGGETVALLYDN- 460 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 ++ AD++ L Q I + S NL + +NI E +F+LG Sbjct: 461 ---GLVKNYADLYDLSVEQ------ILPLERMAQKSAENLVQGVQNSKNIPFENVLFALG 511 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IR+VG +A+ LAK+Y + A + L L+ V +GD IAQ++VEF+ N Sbjct: 512 IRYVGETVAKKLAKHYKNIDAIANA----------NLLELVMVDEIGDKIAQSVVEFFDN 561 Query: 619 PRNICAVEALLKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 NI +E L E N VS+++ K V +G + R + ++ + G Sbjct: 562 QENISVLERLKNNGIQLAISEENNTVVSNKLLGKIFVVSGVFEIYSRDELKKAIEDNGGK 621 Query: 677 VSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 V + +S KT+ +I G N G +KLEKA QL V I++E F LL Sbjct: 622 VGSSISAKTNYVIAGQNMGPAKLEKANQLKVSIISESDFSALL 664 >gi|227548037|ref|ZP_03978086.1| DNA ligase (NAD(+)) [Corynebacterium lipophiloflavum DSM 44291] gi|227079891|gb|EEI17854.1| DNA ligase (NAD(+)) [Corynebacterium lipophiloflavum DSM 44291] Length = 689 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 228/712 (32%), Positives = 362/712 (50%), Gaps = 46/712 (6%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + +S ++ L ++ +H D YY + +I D+E+D L A A P+LA Sbjct: 18 VSDIS-ADLHRQWDDLASQVRHHRDLYYN-GQQVISDAEFDKLFNNLVAFEEAHPELAV- 74 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P P ++G ++ + VTH +SL+ +++ E+L ++ + + Sbjct: 75 --PESPTKEVGAPVSSAFADVTHLERMMSLDNVFSAEELADWLAKT----------PGPY 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 E KIDG I + YE G+ V AA RGDG GED++A + IP IP L+ + PE++EVR Sbjct: 123 LTELKIDGLSIDLVYENGELVRAATRGDGRVGEDITANAKVIPDIPHRLTGDFPELLEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247 GEV+I DF LN++ I G KP+ANPRN A+G LR+ NP D R L HG+G Sbjct: 183 GEVFIRPEDFPELNEQRIKEGGKPFANPRNTAAGGLRQKNPEDVKKRRLRMICHGIGARE 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 Q+E +K+ G PV+ R+A T + + + R +++DG+V KVD Sbjct: 243 GFSPASQFEAYEKLAEWGLPVSEYTRRAETANEVQESVDYWAEHRHDAIHEMDGVVIKVD 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + Q+ LG +R+PRW I++K+ ++ +T+LLDI++ +GRTG TP A LEPV + G+ Sbjct: 303 SVATQRSLGATSRAPRWAIAYKYPPEEVTTKLLDIEVSVGRTGRATPFAVLEPVFVSGST 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN+ +K + + +GD V++++AGE+IP+V+ + + R + Sbjct: 363 VSLATLHNQHEVKR-----------KGVLIGDTVVIRKAGEIIPEVLGPVADLRDGSERE 411 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F +P CP C + + + A RC +C AQ +RLK+ SR AF+IE LG Sbjct: 412 FIYPKDCPACGTELA-----PAKEGDADWRCPNTRSCPAQLSQRLKYLASRGAFDIEALG 466 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ S + D+F L ++ G + + L +++ R Sbjct: 467 EKGAIDLIDS----GVLVDEGDLFDLTEEDLKKSSAYTTKAGNVNAAGKKLLANLDTARE 522 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 L R + +L IRHVG AR+LA Y S Q L VG + Sbjct: 523 RELWRVLVALSIRHVGPTAARALAARYASMQALIDAP----------VADLADTDGVGLV 572 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 IAQ+ +++ + V+ K + +E +V TGTL+ R +A+ Sbjct: 573 IAQSFKDWFTVDWHRDIVDKWAKAGVRMVDDTTDAAPQTLEGLTVVVTGTLENFSRDEAK 632 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 E + G + +S+KT ++VG+N GSK +KA++LGV I+NEEQF LLQ Sbjct: 633 EAILSRGGKAAGSVSKKTSYVVVGENAGSKEDKARELGVPILNEEQFEQLLQ 684 >gi|255658313|ref|ZP_05403722.1| DNA ligase, NAD-dependent [Mitsuokella multacida DSM 20544] gi|260849632|gb|EEX69639.1| DNA ligase, NAD-dependent [Mitsuokella multacida DSM 20544] Length = 675 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 214/711 (30%), Positives = 349/711 (49%), Gaps = 47/711 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 SI+Q +KEL+ L + I YH++ YY P I D EYD L R AI +P+L N Sbjct: 9 SIQQVKKELTELRKTIRYHNNRYYNEDNPEISDYEYDQLMLRLKAIEAKYPELI---TKN 65 Query: 73 GPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P +GG+ + V H +P LSL+ +++ E++ F+ + + + F +E Sbjct: 66 SPTQVVGGQARRTAGVLVKHDVPMLSLQDVFSKEEIFAFVEELQQELEAP-----EFVVE 120 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHS-GEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 KIDG + +RYE G+ V A RGDG GEDV+ + I + + L +P E+RGE Sbjct: 121 EKIDGLSMALRYEDGELVRAITRGDGIVQGEDVTENAKVIHDVKKKLKDKLPY-FEIRGE 179 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249 VY+ K F A+N +G KP+ANPRN A+G LR+L+ R+L+ F+ L Sbjct: 180 VYMEKKAFDAVNARQELLGLKPFANPRNCAAGTLRQLDSRITKERHLSLFIFNLQTARGR 239 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E M+ G V +G + +T + + R LPYDIDG V K++ Sbjct: 240 TFTTHTEAYDFMKKQGIKVIHGYKVCHTADEVWQAITAIGENRGNLPYDIDGAVVKLNNL 299 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + +++LG A+ PRW I++K+ ++ T + I++ +GRTG +TP A +P+ + G + Sbjct: 300 ADREKLGATAKVPRWAIAYKYPPEEKETVIRKIELSVGRTGRITPTAVFDPIRLCGTTVE 359 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN+D+I L D+R+GD V V ++GE+IPKV +++ +R +PF Sbjct: 360 RATLHNQDFIDNL-----------DVRIGDTVRVYKSGEIIPKVKEVVKEKRPAGTEPFV 408 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 + CP+C + VR+ + K +C AQ + +FV R A +I+GLG+ Sbjct: 409 IGTTCPVCGAPAVREPDTSDIK-------CKNPSCPAQLESHILNFVGRSAMDIKGLGEA 461 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + + I AD++ L +++ K + + + +I + Sbjct: 462 AIHRLIED----GFIATIADLYRLGGKREELIEKGII---GKEKNTDKVLAAIEASKENE 514 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +R + LGI +G AR L ++ S A+ ++ V +G+I A Sbjct: 515 PQRLLTGLGIPGIGRTAARELMLHFGSIDALAKASE----------EEILEVRDMGEISA 564 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +AIV+++ +P + + A V + K V TGTL + R A Sbjct: 565 KAIVQYFNDPASQKILAAFRAAGVNFTLEDTGLVDEKFAGKTFVITGTLPSLSRKDAAAL 624 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G V+ +S+KTD ++ G+ GSKL+KA LG+ I++E LL+ Sbjct: 625 IESHGGRVAGSVSKKTDYLVAGEAAGSKLQKATDLGITILDEAGLQALLED 675 >gi|167770441|ref|ZP_02442494.1| hypothetical protein ANACOL_01786 [Anaerotruncus colihominis DSM 17241] gi|167667036|gb|EDS11166.1| hypothetical protein ANACOL_01786 [Anaerotruncus colihominis DSM 17241] Length = 664 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 207/708 (29%), Positives = 350/708 (49%), Gaps = 51/708 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +E A++ + L I H+ YY +P + D EYD L + AFP+LA + Sbjct: 6 DLESAKRRVQELRTVIEKHNHSYYVLDRPTVSDYEYDRLLHELIDLEEAFPELA---SDH 62 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GG + V H + SL+ +++ +L F R+ ++ + +EP Sbjct: 63 SPTRRVGGAALNTFAPVRHEVQMGSLQDVFDTAELEAFDARVREQIERPV-----YIVEP 117 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG + + Y+ G F + RGDG +GEDVS ++ + +IP L +P +IEVRGEVY Sbjct: 118 KIDGLSVALEYQDGVFFRGSTRGDGVTGEDVSENLKTVRSIPMTLPEALP-LIEVRGEVY 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + ++ F + + +P+ NPRNAA+G LR+ + R L+ FV + + Sbjct: 177 MPRSSFERVVARQLENEEEPFKNPRNAAAGSLRQKDSRVTAQRGLDIFVFNIQRIEGKTL 236 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 G E L M+ LGF V + + ++ + + R P+DIDG V KVD+F+ Sbjct: 237 SGHKESLDYMKSLGFKVIPSYKAFDNISDAIAEVERIGAQRYEFPFDIDGAVIKVDDFAQ 296 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 ++ LG ++ P+W ++ K+ ++ + L DI+I++GRTG LTP A EP+ + G ++ A Sbjct: 297 REALGATSKFPKWAVAFKYPPEEKQSVLRDIEIKVGRTGALTPTAVFEPITLAGTTVSRA 356 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 LHN+D+I + I +GD ++V++AG++IP+VV + ++ PDA + P Sbjct: 357 VLHNQDFI-----------NEKGIAIGDTIVVRKAGDIIPEVVSVARHQ--PDAPVYQIP 403 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C S R+ A RC AC AQ L HF SRDA +I+G+G + Sbjct: 404 AVCPSCGSTAEREEGE------AVLRCVNM-ACPAQVARNLTHFASRDAMDIDGMGPAIV 456 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 A ++ AD+++L + Q + + G+ S NL ++ + ++ L Sbjct: 457 HQLL----AAGLVKSAADLYSLTQAQLAA------LERMGERSAQNLIAALEQSKSRDLA 506 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R +++LGIR +G A+ LA+ + + + ++ G I+AQ Sbjct: 507 RLLYALGIRGIGQRSAQLLAQRFGTMDGVLAA----------SVEEIAQIDGFGGIMAQN 556 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 +F+ N ++ L + K V TGTL + R +A+ + Sbjct: 557 TADFFALEPNRALIDRLRAAGLNMACTSAPTAD-TLSGKIFVLTGTLPTLTRGEAKAMIE 615 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G VS +S+KTD ++ G+ GSKL KA +LGV +++E +L+ Sbjct: 616 AAGGKVSGSVSKKTDYVVAGEEAGSKLRKAGELGVAVLDEAALRAMLE 663 >gi|326559356|gb|EGE09783.1| NAD-dependent DNA ligase [Moraxella catarrhalis 7169] Length = 691 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 263/711 (36%), Positives = 389/711 (54%), Gaps = 45/711 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +Q ++ +L + + H+ YY P I D EYD L+R + P+L + P+ P Sbjct: 21 DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +N +GGE +V H +P LSL ++N +DL F+ R D + +E K+ Sbjct: 78 INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAID---EYEMELKL 134 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193 DG ++++Y+ G+F A RGDG GED++ +R I +P L+ + +E+RGEV + Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLM 194 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAK 252 K F LN E IA G K +ANPRNAA+G LR+LN FF + + Sbjct: 195 PKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGIT 254 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q +Q + LGF + + + A + I ++Y + RS LP++IDGLV KV++ +LQ Sbjct: 255 TQSGAMQWLGQLGFEIAS-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNLQ 313 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG +R PRW ++KF + TRL+D++ Q+GRTG LTPV RLEP+ +GG ++N T Sbjct: 314 ARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVT 373 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN I+ L + VGD V V RAG+VIPKV +I R DA+P P+ Sbjct: 374 LHNFGEIERL-----------GVMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLPT 422 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+CQS + A RCTGGL C+AQQ E L HFVSR A +I+GLG Q L Sbjct: 423 VCPVCQSPISLPEGE------ALARCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWLI 476 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 FF+ ++ ADI+ L + + + G GD SVT + +I K + +L R Sbjct: 477 KFFE----MGLVQTVADIYKLHK----QAEYLITLEGMGDKSVTKMLSAIEKSKQTTLPR 528 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LGIR VG A SLA+ + Q+ + D +L VP +G+I AQ+I Sbjct: 529 FIFALGIRGVGESTALSLAQQFGELQSIIEA----------DLQALQAVPDIGEITAQSI 578 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVT 671 +F++ NI V+AL++ + SS + + V TGTL + R +A++ + Sbjct: 579 YDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKLI 638 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA V+ +S KT ++ G+ GSKLEKAQ+LGV ++ E++FL L+ YN Sbjct: 639 ALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689 >gi|326569993|gb|EGE20040.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC1] Length = 691 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 263/711 (36%), Positives = 389/711 (54%), Gaps = 45/711 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +Q ++ +L + + H+ YY P I D EYD L+R + P+L + P+ P Sbjct: 21 DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +N +GGE +V H +P LSL ++N +DL F+ R D + +E K+ Sbjct: 78 INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAID---EYEMELKL 134 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193 DG ++++Y+ G+F A RGDG GED++ +R I +P L+ + +E+RGEV + Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLM 194 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAK 252 K F LN E IA G K +ANPRNAA+G LR+LN FF + + Sbjct: 195 PKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGIT 254 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q +Q + LGF + + + A + I ++Y + RS LP++IDGLV KV++ +LQ Sbjct: 255 TQSGAMQWLGQLGFEIAS-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNLQ 313 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG +R PRW ++KF + TRL+D++ Q+GRTG LTPV RLEP+ +GG ++N T Sbjct: 314 ARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVT 373 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN I+ L + VGD V V RAG+VIPKV +I R DA+P P+ Sbjct: 374 LHNFGEIERL-----------GVMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLPT 422 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+CQS + A RCTGGL C+AQQ E L HFVSR A +I+GLG Q L Sbjct: 423 VCPVCQSPISLPEGE------ALARCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWLI 476 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 FF+ ++ ADI+ L + + + G GD SVT + +I K + +L R Sbjct: 477 KFFE----MGLVQTVADIYKLHK----QAEYLITLEGMGDKSVTKMLSAIEKSKQTTLPR 528 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LGIR VG A SLA+ + Q+ + D +L VP +G+I AQ+I Sbjct: 529 FIFALGIRGVGESTALSLAQQFGELQSIIEA----------DLQALQAVPDIGEITAQSI 578 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVT 671 +F++ NI V+AL++ + SS + + V TGTL + R +A++ + Sbjct: 579 YDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKLI 638 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA V+ +S KT ++ G+ GSKLEKAQ+LGV ++ E++FL L+ YN Sbjct: 639 ALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689 >gi|326572929|gb|EGE22914.1| NAD-dependent DNA ligase [Moraxella catarrhalis CO72] Length = 691 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 264/711 (37%), Positives = 389/711 (54%), Gaps = 45/711 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +Q ++ +L + + H+ YY P I D EYD L+R + P+L + P+ P Sbjct: 21 DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +N +GGE +V H +P LSL ++N +DL F+ R D + +E K+ Sbjct: 78 INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAID---EYEMELKL 134 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193 DG ++++Y+ G+F A RGDG GED++ +R I +P L+ + +E+RGEV + Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLM 194 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAK 252 K F LN E IA G K +ANPRNAA+G LR+LN FF + + Sbjct: 195 PKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGIT 254 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q +Q + LGF + + + A + I ++Y + RS LP++IDGLV KV++ SLQ Sbjct: 255 TQSGAMQWLGQLGFEIAS-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLSLQ 313 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG +R PRW ++KF + TRL+D++ Q+GRTG LTPV RLEP+ +GG ++N T Sbjct: 314 ARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVT 373 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN I+ L + VGD V V RAG+VIPKV +I R DA+P P+ Sbjct: 374 LHNFGEIERL-----------GVMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLPT 422 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+CQS + A RCTGGL C+AQQ E L HFVSR A +I+GLG Q L Sbjct: 423 VCPVCQSPISLPEGE------ALARCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWLI 476 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 FF+ ++ ADI+ L + + + G GD SVT + +I K + +L R Sbjct: 477 KFFE----MGLVQTVADIYKLHK----QAEYLITLEGMGDKSVTKMLSAIEKSKQTTLPR 528 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LGIR VG A SLA+ + Q+ + D +L VP +G+I AQ+I Sbjct: 529 FIFALGIRGVGESTALSLAQQFGELQSIIEA----------DLQALQAVPDIGEITAQSI 578 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVT 671 +F++ NI V+AL++ + SS + + V TGTL + R +A++ + Sbjct: 579 YDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKLI 638 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA V+ +S KT ++ G+ GSKLEKAQ+LGV ++ E++FL L+ YN Sbjct: 639 ALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689 >gi|162148970|ref|YP_001603431.1| DNA ligase [Gluconacetobacter diazotrophicus PAl 5] gi|190359260|sp|A9H0L6|DNLJ_GLUDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|161787547|emb|CAP57143.1| putative DNA ligase [Gluconacetobacter diazotrophicus PAl 5] Length = 695 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 280/715 (39%), Positives = 409/715 (57%), Gaps = 34/715 (4%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 L+ QA EL L Q+I D YY+ P + D+EYDAL++R AI FPDL R Sbjct: 2 DPSELTEPQAMVELERLAQQIRALDRAYYEDDAPTVTDAEYDALRQRNLAIEARFPDLRR 61 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS-- 125 + + P + G + + + H +P LSL+ ++ ED F+TR RF DD + Sbjct: 62 A---DSPSLHVSGAPSAAFGRHRHLVPMLSLDNVFGREDFESFVTRAARFLGLNDDQARA 118 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + F EPKIDG I++ YE G+FV RGDG GEDV+A +R + +P L P +I Sbjct: 119 LRFVAEPKIDGLSISLTYEHGRFVRGTTRGDGTEGEDVTANLRTLRDVPLRLKGPAPALI 178 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 E+RGEV++SK FL++N G+KP+ANPRNAA+G LR+L+P R L+ F + G Sbjct: 179 EIRGEVFLSKPAFLSINAAQAEAGQKPFANPRNAAAGSLRQLDPNITARRPLSLFAYAQG 238 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 +S+ A ++ L+++R GF VN + ++ + + RS L YDIDG+VY Sbjct: 239 FSSDRVADTHWDYLERLRQWGFTVNPLSCVVESAEAAEAFMDRIARERSGLEYDIDGVVY 298 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD+ +LQ +LG R+PRW I+ KF +QA TRL IDIQ+GRTG LTPVA LEPVN+G Sbjct: 299 KVDDLALQDRLGFVGRAPRWAIAWKFPAEQAITRLTRIDIQVGRTGALTPVAILEPVNVG 358 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERH 422 G ++T ATLHNED I +D+RVGD V ++RAG+VIP+++ ++ + Sbjct: 359 GVIVTRATLHNEDEIAR-----------KDVRVGDLVQIQRAGDVIPQILGVVPPGADAP 407 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P + F FP CPIC +R R RCTGGL C AQ +ERL HFVSRDAF+ Sbjct: 408 PRGEAFIFPHTCPICGARAERPPGE------VVWRCTGGLTCPAQVVERLIHFVSRDAFD 461 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+GLG++ + F ++ PADIF L + I G+G VS NL S+ Sbjct: 462 IDGLGERTITEFHAD----GLLKTPADIFRLPDHEA----DIATREGWGTVSARNLTASV 513 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 R+ I L RFI++LGIR +G AR LA++Y SY ++ +++ +D+ L+L + Sbjct: 514 RARQTIPLARFIYALGIRRIGTSNARLLARHYGSYTHWREQMLRATTIGSDERLALGSIT 573 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +G IA + F+ N+ ++ L ++ + K +VFTGTL + Sbjct: 574 GIGGAIADELAAFFMEAHNLETLDDLTAMLTAIEDEDLPAQGH-LSGKTVVFTGTLTTMT 632 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 R +A+ +LGA V+ +S+KTD++++G + GSK KA +LG+ ++EE + L Sbjct: 633 RPEAKAIAERLGARVTDSVSKKTDLVVLGADAGSKARKAAELGIDTLDEEGWREL 687 >gi|326570074|gb|EGE20120.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC7] Length = 691 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 263/711 (36%), Positives = 388/711 (54%), Gaps = 45/711 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +Q ++ +L + + H+ YY P I D EYD L+R + P+L + P+ P Sbjct: 21 DQIIAQMRALIKLLKRHNHAYYVMDAPTISDGEYDGLRRTLMMLEQQHPNLIQ---PDSP 77 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +N +GGE +V H +P LSL ++N +DL F+ R D + +E K+ Sbjct: 78 INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAID---EYEMELKL 134 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193 DG ++++Y+ G+F A RGDG GED++ +R I +P L+ + +E+RGEV + Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLM 194 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAK 252 K F LN E IA G K +ANPRNAA+G LR+LN FF + + Sbjct: 195 PKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGIT 254 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q +Q + LGF + + A + I ++Y + RS LP++IDGLV KV++ +LQ Sbjct: 255 TQSGAMQWLGQLGFEIAP-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNLQ 313 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG +R PRW ++KF + TRL+D++ Q+GRTG LTPV RLEP+ +GG ++N T Sbjct: 314 ARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVT 373 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN I+ L + VGD V V RAG+VIPKV +I R DA+P P+ Sbjct: 374 LHNFGEIERL-----------GVMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLPT 422 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+CQS + A RCTGGL C+AQQ E L HFVSR A +I+GLG Q L Sbjct: 423 VCPVCQSPISLPEGE------ALARCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWLI 476 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 FF+ ++ ADI+ L + + + G GD SVT + +I K + +L R Sbjct: 477 KFFE----MGLVQTVADIYKLHK----QAEYLITLEGMGDKSVTKMLSAIEKSKQTTLPR 528 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LGIR VG A SLA+ + Q+ + D +L VP +G+I AQ+I Sbjct: 529 FIFALGIRGVGESTALSLAQQFGELQSIIEA----------DLQALQAVPDIGEITAQSI 578 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVT 671 +F++ NI V+AL++ + SS + + V TGTL + R +A++ + Sbjct: 579 YDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKLI 638 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA V+ +S KT ++ G+ GSKLEKAQ+LGV ++ E++FL L+ YN Sbjct: 639 ALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689 >gi|326573825|gb|EGE23778.1| NAD-dependent DNA ligase [Moraxella catarrhalis O35E] Length = 691 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 263/711 (36%), Positives = 388/711 (54%), Gaps = 45/711 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +Q ++ +L + + H+ YY P I D EYD L+R + P+L + P+ P Sbjct: 21 DQIIAQMRALIKLLKRHNHAYYVMDAPTISDGEYDGLRRTLMMLEQQHPNLIQ---PDSP 77 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +N +GGE +V H +P LSL ++N +DL F+ R D + +E K+ Sbjct: 78 INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAID---EYEMELKL 134 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193 DG ++++Y+ G+F A RGDG GED++ +R I +P L+ + +E+RGEV + Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLM 194 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAK 252 K F LN E IA G K +ANPRNAA+G LR+LN FF + + Sbjct: 195 PKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGIT 254 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q +Q + LGF + + A + I ++Y + RS LP++IDGLV KV++ +LQ Sbjct: 255 TQSGAMQWLGQLGFEIAP-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNLQ 313 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG +R PRW ++KF + TRL+D++ Q+GRTG LTPV RLEP+ +GG ++N T Sbjct: 314 ARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVT 373 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN I+ L + VGD V V RAG+VIPKV +I R DA+P P+ Sbjct: 374 LHNFGEIERL-----------GVMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLPT 422 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+CQS + A RCTGGL C+AQQ E L HFVSR A +I+GLG Q L Sbjct: 423 VCPVCQSPISLPEGE------ALARCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWLI 476 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 FF+ ++ ADI+ L + + + G GD SVT + +I K + +L R Sbjct: 477 KFFE----MGLVQTVADIYKLHK----QAEYLITLEGMGDKSVTKMLSAIEKSKQTTLPR 528 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LGIR VG A SLA+ + Q+ + D +L VP +G+I AQ+I Sbjct: 529 FIFALGIRGVGESTALSLAQQFGELQSIIEA----------DLQALQAVPDIGEITAQSI 578 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVT 671 +F++ NI V+AL++ + SS + + V TGTL + R +A++ + Sbjct: 579 YDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKLI 638 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA V+ +S KT ++ G+ GSKLEKAQ+LGV ++ E++FL L+ YN Sbjct: 639 ALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689 >gi|213964541|ref|ZP_03392741.1| DNA ligase, NAD-dependent [Corynebacterium amycolatum SK46] gi|213952734|gb|EEB64116.1| DNA ligase, NAD-dependent [Corynebacterium amycolatum SK46] Length = 703 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 208/720 (28%), Positives = 350/720 (48%), Gaps = 51/720 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P + R++ L I + YY ++P+I D+EYD + R+ + +PDL Sbjct: 23 PASEPAPADVREKWQELATRIRDNAALYYT-AQPVISDAEYDEMFRQLQQLEEQWPDLVV 81 Query: 68 SEDPNGPLNKIGGEMN-----LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P+ P ++G ++ V H SL+ +++ ++LR ++ R Sbjct: 82 ---PDSPTQQVGAQVEAPADGEVFEPVEHLERLYSLDNVFDEQELRGWLART-------- 130 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI- 181 + + E KIDG I + YEKG+ V AA RGDG GE+V+A R I IP +S Sbjct: 131 -PASTYLTELKIDGLSIDLVYEKGRLVRAATRGDGRVGENVTANARTIEDIPHEISGENV 189 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFV 240 P+++EVRGEV+IS +F +N + + G+KP+ANPRNAA+G LR+ + + R L+ Sbjct: 190 PDVLEVRGEVFISLEEFERINSDRVDAGQKPFANPRNAAAGSLRQKDVAEVAKRRLSMIC 249 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 HG+G + Q+E + + GF V+ Q ++ +V R +++D Sbjct: 250 HGIGHIEGWRPQSQHEAYRALGEWGFHVSPYTNQVHSADDVVKQMQYWGEHRHDAIHEMD 309 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 GLV KVD S Q+ LG +R+PRW I++K+ ++ +T LLDI + IGRTG TP A ++P Sbjct: 310 GLVVKVDSLSEQRALGATSRAPRWAIAYKYPPEEVTTDLLDIRVSIGRTGRATPYAVMKP 369 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V + G+ + ATLHN + + + +GDRV +++AG+VIP+V+ + + Sbjct: 370 VFVAGSTVEMATLHNPSEVHR-----------KGVLIGDRVTIRKAGDVIPEVLGPVADL 418 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R + + +P+ CP C +R+ A RC C Q R++ SR Sbjct: 419 RDGSERKYIYPTLCPECGTRLA-----PAKDSDADWRCPNTRYCPGQLRRRIEFLASRSG 473 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG-DVSVTNLY 539 F+IE LG++ + + +F L T + + L Sbjct: 474 FDIENLGERGAADLIHR----GVLDDESRLFDLTEEDLLGTEVYTTASRKSLNANGKKLL 529 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I+ ++ L R + SL IRHVG +AR+LA+ + S + + Sbjct: 530 ANIDAAKDKELWRVLVSLSIRHVGPTVARTLAQKFGSMEALRAA----------SREEIS 579 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 + +G+II ++ ++++ + VE +E +V TG+L+ Sbjct: 580 AIDGIGEIIGDSVADWFEVDWHREVVERWEAAGVRMADEVTDRPDQVLEGLTVVVTGSLE 639 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R A+E + G + +S+KTD ++VG+N GSK KA++LG+ I++E+ F LL+ Sbjct: 640 DFTRDSAKEAIISRGGKAAGSVSKKTDYVVVGENAGSKATKAEELGLPILDEDGFKRLLE 699 >gi|325962711|ref|YP_004240617.1| DNA ligase, NAD-dependent [Arthrobacter phenanthrenivorans Sphe3] gi|323468798|gb|ADX72483.1| DNA ligase, NAD-dependent [Arthrobacter phenanthrenivorans Sphe3] Length = 767 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 216/751 (28%), Positives = 359/751 (47%), Gaps = 63/751 (8%) Query: 3 KRQLIPIEALSI--EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 R P+E S+ E R+E +L + + YYQ P++ D+E+D L RR + I Sbjct: 13 TRTTEPVEPESVPSESVREEYENLVDLVRKYRFAYYQEDAPLVSDAEFDELFRRLEEIEA 72 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 P+L + P ++GGE++ + V H SLE ++++E+L ++T+ K Sbjct: 73 LHPELV---SNDSPTQEVGGEVSAAFAAVEHLQRMYSLEDVFSLEELEAWLTKASASIGK 129 Query: 121 KDDNSIF--FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 + + + E KIDG + + Y GK V AA RGDG +GED++ + I IPR L Sbjct: 130 LGNGTPAAAWLTELKIDGLAVNLLYRDGKLVRAATRGDGTTGEDITHNVLTIQEIPRELR 189 Query: 179 LN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYL 236 P +EVRGEV+I +F N+ +I G+ P ANPRNAA+G LR+ +P + R L Sbjct: 190 GEGFPAEMEVRGEVFIPSKEFAEFNEALIEAGKAPLANPRNAAAGSLRQKDPAETAKRPL 249 Query: 237 NFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296 FVHG+G + A Q E ++ G PV+ + ++ + R L Sbjct: 250 KMFVHGIGARDGLPAGSQSESYALLKQWGLPVSPYSEVLGSLDEVLEFIKRYGDKRHKLL 309 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 ++IDG+V KVD+F+ Q+ LG R PRW +++K+ ++ T+LLDI + +GRTG +TP Sbjct: 310 HEIDGIVIKVDDFATQRALGYTTRVPRWAVAYKYPPEEVHTKLLDIQVNVGRTGRVTPFG 369 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 +EPV + G+ + ATLHN+D +K + +++GD V++++AG+VIP++V Sbjct: 370 LMEPVKVAGSTVEMATLHNQDVVK-----------AKGVKIGDIVILRKAGDVIPEIVGP 418 Query: 417 IVNERH---PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473 ++ R P + F P+ CP C + + + RC +C +Q ER+ Sbjct: 419 VLALRDQQDPPVRDFVMPTECPSCGTPLA-----PAKEGDVDIRCPNAKSCPSQLRERVF 473 Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPA-FSIRIPADIFTLQRRQQTSTTKIENI----- 527 H R AF+IE LG + + +P + A +F L Sbjct: 474 HLAGRGAFDIEALGWEAAIALTQPAEPEVPPLTSEAALFDLTPEDLAGVRIRREKRSKGV 533 Query: 528 -------------------LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 + L+ ++K + L R + +L IRHVG +R Sbjct: 534 PTGEYELVPYFYSKGTAKSPSRPTATTEKLFKELDKAKTQPLWRVLVALSIRHVGPRASR 593 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 +LA + S Q L V VG IA A+ E++ + V+ Sbjct: 594 ALATAFGSMDAIRQASE----------EELAHVDGVGPTIAAALKEWFAEDWHREIVDRW 643 Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 ++++ +E +V TG+L R +A+E + G + +S+ T + Sbjct: 644 AAAGVRMKDERDESMPRTLEGLTVVVTGSLPNFSRDEAKEAILVRGGKAAGSVSKNTSYL 703 Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + G++ G+KL+KA+QLG+ +++E+ F LL Sbjct: 704 VAGESAGTKLDKAEQLGIPVLDEDGFRQLLA 734 >gi|209545276|ref|YP_002277505.1| NAD-dependent DNA ligase [Gluconacetobacter diazotrophicus PAl 5] gi|209532953|gb|ACI52890.1| DNA ligase, NAD-dependent [Gluconacetobacter diazotrophicus PAl 5] Length = 708 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 279/716 (38%), Positives = 410/716 (57%), Gaps = 34/716 (4%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + L+ QA EL L Q+I D YY+ P + D+EYDAL++R AI FPDL Sbjct: 14 LDPSELTEPQAMVELERLAQQIRALDRAYYEDDAPTVTDAEYDALRQRNLAIEARFPDLR 73 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS- 125 R+ + P + G + + + H +P LSL+ ++ ED F+TR RF DD + Sbjct: 74 RA---DSPSLHVSGAPSAAFGRHRHLVPMLSLDNVFGREDFESFVTRAARFLGLNDDQAR 130 Query: 126 -IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 + F EPKIDG I++ YE G+FV RGDG GEDV+A +R + +P L P + Sbjct: 131 ALRFVAEPKIDGLSISLTYEHGRFVRGTTRGDGTEGEDVTANLRTLRDVPLRLKGPAPAL 190 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 IE+RGEV++SK FL++N G+KP+ANPRNAA+G LR+L+P R L+ F + Sbjct: 191 IEIRGEVFLSKPAFLSINAAQAEAGQKPFANPRNAAAGSLRQLDPNITARRPLSLFAYAQ 250 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G +S+ A ++ L+++R GF VN + ++ + + RS L YDIDG+V Sbjct: 251 GFSSDRVADTHWDYLERLRQWGFTVNPLSCVVESAEAAEAFMDRIARERSGLEYDIDGVV 310 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YKVD+ +LQ +LG R+PRW I+ KF +QA TRL I+IQ+GRTG LTPVA LEPVN+ Sbjct: 311 YKVDDLALQDRLGFVGRAPRWAIAWKFPAEQAITRLTRINIQVGRTGALTPVAILEPVNV 370 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ER 421 GG ++T ATLHNED I +D+RVGD V ++RAG+VIP+++ ++ + Sbjct: 371 GGVIVTRATLHNEDEIAR-----------KDVRVGDLVQIQRAGDVIPQILGVVPPGADA 419 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 P + F FP CPIC +R R RCTGGL C AQ +ERL HFVSRDAF Sbjct: 420 PPRGEAFIFPHTCPICGARAERPPGE------VVWRCTGGLTCPAQVVERLIHFVSRDAF 473 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +I+GLG++ + F ++ PADIF L + I G+G VS NL S Sbjct: 474 DIDGLGERTITEFHAD----GLLKTPADIFRLPDHEA----DIATREGWGTVSARNLTAS 525 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 + R+ I L RFI++LGIR +G AR LA++Y SY ++ +++ +D+ L+L + Sbjct: 526 VRARQTIPLARFIYALGIRRIGTSNARLLARHYGSYTHWREQMLRATTIGSDERLALGSI 585 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G IA + F+ N+ ++ L ++ + K +VFTGTL + Sbjct: 586 TGIGGAIADELAAFFMEAHNLETLDDLTAMLTAIEDEDLPAQGH-LSGKTVVFTGTLTTM 644 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 R +A+ +LGA V+ +S+KTD++++G + GSK KA +LG+ ++EE + L Sbjct: 645 TRPEAKAIAERLGARVTDSVSKKTDLVVLGADAGSKARKAAELGIDTLDEEGWREL 700 >gi|318040766|ref|ZP_07972722.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CB0101] Length = 690 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 216/722 (29%), Positives = 343/722 (47%), Gaps = 49/722 (6%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P S+ + L Q ++ YY P + D YD L R + A P+L Sbjct: 4 PAPDESLAAPHARAAELRQLLNRAAHAYYVLDAPEMEDPVYDRLYRELLDLETAHPELIA 63 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++GG V H I LSL+ +N +L + R+ + ++ ++ Sbjct: 64 ---PDSPTQRVGGAPAEGFQSVQHRIGLLSLDNAFNTGELEAWYARLLKVLDREPAAALP 120 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIE 186 E KIDG + + YE G V AA RGDG GE+++A +R I ++P L + PE +E Sbjct: 121 MVGELKIDGNALALSYEHGVLVRAATRGDGEQGEEITANVRTIGSVPLRLQLEHPPEWLE 180 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245 VRGE +I F A+N E + G +ANPRNA +G LR+L+P R L+FF + L Sbjct: 181 VRGEAFIPDGTFTAINAERESRGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHL 240 Query: 246 TSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 Q+E LQ ++ GF VN + +++ + R L Y DG+V Sbjct: 241 PPGTQGPASQWESLQWLKAAGFKVNPNAELLPDLAAVEAFFERWDTGRRQLDYATDGVVV 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 K+++ +LQ G ++PRW I+ K+ ++A ++LL + Q+GRTG++TPVA EPV + Sbjct: 301 KLNDLALQDAAGFTQKAPRWAIALKYPAEEAPSKLLRLACQVGRTGVVTPVAEFEPVPLA 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ ATLHN D + L D+ GD ++V++AGE+IP+VV ++ R Sbjct: 361 GTSVSRATLHNADRLVEL-----------DLHAGDTIVVRKAGEIIPEVVRVLAELRPAG 409 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 AQ P CP C S +VR+ AA RC +C A L+H+VS+ A +++ Sbjct: 410 AQRLELPHTCPECGSELVREEGE------AATRCVNS-SCPAILRGALRHWVSKGALDVD 462 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG + ++ + AD++ L S + G S NL ++ Sbjct: 463 GLGSKLIEQLVDR----GLVGSIADLYRLDGALLAS------LERMGSKSADNLVAALAA 512 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + R ++ LGI HVG A++LA + S A D + V + Sbjct: 513 SKAQPWNRQLYGLGIHHVGEVNAKTLASAFPSAAELATA-------ATDTPELITAVYGI 565 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEV--------SPSIGRHEKNVSSEIENKKLVFTG 656 G IAQ++ +++ N + L + + S+++ + V TG Sbjct: 566 GGEIAQSLQQWFATAANQELLSQLERLGFSLATSDEELAAAAERSAASAQLNGQTFVLTG 625 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL + R +A+ + G VS +S+KT ++ GD GSKL KA+ LGV +++E Sbjct: 626 TLPSMSRSEAKALIEAAGGKVSGSVSKKTSYVVAGDEAGSKLSKAESLGVAVLDEAGLQA 685 Query: 717 LL 718 LL Sbjct: 686 LL 687 >gi|81749525|sp|Q8FPZ7|DNLJ_COREF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|23493177|dbj|BAC18148.1| putative DNA ligase [Corynebacterium efficiens YS-314] Length = 938 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 224/714 (31%), Positives = 349/714 (48%), Gaps = 50/714 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 Q R+ + L +++ YH D YY +P I D+++DAL R+ + P+LA P+ Sbjct: 264 DNAQLRRTWNELAEKVRYHRDLYYNQ-QPEIPDADFDALFRQLQDLEEQHPELAV---PD 319 Query: 73 GPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++G + S V H LSL+ +++ E+LR ++ R + + Sbjct: 320 SPTKEVGAPVTEQSSFDNVEHLERMLSLDNVFDEEELRDWLART---------PAKRYLT 370 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR----VLSLNIPEIIE 186 E KIDG I + Y G AA RGDG GED++A R I IP IP ++E Sbjct: 371 ELKIDGLSIDLVYRNGMLERAATRGDGRVGEDITANARVIGDIPHELTATEEYPIPAVLE 430 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245 VRGEV+I DF +N + I G KP+ANPRNAA+G LR+ NP D R L HG+G Sbjct: 431 VRGEVFIPIEDFADVNAQRIEDGGKPFANPRNAAAGSLRQKNPEDVKKRRLRMITHGIGY 490 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + Q++ + G P ++ T +V R +++DGLV K Sbjct: 491 SEGFQPASQHDAYLALAAWGLPTSSYTEAVETADAVVDKVLYWADHRHDALHEMDGLVIK 550 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ + Q+ LG +R+PRW I++K+ ++ +T+L+DI + +GRTG +TP A +EPV + G Sbjct: 551 VDDIASQRALGSTSRAPRWAIAYKYPPEEVTTKLIDIKVSVGRTGRVTPFAMMEPVFVAG 610 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + ++ ATLHN+ +K + + +GD V+V++AGEVIP+V+ +V R Sbjct: 611 STVSMATLHNQSEVKR-----------KGVLIGDTVVVRKAGEVIPEVLGPVVELRDGTE 659 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + F FP CP C S + A RC +C Q +RL + R AF+IE Sbjct: 660 REFVFPEHCPECGSTLAPTRAE-----DADWRCPNTRSCPGQLSQRLTYIAGRGAFDIEA 714 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG++ ++ + A +F L + G + S L ++ +R Sbjct: 715 LGEKGAQDLIRN----GILVDEAGLFDLTEEDLLESDVYTTKAGAVNASGRKLLANLEQR 770 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 +N L R + +L IRHVG AR+LA Y S Q L VG Sbjct: 771 KNTDLWRVLVALSIRHVGPTAARALAGRYRSMQKLVDAP----------VDELAETDGVG 820 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 IIAQ+ ++++ + V+ + + +E +V TG L+ R Sbjct: 821 MIIAQSFKDWFEVDWHRAIVDTWAAAGVTMEDAETEQLEQTLEGLTIVVTGGLEGFTRDS 880 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + G S +S+KTD ++VG+N GSK KA++LG+ I++EE F+ LL Sbjct: 881 VKEAIISRGGKASGSVSKKTDYVVVGENAGSKATKAEELGLTILDEEAFVRLLD 934 >gi|120434999|ref|YP_860685.1| DNA ligase [Gramella forsetii KT0803] gi|166215777|sp|A0LZ23|DNLJ_GRAFK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|117577149|emb|CAL65618.1| DNA ligase [Gramella forsetii KT0803] Length = 664 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 222/707 (31%), Positives = 358/707 (50%), Gaps = 47/707 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + K++ L +E+ H+ YY KP I D E+D + + +P+ ED N P Sbjct: 2 EVEKKIRGLREELQQHNYNYYVLDKPQISDYEFDIKLKELQELEEKYPEF---EDDNSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + + V H SL ++ E+L ++ R+ + + I + E K D Sbjct: 59 RRVGGAVTKNFETVVHENRMYSLSNSYSKEELEEWEARLKKIVE----GKIQYVCELKYD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I++ YE G A RGDG G+DV+ I+ I ++P L P ++RGE+ + Sbjct: 115 GASISLTYENGILKRAVTRGDGFQGDDVTNNIKTIRSVPLKLKDEFPHKFDIRGEIVLPY 174 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 F +N E + +G +PYANPRN ASG L+ + ++ R + Q+ Sbjct: 175 EGFAKMNAERVEMGEEPYANPRNTASGSLKLQDSAEVARRPLECLLYSITGENTGVASQF 234 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L+K R GF V ++ ++ Y N R LPY+ DG+V KV+ F Q++L Sbjct: 235 EGLEKARKWGFKVPAESELKDSIEEVLHYINYWDEHRHDLPYETDGVVVKVNNFHQQEEL 294 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF +Q ST+L I Q+GRTG +TPVA L+ V + G ++ A+LHN Sbjct: 295 GHTAKSPRWAIAYKFKAEQESTKLNKITYQVGRTGAITPVANLDAVQLAGTVVRRASLHN 354 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+ L D+R GD V V++ GE+IPK+V + +R PD+ P + + CP Sbjct: 355 ADQIEKL-----------DVREGDTVFVEKGGEIIPKIVGVDFTKRDPDSNPTQYATNCP 403 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S ++R A H C C Q + R++H++SR A +IEGLG + + Sbjct: 404 ECDSELIRKDGE------AQHYCPNVNGCPPQIIGRIQHYISRKAMDIEGLGGETVALLV 457 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 A I AD++ LQ+ ++ + + S NL + I + + I ER +F Sbjct: 458 N----ADLIESYADLYKLQKE------EVLPLERMAEKSAENLINGIERSKEIPFERVLF 507 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR+VG +A+ LAK++ S + L+ + +G+ IA ++VEF Sbjct: 508 ALGIRYVGETVAKKLAKHFKSIEALMAASE----------EELVNIDEIGERIAWSVVEF 557 Query: 616 YQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + N VE L + N ++ +E V +G +K+ R+ ++ + Sbjct: 558 FNIEANRENVERLKEYGIQLEISAEKLANQTNILEGNTFVISGVFEKVSRNDLKKMIEDN 617 Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 G +S+ +S KT+ ++ GDN G SKL KA++LG I++EE FL +L+ Sbjct: 618 GGKLSSSISSKTNYLVAGDNMGPSKLAKAEKLGTSIISEEDFLKMLE 664 >gi|226305867|ref|YP_002765827.1| NAD(+)-dependent DNA ligase [Rhodococcus erythropolis PR4] gi|254781402|sp|C0ZXK3|DNLJ_RHOE4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|226184984|dbj|BAH33088.1| NAD(+)-dependent DNA ligase [Rhodococcus erythropolis PR4] Length = 700 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 219/723 (30%), Positives = 355/723 (49%), Gaps = 42/723 (5%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +AR++ + L +E+ H YY P+I D +D L + +A+ +PDL P+ Sbjct: 12 PNEAREQWTELAEEVRQHQFRYYVRDAPVISDGAFDTLLGQLNALEEQYPDL---RTPDS 68 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +GG V H LSL+ +++ +LR +I ++ ++ + + E K Sbjct: 69 PTQLVGGGFATDFTSVDHLERMLSLDNVFDESELRGWIAKVE----QETGPELHYLCEVK 124 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRG 189 IDG + + YE GK V AA RGDG +GE V+ I IP L+ IP ++EVRG Sbjct: 125 IDGVALNLVYENGKLVRAATRGDGRTGELVTLNALTINDIPERLTATDEFPIPTLLEVRG 184 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EV+ DF ALN ++ G+ P+ANPRN+A+G LR+ NP R L HG G+ Sbjct: 185 EVFFRLEDFAALNASLVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGFGRMEG 244 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 QY+ + G PV+ + +V R + ++IDGLV KVDE Sbjct: 245 FEPASQYDAYVALAAWGLPVSTHTSRVVGADAVVEKMKYWGEHRHDVEHEIDGLVVKVDE 304 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 SL ++LG +R+PRW I++K+ ++ +T+LLDI + +GRTG +TP A +EPV + G+ + Sbjct: 305 MSLHRRLGTTSRAPRWAIAYKYPPEEVTTKLLDIRVSVGRTGRVTPFAYMEPVTVAGSTV 364 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHN +K + + +GD V++++AG+VIP+V+ + + R + F Sbjct: 365 SLATLHNGSEVKR-----------KGVLIGDTVVLRKAGDVIPEVLGPVADVRDGTEREF 413 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C + + + RC C AQ ER+ H R AF+IE LG Sbjct: 414 VMPTHCPECGTLLA-----PAKEGDVDVRCPNQQHCPAQLRERVFHVSGRGAFDIEVLGY 468 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + +++ I D+F+L + G + L +++ ++ Sbjct: 469 EAATGLLEAK----VIGDEGDLFSLDAEKLIEVPIFRTNAGALSANGKRLLANLDSAKDK 524 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L R + +L IRHVG AR+LA + S Q + L V VG I Sbjct: 525 PLWRVLVALSIRHVGPTAARALAGEFGSLQRIREA----------SVDELAAVDGVGSTI 574 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A A+VE++ + V+ + ++ +E +V TG+L+ R +A+E Sbjct: 575 AAAVVEWFSVDWHQQIVDKWASAGVRMEDERDDSIPRNLEGLSIVVTGSLETYSRDQAKE 634 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIH 728 + G + +S+KT ++VG+ PGSK +KA +LGV +++E+ F LL+ + Sbjct: 635 AILVRGGKAAGSVSKKTAFVVVGEAPGSKHDKAVELGVPVLDEDGFRRLLEDGPDAVAPT 694 Query: 729 DDD 731 D D Sbjct: 695 DLD 697 >gi|329912476|ref|ZP_08275756.1| DNA ligase [Oxalobacteraceae bacterium IMCC9480] gi|327545605|gb|EGF30768.1| DNA ligase [Oxalobacteraceae bacterium IMCC9480] Length = 679 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 262/696 (37%), Positives = 380/696 (54%), Gaps = 47/696 (6%) Query: 29 SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88 H YY P+I D++YD L R +A+ + P+L + + P ++G + Sbjct: 21 DRHAHAYYVLDNPVIPDADYDLLFRELEALEASHPELVTA---DSPTRRVGAPPLPEFVQ 77 Query: 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148 V HS+P LSL + ED+ F R+ Q + + E K DG I +RYE G Sbjct: 78 VRHSVPMLSLSNGFADEDVIGFDRRVRDGLQIA--GEVAYATELKYDGLAINLRYENGVL 135 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG +GE+V+ IR I IP + P II+VRGEV + K DF +LN A Sbjct: 136 VEAATRGDGSTGENVTVNIRTIRGIPLRLHTDTPPAIIDVRGEVLLYKADFASLNARQRA 195 Query: 208 VGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK-TSEIFAKGQYEMLQKMRCLG 265 G K +ANPRNAA+G LR+L+ R L FF +G+G +L R LG Sbjct: 196 AGLKEFANPRNAAAGSLRQLDSRITAQRALRFFAYGIGTLEGVAMPDSHSGLLDWYRALG 255 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 PV + + + G++ +Y E+ + R++LPY+IDG+VYKVD+ Q+QLG AR+PR+ Sbjct: 256 IPVCDERKVVHGAAGLLDFYREIGAKRASLPYEIDGVVYKVDDAVQQQQLGFVARAPRYA 315 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++HKF ++AST + ID+Q+GRTG +TPVARL PV +GG ++TNATLHNED ++ Sbjct: 316 LAHKFPAEEASTVVQGIDVQVGRTGAITPVARLAPVAVGGVIVTNATLHNEDEVRR---- 371 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 +DIR+GD V+V+RAG+VIP+VV I + R PD Q F PS CP+C S +VR Sbjct: 372 -------KDIRIGDTVIVRRAGDVIPEVVAFIADLRGPDVQEFVMPSACPVCGSAIVRLE 424 Query: 446 NPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504 + A RC+G + C+AQ+ L HFVSR A +IEGLG+Q + E I Sbjct: 425 DE------AIARCSGGWIKCAAQRKGGLLHFVSRRAMDIEGLGEQLVVQLVDRE----VI 474 Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564 R PAD++ L + + D S N+ ++ K ++ +L RFI++LGIRHVG Sbjct: 475 RTPADLYKL------GLVGLSELARMADKSARNVLAALEKSKSTTLARFIYALGIRHVGE 528 Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 A+ LA ++ L+ V VG ++A +I+EF+ +P N+ Sbjct: 529 ATAKELAAHFGQLDIVLAATE----------EQLLEVADVGPVVACSILEFFADPLNVEL 578 Query: 625 VEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 VE L + + VS K V TGTL + R +A + G V+ +S+ Sbjct: 579 VEQLRAAGVHWTEHAGRQVVSLPQSGKTFVLTGTLPTLGRDEAAALIEAAGGKVAGSVSK 638 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 KT ++ G + GSKL KAQ+LG+ I++E L LL+ Sbjct: 639 KTSYVVAGSDAGSKLAKAQELGLAILDEAGLLQLLK 674 >gi|255281707|ref|ZP_05346262.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469] gi|255267774|gb|EET60979.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469] Length = 674 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 211/708 (29%), Positives = 348/708 (49%), Gaps = 48/708 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 ++E ++++ L + + YH D YY P I D EYD + ++ P+L P Sbjct: 4 TVETIQQKIEELRKTLEYHSDRYYNQDNPEISDYEYDQMMLELKSLEKEHPELI---TPE 60 Query: 73 GPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P +GG + V H +P LSL +++ E++ F+ + + F +E Sbjct: 61 SPTQHVGGTAKREAGVLVKHRVPMLSLADVFSREEVDAFVQDMQ-----AQFGNPEFVVE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHS-GEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 KIDG + +RY G A RGDG GEDV+ R I + L IP + E+RGE Sbjct: 116 TKIDGLSMALRYTDGVLTTAITRGDGIIQGEDVTENARVIKDVKTRLKHPIPYL-EIRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249 VY++ F +N++ +G+K +ANPRN A+G LR+L+ R L+ FV + +T Sbjct: 175 VYMTDAAFEKVNEKQELLGKKLFANPRNCAAGTLRQLDSRITKERELSLFVFNIQETQGR 234 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E + ++ G V + + T + + E+ S+R L YDIDG V K++ Sbjct: 235 EFTTHTEGYEYLKSNGIRVIDHYKVCRTADEVWNAIEEIGSMRGELGYDIDGAVVKLNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + + +G ++ PRW +++K+ ++ + LLDI++ +GRTG +TP A EPV + G ++ Sbjct: 295 AQRAIVGATSKVPRWAVAYKYPPEEKESVLLDIELSVGRTGRITPTAVFEPVRLCGTSVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN+D+I L DI +GD ++V ++GE+IPK+ + +R A+ F Sbjct: 355 RATLHNQDFIDDL-----------DICIGDTIVVYKSGEIIPKIRAVKKEKRPQGAKRFR 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP+C + VR+ + A RCTG C AQ + +FV RDA +I+G G Sbjct: 404 IPDVCPVCGAPAVREKD------TADIRCTGS-NCPAQLERHIINFVGRDAMDIKGFGAN 456 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + + ++ ADIF+L+ ++ + + + L +I + Sbjct: 457 YIIELVR----LGYLKNVADIFSLKEHREELIEQGII---GKEKNTDKLLKAIEDAKANQ 509 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +R + LGI+ VG ARSL ++ + + A L V +G I A Sbjct: 510 PDRLLTGLGIQGVGKATARSLMSHFGTIEKLAGASQ----------EELESVSDIGSISA 559 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +AI ++ P N +E L E+ + K V TGTL + R +A Sbjct: 560 EAIRSYFAEPDNRRLLEKLRDAGVNMEAEQEE-AGTVFAGKTFVVTGTLPTMGRSEAVSL 618 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +LG + +S+KT ++ G+N GSKL KAQQLG+ +++E +FL + Sbjct: 619 IQKLGGKAAGSVSKKTSYVLAGENAGSKLTKAQQLGIPVIDEAEFLEM 666 >gi|160902460|ref|YP_001568041.1| DNA ligase, NAD-dependent [Petrotoga mobilis SJ95] gi|190359269|sp|A9BJX5|DNLJ_PETMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|160360104|gb|ABX31718.1| DNA ligase, NAD-dependent [Petrotoga mobilis SJ95] Length = 668 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 233/708 (32%), Positives = 374/708 (52%), Gaps = 45/708 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++ L+ EI H+ YY + PII D EYD L + + +P+L P+ Sbjct: 4 PKNIKERYEKLKAEIEEHNYRYYVLADPIISDQEYDKLFKELVELEKKYPELK---TPDS 60 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +IGG + KV H IP LSL+ +N E++ F R+ + N + + E K Sbjct: 61 PTQRIGGIVVEGFNKVNHLIPMLSLDNTYNEEEILDFHKRVLKNLSL---NHVEYFCELK 117 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG + +RY G A RGDG +GED++ ++ IP+IP L N+ IEVRGE+Y+ Sbjct: 118 IDGVSVALRYTDGVLTQAITRGDGTTGEDITQNVKTIPSIPLRLRENL--TIEVRGEIYM 175 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAK 252 K +F+ +N E G +ANPRNA +G L+ L+ T+ R L+ F++ + + Sbjct: 176 PKKEFVRINSEREEKGLPVFANPRNATAGTLKLLDSTEVAKRKLSSFMYYVIFPQNYNLE 235 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E + ++ +GF +N + A ++ ++ E R L Y++DG+V KV+ F LQ Sbjct: 236 TQEEAINFLKEVGFRINPNYKNAQDIGQVIEFWKEWNRRRKELEYEVDGIVVKVNSFELQ 295 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LGE ARSPRW I+ KF +Q T+L I +Q+G TGI+TPVA +P+ + G ++ A+ Sbjct: 296 RLLGETARSPRWAIAFKFEAEQKETKLKAIKLQVGSTGIITPVAEFDPIQLEGTIVKRAS 355 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN DY+K RDIR GD VL+++AG +IP+V+ + +R + + P Sbjct: 356 LHNFDYLK-----------ERDIREGDYVLIEKAGGIIPQVIGPVKEKRTGEEKIIRPPE 404 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C +V K A RC +C + L L++FVSR+A NI+GLG + L Sbjct: 405 KCPVCGGKVG-----KIKSSEVAIRCLNP-SCPEKLLRTLENFVSRNAMNIQGLGPKILK 458 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 A ++ AD++ L ++ S G GD +V N+ I + +N L+R Sbjct: 459 RMVD----AGLLKDIADLYYLNEQKIRSLG-----EGIGDKTVENILTQIEQSKNRELDR 509 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 I +LGI +VG++ A+ LA ++ + + + L+ + +G+ IA AI Sbjct: 510 LINALGIPNVGSKTAKDLANHFKNLDSLIDA----------KFDELVEIEGIGEDIANAI 559 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 ++F+ V+ L + E+ + ++ + TG L K+ R + EYV Sbjct: 560 IKFFSQEEVKKIVKKLKDAGVNMGKKEEEKLEGPLKGLVICQTGALSKMTRQEFAEYVES 619 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G S +++KT+I++VG+NPGSKL+KAQ G+ IM+EE+F + Sbjct: 620 KGGTFSENVTKKTNILVVGENPGSKLDKAQSYGITIMSEEEFFDKYGE 667 >gi|296270799|ref|YP_003653431.1| NAD-dependent DNA ligase [Thermobispora bispora DSM 43833] gi|296093586|gb|ADG89538.1| DNA ligase, NAD-dependent [Thermobispora bispora DSM 43833] Length = 732 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 228/739 (30%), Positives = 360/739 (48%), Gaps = 62/739 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R + L + I + YY P + D+EYDA R + +PDL P+ P K Sbjct: 18 RDRHAELAELIEEANWRYYVLDSPTVSDAEYDAWMREIRELEERYPDL---RTPDSPTQK 74 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG ++ VTH SL+ ++ EDL + RI R + F E KIDG Sbjct: 75 VGGAISTEFTPVTHLRRLESLDNAFSDEDLAAWHARIQRLYGADVG---PFLCELKIDGL 131 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKN 196 + + YE G+ V AA RGDG +GED++ IR I +P L+ + +P ++EVRGEV++ Sbjct: 132 AVALVYENGRLVRAATRGDGRTGEDITPNIRTIRNVPHRLTGDGVPSLLEVRGEVFLPVE 191 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSEIFAKGQ 254 F LN++++ G++P+ANPRNAA+G +R+ +P R L VHG+G + Q Sbjct: 192 GFRRLNEQLLDAGKQPFANPRNAAAGSVRQKDPRVTAQRPLKMIVHGVGVWEGGDPPESQ 251 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 + +++R LG PV+ R GI Y + R Y+IDG+V KVD ++Q+ Sbjct: 252 SAVYERLRELGLPVSERYRVVEDLGGIREYIAYYREHRHDPEYEIDGVVAKVDRIAVQRA 311 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PRW I+ K+ ++ +T+LLDI + +GRTG +TP A ++PV + G+ + ATLH Sbjct: 312 LGSTSRAPRWAIAFKYPPEEVTTKLLDIQVGVGRTGRVTPYAVMKPVVVSGSTVERATLH 371 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N +K + + +GD V++++AG+VIP++V +V+ R + F P+ C Sbjct: 372 NAFEVKR-----------KGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGSEREFVMPTHC 420 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C +R+ + + A RC +C AQ ER+ RDA +IEGLG Sbjct: 421 PECGTRLAYER-----EGDADLRCPNTKSCPAQLRERIFFAAGRDALDIEGLGYVAASAL 475 Query: 495 FKSEDP-AFSIRIPADIFTLQRRQ------------------------QTSTTKIENILG 529 + P IR AD+F L + + + G Sbjct: 476 TQPLPPQEPPIRTDADLFDLTMDRLLPIKTVVRDPDTGLPKLDPQTGEPKVVSFFATVSG 535 Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 + L + + + + L R + +L IRHVG AR+LA+++ S A +A Sbjct: 536 APSKNAEKLLEQLEQAKQRPLWRILVALSIRHVGPPTARALAEHFRSIDAIAAASEEELA 595 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--I 647 +G +IA AI E++ + +E + Sbjct: 596 AVE----------GIGPVIAAAIKEWFSVDWHREIIERWRAAGVRMADEEPAVPEGPRPL 645 Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 E V TGTL R +A E +T G V++ +S+KTD ++VG+NPGSK KA +LG+ Sbjct: 646 EGLTFVITGTLSGYTRDEAGEAITSRGGRVASSVSKKTDFVVVGENPGSKYAKAVKLGIP 705 Query: 708 IMNEEQFLFLLQQYNTTLR 726 ++E+ F LL++ R Sbjct: 706 RLDEQGFQVLLEKGPDAAR 724 >gi|29829290|ref|NP_823924.1| NAD-dependent DNA ligase LigA [Streptomyces avermitilis MA-4680] gi|81719851|sp|Q82JK7|DNLJ_STRAW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|29606397|dbj|BAC70459.1| putative DNA ligase [Streptomyces avermitilis MA-4680] Length = 730 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 216/736 (29%), Positives = 351/736 (47%), Gaps = 61/736 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +AR++ + L ++I H YY P++ D+E+D L R +A+ +P+L P+ Sbjct: 13 PAEAREKHAQLAEQIEEHRFRYYVKDAPVVSDAEFDTLLRSLEALEEEYPEL---RTPDS 69 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+ G V H LSL+ ++ L + R+ + D + F E K Sbjct: 70 PTQKVAGGYETEFTAVQHRERMLSLDNAFDDLGLAAWAERVAKDVGTSDYH---FLCELK 126 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG + + YE G+ AA RGDG +GED++ +R I IP L + P+++E+RGEVY Sbjct: 127 VDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLKGDRIPDLVEIRGEVY 186 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 F LN ++ G KP+ANPRNAA+G LR+ +P TR L+ VHG+G Sbjct: 187 FPMEKFEELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGARQGFDI 246 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + + +R G P R + G+ + R ++ ++IDG+V K+DE L Sbjct: 247 DRLSQAYELLREWGLPTTRYARVVDDLDGVREFIAYYGENRHSVEHEIDGVVVKLDEIPL 306 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ + A Sbjct: 307 QGRLGSTSRAPRWAIAWKYAPEEVNTKLINIRVGVGRTGRVTPYAQVEPVTVAGSEVEFA 366 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+D +K + + +GD V++++AG+VIP+++ +V+ R + F P Sbjct: 367 TLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTERAFVMP 415 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK--- 488 + CP C + + + RC C AQ ERL + R + +IE G Sbjct: 416 AECPECGTPLA-----PAKEGDVDLRCPNARTCPAQLRERLFYLAGRKSLDIEQFGYVAA 470 Query: 489 ---------------QQLDFFFKSEDPAFSIRIP--ADIFTLQRRQQTSTTK-----IEN 526 + D F + + I+ L +R + + N Sbjct: 471 AALTKPLEPAEPPLLDEGDLFDLTIERLLPIKAYVLDQDSGLPKRDPKTGEEKVATVFAN 530 Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 G + ++ D+I + L R + L IRHVG A +LA+ + S Q Sbjct: 531 QQGEPRKNAISMLDNIAAAKERPLARILTGLSIRHVGPVAAEALARAFRSIDRIDQATE- 589 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVS 644 L VG I+A A+ +++ + + E Sbjct: 590 ---------EELKDTDGVGPIVAAAVKQWFAEDWHREIIRKWKAAGVRMEDERSGEDEGP 640 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 +E +V TGTL+ R A+E + GA V+ +S+KT ++VGDNPGSK +KA QL Sbjct: 641 RPLEGLTVVVTGTLEHHTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQL 700 Query: 705 GVKIMNEEQFLFLLQQ 720 V ++NE F LL+Q Sbjct: 701 KVPVLNEAGFAVLLEQ 716 >gi|227503896|ref|ZP_03933945.1| NAD-dependent DNA ligase LigA [Corynebacterium striatum ATCC 6940] gi|227199519|gb|EEI79567.1| NAD-dependent DNA ligase LigA [Corynebacterium striatum ATCC 6940] Length = 680 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 208/709 (29%), Positives = 342/709 (48%), Gaps = 49/709 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++ S L QE+ H + YY +P I D+++D L +R + P+LA P+ P Sbjct: 12 DIQRKWSELAQEVRKHRELYYN-GEPSIPDADFDELFQRLLKLEAEHPELAV---PDSPT 67 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G + H SL+ ++N +++ ++ R + + E KID Sbjct: 68 QQVGAAP-EGAADIEHLERLYSLDNVFNESEMQDWLDRT---------PAQTYLTELKID 117 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRGEV 191 G I + Y GK AA RGDG GED++A + I IP LS P ++EVRGEV Sbjct: 118 GLSIDLVYRDGKLTTAATRGDGRVGEDITANAKVITDIPHELSGTDEYPVPALVEVRGEV 177 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 Y+ ++F +N G+ +ANPRNAA+G LR +P + R L+ HG+G Sbjct: 178 YMRPDEFAEINAARREDGKPTFANPRNAAAGGLRMKDPNEVKKRRLHMVCHGIGARDGFQ 237 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q++ Q + GFPV+ +Q + + R +++DGLV KVD+ + Sbjct: 238 PSSQHDAYQALEAWGFPVSPYTKQVKSAAAVQKEIKHWAEHRHDAYFEMDGLVVKVDDLA 297 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+ LG +R+PRW I++K+ ++ +T+LLDI++ +GRTG +TP A +EPV + G+ ++ Sbjct: 298 SQRALGATSRAPRWAIAYKYPPEEVTTKLLDIEVGVGRTGRITPFAVMEPVFVSGSTVSK 357 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN+ +K + + +GD +++++AGE+IP+V+ ++ R + F Sbjct: 358 ATLHNQFEVK-----------NKGVMIGDTIIIRKAGEIIPEVLGPVLELRDDSVYEWVF 406 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C +++ RC +C AQ RL++ SR +IE LG++ Sbjct: 407 PENCPSCGTKLA-----PQKDGDQDWRCPNTRSCPAQLSARLEYLASRKGMDIEALGEKA 461 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +S + AD+F L + ++ G + L ++ R Sbjct: 462 AVDLIES----GVLVDEADLFDLDEEKLLKSSAYTTKAGKLNAQGKKLLKNLESARQTDF 517 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R + SL IRHVG AR+LA Y S + + L VG IIA Sbjct: 518 WRVLVSLSIRHVGPIAARALATRYRSMEALRAASES----------ELADTDGVGGIIAA 567 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 + +++ + VE + +E +V TGTL+ R A+E + Sbjct: 568 SFKAWFEEDWHRNIVEKWAAAGVTMEDTATEQHEQTLEGLTIVVTGTLENFSRDSAKEAI 627 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G S +S+KTD ++VG+N GSK KA++LG+ I++E F LL+ Sbjct: 628 ITRGGKASGSVSKKTDYVVVGENAGSKETKARELGLTILDEAGFQRLLE 676 >gi|88809499|ref|ZP_01125007.1| DNA ligase [Synechococcus sp. WH 7805] gi|88786718|gb|EAR17877.1| DNA ligase [Synechococcus sp. WH 7805] Length = 692 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 218/728 (29%), Positives = 360/728 (49%), Gaps = 56/728 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + L Q ++ YY P + D+ YD L R + A P+L + + P + Sbjct: 2 QERAAELRQLLNRAAHAYYVLDAPDLEDAVYDRLYRELLDLESAHPELVEA---DSPTQR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----NSIFFTLEP 132 +GG VTH +P SL+ ++ ++LR + TR+ + ++ ++ E Sbjct: 59 VGGSPAEGFRSVTHRVPLFSLDNAFSADELRGWYTRLIKVLDREPPSDSPLPALAMVGEL 118 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEV 191 KIDG + + YE G V AA RGDG GE+++A +R I +IP L + P +EVRGE Sbjct: 119 KIDGNALALSYENGVLVRAATRGDGDQGEEITANVRTIASIPLRLHLDHPPAWVEVRGEA 178 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEI- 249 I + F A+N E A +ANPRNA +G LR+L+P R L+FF + L E Sbjct: 179 LIPDSTFAAINGERAARDEPLFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPEEWS 238 Query: 250 --FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 Q+E L+ + GF VN + ++++ S R L Y DG+V K++ Sbjct: 239 GQRPASQWESLRWLEDAGFRVNPNAALLPNLEAVEQFFSDWDSRRHDLNYATDGVVVKLN 298 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + LQ G ++PRW I+ K+ ++A +RLL + Q+GRTG++TPVA EPV++ G Sbjct: 299 DLRLQDAAGFTQKAPRWAIALKYPAEEAPSRLLKLTCQVGRTGVVTPVAEFEPVSLAGTS 358 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN D ++ L D+ GD ++V++AGE+IP+V+ ++ R A P Sbjct: 359 VSRATLHNADRLQEL-----------DLHSGDTIIVRKAGEIIPEVLRVLPELRLEGALP 407 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P CP C S +VR+ AA RC +C A L+H+VS+ A +++GLG Sbjct: 408 LELPHHCPSCGSDLVRESGE------AATRCVNS-SCPAILSGALRHWVSKGALDVDGLG 460 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ + +R AD++ L TS + G+ S +NL ++ + R+ Sbjct: 461 SKLIEQLVER----GLVRSIADLYRLDTALLTS------LERMGEKSASNLVAALEQSRS 510 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R ++ LGI HVG A++LA + + A ++ + +G Sbjct: 511 QPWSRQLYGLGIHHVGEVNAKALASAFPDADSLADA-------AVLQPEAITGLHGIGPE 563 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--------NVSSEIENKKLVFTGTLQ 659 IAQ++ +++ N ++ L ++ N S ++ + V TGTL Sbjct: 564 IAQSLQQWFSTSANQDLLQQLRDVGLTLAASDQERQTLADRSNGSGQLSGQTFVLTGTLP 623 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R +AQ + G VS +S+KT ++ GD GSKLEKA+ LGV +++E + L+Q Sbjct: 624 SLSRSQAQALIEAAGGKVSGSVSKKTSFVVAGDEAGSKLEKAKSLGVSVLDEAALMLLIQ 683 Query: 720 QYNTTLRI 727 ++ Sbjct: 684 DSADSIHP 691 >gi|51473890|ref|YP_067647.1| NAD-dependent DNA ligase LigA [Rickettsia typhi str. Wilmington] gi|81389976|sp|Q68W27|DNLJ_RICTY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|51460202|gb|AAU04165.1| DNA joinase [Rickettsia typhi str. Wilmington] Length = 693 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 269/712 (37%), Positives = 422/712 (59%), Gaps = 29/712 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ +S ++A+K L L +I+ ++ YY P++ DSEYD L + + FP L S Sbjct: 4 IDLISEKEAKKLLEELADKIAMYNHAYYIEDNPLVSDSEYDQLFNLNLKLENTFPHLVLS 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 N P KIG ++ KV H P LSL ++ ED+R F+ RI F + + I Sbjct: 64 ---NSPSKKIGAKITNKFAKVIHQAPMLSLSNAFDEEDIRDFLERIKNFLRINEFTPI-- 118 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 EPKIDG + Y+ G F+ A RGDG+ GED++ I+ I P N PE +EVR Sbjct: 119 FCEPKIDGLSFSAIYKHGLFITGATRGDGYVGEDITINIKTIKNFPH-KIDNAPEFLEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE+YI K DF+ LN E A R +ANPRNAA+G +R+L+ R L +F++ G T Sbjct: 178 GEIYIEKQDFVNLNKEQEAQNRGKFANPRNAAAGSIRQLDVAITAQRPLKYFIYSGGVTE 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + A Q ++L K++ L F VN + A++ I ++Y +K+ R LPY+IDG+VYK++ Sbjct: 238 KNLASTQEQLLAKLKALSFSVNEISKLASSEEEIFAFYEYLKTNRHNLPYEIDGVVYKLN 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 F++Q ++G ARSPR+ I+HKF T+LL I +Q+GRTG+LTPVA L+P+ IGG + Sbjct: 298 NFAMQNRMGFIARSPRFAIAHKFPAIIGQTKLLSITVQVGRTGMLTPVAELDPLEIGGVV 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN I +D+R+ D V ++RAG+VIP++ + +++R D Sbjct: 358 VSRATLHNFQDIAR-----------KDVRIKDYVFLQRAGDVIPQITGVDISKRSNDTVK 406 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P FCP C S++ RC GL C AQ ER+ HFVS++A +I GLG Sbjct: 407 FDTPVFCPSCNSKLRY------VSEDIIIRCDNGLNCPAQNYERICHFVSKNAMDIAGLG 460 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q+ F I P DIF L+++ +T+ ++EN+ G+G SV NL+ +I K + Sbjct: 461 RKQVAFLIDKR----LISNPLDIFFLKKKNETNLIRLENMDGWGKKSVANLWQNIEKSQK 516 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 ISL+RFI++LGIRH+G + A+ LA+ ++SY NF ++ + +++D + L + +GD Sbjct: 517 ISLQRFIYALGIRHIGEQNAKLLAREFVSYNNFIAQMELLSKNDSDVYQKLNDLEGIGDK 576 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + I++F+ NI ++ L ++ + + + + K LVFTG+L+ I R +A+ Sbjct: 577 MLVDIIDFFYVKENIQLIKKLGAVLNIEDYKETREQN-ILTGKILVFTGSLKTISRVEAK 635 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 E +LGA V++ +S TD++IVG N GSKL+KA++L +KI++E ++L ++ Sbjct: 636 EIAEKLGAKVASSVSSNTDLLIVGVNGGSKLKKAKELNIKIIDEAEWLAFIK 687 >gi|224539983|ref|ZP_03680522.1| hypothetical protein BACCELL_04895 [Bacteroides cellulosilyticus DSM 14838] gi|224518409|gb|EEF87514.1| hypothetical protein BACCELL_04895 [Bacteroides cellulosilyticus DSM 14838] Length = 694 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 228/713 (31%), Positives = 366/713 (51%), Gaps = 53/713 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A++ A++++ L E+ H+ YY + P I D E+D + R + P+ +D Sbjct: 29 AMT---AKEKIDQLRAELHRHNYNYYVLNAPEISDKEFDDMMRELQDMEREHPEY---QD 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++G ++N + +VTH P LSL ++ ++ F R + + Sbjct: 83 ETSPTMRVGSDLNKNFTQVTHKYPMLSLGNTYSEGEVSDFYDRTQKAL----NEDFEICA 138 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K DGT I++ YE GK + A RGDG G+DV+ ++ I TIP VL + P++ E+RGE Sbjct: 139 ELKYDGTSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGDYPQLFEIRGE 198 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 + + F LN E A +ANPRNAASG L+ N + E+ Sbjct: 199 ILMPWEVFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGEELP 258 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 G YE LQK GF +++ +++ ++ + Y + + R LP DG+V KV+ Sbjct: 259 CDGHYENLQKAAQWGFKISDHMKKCHSLQEVFDYIHYWDTERKNLPVATDGIVLKVNSLK 318 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 QK LG A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ Sbjct: 319 QQKNLGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTIVKR 378 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFS 429 A+LHN D I+GL D+ VGD V V++ GE+IPK+ + + R + Sbjct: 379 ASLHNADIIEGL-----------DLHVGDMVYVEKGGEIIPKITGVDKDARSMMVGEKVK 427 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 F + CP C S+++R AAH C AC Q +++HF+SR A NI+GLG + Sbjct: 428 FITHCPECGSKLIRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPE 481 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D F++ I+ AD++ L + + GD S N+ I + + + Sbjct: 482 TVDMFYR----LGLIKDTADLYKLTVDDIKN------LDRMGDKSAENIVKGIAQSKEVP 531 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 ER +F+LGIR VG +A+ +AK + + D LI + +G+ IA Sbjct: 532 FERALFALGIRFVGETVAKKIAKSFTDIEELENA----------DLERLINIDEIGEKIA 581 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKA 666 Q+I+ ++ NP N +E L K R E+++S ++ + +V +G R + Sbjct: 582 QSIISYFANPLNRELIERL-KIAGLQFSRKEEDLSGYTDKLAGQSIVISGVFTHHSRDEY 640 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 ++ + + G +S KT I+ G+N G +KLEKAQ+LGV+IM+E++FL L+ Sbjct: 641 KDLIEKNGGKNVGSISAKTSFILAGENMGPAKLEKAQKLGVQIMSEDEFLALI 693 >gi|291513768|emb|CBK62978.1| DNA ligase, NAD-dependent [Alistipes shahii WAL 8301] Length = 674 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 217/705 (30%), Positives = 366/705 (51%), Gaps = 48/705 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 R+ + L +++ H+ YY + P I D E+DA+ R + A P+ A DPN P Sbjct: 2 VRERIEELRRQLELHNFKYYVENAPEISDFEFDAMMRELQDLERAHPEYA---DPNSPSV 58 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G ++ V H LSL +++++L +FI RI R D + E K DG Sbjct: 59 RVGSDLTAEFRTVKHRYAMLSLGNTYSLDELHEFIGRIEREAGATD-----YVCELKFDG 113 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195 T I++ YE G+ V A RGDG G+DV+A +R + T+P L + P++ E+RGE+ + Sbjct: 114 TAISLTYEHGRLVRAVTRGDGVEGDDVTANVRTVRTVPLRLRGTDWPDLFEIRGEILMPY 173 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 F LN E A G + +ANPRNAA+G L++ + + R E+ + Sbjct: 174 ASFDRLNAEREANGEQLFANPRNAAAGTLKQQSSAVVARRGLDCTLYQLAGDELPFTSHW 233 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L+K R GF V++ R + I ++ + R LP+ DG+V KV++F++++QL Sbjct: 234 ESLEKARQWGFKVSDAARICRSVAEIDAFIEHWDTARRRLPFPTDGVVIKVNDFAVRRQL 293 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A++P+W +++KF ++A+TRL + Q+GRTG +TPVA LEPV + G + ATLHN Sbjct: 294 GFTAKAPKWAVAYKFKAERAATRLDSVSFQVGRTGAITPVANLEPVLLAGTTVRRATLHN 353 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 + + L DIR GD V V++ GE+IPK++ + + +R D++PF + + CP Sbjct: 354 AEQMAQL-----------DIRPGDTVYVEKGGEIIPKIIGVDLAQRPADSRPFEYITVCP 402 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + +VR A H C C Q + R+ HF+ R A +IEGLG++ ++ + Sbjct: 403 ECGTPLVRYEGE------AKHYCPNQSGCRPQIIGRIIHFIRRKALDIEGLGEETVELLY 456 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 ++ +R AD++ L+ Q + + G+ S N+ S+ + + + +R +F Sbjct: 457 EN----GLVRDVADLYDLRAEQ------LAPLPRLGEKSADNIIRSVERSKAVPFQRVLF 506 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIR VG A+ LA+++ S + L+ VG IA AI+E+ Sbjct: 507 GLGIRFVGETTAKYLAEHFRSLDAVMRATR----------EELVEADEVGGRIADAIIEY 556 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + N+ + L + S + + V +G + R + +E + G Sbjct: 557 FAEEDNLRIIRRLRAAGLQFEAEARRLASEALAGRSFVVSGKFTR-SRDEMKELIELHGG 615 Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 A +S D ++ GD G +KL+KA++LGV+I++EE+F+ +++ Sbjct: 616 RNLAAVSGSVDYLVAGDKMGPAKLKKAEKLGVRIISEEEFIAMIE 660 >gi|309777086|ref|ZP_07672052.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 3_1_53] gi|308915156|gb|EFP60930.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 3_1_53] Length = 665 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 234/700 (33%), Positives = 362/700 (51%), Gaps = 47/700 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + L + + YY +P + D EYD + A+ +P DPN + Sbjct: 3 QQRILELRKILDRLAYEYYVLDQPSMSDQEYDRYYQELVALEEKYPQY---RDPNSITQR 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + + KV H LSL +N++DL F R+ + KIDG Sbjct: 60 VGGVVLDAFTKVEHKRTMLSLGNAFNLDDLHAFDERVREVVPRVRYVVE-----LKIDGL 114 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +++ Y G+FV A RGDG GEDVS ++ I +IP + + +EVRGEVY+ Sbjct: 115 AMSLIYRDGRFVQALTRGDGVVGEDVSHNVKTIASIPMN--IPLQGEVEVRGEVYMPNAS 172 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 F LN E G + +ANPRNAA+G +R+L+ + R L+ F + E E Sbjct: 173 FDMLNAEREKNGEELFANPRNAAAGSIRQLDSSIAAKRKLDAFWYYFVNAQEYDIHSHEE 232 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+KM + VN + ++ + ++ E+ R+TLPY IDG+V KVD+ Q +LG Sbjct: 233 ALEKMSEMHLRVNPLRKVCDSIAEVWAFIEEITKQRNTLPYAIDGMVIKVDDLDAQNRLG 292 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + PRW I++KF ++ T+LLDI + +GRTG +TP A LEPV + G ++ A LHNE Sbjct: 293 STVKVPRWAIAYKFPAEEVVTKLLDIVVTVGRTGRITPNAVLEPVRVAGTTVSAAQLHNE 352 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D IK +DIR+ D V+V++AG++IP+VV +V R+ + FP+ CPI Sbjct: 353 DMIK-----------EKDIRIQDDVVVRKAGDIIPEVVRPLVERRNDTQAVYHFPTHCPI 401 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR AAH C C A+ +E + HF SRDA +I+ LG ++++FF K Sbjct: 402 CGSELVRFPEE------AAHYCIN-QDCPARVVESMIHFASRDAMDIDTLGDKKIEFFHK 454 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + DI+ L+ +Q ++ ++ GF + SV L D+I + LE ++ Sbjct: 455 Q----GFLNTIEDIYCLKEHKQ----ELIDLEGFKEKSVAKLLDAIEDSKKNPLEDLVYG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG + A+ LAK +L+ L+ + +G I A++I F+ Sbjct: 507 LGIRQVGKKAAKVLAKQFLTMDALMAA----------SVEELVAIKDIGQITAESITAFF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 P+N+ + L E+ S+ K +V TGTL ++ R+ A+ + LGA Sbjct: 557 HEPKNMELIAHLKGYGLRMDTEAEQIQESQFSGKTVVLTGTLTQMTRNDAKALLESLGAN 616 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 VS +S+KTD++I G+ GSKL KA LGV M+E+ F+ Sbjct: 617 VSGSVSKKTDLVIYGEAAGSKLTKANSLGVMTMDEDTFMK 656 >gi|220912112|ref|YP_002487421.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6] gi|254778146|sp|B8HFJ3|DNLJ1_ARTCA RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 1 gi|219858990|gb|ACL39332.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6] Length = 770 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 216/742 (29%), Positives = 359/742 (48%), Gaps = 61/742 (8%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E++ + R+E +L I + YYQ P++ D+E+D L RR + I P+L + Sbjct: 22 ESIPSDAIREEYENLSDLIRKYRFAYYQDDAPLVSDAEFDTLFRRLEEIEALHPELVAN- 80 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--SIF 127 + P ++GGE + + V H SLE +++IE+L ++ R K D Sbjct: 81 --DSPTQEVGGEASAAFAAVEHLQRMYSLEDVFSIEELEAWLNRAEASIAKLGDGTAQAA 138 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 + E KIDG + + Y GK V AA RGDG +GED++ + I IP+ LS P +E Sbjct: 139 WLTELKIDGLAVNLLYRDGKLVRAATRGDGTTGEDITHNVLTIKEIPQQLSGEGYPSEVE 198 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245 VRGEV+I F N+ +I G+ P ANPRNAA+G LR+ +P + R L FVHG+G Sbjct: 199 VRGEVFIPSKAFAEFNEALIEAGKAPLANPRNAAAGSLRQKDPAETAKRPLKMFVHGIGA 258 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + A+ Q E ++ G PV+ ++ + ++ R L ++IDG+V K Sbjct: 259 REGLEARSQSETYALLKEWGLPVSPYFEVLEARADVLGFISKYGEQRHKLLHEIDGIVIK 318 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+F+ Q+ LG R PRW +++K+ ++ T+LLDI + +GRTG +TP +EPV + G Sbjct: 319 VDDFATQRALGYTTRVPRWAVAYKYPPEEVHTKLLDIQVNVGRTGRVTPFGMMEPVKVAG 378 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH--- 422 + + ATLHN+D +K + +++GD V++++AG+VIP++V ++ R Sbjct: 379 STVEMATLHNQDVVK-----------AKGVKIGDIVVLRKAGDVIPEIVGPVLALRDQQD 427 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P + F P+ CP C + + + RC G +C +Q ER+ H R F+ Sbjct: 428 PPVRDFVMPTECPACGTPLA-----PAKEGDVDIRCPNGKSCPSQLRERVFHLAGRGGFD 482 Query: 483 IEGLGKQQLDFFFKSEDPA-FSIRIPADIFTLQRRQ------------------------ 517 IE LG + + +P + A +F L R Sbjct: 483 IEALGWEAAIALTQPAEPDVPPLTSEAALFDLTREDLADVKIRREKRSKGVATGEYELVP 542 Query: 518 QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577 + S L+ ++K ++ L R + +L IRHVG +R+LA+ + + Sbjct: 543 YFYSKGTAKSPSKPTASTEKLFKELDKAKSQPLWRVLVALSIRHVGPRASRALAQAFGTM 602 Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637 L V VG IA A+ E++ + V+ Sbjct: 603 DGIRAASE----------EELAHVDGVGPTIAAALKEWFAEDWHREIVDRWAAAGVRMED 652 Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697 +++ +E +V TG+L R +A+E + G S +S+ T ++ G++ G+K Sbjct: 653 ERDESTPRTLEGLTVVVTGSLPNFSRDEAKEAILVRGGKASGSVSKNTSYVVAGESAGTK 712 Query: 698 LEKAQQLGVKIMNEEQFLFLLQ 719 L+KA+QLG+++++E+ F LL Sbjct: 713 LDKAEQLGIRVLDEDGFRLLLD 734 >gi|327402054|ref|YP_004342892.1| DNA ligase [Fluviicola taffensis DSM 16823] gi|327317562|gb|AEA42054.1| DNA ligase [Fluviicola taffensis DSM 16823] Length = 670 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 222/712 (31%), Positives = 353/712 (49%), Gaps = 49/712 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++ +A+ ++ L +E++ H+ YY S P I D E+D L + + FP+LA Sbjct: 1 MNLSEAQLKIEQLTKELTLHNHNYYVESNPTISDYEFDVLLKELQDLETQFPELASDL-- 58 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P ++GG++ V H P LSL ++ E++ ++ R+ + I + E Sbjct: 59 -SPTKRVGGDITKKFATVVHKFPMLSLSNSYSEEEIIEWEQRLKKL----ATGPIEYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG I IRY GKF A RGDG GED+SA ++ I TIP L + P+ E+RGE+ Sbjct: 114 LKYDGVAIGIRYVNGKFARAVTRGDGTKGEDISANVKTIRTIPLTLKGDYPDDFEIRGEI 173 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 + K +F A+N + +G +ANPRN+ASG L+ + + ++ Sbjct: 174 FFPKANFEAMNRQREELGEPVFANPRNSASGTLKSQDSKVVAERGLDCFLYGVYGDDLLM 233 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQA----NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + E +QK + GF + + GI+ + + R LP++IDG+V KV+ Sbjct: 234 ESHLESIQKAQEWGFKTPQEKNKYILNTFSIEGIMEFIHYWDKERYNLPFEIDGIVIKVN 293 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + Q LG A+SPRW I++KF ++ ST L ++ Q+GRTG +TPVA L PV +GG + Sbjct: 294 NYDQQADLGFTAKSPRWAIAYKFKAERVSTTLKEVTYQVGRTGAITPVANLIPVLLGGTV 353 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + A+LHN D I+ L D+ + D V V++ GE+IPK+V + + R +A+ Sbjct: 354 VKRASLHNADQIEKL-----------DLYLEDSVYVEKGGEIIPKIVGVQTDSRPVNAEK 402 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F CP C S + R H C L C Q R++HF+SR A NI+GLG Sbjct: 403 VIFIERCPECNSELQRREGE------VQHYCLNDLVCPPQVKGRMEHFISRKAMNIDGLG 456 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + +D +K AD++ L Q + + D S NL I + Sbjct: 457 AETIDLLYKE----GLADSIADLYDLTFDQVVN------LERMADKSANNLIIGIRNSKE 506 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 I ER +F+LGIR VG +A+ LA + + ++ + LI V +G+ Sbjct: 507 IPFERVLFALGIRFVGETVAKKLAYAFNNIDAISKAT----------YDELIAVDEIGEK 556 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 IA A+ +F+Q+ R I +E L S+ +E K V +G K R + + Sbjct: 557 IAIAVQKFFQDERAIQIIERLKIAGVQFEVEEVALDSNSLEGKSFVVSGVFSKFSRDEIK 616 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + + + G +S KT ++ G+N G +KLEKA LG+ I++EE F+ +L Sbjct: 617 DLIEKNGGKNVGSISAKTTYVLAGENMGPAKLEKASSLGIPIISEEDFIQML 668 >gi|325288193|ref|YP_004263983.1| DNA ligase [Cellulophaga lytica DSM 7489] gi|324323647|gb|ADY31112.1| DNA ligase [Cellulophaga lytica DSM 7489] Length = 664 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 217/706 (30%), Positives = 355/706 (50%), Gaps = 47/706 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 ++++ +L +E+ H+ YY P I D ++D + A+ P+ D N P Sbjct: 2 SVKEQIEALREELRKHNHNYYVLDTPTISDYDFDIKLKELQALEAKHPEF---YDANSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GGE+ + V H SL+ ++ EDL + R+ + D++I FT E K D Sbjct: 59 LRVGGEITKNFNTVVHEHRMYSLDNSYSKEDLLDWEKRVEKILG---DSNIEFTCELKYD 115 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I++ YE+GK V A RGDG G+DV+ I+ I ++P L + P ++RGE+ + Sbjct: 116 GASISLTYEEGKLVRAVTRGDGFQGDDVTTNIKTIKSVPLQLKGDYPAKFDIRGEIVLPF 175 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 F +N+E IA G PY NPRN ASG L+ + + + + + + + + Q+ Sbjct: 176 EGFYKMNEERIANGEDPYMNPRNTASGSLKLQDSSLVAQRPLECLLYSVVGANLNLETQF 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L+K R GF V + + ++++ R LPY+ DG+V KV+ Q++L Sbjct: 236 EALEKTRSWGFKVPTVAKLCKSVDEVMAFVEYWDVHRHELPYETDGVVVKVNTLRYQEEL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++SPRW +++KF +Q ST L +I Q+GRTG +TPVA L PV + G + A+LHN Sbjct: 296 GYTSKSPRWAMAYKFKAEQVSTVLNEISYQVGRTGAITPVANLAPVLLAGTTVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+ L D+RVGD V V++ GE+IPK+V + ++ R +++P + CP Sbjct: 356 ADQIEKL-----------DVRVGDAVFVEKGGEIIPKIVGVNLDLRPQNSEPTKYIDHCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + ++R A H C C Q +++HF+SR A +I+GLG + ++ F Sbjct: 405 ECNTELIRTEG------DAKHYCPNEYGCPPQITGKIQHFISRKAMDIDGLGSETVELLF 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 K I+ AD++ L Q + + S NL + I ER +F Sbjct: 459 KE----GLIQNYADLYALTVDQ------LLPLERMAKKSAENLVKGVAASVEIPFERVLF 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG +A+ LAK Y + L L V +G+ IA ++V F Sbjct: 509 ALGIRFVGETVAKKLAKAYKNIDALMYA----------SALELATVDEIGERIASSVVAF 558 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +QN N+ + L EK N + +++ + V +G + + R+ ++ + Sbjct: 559 FQNEINLDIINRLKGYGLQFQVSAEKLLNQTEKLKGETYVVSGVFE-MSRNDLKKLIEDN 617 Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G V + +S KT ++ GD G SK KA+ L V I++E++FL L Sbjct: 618 GGKVGSSISSKTTFLVAGDKMGPSKRTKAESLNVPIISEQEFLAKL 663 >gi|296451892|ref|ZP_06893609.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP08] gi|296879713|ref|ZP_06903688.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP07] gi|296259274|gb|EFH06152.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP08] gi|296429302|gb|EFH15174.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP07] Length = 677 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 222/711 (31%), Positives = 375/711 (52%), Gaps = 50/711 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + E++ L + I+YH++ YY P I D EYD L + ++ P+L R Sbjct: 1 MQKVSIKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRI--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P N++GG+ ++ H P LSL ++ +DLR F R+ + + ++ + +E Sbjct: 58 DSPTNRVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG + + Y G+F A RGDG GED+S + + +IP L +N + + VRGEV Sbjct: 114 FKIDGLSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEV 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 YISK++F +N++ + +ANPRN A+G LR+L+P R L+ FV + + Sbjct: 172 YISKDNFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEDYD 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L+ + LGF V+ + + ++ + R L Y+IDG+V KV+ Sbjct: 232 LESHSDSLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLEYEIDGMVIKVNNIK 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 + ++G A+SPRW I++KF ++ T+++DI +++GRTG +TP A LEPV + G ++ Sbjct: 292 QRDEMGYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNEDYI+ +DI++ D VLV++AG++IP+V+++I ER D F Sbjct: 352 ATLHNEDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C +R AA +C +C AQ + HFVSRDA NI+GLG+ Sbjct: 401 PEKCPVCSEPTIRLEGE------AAVKCINM-SCPAQIRRGIIHFVSRDAMNIDGLGESI 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + + I+ +D++ +++ + G+ S NL +SI K + L Sbjct: 454 ITLLLNEK----IIQDVSDLYYIKKEDVV------ELERMGEKSADNLINSIEKSKENDL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R I LGI+ +G + A+ LA + + + L + G I+A Sbjct: 504 WRLINGLGIKFIGVKAAKILAYNFKDLDDVMSATS----------EQLEELEEFGSIMAN 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++VEF++ +N+ + L S+ + V E K+V TGTL ++R+ A++ Sbjct: 554 SVVEFFKEDKNMNVINKLKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKD 613 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + G ++ +S+ T ++ G+ GSKL KA LG+K+++EE+FL LL+ Sbjct: 614 MIEKRGGKATSSVSKSTTFVLAGEEAGSKLAKANDLGIKVIDEERFLELLK 664 >gi|15604557|ref|NP_221075.1| NAD-dependent DNA ligase LigA [Rickettsia prowazekii str. Madrid E] gi|6225281|sp|Q9ZCK9|DNLJ_RICPR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|3861252|emb|CAA15151.1| DNA LIGASE (lig) [Rickettsia prowazekii] gi|292572364|gb|ADE30279.1| DNA ligase, NAD-dependent [Rickettsia prowazekii Rp22] Length = 689 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 270/712 (37%), Positives = 417/712 (58%), Gaps = 29/712 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ +S ++A+K L L +I+ ++ YY P++ DSEYD L + + FP L S Sbjct: 4 IDLISEQEAKKLLKELADKIAMYNHAYYIEDNPLVSDSEYDQLFNINLKLENTFPHLVLS 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 N P K+G + KV H P LSL ++ +DLR F+ RI F + + I Sbjct: 64 ---NSPSKKVGANITNKFAKVIHQAPMLSLSNAFDEDDLRDFLERIKNFLRINEFTPI-- 118 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 EPKIDG + Y+ G F+ A RGDG+ GED++ I+ I P N PE +EVR Sbjct: 119 FCEPKIDGVSFSAIYKNGLFITGATRGDGYVGEDITMNIKTIKNFPH-KIDNAPEFLEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE+YI K DFL LN E A R +ANPRNAA+G +R+L+ R L +F++ G T Sbjct: 178 GEIYIEKQDFLNLNKEQEAQNRGKFANPRNAAAGSIRQLDVAITAQRPLKYFIYSGGVTE 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + A Q ++L K++ L F VN + A++ I ++Y +K+ R LPY+IDG+VYK++ Sbjct: 238 QNLASTQEQLLTKLKALSFSVNEISKLASSEEEIFAFYEYLKTNRHNLPYEIDGVVYKLN 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 F++Q ++G ARSPR+ I+HKF T+LL I +Q+GRTG+LTPVA L+P+ IGG + Sbjct: 298 NFAMQNRMGFIARSPRFAIAHKFPAIIGQTKLLSITVQVGRTGMLTPVAELDPIEIGGVV 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN I +D+R+ D V ++RAG+VIP++ + +++R D Sbjct: 358 VSRATLHNFQDIAR-----------KDVRIKDYVFLQRAGDVIPQITGVDISKRSNDTVK 406 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P FCP C S++ RC GL C AQ ER+ HFVS++A +IEGLG Sbjct: 407 FDTPVFCPSCNSKLRY------VSEDIIIRCDNGLNCPAQNYERICHFVSKNAMDIEGLG 460 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q+ F I P DIF L+ + +T+ ++EN+ G+G SV NL+ +I K + Sbjct: 461 RKQVAFLIDKR----LISNPLDIFFLKEKNETNLIRLENMDGWGKKSVANLFKNIEKSQK 516 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 ISL+RFI++LGIRH+G + A+ LA+ + SY NF ++ + +++D + L + +GD Sbjct: 517 ISLQRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLSKNDSDIYQKLNDLEGIGDK 576 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 I IV+F+ N ++ L ++ + + + + K +VFTG+L I R +A+ Sbjct: 577 ILVDIVDFFYVKENTQLIKRLGSVLNIEDYQETREQN-ILTGKIVVFTGSLSTISRVEAK 635 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 E +LGA V+A +S TD++I G N GSKL+KA++L +KI++E ++L ++ Sbjct: 636 EIAEKLGAKVTASVSLNTDLVIAGVNGGSKLKKAKELNIKIIDEVEWLAFIK 687 >gi|119961355|ref|YP_947208.1| DNA ligase, NAD-dependent [Arthrobacter aurescens TC1] gi|166215391|sp|A1R4P6|DNLJ_ARTAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|119948214|gb|ABM07125.1| DNA ligase, NAD-dependent [Arthrobacter aurescens TC1] Length = 768 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 223/753 (29%), Positives = 364/753 (48%), Gaps = 65/753 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E R E L + + YYQ P + D+E+D L RR + + P+L + P Sbjct: 31 ESLRDEYEQLADLVRKYRYAYYQEDSPTVSDAEFDELYRRLEELEALHPELV---SNDSP 87 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFTLEP 132 ++GGE++ + V H SL+ ++++++L ++ + K D I + E Sbjct: 88 TQEVGGEVSSAFAAVEHLQRMYSLDDVFSLDELEAWVRKAEASVAKLGDSVPPIAWLTEL 147 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEV 191 KIDG + + Y GK V AA RGDG +GED++ + I IPR LS + P +E+RGEV Sbjct: 148 KIDGLAVNLLYRDGKLVRAATRGDGTTGEDITHNVLTIKEIPRQLSGSGYPSEVEIRGEV 207 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 +I FL N+ ++A G+ P ANPRNAA+G LR+ +P + R L+ FVHG+G + Sbjct: 208 FIPSKAFLEFNESLVAAGKAPLANPRNAAAGSLRQKDPAETAKRPLSMFVHGIGAREGLD 267 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 AK Q E + + G PV+ ++ TF ++ + + R L ++IDG+V K+D+F+ Sbjct: 268 AKSQSESYKLLEEWGLPVSPYLKVLETFDDVLKFIADYGERRHKLVHEIDGIVVKIDDFA 327 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+ LG +R PRW ++K+ ++ T+LLDI + +GRTG +TP +EPV + G+ + Sbjct: 328 TQRALGYTSRVPRWAAAYKYPPEEVHTKLLDIAVNVGRTGRVTPFGLMEPVKVAGSTVGM 387 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP--- 427 ATLHN+D +K + + +GD V++++AG+VIP++V ++ R P Sbjct: 388 ATLHNQDVVK-----------AKGVMIGDIVILRKAGDVIPEIVGPVLALRDKQEPPVRE 436 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P+ CP C + + + RC +C +Q ER+ H SR AF+IE LG Sbjct: 437 FVMPTECPSCGTPLA-----PAKESDVDIRCPNAKSCPSQLRERVFHVASRGAFDIEALG 491 Query: 488 KQQLDFFFKSEDP-AFSIRIPADIFTLQRRQ------------------------QTSTT 522 + + +P + A +F+L R T Sbjct: 492 WEAAVALTQPAEPETPPLTSEARLFSLTREDLADVLIRREKRSKGVGTGEYELVPYFYTK 551 Query: 523 KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582 + L+ + K + L R + +L IRHVG +R+LA + S Sbjct: 552 GTAKSPSKPTATTEKLFAELEKAKQQPLWRVLVALSIRHVGPTASRALATAFGSMDAIRN 611 Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642 +AH V VG IA A+ E++ + V++ + + Sbjct: 612 ATEEQMAH----------VDGVGPTIAVALKEWFAVDWHNEIVDSWAAAGVRMEDERDAS 661 Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702 V +E +V TGTL R +A+E + G S +S+ T ++ G++ G+KL+KA+ Sbjct: 662 VPRTLEGLTVVVTGTLPNFSRDEAKEAIIIRGGKASGSVSKNTSYLVAGESAGTKLDKAE 721 Query: 703 QLGVKIMNEEQFLFLL----QQYNTTLRIHDDD 731 QLGV +++E+ F LL Q T D+ Sbjct: 722 QLGVPVLDEDGFRELLANGPAQTGTEAEAATDE 754 >gi|282889962|ref|ZP_06298497.1| hypothetical protein pah_c008o052 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500155|gb|EFB42439.1| hypothetical protein pah_c008o052 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 668 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 228/711 (32%), Positives = 382/711 (53%), Gaps = 46/711 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + + L +I H+ YY +P+I D E+D L + + + P+ S Sbjct: 1 MTKPSSHQSYQELCNQIWSHNKAYYVDHRPVISDEEFDHLMHQLEQMEKEHPEWISSA-- 58 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P ++G + V H P LSL ++ ++++ FI R+ + + +D + F+ E Sbjct: 59 -SPTQRVGEMLTEGFQTVAHRTPMLSLANSYSKDEVQDFIHRVKKLTRSQD---VAFSCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190 K+DG I+ ++EKG FV RGDG G+D++ +R + P L P+ +EVRGE Sbjct: 115 LKMDGIAISAQFEKGIFVRGITRGDGKKGDDITQNLRTVAAFPLQLIGPSAPDFLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEI 249 +++ K F LN E G +ANPRNAA+G L+ L+P + R L+ +G+G+ S+ Sbjct: 175 IFMPKQVFQKLNAEKELEGEDLWANPRNAAAGSLKLLDPNETRRRKLDVVFYGIGQDSQD 234 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q+ ++ G P+ + V + +T I + +++++R++LP++IDG+V K+D Sbjct: 235 ALTSQFACHALLKSYGLPILHQVEKCHTLEEIWEFVEKVRTLRASLPFEIDGVVVKLDSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + QK+LG ++PRW +++KFA +QA T + I +Q+GRTG+LTPVA L+PV + G+ I Sbjct: 295 AEQKRLGSTGKNPRWAVAYKFAAEQAETDIYSITVQVGRTGVLTPVAELKPVFLAGSTIA 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHNE+ + +DIR GD V++++ G+VIPKVV + ++R D+ P+ Sbjct: 355 RATLHNEEEV-----------LRKDIREGDSVIIEKGGDVIPKVVSVNFDKRKSDSHPWK 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + V R ++ A +C L C QQL RL +F + A +IE +G++ Sbjct: 404 MPTHCPSCGALVARSVDE------VAVKCPNTLHCPEQQLRRLIYFAGKFAMDIEHMGEK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ + ++ P+DI+ L Q + GF SV NL SI K +++S Sbjct: 458 VVEQLVR----LGFVKRPSDIYALTSEQLF------QLEGFKTKSVENLITSIEKSKDVS 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RFI +LGI+HVG A LAK + Q L+++ +G+ +A Sbjct: 508 FSRFIMALGIKHVGEGTAELLAKRAGNVHILMQ----------MTTEELLQIEGIGEKVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQE 668 AIVE++ + RN ++ LL+ + + K V TGTL++ R A Sbjct: 558 TAIVEYFADARNQEEIQLLLQRGVLPQEVKSISHKGHPFDAKTFVLTGTLKQYTRPAAAT 617 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + G V+ +S KTD ++ G++PGSKL+KA+ L V+I+ EE+F +L Sbjct: 618 LIKERGGKVTNSVSSKTDYLLAGEDPGSKLDKAKSLQVRILTEEEFQAMLD 668 >gi|149372321|ref|ZP_01891509.1| putative DNA ligase [unidentified eubacterium SCB49] gi|149354711|gb|EDM43274.1| putative DNA ligase [unidentified eubacterium SCB49] Length = 677 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 219/719 (30%), Positives = 359/719 (49%), Gaps = 59/719 (8%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 +++ L +E+ ++ YY + D E+D + + A P+ D N P Sbjct: 3 IEQQIKELREELRAYNYQYYVLDNATVSDFEFDQKLKELQQLEDAHPEYF---DANSPTQ 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GGE+ + V H+ SL+ ++ EDL + TR+ + D + + E K DG Sbjct: 60 RVGGEITKNFETVKHNFRMYSLDNSYSKEDLEDWETRVKKMV----DGDVNYACELKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 +++ YEKG V A RGDG G++V+A ++ I ++P L + PE+ E+RGE+ + + Sbjct: 116 ASMSLTYEKGVLVRAVTRGDGFQGDNVTANVKTIKSVPLQLKGDYPELFEIRGEIVLPFD 175 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 F A+N+E IA G +PY NPRN ASG L+ + ++ + + +++ Q E Sbjct: 176 GFNAMNEERIAAGEEPYRNPRNTASGSLKLQDSAEVAKRPLDCLLYSLVANKLPVATQME 235 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+K GF V + A++ ++ + N R LPY+ DG+V KV+ Q++LG Sbjct: 236 GLKKASDWGFKVPPVAKLASSIEEVLEFVNYWDKHRHELPYETDGVVVKVNSLQQQEELG 295 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++SPRW +++KF +Q ST L +I Q+GRTG +TPVA L+PV + G + A+LHN Sbjct: 296 YTSKSPRWAMAYKFKAEQVSTVLEEITYQVGRTGAITPVANLQPVELAGTTVKRASLHNA 355 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L DIR D V V++ GE+IPK++ + + ER D+QP + S CP Sbjct: 356 DQIEKL-----------DIRERDTVYVEKGGEIIPKIIGVNLEERPEDSQPTKYISQCPD 404 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + +VR A H C CS Q + R++HF+SR A +IEGLG + + Sbjct: 405 CHTALVRTEG------DAKHYCPNEEGCSTQIIGRIQHFISRKAMDIEGLGGETVALLVN 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD++ L I + S NL + ++K + I ER +F+ Sbjct: 459 E----GVIKNYADLYALTVED------ILPLERMAQKSAENLVEGVSKSKEIPFERVLFA 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG +A+ LAK++ S + + LI V +GD IA++++ F+ Sbjct: 509 LGIRFVGETVAKKLAKHFKSIDALMEA----------SFEQLIAVDEIGDRIAESVLAFF 558 Query: 617 QN------------PRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQ 662 + + VE L E+ + V +G K+ Sbjct: 559 KIETQDLFSEIKQGETHREVVERLRAYGVQLAISEEELAGQTDTLAGSTFVVSGVFAKVS 618 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 R + ++ + G VS +S+KT ++ GD G SK KA++LGV I+ E+ FL ++ + Sbjct: 619 RTELKKLIEDNGGKVSGSISKKTSYVVAGDKMGPSKRTKAEELGVVIITEDDFLAMIAK 677 >gi|163789388|ref|ZP_02183827.1| DNA ligase, NAD-dependent [Carnobacterium sp. AT7] gi|159875242|gb|EDP69307.1| DNA ligase, NAD-dependent [Carnobacterium sp. AT7] Length = 673 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 240/720 (33%), Positives = 369/720 (51%), Gaps = 53/720 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + E A++ + L + + YY P I D++YD L A+ FPDL Sbjct: 1 MSTQDFESAKQRVFDLRTLLDKYSYEYYVKDTPSIPDADYDKLYHELVALEEEFPDLI-- 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P ++GG + KV H +P LSL +N DL F RI + D + Sbjct: 59 -SNDSPTQRVGGTILPGFEKVVHEVPMLSLGNAFNEGDLLDFDRRIKKL----TDKPFSY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 E KIDG ++++YEKGK V AA RGDG GE+V+ IR + ++P L IEVR Sbjct: 114 ICELKIDGLAVSLKYEKGKLVRAATRGDGTVGENVTQNIRTVKSVPLRLKNAYS--IEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247 GE Y+ K+ F+ LN + G +ANPRNAA+G LR L+ + R LN F++ +G Sbjct: 172 GECYMPKDSFIKLNQDREENGEAIFANPRNAAAGGLRNLDTKETAKRNLNTFLYTVGDFG 231 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ A Q + L ++ LG N R T + +Y E + R+ LPY+IDG+V KV+ Sbjct: 232 ELTAISQEDALHQLDELGLRTNQDRRVFQTIEEVWAYTQEFQEKRTALPYEIDGIVIKVN 291 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 EF +QK++G ++PRW I++KF ++A T + DI+ +GRTG++TP A ++PV + G Sbjct: 292 EFDVQKEVGFTVKAPRWAIAYKFPAEEAHTVIRDIEWSVGRTGVVTPTAIMDPVQLAGTT 351 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + A+LHNED I RDIR+ D V+V +AG++IP+V ++++ER ++QP Sbjct: 352 VQRASLHNEDLIH-----------ERDIRLLDTVVVHKAGDIIPEVTRVVLDERPEESQP 400 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + P+ CP C S ++ A RC C AQ E L HFVSR+A NI+GLG Sbjct: 401 YLIPTHCPACDSELIHLEEE------VALRCMNPK-CPAQITEGLSHFVSRNAMNIDGLG 453 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + L F+ E + AD++TL Q + + + S NL +I+ R+ Sbjct: 454 IKVLLQMFEKE----MVHDVADLYTLTFNQLVT------LDKIKEKSANNLLTAIDASRS 503 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SLER +F LGIRHVGA+ A+ +A+ + + + Q I + Sbjct: 504 NSLERLLFGLGIRHVGAKAAKLIAERFETIEAVQQAEKEAIIAIEGIGEIIA-------- 555 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPS-----IGRHEKNVSSEIENKKLVFTGTLQKIQ 662 ++V ++ P ++ L V S K +V TG L Sbjct: 556 --DSVVAYFSLPEVTELIQELKNSQVNMTYLGKKKEEVATVDSYFNGKTIVLTGKLTHFT 613 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 R +A+E + LG V+ +S+KTD+++ G+ GSKL+KA+ L + + +E+Q L L+ Sbjct: 614 REEAKERIENLGGNVTGSVSKKTDLVVAGEEAGSKLDKAESLNILVWDEDQLLKALEGEE 673 >gi|126700928|ref|YP_001089825.1| DNA ligase [Clostridium difficile 630] gi|123362868|sp|Q180F3|DNLJ_CLOD6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 677 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 225/711 (31%), Positives = 374/711 (52%), Gaps = 50/711 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + E++ L + I+YH++ YY P I D EYD L + ++ P+L R Sbjct: 1 MQKVSVKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRI--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P N++GG+ ++ H P LSL ++ +DLR F R+ + + ++ + +E Sbjct: 58 DSPTNRVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG + + Y G+F A RGDG GED+S + + +IP L +N + + VRGEV Sbjct: 114 FKIDGLSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEV 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 YISK++F +N++ + +ANPRN A+G LR+L+P R L+ FV + E Sbjct: 172 YISKDNFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEEYD 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + E L+ + LGF V+ + + ++ + R L Y+IDG+V KV+ Sbjct: 232 LESHSESLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLDYEIDGMVIKVNNIK 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 + ++G A+SPRW I++KF ++ T+++DI +++GRTG +TP A LEPV + G ++ Sbjct: 292 QRDEMGYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNEDYI+ +DI++ D VLV++AG++IP+V+++I ER D F Sbjct: 352 ATLHNEDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C +R AA +C +C AQ + HFVSRDA NI+GLG+ Sbjct: 401 PEKCPVCSEPTIRLEGE------AAVKCINM-SCPAQIRRGIIHFVSRDAMNIDGLGESI 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + + I+ +D++ +++ + G+ S NL +SI K + L Sbjct: 454 ITLLLNEK----IIQDVSDLYYIKKEDVVD------LERMGEKSADNLINSIEKSKENDL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R I LGI+ +G + A+ LA + + L + G I+A Sbjct: 504 WRLINGLGIKFIGVKAAKILAYNFKDLDEVISATS----------EQLEELEEFGSIMAN 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++VEF++ +N+ + L S+ + V E K+V TGTL ++R+ A+E Sbjct: 554 SVVEFFKEDKNMNVINKLKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKE 613 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + G ++ +S+ T ++ G+ GSKL KA LG+K+++EE+FL LL+ Sbjct: 614 MIEKRGGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEERFLELLK 664 >gi|299145622|ref|ZP_07038690.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_23] gi|298516113|gb|EFI39994.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_23] Length = 666 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 228/709 (32%), Positives = 356/709 (50%), Gaps = 51/709 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 ++++ L E+ H+ YY + P I D E+D R + A P+ D N P Sbjct: 2 DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEYK---DENSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G ++N + +V H P LSL ++ ++ F R+ + + E K D Sbjct: 59 MRVGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRVRKAL----NEDFEICCEMKYD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194 GT I++ YE GK V A RGDG G+DV+ ++ I +IP VL N P E+RGE+ + Sbjct: 115 GTSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 F LN E A +ANPRNAASG L+ N + + + G Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYLLGDNLPCDGH 234 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 YE LQ+ GF +++ R+ T + + N R LP DG+V KV+ QK Sbjct: 235 YENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKN 294 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LH Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLH 354 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER-HPDAQPFSFPSF 433 N D I+GL D+ +GD V V++ GE+IPK+ + + R + F Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFIVN 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S++VR AAH C AC Q +++HF+SR A NI+GLG + +D Sbjct: 404 CPECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDM 457 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F++ IR AD++ L + G+ S N+ I + + + ER Sbjct: 458 FYR----LGLIRNTADLYKLTADDIKG------LDRMGEKSAENIVTGIAQSKTVPFERV 507 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGIR VG +A+ +AK + + + Q D L+ + +G+ IAQ+I+ Sbjct: 508 IFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIAQSIL 557 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYV 670 ++ N N V L KE + R E+++S ++ + +V +G R + +E + Sbjct: 558 AYFANESNRELVAKL-KEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFVHHSRDEYKELI 616 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G +S KT I+ GDN G +KLEKA++LG+ I++E++FL L+ Sbjct: 617 EKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665 >gi|326574755|gb|EGE24691.1| NAD-dependent DNA ligase [Moraxella catarrhalis 101P30B1] Length = 691 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 263/711 (36%), Positives = 389/711 (54%), Gaps = 45/711 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +Q ++ +L + + H+ YY P I D EYD L+R + P+L + P+ P Sbjct: 21 DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +N +GGE+ +V H +P LSL ++N +DL F+ R D + +E K+ Sbjct: 78 INTVGGELLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAID---EYEMELKL 134 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193 DG ++++Y+ G+F A RGDG GED++ +R I +P L+ + +E+RGEV + Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLM 194 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAK 252 K F LN E IA G K +ANPRNAA+G LR+LN FF + + Sbjct: 195 PKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGIT 254 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q +Q + LGF + + A + I ++Y + RS LP++IDGLV KV++ +LQ Sbjct: 255 TQSGAMQWLGQLGFEIAP-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNLQ 313 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG +R PRW ++KF + TRL+D++ Q+GRTG LTPV RLEP+ +GG ++N T Sbjct: 314 ARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVT 373 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN I+ L + VGD V V RAG+VIPKV +I R DA+P P+ Sbjct: 374 LHNFGEIERL-----------GVMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLPT 422 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+CQS + A RCTGGL C+AQQ E L HFVSR A +I+GLG Q L Sbjct: 423 VCPVCQSPISLPEGE------ALARCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWLI 476 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 FF+ ++ ADI+ L + + + G GD SVT + +I K + +L R Sbjct: 477 KFFE----MGLVQTVADIYKLHK----QAEYLITLEGMGDKSVTKMLSAIEKSKQTTLPR 528 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LGIR VG A SLA+ + Q+ + D +L VP +G+I AQ+I Sbjct: 529 FIFALGIRGVGESTALSLAQQFGELQSIIEA----------DLQALQAVPDIGEITAQSI 578 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVT 671 +F++ NI V+AL++ + SS + + V TGTL + R +A++ + Sbjct: 579 YDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKLI 638 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA V+ +S KT ++ G+ GSKLEKAQ+LGV ++ E++FL L+ YN Sbjct: 639 ALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689 >gi|326562480|gb|EGE12798.1| NAD-dependent DNA ligase [Moraxella catarrhalis 46P47B1] gi|326567201|gb|EGE17321.1| NAD-dependent DNA ligase [Moraxella catarrhalis 12P80B1] gi|326568292|gb|EGE18374.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC8] Length = 691 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 263/711 (36%), Positives = 388/711 (54%), Gaps = 45/711 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +Q ++ +L + + H+ YY P I D EYD L+R + P+L + P+ P Sbjct: 21 DQIIAQMCALIKLLKRHNHAYYVMDAPTISDGEYDGLRRTLMMLEQQHPNLIQ---PDSP 77 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +N +GGE +V H +P LSL ++N +DL F+ R D + +E K+ Sbjct: 78 INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAID---EYEMELKL 134 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193 DG ++++Y+ G+F A RGDG GED++ +R I +P L+ + +E+RGEV + Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLM 194 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAK 252 K F LN E IA G K +ANPRNAA+G LR+LN FF + + Sbjct: 195 PKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGIT 254 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q +Q + LGF + + A + I ++Y + RS LP++IDGLV KV++ +LQ Sbjct: 255 TQSGAMQWLGQLGFEIAP-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNLQ 313 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG +R PRW ++KF + TRL+D++ Q+GRTG LTPV RLEP+ +GG ++N T Sbjct: 314 ARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVT 373 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN I+ L + VGD V V RAG+VIPKV +I R DA+P P+ Sbjct: 374 LHNFGEIERL-----------GVMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLPT 422 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+CQS + A RCTGGL C+AQQ E L HFVSR A +I+GLG Q L Sbjct: 423 VCPVCQSPISLPEGE------ALARCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWLI 476 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 FF+ ++ ADI+ L + + + G GD SVT + +I K + +L R Sbjct: 477 KFFE----MGLVQTVADIYKLHK----QAEYLITLEGMGDKSVTKMLSAIEKSKQTTLPR 528 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LGIR VG A SLA+ + Q+ + D +L VP +G+I AQ+I Sbjct: 529 FIFALGIRGVGESTALSLAQQFGELQSIIEA----------DLQALQAVPDIGEITAQSI 578 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVT 671 +F++ NI V+AL++ + SS + + V TGTL + R +A++ + Sbjct: 579 YDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKLI 638 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA V+ +S KT ++ G+ GSKLEKAQ+LGV ++ E++FL L+ YN Sbjct: 639 ALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689 >gi|38233671|ref|NP_939438.1| NAD-dependent DNA ligase LigA [Corynebacterium diphtheriae NCTC 13129] gi|81401524|sp|Q6NHQ4|DNLJ_CORDI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|38199932|emb|CAE49600.1| DNA ligase [Corynebacterium diphtheriae] Length = 677 Score = 522 bits (1344), Expect = e-145, Method: Composition-based stats. Identities = 217/713 (30%), Positives = 351/713 (49%), Gaps = 49/713 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + R++ L +++ +H D YY + P I D+E+D L R+ + P+LA P Sbjct: 4 NFADLRRQWDDLAEQVRHHRDAYYNH-TPEISDAEFDQLFRQLQQLEQEHPELAV---PE 59 Query: 73 GPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P ++G + S V H LSL+ +++ +L ++ R S + E Sbjct: 60 SPTLRVGAPVEQSSFDNVEHLERMLSLDNVFDAAELDDWLQRT---------PSATYLTE 110 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEV 187 KIDG I + Y G+ AA RGDG GEDV+A + I IP L +PE++E+ Sbjct: 111 LKIDGLSIDLVYRSGRLERAATRGDGRVGEDVTANAKVIEDIPHRLQHSDAYPVPELVEI 170 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246 RGEV+I+ DF +N++ G KP+ANPRNAA+G LR+ + R L HG+G + Sbjct: 171 RGEVFIAVEDFALVNEQRQKEGGKPFANPRNAAAGSLRQKDTEAVRKRRLKMICHGIGAS 230 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 A Q++ + + G PV+ ++ ++ + R +++DGLV K+ Sbjct: 231 EGFEADTQFDAYKALEAWGLPVSPYTKRVHSAQEVQERVTYWAQHRHDATHEMDGLVIKI 290 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D F+ Q+ LG AR+PRW I++K+ ++ +T+LLDI + +GRTG +TP A ++PV + G+ Sbjct: 291 DSFAEQRALGSTARAPRWAIAYKYPPEEVTTKLLDIQVGVGRTGRVTPFAVMDPVFVAGS 350 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATLHN+ +K + + +GD V++++AGEVIP+V+ +V +R + Sbjct: 351 TVEMATLHNQTEVKR-----------KGVLIGDTVVIRKAGEVIPEVLGPVVEKRDGSER 399 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F FP+ CP C +R+ + A RC +C AQ RL + R AF+IE L Sbjct: 400 EFIFPTLCPACGTRLA-----PQKEDDADWRCPNSQSCPAQLSSRLTYLAGRGAFDIEAL 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++ + + + A +F L T G + + L ++ + Sbjct: 455 GEKGAEDLI----ASGVLIDEAQLFNLTEDDLKRTKVYTTKAGALNATGEKLLANLESAK 510 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + L R + +L IRHVG AR+LA Y S + D + VG Sbjct: 511 HTDLWRVLVALSIRHVGPTAARALAVRYRSLEALRAA----------DVEDIANTEGVGA 560 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 IIAQ+ +++ P + VE +E +V TG+L R A Sbjct: 561 IIAQSFAQWFDVPWHRNIVEVWADAGVTMADSEADIPDQVLEGLTIVVTGSLVDFSRDSA 620 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + G S +S+KT ++VG+N GSK KA+ LG++I+NE++F LL Sbjct: 621 KEAIVSRGGKASGSVSKKTSYVVVGENAGSKETKARDLGLRILNEDEFKQLLA 673 >gi|254820448|ref|ZP_05225449.1| NAD-dependent DNA ligase LigA [Mycobacterium intracellulare ATCC 13950] Length = 693 Score = 522 bits (1344), Expect = e-145, Method: Composition-based stats. Identities = 216/711 (30%), Positives = 346/711 (48%), Gaps = 43/711 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + R++ L + + H YY PII D+E+D++ A+ P+L + + P Sbjct: 12 EVRRQWQDLAEAVREHQFRYYIKDAPIISDAEFDSMFNELLALEERHPELRVA---DSPT 68 Query: 76 NKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +GG + H LSL+ +++ ++L + R+ K+ + E KI Sbjct: 69 QLVGGAGFATDFAEAQHLERMLSLDDVFDRDELVAWSNRVENEVGKEPH----YLCELKI 124 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV----LSLNIPEIIEVRGE 190 DG +++ Y G+ AA RGDG GEDV+ R I +P P ++EVRGE Sbjct: 125 DGVALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLSAGKDFPAPSLLEVRGE 184 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V+ DF ALN ++ G+ P+ANPRN+A+G LR+ NP R L HG+G+T Sbjct: 185 VFFLLADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARRKLRMICHGIGRTEGF 244 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 K Q+E ++ G PV + + R L ++IDG+V KVD+ Sbjct: 245 APKTQHEAYAALKAWGLPVAEQTARVRGLAAVEERIGYWGEHRYDLEHEIDGVVVKVDDV 304 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG +R+PRW +++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ + Sbjct: 305 ALQRRLGTTSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVG 364 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN +K + + +GD V++++AG+VIP+V+ +V+ R + F Sbjct: 365 LATLHNAAEVKR-----------KGVLIGDTVMIRKAGDVIPEVLGPVVDLRDGSEREFV 413 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + + + A RC +C AQ ER+ H R AF+IEGLG + Sbjct: 414 MPTTCPECDTPLA-----PAKEGDADIRCPNARSCPAQLRERVFHVAGRGAFDIEGLGYE 468 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 K+E I D+FTL T G + L D+++K + ++ Sbjct: 469 AAIALLKAE----VIADEGDLFTLTEDDLLRTELFRTKAGTLSANGRRLLDNLDKAKKVA 524 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R + +L IRHVG AR+LA + L V VG IA Sbjct: 525 LWRVLVALSIRHVGPTAARALATEFGDLDAIVSA----------STERLAAVEGVGPTIA 574 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 A+ E++ + V+ + +V +E +V TG+L R A+E Sbjct: 575 AALTEWFTVDWHRAIVDKWRAAGVRMADERDTSVPRTLEGLTVVVTGSLAGFSRDDAKEA 634 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G + +S+KTD ++ GD+PGSK +KA +LGV +++E+ F LL Sbjct: 635 ILARGGKAAGSVSKKTDYVVAGDSPGSKYDKAVELGVPVLDEDGFRRLLAD 685 >gi|296113927|ref|YP_003627865.1| NAD-dependent DNA ligase [Moraxella catarrhalis RH4] gi|295921621|gb|ADG61972.1| NAD-dependent DNA ligase [Moraxella catarrhalis RH4] Length = 691 Score = 522 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 262/711 (36%), Positives = 388/711 (54%), Gaps = 45/711 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +Q ++ +L + + H+ YY P I D EYD L+R + P+L + P+ P Sbjct: 21 DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +N +GGE+ +V H +P LSL ++N +DL F+ R D + +E K+ Sbjct: 78 INTVGGELLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAID---EYEMELKL 134 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193 DG ++++Y+ G+F A RGDG GED++ +R I +P L+ + +E+RGEV + Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLM 194 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAK 252 K F LN E IA G K +ANPRNAA+G LR+LN FF + + Sbjct: 195 PKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGIT 254 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q +Q + LGF + + A + I ++Y + RS LP++IDGLV KV++ +LQ Sbjct: 255 TQSGAMQWLGQLGFEIAP-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNLQ 313 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG +R PRW ++KF + TRL+D++ Q+GRTG LTPV RLEP+ +GG ++N T Sbjct: 314 ARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVT 373 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN I+ L + VGD V V RAG+VIPKV +I R DA+P P+ Sbjct: 374 LHNFGEIERL-----------GVMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLPT 422 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+CQS + A RCTGGL C+AQQ E L HFVSR A +I+GLG Q L Sbjct: 423 VCPVCQSPISLPEGE------ALARCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWLI 476 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 FF+ ++ ADI+ L + + + G GD SV + +I K + +L R Sbjct: 477 KFFE----MGLVQTVADIYKLHK----QAEYLITLEGMGDKSVAKMLSAIEKSKQTTLPR 528 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LGIR VG A SLA+ + Q+ + D +L VP +G+I AQ+I Sbjct: 529 FIFALGIRGVGESTALSLAQQFGELQSIIEA----------DLQALQAVPDIGEITAQSI 578 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVT 671 +F++ NI V+AL++ + SS + + V TGTL + R +A++ + Sbjct: 579 YDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKLI 638 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA V+ +S KT ++ G+ GSKLEKAQ+LGV ++ E++FL L+ YN Sbjct: 639 ALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689 >gi|147669216|ref|YP_001214034.1| DNA ligase, NAD-dependent [Dehalococcoides sp. BAV1] gi|190359250|sp|A5FRL4|DNLJ_DEHSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146270164|gb|ABQ17156.1| DNA ligase, NAD-dependent [Dehalococcoides sp. BAV1] Length = 680 Score = 522 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 236/707 (33%), Positives = 372/707 (52%), Gaps = 43/707 (6%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E+ +L +EI+ H+ YY P I D++YD L RR + A P+L P+ P ++G Sbjct: 10 EVENLRREINRHNQLYYVQDNPEISDAQYDTLIRRLKELEEAHPELV---TPDSPTQRVG 66 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 E + V H P LSL ++ +L + R+ + + EPK+DG + Sbjct: 67 AEPLKAFGIVNHPYPLLSLANAFSDTELEAWYQRVKKLLG---NIPFQIDCEPKMDGLAV 123 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 + Y GKF A RGDG GE+++ +R I +IP N P + EVRGEVY+SKN F Sbjct: 124 ALTYRNGKFATGATRGDGFQGENITRNLRTIHSIPLNAEPNAPPVFEVRGEVYLSKNGFA 183 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYEM 257 LN E G +ANPRNAA+G LR+L+P+ R L+ F++ LG + + + +++ Sbjct: 184 KLNRERADKGLPLFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYSEDSLLPDSHWQI 243 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L +GF +N R NT YY +M + R++LPY+ DG+V+KVD SLQ +LG+ Sbjct: 244 LDYFSKIGFRINPLNRLVNTLEEAKEYYRQMAANRASLPYEADGVVFKVDSVSLQHRLGD 303 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 R PRW I++KF +Q TRL I I +GRTG L P A LEPVN+GG ++ A LHNED Sbjct: 304 VGREPRWAIAYKFPAEQVMTRLKKIGISVGRTGTLNPFAVLEPVNVGGVVVKQAALHNED 363 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC--- 434 I +DIR GD V+++RAGEVIP+VV ++++R+P+++PF Sbjct: 364 DI-----------LRKDIREGDTVIIQRAGEVIPEVVAPVLSKRNPESKPFRMEESLFNP 412 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 + ++ A ++C AQ +L+HFVSR A +I G+G+ Sbjct: 413 NLNRTACPVCGGEIYRPAGEAMHYCANVSCPAQFERQLEHFVSRGAMDIRGIGESLSVIL 472 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + ++ +D++ L +T + + G+ S N+ D+I + L+R I Sbjct: 473 AQQ----GLVKNVSDLYYL------TTADLLQLPRMGEKSADNIIDAIADSKTRPLDRVI 522 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F LG+RHVG E A L+++Y + A+ L +P +GD IA +IV Sbjct: 523 FGLGVRHVGNETATLLSRHYGNIWALAKTGLG----------ELQTIPDIGDKIASSIVA 572 Query: 615 FYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 ++ +N+ + L + + + N + + V TG L+ R +AQE + L Sbjct: 573 YFSEEKNVAVIRRLEEAGVRLTSDQKPVNKNMPFSGMEFVVTGKLESFSREEAQEKIRSL 632 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G +++ T+ ++VG + GSKL KA+ +GVK ++E +F+ +L+Q Sbjct: 633 GGTAKDNVTKATNYLVVGADAGSKLTKARSMGVKELSEREFINMLEQ 679 >gi|328552313|gb|AEB22805.1| NAD-dependent DNA ligase LigA [Bacillus amyloliquefaciens TA208] Length = 668 Score = 522 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 244/715 (34%), Positives = 397/715 (55%), Gaps = 53/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E A+ L + I + YY +P + DSEYD L + AI P+L P Sbjct: 1 MDKETAKHRADELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPEL---RTP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + S KV H P LSL +N +D + R ++ + + + +E Sbjct: 58 DSPTQRVGGAVLESFQKVQHGTPMLSLGNAFNDDD----LRDFDRRVRQAVGDGVAYNVE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG +GED++ ++ I IP + IEVRGE Sbjct: 114 LKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKM--KRNLSIEVRGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 ++ K F ALN+E + +P+ANPRNAA+G LR+L+P R L+ FV+ + + E+ Sbjct: 172 FMPKQSFEALNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + Q + L + LGF N +Q T ++ E+++ R+ LPY+IDG+V KVD Sbjct: 232 VETQSQGLDFLDELGFKTNQERKQCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLD 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG A+SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ Sbjct: 292 QQEELGYTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED IK +DIR+ D+V+VK+AG++IP+VV++++ +R + + F+ Sbjct: 352 ASLHNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 PTVCPECESELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ +R AD++ L + Q + G+ S NL SI K + SL Sbjct: 454 ITQLFRE----HLVRNVADLYKLTKEQVI------RLERMGEKSTDNLISSIQKSKENSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIR +G++ A++LA ++ S +N Q L+ V +G+ +A Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMHFESLENLKQATE----------EELLAVDEIGEKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 A++ +++ + + L + ++ + ++ S K +V TG L+++ R++ Sbjct: 554 AVITYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ + LG ++ +S+KTD++I G+ GSKL KAQ+L +++ +E Q L L++ Sbjct: 614 AKTQIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWDEAQLLGELKK 668 >gi|326564268|gb|EGE14498.1| NAD-dependent DNA ligase [Moraxella catarrhalis 103P14B1] Length = 691 Score = 522 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 263/711 (36%), Positives = 389/711 (54%), Gaps = 45/711 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +Q ++ +L + + H+ YY P I D EYD L+R + P+L + P+ P Sbjct: 21 DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +N +GGE+ +V H +P LSL ++N +DL F+ R D + +E K+ Sbjct: 78 INTVGGELLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAID---EYEMELKL 134 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193 DG ++++Y+ G+F A RGDG GED++ +R I +P L+ + +E+RGEV + Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLM 194 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAK 252 K F LN E IA G K +ANPRNAA+G LR+LN FF + + Sbjct: 195 PKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGIT 254 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q +Q + LGF + + A + I ++Y + RS LP++IDGLV KV++ +LQ Sbjct: 255 TQSGAMQWLGQLGFEIAP-SKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNLQ 313 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG +R PRW ++KF + TRL+D++ Q+GRTG LTPV RLEP+ +GG ++N T Sbjct: 314 ARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVT 373 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN I+ L + VGD V V RAG+VIPKV +I R DA+P P+ Sbjct: 374 LHNFGEIERL-----------GVMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLPT 422 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+CQS + A RCTGGL C+AQQ E L HFVSR A +I+GLG Q L Sbjct: 423 VCPVCQSPISLPEGE------ALARCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWLI 476 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 FF+ ++ ADI+ L + + + G GD SVT + +I K + +L R Sbjct: 477 KFFE----MGLVQTVADIYKLHK----QAEYLITLEGMGDKSVTKMLSAIEKSKQTTLPR 528 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LGIR VG A SLA+ + Q+ + D +L VP +G+I AQ+I Sbjct: 529 FIFALGIRGVGESTALSLAQQFGELQSIIEA----------DLQALQAVPDIGEITAQSI 578 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVT 671 +F++ NI V+AL++ + SS + + V TGTL + R +A++ + Sbjct: 579 YDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKLI 638 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA V+ +S KT ++ G+ GSKLEKAQ+LGV ++ E++FL L+ YN Sbjct: 639 ALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689 >gi|145295383|ref|YP_001138204.1| NAD-dependent DNA ligase LigA [Corynebacterium glutamicum R] gi|166215581|sp|A4QDK5|DNLJ_CORGB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|140845303|dbj|BAF54302.1| hypothetical protein [Corynebacterium glutamicum R] Length = 680 Score = 522 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 217/717 (30%), Positives = 351/717 (48%), Gaps = 52/717 (7%) Query: 12 LSIEQARKE--LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 ++ + A+ + L +++ YH D YY +P I D+++DAL ++ + P+LA Sbjct: 1 MTEDNAQLRRTWNDLAEKVRYHRDRYYNE-QPEIPDADFDALFKQLQQLEEDHPELAV-- 57 Query: 70 DPNGPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P +G + S V H LSL+ +++ ++LR ++ R + Sbjct: 58 -PDSPTMVVGAPVAEQSSFDNVEHLERMLSLDNVFDEQELRDWLGRT---------PAKQ 107 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PE 183 + E KIDG I + Y G+ AA RGDG GED++A R I IP L P Sbjct: 108 YLTELKIDGLSIDLVYRNGQLERAATRGDGRVGEDITANARVIEDIPHQLQGTDEYPVPA 167 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHG 242 ++E+RGEV+I+ DF +N + IA G KP+ANPRNAA+G LR+ N D R L HG Sbjct: 168 VLEIRGEVFITVEDFPEVNAQRIADGGKPFANPRNAAAGSLRQKNIEDVKKRRLRMISHG 227 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 +G T Q++ + G P + +V + R +++DGL Sbjct: 228 IGFTEGFSPASQHDAYLALAAWGLPTSPYTEAVTDPEDVVKKVSYWADHRHDALHEMDGL 287 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KVD+ + Q+ LG +R+PRW I++K+ ++ +T+LLDI + +GRTG +TP A +EPV Sbjct: 288 VIKVDDIASQRALGSTSRAPRWAIAYKYPPEEVTTKLLDIQVGVGRTGRVTPFAVMEPVL 347 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G+ ++ ATLHN+ +K + + +GD V++++AGEVIP+V+ +V R Sbjct: 348 VAGSTVSMATLHNQSEVKR-----------KGVLIGDTVVIRKAGEVIPEVLGPVVELRD 396 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 + + FP+ CP C +R+ RC +C Q RL + R AF+ Sbjct: 397 GTEREYIFPTLCPECGTRLA-----PAKADDVDWRCPNMQSCPGQLSTRLTYLAGRGAFD 451 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IE LG++ + ++ + + +F L S+ G + S L D++ Sbjct: 452 IEALGEKGAEDLIRT----GILLDESGLFDLTEDDLLSSNVYTTNAGKVNASGKKLLDNL 507 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 K + L R + +L IRHVG AR+LA Y S Q L Sbjct: 508 QKSKQTDLWRVLVALSIRHVGPTAARALAGRYHSIQALIDAP----------LEELSETD 557 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 VG IIAQ+ ++++ + V+ + +E +V TG L+ Sbjct: 558 GVGTIIAQSFKDWFEVDWHKAIVDKWAAAGVTMEEEVGEVAEQTLEGLTIVVTGGLEGFT 617 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +E + G S +S+KTD ++VG+N GSK KA++LG++I++E F+ LL Sbjct: 618 RDSVKEAIISRGGKASGSVSKKTDYVVVGENAGSKATKAEELGLRILDEAGFVRLLN 674 >gi|237717569|ref|ZP_04548050.1| DNA ligase [Bacteroides sp. 2_2_4] gi|293371586|ref|ZP_06618001.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CMC 3f] gi|229453155|gb|EEO58946.1| DNA ligase [Bacteroides sp. 2_2_4] gi|292633449|gb|EFF52017.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CMC 3f] Length = 666 Score = 522 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 227/709 (32%), Positives = 356/709 (50%), Gaps = 51/709 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 ++++ L E+ H+ YY + P I D E+D R + A P+ D N P Sbjct: 2 DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEYK---DENSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G ++N + +V H P LSL ++ ++ F R+ + + E K D Sbjct: 59 MRVGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRVRKAL----NEDFEICCEMKYD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194 GT I++ YE GK V A RGDG G+DV+ ++ I +IP VL N P E+RGE+ + Sbjct: 115 GTSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 F LN E A +ANPRNAASG L+ N + + + G Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYLLGDNLPCDGH 234 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 YE LQ+ GF +++ R+ T + + N R LP DG+V KV+ QK Sbjct: 235 YENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKN 294 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LH Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLH 354 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER-HPDAQPFSFPSF 433 N D I+GL D+ +GD V V++ GE+IPK+ + + R + F Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFIVN 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S++VR AAH C AC Q +++HF+SR A NI+GLG + +D Sbjct: 404 CPECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDM 457 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F++ I+ AD++ L + G+ S N+ I + + + ER Sbjct: 458 FYR----LGLIKNTADLYKLTADDIKG------LDRMGEKSAENIITGIAQSKTVPFERV 507 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGIR VG +A+ +AK + + + Q D L+ + +G+ IAQ+I+ Sbjct: 508 IFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIAQSIL 557 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYV 670 ++ N N V L KE + R E+++S ++ + +V +G R + +E + Sbjct: 558 AYFANESNRELVAKL-KEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFVHHSRDEYKELI 616 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G +S KT I+ GDN G +KLEKA++LG+ I++E++FL L+ Sbjct: 617 EKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665 >gi|160884627|ref|ZP_02065630.1| hypothetical protein BACOVA_02616 [Bacteroides ovatus ATCC 8483] gi|156110366|gb|EDO12111.1| hypothetical protein BACOVA_02616 [Bacteroides ovatus ATCC 8483] Length = 666 Score = 522 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 228/709 (32%), Positives = 357/709 (50%), Gaps = 51/709 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 ++++ L E+ H+ YY + P I D E+D R + A P+ D N P Sbjct: 2 DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEYK---DENSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G ++N + +V H P LSL ++ ++ F R+ + + E K D Sbjct: 59 MRVGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRVRKAL----NEDFEICCEMKYD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194 GT I++ YE GK V A RGDG G+DV+ ++ I +IP VL N P+ E+RGE+ + Sbjct: 115 GTSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPDSFEIRGEILMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 F LN E A +ANPRNAASG L+ N + + + G Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYLLGDNLPCDGH 234 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 YE LQ+ GF +++ R+ T + + N R LP DG+V KV+ QK Sbjct: 235 YENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKN 294 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LH Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLH 354 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER-HPDAQPFSFPSF 433 N D I+GL D+ +GD V V++ GE+IPK+ + + R + F Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFIVN 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S++VR AAH C AC Q +++HF+SR A NI+GLG + +D Sbjct: 404 CPECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDM 457 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F++ I+ AD++ L + G+ S NL I + + + ER Sbjct: 458 FYR----LGLIKNTADLYKLTADDIKG------LDRMGEKSAENLITGIAQSKTVPFERV 507 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGIR VG +A+ +AK + + + Q D L+ + +G+ IAQ+I+ Sbjct: 508 IFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIAQSIL 557 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYV 670 ++ N N V L KE + R E+++S ++ + +V +G R + +E + Sbjct: 558 AYFANESNRELVAKL-KEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFVHHSRDEYKELI 616 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G +S KT I+ GDN G +KLEKA++LG+ I++E++FL L+ Sbjct: 617 EKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665 >gi|308172548|ref|YP_003919253.1| DNA ligase [Bacillus amyloliquefaciens DSM 7] gi|307605412|emb|CBI41783.1| DNA ligase [Bacillus amyloliquefaciens DSM 7] gi|328910657|gb|AEB62253.1| DNA ligase [Bacillus amyloliquefaciens LL3] Length = 669 Score = 522 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 244/715 (34%), Positives = 397/715 (55%), Gaps = 53/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E A+ L + I + YY +P + DSEYD L + AI P+L P Sbjct: 2 MDKETAKHRADELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPEL---RTP 58 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + S KV H P LSL +N +D + R ++ + + + +E Sbjct: 59 DSPTQRVGGAVLESFQKVQHGTPMLSLGNAFNDDD----LRDFDRRVRQAVGDGVAYNVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG +GED++ ++ I IP + IEVRGE Sbjct: 115 LKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKM--KRNLSIEVRGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 ++ K F ALN+E + +P+ANPRNAA+G LR+L+P R L+ FV+ + + E+ Sbjct: 173 FMPKQSFEALNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + Q + L + LGF N +Q T ++ E+++ R+ LPY+IDG+V KVD Sbjct: 233 VETQSQGLDFLDELGFKTNQERKQCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLD 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG A+SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ Sbjct: 293 QQEELGYTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED IK +DIR+ D+V+VK+AG++IP+VV++++ +R + + F+ Sbjct: 353 ASLHNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTVCPECESELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ +R AD++ L + Q + G+ S NL SI K + SL Sbjct: 455 ITQLFRE----HLVRNVADLYKLTKEQVI------RLERMGEKSTDNLISSIQKSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIR +G++ A++LA ++ S +N Q L+ V +G+ +A Sbjct: 505 ERLLFGLGIRFIGSKAAKTLAMHFESLENLKQATE----------EELLAVDEIGEKMAD 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 A++ +++ + + L + ++ + ++ S K +V TG L+++ R++ Sbjct: 555 AVITYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ + LG ++ +S+KTD++I G+ GSKL KAQ+L +++ +E Q L L++ Sbjct: 615 AKTQIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWDEAQLLGELKK 669 >gi|103486042|ref|YP_615603.1| DNA ligase, NAD-dependent [Sphingopyxis alaskensis RB2256] gi|123078573|sp|Q1GVQ2|DNLJ_SPHAL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|98976119|gb|ABF52270.1| DNA ligase, NAD-dependent [Sphingopyxis alaskensis RB2256] Length = 714 Score = 522 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 272/733 (37%), Positives = 407/733 (55%), Gaps = 57/733 (7%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 + + +L+ +A EL L ++I++H+ Y+ P I D++YDAL RR AI AFP L Sbjct: 1 MKDVGSLTEAEAANELMRLAKQIAHHNKLYHAEDSPEISDADYDALVRRNTAIEEAFPHL 60 Query: 66 ARSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 R+ + P +G + L KVTH+ +SL+ + ED+ +F R+ RF + Sbjct: 61 IRA---DSPNRLVGAAVEASPLAKVTHAQRMMSLDNAFAAEDVEEFAARVRRFLNLDEGE 117 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 + FT E KIDG ++RYEKG V AA RGDG GEDV+ +R I IP+ L +IP+I Sbjct: 118 PLAFTAEDKIDGLSCSLRYEKGVLVQAATRGDGTVGEDVTPNVRTIADIPQNLKGDIPDI 177 Query: 185 IEVRGEVYISKNDFLALNDEM-----IAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238 E+RGEVY++K DF ALN + + +ANPRNAA+G LR+ + + +R L F Sbjct: 178 FEIRGEVYMAKADFAALNARLLAEADDPDKARQFANPRNAAAGSLRQKDASVTASRPLRF 237 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 HG G+ S + A QY +++ + G PV+ +++ + ++ +Y +++ R+ LPYD Sbjct: 238 LAHGWGEVSALPADTQYAVMKAIESWGVPVSPLLKRCDGVADLLDHYRMIEAERAELPYD 297 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKVD Q +LG AR+PRW I+HKF ++A T L IDIQ+GRTG LTPV RL Sbjct: 298 IDGVVYKVDRLDWQARLGFVARAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRL 357 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 PV +GG +++N TLHN D I L +R GDR++V+RAG+VIP+V + Sbjct: 358 TPVTVGGVVVSNVTLHNRDEIARL-----------GVRPGDRIIVQRAGDVIPQV--VEN 404 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 R +P+ FP CP+C S V + RCTGGL C+AQ+ ERL+HFVSR Sbjct: 405 LTRDEPREPYVFPDHCPVCGSEAVAEDGE------VDVRCTGGLICNAQKFERLRHFVSR 458 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +IEGLG++ + F + + + PADIF L+ ++ ++ G+ + SV NL Sbjct: 459 GALDIEGLGEKSIAEFLE---LGWLEKGPADIFRLKSHRE----ELLAREGWKERSVDNL 511 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD---- 594 +I +R R +F LGIRHVGA AR L K + + A + Sbjct: 512 LAAIEAKRQPDAARLLFGLGIRHVGAVTARDLLKGIGDIARLPGKAAELRAWVEANPRIE 571 Query: 595 -----------WLSLIRV-----PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638 ++ + +G +A+A+ +F+ P N + LL EVSP Sbjct: 572 GESEGKYAARRLEAIKAILDVRADGIGPAVAEALGDFFHEPHNRVLWDDLLSEVSPPPYV 631 Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698 E SE+ K +VFTG L+ + R +A+ LGA + +S KTD+++ G GSKL Sbjct: 632 VETR-DSEVSGKTVVFTGKLETMSRDEAKAQAEALGAKAAGSVSAKTDLVVAGPGAGSKL 690 Query: 699 EKAQQLGVKIMNE 711 ++A LG+++++E Sbjct: 691 KQAASLGIRVIDE 703 >gi|260662792|ref|ZP_05863686.1| DNA ligase, NAD-dependent [Lactobacillus fermentum 28-3-CHN] gi|260552873|gb|EEX25872.1| DNA ligase, NAD-dependent [Lactobacillus fermentum 28-3-CHN] Length = 679 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 243/726 (33%), Positives = 392/726 (53%), Gaps = 51/726 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M K++ + L+ +QA+ EL+ L +++ YY+ P + D YD +R I Sbjct: 1 MSKQE--AVSELTKQQAQAELTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIEQ 58 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FPDL P+ P ++GG L KVTH IP LS+ +++ +L F R Sbjct: 59 RFPDLVV---PDSPTQRVGGAAESQLNKVTHEIPMLSMGDVFSPAELADFNRRQQD--NS 113 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 + LE KIDG +++ YE G+ V + RG+G GEDV+ ++ I +IP+VL Sbjct: 114 DVKVDFDYNLELKIDGLSLSLVYENGRLVQGSTRGNGTIGEDVTENVKTIKSIPQVLPEP 173 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 + +E RGE Y+ K F+ LN+ A G+ +ANPRNAA+G LR+L+P R L+ F Sbjct: 174 LS--LEFRGECYMPKEAFVKLNERREAEGQPVFANPRNAAAGSLRQLDPKVTAARQLDTF 231 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 ++ + + Q + L+KMR LGF VN R ++ + +Y E R LPY I Sbjct: 232 MYYVPDYQALGVTTQAQALEKMRALGFAVNPNYRVVHSQAELTAYIEEYTEKRDQLPYGI 291 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KV++ + Q LG + PRW I++KF ++ +T + DI+ +GRTG +TP A ++ Sbjct: 292 DGIVEKVNDLATQVALGNTVKVPRWEIAYKFPPEEQATVVRDIEWTVGRTGNVTPTAVMD 351 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G ++ A+LHN DY+ +DIR+GD VL+ +AG++IP++ +I+ Sbjct: 352 PVQLAGTTVSRASLHNPDYL-----------AEKDIRLGDTVLLHKAGDIIPEISRVIIE 400 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R D++P+ P+ CP C + +V + A RC + C AQ E L HF SR+ Sbjct: 401 KRPADSKPYEVPTTCPECGADLVHLDDE------VALRCVNPM-CPAQIKEGLAHFASRN 453 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A NI+GLG + ++ + ++ AD++ L+ Q + + FG+ S++NL Sbjct: 454 AMNIDGLGPKIIEQLWDK----GMVKDVADLYRLEAAQLLT------LPKFGEKSISNLL 503 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I R+ S ER +F LGIRHVGA++A+ LA + S D ++ Sbjct: 504 TAIANSRHNSCERLLFGLGIRHVGAKVAQLLAAEFKSVDALMAA----------DAATIS 553 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTG 656 V +G II A+ ++QN + + L + S+E K++V TG Sbjct: 554 AVDSIGPIIGDAVATYFQNEQVHQLIAELKEVGVNMDYLAPTTSATESAEWAGKRVVLTG 613 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 L K+ R +AQE+++ GA V+ +S+KTD++I G+ GSKLEKAQ LG+++ +E++F Sbjct: 614 KLTKMTRGQAQEWLSARGASVTGSVSKKTDLLIAGEKAGSKLEKAQTLGIEVWDEDRFDQ 673 Query: 717 LLQQYN 722 +++ N Sbjct: 674 AMKEEN 679 >gi|225851368|ref|YP_002731602.1| DNA ligase, NAD-dependent [Persephonella marina EX-H1] gi|254781385|sp|C0QSF6|DNLJ_PERMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|225645574|gb|ACO03760.1| DNA ligase, NAD-dependent [Persephonella marina EX-H1] Length = 714 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 256/721 (35%), Positives = 379/721 (52%), Gaps = 56/721 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + E A + L I YHD YY + P+I D EYD L I FP+L P+ Sbjct: 27 TKEDAEAIIEDLRDVIRYHDWRYYVLANPVISDYEYDQLFHLLKDIESRFPELI---TPD 83 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++ E+ +V H P LSL+ +N EDLR+F R+ I + +EP Sbjct: 84 SPTQRVPSELTKEFPQVKHLAPMLSLDNSYNEEDLREFDRRVREAVGIDI---IEYAVEP 140 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGE 190 K DG I++ YEK FV A RGDG GED++ IR I T+P ++ IE+RGE Sbjct: 141 KFDGAGISLVYEKDMFVRGATRGDGVVGEDITPNIRVIKTVPLSAEFSVYGIDRIEIRGE 200 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSE- 248 V I+K F +N + + G P ANPRNAA+G LR +P + R L FV+ + + Sbjct: 201 VLINKEKFKEINHQRLEEGLPPLANPRNAAAGSLRLQDPKEVAKRGLEAFVYQITYAVDK 260 Query: 249 -------IFAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDID 300 + Y+ ++ + LGF ++ ++ Y E + R PY+ID Sbjct: 261 DGNNLLGNKLRYHYDSIKILYELGFKSPYKEIKVCRGIDEVIDYCREWERKRDDYPYEID 320 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V KV++ SL +LG + PRW I+ KF +QA+T+++ + Q+GRTG +TPVA+LEP Sbjct: 321 GMVIKVNDISLYDRLGVTSHHPRWAIAFKFRARQATTKIIKVVFQVGRTGAVTPVAKLEP 380 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V IGG +++ +L NED+IK +DIRVGD VL++RAG+VIP VV ++ Sbjct: 381 VEIGGVTVSSVSLINEDFIK-----------EKDIRVGDLVLIERAGDVIPYVVKVVTEA 429 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R +P FP CP C S +V+ A RC + C AQ +ER+ +F S+DA Sbjct: 430 RTGKEKPIQFPKECPSCGSPLVKPAGE------AVWRCIN-INCPAQVVERIIYFASKDA 482 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +I GLG+ + F++ +R DI+ L + + GFG SV NL Sbjct: 483 MDIRGLGEANIRKFYQ----LGFLRSIPDIYRLPYDKII------QLEGFGQKSVENLKK 532 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 +I + +N + R I LGIR VG AR+LA+ ++ L R Sbjct: 533 AIEESKNRPINRLITGLGIRFVGKVTARTLAENINCVEDLKDW----------SVEDLER 582 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 +P VG ++A +I +F+ NP NI ++ L + + E+ V + E K VFTGTL Sbjct: 583 LPDVGYVVAHSIYDFFHNPDNIKMIQELKRLGVQTCKEKEEVVENIFEGKTFVFTGTLSC 642 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R AQE V +LG S+ +SRKT ++VG+NPGSK KA LGV+I++E+QF+ +++ Sbjct: 643 CSREIAQEIVERLGGHASSSVSRKTSYVVVGENPGSKYRKALSLGVQILDEKQFIEMIKD 702 Query: 721 Y 721 + Sbjct: 703 H 703 >gi|225377122|ref|ZP_03754343.1| hypothetical protein ROSEINA2194_02767 [Roseburia inulinivorans DSM 16841] gi|225211027|gb|EEG93381.1| hypothetical protein ROSEINA2194_02767 [Roseburia inulinivorans DSM 16841] Length = 668 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 212/710 (29%), Positives = 361/710 (50%), Gaps = 47/710 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + A + ++ L++ + YH D YY P I D EYD + + + P+L P Sbjct: 1 MKKMSAEERIAELKKTLEYHIDRYYNQDSPEISDYEYDMMMQELKNLEKEHPELV---TP 57 Query: 72 NGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++GG + V H++P LSL+ +++ E++ F+ + + F + Sbjct: 58 DSPTQRVGGTAKREAGVLVRHNVPMLSLQDVFSKEEVFNFVEEMQKQLDHP-----EFVV 112 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG +++RYE G+ + A RGDG + GEDV+A + I + + L PE +E+RG Sbjct: 113 EYKIDGLSMSLRYENGELILAETRGDGINFGEDVTANAKVIKDVKQKLKDK-PEYLEIRG 171 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EVY+ F +N+ +G+K +ANPRN A+G LR+L+ R L+ F+ + + Sbjct: 172 EVYMKNAAFEKVNETQELLGKKVFANPRNCAAGTLRQLDSKVTKERDLSMFIFNIQQVRG 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E + ++ G V + + T + + R L YDIDG V K++ Sbjct: 232 MEFATHTEGYEFLKKQGIHVIDDYKVCTTAEEVWDAITAIGENRGNLAYDIDGAVVKINR 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 FS ++QLGE ++ PRW I++K+ ++ +RLL+I++ +GRTG +TP A EPV + G + Sbjct: 292 FSDREQLGETSKVPRWAIAYKYPPEEKESRLLNIELSVGRTGRITPTAVFEPVRLCGTSV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHN+D+I L DI +GD ++V ++GE+IPK+ ++ +R D + F Sbjct: 352 SRATLHNQDFIDDL-----------DIGIGDTIVVYKSGEIIPKIKEVKKEKRPSDWKRF 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP+C ++ R+ + A RCT C AQ + +FV RDA +I+G G Sbjct: 401 VIPDVCPVCGAKTEREKD------TADIRCTSP-NCPAQLERHIINFVGRDAMDIKGFGT 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 ++ + I AD+F L+ + + + + L D+I K + Sbjct: 454 VYIEELVR----LGYINNVADVFVLKTHRDELIDQGII---GKEKNTDKLLDAIEKSKEN 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + + LGI +VG A+++ KY+ + + L V +G++ Sbjct: 507 DAYKLLTGLGIPNVGKAAAKAIMKYFKDMDHLKEA----------SVEQLTEVNDIGEVS 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A I F+ + +NI ++ L + + V S + K +V TGTL + R +A E Sbjct: 557 ALCIRNFFTDEKNIEILDRLKEYGVNMQAEETETVESVLTGKTVVVTGTLPTLGRKEASE 616 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + G S +S+KTD ++ G+N GSKL KAQ+LG+ +++EEQ +L Sbjct: 617 LIEKYGGKASGSVSKKTDYVLAGENAGSKLTKAQELGIPVISEEQLKEML 666 >gi|52313150|emb|CAH55605.1| DNA ligase (NAD dependent) [Bacillus amyloliquefaciens FZB42] Length = 668 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 245/715 (34%), Positives = 397/715 (55%), Gaps = 53/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E A+ L + I + YY +P + DSEYD L + AI P+L P Sbjct: 1 MDKETAKHRAEELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPEL---RTP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + S KV H P LSL +N +D + R ++ + + + +E Sbjct: 58 DSPTQRVGGAVLESFQKVQHGTPMLSLGNAFNDDD----LRDFDRRVRQAVGDGVAYNVE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG +GED++ ++ I IP + IEVRGE Sbjct: 114 LKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKM--KRNLSIEVRGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F ALN+E + +P+ANPRNAA+G LR+L+P R L+ FV+ + + E+ Sbjct: 172 YMPKQSFEALNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + Q + L + LGF N ++ T ++ E+++ R+ LPY+IDG+V KVD Sbjct: 232 VETQSQGLDFLDELGFKTNQERKKCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLD 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG A+SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ Sbjct: 292 QQEELGYTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED IK +DIR+ D+V+VK+AG++IP+VV++++ +R + + F+ Sbjct: 352 ASLHNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 PTGCPECESELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ +R AD++ L + Q + G+ S NL SI K + SL Sbjct: 454 ITQLFRE----HLVRNVADLYKLTKEQVI------RLERMGEKSTDNLISSIQKSKENSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIR +G++ A++LA ++ S +N Q L+ V +G+ +A Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMHFESLENLKQVTE----------EELLAVDEIGEKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 A++ +++ + + L + ++ + ++ S K +V TG L+++ R++ Sbjct: 554 AVITYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ + LG ++ +S+KTD++I G+ GSKL KAQ+L +++ NE Q L L++ Sbjct: 614 AKAQIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWNEAQLLGELKK 668 >gi|260684853|ref|YP_003216138.1| DNA ligase [Clostridium difficile CD196] gi|260688511|ref|YP_003219645.1| DNA ligase [Clostridium difficile R20291] gi|260211016|emb|CBA66332.1| DNA ligase [Clostridium difficile CD196] gi|260214528|emb|CBE07046.1| DNA ligase [Clostridium difficile R20291] Length = 677 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 224/711 (31%), Positives = 374/711 (52%), Gaps = 50/711 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + E++ L + I+YH++ YY P I D EYD L + ++ P+L R Sbjct: 1 MQKVSVKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRI--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P N++GG+ ++ H P LSL ++ +DLR F R+ + + ++ + +E Sbjct: 58 DSPTNRVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG + + Y G+F A RGDG GED+S + + +IP L +N + + VRGEV Sbjct: 114 FKIDGLSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEV 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 YISK++F +N++ + +ANPRN A+G LR+L+P R L+ FV + E Sbjct: 172 YISKDNFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEEYD 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + E L+ + LGF V+ + + ++ + R L Y+IDG+V KV+ Sbjct: 232 LESHSESLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLDYEIDGMVIKVNNIK 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 + ++G A+SPRW I++KF ++ T+++DI +++GRTG +TP A LEPV + G ++ Sbjct: 292 QRDEMGYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNEDYI+ +DI++ D VLV++AG++IP+V+++I ER D F Sbjct: 352 ATLHNEDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C +R AA +C +C AQ + HFVSRDA NI+GLG+ Sbjct: 401 PEKCPVCSEPTIRLEGE------AAVKCINM-SCPAQIRRGIIHFVSRDAMNIDGLGESI 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + + I+ +D++ +++ + G+ S NL +SI K + L Sbjct: 454 ITLLLNEK----IIQDVSDLYYIKKEDVVD------LERMGEKSADNLINSIEKSKENDL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R I LGI+ +G + A+ LA + + L + G I+A Sbjct: 504 WRLINGLGIKFIGVKAAKILAYNFKDLDEVISATS----------EQLEELEEFGSIMAN 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++VEF++ +N+ + L S+ + V E K+V TGTL ++R+ A++ Sbjct: 554 SVVEFFKEDKNMNVINKLKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKD 613 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + G ++ +S+ T ++ G+ GSKL KA LG+K+++EE+FL LL+ Sbjct: 614 MIEKRGGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEERFLELLK 664 >gi|299783520|gb|ADJ41518.1| DNA ligase, NAD-dependent [Lactobacillus fermentum CECT 5716] Length = 679 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 243/726 (33%), Positives = 393/726 (54%), Gaps = 51/726 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M K++ + L+ +QA+ EL+ L +++ YY+ P + D YD +R I Sbjct: 1 MSKQE--AVSELTKQQAQAELTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIEQ 58 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FPDL P+ P ++GG L KVTH IP LS+ ++++ +L F R Sbjct: 59 RFPDLVV---PDSPTQRVGGAAESQLNKVTHEIPMLSMGDVFSLAELADFNRRQQD--NS 113 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 + LE KIDG +++ YE G+ V + RG+G GEDV+ ++ I +IP+VL Sbjct: 114 DVKVDFDYNLELKIDGLSLSLVYENGRLVQGSTRGNGTIGEDVTENVKTIKSIPQVLPEP 173 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 + +E RGE Y+ K F+ LN+ A G+ +ANPRNAA+G LR+L+P R L+ F Sbjct: 174 LS--LEFRGECYMPKEAFVKLNERREAEGQPVFANPRNAAAGSLRQLDPKVTAARQLDTF 231 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 ++ + + Q + L+KMR LGF VN R ++ + +Y E R LPY I Sbjct: 232 MYYVPDYQALGVTTQAQALEKMRALGFAVNPNYRVVHSQAELTAYIEEYTEKRDQLPYGI 291 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KV++ + Q LG + PRW I++KF ++ +T + DI+ +GRTG +TP A ++ Sbjct: 292 DGIVEKVNDLATQVALGNTVKVPRWEIAYKFPPEEQATVVRDIEWTVGRTGNVTPTAVMD 351 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G ++ A+LHN DY+ +DIR+GD VL+ +AG++IP++ +I+ Sbjct: 352 PVQLAGTTVSRASLHNPDYL-----------AEKDIRLGDTVLLHKAGDIIPEISRVIIE 400 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R D++P+ P+ CP C + +V + A RC + C AQ E L HF SR+ Sbjct: 401 KRPADSKPYEVPTTCPECGADLVHLDDE------VALRCVNPM-CPAQIKEGLAHFASRN 453 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A NI+GLG + ++ + ++ AD++ L+ Q + + FG+ S++NL Sbjct: 454 AMNIDGLGPKIIEQLWDK----GMVKDVADLYRLEAAQLLT------LPKFGEKSISNLL 503 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I R+ S ER +F LGIRHVGA++A+ LA + S D ++ Sbjct: 504 TAIANSRHNSCERLLFGLGIRHVGAKVAQLLAAEFKSVDALMAA----------DAATIS 553 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTG 656 V +G II A+ ++QN + + L + S+E K++V TG Sbjct: 554 AVDSIGPIIGDAVATYFQNEQVHQLIAELKEVGVNMDYLAPTTSATESAEWAGKRVVLTG 613 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 L K+ R +AQE+++ GA V+ +S+KTD++I G+ GSKLEKAQ LG+++ +E++F Sbjct: 614 KLTKMTRGQAQEWLSARGASVTGSVSKKTDLLIAGEKAGSKLEKAQTLGIEVWDEDRFDQ 673 Query: 717 LLQQYN 722 +++ N Sbjct: 674 AMKEEN 679 >gi|265764018|ref|ZP_06092586.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_16] gi|263256626|gb|EEZ27972.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_16] Length = 665 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 221/706 (31%), Positives = 347/706 (49%), Gaps = 48/706 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++++ L ++ H+ YY + P I D E+D L R + P+ D N P Sbjct: 3 VKEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEYK---DENSPTM 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G ++N + +V H P LSL ++ ++ F R+ + + E K DG Sbjct: 60 RVGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRVRKAL----NEDFEICCEMKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195 T I++ YE GK + A RGDG G+DV+ ++ I +IP +L N PE+ E+RGE+ + Sbjct: 116 TSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLILHGDNYPEVFEIRGEILMPW 175 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 F LN E A +ANPRNAASG L+ N + + G Y Sbjct: 176 EVFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPTDGHY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ+ GF ++ +R+ T + + N R L DG+V KV+ Q+ L Sbjct: 236 ENLQEAAKWGFKISPLMRKCQTLQEVFDFINYWDVERKNLNVATDGIVLKVNSLKQQRNL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+GL D+ +GD V V++ GE+IPK+ + + R + F + CP Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDTSARFMIGEKVKFITHCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S+++R AAH C AC Q +++HF+SR A NI+GLG + +D F+ Sbjct: 405 ECGSKLIRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + I AD++ L + GD S N+ I + + + ER IF Sbjct: 459 R----LGLIHDTADLYQLTTDDIRG------LDRMGDKSAENIIKGIMQSKEVPFERVIF 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG +A+ +AK + + D +LI + +G+ IA++I+ + Sbjct: 509 ALGIRFVGETVAKKIAKSFKDIEELENA----------DLETLINIDEIGEKIARSILNY 558 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + N N V L E ++ + +V +G R + ++ + + Sbjct: 559 FANESNRKLVGRLKTAGLQLYRPEEDLSGHTDKLAGQSIVISGVFTYHSRDEYKDLIEKH 618 Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G +S KT I+ GDN G +KLEKA +LG+KIMNEE+FL L+ Sbjct: 619 GGKNVGSISSKTSFILAGDNMGPAKLEKASKLGIKIMNEEEFLKLI 664 >gi|307293327|ref|ZP_07573173.1| DNA ligase, NAD-dependent [Sphingobium chlorophenolicum L-1] gi|306881393|gb|EFN12609.1| DNA ligase, NAD-dependent [Sphingobium chlorophenolicum L-1] Length = 711 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 279/739 (37%), Positives = 416/739 (56%), Gaps = 56/739 (7%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 + ++ +A L L +EI+ H+ Y+ +P I D+ YDAL R +A+ AFP L Sbjct: 1 MTDPTPMTEAEAANRLMRLAREIARHNRLYHDQDQPEITDAAYDALIRENNALEAAFPHL 60 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 RS + P ++G +L KV H++ +SL+ + ED+ +FI R+ RF +D Sbjct: 61 IRS---DSPNAQVGAAPTSALKKVQHAVRMMSLDNGFADEDIAEFIARVRRFLALPEDAP 117 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184 + T EPKIDG ++RYEKG+ V AA RGDG +GEDV+A +R I IP+ L+ +P++ Sbjct: 118 VALTAEPKIDGLSCSLRYEKGELVLAATRGDGTTGEDVTANVRTIADIPQRLTGQAVPDL 177 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKP-----YANPRNAASGILRRLNPT-DITRYLNF 238 EVRGEVY++K DF+ALN+ ++A P +ANPRNAA+G LR+ + +R L F Sbjct: 178 FEVRGEVYMAKADFVALNERLLAEAEDPEKARQFANPRNAAAGSLRQKDAAVTASRPLRF 237 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 HG G+ S + A+ Q ++Q + G PV++ + +T ++++Y +++ R+ LP+D Sbjct: 238 LAHGWGEVSAVPAQTQLGVMQAIAGWGLPVSDRLACVDTLEALIAHYRAIEAARAELPFD 297 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKVD Q++LG A++PRW I+HKF ++A T L IDIQ+GRTG LTPV RL Sbjct: 298 IDGVVYKVDRLDWQQRLGFVAKAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRL 357 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 PV +GG +++N TLHN D I L +R GDR++V+RAG+VIP+V + Sbjct: 358 TPVTVGGVVVSNVTLHNADEIARL-----------GVRPGDRIVVQRAGDVIPQV--VDN 404 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 R PF FP CP+CQS VR+ RCTGGL C+AQ+ ERL+HFVSR Sbjct: 405 LTRDDPRSPFIFPDHCPVCQSEAVREEGE------VDIRCTGGLICAAQRFERLRHFVSR 458 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +IEGLG++ ++ F I PADIF L+ + + G+ + SV NL Sbjct: 459 AALDIEGLGEKSIEEFLD----LGWIAEPADIFRLRTHRT----DLLGREGWKEKSVDNL 510 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN------ 592 +I +R R +F LGIRH+GA AR L K Y + IIA + Sbjct: 511 LAAIEAKRQPDAARLLFGLGIRHIGAVTARDLLKRYTTLPAIHGLAKEIIALRDAAAPAE 570 Query: 593 ------------DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 I V VG + A+ +F+ P N+ LL EVSP E Sbjct: 571 GEEESRFRNRLDKAIAEQIGVENVGSAVGHALADFFHEPHNVEVWNDLLSEVSPPDYVVE 630 Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700 +S + K +VFTG L+ + R +A+ +LGA + +S KTD+++ G GSKL++ Sbjct: 631 -TTASAVTGKTVVFTGKLETMSRDEAKAQAERLGAKAAGSVSAKTDLLVAGPGAGSKLKQ 689 Query: 701 AQQLGVKIMNEEQFLFLLQ 719 A LG+++++E + +++ Sbjct: 690 AAALGIEVIDEAAWAEIVK 708 >gi|255657267|ref|ZP_05402676.1| DNA ligase [Clostridium difficile QCD-23m63] Length = 674 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 222/707 (31%), Positives = 374/707 (52%), Gaps = 50/707 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + E++ L + I+YH++ YY P I D EYD L + ++ P+L R + P Sbjct: 2 SIKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRI---DSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 N++GG+ ++ H P LSL ++ +DLR F R+ + + ++ + +E KID Sbjct: 59 NRVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVEFKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y G+F A RGDG GED+S + + +IP L +N + + VRGEVYISK Sbjct: 115 GLSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 ++F +N++ + +ANPRN A+G LR+L+P R L+ FV + + + Sbjct: 173 DNFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEDYDLESH 232 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 + L+ + LGF V+ + + ++ + R L Y+IDG+V KV+ + + Sbjct: 233 SDSLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLEYEIDGMVIKVNNIKQRDE 292 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 +G A+SPRW I++KF ++ T+++DI +++GRTG +TP A LEPV + G ++ ATLH Sbjct: 293 MGYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLH 352 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NEDYI+ +DI++ D VLV++AG++IP+V+++I ER D F P C Sbjct: 353 NEDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKC 401 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C +R AA +C +C AQ + HFVSRDA NI+GLG+ + Sbjct: 402 PVCSEPTIRLEGE------AAVKCINM-SCPAQIRRGIIHFVSRDAMNIDGLGESIITLL 454 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + I+ +D++ +++ + G+ S NL +SI K + L R I Sbjct: 455 LNEK----IIQDVSDLYYIKKEDVV------ELERMGEKSADNLINSIEKSKENDLWRLI 504 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 LGI+ +G + A+ LA + + + L + G I+A ++VE Sbjct: 505 NGLGIKFIGVKAAKILAYNFKDLDDVMSATS----------EQLEELEEFGSIMANSVVE 554 Query: 615 FYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F++ +N+ + L S+ + V E K+V TGTL ++R+ A++ + + Sbjct: 555 FFKEDKNMNVINKLKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKDMIEK 614 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G ++ +S+ T ++ G+ GSKL KA LG+K+++EE+FL LL+ Sbjct: 615 RGGKATSSVSKSTTFVLAGEEAGSKLAKANDLGIKVIDEERFLELLK 661 >gi|189465636|ref|ZP_03014421.1| hypothetical protein BACINT_01996 [Bacteroides intestinalis DSM 17393] gi|189437910|gb|EDV06895.1| hypothetical protein BACINT_01996 [Bacteroides intestinalis DSM 17393] Length = 665 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 227/707 (32%), Positives = 362/707 (51%), Gaps = 50/707 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A++++ L E+ H+ YY + P I D E+D + R + P+ +D P Sbjct: 3 AKEKIDQLRAELHRHNYNYYVLNAPEISDKEFDDMMRELQEMEREHPEY---QDETSPTM 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G ++N + +VTH P LSL ++ ++ F R + + E K DG Sbjct: 60 RVGSDLNKNFTQVTHKYPMLSLGNTYSEGEVSDFYDRTQKAL----NEDFEICAELKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 T I++ YE GK + A RGDG G+DV+ ++ I TIP VL + P++ E+RGE+ + Sbjct: 116 TSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGDYPQLFEIRGEILMPWK 175 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN E A +ANPRNAASG L+ N + E+ G YE Sbjct: 176 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGEELPCDGHYE 235 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 LQK GF +++ +++ ++ + Y + + R LP DG+V KV+ QK LG Sbjct: 236 NLQKAAQWGFKISDHMKKCHSLQEVFDYIHYWDTERKNLPVATDGIVLKVNSLKQQKNLG 295 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 FTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHNA 355 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFCP 435 D I+GL D+ VGD V V++ GE+IPK+ + + R + F + CP Sbjct: 356 DIIEGL-----------DLHVGDMVYVEKGGEIIPKITGVDKDARSMMVGEKVKFITHCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S+++R AAH C AC Q +++HF+SR A NI+GLG + +D F+ Sbjct: 405 ECGSKLIRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + I+ D++ L + + GD S N+ I + R + ER +F Sbjct: 459 R----LGLIKDTTDLYKLTVDDIKN------LDRMGDKSAENIVKGIAQSREVPFERALF 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG +A+ +AK + + D LI + +G+ IAQ+I+ + Sbjct: 509 ALGIRFVGETVAKKIAKSFTDIEELENA----------DLERLINIDEIGEKIAQSIISY 558 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + NP N +E L K R E+++S ++ + +V +G R + ++ + + Sbjct: 559 FANPLNRELIERL-KIAGLQFSRKEEDLSGYTDKLVGQSIVISGVFTHHSRDEYKDLIEK 617 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G +S KT I+ G+N G +KLEKAQ+LGV+IM+E++FL L+ Sbjct: 618 NGGKNVGSISAKTSFILAGENMGPAKLEKAQKLGVQIMSEDEFLALI 664 >gi|184155951|ref|YP_001844291.1| NAD-dependent DNA ligase [Lactobacillus fermentum IFO 3956] gi|254781353|sp|B2GDS9|DNLJ_LACF3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|183227295|dbj|BAG27811.1| NAD-dependent DNA ligase [Lactobacillus fermentum IFO 3956] Length = 679 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 243/726 (33%), Positives = 393/726 (54%), Gaps = 51/726 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M K++ + L+ +QA+ EL+ L +++ YY+ P + D YD +R I Sbjct: 1 MSKQE--AVSELTKQQAQAELTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIEQ 58 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FPDL P+ P ++GG L KVTH IP LS+ ++++ +L F R Sbjct: 59 RFPDLVV---PDSPTQRVGGAAESQLNKVTHEIPMLSMGDVFSLAELADFNRRQQD--NS 113 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 + LE KIDG +++ YE G+ V + RG+G GEDV+ ++ I +IP+VL Sbjct: 114 DVKVDFDYNLELKIDGLSLSLVYENGRLVQGSTRGNGTIGEDVTENVKTIKSIPQVLPEP 173 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 + +E RGE Y+ K F+ LN+ A G+ +ANPRNAA+G LR+L+P R L+ F Sbjct: 174 LS--LEFRGECYMPKEAFVKLNERREAEGQPVFANPRNAAAGSLRQLDPKVTAARQLDTF 231 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 ++ + + Q + L+KMR LGF VN R ++ + +Y E R LPY I Sbjct: 232 MYYVPDYQALGVTTQAQALEKMRALGFAVNPNYRVVHSQAELTAYIEEYTKKRDQLPYGI 291 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KV++ + Q LG + PRW I++KF ++ +T + DI+ +GRTG +TP A ++ Sbjct: 292 DGIVEKVNDLATQVALGNTVKVPRWEIAYKFPPEEQATVVRDIEWTVGRTGNVTPTAVMD 351 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G ++ A+LHN DY+ +DIR+GD VL+ +AG++IP++ +I+ Sbjct: 352 PVQLAGTTVSRASLHNPDYL-----------VEKDIRLGDTVLLHKAGDIIPEISRVIIE 400 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R D++P+ P+ CP C + +V + A RC + C AQ E L HF SR+ Sbjct: 401 KRPADSKPYEVPTTCPECGADLVHLDDE------VALRCVNPM-CPAQIKEGLAHFASRN 453 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A NI+GLG + ++ + ++ AD++ L+ Q + + FG+ S++NL Sbjct: 454 AMNIDGLGPKIIEQLWDK----GMVKDVADLYRLEAAQLLT------LPKFGEKSISNLL 503 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I R+ S ER +F LGIRHVGA++A+ LA + S D ++ Sbjct: 504 TAIANSRHNSCERLLFGLGIRHVGAKVAQLLAAEFKSVDALMAA----------DAATIS 553 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTG 656 V +G II A+ ++QN + + L + S+E K++V TG Sbjct: 554 AVDSIGPIIGDAVATYFQNEQVHQLIAELKEVGVNMDYLAPTTSATESAEWAGKRVVLTG 613 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 L K+ R +AQE+++ GA V+ +S+KTD++I G+ GSKLEKAQ LG+++ +E++F Sbjct: 614 KLTKMTRGQAQEWLSARGASVTGSVSKKTDLLIAGEKAGSKLEKAQTLGIEVWDEDRFDQ 673 Query: 717 LLQQYN 722 +++ N Sbjct: 674 AMKEEN 679 >gi|154685157|ref|YP_001420318.1| NAD-dependent DNA ligase LigA [Bacillus amyloliquefaciens FZB42] gi|166215394|sp|A7Z261|DNLJ_BACA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|154351008|gb|ABS73087.1| LigA [Bacillus amyloliquefaciens FZB42] Length = 669 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 245/715 (34%), Positives = 397/715 (55%), Gaps = 53/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E A+ L + I + YY +P + DSEYD L + AI P+L P Sbjct: 2 MDKETAKHRAEELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPEL---RTP 58 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + S KV H P LSL +N +D + R ++ + + + +E Sbjct: 59 DSPTQRVGGAVLESFQKVQHGTPMLSLGNAFNDDD----LRDFDRRVRQAVGDGVAYNVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG +GED++ ++ I IP + IEVRGE Sbjct: 115 LKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKM--KRNLSIEVRGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ K F ALN+E + +P+ANPRNAA+G LR+L+P R L+ FV+ + + E+ Sbjct: 173 YMPKQSFEALNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + Q + L + LGF N ++ T ++ E+++ R+ LPY+IDG+V KVD Sbjct: 233 VETQSQGLDFLDELGFKTNQERKKCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLD 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG A+SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ Sbjct: 293 QQEELGYTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED IK +DIR+ D+V+VK+AG++IP+VV++++ +R + + F+ Sbjct: 353 ASLHNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTGCPECESELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ +R AD++ L + Q + G+ S NL SI K + SL Sbjct: 455 ITQLFRE----HLVRNVADLYKLTKEQVI------RLERMGEKSTDNLISSIQKSKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIR +G++ A++LA ++ S +N Q L+ V +G+ +A Sbjct: 505 ERLLFGLGIRFIGSKAAKTLAMHFESLENLKQVTE----------EELLAVDEIGEKMAD 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 A++ +++ + + L + ++ + ++ S K +V TG L+++ R++ Sbjct: 555 AVITYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ + LG ++ +S+KTD++I G+ GSKL KAQ+L +++ NE Q L L++ Sbjct: 615 AKAQIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWNEAQLLGELKK 669 >gi|298492390|ref|YP_003722567.1| DNA ligase, NAD-dependent ['Nostoc azollae' 0708] gi|298234308|gb|ADI65444.1| DNA ligase, NAD-dependent ['Nostoc azollae' 0708] Length = 684 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 225/723 (31%), Positives = 366/723 (50%), Gaps = 55/723 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + ++ E + + L + YY P++ D YD L R + +P L Sbjct: 1 MMQMTSE--AQLVRELRLLLQQASYAYYVLDAPVMEDMVYDRLYRELQELETQYPYLV-- 56 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-SIF 127 P+ P ++G V H+IP SLE +N+E+L+ + R R + + Sbjct: 57 -TPDSPTQRVGERPATHFTSVRHNIPLYSLENAFNVEELQGWDQRWRRHLMAQYYPVEVD 115 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEI 184 + E KIDG + + Y+ G V A RGDG GED++ +R I +IP L+ + E Sbjct: 116 YVAELKIDGAALALTYQNGILVRGATRGDGVMGEDITQNVRTIRSIPLRLNFDGLENIEK 175 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL 243 +EVRGEV++ F +N++ G + +ANPRNA +G LR+L+ R L+FF + + Sbjct: 176 VEVRGEVFLPLEVFKQINEKRQKAGEQLFANPRNAVAGTLRQLDSRIVAQRQLDFFAYTV 235 Query: 244 ---GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 G A Q+E L+ ++ LGF V+ R ++ + YY + R PY D Sbjct: 236 HIPGMDDASIANTQWEALELLQRLGFRVDTNHRLCHSIREVAEYYEYWDTERLNSPYMTD 295 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V K++ F LQ+QLG + PRW I+ K+A +QA TR+ +I I +GRTG LTP+A + P Sbjct: 296 GVVVKLNTFKLQEQLGFTQKFPRWAIALKYAAEQAPTRVNNITINVGRTGALTPLAEMRP 355 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V + G ++ ATLHN D I+ L DIR+GD V+V++AG++IP+VV +I Sbjct: 356 VQLAGTTVSRATLHNSDRIQQL-----------DIRIGDTVIVRKAGDIIPEVVRVIKEL 404 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R D PF PS CPIC VVR+ A RC +C+A ++H+VSRDA Sbjct: 405 RPSDTAPFIMPSHCPICGQPVVRESGE------AVTRCVSA-SCAAILKGEIEHWVSRDA 457 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +I+G+G++ + E + +D++ L + + + + G S L + Sbjct: 458 LDIKGMGEKLVHQLVDKE----LVLSVSDLYKLIKEELCA------LERMGQKSAQKLVN 507 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 +I + +N R ++ LGIRHVG+ A+ L + + + + A + + Sbjct: 508 AIAQSKNQPWSRVLYGLGIRHVGSVNAQLLTEKFTTVEQLAAAKQS----------DIEG 557 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN----VSSEIENKKLVFTG 656 V +G IAQ++ ++++ P N + L E ++ + K V TG Sbjct: 558 VYGIGAEIAQSVYQWFRTPANQTLISRLQDIGLQLANTAETKPVGEINPNLAGKIFVVTG 617 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL ++R +A+ + + G V+ +SRKTD ++VG + G K++KAQ LG+ + E Q L Sbjct: 618 TLPTLKRDEAKVLIQKAGGKVTDSVSRKTDFLVVGADAGFKVKKAQSLGITQLTETQLLK 677 Query: 717 LLQ 719 +L+ Sbjct: 678 MLE 680 >gi|237713195|ref|ZP_04543676.1| DNA ligase [Bacteroides sp. D1] gi|262406666|ref|ZP_06083215.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_22] gi|294643460|ref|ZP_06721274.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CC 2a] gi|294808131|ref|ZP_06766900.1| DNA ligase (NAD(+)) [Bacteroides xylanisolvens SD CC 1b] gi|229446662|gb|EEO52453.1| DNA ligase [Bacteroides sp. D1] gi|262355369|gb|EEZ04460.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_22] gi|292641208|gb|EFF59412.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CC 2a] gi|294444674|gb|EFG13372.1| DNA ligase (NAD(+)) [Bacteroides xylanisolvens SD CC 1b] Length = 666 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 226/709 (31%), Positives = 354/709 (49%), Gaps = 51/709 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 ++++ L E+ H+ YY + P I D E+D R + A P+ D N P Sbjct: 2 DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEYK---DENSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G ++N + +V H P LSL ++ ++ F R+ + + E K D Sbjct: 59 MRVGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRVRKAL----NEDFEICCEMKYD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194 GT I++ YE GK V A RGDG G+DV+ ++ I +IP VL N P E+RGE+ + Sbjct: 115 GTSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 F LN E A +ANPRNAASG L+ N + + + G Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYLLGDNLPCDGH 234 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 YE LQ+ GF +++ R+ T + + N R LP DG+V KV+ QK Sbjct: 235 YENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKN 294 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW I++KF ++A T L + Q+GRTG +TPVA L+PV + G ++ A+LH Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTCLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLH 354 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER-HPDAQPFSFPSF 433 N D I+GL D+ +GD V V++ GE+IPK+ + + R + F Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFIVN 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S++VR AAH C AC Q +++HF+SR A NI+GLG + +D Sbjct: 404 CPECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDM 457 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F++ I AD++ L + G+ S N+ I + + + ER Sbjct: 458 FYR----LGLIENTADLYKLTVDDIKG------LDRMGEKSAENIVTGIAQSKTVPFERV 507 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGIR VG +A+ +AK + + + Q D L+ + +G+ IAQ+I+ Sbjct: 508 IFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIAQSIL 557 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYV 670 ++ N N V L KE + R E+++S ++ + +V +G R + +E + Sbjct: 558 AYFANESNRELVNRL-KEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFIHHSRDEYKELI 616 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G +S KT I+ GDN G +KLEKA++LG+ I++E++FL L+ Sbjct: 617 EKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665 >gi|300858287|ref|YP_003783270.1| DNA ligase [Corynebacterium pseudotuberculosis FRC41] gi|300685741|gb|ADK28663.1| DNA ligase [Corynebacterium pseudotuberculosis FRC41] gi|302206007|gb|ADL10349.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudotuberculosis C231] gi|302330560|gb|ADL20754.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudotuberculosis 1002] gi|308276242|gb|ADO26141.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudotuberculosis I19] Length = 694 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 215/711 (30%), Positives = 348/711 (48%), Gaps = 50/711 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + R++ L +++ YH D YY P I D ++DAL R + P+LA P+ P Sbjct: 23 ELRRQWDELAEQVRYHRDAYYN-DTPEISDQDFDALFRTLQKLEEEHPELAV---PDSPT 78 Query: 76 NKIGGEM--NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + + S V H +SL+ +++ +L +++ R + + E K Sbjct: 79 LEVGAPVALSSSFNNVEHLERLMSLDNVFDAAELSEWLQRT---------PAQAYLTELK 129 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRG 189 IDG + + Y GK AA RGDG GEDV+ + I +P L IPE++EVRG Sbjct: 130 IDGLSLDLIYRDGKLWRAATRGDGRIGEDVTENAKVIADVPHRLKENAEFPIPELLEVRG 189 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE 248 EV+I+ DF A+N++ G KP+ANPRNAA+G LR+ + R L HGLG T Sbjct: 190 EVFIAVEDFAAVNEQRQLEGGKPFANPRNAAAGSLRQKDVEAVKKRRLRMICHGLGATQG 249 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 QY + + G PV+ + + R +++DG+V KVD Sbjct: 250 FTPASQYHAYEALAAWGLPVSPYTELVQSAAEVQEKVLYWAEHRHDAAHEMDGVVVKVDS 309 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 S Q+ LG AR+PRW I++K+ ++ +T LLDI + +GRTG +TP A + PV + G+ + Sbjct: 310 ISEQRALGATARAPRWAIAYKYPPEEVTTELLDIQVGVGRTGRVTPFAVMRPVFVAGSTV 369 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHN+ +K + + +GD V++++AGEVIP+V+ +V +R + F Sbjct: 370 SMATLHNQTEVKR-----------KGVLIGDTVVIRKAGEVIPEVLGPVVEKRDGTEREF 418 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CP C +R+ + A RC +C AQ RL + R AF+IE LG+ Sbjct: 419 IFPTLCPSCGTRLA-----PQKEDDADWRCPNSQSCPAQLSTRLTYLAGRGAFDIEALGE 473 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + ++ + A +F L T + + + L ++ + + Sbjct: 474 KAAEDLIRT----GVLIDEAGLFELTEEDLLKTRVYTTKKKTLNATGSKLLANLEQSKKA 529 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L R + +L IRHVG AR+LA Y S + + VG II Sbjct: 530 DLWRVLVALSIRHVGPTAARALASRYHSMDALREA----------SAEEIADTEGVGAII 579 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 AQ+ ++++ + VE + + + +V TG+L+ R A+E Sbjct: 580 AQSFKDWFEVDWHAHIVEQWARAGVTMAEETSQLPEQTLAGMTVVVTGSLEGFSRDSAKE 639 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + G S +S+KTD ++VG+N GSK KA++LG+ I++E F+ LL+ Sbjct: 640 AIISRGGKASTSVSKKTDYVVVGENAGSKETKARELGLTILDESGFIRLLE 690 >gi|94497003|ref|ZP_01303577.1| DNA ligase, NAD-dependent [Sphingomonas sp. SKA58] gi|94423679|gb|EAT08706.1| DNA ligase, NAD-dependent [Sphingomonas sp. SKA58] Length = 703 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 278/731 (38%), Positives = 415/731 (56%), Gaps = 48/731 (6%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 + L+ +A L L +E++ H+ Y+ P I D++YDAL R +A+ AFP L Sbjct: 1 MTDPAMLTEAEAANRLMRLAKEVAKHNRLYHDQDAPEISDADYDALIRENNALEAAFPHL 60 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R+ + P ++G +L KV H++ +SL+ ++ ED+ F+ RI RF DD Sbjct: 61 IRA---DSPNAQVGAASTTALKKVPHAVRMMSLDNGFSDEDIADFLARIRRFLALPDDAP 117 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184 + T EPKIDG ++RYEKG+ V AA RGDG +GEDV+A + I IP+ L+ IP++ Sbjct: 118 VALTAEPKIDGLSCSLRYEKGELVLAATRGDGTTGEDVTANVHTIADIPQRLTGEAIPDL 177 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKP-----YANPRNAASGILRRLNPT-DITRYLNF 238 E+RGEVY++K DF+ALN ++A P +ANPRNAA+G LR+ + T +R L F Sbjct: 178 FEIRGEVYMAKGDFVALNARLLAEAENPEKARQFANPRNAAAGSLRQKDATVTASRPLRF 237 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 HG G S + A Q ++Q + G PV++ + ++ ++++Y +++ R+ LP+D Sbjct: 238 LAHGWGAHSALPADTQLGVMQAIAGWGLPVSDMLACVDSLDALIAHYRTIEAGRADLPFD 297 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKVD Q++LG A++PRW I+HKF ++A T L IDIQ+GRTG LTPV RL Sbjct: 298 IDGVVYKVDRLDWQQRLGFVAKAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRL 357 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 PV +GG +++N TLHN D I L +R GDR++V+RAG+VIP+V + Sbjct: 358 TPVTVGGVVVSNVTLHNADEIARL-----------GVRPGDRIIVQRAGDVIPQV--VDN 404 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 R +PF FP+ CP+C S VR+ RCTGGL C AQ+ ERL+HFVSR Sbjct: 405 LTRDEAREPFPFPTHCPVCGSEAVREEGE------VDVRCTGGLICPAQRFERLRHFVSR 458 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +IEGLG++ + F I PADIF L++ + + G+ + SV NL Sbjct: 459 AALDIEGLGEKTIQEFLD----LGWIAEPADIFRLKKHRA----DLLGREGWKEKSVDNL 510 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN------- 591 +I +R R +F LGIRHVGA AR L K Y + +I+A Sbjct: 511 LMAIEAKRQPDAARLLFGLGIRHVGAVTARDLLKRYATLPAIRALAQDIMALRDQPHDSQ 570 Query: 592 ---NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648 + I V VG + A+ F+ P N+ A + LL EVSP E V S + Sbjct: 571 AKMDKAIAEHIGVDNVGVAVGHALAHFFHEPHNVEAWDDLLSEVSPPPYVVETTV-SAVT 629 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +VFTG L+ + R +A+ ++GA + +S KTD+++ G GSKL++A LG+++ Sbjct: 630 GKTVVFTGKLETMSRDEAKAQAERMGAKAAGSVSAKTDLVVAGPGAGSKLKQATVLGIEV 689 Query: 709 MNEEQFLFLLQ 719 + E+ + +++ Sbjct: 690 ITEQAWADIVK 700 >gi|294631529|ref|ZP_06710089.1| DNA ligase, NAD-dependent [Streptomyces sp. e14] gi|292834862|gb|EFF93211.1| DNA ligase, NAD-dependent [Streptomyces sp. e14] Length = 732 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 224/737 (30%), Positives = 348/737 (47%), Gaps = 62/737 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +AR+E + L +++ H YY P+I D+++D L R +A+ +P+L P+ Sbjct: 2 PAEAREEHARLAEQVEEHRFRYYVKDAPVISDADFDRLLRSLEALEERYPEL---RTPDS 58 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+ G V H LSL+ +N EDL ++ RI R + F E K Sbjct: 59 PTQKVAGSYETEFTAVEHRERMLSLDNTFNDEDLAAWVDRIARELGE---QEYHFLCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG + + YE G+ AA RGDG +GED++ +R I IP L+ + P+++E+RGEVY Sbjct: 116 VDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLNGDKVPDLVEIRGEVY 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 F LN ++A G KP+ANPRNAA+G LR+ +P TR L+ VHG+G Sbjct: 176 FPMAGFEELNARLVAAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGALEGYEG 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E + G P + R + GI + R ++ ++IDG+V K+DE Sbjct: 236 LTRLSEAYDLLSTWGLPTSPHNRVVDGLDGIRDFIAYYGEHRHSVEHEIDGVVVKLDEIR 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG AR+PRW I++K+A ++ +T+LL+I + +GRTG +TP A++EPV + G+ + Sbjct: 296 LQGRLGSTARAPRWAIAYKYAPEEVNTKLLNIRVGVGRTGRVTPYAQVEPVTVAGSEVEF 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN+D +K + + +GD V++++AG+VIP+++ + + R + F Sbjct: 356 ATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVM 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C + + + RC C AQ ERL + R A +IE G Sbjct: 405 PGECPECGTPLRPM-----KEGDVDLRCPNARTCPAQLRERLFYLAGRKALDIEHFGYVA 459 Query: 491 LDFFFKSEDPA-FSIRIPADIFTLQRRQQTSTTKI------------------------E 525 K +PA +R D+F L Q Sbjct: 460 AAALTKPLEPAEPPLRDEGDLFDLTVEQLLPIKAYVLDQDSGLPKRDPKTGEEKIATVFA 519 Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 N G + + ++I + L R + L IRHVG A +LA+ + S Q Sbjct: 520 NQQGEPKKNALAMLENIAAAKQRPLARVLTGLSIRHVGPVAAEALAREFRSIDRIEQASE 579 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS- 644 L VG IIA ++ E++ + + Sbjct: 580 ----------EELANTEGVGQIIAASLKEWFAEEWHQEIIRKWRAAGVRMEEEGPGEDEG 629 Query: 645 -SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 +E +V TGTL+ R A+ + GA V+ +S+KT ++VGDNPGSK +KA Q Sbjct: 630 PRPLEGLTVVVTGTLEHFTRDGAKAALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQ 689 Query: 704 LGVKIMNEEQFLFLLQQ 720 L V +++E F LL Q Sbjct: 690 LKVPVLDETGFGVLLDQ 706 >gi|182411830|ref|YP_001816896.1| DNA ligase, NAD-dependent [Opitutus terrae PB90-1] gi|254778148|sp|B1ZWH2|DNLJ1_OPITP RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 1 gi|177839044|gb|ACB73296.1| DNA ligase, NAD-dependent [Opitutus terrae PB90-1] Length = 675 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 224/714 (31%), Positives = 361/714 (50%), Gaps = 49/714 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ +A+ ++ L +++ HD+ Y++ ++P I D EYDALKR + A+P AR Sbjct: 1 MTPVEAQSRIAELRAQVARHDELYHRRAQPQIGDFEYDALKRELAELEAAWPQFARGA-- 58 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P ++G + H +SL+ ++ +LR+F R+ R ++ + F +E Sbjct: 59 -SPTEQVGDDRTEGFQVYRHRERMMSLDNTYSETELREFHDRLVRELERDG---LKFVIE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEV 187 PKIDG ++I YEKGK V A RG+G G+D++ I ++PR L P +IE+ Sbjct: 115 PKIDGLAVSITYEKGKLVRAVTRGNGIEGDDITTNALTIKSLPRELKRADGVPLPAVIEI 174 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT 246 RGEV+++ +FL +N + G YANPRN A+G +++L+P + R L ++G G Sbjct: 175 RGEVFLTTEEFLRINRQREEAGEPLYANPRNLAAGTIKQLDPREVAQRKLEVVLYGRGYV 234 Query: 247 SEIF--AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + Q + ++ G P A I + E+ ++R T Y DG V Sbjct: 235 EPASALPETQAQFHGWVKAWGLPTVERFWTATGADEIWAAVQELDALRDTFAYATDGAVV 294 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 K+D LQ++ G ++SPRW +++KFA +A T+L I +Q+GRTG+LTPVA L+PV + Sbjct: 295 KLDAVPLQRRAGSTSKSPRWAMAYKFAPDRAETQLRAITVQVGRTGVLTPVAELDPVQLA 354 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ ATLHN D I +DIRVGD V V++AGE+IP V+ + R P+ Sbjct: 355 GTTVSRATLHNRDEIAR-----------KDIRVGDFVYVEKAGEIIPAVIGVNPARRAPE 403 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P+ FP CP C + VV+ + +C Q R++HF S+ +IE Sbjct: 404 CVPYVFPEKCPECGTAVVQLEGEVAVR-------CPNFSCPVQVRRRVQHFASKACVDIE 456 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+G+ +D + + DI+ L+R + K + S L ++I Sbjct: 457 GMGEAMVDVLVEK----GWVHSVPDIYQLKRENLLTLGKS------VEKSTDKLLEAIEA 506 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + L RFI LGI H GA A+ LA+ + + A + + Sbjct: 507 SKRAELWRFIHGLGIPHAGAAAAKDLARTFGGLERLASARYEDFIREKASV-----IGGI 561 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G+ +A AI+ ++ PRN V+ L++ + N S + K V TGTL + R Sbjct: 562 GETMALAILAYFAEPRNRAVVDELVRVGVQPVVP---NSGSALAGKTFVLTGTLPTLTRD 618 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A + G VS+ +S+KT ++ G+ GSKLEKA+ L V +++E +FL LL Sbjct: 619 EATAQIEAAGGKVSSGVSKKTSYVLAGEEAGSKLEKARALAVPVIDEAEFLRLL 672 >gi|291299865|ref|YP_003511143.1| DNA ligase NAD-dependent [Stackebrandtia nassauensis DSM 44728] gi|290569085|gb|ADD42050.1| DNA ligase, NAD-dependent [Stackebrandtia nassauensis DSM 44728] Length = 749 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 224/769 (29%), Positives = 352/769 (45%), Gaps = 84/769 (10%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + AR+ + L EI H Y++ P I D+EYDAL R AI A P LA + Sbjct: 14 DFDAARERHTKLAAEIDRHRQLYHRDDAPQISDAEYDALMRELLAIEEAHPVLATQ---D 70 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GG+++ V H+ SL+ ++ E+L ++ R+ + + E Sbjct: 71 SPSQQVGGDVSELFASVRHAERLYSLDNAFSPEELTAWVERVT-----AEVPGEAYLCEL 125 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVR 188 KIDG + + YE G V A RGDG +GED++ +R I +IP L +PE +E+R Sbjct: 126 KIDGLAVNLTYENGVLVRGATRGDGTTGEDITPNVRTIASIPEKLKGTKKYPVPEFVEIR 185 Query: 189 GEVYISKNDFLALNDEMIAVGRKP--------------------YANPRNAASGILRRLN 228 GEV++S F LN + +A + YANPRNAA+G LR+ + Sbjct: 186 GEVFMSTESFEKLNADRLAENERITAANEERKAEGKRLQKLLPLYANPRNAAAGSLRQKD 245 Query: 229 PT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE 287 PT +R L+ V+G G Q + ++ G P ++ + +T G+ Y Sbjct: 246 PTITASRALSMTVYGFGARRGFEPTHQSQGYAALKAWGLPTSSYFKVLDTVEGVTEYIEH 305 Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347 R + ++IDG+V K+D+ ++Q++LG R+PRW I++K+ ++ +T L DI + +G Sbjct: 306 YGEHRHDIEHEIDGVVIKIDDIAVQRRLGSTTRAPRWAIAYKYPPEEVTTTLRDIKVSVG 365 Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407 RTG TP A LEPV + G+ + ATLHN+D +K + + +GDRV++++AG Sbjct: 366 RTGRATPYAVLEPVRVAGSEVEFATLHNQDIVK-----------AKGVLIGDRVIIRKAG 414 Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467 +VIP+V+ + R D F PS CP C + + + + RC +C AQ Sbjct: 415 DVIPEVLGPVEGARTGDEHEFVMPSNCPECGTELRQM-----SEGDIDLRCPNARSCPAQ 469 Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA-FSIRIPADIFTLQRRQ--------- 517 ERL + R +I+GLG + +P + D+F L Q Sbjct: 470 LRERLSYLTGRSCLDIDGLGYVACTALVQPLEPKQPPLADEGDLFNLTMEQLLPIKSLVL 529 Query: 518 ---------------QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 T G T + + I + L R I L IRHV Sbjct: 530 DPDSGLPKKDPKTGKDKEVTYFATQDGAPKAGATKMLEGIEAAKQQELWRIINGLSIRHV 589 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 G AR+LA + D L V VG IA A+ +++ ++ Sbjct: 590 GPVAARALATEFGDLDAIRDA----------DEERLAAVDGVGPTIATAVKQWFAEDWHV 639 Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 +E + + + +V TG+L+ R A E V G VS +S Sbjct: 640 EILEKWRAAGVRFVEERPEAGERHLAGLTVVITGSLEGWTRDGAAEAVRVRGGKVSGSVS 699 Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731 +KT ++VGD+PGSK +KA +LGV I++ E F LL + +R + D Sbjct: 700 KKTSFVVVGDSPGSKYDKAVKLGVPILDTEGFATLLSEGPDAVRPIEAD 748 >gi|255691906|ref|ZP_05415581.1| DNA ligase, NAD-dependent [Bacteroides finegoldii DSM 17565] gi|260622459|gb|EEX45330.1| DNA ligase, NAD-dependent [Bacteroides finegoldii DSM 17565] Length = 666 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 228/709 (32%), Positives = 355/709 (50%), Gaps = 51/709 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + L E+ H+ YY + P I D E+D R + A P+ D N P Sbjct: 2 DIKGRIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEEAHPEYK---DENSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G ++N + +V H P LSL ++ E++ F R+ + + E K D Sbjct: 59 MRVGSDLNKNFTQVAHKYPMLSLANTYSEEEVTDFYERVRKAL----NEDFEICCEMKYD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194 GT I++ YE GK V A RGDG G+DV+ ++ I +IP VL N P E+RGE+ + Sbjct: 115 GTSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 F ALN E +ANPRNAASG L+ N + + + G Sbjct: 175 WEVFEALNREKEVREEPLFANPRNAASGTLKLQNSSVVASRKLDAYLYYLLGENLPCDGH 234 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 YE LQ+ GF +++ +R+ T + + N R LP DG+V KV+ QK Sbjct: 235 YENLQEAAKWGFKISDLMRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKN 294 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LH Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLH 354 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER-HPDAQPFSFPSF 433 N D I+GL D+ +GD V V++ GE+IPK+ + V+ R + F + Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDVDARSFMVGEKVRFITT 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S++VR AAH C AC Q +++HF+SR A +I+GLG + +D Sbjct: 404 CPECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMDIDGLGPETVDM 457 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F++ I AD++ L + G+ S N+ I + + + ER Sbjct: 458 FYR----LGLIHNTADLYKLTIDDIKG------LERMGEKSAENIVTGIAQSKTVPFERV 507 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGIR VG +A+ +AK + + + D L+ + +G+ IAQ+I+ Sbjct: 508 IFALGIRFVGETVAKKIAKSFENIDELKRA----------DLERLVSIDEIGEKIAQSIL 557 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYV 670 ++ N N V L KE R E+++S ++ + +V +G R + +E + Sbjct: 558 TYFANEANCELVNRL-KEAGLQFYRTEEDLSGYTDKLAGQSIVISGVFIHHSRDEYKELI 616 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G +S KT I+ GDN G +KLEKAQ+LG+ I++E++FL L+ Sbjct: 617 EKNGGKNVGSISAKTSFILAGDNMGPAKLEKAQKLGITILSEDEFLKLI 665 >gi|149275978|ref|ZP_01882123.1| DNA ligase [Pedobacter sp. BAL39] gi|149233406|gb|EDM38780.1| DNA ligase [Pedobacter sp. BAL39] Length = 671 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 207/712 (29%), Positives = 365/712 (51%), Gaps = 46/712 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + + ++ +L +E++ H YY + P I D E+D + + +P+ A DP Sbjct: 1 MSKNEVKDKMDALVKELNQHTYDYYVLAMPTIADYEFDRKLAALNKLEQQYPEYA---DP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++GG++ + V H P LSL +N +DLR F R+ + + + E Sbjct: 58 NSPTQQVGGDITKNFTTVAHKWPMLSLGNTYNEQDLRDFDERVRKAIG----DQFQYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 K DG I++ YE K + A RGDG G+DV+ ++ I IP S IP + E+RGE Sbjct: 114 LKFDGVSISLTYEDQKLLRAVTRGDGTKGDDVTTNVKTIRNIPHKLSSGTIPSLFEIRGE 173 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 + + + F LN E +G YANPRN A+G ++ + ++ + T + Sbjct: 174 ILMHRAAFERLNKEREELGEVTYANPRNFAAGTVKMQDSREVAKRPLDCFLYYFNTDKSP 233 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K +E L+ ++ GF V+ R NT ++ + + + R L YDIDG+V KV+ ++ Sbjct: 234 FKTHWESLETLKSWGFHVSEHSRLGNTIEEVLEFISYWEKERFNLSYDIDGIVIKVNSYA 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q +LG A+SPRW IS+K+ ++ T L + Q+GRTG +TPVA L+PV + G + Sbjct: 294 QQAELGFTAKSPRWAISYKYKAQEVETILERVTYQVGRTGAVTPVANLKPVLLAGTTVKR 353 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN + I+ L D+ GD V V++ GE+IPK++++ +++R A + Sbjct: 354 ATLHNANEIERL-----------DLHEGDSVFVEKGGEIIPKIINVNLDKRENGAVKIIY 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C + ++R A+ C AC Q + +++HF+ R A +I+GLG + Sbjct: 403 PTQCPECGTTLIRKEGE------VAYYCPNDEACPPQIVGKIQHFIGRKAMDIDGLGDET 456 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ ++ ++ +D++ L +R + +++ I FG+ S+ N+ I + + Sbjct: 457 IETCYQH----GLLKHISDLYVLHQRTE----ELKAIDRFGERSIENMLKGIESSKQMPF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + +F LGIR+VG +AR LA + A +L + +G IA+ Sbjct: 509 AKVLFGLGIRYVGETVARKLAVATKNIDTLATA----------SLETLTAIDEIGQRIAE 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 +I+E++ P +I +E L + + S ++ K V +G + R + +E Sbjct: 559 SIIEYFAKPEHIQQIELLKSYGLQFESDEKEIELQSDKLTGKTFVISGVFENYSREELKE 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + G + + +S K + ++ GDN G SKLEKA++L + ++++++ L LL Sbjct: 619 IIELNGGKILSSISAKLNFLVAGDNMGPSKLEKAKKLNIPLISQDELLALLN 670 >gi|313203539|ref|YP_004042196.1| DNA ligase, nad-dependent [Paludibacter propionicigenes WB4] gi|312442855|gb|ADQ79211.1| DNA ligase, NAD-dependent [Paludibacter propionicigenes WB4] Length = 676 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 219/705 (31%), Positives = 348/705 (49%), Gaps = 47/705 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 + ++ SL +E+ H+ YY S P I D E+DA R+ + A P+ DPN P Sbjct: 2 IKDQIESLRRELEQHNYNYYVKSAPTISDFEFDAKLRQLQELEAAHPEFF---DPNSPTQ 58 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G ++ +V H P LSL ++ +++ F R+ + + E K DG Sbjct: 59 RVGSDIASGFEQVAHVYPMLSLGNTYSEGEVQDFYERVRKGL----NEDFELVCELKYDG 114 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 T I++ YE G V A RGDG G+DV+A ++ I +IP L N P+ E+RGE+ + + Sbjct: 115 TSISLTYEDGVLVRAVTRGDGEKGDDVTANVKTIRSIPLRLQGNYPKSFEIRGEILMPWS 174 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN E + +ANPRNAASG L+ N + + + + E Sbjct: 175 VFDDLNREREEQEEQLFANPRNAASGTLKLQNSSVVASRKLDAYLYYLLGENLPSDLHSE 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ GF +++ + T + ++ N R LP DG+V KV+ S Q+ LG Sbjct: 235 NLEAAHSWGFKISDATKVCRTLDEVSAFINYWDVERKNLPVATDGIVLKVNSLSQQRALG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G + A+LHN Sbjct: 295 FTAKSPRWAIAYKFQAEKAVTRLNSVSYQVGRTGAVTPVANLDPVQLSGTTVKRASLHNA 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L D+ +GD V V++ GE+IPK+ + + R F CP Sbjct: 355 DIIEAL-----------DLHIGDMVFVEKGGEIIPKITAVDKDARLLIGDKVQFIKSCPE 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + +VR AAH C AC Q +++HFVSR A NI+GLG + ++ ++ Sbjct: 404 CGAALVRFEGE------AAHYCPNENACPPQIKGKMEHFVSRKAMNIDGLGSETINLLYQ 457 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 ++ + ADI+TL + + G S N+ + K + I ER +F+ Sbjct: 458 ND----LLHNIADIYTL------KVPDLIRLERLGTKSAYNIKEGAEKSKEIPFERVVFA 507 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG IA+ LA + + + Q + L+ V +G IAQ++V ++ Sbjct: 508 LGIRFVGETIAKKLAYAFKNIEALEQA----------SYDELVAVDEIGGRIAQSVVAYF 557 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + NI + L + +K + + +V +GT K R + + + + G Sbjct: 558 SDSLNIEMLNRLKEYGLQMSLSEDKLQAHGTALAGLSIVISGTFSKHSRDEYKTMIERNG 617 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 +S KT I+ GDN G KL+KA++LGVK++NE+ FL ++ Sbjct: 618 GKNVGSVSAKTSFILAGDNMGPEKLKKAEKLGVKLVNEDDFLSMI 662 >gi|328887795|emb|CAJ70206.2| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Clostridium difficile] Length = 674 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 225/707 (31%), Positives = 373/707 (52%), Gaps = 50/707 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + E++ L + I+YH++ YY P I D EYD L + ++ P+L R + P Sbjct: 2 SVKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRI---DSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 N++GG+ ++ H P LSL ++ +DLR F R+ + + ++ + +E KID Sbjct: 59 NRVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVEFKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y G+F A RGDG GED+S + + +IP L +N + + VRGEVYISK Sbjct: 115 GLSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 ++F +N++ + +ANPRN A+G LR+L+P R L+ FV + E + Sbjct: 173 DNFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEEYDLESH 232 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L+ + LGF V+ + + ++ + R L Y+IDG+V KV+ + + Sbjct: 233 SESLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLDYEIDGMVIKVNNIKQRDE 292 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 +G A+SPRW I++KF ++ T+++DI +++GRTG +TP A LEPV + G ++ ATLH Sbjct: 293 MGYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLH 352 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NEDYI+ +DI++ D VLV++AG++IP+V+++I ER D F P C Sbjct: 353 NEDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKC 401 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C +R AA +C +C AQ + HFVSRDA NI+GLG+ + Sbjct: 402 PVCSEPTIRLEGE------AAVKCINM-SCPAQIRRGIIHFVSRDAMNIDGLGESIITLL 454 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + I+ +D++ +++ + G+ S NL +SI K + L R I Sbjct: 455 LNEK----IIQDVSDLYYIKKEDVVD------LERMGEKSADNLINSIEKSKENDLWRLI 504 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 LGI+ +G + A+ LA + + L + G I+A ++VE Sbjct: 505 NGLGIKFIGVKAAKILAYNFKDLDEVISATS----------EQLEELEEFGSIMANSVVE 554 Query: 615 FYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F++ +N+ + L S+ + V E K+V TGTL ++R+ A+E + + Sbjct: 555 FFKEDKNMNVINKLKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKEMIEK 614 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G ++ +S+ T ++ G+ GSKL KA LG+K+++EE+FL LL+ Sbjct: 615 RGGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEERFLELLK 661 >gi|226365931|ref|YP_002783714.1| NAD-dependent DNA ligase LigA [Rhodococcus opacus B4] gi|254781403|sp|C1B1S4|DNLJ_RHOOB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|226244421|dbj|BAH54769.1| NAD(+)-dependent DNA ligase [Rhodococcus opacus B4] Length = 697 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 223/709 (31%), Positives = 359/709 (50%), Gaps = 42/709 (5%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 R+ + L +++ H YY PII D E+DAL + + + +PDL P+ P Sbjct: 15 SVREHWNELAEDVRQHQFRYYVRDAPIISDGEFDALLGELNDLENQYPDL---RTPDSPT 71 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +GG H LSL+ ++ ++LR +I+R+ ++ + + E KID Sbjct: 72 QLVGGGFATDFASADHLERMLSLDNVFATDELRTWISRVE----QETGPDLHYLCEVKID 127 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGEV 191 G + + YE G+ V AA RGDG +GE+V+ R I IP L+ IP ++EVRGEV Sbjct: 128 GVALNLVYENGRLVRAATRGDGRTGEEVTLNARTIDDIPEKLTGTDKYPIPALLEVRGEV 187 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 + DF ALN ++ G+ P+ANPRN+A+G LR+ NP R L HGLG++ Sbjct: 188 FFRLEDFAALNAALVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGLGRSEGFE 247 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 QY+ + G PV+ + +V R + ++IDGLV KVDE S Sbjct: 248 PASQYDAYTALAAWGLPVSTHTVRVTGADAVVDRVQYWGEHRHDVEHEIDGLVVKVDETS 307 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG +R+PRW I++K+ ++A+T+LLDI + +GRTG +TP A +EPV + G+ ++ Sbjct: 308 LQRRLGSTSRAPRWAIAYKYPPEEATTKLLDIRVNVGRTGRVTPFAYMEPVTVAGSTVSL 367 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN +K + + +GD V++++AG+VIP+V+ +V+ R D F Sbjct: 368 ATLHNGSEVKR-----------KGVLIGDTVVLRKAGDVIPEVLGPVVDARTGDEYEFVM 416 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C + + + A RC C AQ ER+ H R AF+IE LG + Sbjct: 417 PANCPECDTPLA-----PAKEGDADIRCPNQQYCPAQLRERVFHVAGRGAFDIEVLGYEA 471 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +++ I D+F+L TT G + L D+++ ++ L Sbjct: 472 ATSLLEAKA----IGDEGDLFSLTEDDLLKTTLFRTKAGGLSANGRRLLDNLDSAKDKPL 527 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R + +L IRHVG AR+LA + S + L V VG IA Sbjct: 528 WRVLVALSIRHVGPTAARALAGEFGSLDRIRES----------SVEELAAVDGVGGTIAA 577 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 A+ E++ + V+ ++++ +E +V TG+L+ R +A+E + Sbjct: 578 AVAEWFGVDWHRQIVDKWSAAGVRMEDERDESIPRNLEGLSIVVTGSLETFSRDQAKEAI 637 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G + +S+KT ++ G++PGSK +KA +LGV +++E+ F LL+ Sbjct: 638 LVRGGKAAGSVSKKTAFVVAGESPGSKHDKAVELGVPVLDEDGFRRLLE 686 >gi|19552465|ref|NP_600467.1| NAD-dependent DNA ligase LigA [Corynebacterium glutamicum ATCC 13032] gi|62390131|ref|YP_225533.1| NAD-dependent DNA ligase LigA [Corynebacterium glutamicum ATCC 13032] gi|81760918|sp|Q8NR20|DNLJ_CORGL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|21324011|dbj|BAB98637.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Corynebacterium glutamicum ATCC 13032] gi|41325467|emb|CAF19947.1| DNA LIGASE [Corynebacterium glutamicum ATCC 13032] Length = 680 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 216/717 (30%), Positives = 351/717 (48%), Gaps = 52/717 (7%) Query: 12 LSIEQARKE--LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 ++ + A+ + L +++ YH D YY +P I D+++DAL ++ + P+LA Sbjct: 1 MTEDNAQLRRTWNDLAEKVRYHRDRYYNE-QPEIPDADFDALFKQLQQLEEDHPELAV-- 57 Query: 70 DPNGPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P +G + S V H LSL+ +++ ++LR ++ R + Sbjct: 58 -PDSPTMVVGAPVAEQSSFDNVEHLERMLSLDNVFDEQELRDWLGRT---------PAKQ 107 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PE 183 + E KIDG I + Y G+ AA RGDG GED++A R I IP L P Sbjct: 108 YLTELKIDGLSIDLVYRNGQLERAATRGDGRVGEDITANARVIEDIPHQLQGTDEYPVPA 167 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHG 242 ++E+RGEV+I+ DF +N + IA G KP+ANPRNAA+G LR+ N D R L HG Sbjct: 168 VLEIRGEVFITVEDFPEVNAQRIADGGKPFANPRNAAAGSLRQKNIEDVKKRRLRMISHG 227 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 +G T Q++ + G P + +V + R +++DGL Sbjct: 228 IGFTEGFSPASQHDAYLALAAWGLPTSPYTEAVTDPEDVVKKVSYWADHRHDALHEMDGL 287 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KVD+ + Q+ LG +R+PRW I++K+ ++ +T+LLDI + +GRTG +TP A +EPV Sbjct: 288 VIKVDDIASQRALGSTSRAPRWAIAYKYPPEEVTTKLLDIQVGVGRTGRVTPFAVMEPVL 347 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G+ ++ ATLHN+ +K + + +GD V++++AGEVIP+V+ +V R Sbjct: 348 VAGSTVSMATLHNQSEVKR-----------KGVLIGDTVVIRKAGEVIPEVLGPVVELRD 396 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 + + FP+ CP C +R+ RC +C Q RL + R AF+ Sbjct: 397 GTEREYIFPTLCPECGTRLA-----PAKADDVDWRCPNMQSCPGQLSTRLTYLAGRGAFD 451 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IE LG++ + ++ + + +F L S+ G + S L D++ Sbjct: 452 IEALGEKGAEDLIRT----GILLDESGLFDLTEDDLLSSNVYTTNAGKVNASGKKLLDNL 507 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 K + L R + +L IRHVG AR+LA Y S Q L Sbjct: 508 QKSKQTDLWRVLVALSIRHVGPTAARALAGRYHSIQALIDAP----------LEELSETD 557 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 VG IIAQ+ ++++ + V+ + +E +V TG L+ Sbjct: 558 GVGTIIAQSFKDWFEVDWHKAIVDKWAAAGVTMEEEVGEVAEQTLEGLTIVVTGGLEGFT 617 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +E + G S +S+KTD +++G+N GSK KA++LG++I++E F+ LL Sbjct: 618 RDSVKEAIISRGGKASGSVSKKTDYVVIGENAGSKATKAEELGLRILDEAGFVRLLN 674 >gi|255327262|ref|ZP_05368336.1| DNA ligase, NAD-dependent [Rothia mucilaginosa ATCC 25296] gi|255295542|gb|EET74885.1| DNA ligase, NAD-dependent [Rothia mucilaginosa ATCC 25296] Length = 735 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 235/733 (32%), Positives = 365/733 (49%), Gaps = 57/733 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E R E + L +I YY P + D+EYD L RR + I P + + + P Sbjct: 21 EALRAEYAELTDKIRAARRAYYNEDAPFLSDAEYDKLYRRLEIIEAEHPLIIAN---DSP 77 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GGE + VTH SLE +++ E+LR ++T+ + ++ + E KI Sbjct: 78 TQEVGGEAIEAFAPVTHLQRMYSLEDVFSFEELRAWLTKTEESTRNLTGSAPQWLTELKI 137 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193 DG + + Y G V AA RGDG +GEDV+ +R I +IP+ L+ N PE IE+RGEV+I Sbjct: 138 DGLAVNLLYRNGTLVRAATRGDGTTGEDVTHNVRTIASIPQQLTGENHPEEIEIRGEVFI 197 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 S DF LN+ MIA G+ P+ANPRNAA+G LR+ + +R L+ +VHG+G + + Sbjct: 198 SSADFEKLNESMIAAGKNPFANPRNAAAGSLRQKDAAITASRPLSMYVHGIGSRTGLDIA 257 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 QYE + G PV+ A + + N+ R +L ++IDG+V KV++F+ Q Sbjct: 258 TQYETYDLLASWGLPVSPYSEIAANTEAVFDFINKYGEQRHSLVHEIDGIVIKVNDFATQ 317 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 QLG +R PRW +++K+ ++ T+LLDI + +GRTG +TP +EPV + G+ + AT Sbjct: 318 AQLGYTSRVPRWAVAYKYPPEEVHTKLLDIRVDVGRTGRVTPYGVMEPVFVSGSTVERAT 377 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN+D +K + + +GD V++++AG+VIP++V +V R + F PS Sbjct: 378 LHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEIVAPVVALRDGTEREFVMPS 426 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S + + RCT +C AQ ER+ + SR AF+IE LG + Sbjct: 427 ECPSCGSPLA-----PGKEGDVDLRCTNPRSCPAQLTERVYYAASRGAFDIEALGFEAAK 481 Query: 493 FFFKSEDP-AFSIRIPADIFTLQRRQ-------------------------QTSTTKIEN 526 P + A +F+L + Sbjct: 482 ALTSPATPHTPPLTTEAHLFSLNIEDLREVTIEREKKVKGVGTGKMERVPYFYTKPTKAR 541 Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 + NL+ + K + L R + +L IRHVG AR+LA + S Q + Sbjct: 542 PEPKPTKNTLNLFAELEKAKQQPLWRVLVALSIRHVGPTAARALAAEFGSMQAIREA--- 598 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 D L V VG IA +I+E++ + V++ +++V Sbjct: 599 -------DRERLAAVDGVGTTIADSIIEWFAEDWHAEVVDSWAAAGVRMEDTRDESVERT 651 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 +E +V TGTL R A+E + G S +S++T ++ G N GSKL+KAQQLG+ Sbjct: 652 LEGLTVVVTGTLNGYTRDGAKEAIISRGGKASGSVSKRTHFVVAGANAGSKLDKAQQLGL 711 Query: 707 KIMNEEQFLFLLQ 719 K+++EE F LL+ Sbjct: 712 KVLDEEGFTALLE 724 >gi|110637718|ref|YP_677925.1| DNA ligase [Cytophaga hutchinsonii ATCC 33406] gi|123354667|sp|Q11VI1|DNLJ_CYTH3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110280399|gb|ABG58585.1| DNA ligase [Cytophaga hutchinsonii ATCC 33406] Length = 670 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 212/713 (29%), Positives = 364/713 (51%), Gaps = 49/713 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ QA + L + + YH++ YYQ I D E+D L + + FP ++ Sbjct: 1 MNDAQALARIEELNKVLHYHNNLYYQKDTTEISDFEFDTLLQELIELEKQFPLYLKA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + ++H P LSL ++ E++R+F R+ + +++ + E Sbjct: 58 DSPSQRVGGTVTKEFASISHKYPMLSLSNTYSEEEIREFDERVQKAVG----HAVEYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 K DG I+I Y+ G A RGDG G+DV+ I+ I +IP ++ S PE EVRGE Sbjct: 114 MKFDGVAISITYKNGMIAQAVTRGDGVRGDDVTNNIKTIKSIPLKIQSATFPEEFEVRGE 173 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 VY+ F +N E +G ANPRNAASG ++ + + + Sbjct: 174 VYLPYEMFERINQEREDIGEAALANPRNAASGTVKMQDSGIVAKRALDCFIYSLLQDSNK 233 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L +++ GF V++ + I+ Y N R LP DG+V KV++ Sbjct: 234 QPTHAAALAQLKEWGFRVSDSYKVCKNVDEIIQYINHWSEERFKLPLATDGIVIKVNDLR 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG A+SPRW I++KF ++AST +L ++ Q+GRTG +TPVA L PV++ G + Sbjct: 294 LQSELGMTAKSPRWAIAYKFKAEEASTPILSVEYQVGRTGAVTPVANLAPVHLAGTTVKR 353 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN + ++ L ++ +GD V V++ GE+IPK+ + V++R +Q F Sbjct: 354 ATLHNANEMERL-----------NLHIGDTVFVEKGGEIIPKITRVDVSKRIAGSQMIPF 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 CP+C ++++R AA C C+ Q +++HF+ R A NI+G+G + Sbjct: 403 IQNCPVCDTKLIRIEGE------AAWYCPNDKGCAPQITGKIEHFIQRKAMNIDGIGSET 456 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ ++ + IR AD++TL Q + FG+ SVTN+ + I + Sbjct: 457 IELLYQKK----LIRNVADLYTLTYDQLI------QLDRFGEKSVTNVLNGIEASKQTPF 506 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + +F++GIR+VG+ +A LA ++ S + L++ P +G IAQ Sbjct: 507 KSVLFAIGIRYVGSTVAEKLALHFKSINALEKA----------SIEELLQAPEIGIKIAQ 556 Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +I+E++ N+ +E L K + HE K S + K V +G + +R + + Sbjct: 557 SIIEWFSVDTNVQLIEDLKKAGVKLELSEHEILKPESDKFAGKSFVISGVFENYERDELK 616 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + + + G +S+ ++ K + ++ G+N G +KLEKAQ+L + I++E +F+ LL Sbjct: 617 DLILKNGGKISSGITGKLNYLVAGENMGPAKLEKAQKLNITILSEAEFISLLN 669 >gi|295084199|emb|CBK65722.1| DNA ligase, NAD-dependent [Bacteroides xylanisolvens XB1A] Length = 666 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 227/709 (32%), Positives = 355/709 (50%), Gaps = 51/709 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 ++++ L E+ H+ YY + P I D E+D R + A P+ D N P Sbjct: 2 DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEYK---DENSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G ++N + +V H P LSL ++ ++ F R+ + + E K D Sbjct: 59 MRVGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRVRKAL----NEDFEICCEMKYD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194 GT I++ YE GK V A RGDG G+DV+ ++ I +IP VL N P E+RGE+ + Sbjct: 115 GTSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 F LN E A +ANPRNAASG L+ N + + + G Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYLLGDNLPCDGH 234 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 YE LQ+ GF +++ R+ T + + N R LP DG+V KV+ QK Sbjct: 235 YENLQEAAKWGFKISDLTRKCQTLEDVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKN 294 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LH Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLH 354 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER-HPDAQPFSFPSF 433 N D I+GL D+ +GD V V++ GE+IPK+ + + R + F Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFIVN 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S++VR AAH C AC Q +++HF+SR A NI+GLG + +D Sbjct: 404 CPECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDM 457 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F++ I AD++ L + G+ S N+ I + + + ER Sbjct: 458 FYR----LGLIENTADLYKLTADDIKG------LDRMGEKSAENIVTGIAQSKTVPFERV 507 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGIR VG +A+ +AK + + + Q D L+ + +G+ IAQ+I+ Sbjct: 508 IFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIAQSIL 557 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYV 670 ++ N N V L KE + R E+++S ++ + +V +G R + +E + Sbjct: 558 AYFANESNRELVNRL-KEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFIHHSRDEYKELI 616 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G +S KT I+ GDN G +KLEKA++LG+ I++E++FL L+ Sbjct: 617 EKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665 >gi|325335472|gb|ADZ11746.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Riemerella anatipestifer RA-GD] Length = 669 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 219/711 (30%), Positives = 354/711 (49%), Gaps = 46/711 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S++ + ++ L +E+ H+ YY P I D E+D + + A+P+ A D Sbjct: 1 MSLDDIKHKIEELREELHQHNYNYYVLDTPSISDYEFDMMLEELKELELAYPEFA---DN 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++GG + + V H SL+ +N EDL + R+ + D I + E Sbjct: 58 NSPTQRVGGNITKNFPTVEHRHRMYSLDNSYNFEDLSDWQNRLIKSL---DTTDIEYVAE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG I+I YE G F A RGDG G++++A ++ I IP + P +RGE+ Sbjct: 115 LKYDGASISILYENGAFKQAITRGDGFQGDEITANVKTISDIPLKIKGEYPNTFYIRGEI 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 Y++K F +N G + NPRN ASG L+ + T++ + V E Sbjct: 175 YLTKKHFNLINKAREKEGLDLFMNPRNTASGSLKMQDSTEVRKRKLSAVLYQVVAEETPV 234 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 K +E+L++ + GF + + + ++ + R L ++IDG+V KV+ Sbjct: 235 KTHWELLEQTKDWGFKTSQQAKLCKNLDEVKAFIDYWDKERQHLDFEIDGIVIKVNSLKQ 294 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+ LG A+SPRW +++KF ++ T+L I Q+GRTG +TPVA L+PV + G ++ A Sbjct: 295 QQLLGYTAKSPRWAMAYKFKAEKVETQLESISYQVGRTGAITPVANLKPVLLAGTVVKRA 354 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHNED I+ L ++ D V V++ GE+IPK+V + +R P+A + Sbjct: 355 SLHNEDIIRKL-----------NLHNQDFVYVEKGGEIIPKIVGVNEEKRQPNATLVEYI 403 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 S CP C + +VR+ AAH C C Q + ++ H+VSR A NIE LG + + Sbjct: 404 SHCPECNTPLVRNEGE------AAHFCPNEAHCPPQVVGKMIHYVSRKALNIENLGSETI 457 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F+ I AD +TL + Q + + + S N+ D I K + I E Sbjct: 458 EQLFRE----GLISNIADFYTLTKEQ------LLPLERMAEKSAQNILDGIEKSKQIPFE 507 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + +F LGI+HVG +A+ L K + + + L V VG IA++ Sbjct: 508 KVLFGLGIKHVGETVAKKLVKNFHTIDGLKKAT----------LEELTEVEDVGIKIAES 557 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHKAQEY 669 +V ++QN NI ++ L N VS +E K +FTG L R +A+E Sbjct: 558 LVNYFQNEENIEILDRLKSYGIQLEQEENTNTKVSDALEGKTFLFTGKLSLFTREQAEEM 617 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQ 719 V + G + +S+ + ++VG+ GSKL+KAQ LG V I++E++FL L+ Sbjct: 618 VEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQTLGTVTILDEQEFLDLIN 668 >gi|269792727|ref|YP_003317631.1| DNA ligase, NAD-dependent [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100362|gb|ACZ19349.1| DNA ligase, NAD-dependent [Thermanaerovibrio acidaminovorans DSM 6589] Length = 673 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 229/713 (32%), Positives = 360/713 (50%), Gaps = 50/713 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + AR + L + I +HD YYQ + P I D EYDAL R + +FPDL P Sbjct: 1 MDRSAARSRMEELAELIRHHDRLYYQENSPEITDQEYDALFRELVDLERSFPDL---RLP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++ G + + ++ HS P LSL+ + E++ F+ R+Y S E Sbjct: 58 DSPTLRVSGSPSEAFKRLPHSEPMLSLDNAVSREEVSDFLRRLYDALG----GSAPVVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK+DG +++ Y G + RGDG GEDV++ + I +P ++ +EVRGEV Sbjct: 114 PKLDGLAVSLLYRGGVLIRGLTRGDGSVGEDVTSNVMTIRDLP--KRIDYMGELEVRGEV 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+S+ DF ALN G P+ANPRNAA+G LR+L+P R L+ F++ + E+ Sbjct: 172 YMSRRDFAALNQRREEEGLPPFANPRNAAAGSLRQLDPRVTAQRNLSCFLYHVVNHREVG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K Q E+L ++ FPV R ++ Y ++ R + P D DG+V K+D Sbjct: 232 LKTQEELLLWLKGRSFPVQEDFRLCRDPEEVLEYLDDWDRRRHSYPADTDGVVIKLDSLE 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ LG RSPRW ++ KF ++ TR+L I++ +GRTG++TP A LEPV + G + Sbjct: 292 GREVLGSTNRSPRWAVAFKFPPEERPTRVLSIEVSVGRTGVVTPTAVLEPVRLSGTEVRR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D + +D+RVGD V V++AGE+IP+V+ + + R PF Sbjct: 352 ASLHNFDELAR-----------KDVRVGDTVWVRKAGEIIPEVIRVDLGLRPEGTAPFVP 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C SR+VR A RC +C AQ ER+ HF SRD ++ GLG++ Sbjct: 401 PEGCPSCGSRLVRLPGE------VAIRCINP-SCPAQMKERIIHFASRDGMDVRGLGEKV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ AD+F L S + G+ S +NL +++ R+ L Sbjct: 454 ASQLVDR----GMVKDLADLFFLTMEDWLS------LDRMGERSASNLVRALDVARDRPL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + I++LGI VG A+ LA + + L V VG ++A+ Sbjct: 504 RKLIYALGIPGVGERTAQDLADRFGRLEALMDASE----------EELASVEGVGPVVAR 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ +F++N + V L +E + VFTG L ++R +AQ+ V Sbjct: 554 SVRDFFRNDSTVRLVRRLRDAGVRM--EERPTAGGPLEGMRFVFTGELGSMRRKEAQDLV 611 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 +LG VS +S+ ++ G+ GSKL +A+ LGV I +E++FL L++++ Sbjct: 612 IRLGGKVSDSVSKGVTALVAGEGGGSKLSRARALGVPIWSEDRFLELVREHTD 664 >gi|218281363|ref|ZP_03487841.1| hypothetical protein EUBIFOR_00406 [Eubacterium biforme DSM 3989] gi|218217455|gb|EEC90993.1| hypothetical protein EUBIFOR_00406 [Eubacterium biforme DSM 3989] Length = 667 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 236/706 (33%), Positives = 360/706 (50%), Gaps = 47/706 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S+ + + L +E+ + YY Y P I D EYD L + A+ +P+ D Sbjct: 1 MSMMDEKARILELRKELEKYSIEYYVYDNPSITDQEYDRLMQELMALEEKYPE---MYDA 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P +I G + KVTH LSL ++N E++ +F+ RI + F +E Sbjct: 58 TSPSQRIIGSVLDGFEKVTHDTQMLSLSNVFNKEEIEEFVQRISESVS-----NPEFVVE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG + + Y+ G F A RGDG GEDVS ++ I +IP + +EVRGEV Sbjct: 113 CKYDGLAMALLYDDGNFTRAVTRGDGIVGEDVSNNVKTILSIPMHIPEMRH--VEVRGEV 170 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 Y+ K F LN G P+ANPRNAA+G +R+L+ + +R L+ + + S+ Sbjct: 171 YMPKASFEQLNKRQEEKGLAPFANPRNAAAGSIRQLDSSICASRKLDAYWYYFQNASDFA 230 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + Q E LQ M + F N + T I + E++ R LPY+IDG+V K++ + Sbjct: 231 VQTQEEALQAMSKMHFRTNPLRKVCTTVEQIWQFIQEIQEKREDLPYEIDGMVIKLNNLA 290 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG A+ PR+ ++KF ++ TRL DI I +GRTG +TP A LEPV + G ++ Sbjct: 291 DQRRLGSTAKVPRYATAYKFPAQEVLTRLKDIVITVGRTGKITPNAVLEPVRVAGTTVSA 350 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A LHNED I +D+R+GD V+V++AGE+IP+VV + R P+ F Sbjct: 351 AQLHNEDMI-----------VNKDLRIGDIVVVRKAGEIIPEVVTSVPERRDGTQVPYKF 399 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CPIC S +VR + AAH C C A+ +E + HF SRDA NI+ LG ++ Sbjct: 400 PTTCPICGSHLVRLPDE------AAHYCIN-QDCPARVVESMIHFASRDAMNIDTLGDKK 452 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + DI+ L R ++ G+ SV L +SI K + L Sbjct: 453 IEQLHEW----GYLNSIEDIYFLDRY----YDELIEKPGYQKKSVDKLLESIEKSKKQPL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ++ LGIR VG + A LA+ + L+ + +G I A Sbjct: 505 GVILYGLGIRQVGKKAAMILAEQFGDIDTLMHAC----------VDELVLIHDIGLITAS 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++V F++ +N+ ++ L + ++ V S NK V TGTL+ R++A+ + Sbjct: 555 SVVAFFKEEKNLHLIDVLKQAGCNFKQEKKQVVESRFTNKTCVLTGTLEHYTRNEAKAIL 614 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 LGA VS +S+KTD +I G GSKL KAQ LGV M+EE+F+ Sbjct: 615 ESLGANVSGSVSKKTDYVIYGTAAGSKLTKAQSLGVMTMSEEEFVQ 660 >gi|161723110|ref|YP_288664.2| NAD-dependent DNA ligase LigA [Thermobifida fusca YX] Length = 731 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 231/736 (31%), Positives = 350/736 (47%), Gaps = 64/736 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 R+ + L Q++ + YY PII D+EYD L + +P L P+ Sbjct: 13 PADVRERHARLSQDLDDYSYRYY-LGSPIISDAEYDQLMAELRDLEAQYPSLV---TPDS 68 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+G ++ V H SL+ ++ L + R+ + F E K Sbjct: 69 PTQKVGAPISNEFAPVEHLERMQSLDNAFSDAQLEAWAHRV-----SAEVPVDAFLCELK 123 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGE 190 IDG + + YEKG+ V AA RGDG GED++ IR I T+P PE++EVRGE Sbjct: 124 IDGLAVALVYEKGRLVRAATRGDGRIGEDITLNIRTIDTVPLRLDESRYPAPELLEVRGE 183 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V++ F LN + G+ P+ANPRNAA+G LR+ +P +R L+ VHG+G + Sbjct: 184 VFLPVKAFEQLNSRLADEGKPPFANPRNAAAGSLRQKDPRVTASRPLSMLVHGIGAHRGV 243 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q + + + G PV++ +R +T + Y R Y+IDG+V KVD+ Sbjct: 244 TITHQSQSYELLAAWGLPVSDRIRVVSTLDEVREYIAYYAEHRHDPEYEIDGVVVKVDDV 303 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ++LG +R+PRW I++K+ ++ +T+LLDI +GRTG +TP A LEPV + G+ + Sbjct: 304 SLQRRLGSTSRAPRWAIAYKYPPEEVTTKLLDIKTSVGRTGRVTPYAVLEPVKVAGSEVE 363 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN + + + +GD V+V++AG++IP+VV +V +R +PF Sbjct: 364 FATLHNAQEVAR-----------KGVLIGDTVVVRKAGDIIPEVVGPVVEKRTGTERPFV 412 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C S + + + RC C Q ERL R A +IE LG Sbjct: 413 MPTECPECGSPLGQQ-----KEGDVDLRCPNTRYCKGQLRERLAFIAGRKALDIEALGYV 467 Query: 490 QLDFFFKSEDPA-FSIRIPADIFTLQRRQ------------------------QTSTTKI 524 + +PA +R D+F+L Q + Sbjct: 468 AATALTQPLEPAEPPLRDEGDLFSLTVEQLLPIRTLVLDPDTAEPKIDPKTGKPKVVSFF 527 Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 N G V L+ + + + L R + +L IRHVG A LA+++ S AQ Sbjct: 528 ANQKGEPKKIVEKLFQQLEEAKKRPLWRVLVALSIRHVGPRAAEDLARHFRSLDAIAQAS 587 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 L V +G IA++IV+++ + VE + Sbjct: 588 E----------EELEAVEGIGPTIARSIVDWFSVDWHREIVEKWRAAGVRMEEEGADDGP 637 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 ++ V TGTL+K R A+E V +LG V+ +SRKTD ++VG NPGSK +KA +L Sbjct: 638 RLLDGITTVITGTLEKYSRDGAKEAVQKLGGRVTGSVSRKTDFVVVGANPGSKYDKAVKL 697 Query: 705 GVKIMNEEQFLFLLQQ 720 GV I++E F LL Q Sbjct: 698 GVPILDEAGFEVLLTQ 713 >gi|123774771|sp|Q47SC6|DNLJ_THEFY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|71914739|gb|AAZ54641.1| NAD-dependent DNA ligase [Thermobifida fusca YX] Length = 745 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 231/736 (31%), Positives = 350/736 (47%), Gaps = 64/736 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 R+ + L Q++ + YY PII D+EYD L + +P L P+ Sbjct: 27 PADVRERHARLSQDLDDYSYRYY-LGSPIISDAEYDQLMAELRDLEAQYPSLV---TPDS 82 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+G ++ V H SL+ ++ L + R+ + F E K Sbjct: 83 PTQKVGAPISNEFAPVEHLERMQSLDNAFSDAQLEAWAHRV-----SAEVPVDAFLCELK 137 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGE 190 IDG + + YEKG+ V AA RGDG GED++ IR I T+P PE++EVRGE Sbjct: 138 IDGLAVALVYEKGRLVRAATRGDGRIGEDITLNIRTIDTVPLRLDESRYPAPELLEVRGE 197 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V++ F LN + G+ P+ANPRNAA+G LR+ +P +R L+ VHG+G + Sbjct: 198 VFLPVKAFEQLNSRLADEGKPPFANPRNAAAGSLRQKDPRVTASRPLSMLVHGIGAHRGV 257 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q + + + G PV++ +R +T + Y R Y+IDG+V KVD+ Sbjct: 258 TITHQSQSYELLAAWGLPVSDRIRVVSTLDEVREYIAYYAEHRHDPEYEIDGVVVKVDDV 317 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ++LG +R+PRW I++K+ ++ +T+LLDI +GRTG +TP A LEPV + G+ + Sbjct: 318 SLQRRLGSTSRAPRWAIAYKYPPEEVTTKLLDIKTSVGRTGRVTPYAVLEPVKVAGSEVE 377 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN + + + +GD V+V++AG++IP+VV +V +R +PF Sbjct: 378 FATLHNAQEVAR-----------KGVLIGDTVVVRKAGDIIPEVVGPVVEKRTGTERPFV 426 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C S + + + RC C Q ERL R A +IE LG Sbjct: 427 MPTECPECGSPLGQQ-----KEGDVDLRCPNTRYCKGQLRERLAFIAGRKALDIEALGYV 481 Query: 490 QLDFFFKSEDPA-FSIRIPADIFTLQRRQ------------------------QTSTTKI 524 + +PA +R D+F+L Q + Sbjct: 482 AATALTQPLEPAEPPLRDEGDLFSLTVEQLLPIRTLVLDPDTAEPKIDPKTGKPKVVSFF 541 Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 N G V L+ + + + L R + +L IRHVG A LA+++ S AQ Sbjct: 542 ANQKGEPKKIVEKLFQQLEEAKKRPLWRVLVALSIRHVGPRAAEDLARHFRSLDAIAQAS 601 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 L V +G IA++IV+++ + VE + Sbjct: 602 E----------EELEAVEGIGPTIARSIVDWFSVDWHREIVEKWRAAGVRMEEEGADDGP 651 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 ++ V TGTL+K R A+E V +LG V+ +SRKTD ++VG NPGSK +KA +L Sbjct: 652 RLLDGITTVITGTLEKYSRDGAKEAVQKLGGRVTGSVSRKTDFVVVGANPGSKYDKAVKL 711 Query: 705 GVKIMNEEQFLFLLQQ 720 GV I++E F LL Q Sbjct: 712 GVPILDEAGFEVLLTQ 727 >gi|291544905|emb|CBL18014.1| DNA ligase, NAD-dependent [Ruminococcus sp. 18P13] Length = 660 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 222/706 (31%), Positives = 360/706 (50%), Gaps = 51/706 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + EQA+ L+ L +EI H+ YY P I D +YDAL R AI +P L P Sbjct: 1 MDFEQAKLRLAQLTKEIEQHNYAYYVLDAPTIEDCDYDALMRELKAIETEYPQLL---SP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG KVTH++ SL +++ E++ F+ + FT+E Sbjct: 58 HSPSQRVGGMALSDFQKVTHTVQMGSLRDVFSFEEVAAFVAECQQKLDAP-----RFTVE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG +++ YE G + RGDG GEDV+ IR I +IP L + P ++EVRGEV Sbjct: 113 PKIDGLSVSLLYENGVLTCGSTRGDGFVGEDVTGNIRTIRSIPLRL-EDAPALLEVRGEV 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 ++ ++ FL L ++ +P+ NPRNAA+G LR+ + R L+ FV + + + Sbjct: 172 FMPRDSFLKLVEQQELADEQPFKNPRNAAAGSLRQKHAEVTAKRRLDIFVFNVQQMTGGL 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L MR LGF R T+ I + + R+ LPYDIDG+V KV++ + Sbjct: 232 HGTHAESLTWMRKLGFKTVE-FRLCETYQEIREQISRIGEERAKLPYDIDGVVIKVNDLA 290 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ +G + P+W +++KF ++ TRL I++ +GRTG +TPVA +P+ + G ++ Sbjct: 291 QRQVMGATTKVPKWAVAYKFPPEEKETRLQKIEVNVGRTGAITPVAVFDPITLAGTSVSR 350 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A LHN+ +I +DIRVGD + V++AGE+IP+V+ + ++ PD+ P++ Sbjct: 351 AVLHNQQFI-----------ADKDIRVGDMIRVRKAGEIIPEVLASVSHQ--PDSVPYTL 397 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C + VRD + C AQ L+ + HF S+ A NI+G+G Sbjct: 398 PTHCPVCGTEAVRDPEESVLR-------CPNTDCPAQLLKNVIHFASKGAMNIDGMGPAI 450 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + IR AD++TL S + F + S NL D+I K ++ L Sbjct: 451 AQALLDN----GKIRSVADLYTLTMEDLLS------LDRFAEKSARNLLDAIEKSKSAPL 500 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +R IF LGIR +G A L + S + L + G I+A+ Sbjct: 501 DRVIFGLGIRGIGQRAAVLLCDRFPSVEQIMNA----------SVEQLAEIDGFGSIMAE 550 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++V+ ++ P + V+ L + + V TGTL ++R +A++ + Sbjct: 551 SVVQAFREPHRVALVQRLQACGVTMQYQAAQAQDQRFVGMTFVLTGTLPTMKRDEAKKLI 610 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 G VS +S+KT +++ G++ GSKL KA+ LGV++++E + L Sbjct: 611 ESFGGKVSGSVSKKTSVVVAGEDAGSKLMKAESLGVEVIDEAELLR 656 >gi|15606063|ref|NP_213440.1| DNA ligase (NAD dependent) [Aquifex aeolicus VF5] gi|7673992|sp|O66880|DNLJ_AQUAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|2983242|gb|AAC06838.1| DNA ligase (NAD dependent) [Aquifex aeolicus VF5] Length = 720 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 237/725 (32%), Positives = 388/725 (53%), Gaps = 51/725 (7%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 R++ ++ LS E+A+K L + I YHD YY + P+I D +YD L R I +P Sbjct: 19 RKIKDVKVLSFEEAKKLAEDLREVIRYHDYKYYVEANPVIPDYDYDRLFRALKEIEKKYP 78 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 +L P+ P ++ E++ V H P LSL+ ++ ++LR+F R+ + + Sbjct: 79 ELI---TPDSPTQRVASEISGEFPTVKHYTPMLSLDNAYSEDELREFDRRVRQITGLEV- 134 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 + + +EPK+DG I + YE FV A RGDG GED++ ++ I TIP + Sbjct: 135 --VEYAVEPKLDGAGIALVYENDLFVRGATRGDGEYGEDITNNLKTIKTIPLKAEFSRFG 192 Query: 184 II--EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY----LN 237 I E+RGEV I K++F LN E + G P+ANPRNAA+G +R+ +P ++ + + Sbjct: 193 IKLAEIRGEVVIRKDEFQKLNKERMEEGLPPFANPRNAAAGSIRQKDPKEVAKRNLEAIV 252 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 + + + + + + ++ Y E + R + PY Sbjct: 253 YHLSYVEPPETEPPTHYESLKMLHTLGFKTLFKDTKVCKGIDEVIEYCKEWEKKRDSYPY 312 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 +IDG+V KV++ L K LG + PRW I++KF ++A T+L+D+ Q+GRTG +TPV + Sbjct: 313 EIDGMVVKVNDRRLWKVLGYTSHHPRWAIAYKFKPRRAVTKLVDVVFQVGRTGTITPVGK 372 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 LEPV +GG +++ +L NED+I+ +DIR+GD V+V+RAG+VIP VV+++ Sbjct: 373 LEPVELGGVTVSSVSLFNEDFIR-----------EKDIRIGDWVVVERAGDVIPYVVEVL 421 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 +R + +P FP +CP C S +V+ A RC ++C AQ + R+KH+ S Sbjct: 422 KEKRTGEEKPVEFPKYCPSCGSELVKLPEE------VAIRCIN-ISCPAQSVLRIKHWAS 474 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 RDA +I GLG + F + D++ L T I + GFG+ S N Sbjct: 475 RDAMDIRGLGDATIKLLFNR----GLAKDVGDLYYL------KLTDILKLPGFGEKSAMN 524 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L +I + +N L+R ++ LGIR+VG A+ +A + IN++ + Sbjct: 525 LLKAIEESKNRPLDRVLYGLGIRYVGQTTAKKIA----------EIINSVWDLKDIPLEK 574 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657 L+R+ +G +A++I EF+ P+N+ ++ L K + ++ V+ ++ K VFTGT Sbjct: 575 LMRLEGIGYKVARSIKEFFNIPQNLEVLKKLEKAGVNLAKKVKEKVADVLKGKTFVFTGT 634 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLF 716 L R KA E V LG S ++ KTD ++VG +PG +KL KA++ GVK + EE+F+ Sbjct: 635 LDCCSREKAGEIVEMLGGKFSNSVTSKTDYLVVGKDPGATKLSKAKKYGVKTITEEEFVN 694 Query: 717 LLQQY 721 +++ Y Sbjct: 695 MIKDY 699 >gi|227515527|ref|ZP_03945576.1| DNA ligase (NAD(+)) [Lactobacillus fermentum ATCC 14931] gi|227086140|gb|EEI21452.1| DNA ligase (NAD(+)) [Lactobacillus fermentum ATCC 14931] Length = 679 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 242/726 (33%), Positives = 391/726 (53%), Gaps = 51/726 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M K++ + L+ +QA+ EL+ L +++ YY+ P + D YD +R I Sbjct: 1 MSKQE--AVSELTKQQAQAELTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIEQ 58 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FPDL P+ P ++GG L KV H IP LS+ +++ +L F R Sbjct: 59 RFPDLVV---PDSPTQRVGGAAESQLNKVIHEIPMLSMGDVFSPAELADFNRRQQD--NS 113 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 + LE KIDG +++ YE G+ V + RG+G GEDV+ ++ I +IP+VL Sbjct: 114 DVKVDFDYNLELKIDGLSLSLVYENGRLVQGSTRGNGTIGEDVTENVKTIKSIPQVLPEP 173 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 + +E RGE Y+ K F+ LN+ A G+ +ANPRNAA+G LR+L+P R L+ F Sbjct: 174 LS--LEFRGECYMPKEAFVKLNERREAEGQPVFANPRNAAAGSLRQLDPKVTAARQLDTF 231 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 ++ + + Q + L+KMR LGF VN R ++ + +Y E R LPY I Sbjct: 232 MYYVPDYQALGVTTQAQALEKMRALGFAVNPNYRVVHSQAELTAYIEEYTEKRDQLPYGI 291 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KV++ + Q LG + PRW I++KF ++ +T + DI+ +GRTG +TP A ++ Sbjct: 292 DGIVEKVNDLATQVALGNTVKVPRWEIAYKFPPEEQATVVRDIEWTVGRTGNVTPTAVMD 351 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G ++ A+LHN DY+ +DIR+GD VL+ +AG++IP++ +I+ Sbjct: 352 PVQLAGTTVSRASLHNPDYL-----------AEKDIRLGDTVLLHKAGDIIPEISRVIIE 400 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R D++P+ P+ CP C + +V + A RC + C AQ E L HF SR+ Sbjct: 401 KRPADSKPYEVPTTCPECGADLVHLDDE------VALRCVNPM-CPAQIKEGLAHFASRN 453 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A NI+GLG + ++ + ++ AD++ L+ Q + + FG+ S++NL Sbjct: 454 AMNIDGLGPKIIEQLWDK----GMVKDVADLYRLEAAQLLT------LPKFGEKSISNLL 503 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I R+ S ER +F LGIRHVGA++A+ LA + S D ++ Sbjct: 504 TAIANSRHNSCERLLFGLGIRHVGAKVAQLLAAEFKSVDALMAA----------DAATIS 553 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTG 656 V +G II A+ ++QN + + L + S+E K++V TG Sbjct: 554 AVDSIGPIIGDAVATYFQNEQVHQLIAELKEVGVNMDYLAPTTSATESAEWAGKRVVLTG 613 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 L K+ R +AQE+++ GA V+ +S+KTD++I G+ GSKLEKAQ LG+++ +E++F Sbjct: 614 KLTKMTRGQAQEWLSARGASVTGSVSKKTDLLIAGEKAGSKLEKAQTLGIEVWDEDRFDQ 673 Query: 717 LLQQYN 722 +++ N Sbjct: 674 AMKEEN 679 >gi|227832930|ref|YP_002834637.1| DNA ligase [Corynebacterium aurimucosum ATCC 700975] gi|262182581|ref|ZP_06042002.1| NAD-dependent DNA ligase LigA [Corynebacterium aurimucosum ATCC 700975] gi|254781299|sp|C3PFU5|DNLJ_CORA7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|227453946|gb|ACP32699.1| DNA ligase [Corynebacterium aurimucosum ATCC 700975] Length = 674 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 209/714 (29%), Positives = 356/714 (49%), Gaps = 50/714 (7%) Query: 12 LSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 +S ++E S L QE+ H + YY +P I D+++D L +R A+ P+L + Sbjct: 1 MSDAVDIQREWSELAQEVRKHRELYYN-GEPSIPDADFDELFQRLLALEAEHPEL---QT 56 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P+ P ++G + H SL+ +++ E+L+ ++ R + + Sbjct: 57 PDSPTQQVGAAP-EGAVDIEHLERLYSLDNVFSAEELQDWLDRT---------PAEAYLT 106 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE----IIE 186 E KIDG I + Y GK V AA RGDG GED++A R IP IP L+ ++E Sbjct: 107 ELKIDGLSIDLVYRDGKLVTAATRGDGRVGEDITANARVIPDIPHELTGTDEYPVPSLVE 166 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245 VRGEVY+ ++F +N G+ +ANPRNAA+G LR +P D R L+ HG+G Sbjct: 167 VRGEVYMRPDEFEEINAARREDGKPTFANPRNAAAGGLRMKDPEDVKKRRLHMVCHGIGA 226 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 Q++ + + GFPV+ ++ T + + R +++DGLV K Sbjct: 227 RERFQPTSQHDAYKALEAWGFPVSPYTQRVTTAKEVQERVTYWEEHRHDAYFEMDGLVIK 286 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ + Q+ LG +R+PRW I++K+ ++ +T+LL+I++ +GRTG +TP A +EPV + G Sbjct: 287 VDDLASQRALGATSRAPRWAIAYKYPPEEVTTKLLNIEVGVGRTGRVTPFAIMEPVFVSG 346 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + ++ ATLHN+ +K +++ +GD +++++AGE+IP+V+ ++++R Sbjct: 347 STVSMATLHNQFEVK-----------NKNVLIGDTIIIRKAGEIIPEVLGPVLDKRDGSE 395 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + FP CP C +++ + RC +C AQ RL++ SR A +I Sbjct: 396 TEWVFPENCPACGTKLA-----PQKEGDQDWRCPNTRSCPAQLAARLEYLASRKALDIGE 450 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG++ S + AD+F L + ++ G + S L +++ Sbjct: 451 LGEKAAADLISS----GVLEDEADLFDLDEQALLKSSVYTTQKGALNASGKKLLENLKTA 506 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R R + +L IRHVG AR+LA + S + L VG Sbjct: 507 RQAEFWRVLVALSIRHVGPIAARALATRFGSMEVLRAA----------SVEELADTDGVG 556 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 IIA++ ++++ + V+ + +E +V TGTL+ R Sbjct: 557 TIIAESFKQWFEVDWHDNIVQKWTAAGVTMEEESSDKPAQTLEGITVVVTGTLENFTRDS 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + G S+ +S+KT+ ++VG+N GSK +KA+ LG+ I++EE F LL+ Sbjct: 617 AKEAIITRGGKASSSVSKKTNYVVVGENAGSKEQKARDLGLTILDEEGFTRLLE 670 >gi|296126514|ref|YP_003633766.1| DNA ligase, NAD-dependent [Brachyspira murdochii DSM 12563] gi|296018330|gb|ADG71567.1| DNA ligase, NAD-dependent [Brachyspira murdochii DSM 12563] Length = 663 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 241/707 (34%), Positives = 383/707 (54%), Gaps = 48/707 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E+A++++ L + I+YH+ YY P I D EYD L R + + FP+L + Sbjct: 1 MNKEEAKQKIKQLTETINYHNKLYYTDDNPEIEDYEYDKLFRELENLEREFPELKKD--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P NK+GG + K H I SL + N E+ F R+ R D ++I +T+E Sbjct: 58 DSPTNKVGGTILEKFEKFEHPIAMYSLSNVMNEEEFLDFDNRMQREL---DASNIKYTVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG + + YEKGK A+ RGDG GE+V+ ++ + +P+ + + VRGE Sbjct: 115 NKFDGLALELIYEKGKLTVASTRGDGQVGENVTNNVKMMSNVPKSIKEKNK--LIVRGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 I+K DF ALN E + P+AN RNAASG LR+L+ + R L FF + + + Sbjct: 173 LITKKDFEALNKEREELEEIPFANARNAASGGLRQLDSAESKKRRLKFFAYQIANYKDFD 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +Y+ ++ + LGF GV ++ Y +++ RS + Y+IDGLV KVD+ Sbjct: 233 LTNEYKSMEFLSDLGF-TVEGVHPNIDAKKVLETYYDIQEKRSKMDYEIDGLVIKVDDVK 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG +R+PR+ ++ KF ++ T L +I++Q+GRTG LTPVA+LEPV +GG ++N Sbjct: 292 YQEKLGFLSRAPRFAVAFKFKPEEKETVLKNIEVQVGRTGALTPVAKLEPVQVGGVTVSN 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 TLHN + IK +DIR+GD V+V R+G+VIPK+ +++ +R D++PF F Sbjct: 352 VTLHNPNEIKS-----------KDIRIGDTVVVIRSGDVIPKITRVVLEKRPEDSKPFEF 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C RC C ++ +++FVS+ A N+E +GK+ Sbjct: 401 PKKCPVCGGDTAVTDG------DVIVRCIN-EECPSKITRYIEYFVSKPAMNMERIGKEW 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F KS ++ PAD++ + R GD + + +SI +N +L Sbjct: 454 IAVFTKS----GLVKTPADLYKITRDDLFKF------ERMGDKLASYMLESIENSKNTTL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +RFI++LGIR VG A LAKY+ S +NF + L + +G+I A+ Sbjct: 504 KRFIYALGIRQVGETTADLLAKYFTSIENFKKA----------AIEDLQNIEGIGEISAK 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +I +F N R + ++ LL + V S + K +V TG+++ R A+E Sbjct: 554 SIYDFLHNERTLKLIDDLLAAGVNPVFEKVVTVESPLTGKNVVITGSIEGFTRTSAKEAA 613 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +LGA V + +S+ TDI+IVG+ GSKL+KAQ LG+ IM ++F+ L Sbjct: 614 ERLGAAVQSAVSKNTDILIVGEKAGSKLKKAQDLGIAIMEADEFIKL 660 >gi|73748436|ref|YP_307675.1| DNA ligase, NAD-dependent [Dehalococcoides sp. CBDB1] gi|123759761|sp|Q3ZX08|DNLJ_DEHSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|73660152|emb|CAI82759.1| DNA ligase, NAD-dependent [Dehalococcoides sp. CBDB1] Length = 677 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 242/714 (33%), Positives = 375/714 (52%), Gaps = 57/714 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E+ +L +EI+ H+ YY P I D++YD L RR + A P+L P+ P K+G Sbjct: 7 EVENLRREINRHNQLYYVQDNPEISDAQYDTLIRRLKELEEAHPELV---TPDSPTQKVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 E + V H P LSL ++ +L + R+ + + S EPK+DG + Sbjct: 64 AEPLKAFGIVNHPYPLLSLANAFSDTELEAWYQRVKKLLG---NISFQIDCEPKMDGLAV 120 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 + Y GKF A RGDG GE+++ +R I +IP N P + EVRGEVY+SKN F Sbjct: 121 ALTYRNGKFATGATRGDGFQGENITRNLRTIHSIPLNAEPNAPPVFEVRGEVYLSKNGFA 180 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYEM 257 LN E G +ANPRNAA+G LR+L+P+ R L+ F++ LG + + + +++ Sbjct: 181 KLNRERADKGLPLFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYSEDSLLPDSHWQI 240 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L +GF +N R NT YY +M + R++LPY+ DG+V+KVD SLQ +LG+ Sbjct: 241 LDYFSKIGFRINPLNRLVNTMEEAKEYYRQMAANRASLPYEADGVVFKVDSVSLQHRLGD 300 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 R PRW I++KF +Q TRL I I +GRTG L P A LEPVN+GG ++ A LHNED Sbjct: 301 VGREPRWAIAYKFPAEQVMTRLKKIGISVGRTGTLNPFAVLEPVNVGGVVVKQAALHNED 360 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF---- 433 I +DIR GD V+++RAGEVIP+VV ++++R+P+++PF Sbjct: 361 DI-----------LRKDIREGDTVIIQRAGEVIPEVVAPVLSKRNPESKPFRMEESLFNP 409 Query: 434 ------CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 CP+C + R A ++C AQ +L+HFVSR A +I G+G Sbjct: 410 NLNRPACPVCGGEIYRPAGE-------AMHYCTNVSCPAQFERQLEHFVSRGAMDIRGIG 462 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + + ++ +D++ L +T + + G+ S N+ D+I + Sbjct: 463 ESLSVILAQQ----GLVKNVSDLYYL------TTADLLQLPRMGEKSADNIIDAIADSKT 512 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 L+R IF LG+RHVG E A L+++Y + A+ L +P +GD Sbjct: 513 RPLDRVIFGLGVRHVGNETATLLSRHYGNIWALAKTGLG----------ELQTIPDIGDK 562 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 IA +IV ++ +N+ + L + + + N + + V TG L+ R +A Sbjct: 563 IASSIVAYFSEEKNVAVIRRLEEAGVRLTSDQKPVNKNMPFSGMEFVVTGKLESFSREEA 622 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 QE + LG +++ T ++VG + GSKL KA+ +GVK ++E +F+ +L+Q Sbjct: 623 QEKIRSLGGTAKDNVTKATSYLVVGADAGSKLAKARSMGVKELSEREFINMLEQ 676 >gi|229496499|ref|ZP_04390213.1| DNA ligase, NAD-dependent [Porphyromonas endodontalis ATCC 35406] gi|229316396|gb|EEN82315.1| DNA ligase, NAD-dependent [Porphyromonas endodontalis ATCC 35406] Length = 671 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 212/709 (29%), Positives = 353/709 (49%), Gaps = 52/709 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 + + L EI H+ YY S P+I D E+D L ++ + P+L P P Sbjct: 4 VEERIEQLRSEIEQHNYRYYVLSTPLISDVEFDRLMQQLIDLEAQHPELI---TPTSPTQ 60 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G + N S V HS+P LSL +N +++R+F R++ + S+ E K DG Sbjct: 61 RVGSDRNPSFVSVRHSVPMLSLSNTYNYDEVREFWHRLH-----SGNGSLTLDCELKFDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISK 195 I + Y G+ A RGDG G+DV+ IR I +IP L P +EVRGE+ + Sbjct: 116 LSIAVVYLNGELSQAITRGDGIEGDDVTNNIRTIRSIPLRLLGENIPPRVEVRGEILLPY 175 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 ++F +N + +A G+ P+ANPRNAASG L++L+ + ++ + + Sbjct: 176 DEFERINSQRLAEGKDPFANPRNAASGTLKQLDTSVVSERRLDAFFYYLLVNGLDIDSHA 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L + G V++ Q +T I ++ + + R +LP+ DG+V KVD +LQ+ + Sbjct: 236 ERLHLAKSWGIKVSDYSAQCSTLEDIYAFIDHWDTARRSLPFATDGIVLKVDSLALQQTI 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+ PRW I++K+ ++AST+L+D+ Q+GRTGI+TPVA L P+ I G ++ ATLHN Sbjct: 296 GFTAKGPRWAIAYKYQPERASTQLIDVSYQVGRTGIITPVANLAPILISGTVVRRATLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D+I L D+ D V V++ GE+IPK+ + + R DA P FPS CP Sbjct: 356 ADFILSL-----------DLHQKDYVYVEKGGEIIPKIAGVDKSLRQSDALPIVFPSTCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + +++ + C L C Q ++H+ R A +I + Sbjct: 405 DCGTTLIKAEGE------VGYFCPNKLGCPMQIKGSIEHYTQRKAADITIGPET-----I 453 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + ++ D++ L S + GF + + NL SI + ++ +F Sbjct: 454 DALYSRGFVKSICDLYRLTADDILS------LDGFKECATGNLLGSIEQSKSRPFPAILF 507 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIR+VG +A+ L + + S + + L + +G+ IA++IV F Sbjct: 508 GLGIRYVGENVAKILTRTFNSIETLMEASQ----------EELQTIDGIGERIAESIVSF 557 Query: 616 YQNPRNICAVEALLKEVS----PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 + + RN + AL + P + +S +E K +V +GT + R + + + Sbjct: 558 FADERNQKIIAALKEFGVTLSNPVEEGISEAISRPLEGKSIVISGTFSQHTRDEYTQIIE 617 Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 QLG + +S+KT I+ G++ G SK EKA LG+ +++E++FL L+ Sbjct: 618 QLGGKKVSSISQKTSFILAGEDMGPSKREKALSLGIPLLSEDEFLALVD 666 >gi|254976908|ref|ZP_05273380.1| DNA ligase [Clostridium difficile QCD-66c26] gi|255308381|ref|ZP_05352552.1| DNA ligase [Clostridium difficile ATCC 43255] gi|255316048|ref|ZP_05357631.1| DNA ligase [Clostridium difficile QCD-76w55] gi|255518705|ref|ZP_05386381.1| DNA ligase [Clostridium difficile QCD-97b34] gi|255651827|ref|ZP_05398729.1| DNA ligase [Clostridium difficile QCD-37x79] gi|306521614|ref|ZP_07407961.1| DNA ligase [Clostridium difficile QCD-32g58] Length = 674 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 224/707 (31%), Positives = 373/707 (52%), Gaps = 50/707 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + E++ L + I+YH++ YY P I D EYD L + ++ P+L R + P Sbjct: 2 SVKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRI---DSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 N++GG+ ++ H P LSL ++ +DLR F R+ + + ++ + +E KID Sbjct: 59 NRVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVEFKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y G+F A RGDG GED+S + + +IP L +N + + VRGEVYISK Sbjct: 115 GLSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 ++F +N++ + +ANPRN A+G LR+L+P R L+ FV + E + Sbjct: 173 DNFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEEYDLESH 232 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L+ + LGF V+ + + ++ + R L Y+IDG+V KV+ + + Sbjct: 233 SESLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLDYEIDGMVIKVNNIKQRDE 292 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 +G A+SPRW I++KF ++ T+++DI +++GRTG +TP A LEPV + G ++ ATLH Sbjct: 293 MGYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLH 352 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NEDYI+ +DI++ D VLV++AG++IP+V+++I ER D F P C Sbjct: 353 NEDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKC 401 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C +R AA +C +C AQ + HFVSRDA NI+GLG+ + Sbjct: 402 PVCSEPTIRLEGE------AAVKCINM-SCPAQIRRGIIHFVSRDAMNIDGLGESIITLL 454 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + I+ +D++ +++ + G+ S NL +SI K + L R I Sbjct: 455 LNEK----IIQDVSDLYYIKKEDVVD------LERMGEKSADNLINSIEKSKENDLWRLI 504 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 LGI+ +G + A+ LA + + L + G I+A ++VE Sbjct: 505 NGLGIKFIGVKAAKILAYNFKDLDEVISATS----------EQLEELEEFGSIMANSVVE 554 Query: 615 FYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F++ +N+ + L S+ + V E K+V TGTL ++R+ A++ + + Sbjct: 555 FFKEDKNMNVINKLKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKDMIEK 614 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G ++ +S+ T ++ G+ GSKL KA LG+K+++EE+FL LL+ Sbjct: 615 RGGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEERFLELLK 661 >gi|319789848|ref|YP_004151481.1| DNA ligase, NAD-dependent [Thermovibrio ammonificans HB-1] gi|317114350|gb|ADU96840.1| DNA ligase, NAD-dependent [Thermovibrio ammonificans HB-1] Length = 723 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 231/729 (31%), Positives = 378/729 (51%), Gaps = 57/729 (7%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 + + LS E+AR+ L + I YHD YY + P+I D +YD L +A+ A P Sbjct: 24 KTEEDFKKLSTEEARELAEKLRRVIRYHDYKYYVQANPVISDYQYDKLFHALEALEKAHP 83 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 ++ P+ P +I KV H SLE ++ EDL+++ ++ Sbjct: 84 EVV---TPDSPTQRISPAFTGEFQKVKHYAEMTSLENTYSPEDLKEWDRKVKELLG---T 137 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP--RVLSLNI 181 +++ + +EPK DG + + Y+ V A RGDG GED++ IR I +IP S + Sbjct: 138 DTVEYIVEPKFDGASVELVYKNDILVRGATRGDGIYGEDITVNIRTIKSIPLKAPFSKHG 197 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-----YL 236 E+I +RGEV + K+ F LN+E G +ANPRNAA+G LR NP ++ + Y+ Sbjct: 198 IELISIRGEVIMPKSVFKKLNEEREKQGLTLFANPRNAAAGTLRLKNPAEVAKRGLDCYV 257 Query: 237 NFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296 ++ K + Q E L+ + GF + ++ + R T Sbjct: 258 YQILYSEPKKLCTDIRTQKEALKLLAECGFKTPPIQKVCKNIEEVIETVLAAQEERETWD 317 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 ++ DG+V KV++ ++LGE PRW +++KF KQA T+L+D+ Q+GRTG LTPVA Sbjct: 318 FEADGMVIKVNDICAWEKLGETLHHPRWAVAYKFPAKQAVTKLIDVVWQVGRTGALTPVA 377 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 LEPV +GG +++ ATL N D+IK +DIR+GD V+V+RAGE IP +V Sbjct: 378 ILEPVEVGGVIVSRATLFNPDFIKS-----------KDIRIGDYVIVERAGETIPYIVGP 426 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 + + R D +P P CP+C + +V++L+ A RC + C AQ E L ++ Sbjct: 427 VKDRRKGDEKPVEVPKHCPVCGAPIVKELDE------AVPRC-PNINCPAQLKEHLVYWG 479 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 +I+GLG+ + K ++ AD++ L+R + G+G Sbjct: 480 --KVLDIKGLGESTANVLTKK----GLVKSIADLYYLKREDL------LKLSGWGLKKSE 527 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 NL + I K ++ + + +LGIRHVG + A+ LAK + + + D+ Sbjct: 528 NLLNQIEKSKSAPFWKKLTALGIRHVGEKTAQLLAKRFKNIEELMNA----------DFT 577 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI----GRHEKNVSSEIENKKL 652 L +P +G I A +I F++ +N+ ++ L + E+ + +E +++ Sbjct: 578 ELASIPGIGPITATSIQNFFKAEQNVEMIKKLQEAGFKFERTQEEEQEEKLPKPLEGQRI 637 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 VFTG L+ R +AQ V LGA + +++KT ++VG+NPGSK +KAQ+LG+K++NE+ Sbjct: 638 VFTGELEHFTRKEAQHVVELLGANPTNSVTKKTSFVVVGENPGSKFQKAQKLGIKMLNEK 697 Query: 713 QFLFLLQQY 721 +F+ LL++Y Sbjct: 698 EFIELLKRY 706 >gi|260175035|ref|ZP_05761447.1| DNA ligase [Bacteroides sp. D2] gi|315923266|ref|ZP_07919506.1| DNA ligase [Bacteroides sp. D2] gi|313697141|gb|EFS33976.1| DNA ligase [Bacteroides sp. D2] Length = 666 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 227/709 (32%), Positives = 356/709 (50%), Gaps = 51/709 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 ++++ L E+ H+ YY + P I D E+D R + A P+ D N P Sbjct: 2 DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEYK---DENSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G ++N + +V H P LSL ++ ++ F R+ + + E K D Sbjct: 59 MRVGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRVRKAL----NEDFEICCEMKYD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194 GT I++ YE GK V A RGDG G+DV+ ++ I +IP VL N P E+RGE+ + Sbjct: 115 GTSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 F LN E A +ANPRNAASG L+ N + + + G Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYLLGDNLPCDGH 234 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 YE LQ+ GF +++ R+ T + + N R LP DG+V KV+ QK Sbjct: 235 YENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKN 294 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LH Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLH 354 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER-HPDAQPFSFPSF 433 N D I+GL D+ +GD V V++ GE+IPK+ + + R + F Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFIVN 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S++VR AAH C AC Q +++HF+SR A NI+GLG + +D Sbjct: 404 CPECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDM 457 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F++ I+ AD++ L + G+ S N+ I + + + ER Sbjct: 458 FYR----LRLIKNTADLYKLTADDIKG------LDRMGEKSAENIITGIAQSKTVPFERV 507 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGIR VG +A+ +AK + + + Q D L+ + +G+ IAQ+I+ Sbjct: 508 IFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIAQSIL 557 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYV 670 ++ N N V L KE + R E+++S ++ + +V +G R + +E + Sbjct: 558 AYFANESNRELVAKL-KEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFVHHSRDEYKELI 616 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G +S KT I+ GDN G +KLEKA++LG+ I++E++FL L+ Sbjct: 617 EKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665 >gi|256826919|ref|YP_003150878.1| DNA ligase, NAD-dependent [Cryptobacterium curtum DSM 15641] gi|256583062|gb|ACU94196.1| DNA ligase, NAD-dependent [Cryptobacterium curtum DSM 15641] Length = 725 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 239/719 (33%), Positives = 373/719 (51%), Gaps = 47/719 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + + +L +EI ++ YY P I D+ +D+L R + P+ DP Sbjct: 11 DQDDVGARIEALRREIEHNSWLYYAQDAPAISDAAFDSLMRELRQLEAEHPEF---YDPT 67 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GG + VTH+ SL+ ++++L ++ R + + E Sbjct: 68 SPTQRVGGYVGEQFAAVTHAERMYSLDNAMDLDELDAWMDRTFEALG----TDVPLCCEL 123 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-------LNIPEII 185 KIDG+ I + YE G+ + AA RGDG GEDV+A IR + +P L ++ E + Sbjct: 124 KIDGSGIAVTYEDGRLMRAATRGDGVVGEDVTANIRTVRDVPLRLRAEALDALTDVEEAL 183 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 E+RGEVY+ K F ALN GR+ +ANPRNAA+G LR+ +PT R L+ F + Sbjct: 184 ELRGEVYMPKKSFNALNAAADREGRQEFANPRNAAAGSLRQKDPTITAQRDLSTFTYATA 243 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + + GQ+E+L+ MR GF VN VR ++ + ++ E R +LPY+IDG+V Sbjct: 244 SNAALTLPGQWELLEWMRNAGFHVNPDVRLCHSRDEVRAFCKEALDKRQSLPYEIDGVVV 303 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++FSLQ +LG AR+PRW I+ KF ++ +T L DI +Q+GRTG LTPVA LEPV++ Sbjct: 304 KVNDFSLQDRLGFTARAPRWAIAFKFPPEEKTTLLRDITVQVGRTGALTPVAELEPVSVS 363 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G++++ ATLHNED ++ +D+RVGD V+V++AG+VIP+V+ +++ R D Sbjct: 364 GSVVSRATLHNEDEVRR-----------KDVRVGDTVIVRKAGDVIPEVLGPVLSLRPAD 412 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 AQP+ P+ CP C S VVR+ A RC L C AQ ERL H+ SR A +IE Sbjct: 413 AQPWHAPTSCPSCGSPVVREEG------GAILRCVS-LDCPAQAHERLIHWASRGALDIE 465 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPA-DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 G+G++ + +S + L K + G + I+ Sbjct: 466 GMGEEVIGRLLESGRVVDVADYYHLTEYDLATLDMGRVNKDGEAIHLGSTVAAKIVGQID 525 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + ++ R +F LGIRHVG A ++A+ Y S + + L + Sbjct: 526 QSKHRGFARVLFGLGIRHVGKTTAEAIAQAYPSIEALREA----------KMDDLAAIEG 575 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTL--QK 660 +G IIA+++ F + P+N+ ++ LL + V TG+L Sbjct: 576 IGPIIAESLFVFLRTPQNVQVIDRLLAAGVVMEEAALTPRAPQTLSGLTFVLTGSLVQSG 635 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R +A + + +GA VS +S KT +I G+ GSK +KA LGV +++E FL +L+ Sbjct: 636 MTRTEAGDALKAMGAKVSGSVSGKTSFVIAGEAAGSKRDKAVSLGVPVIDEAAFLHILE 694 >gi|225620892|ref|YP_002722150.1| NAD-dependent DNA ligase LigA [Brachyspira hyodysenteriae WA1] gi|254781267|sp|C0QVE5|DNLJ_BRAHW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|225215712|gb|ACN84446.1| NAD-dependent DNA ligase LigA [Brachyspira hyodysenteriae WA1] Length = 663 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 238/707 (33%), Positives = 385/707 (54%), Gaps = 48/707 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++IE+A++ + L + I+YH+ YY P I D EYD L R + + FP+L + Sbjct: 1 MNIEEAKQRIEQLTETINYHNKLYYTDDNPEIEDYEYDKLFRELENLEREFPELKKD--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P NK+GG + K H I SL + N E+ +F R+ + + + I +T+E Sbjct: 58 DSPTNKVGGTILEKFEKFEHPIAMYSLSNVMNEEEFLEFDNRMQKELNQ---SKIKYTVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG + + YEKGK A+ RGDG GE+V+ ++ + +P+ + + + VRGE Sbjct: 115 NKFDGLALELIYEKGKLTVASTRGDGQVGENVTNNVKMMSNVPKSIKE--KKKLIVRGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 I+K DF ALN E + P+AN RNAASG LR+L+ + R L FF + + + Sbjct: 173 LITKKDFEALNKEREELEEIPFANARNAASGGLRQLDSAESKKRRLKFFAYQIANYKDFD 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +Y+ ++ + LGF GV ++ Y +++ RS + Y+IDGLV KVD+ Sbjct: 233 LTNEYKSMEFLSELGF-TVEGVHPNIDAKKVLETYYDIQEKRSKMDYEIDGLVIKVDDVK 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG +R+PR+ ++ KF ++ T L +I++Q+GRTG LTPVA+LEPV +GG ++N Sbjct: 292 HQEKLGFLSRAPRFAVAFKFKPEEKETVLKNIEVQVGRTGALTPVAKLEPVQVGGVTVSN 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 TLHN + IK +DIR+GD V+V R+G+VIPK+ +++ +R D++PF F Sbjct: 352 VTLHNPNEIKS-----------KDIRIGDTVVVIRSGDVIPKITRVVLEKRTADSKPFEF 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C RC C ++ +++FVS+ A N+E +GK+ Sbjct: 401 PKKCPVCGGDTAVTDG------DVIVRCIN-EECPSKITRYIEYFVSKPAMNMERIGKEW 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F KS ++ PAD++ + R G+ + +SI +N +L Sbjct: 454 IAVFTKS----GLVKTPADLYKITRDDLFKF------ERMGEKLAGYMLESIENSKNTTL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +RFI++LGIR VG A LAKY+ S +NF + L + +G+I A+ Sbjct: 504 KRFIYALGIRQVGETTADLLAKYFTSIENFKKAT----------IDDLQNIEGIGEISAK 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +I +F N + + ++ LL + V S + K +V TG+++ R+ A+E Sbjct: 554 SIYDFLHNEKTLKLIDDLLASGVNPVFEKVVTVESPLTGKNVVITGSIEGFTRNSAKEAA 613 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +LGA V + +S+ T+I+IVG+ GSKL+KAQ LGV+IM ++F+ L Sbjct: 614 ERLGATVQSAVSKNTNILIVGEKAGSKLKKAQDLGVEIMEADEFIKL 660 >gi|301299742|ref|ZP_07205992.1| DNA ligase (NAD(+)) [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852673|gb|EFK80307.1| DNA ligase (NAD(+)) [Lactobacillus salivarius ACS-116-V-Col5a] Length = 672 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 240/719 (33%), Positives = 396/719 (55%), Gaps = 55/719 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + EL L +++ + YY P + DS YD +R + A PDL + Sbjct: 1 MSQKDIEMELKELRDKLNRWSNEYYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ KV+H IP LSL +++ E+L +F+ R+ ++K + ++ E Sbjct: 58 DSPSQRVGGKVLSGFTKVSHDIPMLSLGDVFSKEELIEFLERLENSVEQK----LDYSCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++ YE GKF+ + RG+G GED++ ++ I IP L+ + IEVRGE Sbjct: 114 LKIDGLAISLTYENGKFIKGSTRGNGVIGEDITENLKTIKAIPMELNEPVS--IEVRGEC 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN + A G+ +ANPRNAA+G LR+L+ +R L+ F++ L + ++ Sbjct: 172 YMPKKSFVELNTKREAEGQAVFANPRNAAAGSLRQLDTKITASRNLSTFIYYLMEPEKLG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K Q E L K+ GF VNN +Q T I +Y +E R+ LPYDIDG+V K + F+ Sbjct: 232 IKTQTEALDKLESWGFKVNNESKQVKTKEEIFAYIDEATDQRANLPYDIDGIVLKAESFA 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q Q+G + PRW I++KF + T++LDI+ +GRTG++TP A +EPV + G + Sbjct: 292 VQSQVGNTVKVPRWAIAYKFPPDEQETKVLDIEWTVGRTGVVTPTAVMEPVTLAGTTVAR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN DY+K +DIR+GD V + +AG++IP++ ++++ +R D+ + Sbjct: 352 ASLHNPDYLK-----------EKDIRIGDTVKLHKAGDIIPEISEVVLAKRPEDSVEYQI 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C +++V + A RC C A E L HF SR+A +I GLG + Sbjct: 401 PTECPECGAKLVHLDDE------VALRCINPQ-CPALVKESLTHFTSRNAMDIRGLGPRI 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + E I+ A I++L Q + + F + S NL +I+ RN S+ Sbjct: 454 IEQLYNRE----MIKDVAGIYSLTFEQLIT------LDKFKEKSANNLLTAIDNSRNNSI 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER IF LGIRHVGA++AR LA+ Y S N A+ + + +G+II Sbjct: 504 ERLIFGLGIRHVGAKVARILAENYKSMDNLAKA----------KSDEISTIDSLGEIIGD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSI-------GRHEKNVSSEIENKKLVFTGTLQKIQR 663 ++ ++ + + ++ L + + E + S ++V TGTL ++R Sbjct: 554 SVEMYFADEHVMELLDELRQAGVNMEFLGQTREEQLESSTDSSFNGLRVVLTGTLDTLKR 613 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 +A+ ++ GA V+ +S+KTD++I G + GSKL KAQ+L V++MNE +F+ +++ + Sbjct: 614 SEAKSWLEAHGAKVTGSVSKKTDLLIAGHDAGSKLTKAQELNVRVMNEAEFIQQMEEES 672 >gi|224476961|ref|YP_002634567.1| DNA ligase [Staphylococcus carnosus subsp. carnosus TM300] gi|254781419|sp|B9DMU3|DNLJ_STACT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|222421568|emb|CAL28382.1| DNA ligase [Staphylococcus carnosus subsp. carnosus TM300] Length = 668 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 229/708 (32%), Positives = 373/708 (52%), Gaps = 53/708 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + + L ++ + YY P + DSEYD L R I +A P+ + Sbjct: 1 MAELATRVQELHHLLNKYSHEYYVQDNPSVPDSEYDKLLRELIDIENAHPEYK---TEDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE + KV H P LSL +N E+LR+F R+ K + + E K Sbjct: 58 PTVRVGGEAQATFNKVRHDTPMLSLGNAFNEEELRRFDARVREKAGK-----VEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++YE G+FV RGDG GED++A +R I IP L +N P EVRGE Y+ Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTIGEDITANLRTIRAIP--LRINKPLTFEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 K F LN + G + +ANPRNAA+G LR+L+ R L+ F++ + + A+ Sbjct: 171 PKKSFEHLNQQKEEAGEQAFANPRNAAAGSLRQLDSKLAAKRRLSIFLYSVNDFTNFHAE 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L ++ LGF N ++ + G++ Y + R LPYDIDG+V KV++ Q Sbjct: 231 SQSEALDELDELGFKTNQNRKRVSDIDGVLEYIKYWTAHREELPYDIDGIVIKVNDLEEQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 EELGYTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAVLEPVRVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I +DIR+GD V++K+AG++IP+V+ + + R +P+ P+ Sbjct: 351 LHNEDLIH-----------EKDIRIGDSVVIKKAGDIIPEVIRSLPDRRPEGTEPYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E + HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVRLDGE------VALRCINPK-CPAQLVEGMIHFVSRQAMNIDGLGTKIIM 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 +++E I+ D++ L + + G+ NL ++I + SLE Sbjct: 453 QLYENE----IIKDVGDLYYLTKDDL------LPLERMGEKKADNLLNAIEASKKNSLEH 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ +A+ + + + L+ + +GD +A ++ Sbjct: 503 LLFGLGIRHLGVKASQVIAERFETMDRLFKVTE----------EELLEIHDIGDKLATSL 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 + + N I +E L ++ E SE K +V TG L + R +A + Sbjct: 553 ITYLNNKDIIALIEKLRRKNVNMTYEGIKTSEIQTDSEFNGKTVVLTGKLHNMTRTEASK 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 ++ GA ++ +++ TD++I G++ GSKL KA++LG ++ +E++F+ Sbjct: 613 WLEAQGAKTTSSVTKNTDLVIAGEDAGSKLTKAEKLGTEVWSEDEFIQ 660 >gi|297583057|ref|YP_003698837.1| DNA ligase [Bacillus selenitireducens MLS10] gi|297141514|gb|ADH98271.1| DNA ligase, NAD-dependent [Bacillus selenitireducens MLS10] Length = 668 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 245/712 (34%), Positives = 387/712 (54%), Gaps = 54/712 (7%) Query: 12 LSIEQ-ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 +S Q +K + +L + ++ + YY +P + D+EYD L + + + A P+L RS Sbjct: 1 MSENQDVQKRIDTLTETVNDYAHHYYVLDQPKVPDAEYDRLLQELEELEAAHPELKRS-- 58 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++GGE KV H IP LSL +N E+LR F R+ + +++ Sbjct: 59 -DSPSERVGGEPLDHFRKVQHDIPMLSLSNAFNEEELRDFDRRVRDGLGV----NPTYSV 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG IT++YE G+FV A RGDG +GED++ ++ IP+IP L ++ +EVRGE Sbjct: 114 ELKIDGLAITLKYEAGEFVLGATRGDGTTGEDITRNLKTIPSIPLKLKESV--TLEVRGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEI 249 ++ K F LN+ G +ANPRNAA+G LR+L+P R L+ FV+ +G+ Sbjct: 172 AFMPKASFNRLNEAREEKGEALFANPRNAAAGSLRQLDPKIAAKRNLDMFVYSVGQIEGK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF +N + N +V Y N R L Y+IDG+V KVD Sbjct: 232 TIDSHTETLDYVSKLGFKINPEAKHCNGIEEVVDYVNSWLDRRGDLDYEIDGIVIKVDSL 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q++LG A+SPRW + KF ++ T+L+DI++ IGRTG++TP A LEPV++ G + Sbjct: 292 DHQEELGFTAKSPRWATAFKFPAEEVVTKLIDIELSIGRTGVVTPTAILEPVSVAGTTVQ 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +D+++GDRV +K+AG++IPKVV+++ +R + FS Sbjct: 352 RASLHNEDLIR-----------QQDVKIGDRVTIKKAGDIIPKVVNVLTEQRDGSEEDFS 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C+S +VR A RC C AQ E L HF SRDA NI+GLG++ Sbjct: 401 MPEHCPACESELVRIDGE------VALRCVNP-ECPAQIREGLIHFASRDAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + E +R AD++ L++ + + G+ S TNL ++I ++ S Sbjct: 454 VITQLHSRE----LVRNVADLYRLEKEAIMA------LERMGEKSATNLVEAIEATKSNS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LE+ +F LGIR VG++ A++LA ++ + + D +LI V +GD +A Sbjct: 504 LEKLLFGLGIRFVGSKAAKTLAMHFETMDALMEA----------DKEALIAVDEIGDKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRH 664 +IV ++ P + AL + S + K +V TG++++ R Sbjct: 554 DSIVMAFEQPGMKHLIGALKDLGVNMTYTGPKRITAEESDSPLAGKTVVITGSMEQYSRK 613 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +A+ V G V+ +S+KTD++I G+ GSKL+KA +LG+++ +E +F+ Sbjct: 614 EAKTEVEARGGKVTGTVSKKTDLVIAGEKAGSKLDKANELGIEVWDEARFID 665 >gi|227535466|ref|ZP_03965515.1| DNA ligase (polydeoxyribonucleotide synthase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227186876|gb|EEI66943.1| DNA ligase (polydeoxyribonucleotide synthase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 674 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 235/717 (32%), Positives = 366/717 (51%), Gaps = 51/717 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P ++E+A+ E+ L ++++ YY P + D+ YD R A+ A+P L Sbjct: 5 PAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAYPKLV- 63 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++G +N KV H IP LS+ +++ E+L ++ R+ + + Sbjct: 64 --TPDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARMQSNVG----HPVD 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + +E KIDG +++ YE GK V + RGDG+ GEDV+ + I ++P+ L + +EV Sbjct: 118 YNVELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPKQLKQPLS--LEV 175 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGE Y+ K F LN G P+ANPRNAA+G LR+L+ R L+ F++ L + Sbjct: 176 RGECYMPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEP 235 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + Q+E + M+ LGF N A I +Y + + R LPY IDG+V KV Sbjct: 236 EQFNVTTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKV 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ +LQ QLG + PRW I++KF ++A T + DI +GRTG++TP A ++PV + G Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATLHN D I+ +DIR+GD V++ +AG++IP+V ++V +R D Sbjct: 356 TVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVAKRPADTP 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P P CP C ++V + A RC + C AQ E+L HF SR+A NI+GL Sbjct: 405 PAPIPEACPSCGQKLVHLDDE------VALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + + ++ AD++ L + F + S+ NL +IN R Sbjct: 458 GPKIVAQLQAK----HLVKDVADLYHLTAADL------AKLDKFKEKSINNLLSAINNSR 507 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 S+ER IF LGIRHVG + AR LA+++ + ++ VP +G Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGDLDHLMTASQ----------EAIADVPNIGP 557 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 IA+AIV +++ + L + + S + K +V TG + R Sbjct: 558 TIAEAIVTYFKAATVQKLITQLREADVNLRYTGPTKPVVKDSFVAGKTVVITGKFAEFSR 617 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + LGA V+ +S+KTD++I GD GSKL KAQ L V IMNE + L L+ Sbjct: 618 PALTKQLEGLGAKVTGSVSKKTDLLIAGDAAGSKLAKAQSLNVPIMNETELLANLKD 674 >gi|255102476|ref|ZP_05331453.1| DNA ligase [Clostridium difficile QCD-63q42] Length = 674 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 224/707 (31%), Positives = 373/707 (52%), Gaps = 50/707 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + E++ L + I+YH++ YY P I D EYD L + ++ P+L R + P Sbjct: 2 SIKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRI---DSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 N++GG+ ++ H P LSL ++ +DLR F R+ + + ++ + +E KID Sbjct: 59 NRVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVEFKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y G+F A RGDG GED+S + + +IP L +N + + VRGEVYISK Sbjct: 115 GLSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 ++F +N++ + +ANPRN A+G LR+L+P R L+ FV + E + Sbjct: 173 DNFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEEYDLESH 232 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L+ + LGF V+ + + ++ + R L Y+IDG+V KV+ + + Sbjct: 233 SESLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLDYEIDGMVIKVNNIKQRDE 292 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 +G A+SPRW I++KF ++ T+++DI +++GRTG +TP A LEPV + G ++ ATLH Sbjct: 293 MGYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLH 352 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NEDYI+ +DI++ D VLV++AG++IP+V+++I ER D F P C Sbjct: 353 NEDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKC 401 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C +R AA +C +C AQ + HFVSRDA NI+GLG+ + Sbjct: 402 PVCSEPTIRLEGE------AAVKCINM-SCPAQIRRGIIHFVSRDAMNIDGLGESIITLL 454 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + I+ +D++ +++ + G+ S NL +SI K + L R I Sbjct: 455 LNEK----IIQDVSDLYYIKKEDVVD------LERMGEKSADNLINSIEKSKENDLWRLI 504 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 LGI+ +G + A+ LA + + L + G I+A ++VE Sbjct: 505 NGLGIKFIGVKAAKILAYNFKDLDEVISATS----------EQLEELEEFGSIMANSVVE 554 Query: 615 FYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F++ +N+ + L S+ + V E K+V TGTL ++R+ A++ + + Sbjct: 555 FFKEDKNMNVINKLKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKDMIEK 614 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G ++ +S+ T ++ G+ GSKL KA LG+K+++EE+FL LL+ Sbjct: 615 RGGKATSSVSKSTTFVLAGEEAGSKLTKASDLGIKVIDEERFLELLK 661 >gi|239631844|ref|ZP_04674875.1| NAD-dependent DNA ligase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526309|gb|EEQ65310.1| NAD-dependent DNA ligase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 674 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 235/717 (32%), Positives = 365/717 (50%), Gaps = 51/717 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P ++E+A+ E+ L ++++ YY P + D+ YD R A+ A+P L Sbjct: 5 PAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKLV- 63 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++G +N KV H IP LS+ +++ E+L ++ R+ + + Sbjct: 64 --TPDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARMQSNVG----HPVD 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + +E KIDG +++ YE GK V + RGDG+ GEDV+ + I ++P+ L + +EV Sbjct: 118 YNVELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPKQLKQPLS--LEV 175 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGE Y+ K F LN G P+ANPRNAA+G LR+L+ R L+ F++ L + Sbjct: 176 RGECYMPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEP 235 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 Q+E + M+ LGF N A I +Y + + R LPY IDG+V KV Sbjct: 236 ERFNVTTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKV 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ +LQ QLG + PRW I++KF ++A T + DI +GRTG++TP A ++PV + G Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATLHN D I+ +DIR+GD V++ +AG++IP+V ++V +R D Sbjct: 356 TVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVAKRPADTP 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P P CP C ++V + A RC + C AQ E+L HF SR+A NI+GL Sbjct: 405 PAPIPEVCPSCGQKLVHLDDE------VALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + + ++ AD++ L + F + S+ NL +IN R Sbjct: 458 GPKIVAQLQAK----HLVKDVADLYHLTAADL------AKLDKFKEKSINNLLSAINNSR 507 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 S+ER IF LGIRHVG + AR LA+++ + ++ VP +G Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGDLDHLMTASQ----------EAIADVPNIGP 557 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 IA+AIV +++ + L + + S + K +V TG + R Sbjct: 558 TIAEAIVTYFKAATVQKLITQLREADVNLRYTGPTKPVVKDSFVAGKTVVITGKFAEFSR 617 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + LGA V+ +S+KTD++I GD GSKL KAQ L V IMNE + L L+ Sbjct: 618 PALTKQLEGLGAKVTGSVSKKTDLLIAGDAAGSKLAKAQSLNVPIMNETELLANLKD 674 >gi|255009394|ref|ZP_05281520.1| putative DNA ligase [Bacteroides fragilis 3_1_12] gi|313147153|ref|ZP_07809346.1| DNA ligase [Bacteroides fragilis 3_1_12] gi|313135920|gb|EFR53280.1| DNA ligase [Bacteroides fragilis 3_1_12] Length = 665 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 223/706 (31%), Positives = 348/706 (49%), Gaps = 48/706 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++++ L ++ H+ YY + P I D E+D L R + P+ D N P Sbjct: 3 VKEKIDQLRIQLHQHNYNYYVLNAPEISDKEFDDLMRELQTLEQEHPEYK---DENSPTM 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G ++N + +V H P LSL ++ ++ F R+ + + E K DG Sbjct: 60 RVGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRVRKAL----NEDFEICCEMKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 T I++ YE GK + A RGDG G+DV+ ++ I +IP VL N P++ E+RGE+ + Sbjct: 116 TSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGNNYPDVFEIRGEILMPW 175 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 F LN E A +ANPRNAASG L+ N + + G Y Sbjct: 176 EVFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPTDGHY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ+ GF ++ +R+ T + + N R L DG+V KV+ QK L Sbjct: 236 ENLQEAAKWGFKISPLMRKCQTLQEVFDFINYWNVERKNLNVATDGIVLKVNSLKQQKNL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNTVSYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+GL D+ +GD V V++ GE+IPK+ + V R + F + CP Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDVAARFMIGEKVKFITHCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S+++R AAH C AC Q +++HF+SR A NI+GLG + +D F+ Sbjct: 405 ECGSKLIRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + I AD++ L + + GD S N+ I + + I ER IF Sbjct: 459 R----LDLIHNTADLYQLTTDDIKN------LDRMGDKSAENIIRGIMQSKEIPFERVIF 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG +A+ +AK + D +L+ + +G+ IAQ+I+ + Sbjct: 509 ALGIRFVGETVAKKIAKSFKDIVELENA----------DLETLVSIDEIGEKIAQSILNY 558 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + N N ++ L E ++ + +V +G R + ++ + + Sbjct: 559 FANDSNRKLIDRLKIAGLQLYRPEEDLSEHTDKLAGQSIVISGVFTHHSRDEYKDLIEKH 618 Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G +S KT I+ GDN G +KLEKA +LG+KIMNEE+FL L+ Sbjct: 619 GGKNVGSISAKTSFILAGDNMGPAKLEKANKLGIKIMNEEEFLKLI 664 >gi|86605509|ref|YP_474272.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-3-3Ab] gi|123765626|sp|Q2JW63|DNLJ_SYNJA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|86554051|gb|ABC99009.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-3-3Ab] Length = 673 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 231/700 (33%), Positives = 371/700 (53%), Gaps = 51/700 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + L + YY + PI+ DS YD L R + A+P+L P+ P Sbjct: 4 KLEQRARELRALLQKASIAYYVHDAPILEDSVYDRLYRELQELERAYPELI---TPDSPT 60 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK-KDDNSIFFTLEPKI 134 ++G + V+H IP SLE +N+E+L+++ R++R + ++ + + E KI Sbjct: 61 QRVGEKPAEQFPTVSHRIPLYSLENAFNLEELKEWQERLWRVLGRTPEEGELEYVCELKI 120 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYI 193 DG + + Y G A RGDG SGED++ IRAIP+IP + P ++EVRGE Y+ Sbjct: 121 DGAALALTYVDGLLQRGATRGDGQSGEDITPNIRAIPSIPLRLATAAPPPVLEVRGEAYL 180 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL----GKTSE 248 +F +N E + G P+ANPRN A+G LR+L+ R L+FF + L G S Sbjct: 181 PIAEFERINRERCSAGDPPFANPRNCAAGTLRQLDSRVVAARKLSFFAYALHWPEGWPSG 240 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + Q+E LQ+++ LG PVN + +V +Y + + PY DG+V K++ Sbjct: 241 DPPQTQWECLQRLKDLGLPVNPLSQVCRGLEEVVQFYERWRQAQL--PYACDGVVVKLNS 298 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 LQ++ G + PRW I+ K+ ++ TR+ I +GRTG +TPVA LEPV + G + Sbjct: 299 LRLQEEAGFTQKFPRWAIALKYPAQEVPTRIRAIVASVGRTGAVTPVAELEPVLLAGTTV 358 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN D ++ L D+ +GD +V++AGE+IP+VV I+ R PDA P+ Sbjct: 359 SRASLHNADRLEEL-----------DVHIGDTAIVRKAGEIIPEVVGILKELRPPDAVPY 407 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 PS CP C + +VR A RC AC A+ +L+H+ SRDA +IEGLG+ Sbjct: 408 RLPSHCPECGTLLVRPAGE------AITRCPNP-ACPAKIRGQLQHWASRDAMDIEGLGE 460 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 +++ + +R AD++ L +E++ G G S L +I + R Sbjct: 461 KRVAQLVEK----LGVRTVADLYRLTPE------HLESLEGMGSRSSQKLVQAIQRSRQQ 510 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 ER ++ LGI HVG A+ LA+++ + + AQ + ++ +G I Sbjct: 511 PWERVLYGLGIPHVGVVTAQILAQHFPAPELLAQAR----------AEDIAQIYGIGAEI 560 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-NVSSEIENKKLVFTGTLQKIQRHKAQ 667 A+A+V ++ +P + ++ L + P++ R VS + KK V TGTL + R +A+ Sbjct: 561 AEAVVAWFADPAHQKLLQELRELGIPALPRQAAPAVSQVLAGKKFVITGTLPTLSRQQAK 620 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 ++ G V+A +SR+TD ++VG +PGSKL++AQ LG+ Sbjct: 621 AWIESRGGKVTASVSRQTDYVVVGSDPGSKLKQAQALGIP 660 >gi|315641089|ref|ZP_07896168.1| NAD-dependent DNA ligase LigA [Enterococcus italicus DSM 15952] gi|315483097|gb|EFU73614.1| NAD-dependent DNA ligase LigA [Enterococcus italicus DSM 15952] Length = 671 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 221/712 (31%), Positives = 370/712 (51%), Gaps = 53/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + +++ L+++++ + YY +P++ D+ YD L ++ A+ A P+ + + Sbjct: 2 KQTVAEQIHDLQKKLTEYAYAYYVKDQPVVDDAYYDQLYQQLVALETAHPEY---QTSDS 58 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + KV H IP SL +++ ++ F R+ + +++ + E K Sbjct: 59 PTQRVGGVVRKGFEKVVHEIPLYSLNDVFSKAEIIAFDQRVQKTLG----HAVSYICELK 114 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I+++YE G+ V A RGDG GE+++ + + +IP L+ I IEVRGE Y+ Sbjct: 115 IDGLSISLKYENGRLVRGATRGDGTIGENITDNSKTVKSIPLTLTEPI--DIEVRGECYM 172 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 K F+ LN + G +ANPRNAA+G +R+L+ +R L+ F++ L + Sbjct: 173 PKASFIQLNQKREEEGLDIFANPRNAAAGSIRQLDSKVTASRNLSTFLYTLADFGPLHVT 232 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L + LGF N +T + +Y RS LPY+IDG+V KV++FS Q Sbjct: 233 NQAEALTHLDDLGFRTNQERAVCSTIDDVWAYIESFHDKRSQLPYEIDGVVIKVNDFSDQ 292 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 QLG ++PRW +++KF ++A T + +I+ +GRTG++TP A + PV + G + A+ Sbjct: 293 NQLGFTVKAPRWAVAYKFPPEEAQTTIEEIEWTVGRTGVVTPTAVMTPVRVAGTTVARAS 352 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN DYIK +DIR+ D+V++ +AG++IP+V +I R +QP++ P+ Sbjct: 353 LHNADYIKM-----------KDIRLHDQVVIYKAGDIIPEVAHVIEEARDSASQPYTIPT 401 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S +V A RC C A E + HFVSRDA NIEG+G + ++ Sbjct: 402 NCPVCGSELVHLDEE------VALRCINPK-CPALLKEGISHFVSRDAMNIEGIGPRMIE 454 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 FF + AD++ L Q + I + S TN+ +I + SLE+ Sbjct: 455 QFFNH----GFVEDVADLYRLTLDQLLT------IDKVKEKSATNMLQAIEASKQNSLEK 504 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRHVG + A+ LA+ + + +Q ++ V +G IA ++ Sbjct: 505 LLFGLGIRHVGVKAAKLLAERFETLTQLSQAT----------VEEILTVATIGPTIADSL 554 Query: 613 VEFYQNPRNICAVEALLKEVSPS-----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 V ++ N + L + + S + K +V TG LQ R +A+ Sbjct: 555 VTYFANEEVHELMTELKAAGVNETYLGLKSQDVAEIESAFQGKTVVLTGKLQTYTRDQAK 614 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + +LG ++ +S+KTD++I G + GSKL KAQ L + + EE+ + L+ Sbjct: 615 KRIEELGGTITGSVSKKTDLVIAGADAGSKLTKAQALDIPVWTEEEMIAALE 666 >gi|307297347|ref|ZP_07577153.1| DNA ligase, NAD-dependent [Thermotogales bacterium mesG1.Ag.4.2] gi|306916607|gb|EFN46989.1| DNA ligase, NAD-dependent [Thermotogales bacterium mesG1.Ag.4.2] Length = 665 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 234/709 (33%), Positives = 378/709 (53%), Gaps = 47/709 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E+ARK + L +EI YH YY P I DSEYD L R + +P+L P Sbjct: 2 ITFEEARKRIDELRKEIDYHAYRYYVLDDPEIPDSEYDNLLRTLIDLEEQYPELK---TP 58 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G + S +V H SL+ ++ E++ +F R+ Q + + + E Sbjct: 59 DSPSIRVGLKPVASFKEVVHEYRLFSLDNTYSEEEVLQFDRRVREELQIEI---VRYMCE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I+++Y+ G V A RG+G GEDV+ IRAI +IP L ++ +EVRGEV Sbjct: 116 LKIDGLSISVKYDNGLLVRGATRGNGFVGEDVTENIRAIKSIPLRLRQDLS--VEVRGEV 173 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 Y+ K+ F +N + +ANPRNAA+G LR+L+P + R LN F + + + S++ Sbjct: 174 YLPKDVFYEINRARSKGELQVFANPRNAAAGTLRQLDPREVAKRRLNAFFYHVVEPSKLQ 233 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K Q E LQ ++ +G V A G+++++ + +S+L Y +DG V KVD+ Sbjct: 234 LKSQNEQLQFLKSIGMRVEPNSELAEGTDGVIAFWKKWSESKSSLNYAVDGTVVKVDDLY 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG ++PRW I+ KF +QA T+L+ + +GRTG +TPVA LEPV + G + Sbjct: 294 AQEELGYTTKAPRWAIAFKFPAEQAMTKLIKVTFGVGRTGTITPVAELEPVQLAGTTVKR 353 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A++HN D+I +DIR+ D V+V++AGE+IP++V I +R + + Sbjct: 354 ASMHNFDFI-----------SEKDIRLFDIVIVQKAGEIIPQIVRSIPEKRTGKEKRITP 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C V R+ C L+ R++ F SRDA +IEGLG++ Sbjct: 403 PSRCPVCGGEVGREKEEDVALKCLNPTCPAKLS------RRIQFFCSRDAMDIEGLGEK- 455 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + A ++ P+D++ L + S G G+ + +NL ++I K R+ L Sbjct: 456 ---LVERIVEAGLVKNPSDLYKLNKDDLLSLG-----EGIGEKTASNLIEAIQKSRSNPL 507 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + I LGI VG++ ++ LA Y+ S + D L V +G+ +A+ Sbjct: 508 FKLITGLGIPGVGSKTSKDLANYFGSLRGLVSA----------DEKELRNVSGIGEQLAK 557 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I ++ +P VE LLK V+ S ++ K V TGTL R + QE + Sbjct: 558 DIKRYFSSPEVKKEVEELLKYVNIKDEDSP--GSKPLKGMKFVVTGTLPGYSRKEIQEKI 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +LG V++ +S+ TD +++G+NPGSK +KA+ LG+KI++E F +++ Sbjct: 616 IKLGGEVASSVSKNTDFLLLGENPGSKEQKARDLGIKIIDERDFEEMIK 664 >gi|325956253|ref|YP_004286863.1| DNA ligase [Lactobacillus acidophilus 30SC] gi|325332818|gb|ADZ06726.1| DNA ligase [Lactobacillus acidophilus 30SC] Length = 667 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 208/714 (29%), Positives = 366/714 (51%), Gaps = 50/714 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + +++++A+KE +SL +++ D YY P + D+ YD R + FP++ Sbjct: 1 MAEITLDEAKKEAASLRTQLNEWADAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIV-- 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ ++GG+++ KV H IP LS+ +++ E+L++F R+ + + + + Sbjct: 59 -TPDSITQRVGGQIDNDFTKVEHPIPMLSMGDVFSKEELKEFDQRMQKLVG----HPVEY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ YE GK V A+ RG+G+ GEDV+A I IP+ L + EVR Sbjct: 114 NVELKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAHYIADIPQTLPEPL--TTEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+ K F LN+E G +ANPRNAA+G LR+L+P + Sbjct: 172 GECYMGKEAFAKLNEEREEQGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ +++M LGF N R+ T I + +E + R++L Y IDG+V K+D+ Sbjct: 232 EGITSQHQAIERMHELGFHTNETGRKLATLDEIFDFIDEYTAKRNSLTYGIDGIVLKIDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +++++LG + PRW I++KF ++ T + DI +GRTG++TP A ++PV + G + Sbjct: 292 LNIEQELGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTTV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A+LHN DY+ + +R+GD V + +AG++IP++ ++++ +R D++P+ Sbjct: 352 ARASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVLAKRPADSEPY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C ++V + A RC +C AQ E + HF SR A NI GLG Sbjct: 401 KIPDTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + + AD++ L + F + S+ NL +I+ ++ Sbjct: 454 KIVKQLIAKD----LVHNVADLYHLTADDL------AELDHFKEKSINNLLTAIDNSKSN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E I LGI HVGA+ AR +A+ + + + + +G I Sbjct: 504 SVELLITGLGIDHVGAKAARLIAQKFKNLSKIMA----------QGVQDIASIDTIGMTI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A+++ ++ P +E L + E + ++K +V TG L+ R + Sbjct: 554 AESMTTYFAQPEVQKLIEELRESGLNMDYLGEDEEAAPDNPFKDKTVVLTGKLEHYTRSE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + LGA V+ +S+KT+ +I G + GSK KA+QLG+ ++ EE+ + ++ Sbjct: 614 FTKKLQALGAKVTGSVSKKTNYVIYGKDAGSKYNKAEQLGIPLLTEEEAIAQIE 667 >gi|327183069|gb|AEA31516.1| DNA ligase [Lactobacillus amylovorus GRL 1118] Length = 667 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 208/714 (29%), Positives = 366/714 (51%), Gaps = 50/714 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + +++++A+KE +SL +++ D YY P + D+ YD R + FP++ Sbjct: 1 MAEITLDEAKKEAASLRTQLNEWADAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIV-- 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ ++GG+++ KV H IP LS+ +++ E+L++F R+ + + + + Sbjct: 59 -TPDSITQRVGGQIDNDFTKVEHPIPMLSMGDVFSKEELKEFDQRMQKLVG----HPVEY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ YE GK V A+ RG+G+ GEDV+A I IP+ L + EVR Sbjct: 114 NVELKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAHYIADIPQTLPEPL--TTEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+ K F LN+E G +ANPRNAA+G LR+L+P + Sbjct: 172 GECYMGKEAFAKLNEEREEQGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ +++M LGF N R+ T I + +E + R++L Y IDG+V K+D+ Sbjct: 232 EGITSQHQAIERMHELGFHTNETDRKLATLDEIFDFIDEYTAKRNSLTYGIDGIVLKIDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +++++LG + PRW I++KF ++ T + DI +GRTG++TP A ++PV + G + Sbjct: 292 LNIEQELGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTTV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A+LHN DY+ + +R+GD V + +AG++IP++ ++++ +R D++P+ Sbjct: 352 ARASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVLAKRPADSEPY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C ++V + A RC +C AQ E + HF SR A NI GLG Sbjct: 401 KIPDTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + + AD++ L + F + S+ NL +I+ ++ Sbjct: 454 KIVKQLIAKD----LVHNVADLYHLTADDL------AELDHFKEKSINNLLTAIDNSKSN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E I LGI HVGA+ AR +A+ + + + + +G I Sbjct: 504 SVELLITGLGIDHVGAKAARLIAQKFKNLSKIMA----------QGVQDIASIDTIGMTI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A+++ ++ P +E L + E + ++K +V TG L+ R + Sbjct: 554 AESMTTYFAQPEVQKLIEELRESGLNMDYLGEDEEAAPDNPFKDKTVVLTGKLEHYTRSE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + LGA V+ +S+KT+ +I G + GSK KA+QLG+ ++ EE+ + ++ Sbjct: 614 FTKKLQALGAKVTGSVSKKTNYVIYGKDAGSKYNKAEQLGIPLLTEEEAIAQIE 667 >gi|315037778|ref|YP_004031346.1| DNA ligase [Lactobacillus amylovorus GRL 1112] gi|312275911|gb|ADQ58551.1| DNA ligase [Lactobacillus amylovorus GRL 1112] Length = 667 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 208/714 (29%), Positives = 366/714 (51%), Gaps = 50/714 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + +++++A+KE +SL +++ D YY P + D+ YD R + FP++ Sbjct: 1 MAEITLDEAKKEAASLRTQLNEWADAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIV-- 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ ++GG+++ KV H IP LS+ +++ E+L++F R+ + + + + Sbjct: 59 -TPDSITQRVGGQIDNDFTKVEHPIPMLSMGDVFSKEELKEFDQRMQKLVG----HPVEY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ YE GK V A+ RG+G+ GEDV+A I IP+ L + EVR Sbjct: 114 NVELKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAHYIADIPQTLPEPL--TTEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+ K F LN+E G +ANPRNAA+G LR+L+P + Sbjct: 172 GECYMGKEAFAKLNEEREEQGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ +++M LGF N R+ T I + +E + R++L Y IDG+V K+D+ Sbjct: 232 EGITSQHQAIERMHELGFHTNETGRKLATLDEIFDFIDEYTAKRNSLTYVIDGIVLKIDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +++++LG + PRW I++KF ++ T + DI +GRTG++TP A ++PV + G + Sbjct: 292 LNIEQELGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTTV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A+LHN DY+ + +R+GD V + +AG++IP++ ++++ +R D++P+ Sbjct: 352 ARASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVLAKRPADSEPY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C ++V + A RC +C AQ E + HF SR A NI GLG Sbjct: 401 KIPDTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + + AD++ L + F + S+ NL +I+ ++ Sbjct: 454 KIVKQLIAKD----LVHNVADLYHLTADDL------AELDHFKEKSINNLLTAIDNSKSN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E I LGI HVGA+ AR +A+ + + + + +G I Sbjct: 504 SVELLITGLGIDHVGAKAARLIAQKFKNLSKIMA----------QGVQDIASIDTIGMTI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A+++ ++ P +E L + E + ++K +V TG L+ R + Sbjct: 554 AESMTTYFAQPEVQKLIEELRESGLNMDYLGEDEEAAPDNPFKDKTVVLTGKLEHYTRSE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + LGA V+ +S+KT+ +I G + GSK KA+QLG+ ++ EE+ + ++ Sbjct: 614 FTKKLQALGAKVTGSVSKKTNYVIYGKDAGSKYNKAEQLGIPLLTEEEAIAQIE 667 >gi|229551868|ref|ZP_04440593.1| DNA ligase (NAD(+)) [Lactobacillus rhamnosus LMS2-1] gi|258539286|ref|YP_003173785.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus Lc 705] gi|229314812|gb|EEN80785.1| DNA ligase (NAD(+)) [Lactobacillus rhamnosus LMS2-1] gi|257150962|emb|CAR89934.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus Lc 705] Length = 674 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 243/716 (33%), Positives = 372/716 (51%), Gaps = 51/716 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P ++E+A E++ L ++++ YY P + D+ YD R A+ AFP L Sbjct: 5 PAAQFTLEEAEAEIAKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAFPKLV- 63 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++G +N KV H IP LS+ +++ E+L ++ R+ +++ Sbjct: 64 --TPDSPTQQVGDVINSDFAKVRHPIPMLSMGDVFSFEELSEWDARMQANVG----HAVD 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + +E KIDG +++ YE G+ V + RGDG+ GEDV+ + I ++P +L P +EV Sbjct: 118 YNVELKIDGLALSLIYENGRLVQGSTRGDGNIGEDVTKNVLTIASVP--KTLKRPLSLEV 175 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGE Y+ K F LN A G P+ANPRNAA+G LR+LNP R L+ F++ L Sbjct: 176 RGECYMPKAAFAKLNARKEADGDTPFANPRNAAAGSLRQLNPKITAGRELDTFIYTLIDA 235 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 K Q+E + M+ LGF N A+ I +Y + S R LPY IDG+V KV Sbjct: 236 DRFNVKTQHEAIAFMQDLGFTTNPSSEVASDMQAIDAYITKYTSDRDALPYGIDGIVLKV 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ +LQ QLG + PRW I++KF ++A T + DI +GRTG++TP A ++PV + G Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAKTVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATLHN D I+ +DIR+GD V++ +AG++IP+V ++V +R + Sbjct: 356 TVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVKKRPANTP 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P P CP C ++V + A RC + C AQ E+L HF SR+A NI+GL Sbjct: 405 PAPIPEECPSCGQKLVHLDDE------VALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + + + + AD++ L E + F + S+ NL ++IN R Sbjct: 458 GPKIIAQLQAKK----LVTDVADLYRLTATDL------EKLDKFKEKSINNLLNAINNSR 507 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 S+ER IF LGIRHVG + AR LA+++ S D + +P +G Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGSLDELMAA----------DQDQVAAIPNIGP 557 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 IA+A+V +++ VE L + S + K +V TG + R Sbjct: 558 TIAEAVVTYFKTDTVKKLVEQLRSAGVNLRYTGPTRPAVSDSFVSGKTVVITGKFAEFSR 617 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + + QLGA V+ +S+KTD++I GD GSKL KAQ L V IM+E L L+ Sbjct: 618 PELTKRLEQLGAKVTGSVSKKTDLVIAGDAAGSKLTKAQDLNVPIMDETALLTNLK 673 >gi|308176651|ref|YP_003916057.1| DNA ligase [Arthrobacter arilaitensis Re117] gi|307744114|emb|CBT75086.1| DNA ligase [Arthrobacter arilaitensis Re117] Length = 767 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 226/772 (29%), Positives = 376/772 (48%), Gaps = 70/772 (9%) Query: 1 MKKRQLIPIEALS--IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58 + ++ + P+E + E + L ++I H D YYQ P++ D EYDAL + Sbjct: 10 VSEKDVAPVETTNVPPEADKTRYDQLVEQIRAHRDAYYQNDAPLVSDVEYDALFHELQLL 69 Query: 59 AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RF 117 +P LA + P ++GGE++ + VTH+ SLE ++++++L ++ R Sbjct: 70 EATYPILAGQ---DSPTQEVGGEVSAAFASVTHASRMYSLEDVFSLDELEAWLERAQANA 126 Query: 118 WQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177 + + + E KIDG + + Y GK V AA RGDG +GEDV+ I IP+ L Sbjct: 127 ERLHPQTPVRWLCEVKIDGLALNLTYRDGKLVRAATRGDGTTGEDVTHNALTISDIPQQL 186 Query: 178 SLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRY 235 + P EVRGEV+I+ DF N+ +IA G+ P ANPRNAA+G LR+ +P R Sbjct: 187 EGSGWPAEFEVRGEVFIATEDFNKFNEALIAQGKAPLANPRNAAAGSLRQKDPAQTAKRP 246 Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295 L FVHGLG++ + Q + + MR G PV+ R ++ Y E R L Sbjct: 247 LRMFVHGLGRSRDFKLTEQSQAYELMRGWGLPVSPYGRVVDSRQAAKDYIAEHGEKRHDL 306 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 +DIDG+V KVD+ + Q+QLG +R PRW +++K+ ++ T+LLDI +Q+GRTG +TP Sbjct: 307 IHDIDGIVIKVDDLATQEQLGYTSRVPRWAVAYKYPPEEVHTKLLDIQVQVGRTGRVTPF 366 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 +EPV + G+ + ATLHN++ +K +++++GD +++++AG+VIP++V Sbjct: 367 GVMEPVLVAGSTVARATLHNQEVVK-----------AKNVKIGDTIILRKAGDVIPEIVG 415 Query: 416 IIVNERHPDA--QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473 ++ R + + F P+ CP C + + RC +C AQ ER+ Sbjct: 416 PVLPLREGNDELRDFIMPTECPSCGQPLA-----PAKEGDVDIRCLNAESCPAQLTERVA 470 Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDP-------------AFSIRIPADIFTLQRRQ--- 517 + R A +IE LG + ++ A++F L+ + Sbjct: 471 YLGGRSALDIEALGYEAAAALTSGPGEDPATLGGIILPAGPGPLKNEAELFNLKDKLEEL 530 Query: 518 -----------------------QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + S L D + K ++ L R + Sbjct: 531 GEVKVWREKRVKGEGTGKFELVPYFYSKATAKKPSAPTKSTMKLLDELEKAKDNPLWRVL 590 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +L IRHVG +R++A Y S + ++ + + L + VG IIA+A+V+ Sbjct: 591 VALSIRHVGPNASRAIATRYGSMDALLEVLD-----SGNAEAELSEIDSVGSIIAEALVD 645 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 +++ + V + ++N++ +E +V TGTL+ R A+E + G Sbjct: 646 WFKVDWHREIVASWQAAGVKMQDEQDENITKNLEGLAIVVTGTLENYSRDTAKEAIIVRG 705 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 + +S+KTD ++ G+ GSKL+KAQ LGV +++E F LL+Q R Sbjct: 706 GKATGSVSKKTDFLVAGEAAGSKLDKAQSLGVPVLDEAGFGVLLEQGPDAAR 757 >gi|42521704|ref|NP_967084.1| DNA ligase [Bdellovibrio bacteriovorus HD100] gi|81618744|sp|Q6MRL9|DNLJ_BDEBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|39574234|emb|CAE77738.1| DNA ligase [Bdellovibrio bacteriovorus HD100] Length = 684 Score = 518 bits (1335), Expect = e-144, Method: Composition-based stats. Identities = 242/709 (34%), Positives = 372/709 (52%), Gaps = 53/709 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K L++ IS HD Y+ KP I D EYD L I P + + P + Sbjct: 21 KKRHEELKKIISEHDHNYHVLDKPTITDYEYDQLFAELLDIE-KNP--KGLDLSDSPSQR 77 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H +P LSL ++ ED+ +F R+ +F +D + + E K DG Sbjct: 78 VGGTVLEGFTKAQHRLPMLSLANSYSPEDIFEFDERVRKFLNTED--PVEYLCELKFDGL 135 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKN 196 + + YE G+ V A RGDG GEDV+ I+ I +IP N P ++EVRGEV + K Sbjct: 136 SMELIYENGQLVRAITRGDGTVGEDVTHNIKTIKSIPLKLSHKNPPPLLEVRGEVLMFKE 195 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAKGQY 255 DF LN+ G++ +ANPRNAA+G +R+L+ FF + LG Q Sbjct: 196 DFARLNETQQENGQQTFANPRNAAAGTVRQLDSRIAASRPLRFFGYALGAVEGETFNTQK 255 Query: 256 EMLQKMRCLGFPVNNGVR-----QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + G P + A +V YY+ ++ +R LP+DIDG+V KV+ Sbjct: 256 NIQEYFNDHGIPTVLPYKEDLLVVAKGPEEVVKYYHHIEKVRPKLPFDIDGVVIKVNSLR 315 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG ARSPRW + KF +QA T + DI +Q+GRTG LTPVA ++PV +GG +TN Sbjct: 316 LQEDLGLVARSPRWATAAKFKPEQAQTTVEDIVVQVGRTGALTPVAIMKPVKVGGVTVTN 375 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI-IVNERHPDAQPFS 429 ATLHN+D I +DIR+GD V+++RAG+VIP+VV++ ++R D P+S Sbjct: 376 ATLHNQDEITR-----------KDIRIGDTVIIQRAGDVIPEVVEVVNPDKRPADRLPYS 424 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C S V+ RC L C A E LKHFV+R A NI+ +G + Sbjct: 425 IPERCPACDSVAVKAEGE------VVTRCVNPL-CIAVVKESLKHFVARRAMNIDKVGDR 477 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ ++ + +D + L + Q S + GD S N+ SI +N + Sbjct: 478 LIETLVDNK----LLTRFSDFYRLTKEQILS------LERQGDKSADNIIKSIENSKNPT 527 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RFIF+LGIR VG + + LA ++L+ F + L++VP +G +A Sbjct: 528 LARFIFALGIRFVGEQTGKHLADHFLTIDKFLEASE----------EELLQVPEIGAKVA 577 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++I ++ NP+ + V+A++ E+ I + + + TGTL ++R A++ Sbjct: 578 KSIRDWTGNPKLVDEVKAMI-ELGVKIAGPVRAQEGSLSGMSFLITGTLP-VKRDDAKDL 635 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + G + +S K + ++VGD+PGSK+EKAQ LGVKI++ E+ ++ Sbjct: 636 IERNGGKILGSVSSKLNYLVVGDDPGSKVEKAQGLGVKIISWEELQAMI 684 >gi|56962859|ref|YP_174586.1| NAD-dependent DNA ligase LigA [Bacillus clausii KSM-K16] gi|81366743|sp|Q5WJ30|DNLJ_BACSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56909098|dbj|BAD63625.1| DNA ligase [Bacillus clausii KSM-K16] Length = 671 Score = 518 bits (1335), Expect = e-144, Method: Composition-based stats. Identities = 231/696 (33%), Positives = 359/696 (51%), Gaps = 53/696 (7%) Query: 31 HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90 + YY P + DSEYD L + +PDL + P +IGG S KV Sbjct: 20 YGYHYYVLDTPKVPDSEYDRLMNELLQLEADYPDLV---TEDSPSVRIGGPPAPSFKKVA 76 Query: 91 HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150 H +P +SL +N EDLR F R+ + + + + E K DG +++ YE GK V Sbjct: 77 HRVPMMSLSNAFNEEDLRAFDRRVRQAVGEH----VSYVCELKFDGLAVSLTYENGKLVR 132 Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210 A RGDG GED++ +R +P IP L IEVRGE Y+ K F LN+ G Sbjct: 133 GATRGDGTIGEDITNNLRTVPAIPLRLKQPYS--IEVRGEAYMPKASFERLNEAKEQAGE 190 Query: 211 KPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVN 269 + +ANPRNAA+G LR+L+P R L+ F + +G+ + ++ L ++ LGF VN Sbjct: 191 EKFANPRNAAAGSLRQLDPKIAAKRNLSLFAYSIGEVEGKNVQTHFDSLMFLKELGFKVN 250 Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329 + T +++Y + R LPY+IDG+V KV+ + ++LG A+SPRW + K Sbjct: 251 EEAAECETIEDVIAYTEKWSERRHELPYEIDGVVVKVNSLADHEKLGFTAKSPRWATAFK 310 Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389 F ++ T L DI++ +GRTG++TP A L+PV + G + A+LHNED I+ Sbjct: 311 FPAEEVLTVLRDIELNVGRTGVVTPTALLDPVLVAGTTVRRASLHNEDLIR--------- 361 Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449 +D+++GD V+VK+AG++IP+VV ++ ++R + F P+ CP C S + R Sbjct: 362 --EKDVKLGDTVIVKKAGDIIPEVVGVLTDKRTGEEVDFHMPTECPECHSVLERLEGE-- 417 Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509 A RC C AQ E L HFVSR+A NI+GLG++ + F + A Sbjct: 418 ----VALRCLNPK-CPAQIREGLIHFVSRNAMNIDGLGEKVISQLFLHQLIA-------- 464 Query: 510 IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569 + ++ + G+ SV NL +I + SLER +F LGIR VGA+ A++ Sbjct: 465 --DVADLYLLEREELLQLERMGEKSVDNLLAAIEASKENSLERLLFGLGIRFVGAKAAKT 522 Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629 LA + + + + + L+ V +G+ +A +IV ++Q P +E L Sbjct: 523 LAYEFETMERLQEAT----------FEQLLAVNEIGEKMADSIVSYFQKPEVATLLEKLA 572 Query: 630 KEVSPSIGRHEKNVS-----SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684 K + K +V TG L + R +AQE + LG V+ +S+K Sbjct: 573 NAGVNMTYTGPKKAAIAEEAGVFAGKTVVLTGKLSQWTRKEAQEKIEALGGTVTGSVSKK 632 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 TD+++ G++ GSK +KA+ +G++I EEQF ++Q Sbjct: 633 TDLVVAGEDAGSKQKKAESIGIEIWTEEQFTQAVEQ 668 >gi|319951546|ref|ZP_08025350.1| NAD-dependent DNA ligase LigA [Dietzia cinnamea P4] gi|319434794|gb|EFV90110.1| NAD-dependent DNA ligase LigA [Dietzia cinnamea P4] Length = 726 Score = 518 bits (1335), Expect = e-144, Method: Composition-based stats. Identities = 212/724 (29%), Positives = 347/724 (47%), Gaps = 54/724 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + R+E + L + + H YY PI+ D+E+D L A+ +P L + P Sbjct: 19 EIRQEWTELAETVRDHQFRYYVKDAPIVSDAEFDRLFGELQALEEKYPAL---RTADSPT 75 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +GG + V H SL+ +++ E+LR ++ +D + F E KID Sbjct: 76 QLVGGGFSTDFAPVEHLERMTSLDNVFSEEELRDWVASAVEQAGVPEDR-LPFLCEVKID 134 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP----RVLSLNIPEIIEVRGEV 191 G + + Y GK V AA RGDG +GEDV+ R I IP +P ++EVRGEV Sbjct: 135 GVALDLVYRDGKLVSAATRGDGRTGEDVTLNARTIEDIPVTLTPTPDRPVPSLLEVRGEV 194 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 + DF LN ++A G+ P+ANPRN+A+G LR+ NP R L + HGLG Sbjct: 195 FFRLEDFAELNARLVAEGKAPFANPRNSAAGSLRQKNPAITAQRRLGMYCHGLGAVEGAT 254 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + +++ + G PV+ A +V RS ++IDGLV K+D+ + Sbjct: 255 FESLHDVYLALADWGLPVSPHTAPATGVEEVVERMRYWGEHRSDPEHEIDGLVVKIDDRA 314 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q++LG+ +R+PRW I++K+ ++ T LLDI + +GRTG +TP A +EPV + G+ ++ Sbjct: 315 VQRRLGQTSRAPRWAIAYKYPPEEVMTELLDIRVSVGRTGRVTPFAYMEPVLVAGSTVSL 374 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN+ + + + +GD V++++AG+VIP+V+ +V R + F F Sbjct: 375 ATLHNQTEVIR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVERRDGTEREFVF 423 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C + + + A RC +C AQ ERL + SR+A +IE LG + Sbjct: 424 PERCPECDTVLA-----PAREGDADWRCPNQRSCPAQLRERLFYLASRNALDIEALGYEG 478 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD---------- 540 + + A +F L T I + + Sbjct: 479 ASDLL----ASGVLENEAGLFDLTEADLLRTHLYTRIEKATRKQIEEGAEPERVVLTENG 534 Query: 541 -----SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ ++ L R + +L IRHVG AR+LA + + + + Sbjct: 535 RKLLANLATAKDRPLWRVLVALSIRHVGPTAARALATRFGTMEAIRAASD---------- 584 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655 L VG IA ++VE++ + V+ ++++ +E +V T Sbjct: 585 QELAETDGVGQTIAASVVEWFGVDWHREIVDRWAAAGVSMADERDESIPRTLEGLTIVAT 644 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 G+L+ R +E + G S +S+KTD ++VGDNPGSK KA++LG+ I++E F+ Sbjct: 645 GSLEGFTRDGIKEAIIARGGKASGSVSKKTDYVVVGDNPGSKAAKAEELGLTILDEAGFV 704 Query: 716 FLLQ 719 L++ Sbjct: 705 ELME 708 >gi|114797923|ref|YP_759116.1| DNA ligase, NAD-dependent [Hyphomonas neptunium ATCC 15444] gi|122942770|sp|Q0C577|DNLJ_HYPNA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|114738097|gb|ABI76222.1| DNA ligase, NAD-dependent [Hyphomonas neptunium ATCC 15444] Length = 701 Score = 518 bits (1335), Expect = e-144, Method: Composition-based stats. Identities = 280/691 (40%), Positives = 408/691 (59%), Gaps = 28/691 (4%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YYQ P + D++YDAL++R AI FP L R + P +++G E K HS P Sbjct: 33 YYQNDAPELTDADYDALRQRNLAIEARFPALKRE---DSPTDRVGAEAGDGFAKARHSAP 89 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL+ + ED+ F RI RF + ++ FT EPKIDG +++ YE GK + AA R Sbjct: 90 MLSLDNAFTDEDVADFAVRIRRFLGLAPEETLAFTAEPKIDGLSLSLTYENGKLMRAATR 149 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 GDG +GEDV+A R + IP L PE IEVRGEVY++K+ F LN GRK + Sbjct: 150 GDGQTGEDVTANARTLGDIPVKLKGKGWPERIEVRGEVYMAKSAFADLNAREAEAGRKVF 209 Query: 214 ANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 ANPRNAA+G LR+L+ +R L FF + SE FA+ Q+E ++ GF N+ + Sbjct: 210 ANPRNAAAGSLRQLDVEITKSRPLRFFAYAWAAASEPFAQTQFEAVKAFADWGFVTNSRM 269 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 + T ++SYY E+++ R++L YDIDG+VYKVD Q++LG +R+PRW I+HKF Sbjct: 270 IRIKTVEEVLSYYQEIEAERASLEYDIDGVVYKVDRLDWQQRLGFVSRAPRWAIAHKFPA 329 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 ++A T LL IDIQ+GRTG LTPVARLEPV +GG +++NATLHNED I L Sbjct: 330 EKAVTTLLGIDIQVGRTGSLTPVARLEPVTVGGVVVSNATLHNEDEIARL---------- 379 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 ++ GD+V ++RAG+VIP+V+ ++ P++ P CP+C S VR+++ G+ Sbjct: 380 -GVKPGDKVEIQRAGDVIPQVLRVVEP---GQGAPWAMPDTCPVCGSAAVREIDDA-GRA 434 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512 RCTGGL C AQ +ERLKHFVSR A +I+GLG++Q+ F + +++ P DIF Sbjct: 435 DVRRRCTGGLICPAQAVERLKHFVSRKALDIDGLGEKQVLLFHEK----GAVKAPQDIFR 490 Query: 513 LQR-RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 L++ + +E GFG S LY +I+ RR + RF+ LGIR+VG + A Sbjct: 491 LKKNIEAAGLPPLEEWEGFGAQSARKLYSAIDARRKVPFARFLNGLGIRYVGQTTSAQFA 550 Query: 572 KYYLSYQNFAQEINNIIA--HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629 + +LS+Q+F + ++ + LI + +G A++++ F P N + A L Sbjct: 551 RSFLSWQSFWAAVKAAEEGGIESEAYNELIGIDGIGQAAARSLMAFEGEPHNREMLAA-L 609 Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 E S + K +VFTGTL+K+ R +A+ + LGA V+ +S KTDI+I Sbjct: 610 LEEVEVEDEIPAETGSPVTGKTVVFTGTLEKMTRDEAKARASALGAKVAGTVSAKTDIVI 669 Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G GSKL KA+QLG+ +M E+++L L+ + Sbjct: 670 AGPGAGSKLVKAEQLGLAVMTEDEWLALIGE 700 >gi|294011619|ref|YP_003545079.1| NAD-dependent DNA ligase [Sphingobium japonicum UT26S] gi|292674949|dbj|BAI96467.1| NAD-dependent DNA ligase [Sphingobium japonicum UT26S] Length = 711 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 276/739 (37%), Positives = 417/739 (56%), Gaps = 56/739 (7%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 + + +++ +A L L +EI+ H+ Y+ +P I D+ YDAL R +A+ AFP L Sbjct: 1 MTDLTSMTEAEAANHLMRLAREIARHNRLYHDQDQPEITDAAYDALIRENNALEAAFPHL 60 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 RS + P ++G +L KV H++ +SL+ + ED+ +FI R+ RF ++ Sbjct: 61 VRS---DSPNAQVGAAPTSALKKVQHAVRMMSLDNGFADEDIAEFIARVRRFLALPENAP 117 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEI 184 + T EPKIDG ++RYEKG+ V AA RGDG +GEDV+A +R I IP L+ + P++ Sbjct: 118 VALTAEPKIDGLSCSLRYEKGELVLAATRGDGTTGEDVTANVRTIADIPERLTGDTVPDL 177 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKP-----YANPRNAASGILRRLNPT-DITRYLNF 238 EVRGEVY++K +F+ALN+ ++A P +ANPRNAA+G LR+ + +R L F Sbjct: 178 FEVRGEVYMAKANFVALNERLLAEAEDPEKARQFANPRNAAAGSLRQKDAAVTASRPLRF 237 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 HG G+ S + A+ Q ++Q + G PV++ + +T ++++Y +++ R+ LP+D Sbjct: 238 LAHGWGEVSAVPAETQLGVMQAIASWGLPVSDRLTCVDTLESLIAHYRAIEAARAELPFD 297 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKVD Q++LG A++PRW I+HKF ++A T L IDIQ+GRTG LTPV RL Sbjct: 298 IDGVVYKVDRLDWQQRLGFVAKAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRL 357 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 PV +GG +++N TLHN D I L +R GDR++V+RAG+VIP+V + Sbjct: 358 TPVTVGGVVVSNVTLHNADEIARL-----------GVRPGDRIVVQRAGDVIPQV--VDN 404 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 R PF+FP CP+CQS VR+ RCTGGL C AQ+ ERL+HFVSR Sbjct: 405 LTRDDPRAPFAFPDHCPVCQSEAVREEGE------VDIRCTGGLICPAQRFERLRHFVSR 458 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +IEGLG++ ++ F I PADIF L+ + + G+ + SV NL Sbjct: 459 AALDIEGLGEKSIEEFLD----LGWIAEPADIFRLKTHRADLMGR----EGWKEKSVDNL 510 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD---- 594 +I +R R +F LGIRH+GA AR L K Y + IIA + Sbjct: 511 LAAIEAKRQPDAARLLFGLGIRHIGAVTARDLLKRYATLPAIHALALEIIALRDAAQPAE 570 Query: 595 --------------WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 I V VG + A+ +F+ P N+ LL EVSP E Sbjct: 571 GEEESRFRNRLDKAIAEQIGVENVGSAVGHALADFFHEPHNVEVWNDLLSEVSPPDYVVE 630 Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700 +S + K +VFTG L+ + R +A+ ++GA + +S KTD+++ G GSKL++ Sbjct: 631 -TTASAVTGKTVVFTGKLETMSRDEAKAQAERMGAKAAGSVSAKTDLVVAGPGAGSKLKQ 689 Query: 701 AQQLGVKIMNEEQFLFLLQ 719 A LG+++++E + +++ Sbjct: 690 AAALGIEVIDEAAWAEIVK 708 >gi|303247047|ref|ZP_07333322.1| DNA ligase, NAD-dependent [Desulfovibrio fructosovorans JJ] gi|302491473|gb|EFL51358.1| DNA ligase, NAD-dependent [Desulfovibrio fructosovorans JJ] Length = 693 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 243/729 (33%), Positives = 365/729 (50%), Gaps = 58/729 (7%) Query: 12 LSIEQ-ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 +S E+ A L L +I HD YY P+I D+ YDAL R + A P+L +D Sbjct: 1 MSEEKDAAARLRELRAQIHEHDYRYYVLDDPVIEDAAYDALYRELRKLETAHPEL---DD 57 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-SIFFT 129 PN P ++GG + + H + SL+ + E+ R F+TR +++ + F Sbjct: 58 PNSPTKRVGGTVLPAFVSKPHRLAMYSLDNAMSEEEWRDFVTRAANKLEREGQPFTRTFW 117 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-------RVLSLNIP 182 ++PK DG + I YE G + A RGDG GEDV+ +R + +P +L +P Sbjct: 118 VDPKFDGLALEIIYENGVYAGALTRGDGEVGEDVTENVRTVKNVPLDLRPHAVRANLPVP 177 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVH 241 ++EVRGEV +++ DF LN+ G K +ANPRNAA+G +R+L+ +R L FF + Sbjct: 178 ALLEVRGEVVMTRQDFYELNERQREQGGKIFANPRNAAAGSVRQLDSKISASRPLTFFAY 237 Query: 242 GLGKTSE----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 +G ++ + LG PV + A + Y+ M R LP+ Sbjct: 238 AIGAQDWAGADPGWTTHSGIMAGLGKLGLPVAREGKVAGE-DAVYPYFKTMGVRRPDLPF 296 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 +IDG+V KVD + Q+ LG R+PR+ I+ KF +A T L I++Q+GRTG+LTPVA Sbjct: 297 EIDGVVVKVDSLADQEALGFTGRAPRFAIALKFPAHEAETVLKRIEVQVGRTGVLTPVAI 356 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 LEPV++ G ++ ATLHNED IK +D+R GD V+V+RAG+VIP+VV ++ Sbjct: 357 LEPVSLAGVTVSRATLHNEDEIK-----------AKDLRAGDTVVVRRAGDVIPEVVRVV 405 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 +R DA+PF FP CP C S VR AA RC LAC A + +FVS Sbjct: 406 PEKRPADAEPFPFPHICPSCHSPAVRAPGE------AAWRCVN-LACPAMLRRGIAYFVS 458 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 + +IEG+G + + ++ PAD+F L ++ V+ Sbjct: 459 KSGLDIEGIGNKWVKTLIDK----GMVKTPADLFNLTEMDLIPMERMAEKSAANFVAAVE 514 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L + I +LG+R VG AR+LA+++ A + Sbjct: 515 KAQQNAT-----LAKLIAALGMRQVGTRTARTLAEHFRDLDGLAAATS----------ED 559 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVF 654 L +P +G +A +I EF+ N N +E + + + V + + KK +F Sbjct: 560 LTALPDIGPEVAGSIREFFDNAANRELIERFRQIGLWPVSEPKTAVPPEATPLGGKKFLF 619 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TGTL + R KA+ V G V +S+K D ++VG +PGSKL KAQ LG+ I++ E F Sbjct: 620 TGTLPGMSREKAEALVEAAGGRVMKSISKKLDYLVVGADPGSKLAKAQSLGITILDAEAF 679 Query: 715 LFLLQQYNT 723 LL + N Sbjct: 680 QELLGEENA 688 >gi|297202535|ref|ZP_06919932.1| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083] gi|197709937|gb|EDY53971.1| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083] Length = 730 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 212/737 (28%), Positives = 354/737 (48%), Gaps = 62/737 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +AR++ + L ++I H YY P++ D+++D L R +A+ +P+L P+ Sbjct: 12 PSEAREKHAQLAEQIEEHRFRYYVNDAPVVSDADFDKLLRSLEALEDEYPEL---RTPDS 68 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+ G V H LSL+ ++ E+L + R+ + D + E K Sbjct: 69 PTQKVAGAYETEFTSVQHRSRMLSLDNAFSDEELAAWAERVAKDVGTTDYH---LLCELK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG + + YE G+ AA RGDG +GED++ +R I IP L+ + P+++E+RGEVY Sbjct: 126 VDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLTGDKVPDLVEIRGEVY 185 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 F LN ++ G KP+ANPRNAA+G LR+ +P TR L+ VHG+G Sbjct: 186 FPMEKFEELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGALEGFDG 245 Query: 252 KGQYEM-LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + ++ G P + + G+ + R ++ ++IDG V K+DE Sbjct: 246 MTRLSQGYDLLKSWGLPTAKHNKVVDGLDGVREFIAYFGENRHSVEHEIDGAVVKLDEIP 305 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +R+PRW I++K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ + Sbjct: 306 LQGRLGSTSRAPRWAIAYKYAPEEVNTKLINIRVGVGRTGRVTPYAQVEPVTVAGSEVEF 365 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN+D +K + + +GD V++++AG+VIP+++ +V+ R + F Sbjct: 366 ATLHNQDVVK-----------LKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVM 414 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK-- 488 P+ CP C + + + RC C AQ ERL + R + +IE G Sbjct: 415 PAECPECGTALRPM-----KEGDVDLRCPNARTCPAQLRERLFYLAGRKSLDIEHFGYVA 469 Query: 489 ----------------QQLDFFFKSEDPAFSIRIP--ADIFTLQRRQQTSTTK-----IE 525 + D F + + I+ L +R + + Sbjct: 470 AAALTQPLEPSDPPLTDEGDLFDLTIEQLLPIKAYVLDQDSGLPKRDPKTGEEKVATVFA 529 Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 N G + + ++I ++ L R + L IRHVG A +LA+ + S Q Sbjct: 530 NQQGEPKKNAVAMLENIAAAKDRPLARVLTGLSIRHVGPVAAEALARNFRSIDRIEQASE 589 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-- 643 L VG IIA+++ E++ + + Sbjct: 590 ----------EELANTDGVGSIIAKSLKEWFAEDWHQEILRKWKAAGVRMEEEGSGEDEG 639 Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 +E +V TGTL++ R A+E + GA V+ +S+KT ++VGDNPGSK +KA Q Sbjct: 640 PRPLEGLTVVVTGTLERFTRDGAKEALQSKGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQ 699 Query: 704 LGVKIMNEEQFLFLLQQ 720 L V ++NE+ F LL+Q Sbjct: 700 LKVPVLNEDGFDVLLEQ 716 >gi|329959979|ref|ZP_08298475.1| DNA ligase [Bacteroides fluxus YIT 12057] gi|328533113|gb|EGF59882.1| DNA ligase [Bacteroides fluxus YIT 12057] Length = 665 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 227/706 (32%), Positives = 354/706 (50%), Gaps = 48/706 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A++++ L E+ H+ YY + P I D E+D + P+ +D N P Sbjct: 3 AKEKIDRLRAELHQHNYNYYVLNAPEISDKEFDDKMHELQNLEKEHPEY---QDENSPTM 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G ++N + +V H P LSL ++ ++ F R+ + + E K DG Sbjct: 60 RVGSDLNKNFTQVAHKYPMLSLGNTYSENEVTDFYDRVKKTL----NEDFEICCELKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 T I++ YE GK + A RGDG G+DV+ ++ I TIP VL N P E+RGE+ + Sbjct: 116 TSISLTYEDGKLIRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGNYPRSFEIRGEILMPWE 175 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN E A +ANPRNAASG L+ N + E+ G YE Sbjct: 176 SFEMLNREREAREEPLFANPRNAASGTLKSQNSAVVASRKLDAYLYYLLGEELPCDGHYE 235 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 LQ GF ++ ++A++ + Y N + R LP DG+V KV+ QK LG Sbjct: 236 NLQMAGSWGFKISEHTKKASSLEEVFEYINYWDTERKNLPVATDGIVLKVNSLRQQKNLG 295 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 FTAKSPRWAIAYKFQAERALTRLNKVSYQVGRTGAVTPVANLDPVQLSGTVVKRASLHNA 355 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCP 435 D I+GL D+ +GD V V++ GE+IPK+ + N R + F + CP Sbjct: 356 DIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKNARGMLLGEKVRFITHCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C +R++R AAH C AC Q R++HF+SR A NI+GLG + +D F+ Sbjct: 405 ECGNRLIRYEGE------AAHYCPNETACPPQIKGRIEHFISRKAMNIDGLGPETVDMFY 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + I+ AD++ L+ + + G+ S N+ + I + + ER +F Sbjct: 459 R----LGLIKDTADLYDLKADDIKN------LDRMGEKSAENIINGIAASKEVPFERVLF 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG +A+ +AK + + N D +L + +G+ IAQ+I+ + Sbjct: 509 ALGIRFVGETVAKKIAKSFTDIEELI----------NTDLENLKNIDEIGEKIAQSIITY 558 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + NP N V L + E ++ + +V +G R + +E + + Sbjct: 559 FSNPFNRELVGRLKAAGLQLFRKEEDLSGYTDKLTGQSIVISGVFTHHSRDEYKELIEKN 618 Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G +S KT I+ G+N G +KLEKAQ+LGVKIM+E++FL L+ Sbjct: 619 GGKNVGSISAKTSFILAGENMGPAKLEKAQKLGVKIMSEDEFLTLI 664 >gi|124006376|ref|ZP_01691210.1| DNA ligase, NAD-dependent [Microscilla marina ATCC 23134] gi|123988033|gb|EAY27704.1| DNA ligase, NAD-dependent [Microscilla marina ATCC 23134] Length = 691 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 205/711 (28%), Positives = 357/711 (50%), Gaps = 45/711 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ ++A++ + L +++ +++ YYQ ++ D ++D L + FP + Sbjct: 1 MTNQEAQERIRELSKDLHHYNYMYYQKHVSVVTDYKFDKLLEELIDLEEKFPQFKKD--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + + H LSL ++ +DL F R+ + DD I + E Sbjct: 58 DSPSQRVGGTITKDFPTIKHRYRMLSLGNTYSKDDLLDFDKRLKKLLG--DDKEIEYICE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 K DG I++ YE GK V AA RGDG G+DV+A R I T+P + N P EVRGE Sbjct: 116 LKFDGVSISLTYENGKLVTAATRGDGVQGDDVTANARTIRTVPISIQGNSFPANFEVRGE 175 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 V++ F A+N + + G+ YANPRN ASG ++ + ++ + + Sbjct: 176 VFMPNKVFEAINAQRVKEGKDLYANPRNTASGTMKLQDSAEVAKRKLDAYLYFLLGDNLP 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K E ++ + GF V+ ++ ++ Y N + R LP D DG+V KV++ Sbjct: 236 YKTHEEAIKAVESWGFHVSPTYKRCTGIDAVMEYVNHWEKERKNLPVDTDGVVIKVNDID 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG ++SPRW I++K+ + ST L I Q+GRTG +TPVA L PV + G + Sbjct: 296 LQEQLGFTSKSPRWAIAYKYKAESVSTVLNSITYQVGRTGSVTPVAELTPVQLAGTTVKR 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D I+ + D V V++ GE+IPKV + + +R +AQ F Sbjct: 356 ASLHNADEIES----------RLQLHENDTVFVEKGGEIIPKVTGVDLTKRAANAQAVKF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 CP C + +VR A H C C Q R++HF+ R+A +I+ +G + Sbjct: 406 IDHCPECGTALVRKDGE------ANHYCPNEKGCPPQIKGRIEHFIQRNALDIDSMGGET 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F+ ++ AD++ L +Q S + FG+ S NL + + + ++IS Sbjct: 460 INQLFEK----GLVKNVADLYDLTLKQLLS------LDRFGEKSAHNLIEGLKQSKSISF 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R ++ LGIR VG +A+ LA ++ + + + + L+ V +G IA Sbjct: 510 ARVLYGLGIRFVGKTVAQKLAVHFKTMEAIQKASH----------DELVAVEDIGGRIAD 559 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQE 668 +++E +++ N+ + L + S +++ K V +GT Q+ R + ++ Sbjct: 560 SLIEHFKDTENLDVINRLKAAGLQFEDNTPVLQKDSDKLDGKTFVVSGTFQQFSRDEIKQ 619 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G V + +S+K D +I GD G SKL+KA++L V +++E++F+ ++ Sbjct: 620 KIEANGGKVVSSISKKLDYLIAGDKMGPSKLDKAKKLDVTMISEDEFVQMV 670 >gi|298385661|ref|ZP_06995219.1| DNA ligase, NAD-dependent [Bacteroides sp. 1_1_14] gi|298261802|gb|EFI04668.1| DNA ligase, NAD-dependent [Bacteroides sp. 1_1_14] Length = 666 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 225/709 (31%), Positives = 354/709 (49%), Gaps = 51/709 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 ++++ L E+ H+ YY + P I D E+D R + A P+ D N P Sbjct: 2 DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLELAHPEYK---DENSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G +++ + +V H P LSL ++ ++ F R+ + + E K D Sbjct: 59 MRVGSDISKNFTQVAHKYPMLSLANTYSESEVTDFYERVRKAL----NEDFEICCEMKYD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194 GT I++ YE GK V A RGDG G+DV+ ++ I +IP VL N P E+RGE+ + Sbjct: 115 GTSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPSSFEIRGEILMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 F LN E A +ANPRNAASG L+ N + + + G Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYLLGDNLPCDGH 234 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 YE LQ+ GF +++ R+ T + + N R LP DG+V KV+ QK Sbjct: 235 YENLQEAAKWGFKISDLTRKCQTLEEVFEFINHWDVERKNLPVATDGIVLKVNSLRQQKN 294 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+ V + G ++ A+LH Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDAVQLSGTIVKRASLH 354 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER-HPDAQPFSFPSF 433 N D I+GL D+ +GD V V++ GE+IPK+ + + R + F + Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFITN 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S+++R AAH C AC Q R++HF+SR A NI+GLG + +D Sbjct: 404 CPECGSKLIRYEGE------AAHYCPNETACPPQIKGRIEHFISRKAMNIDGLGPETVDM 457 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F++ I AD++ L+ + G+ S N+ I + + + ER Sbjct: 458 FYR----LGLIHNTADLYELKADDIKG------LDRMGEKSAENIITGIEQSKTVPFERV 507 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGIR VG +A+ +AK + Q D LI + +G+ IA++I+ Sbjct: 508 IFALGIRFVGETVAKKIAKSFGDIDELQQA----------DLEKLISIDEIGEKIARSIL 557 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYV 670 ++ N N V L KE + R E+++S ++ + +V +G R + ++ + Sbjct: 558 LYFSNESNRELVGRL-KEAGLQLYRTEEDMSGYTDKLAGQSIVISGVFTHHSRDEYKDLI 616 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G +S KT I+ GDN G +KLEKA++LGV I++E++FL L+ Sbjct: 617 EKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGVTILSEDEFLKLI 665 >gi|301066103|ref|YP_003788126.1| NAD-dependent DNA ligase [Lactobacillus casei str. Zhang] gi|300438510|gb|ADK18276.1| NAD-dependent DNA ligase [Lactobacillus casei str. Zhang] Length = 674 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 235/717 (32%), Positives = 366/717 (51%), Gaps = 51/717 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P ++E+A+ E+ L ++++ YY P + D+ YD R A+ A+P L Sbjct: 5 PAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKLV- 63 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++G +N KV H IP LS+ +++ E+L ++ R+ + + Sbjct: 64 --TPDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARMQSNVG----HPVD 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + +E KIDG +++ YE GK V + RGDG+ GEDV+ + I ++P+ L + +EV Sbjct: 118 YNVELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPKQLKQPLS--LEV 175 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGE Y+ K F LN G P+ANPRNAA+G LR+L+ R L+ F++ L + Sbjct: 176 RGECYMPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEP 235 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + Q+E + M+ LGF N A I +Y + + R LPY IDG+V KV Sbjct: 236 EQFNVTTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKV 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ +LQ QLG + PRW I++KF ++A T + DI +GRTG++TP A ++PV + G Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATLHN D I+ +DIR+GD V++ +AG++IP+V ++V +R D Sbjct: 356 TVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVAKRPVDTP 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P P CP C ++V + A RC + C AQ E+L HF SR+A NI+GL Sbjct: 405 PAPIPEVCPSCGQKLVHLDDE------VALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + + ++ AD++ L + F + S+ NL +IN R Sbjct: 458 GPKIVAQLQAK----HLVKDVADLYHLTAADL------AKLDKFKEKSINNLLSAINNSR 507 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 S+ER IF LGIRHVG + AR LA+++ + ++ VP +G Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGDLDHLMTASQ----------EAIADVPNIGP 557 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 IA+AIV +++ + L + + S + K +V TG + R Sbjct: 558 TIAEAIVTYFKAATVQKLITQLREADVNLRYTGPTKPVVKDSFVAGKTVVITGKFAEFSR 617 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + LGA V+ +S+KTD++I GD GSKL KAQ L V IMNE + L L+ Sbjct: 618 PALTKQLEGLGAKVTGSVSKKTDLLIAGDAAGSKLAKAQSLNVPIMNETELLANLKD 674 >gi|295426520|ref|ZP_06819170.1| NAD-dependent DNA ligase LigA [Lactobacillus amylolyticus DSM 11664] gi|295063888|gb|EFG54846.1| NAD-dependent DNA ligase LigA [Lactobacillus amylolyticus DSM 11664] Length = 669 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 213/716 (29%), Positives = 367/716 (51%), Gaps = 52/716 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + ++++QA+ E+++L +++ + YY P + D+ YD R + FP+L Sbjct: 1 MADITLDQAKTEVAALRKQLDEWAEAYYSKDAPEVEDNVYDQKYNRLLELEKDFPELV-- 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ ++GG+++ KV H IP LS+ +++ E+LR+F RI + + + + Sbjct: 59 -TPDSITQRVGGKIDTKFTKVAHPIPMLSMGDVFSKEELREFDQRIQKQVG----HPVAY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ Y+ G+ + A+ RG+G GEDV+A R I IP+ L + IEVR Sbjct: 114 NVELKIDGLSLSLEYQNGRLMRASTRGNGQVGEDVTANARFIRDIPQTLPKPL--TIEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+SK F LN E G++ +ANPRNAA+G LR+L+ + Sbjct: 172 GECYMSKEAFAKLNAERDENGKEVFANPRNAAAGSLRQLDAKVTKKRDLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ +++M LGF N R+ T I + +E + R +LPY IDG+V KVD+ Sbjct: 232 EGITSQHQAIEEMHKLGFHTNQTGRKLETLDEIFDFIDEYTAKRDSLPYCIDGIVLKVDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 ++++LG + PRW I++KF ++ T + DI+ +GRTG++TP A ++PV + G + Sbjct: 292 LGIEQELGSTVKVPRWEIAYKFPPEEQETVVRDIEWTVGRTGVVTPTAVMDPVQLAGTTV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A LHN D +K +D+R+GD V + +AG++IP++ ++++++R D++P+ Sbjct: 352 ARAVLHNPDLLK-----------EKDVRIGDTVKLHKAGDIIPEISEVVLSKRPADSKPY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C ++V A RC +C AQ E + HF SR A NI GLG Sbjct: 401 EIPTTCPSCGQKLVHLKGE------VALRCINP-SCPAQLEEGIIHFASRQAMNIAGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + + AD++ L + F + S+ NL +I+K + Sbjct: 454 KIVKQLIAKD----LVHNVADLYHLTPDDLM------QLDHFKEKSINNLLTAIDKSKQN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E + LGI HVGA++AR +++ + + D + + +G I Sbjct: 504 SVELLLTGLGIDHVGAKVARLISQKFKNLPKIMAA----------DVQEVAAIDTIGPTI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI-----GRHEKNVSSEIENKKLVFTGTLQKIQR 663 A+++ ++ P +E L + + + +NK +V TG L R Sbjct: 554 AESLTTYFAQPAVQKLIEELEESGLNMDYLGQDETEAEIADNFFKNKTVVLTGKLAHYTR 613 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + + LGA V+ +S KTD +I G + GSK KAQ LGV + EE+ + ++ Sbjct: 614 SEFTKRLQSLGAKVTGSVSHKTDYVIYGKDAGSKFTKAQSLGVPTLTEEEAIAQIK 669 >gi|191637997|ref|YP_001987163.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Lactobacillus casei BL23] gi|254781352|sp|B3WD54|DNLJ_LACCB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190712299|emb|CAQ66305.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Lactobacillus casei BL23] gi|327382073|gb|AEA53549.1| DNA ligase [Lactobacillus casei LC2W] gi|327385217|gb|AEA56691.1| DNA ligase [Lactobacillus casei BD-II] Length = 674 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 235/717 (32%), Positives = 366/717 (51%), Gaps = 51/717 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P ++E+A+ E+ L ++++ YY P + D+ YD R A+ A+P L Sbjct: 5 PAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKLV- 63 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++G +N KV H IP LS+ +++ E+L ++ R+ + + Sbjct: 64 --TPDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARMQSNVG----HPVD 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + +E KIDG +++ YE GK V + RGDG+ GEDV+ + I ++P+ L + +EV Sbjct: 118 YNVELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPKQLKQPLS--LEV 175 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGE Y+ K F LN G P+ANPRNAA+G LR+L+ R L+ F++ L + Sbjct: 176 RGECYMPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEP 235 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + Q+E + M+ LGF N A I +Y + + R LPY IDG+V KV Sbjct: 236 EQFNVTTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKV 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ +LQ QLG + PRW I++KF ++A T + DI +GRTG++TP A ++PV + G Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATLHN D I+ +DIR+GD V++ +AG++IP+V ++V +R D Sbjct: 356 TVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVAKRPVDTP 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P P CP C ++V + A RC + C AQ E+L HF SR+A NI+GL Sbjct: 405 PAPIPEACPSCGQKLVHLDDE------VALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + + ++ AD++ L + F + S+ NL +IN R Sbjct: 458 GPKIVAQLQAK----HLVKDVADLYHLTAADL------AKLDKFKEKSINNLLSAINNSR 507 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 S+ER IF LGIRHVG + AR LA+++ + ++ VP +G Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGDLDHLMTASQ----------EAIADVPNIGP 557 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 IA+AIV +++ + L + + S + K +V TG + R Sbjct: 558 TIAEAIVTYFKAATVQKLITQLREADVNLRYTGPTKPVVKDSFVAGKTVVITGKFAEFSR 617 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + LGA V+ +S+KTD++I GD GSKL KAQ L V IMNE + L L+ Sbjct: 618 PALTKQLEGLGAKVTGSVSKKTDLLIAGDAAGSKLAKAQSLNVPIMNETELLANLKD 674 >gi|167750769|ref|ZP_02422896.1| hypothetical protein EUBSIR_01747 [Eubacterium siraeum DSM 15702] gi|167656204|gb|EDS00334.1| hypothetical protein EUBSIR_01747 [Eubacterium siraeum DSM 15702] Length = 660 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 228/710 (32%), Positives = 366/710 (51%), Gaps = 51/710 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + EQ + E L ++ H+ YY P I D EYD L RR I P++ Sbjct: 1 MDKEQIKSEYEQLCKQAEQHNFNYYVLDDPTIEDDEYDRLMRRIKEIEAENPEIV---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +GG + KVTH + SL+ +++ +L +F R+ + K + +E Sbjct: 58 SSPTQHVGGYAINTFEKVTHEVQMGSLQDVFSKGELYEFDERVKKAVGKAV-----YCVE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG +++ Y+ G F + RGDG GED++ ++ I +IP L+ IP IEVRGEV Sbjct: 113 PKIDGLSVSLEYKDGIFTRGSTRGDGFVGEDITKNLKTIKSIPMELNEKIP-FIEVRGEV 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+ K DF L + + +P NPRNAA+G LR+ + +R L+ FV L + + Sbjct: 172 YMPKADFEKLVRKQLENDEQPAKNPRNAAAGSLRQKDSRVTASRGLDIFVFNLQRIAGRE 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L M+ LGF V +G + + VS E+ R + YDIDG V KVD F Sbjct: 232 LTCHSESLDYMKSLGFNVIDGYKTFDNIEDAVSRIMEIGENRQSYSYDIDGAVIKVDNFE 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 L+ +LG A+ P+W ++ K+ ++ T+LLDI+I +GRTG LTPVA EPV + G ++ Sbjct: 292 LRNELGSTAKVPKWAVAFKYPPEEKETKLLDIEINVGRTGALTPVAVFEPVWLAGTTVSR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A LHN+DYI +DIR+GD + V++AG++IP+VV + + +++PF Sbjct: 352 AVLHNQDYIDS-----------KDIRIGDIIAVRKAGDIIPEVVRSVSHA--ENSEPFVI 398 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C + R + A RC + C AQ L+ ++HF SR A NI+GLG+ Sbjct: 399 PHICPVCHGKAERAEDE------AVIRCVN-IDCPAQLLKNIEHFASRPAMNIDGLGEAV 451 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + ++ I AD++ LQ++ E + GF VS + L +I + S Sbjct: 452 VKQLVENR----LISTVADLYGLQQQDL------EMLPGFAKVSASKLIANIENSKANSP 501 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +R +F+LGI+ +G + A+ L K++ S + ++ + V GDI+A Sbjct: 502 DRLLFALGIKGIGQKNAQLLMKHFGSIEKLSET----------SPEEISAVENFGDILAN 551 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I P ++ L ++ + + ++ V TGTL + R +A+ + Sbjct: 552 NIFTALHEPHMTELIKRLKSYGVNTVYQSDVKSD-KLAGLTFVITGTLPDMTRDEAKTLI 610 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 Q G S +S+KT ++ G+ GSKL KAQQLGV +++++Q + ++ + Sbjct: 611 EQNGGKCSGSVSKKTSYVLAGEEAGSKLTKAQQLGVTVISQQQLIEMIGE 660 >gi|71064896|ref|YP_263623.1| NAD dependent DNA ligase [Psychrobacter arcticus 273-4] gi|123734475|sp|Q4FUW9|DNLJ_PSYA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|71037881|gb|AAZ18189.1| probable NAD dependent DNA ligase [Psychrobacter arcticus 273-4] Length = 691 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 375/711 (52%), Gaps = 43/711 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + + ++ + + H+ YY PI+ DSEYD L+R + +PDL + P+ Sbjct: 21 NDDAIVTQMRTFIDTLKQHNYAYYVLDNPILEDSEYDQLRRSLLELEEEYPDLVQ---PD 77 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P+N++G + +VTH IP LSL ++ DLR F+ R+ + + +E Sbjct: 78 SPINQVGDMPLPAFTQVTHDIPMLSLGNVFEYNDLRDFMRRVNDRLSVAQQSP-EYEMEL 136 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEV 191 K+DG ++++Y GKF A RGDG +GED++ + I +P L+ E++EVRGEV Sbjct: 137 KLDGLAVSLKYVHGKFTQAVTRGDGQTGEDITQNAKTIRNMPLWLADAADIELLEVRGEV 196 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF 250 + K F LN K +ANPRNAA+G LR+L+P+ F+ + + + Sbjct: 197 LMPKAGFERLNRLAAEKEEKTFANPRNAAAGSLRQLDPSVAASRPLAFYAYSVNQGLLDT 256 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q L ++ +GF + V + +YY + + R+ LP++IDG+V KV+ + Sbjct: 257 IDTQSAALAWIKDIGF-SVSAVEVVSNPREAQTYYESIIATRADLPFEIDGMVIKVNSLA 315 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG +R PRW ++KF + TRL ID Q+GRTG +TPV +LEPV +GG ++N Sbjct: 316 LQQQLGFLSREPRWATAYKFPAETVMTRLHAIDWQVGRTGQITPVGKLEPVKVGGVTVSN 375 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 TLHN I+ L D+R GD V V RAG+VIPKV + +R +++P Sbjct: 376 VTLHNFGEIQRL-----------DVRAGDMVSVHRAGDVIPKVTRVWHEQRPENSEPVQL 424 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C S VV + A RCTGGL C AQQ E L HFVSR A +I+GLG Sbjct: 425 PSTCPVCDSPVVLPKDE------ALARCTGGLFCPAQQQEALIHFVSRRAMDIDGLGASW 478 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L FF+ ++ ADI+ L Q+ ++ + G+ SV N+ +I ++ +L Sbjct: 479 LISFFEH----GLVKTVADIYQLHNHQE----ELVTLEKLGEKSVQNIISAIEASKHTTL 530 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFI++LGIR VG A++LA+ + L+ P VG I A+ Sbjct: 531 SRFIYALGIRGVGETTAQNLAQQFGDLDALMSA----------SIEKLLLTPDVGAITAE 580 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEY 669 +F++ P NI + AL + + ++ + V TG L + R +A+ Sbjct: 581 LAYKFFRAPHNIEVITALREAGVHWDKVEQVVSEGLPLDGQTWVITGALDSMARDEAKAK 640 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA VS +S KT ++ GD GSK+ KA++LGVK++ EE+FL L+ + Sbjct: 641 LQALGAKVSGSISAKTTALLAGDKAGSKMAKAEKLGVKVVGEEEFLALVGE 691 >gi|291454298|ref|ZP_06593688.1| NAD-dependent DNA ligase LigA [Streptomyces albus J1074] gi|291357247|gb|EFE84149.1| NAD-dependent DNA ligase LigA [Streptomyces albus J1074] Length = 736 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 209/742 (28%), Positives = 343/742 (46%), Gaps = 61/742 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 AR+ L +++ H YY +P++ D+E+D R + +P L P+ Sbjct: 19 PADARERHKHLAEQVEEHRFRYYVNDQPVVSDAEFDRQLRALTQLEEQYPPL---RTPDS 75 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+ G+ V H LSL+ ++ E+L + R+ + + F E K Sbjct: 76 PTQKVAGQYETEFTSVQHRERMLSLDNAFDDEELAAWAERVAKEVGAPGYH---FLCELK 132 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG + + YE G+ AA RGDG GED++ +R I IP L + P ++E+RGEV+ Sbjct: 133 VDGLAVNLTYEHGRLTRAATRGDGRVGEDITPNVRTISDIPERLHGDDLPALVEIRGEVF 192 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 +F LN ++ G KP+ANPRNAA+G LR+ +P TR L+ VHG+G Sbjct: 193 FPMEEFEKLNARLVEAGEKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGAREGFTI 252 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +R G P + G+ ++ R ++ ++IDG+V K+DE L Sbjct: 253 DCLSHAYDLLRSWGLPTARHNKVVEGLDGVRAFITYYGDHRHSVEHEIDGVVVKLDEVPL 312 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG +R+PRW I+ K+ ++ ++RL+DI + +GRTG +TP A++EPV + G+ + A Sbjct: 313 QGRLGSTSRAPRWAIAWKYPPEEVNSRLIDIRVGVGRTGRVTPYAQVEPVTVAGSEVEFA 372 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+D ++ + + +GD V++++AG+VIP+++ + + R +PF+ P Sbjct: 373 TLHNQDVVR-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGTERPFTMP 421 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG---- 487 + CP C + + + RC +C AQ ER+ + R +IE G Sbjct: 422 AECPECSTPLKPM-----KEGDIDLRCPNARSCPAQLRERIYYLAGRKCLDIENFGYVAA 476 Query: 488 --------------KQQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTSTTK-----IEN 526 + + D F + D IR L +R + + N Sbjct: 477 TALTQPLEPSEPPLRDEGDLFDLTVDQLLPIRSYVLDPDSGLPKRDPKTGEEKIVTFFAN 536 Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 G + + D I + L R + L IRHVG A++LA+ + S + Sbjct: 537 KQGEAKKNTLAMLDHIEAAKQRPLARVLTGLSIRHVGPVAAQALAREFRSIERIEAATE- 595 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVS 644 L + VG IA ++ ++ + V + E Sbjct: 596 ---------EELAQTEGVGPTIAASLKSWFAEEWHREIVRKWREAGVRMEEESTGEDEGP 646 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 +E +V TGTL+ R A+E + GA V+ +S+KT ++VGDNPGSK +KA Q Sbjct: 647 RPLEGLTVVVTGTLEHHTRDNAKEALQNQGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQA 706 Query: 705 GVKIMNEEQFLFLLQQYNTTLR 726 V +++E F LL Q R Sbjct: 707 KVPVLDEAGFAVLLDQGPDAAR 728 >gi|239982451|ref|ZP_04704975.1| NAD-dependent DNA ligase LigA [Streptomyces albus J1074] Length = 728 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 209/742 (28%), Positives = 343/742 (46%), Gaps = 61/742 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 AR+ L +++ H YY +P++ D+E+D R + +P L P+ Sbjct: 11 PADARERHKHLAEQVEEHRFRYYVNDQPVVSDAEFDRQLRALTQLEEQYPPL---RTPDS 67 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+ G+ V H LSL+ ++ E+L + R+ + + F E K Sbjct: 68 PTQKVAGQYETEFTSVQHRERMLSLDNAFDDEELAAWAERVAKEVGAPGYH---FLCELK 124 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG + + YE G+ AA RGDG GED++ +R I IP L + P ++E+RGEV+ Sbjct: 125 VDGLAVNLTYEHGRLTRAATRGDGRVGEDITPNVRTISDIPERLHGDDLPALVEIRGEVF 184 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 +F LN ++ G KP+ANPRNAA+G LR+ +P TR L+ VHG+G Sbjct: 185 FPMEEFEKLNARLVEAGEKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGAREGFTI 244 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +R G P + G+ ++ R ++ ++IDG+V K+DE L Sbjct: 245 DCLSHAYDLLRSWGLPTARHNKVVEGLDGVRAFITYYGDHRHSVEHEIDGVVVKLDEVPL 304 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG +R+PRW I+ K+ ++ ++RL+DI + +GRTG +TP A++EPV + G+ + A Sbjct: 305 QGRLGSTSRAPRWAIAWKYPPEEVNSRLIDIRVGVGRTGRVTPYAQVEPVTVAGSEVEFA 364 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+D ++ + + +GD V++++AG+VIP+++ + + R +PF+ P Sbjct: 365 TLHNQDVVR-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGTERPFTMP 413 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG---- 487 + CP C + + + RC +C AQ ER+ + R +IE G Sbjct: 414 AECPECSTPLKPM-----KEGDIDLRCPNARSCPAQLRERIYYLAGRKCLDIENFGYVAA 468 Query: 488 --------------KQQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTSTTK-----IEN 526 + + D F + D IR L +R + + N Sbjct: 469 TALTQPLEPSEPPLRDEGDLFDLTVDQLLPIRSYVLDPDSGLPKRDPKTGEEKIVTFFAN 528 Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 G + + D I + L R + L IRHVG A++LA+ + S + Sbjct: 529 KQGEAKKNTLAMLDHIEAAKQRPLARVLTGLSIRHVGPVAAQALAREFRSIERIEAATE- 587 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVS 644 L + VG IA ++ ++ + V + E Sbjct: 588 ---------EELAQTEGVGPTIAASLKSWFAEEWHREIVRKWREAGVRMEEESTGEDEGP 638 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 +E +V TGTL+ R A+E + GA V+ +S+KT ++VGDNPGSK +KA Q Sbjct: 639 RPLEGLTVVVTGTLEHHTRDNAKEALQNQGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQA 698 Query: 705 GVKIMNEEQFLFLLQQYNTTLR 726 V +++E F LL Q R Sbjct: 699 KVPVLDEAGFAVLLDQGPDAAR 720 >gi|118581474|ref|YP_902724.1| DNA ligase, NAD-dependent [Pelobacter propionicus DSM 2379] gi|166216225|sp|A1ATJ6|DNLJ_PELPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|118504184|gb|ABL00667.1| DNA ligase, NAD-dependent [Pelobacter propionicus DSM 2379] Length = 704 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 273/725 (37%), Positives = 414/725 (57%), Gaps = 30/725 (4%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKP--IILDSEYDALKRRCDAIAHAF 62 Q P + + + L Q I++++ YY+ P I D EYD L + + F Sbjct: 2 QNSPTTEQTKNIVAERIQELRQLIAHNNRLYYENIPPRREIHDYEYDELFKELQELESRF 61 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P+ + + P +GG ++ KV HS+P LS+E + + + I + K D Sbjct: 62 PEF---QSADSPTQIVGGSVSEGFKKVQHSVPMLSIEN-KPVTKMLSEVRSIIKEL-KDD 116 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 SI EPKIDG +IRYEK + V AA RGDG GED++ + +I IP++L L+ P Sbjct: 117 AISIDIVAEPKIDGLSCSIRYEKHQLVRAATRGDGLEGEDITVNVHSISEIPKILPLDAP 176 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 E+IE+RGEVY+S +DF + +G KP NPRNAA+G LR+L+P+ +R L FF + Sbjct: 177 EVIEIRGEVYMSNSDFKQYTAQQNKIGEKPPENPRNAAAGSLRQLDPSVTASRPLRFFAY 236 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G+ S FAK Q++ LQ +R GF V + +R + + SY+ EM+ RS L + IDG Sbjct: 237 AWGEISNSFAKSQWDALQTLRGWGFKVCDDIRLLYSSDELNSYFEEMQERRSELDFTIDG 296 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYK++ SLQ+++G+ R+PRW + KF ++ T L +I I +GR+G LTPVA L PV Sbjct: 297 IVYKLNSLSLQERVGQTNRAPRWAAAQKFPPEKRETLLQNITISVGRSGALTPVAELLPV 356 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G ++NATLHN+D ++ +D R+ D ++V+RAG+VIP+VV +++ +R Sbjct: 357 RLLGTTVSNATLHNQDEVEC-----------KDFRIDDTIVVQRAGDVIPQVVSVVIEKR 405 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 + PF FPS CP+C S+ VR+ A +CTGGL C AQ LERLKHFVSRDAF Sbjct: 406 LSGSIPFVFPSACPVCGSKAVREPRE------AVWKCTGGLTCPAQSLERLKHFVSRDAF 459 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN-----ILGFGDVSVT 536 NI+GLG++ ++ F+ A + I L E G+G++S Sbjct: 460 NIDGLGEKNIELFYNKGLLASPVDIFRLEEILSPPLLWQQKPSEFKPLQEWDGWGELSAN 519 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 NL+ +I ++ I+L RFI++LGI VG A+ LA Y+S N+ + ++ + Sbjct: 520 NLFRAIRTKQKITLYRFIYALGIPKVGEVTAKILADNYVSLDNWQSSMLKAAERESECYQ 579 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 LI + +G ++A IV F+ NI +++L +S +SS I K +VFTG Sbjct: 580 HLISIDGIGSVVADEIVSFFAEAHNIQVLDSLKNYLSVEDFTKPAIISSNISGKIVVFTG 639 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 L+K R A+ + GA V+ +SRKTDI+I G +PGSKL KAQ+LG+KI++E+++ Sbjct: 640 ELEKRSRKAAKIEAEKFGAKVATDVSRKTDIVIAGTDPGSKLRKAQELGIKILSEDEWEH 699 Query: 717 LLQQY 721 L+ + Sbjct: 700 LINEK 704 >gi|209527955|ref|ZP_03276440.1| DNA ligase, NAD-dependent [Arthrospira maxima CS-328] gi|209491614|gb|EDZ91984.1| DNA ligase, NAD-dependent [Arthrospira maxima CS-328] Length = 680 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 212/698 (30%), Positives = 344/698 (49%), Gaps = 49/698 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++L L + YY P + D YD L R + +P+L P+ P Sbjct: 12 EISQKLEQLRLTVQRASYAYYVLDAPTMEDGVYDRLYRELQELETQYPELI---SPDSPT 68 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G + V H+I SLE +N+ +L+ + + RF + E KID Sbjct: 69 QRVGEKPATQFESVRHNISLYSLENAFNMAELQAWDEKWRRFLGNWAAEDNNYICELKID 128 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYIS 194 G+ I + Y G V A RGDG +GED++ I+ I +IP L N P ++EVRGE ++ Sbjct: 129 GSAIALTYHDGILVRGATRGDGVTGEDITQNIKTIRSIPLKLHLDNPPPVVEVRGEAFLY 188 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKG 253 F +N E G +ANPRNAA+G LR+L+ R+L+FF + L Sbjct: 189 NRIFAEINQERQKNGEPLFANPRNAAAGTLRQLDSRIVAARHLDFFAYTL-HLDSPNLHD 247 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ L+ + +GF VN + + + Y+N ++ R LPY DG+V K++ SLQK Sbjct: 248 HWDCLELLPKMGFKVNPNRQLCQSLLEVQQYFNTWETQRRELPYMTDGVVVKLNSLSLQK 307 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 QLGE + PRW I+ K+ ++ T+++ + Q+GRTG LTPVA LEP+ + G + ATL Sbjct: 308 QLGETRKFPRWAIALKYPAEELPTKIISVTFQVGRTGALTPVAELEPIQLAGTTVKRATL 367 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN+D + L D+ +GD V+V++AGE+IP+VV ++ + R A+ + P+ Sbjct: 368 HNQDRLTEL-----------DLHIGDTVIVRKAGEIIPEVVRVLPDLRPTGAKLVTMPTH 416 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C VV+ A RC +C A + H+ R A +I G+G++ + Sbjct: 417 CPECGETVVKTPPE------AVTRCINS-SCPAIVRGSIIHWCGRRALDINGIGEKLVQQ 469 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 +++ +R AD++ L Q + + G S + ++I + R Sbjct: 470 LVETQ----LVRSVADLYHLNMDQLVA------LERQGQKSAQKILEAIAASKKQPWHRV 519 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 ++ LGIR+VG A LA+ + S Q+ A + + V +G IA ++ Sbjct: 520 LYGLGIRYVGEVNAELLAQNFPSCQSLAAASSA----------QIEGVYGIGAEIATSVY 569 Query: 614 EFYQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 +++QNP NI + L + PS + K V TGTL + R +A+ Sbjct: 570 QWFQNPANISLCDRLEQSGLQLASVPSTALKSTPQAQPFAGKTFVLTGTLPTLTREEAKS 629 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + + G V+ +++K D +++GD PGSKL KAQ LG+ Sbjct: 630 IIEKAGGKVTNSVTQKVDYLLLGDKPGSKLAKAQNLGI 667 >gi|162448184|ref|YP_001621316.1| DNA ligase [Acholeplasma laidlawii PG-8A] gi|190359222|sp|A9NHW0|DNLJ_ACHLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|161986291|gb|ABX81940.1| DNA ligase, NAD-dependent [Acholeplasma laidlawii PG-8A] Length = 659 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 227/705 (32%), Positives = 364/705 (51%), Gaps = 47/705 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + L ++I+ + Y+ +PII D YD L R + +P+ +D P Sbjct: 2 DIQTRIKELRKQINEANYLYHTKDQPIISDFVYDGLMRELIELETKYPEY---DDETSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 KIGG + + K TH++P +SL I+N E+L+ F RI + + FT E KID Sbjct: 59 KKIGGVVLDAFKKHTHTVPMMSLSNIFNKEELKVFYDRIQKVI-----PNTSFTTELKID 113 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +T+ YEKG F AA RG+G GED++ ++ I T+P L L+ P IEVRGE+Y+S Sbjct: 114 GLAVTLIYEKGIFKKAATRGNGVVGEDITENVKTIKTLP--LQLSKPLDIEVRGEIYMSH 171 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 F +N E + NPRNAA+G +R+L+ + + + F Q Sbjct: 172 KTFKEVNLERANSNLDLFVNPRNAAAGTVRQLDSKVVAKRRLDLFTYTVVGASNFNSTQK 231 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L+ + LGFPVN + + + + +R TLPYD DG+V KV++F + + Sbjct: 232 ETLEFLSELGFPVNPHYKLVDNLDALSDAIDNYDILRKTLPYDTDGVVIKVNQFEHYETI 291 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+ P++ ++KF ++ T++ DI Q+GRTG++TPVA L PV I G+L++ ATLHN Sbjct: 292 GYTAKYPKYAGAYKFEAEKQITKVEDIIFQVGRTGVITPVAVLTPVFISGSLVSRATLHN 351 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 EDYI +DIR+ D+VLV +AGE+IP+V+++++ R + PF CP Sbjct: 352 EDYI-----------LNKDIRIDDQVLVHKAGEIIPEVIEVVLGSRT-NQAPFEMVKHCP 399 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C+S +VR C + + L HF SR A +I+ LG++ ++ Sbjct: 400 ACESNLVRKQGEAD-------YYCANDNCPGKNVFGLIHFASRAAMDIDTLGEKVVELLH 452 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 ++ DI+ L + ++E + GFG V L ++I + +L+R IF Sbjct: 453 DQT----YLQTIPDIYKLHTFKD----QLEELPGFGKKKVEKLLNAIEASKMQTLDRLIF 504 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGI++VGA++A++L +Y S A + LI++P +G IA ++ + Sbjct: 505 GLGIKNVGAKVAKTLLNHYPSITLLADA----------KYEDLIQIPDIGPEIADSVTTY 554 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + N N +E L + + + K V TGTL R +A + + +LG Sbjct: 555 FSNESNQHMLEELKNLGLQMTYKIDVVTTHPFNGKTFVVTGTLDDFSRTEASDIIEKLGG 614 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 VS +S+KTD ++ G GSKL KA +LG+++M+E F + + Sbjct: 615 KVSGSVSKKTDYVLAGKEAGSKLTKALELGIEVMDEATFKVKINE 659 >gi|153806306|ref|ZP_01958974.1| hypothetical protein BACCAC_00565 [Bacteroides caccae ATCC 43185] gi|149130983|gb|EDM22189.1| hypothetical protein BACCAC_00565 [Bacteroides caccae ATCC 43185] Length = 666 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 222/708 (31%), Positives = 347/708 (49%), Gaps = 49/708 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 ++++ L E+ H+ YY + P I D E+D R + A P+ D N P Sbjct: 2 DIKEKIEGLRAELHRHNYNYYVLNAPEISDKEFDEKIRELQDLEQAHPEYK---DENSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G ++N + +V H P LSL ++ ++ F R+ + + E K D Sbjct: 59 MRVGSDINKNFTQVAHKYPMLSLANTYSEAEVTDFYDRVRKAL----NEDFEICCEMKYD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194 GT I++ YE GK V A RGDG G+DV+ ++ I +IP VL N P E+RGE+ + Sbjct: 115 GTSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPSSFEIRGEILMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 F LN E A +ANPRNAASG L+ N + + G Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPCDGH 234 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 YE LQ+ GF +++ R+ T + + N R LP DG+V KV+ QK Sbjct: 235 YENLQEAAKWGFKISDLTRKCKTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKN 294 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LH Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLH 354 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSF 433 N D I+GL D+ +GD V V++ GE+IPK+ + + R + F + Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSSMLGEKVRFITN 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S++VR AAH C AC Q +++HF+SR A NI+GLG + +D Sbjct: 404 CPECNSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDM 457 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F++ I AD++ L + G+ S N+ I + + + ER Sbjct: 458 FYR----LGLIHNTADLYDLSVENIKG------LDRMGEKSAENIITGIAQSKAVPFERV 507 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGIR VG +A+ +AK + + Q D +LI + +G+ IAQ+I+ Sbjct: 508 IFALGIRFVGETVAKKIAKSFENIDELQQA----------DLETLISIDEIGEKIAQSIL 557 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVT 671 ++ N N + L E ++ + +V +G R + +E + Sbjct: 558 SYFANESNCELINRLKAAGLQLYRTEEDLSEYTDKLAGQSIVISGVFTHHSRDEYKELIE 617 Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G +S KT I+ G+N G +KLEKA++LG+ I++E++FL L+ Sbjct: 618 KNGGKNVGSISAKTSFILAGENMGPAKLEKAKKLGITILSEDEFLKLI 665 >gi|256844676|ref|ZP_05550161.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 125-2-CHN] gi|256613217|gb|EEU18421.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 125-2-CHN] Length = 668 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 208/715 (29%), Positives = 363/715 (50%), Gaps = 51/715 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + +++++A+KE +SL ++++ + YY P + D+ YD R + FP++ Sbjct: 1 MAEITLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIV-- 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ ++GG+++ KV H IP LS+ +++ +L+ F R+ + + + + Sbjct: 59 -TPDSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRMQKLVG----HPVEY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ YE GK V A+ RG+G+ GEDV+A + I IP+ L + EVR Sbjct: 114 NVELKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPEPL--TTEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+SK F LN E G +ANPRNAA+G LR+L+P + Sbjct: 172 GECYMSKEAFAKLNAEREEQGLAVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ +QKM LGF N R+ T + ++ +E + R++L Y IDG+V K+D+ Sbjct: 232 EEITSQHQAIQKMHDLGFHTNETGRKLKTLDEVFAFIDEYTAKRNSLTYGIDGIVLKIDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 ++++LG + PRW I++KF ++ T + DI +GRTG++TP A ++PV + G + Sbjct: 292 LGIEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A+LHN DY+ + IR+GD V + +AG++IP++ ++++ +R D+ + Sbjct: 352 ARASLHNPDYL-----------NEKGIRIGDTVKLHKAGDIIPEISEVVMAKRSADSVAY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C ++V + A RC +C AQ E + HF SR A NI GLG Sbjct: 401 QIPTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + + AD++ L + F + S+ NL +++ + Sbjct: 454 KIVKQLIAKD----LVHNVADLYHLTADDL------AQLDHFKEKSINNLLTALDNSKQN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E I LGI HVGA+ AR +A+ + + D + + +G I Sbjct: 504 SVELLITGLGIDHVGAKAARLIAQKFKNLAKIMSL----------DVQEIASIDTIGMTI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI----GRHEKNVSSEIENKKLVFTGTLQKIQRH 664 A+++ ++ P ++ L + + + ++K +V TG L+ R Sbjct: 554 AESMTTYFAQPEAQKVIDELRESGLNMDYLGADEPAEIEDNPFKDKTVVLTGKLEHYTRS 613 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + + LGA V+ +S KTD +I G + GSK KAQ LGV ++ EE+ + ++ Sbjct: 614 EFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTEEEAIAQIE 668 >gi|227877013|ref|ZP_03995105.1| DNA ligase [Lactobacillus crispatus JV-V01] gi|256850560|ref|ZP_05555986.1| DNA ligase [Lactobacillus crispatus MV-1A-US] gi|227863384|gb|EEJ70811.1| DNA ligase [Lactobacillus crispatus JV-V01] gi|256712583|gb|EEU27578.1| DNA ligase [Lactobacillus crispatus MV-1A-US] Length = 668 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 207/715 (28%), Positives = 363/715 (50%), Gaps = 51/715 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + +++++A+KE +SL ++++ + YY P + D+ YD R + FP++ Sbjct: 1 MAEITLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIV-- 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ ++GG+++ KV H IP LS+ +++ +L+ F R+ + + + + Sbjct: 59 -TPDSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRMQKLVG----HPVEY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ YE GK V A+ RG+G+ GEDV+A + I IP+ L + EVR Sbjct: 114 NVELKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPEPL--TTEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+SK F LN E G +ANPRNAA+G LR+L+P + Sbjct: 172 GECYMSKEAFAKLNAEREEQGLAVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ +QKM LGF N R+ T + ++ +E + R++L Y IDG+V K+D+ Sbjct: 232 EEITSQHQAIQKMHDLGFHTNETGRKLKTLDEVFAFIDEYTAKRNSLTYGIDGIVLKIDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 ++++LG + PRW I++KF ++ T + DI +GRTG++TP A ++PV + G + Sbjct: 292 LGIEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A+LHN DY+ + +R+GD V + +AG++IP++ ++++ +R D+ + Sbjct: 352 ARASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVMAKRPADSVAY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C ++V + A RC +C AQ E + HF SR A NI GLG Sbjct: 401 QIPTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + + AD++ L + F + S+ NL +++ + Sbjct: 454 KIVKQLIAKD----LVHNVADLYHLTADDL------AQLDHFKEKSINNLLTALDNSKQN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E I LGI HVGA+ AR +A+ + + D + + +G I Sbjct: 504 SVELLITGLGIDHVGAKAARLIAQKFKNLAKIMSL----------DVQEIASIDTIGMTI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI----GRHEKNVSSEIENKKLVFTGTLQKIQRH 664 A+++ ++ P ++ L + + + ++K +V TG L+ R Sbjct: 554 AESMTTYFAQPEAQKVIDELRESGLNMDYLGADEPAEIEDNPFKDKTVVLTGKLEHYTRS 613 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + + LGA V+ +S KTD +I G + GSK KAQ LGV ++ EE+ + ++ Sbjct: 614 EFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTEEEAIAQIE 668 >gi|307609752|emb|CBW99264.1| DNA ligase [Legionella pneumophila 130b] Length = 650 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 237/690 (34%), Positives = 366/690 (53%), Gaps = 46/690 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + ++ + +L+++I +D YY +P++ D+EYD + +P P Sbjct: 1 MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++ G + + V H P LSL ++ ++L+ FI R + + + F E Sbjct: 58 DSPTQRVSGTPSDAFMPVAHKQPMLSLSNVFTTDELKAFIKRAIEKLDE-PNQQLVFACE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG + + YE G +AA RGDG GE+++A I+ I ++P N P++IEVRGE Sbjct: 117 PKLDGLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGE 176 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG-KTSE 248 VYI K DF A N +G K +ANPRNAA+G LR+LNP R L + +G+G Sbjct: 177 VYIPKADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISANRPLAIYCYGIGAFEDY 236 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E L ++ GF V+ R+A G + YY M + R+ LP++IDG+VYK+D Sbjct: 237 KLPNSHLEQLNLLKEFGFRVSPETRRAVGIEGCLDYYQYMLAKRNQLPFEIDGVVYKIDS 296 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 SLQ+QLG +R+PR+ +HKF + TRL+ +D Q+GRTG +TPVARLEPV++GG + Sbjct: 297 ISLQQQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTV 356 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I +DIR+GD V+++RAG+VIP+VV +I+ +R +A+ Sbjct: 357 SNATLHNFDEITR-----------KDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARMI 405 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP+C S VVR+ + A RC GGL C AQ + HF SR A IEGLG Sbjct: 406 ELPKNCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGS 459 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 +D + AD++ L + ++ G+ S NL ++ K + Sbjct: 460 VLIDQLVDE----GIVHHLADLYEL------DLQTLASLPRMGEKSAKNLLSALEKSKKT 509 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + RF+++LGIR +G AR LA++Y + L+ + +G + Sbjct: 510 TFNRFLYALGIREIGEVGARVLAEHYCDVEGLKAAT----------IEELMTLNDIGPVA 559 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A +V F+ N+ ++ LLK P + + N + K +V TGTL + R +A Sbjct: 560 ASHVVHFFAQAHNLEVIDRLLKLGIHWPKSEKIQVNQQNPFFGKTVVLTGTLSTMGREEA 619 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696 + + LGA VS +S KTD ++ G GS Sbjct: 620 KAKLLALGAKVSGSVSSKTDYVVAGSEAGS 649 >gi|258508011|ref|YP_003170762.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus GG] gi|257147938|emb|CAR86911.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus GG] gi|259649339|dbj|BAI41501.1| DNA ligase [Lactobacillus rhamnosus GG] Length = 674 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 243/716 (33%), Positives = 372/716 (51%), Gaps = 51/716 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P ++E+A E++ L ++++ YY P + D+ YD R A+ AFP L Sbjct: 5 PAAQFTLEEAEAEIAKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAFPKLV- 63 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++G +N KV H IP LS+ +++ E+L ++ R+ +++ Sbjct: 64 --TPDSPTQQVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARMQANVG----HAVD 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + +E KIDG +++ YE G+ V + RGDG+ GEDV+ + I ++P +L P +EV Sbjct: 118 YNVELKIDGLALSLIYENGRLVQGSTRGDGNVGEDVTKNVLTIASVP--KTLKRPLSLEV 175 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGE Y+ K F LN A G P+ANPRNAA+G LR+LNP R L+ F++ L Sbjct: 176 RGECYMPKAAFAKLNARKEADGDTPFANPRNAAAGSLRQLNPKITAGRELDTFIYTLIDA 235 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 K Q+E + M+ LGF N A+ I +Y + S R LPY IDG+V KV Sbjct: 236 DRFNVKTQHEAIAFMQDLGFTTNPSSEVASDMQAIDAYITKYTSDRDALPYGIDGIVLKV 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ +LQ QLG + PRW I++KF ++A T + DI +GRTG++TP A ++PV + G Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAKTVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATLHN D I+ +DIR+GD V++ +AG++IP+V ++V +R + Sbjct: 356 TVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVKKRPANTP 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P P CP C ++V + A RC + C AQ E+L HF SR+A NI+GL Sbjct: 405 PAPIPEKCPSCGQKLVHLDDE------VALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + + + + AD++ L E + F + S+ NL ++IN R Sbjct: 458 GPKIIAQLQAKK----LVTDVADLYRLTATDL------EKLDKFKEKSINNLLNAINNSR 507 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 S+ER IF LGIRHVG + AR LA+++ S D + +P +G Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGSLDELMAA----------DQDQVAAIPNIGP 557 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 IA+A+V +++ VE L + S + K +V TG + R Sbjct: 558 TIAEAVVTYFKTDTVKKLVEQLRSAGVNLRYTGPTRPAVSDSFVSGKTVVITGKFAEFSR 617 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + + QLGA V+ +S+KTD++I GD GSKL KAQ L V IM+E L L+ Sbjct: 618 PELTKRLEQLGAKVTGSVSKKTDLVIAGDAAGSKLTKAQDLNVPIMDETALLTNLK 673 >gi|227488027|ref|ZP_03918343.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum ATCC 51867] gi|227091889|gb|EEI27201.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum ATCC 51867] Length = 679 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 209/708 (29%), Positives = 344/708 (48%), Gaps = 50/708 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 L ++ YH D YY P I D+E+D L + + P L P+ P ++ Sbjct: 7 ARWEELAAQVRYHRDKYYN-GTPEITDAEFDVLFSQLQQLEAEHPGL---RAPDSPTLEV 62 Query: 79 GGEMNLS--LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 G + H SL+ +++ ++L +++ R S +++E KIDG Sbjct: 63 GAPSPEGSSFENIAHLERMYSLDNVFSKDELEQWLIRT---------PSDTYSVELKIDG 113 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGEVY 192 I + Y G+ AA RGDG GE+++A R I IP L IP ++EVRGEVY Sbjct: 114 VSIDLVYRDGELATAATRGDGTVGEEITANARMITGIPDHLQENDAFPIPSVLEVRGEVY 173 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFA 251 I+ +DF +N++ +KP+ANPRNAA+G +R+ + R L HG+G I Sbjct: 174 IAIDDFPLVNEQRQLENKKPFANPRNAAAGSMRQKDPQAVKKRKLTLVCHGIGAAEGISV 233 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + Q E + + G PV+ ++ + + R +++DG+V KVD Sbjct: 234 ESQTEAYKALAAFGLPVSEYTTVVHSHEEVHEMVEKWADHRHDAVFEMDGMVVKVDNREQ 293 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+ LG +R+PRW I++K+ ++A T+L+D+ + +GRTG +TP A +EPV + G+ + A Sbjct: 294 QRALGATSRAPRWAIAYKYPPEEAVTKLIDVRVGVGRTGRVTPFAIMEPVEVAGSTVEMA 353 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+ + + + +GD+V++++AGEVIP+V+ + + R +PF FP Sbjct: 354 TLHNQSEVNR-----------KGVLIGDQVVIRKAGEVIPEVLGPVADLRDGTERPFVFP 402 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C +++ + A RC +C Q RL++ R F+IE LG++ Sbjct: 403 TLCPQCGTKLA-----PAKEEDADWRCPNTRSCPGQLAGRLEYIAGRGVFDIEALGEKAA 457 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 ++ + AD+FTL + N G + + L + ++ L Sbjct: 458 ADLVRT----GILTDEADLFTLTEDDLLDSRVYTNSKGAVNAAGKKLIAGLKTQKETDLW 513 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R I L IRHVG AR+LA+ + S + L VG +IA + Sbjct: 514 RVITGLSIRHVGPTAARALAREFGSMDAIRKATE----------EELAATEGVGGVIAAS 563 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 IV+++ + V+A + + +E +V TG+L+ R A+E + Sbjct: 564 IVDWFSVDWHRAIVDAWAEAGVTMEDERGEAKEQTLEGLTIVVTGSLENYTRDGAKEAII 623 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + G S +S+KTD ++VG N GSK KA++LG I+NE+QF LL Sbjct: 624 ERGGKASGSVSKKTDYVVVGANAGSKAAKAEELGRPIINEQQFEELLA 671 >gi|111023430|ref|YP_706402.1| NAD-dependent DNA ligase LigA [Rhodococcus jostii RHA1] gi|123045472|sp|Q0S2J2|DNLJ_RHOSR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110822960|gb|ABG98244.1| DNA ligase (NAD+) [Rhodococcus jostii RHA1] Length = 696 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 223/708 (31%), Positives = 359/708 (50%), Gaps = 42/708 (5%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 R+ + L +E+ H YY PII D E+D L + + + +PDL P+ P Sbjct: 15 VREHWNELAEEVRQHQFRYYVRDAPIISDGEFDVLLGELNDLENQYPDL---RTPDSPTQ 71 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +GG + H LSL+ ++ ++LR +I+R+ ++ + + E KIDG Sbjct: 72 LVGGGFSTDFASADHLERMLSLDNVFATDELRTWISRVE----QETGPDLHYLCEVKIDG 127 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGEVY 192 + + YE G+ AA RGDG +GE+V+ R I IP L+ IP ++EVRGEV+ Sbjct: 128 VALNLVYENGRLDRAATRGDGRTGEEVTLNARTIDDIPEKLTGTDEYPIPALLEVRGEVF 187 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 DF ALN ++ G+ P+ANPRN+A+G LR+ NP R L HGLG++ Sbjct: 188 FRLEDFAALNAALVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGLGRSEGFEP 247 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 QY+ + G PV+ + +V R + ++IDGLV KVDE SL Sbjct: 248 VSQYDAYTALAAWGLPVSTHTARVTGADAVVDRVQYWGEHRHDVEHEIDGLVVKVDETSL 307 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I++K+ ++A+T+LLDI + +GRTG +TP A +EPV + G+ ++ A Sbjct: 308 QRRLGSTSRAPRWAIAYKYPPEEATTKLLDIRVNVGRTGRVTPFAYMEPVTVAGSTVSLA 367 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN +K + + +GD V++++AG+VIP+V+ +V+ R D F P Sbjct: 368 TLHNGSEVKR-----------KGVLIGDTVVLRKAGDVIPEVLGPVVDARTGDEYEFVMP 416 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C + + + A RC C AQ ER+ H R AF+IE LG + Sbjct: 417 THCPECDTPLA-----PAKEGDADIRCPNQQYCPAQLRERVFHVAGRGAFDIEVLGYEAA 471 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 +++ I D+F+L T+ G + L D+++ ++ L Sbjct: 472 TSLLEAKA----IGDEGDLFSLTEDDLLKTSLFRTKAGGLSANGRRLLDNLDSAKDKPLW 527 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R + +L IRHVG AR+LA + S + L V VG IA A Sbjct: 528 RVLVALSIRHVGPTAARALAGEFGSLARIRES----------SVEELAAVDGVGGTIAAA 577 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 + E++ + VE ++++ +E +V TG+L+ R +A+E + Sbjct: 578 VAEWFGVDWHQQIVEKWSAAGVRMEDERDESIPRNLEGLSIVVTGSLETFSRDQAKEAIL 637 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G + +S+KT ++VG++PGSK +KA +LGV +++E+ F LL+ Sbjct: 638 IRGGKAAGSVSKKTAFVVVGESPGSKHDKAVELGVPVLDEDGFRRLLE 685 >gi|163782033|ref|ZP_02177032.1| D-tyrosyl-tRNA deacylase [Hydrogenivirga sp. 128-5-R1-1] gi|159882565|gb|EDP76070.1| D-tyrosyl-tRNA deacylase [Hydrogenivirga sp. 128-5-R1-1] Length = 715 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 235/715 (32%), Positives = 374/715 (52%), Gaps = 52/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 E+A++ + L + I+YHD YY + P+I D EYD L R + +P+L P+ Sbjct: 29 KEEAQEYVQELREVINYHDYKYYVQASPVISDYEYDQLFRALRDLEKKYPELI---TPDS 85 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++ E+ + V H P LSL+ + E+LR F R+ + +++EPK Sbjct: 86 PTQRVASEITGAFPTVRHYTPMLSLDNAYTEEELRDFDRRVRELTGLDV---VEYSVEPK 142 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEV 191 DG I + Y FV A RGDG +GED++ +R + TIP + I IE+RGEV Sbjct: 143 YDGAGIALLYRDDLFVRGATRGDGETGEDITNNLRTVRTIPLKAEFSRFGIRLIELRGEV 202 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD---ITRYLNFFVHGLGKTSE 248 I++ +F +N+E + G P+ANPRNAA+G +R NP + + + Sbjct: 203 LINREEFRKMNEERLEEGLPPFANPRNAAAGSIRLQNPAEVAKRKLDAVVYQVSYVEPES 262 Query: 249 IFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 YE ++ + LGF ++ ++ Y E + R PY+IDG+V KV+ Sbjct: 263 RHPNTHYEAIEMLHLLGFKTPFPDMKLCKGIDEVIEYCREWEEKREEYPYEIDGMVVKVN 322 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + LG + PRW I+ KF KQA+T+L+D+ Q+GR G +TPV +LEPV IGG + Sbjct: 323 RKEYYEVLGFTSHHPRWAIAFKFKPKQATTKLIDVVFQVGRVGTITPVGKLEPVEIGGVV 382 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +++ +L NED+I+ +DIR+GD VLV+RAG+VIP VV++I R D P Sbjct: 383 VSSVSLFNEDFIR-----------EKDIRIGDLVLVERAGDVIPYVVEVIKEARDGDEVP 431 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 FP CP C S++V+ A RC ++C AQ + RLKH+ SR+A +I GLG Sbjct: 432 IEFPDRCPSCGSKLVKLPGE------VAWRCIN-ISCPAQVVLRLKHWGSREAMDIRGLG 484 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ ++ D++ L+ + GF + S NLY++I + +N Sbjct: 485 EATSKALYEK----GLVKDVGDLYYLKVVDLMK------LPGFAEKSAMNLYNAIQESKN 534 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 L+R ++ LGIR+VG A+ L++ S + L + +GD+ Sbjct: 535 RGLDRVLYGLGIRYVGLTTAKKLSQVIDSIWDLRD----------MPVEKLEAIEGIGDV 584 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +A++I EF+ N+ +E L + + R + ++ VFTGTL+ R +A Sbjct: 585 VARSIKEFFSREENVKVIEKLDRAGV-KLRRTKLEKEGPLKGMVFVFTGTLRCCSRERAG 643 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQY 721 E V LG S ++ KT ++VG+ PG +KL +A+QLG+K++NEE FL +++ Y Sbjct: 644 ELVESLGGTFSNSVTSKTTYLVVGEEPGRTKLRRAEQLGIKLLNEEDFLNMVKDY 698 >gi|319937197|ref|ZP_08011604.1| DNA ligase [Coprobacillus sp. 29_1] gi|319807563|gb|EFW04156.1| DNA ligase [Coprobacillus sp. 29_1] Length = 662 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 236/701 (33%), Positives = 379/701 (54%), Gaps = 49/701 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L +++ ++ ++ YY P + D EYD L + AI + P+ + + P ++ Sbjct: 4 ERLIEIKKLLNEYNYQYYVLDNPSVSDQEYDRLMQELQAIENQHPEWLTA---DSPSQRV 60 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ S K+TH LSL I+N ++L F R+ ++ + E KIDG Sbjct: 61 GGQVLDSFTKITHERMMLSLGNIFNEDELMAFDERVRE-----TYPNVEYVCELKIDGLA 115 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 +++ Y G+ YAA RGDG GED++ ++ I +IP L+++ EVRGE+++ K F Sbjct: 116 VSLVYADGRLDYAATRGDGTVGEDITHNVKTIKSIP--LTIDYDGDFEVRGEIFMPKKSF 173 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEM 257 LN+E G +ANPRNAA+G +R+L+ T R L+ F++ + +E+ E Sbjct: 174 NELNEERAKAGEALFANPRNAAAGSVRQLDSTIAAKRKLDAFLYMVPTATEVGCTTHKEA 233 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ LGF N ++ + ++ EM R TLPY+IDG+V KV+ Q +LG Sbjct: 234 LDYIKELGFKTNPMTHVSSDIQDVWAFIQEMTEKRDTLPYEIDGIVIKVNNLEEQVRLGY 293 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+ P+W I++KF ++ T+L DI IGRTG +TP A LEPV + G+ + ATLHNED Sbjct: 294 TAKVPKWAIAYKFPAEEVVTKLKDIIFTIGRTGQITPNAILEPVRVAGSTVQRATLHNED 353 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 +K +DIR+GD V+V++AG+VIP+VV + R + F +CP C Sbjct: 354 NVK-----------NKDIRIGDYVVVRKAGDVIPEVVRSLKERRDGSEEKFKMIEYCPHC 402 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 SR+VR N AA+ C C +++ER+ HF SRDA NIEGLG++ ++ F+ Sbjct: 403 GSRLVRKDNE------AAYYCLNDQ-CDFKKIERIIHFASRDAMNIEGLGEKIIEQFYN- 454 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 ++ DI+ L + +Q +I +I GFG S+ NL +I K + S+E+ +F L Sbjct: 455 ---LGFVKNIEDIYDLYKHEQ----EIMDIEGFGKKSMDNLVAAIEKSKENSMEKLLFGL 507 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI+ +GA++A +L+K + S + L+ + VG+ I Q+I F Sbjct: 508 GIKGIGAKMADNLSKEFKSIDAMLEASTA----------KLLSIKDVGETIVQSINHFRN 557 Query: 618 NPRNICAVEALLKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 +P ++ + L E S + + TGTL+ + R + ++Y+ +LGA Sbjct: 558 DPASLELLMNLKALGLNMNYLKETTLLQESIFNGQTVCITGTLELMTRKEMKDYLARLGA 617 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 V+ +S+ TD +I G + GSKLEKA QLGV ++ EE+F Sbjct: 618 NVTGSVSKNTDFLICGRDAGSKLEKANQLGVTVLTEEEFRK 658 >gi|259502571|ref|ZP_05745473.1| DNA ligase [Lactobacillus antri DSM 16041] gi|259169461|gb|EEW53956.1| DNA ligase [Lactobacillus antri DSM 16041] Length = 678 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 231/718 (32%), Positives = 379/718 (52%), Gaps = 48/718 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 P++ L++ A++E++ L Q+++ YY+ P + D YD +R + FP+L Sbjct: 5 TPVDQLTLAAAKQEIAPLRQQLTKWGREYYEQDNPSVEDYVYDRAYQRLVELEQRFPELK 64 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 S + P +GG L KVTH IP LS+ +++I++L F R + + Sbjct: 65 TS---DSPTQHVGGGPTGELTKVTHEIPMLSMGDVFSIDELMDFNQRQQD--NDDVNVTP 119 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 + LE KIDG +++ YE G+ V + RG+G+ GEDV+A + I ++P L + +E Sbjct: 120 EYNLELKIDGLSLSLVYENGRLVQGSTRGNGNIGEDVTANVMTIKSVPHQLPEPLS--LE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 RGE Y+ K F+ LN E A G +ANPRNAA+G LR+L+P R L F++ + + Sbjct: 178 FRGECYMPKESFVKLNQEREAAGLPIFANPRNAAAGSLRQLDPQVTARRDLATFMYYVPE 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 ++ + Q L +MR LGF VN R + I Y E + R L Y IDG+V K Sbjct: 238 YQKLGVRTQAAALNRMRELGFSVNPHNRVVRSRQEITDYIEEYTAQRDQLSYGIDGIVEK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ + LG + PRW I++KF ++ +T + +I +GRTG +TP A ++P+ + G Sbjct: 298 VNDLDTENALGNTVKVPRWEIAYKFPPEEQATVVREIVWTVGRTGNVTPTAVMDPIQLAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ A+LHN DY++ +DIR+GD V + +AG++IP++ + + +R D+ Sbjct: 358 TTVSRASLHNPDYLR-----------EKDIRLGDTVYLHKAGDIIPEISRVDLKKRPADS 406 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 QP+ P+ CP+C S +V A RC + C AQ E L HF SR+A NI+G Sbjct: 407 QPYQVPTTCPVCGSDLVHLDGE------VALRCVNPM-CPAQIKEGLAHFASRNAMNIDG 459 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG + + + + + AD+++L Q + + FGD S TNL SI Sbjct: 460 LGPKIIQQLWDKQ----LVHDVADLYSLTHDQLLT------LDKFGDKSATNLLTSIANS 509 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 RN S+ER +F LGIRHVGA+ AR + +++ + + +A +G Sbjct: 510 RNNSVERLLFGLGIRHVGAKAARLIMEHFQTLERLMAANAEEVAAV----------DGIG 559 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQR 663 I +++ ++ N + + V+ L G +SE +++V TG L+++ R Sbjct: 560 PTIGESVQTYFANEQVVTLVDELRAAGVNFDYHGASAPVAASEWNGRRVVLTGKLEELTR 619 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 A+ ++ GA V+ +S+KTDI+I G GSKL KAQ LG+ + +E +F +++ Sbjct: 620 TDAKNWLEAHGAKVTGSVSKKTDIVIAGTAAGSKLTKAQDLGITVWDEARFAQAMKEE 677 >gi|262047040|ref|ZP_06019999.1| DNA ligase, NAD-dependent [Lactobacillus crispatus MV-3A-US] gi|293381897|ref|ZP_06627865.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 214-1] gi|260572617|gb|EEX29178.1| DNA ligase, NAD-dependent [Lactobacillus crispatus MV-3A-US] gi|290921544|gb|EFD98578.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 214-1] Length = 668 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 206/715 (28%), Positives = 362/715 (50%), Gaps = 51/715 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + +++++A+KE +SL ++++ + YY P + D+ YD R + FP++ Sbjct: 1 MAEITLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIV-- 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ ++GG+++ KV H IP LS+ +++ +L+ F R+ + + + + Sbjct: 59 -TPDSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRMQKLVG----HPVEY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ YE GK V A+ RG+G+ GEDV+A + I IP+ L + EVR Sbjct: 114 NVELKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPEPL--TTEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+ K F LN E G +ANPRNAA+G LR+L+P + Sbjct: 172 GECYMGKEAFAKLNAEREEQGLVVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ +QKM LGF N R+ T + ++ +E + R++L Y IDG+V K+D+ Sbjct: 232 EEITSQHQAIQKMHDLGFHTNETGRKLKTLDEVFAFIDEYTAKRNSLTYGIDGIVLKIDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 ++++LG + PRW I++KF ++ T + DI +GRTG++TP A ++PV + G + Sbjct: 292 LGIEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A+LHN DY+ + +R+GD V + +AG++IP++ ++++ +R D+ + Sbjct: 352 ARASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVMAKRPADSVAY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C ++V + A RC +C AQ E + HF SR A NI GLG Sbjct: 401 QIPTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + + AD++ L + F + S+ NL +++ + Sbjct: 454 KIVKQLIAKD----LVHNVADLYHLTADDL------AQLDHFKEKSINNLLTALDNSKQN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E I LGI HVGA+ AR +A+ + + D + + +G I Sbjct: 504 SVELLITGLGIDHVGAKAARLIAQKFKNLAKIMSL----------DVQEIASIDTIGMTI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI----GRHEKNVSSEIENKKLVFTGTLQKIQRH 664 A+++ ++ P ++ L + + + ++K +V TG L+ R Sbjct: 554 AESMTTYFAQPEAQKVIDELRESGLNMDYLGADEPAEIEDNPFKDKTVVLTGKLEHYTRS 613 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + + LGA V+ +S KTD +I G + GSK KAQ LGV ++ EE+ + ++ Sbjct: 614 EFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTEEEAIAQIE 668 >gi|166216285|sp|Q03JF6|DNLJ_STRTD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 652 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 219/703 (31%), Positives = 359/703 (51%), Gaps = 55/703 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 K + L +++ + YY P + D+EYD L R + P+L ++ + P ++ Sbjct: 2 EKRMKELVDKLNQYAKEYYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQA---DSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F RI + + + E KIDG Sbjct: 59 VGGLVLDGFEKYQHEYPLYSLQDAFSREELDAFDKRIK-----SEFPNADYMAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y G A RGDG GE+++ ++ I IP L L+ P I VRGE Y+ + + Sbjct: 114 SISLTYVDGILQVGATRGDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAE 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NFFVHGLGKTSEIFAKGQY 255 F +N + G +ANPRNAA+G LR+L+ + FF G T + Q Sbjct: 172 FERINTQRQENGEAEFANPRNAAAGTLRQLDTKVVAERRLATFFYQEAGPTERLT---QN 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 ++L ++ LGF VN ++ I + + R L YDIDG+V KV+ ++Q++L Sbjct: 229 DVLNEVAELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDHLAYDIDGVVIKVNSLAMQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++PRW I++KF ++ +LL +D Q+GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPRWAIAYKFPAEEKEAKLLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 DYI +DIR+GD V+V +AG++IP V+ ++ ++R PS CP Sbjct: 349 VDYI-----------TEKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQE-AMPVPSQCP 396 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S ++ + A RC +C AQ E L HF SRDA NI G+G ++ F Sbjct: 397 SCGSGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNISGMGPSVVEKLF 449 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 K+E ++ ADI+ L + + GF + S LY +I + S E+ ++ Sbjct: 450 KAE----LVKEVADIYGLNSQDF------LQLEGFKEKSAEKLYAAIQASKENSAEKLLY 499 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIRHVGA++++ L + + + + A D ++ V +G++IA++I + Sbjct: 500 GLGIRHVGAKVSKQLLESFGTIKELASA----------DVQAIAAVDGLGEVIAKSIQRY 549 Query: 616 YQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + ++ L + + + K +V TG L+ ++R +A+ + LG Sbjct: 550 FAKEEAQVLLKELESYGVNLSYLGQKVTDDAILSGKTVVLTGKLEHLKRSEAKAKLEALG 609 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 A V+ +S+KTD+++ G + GSKLEKAQ LG+++ +E L L Sbjct: 610 AKVTGSVSKKTDLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL 652 >gi|291557760|emb|CBL34877.1| DNA ligase, NAD-dependent [Eubacterium siraeum V10Sc8a] Length = 660 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 231/710 (32%), Positives = 368/710 (51%), Gaps = 51/710 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + EQ + E L +E+ H+ YY P I D EYD L RR I P++ Sbjct: 1 MDKEQIKSEYEQLCREVEQHNFNYYVLDDPTIEDDEYDRLMRRIKEIEAENPEIV---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +GG + KVTH + SL+ +++ +L +F R+ + K + +E Sbjct: 58 SSPTQHVGGYAINTFEKVTHEVQMGSLQDVFSKGELYEFDERVKKAVGKAV-----YCVE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG +++ Y+ G F + RGDG GED++ ++ I +IP L+ IP IEVRGEV Sbjct: 113 PKIDGLSVSLEYKDGIFTRGSTRGDGFVGEDITKNLKTIKSIPMELNEKIP-FIEVRGEV 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+ K DF L + + +P NPRNAA+G LR+ + +R L+ FV L + Sbjct: 172 YMPKADFEKLVRKQLENDEQPAKNPRNAAAGSLRQKDSRVTASRGLDIFVFNLQRIEGRE 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L M+ LGF V +G + + VS E+ R + YDIDG V KVD F Sbjct: 232 LTCHSESLDYMKSLGFNVIDGYKTFDNIEDAVSRIMEIGENRQSYSYDIDGAVIKVDNFE 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 L+ +LG A+ P+W ++ K+ ++ T+LLDI+I +GRTG LTPVA EPV + G ++ Sbjct: 292 LRNELGSTAKVPKWAVAFKYPPEEKETKLLDIEINVGRTGALTPVAVFEPVWLAGTTVSR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A LHN+DYI +DIR+GD + V++AG++IP+VV + + +++PF Sbjct: 352 AVLHNQDYIDS-----------KDIRIGDIIAVRKAGDIIPEVVRSVSHA--ENSEPFII 398 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C + R + A RC + C AQ L+ ++HF SR A NI+GLG+ Sbjct: 399 PHICPVCHGKAERAEDE------AVIRCVN-IDCPAQLLKNIEHFASRPAMNIDGLGEAV 451 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + ++ I AD+++LQ++ E + GF VS + L +I + S Sbjct: 452 VKQLVENR----LISTVADLYSLQQQDL------EMLPGFAKVSASKLIANIENSKANSP 501 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +R +F+LGI+ +G + A+ L K++ S + ++ + + V GDI+A Sbjct: 502 DRLLFALGIKGIGQKNAQLLMKHFGSIEKLSETLP----------EEISAVENFGDILAN 551 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I P +E L ++ + + ++ V TGTL + R +A+ + Sbjct: 552 NIFTALHEPHMTELIERLKSYGVNTVYQSDVKSD-KLAGLTFVITGTLPDMTRDEAKTLI 610 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 Q G S +SRKT ++ G+ GSKL KAQQLGV +++++Q + ++ + Sbjct: 611 EQNGGKCSGSVSRKTSYVLAGEEAGSKLTKAQQLGVTVISQQQLIEMIGE 660 >gi|29346304|ref|NP_809807.1| DNA ligase [Bacteroides thetaiotaomicron VPI-5482] gi|253568276|ref|ZP_04845687.1| DNA ligase [Bacteroides sp. 1_1_6] gi|81445157|sp|Q8A9C1|DNLJ_BACTN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|29338199|gb|AAO76001.1| DNA ligase [Bacteroides thetaiotaomicron VPI-5482] gi|251842349|gb|EES70429.1| DNA ligase [Bacteroides sp. 1_1_6] Length = 666 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 225/709 (31%), Positives = 354/709 (49%), Gaps = 51/709 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 ++++ L E+ H+ YY + P I D E+D R + A P+ D N P Sbjct: 2 DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLELAHPEYK---DENSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G ++N + +V H P LSL ++ ++ F R+ + + E K D Sbjct: 59 MRVGSDINKNFTQVAHKYPMLSLANTYSEGEVTDFYERVRKAL----NEDFEICCEMKYD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194 GT I++ YE GK V A RGDG G+DV+ ++ I +IP VL N P E+RGE+ + Sbjct: 115 GTSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPSSFEIRGEILMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 F LN E A +ANPRNAASG L+ N + + + G Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYLLGDNLPCDGH 234 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 YE LQ+ GF +++ R+ T + + N R LP DG+V KV+ QK Sbjct: 235 YENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKN 294 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+ V + G ++ A+LH Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDAVQLSGTVVKRASLH 354 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER-HPDAQPFSFPSF 433 N D I+GL D+ +GD V V++ GE+IPK+ + + R + F + Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFITN 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S+++R AAH C AC Q +++HF+SR A NI+GLG + +D Sbjct: 404 CPECGSKLIRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDM 457 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F++ I AD++ L+ + G+ S N+ I + + + ER Sbjct: 458 FYR----LGLIHNTADLYELKADDIKG------LDRMGEKSAENIITGIEQSKTVPFERV 507 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGIR VG +A+ +AK + Q D LI + +G+ IA++I+ Sbjct: 508 IFALGIRFVGETVAKKIAKSFGDIDELRQA----------DLEKLISIDEIGEKIARSIL 557 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYV 670 ++ N N V L KE + R E+++S ++ + +V +G R + ++ + Sbjct: 558 LYFSNESNRELVGRL-KEAGLQLYRTEEDMSGYTDKLAGQSIVISGVFTHHSRDEYKDLI 616 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G +S KT I+ GDN G +KLEKA++LGV I++E++FL L+ Sbjct: 617 EKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGVTILSEDEFLKLI 665 >gi|322373465|ref|ZP_08048001.1| DNA ligase, NAD-dependent [Streptococcus sp. C150] gi|321278507|gb|EFX55576.1| DNA ligase, NAD-dependent [Streptococcus sp. C150] Length = 652 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 216/701 (30%), Positives = 359/701 (51%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 K + L +++ + YY P + D+EYD L R A+ P+L ++ + P ++ Sbjct: 2 EKRMKELVAKLNQYAKEYYTEDNPSVSDAEYDKLYRELVALEAEHPELVQA---DSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + + E KIDG Sbjct: 59 VGGLVLDGFEKYQHEYPLYSLQDAFSREELDTFDKRVK-----DEFPNADYMAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y G A RGDG GE+++ ++ I IP L L+ P I VRGE Y+ + + Sbjct: 114 SISLTYVNGILQVGATRGDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAE 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N + G +ANPRNAA+G LR+L+ + + S Q ++ Sbjct: 172 FERINTQRQENGEAEFANPRNAAAGTLRQLDTKVV-AKRRLATFLYQEASPTERLTQNDV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ LGF VN ++ I + + R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LNEVTELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDYLAYDIDGVVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ LL +D Q+GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAELLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+ ++ ++R P P+ CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQE-PMEVPTQCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S ++ + A RC +C AQ E L HF SRDA NI G+G ++ F++ Sbjct: 399 GSGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNIAGMGPSVVEKLFQA 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 E ++ ADI+ L + + GF + S LY +I + S E+ ++ L Sbjct: 452 E----LVKDVADIYGLNSQDF------LQLEGFKEKSAEKLYAAIQTSKENSAEKLLYGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVGA++++ L + + + ++ A D ++ V +G++IA++I ++ Sbjct: 502 GIRHVGAKVSKQLLEAFETIKDLASA----------DVEAIAAVDGLGEVIAKSIQRYFV 551 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 ++ L +K + + K +V TG L+ ++R +A+ + LGA Sbjct: 552 KEEVKVLLKELESYGINMAYLGQKVADNAILSGKTVVLTGKLEHLKRSEAKAKLEALGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTD+++ G + GSKLEKAQ LG+ +++E L L Sbjct: 612 VTGSVSKKTDLVVAGSDAGSKLEKAQSLGIDVVDEAWLLNL 652 >gi|210621776|ref|ZP_03292805.1| hypothetical protein CLOHIR_00750 [Clostridium hiranonis DSM 13275] gi|210154540|gb|EEA85546.1| hypothetical protein CLOHIR_00750 [Clostridium hiranonis DSM 13275] Length = 678 Score = 517 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 223/710 (31%), Positives = 370/710 (52%), Gaps = 51/710 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E + ++ +L +I+YH D YY P I D EYD L + + P+ R Sbjct: 1 MGKEDIKLQIDNLIDKINYHSDKYYNQDTPEISDFEYDMLMKELIKLEAENPEFKRV--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P N++GG +VTH P LSL ++ EDLR F R+ D + + +E Sbjct: 58 DSPSNRVGGMALDKFDQVTHKNPMLSLSNAYSAEDLRDFDRRVREM----TDGDVEYVVE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG + I YE G+F AA RG+G GED+S + I +IP + I VRGEV Sbjct: 114 FKIDGLSVGITYENGEFKSAATRGNGIIGEDISKNVMTIKSIPLKIDDKRE--IIVRGEV 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NFFVHGLGKTSEI 249 YISK +F +N+ + +ANPRN A+G LR+L+ + F + Sbjct: 172 YISKENFEKVNEYQEEHDLQIFANPRNLAAGSLRQLDSKLTAKRPLDIFVFNLENINELD 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + L+ ++ LGF V+ + + ++ + R +L +DIDG+V KV+ Sbjct: 232 GIDTHSDSLEYLKKLGFSVSENYKICKSIDEVIEFIEYWTENRGSLKFDIDGMVVKVNNI 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + ++G A+SPRW I++KF ++ +++LDI++++GRTG +TP A LEPV + G ++ Sbjct: 292 EQRNEMGFTAKSPRWAIAYKFPAERKKSKILDIEVEVGRTGTITPTAILEPVRLAGTSVS 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHNED+I+ +DI++ D V+V++AG++IP++V+++ +R D + F Sbjct: 352 RATLHNEDFIR-----------EKDIKLFDHVIVQKAGDIIPQIVEVVKEDRTGDEKDFV 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 PS CP C VR AA +C ++C AQ + HFVSR+A +I+G+G+ Sbjct: 401 MPSVCPECGEPTVRLEGE------AAVKCIN-ISCPAQIRRGMIHFVSREAMDIDGMGES 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F K I+ +DI+ L++ Q + G+ S NL +I K ++ Sbjct: 454 IITLFLKE----GLIKDVSDIYYLKKEQIV------PLERMGEKSADNLIKAIEKSKSND 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R I LGIR VG + A+ LA + S D L ++ G I++ Sbjct: 504 LWRLINGLGIRFVGVKGAKILASNFSSLDEIINA----------DVERLQQLEEFGSIMS 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHKAQ 667 +++V+F++ +N+ ++ L + +K+ + E K+V TGTL ++R++A+ Sbjct: 554 ESVVKFFREEQNLAVIQKLKDAGVNTEAGEDKSEGIPQLFEGMKIVLTGTLPTLKRNQAK 613 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 E + G ++ +S+ T ++ G+ GSKL KA LG+K+++E+ FL L Sbjct: 614 EIIELRGGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEDMFLKL 663 >gi|289432483|ref|YP_003462356.1| DNA ligase, NAD-dependent [Dehalococcoides sp. GT] gi|288946203|gb|ADC73900.1| DNA ligase, NAD-dependent [Dehalococcoides sp. GT] Length = 680 Score = 517 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 242/714 (33%), Positives = 374/714 (52%), Gaps = 57/714 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E+ +L +EI+ H+ YY P I D++YD L R + A P+L P+ P K+G Sbjct: 10 EVENLRREINRHNQLYYVQDNPEISDAQYDTLISRLKELEEAHPELV---TPDSPTQKVG 66 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 E + V H P LSL ++ +L + R+ + + EPK+DG + Sbjct: 67 AEPLKAFGIVNHPYPLLSLANAFSDTELEAWYQRVKKLLG---NIPFQIDCEPKMDGLAV 123 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 + Y GKF A RGDG GE+++ +R I +IP N P + EVRGEVY+SKN F Sbjct: 124 ALTYRDGKFATGATRGDGFQGENITRNLRTIHSIPLNAEPNAPPVFEVRGEVYLSKNGFA 183 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYEM 257 LN E G P+ANPRNAA+G LR+L+P+ R L+ F++ LG + + + +++ Sbjct: 184 KLNRERADKGLPPFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYSEDSLLPDSHWQI 243 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L +GF +N R NT YY +M + R++LPYD DG+V+KVD SLQ +LG+ Sbjct: 244 LDYFSKIGFRINPLNRLVNTLEEAKEYYRQMAANRASLPYDADGVVFKVDSVSLQHRLGD 303 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 R PRW I++KF +Q TRL I I +GRTG L P A LEPVN+GG ++ A LHNED Sbjct: 304 VGREPRWAIAYKFPAEQVMTRLKKIGISVGRTGTLNPFAVLEPVNVGGVVVKQAALHNED 363 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF---- 433 I +DIR GD V+++RAGEVIP+VV ++++R+P+++PF Sbjct: 364 DI-----------LRKDIREGDTVIIQRAGEVIPEVVAPVLSKRNPESKPFRMEESLFNP 412 Query: 434 ------CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 CP+C + R A ++C AQ +L+HFVSR A +I G+G Sbjct: 413 NLNRPACPVCGGEIYRPAGE-------AMHYCANVSCPAQFERQLEHFVSRGAMDIRGIG 465 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + + ++ +D++ L +T + + G+ S N+ D+I + Sbjct: 466 ESLSVILAQQ----GLVKNVSDLYYL------TTADLLQLPRMGEKSADNIIDAIADSKT 515 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 L+R IF LG+RHVG E A L+++Y + A+ L +P +GD Sbjct: 516 RPLDRVIFGLGVRHVGNETATLLSRHYGNIWALAKTGLG----------ELQTIPDIGDK 565 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 IA +IV ++ +N+ + L + + + N + + V TG L+ R +A Sbjct: 566 IASSIVAYFSEEKNVAVIRRLEEAGVRLTSDQKPVNKNMPFSGMEFVVTGKLESFSREEA 625 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 QE + LG +++ T ++VG + GSKL KA+ +GVK ++E +F+ +L+Q Sbjct: 626 QEKIRSLGGTAKDNVTKATSYLVVGADAGSKLAKARSMGVKELSEREFINMLEQ 679 >gi|329954852|ref|ZP_08295869.1| DNA ligase [Bacteroides clarus YIT 12056] gi|328526956|gb|EGF53967.1| DNA ligase [Bacteroides clarus YIT 12056] Length = 665 Score = 517 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 222/707 (31%), Positives = 356/707 (50%), Gaps = 50/707 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++++ L ++ H+ YY + P I D E+D R + P+ +D N P Sbjct: 3 IKEKIDQLRADLHRHNYNYYVLNTPEISDKEFDDRMRELQELEKEHPEY---QDENSPTM 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G ++N + +V H P LSL ++ ++ F R+ + + E K DG Sbjct: 60 RVGSDLNKNFTQVAHKYPMLSLGNTYSENEVTDFYDRVKKAL----NEDFEICCELKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 T I++ YE GK V A RGDG G+DV+ ++ I TIP +L N P + E+RGE+ + Sbjct: 116 TSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLILHGNYPALFEIRGEILMPWE 175 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN E A +ANPRNAASG L+ N + E+ G YE Sbjct: 176 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGEELPCDGHYE 235 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 LQ GF ++ ++A++ + Y + R LP DG+V KV+ QK LG Sbjct: 236 NLQAAAGWGFKISEHTKKAHSLEEVFEYIRYWDTERKNLPVATDGIVLKVNSMRQQKNLG 295 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 FTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHNA 355 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCP 435 D I+GL D+ +GD V V++ GE+IPK+ + + R + F + CP Sbjct: 356 DIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARGMLIGEKVKFITHCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S+++R AAH C +C Q +++HF+SR A NI+GLG + +D F+ Sbjct: 405 ECGSKLIRYEGE------AAHYCPNETSCPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + I+ AD++ L + + G+ S N+ I + + ER +F Sbjct: 459 R----LGLIKNTADLYQLTTDDIKN------LDRMGEKSAENIIKGIEASKEVPFERVLF 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG +A+ +AK + + LI + +G+ IAQ+I+ + Sbjct: 509 ALGIRFVGETVAKKIAKSFNDIDELENA----------NLEKLINIDEIGEKIAQSILAY 558 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + NP N VE L K + R E+++S ++ + +V +G R + +E + + Sbjct: 559 FANPLNRELVERL-KSTGLQLYRREEDLSGYTDKLAGQSIVISGVFAHHSRDEYKELIEK 617 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G +S KT I+ G+N G +KLEKA +LG++IM+E++FL L+ Sbjct: 618 NGGKNVGSISAKTSFILAGENMGPAKLEKAHKLGIRIMSEDEFLALI 664 >gi|22298400|ref|NP_681647.1| NAD-dependent DNA ligase LigA [Thermosynechococcus elongatus BP-1] gi|81743454|sp|Q8DKK2|DNLJ_THEEB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|22294579|dbj|BAC08409.1| DNA ligase [Thermosynechococcus elongatus BP-1] Length = 689 Score = 517 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 236/725 (32%), Positives = 360/725 (49%), Gaps = 62/725 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 E + + L + + YY +PI+ D YD L R + A+P+ P+ Sbjct: 4 KEPPAERIQQLRRLLQRASYAYYALDQPIMEDEVYDQLYRELQELEAAYPEYI---TPDS 60 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW----QKKDDNSIFFT 129 P +IG V+H IP SLE + D+ + R R+W Q++ + Sbjct: 61 PTQRIGEAPVSQFESVSHRIPLYSLENAFTFADMVAWQERWQRYWRTLRQEEPLPPAEYV 120 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVR 188 E K+DG + + YE G V A RGDG GEDV++ +R I IP L+ N P ++EVR Sbjct: 121 CELKMDGVALALTYENGLLVRGATRGDGQRGEDVTSNVRTIRPIPLRLALDNPPPVVEVR 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL---- 243 GE ++ F LN E A G P+ANPRNAA+G LR+L+P R L+FF + L Sbjct: 181 GEAFLPLERFHQLNQERQAQGEPPFANPRNAAAGTLRQLDPRIVAQRQLDFFAYALHLPE 240 Query: 244 ------GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 G+ + Q ++L ++ LGF VN + +YY+ ++ R LPY Sbjct: 241 GGSVPLGENQAGEPQSQRQVLYALQHLGFRVNPHHADCPDLEAVKAYYDRWQTARHQLPY 300 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DG+V K+++ LQ+ LG + PR I+ K+ +QA T +L I +Q+GRTG LTPVA Sbjct: 301 LTDGIVVKLNDLKLQQTLGFTQKFPRGSIAWKYEPEQAITDVLAITVQVGRTGALTPVAE 360 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 L PV + G ++ ATLHN DYI L D+ +GD+V++ +AGE+IP++V + Sbjct: 361 LAPVQLAGTTVSRATLHNADYIAEL-----------DLHIGDKVVIHKAGEIIPEIVRVF 409 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 R P A+PF+ P+ CP C VVR N A RC C A +++H+ S Sbjct: 410 PELRPPTARPFTMPTACPECHQPVVRPANE------AVSRCGNPR-CPAIVRGQIRHWAS 462 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 RDA +I+GLG++ + E +R PAD++ L Q S + G S Sbjct: 463 RDALDIQGLGEKLVQQLVTKE----LVRTPADLYRLTAAQLLS------LERMGQKSADK 512 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L +I + R ++ LGIRHVG+ A+ LA + S + A Sbjct: 513 LLVAIANSKQQPWPRVLYGLGIRHVGSVNAQLLADRFKSVEELATAT----------VAD 562 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP-----SIGRHEKNVSSEIENKKL 652 L V +G+ IAQA+ E++Q+P + + L + + K+ Sbjct: 563 LCGVDGIGEEIAQAVQEWFQDPDHQSLIADLQALGLQLAAALHPAQKALTTEKSLNGKRF 622 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TGTL + R +A+ + + G VS +SR+TD ++VG+ GSKL +AQ+LG+ +NE Sbjct: 623 VITGTLPTLTREQAKALIQKHGGHVSESVSRQTDYLVVGEKAGSKLRRAQELGIPCINET 682 Query: 713 QFLFL 717 + + + Sbjct: 683 ELIQM 687 >gi|256847801|ref|ZP_05553246.1| DNA ligase, NAD-dependent [Lactobacillus coleohominis 101-4-CHN] gi|256715490|gb|EEU30466.1| DNA ligase, NAD-dependent [Lactobacillus coleohominis 101-4-CHN] Length = 674 Score = 517 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 236/716 (32%), Positives = 391/716 (54%), Gaps = 48/716 (6%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E +++ +A+KE+ L Q++ YY+ P + D YD +R + FP+L Sbjct: 4 EQITLAEAKKEIGPLRQQLIQWGKEYYEQDNPSVEDYVYDRQYQRLVELEARFPELV--- 60 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++GG+ + L KVTH IP LS+ ++++E+L F R D I + Sbjct: 61 TPDSPTQRVGGQTDTQLAKVTHDIPMLSMGDVFSVEELHAFNERQQSNL--LDTAPIEYD 118 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 LE KIDG +++ YE G+ + A+ RG+G GED++A I IP L + +E RG Sbjct: 119 LELKIDGLSLSLVYENGRLIQASTRGNGVIGEDITANAMTIKDIPHQLPEPLS--LEFRG 176 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 E Y+ K F+ LN E A G+ +ANPRNAA+G LR+L+P R L F++ + + + Sbjct: 177 ECYMPKESFVKLNAEREANGQPVFANPRNAAAGSLRQLDPQVTARRNLATFMYYVPEYEK 236 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + Q E LQ+MR LGF VN + ++ + Y E + R L Y IDG+V KV++ Sbjct: 237 LGVTTQEEALQRMRDLGFNVNPHNQTVHSEKELAEYIGEYTAQRDQLAYGIDGIVEKVND 296 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 LQ +LG + PRW I++KF ++ +T + +I +GRTG +TP A ++PV + G + Sbjct: 297 LHLQTKLGNTVKVPRWEIAYKFPPEEQATVVREIVWTVGRTGNVTPTAVMDPVQLAGTTV 356 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN DY++ +DIR+GD VL+ +AG++IP++ +I+ +R +++ + Sbjct: 357 SRASLHNPDYLR-----------EKDIRLGDTVLLHKAGDIIPEISRVIIEKRPVNSEEY 405 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP+C+S++V A RC + C AQ E L HF SR+A NI+GLG Sbjct: 406 QIPTQCPVCESKLVHLDGE------VALRCVNPM-CPAQIKEGLAHFASRNAMNIDGLGP 458 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + + +R AD++ L Q + + FG+ S TNL SI+ R+ Sbjct: 459 KIIEQLWDKK----LVRDFADLYRLNEEQLLT------LDKFGEKSATNLLTSIDNSRHN 508 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+ER +F LGIRHVGA++AR +A+ + S + + V +G I Sbjct: 509 SVERLLFGLGIRHVGAKVARLIAEKFGSLDAVMKA----------SAEDIAAVDTIGPTI 558 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKA 666 ++ ++ N + ++ L ++SSE +++V TG L R +A Sbjct: 559 GDSVATYFANTQVHQLIQELKDVQVNMEYTAASHVDLSSEWNGQRVVLTGKLAMFTRGEA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 +E++ + GA V+ +S+KT+++I G+ GSKL+KAQ LG+ I +E++F +++ N Sbjct: 619 KEWLEEHGAQVTGSVSKKTNLLIAGEKAGSKLQKAQGLGIPIWDEQRFSQAMKEDN 674 >gi|312984361|ref|ZP_07791702.1| DNA ligase, NAD-dependent [Lactobacillus crispatus CTV-05] gi|310894255|gb|EFQ43336.1| DNA ligase, NAD-dependent [Lactobacillus crispatus CTV-05] Length = 666 Score = 517 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 207/712 (29%), Positives = 361/712 (50%), Gaps = 51/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L++++A+KE +SL ++++ + YY P + D+ YD R + FP++ P Sbjct: 2 LTLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIV---TP 58 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GG+++ KV H IP LS+ +++ +L+ F R+ + + + + +E Sbjct: 59 DSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRMQKLVG----HPVEYNVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YE GK V A+ RG+G+ GEDV+A + I IP+ L + EVRGE Sbjct: 115 LKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPEPL--TTEVRGEC 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 Y+ K F LN E G +ANPRNAA+G LR+L+P + Sbjct: 173 YMGKEAFAKLNAEREEQGLVVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPEEI 232 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q++ +QKM LGF N R+ T + ++ +E + R++L Y IDG+V K+D+ + Sbjct: 233 TSQHQAIQKMHDLGFHTNETGRKLKTLDEVFAFIDEYTAKRNSLTYGIDGIVLKIDDLGI 292 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +++LG + PRW I++KF ++ T + DI +GRTG++TP A ++PV + G + A Sbjct: 293 EQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVARA 352 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHN DY+ + +R+GD V + +AG++IP++ ++++ +R D+ + P Sbjct: 353 SLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVMAKRPADSVAYQIP 401 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C ++V + A RC +C AQ E + HF SR A NI GLG + + Sbjct: 402 TTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGPKIV 454 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + + AD++ L + F + S+ NL +++ + S+E Sbjct: 455 KQLIAKD----LVHNVADLYHLTADDL------AQLDHFKEKSINNLLTALDNSKQNSVE 504 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 I LGI HVGA+ AR +A+ + + D + + +G IA++ Sbjct: 505 LLITGLGIDHVGAKAARLIAQKFKNLAKIMSL----------DVQEIASIDTIGMTIAES 554 Query: 612 IVEFYQNPRNICAVEALLKEVSPSI----GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + ++ P ++ L + + + ++K +V TG L+ R + Sbjct: 555 MTTYFAQPEAQKVIDELRESGLNMDYLGADEPAEIEDNPFKDKTVVLTGKLEHYTRSEFT 614 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + LGA V+ +S KTD +I G + GSK KAQ LGV ++ EE+ + ++ Sbjct: 615 KKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTEEEAIAQIE 666 >gi|291530728|emb|CBK96313.1| DNA ligase, NAD-dependent [Eubacterium siraeum 70/3] Length = 660 Score = 517 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 230/710 (32%), Positives = 367/710 (51%), Gaps = 51/710 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + EQ + E L ++ H+ YY P I D EYD L RR I P++ Sbjct: 1 MDKEQIKSEYEQLCKQAEQHNFNYYVLDDPTIEDDEYDRLMRRIKEIEAENPEIV---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +GG + KVTH + SL+ +++ +L +F R+ + K + +E Sbjct: 58 SSPTQHVGGYAINTFEKVTHEVQMGSLQDVFSKGELYEFDERVKKAVGKAV-----YCVE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG +++ Y+ G F + RGDG GED++ ++ I +IP VL IP IEVRGEV Sbjct: 113 PKIDGLSVSLEYKDGIFTRGSTRGDGFVGEDITKNLKTIKSIPMVLREKIP-FIEVRGEV 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+ K DF L + + +P NPRNAA+G LR+ + +R L+ FV L + Sbjct: 172 YMPKADFEKLVRKQLENDEQPAKNPRNAAAGSLRQKDSRVTASRGLDIFVFNLQRIEGRE 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L M+ LGF V +G + + VS E+ R + YDIDG V KVD+F Sbjct: 232 LTCHSESLDYMKSLGFNVIDGYKTFDNIEDAVSRIMEIGENRQSYSYDIDGAVIKVDDFE 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 L+ +LG A+ P+W ++ K+ ++ T+LLDI+I +GRTG LTPVA EPV + G ++ Sbjct: 292 LRNELGSTAKVPKWAVAFKYPPEEKETKLLDIEINVGRTGALTPVAVFEPVWLAGTTVSR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A LHN+DYI +DIR+GD + V++AG++IP+VV + + +++PF Sbjct: 352 AVLHNQDYIDS-----------KDIRIGDIIAVRKAGDIIPEVVRSVSHA--ENSEPFVI 398 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C + R + A RC + C AQ L+ ++HF SR A NI+GLG+ Sbjct: 399 PHICPVCHGKAERAEDE------AVIRCVN-IDCPAQLLKNIEHFASRPAMNIDGLGEAV 451 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + ++ I AD+++LQ++ E + GF VS + L +I + S Sbjct: 452 VKQLVENR----LISTVADLYSLQQQDL------EMLPGFAKVSASKLIANIENSKTNSP 501 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +R +F+LGI+ +G + A+ L K + S + ++ + + V GDI+A Sbjct: 502 DRLLFALGIKGIGQKNAQLLMKNFGSIEKLSETSS----------EEISAVENFGDILAN 551 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I P +E L ++ + + ++ V TGTL + R +A+ + Sbjct: 552 NIFTALHEPHMTELIERLKSYGVNTVYQSDVKSD-KLAGLTFVITGTLPDMTRDEAKTLI 610 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 Q G S +S+KT ++ G+ GSKL KAQQLGV +++++Q + ++ + Sbjct: 611 EQNGGKCSGSVSKKTSYVLAGEEAGSKLTKAQQLGVTVISQQQLIEMIGE 660 >gi|325681379|ref|ZP_08160905.1| DNA ligase (NAD+) [Ruminococcus albus 8] gi|324106869|gb|EGC01159.1| DNA ligase (NAD+) [Ruminococcus albus 8] Length = 665 Score = 517 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 215/712 (30%), Positives = 365/712 (51%), Gaps = 52/712 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 IE + A+K + L ++YH YY + I D +YD ++ + +P+ R Sbjct: 5 IEMADKDNAKKRIDELVATLNYHAHLYYVEDRNEISDYDYDMMQNELKKLEAQYPEFIR- 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ P ++GG+ KV H + SL+ +++ E +R+F+ R+ + F Sbjct: 64 --PDSPTQRVGGKAVSRFEKVQHKVQMGSLQDVFSFEGVREFVDRVRETV-----DDPKF 116 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +EPKIDG +++ Y G+ + RGDG GE+V+ +R + +IP + ++EVR Sbjct: 117 VVEPKIDGLSVSLEYHDGQLTVGSTRGDGFVGENVTENLRTVRSIPV-SIDSTLPMLEVR 175 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS 247 GEVY+ ++ FL L E +P+ NPRNAA+G LR+ NP R L+ FV + + Sbjct: 176 GEVYMPRSVFLKLVKEQEDNDEQPFKNPRNAAAGSLRQKNPKIAAKRKLDIFVFNVQQVE 235 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + L ++ LGF R +T I++ E+ R LPYDIDG+V KVD Sbjct: 236 GKELTAHKQSLDYLKELGFKTVPDYRLVSTADEIIARIGEIGESRFELPYDIDGVVIKVD 295 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +FS ++++G A+ P+W +++KF ++ +T+LLDI++ +GRTG +TPVA EPV + G Sbjct: 296 DFSQRERIGSTAKDPKWAVAYKFPPEEKNTKLLDIELNVGRTGAVTPVAIFEPVFLAGTQ 355 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN+D + ++I +GD + V++AG++IP+V+ ++ Sbjct: 356 VSRATLHNQD-----------LINEKNINIGDIIKVRKAGDIIPEVLGVVEKNSDG---A 401 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F+ P CP+C+++++R AA RC C AQ + HF S+ A NI+GLG Sbjct: 402 FTLPDECPVCKTKLIRSEEE------AAVRCPNV-ECPAQIFRSIVHFASKGAMNIDGLG 454 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 Q + I AD++ + K+ + F + S NL +I K ++ Sbjct: 455 PQIVRVLLDK----GLITSVADLYHITEE------KLLELDNFKEKSAHNLVTAIEKSKS 504 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SL+R IF LGIR +G A+ L + + + + + GDI Sbjct: 505 NSLDRLIFGLGIRGIGQASAKLLCAKFGGIDSIMRATAA----------EIAEIEGFGDI 554 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +A ++ + + ++ L + + E K V TGTL ++R++A+ Sbjct: 555 MADSVYSAFHEEHMLSLIQRLKDCGVNTDYEKVQ-QDDRFEGKTFVLTGTLPTLKRNEAK 613 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 E + + G S +S+KTD ++ G+ GSKL KA+QLG+KI+ EE+F+ +++ Sbjct: 614 ELIEKFGGKASGSVSKKTDYVLAGEEAGSKLTKAEQLGIKIITEEEFMEMIK 665 >gi|199597353|ref|ZP_03210784.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus HN001] gi|199591869|gb|EDY99944.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus HN001] Length = 674 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 244/716 (34%), Positives = 372/716 (51%), Gaps = 51/716 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P ++E+A E++ L ++++ YY P + D+ YD R A+ AFP L Sbjct: 5 PAAQFTLEEAEAEVAKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAFPKLV- 63 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++G +N KV H IP LS+ +++ E+L ++ R+ +++ Sbjct: 64 --TPDSPTQQVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARMQANVG----HAVD 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + +E KIDG +++ YE G+ V + RGDG+ GEDV+ + I ++P +L P +EV Sbjct: 118 YNVELKIDGLALSLIYENGRLVQGSTRGDGNIGEDVTKNVLTIASVP--KTLKRPLSLEV 175 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGE Y+ K F LN A G P+ANPRNAA+G LR+LNP R L+ F++ L Sbjct: 176 RGECYMPKAAFAKLNARKEADGDTPFANPRNAAAGSLRQLNPKITAGRELDTFIYTLIDA 235 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 K Q+E + M+ LGF N A+ I +Y + S R LPY IDG+V KV Sbjct: 236 DRFNVKTQHEAIAFMQDLGFTTNPSSEVASDMQAIDAYITKYTSDRDALPYGIDGIVLKV 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ +LQ QLG + PRW I++KF ++A T + DI +GRTG++TP A ++PV + G Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAKTVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATLHN D I+ +DIR+GD V++ +AG++IP+V ++V ER + Sbjct: 356 TVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVKERPANTP 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P P CP C ++V + A RC + C AQ E+L HF SR+A NI+GL Sbjct: 405 PAPIPEKCPSCGQKLVHLDDE------VALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + + + + AD++ L E + F + S+ NL ++IN R Sbjct: 458 GPKIIAQLQAKK----LVTDVADLYRLTATDL------EKLDKFKEKSINNLLNAINNSR 507 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 S+ER IF LGIRHVG + AR LA+++ S D + +P +G Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGSLDELMAA----------DQDQVAAIPNIGP 557 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 IA+A+V +++ VE L + S + K +V TG + R Sbjct: 558 TIAEAVVTYFKTDTVKKLVEQLRSAGVNLRYTGPTRPAVSDSFVSGKTVVITGKFAEFSR 617 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + + QLGA V+ +S+KTD++I GD GSKL KAQ L V IM+E L L+ Sbjct: 618 PELTKRLEQLGAKVTGSVSKKTDLVIAGDAAGSKLTKAQDLNVPIMDETALLTNLK 673 >gi|55821530|ref|YP_139972.1| NAD-dependent DNA ligase LigA [Streptococcus thermophilus LMG 18311] gi|55823458|ref|YP_141899.1| NAD-dependent DNA ligase LigA [Streptococcus thermophilus CNRZ1066] gi|81559086|sp|Q5LYL9|DNLJ_STRT1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|81560280|sp|Q5M382|DNLJ_STRT2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|55737515|gb|AAV61157.1| DNA ligase [Streptococcus thermophilus LMG 18311] gi|55739443|gb|AAV63084.1| DNA ligase [Streptococcus thermophilus CNRZ1066] Length = 652 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 214/701 (30%), Positives = 355/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 K + L +++ + YY P + D+EYD L R + P+L ++ + P ++ Sbjct: 2 EKRMKELVDKLNQYAKEYYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQA---DSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + + E KIDG Sbjct: 59 VGGLVLDGFEKYQHEYPLYSLQDAFSREELDAFDKRVK-----SEFPNADYMAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y G A RGDG GE+++ ++ I IP L L+ P I VRGE Y+ + + Sbjct: 114 SISLTYVDGILQVGATRGDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAE 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N + G +ANPRNAA+G LR+L+ + + Q ++ Sbjct: 172 FERINTQRQENGEAEFANPRNAAAGTLRQLDTKVVAERRLATFFYQEASPTERLT-QNDV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ LGF VN ++ I + + R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LNEVAELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDHLAYDIDGVVIKVNSLAIQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +LL +D Q+GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAKLLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+ ++ ++R PS CP C Sbjct: 351 YI-----------TEKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQE-AMPVPSQCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S ++ + A RC +C AQ E L HF SRDA NI G+G ++ FK+ Sbjct: 399 GSGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNISGMGPSVVEKLFKA 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 E ++ ADI+ L + + GF + S LY +I + S E+ ++ L Sbjct: 452 E----LVKEVADIYGLNSQDF------LQLEGFKEKSAEKLYAAIQASKENSAEKLLYGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVGA++++ L + + + + A D ++ V +G++IA++I ++ Sbjct: 502 GIRHVGAKVSKQLLESFGTIKELASA----------DVQAIAAVDGLGEVIAKSIQRYFA 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 ++ L + + + K +V TG L+ ++R +A+ + LGA Sbjct: 552 KEEAQVLLKELESYGVNLSYLGQKVADDAILSGKTVVLTGKLEHLKRSEAKAKLEALGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTD+++ G + GSKLEKAQ LG+++ +E L L Sbjct: 612 VTGSVSKKTDLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL 652 >gi|258648381|ref|ZP_05735850.1| DNA ligase, NAD-dependent [Prevotella tannerae ATCC 51259] gi|260851551|gb|EEX71420.1| DNA ligase, NAD-dependent [Prevotella tannerae ATCC 51259] Length = 677 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 218/711 (30%), Positives = 353/711 (49%), Gaps = 47/711 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L +E+ H+ YY + P ILD+++DAL + + P+ A D N P + Sbjct: 8 KDRIDFLRKELHRHNYNYYVKNNPEILDADFDALMQELADLEQKHPEWA---DNNSPTVR 64 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G +++ +V H P LSL ++ ++++F RI + ++ E K DG Sbjct: 65 VGSDLSNDFVQVRHQYPMLSLGNTYDKAEIKEFYDRITGDLK---GSAFEICCELKFDGL 121 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN--IPEIIEVRGEVYISK 195 I++ YE G+ + A RGDG G+DV+ I+ I +IP L P EVRGEV + Sbjct: 122 SISLLYEDGRLIRAVTRGDGSVGDDVTENIKTIKSIPLQLQEGLGWPRRFEVRGEVLMPW 181 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 F LN E G +ANPRNAASG L+ N + +I K Y Sbjct: 182 ASFEKLNTERETNGEPLFANPRNAASGTLKSKNSAVVASRRLDAYLYYVLGEDIPKKSHY 241 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L ++ GF V+ + + + I +Y + + R LP DG+V KVD + Q+QL Sbjct: 242 ENLLMIKKWGFKVSENIHLSKSLDNIYAYIDHWDTERRYLPVATDGIVLKVDNLNQQQQL 301 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A T LLD+ Q+GRTG +TPVA ++PV + G + A+LHN Sbjct: 302 GSTAKSPRWAIAYKFKAERARTHLLDVIYQVGRTGAVTPVAVMDPVLLAGTTVKRASLHN 361 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFC 434 ED I+ L D+ D V V++AGE+IP++V + + R+ F + C Sbjct: 362 EDIIQQL-----------DLHYNDFVFVEKAGEIIPQIVGVDKDARNESLGDKVHFITQC 410 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + ++R N AA C C Q R++HF+SRDA +I LG + +D + Sbjct: 411 PECGTHLIRFPNE------AATYCPNDATCPPQIKGRIEHFISRDAMDINSLGPETIDNY 464 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 ++ I AD++ L+ + S + + I K ++ +R + Sbjct: 465 YER----GLIHDIADLYKLRIEDLAGS------DATRLKSARKIIEGIEKSKSTPFDRVL 514 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LGIR VG +A++LA Y+ S L++V VG IA+ + + Sbjct: 515 YALGIRFVGKVVAKTLAAYFHSMDALQAAT----------LEELLQVEGVGQTIAENVRQ 564 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 ++ +P N+ ++ L + VS+ + K +V +GT + R + + + + G Sbjct: 565 WFMSPTNLQILDRLTVAGLQMTADVSRQVSNRLAGKSIVISGTFTRHSREEYKAIIEENG 624 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 +S+KTD I+ GDN G SK KA+ LG+ ++ EE FL +L + +TT Sbjct: 625 GKNVGSISKKTDFILAGDNMGPSKRTKAEALGIPLLQEEAFLAMLDEESTT 675 >gi|295692390|ref|YP_003601000.1| DNA ligase [Lactobacillus crispatus ST1] gi|295030496|emb|CBL49975.1| DNA ligase [Lactobacillus crispatus ST1] Length = 668 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 207/715 (28%), Positives = 362/715 (50%), Gaps = 51/715 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + +++++A+KE +SL ++++ + YY P + D+ YD R + FP++ Sbjct: 1 MAEITLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIV-- 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ ++GG+++ KV H IP LS+ +++ +L+ F R+ + + + + Sbjct: 59 -TPDSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRMQKLVG----HPVEY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ YE GK V A+ RG+G+ GEDV+A + I IP+ L + EVR Sbjct: 114 NVELKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPEPL--TTEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+SK F LN E G +ANPRNAA+G LR+L+P + Sbjct: 172 GECYMSKEAFAKLNAEREEQGLAVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ +QKM LGF N R+ + ++ +E + R++L Y IDG+V K+D+ Sbjct: 232 EEITSQHQAIQKMHDLGFHTNETGRKLKILDEVFAFIDEYTAKRNSLTYGIDGIVLKIDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 ++++LG + PRW I++KF ++ T + DI +GRTG++TP A ++PV + G + Sbjct: 292 LGIEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A+LHN DY+ + IR+GD V + +AG++IP++ ++++ +R D+ + Sbjct: 352 ARASLHNPDYL-----------NEKGIRIGDTVKLHKAGDIIPEISEVVMAKRPADSVAY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C ++V + A RC +C AQ E + HF SR A NI GLG Sbjct: 401 QIPTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + + AD++ L + F + S+ NL +++ + Sbjct: 454 KIVKQLIAKD----LVHNVADLYHLTADDL------AQLDHFKEKSINNLLTALDNSKQN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E I LGI HVGA+ AR +A+ + + D + + +G I Sbjct: 504 SVELLITGLGIDHVGAKAARLIAQKFKNLAKIMSL----------DVQEIASIDTIGMTI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI----GRHEKNVSSEIENKKLVFTGTLQKIQRH 664 A+++ ++ P ++ L + + + ++K +V TG L+ R Sbjct: 554 AESMTTYFAQPEAQKVIDELRESALNMDYLGADEPAEIEDNPFKDKTVVLTGKLEHYTRS 613 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + + LGA V+ +S KTD +I G + GSK KAQ LGV ++ EE+ + ++ Sbjct: 614 EFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTEEEAIAQIE 668 >gi|227542668|ref|ZP_03972717.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum ATCC 51866] gi|227181551|gb|EEI62523.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum ATCC 51866] Length = 679 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 208/708 (29%), Positives = 343/708 (48%), Gaps = 50/708 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 L ++ YH D YY P I D+E+D L + + P L P+ P ++ Sbjct: 7 ARWEELAAQVRYHRDKYYN-GTPEITDAEFDVLFSQLQQLEAEHPGL---RAPDSPTLEV 62 Query: 79 GGEMNLS--LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 G + H SL+ +++ ++L +++ R S +++E KIDG Sbjct: 63 GAPSPEGSSFENIAHLERMYSLDNVFSKDELEQWLIRT---------PSDTYSVELKIDG 113 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGEVY 192 I + Y G+ AA RGDG GE+++A R I IP L IP ++EVRGEVY Sbjct: 114 VSIDLVYRDGELATAATRGDGTVGEEITANARMITGIPDHLQENDAFPIPSVLEVRGEVY 173 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFA 251 I+ +DF +N++ +KP+ANPRNAA+G +R+ + R L HG+G I Sbjct: 174 IAIDDFPLVNEQRQLENKKPFANPRNAAAGSMRQKDPQAVKKRKLTLVCHGIGAAEGISF 233 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + Q E + + G PV+ ++ + + R +++DG+V KVD Sbjct: 234 ESQTEAYKALAAFGLPVSEYTTVVHSHEEVHEMVEKWADHRHDAVFEMDGMVVKVDNREQ 293 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+ LG +R+PRW I++K+ ++A T+L+D+ + +GRTG +TP A +EPV + G+ + A Sbjct: 294 QRALGATSRAPRWAIAYKYPPEEAVTKLIDVRVGVGRTGRVTPFAIMEPVEVAGSTVEMA 353 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+ + + + +GD+V++++AGEVIP+V+ + + R +PF FP Sbjct: 354 TLHNQSEVNR-----------KGVLIGDQVVIRKAGEVIPEVLGPVADLRDGTERPFVFP 402 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C +++ + A RC +C Q RL++ R F+IE LG++ Sbjct: 403 TLCPQCGTKLA-----PAKEEDADWRCPNTRSCPGQLAGRLEYIAGRGVFDIEALGEKAA 457 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 ++ + AD+FTL + N G + + L + ++ L Sbjct: 458 ADLVRT----GILTDEADLFTLTEDDLLDSRVYTNSKGAVNAAGKKLIAGLKTQKETDLW 513 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R I L IRHVG AR+LA+ + S + L VG +IA + Sbjct: 514 RVITGLSIRHVGPTAARALAREFGSMDAIRKATE----------EELAATEGVGGVIAAS 563 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 IV+++ + V+A + + +E +V TG+L+ R +E + Sbjct: 564 IVDWFSVDWHRAIVDAWAEAGVTMEDERGEAKEQTLEGLTIVVTGSLENYTRDGVKEAII 623 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + G S +S+KTD ++VG N GSK KA++LG I+NE+QF LL Sbjct: 624 ERGGKASGSVSKKTDYVVVGANAGSKAAKAEELGRPIINEQQFEELLA 671 >gi|89054995|ref|YP_510446.1| DNA ligase, NAD-dependent [Jannaschia sp. CCS1] gi|123401112|sp|Q28PE1|DNLJ_JANSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|88864544|gb|ABD55421.1| DNA ligase NAD-dependent [Jannaschia sp. CCS1] Length = 752 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 285/750 (38%), Positives = 433/750 (57%), Gaps = 56/750 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S + A+ L+ L + +S + Y+ P + D++YDALKR AI AFPDL R+ + Sbjct: 16 SADAAKTRLAELAKRLSDANTAYHAADAPDLSDADYDALKRENAAIEAAFPDLKRA---D 72 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +++G K+TH+ LSL ++ D+ F+ I R+ + + FT EP Sbjct: 73 SPSDQVGAAPAEGFSKLTHTQRMLSLANAFDAGDVPDFVAGIRRYLNLGAEADLPFTAEP 132 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG +++RYE G+ V AA RGDG GE+V+A R I IP+ L+ P+++EVRGEVY Sbjct: 133 KIDGLSLSLRYEDGQLVSAATRGDGAIGENVTANARTIDDIPQTLTDA-PDVLEVRGEVY 191 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 +S DF ALND G K +ANPRNAA+G LR+L+ + +R L FF + G+ S A Sbjct: 192 MSHADFAALNDRQAEAGAKTFANPRNAAAGSLRQLDASITRSRPLRFFAYAWGEVSAPLA 251 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q L ++ LGF +N+ + ++ ++++Y ++ R+ L YDIDG+VYK+D+ Sbjct: 252 ATQSGALNTLKTLGFQINDRTKTCHSAEDMLAHYASIEQDRADLGYDIDGVVYKIDDLDY 311 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG R+ +PRW I+HKF + A T L IDIQ+GRTG L+PVARL PV +GG +++NA Sbjct: 312 QRRLGMRSTTPRWAIAHKFPAELAWTTLEAIDIQVGRTGALSPVARLTPVTVGGVVVSNA 371 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHNEDYI G DA+G +R G+DIRVGDRV V RAG+VIPKV D+ + +R + ++FP Sbjct: 372 TLHNEDYIAGRDANGGPIRDGKDIRVGDRVQVYRAGDVIPKVADVDLAKRPENTAKYAFP 431 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP CQS +R+ A RCTGGL C AQ +E+LKHFVSR AF+I+GLG +Q+ Sbjct: 432 DHCPQCQSEAIREEG------DAVRRCTGGLICPAQAVEKLKHFVSRAAFDIDGLGAKQV 485 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F+ I PADIF L+ ++ N G+G+ S T+L+++I+ +R+I+L Sbjct: 486 EAFYLD----GWIAEPADIFRLKENYGEGMKQLRNREGWGEKSATSLFNAIDDKRSIALH 541 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN------------------- 592 R IF+LGIRHVG A LA+++ +++ A+ ++ Sbjct: 542 RLIFALGIRHVGEVAASDLARHFTTWKALAEIVDQAAPAAEAHRRAEDAVLAERKAAADE 601 Query: 593 ----------------------DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 W L + +G +A ++V +Q R +++ L+ Sbjct: 602 GRRASLQPQRDKAWADTPEPAKAAWDDLTGIDGIGATVAVSLVTTFQQARERASIDRLIT 661 Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690 E++ + S + +VFTG L+++ R +A+ +GA VS +S KTDI++ Sbjct: 662 ELTDIQPPEARATQSAVAGLTVVFTGALERMTRAEAKARAEAMGAKVSGSVSAKTDIVVA 721 Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G GSK +KA+ LG++++ EEQ+L + Sbjct: 722 GPGAGSKEKKAKDLGIELLTEEQWLDRIGD 751 >gi|295394422|ref|ZP_06804646.1| NAD-dependent DNA ligase LigA [Brevibacterium mcbrellneri ATCC 49030] gi|294972774|gb|EFG48625.1| NAD-dependent DNA ligase LigA [Brevibacterium mcbrellneri ATCC 49030] Length = 740 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 224/755 (29%), Positives = 359/755 (47%), Gaps = 76/755 (10%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 L + +K + L +I H + YY + P I D E+D L + + A+P+LAR Sbjct: 13 DPAELEPAERQKLAAELAAQIEEHREAYYVHDAPKISDKEFDELVHALEDLESAYPELAR 72 Query: 68 SEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 + P K+GG + V H SLE ++++E+L ++ R+ + Sbjct: 73 D---DSPTQKVGGYADTEAFAPVQHVARMYSLEDVFSVEELDQWFERVAKSVP----AGT 125 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEII 185 F E KIDG + YE G+ V AA RGDG++GED++A +R I IP L+ N P + Sbjct: 126 PFLSEVKIDGLACNLLYENGQLVRAATRGDGYTGEDITANVRTIDDIPTTLNATNPPARV 185 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL- 243 E+RGEV+ + F LN ++ G+ P+ANPRNAA+G LR+ +P+ R L+ VHG+ Sbjct: 186 EIRGEVFFPSDKFADLNASLVEQGKPPFANPRNAAAGSLRQKDPSITAQRPLHMLVHGIA 245 Query: 244 ----GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 G Q ++ +R G P++ R T + +Y E R L ++I Sbjct: 246 AWQSGDAGAQEPTQQSQVYDLLRDWGMPISPYYRVCTTQDDVHAYITEFGERRHELLHEI 305 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KVD +LQ++LG +R+PRW ++K+ ++ +T+LLDI +Q+GRTG +TP A +E Sbjct: 306 DGIVVKVDNIALQEELGYTSRAPRWACAYKYPPEEVTTKLLDIRVQVGRTGRVTPFAVME 365 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G+ ++ ATLHN +K + + +GD V++++AG+VIP+V+ + Sbjct: 366 PVLVAGSTVSRATLHNAHEVKR-----------KGVLIGDDVVIRKAGDVIPEVLGPVTA 414 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R + F P+ CP C + + + + RC C AQ RL + SR Sbjct: 415 NRDGSERAFVMPTHCPDCGAELY-----EQKEGDKDLRCPNSETCPAQVANRLAYLASRA 469 Query: 480 AFNIEGLGKQQLDFFFKS------EDPAFSIRIPAD------------------------ 509 A +IE LG++ + + A + D Sbjct: 470 ALDIELLGEEASLALTQPLGEPPLKSEAGLFDLTVDDLGEVEIEREVKKNGVPTGEIERV 529 Query: 510 -IFTLQRRQQTSTTKIENI--LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 F + S K + + + D I K + L R + +L IRHVG Sbjct: 530 KYFFTKEELYASGEKKGQVKKPSQPRANTLAMLDEIEKAKGQPLWRVLVALSIRHVGPTA 589 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 AR +A ++ S L+ V VG+ IAQ++V+++ + V+ Sbjct: 590 ARDIAAHFRSMDAVRNAT----------VEDLLEVEGVGETIAQSVVDWFAEEWHAHIVD 639 Query: 627 ALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684 + K + + +E +V TG+L R +E + G S+ +S+K Sbjct: 640 SWAKAGVRMADEPAEESTQPQTLEGLTIVATGSLDNFTRDGIKESIVGAGGKASSSVSKK 699 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 TD ++ G+N GSKL KAQ LGV ++NEEQF LL Sbjct: 700 TDYVVAGENAGSKLTKAQDLGVPVLNEEQFQQLLA 734 >gi|255324552|ref|ZP_05365669.1| DNA ligase, NAD-dependent [Corynebacterium tuberculostearicum SK141] gi|255298458|gb|EET77758.1| DNA ligase, NAD-dependent [Corynebacterium tuberculostearicum SK141] Length = 689 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 203/717 (28%), Positives = 349/717 (48%), Gaps = 53/717 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +E + L QE+ H + YY +P I D+++DAL +R A+ P+LA P+ P Sbjct: 9 DLHREWNDLAQEVRRHRNLYYN-GEPAIPDADFDALFQRLLALEEEHPELAV---PDSPT 64 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G ++ + H +SL+ +++ +++ ++ R + + E KID Sbjct: 65 QQVGAAPSVG-EDIEHLERMMSLDNVFSAGEMQDWLDRT---------PAKTYLTELKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGEV 191 G I + Y G+ AA RGDG GE+++A R I IP L+ +PE+IE+RGEV Sbjct: 115 GLSIDLVYRNGRLTTAATRGDGTVGEEITANARVIEDIPHELTGTAEYPVPELIEIRGEV 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 Y+ DF +N+E A G+ +ANPRNAA+G LR + + R L HGLG Sbjct: 175 YMRPEDFEEINEERAADGKDKFANPRNAAAGGLRMKDSAEVKKRRLKMVCHGLGAREGFS 234 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q++ + + G PV+ +Q ++ + R +++DGLV KVD+ + Sbjct: 235 PTSQHDAYKAIAAWGLPVSPYTKQVHSAKEVQDEVAHWAEHRHDAIFEMDGLVVKVDDLA 294 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+ LG +R+PRW I++K+ ++ +T+L +I++ +GRTG +TP A +EPV + G+ + Sbjct: 295 SQRALGATSRAPRWAIAYKYPPEEVTTKLKNIEVGVGRTGRVTPYAVMEPVFVSGSTVEM 354 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN+ +K + + +GD V++++AGE+IP+V+ + +R ++F Sbjct: 355 ATLHNQSEVKR-----------KGVLIGDTVIIRKAGEIIPEVLGPVREQRDGSEHEWTF 403 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C +++ A RC +C AQ RL++ SR A +IE LG++ Sbjct: 404 PENCPACGTKLA-----PQKDGDADWRCPNTQSCPAQLSARLEYLASRKALDIEALGEKG 458 Query: 491 LDFFFKSE--------DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 + + ++ A ++ + + + NL +++ Sbjct: 459 AMDLIDNGILVDESELFELTAKKLLASDVYTAKKDTKDKRSKKEGNVKVNTAGQNLLNNL 518 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + + R + SL IRHVG AR+LA Y S L V Sbjct: 519 EEVKGRDFWRVLVSLSIRHVGPIAARALASRYGSMDKLRAA----------KTEELAEVD 568 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 VG IAQ+ ++++ + V+ E++ +E +V TG+L+ Sbjct: 569 GVGMTIAQSFHDWFEVDWHRTIVDKWAAAGVAMEVAAEEHKEQTLEGLTIVVTGSLENFT 628 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R A+E + G + +S+KT ++ G N GSK +KA++L + I+NE QF LL+ Sbjct: 629 RDSAKEAIVSRGGKATGSVSKKTSYLVAGANAGSKEDKARELDIPILNESQFQQLLE 685 >gi|313207091|ref|YP_004046268.1| DNA ligase, naD-dependent [Riemerella anatipestifer DSM 15868] gi|312446407|gb|ADQ82762.1| DNA ligase, NAD-dependent [Riemerella anatipestifer DSM 15868] gi|315022511|gb|EFT35538.1| DNA ligase [Riemerella anatipestifer RA-YM] Length = 669 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 217/711 (30%), Positives = 353/711 (49%), Gaps = 46/711 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S++ + ++ L +E+ H+ YY P I D E+D + + A+P+ A D Sbjct: 1 MSLDDIKHKIEELREELHQHNYNYYVLDTPSISDYEFDMMLEELKELELAYPEFA---DN 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++GG + + V H SL+ +N EDL + R+ + D I + E Sbjct: 58 NSPTQRVGGNITKNFPTVEHRHRMYSLDNSYNFEDLSDWQNRLIKSL---DTTDIEYVAE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG I+I YE G F A RGDG G++++A ++ I IP + P +RGE+ Sbjct: 115 LKYDGASISILYENGAFKQAITRGDGFQGDEITANVKTISDIPLKIKGEYPNTFYIRGEI 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 Y++K F +N G + NPRN ASG L+ + T++ + V + Sbjct: 175 YLTKKHFNLINKAREKEGLDLFMNPRNTASGSLKMQDSTEVRKRKLSAVLYQVVAEDTPV 234 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 K +E+L++ + GF + + + + + R L ++IDG+V KV+ + Sbjct: 235 KTHWELLEQTKDWGFKTSQQAKLCKNLDEVKDFIDYWDKERQHLDFEIDGIVIKVNNLNQ 294 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+ LG A+SPRW ++HKF ++ T+L I Q+GRTG +TPVA L+PV + G ++ A Sbjct: 295 QQLLGYTAKSPRWAMAHKFKAEKVETQLESISYQVGRTGTITPVANLKPVLLAGTIVKRA 354 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHNED I+ L ++ D V V++ GE+IPK+V + +R P+A ++ Sbjct: 355 SLHNEDIIRKL-----------NLHTQDFVYVEKGGEIIPKIVGVNKEKRLPNATLVAYI 403 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 S CP C +VR+ AAH C C Q + ++ H+VSR A NIE LG + + Sbjct: 404 SHCPECHMPLVRNEGE------AAHFCPNETHCPPQVIGKMIHYVSRKALNIENLGSETI 457 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F+ I AD +TL + Q + + + S N+ D I K + I E Sbjct: 458 EQLFRE----GLISNIADFYTLTKEQ------LLPLDRMAEKSAQNILDGIEKSKQIPFE 507 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + +F LGI+HVG +A+ L K + + + L V VG IA++ Sbjct: 508 KVLFGLGIKHVGETVAKKLVKNFHTIDGLKKAT----------LEELTEVEDVGIKIAES 557 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +V ++QN NI ++ L VS+ +E K +FTG L R +A+E Sbjct: 558 LVNYFQNEENIEILDRLKSYGIQLEQEENTSAKVSNALEGKTFLFTGKLSLFTREQAEEM 617 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQ 719 V + G + +S+ + ++VG+ GSKL+KAQ L V I++E++FL L+ Sbjct: 618 VEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQTLSTVTILDEQEFLDLIN 668 >gi|11095423|gb|AAG29863.1|AF313764_6 DNA ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|49284|emb|CAA77966.1| DNA ligase [Zymomonas mobilis subsp. mobilis CP4] gi|382210|prf||1819268B DNA ligase Length = 731 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 294/733 (40%), Positives = 440/733 (60%), Gaps = 51/733 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + + LS EQA EL L + IS++D Y+ P + DSEYDAL R I FPDL Sbjct: 21 LAPKNLSREQAVIELERLAKLISHYDHLYHDKDNPAVPDSEYDALVLRNRRIEQFFPDLI 80 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R P+ P K+G N L K+ H LSL+ + +D+ F+ R+ RF+ K++ ++ Sbjct: 81 R---PDSPSKKVGSRPNSRLPKIAHRAAMLSLDNGFLDQDVEDFLGRVRRFFNLKENQAV 137 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEII 185 T+EPKIDG ++RYEKG A RGDG GEDV+ +R I IP+ L N PEII Sbjct: 138 ICTVEPKIDGLSCSLRYEKGILTQAVTRGDGVIGEDVTPNVRVIDDIPKTLKGDNWPEII 197 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 E+RGEVY++K+DF ALN +K +ANPRNAA+G LR+L+P R L F HG G Sbjct: 198 EIRGEVYMAKSDFTALNARQTEENKKLFANPRNAAAGSLRQLDPNITARRSLRFLAHGWG 257 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + + + A QY M++ + G V+N + +A+ ++ +Y ++++ R+ L +DIDG+VY Sbjct: 258 EATSLPADTQYGMMKMIESYGLSVSNLLARADDIGQMLDFYQKIEAERADLDFDIDGVVY 317 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 K+D+ Q++ G AR+PR+ ++HKF ++A T LLDI+IQ+GRTG+LTPVA+LEPV +G Sbjct: 318 KLDQLDWQQRFGFSARAPRFALAHKFPAEKAQTTLLDIEIQVGRTGVLTPVAKLEPVTVG 377 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++++ATLHN D I+ L +R GDRVLV+RAG+VIP++V+ + + D Sbjct: 378 GVVVSSATLHNSDEIERL-----------GVRPGDRVLVQRAGDVIPQIVENLTPDV--D 424 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + FP CP+C S R+ A RCTGGL C AQ++E L HFVSR AF I+ Sbjct: 425 RPIWHFPHRCPVCDSVARREEGE------VAWRCTGGLICPAQRVEALCHFVSRTAFEID 478 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLGK ++ FF + I PADIF L +++Q + G+G++SV NL +I+K Sbjct: 479 GLGKSHIESFFADK----LIETPADIFRLFQKRQLLIER----EGWGELSVDNLISAIDK 530 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN-------IIAHNNDDWL- 596 RR + +RF+F+LGIRHVGA AR LAK Y ++ NF I+ + + + Sbjct: 531 RRKVPFDRFLFALGIRHVGAVTARDLAKSYQTWDNFKAAIDEAAHLRTILQPSSEESEEK 590 Query: 597 -------SLIR---VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 LI +P +G I +++++F+ N V LL+EV E SS Sbjct: 591 YQKRVDKELISFFHIPNMGGKIIRSLLDFFAETHNSDVVSDLLQEVQIEPLYFE-LASSP 649 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + K +VFTG+LQKI R +A+ LGA V++ +S+KT++++ G+ GSKL KA++L + Sbjct: 650 LSGKIIVFTGSLQKITRDEAKRQAENLGAKVASSVSKKTNLVVAGEAAGSKLSKAKELDI 709 Query: 707 KIMNEEQFLFLLQ 719 I++E+++ +++ Sbjct: 710 SIIDEDRWHRIVE 722 >gi|148240764|ref|YP_001226151.1| NAD-dependent DNA ligase LigA [Synechococcus sp. WH 7803] gi|166216252|sp|A5GPI9|DNLJ_SYNPW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|147849303|emb|CAK24854.1| NAD-dependent DNA ligase [Synechococcus sp. WH 7803] Length = 698 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 223/735 (30%), Positives = 358/735 (48%), Gaps = 57/735 (7%) Query: 12 LSIEQ-ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 +SI Q ++ + L Q ++ YY P + DS YD L R + A P+L + Sbjct: 1 MSIPQGLQERAAELRQLLNRAAHAYYVLDAPDLEDSVYDRLYRELLDLEAAHPELVEA-- 58 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----NS 125 + P ++GG VTH IP SL+ ++ E+LR + TR+ + ++ + Sbjct: 59 -DSPTQRVGGSPAEGFRSVTHRIPLFSLDNAFSAEELRGWYTRLLKVLDREPPSGSPLPA 117 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEI 184 + E KIDG + + Y+ G V AA RGDG GED++A +R I +IP L P Sbjct: 118 LAMVGELKIDGNALALSYDNGVLVRAATRGDGDQGEDITANVRTIASIPLRLHLDPPPAW 177 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL 243 +EVRGE I N F A+N E A +ANPRNA +G LR+L+P R L+FF + L Sbjct: 178 VEVRGEALIPDNTFAAINSERAARDEPLFANPRNACAGTLRQLDPKVVAARRLDFFAYTL 237 Query: 244 GKTSEI---FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 + Q+E L+ + GF VN + ++ + S R L Y D Sbjct: 238 HLPEDWSGERPTSQWESLRWLEDAGFRVNPNAALLPDVDSVEQFFGDWDSRRHDLNYATD 297 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V K+++ LQ G ++PRW I+ K+ ++A +RLL + Q+GRTG++TPVA EP Sbjct: 298 GVVVKLNDLRLQDAAGFTQKAPRWAIALKYPAEEAPSRLLKLTCQVGRTGVVTPVAEFEP 357 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V++ G ++ ATLHN D ++ L D+ GD ++V++AGE+IP+V+ ++ Sbjct: 358 VSLAGTSVSRATLHNADRLQEL-----------DLHSGDTIIVRKAGEIIPEVLRVLPEL 406 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R A P P CP C S +VR+ AA RC +C A L+H+VS+ A Sbjct: 407 RPEGALPLELPQQCPSCGSDLVRESGE------AATRCVNS-SCPAILSGALRHWVSKGA 459 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +++GLG + ++ + +R AD++ L TS + G+ S NL Sbjct: 460 LDVDGLGSKLIEQLVER----GLVRSIADLYRLDTALLTS------LERMGEKSAGNLVA 509 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 ++ + R R ++ LGI HVG A++LA + + A ++ Sbjct: 510 ALAQSRTQPWSRQLYGLGIHHVGEVNAKALASAFADAHSLADAAVQRP-------EAITD 562 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--------NVSSEIENKKL 652 + +G IAQ++ +++ N ++ L ++ N + + Sbjct: 563 LHGIGPEIAQSLQQWFNTSANQDLLQQLRAVGLTLAASDQERQALADRNNGKGHLNGQTF 622 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TGTL + R +AQ + G VS +S+KT ++ GD GSKL+KA LGV +++E Sbjct: 623 VLTGTLPSLSRSQAQALIEGAGGKVSGSVSKKTSFVVAGDEAGSKLDKANTLGVSVLDEA 682 Query: 713 QFLFLLQQYNTTLRI 727 + L+Q T+ + Sbjct: 683 ALMLLIQNSADTIHL 697 >gi|56551260|ref|YP_162099.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ZM4] gi|59802648|sp|P28719|DNLJ_ZYMMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56542834|gb|AAV88988.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ZM4] Length = 731 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 296/733 (40%), Positives = 441/733 (60%), Gaps = 51/733 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + + LS EQA EL L + IS++D Y+ P + DSEYDAL R I FPDL Sbjct: 21 LAPKDLSREQAVIELERLAKLISHYDHLYHDKDNPAVPDSEYDALVLRNRRIEQFFPDLI 80 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R P+ P K+G N L K+ H LSL+ + +D+ F+ R+ RF+ K++ ++ Sbjct: 81 R---PDSPSKKVGSRPNSRLPKIAHRAAMLSLDNGFLDQDVEDFLGRVRRFFNLKENQAV 137 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEII 185 T+EPKIDG ++RYEKG A RGDG GEDV+ +R I IP+ L N PEII Sbjct: 138 ICTVEPKIDGLSCSLRYEKGILTQAVTRGDGVIGEDVTPNVRVIDDIPKTLKGDNWPEII 197 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 E+RGEVY++K+DF ALN +K +ANPRNAA+G LR+L+P R L F HG G Sbjct: 198 EIRGEVYMAKSDFAALNARQTEENKKLFANPRNAAAGSLRQLDPNITARRSLRFLAHGWG 257 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + + + A QY M++ + G V+N + +A+ ++ +Y ++++ R+ L +DIDG+VY Sbjct: 258 EATSLPADTQYGMMKVIESYGLSVSNLLARADDIGQMLDFYQKIEAERADLDFDIDGVVY 317 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 K+D+ Q++ G AR+PR+ ++HKF ++A T LLDI+IQ+GRTG+LTPVA+LEPV +G Sbjct: 318 KLDQLDWQQRFGFSARAPRFALAHKFPAEKAQTTLLDIEIQVGRTGVLTPVAKLEPVTVG 377 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++++ATLHN D I+ L +R GDRVLV+RAG+VIP++V+ + + D Sbjct: 378 GVVVSSATLHNSDEIERL-----------GVRPGDRVLVQRAGDVIPQIVENLTPDV--D 424 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + FP CP+C S R+ A RCTGGL C AQ++ERL HFVSR AF IE Sbjct: 425 RPIWRFPHRCPVCDSVARREEGE------VAWRCTGGLICPAQRVERLCHFVSRTAFEIE 478 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLGK ++ FF + I PADIF L +++Q + G+G++SV NL +I+K Sbjct: 479 GLGKSHIESFFADK----LIETPADIFRLFQKRQLLIER----EGWGELSVDNLISAIDK 530 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN-------IIAHNNDDWL- 596 RR + +RF+F+LGIRHVGA AR LAK Y ++ NF I+ + + + Sbjct: 531 RRKVPFDRFLFALGIRHVGAVTARDLAKSYQTWDNFKAAIDEAAHLRTILQPSSEESEEK 590 Query: 597 -------SLIR---VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 LI +P +G I +++++F+ N V LL+EV E SS Sbjct: 591 YQKRVDKELISFFHIPNMGGKIIRSLLDFFAETHNSDVVSDLLQEVQIEPLYFE-LASSP 649 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + K +VFTG+LQKI R +A+ LGA V++ +S+KT++++ G+ GSKL KA++L + Sbjct: 650 LSGKIIVFTGSLQKITRDEAKRQAENLGAKVASSVSKKTNLVVAGEAAGSKLSKAKELDI 709 Query: 707 KIMNEEQFLFLLQ 719 I++E+++ +++ Sbjct: 710 SIIDEDRWHRIVE 722 >gi|227892258|ref|ZP_04010063.1| NAD-dependent DNA ligase [Lactobacillus salivarius ATCC 11741] gi|227865899|gb|EEJ73320.1| NAD-dependent DNA ligase [Lactobacillus salivarius ATCC 11741] Length = 672 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 241/719 (33%), Positives = 394/719 (54%), Gaps = 55/719 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + EL L +++ + YY P + DS YD +R + A PDL + Sbjct: 1 MSQKDIEMELKELRDKLNRWSNEYYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ KV H IP LSL +++ E+L +F+ R+ ++K + ++ E Sbjct: 58 DSPSQRVGGKVLSGFTKVNHDIPMLSLGDVFSKEELIEFLERLENSVEQK----LDYSCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++ YE GKF+ + RG+G GED++ ++ I IP L+ + IEVRGE Sbjct: 114 LKIDGLAISLTYENGKFIKGSTRGNGVIGEDITENLKTIKAIPMELNEPVS--IEVRGEC 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN + A G+ +ANPRNAA+G LR+L+ +R L+ F++ L + ++ Sbjct: 172 YMPKKSFVELNTKREAEGQAVFANPRNAAAGSLRQLDTKITASRNLSTFIYYLMEPEKLG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K Q E L K+ GF VNN +Q T I +Y +E R+ LPYDIDG+V KV+ F+ Sbjct: 232 IKTQTEALNKLESWGFKVNNESKQVKTKEEIFAYIDEATDQRANLPYDIDGIVLKVESFA 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q Q+G + PRW I++KF + T++LDI+ +GRTG++TP A +EPV + G + Sbjct: 292 VQSQVGNTVKVPRWAIAYKFPPDEQETKVLDIEWTVGRTGVVTPTAVMEPVTLAGTTVAR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN DY++ +DIR+GD V + +AG++IP++ ++++ +R D+ + Sbjct: 352 ASLHNPDYLR-----------EKDIRIGDTVKLHKAGDIIPEISEVVLAKRTEDSVEYQI 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C + +V + A RC C A E L HF SR+A +I GLG + Sbjct: 401 PTECPECGANLVHLDDE------VALRCINPQ-CPALVKESLTHFASRNAMDIRGLGPRI 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + E I+ A I++L Q + + F + S NL +IN RN S+ Sbjct: 454 IEQLYNRE----MIKDVAGIYSLTFEQLIT------LDKFKEKSANNLLTAINNSRNNSI 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER IF LGIRHVGA++AR LA+ Y S N A+ + + +G II Sbjct: 504 ERLIFGLGIRHVGAKVARILAENYKSMDNLAKA----------KSDEISTIDSLGKIIGD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSI-------GRHEKNVSSEIENKKLVFTGTLQKIQR 663 ++ ++ + + ++ L + + E + S ++V TGTL ++R Sbjct: 554 SVEMYFADEHVMELLDELRQAGVNLEFLGKTREEQLESSTDSSFNGLRVVLTGTLDTLKR 613 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 +A+ ++ GA V+ +S+KTD++I G + GSKL KAQ+L V++MNE +F+ +++ + Sbjct: 614 SEAKSWLEAHGAKVTGSVSKKTDLLIAGHDAGSKLTKAQELNVRVMNEAEFIQQMEEES 672 >gi|33866919|ref|NP_898478.1| NAD-dependent DNA ligase LigA [Synechococcus sp. WH 8102] gi|81573701|sp|Q7U3P1|DNLJ_SYNPX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|33639520|emb|CAE08904.1| Putative DNA ligase [Synechococcus sp. WH 8102] Length = 679 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 220/718 (30%), Positives = 356/718 (49%), Gaps = 54/718 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + ++ + L ++ YY P++ D+ YD L R + A P L + Sbjct: 1 MAEQQQRAAELRSLLNRAAHAYYVLDAPVMEDTLYDRLYRELQQLEQADPSLL---SADS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G V H IP SL+ ++ +L+ + R+ + + DD+ + E K Sbjct: 58 PTQRVGKAPATGFHSVEHRIPLQSLDNAFDHGELKAWHERLLKVLDRADDSPLPLVGELK 117 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVY 192 IDG + + Y G AA RGDG SGE+++A +R I +IP + PE +EVRGE + Sbjct: 118 IDGNALALSYRHGVLERAATRGDGSSGEEITANVRTISSIPLRLQIDDPPEWVEVRGEAF 177 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT--SEI 249 I + F A+N+E A G +ANPRNA +G LR+L+P R L+FF + L Sbjct: 178 IPDDTFAAINNERAAHGDALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPSDHSN 237 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + Q+++L + GF VN + +GI + + + R L Y DG+V K+++ Sbjct: 238 SPECQWDVLAWLEQAGFRVNPNRELCDGLNGIERFCDRWEQQRHQLTYATDGVVVKLNDL 297 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ + G ++PRW I+ K+ ++A ++LL + +Q+GRTG +TPVA EPV + G ++ Sbjct: 298 RLQDEAGTTQKAPRWAIALKYPAEEAPSKLLKLAVQVGRTGAVTPVAEFEPVALAGTSVS 357 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN D I L D+ +GD V+V++AGE+IP+VV ++ R A P Sbjct: 358 RATLHNADRIAEL-----------DLHLGDTVVVRKAGEIIPEVVRVLPELRPTGAVPLE 406 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C S +VRD + AA RC +C A L+H+VS+ A +++GLG + Sbjct: 407 LPDHCPECGSNLVRDDSE------AATRCINS-SCPAILRGGLRHWVSKGALDVDGLGNK 459 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + + +R AD++ L S + G+ S NL ++ + + Sbjct: 460 LIQQLVER----GLVRSIADLYRLDAALLAS------LERVGEKSAANLVAALEQSKQQP 509 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 R ++ LGIRH+G A++LA Y + + A + S+ + +G I+ Sbjct: 510 WHRQLYGLGIRHIGEVNAKALAAAYPNSASLAAA----------EPESIAALHGIGPEIS 559 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEK---------NVSSEIENKKLVFTGTLQK 660 ++ +++ NP N +E L + N S + K LV TGTL Sbjct: 560 SSLQQWHANPPNQRLLEDLRAVGLSLEANTSELNANSTGEGNSSGALLGKTLVLTGTLPN 619 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R A+ + G VS +S+KTD ++ G+ GSKL KA+ LGV+I+ E + LL Sbjct: 620 LSRSDAKTLIEGAGGKVSGSVSKKTDYLVAGEAAGSKLSKAESLGVEILTEAELQKLL 677 >gi|194335632|ref|YP_002017426.1| DNA ligase, NAD-dependent [Pelodictyon phaeoclathratiforme BU-1] gi|254781384|sp|B4SCX5|DNLJ_PELPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|194308109|gb|ACF42809.1| DNA ligase, NAD-dependent [Pelodictyon phaeoclathratiforme BU-1] Length = 674 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 224/710 (31%), Positives = 363/710 (51%), Gaps = 50/710 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + ++ L +EI H YY +KP + D E+D L + + FP L P+ P Sbjct: 7 AAEAIAQLRREIERHTHLYYVEAKPELSDFEFDQLLDQLITLERQFPQLL---TPDSPSQ 63 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + V H P LSL ++I ++ +F R+ + + E K DG Sbjct: 64 RVGGAITREFPAVQHREPMLSLSNSYSITEVEEFYNRVRKLLALEGVVEQEMVAELKFDG 123 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-------IIEVRG 189 I++ Y+ G V A RGDG G+D++A ++ + TIP L + IEVRG Sbjct: 124 VAISLIYQDGILVRGATRGDGRQGDDITANLKTVATIPLRLEETLVAALQGEERAIEVRG 183 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 EV++ K DF LN+ +ANPRNA +G L+ + ++ R FV K + Sbjct: 184 EVFMRKEDFERLNESR--PDEDRFANPRNATAGSLKLQDSGEVARRSMSFVAYYLKGLKD 241 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + L+ + LGF + R NT I +Y E R LPY+ DG+V K+++ Sbjct: 242 ESTPHIHRLELLARLGFFTGDHYRLCNTLEEINTYIAEWAEKRWQLPYETDGVVLKLNDV 301 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +++LG A+SPRW I++K+ +QA + L ++ Q+GR G +TPVA LEPV + G+ ++ Sbjct: 302 PFREKLGATAKSPRWAIAYKYPAQQARSVLQNVLFQVGRLGTITPVAELEPVLLAGSTVS 361 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 +TLHN D I+ L + + DRV+++++GEVIPKVV + ER DA P Sbjct: 362 RSTLHNFDEIERL-----------GLMLRDRVIIEKSGEVIPKVVRTLFEERPADAMPIL 410 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + +VR N ++ C C AQ RL HF SR+A +I+ LG Sbjct: 411 PPTHCPSCGAPLVRPENE------VSYSCPNEEECPAQIKGRLLHFASRNAMDIQTLGDA 464 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ ++ P D++ LQ Q +E + G S N+ ++ K R S Sbjct: 465 LVEQLVAK----GLVKDPGDLYFLQEPQ------LEKLERMGPKSAQNILRALEKSREKS 514 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 ER +++LGIRHVG AR L++ S + L +P +G ++A Sbjct: 515 YERLLYALGIRHVGRATARELSQACPSIDLLREASE----------EQLATIPDIGPVVA 564 Query: 610 QAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++I++++ P +E L + S ++ V+ E ++FTG+L++ R KA E Sbjct: 565 RSIIDYFAKPSWPHLLEKLRTAALQLSASEPKEQVNRNFEGVTVLFTGSLERYDRQKASE 624 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 V + G V +S+KT +++ G +PGSKL+KA +LGV++++E++F +L Sbjct: 625 LVLERGGRVVGSVSKKTGMVVAGQDPGSKLQKANKLGVRVVSEDEFEAML 674 >gi|116494557|ref|YP_806291.1| NAD-dependent DNA ligase [Lactobacillus casei ATCC 334] gi|122264017|sp|Q03AC3|DNLJ_LACC3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116104707|gb|ABJ69849.1| NAD-dependent DNA ligase [Lactobacillus casei ATCC 334] Length = 674 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 235/717 (32%), Positives = 365/717 (50%), Gaps = 51/717 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P ++E+A+ E+ L ++++ YY P + D+ YD R A+ A+P L Sbjct: 5 PAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKLV- 63 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++G +N KV H IP LS+ +++ E+L ++ R+ + + Sbjct: 64 --TPDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARMQSNVG----HPVD 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + +E KIDG +++ YE GK V + RGDG+ GEDV+ + I ++P+ L + +EV Sbjct: 118 YNVELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPKQLKQPLS--LEV 175 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGE Y+ K F LN G P+ANPRNAA+G LR+L+ R L+ F++ L + Sbjct: 176 RGECYMPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEP 235 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + Q+E + M+ LGF N A I +Y + + R LPY IDG+V KV Sbjct: 236 EQFNVTTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKV 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ +LQ QLG + PRW I++KF ++A T + DI +GRTG++TP A ++PV + G Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATLHN D I+ +DIR+GD V++ +AG++IP+V ++V +R D Sbjct: 356 TVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVAKRPADTP 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P P CP C ++V + A RC + C AQ E+L HF SR+A NI+GL Sbjct: 405 PAPIPEVCPSCGQKLVHLDDE------VALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + + ++ AD++ L + F + S+ NL +IN R Sbjct: 458 GPKIVAQLQAK----HLVKDVADLYHLTAADL------AKLDKFKEKSINNLLSAINNSR 507 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 S+ER IF LGIRHVG + AR LA+++ + ++ VP +G Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGDLDHLMTASQ----------EAIADVPNIGP 557 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 I +AIV +++ + L + + S + K +V TG + R Sbjct: 558 TIGEAIVTYFKAATVQKLITQLREADVNLRYTGPTKPVVKDSFVAGKTVVITGKFAEFSR 617 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + LGA V+ +S+KTDI+I GD GSKL KAQ L V IMNE + L L+ Sbjct: 618 PALTKQLEGLGAKVTGSVSKKTDILIAGDAAGSKLAKAQSLNVPIMNETELLANLKD 674 >gi|228476991|ref|ZP_04061629.1| DNA ligase, NAD-dependent [Streptococcus salivarius SK126] gi|228251010|gb|EEK10181.1| DNA ligase, NAD-dependent [Streptococcus salivarius SK126] Length = 652 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 217/701 (30%), Positives = 357/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 K + L +++ + YY P + D+EYD L R A+ +P+ ++ + P ++ Sbjct: 2 EKRMKELVVKLNQYAKEYYTEDNPSVSDAEYDKLYRELVALEAEYPEYVQA---DSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + + E KIDG Sbjct: 59 VGGLVLDGFEKYQHEYPLYSLQDAFSREELDAFDQRVK-----AEFPNADYMAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y G A RGDG GE+++ ++ I IP L L+ P I VRGE Y+ + + Sbjct: 114 SISLTYVDGVLQVGATRGDGSIGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAE 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N + G +ANPRNAA+G LR+L+ + + S Q ++ Sbjct: 172 FERINIQRQENGEAEFANPRNAAAGTLRQLDTKVVAERR-LATFLYQEASPTERLTQNDV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ LGF VN ++ I + + R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LNEVAELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDDLAYDIDGVVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ LL +D Q+GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAELLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+ ++ ++R P P+ CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQE-PMEVPTQCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S ++ + A RC +C AQ E L HF SRDA NI G+G ++ FK+ Sbjct: 399 GSGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNIAGMGPSVVEKLFKA 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 E ++ ADI+ L + + GF + S LY +I + S E+ ++ L Sbjct: 452 E----LVKDVADIYGLNSQDF------LQLEGFKEKSAEKLYAAIQASKENSAEKLLYGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVGA++++ L + + S + A D ++ V +G++IA++I ++ Sbjct: 502 GIRHVGAKVSKQLLEAFGSIKELASA----------DVEAIAAVDGLGEVIAKSIQRYFA 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 ++ L + + + K +V TG L+ ++R +A+ + LGA Sbjct: 552 KEEAQVLLKELETYGVNLAYLGQKVADDAILSGKTVVLTGKLEHLKRSEAKAKLEALGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTD+++ G N GSKLEKAQ LG+++ +E L L Sbjct: 612 VTGSVSKKTDLVVAGSNAGSKLEKAQSLGIEVKDEAWLLDL 652 >gi|7674018|sp|Q9ZFY8|DNLJ_THESK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|4235370|gb|AAD13188.1| NAD-dependent DNA ligase [Thermus sp. AK16D] Length = 674 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 234/712 (32%), Positives = 382/712 (53%), Gaps = 52/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++E+AR+ ++ L I YH+ YY P I D+EYD L R + FP+L P Sbjct: 1 MTLEEARRRVNELRDLIRYHNYLYYVLDAPEISDAEYDRLLRELKELEERFPELK---SP 57 Query: 72 NGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G + V H SL+ ++++++R F RI R +K +T+ Sbjct: 58 DSPTEQVGARPLEATFRPVRHPTRMYSLDNAFSLDEVRAFEERIERALGRK--GPFLYTV 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K+DG + + YE+G V+ A RGDG +GE+V+ + IPTIPR L+ P+ +EVRGE Sbjct: 116 ERKVDGLSVNLYYEEGILVFGATRGDGETGEEVTQNLLTIPTIPRRLTGV-PDRLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VY+ FL LN E+ G + + NPRNAA+G LR+ +P R L + LG E Sbjct: 175 VYMPIEAFLRLNQELEEAGERIFKNPRNAAAGSLRQKDPRVTARRGLRATFYALGLGLEE 234 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K Q+++L +R GFPV +G +A G+ Y R LP++ DG+V K+D+ Sbjct: 235 TGLKSQHDLLLWLRERGFPVEHGFTRALGAEGVEEVYQAWLKERRKLPFEADGVVVKLDD 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +L ++LG AR+PR+ +++KF ++ TRLL + Q+GRTG +TPV LEPV I G+ + Sbjct: 295 LALWRELGYTARTPRFALAYKFPAEEKETRLLSVAFQVGRTGRITPVGVLEPVFIEGSEV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + TLHNE +I+ L D+R+GD VLV +AG VIP+V+ ++ R + +P Sbjct: 355 SRVTLHNESFIEEL-----------DVRIGDWVLVHKAGGVIPEVLRVLKERRTGEEKPI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 +P CP C ++++ HRC L C A++ E ++H+ SR A +I+GLG+ Sbjct: 404 IWPENCPECGHALIKE--------GKVHRCPNPL-CPAKRFEAIRHYASRKAMDIQGLGE 454 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + +R AD++ L++ + + G+ S NL I + + Sbjct: 455 KLIEKLLEK----GLVRDVADLYRLKKEDLVN------LERMGEKSAENLLRQIEESKGR 504 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 LER +++LG+ VG +AR+LA + + L+ V VG++ Sbjct: 505 GLERLLYALGLPGVGEVLARNLALRFGHMDRLLEA----------GLEDLLEVEGVGELT 554 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A+AI+ ++P V L + + + ++ V TG L + R + + Sbjct: 555 ARAILNTLKDPEFRDLVRRLKEAGVEMEAKERE--GEALKGLTFVITGELSR-PREEVKA 611 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + +LGA V+ +SRKT ++VG+NPGSKLEKA+ LGV ++EE+ L+++ Sbjct: 612 LLRRLGAKVTDSVSRKTSFLVVGENPGSKLEKARALGVPTLSEEELYRLIEE 663 >gi|258422981|ref|ZP_05685880.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9635] gi|257846768|gb|EEV70783.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9635] Length = 667 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 244/715 (34%), Positives = 375/715 (52%), Gaps = 53/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++ L ++ + YY P + DSEYD L I P+ + Sbjct: 1 MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N +DLRKF RI ++ + E K Sbjct: 58 PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++Y G FV RGDG +GED++ ++ I IP + + +EVRGE Y+ Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLN--VEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + FL LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L ++ LGF N + N G++ Y + S R +LPYDIDG+V KV++ Q Sbjct: 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++G +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V+VK+AG++IP+VV I R DA + P+ Sbjct: 351 LHNEDLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++SE I+ ADIF L + G V NL +I + ++ SLE Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLEN 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + L+ + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668 V + +N ++ L + I + K E K +V TG L K+ R++A + Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHKMTRNEASK 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 ++T GA V++ +++ TD++I G++ GSKL KAQ LG++I E+QF+ + N+ Sbjct: 613 WLTSQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667 >gi|222151884|ref|YP_002561044.1| DNA ligase [Macrococcus caseolyticus JCSC5402] gi|254781362|sp|B9E830|DNLJ_MACCJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|222121013|dbj|BAH18348.1| DNA ligase [Macrococcus caseolyticus JCSC5402] Length = 663 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 231/701 (32%), Positives = 367/701 (52%), Gaps = 53/701 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 + ++ L Q + ++ Y+ P + DSEYD L I P+L + P Sbjct: 3 IEQRVTELHQLLHQYNYEYHVQDNPSVPDSEYDKLLHELIDIEREHPELKTD---DSPTV 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + KV H P LSL ++ EDL F R+ + + + +E KIDG Sbjct: 60 RVGGTPVSAFEKVDHDTPMLSLGNAFSEEDLLAFDKRVK-----DEVGEVEYMVELKIDG 114 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 ++++Y G FV RGDG +GE+++ ++ I IP L+L++P EVRGE Y+ + Sbjct: 115 LAVSLKYVDGVFVQGLTRGDGTTGENITQNLKTIHAIP--LTLSVPLTFEVRGEAYMPRK 172 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255 FLALN VG ANPRNAA+G LR+L+ R L+ F++ + E+ A+ Q Sbjct: 173 SFLALNAYREKVGEPLAANPRNAAAGSLRQLDSKLTAKRKLDIFLYSVNDLRELNAQSQS 232 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L K+ +GF N+ + + Y R+ L YDIDG+V KV++ S Q +L Sbjct: 233 EALDKLDEIGFKTNHERKLCRNMEEVFEYIKYWTEKRNDLAYDIDGIVIKVNDLSKQDEL 292 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SP+W I++KF ++ T L DI++ IGRTG++TP A LEPV + G + A+LHN Sbjct: 293 GFTAKSPKWAIAYKFPAEEVITTLNDIELSIGRTGVVTPTAILEPVKVAGTTVGRASLHN 352 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 ED I+ +DIR+GD V++++AGE+IP+VV ++++ R +P++ P CP Sbjct: 353 EDLIR-----------EKDIRIGDSVVIRKAGEIIPEVVRVVLDRRPEGTKPYNMPEICP 401 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C +VR A RC C A+ +E + HFVSR A NI+GLG++ ++ + Sbjct: 402 SCGHELVRIEGE------VALRCINPK-CDAKLVEGVIHFVSRTAMNIDGLGERIVEVLY 454 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + I AD++TL+R + + + G+ V L +I + SLER +F Sbjct: 455 NED----IINDVADLYTLERERLLT------LERMGEKKVDKLLAAIEASKTNSLERLLF 504 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIRH+GA+ + LA+ + + N +L ++ +G+ +AQ++V + Sbjct: 505 GLGIRHLGAKASMVLAREFGTMDNLKNAT----------VETLTQIDDIGEKMAQSLVTY 554 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIEN-KKLVFTGTLQKIQRHKAQEYVT 671 QN I +E L + + K +V TG L + R +A + +T Sbjct: 555 LQNEDIINLLEKLEQYGVNMRYTGVTKDDIELHPVFGEKTIVLTGKLTIMSRSEATKALT 614 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 LGA V+ +++KTDI+I G + GSK EKA LG+ + E+ Sbjct: 615 NLGAKVTNSVTKKTDIVIAGSDAGSKREKADSLGIPVWTEQ 655 >gi|289422752|ref|ZP_06424592.1| DNA ligase (NAD(+)) [Peptostreptococcus anaerobius 653-L] gi|289156931|gb|EFD05556.1| DNA ligase (NAD(+)) [Peptostreptococcus anaerobius 653-L] Length = 700 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 242/718 (33%), Positives = 368/718 (51%), Gaps = 50/718 (6%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 + I I +L I+ AR + L ++YH D YY P I D +YD + R + +PD Sbjct: 16 EDIDIGSLDIDGARDLVGDLTYTLNYHSDSYYNKDNPEISDYQYDRMMRCLIGLEDKYPD 75 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 L P+ P ++GG + H P LSL +++ E++R F R+ Sbjct: 76 LKA---PDSPSVRVGGRALEKFDQYRHQRPMLSLGNVFSEEEIRDFDRRVR----SSVSG 128 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 + + +E KIDG + + Y++G A RGDG GE+V+ I+ I TIP + + Sbjct: 129 DVNYVVEFKIDGLSVGLTYDQGVLQIGATRGDGFIGENVTDNIKTIKTIPIKIDEDRK-- 186 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 + RGEVYISK DF A+N I YANPRN A+G LR+L+ R L+ F+ L Sbjct: 187 LIARGEVYISKADFEAVNAYQIDHDLPVYANPRNLAAGSLRQLDSRLAAKRPLDIFIFNL 246 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 E+ K E + M LG +N G + ++ + R L YDIDG+V Sbjct: 247 ENMDELGIKKHSESFEYMESLGLKINKGYKLCTNIDEVIDHIEYWTDKRGQLDYDIDGMV 306 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KVD ++ LG A+SPRW ++KF ++ T+LLDI+I++GRTG LTP A LEP+ + Sbjct: 307 IKVDSLDQREVLGFTAKSPRWATAYKFPAEKKKTKLLDIEIEVGRTGTLTPTAVLEPIRL 366 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G ++ A+LHNEDYIK RDIR+GD VLV++AGE+IP+V+++ +ER Sbjct: 367 AGTSVSRASLHNEDYIK-----------ERDIRIGDTVLVQKAGEIIPQVLEVDFDERDG 415 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 F P CP+C VR AA +C ++C AQ + HFVSRDA +I Sbjct: 416 SEIVFEMPKHCPVCGEETVRLEGE------AAVKCIN-ISCPAQIRRGIIHFVSRDAMDI 468 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EG+G+ + E I+ AD++ L +E + G SV NL SI Sbjct: 469 EGMGESIVKLLLDKE----LIKDIADLYYL------DPNDLEQLERMGKKSVANLMASIE 518 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K + L R I LGI+ VG + A+ LAK Y + + LI++ Sbjct: 519 KSKTNELWRLINGLGIKFVGLKGAKLLAKAYNNLDEIMAASS----------EDLIKIDE 568 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKI 661 G I++ ++ +F++ +N +E L + E+ E K+V TGTL + Sbjct: 569 FGTIMSDSVEKFFEEDKNKETIEKLRRAGLNFENIKEEKTDRPMLFEGMKIVLTGTLPTM 628 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +R+ A++ + LG ++ +S+ TD ++ G+ GSKL+KA LGVK+++E +F+ +L Sbjct: 629 KRNDAKKIIEDLGGRATSSVSKSTDFVLAGEEAGSKLDKAISLGVKVIDEARFVSILD 686 >gi|311740579|ref|ZP_07714406.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudogenitalium ATCC 33035] gi|311304099|gb|EFQ80175.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudogenitalium ATCC 33035] Length = 689 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 204/717 (28%), Positives = 345/717 (48%), Gaps = 53/717 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +E + L QE+ H + YY +P I D+++DAL +R A+ P+LA P+ P Sbjct: 9 DLHREWNDLAQEVRRHRNLYYN-GEPAIPDADFDALFQRLLALEEEHPELAV---PDSPT 64 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G + + H +SL+ +++ +++ ++ R + + E KID Sbjct: 65 QQVGAAPSAG-EDIEHLERMMSLDNVFSAGEMQDWLDRT---------PAKTYLTELKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRGEV 191 G I + Y G+ AA RGDG GE+++A R I IP L+ PE+IE+RGEV Sbjct: 115 GLSIDLVYRNGRLTTAATRGDGTVGEEITANARVIEDIPHELTGTDEYPVPELIEIRGEV 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 Y+ DF +N+E A G+ +ANPRNAA+G LR +P + R L HGLG Sbjct: 175 YMRPEDFEEINEERAADGKDKFANPRNAAAGGLRMKDPAEVKKRRLKMVCHGLGAREGFS 234 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q++ + + G PV+ +Q + + R +++DGLV KVD+ + Sbjct: 235 PSSQHDAYKAIAAWGLPVSPYTKQVYSAKEVQDEVAHWAEHRHDAIFEMDGLVVKVDDLA 294 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+ LG +R+PRW I++K+ ++ +T+L +I++ +GRTG +TP A +EPV + G+ + Sbjct: 295 SQRALGATSRAPRWAIAYKYPPEEVTTKLKNIEVGVGRTGRVTPYAVMEPVFVSGSTVEM 354 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN+ +K + + +GD V++++AGE+IP+V+ + +R ++F Sbjct: 355 ATLHNQSEVKR-----------KGVLIGDTVIIRKAGEIIPEVLGPVREQRDGSEHEWTF 403 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C +++ A RC +C AQ RL++ SR A +IE LG++ Sbjct: 404 PENCPACGTKLA-----PQKDGDADWRCPNTQSCPAQLSARLEYLASRKALDIEALGEKG 458 Query: 491 LDFFFKSE--------DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 + + ++ A ++ + + + NL ++ Sbjct: 459 AMDLIDNGILVDESELFELTAEKLLASDVYTAKKDTKDKRSKKEGNAKVNTAGQNLLSNL 518 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + + R + SL IRHVG AR+LA Y S L V Sbjct: 519 EEVKGRDFWRVLVSLSIRHVGPIAARALASRYGSMDRLRAA----------KTEELAEVD 568 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 VG IAQ+ ++++ + V+ E + +E +V TG+L+ Sbjct: 569 GVGMTIAQSFHDWFEVDWHRTIVDKWAAAGVAMEVAAEDHKEQTLEGLTIVVTGSLENFT 628 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R A+E + G + +S+KT ++ G N GSK +KA++L + I+NE QF LL+ Sbjct: 629 RDSAKEAIVSRGGKATGSVSKKTSYLVAGANAGSKEDKARELDIPILNESQFQQLLE 685 >gi|261366975|ref|ZP_05979858.1| DNA ligase, NAD-dependent [Subdoligranulum variabile DSM 15176] gi|282571093|gb|EFB76628.1| DNA ligase, NAD-dependent [Subdoligranulum variabile DSM 15176] Length = 661 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 217/709 (30%), Positives = 343/709 (48%), Gaps = 51/709 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + EQA+K L I ++ YY P + D EYDAL R AI FPDL P Sbjct: 1 MEREQAQKRAEELRAVIEKNNRLYYDQDAPELEDFEYDALTRELKAIETEFPDLV---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P +GG + KVTH++ SL+ +++E+LR F +R+ K + +E Sbjct: 58 ESPTQHVGGTASSKFTKVTHAVKMESLQDAFSLEELRDFDSRVREAGIKP-----EYVVE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ Y G+ V + RGDG GEDV+ + I IP L N P +EVRGEV Sbjct: 113 AKIDGLSVSLEYRNGRLVRGSTRGDGMVGEDVTENLATIRDIPLQL-ENAPAFLEVRGEV 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+ F L ++ + P+ NPRNAA+G LR+ N R L+ FV L + Sbjct: 172 YMPHAAFFKLKEQQELEDKTPFKNPRNAAAGSLRQKNAKITAERGLSIFVFNLQQCEGRS 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +E L ++ LGFPV+ ++ + + +R TL +DIDG V KV++ + Sbjct: 232 FATHHETLDYIKSLGFPVSPRYSVFSSIEDAIREIQTIGELRGTLEFDIDGAVIKVNDLA 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ LG + PRW I+ K+ + + + DI++ +GRTG+LTP A +PV + G ++ Sbjct: 292 ARRVLGSTNKFPRWAIAFKYPPEVKESVVRDIEVTVGRTGVLTPTAVFDPVFLAGTSVSR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D I L + +GD + V++AG++IP+V+ + + PD++PF Sbjct: 352 ASLHNGDIISSL-----------GVGIGDTIQVRKAGDIIPEVIAVSAHG--PDSKPFMM 398 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C + VV + A RC + L HF SRDA I+GLG+ Sbjct: 399 PTVCPSCGAPVVHLQDET------ALRCVNPECPAQSL-RNLIHFASRDAMAIDGLGEAV 451 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + + AD+++L Q + + F S NL +I + +L Sbjct: 452 AIQLTEKN----LVHTVADLYSLNEEQLLT------LDKFKKKSAQNLLTAIEHSKTNNL 501 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ++ +F LGIR++G + A LA+++ S + + V G ++AQ Sbjct: 502 DKLLFGLGIRNIGDKAAALLAEHFGSMEAIRSA----------GVEQMCEVDGFGAVMAQ 551 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ EF+ + L K + + K LV TGTL + R +A+ + Sbjct: 552 SVREFFDKEGTSDLLARLEKAGVNMQW-TGTPKGTALAGKTLVVTGTLPTLSRQEAEALI 610 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 Q G S +S+KT ++ G GSKL KAQ LG+ +++E L+Q Sbjct: 611 VQNGGKASGSVSKKTSYVVAGTAAGSKLTKAQALGIPVIDEAGLYALIQ 659 >gi|298484007|ref|ZP_07002176.1| DNA ligase, NAD-dependent [Bacteroides sp. D22] gi|298269788|gb|EFI11380.1| DNA ligase, NAD-dependent [Bacteroides sp. D22] Length = 666 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 226/709 (31%), Positives = 354/709 (49%), Gaps = 51/709 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 ++++ L E+ H+ YY + P I D E+D R + A P+ D N P Sbjct: 2 DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEYK---DENSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G ++N + +V H P LSL ++ ++ F R+ + + E K D Sbjct: 59 MRVGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRVRKAL----NEDFEICCEMKYD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194 GT I++ YE GK V A RGDG G+DV+ ++ I +IP VL N P E+RGE+ + Sbjct: 115 GTSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 F LN E A +ANPRNAASG L+ N + + + G Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYLLGDNLPCDGH 234 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 YE LQ+ GF +++ R+ T + + N R LP DG+V KV+ QK Sbjct: 235 YENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKN 294 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LH Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLH 354 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER-HPDAQPFSFPSF 433 N D I+GL D+ +GD V V++ GE+IPK+ + + R + F Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFIVN 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S++VR AAH C AC Q +++HF+SR A NI+GLG + +D Sbjct: 404 CPECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDM 457 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F++ I AD++ L + G+ S N+ I + + + ER Sbjct: 458 FYR----LGLIENTADLYKLTADDIKG------LDRMGEKSAENIVTGIAQSKTVPFERV 507 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGIR VG +A+ +AK + + + Q D L+ + +G+ IAQ+I+ Sbjct: 508 IFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIAQSIL 557 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYV 670 ++ N N V L KE + R E+++S ++ + +V +G R + +E + Sbjct: 558 AYFANESNRELVNRL-KEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFIHHSRDEYKELI 616 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G +S KT I+ GDN G +KLEK ++LG+ I++E++FL L+ Sbjct: 617 EKNGGKNVGSISAKTSFILAGDNMGPAKLEKVKKLGITILSEDEFLKLI 665 >gi|255535523|ref|YP_003095894.1| DNA ligase [Flavobacteriaceae bacterium 3519-10] gi|255341719|gb|ACU07832.1| DNA ligase [Flavobacteriaceae bacterium 3519-10] Length = 667 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 215/709 (30%), Positives = 365/709 (51%), Gaps = 47/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 E ++++ +L +EI H+ YY +P I D E+D + + FP+ D N Sbjct: 2 PENIQQKIDALRKEIHQHNYSYYSLDEPTISDFEFDLKLKELQDLELQFPEF---YDNNS 58 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG++ + V H SL+ ++ DL ++ RI + + + F E K Sbjct: 59 PTLRVGGQITKNFPTVQHQFRMFSLDNSYDFNDLEEWEKRIRKTL----NEPVEFVAELK 114 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 DG I+I YE GK A RGDG G+++++ ++ I IP L + PE +RGE+Y+ Sbjct: 115 YDGASISILYENGKLNEAVTRGDGFQGDEITSNVKTISQIPMQLHGDFPERFFMRGEIYL 174 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + +F +N G P+ NPRN ASG L+ + ++ + V + A+ Sbjct: 175 THQNFEKINKRREEEGLDPFMNPRNTASGSLKMQDSGEVRKRGLSAVLYQFISENTAAQT 234 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +E+LQK + GF +++ + + ++ N R TL +DIDG+V KV++ + Q+ Sbjct: 235 HWELLQKAKSWGFRISDQAKLCADLDEVKAFINFWDENRHTLAFDIDGIVVKVNDLAQQR 294 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG A+SPRW +++K+ ++A T L + Q+GRTG +TPVA L+PV + G ++ A+L Sbjct: 295 VLGYTAKSPRWAMAYKYKAEKAETELQTVTYQVGRTGAITPVANLKPVLLAGTVVKRASL 354 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED I+ L + D V V++ GE+IPK+V + + +R+P + Sbjct: 355 HNEDIIRKL-----------GLYEHDFVYVEKGGEIIPKIVGVNLAKRNPANAEIQYIKN 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C + ++R + A H C L C Q + R+ H+VSR A NIE LG + ++ Sbjct: 404 CPECSTALIRVED------QAIHFCPNELHCPPQVIGRMIHYVSRKALNIENLGSETIEQ 457 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ + + PAD + L + Q + + + S N+ I K + I+ E+ Sbjct: 458 LYREK----LVENPADFYALTKEQ------LLPLERMAEKSAQNIITGIEKSKEIAFEKV 507 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F +GI+HVG +A+ L K + S + L++V +G IA++I Sbjct: 508 LFGIGIKHVGETVAKKLVKNFNSIDDLKNATAA----------ELVQVEDIGLKIAESIT 557 Query: 614 EFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 EF++NP N+ +E L + +S+ ++ K +FTG L R A+E V Sbjct: 558 EFFKNPENVLMIERLKSYGVKLEKGADTHEVLSNALDGKTFLFTGKLSLFTRDDAEEMVE 617 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQ 719 + G + +S+ D ++VG+ GSKL+KAQ++G + I++E+QFL LLQ Sbjct: 618 KHGGKNISAVSKNLDFLVVGEKAGSKLKKAQEIGTITILDEQQFLDLLQ 666 >gi|306835907|ref|ZP_07468900.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49726] gi|304568181|gb|EFM43753.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49726] Length = 689 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 208/723 (28%), Positives = 351/723 (48%), Gaps = 61/723 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + ++E + L QE+ H + YY +P I D+++DAL +R + P+LA P+ Sbjct: 6 NPADVQREWNDLAQEVRRHRNLYYN-GEPAIPDADFDALFQRLMDLEKQHPELAV---PD 61 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++G N + H +SL+ +++ +++ ++ R + + E Sbjct: 62 SPTQQVGATPNAG-EDIEHLERMMSLDNVFSAGEMQDWLDRT---------PAKTYLTEL 111 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVR 188 KIDG I + Y G+ AA RGDG GE+++A R I IP L+ PE+IE+R Sbjct: 112 KIDGLSIDLVYRNGRLDTAATRGDGTVGEEITANARVISDIPHELTGTDEYPVPELIEIR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247 GEVY+ DF +N+E + G+ +ANPRNAA+G LR +P + R L HGLG Sbjct: 172 GEVYMRPEDFEEINEERASDGKARFANPRNAAAGGLRMKDPAEVKKRRLRMVCHGLGARE 231 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 Q++ + + G PV+ Q ++ + + R +++DGLV KVD Sbjct: 232 GFSPSSQHDAYKAIAAWGLPVSPYTTQVHSAAEVQKEVSYWAEHRHDAIFEMDGLVVKVD 291 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + Q+QLG +R+PRW I++K+ ++ +T+L +I++ +GRTG +TP A +EPV + G+ Sbjct: 292 DLGSQRQLGATSRAPRWAIAYKYPPEEVTTKLKNIEVGVGRTGRVTPFAIMEPVFVSGST 351 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN+ +K + + +GD +++++AGE+IP+V+ + +R Sbjct: 352 VSMATLHNQSEVKR-----------KGVLIGDTIIIRKAGEIIPEVLGPVREQRDGSEYE 400 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 +SFP+ CP C + + A RC +C AQ RL++ SR +IE LG Sbjct: 401 WSFPTQCPACGTTLA-----PQKDGDADWRCPNTQSCPAQLSARLEYLASRKGLDIEALG 455 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT----------- 536 ++ ++ + +++F L + ++ D Sbjct: 456 EKGAMDLIEN----GILTDESELFELTEEKLLASDVYTAKRDTKDKRSKKEGNVKVNTAG 511 Query: 537 -NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 NL ++ + ++ R + SL IRHVG AR+LA Y S + Sbjct: 512 KNLLQNLEEVKDRDFWRVLVSLSIRHVGPIAARALAARYGSMEKLRAA----------KT 561 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655 L V VG +IA++ +++ + VE + E +E +V T Sbjct: 562 EDLAEVDGVGAVIAESFHAWFEVDWHRTIVEKWAEAGLAMEVAAEDRKEQTLEGLTIVVT 621 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 G+L+ R A+E + G + +S+KT ++ G N GSK +KA+ LGV I+NEEQF Sbjct: 622 GSLEDFTRDSAKEAIISRGGKATGSVSKKTSYLVAGANAGSKEDKARDLGVPILNEEQFH 681 Query: 716 FLL 718 LL Sbjct: 682 TLL 684 >gi|241760920|ref|ZP_04759009.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374539|gb|EER64000.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 731 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 297/733 (40%), Positives = 441/733 (60%), Gaps = 51/733 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + + LS EQA EL L IS++D Y+ P + DSEYDAL R I FPDL Sbjct: 21 LAPKDLSREQAVIELERLANLISHYDHLYHDKDNPAVPDSEYDALVLRNRRIEQFFPDLI 80 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R P+ P K+G N L K+ H LSL+ + +D+ F+ R+ RF+ K++ ++ Sbjct: 81 R---PDSPSKKVGSRPNSRLPKIAHRAAMLSLDNGFLDQDVEDFLGRVRRFFNLKENQAV 137 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEII 185 T+EPKIDG ++RYEKG A RGDG GEDV+ +R I IP+ L N PEII Sbjct: 138 ICTVEPKIDGLSCSLRYEKGILTQAVTRGDGVIGEDVTPNVRVIDDIPKTLKGDNWPEII 197 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 E+RGEVY++K+DF ALN +K +ANPRNAA+G LR+L+P R L F HG G Sbjct: 198 EIRGEVYMAKSDFAALNARQTEENKKLFANPRNAAAGSLRQLDPNITARRSLRFLAHGWG 257 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + + + A QY M++ + G V+N + +A+ ++ +Y ++++ R+ L +DIDG+VY Sbjct: 258 EATSLPADTQYGMMKMIESYGLSVSNLLARADNIGQMLDFYQKIEAERADLDFDIDGVVY 317 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 K+D+ Q++ G AR+PR+ ++HKF ++A T LLDI+IQ+GRTG+LTPVA+LEPV +G Sbjct: 318 KLDQLDWQQRFGFSARAPRFALAHKFPAEKAQTTLLDIEIQVGRTGVLTPVAKLEPVTVG 377 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++++ATLHN D I+ L A R GDRVLV+RAG+VIP++V+ + ++ D Sbjct: 378 GVVVSSATLHNSDEIERLGA-----------RPGDRVLVQRAGDVIPQIVENLTSDV--D 424 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + FP CP+C S R+ A RCTGGL C AQ++ERL HFVSR AF IE Sbjct: 425 RPIWHFPHRCPVCDSVARREEGE------VAWRCTGGLICPAQRVERLCHFVSRTAFEIE 478 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLGK ++ FF + I PADIF L +++Q + G+G++SV NL +I+K Sbjct: 479 GLGKSHIESFFADK----LIETPADIFRLFQKRQLLIER----EGWGELSVDNLISAIDK 530 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN-------IIAHNNDDWL- 596 RR + +RF+F+LGIRHVGA AR LAK Y ++ NF I+ + + + Sbjct: 531 RRKVPFDRFLFALGIRHVGAVTARDLAKSYQTWDNFKAAIDEAAHLRTILQPSSEESEEK 590 Query: 597 -------SLIR---VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 LI +P +G I +++++F+ N V LL+EV E SS Sbjct: 591 YQKRVDKELISFFHIPNMGGKIIRSLLDFFAETHNSDVVSDLLQEVQIEPLYFE-LASSP 649 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + K +VFTG+LQKI R +A+ LGA V++ +S+KT++++ G+ GSKL KA++L + Sbjct: 650 LSGKIIVFTGSLQKITRDEAKRQAENLGAKVASSVSKKTNLVVAGEAAGSKLSKAKELDI 709 Query: 707 KIMNEEQFLFLLQ 719 I++E+++ +++ Sbjct: 710 SIIDEDRWHRIVE 722 >gi|300856841|ref|YP_003781825.1| DNA ligase [Clostridium ljungdahlii DSM 13528] gi|300436956|gb|ADK16723.1| DNA ligase [Clostridium ljungdahlii DSM 13528] Length = 664 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 222/705 (31%), Positives = 353/705 (50%), Gaps = 47/705 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + L++ I+YH+D YY P + D EYD L + I P++ P+ P Sbjct: 4 EDRYNELKKIINYHNDRYYNQDNPEVSDYEYDMLMQELKNIEREHPEVI---TPDSPTQH 60 Query: 78 IGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +GG S V H +P LSL ++N ED+ +F+ + + F +E KIDG Sbjct: 61 VGGNAKRESGVLVRHRVPMLSLRDVFNKEDVEQFVDDVK-----AQFPDVEFVVETKIDG 115 Query: 137 TMITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 + +RYE GK + A RGDG GEDV+ + I + + L IP + E+RGEVY++K Sbjct: 116 LSMALRYEDGKLITAITRGDGIVYGEDVTVNAKVINDVVKSLKDKIPYL-EIRGEVYMTK 174 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 F +N+ +G+K +ANPRN A+G LR+L+ R L+ F+ + + K Sbjct: 175 QAFENVNEHQELLGKKVFANPRNCAAGTLRQLDSKVTKERNLSLFIFNVQDVRGMEFKTH 234 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E + ++ G V T I + R L YDIDG V K++ + + + Sbjct: 235 TEGYEFLKKQGIKVIENYTVCKTTGEIWDAIERIGENRGDLDYDIDGAVIKINNLAYRTE 294 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++ P+W I++K+ ++ T+LLDI + +GRTG +TPVA EP+ + G ++ ATLH Sbjct: 295 LGSTSKVPKWAIAYKYPPEEKETKLLDIQLTVGRTGRITPVAIFEPIRLCGTSVSRATLH 354 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N+D+I L D+ VGD ++V ++GE+IPK+ +I +R F FP C Sbjct: 355 NQDFIDEL-----------DVGVGDTIVVYKSGEIIPKIKKVIHEKRPEGTVKFQFPDKC 403 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S V R+ AA + C + ++R+ +FVSRD +I+G G ++ Sbjct: 404 PVCGSPVAREEG-------AADIKCTNINCPSMLVKRIINFVSRDCMDIKGFGAAYVEQL 456 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 I DI+ L + + + + L D+I + +R + Sbjct: 457 VDK----GYIDDIPDIYHLNEYRDKLVEEGII---GKEKNTDKLLDAIENSKKNEPQRLL 509 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 SLGI +VG A+ L KY+ S N D + +V +GDI A AI E Sbjct: 510 ASLGISNVGKSTAKELMKYFKSIDNLINA----------DIDEIKKVSDIGDISASAIFE 559 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 +++N N+ + L K + K + +E K V TGTL + R +A+E + + G Sbjct: 560 YFKNEDNLKIISELAKCGVNMVMNENKEEDNLLEGSKFVITGTLPSMGRTEAKELIEKHG 619 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 VS +S+KT ++ GD PGSK+ KAQ+LGVK+++E + L +L+ Sbjct: 620 GKVSGSVSKKTTYVLAGDAPGSKVTKAQELGVKVISEAELLQMLK 664 >gi|218754780|ref|ZP_03533576.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis GM 1503] gi|289763195|ref|ZP_06522573.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis GM 1503] gi|289710701|gb|EFD74717.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis GM 1503] Length = 690 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 206/723 (28%), Positives = 329/723 (45%), Gaps = 44/723 (6%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P + + ++ +L +E+ H YY PII D+E+D L RR +A+ P+L Sbjct: 4 PDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL-- 61 Query: 68 SEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P+ P +GG V H LSL+ + ++L + RI+ Sbjct: 62 -RTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAH--- 117 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIP 182 + E KIDG +++ Y +G+ A+ RGDG +GEDV+ R I +P L +P Sbjct: 118 -YLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVP 176 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 E++EVRGEV+ +DF ALN ++ G+ P+ANPRN+A+G LR+ +P R L H Sbjct: 177 EVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICH 236 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 GLG ++ +R G PV+ A G+ + R + ++IDG Sbjct: 237 GLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDG 296 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V KVDE +LQ++LG +R+PRW I++K+ ++A T+LLDI + V + Sbjct: 297 VVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIPGERRPHRADHAVCVHDAG 356 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 G + ATLHN +G D+R +R P+V+ +V R Sbjct: 357 EGGRVDVGQATLHNASR---------SAQGRADLRHRGDPQGRRR---DPEVLGPVVELR 404 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 + F P+ CP C S + + + A RC C Q ER+ H SR+ Sbjct: 405 DGSEREFIMPTTCPECGSPLAPE-----KEGDADIRCPNARGCPGQLRERVFHVASRNGL 459 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +IE LG + +++ I ++F L R T G + L + Sbjct: 460 DIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVN 515 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 ++K + L R + +L IRHVG AR+LA + S A L V Sbjct: 516 LDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAIAAA----------STDQLAAV 565 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 VG IA A+ E++ + V+ + +++V + +V TG+L Sbjct: 566 EGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGF 625 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R A+E + G + +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F LL Sbjct: 626 SRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLLADG 685 Query: 722 NTT 724 + Sbjct: 686 PAS 688 >gi|260904918|ref|ZP_05913240.1| DNA ligase, NAD-dependent [Brevibacterium linens BL2] Length = 729 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 210/746 (28%), Positives = 355/746 (47%), Gaps = 67/746 (8%) Query: 8 PIEALSIEQARKE-LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 LS AR + + L ++I YY+ P++ D+EYD L R + + FP+L Sbjct: 12 DTSDLSDATARAQAHADLVEKIEEQRAAYYKDDSPLVADAEYDDLVHRLEDLEEKFPELV 71 Query: 67 RSEDPNGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 + P +GG ++ + V H SL+ +++ E+LR + R+ + Sbjct: 72 TD---SSPTQTVGGNVDTSTFDPVEHIGRMYSLDNVFDFEELRGWYDRVR----AATSAT 124 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEI 184 F E KIDG + + Y G+ V AA RGDG GED++A +R I IP L P Sbjct: 125 SKFLCELKIDGLAVNLLYRNGELVRAATRGDGRIGEDITANVRTISDIPDHLDTDYPPAE 184 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +E+RGEV+ F LN ++ G+ P+ANPRN+A+G LR+ +P R L+ VHG+ Sbjct: 185 VEIRGEVFFPLEKFTELNAALVEEGKAPFANPRNSAAGSLRQKDPAVTAVRPLHMLVHGI 244 Query: 244 GKTS-----EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 + Q E+ ++ R G P++ + T I + R + ++ Sbjct: 245 AVWTPADDSHPEPAHQSEVYEQFRSWGLPISEYFKVLETVDEIEEFITYYGEHRHDVTHE 304 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 +DG+V K+D+ ++Q+ LG +R+PRW + K+ ++ +T+LLDI +Q+GRTG +TP A + Sbjct: 305 LDGIVIKIDDIAVQETLGYTSRAPRWATAFKYPPEEVTTKLLDIQVQVGRTGRVTPFAVM 364 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV + G+ + ATLHN +K + + +GD V +++AG+VIP+V+ +V Sbjct: 365 EPVTVAGSTVERATLHNGYEVKR-----------KGVLIGDTVTLRKAGDVIPEVLGPVV 413 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 +R F P+ CP C + + + RC +C AQ R+ + SR Sbjct: 414 AQRDGSEYEFVMPTHCPSCGTELG-----EQKAGDKDKRCPNARSCPAQLANRIFYLASR 468 Query: 479 DAFNIEGLGKQQLDFFFKSEDP-AFSIRIPADIFTLQRRQQTSTTKIENI---------- 527 AF+IE LG++ +P + + A +F L N Sbjct: 469 AAFDIEALGEEAALALTAPAEPESPPLTSEAFLFDLTAEDLAEVKIWRNKKVKGVETGER 528 Query: 528 --------------LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 + L+D ++K ++ L R + +L IRHVG AR+LA + Sbjct: 529 ELVPYFYTRPTAKKPSAPSANTKKLFDELDKAKDQDLWRVLVALSIRHVGPTAARTLAAH 588 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + + + + L V +G IA +I +++ ++ VEA + Sbjct: 589 FRTLEAIRAA----------ELEELSAVDGIGSTIAASIRDWFAVDWHVEIVEAWAEAGV 638 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 ++ +E +V TG+L R +E + G ++ +S+KTD ++ G+N Sbjct: 639 RMEDEEQETGEQTLEGLTIVATGSLSTFTRDGIKEAILGAGGKAASSVSKKTDYVVAGEN 698 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GSKLEKA+ LGV++++E+ F LL+ Sbjct: 699 AGSKLEKAESLGVRVLDEDTFRILLE 724 >gi|300214970|gb|ADJ79386.1| DNA ligase(Polydeoxyribonucleotide synthase [NAD+]) [Lactobacillus salivarius CECT 5713] Length = 672 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 238/719 (33%), Positives = 395/719 (54%), Gaps = 55/719 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + EL L +++ + YY P + DS YD +R + A PDL + Sbjct: 1 MSQKDIEMELKELRDKLNRWSNEYYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ KV+H IP LSL +++ E+L +F+ R+ ++K + ++ E Sbjct: 58 DSPSQRVGGKVLSGFTKVSHDIPMLSLGDVFSKEELIEFLERLENSVEQK----LDYSCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++ YE GKF+ + RG+G GED++ ++ I IP L+ + IEVRGE Sbjct: 114 LKIDGLAISLTYENGKFIKGSTRGNGVIGEDITENLKTIKAIPMELNEPVS--IEVRGEC 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN + A G+ +ANPRNAA+G LR+L+ +R L+ F++ L + ++ Sbjct: 172 YMPKKSFVELNTKREAEGQAVFANPRNAAAGSLRQLDTKITASRNLSTFIYYLMEPEKLG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K Q E L K+ GF VNN +Q T I +Y ++ R+ LPYDIDG+V K + F+ Sbjct: 232 IKTQTEALNKLESWGFKVNNESKQVKTKEEIFAYIDKATDQRANLPYDIDGIVLKAESFA 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q Q+G + PRW I++KF + T++LDI+ +GRTG++TP A +EPV + G + Sbjct: 292 VQSQVGNTVKVPRWAIAYKFPPDEQETKVLDIEWTVGRTGVVTPTAVMEPVTLAGTTVAR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN DY++ +DIR+GD V + +AG++IP++ ++++ +R D+ + Sbjct: 352 ASLHNPDYLR-----------EKDIRIGDTVKLHKAGDIIPEISEVVLAKRSEDSVEYQI 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C +++V + A RC C A E L HF SR+A +I GLG + Sbjct: 401 PTECPECGAKLVHLDDE------VALRCINPQ-CPALVKESLTHFASRNAMDIRGLGPRI 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + E I+ A I++L Q + + F + S NL +I+ RN S+ Sbjct: 454 IEQLYNRE----MIKDVAGIYSLTFEQLIT------LDKFKEKSANNLLTAIDNSRNNSI 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER IF LGIRHVGA++AR LA+ Y S N A+ + + +G II Sbjct: 504 ERLIFGLGIRHVGAKVARILAENYKSMDNLAKA----------KSDEISTIDSLGKIIGD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSI-------GRHEKNVSSEIENKKLVFTGTLQKIQR 663 ++ ++ + + ++ L + + E + S ++V TGTL ++R Sbjct: 554 SVEMYFADEHVMELLDELRQAGVNLEFLGKTREEQLESSTDSSFNGLRVVLTGTLDTLKR 613 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 +A+ ++ GA V+ +S+KTD++I G + GSKL KAQ+L V++MNE +F+ +++ + Sbjct: 614 SEAKSWLEAHGAKVTGSVSKKTDLLIAGHDAGSKLTKAQELNVRVMNEAEFIQQMEEES 672 >gi|332829049|gb|EGK01713.1| DNA ligase [Dysgonomonas gadei ATCC BAA-286] Length = 665 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 211/711 (29%), Positives = 347/711 (48%), Gaps = 51/711 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++++ +L +E++ H+ YY S P I D E+D + + P+ D N Sbjct: 1 MDHIKQQIEALREELNKHNHDYYVLSSPTISDFEFDKKLKELSELETLHPEYF---DANS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G ++N S +V H P LSL + ++ F R+ + ++ E K Sbjct: 58 PTQRVGSDINKSFRQVKHRYPMLSLGNTYTEAEVTDFYNRVQKGL----NDEFEIVCELK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 DGT I++ Y G+ A RGDG G+DV+A +R I +IP L N P E+RGE+ Sbjct: 114 YDGTSISLTYVNGELTQAITRGDGVQGDDVTANVRTIRSIPLRLHGNDYPAEFEIRGEIL 173 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + + F LN E +ANPRNA SG L++ +P + + Sbjct: 174 MPWSVFEDLNKERAEQEEALFANPRNAGSGTLKQQDPKIVASRKLDSYLYYMLGENLPTD 233 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 G YE L K + GF +++ ++ T I +Y + R LP DG+V KV+ + Q Sbjct: 234 GHYENLMKAKEWGFKISDATKKCKTLDEIFAYVHYWDIERKNLPVATDGIVLKVNSLTQQ 293 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG ++ PRW I+ KF ++A T L + Q+GRTG +TPVA L+ V + G + A+ Sbjct: 294 RNLGYTSKFPRWAIAFKFQAEKAVTTLESVSYQVGRTGAVTPVANLKAVKLSGTTVKRAS 353 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 L+NEDYI L D+ + D+V V++ GE+IPK+ + +R + F Sbjct: 354 LYNEDYINLL-----------DLHINDQVYVEKGGEIIPKITGVDTTKRGIFDEKVEFTK 402 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + +V+D A + C ++C Q R++HF++R A NI G + Sbjct: 403 NCPECGTPLVKDDGE------AIYYCPNDISCPPQIKGRIEHFLTRKAMNIAGGSET--- 453 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + A I AD++TL + + + + S NL DSI+ ++ R Sbjct: 454 --VEHLYNARLIHNIADLYTL------KWQDVSRLERWAEKSARNLVDSIHASVSVPYAR 505 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +++LGIR+VG +A+ LA + + L++V +GD IAQ+I Sbjct: 506 VLYALGIRYVGETVAKKLALAFPNIDALMAA----------SAEELVQVDEIGDRIAQSI 555 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEY 669 V ++ N+ V L + E VS +++ +V +GT +K R + + Sbjct: 556 VRYFSEISNVEVVNKLREFG-IQFELSEDIVSQRTEKLKGLSIVISGTFEKHSRDEYKAM 614 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + Q G S +S KT+ I+ GDN G +KLEKA+ LGV +++EE FL +++ Sbjct: 615 IEQNGGKNSGSISSKTNYILGGDNMGPAKLEKAESLGVPVISEEVFLEMIK 665 >gi|308271402|emb|CBX28010.1| DNA ligase [uncultured Desulfobacterium sp.] Length = 674 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 250/710 (35%), Positives = 396/710 (55%), Gaps = 50/710 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 K++ +L+ E+ H+ YY P I D++YD + + + +P L P+ P Sbjct: 8 DIAKKVENLKSELQKHNYHYYVMDDPQISDTQYDKMMQELIELEAKYPML---STPDSPS 64 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G E ++ HS+ LSL+ ++ D+ F R+ D I +T EPK+D Sbjct: 65 MKVGAEPVKKFEQIRHSVKMLSLDNAFSDSDILNFDRRVKEGLM--ADEQILYTAEPKMD 122 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-----RVLSLNIPEIIEVRGE 190 G + + Y+ G+ V A+ RGDG +GED+++ ++ I ++P IP +E RGE Sbjct: 123 GVAVELVYKDGRLVSASTRGDGETGEDITSNVKTIRSVPLLLQQNKKEHIIPARLEARGE 182 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V ISK F LN++M++ G +ANPRNAA+G LR+L+ R L + +G+G+ I Sbjct: 183 VIISKEGFKRLNEDMLSQGLALFANPRNAAAGSLRQLDSKVTAKRPLEIYFYGVGEVEGI 242 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 K ++ L ++ LG +N ++ + + YY E++ +RS LPYDIDG+V KVD Sbjct: 243 SCKSHWDWLYALKELGLRINPYIKPKININAVCKYYKELEQMRSGLPYDIDGMVVKVDSV 302 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+QLG +ARSPRW +++KF Q +T++LDI +Q+GRTG +TPVA LE VNIGG ++ Sbjct: 303 QYQEQLGTKARSPRWAVAYKFKAIQETTKVLDILVQVGRTGAVTPVACLETVNIGGVNVS 362 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHNED I+ +DIR+GD VLV+RAG+VIP++V +I + R+ F Sbjct: 363 RATLHNEDEIR-----------NKDIRIGDTVLVQRAGDVIPEIVKVIDSARNGSEIIFC 411 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C S+++RD + +C A+ +++HFVS+ AF+I+GLG++ Sbjct: 412 MPQNCPSCNSQLIRDEKESLIR-------CVNNSCPAKTKAQIEHFVSKRAFDIDGLGEK 464 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ F + + ADIF L + K+E + G S NL+++I K +NI+ Sbjct: 465 LINQLFDKK----YLSSYADIFYLDK------IKMEGLERMGLKSAGNLFEAIEKSKNIN 514 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RFI++LGIRHVG IA LA Y Y+ F + L + VG I+A Sbjct: 515 FARFIYALGIRHVGEHIAEILASKYEKYEKFCSAT----------YDDLKNIKGVGPIVA 564 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 Q+I++F N+ +E +L I E S+ ++ K V TGTL+ + R++A Sbjct: 565 QSIIDFLGREDNLNNIERMLNSGVI-IRYGENRKSTTLDGKIFVLTGTLESMTRNEAIIK 623 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + G +S +S+KTD ++ G +PGSK+EKA+ GV+I++E + + + Sbjct: 624 IKSFGGKISESVSKKTDYLVAGKSPGSKIEKAKAAGVEIIDENKLKIMFE 673 >gi|57650655|ref|YP_186789.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus COL] gi|81694155|sp|Q5HEL8|DNLJ_STAAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|57284841|gb|AAW36935.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus COL] Length = 667 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 242/715 (33%), Positives = 374/715 (52%), Gaps = 53/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++ L ++ + YY P + DSEYD L I P+ + Sbjct: 1 MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N +DLRKF RI ++ + E K Sbjct: 58 PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++Y G FV RGDG +GED++ ++ I IP + + +EVRGE Y+ Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLN--VEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + FL LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L ++ LGF N + N G++ Y + S R +LPYDIDG+V KV++ Q Sbjct: 231 SQSEALDELNKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++G +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V+VK+AG++IP+VV I R DA + P+ Sbjct: 351 LHNEDLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++SE I+ ADIF L + G V NL +I + ++ SLE Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLEN 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + L+ + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668 V + +N ++ L + I + K E K +V TG L ++ R++A + Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 ++ GA V++ +++ TD++I G++ GSKL KAQ LG++I E+QF+ + N+ Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667 >gi|254495534|ref|ZP_05108458.1| DNA ligase, NAD-dependent [Polaribacter sp. MED152] gi|85819890|gb|EAQ41047.1| DNA ligase, NAD-dependent [Polaribacter sp. MED152] Length = 665 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 217/706 (30%), Positives = 364/706 (51%), Gaps = 46/706 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++ + L E++ H+ YY I D E+D + D + P D N P Sbjct: 3 VQERIIELRNELNRHNYNYYVLDNATISDFEFDIKLKELDKLEQENPLFF---DANSPTQ 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + + V H SL+ ++ +DL + RI + I +T E K DG Sbjct: 60 RVGGTITKNFNTVVHKNRMYSLDNSYSKDDLLDWEKRIQKILGTT---EISYTCELKYDG 116 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I + YE G+F+ A RGDG G++V+ I+ I +IP + + E+RGE+ + + Sbjct: 117 ASINLTYENGQFIKAVTRGDGFQGDEVTNNIKTILSIPLSIQDDFVSNFEMRGEIILPLD 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N E +A G + Y NPRN ASG L+ + ++ + + T E K +E Sbjct: 177 GFNKMNQERVANGEEEYRNPRNTASGSLKLQDSAEVAKRPLDCLLYQVVTEERKYKTHFE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L++ R +GF V ++ N+ + + N + R LPY+ DG+V KV+ Q++LG Sbjct: 237 SLEQARKVGFKVPKTIKLVNSIDEVFEFVNLWDTKRQDLPYETDGIVIKVNNLQQQEELG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +++PRW I++KF +Q +T L +I Q+GRTG +TPVA L+PV + G + A+LHN Sbjct: 297 YTSKAPRWAIAYKFKAEQEATLLNEITYQVGRTGAITPVANLDPVQLAGTTVKRASLHNA 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L D+R+ D V V++ GE+IPK+V + ++R +++P + + CP Sbjct: 357 DQIEKL-----------DVRINDTVFVEKGGEIIPKIVGVDFSKRPENSEPTVYATNCPE 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + +VR A H C C+ Q R++HF+SR A +I+GLG + +D K Sbjct: 406 CGTELVRTAG------DAKHYCPNEFGCAPQITGRIQHFISRKAMDIDGLGGETVDLLRK 459 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD++ L K+ + + S NL + I K + I E+ +F+ Sbjct: 460 E----GLIQNYADLYELTVE------KVLPLERIAEKSAKNLINGIEKSKEIPFEKVLFA 509 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG +A+ LAK++ S N D+ +L+ V +GD IAQ+I++F Sbjct: 510 LGIRFVGETVAKKLAKHFKSIDNLMAA----------DFETLVAVDEIGDRIAQSIIDFS 559 Query: 617 QNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 N +I V L + E +N + +++ + V +G ++ R + ++ + G Sbjct: 560 SNLTSIQLVNRLKEAGLQLSVSAESLENQTDKLKGQIFVVSGVFHQMSRTELKKAIEDNG 619 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 VS+ +S+KT+ I+ GDN G SKL KA+ LG++I++E+ F+ + Sbjct: 620 GKVSSSISKKTNFIVAGDNMGPSKLAKAETLGIQIISEQDFINKIA 665 >gi|227501728|ref|ZP_03931777.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49725] gi|227077753|gb|EEI15716.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49725] Length = 680 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 209/719 (29%), Positives = 350/719 (48%), Gaps = 61/719 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++E + L QE+ H + YY +P I D+++DAL +R + P+LA P+ P + Sbjct: 2 QREWNDLAQEVRRHRNLYYN-GEPAIPDADFDALFQRLMDLEKQHPELAV---PDSPTQQ 57 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G N + H +SL+ +++ +++ ++ R + + E KIDG Sbjct: 58 VGATPNAG-EDIEHLERMMSLDNVFSAGEMQDWLDRT---------PAKTYLTELKIDGL 107 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRGEVYI 193 I + Y G+ AA RGDG GE+++ R I IP L+ PE+IE+RGEVY+ Sbjct: 108 SIDLVYRNGRLDTAATRGDGTVGEEITPNARVISDIPHELTGTDEYPVPELIEIRGEVYM 167 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAK 252 DF +N+E A G+ +ANPRNAA+G LR +P + R L HGLG Sbjct: 168 RPEDFEEINEERAADGKARFANPRNAAAGGLRMKDPAEVKKRRLRMVCHGLGAREGFSPS 227 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q++ + + G PV+ RQ ++ + + R +++DGLV KVD+ Q Sbjct: 228 SQHDAYKAIAAWGLPVSPYTRQVHSAAEVQEEVSYWAEHRHDAIFEMDGLVVKVDDLGSQ 287 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +QLG +R+PRW I++K+ ++ +T+L +I++ +GRTG +TP A +EPV + G+ ++ AT Sbjct: 288 RQLGATSRAPRWAIAYKYPPEEVTTKLKNIEVGVGRTGRVTPFAIMEPVFVSGSTVSMAT 347 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN+ +K + + +GD +++++AGE+IP+V+ + +R +SFP+ Sbjct: 348 LHNQSEVKR-----------KGVLIGDTIIIRKAGEIIPEVLGPVREQRDGSEYEWSFPT 396 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + + A RC +C AQ RL++ SR +IE LG++ Sbjct: 397 QCPACGTTLA-----PQKDGDADWRCPNTQSCPAQLSARLEYLASRKGLDIEALGEKGAM 451 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT------------NLYD 540 ++ + +++F L + ++ D NL Sbjct: 452 DLIEN----GILTDESELFELTEEKLLASDVYTAKRDTKDKRSKKEGNVKVNTAGKNLLQ 507 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 ++ + ++ R + SL IRHVG AR+LA Y S + L Sbjct: 508 NLEEVKDRDFWRVLVSLSIRHVGPIAARALAARYGSMEKLRAA----------KTEDLAE 557 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 V VG +IA++ +++ + VE + E +E +V TG+L+ Sbjct: 558 VDGVGAVIAESFHAWFEVDWHRTIVEKWAEAGLAMEVAAEDRKEQTLEGLTIVVTGSLED 617 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R A+E + G + +S+KT ++ G N GSK +KA+ LGV I+NEEQF LL Sbjct: 618 FTRDSAKEAIISRGGKATGSVSKKTSYLVAGANAGSKEDKARDLGVPILNEEQFHTLLN 676 >gi|325288902|ref|YP_004265083.1| DNA ligase [Syntrophobotulus glycolicus DSM 8271] gi|324964303|gb|ADY55082.1| DNA ligase [Syntrophobotulus glycolicus DSM 8271] Length = 671 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 242/694 (34%), Positives = 357/694 (51%), Gaps = 49/694 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L+ L+ +I D YY P I D EYD L R I A P+ P+ P ++ Sbjct: 13 ERLNQLKTQIEEADYRYYVLDDPQITDKEYDLLMRELVEIEGAHPEWV---SPDSPSQRV 69 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + KV H P LSL+ + E+L +F R+ + +E KIDG Sbjct: 70 GGGPSAQFAKVRHREPLLSLDNAFGREELAEFDRRVRGVV-----PDAEYVVELKIDGLT 124 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-EIIEVRGEVYISKND 197 + + YE+G AA RGDG +GE+++A +R I ++P L +++RGE Y+ K Sbjct: 125 VALTYEEGILTRAATRGDGETGEEITANVRTIKSVPLSLRSRPAAGRLDIRGEGYLPKES 184 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYE 256 F+ LN E G+ +ANPRNA +G LR+L+ R L +F + L + +I K Q E Sbjct: 185 FVRLNREREEEGQPLFANPRNAGAGSLRQLDSRITAGRKLGYFAYQLIQAEQIGLKTQAE 244 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +LQ ++ GF VN+ + + ++ Y EM R LPY+IDGLV KV+ F Q++LG Sbjct: 245 VLQTLKEWGFQVNDSYKIFSKMEKVMEYCQEMTEERHQLPYEIDGLVIKVNRFDQQRELG 304 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW I++KF +Q T + IDI +GRTG+LTP A ++ V + G+ + ATLHN Sbjct: 305 FTAKSPRWAIAYKFPAEQVETVVKSIDINVGRTGVLTPTAIMQEVFVAGSTVARATLHNL 364 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ +DIR+GD VL+ +AG+VIP+++ I +R F+ P CP Sbjct: 365 DNIR-----------EKDIRIGDHVLLHKAGDVIPEIIKSIPEKRTGREMIFAMPESCPA 413 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S VVR AA+RC ++C A+Q E L HFVSRDA NIEGLG + Sbjct: 414 CDSPVVRLEGE------AAYRC-QNISCPARQREALFHFVSRDAMNIEGLGPAIIVQLLD 466 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I A ++ L+ Q EN+ G S NL +I + L IF+ Sbjct: 467 K----GLIDDAAGLYDLRHEQL------ENLERMGKKSADNLIKAIEASKTRGLAPLIFA 516 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR+VG + R LA+ Y S + + L VP +G I+A +I F+ Sbjct: 517 LGIRNVGIKAGRVLAQKYGSMEKLQEAGE----------DELCEVPDIGGIMAASITSFF 566 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 ++ N + L K + + S + +V TGTL+ R + +E + G Sbjct: 567 RDRANRDFIRRLQKAGVRMTDSRQAS-SRLFAGQSIVVTGTLRSWDRREIEELIETNGGK 625 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 SA +S+KT ++ G+NPGSK +KAQ LGV + + Sbjct: 626 ASASVSKKTSFVLCGENPGSKADKAQALGVPVYS 659 >gi|302333569|gb|ADL23762.1| DNA ligase (polydeoxyribonucleotide syntase) [Staphylococcus aureus subsp. aureus JKD6159] Length = 667 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 242/715 (33%), Positives = 374/715 (52%), Gaps = 53/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++ L ++ + YY P + DSEYD L I P+ + Sbjct: 1 MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N +DLRKF RI ++ + E K Sbjct: 58 PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++Y G FV RGDG +GED++ ++ I IP + + +EVRGE Y+ Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLN--VEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + FL LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L ++ LGF N + N G++ Y + S R +LPYDIDG+V KV++ Q Sbjct: 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++G +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V+VK+AG++IP+VV I R DA + P+ Sbjct: 351 LHNEDLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++SE I+ ADIF L + G V NL +I + ++ SLE Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLEN 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + L+ + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668 V + +N ++ L + I + K E K +V TG L ++ R++A + Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 ++ GA V++ +++ TD++I G++ GSKL KAQ LG++I E+QF+ + N+ Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNESNS 667 >gi|300870442|ref|YP_003785313.1| NAD-dependent DNA ligase [Brachyspira pilosicoli 95/1000] gi|300688141|gb|ADK30812.1| NAD-dependent DNA ligase [Brachyspira pilosicoli 95/1000] Length = 663 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 238/707 (33%), Positives = 383/707 (54%), Gaps = 48/707 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++E+ARK++ L I+YH+ YY P I D EYD L R + + FP+L + Sbjct: 1 MNLEEARKKIEQLTATINYHNKLYYTDDNPEIEDYEYDKLFRELENLEREFPELKKD--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P NK+GG + K H I SL + N E+ +F R+ + + I +T+E Sbjct: 58 DSPTNKVGGTILEKFEKFEHPIAMYSLSNVMNEEEFLEFDNRMQKELNA---SKIKYTVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG + + YEKGK A+ RGDG GE+V+ ++ + +P+ + + + VRGE Sbjct: 115 NKFDGLALELIYEKGKLTVASTRGDGQVGENVTNNVKMMNNVPKSIKE--TKKLIVRGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 I+K DF LN E + P+AN RNAASG LR+L+ ++ R L FF + + + Sbjct: 173 LITKKDFEILNKEREELEEIPFANARNAASGGLRQLDSSESKKRRLKFFAYQIANYKDFD 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +Y+ ++ + LGF GV ++ Y ++ RS + Y+IDGLV KVD+ Sbjct: 233 LTNEYKSMEFLSELGF-TVEGVHPNIDAKKVLETYYNIQEKRSKMDYEIDGLVIKVDDVK 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG +R+PR+ ++ KF ++ T L +I++Q+GRTG LTPVA+LEPV +GG ++N Sbjct: 292 YQEKLGFLSRAPRFAVAFKFKPEEKETVLKNIEVQVGRTGALTPVAKLEPVQVGGVTVSN 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 TLHN + IK +DIR+GD V+V R+G+VIPK+V +++ +R D++ F F Sbjct: 352 VTLHNPNEIKS-----------KDIRIGDTVVVIRSGDVIPKIVRVVLEKRPSDSKVFEF 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C RC C ++ +++FVS+ A N+E +GK+ Sbjct: 401 PKKCPVCGGETAVTDG------DVIVRCIN-EECPSKITRYIEYFVSKPAMNMERIGKEW 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F KS ++ PAD++ + R G+ + + +SI +N +L Sbjct: 454 IAVFTKS----GLVKTPADLYKITRDDLFKF------ERMGEKLASYMLESIENSKNTTL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +RFI++LGIR VG A LAKY+ S +NF + L + +G+I A+ Sbjct: 504 KRFIYALGIRQVGETTADLLAKYFTSVENFKKAT----------IDDLQNIEGIGEISAK 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +I +F N + + ++ LL + V S + K +V TG+++ R A+E Sbjct: 554 SIYDFLHNKKTLKLIDDLLDAGVNPVFEKLTTVESPLTGKNVVITGSIEGFTRTSAKETA 613 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +LGA V + +S+ TDI+IVG+ GSKL+KAQ+LG++IM + F+ L Sbjct: 614 ERLGATVQSAVSKNTDILIVGEKAGSKLKKAQELGIQIMEADDFIKL 660 >gi|258645494|ref|ZP_05732963.1| DNA ligase, NAD-dependent [Dialister invisus DSM 15470] gi|260402847|gb|EEW96394.1| DNA ligase, NAD-dependent [Dialister invisus DSM 15470] Length = 669 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 216/706 (30%), Positives = 358/706 (50%), Gaps = 46/706 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + K+ L +++ YH YY KP I D E+D L R + +P++ P Sbjct: 1 MVTAEIIKKAEELRKKLRYHSYLYYVLDKPEITDFEFDRLYRSLVDLEKEYPEIV---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG+ + K+ P LSL ++ E+LR F R++ + + E Sbjct: 58 DSPTQRVGGKASDDFRKIPFKKPMLSLANAFSAEELRDFDRRVHGGIGAM---PVEYITE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG + + YE G + RGDG GEDV++ ++ I TIP + N P +EVRGEV Sbjct: 115 LKIDGLSMNLIYENGSLMQGLTRGDGKVGEDVTSNVKTIKTIPLYI-ENAPAYMEVRGEV 173 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+ + F+ALN+E G P+AN RNAA+G LR+L+P R L+FF + LG + Sbjct: 174 YMPRKSFIALNEERDEAGMMPFANCRNAAAGSLRQLDPKVTAARNLDFFAYALGAEEGLD 233 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q ++L +++ F VN R+ ++ G+++ E + R L YD DG+V KV++F Sbjct: 234 ISSQDDLLLQLKKFHFRVNPHYRKWDSIEGVITGVREWEKKRRELDYDTDGMVIKVNDFR 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+ LG + P+W I++K+ ++A T++ I + +GRTG+LTP A L PV + G + Sbjct: 294 QQELLGATGKDPKWAIAYKYPPEEAVTKIEKIVVSMGRTGVLTPSADLTPVRLAGTTVKR 353 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D+I+ +DIR GD V++ +AGE+IP++ ++ +R+ + F Sbjct: 354 ATLHNLDFIR-----------EKDIREGDTVIIYKAGEIIPEIAAVLKEKRNGSEKEFEM 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C + + R AA RC AC E+L HF SRDA +IEGLG Sbjct: 403 PENCPVCGNSIRRIDTE------AAFRCINP-ACGGVVREKLIHFASRDAMDIEGLGPAV 455 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + AD + L+ I G+ S NL +I + L Sbjct: 456 VDSLLAYR----LVADAADFYALKEDDL------RQIERMGEKSAANLITAIRASKERGL 505 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + +F LGIR +G + + A Y+ + D ++ +G I A+ Sbjct: 506 AKLLFGLGIRFLGEKGSELAAHYFHTIDAIMAA----------DVETIEETEGIGKITAK 555 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ +++ + +NI + L E++ S + +V TG L + R +A E + Sbjct: 556 SLYDYFHDEKNIEMINKLKNAGVLMEEIKEESESGMFSGESVVLTGKLAVMGRREASELI 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +LG + ++ T +++ G++ GSKLEKA+ G+ +++E++FL Sbjct: 616 KRLGGTTQSSVTNITTLVVAGEDAGSKLEKARAKGIPVIDEQEFLK 661 >gi|49484145|ref|YP_041369.1| DNA ligase [Staphylococcus aureus subsp. aureus MRSA252] gi|257426036|ref|ZP_05602458.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus 55/2053] gi|257428709|ref|ZP_05605104.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus 65-1322] gi|257431319|ref|ZP_05607695.1| DNA ligase [Staphylococcus aureus subsp. aureus 68-397] gi|257434037|ref|ZP_05610388.1| DNA ligase [Staphylococcus aureus subsp. aureus E1410] gi|282904535|ref|ZP_06312420.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus C160] gi|282906308|ref|ZP_06314160.1| DNA ligase [Staphylococcus aureus subsp. aureus Btn1260] gi|282909224|ref|ZP_06317040.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911529|ref|ZP_06319329.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus WBG10049] gi|282925143|ref|ZP_06332803.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus C101] gi|283958665|ref|ZP_06376111.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus A017934/97] gi|293507779|ref|ZP_06667621.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus 58-424] gi|293510281|ref|ZP_06668987.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus M809] gi|293539336|ref|ZP_06672015.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus M1015] gi|295428486|ref|ZP_06821113.1| DNA ligase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590042|ref|ZP_06948682.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus MN8] gi|81650789|sp|Q6GFF3|DNLJ_STAAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|49242274|emb|CAG40981.1| DNA ligase [Staphylococcus aureus subsp. aureus MRSA252] gi|257271179|gb|EEV03336.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus 55/2053] gi|257274353|gb|EEV05865.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus 65-1322] gi|257277968|gb|EEV08624.1| DNA ligase [Staphylococcus aureus subsp. aureus 68-397] gi|257280963|gb|EEV11107.1| DNA ligase [Staphylococcus aureus subsp. aureus E1410] gi|282313101|gb|EFB43499.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus C101] gi|282324538|gb|EFB54850.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus WBG10049] gi|282326792|gb|EFB57089.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330505|gb|EFB60022.1| DNA ligase [Staphylococcus aureus subsp. aureus Btn1260] gi|282595091|gb|EFC00058.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus C160] gi|283789705|gb|EFC28527.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus A017934/97] gi|290919871|gb|EFD96940.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus M1015] gi|291094842|gb|EFE25110.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus 58-424] gi|291466645|gb|EFF09165.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus M809] gi|295127468|gb|EFG57107.1| DNA ligase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577170|gb|EFH95884.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus MN8] gi|312437629|gb|ADQ76700.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus TCH60] gi|315193434|gb|EFU23831.1| DNA ligase [Staphylococcus aureus subsp. aureus CGS00] Length = 667 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 241/715 (33%), Positives = 374/715 (52%), Gaps = 53/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++ L ++ + YY P + DSEYD L I P+ + Sbjct: 1 MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEFKTV---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N +DLRKF RI ++ + E K Sbjct: 58 PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++Y G FV RGDG +GED++ ++ I IP + + +EVRGE Y+ Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLN--VEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + FL LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L ++ LGF N + + G++ Y + S R +LPYDIDG+V KV++ Q Sbjct: 231 SQSEALDELDKLGFTTNKNRARVSDIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++G +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V+VK+AG++IP+VV I R DA + P+ Sbjct: 351 LHNEDLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++SE I+ ADIF L + G V NL +I + ++ SLE Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLEN 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + L+ + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668 V + +N ++ L + I + K E K +V TG L ++ R++A + Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 ++ GA V++ +++ TD++I G++ GSKL KAQ LG++I E+QF+ + N+ Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667 >gi|260753112|ref|YP_003226005.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552475|gb|ACV75421.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 731 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 294/735 (40%), Positives = 439/735 (59%), Gaps = 51/735 (6%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 + + LS EQA EL L IS++D Y+ P + DSEYDAL R I FPD Sbjct: 19 PALAPKDLSREQAVIELERLANLISHYDHLYHDKDNPAVPDSEYDALVLRNRRIEQFFPD 78 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 L R P+ P K+G N L K+ H LSL+ + +D+ F+ R+ RF+ K++ Sbjct: 79 LIR---PDSPSKKVGSRPNSRLPKIAHRAAMLSLDNGFLDQDVEDFLGRVRRFFNLKENQ 135 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPE 183 ++ T+EPKIDG ++RYEKG A RGDG GEDV+ +R I IP+ L N PE Sbjct: 136 AVICTVEPKIDGLSCSLRYEKGILTQAVTRGDGVIGEDVTPNVRVIDDIPKTLKGDNWPE 195 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 IIE+RGEVY++K+DF ALN +K +ANPRNAA+G LR+L+P R L F HG Sbjct: 196 IIEIRGEVYMAKSDFAALNARQTEENKKLFANPRNAAAGSLRQLDPNITARRSLRFLAHG 255 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G+ + + A QY M++ + G V+N + +A+ ++ +Y ++++ R+ L +DIDG+ Sbjct: 256 WGEATSLPADTQYGMMKVIESYGLSVSNLLARADNIGQMLDFYQKIEAERADLDFDIDGV 315 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 VYK+D+ Q++ G AR+PR+ ++HKF ++A T LLDI+IQ+GRTG+LTPVA+LEPV Sbjct: 316 VYKLDQLDWQQRFGFSARAPRFALAHKFPAEKAQTTLLDIEIQVGRTGVLTPVAKLEPVT 375 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 +GG ++++ATLHN D I+ L +R DRVLV+RAG+VIP++V+ + + Sbjct: 376 VGGVVVSSATLHNSDEIERL-----------GVRPEDRVLVQRAGDVIPQIVENLTPDV- 423 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 D + FP CP+C S R+ A RCTGGL C AQ++ERL HFVSR AF Sbjct: 424 -DRPIWHFPHRCPVCDSVARREEGE------VAWRCTGGLICPAQRVERLCHFVSRTAFE 476 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+GLGK ++ FF + I PADIF L +++Q + G+G++SV NL +I Sbjct: 477 IDGLGKSHIESFFADK----LIETPADIFRLFQKRQLLIER----EGWGELSVDNLISAI 528 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN-------IIAHNNDDW 595 +KRR + +RF+F+LGIRHVGA AR LAK Y ++ NF I+ + + + Sbjct: 529 DKRRKVPFDRFLFALGIRHVGAVTARDLAKSYQTWDNFKAAIDEAAHLRTILQPSSEESE 588 Query: 596 L--------SLIR---VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 LI +P +G I +++++F+ N V LL+EV E S Sbjct: 589 EKYQKRVDKELISFFHIPNMGGKIIRSLLDFFAETHNSDVVSDLLQEVQIEPLYFE-LAS 647 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 S + K +VFTG+LQKI R +A+ LGA V++ +S+KT++++ G+ GSKL KA++L Sbjct: 648 SPLSGKIIVFTGSLQKITRDEAKRQAENLGAKVASSVSKKTNLVVAGEAAGSKLSKAKEL 707 Query: 705 GVKIMNEEQFLFLLQ 719 + I++E+++ +++ Sbjct: 708 DISIIDEDRWHRIVE 722 >gi|90962320|ref|YP_536236.1| NAD-dependent DNA ligase [Lactobacillus salivarius UCC118] gi|123391334|sp|Q1WSH6|DNLJ_LACS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|90821514|gb|ABE00153.1| NAD-dependent DNA ligase [Lactobacillus salivarius UCC118] Length = 672 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 239/719 (33%), Positives = 395/719 (54%), Gaps = 55/719 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + EL L +++ + YY P + DS YD +R + A PDL + Sbjct: 1 MSQKDIEMELKELRNKLNRWSNEYYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ KV+H IP LSL +++ E+L +F+ R+ ++K + ++ E Sbjct: 58 DSPSQRVGGKVLSGFTKVSHDIPMLSLGDVFSKEELIEFLERLENSVEQK----LDYSCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++ YE GKF+ + RG+G GED++ ++ I IP L+ + IEVRGE Sbjct: 114 LKIDGLAISLTYENGKFIKGSTRGNGVIGEDITENLKTIKAIPMELNEPVS--IEVRGEC 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN + A G+ +ANPRNAA+G LR+L+ +R L+ F++ L + ++ Sbjct: 172 YMPKKSFVELNTKREAEGQAVFANPRNAAAGSLRQLDTKITASRNLSTFIYYLMEPEKLG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K Q E L K+ GF VNN +Q T I +Y ++ R+ LPYDIDG+V K + F+ Sbjct: 232 IKTQTEALNKLESWGFKVNNESKQVKTKEEIFAYIDKATDQRANLPYDIDGIVLKAESFA 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q Q+G + PRW I++KF + T++LDI+ +GRTG++TP A +EPV + G + Sbjct: 292 VQSQVGNTVKVPRWAIAYKFPPDEQETKVLDIEWTVGRTGVVTPTAVMEPVTLAGTTVAR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN DY+K +DIR+GD V + +AG++IP++ ++++ +R D+ + Sbjct: 352 ASLHNPDYLK-----------EKDIRIGDTVKLHKAGDIIPEISEVVLAKRTEDSVEYQI 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C +++V + A RC C A E L HF SR+A +I GLG + Sbjct: 401 PTECPECGAKLVHLDDE------VALRCINPQ-CPALVKESLTHFASRNAMDIRGLGPRI 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + E I+ A I++L Q + + F + S NL +I+ RN S+ Sbjct: 454 IEQLYNRE----MIKDVAGIYSLTFEQLIT------LDKFKEKSANNLLTAIDNSRNNSI 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER IF LGIRHVGA++AR LA+ Y S N A+ + + +G II Sbjct: 504 ERLIFGLGIRHVGAKVARILAENYKSMDNLAKA----------KSDEISTIDSLGKIIGD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSI-------GRHEKNVSSEIENKKLVFTGTLQKIQR 663 ++ ++ + + ++ L + + E + S ++V TGTL ++R Sbjct: 554 SVEMYFADEHVMELLDELRQAGVNLEFLGKTREEQLESSTDSSFNGLRVVLTGTLDTLKR 613 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 +A+ ++ GA V+ +S+KTD++I G + GSKL KAQ+L V++MNE +F+ +++ + Sbjct: 614 SEAKSWLEAHGAKVTGSVSKKTDLLIAGHDAGSKLTKAQELNVRVMNEAEFIQQMEEES 672 >gi|21283574|ref|NP_646662.1| DNA ligase [Staphylococcus aureus subsp. aureus MW2] gi|49486723|ref|YP_043944.1| DNA ligase [Staphylococcus aureus subsp. aureus MSSA476] gi|87161485|ref|YP_494537.1| DNA ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195803|ref|YP_500613.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222054|ref|YP_001332876.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus str. Newman] gi|161510127|ref|YP_001575786.1| DNA ligase (NAD(+)) [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140357|ref|ZP_03564850.1| DNA ligase (NAD(+)) [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253734986|ref|ZP_04869151.1| DNA ligase [Staphylococcus aureus subsp. aureus TCH130] gi|258451030|ref|ZP_05699066.1| DNA ligase, NAD-dependent [Staphylococcus aureus A5948] gi|282923243|ref|ZP_06330924.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9765] gi|284024951|ref|ZP_06379349.1| DNA ligase [Staphylococcus aureus subsp. aureus 132] gi|294849453|ref|ZP_06790195.1| DNA ligase [Staphylococcus aureus A9754] gi|297208934|ref|ZP_06925338.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300913009|ref|ZP_07130447.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus TCH70] gi|304379092|ref|ZP_07361839.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|75410712|sp|Q9AIU7|DNLJ_STAAU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|81649030|sp|Q6G829|DNLJ_STAAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|81704301|sp|Q7A0H1|DNLJ_STAAW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123098079|sp|Q2G1Y0|DNLJ_STAA8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123749595|sp|Q2FFJ1|DNLJ_STAA3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190359293|sp|A6QID2|DNLJ_STAAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190359294|sp|A8Z2R8|DNLJ_STAAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|13182984|gb|AAK15020.1| DNA ligase [Staphylococcus aureus] gi|21205015|dbj|BAB95710.1| DNA ligase [Staphylococcus aureus subsp. aureus MW2] gi|49245166|emb|CAG43632.1| DNA ligase [Staphylococcus aureus subsp. aureus MSSA476] gi|87127459|gb|ABD21973.1| DNA ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203361|gb|ABD31171.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374854|dbj|BAF68114.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus str. Newman] gi|160368936|gb|ABX29907.1| DNA ligase (NAD(+)) [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253727168|gb|EES95897.1| DNA ligase [Staphylococcus aureus subsp. aureus TCH130] gi|257861272|gb|EEV84084.1| DNA ligase, NAD-dependent [Staphylococcus aureus A5948] gi|269941376|emb|CBI49773.1| DNA ligase [Staphylococcus aureus subsp. aureus TW20] gi|282593154|gb|EFB98153.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9765] gi|294823590|gb|EFG40017.1| DNA ligase [Staphylococcus aureus A9754] gi|296886424|gb|EFH25353.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|298695246|gb|ADI98468.1| DNA ligase [Staphylococcus aureus subsp. aureus ED133] gi|300885787|gb|EFK80994.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus TCH70] gi|302751777|gb|ADL65954.1| DNA ligase (polydeoxyribonucleotide syntase) [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342327|gb|EFM08219.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|320139715|gb|EFW31584.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus MRSA131] gi|320142368|gb|EFW34182.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus MRSA177] gi|323439848|gb|EGA97564.1| DNA ligase [Staphylococcus aureus O11] gi|323443011|gb|EGB00632.1| DNA ligase [Staphylococcus aureus O46] gi|329314581|gb|AEB88994.1| DNA ligase [Staphylococcus aureus subsp. aureus T0131] gi|329728576|gb|EGG65006.1| DNA ligase (NAD+) [Staphylococcus aureus subsp. aureus 21189] gi|329731482|gb|EGG67845.1| DNA ligase (NAD+) [Staphylococcus aureus subsp. aureus 21193] Length = 667 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 242/715 (33%), Positives = 374/715 (52%), Gaps = 53/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++ L ++ + YY P + DSEYD L I P+ + Sbjct: 1 MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N +DLRKF RI ++ + E K Sbjct: 58 PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++Y G FV RGDG +GED++ ++ I IP + + +EVRGE Y+ Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLN--VEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + FL LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L ++ LGF N + N G++ Y + S R +LPYDIDG+V KV++ Q Sbjct: 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++G +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V+VK+AG++IP+VV I R DA + P+ Sbjct: 351 LHNEDLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++SE I+ ADIF L + G V NL +I + ++ SLE Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLEN 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + L+ + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668 V + +N ++ L + I + K E K +V TG L ++ R++A + Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 ++ GA V++ +++ TD++I G++ GSKL KAQ LG++I E+QF+ + N+ Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667 >gi|15924894|ref|NP_372428.1| DNA ligase [Staphylococcus aureus subsp. aureus Mu50] gi|15927478|ref|NP_375011.1| DNA ligase (polydeoxyribonucleotide syntase) [Staphylococcus aureus subsp. aureus N315] gi|148268377|ref|YP_001247320.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus JH9] gi|150394439|ref|YP_001317114.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus JH1] gi|156980220|ref|YP_001442479.1| DNA ligase [Staphylococcus aureus subsp. aureus Mu3] gi|253316913|ref|ZP_04840126.1| DNA ligase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006691|ref|ZP_05145292.2| DNA ligase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|258408884|ref|ZP_05681166.1| DNA ligase [Staphylococcus aureus A9763] gi|258430016|ref|ZP_05688386.1| DNA ligase [Staphylococcus aureus A9299] gi|258443466|ref|ZP_05691808.1| DNA ligase [Staphylococcus aureus A8115] gi|258445324|ref|ZP_05693515.1| DNA ligase [Staphylococcus aureus A6300] gi|258447888|ref|ZP_05696022.1| DNA ligase [Staphylococcus aureus A6224] gi|258453321|ref|ZP_05701306.1| DNA ligase [Staphylococcus aureus A5937] gi|269203557|ref|YP_003282826.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus ED98] gi|282894571|ref|ZP_06302799.1| DNA ligase, NAD-dependent [Staphylococcus aureus A8117] gi|282928077|ref|ZP_06335684.1| DNA ligase, NAD-dependent [Staphylococcus aureus A10102] gi|295407285|ref|ZP_06817084.1| DNA ligase [Staphylococcus aureus A8819] gi|296275664|ref|ZP_06858171.1| DNA ligase [Staphylococcus aureus subsp. aureus MR1] gi|297246190|ref|ZP_06930041.1| DNA ligase [Staphylococcus aureus A8796] gi|81705420|sp|Q7A4Q5|DNLJ_STAAN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|81781309|sp|Q99SY3|DNLJ_STAAM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166216246|sp|A7X432|DNLJ_STAA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190359291|sp|A6U309|DNLJ_STAA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190359292|sp|A5IU71|DNLJ_STAA9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|13701697|dbj|BAB42990.1| DNA ligase [Staphylococcus aureus subsp. aureus N315] gi|14247676|dbj|BAB58066.1| DNA ligase [Staphylococcus aureus subsp. aureus Mu50] gi|147741446|gb|ABQ49744.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus JH9] gi|149946891|gb|ABR52827.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus JH1] gi|156722355|dbj|BAF78772.1| DNA ligase [Staphylococcus aureus subsp. aureus Mu3] gi|257840331|gb|EEV64793.1| DNA ligase [Staphylococcus aureus A9763] gi|257849610|gb|EEV73578.1| DNA ligase [Staphylococcus aureus A9299] gi|257851351|gb|EEV75291.1| DNA ligase [Staphylococcus aureus A8115] gi|257855842|gb|EEV78766.1| DNA ligase [Staphylococcus aureus A6300] gi|257858820|gb|EEV81689.1| DNA ligase [Staphylococcus aureus A6224] gi|257864529|gb|EEV87272.1| DNA ligase [Staphylococcus aureus A5937] gi|262075847|gb|ACY11820.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus ED98] gi|282590141|gb|EFB95222.1| DNA ligase, NAD-dependent [Staphylococcus aureus A10102] gi|282763058|gb|EFC03190.1| DNA ligase, NAD-dependent [Staphylococcus aureus A8117] gi|285817585|gb|ADC38072.1| DNA ligase [Staphylococcus aureus 04-02981] gi|294967860|gb|EFG43890.1| DNA ligase [Staphylococcus aureus A8819] gi|297176897|gb|EFH36154.1| DNA ligase [Staphylococcus aureus A8796] gi|312830277|emb|CBX35119.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129286|gb|EFT85280.1| DNA ligase [Staphylococcus aureus subsp. aureus CGS03] gi|329724802|gb|EGG61306.1| DNA ligase (NAD+) [Staphylococcus aureus subsp. aureus 21172] Length = 667 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 242/715 (33%), Positives = 374/715 (52%), Gaps = 53/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++ L ++ + YY P + DSEYD L I P+ + Sbjct: 1 MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N +DLRKF RI ++ + E K Sbjct: 58 PTVRVGGEAQASFKKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++Y G FV RGDG +GED++ ++ I IP + + +EVRGE Y+ Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLN--VEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + FL LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L ++ LGF N + N G++ Y + S R +LPYDIDG+V KV++ Q Sbjct: 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++G +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V+VK+AG++IP+VV I R DA + P+ Sbjct: 351 LHNEDLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++SE I+ ADIF L + G V NL +I + ++ SLE Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLEN 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + L+ + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668 V + +N ++ L + I + K E K +V TG L ++ R++A + Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 ++ GA V++ +++ TD++I G++ GSKL KAQ LG++I E+QF+ + N+ Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667 >gi|188997338|ref|YP_001931589.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium sp. YO3AOP1] gi|254781435|sp|B2V5U1|DNLJ_SULSY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|188932405|gb|ACD67035.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium sp. YO3AOP1] Length = 704 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 255/730 (34%), Positives = 394/730 (53%), Gaps = 57/730 (7%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + + L+ E+A+K + L + I +HD YY ++P+I D EYD L + I +P+L Sbjct: 20 LDAKKLTKEEAKKIVEDLREVIRFHDWRYYVLAQPVISDYEYDKLFKLLKDIEGKYPELI 79 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P+ P ++ E+ +V H P LSL+ +N DLR F R+ + + Sbjct: 80 ---TPDSPTQRVPSEITKVFPQVKHLTPMLSLDNSYNEADLRDFDRRVRELTGL---DKV 133 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-- 184 +++EPK DG I++ YEK FV A RGDG GE+++ ++ I TIP + I Sbjct: 134 EYSVEPKFDGAGISLIYEKDLFVRGATRGDGEVGEEITNNLKVIKTIPLSAKFSQYGIDK 193 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL 243 +E+RGEV I K+ F +N+E + G +ANPRNAA+G +R +P++ R L FV+ + Sbjct: 194 VEIRGEVLIRKDLFKKMNEERLEEGLPLFANPRNAAAGSIRLQDPSEVAKRNLEAFVYQI 253 Query: 244 GKTSEI-------FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTL 295 + K + ++ + LGF ++ ++ Y E + R Sbjct: 254 TYAEKDGKNLLGTVLKKHSDNIKMLHELGFKTPYPVMKVCIGIEEVIQYCEEWQRKRDAY 313 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 PY+IDG+V KV++ SL +LG + PRW I+ KF +QA+T+++++ Q+GRTG +TPV Sbjct: 314 PYEIDGMVIKVNDISLYDKLGFTSHHPRWAIAFKFKARQATTKIINVVFQVGRTGAITPV 373 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 A+LEPV IGG ++++ +L NED+I+ +DIR+GD VLV+RAG+VIP VV Sbjct: 374 AKLEPVEIGGVIVSSVSLINEDFIR-----------EKDIRIGDTVLVERAGDVIPYVVM 422 Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475 +I R + +P FP CP C S +V+ A +RC + C AQ +ERL HF Sbjct: 423 VIKEARTGNEKPIEFPKTCPSCGSPIVKPPGE------AVYRCVN-INCPAQVIERLIHF 475 Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 S+DA +I+GL + + F+ + +R DI+ L I+NI GFG SV Sbjct: 476 ASKDAMDIKGLSEATIRKFYNLK----LVRTIPDIYRL------DYNLIKNIPGFGPKSV 525 Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 NL ++I + + L R I+ LGIR+VG A++LA + N Sbjct: 526 ENLKNAIEESKKRPLYRLIYGLGIRYVGEVTAKTLASAVRCIDDL----------KNFTI 575 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655 L+++P +G +A I F+ N N+ +E L +E+ E+ ++ VFT Sbjct: 576 TDLMKLPDIGYKVASEIYNFFHNQENLKMIEEL-RELRVKTCHEEEEKKGKLAGLNFVFT 634 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQF 714 GTL+ R KA+E V LG V +S+K ++VG+ PGSKL+KAQ+LG VKI+NEE+F Sbjct: 635 GTLKCCSREKAKEIVESLGGNVLDTVSKKVHYLVVGEEPGSKLQKAQKLGTVKIINEEEF 694 Query: 715 LFLLQQYNTT 724 L L+ NT Sbjct: 695 LKLIGGENTE 704 >gi|116628243|ref|YP_820862.1| NAD-dependent DNA ligase LigA [Streptococcus thermophilus LMD-9] gi|116101520|gb|ABJ66666.1| NAD-dependent DNA ligase [Streptococcus thermophilus LMD-9] Length = 648 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 218/700 (31%), Positives = 358/700 (51%), Gaps = 55/700 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L +++ + YY P + D+EYD L R + P+L ++ + P +++GG Sbjct: 1 MKELVDKLNQYAKEYYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQA---DSPTHRVGG 57 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + K H P SL+ ++ E+L F RI + + + E KIDG I+ Sbjct: 58 LVLDGFEKYQHEYPLYSLQDAFSREELDAFDKRIK-----SEFPNADYMAELKIDGLSIS 112 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + Y G A RGDG GE+++ ++ I IP L L+ P I VRGE Y+ + +F Sbjct: 113 LTYVDGILQVGATRGDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAEFER 170 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NFFVHGLGKTSEIFAKGQYEML 258 +N + G +ANPRNAA+G LR+L+ + FF G T + Q ++L Sbjct: 171 INTQRQENGEAEFANPRNAAAGTLRQLDTKVVAERRLATFFYQEAGPTERLT---QNDVL 227 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ LGF VN ++ I + + R L YDIDG+V KV+ ++Q++LG Sbjct: 228 NEVAELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDHLAYDIDGVVIKVNSLAMQEELGFT 287 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++PRW I++KF ++ +LL +D Q+GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 288 VKAPRWAIAYKFPAEEKEAKLLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 347 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR+GD V+V +AG++IP V+ ++ ++R PS CP C Sbjct: 348 I-----------TEKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQE-AMPVPSQCPSCG 395 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S ++ + A RC +C AQ E L HF SRDA NI G+G ++ FK+E Sbjct: 396 SGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNISGMGPSVVEKLFKAE 448 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 ++ ADI+ L + + GF + S LY +I + S E+ ++ LG Sbjct: 449 ----LVKEVADIYGLNSQDF------LQLEGFKEKSAEKLYAAIQASKENSAEKLLYGLG 498 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVGA++++ L + + + + A D ++ V +G++IA++I ++ Sbjct: 499 IRHVGAKVSKQLLESFGTIKELASA----------DVQAIAAVDGLGEVIAKSIQRYFAK 548 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 ++ L + + + K +V TG L+ ++R +A+ + LGA V Sbjct: 549 EEAQVLLKELESYGVNLSYLGQKVTDDAILSGKTVVLTGKLEHLKRSEAKAKLEALGAKV 608 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KTD+++ G + GSKLEKAQ LG+++ +E L L Sbjct: 609 TGSVSKKTDLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL 648 >gi|282919739|ref|ZP_06327471.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus C427] gi|282316377|gb|EFB46754.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus C427] Length = 667 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 242/715 (33%), Positives = 375/715 (52%), Gaps = 53/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++ L ++ + YY P + DSEYD L I P+ + Sbjct: 1 MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEFKTV---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N +DLRKF RI ++ + E K Sbjct: 58 PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++Y G FV RGDG +GED++ ++ I IP + + +EVRGE Y+ Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKDPLN--VEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + FL LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L ++ LGF N + + G++ Y + S R +LPYDIDG+V KV++ Q Sbjct: 231 SQSEALDELDKLGFTTNKNRARVSDIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++G +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V+VK+AG++IP+VV I R DA + P+ Sbjct: 351 LHNEDLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++SE I+ ADIF L + G V NL +I + ++ SLE Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLEN 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + L+ + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668 V + +N ++ L + I + K E K +V TG L ++ R++A + Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 ++ GA V++ +++ TD++IVG++ GSKL KAQ LG++I E+QF+ + N+ Sbjct: 613 WLASQGAKVTSSVTKNTDVVIVGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667 >gi|253729682|ref|ZP_04863847.1| DNA ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726568|gb|EES95297.1| DNA ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 667 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 242/715 (33%), Positives = 375/715 (52%), Gaps = 53/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++ L ++ + YY P + DSEYD L I P+ + Sbjct: 1 MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N +DLRKF RI ++ + E K Sbjct: 58 PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++Y G FV RGDG +GED++ ++ I IP + + +EVRGE Y+ Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLN--VEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + FL LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L ++ LGF N + N G++ Y + S R +LPYDIDG+V KV++ Q Sbjct: 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++G +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V+VK+AG++IP+VV I R DA + P+ Sbjct: 351 LHNEDLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++SE I+ ADIF L + G V NL +I + ++ SLE Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLEN 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G ++++ LA+ Y + L+ + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKVSQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668 V + +N ++ L + I + K E K +V TG L ++ R++A + Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 ++ GA V++ +++ TD++I G++ GSKL KAQ LG++I E+QF+ + N+ Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667 >gi|86608809|ref|YP_477571.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-2-3B'a(2-13)] gi|123724461|sp|Q2JLU3|DNLJ_SYNJB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|86557351|gb|ABD02308.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-2-3B'a(2-13)] Length = 686 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 229/705 (32%), Positives = 368/705 (52%), Gaps = 56/705 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + L + YY + PI+ DS YD L R + A+P+L P+ P Sbjct: 4 KLEERARELRTLLQKASIAYYVHDAPILEDSVYDRLYRELQELERAYPELV---TPDSPT 60 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD------DNSIFFT 129 ++G + V H IP SLE +N E+L ++ R+ R + + + + Sbjct: 61 QRVGEKPAEHFPTVFHRIPLYSLENAFNPEELEEWQERLLRVLGRAPVPDSRTEGELEYV 120 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVR 188 E KIDG + + Y +G A RGDG +GED++ +RAI +IP + + P ++EVR Sbjct: 121 CELKIDGAALALTYIEGLLERGATRGDGQAGEDITPNVRAIRSIPLRLATADPPPVLEVR 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL---- 243 GEVY++ +F +N E + G P+ANPRN A+G LR+L+ R L+FF + L Sbjct: 181 GEVYLALAEFERINQERRSAGDPPFANPRNCAAGTLRQLDSRVVAARKLSFFAYALHWPE 240 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G + + Q++ LQ+++ LGFPVN + ++ +Y + + PY DG+V Sbjct: 241 GWPAGDPPQTQWQCLQQLKELGFPVNPLSQVCRGLGEVIQFYERWRGAQL--PYASDGVV 298 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 K++ LQ++ G + PRW I+ K+ ++ TR+ I +GRTG +TPVA LEPV + Sbjct: 299 VKLNSLRLQEEAGFTQKFPRWAIALKYPAQEVPTRIRAIVASVGRTGAVTPVAELEPVPL 358 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G L++ A+LHN D ++ L D+ +GD +V++AGE+IP+VV I+ R Sbjct: 359 AGTLVSRASLHNADRLREL-----------DVHIGDTAIVRKAGEIIPEVVGILKELRPA 407 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 DA P+S PS CP C + +VR A RC C A+ +L+H+ SRDA +I Sbjct: 408 DAVPYSLPSQCPECHTPLVRPPGE------AVTRCPNP-ECPAKLRGQLQHWASRDALDI 460 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGLG+++ +S +R AD++ L Q + G G S L +I Sbjct: 461 EGLGEKRAAQLVES----LGVRTVADLYRLTPEQLQG------LEGMGSRSSQKLVQAIQ 510 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + R ER ++ LGI HVG A+ LA ++ + + AQ ++ ++ Sbjct: 511 RSRQQPWERVLYGLGIPHVGVVTAQILAGHFPTPELLAQA----------SAETIAQIYG 560 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQ 662 +G +A+A+V ++ P + ++ L P++ + E VS + KK V TGTL + Sbjct: 561 IGAEVAEAVVAWFAEPAHRRLLQELQALGIPALPQQENPAVSQILAGKKFVITGTLPTLS 620 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 R +A+ ++ G V+A +SR+TD ++VG +PGSKLE+AQQLG+ Sbjct: 621 RQQAKAWIESRGGKVTASVSRQTDYVVVGSDPGSKLEQAQQLGIP 665 >gi|312278868|gb|ADQ63525.1| DNA ligase [Streptococcus thermophilus ND03] Length = 648 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 218/700 (31%), Positives = 358/700 (51%), Gaps = 55/700 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L +++ + YY P + D+EYD L R + P+L ++ + P +++GG Sbjct: 1 MKELVDKLNQYAKEYYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQA---DSPTHRVGG 57 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + K H P SL+ ++ E+L F RI + + + E KIDG I+ Sbjct: 58 LVLDGFEKYQHEYPLYSLQDAFSREELDAFDKRIK-----SEFPNADYMAELKIDGLSIS 112 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + Y G A RGDG GE+++ ++ I IP L L+ P I VRGE Y+ + +F Sbjct: 113 LTYVDGILQVGATRGDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAEFER 170 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NFFVHGLGKTSEIFAKGQYEML 258 +N + G +ANPRNAA+G LR+L+ + FF G T + Q ++L Sbjct: 171 INTQRQENGEAEFANPRNAAAGTLRQLDTKVVAERRLATFFYQEAGPTERLT---QNDVL 227 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ LGF VN ++ I + + R L YDIDG+V KV+ ++Q++LG Sbjct: 228 NEVAELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDHLAYDIDGVVIKVNSLAMQEELGFT 287 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++PRW I++KF ++ +LL +D Q+GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 288 VKAPRWAIAYKFPAEEKEAKLLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 347 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR+GD V+V +AG++IP V+ ++ ++R PS CP C Sbjct: 348 I-----------TEKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQE-AMPVPSQCPSCG 395 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S ++ + A RC +C AQ E L HF SRDA NI G+G ++ FK+E Sbjct: 396 SGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNISGMGPSVVEKLFKAE 448 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 ++ ADI+ L + + GF + S LY +I + S E+ ++ LG Sbjct: 449 ----LVKEVADIYGLNSQDF------LQLEGFKEKSAEKLYAAIQASKENSAEKLLYGLG 498 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVGA++++ L + + + + A D ++ V +G++IA++I ++ Sbjct: 499 IRHVGAKVSKQLLESFGTIKELASA----------DVQAIAAVDGLGEVIAKSIQRYFAK 548 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 ++ L + + + K +V TG L+ ++R +A+ + LGA V Sbjct: 549 EEAQVLLKELESYGVNLSYLGQKVADDAILSGKTVVLTGKLEHLKRSEAKAKLEALGAKV 608 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KTD+++ G + GSKLEKAQ LG+++ +E L L Sbjct: 609 TGSVSKKTDLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL 648 >gi|323341293|ref|ZP_08081538.1| NAD-dependent DNA ligase LigA [Lactobacillus ruminis ATCC 25644] gi|323091287|gb|EFZ33914.1| NAD-dependent DNA ligase LigA [Lactobacillus ruminis ATCC 25644] Length = 671 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 227/718 (31%), Positives = 386/718 (53%), Gaps = 55/718 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E+A+KEL SL ++++ YY P + D YD +R + FP+L Sbjct: 1 MDKEEAKKELESLREKLTKWSREYYVLDAPTVEDHVYDENYKRLLELEAKFPELV---TK 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ + KV H IP LSL +++ E+L F+ R + + E Sbjct: 58 DSPSQRVGGKILTNFTKVEHEIPMLSLGDVFSKEELADFVKR----LNENAGADFGYNCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++ YE G FV + RG+G GED++ ++ I +P L+ I +EVRGE Sbjct: 114 LKIDGLAISLTYEDGIFVKGSTRGNGTIGEDITENLKTINAVPLKLNEKIS--VEVRGEC 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN + A G+ +ANPRNAA+G LR+L+ R L+ F++ L + + Sbjct: 172 YMPKKSFVDLNKKREAEGQPVFANPRNAAAGSLRQLDSKITAERNLSIFIYYLMEPEKFG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K Q E L+KM GF VN R +T I +Y +E ++ R+ L YDIDG+V K + F+ Sbjct: 232 VKTQSEALKKMASWGFRVNGESRVCSTMDEIDAYLDEYQAKRAGLEYDIDGIVLKAEPFT 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 + + +G + PRW I++KF + T + DI+ +GRTG++TP A ++PV + G ++ Sbjct: 292 VHELVGNTVKVPRWAIAYKFPPDEQETIVRDIEWTVGRTGVVTPTAVMDPVLLAGTTVSR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN DY+ + IR+ D V + +AG++IP++ ++++ +R D++P+ Sbjct: 352 ASLHNPDYL-----------NEKGIRLLDTVKLHKAGDIIPEISEVVLEKRPEDSKPYEI 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C +++V + AA RC C A E L HF S++A NI+GLG + Sbjct: 401 PTNCPECDAKLVHLDDE------AALRCINPK-CKALMKESLTHFASKNAMNIDGLGPKI 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F+ I +D++ + + + F + S +NL ++I+ R SL Sbjct: 454 IEQLFER----GMINDVSDLYK------LTFDDLLLLDKFKEKSASNLLNAIDASRKNSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ A+ LA+ +++ A+ ++ + +G+ IA Sbjct: 504 ERLLFGLGIRHVGAKAAKLLAERFMTMDALAKASK----------EEIVAIETMGETIAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPS-------IGRHEKNVSSEIENKKLVFTGTLQKIQR 663 ++ ++ + +E L E S +V TGTL++++R Sbjct: 554 SLSTYFNSEGANELLEELKSVGVNMSYLGKTAAELEEAASGSAFNGLTVVLTGTLERLKR 613 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 A++++ + GA V+ +++KT+++I G + GSKL KA++LG KIMNEE+FL +++ Sbjct: 614 SDAKKWLEEHGAKVTGSVTKKTNLLICGHDAGSKLTKAKELGTKIMNEEEFLQKMEEK 671 >gi|282917251|ref|ZP_06325006.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus D139] gi|283771054|ref|ZP_06343945.1| DNA ligase [Staphylococcus aureus subsp. aureus H19] gi|282318878|gb|EFB49233.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus D139] gi|283459648|gb|EFC06739.1| DNA ligase [Staphylococcus aureus subsp. aureus H19] Length = 667 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 241/715 (33%), Positives = 375/715 (52%), Gaps = 53/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++ L ++ + YY P + DSEYD L I P+ + Sbjct: 1 MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELINIEEEHPEYKTV---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N +DLRKF RI ++ + E K Sbjct: 58 PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++Y G FV RGDG +GED++ ++ I IP + ++ +EVRGE Y+ Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKESLN--VEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + FL LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L ++ LGF N + N G++ Y + S R +LPYDIDG+V KV++ Q Sbjct: 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++G +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V+VK+AG++IP+VV I R DA + P+ Sbjct: 351 LHNEDLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 +++E I+ ADIF L + G V NL +I + ++ SLE Sbjct: 453 QLYQNE----LIKDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLEN 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + L+ + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668 V + +N ++ L + I + K E K +V TG L ++ R++A + Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 ++ GA V++ +++ TD++I G++ GSKL KAQ LG++I E+QF+ + N+ Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667 >gi|82751560|ref|YP_417301.1| DNA ligase [Staphylococcus aureus RF122] gi|123754599|sp|Q2YU70|DNLJ_STAAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|82657091|emb|CAI81528.1| DNA ligase [Staphylococcus aureus RF122] Length = 667 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 241/715 (33%), Positives = 373/715 (52%), Gaps = 53/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++ L ++ + YY P + DSEYD L I P+ + Sbjct: 1 MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N +DLRKF RI ++ + E K Sbjct: 58 PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++Y G FV RGDG +GED++ ++ I IP + + +EVRGE Y+ Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLN--VEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + FL LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L ++ LGF N + N G++ Y + S R +LPYDIDG+V KV++ Q Sbjct: 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++G +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V+VK+AG++IP+VV I R A + P+ Sbjct: 351 LHNEDLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEGAVTYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++SE I+ ADIF L + G V NL +I + ++ SLE Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLEN 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + L+ + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668 V + +N ++ L + I + K E K +V TG L ++ R++A + Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 ++ GA V++ +++ TD++I G++ GSKL KAQ LG++I E+QF+ + N+ Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667 >gi|282861257|ref|ZP_06270322.1| DNA ligase, NAD-dependent [Streptomyces sp. ACTE] gi|282563915|gb|EFB69452.1| DNA ligase, NAD-dependent [Streptomyces sp. ACTE] Length = 732 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 213/741 (28%), Positives = 351/741 (47%), Gaps = 61/741 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +AR+ + L ++I H YY +P++ D+E+D L R +A+ P L P+ P Sbjct: 15 AEARERHALLSEQIEEHRFRYYVKDQPVVSDAEFDRLMRELEAVEDENPQL---RTPDSP 71 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 K+ G V H LSL+ ++ E+L + R+ + + + F E K+ Sbjct: 72 TQKVAGPYTTEFTSVEHRERMLSLDNAFDDEELAAWAERVAKDVGRPGYH---FLCELKV 128 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193 DG + + YE G+ AA RGDG +GED++ IR I IP L+ + P ++E+RGEVY Sbjct: 129 DGLAVNLTYEHGRLTRAATRGDGRTGEDITPNIRTIAEIPHRLTGDRVPALVEIRGEVYF 188 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 F LN ++ G KP+ANPRNAA+G LR+ +P TR L+ VHG+G + Sbjct: 189 PMEAFEGLNARLVEAGDKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAREGLDID 248 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 + +R G P + ++ G+ + R ++ ++IDG+V K+DE LQ Sbjct: 249 RLSQAYDLLRDWGLPTARHNKVVDSLDGVREFVRYFGENRHSVEHEIDGVVVKLDEIPLQ 308 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++E V + G+ + AT Sbjct: 309 GRLGSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEAVEVAGSEVEFAT 368 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN++ +K + + +GD V++++AG+VIP+++ +V+ R + F P+ Sbjct: 369 LHNQNVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPA 417 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG----- 487 CP C + + + RC +C AQ ER+ + R +I+ G Sbjct: 418 ECPECGTPLRPM-----KEGDVDLRCPNARSCPAQLRERVAYLAGRKCLDIDHFGYVAAA 472 Query: 488 -------------KQQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTSTTK-----IENI 527 + + D F + D IR L RR + + N Sbjct: 473 ALTQPLEPSEPPLRDEGDLFSLTIDQLLPIRAYVLDPDSGLPRRDPKTGEEKIATVFANQ 532 Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587 G + L D I + L R + L IRHVG A LA+ + S + Sbjct: 533 QGEPKKNALALLDGIAAAKQAPLARILTGLSIRHVGPVAAVELARQFRSVDRIDEASEAE 592 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSS 645 +A VG IIA ++ +++ + + + E Sbjct: 593 LAAA----------DGVGSIIAASVKQWFAEDWHREILRKWREAGVRMEDEGAGEDEGPR 642 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 +E +V TGTL R A++ + LGA V+ +S+KT ++VG+NPGSK +KA QL Sbjct: 643 PLEGLTVVVTGTLASHTRDGAKDALQSLGAKVTGSVSKKTSFVVVGENPGSKYDKAMQLK 702 Query: 706 VKIMNEEQFLFLLQQYNTTLR 726 V +++E F LL + R Sbjct: 703 VPVLDEAGFAVLLDEGPDAAR 723 >gi|283471175|emb|CAQ50386.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus ST398] Length = 667 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 242/715 (33%), Positives = 375/715 (52%), Gaps = 53/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++ L ++ + YY P + DSEYD L I P+ + Sbjct: 1 MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N +DLRKF RI ++ + E K Sbjct: 58 PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++Y G FV RGDG +GED++ ++ I IP + + +EVRGE Y+ Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLN--VEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + FL LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L ++ LGF N + + G++ Y + S R +LPYDIDG+V KV++ Q Sbjct: 231 SQSEALDELDKLGFTTNKNRARVSDIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++G +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V+VK+AG++IP+VV I R DA + P+ Sbjct: 351 LHNEDLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++SE I+ ADIF L + G V NL +I + ++ SLE Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLEN 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + L+ + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668 V + +N ++ L + I + K E K +V TG L ++ R++A + Sbjct: 553 VTYLENEDIRALIQKLKYKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 ++T GA V++ +++ TD++I G++ GSKL KAQ LG++I E+QF+ + N+ Sbjct: 613 WLTSQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667 >gi|167631047|ref|YP_001681546.1| DNA ligase, nad-dependent [Heliobacterium modesticaldum Ice1] gi|254781344|sp|B0TDL0|DNLJ_HELMI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|167593787|gb|ABZ85535.1| DNA ligase, nad-dependent [Heliobacterium modesticaldum Ice1] Length = 675 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 243/719 (33%), Positives = 372/719 (51%), Gaps = 66/719 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 A + ++ L ++I HD CYY P I D+EYD L R + + P+L + + Sbjct: 10 PADAAQRIAELREQIRRHDYCYYVLDAPEISDAEYDRLMRELLDLEQSHPELVTA---DS 66 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG+ + V+H +P LSL + +DLR+F R +++ D + + +EPK Sbjct: 67 PSQRVGGQPLAAFRAVSHRVPLLSLANAVDDQDLREF----DRRARERADRPLTYVVEPK 122 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG + + YE+G+F+ AA RGDG GED++ I+ + +P L + +EVRGE Y+ Sbjct: 123 IDGLTVVLSYEEGRFIRAATRGDGLIGEDITENIKTVRAVPLRL-KRDIKSLEVRGEAYL 181 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-A 251 K F LN+E G +ANPRNAA+G LR+L+P +R L + + + Sbjct: 182 PKAAFARLNEEREEAGEAAFANPRNAAAGSLRQLDPKVTASRPLRAYFYNILHLEGADGV 241 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q E LQ + LG PVN R T ++ Y R LPY+IDG+V KV+E Sbjct: 242 GEQVEALQMLEDLGLPVNPERRYCRTIDDVIDYCRYWTEHRHDLPYEIDGMVVKVNELDQ 301 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 LGE A+SPR+ I+ KF +QA TR+ DI +++GRTG++TP A LEPV + G ++ A Sbjct: 302 YPLLGETAKSPRYAIAFKFPPEQAITRVRDITVKVGRTGVITPTAELEPVRLAGTTVSRA 361 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHNED I+ RDI +GD V++++AG++IP+V+ ++ +R + +PF P Sbjct: 362 TLHNEDIIR-----------ERDIHIGDYVVIQKAGDIIPEVLSVLKEKRTGEERPFFMP 410 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C S V R AA RCT LAC AQ E L HF SRDA NIEGLG + Sbjct: 411 QTCPECHSPVSRLKGE------AAIRCTS-LACPAQAKEGLIHFASRDAMNIEGLGPAVV 463 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + ++ A +R PAD++ L Q + G S NL +I ++ L Sbjct: 464 NLLWE----AGLVRDPADLYDLTAEQV------APLERMGKKSAANLIAAIENSKSRGLA 513 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 IF+LGIR VG A++LA+++ S + L V +G +A++ Sbjct: 514 ALIFALGIRLVGQTAAKTLARHFGSMDQLMKATT----------EELQAVSEIGPKMAES 563 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKI-------- 661 + ++ P N ++ L ++ V K + Sbjct: 564 LQRWFAVPANRQMIDRLAEKGLQMETEKAGDAGVPQTFAGK--------TVVLTGTLTTL 615 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R +AQ + + GA V++ +S+KT ++I G+ GSKLEKA++L + I++E FL L+ + Sbjct: 616 DRREAQRLLEERGAKVASSVSKKTSLVIAGEAAGSKLEKAKELNIPILSEADFLQLIDR 674 >gi|221195651|ref|ZP_03568705.1| DNA ligase, NAD-dependent [Atopobium rimae ATCC 49626] gi|221184417|gb|EEE16810.1| DNA ligase, NAD-dependent [Atopobium rimae ATCC 49626] Length = 706 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 224/730 (30%), Positives = 357/730 (48%), Gaps = 53/730 (7%) Query: 12 LSIEQA--RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 +S + R + L + +++ YY P + D+E+D L I A P+L Sbjct: 1 MSEAEKSFRSRAAELNRILNHAAYAYYALDAPELTDAEFDRLLVELQGIEAAHPELIV-- 58 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P ++GG ++ VTH+ S++ N+E+L ++ R + + +T Sbjct: 59 -PESYTQRVGGYVSEQFEPVTHAARMYSIDDAMNLEELDAWLARTDEALGASKTHPVAYT 117 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---------LSLN 180 E KIDG I + Y +G+ V A RGDG +GE+V+A I IPR Sbjct: 118 CELKIDGLGIALTYTEGQLVRGATRGDGATGENVTANALTIKDIPRALAPAGLARLRDEG 177 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +EVRGEVY+ K+ F+ LN++ A G++P+ANPRNAA+G LR+ +P R L F Sbjct: 178 AHLSLEVRGEVYMPKHSFVRLNEDADAAGKQPFANPRNAAAGSLRQKDPKVTAHRDLETF 237 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 ++ + + + Q++ L +R GF VN + + + + RS L YDI Sbjct: 238 MYAIADEAPLQVDSQWKFLSWLRDCGFSVNTHAARCVSAQEVHDFCKRALEERSELDYDI 297 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KVD F+ Q++LG +R+PRW I+ KF ++ T L +I IQ+GRTG+LTPVA + Sbjct: 298 DGVVVKVDSFAYQEELGFTSRAPRWAIAFKFPPEEKQTVLREIRIQVGRTGVLTPVAEFD 357 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G+ I ATLHN D + +++R GD ++V +AG+VIP+VV ++ Sbjct: 358 PVVVAGSTIARATLHNIDEVHR-----------KNVREGDTIIVHKAGDVIPEVVRPVLE 406 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R +++PF P+ CP C S VV++ + + C AQ ERL H+ SR Sbjct: 407 KRPLNSKPFMMPTVCPSCGSPVVKEEGEVAYR-------CVSIDCPAQATERLIHWGSRK 459 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPA-----DIFTLQRRQQTSTTKIENILGFGD-- 532 A +I+GLG++ ++ + + DI L + T ++ G Sbjct: 460 AMDIDGLGEELVNKLVANGILSDVADFYDKLTVSDIAELPTGRFYETDTDGHLSGDPIPT 519 Query: 533 --VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 + I + + L R +F +GIRHVGA +A LA+Y+ S Q Sbjct: 520 GLTIAEKIMTQIQESKTRGLARVLFGIGIRHVGANMAALLAQYFHSIQELQLATE----- 574 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIEN 649 + + VG +A++I EF+ P NI +E L + + Sbjct: 575 -----EQMAAISGVGPKMAKSIKEFFLIPENIAVLERLRVAGVVMEEADATSDKPQTLSG 629 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 V TGTL+ R +A + + GA VS +S+KT ++ G+ GSKL KA LGV ++ Sbjct: 630 LTFVLTGTLEHYTRDEAGALLKERGAKVSGSVSKKTSFVVAGEAAGSKLTKAVSLGVPVL 689 Query: 710 NEEQFLFLLQ 719 +E +L+ Sbjct: 690 SEADLERILE 699 >gi|258421012|ref|ZP_05683943.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9719] gi|257842960|gb|EEV67378.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9719] Length = 667 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 242/715 (33%), Positives = 374/715 (52%), Gaps = 53/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++ L ++ + YY P + DSEYD L I P+ + Sbjct: 1 MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N +DLRKF RI ++ + E K Sbjct: 58 PTVRVGGEAQASFKKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVGYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++Y G FV RGDG +GED++ ++ I IP + + +EVRGE Y+ Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLN--VEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + FL LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L ++ LGF N + N G++ Y + S R +LPYDIDG+V KV++ Q Sbjct: 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++G +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V+VK+AG++IP+VV I R DA + P+ Sbjct: 351 LHNEDLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++SE I+ ADIF L + G V NL +I + ++ SLE Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLEN 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + L+ + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668 V + +N ++ L + I + K E K +V TG L ++ R++A + Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 ++ GA V++ +++ TD++I G++ GSKL KAQ LG++I E+QF+ + N+ Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667 >gi|319902123|ref|YP_004161851.1| DNA ligase, NAD-dependent [Bacteroides helcogenes P 36-108] gi|319417154|gb|ADV44265.1| DNA ligase, NAD-dependent [Bacteroides helcogenes P 36-108] Length = 665 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 221/706 (31%), Positives = 361/706 (51%), Gaps = 48/706 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A++++ L ++ H+ YY + P I D E+D++ R + +P+ +D + P Sbjct: 3 AKEKIDQLRADLHRHNYNYYVLNAPEISDKEFDSMMRDLQNLEKEYPEY---QDNSSPTM 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G ++N + +V H P LSL ++ ++ F R+ + + E K DG Sbjct: 60 RVGSDLNKNFTQVMHKYPMLSLGNTYSENEVTDFYDRVKQSL----NEDFEICCELKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 T I++ YE GK V A RGDG G+DV+ ++ I TIP +L N P++ E+RGE+ + Sbjct: 116 TSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLLLHGNYPKLFEIRGEILMPWK 175 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 F ALN+E A +ANPRNAASG L+ N + E+ G YE Sbjct: 176 SFEALNNEREAREETLFANPRNAASGTLKLQNSAVVASRKLDAYLYYLLGEELPCNGHYE 235 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 LQ GF ++ +++ ++ I Y + + R L DG+V KV+ QK LG Sbjct: 236 NLQMAASWGFKISEHMKKVHSLEEIFEYISFWDTERKNLSVATDGIVLKVNSLKQQKNLG 295 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 FTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGTITPVANLDPVQLSGTVVKRASLHNA 355 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCP 435 D I+GL D+ +GD V V++ GE+IPK+ + R + F + CP Sbjct: 356 DIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVNKEARGMLLGEKVKFITHCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C SR++R AAH C AC Q +++HF+ R A +I+GLG + +D F+ Sbjct: 405 ECGSRLIRYEGE------AAHYCPNETACPPQIKGKIEHFICRKAMDIDGLGPETVDTFY 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + I+ AD++ L+ + G+ S N+ + I + + ER +F Sbjct: 459 R----LGLIKDAADLYNLKADDIKG------LDRMGEKSAENIINGITASKEVPFERVLF 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG +A+ +AK ++ + A + LI + +G+ IA++IV + Sbjct: 509 ALGIRFVGETVAKRIAKSFIDIEELANA----------NLEVLINIDEIGEKIAKSIVTY 558 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + NP N VE L + E + + + +V +G R + + + + Sbjct: 559 FCNPSNRKLVERLKDAGLQLFQKEEDLNEYTDRLAGQSIVISGVFTHHSRDEYKILIEKN 618 Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G + +S KT+ I+ G+N G +KLEKA++LG+KIMNE++FL L+ Sbjct: 619 GGKNTGSISAKTNFILAGENMGPAKLEKARKLGIKIMNEDEFLALI 664 >gi|241889713|ref|ZP_04777011.1| DNA ligase, NAD-dependent [Gemella haemolysans ATCC 10379] gi|241863335|gb|EER67719.1| DNA ligase, NAD-dependent [Gemella haemolysans ATCC 10379] Length = 663 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 230/708 (32%), Positives = 370/708 (52%), Gaps = 48/708 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++Q ++E+ L ++ + YY P I D+EYD L ++ + + +P+L N Sbjct: 1 MKQIQEEILKLVSLLNKYSYEYYVEDNPQITDTEYDTLYKQLEKLEEKYPELILE---NS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + K+TH IP LSL ++ EDL F R+ + ++ + E K Sbjct: 58 PTQRVGDRVLDEFEKITHKIPMLSLSNTFSTEDLIDFDARVSKLV---PSENVEYICELK 114 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I+I Y+ GK V AA RGDG GEDV+ I+ I +IP+VL EVRGEVY+ Sbjct: 115 IDGLAISINYDNGKLVSAATRGDGTVGEDVTENIKTIFSIPKVLKDKRS--FEVRGEVYL 172 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 K F LN E +ANPRNAA+G LR+L+ + Sbjct: 173 PKKSFNILNKEREENNEVLFANPRNAAAGSLRQLDSKIT-AKRRLSAFIYSIVGDDSIVS 231 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q L + PVN + + ++ Y N + LPYDIDG+V KV+ + +Q+ Sbjct: 232 QENALNTAKEYELPVNPNFKLCKSIDEVIDYINYWTEHKQDLPYDIDGIVIKVNSYKVQE 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 Q+G +SPRW ++KF E++ +T+LLD+++ +GRTGI+TPVA L+P+ I G+ ++ A+L Sbjct: 292 QIGFTQKSPRWATAYKFPEEELATKLLDVELSVGRTGIITPVAILDPIVISGSTVSKASL 351 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN+D I LD V+VK+AGE+IPKVV ++ R + + PS Sbjct: 352 HNKDIIDDLDIHIGD-----------MVVVKKAGEIIPKVVRVVKELRTEGSTKYQMPSN 400 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C N + C Q + ++ HF SRDA NIEGLG + + Sbjct: 401 CPSCHQETYVKDNDPFTR-------CKNPDCPDQNIRKIIHFASRDALNIEGLGDKVVAT 453 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + I D+++L R + + + G+ SV NL ++I K + SL++ Sbjct: 454 LYDK----GIICHTIDLYSLDRDKLIA------LERMGEKSVDNLLNAIEKSKESSLDKV 503 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I++LGI +VG + + LA+ Y++ NF LI + VG I A++I+ Sbjct: 504 IYALGILNVGKKAGKILAEKYVNLSNFMNAT----------LEELINLDDVGQITAESIL 553 Query: 614 EFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 ++ + NI + L+ +P +E ++ K +V TG L ++ R++A+E++ + Sbjct: 554 DYLSDDNNIKFINDLINIGMNPQYEINEIKSNNIFSGKTVVLTGKLVELTRNEAKEFLEK 613 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 GA V+ ++ KTD++I G+ GSKL KA+QLG++++NEEQF ++++ Sbjct: 614 NGAKVTGSVTSKTDLVIAGEKAGSKLTKAEQLGIEVINEEQFANMVRE 661 >gi|300813135|ref|ZP_07093512.1| DNA ligase (NAD(+)) [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300495889|gb|EFK31034.1| DNA ligase (NAD(+)) [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 671 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 209/714 (29%), Positives = 358/714 (50%), Gaps = 49/714 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S+E+A++E+ L ++ YY+ P++ D YD R + A+P+L + Sbjct: 4 SLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDKKYARLLELEAAYPELK---SAD 60 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 ++GGE+N L KV H +P LS+ +++ E+L +F R+ + + + + +E Sbjct: 61 SITQRVGGEVNSDLPKVEHPVPMLSMGDVFSKEELAEFDQRVQKAIG----HPVAYNVEL 116 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG +++ YE+G+ A+ RG+G GEDV+ ++ I +P+ L I EVRGE Y Sbjct: 117 KIDGLSLSLEYEEGRLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGECY 174 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 +SK F LN E G +ANPRNAA+G LR+L+P + Sbjct: 175 MSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPPAGID 234 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q++ + +M LGF N R+ + Y +E R +LPY IDG+V KVD+ +LQ Sbjct: 235 SQHQAIGEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDDLALQ 294 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 LG + PRW I++KF ++ T + +I+ +GRTG++TP A ++PV + G + A+ Sbjct: 295 ADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVQLAGTTVARAS 354 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D + L DIR+GD V + +AG++IP++ ++++++R D+ P+ P+ Sbjct: 355 LHNPDLLAKL-----------DIRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPYEVPT 403 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +V A RC +C AQ E + HF SR A NI GLG + + Sbjct: 404 KCPSCGEDLVHLDKE------VALRCINP-SCPAQVEEGITHFASRQAMNIAGLGPKIVK 456 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + + AD++ L + + F + S+ NL +I++ R S+E Sbjct: 457 QLIAKD----LVHNVADLYYLTADDLS------QLDHFKEKSINNLLAAIDQSRKNSVEL 506 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGI +VG + A+ +A+ + + A L + +G IA+++ Sbjct: 507 VLFGLGIDNVGGKAAQLIARKFKNMSKIASA----------SVQELTAIDTIGMTIAESL 556 Query: 613 VEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++Q + L + G + + + K +V TG L R + + + Sbjct: 557 TAYFQQEEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAEFTKKL 616 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 LGA V+ +S+KTD ++ G++ GSKL KA+ L + + E + + +++ +T Sbjct: 617 QALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDTE 670 >gi|161507068|ref|YP_001577022.1| DNA ligase [Lactobacillus helveticus DPC 4571] gi|190359262|sp|A8YTZ3|DNLJ_LACH4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|160348057|gb|ABX26731.1| DNA ligase [Lactobacillus helveticus DPC 4571] Length = 668 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 214/715 (29%), Positives = 367/715 (51%), Gaps = 51/715 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + +++++A+KE +SL ++ D YY P + D+ YD R + AFP++ Sbjct: 1 MAKITLDEAKKEAASLRTKLDEWADAYYSKDAPEVEDNVYDQSYNRLLELEKAFPEIV-- 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ ++GGE++ KV H IP LS+ +++ ++L++F R+ + + + + Sbjct: 59 -TPDSITQRVGGEIDSDFTKVNHPIPMLSMGDVFSKDELKEFDQRMQKLVG----HPVEY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ Y+ GK V A+ RG+G+ GEDV+A R I IP+VL + IEVR Sbjct: 114 NVELKIDGLSLSLEYQDGKLVRASTRGNGYIGEDVTANARYIADIPQVLPEPL--TIEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+ K F LN E G +ANPRNAA+G LR+L+P + Sbjct: 172 GECYMGKEAFAKLNQEREDEGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ +++M LGF N R+ + + +E + R++L Y IDG+V KVD+ Sbjct: 232 REITSQHQAIERMHELGFHTNETGRKLANLDEVFDFIDEYTAKRNSLTYGIDGIVLKVDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 SL++QLG + PRW I++KF ++ T + DI +GRTG++TP A ++PV + G + Sbjct: 292 LSLEQQLGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTTV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A+LHN DY+ + +R+GD V + +AG++IP++ ++++++R D+ P+ Sbjct: 352 ARASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVLSKRPADSVPY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C ++V + A RC +C AQ E + HF SR A NI GLG Sbjct: 401 EIPTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGIIHFASRPAMNIAGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + + AD++ L + F + S+ NL +I+ + Sbjct: 454 KIVKQLIAKD----LVHNVADLYHLTEDDL------AQLDHFKEKSINNLLTAIDNSKKN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E I LGI HVGA+ AR +A+ + + + + + +G Sbjct: 504 SVELLITGLGIDHVGAKAARLIAQKFKNLEKIMSL----------GVQDIASIDTIGMTT 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI----GRHEKNVSSEIENKKLVFTGTLQKIQRH 664 A+++ ++ P +E L + E+ + ++K +V TG L+ R Sbjct: 554 AESMTTYFAQPEAQKLIEELRESGLNMDYLGADEPEEAPDNPFKDKTVVLTGKLEHYTRS 613 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + + LGA V+ +S KTD +I G + GSK KA+QLGV ++ EE+ + ++ Sbjct: 614 EFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYNKAEQLGVPLLTEEEAIAQIE 668 >gi|291296053|ref|YP_003507451.1| DNA ligase NAD-dependent [Meiothermus ruber DSM 1279] gi|290471012|gb|ADD28431.1| DNA ligase, NAD-dependent [Meiothermus ruber DSM 1279] Length = 666 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 228/710 (32%), Positives = 359/710 (50%), Gaps = 52/710 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++ + L + I YH+ YY KP I D+EYD L + A+ A P+L P+ Sbjct: 1 MQTPKQRIMELRELIRYHNYRYYVLDKPEISDAEYDRLLQELRALEEAHPELII---PDS 57 Query: 74 PLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +G + + V H SL ++ +D+ F I RF +++ + LE Sbjct: 58 PTQTVGSAILETPFTPVPHPTRMYSLGNAFSQDDIADFEASINRFLGREESR--EYVLEY 115 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG + + YE+G F RGDG +GEDV+ + AIP IP L P +EVRGE+Y Sbjct: 116 KIDGLSVNLIYEEGVFRQGLTRGDGLTGEDVTPNLLAIPDIP--RQLPQPLDLEVRGEIY 173 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251 + FL LN ++ G P+ NPRNAA+G LR+ +P +R L +G+G+ + Sbjct: 174 LPIQTFLELNTQLEEAGEPPFKNPRNAAAGSLRQKDPRISASRGLRGLFYGVGRPESLGV 233 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q E+L+K+ LGF V+ + GI Y M + R +LP++ DG+ K++ SL Sbjct: 234 GTQQELLEKLGQLGFSVDPHYQVVRGVEGIEQGYQAMLAARKSLPFEADGVTVKLNNLSL 293 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +LG A++PR+ I++KF ++ +TR+L + Q+GRTG +TPVA LEPV + G+ ++ Sbjct: 294 WSELGYTAKTPRFAIAYKFPAEEKTTRVLRVIFQVGRTGRVTPVAELEPVFLDGSTVSRV 353 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHNE Y++ L +R+GD VLV ++G VIP+V+ ++ A P +P Sbjct: 354 TLHNESYVQEL-----------GLRIGDTVLVHKSGGVIPEVLRVVTEAPRGHA-PVEWP 401 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C + + H C L C A+ E ++HF SR A +I+GLG++ + Sbjct: 402 THCPECGTAL--------ELSGKIHLCPNPL-CPAKAFEAIRHFASRRAMDIQGLGEKLI 452 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + ++ +R AD++ L++ + + + S NL + I ++ LE Sbjct: 453 EQLLET----GLVRDAADLYNLKKEDIAA------LERKAEKSAQNLIEQIEASKSRGLE 502 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R +F+LGI VG AR+LAK + + + L VP + + AQA Sbjct: 503 RLLFALGIPQVGESTARALAKRFGHLDSILKAT----------VEELDAVPDIAETTAQA 552 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 I + P +E L EK S +E V TG L + R + + Sbjct: 553 IHQALARPEMQSFIERLRAAGLVF-EAREKQQSQALEGLTFVLTGELSR-PREEVARQLE 610 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 GA +S +SRKT +I G GSKL KA++LG+ I++E LL+Q Sbjct: 611 AHGAKISGSVSRKTSYVIAGPGAGSKLSKAKELGIPILDEAGLRALLEQK 660 >gi|257436941|ref|ZP_05612983.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus M876] gi|282914702|ref|ZP_06322487.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus M899] gi|257283730|gb|EEV13855.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus M876] gi|282321416|gb|EFB51742.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus M899] Length = 667 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 240/715 (33%), Positives = 373/715 (52%), Gaps = 53/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++ L ++ + YY P + DSEYD L I P+ + Sbjct: 1 MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEFKTV---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N +D RKF RI ++ + E K Sbjct: 58 PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDFRKFDQRIREQIG-----NVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++Y G FV RGDG +GED++ ++ I IP + + +EVRGE Y+ Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLN--VEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + FL LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L ++ LGF N + + G++ Y + S R +LPYDIDG+V KV++ Q Sbjct: 231 SQSEALDELDKLGFTTNKNRARVSDIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++G +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V+VK+AG++IP+VV I R DA + P+ Sbjct: 351 LHNEDLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++SE I+ ADIF L + G V NL +I + ++ SLE Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLEN 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + L+ + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668 V + +N ++ L + I + K E K +V TG L ++ R++A + Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 ++ GA V++ +++ TD++I G++ GSKL KAQ LG++I E+QF+ + N+ Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667 >gi|90408119|ref|ZP_01216289.1| DNA ligase [Psychromonas sp. CNPT3] gi|90310805|gb|EAS38920.1| DNA ligase [Psychromonas sp. CNPT3] Length = 667 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 249/709 (35%), Positives = 385/709 (54%), Gaps = 48/709 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++ L +++ ++ YY +P I D++YDA+ ++ AI P L N P Sbjct: 3 IALQVKKLTEQLEEYNYQYYVLDEPSISDAQYDAVFQQLKAIESEHPHLLHE---NSPTQ 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 K+GG+ +V H +P LSL+ ++N E L+ FI R K + F +EPK+DG Sbjct: 60 KVGGQALSKFEQVAHEMPMLSLDNMFNDEALQAFIQR----ASDKSIKEVAFCIEPKLDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISK 195 ++I YE G V AA RGDGH+GE+V+A ++ I IP L + P+ +EVRGEV++ + Sbjct: 116 LAVSIIYEHGLLVQAATRGDGHTGENVTANVKTISNIPLRLRGDNIPQRLEVRGEVFMPQ 175 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAKGQ 254 F LN + A+G K + NPRNAA+G LR+L+ F+ + +G Q Sbjct: 176 LGFDKLNARLEALGEKSFVNPRNAAAGSLRQLDSKIAASRPLAFYCYAVGVFDGDLENSQ 235 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 Y +Q+++ G PV++ + + ++YY + + R +L Y IDG+VYKVD+ LQ + Sbjct: 236 YARMQQLKGWGLPVSSEISRVQGLDACLAYYRNIVTQRESLGYAIDGVVYKVDDIDLQDK 295 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG AR+PRW ++KFA ++A TR+ +++ Q+GRTG +TPVA+L PV +GG ++NATLH Sbjct: 296 LGFVARAPRWASAYKFAAEEAITRVENVEFQVGRTGAITPVAKLRPVFVGGVTVSNATLH 355 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-PDAQPFSFPSF 433 N+D I L I +GD V+V+RAG+VIP+V +++ R Q FPS Sbjct: 356 NQDEIARL-----------GILIGDDVVVRRAGDVIPQVARVLLENRDLSQTQEIHFPSV 404 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S + R + A RCTGGL C+AQ+ E +KHF SR A +I+GLG + + Sbjct: 405 CPVCSSALERIVGE------ATIRCTGGLYCAAQRKEAIKHFASRKALDIDGLGNKLVAL 458 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + I+ PA +F L Q ++ + G VS + +S+ + +L RF Sbjct: 459 LVDHD----LIKDPAQLFDLTLAQIST------LPRMGSVSAKKVLNSLQVSKKTTLSRF 508 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +++LGIR VG A +LA +Y + +L V VGDI+A+ I Sbjct: 509 LYALGIREVGEATANNLAMHYKNLSALQDA----------GIEALKEVADVGDIVAKNIY 558 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F++ P N+ V LL+ ++ + + + V TG+ I R + + Sbjct: 559 YFFRQPSNLQVVNRLLEAGVHWPDIQAVESTTQTLVGQTFVITGSFANISRSDIKSELQA 618 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 LGA VS +S+KT+ +I G GSKLEKAQ L + IM+E+Q LL + Sbjct: 619 LGAKVSGSVSKKTNTLIAGTAAGSKLEKAQALDINIMDEQQLFTLLNKQ 667 >gi|326804258|ref|YP_004322076.1| DNA ligase (NAD+) [Aerococcus urinae ACS-120-V-Col10a] gi|326651204|gb|AEA01387.1| DNA ligase (NAD+) [Aerococcus urinae ACS-120-V-Col10a] Length = 677 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 224/714 (31%), Positives = 377/714 (52%), Gaps = 53/714 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + + ++ +++L +++ + YY +P + D YD R+ + + + PDL +S + Sbjct: 10 NQQAVQERMAALVDQLNQYAHEYYVLDQPSVSDDHYDKTYRQLEELEASHPDLIQS---D 66 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++G +N KV P LSL +++ E+L ++ + + + F E Sbjct: 67 SPTQRVGDVLNEKFDKVHFDQPMLSLGDVFSQEELMAWVGGVQKEFG----QDTEFVCEM 122 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG +++ Y+ G+ V A RGDG++GE+++ I+ I +IP L + +EVRGE+Y Sbjct: 123 KIDGLSVSLLYQDGRLVRGATRGDGNTGENITNNIKTISSIPLRLQEPLS--VEVRGEIY 180 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + K F LN++ A G +ANPRN+A+G +R+L+P R LN F++ ++ Sbjct: 181 MPKASFAQLNEDREAAGLATFANPRNSAAGSVRQLDPKVTAKRNLNVFLYTGVLPADAGI 240 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q E+L G VN + ++ I Y ++ IR L YDIDG+V KV++F Sbjct: 241 NSQAELLTSYPQWGLRVNPEFKLTHSKEEIWDYVEKVSQIRHDLAYDIDGIVIKVNDFDQ 300 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG ++PRW I++KF +QA T + DI+ +GRTG++TP A ++PV + G+ + A Sbjct: 301 QEELGYTVKAPRWAIAYKFPAEQAKTTIRDIEWTVGRTGVVTPTAVMDPVLVAGSTVQRA 360 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHN D I+ +DIR+ D+V++ +AG++IP+VV +I ER D+Q + P Sbjct: 361 SLHNMDLIR-----------AKDIRLNDKVIIHKAGDIIPEVVSVITEERDADSQAYPEP 409 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CPICQS +V + A RC AC AQ E+L HFVSR+A +I G+G + Sbjct: 410 QTCPICQSDLVHLEDE------VALRCVNP-ACPAQAKEKLFHFVSRNAMDITGVGPAVI 462 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + ++ P+D++ L + + + S N+ +I++ R SLE Sbjct: 463 TQLYDKA----YVKDPSDLYQLDEATLLT------LDKVKEKSAQNILQAIDQSRENSLE 512 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R +F LGIRHVG + AR +A + S + D ++ + +G+IIA + Sbjct: 513 RLLFGLGIRHVGVKAARDIAMTFGSMEAIQTA----------DREAISAIDGIGEIIADS 562 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 +VE++ N I V L + + +V S + K +V TG L R +A Sbjct: 563 VVEYFANDEVIALVNRLSERGVNMTYLGSSPQAIASVDSFWQGKTVVLTGKLNHYSRQEA 622 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + G V+ +S+ TD+++ G++ GSKL KAQ L + I +EE+ L L+ Sbjct: 623 KSLIEGQGGKVTGSVSKNTDVVVAGEDAGSKLTKAQDLDILIFDEEEMLSHLED 676 >gi|145220287|ref|YP_001130996.1| DNA ligase, NAD-dependent [Prosthecochloris vibrioformis DSM 265] gi|190359271|sp|A4SG85|DNLJ_PROVI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145206451|gb|ABP37494.1| DNA ligase, NAD-dependent [Chlorobium phaeovibrioides DSM 265] Length = 674 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 219/713 (30%), Positives = 349/713 (48%), Gaps = 50/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 I+ R E L +I H+ YY +KP + D ++D L R + P+L P+ Sbjct: 4 IDALRSEAERLRSDIERHNHLYYVEAKPELSDYDFDLLLDRLVQLEREHPELV---TPDS 60 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + V H P LSL ++I ++ +F+ R+ R + + E K Sbjct: 61 PTQRVGGTITKEFPSVEHREPMLSLANTYSIGEVEEFVGRLNRLLEAEGAQGRDTVAELK 120 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-------IE 186 DG +++ Y G + A RGDG G+D++ ++ +P+IP L +E Sbjct: 121 FDGVAVSLLYRDGLLIRGATRGDGRRGDDITVNLKTVPSIPLRLGEFDGPFSAGEGREVE 180 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246 VRGEV + K DF ALND +ANPRNA +G L+ + ++ R +FV Sbjct: 181 VRGEVLMRKEDFEALNDTRPE--EDRFANPRNATAGTLKLQDSREVARRSLWFVAYYVSG 238 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + L+ + GF N R + I ++ R LPY+ DG+V K+ Sbjct: 239 LHDEDTRHVDRLKLLETAGFSTGNQYRLCHGIEEIEAFMQFWDEGRRALPYETDGVVVKL 298 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ + LG ++SPRW I++K+ +A+T L DI Q+GR G +TPVA LEPV+I G+ Sbjct: 299 NDVRQWRLLGATSKSPRWAIAYKYPASRATTLLRDIVFQVGRLGTITPVAELEPVHIAGS 358 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + +TLHN D ++ L + GDRV+++++GEVIPKV+ +++ ER P Sbjct: 359 TVARSTLHNFDEMRRL-----------GVMPGDRVVIEKSGEVIPKVISVLLEERPPGLS 407 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ CP C + +V+ + C C AQ R+ HF SR+A +IE L Sbjct: 408 AKELPTHCPDCGTPLVQPEGE------VSWYCPNEEGCGAQIRGRVLHFASRNAMDIENL 461 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G+ ++ ++ P D++ L+ + + G+ S NL + K R Sbjct: 462 GESLVEQLVAK----GMVKDPGDLYFLREEELAG------LERMGEKSARNLLQGLLKSR 511 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 S R +F LGIRHVG AR LAK S + + + L VP +G Sbjct: 512 EQSFARLLFGLGIRHVGRATARELAKACSSIEVLKEA----------SFEELSEVPDIGP 561 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHK 665 +IA++I +++ P +E L + P V++ E +VFTG LQ+ R Sbjct: 562 VIARSIRDWFLKPAIPSLIEKLRRAGLPLAAEEPGPLVNTNFEGLTVVFTGGLQRHDRSS 621 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A E V G +V + +S+KT +++ G GSKLEKA++LG++I+ E++F LL Sbjct: 622 AGELVVARGGIVVSTVSKKTGLVVAGKEAGSKLEKARKLGLRIITEDEFDALL 674 >gi|15827911|ref|NP_302174.1| NAD-dependent DNA ligase LigA [Mycobacterium leprae TN] gi|221230388|ref|YP_002503804.1| NAD-dependent DNA ligase LigA [Mycobacterium leprae Br4923] gi|7674013|sp|O33102|DNLJ_MYCLE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781376|sp|B8ZS27|DNLJ_MYCLB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|2414536|emb|CAB16425.1| DNA ligase [Mycobacterium leprae] gi|13093464|emb|CAC30658.1| DNA ligase [Mycobacterium leprae] gi|219933495|emb|CAR71800.1| DNA ligase [Mycobacterium leprae Br4923] Length = 694 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 223/726 (30%), Positives = 346/726 (47%), Gaps = 47/726 (6%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + PI + ++ L +E+ H YY PII D+E+DAL R + Sbjct: 1 MSSPEADPIGP----EVLQQWRKLTEEVREHQFRYYVRDAPIISDAEFDALLDRLTVLEE 56 Query: 61 AFPDLARSEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119 P+L P+ P +GG H SL+ ++ ++L ++TRI Sbjct: 57 QHPELC---TPDSPTQLVGGAGFMTDFVATEHLERMFSLDNAFSGDELNAWVTRIRAEIG 113 Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-- 177 + E KIDG +++ Y G+ A RGDG +GEDV+ R I +P L Sbjct: 114 NDAH----YLCELKIDGVALSLVYRDGRLTRATTRGDGRTGEDVTLNARTIEDVPERLTV 169 Query: 178 --SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITR 234 +PE++EVRGEV+ DF ALN ++ G+ P+ANPRN+A+G LR+ +P R Sbjct: 170 SDIYPLPEVLEVRGEVFFRVVDFQALNTSLVEEGKNPFANPRNSAAGSLRQKDPAVTAHR 229 Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 L HGLG Q++ +R G PV+ N G+ R Sbjct: 230 KLRMICHGLGHIEGFRPATQHQAYLALRDWGLPVSEHTTLVNDIAGVQGCIAYWAEHRHE 289 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 + ++IDG+V K+DE +LQ++LG +R+PRW I++K+ ++A T+LLDI + +GRTG +TP Sbjct: 290 VDHEIDGIVVKIDEVTLQRRLGSTSRAPRWAIAYKYLPEEAQTKLLDIRVNVGRTGRVTP 349 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 A + PV + G+ + ATLHN +K + + +GD V++++AG+VIP+V+ Sbjct: 350 FAFMTPVKVAGSTVGQATLHNPSEVKR-----------KGVLIGDTVVIRKAGDVIPEVL 398 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 +V+ R + F P+ CP C + + + + A RC +C Q ER+ H Sbjct: 399 GPVVDLRDGSEREFVMPTTCPECGTTLAPE-----KEGDADIRCPNARSCPGQLRERVFH 453 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 SR A +I+GLG + A I D+FTL + T N G + Sbjct: 454 VASRSALDIQGLGYEAGVALL----AAQVITSEGDLFTLTEKALLRTELFRNKAGELSAN 509 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 L +++K + L R + +L IRHVG AR+LA + S Sbjct: 510 GKRLLVNVDKAKTAPLWRVLVALSIRHVGPTAARALATEFGSVDAILAA----------S 559 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654 L V VG IA A+ E++ + V + + +V E +V Sbjct: 560 PEQLAAVEGVGTTIAAAVTEWFTVDWHRVIVNKWRAAGVRMVDERDTSVLPTCEGLTIVV 619 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TG+L R A+E + G V+ +S+K ++VGD PG K +KA +LGV I+NE+ F Sbjct: 620 TGSLAGFSRDDAKEAIVARGGKVAGSVSKKIAYVVVGDLPGYKYDKAVELGVPILNEDGF 679 Query: 715 LFLLQQ 720 LL+Q Sbjct: 680 RLLLEQ 685 >gi|255038855|ref|YP_003089476.1| DNA ligase, NAD-dependent [Dyadobacter fermentans DSM 18053] gi|254951611|gb|ACT96311.1| DNA ligase, NAD-dependent [Dyadobacter fermentans DSM 18053] Length = 695 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 217/733 (29%), Positives = 355/733 (48%), Gaps = 66/733 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E + + L +++ Y++D YYQ S I D E+D L + A+ +P + Sbjct: 1 MNPE---QRIQELSEKLHYYNDRYYQDSVSEISDYEFDQLLKELQALESEYPQFRQD--- 54 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + S V H P LSL+ +N ++LR F R+ R D + + E Sbjct: 55 DSPTQRVGGTVTKSFNAVYHRYPMLSLDNTYNEDELRSFDDRVRRGL---DGEAYEYICE 111 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 K DG ++ YE G V RGDG G++++ ++ I ++P RV + IP + E+RGE Sbjct: 112 LKFDGISLSFTYENGVLVRGVTRGDGTRGDEITNNVKTIRSLPLRVKADGIPPVFEIRGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 ++ + F LN+EM +G YANPRNAASG + + + R + F Sbjct: 172 GFMPISSFQKLNEEMETLGENQYANPRNAASGSFKLQDSAEAARRGLDSYIYSFLSDNAF 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K E L ++ GF V+ G ++ +T +++Y +E + R+ LP DG+V K++ F Sbjct: 232 FKSHEESLLALKSWGFNVSPGWKKVSTIDEVIAYIHEWEEKRAHLPLATDGIVIKINSFE 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP---------- 360 Q++LG A+SPRW IS+K+ + L + Q+GRTG +TPVA L Sbjct: 292 QQRELGFTAKSPRWAISYKYKAENKPAVLRMVTYQVGRTGAVTPVANLCDLSERALPYNQ 351 Query: 361 ---VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 V++ G + ATLHN + ++ L +R+ D V V+++GE+IPK+ + Sbjct: 352 VKGVHLSGTRVKRATLHNANELERL-----------GVRLNDTVFVEKSGEIIPKITGVD 400 Query: 418 VNERHPDAQ-PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 V++R P FP+ CP C + R+ A C C Q R++HF+ Sbjct: 401 VSQRENYETEPVIFPTHCPECGHELQRNEGE------VAFFCPNDSHCPPQLKGRIEHFI 454 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG------- 529 R A NIE LG+ +++ F +R PAD++ L + K Sbjct: 455 HRKAMNIESLGEGKIELLFD----LDLVRTPADLYDLNHDKLLGLEKNLLNEETGKLKKI 510 Query: 530 -FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 F + +V N+ I R + + +F+LGIR VG +A LA Y+ S + Sbjct: 511 SFREKTVENILKGIEVSRTVPFKNVLFALGIRFVGQTVAEKLAAYFKSMRALRAAT---- 566 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSE 646 + L VP +G IA +I F+ P N VE L + + + S Sbjct: 567 ------YEQLTAVPEIGGRIALSIESFFSVPENQMLVERLERAGLQMESDEKPVEIESDL 620 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 ++ K V +G + +R + +E + G V + +S K + ++ G N G SKLEKA++LG Sbjct: 621 LDGKTFVISGVFENFERDELKEKIEANGGKVLSGVSGKLNYLLAGANMGPSKLEKARKLG 680 Query: 706 VKIMNEEQFLFLL 718 V I++EE+FL ++ Sbjct: 681 VTIISEEEFLAMI 693 >gi|310657889|ref|YP_003935610.1| DNA ligase [Clostridium sticklandii DSM 519] gi|308824667|emb|CBH20705.1| DNA ligase, NAD(+)-dependent [Clostridium sticklandii] Length = 683 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 225/712 (31%), Positives = 367/712 (51%), Gaps = 50/712 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E+++ + +++ L + I +H YY P I D+++D L + A+ +P+ Sbjct: 3 ESINEKDIYNKINELRERIEHHSILYYVQDSPEISDADFDMLMKELIALEEKYPEYI--- 59 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 + P +IGGE +V HS+ +SL ++ +DL F +R+ + K + Sbjct: 60 TEDSPTQRIGGEALSKFDQVRHSVQMMSLSNAFSKQDLLDFDSRVRQMIPKP-----EYV 114 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 LE KIDG + + YEKGKF A RGDG GEDV+ ++ I +IP L + + VRG Sbjct: 115 LEFKIDGLSVALTYEKGKFKVGATRGDGVVGEDVTKNLKTIKSIPMKLKEEVS--LVVRG 172 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EVYI K F LN + G +ANPRNAA+G LR+L+ R L+ F+ L + + Sbjct: 173 EVYIPKEKFKELNLQQEENGLALFANPRNAAAGSLRQLDSNITAKRPLDIFIFNLQEIID 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E L+ ++ LG V+ ++ + + R L ++IDG+V KV++ Sbjct: 233 KDIYTHSEALEYLKALGLKVSPMRNVYSSMEAVWDEISVWHDKRHELDFEIDGIVIKVND 292 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + + LGE A++PRW I++KF ++ T++ DI +Q+GRTG +TP A L PV I G+ + Sbjct: 293 LAQRAMLGETAKAPRWAIAYKFPAERQLTQIEDIIVQVGRTGTITPTAILTPVRIAGSTV 352 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHNED+IK +DI++ D +++AG++IP+V ++ +++R F Sbjct: 353 SRATLHNEDFIK-----------AKDIKIKDWAYIQKAGDIIPEVYEVDISKRTGVEYEF 401 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C + VR K + C AQ + HFVS+ A +I+ LG+ Sbjct: 402 KMPETCPECHTPTVRVEGEAALK-------CPNITCPAQIKRGIIHFVSKSAMDIDKLGE 454 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ A I ADI+ L +I + G SV+NL +SI + + Sbjct: 455 AIVIQLYE----AGLINDMADIYYLNPD------EILALPRMGSKSVSNLMNSIEESKTA 504 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L+R + LGIR++G + A++LA Y + Q L+++ +G+ + Sbjct: 505 GLDRLLIGLGIRYIGTKAAKTLASVYSDIEQIKQA----------SIEELLQIDEIGEKM 554 Query: 609 AQAIVEFYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 AQ+I EF++ N+ +E L L VS S+ + E K V TGTL+ ++R +A Sbjct: 555 AQSIFEFFKVEENLNLIERLKLAGVSMSVDKKNSQQKPIFEGMKFVLTGTLETLKRDEAA 614 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + S+ +S+ T +I G+ GSKL+KA LGV ++NEE F LL+ Sbjct: 615 VLIEERLGKTSSSVSKNTTAVIAGEEAGSKLDKAIALGVAVINEEVFKKLLK 666 >gi|240145659|ref|ZP_04744260.1| DNA ligase, NAD-dependent [Roseburia intestinalis L1-82] gi|257202247|gb|EEV00532.1| DNA ligase, NAD-dependent [Roseburia intestinalis L1-82] Length = 671 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 207/710 (29%), Positives = 357/710 (50%), Gaps = 50/710 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E+ ++ L +I+YH D YY P I D E+D L ++ + P+L Sbjct: 1 MTPEE---QIKELRDKINYHSDRYYNQDSPEISDYEFDMLMQQLKKLEKEHPELV---TK 54 Query: 72 NGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P +GG + V H++P LSL+ +++ E++ F+ ++ + F + Sbjct: 55 DSPTQHVGGTAKRTAGVLVHHNVPMLSLQDVFSKEEVVDFVEQMKEQL-----DDPEFVV 109 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG + +RYE G A RGDG + GEDV+A + I + + L PE +E+RG Sbjct: 110 EYKIDGLSMALRYENGDLSLALTRGDGVNFGEDVTANAKVISDVKKKLKDK-PEYLEIRG 168 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EVY+ DF +N++ +G+K +ANPRN A+G LR+L+ R L+ FV + + Sbjct: 169 EVYMKNEDFDRVNEQQELLGKKIFANPRNCAAGTLRQLDSRVTKERKLSMFVFNIQQVRG 228 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + + ++ G P+ + T + + + R L YDIDG V K++ Sbjct: 229 MDIMTHTQGYEFLKRQGIPIIEDYKVCKTADEVWNAITAIGENRGNLGYDIDGAVIKINR 288 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +S ++ LG ++ P+W I++K+ ++ T+LLDI++ +GRTG +TP A EPV + G + Sbjct: 289 YSDRELLGNTSKVPKWAIAYKYPPEEKETKLLDIELSVGRTGRITPTAVFEPVRLCGTSV 348 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHN+D+I L D+ +GD ++V ++GE+IPKV ++ +R + F Sbjct: 349 SRATLHNQDFIDDL-----------DVGIGDTIVVYKSGEIIPKVKEVRKEKRPDGWKRF 397 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP+C ++ R+ + A +CT C AQ + +FV RDA +I+G G Sbjct: 398 MIPDVCPVCGAKTEREKD------TADIKCTSP-NCPAQLERHIINFVGRDAMDIKGFGT 450 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 ++ + I+ ADIF L+ ++ + + + L ++I K + Sbjct: 451 VYIEELVR----LGYIKDIADIFELKDHREELIEQGII---GKEKNTDKLLETIEKAKEN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + GI +VG A+++ K + S + D +L+ V VG++ Sbjct: 504 DAYMLLTGFGIPNVGKAAAKTIMKRFPSILDLEDA----------DRDALMEVDDVGEVS 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A I F+ + +N + L + + S + K +V TGTL + R +A E Sbjct: 554 ADCIFRFFHDEKNKEMIARLKSLGVNMEAEETETIDSAVSGKTVVITGTLPTLGRKEAAE 613 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 V + G VS +S+KTD ++ G++ GSKL KAQ+LG+ ++ E + LL Sbjct: 614 LVEKYGGKVSGSVSKKTDYVVAGESAGSKLTKAQELGITVLTEAELFVLL 663 >gi|298528094|ref|ZP_07015498.1| DNA ligase, NAD-dependent [Desulfonatronospira thiodismutans ASO3-1] gi|298511746|gb|EFI35648.1| DNA ligase, NAD-dependent [Desulfonatronospira thiodismutans ASO3-1] Length = 679 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 253/716 (35%), Positives = 372/716 (51%), Gaps = 49/716 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E L +EI+ H+ YY P+I D EYD + + P L S P Sbjct: 6 EHIEHRAEELRREINLHNYYYYVLDDPLISDVEYDRMLAELKDLEEKHPGLKHSG---SP 62 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 K+G HS+P SL+ +++E++R+F+ RI + D F EPK+ Sbjct: 63 TMKVGAPPAGQFEHREHSLPMYSLDNSFSLEEVREFVQRIKKQIPDADPY---FWAEPKL 119 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR--VLSLNIPEIIEVRGEVY 192 DG + I YE G FV A+ RGDG+ GEDV+ IR I +P + PE +EVRGEV Sbjct: 120 DGLAVEIIYENGLFVAASTRGDGYVGEDVTDNIRTIRNLPLTLFYTEFFPEYLEVRGEVV 179 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIF- 250 I + +F LN++ G K +ANPRNAA+G +R+L+ +R + FF +G G + Sbjct: 180 IPRQEFTRLNEDKARKGEKVFANPRNAAAGSVRQLDSRITASRPVYFFSYGTGISRFKSG 239 Query: 251 --AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + Q E+ + + LG PV G R + Y E R ++IDGLV KV++ Sbjct: 240 AGWQSQEEIARGLNALGLPVVPGGRICRDPAEVEECYREQLDRREQSDFEIDGLVIKVND 299 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 LQ++LG +R+PRW ++ KF Q T+L DI +Q+GRTG+LTPVA LEP+N+GG ++ Sbjct: 300 IGLQQRLGFTSRAPRWAMAVKFPALQGRTKLKDIQVQVGRTGVLTPVAILEPLNLGGVVV 359 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHNE+ I+ +D++VGD VLV+RAG+VIP+VV ER + F Sbjct: 360 SRASLHNENEIR-----------AKDLKVGDTVLVQRAGDVIPEVVRPETRERDGTQKEF 408 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP CQS V R + AA RC +C A+ ++L +F + +IEGLG+ Sbjct: 409 VFPEKCPACQSPVARIDDE------AAIRCLNM-SCPARLEQQLIYFAGKQGLDIEGLGR 461 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 Q + K + PADIF L K+ L + L + Sbjct: 462 QWIKVLVKK----GLLCSPADIFRLSLDDLLPLDKMGRKLAQNMLDSIRL-----AAQKA 512 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L R I +LGIRHVG E A+ LA Y A N SL + +G + Sbjct: 513 TLPRLIAALGIRHVGVETAKRLAANYKDLDELAAAEKN----------SLQMIEDIGPEV 562 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A +I F+ NP+N +E + ++ KKLVFTG + + R +A+E Sbjct: 563 ASSIAGFFANPQNRKLLEEFKEIGLWPEHAAAAGEDLPLKGKKLVFTGGMHNLSRDRARE 622 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 V +LG VS +S TD++I GDNPGSKL KA++LG+ I++E++FL L++ ++ + Sbjct: 623 IVEKLGGKVSGSVSGNTDMVIAGDNPGSKLSKARELGLDILSEQEFLDLIENWSAS 678 >gi|91216495|ref|ZP_01253461.1| DNA ligase [Psychroflexus torquis ATCC 700755] gi|91185289|gb|EAS71666.1| DNA ligase [Psychroflexus torquis ATCC 700755] Length = 667 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 217/708 (30%), Positives = 358/708 (50%), Gaps = 49/708 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++ +L QE+ H+ YY P I D ++D + P+ DPN P Sbjct: 2 SIQDQIENLRQELHEHNYKYYVLDAPEISDYDFDMKLNALQELEKTHPEYK---DPNSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GGE+ + V H P SL ++ EDL + TR+ + ++ + FT E K D Sbjct: 59 MRVGGEVTKNFKTVVHDFPMYSLSNSYSKEDLEDWQTRVQKIIEE----PVEFTCELKYD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194 G I++ YE G+F+ A RGDG G++V+ ++ I ++P L N P ++RGE+ + Sbjct: 115 GASISLTYEDGEFLRAVTRGDGTQGDEVTHNVKTIRSVPLKLKGDNYPRRFDIRGEIVLP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 F +N E + +G +PYANPRN SG L+ + ++ + + + Q Sbjct: 175 YKGFAKMNAERVELGEEPYANPRNTTSGSLKLQDSAEVAKRPLLCLLYNLTGENLGVSTQ 234 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L K R GF V + + + +Y N R LPY+ DG+V KV+ Q++ Sbjct: 235 MESLNKSREWGFNVPKEAKLTKSIDEVFAYINYWDEHRHDLPYETDGVVIKVNSLQQQEE 294 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW +++KF +Q ST L I Q+GRTG +TPVA L+P+ + G + A+LH Sbjct: 295 LGYTAKSPRWAMAYKFKAEQVSTTLNQITYQVGRTGAITPVANLDPIQLAGTTVKRASLH 354 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-PDAQPFSFPSF 433 N D I+ L DIR GD V V++ GE+IPK++ + +R +QP + Sbjct: 355 NADQIEKL-----------DIREGDVVFVEKGGEIIPKIIGVDFKKRDSESSQPTVYLKE 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C++ + R A H C C Q + R++HF+SR A +IEGLG + + Sbjct: 404 CPECETPLERKEGE------ALHFCPNTEGCPPQIIGRIQHFISRKAMDIEGLGGETVAL 457 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + + I AD++TL++ + + S NL + ++I ER Sbjct: 458 LVRED----LIEDYADLYTLRKEDV------LPLERMAEKSAVNLIKGVEASKDIPFERV 507 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 ++ LGIR+VG +A+ L K + S A +L+ V +G+ IAQ++V Sbjct: 508 LYGLGIRYVGETVAKKLVKAFKSIDVLASA----------SLENLVAVDEIGERIAQSVV 557 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 +F+++ N ++ L E+ S+ + + LV +G K+ R + Q+ + Sbjct: 558 DFFKDDANKLRIDRLRNYGLNLEISEEEMEGQSNTLIDLTLVISGVFLKVSRRELQDLIE 617 Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G ++ +S+KTD ++ G+N G SKL KA+ LGVKI+ E++FL ++ Sbjct: 618 KHGGKNTSSISKKTDYLVAGENMGPSKLAKAENLGVKIITEDEFLTMV 665 >gi|302537077|ref|ZP_07289419.1| DNA ligase, NAD-dependent [Streptomyces sp. C] gi|302445972|gb|EFL17788.1| DNA ligase, NAD-dependent [Streptomyces sp. C] Length = 736 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 216/739 (29%), Positives = 354/739 (47%), Gaps = 61/739 (8%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 AR++ L +++ H YY +P++ D+E+D L R +A+ +P+L P+ P Sbjct: 14 AREQHQLLAEQVEEHRFRYYVNDQPVVSDAEFDQLLRSLEALEEQYPEL---RTPDSPTQ 70 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 K+ G V H LSL+ ++ E+L + R+ R D + + E K+DG Sbjct: 71 KVAGAYETDFASVEHRERMLSLDNAFDDEELSAWADRVARDVNTPDYH---YLCELKVDG 127 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISK 195 + + YE G+ AA RGDG +GED++ +R I IP L + P ++E+RGEVY Sbjct: 128 LAVNLTYENGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLKGDRIPALVEIRGEVYFPM 187 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 F LN ++ KP+ANPRNAA+G LR+ +P TR L+ VHG+G + Q Sbjct: 188 EKFEELNARLVEASGKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAREGFEIERQ 247 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 + + +R G P + ++ + + R ++ ++IDG+V K+DE +LQ + Sbjct: 248 SQAYELLREWGLPTARHNKVVSSLAEVREFIALFGENRHSVEHEIDGVVVKLDEIALQGR 307 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG AR+PRW I+ K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ + ATLH Sbjct: 308 LGSTARAPRWAIAWKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVAGSEVEFATLH 367 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N++ +K + + +GD V++++AG+VIP+++ +V+ R + F P+ C Sbjct: 368 NQEVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTEREFVMPALC 416 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK------ 488 P C + + + RC G C AQ ER+ + R + +IE G Sbjct: 417 PECGTELRPM-----KEGDIDVRCPNGQTCPAQLRERIYYLAGRQSLDIENFGIVAAAAL 471 Query: 489 ------------QQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTSTTK-----IENILG 529 + D F + + I+ L +R + + N G Sbjct: 472 TGPLEPAQPPLLDEGDLFDLTIEQLLPIKAYVRDPDSGLPKRDPKTGEEKIVTVFANQKG 531 Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 + + ++I + L R I L IRHVG A +LA+ + S Q Sbjct: 532 EPKKNALAMLENIAAAKQRPLARIINGLSIRHVGPVAAEALAREFRSIDRIEQATE---- 587 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEI 647 L VG IIA ++ E++ + + + Sbjct: 588 ------EELTATEGVGAIIAASLKEWFAVDWHQEILRKWRAAGVRMEEEGSAEEEGPRPL 641 Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 E +V TGTLQ R A+E + GA V+ +S+KT ++VGDNPGSK +KA QLG+ Sbjct: 642 EGLTVVVTGTLQNHTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAVQLGLA 701 Query: 708 IMNEEQFLFLLQQYNTTLR 726 I+++ F LL+Q R Sbjct: 702 ILDDAGFEVLLEQGADAAR 720 >gi|116074145|ref|ZP_01471407.1| DNA ligase [Synechococcus sp. RS9916] gi|116069450|gb|EAU75202.1| DNA ligase [Synechococcus sp. RS9916] Length = 691 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 216/724 (29%), Positives = 339/724 (46%), Gaps = 56/724 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ A + L ++ YY P++ D YD L R + A P L Sbjct: 1 MTAASA-QRAQELRGLLNTAAHAYYVLDAPVMEDPVYDRLYRELLELESADPSLVTV--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----NSI 126 + P ++GG V H I LSL+ +N E+L + R+ R ++ ++ Sbjct: 57 DSPTQRVGGTPAEGFSSVRHRIGLLSLDNAFNAEELGAWYGRLLRVLDREPSEGQPRPAL 116 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEII 185 E KIDG + + YE G V AA RGDG GED++A +R I ++P L P + Sbjct: 117 AMVGELKIDGNALALSYENGVLVRAATRGDGEQGEDITANVRTIGSVPLRLQLDQPPAWL 176 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG 244 EVRGE +I F +N + G +ANPRNA +G LR+L+P R L+FF + L Sbjct: 177 EVRGEAFIPDGVFDGINADRQQRGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLH 236 Query: 245 KTSEIF---AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 + Q++ LQ +R GF VN + +++N R L Y DG Sbjct: 237 LPDDWQGQRPTSQWDSLQWLRDAGFKVNPNAELLPDLDAVEAFFNSWDGGRRQLDYATDG 296 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V K+D LQ G ++PRW I+ K+ ++A ++LL + Q+GRTG++TPVA E V Sbjct: 297 VVVKLDNLRLQDAAGFTQKAPRWAIALKYPAEEAPSKLLRLTCQVGRTGVITPVAEFEAV 356 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G ++ ATLHN D + L D+ GD ++V++AGE+IP+VV ++ R Sbjct: 357 PLAGTSVSRATLHNADRLDEL-----------DLHAGDTIVVRKAGEIIPEVVRVLKELR 405 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 A+ P CP C S +VR+ AA RC +C A L+H+VS+ A Sbjct: 406 PTSAERLQLPHTCPECGSTLVREAGE------AATRCINS-SCPAILRGALRHWVSKGAL 458 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +++GLG + ++ ++ AD++ L +S + G S NL + Sbjct: 459 DVDGLGSKLIEQLVDR----GLVQSIADLYRLDAALLSS------LERMGQKSAENLVSA 508 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 + R R ++ LGI HVG A++LA + N S+ V Sbjct: 509 LAASRQQGWARQLYGLGIHHVGEVNAKALAATFPDADLLQTAACN-------APESITAV 561 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEV-------SPSIGRHEKNVSSEIENKKLVF 654 +GD IAQ++ +++ NP N+ + L ++ + + V Sbjct: 562 FGIGDEIAQSLQQWFANPSNLQLLNGLREQGFSLALSADEQRRAEAASSERHLSGSTFVL 621 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TGTL + R +A+E + G VS +S+KT ++ GD GSKL KA+ LG+ I++E Sbjct: 622 TGTLPTLSRSQAKELIEAAGGKVSGSVSKKTSYVVAGDEAGSKLTKAESLGLTILDETGL 681 Query: 715 LFLL 718 LL Sbjct: 682 QALL 685 >gi|167763098|ref|ZP_02435225.1| hypothetical protein BACSTE_01465 [Bacteroides stercoris ATCC 43183] gi|167699438|gb|EDS16017.1| hypothetical protein BACSTE_01465 [Bacteroides stercoris ATCC 43183] Length = 665 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 222/707 (31%), Positives = 356/707 (50%), Gaps = 50/707 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++++ L ++ H+ YY + P I D E+D R + P+ +D N P Sbjct: 3 VKEKIDQLRADLHRHNYNYYVLNAPEISDKEFDDRMRELQELEKEHPEY---QDDNSPTM 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G ++N + +V H P LSL ++ ++ F R+ + + E K DG Sbjct: 60 RVGSDLNKNFTQVAHKYPMLSLGNTYSESEVTDFYDRVKKAL----NEDFEICCELKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 T I++ YE GK V A RGDG G+DV+ ++ I TIP VL + PE E+RGE+ + Sbjct: 116 TSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGSYPESFEIRGEILMPWE 175 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN E A +ANPRNAASG L+ N + E+ G YE Sbjct: 176 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGEELPCDGHYE 235 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 LQ GF + +++A++ + Y + R LP DG+V KV+ QK LG Sbjct: 236 NLQAAAGWGFKTSEHMKKAHSLEEVFEYIRYWDTERKNLPVATDGIVLKVNSMRQQKNLG 295 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 FTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHNA 355 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCP 435 D I+GL D+ +GD V V++ GE+IPK+ + + R + F + CP Sbjct: 356 DIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSMLIGEKVKFITHCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S+++R AAH C +C Q +++HF+SR A NI+GLG + +D F+ Sbjct: 405 ECGSKLIRYEGE------AAHYCPNETSCPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + I+ AD++ L + + G+ S N+ I + + ER +F Sbjct: 459 R----LGLIKNTADLYQLTADDIKN------LDRMGEKSAENIIKGIEASKEVPFERVLF 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG +A+ +AK + + LI + +G+ IAQ+I+ + Sbjct: 509 ALGIRFVGETVAKKIAKSFNDIDELENA----------NLEKLINIDEIGEKIAQSILTY 558 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + NP N +E L K + R E+++S ++ + +V +G R + +E + + Sbjct: 559 FANPLNCELIERL-KSTGLQLYRREEDLSGYTDKLAGQSIVISGVFTHHSRDEYKELIEK 617 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G +S KT I+ G+N G +KLEKA +LG+K+M+E++FL L+ Sbjct: 618 NGGKNVGSISAKTSFILAGENMGPAKLEKAHKLGIKLMSEDEFLTLI 664 >gi|291278945|ref|YP_003495780.1| NAD-dependent DNA ligase [Deferribacter desulfuricans SSM1] gi|290753647|dbj|BAI80024.1| NAD-dependent DNA ligase [Deferribacter desulfuricans SSM1] Length = 663 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 244/705 (34%), Positives = 383/705 (54%), Gaps = 52/705 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E KE L EI+YHD YY + P+I D EYD L +R I +P++ P P Sbjct: 3 ESILKEYQKLVDEINYHDYRYYVLNDPVISDYEYDQLYKRLKEIESKYPEII---SPYSP 59 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G +L V H + LSL+ +N +L+ F R+ + + F +EPKI Sbjct: 60 TQRVGYAPVSNLKTVKHEVKMLSLDNTYNEGELKDFYNRVLKNLESVP----SFVVEPKI 115 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++ YE G A RGDG +GEDV+ ++ I +IP L + + + VRGEV++ Sbjct: 116 DGAAVSLTYEDGILQIGATRGDGVTGEDVTHNVKTIKSIP--LKIAVKGKLVVRGEVFLP 173 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 K++F +NDE + G +P+ANPRNAA+G L+ L+P N + Sbjct: 174 KSEFERINDERVKNGLEPFANPRNAAAGTLKLLDPRIA-AQRNLDIFIYSVDIGRKHDTH 232 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 ++ L ++ LGF VN +++ +F I+S+ + +R L Y+IDG V KV+E+S Q+Q Sbjct: 233 FDDLNYLKGLGFKVNPLIKKVESFEDIISHIENLGKMRDELDYEIDGAVIKVNEYSYQEQ 292 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LGE + PRW ++ K+ + +T L D+ Q+GRTGI+TPVA LEPV+I G+++ ATLH Sbjct: 293 LGETIKYPRWAVAFKYPPELKTTVLKDVIFQVGRTGIITPVAVLEPVHISGSVVKRATLH 352 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED I+ L D+++GD V V+++GE+IPK++ ++ +R + FP C Sbjct: 353 NEDEIRRL-----------DVKIGDTVFVEKSGEIIPKIIKVVKEKRTGKEKEIVFPEKC 401 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C V ++ A+ CSA+ + HF SRDA +I+GLG+ ++ F Sbjct: 402 PVCNGLVRKEN---------AYYVCLNPDCSAKLKASIIHFASRDAMDIKGLGEAIVERF 452 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 ++ ADI+TL KI + GFG S NL SI +N S +R + Sbjct: 453 VD----LGFLKSIADIYTLDFE------KIALLDGFGKKSAENLKKSIEDSKNRSFDRVL 502 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LGIRHVG + AR L ++ + + + L+ + VG+IIA+++ Sbjct: 503 YALGIRHVGIKTARILTNHFKNIEKLQKAT----------IEELVSIDEVGEIIAKSVYY 552 Query: 615 FYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 ++ + +E L S+ ++N S +++ K V TGTL K R+ E + +L Sbjct: 553 TLRDENFLKLIERLKSYGLKFSMEDDKENKSEKLKGLKFVITGTLSK-PRNYYVELIEKL 611 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G VS+ +S+KTD +IVG++PGSK KA LGVK +NEE+F L+ Sbjct: 612 GGEVSSSVSKKTDYVIVGEDPGSKYNKAISLGVKTINEEEFYKLI 656 >gi|312863154|ref|ZP_07723392.1| DNA ligase (NAD+) [Streptococcus vestibularis F0396] gi|322516268|ref|ZP_08069198.1| NAD-dependent DNA ligase LigA [Streptococcus vestibularis ATCC 49124] gi|311100690|gb|EFQ58895.1| DNA ligase (NAD+) [Streptococcus vestibularis F0396] gi|322125241|gb|EFX96614.1| NAD-dependent DNA ligase LigA [Streptococcus vestibularis ATCC 49124] Length = 652 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 217/701 (30%), Positives = 356/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 K + L +++ + YY P + D++YD L R + P+L ++ + P ++ Sbjct: 2 EKRMKELVSKLNQYAKEYYTEDNPSVSDADYDKLYRELVDLEVEHPELVQA---DSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + + E KIDG Sbjct: 59 VGGLVLDGFEKYQHEYPLYSLQDAFSREELDAFDKRVK-----DEFPNADYMAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y G A RGDG GE+++ ++ I IP L L+ P I VRGE Y+ + + Sbjct: 114 SISLTYVDGVLQVGATRGDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAE 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N + G +ANPRNAA+G LR+L+ + + S Q ++ Sbjct: 172 FERINIQRQENGEAEFANPRNAAAGTLRQLDTKVV-AERRLATFLYQEASPTERLTQNDV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ LGF VN ++ I + + R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LNEVAELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDDLAYDIDGVVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ LL +D Q+GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAELLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+ ++ ++R P P+ CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQE-PMEVPTQCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S ++ + A RC +C AQ E L HF SRDA NI G+G ++ FK+ Sbjct: 399 GSGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNIAGMGPSVVEKLFKA 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 E ++ ADI+ L + + GF + S LY +I + S E+ ++ L Sbjct: 452 E----LVKDVADIYGLNSQDF------LQLEGFKEKSAEKLYSAIQVSKENSAEKLLYGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVGA++++ L + + S Q A D ++ V +GD+IA++I ++ Sbjct: 502 GIRHVGAKVSKQLLEAFGSIQELASA----------DVEAIAAVDGLGDVIAKSIQRYFA 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 ++ L + + + K +V TG L+ ++R +A+ + LGA Sbjct: 552 KEEAQVLMKELESYGVNLSYLGQKVADDAILSGKTVVLTGKLEHLKRSEAKAKLEALGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTD+++ G + GSKLEKAQ LG+++ +E L L Sbjct: 612 VTGSVSKKTDLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL 652 >gi|317477010|ref|ZP_07936252.1| DNA ligase [Bacteroides eggerthii 1_2_48FAA] gi|316906803|gb|EFV28515.1| DNA ligase [Bacteroides eggerthii 1_2_48FAA] Length = 666 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 221/707 (31%), Positives = 353/707 (49%), Gaps = 49/707 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++ + L ++ H+ YY + P I D E+D + R + P+ +D N P Sbjct: 3 IKERIDQLRTDLHRHNYNYYVLNTPEISDKEFDDMMRELQDLEKEHPEY---QDENSPTM 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G ++N + +VTH P LSL ++ ++ F R+ + + E K DG Sbjct: 60 RVGSDLNKNFTQVTHKYPMLSLGNTYSENEVTDFYDRVKKAL----NEDFEICCELKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 T I++ YE GK V A RGDG G+DV+ ++ I TIP VL N PE E+RGE+ + Sbjct: 116 TSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGNNYPEHFEIRGEILMPW 175 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 F LN E A +ANPRNAASG L+ N + E+ G Y Sbjct: 176 EVFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGEELPCDGHY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ GF ++ ++ ++ + Y + R LP DG+V KV+ QK L Sbjct: 236 ENLQTAAGWGFKISEHTKKTHSLEEVFEYIRYWDTERKNLPVATDGIVLKVNSMRQQKSL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNRVTYQVGRTGAITPVANLDPVQLSGTIVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434 D I+GL D+ +GD V V++ GE+IPK+ + + R + F + C Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARGMLIGEKVKFITHC 404 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S++VR AAH C AC Q +++HF+SR A NI+GLG + +D F Sbjct: 405 PECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDTF 458 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 ++ I+ AD++ L + + G+ S N+ I + + ER + Sbjct: 459 YR----LGLIKDTADLYQLTAEDIKN------LDRMGEKSAENIIKGIKASKEVPFERVL 508 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG +A+ +AK + + + D L + +G+ IAQ+I+ Sbjct: 509 FALGIRFVGETVAKKIAKSFNNIEELENA----------DLEKLTSIDEIGEKIAQSILI 558 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 ++ +P N+ +E L + E + ++ + +V +G R + ++ + + Sbjct: 559 YFSSPLNVNLIERLKSAGLQLYRKEEDLNEYTDKLAGQSIVISGVFTHHSRDEYKDLIEK 618 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G +S KT I+ G+N G SKLEKA +LG+KI++E++FL L+ Sbjct: 619 NGGKNVGSISTKTSFILAGENMGPSKLEKAHKLGIKIISEDEFLTLI 665 >gi|229823252|ref|ZP_04449321.1| hypothetical protein GCWU000282_00550 [Catonella morbi ATCC 51271] gi|229787418|gb|EEP23532.1| hypothetical protein GCWU000282_00550 [Catonella morbi ATCC 51271] Length = 671 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 222/715 (31%), Positives = 365/715 (51%), Gaps = 56/715 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 + + + L ++ ++ + YY + ++ D+ YDAL R + I A P+ Sbjct: 2 KMPSQNLQARLEEVKHLLNDYAYHYYVLDQSLVSDASYDALYRELEEIEAAHPEWI---T 58 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P+ P ++G ++ KV H+ SL ++ E++ +FI R+ ++ + + F Sbjct: 59 PDSPTQRVGDQLLEGFSKVAHAESMYSLGNAFSPEEVTQFIERVT----QQVEGPVSFMC 114 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG I + Y+ G FV A RGDG GED++ +R I ++P L N+ +EVRGE Sbjct: 115 ECKIDGLAIALTYQDGVFVRGATRGDGTIGEDITQNLRTIRSLPLRLRQNLS--VEVRGE 172 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249 Y+ K FLALN+E A G++ + NPRNAA+G LR+L+P R LN F++ T E Sbjct: 173 CYMPKAVFLALNEEREAQGQEIFKNPRNAAAGGLRQLDPRAVADRQLNIFLYSAVYTDEF 232 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + Q + LG N R+ T ++ Y + R LPY+IDG+V KV+ Sbjct: 233 HPESQAGLFAAFEQLGLRTNPLRRECQTAEEVIDYIQMIGQQRHDLPYEIDGVVIKVNHI 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+ LG ++PRW I++KF ++A T L +++ +GRTG++TP A ++PV + G + Sbjct: 293 DQQQALGFTVKAPRWAIAYKFPAEEAVTTLREVEWTVGRTGVVTPTAIMDPVPLAGTTVQ 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN D I+ L D+R+GD+V + +AG++IP++ +++ +R D+QP + Sbjct: 353 RASLHNVDLIESL-----------DVRIGDQVTIHKAGDIIPEITSVLLAKRPQDSQPLA 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP CQ+ +VR + L C AQ+L L HFVSR A NI+GLG + Sbjct: 402 IPTHCPECQTALVRQGEEVALR-------CPNLVCPAQRLALLSHFVSRGAMNIQGLGPR 454 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ S+ + L + S + ++ + S L +I ++ S Sbjct: 455 ILNQLVASQA----------VTELDDLYRLSLEDLLSLDKIQEKSAQKLLAAIEASKSNS 504 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 ER +F LGIRHVGA+ AR + + + +Q + + VG II+ Sbjct: 505 AERLLFGLGIRHVGAKAARLVLQVFGDLNRLSQAT----------AEEIGAIEGVGPIIS 554 Query: 610 QAIVEFYQNPRNICAVEALLKEVS--------PSIGRHEKNVSSEIENKKLVFTGTLQKI 661 Q++V++ + ++ L + P + + K +V TGT++ Sbjct: 555 QSLVQYLTLESSQAMLKRLAEAGVNLTYQGPQPLEVAQGETANDFWLGKTVVLTGTMESY 614 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 R +A+E + GA V+ +S+KTD ++ G GSKL KA+ LGV I++E FL Sbjct: 615 SRSEAKELLEARGAKVTGSVSKKTDYLVAGQEAGSKLSKAESLGVTILDEASFLA 669 >gi|116493340|ref|YP_805075.1| NAD-dependent DNA ligase [Pediococcus pentosaceus ATCC 25745] gi|122265196|sp|Q03DT9|DNLJ_PEDPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116103490|gb|ABJ68633.1| NAD-dependent DNA ligase [Pediococcus pentosaceus ATCC 25745] Length = 675 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 222/716 (31%), Positives = 377/716 (52%), Gaps = 51/716 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +E + +E+A K +L + + YY P + D EYD A+ AFP++ Sbjct: 7 LEEMQVEEASKLAQNLREILDRWSKLYYTKDAPEVEDYEYDEKYADLVALEEAFPEIITQ 66 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + ++GGE+ KVTH+ P LS+ +++ ++L +F RI + + + + Sbjct: 67 ---DSITQRVGGEILEGFTKVTHTEPMLSMGDVFSRDELVEFDNRIQKNVG----HPVDY 119 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG I++ Y+ G+ + + RGDG+ GED++ ++ I ++P+ L P IEVR Sbjct: 120 NVELKIDGLAISLIYQDGELIQGSTRGDGNIGEDITKNLKTIKSVPQK--LTRPLSIEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE ++ K F LN + + G+ +ANPRNAA+G LR+LN R L+ F++ + ++ Sbjct: 178 GECFMPKASFAKLNAQQLEDGKPVFANPRNAAAGSLRQLNTNVTKKRDLDTFIYTVVDSN 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 ++ AK Q++ +Q M LGF N + Y + + R LPY IDG+V KV+ Sbjct: 238 QLGAKTQHQAIQMMAELGFNTNPTQEVCANLDEVWDYIAKYEGQREDLPYGIDGIVLKVN 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + SLQ++LG + PRW I++KF ++A+T + DI+ +GRTG++TP A ++PV + G Sbjct: 298 DLSLQQELGHTVKIPRWEIAYKFPPEEAATVVRDIEWTVGRTGVVTPTAVMDPVQLAGTT 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATL+N D + +D+ +GD VL+ +AG++IP++ +++ +R Sbjct: 358 VSRATLNNVDQL-----------TAKDVHIGDTVLLHKAGDIIPEITRVVLEKRPVGISE 406 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P+ CP C +V A RC C AQ + RL+HF SR+A NI GLG Sbjct: 407 LDIPTHCPSCGKELVHLNGE------VALRCINP-DCPAQIVARLEHFGSRNAMNIMGLG 459 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 +Q+ + I D++ L ++ + GF + V NL ++I+ R Sbjct: 460 PKQIQQLYAKN----FIHHFDDLYKLTSE------ELSQLDGFKEKRVNNLLEAIDNSRK 509 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SLER I LGI+ VG ++AR+LA+ + + N Q V +G+ Sbjct: 510 NSLERLINGLGIQGVGTKMARTLAEKFGTMDNLMQTT----------IEEFDAVDTIGET 559 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKIQRH 664 +A + F+Q+ ++ L + ++ + KK+V TG L++ R+ Sbjct: 560 LANNLATFFQSDVAQNMIDELKAVGVNMEYLGVKPAESPDGYYKGKKVVLTGKLEQYTRN 619 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + +E + LGA V+ +S+KTDI+I G + GSKL KAQ LG++I++E + + +Q Sbjct: 620 ELKERLISLGADVAGSVSKKTDILIAGADAGSKLTKAQALGIEILDETEAIAKFEQ 675 >gi|94984803|ref|YP_604167.1| DNA ligase, NAD-dependent [Deinococcus geothermalis DSM 11300] gi|122986680|sp|Q1J0I6|DNLJ_DEIGD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|94555084|gb|ABF44998.1| DNA ligase, NAD-dependent [Deinococcus geothermalis DSM 11300] Length = 684 Score = 512 bits (1318), Expect = e-142, Method: Composition-based stats. Identities = 220/704 (31%), Positives = 349/704 (49%), Gaps = 46/704 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + +L EI H+ YY+ P I D EYD L R A+ A P+ N P + Sbjct: 22 EHYLALRAEIERHNRAYYELDAPEIPDDEYDRLVRELRALEAAHPEWVAE---NSPAQTV 78 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS-IFFTLEPKIDGT 137 GG + + V H P SL+ +++ E+L ++ ++ R D+ +T E KIDG Sbjct: 79 GGAPSSAFLPVEHPTPMTSLDNVFSDEELAEWQEKLARALNLPPDHDGFTYTGELKIDGL 138 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + Y G +AA RG+G GE V+ + IP IPR L E+ EVRGEVY+S+ D Sbjct: 139 SVNLYYADGVLQWAATRGNGRVGEMVTEQVLTIPGIPRALPGLTGEL-EVRGEVYLSRAD 197 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F A N +G NPRN A+G LR+ +P TR+L + LGK + + Q E Sbjct: 198 FAAFNARAEELGLPLLKNPRNGAAGALRQKDPEVTRTRHLKALFYSLGKHDGVPVRTQGE 257 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L + GFP + Y+ M + R+ +D DG V K+D +LQ + G Sbjct: 258 VLAWLAEQGFPTSRYSETFTGLQAAADYHRRMTAQRAQFEFDADGTVLKLDSLALQAEAG 317 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +R+PRW +++KF ++ T L I + +GRTG L P+A L P I G+ ++ ATLHNE Sbjct: 318 STSRAPRWAVAYKFPVEEVETVLESITVNVGRTGKLAPLAHLSPRLIEGSTVSKATLHNE 377 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI+ L D+R+GD V+V+++G VIP+++ +++ +R PDA P+ FP+ CP Sbjct: 378 DYIRDL-----------DLRIGDTVVVRKSGGVIPQIMRVVLEKRPPDAAPYRFPTHCPE 426 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C VVR A C AC AQQ ERL++FVSR A ++ G+G++ ++ Sbjct: 427 CGHEVVRAEG------DANTYCPNP-ACPAQQFERLRYFVSRGAMDVRGVGEKLIEQLLA 479 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + + AD++ L Q S + G+ N+ + + L R I + Sbjct: 480 T----GLVHDAADLYQLTAEQLAS------LERSGEKKAANILAQLEASKTRPLWRLINA 529 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI HVG A++LA+ + + S+ VP +G IAQ++ Sbjct: 530 LGINHVGERNAQALARAFGTLDALLAATP----------ESIEAVPGLGRTIAQSVSAAL 579 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 +P + L + + + V TGTL + R + + + GA Sbjct: 580 ADPSMQDLIRRLRERGLKPVEETAPRGD-ALAGLSFVLTGTLSR-PRDEIKARLESAGAR 637 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 V+ +++KT +I G+ GSKL++A++LG+ +++E LL++ Sbjct: 638 VTGSVTKKTSYLIAGEEAGSKLDRARELGIPVLDEAGLGALLEE 681 >gi|227893041|ref|ZP_04010846.1| DNA ligase [Lactobacillus ultunensis DSM 16047] gi|227865154|gb|EEJ72575.1| DNA ligase [Lactobacillus ultunensis DSM 16047] Length = 667 Score = 512 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 210/714 (29%), Positives = 363/714 (50%), Gaps = 50/714 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + +++++A+KE +SL +++ D YY P + D+ YD R + FP++ Sbjct: 1 MTEITLDEAKKEAASLRTQLNEWADAYYSKDAPEVEDNVYDQSYNRLLELERQFPEIV-- 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ ++GG+++ KV H IP LS+ +++ ++L++F R+ + + + + Sbjct: 59 -TPDSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKDELKEFDQRMQKLVG----HPVEY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ YE GK V A+ RG+G+ GEDV+A R I IP+ L + EVR Sbjct: 114 NVELKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANARYIADIPQTLPEPL--TTEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+ K F LN+E G + NPRNAA+G LR+L+P R Sbjct: 172 GECYMGKKAFAKLNEEREEQGLTVFVNPRNAAAGSLRQLDPKVTKRRQLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ + +M LGF N R+ T I ++ +E + R++L Y IDG+V K+D+ Sbjct: 232 EGIISQHQAIDRMHELGFHTNETGRKLATLDEIFAFIDEYTAKRNSLTYGIDGIVLKIDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +++++LG + PRW I++KF ++ T + DI +GRTG++TP A ++PV + G + Sbjct: 292 LNIEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A+LHN DY+ + +R+GD V + +AG++IP++ ++++ +R D++ + Sbjct: 352 ARASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVMAKRPADSEVY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C ++V + A RC +C AQ E + HF SR A NI GLG Sbjct: 401 HIPDTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + + AD++ L + F + S+ NL +I+ + Sbjct: 454 KIVKQLIAKD----LVHNVADLYHLNADDL------AQLDHFKEKSINNLLTAIDNSKKN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E I LGI HVGA+ AR +A+ + + + + + +G I Sbjct: 504 SVELLITGLGIDHVGAKAARLIAQKFKNLEKIMSL----------GVQDIASIDTIGMTI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A+++ ++ P VE L + E + ++K +V TG L+ R + Sbjct: 554 AESMTTYFAQPEAQKLVEELRESGLNMDYLGEDEEVAPDNPFKDKTVVLTGKLEHYTRSE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + LGA V+ +S +TD +I G + GSK KAQQLGV ++ EE + ++ Sbjct: 614 FTKKLQALGAKVTGSVSHRTDYVIYGKDAGSKYNKAQQLGVPLLTEEDAIAQIE 667 >gi|312194886|ref|YP_004014947.1| DNA ligase, NAD-dependent [Frankia sp. EuI1c] gi|311226222|gb|ADP79077.1| DNA ligase, NAD-dependent [Frankia sp. EuI1c] Length = 755 Score = 512 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 223/715 (31%), Positives = 346/715 (48%), Gaps = 61/715 (8%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 + H YY + P + D+EYD L R A+ +P L P+ P K+ + Sbjct: 44 LDEHAYRYYVLAAPTVSDAEYDVLYRELVALEERYPAL---RTPDSPTQKVTETPSELFE 100 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 VTH LSL+ ++ ++ + + R + + + + E KIDG + + YE G Sbjct: 101 PVTHLERLLSLDNAFDEDEFQAWAARATK-----ETSVAAWLCELKIDGLAVDLVYEDGV 155 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDFLALNDEMI 206 V AA RGDG GED++A IR + ++P L P ++EVRGEV+ F+ALN+ ++ Sbjct: 156 LVRAATRGDGRVGEDITANIRTLRSVPARLRGPNVPALLEVRGEVFFPVAAFVALNESLV 215 Query: 207 AVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 A G+KPYANPRN A+G LR+ +P +R L +VHGLG Q + + LG Sbjct: 216 ADGKKPYANPRNTAAGSLRQKDPQVTASRGLAMYVHGLGARRGFDPPSQSAAYEALAELG 275 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 P++ R +++Y E R + ++IDG+V KVD+ + Q +LG +++PRW Sbjct: 276 LPISPRYRVVGDVDAVLAYIREWGEHRHDVEHEIDGVVVKVDDLATQGRLGATSKAPRWA 335 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 I++K+ ++ +TRL I++ +GRTG +TP LEPV + G+ + ATLHN D +K Sbjct: 336 IAYKYPPEEVTTRLKSIEVNVGRTGRVTPFGVLEPVTVAGSTVGLATLHNADQVK----- 390 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 + + +GD +++++AG+VIP++V +V+ R + F FP+ CP C + +VR Sbjct: 391 ------AKGVLIGDMIILRKAGDVIPEIVGPVVDLRDGTEREFVFPTHCPECGTELVRPE 444 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 A RC + C AQ+ E + H SR A +I+GLG + + A ++ Sbjct: 445 GE------ADTRCPNTVGCPAQRREAIIHLASRGALDIDGLGGESAIDLIE----AGRVK 494 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGD--------------------VSVTNLYDSINKR 545 AD+F L R T E I D + I Sbjct: 495 DIADVFHLDERSFTGMPLFERIETVRDENGKLVKGPDGKALRRSVLGKKAEQVLKGIEAA 554 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R+ L R + L IRHVG A++LA+ S L V VG Sbjct: 555 RHRPLWRLLVGLSIRHVGPSAAQALARELRSTDAIRAA----------SLEELAVVDGVG 604 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 IA A+VE++ +PR++ VE L + +V TG+L+ R Sbjct: 605 PTIAAAVVEWFADPRHLDLVERLRAGGVTLADEGADEGPRPLAGVTVVITGSLEGYTRDS 664 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A E V LG VS +S+KT +I G+N G+K +KA L V I++E LL + Sbjct: 665 ATEAVQNLGGKVSGSVSKKTSFVIAGENAGTKYDKAVSLKVPILDEAGLRVLLTE 719 >gi|313123177|ref|YP_004033436.1| DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279740|gb|ADQ60459.1| DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 671 Score = 512 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 208/714 (29%), Positives = 358/714 (50%), Gaps = 49/714 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S+E+A++E+ L ++ YY+ P++ D YD R + A+P+L + Sbjct: 4 SLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYPELK---SAD 60 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 ++GGE+N L KV H +P LS+ +++ E+L +F R+ + + + + +E Sbjct: 61 SITQRVGGEVNSDLPKVEHQVPMLSMGDVFSKEELAEFDQRVQKAIG----HPVAYNVEL 116 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG +++ YE+G+ A+ RG+G GEDV+ ++ I +P+ L I EVRGE Y Sbjct: 117 KIDGLSLSLEYEEGRLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGECY 174 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 +SK F LN E G +ANPRNAA+G LR+L+P + Sbjct: 175 MSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPPAGID 234 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q++ + +M LGF N R+ + Y +E R +LPY IDG+V KVD+ +LQ Sbjct: 235 SQHQAICEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDDLALQ 294 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 LG + PRW I++KF ++ T + +I+ +GRTG++TP A ++PV + G + A+ Sbjct: 295 ADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVRLAGTTVARAS 354 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D + L D+R+GD V + +AG++IP++ ++++++R D+ P+ P+ Sbjct: 355 LHNPDLLAKL-----------DVRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPYEVPT 403 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +V A RC +C AQ E + HF SR A NI GLG + + Sbjct: 404 KCPSCGEDLVHLNEE------VALRCINP-SCPAQIEEGITHFASRQAMNIAGLGPKIVK 456 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + + AD++ L + + F + S+ NL +I++ R S+E Sbjct: 457 QLIAKD----LVHNVADLYYLTADDLS------QLEHFKEKSINNLLAAIDQSRKNSVEL 506 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGI +VG + A+ +A+ + + A L + +G IA+++ Sbjct: 507 VLFGLGIDNVGRKAAQLIAQKFKNMSKIASA----------SVQELTAIDTIGMTIAESL 556 Query: 613 VEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++Q + L + G + + + K +V TG L R + + + Sbjct: 557 TAYFQQEEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAEFTKKL 616 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 LGA V+ +S+KTD ++ G++ GSKL KA+ L + + E + + +++ +T Sbjct: 617 QALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDTE 670 >gi|296140594|ref|YP_003647837.1| DNA ligase, NAD-dependent [Tsukamurella paurometabola DSM 20162] gi|296028728|gb|ADG79498.1| DNA ligase, NAD-dependent [Tsukamurella paurometabola DSM 20162] Length = 688 Score = 512 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 230/717 (32%), Positives = 360/717 (50%), Gaps = 44/717 (6%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 + L+ + R L +E+ H YY P++ D E+DAL +R A+ AFP+LA Sbjct: 3 KELTEDDRRA-WQELAEEVRGHQFRYYVQDAPVLSDGEFDALLKRLQAMEDAFPELAV-- 59 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P +GG + V H SL+ +++ +LR++I R+ R + S+ F Sbjct: 60 -PDSPTKLVGGGFSTEFTAVDHLERMYSLDNVFDEGELREWIARVQRDVGE----SVTFL 114 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEII 185 E KIDG + + YE G V A RGDG +GEDV+ R + +P L+ IP ++ Sbjct: 115 TELKIDGVALNLVYEDGALVRGATRGDGRTGEDVTLNARTLRDVPHRLTPSDEFPIPAVL 174 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG 244 EVRGEV+ DF LN ++A G+ P+ANPRN+A+G LR+ NP R L HGLG Sbjct: 175 EVRGEVFFRLADFEELNAGLVAEGKPPFANPRNSAAGSLRQKNPQITSRRKLGMICHGLG 234 Query: 245 KTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 + + +E + + G PV+ +Q +V R ++IDGLV Sbjct: 235 RIEGGWSPASLHEAYRALAAWGLPVSAHTKQVVGADAVVDRVFYWGEHRHDPEHEIDGLV 294 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KVDE +LQ++LG +R+PRW I++K+ ++ +T+LLDI + +GRTG +TP A + PV + Sbjct: 295 VKVDEIALQRRLGATSRAPRWAIAYKYPPEEVTTKLLDIRVNVGRTGRVTPYAYMAPVTV 354 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G+ + ATLHN ++ + + +GD V +++AG+VIP+V+ +V+ R Sbjct: 355 AGSTVEFATLHNASEVQR-----------KGVLIGDTVTIRKAGDVIPEVLGPVVDLRDG 403 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + F P CP C + + + + A RC C AQ ERL + R F+I Sbjct: 404 TEKAFVMPVTCPECGAALA-----PSKEGDADIRCPNTETCPAQLRERLFYLAGRTCFDI 458 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGLG + + + D+F+L T N G + L +++ Sbjct: 459 EGLGYEAATALT----ASPVLHNEGDVFSLTEADLTQVPLFTNDGGALSANAQRLLTNLD 514 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + L R + +L IRHVG AR+LA+ S + A D L V Sbjct: 515 VAKTKPLWRVLVALSIRHVGPSAARALAQELGSLEAIAAA----------DVDQLAEVDG 564 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 VG +IA+A+VE++ + VE + +V +E +V TG+LQ R Sbjct: 565 VGRVIAEAVVEWFTVGWHREIVEKWRAAGVTMEDERDASVPRNLEGLSIVVTGSLQNFSR 624 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+E + G ++ +S+KT ++VGD PGSK +KA+QLGV +++E F LL + Sbjct: 625 DGAKEAILVRGGKAASSVSKKTAFVVVGDAPGSKADKAEQLGVPVLDEAGFEKLLAE 681 >gi|218131107|ref|ZP_03459911.1| hypothetical protein BACEGG_02712 [Bacteroides eggerthii DSM 20697] gi|217986811|gb|EEC53144.1| hypothetical protein BACEGG_02712 [Bacteroides eggerthii DSM 20697] Length = 666 Score = 512 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 221/707 (31%), Positives = 353/707 (49%), Gaps = 49/707 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++ + L ++ H+ YY + P I D E+D + R + P+ +D N P Sbjct: 3 IKERIDQLRTDLHRHNYNYYVLNTPEISDKEFDDMMRELQDLEKEHPEY---QDENSPTM 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G ++N + +VTH P LSL ++ ++ F R+ + + E K DG Sbjct: 60 RVGSDLNKNFTQVTHKYPMLSLGNTYSENEVTDFYDRVKKAL----NEDFEICCELKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 T I++ YE GK V A RGDG G+DV+ ++ I TIP VL N PE E+RGE+ + Sbjct: 116 TSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGNNYPEHFEIRGEILMPW 175 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 F LN E A +ANPRNAASG L+ N + E+ G Y Sbjct: 176 EVFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGEELPCDGHY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ GF ++ ++ ++ + Y + R LP DG+V KV+ QK L Sbjct: 236 ENLQTAAGWGFKISEHTKKTHSLEEVFEYIRYWDTERKNLPVATDGIVLKVNSMRQQKSL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNRVTYQVGRTGAITPVANLDPVQLSGTIVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434 D I+GL D+ +GD V V++ GE+IPK+ + + R + F + C Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARGMLIGEKVKFITHC 404 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S++VR AAH C AC Q +++HF+SR A NI+GLG + +D F Sbjct: 405 PECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDTF 458 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 ++ I+ AD++ L + + G+ S N+ I + + ER + Sbjct: 459 YR----LGLIKDTADLYQLTAEDIKN------LDRMGEKSAENIIKGIKASKEVPFERVL 508 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG +A+ +AK + + + D L + +G+ IAQ+I+ Sbjct: 509 FALGIRFVGETVAKKIAKSFNNIEELENA----------DLEKLTSIDEIGEKIAQSILI 558 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 ++ +P N+ +E L + E + ++ + +V +G R + ++ + + Sbjct: 559 YFSSPLNVSLIERLKSAGLQLYRKEEDLNEYTDKLAGQSIVISGVFTHHSRDEYKDLIEK 618 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G +S KT I+ G+N G SKLEKA +LG+KI++E++FL L+ Sbjct: 619 NGGKNVGSISTKTSFILAGENMGPSKLEKAHKLGIKIISEDEFLTLI 665 >gi|325684644|gb|EGD26799.1| NAD-dependent DNA ligase LigA [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 671 Score = 512 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 208/714 (29%), Positives = 358/714 (50%), Gaps = 49/714 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S+E+A++E+ L ++ YY+ P++ D YD R + A+P+L + Sbjct: 4 SLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYPELK---SAD 60 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 ++GGE+N L KV H +P LS+ +++ E+L +F R+ + + + + +E Sbjct: 61 SITQRVGGEVNSDLPKVEHQVPMLSMGDVFSKEELAEFDQRVQKAIG----HPVAYNVEL 116 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG +++ YE+G+ A+ RG+G GEDV+ ++ I +P+ L I EVRGE Y Sbjct: 117 KIDGLSLSLEYEEGRLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGECY 174 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 +SK F LN E G +ANPRNAA+G LR+L+P + Sbjct: 175 MSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPPAGID 234 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q++ + +M LGF N R+ + Y +E R +LPY IDG+V KVD+ +LQ Sbjct: 235 SQHQAICEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDDLALQ 294 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 LG + PRW I++KF ++ T + +I+ +GRTG++TP A ++PV + G + A+ Sbjct: 295 ADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVRLAGTTVARAS 354 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D + L D+R+GD V + +AG++IP++ ++++++R D+ P+ P+ Sbjct: 355 LHNPDLLAKL-----------DVRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPYEVPT 403 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +V A RC +C AQ E + HF SR A NI GLG + + Sbjct: 404 KCPSCGEDLVHLNEE------VALRCINP-SCPAQVEEGITHFASRQAMNIAGLGPKIVK 456 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + + AD++ L + + F + S+ NL +I++ R S+E Sbjct: 457 QLIAKD----LVHNVADLYYLTADDLS------QLDHFKEKSINNLLAAIDQSRKNSVEL 506 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGI +VG + A+ +A+ + + A L + +G IA+++ Sbjct: 507 VLFGLGIDNVGGKAAQLIAQKFKNMSKIASA----------SVQELTAIDTIGMTIAESL 556 Query: 613 VEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++Q + L + G + + + K +V TG L R + + + Sbjct: 557 TAYFQQEEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAEFTKKL 616 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 LGA V+ +S+KTD ++ G++ GSKL KA+ L + + E + + +++ +T Sbjct: 617 QALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDTE 670 >gi|332686164|ref|YP_004455938.1| DNA ligase [Melissococcus plutonius ATCC 35311] gi|332370173|dbj|BAK21129.1| DNA ligase [Melissococcus plutonius ATCC 35311] Length = 678 Score = 512 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 238/719 (33%), Positives = 384/719 (53%), Gaps = 52/719 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L++ +A L+++++ + YY KP + D YD L + I A+PDL S Sbjct: 7 LTLTEATDRADELKEQLNQYSYEYYVQDKPSVEDYVYDRLYKELSEIETAYPDLITS--- 63 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ KV H SL ++ ED+ F RI+R D + E Sbjct: 64 DSPTQRVGGKILPGFEKVHHDSTMYSLNDGFSKEDIYNFDERIHRL----TDQPFTYCCE 119 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++RY+ G+ V A RGDG GE+++ ++ + +IP L+ +I IEVRGE Sbjct: 120 LKIDGLAISLRYKNGELVLGATRGDGTIGENITENLKTVRSIPLRLNKSIS--IEVRGEC 177 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN E G +ANPRNAA+G LR+L+ R LN F++ + + Sbjct: 178 YMPKTSFVRLNQEREEEGCDIFANPRNAAAGSLRQLDSRITAKRNLNTFLYTVADFGSMT 237 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 AK Q++ L ++ +G N R T + S+ E R+ LPY+IDG+V KV+EFS Sbjct: 238 AKNQFDALNELTTIGIRTNPEKRLCQTIDEVWSFIEEYHEKRNELPYEIDGIVIKVNEFS 297 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q +LG ++PRW I++KF ++A T + +I+ +GRTG++TP A ++PV I G ++ Sbjct: 298 EQNKLGFTVKAPRWAIAYKFPPEEARTTVNEIEWTVGRTGVVTPTAIMDPVRIAGTTVSR 357 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D+I+ +DIR+ D V++ +AG++IP+V +V R ++ P+ Sbjct: 358 ASLHNFDFIQM-----------KDIRLKDEVIIYKAGDIIPEVAKALVETRTNESVPYQA 406 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+CQS +V A RC C AQ E L HFVSR+A NI GLG + Sbjct: 407 PSHCPVCQSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIAGLGPRI 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L ++ + ++ AD++ + Q + + + S N+Y +I +N S+ Sbjct: 460 LAQLYEKK----LVKDVADLYFVTEEQLMT------LEKIKEKSANNIYQAIAASKNNSV 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E IF LGIRHVGA+ A+ LA+++ + +Q + S++ + +G+IIA+ Sbjct: 510 EHLIFGLGIRHVGAKAAKILAEHFGDLKTLSQA----------NQESIMVLDSIGEIIAE 559 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG----RHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++V +++ + L K + N S +NK +V TG L R +A Sbjct: 560 SVVAYFEKIEVQELLVELEKAGINFKYTGTRPEQLNGDSFFKNKTVVLTGKLTNYTREEA 619 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 +E + LG V+ +S+KTDI+I G+ GSKL A++L V + +E Q L+ ++ T+ Sbjct: 620 KEQIESLGGNVTNSVSKKTDIVIAGEASGSKLAAAKELEVTVWDENQLTEALENHHPTV 678 >gi|228476354|ref|ZP_04061055.1| DNA ligase, NAD-dependent [Staphylococcus hominis SK119] gi|228269637|gb|EEK11143.1| DNA ligase, NAD-dependent [Staphylococcus hominis SK119] Length = 667 Score = 512 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 242/712 (33%), Positives = 379/712 (53%), Gaps = 53/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + ++ L ++ + YY P + DSEYD L R I +A P+L + Sbjct: 1 MDNIQNRVNELHDLLNQYSYEYYVKDNPSVPDSEYDKLLRELIDIENAHPELKTD---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N E+LR+F RI ++ + E K Sbjct: 58 PTVRVGGEAQSSFEKVNHETPMLSLGNAFNEEELRRFDERIREHIG-----NVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++YE G+FV RGDG +GED++ +R I IP + + +EVRGE Y+ Sbjct: 113 IDGLAVSLKYEDGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLN--VEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + F+ LNDE +P+ANPRNAA+G LR+L+P R L+ F++ + ++ A Sbjct: 171 PRRSFMRLNDEREKNEEQPFANPRNAAAGSLRQLDPKLAAKRKLSVFLYSVNDFTDFSAT 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q + L ++ LGF N+ + G++ Y + R L YDIDG+V KV++ Q Sbjct: 231 TQSDALDELDRLGFKTNHERARVEDIEGVLEYIKKWTKQREQLSYDIDGIVIKVNDLDQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++G +SPRW I++KF ++ T L DI++ IGRTG++TP A LEP+ + G ++ A+ Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTELKDIELSIGRTGVVTPTAILEPIRVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED IK RDIR+GD V+VK+AG++IP+VV I++ R DA+P+ P+ Sbjct: 351 LHNEDLIK-----------ERDIRIGDSVIVKKAGDIIPEVVRSIIDRRPNDAKPYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGNKIIQ 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + + I+ DIF L + + G V NL +I + SLE Sbjct: 453 QLYHHQ----LIKDVGDIFYLTKEDL------LPLERMGTKKVENLLSAIEHAKQNSLEH 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+GA+ ++ LA+ + + + L+ + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGAKASQILAEKFETMDRLLKVTE----------EELVAIHDIGDKLAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668 V + N +E L + I + K+ E +NK +V TG LQ++ R +A Sbjct: 553 VTYLDNEDIKALIEKLKDKNVNMIYKGVKSSEIEGHPEFQNKTIVLTGKLQQMTRKEATT 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ GA V++ +++ TD++I G++ GSKL KA+Q G +I +E QF+ + Sbjct: 613 WLEMQGAKVTSSVTKSTDLVIAGEDAGSKLSKAEQFGTEIWSESQFIEKQNE 664 >gi|260102794|ref|ZP_05753031.1| DNA ligase [Lactobacillus helveticus DSM 20075] gi|260083398|gb|EEW67518.1| DNA ligase [Lactobacillus helveticus DSM 20075] Length = 689 Score = 512 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 215/720 (29%), Positives = 369/720 (51%), Gaps = 51/720 (7%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 Q + + +++++A+KE +SL ++ D YY P + D+ YD R + AFP Sbjct: 17 NQEVKMAKITLDEAKKEAASLRTKLDEWADAYYSKDAPEVEDNVYDQSYNRLLELEKAFP 76 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 ++ P+ ++GGE++ KV H IP LS+ +++ ++L++F R+ + Sbjct: 77 EIV---TPDSITQRVGGEIDSDFTKVNHPIPMLSMGDVFSKDELKEFDQRMQKLVG---- 129 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 + + + +E KIDG +++ Y+ GK V A+ RG+G+ GEDV+A R I IP+VL + Sbjct: 130 HPVEYNVELKIDGLSLSLEYQDGKLVRASTRGNGYIGEDVTANARYIADIPQVLPEPL-- 187 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243 IEVRGE Y+ K F LN E G +ANPRNAA+G LR+L+P + Sbjct: 188 TIEVRGECYMGKEAFAKLNQEREDEGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYT 247 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 Q++ +++M LGF N R+ + + +E + R++L Y IDG+V Sbjct: 248 WVNPPREITSQHQAIERMHELGFHTNETGRKLANLDEVFDFIDEYTAKRNSLTYGIDGIV 307 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KVD+ SL++QLG + PRW I++KF ++ T + DI +GRTG++TP A ++PV + Sbjct: 308 LKVDDLSLEQQLGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQL 367 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G + A+LHN DY+ + +R+GD V + +AG++IP++ ++++++R Sbjct: 368 AGTTVARASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVLSKRPA 416 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 D+ P+ P+ CP C ++V + A RC +C AQ E + HF SR A NI Sbjct: 417 DSVPYEIPTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGIIHFASRPAMNI 469 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 GLG + + + + AD++ L + F + S+ NL +I+ Sbjct: 470 AGLGPKIVKQLIAKD----LVHNVADLYHLTEDDL------AQLDHFKEKSINNLLTAID 519 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + S+E I LGI HVGA+ AR +A+ + + + + + Sbjct: 520 NSKKNSVELLITGLGIDHVGAKAARLIAQKFKNLEKIMSL----------GVQDIASIDT 569 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI----GRHEKNVSSEIENKKLVFTGTLQ 659 +G A+++ ++ P +E L + E+ + ++K +V TG L+ Sbjct: 570 IGMTTAESMTTYFAQPEAQKLIEELRESGLNMDYLGADEPEEAPDNPFKDKTVVLTGKLE 629 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R + + + LGA V+ +S KTD +I G + GSK KA+QLGV ++ EE+ + ++ Sbjct: 630 HYTRSEFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYNKAEQLGVPLLTEEEAIAQIE 689 >gi|89891625|ref|ZP_01203129.1| DNA ligase [Flavobacteria bacterium BBFL7] gi|89516172|gb|EAS18835.1| DNA ligase [Flavobacteria bacterium BBFL7] Length = 684 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 224/716 (31%), Positives = 361/716 (50%), Gaps = 50/716 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ SL E+ H+ YY P I D E+D + + A P+ D P + Sbjct: 4 KEQIQSLRDELREHNYNYYVNDNPTISDFEFDKKLEQLKTLEAAHPEF---YDATSPSVR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ + + H SL+ ++IEDLR + RI + D I +T E K DG Sbjct: 61 VGGEVTKNFNTIKHINRMYSLDNSYSIEDLRDWEKRIKKIV----DGEIQYTCELKYDGA 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKN 196 I++ YE GKFV A RGDG+ G++V+A +R I ++P L + P E+RGE+ + + Sbjct: 117 SISLHYENGKFVQAVTRGDGNQGDEVTANVRTIKSVPLQLKGDDVPAKFEIRGEIVLPWD 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N+E G Y NPRN ASG L+ + ++ + + + K Q++ Sbjct: 177 GFHKMNEERADQGLDLYRNPRNTASGSLKLQDSAEVAKRPLDCLLYQLAGENLPVKSQFD 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L R GF + ++ + + N R LPY+ DG+V KV+ Q +LG Sbjct: 237 SLTLARKWGFKAPQESKLVHSIEEVFEFINHWDVARKELPYETDGVVIKVNSLDQQDELG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A++P+W +++KFA +Q STRL +I Q+GRTG +TPVA LEPV I G + A+LHN Sbjct: 297 FTAKAPKWAMAYKFAAEQVSTRLEEITYQVGRTGSITPVANLEPVEISGTTVRRASLHNA 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L DIRVGD V V++ GE+IPK+V + + +R ++ P + + CP Sbjct: 357 DQIEKL-----------DIRVGDEVYVEKGGEIIPKIVAVELTKRPDNSTPTVYATHCPE 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + +VR A H C +AC Q R++HF+SR A +I+G+G + + Sbjct: 406 CHTELVRTEG------DAKHYCPNDMACPPQVKGRIEHFISRKAMDIDGIGAETVGQLVD 459 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 A I AD++ L Q + + S N+ + I + + ER +F Sbjct: 460 ----AGFINNYADLYDLTVEQ------VLPLERMAQKSAENMINGIEASKQVPFERVLFG 509 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFA-----------QEINNIIAHNNDDWLSLIRVPLVG 605 LGIR+VG +A+ LAK+Y + ++ + + L VP +G Sbjct: 510 LGIRYVGETVAKKLAKHYKNVDALLNMPAEPDKSSIDLFADVSSAADKKMEELTAVPEIG 569 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQR 663 + IAQ++VEF QN + +E L + + ++ K V +G + + R Sbjct: 570 ESIAQSLVEFIQNEDQMAIIERLKNTGLQFALSEEQLEGQTDKLAGKSFVISGVFE-MSR 628 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + ++ V G S+ +S KTD +I GD G SKLEKA++LG+ +++E++FL ++ Sbjct: 629 NDLKKLVEDNGGKNSSSISSKTDYLIRGDKMGPSKLEKAEKLGITMISEQEFLAMI 684 >gi|331702040|ref|YP_004398999.1| DNA ligase [Lactobacillus buchneri NRRL B-30929] gi|329129383|gb|AEB73936.1| DNA ligase [Lactobacillus buchneri NRRL B-30929] Length = 675 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 235/711 (33%), Positives = 377/711 (53%), Gaps = 53/711 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E +S +QA + L ++++ D YY Y P + D+ YD ++ A+ + FP + Sbjct: 4 ENMSEQQAAAKAGDLRKQLNQWADEYYTYDAPSVEDAVYDQTYQQLVALENQFPQIV--- 60 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P K+G KV H IP LSL +++ E+L +F+ R + D + + Sbjct: 61 TPDSPTQKVGDHTLPGFTKVNHEIPMLSLGDVFSKEELAEFVDR----LSENDSVAFDYN 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG I +RYE G FV + RG+G GED++ ++ I +IP L P IEVRG Sbjct: 117 CELKIDGLAINLRYENGVFVQGSTRGNGQIGEDITRNLKTIKSIP--QKLTRPINIEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 E Y+ K F LN++ G +P+ANPRNAA+G LR+L+P +R L+ F++ + + Sbjct: 175 ECYMPKESFAKLNEQRQLDGEEPFANPRNAAAGSLRQLDPRVTRSRKLSTFMYNVADIDD 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + Q ML +++ LGF +N + A+ I +Y ++ K +R LPY IDG+V KV+ Sbjct: 235 LQSDTQSGMLAELKELGFTINPDFKVAHNMADIDNYVDKYKDLRDGLPYGIDGIVIKVNS 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 LQ+ LG + PRW I++KF ++ T + DI+ +GRTG++TP A ++PV + G+ + Sbjct: 295 LPLQRSLGATVKVPRWAIAYKFPPEEVQTIVRDIEWTVGRTGVVTPTAVMDPVTLAGSTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN DY+ +DIRVGD V + +AG++IP++ + ++R ++Q + Sbjct: 355 SRASLHNPDYL-----------AEKDIRVGDTVKLHKAGDIIPEISQYLPDKRPANSQAY 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C S +V A RC C AQ E L HF SRDA NI+GLG Sbjct: 404 EIPTQCPSCGSTLVHLDQE------VALRCINPQ-CPAQLKEGLTHFASRDAMNIDGLGP 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + F+ + A ++ L Q + + FG+ S T L +I+ R+ Sbjct: 457 KIIAQLFEK----HMVSDVAGLYDLSFDQLLT------LDKFGEKSATKLLAAIDNSRSN 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S ER ++ LGIRHVG + AR +A+ + + Q + + +G II Sbjct: 507 SCERLLYGLGIRHVGIKAARLIAQRFKNIDKVMQA----------SAQDIAEIATMGMII 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI-----GRHEKNVSSEIENKKLVFTGTLQKIQR 663 A ++V ++ P + ++ L + S KK V TG LQ I R Sbjct: 557 ADSVVTYFSMPESKQLIDQLKQVGVNMDYLGVTDEQLAESDSFFTGKKFVLTGKLQNITR 616 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 A +++ GA VS+ +S+ TDI++VG++PGSK +KA+ LG++ +E +F Sbjct: 617 PDATQWLEDHGAKVSSSVSKNTDIVVVGEDPGSKYDKAKSLGIQTWDEARF 667 >gi|224543223|ref|ZP_03683762.1| hypothetical protein CATMIT_02423 [Catenibacterium mitsuokai DSM 15897] gi|224523856|gb|EEF92961.1| hypothetical protein CATMIT_02423 [Catenibacterium mitsuokai DSM 15897] Length = 664 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 237/710 (33%), Positives = 380/710 (53%), Gaps = 52/710 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + +S E L+ L+ ++ ++ YY P + D EYD L I P + Sbjct: 1 MSKMSFE----RLNELKALLNKYNYEYYVQDNPTVSDQEYDRLMEELIRIEQVNPAWITT 56 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P ++GGE+ KVTH +SL I+N +++ F R+ + + Sbjct: 57 ---DSPSQRVGGEVLEGFKKVTHQRMMMSLGDIFNEDEVYTFNDRVTDVI-----PNPEY 108 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 E K+DG +++ Y+ G Y A RG+G GED++ ++ I +IP L ++ +EVR Sbjct: 109 ICELKLDGLSVSLVYQDGVLQYGATRGNGTVGEDITHNVKTIRSIP--LHIDFKGPLEVR 166 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTS 247 GE+ + K LN+E G +AN RNAA+G +R+L+ + L+ F++ + + S Sbjct: 167 GEIIMPKKALERLNEERTDAGLPLFANCRNAAAGSIRQLDSRVAAKRGLDAFLYHVPEAS 226 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 ++ A YE L+K++ LGF N R+ T + +Y E+ +R TLPYDIDG+V KV+ Sbjct: 227 QLNASTHYECLEKIKDLGFKTNPYTRKCKTIQEVWNYIEEVAKLRPTLPYDIDGVVIKVN 286 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + Q++LG A+ P+W I++KF ++ T+L DI IGRTG +TP A LEPV + G+L Sbjct: 287 DLDSQRKLGYTAKVPKWAIAYKFPAEEVITKLKDIIFTIGRTGQITPNAVLEPVRVAGSL 346 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATLHNED +DIR+GD V+V++AG+VIP+VV I R P Sbjct: 347 VQRATLHNEDNCIR-----------KDIRIGDDVIVRKAGDVIPEVVSAIKERRTGHEIP 395 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F + CP C S +VR N AA+ C C ++++E+L HF SR+A NI+GLG Sbjct: 396 FKMITVCPKCGSLLVRKPNE------AAYYCVN-EECDSKKIEKLIHFASREAMNIDGLG 448 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ F+ + DI+ L ++ +I +I GFG S+ L ++I + Sbjct: 449 DKIIEQFYN----LGFVTCIEDIYHLGVHEK----EIMDIEGFGKKSMDKLLEAIENSKV 500 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SLE+ +F LGI+ +GA++A +LA ++ S +++ L + VGD Sbjct: 501 NSLEKLLFGLGIKGIGAKMADTLAYHFGSMDALLNA----------NYVQLTSIKDVGDT 550 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 IA ++ F +N RN+ + L + + + + +K +V TGTL + R + Sbjct: 551 IASSLAAFKRNERNLELIAHLKELGLNMDYLKVRQEGDNPFRDKTVVITGTLTLMTRKQI 610 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 ++Y+T GA V+ +S+KTD++IVG+NPGSK KA LG+ IMNE F Sbjct: 611 KDYLTSQGANVTGSVSKKTDLVIVGENPGSKYTKAVDLGISIMNESAFKE 660 >gi|326776439|ref|ZP_08235704.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1] gi|326656772|gb|EGE41618.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1] Length = 743 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 209/736 (28%), Positives = 350/736 (47%), Gaps = 61/736 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 R++ + L ++I H YY +P++ D+++D R +A+ P L P+ Sbjct: 14 PADVREKHALLAEQIEEHRFRYYVKDQPVVSDADFDRQLRSLEALEEEHPSL---RTPDS 70 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+ G V H LSL+ ++ E+L + R+ + D + F E K Sbjct: 71 PTQKVAGPYRTEFTSVEHRERMLSLDNAFDDEELAAWADRVAKDVGTPDHH---FLCELK 127 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG + + YE G+ AA RGDG +GED++ +R I IP L P ++E+RGEV+ Sbjct: 128 VDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLKGEDIPALVEIRGEVF 187 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 DF LN ++A KP+ANPRNAA+G LR+ +P TR L+ VHG+G + Sbjct: 188 FPMEDFEELNARLVAADDKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAHEGLSI 247 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + G P + ++ G+ + R ++ ++IDG+V K+DE L Sbjct: 248 DRLSAAYDLLHAWGLPTARHNKVVDSLAGVREFIAHYGENRHSVEHEIDGVVVKLDEIPL 307 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ + A Sbjct: 308 QGRLGSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVEVAGSEVEFA 367 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN++ +K + + +GD V++++AGEVIP+++ +V+ R + F P Sbjct: 368 TLHNQNVVK-----------AKGVLIGDTVVIRKAGEVIPEILGPVVDLRDGTEKAFEMP 416 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C + + + RC C AQ ER+ + R + +I+ G Sbjct: 417 THCPECGTELRPM-----KEADIDLRCPNARTCPAQLRERVFYLAGRKSLDIDHFGYVAA 471 Query: 492 DFFFKSEDPAFSI-RIPADIFTLQRRQQTSTTKI------------------------EN 526 + +PA + + +D+F+L Q N Sbjct: 472 AALTRPLEPAEPVLKDESDLFSLTVEQLLPIRAYVLDQDSGLPKRDPKTGEEKIATVFAN 531 Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 G + + + I ++ L R + L IRHVG A+ LA+ + S + + Sbjct: 532 QQGEPKKNAVAMLEGIAAAKDAPLARVLTGLSIRHVGPVAAQELARQFRSIERIDEATEE 591 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVS 644 +A VG IA ++ +++ + V + E Sbjct: 592 ELAAA----------DGVGPTIAASVKQWFAEDWHREIVRKWREAGVRMADEGSDEDEGP 641 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 +E +V TGTL R A+E + LGA V+ +S+KT ++VGDNPGSK +KA QL Sbjct: 642 RPLEGLTVVVTGTLAGHTRDGAKEALQALGAKVAGSVSKKTAFVVVGDNPGSKYDKAMQL 701 Query: 705 GVKIMNEEQFLFLLQQ 720 V +++E+ F LL+Q Sbjct: 702 KVPVLDEDGFAILLEQ 717 >gi|306819948|ref|ZP_07453599.1| NAD-dependent DNA ligase LigA [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551984|gb|EFM39924.1| NAD-dependent DNA ligase LigA [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 675 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 226/706 (32%), Positives = 385/706 (54%), Gaps = 48/706 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 SI++AR ++ L+ EI ++ YY+ P+I D +YD + R+ ++ +P+L P+ Sbjct: 3 SIDEARVKIEELKAEIEKNNKLYYEDDNPVISDYDYDMMMRQLISLEEKYPELK---TPD 59 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P N++GG+ ++ H +SL + +LR F ++I + + + +E Sbjct: 60 SPSNRVGGKALSKFEQIRHDRVMMSLSNAFTAGELRDFDSKIKEY-----TKNPKYVVEF 114 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG + ++YEKG + A RGDG +GE+V+ + I +IP L + +EVRGE + Sbjct: 115 KIDGLTLVLKYEKGILISAGTRGDGVTGENVTQNAKTIKSIPLKLKEEV--DVEVRGEAF 172 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 I K F A+N+ I K +ANPRN A+G LR+L+P + Sbjct: 173 IPKEVFYAINEMQIENDEKTFANPRNMAAGSLRQLDPKITASRKLDIFIFSVENDIEGKN 232 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 +E+L ++ LG ++ + N +++ + R LP++IDG+V K+D+ +L+ Sbjct: 233 SHFELLDYVKDLGMKISPEKKLCNDIEEVIAEIEKWTDKRFDLPFEIDGMVVKLDDIALR 292 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++G +++P+W I++KF ++ T++ DI +Q+GRTG+LTP A L+ V I G++++ AT Sbjct: 293 DEIGSTSKAPKWAIAYKFPPEKVRTKVEDIIVQVGRTGVLTPTAILDTVRISGSMVSRAT 352 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNEDYIK +DI++GD V +++AGE+IP+V ++ N R + + F P Sbjct: 353 LHNEDYIK-----------EKDIKIGDYVYIQKAGEIIPEVYEVDKNARTGEEREFEMPH 401 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C + VR N A ++C AQ ++ HFVS+ A +I+G G++ + Sbjct: 402 NCPVCGEKTVRFENE-------ASWKCTNISCKAQLQRKIIHFVSKGAMDIDGFGEKIVI 454 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F+ I+ +DI+TL+ ++N+ G+ S NL ++I +N+SL++ Sbjct: 455 QLFEE----GLIKDISDIYTLKAD------VLKNLERMGEKSANNLINAIENSKNVSLDK 504 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LGIR +GA + LAK + + + L + +G+ +A +I Sbjct: 505 FIFALGIRFIGANAGKVLAKNFDNIGQLMES----------SVDRLTAIDEIGEKMAMSI 554 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 VEF++ N VE LL I + + S N K+V TGTL+K +R Q+ V + Sbjct: 555 VEFFEIQSNRDLVEKLLALGVNPISKSNSSQKSIFLNLKVVATGTLEKFKRDDIQKIVEE 614 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G +S+ +S+KT+ ++ G+ GSKL+KA QLGVK+++E F LL Sbjct: 615 NGGKLSSSVSKKTNFVVAGEAAGSKLDKANQLGVKVISENDFEKLL 660 >gi|291538763|emb|CBL11874.1| DNA ligase, NAD-dependent [Roseburia intestinalis XB6B4] Length = 671 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 207/710 (29%), Positives = 357/710 (50%), Gaps = 50/710 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E+ ++ L +I+YH D YY P I D E+D L ++ + P+L Sbjct: 1 MTPEE---QIKELRDKINYHSDRYYNQDSPEISDYEFDMLMQQLKKLEKEHPELV---TK 54 Query: 72 NGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P +GG + V H++P LSL+ +++ E++ F+ ++ + F + Sbjct: 55 DSPTQHVGGTAKRTAGVLVHHNVPMLSLQDVFSKEEVVDFVEQMKEQL-----DDPEFVV 109 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG + +RYE G A RGDG + GEDV+A + I + + L PE +E+RG Sbjct: 110 EYKIDGLSMALRYENGDLSLALTRGDGVNFGEDVTANAKVISDVKKKLKDK-PEYLEIRG 168 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EVY+ DF +N++ +G+K +ANPRN A+G LR+L+ R L+ FV + + Sbjct: 169 EVYMKNEDFDRVNEQQELLGKKIFANPRNCAAGTLRQLDSRVTKERKLSMFVFNIQQVRG 228 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + + ++ G P+ + T + + + R L YDIDG V K++ Sbjct: 229 MDIMTHTQGYEFLKRQGIPIIEDYKVCKTADEVWNAITAIGENRGNLGYDIDGAVIKINR 288 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +S ++ LG ++ P+W I++K+ ++ T+LLDI++ +GRTG +TP A EPV + G + Sbjct: 289 YSDRELLGNTSKVPKWAIAYKYPPEEKETKLLDIELSVGRTGRITPTAVFEPVRLCGTSV 348 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHN+D+I L D+ +GD ++V ++GE+IPKV ++ +R + F Sbjct: 349 SRATLHNQDFIDDL-----------DVGIGDTIVVYKSGEIIPKVKEVRKEKRPDGWKRF 397 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP+C ++ R+ + A +CT C AQ + +FV RDA +I+G G Sbjct: 398 MIPDVCPVCGAKTEREKD------TADIKCTSP-NCPAQLERHIINFVGRDAMDIKGFGT 450 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 ++ + I+ ADIF L+ ++ + + + L ++I K + Sbjct: 451 VYIEELVR----LGYIKDIADIFELKDHREELIEQGII---GKEKNTDKLLETIEKAKEN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + GI +VG A+++ K + S + D +L+ V VG++ Sbjct: 504 DAYMLLTGFGIPNVGKAAAKTIMKRFSSILDLENA----------DRDALMEVDDVGEVS 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A I F+ + +N + L + + S + K +V TGTL + R +A E Sbjct: 554 ADCIFRFFHDEKNKEMIARLKSLGVNMEAEETETIDSAVSGKTVVITGTLPTLGRKEAAE 613 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 V + G VS +S+KTD ++ G++ GSKL KAQ+LG+ ++ E + LL Sbjct: 614 LVEKYGGKVSGSVSKKTDYVVAGESAGSKLTKAQELGITVLTEAELFVLL 663 >gi|182435814|ref|YP_001823533.1| NAD-dependent DNA ligase LigA [Streptomyces griseus subsp. griseus NBRC 13350] gi|254778153|sp|B1VZW1|DNLJ2_STRGG RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 2 gi|178464330|dbj|BAG18850.1| putative DNA ligase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 743 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 209/736 (28%), Positives = 350/736 (47%), Gaps = 61/736 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 R++ + L ++I H YY +P++ D+++D R +A+ P L P+ Sbjct: 14 PADVREKHALLAEQIEEHRFRYYVKDQPVVSDADFDRQLRSLEALEEEHPSL---RTPDS 70 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+ G V H LSL+ ++ E+L + R+ + D + F E K Sbjct: 71 PTQKVAGPYRTEFTSVEHRERMLSLDNAFDDEELAAWADRVAKDVGTPDHH---FLCELK 127 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG + + YE G+ AA RGDG +GED++ +R I IP L P ++E+RGEV+ Sbjct: 128 VDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLKGEDIPALVEIRGEVF 187 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 DF LN ++A KP+ANPRNAA+G LR+ +P TR L+ VHG+G + Sbjct: 188 FPMEDFEELNARLVAADDKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAHEGLSI 247 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + G P + ++ G+ + R ++ ++IDG+V K+DE L Sbjct: 248 DRLSAAYDLLHTWGLPTARHNKVVDSLAGVREFIAHYGENRHSVEHEIDGVVVKLDEIPL 307 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ + A Sbjct: 308 QGRLGSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVEVAGSEVEFA 367 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN++ +K + + +GD V++++AGEVIP+++ +V+ R + F P Sbjct: 368 TLHNQNVVK-----------AKGVLIGDTVVIRKAGEVIPEILGPVVDLRDGTEKAFEMP 416 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C + + + RC C AQ ER+ + R + +I+ G Sbjct: 417 THCPECGTELRPM-----KEADIDLRCPNARTCPAQLRERVFYLAGRKSLDIDHFGYVAA 471 Query: 492 DFFFKSEDPAFSI-RIPADIFTLQRRQQTSTTKI------------------------EN 526 + +PA + + +D+F+L Q N Sbjct: 472 AALTRPLEPAEPVLKDESDLFSLTVEQLLPIRAYVLDQDSGLPKRDPKTGEEKIATVFAN 531 Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 G + + + I ++ L R + L IRHVG A+ LA+ + S + + Sbjct: 532 QQGEPKKNAVAMLEGIAAAKDAPLARVLTGLSIRHVGPVAAQELARQFRSIERIDEATEE 591 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVS 644 +A VG IA ++ +++ + V + E Sbjct: 592 ELAAA----------DGVGPTIAASVKQWFAEDWHREIVRKWREAGVRMADEGSDEDEGP 641 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 +E +V TGTL R A+E + LGA V+ +S+KT ++VGDNPGSK +KA QL Sbjct: 642 RPLEGLTVVVTGTLAGHTRDGAKEALQALGAKVAGSVSKKTAFVVVGDNPGSKYDKAMQL 701 Query: 705 GVKIMNEEQFLFLLQQ 720 V +++E+ F LL+Q Sbjct: 702 KVPVLDEDGFAILLEQ 717 >gi|78357136|ref|YP_388585.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123768784|sp|Q30ZK6|DNLJ_DESDG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|78219541|gb|ABB38890.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 705 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 238/724 (32%), Positives = 386/724 (53%), Gaps = 56/724 (7%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 R+ P++ + + + L + YH YY +P I D+EYDAL R + P Sbjct: 3 RRGAPVKQ-DSAKVEQRMEELRTLLEYHGHRYYVMDEPEISDAEYDALFRELVRLEEEHP 61 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 + P P +K+GG++ L HS+ SL+ + IE+ R+F+ R+ R + D Sbjct: 62 EHIH---PGSPTHKVGGQILDGLKPREHSLRMYSLDNAFGIEEFREFVERVVR---LEPD 115 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 + F ++PK+DG + + YE G F+ A RGDG GEDV+ +R + + L+ I Sbjct: 116 APLEFWVDPKMDGLAMELVYENGVFLLAVTRGDGSMGEDVTHTMRTVRNVRMRLNPEIEA 175 Query: 184 --IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFV 240 +EVRGEV I++ DF ALN G K +ANPRNAA+G +R+L+ + F Sbjct: 176 PVRLEVRGEVIITRADFEALNARQQQKGGKLFANPRNAAAGSVRQLDSSVAAARPLRFMA 235 Query: 241 HGLGKTSE----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296 +G+G+ + QY++++ ++ LGF V + R + + + E+ + R LP Sbjct: 236 YGVGQVVWADGRQRWRTQYDIMRGLQELGFAVPSQGRLCAAPADVEAAFTELSAARHELP 295 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 ++IDG+V K+++ LQ+ LG AR+PRW I+ KF QA TRL DI IQ+GRTG++TPVA Sbjct: 296 FEIDGVVAKLNDLDLQEALGFTARAPRWAIALKFPAHQARTRLKDIRIQVGRTGVMTPVA 355 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 LEPV +GG +++ATLHNED I+ + + +GD V+V+RAG+VIP+VV Sbjct: 356 ELEPVTVGGVTVSSATLHNEDEIR-----------AKGLMLGDVVIVQRAGDVIPEVVRA 404 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 + ER + + FP+ CP+C S VR AA RCT C A + + + HFV Sbjct: 405 VPEERTGAEREYVFPAVCPVCGSAAVRGEGE------AAWRCTNMQ-CPAVRKQAIIHFV 457 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 S+ +I+G+G++ ++ S + PAD+F + R G+ + Sbjct: 458 SKAGLDIDGVGRKWIEQLVDS----GRVVSPADLFRITREDLLGM------ERMGEKLAS 507 Query: 537 NLYDSINKRRNISL-ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 N ++ + R+ S +RFI +LGIRHVG + AR+LA + + + D Sbjct: 508 NFIEAFDSARHESTLQRFICALGIRHVGEQTARTLAARFGNMDELMRA----------DQ 557 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKL 652 +L + +G +A +I F+ N +N ++ + S+ + KK+ Sbjct: 558 ETLQSLRDIGGEVAGSIRAFFANGQNRELLQQFKNLGLWPEEQQPAGDSTPVTPLAGKKI 617 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 +FTG+L ++ R +A+ + GA V + +S + DI++ GD PGSKLEKA+ LG+ ++ E+ Sbjct: 618 LFTGSLVRMTRSEAKAMAEKAGAAVMSGVSARLDILVAGDKPGSKLEKARSLGITVLTED 677 Query: 713 QFLF 716 +F+ Sbjct: 678 EFIR 681 >gi|81429164|ref|YP_396165.1| NAD-dependent DNA ligase [Lactobacillus sakei subsp. sakei 23K] gi|123755813|sp|Q38VC5|DNLJ_LACSS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|78610807|emb|CAI55858.1| NAD-dependent DNA ligase [Lactobacillus sakei subsp. sakei 23K] Length = 677 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 230/718 (32%), Positives = 371/718 (51%), Gaps = 53/718 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +E + +A L +++ + YY P++ D YD L R + + AFP + + Sbjct: 7 VEDYTQSEAASLAQQLRDQLADYSQAYYTQDAPLVEDHVYDELYRDLEQLEAAFPVIVTN 66 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P K+GG++ KVTH IP LS+ +++ +L F R+ + I + Sbjct: 67 ---DSPTQKVGGQVLPGFTKVTHEIPMLSMGDVFSEAELAAFDQRLRK----NTATEIEY 119 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG I + YEKG+FV A RG+G GED++ ++ I IP+ L+ + IEVR Sbjct: 120 NVELKIDGLAIDLIYEKGRFVRGATRGNGTIGEDITQNLKTIKAIPQKLTRPVS--IEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247 GE Y+ K F LN + A G+ P+ANPRNAA+G LR+L+ R L+ F++ + Sbjct: 178 GECYMPKAAFADLNQKREAEGQAPFANPRNAAAGSLRQLDAKVAAARQLSAFIYTIVTFD 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 ++ A Q E L + LGF VN + ++ + + R+ L Y IDG+V KV+ Sbjct: 238 DVQATTQSEALHVLAELGFNVNPTSVVCQNMAEVQAFIEQYQGTRNDLAYGIDGVVLKVN 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQ+QLG + PRW I++KF ++A T + +I+ +GRTG++TP A ++PV + G Sbjct: 298 DLALQRQLGNTVKVPRWEIAYKFPPEEAETVIREIEWTVGRTGVVTPTAVMDPVQLAGTT 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + A+LHN D ++ +D+R+ D VL+ +AG++IP++ +++ +R D+Q Sbjct: 358 VARASLHNADMLR-----------DKDVRLLDTVLLHKAGDIIPEISQVVLAKRPSDSQA 406 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + P+ CP C +V A RC + C AQ E+L HF SR+A NI+GLG Sbjct: 407 YGIPTTCPSCGHDLVHLDEE------VALRCINPM-CPAQMKEQLTHFASRNAMNIDGLG 459 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + + + E I AD++ L + F + S+ NL ++I+ R Sbjct: 460 PRIITQLLEKE----LIHDVADLYRLTADDL------AQLDKFKEKSINNLLNAIDASRQ 509 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SLER +F LGIRHVGA+ AR LA+++ + D ++I V +G I Sbjct: 510 NSLERLLFGLGIRHVGAKAARLLAEHFQNLAALMAS----------DQETIITVDTIGTI 559 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP-----SIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 IA ++V ++ + + + L S K +V TG L++ Sbjct: 560 IADSLVTYFADSQVQTLMAELEAVGVNLTYTGVTKAQAATSDSYFNGKTVVLTGKLEQYT 619 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R + ++ + GA V+ +S+KTD +I G + GSKLEKAQ L + I+NE L Q Sbjct: 620 RGELKQLLEDNGAKVTGSVSKKTDALIAGQDAGSKLEKAQSLAIPIINEADLDNYLAQ 677 >gi|294506892|ref|YP_003570950.1| NAD-dependent DNA ligase [Salinibacter ruber M8] gi|294343220|emb|CBH23998.1| NAD-dependent DNA ligase [Salinibacter ruber M8] Length = 691 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 221/703 (31%), Positives = 372/703 (52%), Gaps = 49/703 (6%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 + +H+ YY P++ D+EYD L ++ + +P L + P+ P +++GG + L Sbjct: 32 LRHHNYRYYVLDAPVVSDAEYDRLFQQLQTLEAEYPGL---QTPDSPTHQVGGPVRDELG 88 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 VTH P LSL+ ++ +++R F + ++ ++ +T EPK DG + + YE G+ Sbjct: 89 TVTHPAPMLSLKAVYEEDEVRNFAETCRKELGRE---TVTYTAEPKFDGLAVELIYEDGR 145 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGEVYISKNDFLALNDE 204 V A RGDG +GE+++A ++ I +P L +P+ + VRGE Y+ K++F A N Sbjct: 146 LVQGATRGDGETGEEITANVKTIKGVPLRLRDDARPVPDRLVVRGEAYMRKDEFNAFNRR 205 Query: 205 MIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263 G+K +ANPRNAA+G LR+L+ R L + + + E+L+ + Sbjct: 206 REEEGKKVFANPRNAAAGSLRQLDSNITARRPLRIYFYEIAPVDGRDFATHAEVLEALPE 265 Query: 264 LGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322 G + +R+ + ++++ + R LPY+IDGLV KV++F + LG R R P Sbjct: 266 WGLRVCEDHIRRCDGIDAALAHHAALVDRRDDLPYEIDGLVIKVNDFDGHETLGVRDRDP 325 Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382 RW ++KF ++A+T + D+ +Q+GRTG +TPVA L PV +GG +T A+LHN++ I Sbjct: 326 RWAAAYKFPPRRATTSIEDLFVQVGRTGRITPVAVLAPVEVGGVEVTRASLHNQNEIDR- 384 Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442 +DIR+GD VL++RAG+VIP+VV +I +ER P+ P CP+C S VV Sbjct: 385 ----------KDIRIGDTVLIERAGDVIPQVVKVIEDERDGTEAPYHIPDACPVCGSEVV 434 Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502 + K CTGG+ C AQ ERLKH+ SR+A +IEGLG ++ + A Sbjct: 435 LSDDKKQA------FCTGGMTCPAQFRERLKHYASREATDIEGLGDKRAEQLID----AG 484 Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 I+ +D++ L++ + + D S NL D I L+RF+++LGI V Sbjct: 485 LIQTISDLYELEKADL------LQLERYADKSAQNLIDEIEASLEQDLDRFLYALGIPLV 538 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 G+ AR LA+++ + D +L + +G +A +I F+ + N Sbjct: 539 GSATARLLAQHFDTLDALVDA----------DEDALTTIDDIGPEVAHSIATFFADDANR 588 Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 ++ + + ++ + + VFTG+L+ R Q +V Q GA ++ +S Sbjct: 589 GVIDEMRDAGLTLTNPYAEDAA-PLAGLTFVFTGSLEDWTRSAVQRFVEQHGANATSSVS 647 Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 TD ++ G GSK + A+ LGV +++E+ F LL++ + + Sbjct: 648 GNTDYVVAGPGAGSKRDDAEALGVPVLDEDDFHALLRERDIEM 690 >gi|333024269|ref|ZP_08452333.1| putative NAD-dependent DNA ligase LigA [Streptomyces sp. Tu6071] gi|332744121|gb|EGJ74562.1| putative NAD-dependent DNA ligase LigA [Streptomyces sp. Tu6071] Length = 771 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 209/738 (28%), Positives = 350/738 (47%), Gaps = 63/738 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 R+E + +E+ H YY +P++ D+++D L RR A+ P L P+ Sbjct: 33 PADVREEHDRIAREVDEHRYRYYVNDQPVVSDAQFDELLRRLTALEEEHPQL---RTPDS 89 Query: 74 PLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P K+ G+ V H LSL+ +++ E L + R+ + + + E Sbjct: 90 PTQKVAGDYQQFTPFASVEHRERMLSLDNVFDDEGLAAWAERLAKEIGAPGYH---YLCE 146 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190 K+DG + + YE G+ AA RGDG GED++ +R I IP L+ + PE++EVRGE Sbjct: 147 LKVDGLAVNLTYENGRLTRAATRGDGRVGEDITPNVRTISDIPEQLAGDRVPELVEVRGE 206 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VY DF ALN ++ G KP+ANPRNAA+G LR+ +P TR L+ VHG+G Sbjct: 207 VYFPMEDFEALNARLVDAGEKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAREGF 266 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + + G P + ++ G+ S+ R ++ ++IDG+V K+DE Sbjct: 267 TIDRLSHAYELLHEWGLPTARHNKVVDSLDGVRSFIRYYGEHRHSVEHEIDGVVVKLDEI 326 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ +LG +R+PRW + KF ++ +T+L+DI + +GRTG +TP A +EP+ + G+ + Sbjct: 327 PLQGRLGSTSRAPRWATAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPIVVAGSEVE 386 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN+D +K + + +GD V++++AG+VIP+++ +V+ R + F Sbjct: 387 FATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSERAFV 435 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + + + RC +C AQ ER+ + R + +IE LG Sbjct: 436 MPAECPECGTPLRAM-----KEGDIDLRCPNARSCPAQLRERIFYLAGRKSLDIEHLGYV 490 Query: 490 QLDFFFKSEDPA-FSIRIPADIFTLQRRQQTSTTKI------------------------ 524 + +P+ +R D+F L + Sbjct: 491 AATALTQPIEPSDPPVRDEGDLFDLTAEELLPIRSYVLDQDSGLPKRDPASGEEKIVTFF 550 Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 N G + ++ ++I + L + + L +RHVG A +LA+ + S Sbjct: 551 ANKEGVAKKNTLSMLENIEAAKQRPLAQILTGLSVRHVGPVAAAALAREFRSIDRIFAAE 610 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 + L VG IA ++ ++Y+ + + + S Sbjct: 611 ES----------ELAETEGVGPTIAASLKQWYEEDWHREILRKWKAAGVRMEAAESETDS 660 Query: 645 SE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702 +E +V TGTL++ R A+E + GA V+ +S+KT ++VGDNPGSK +KA Sbjct: 661 GPRPLEGLTVVVTGTLERWTRDAAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAL 720 Query: 703 QLGVKIMNEEQFLFLLQQ 720 L V ++ E+ F LL++ Sbjct: 721 SLKVPVLEEDGFAILLEE 738 >gi|314936043|ref|ZP_07843392.1| DNA ligase, NAD-dependent [Staphylococcus hominis subsp. hominis C80] gi|313655860|gb|EFS19603.1| DNA ligase, NAD-dependent [Staphylococcus hominis subsp. hominis C80] Length = 667 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 241/712 (33%), Positives = 378/712 (53%), Gaps = 53/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + ++ L ++ + YY P + DSEYD L R I +A P+L + Sbjct: 1 MDNIQNRVNELHDLLNQYSYEYYVKDNPSVPDSEYDKLLRELIDIENAHPELKTD---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N E+LR+F RI ++ + E K Sbjct: 58 PTVRVGGEAQSSFEKVNHETPMLSLGNAFNEEELRRFDERIREHIG-----NVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++YE G+FV RGDG +GED++ +R I IP + + +EVRGE Y+ Sbjct: 113 IDGLAVSLKYEDGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLN--VEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + F+ LNDE +P+ANPRNAA+G LR+L+P R L+ F++ + ++ A Sbjct: 171 PRRSFMRLNDEREKNEEQPFANPRNAAAGSLRQLDPKLAAKRKLSVFLYSVNDFTDFSAT 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q + L ++ LGF N+ + G++ Y + R L YDIDG+V KV++ Q Sbjct: 231 TQSDALDELDRLGFKTNHERARVEDIEGVLEYIKKWTKQREQLSYDIDGIVIKVNDLDQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++G +SPRW I++KF ++ T L DI++ IGRTG++TP A LEP+ + G ++ A+ Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTELKDIELSIGRTGVVTPTAILEPIRVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED IK RDIR+GD V+VK+AG++IP+VV I++ R DA+P+ P+ Sbjct: 351 LHNEDLIK-----------ERDIRIGDSVIVKKAGDIIPEVVRSIIDRRPNDAKPYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGNKIIQ 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + + I+ DIF L + + G V NL +I + SLE Sbjct: 453 QLYHHQ----LIKDVGDIFYLTKEDL------LPLERMGTKKVENLLSAIEHAKQNSLEH 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+GA+ ++ LA+ + + + L+ + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGAKASQILAEKFETMDRLLKVTE----------EELVAIHDIGDKLAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668 V + N +E L + + K+ E +NK +V TG LQ++ R +A Sbjct: 553 VTYLDNEDIKALIEKLKDKNVNMTYKGVKSSEIEGHPEFQNKTIVLTGKLQQMTRKEATT 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ GA V++ +++ TD++I G++ GSKL KA+Q G +I +E QF+ + Sbjct: 613 WLEMQGAKVTSSVTKSTDLVIAGEDAGSKLSKAEQFGTEIWSESQFIEKQNE 664 >gi|291536367|emb|CBL09479.1| DNA ligase, NAD-dependent [Roseburia intestinalis M50/1] Length = 671 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 207/710 (29%), Positives = 358/710 (50%), Gaps = 50/710 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E+ ++ L +I+YH D YY P I D E+D L ++ + P+L Sbjct: 1 MTPEE---QIKELRDKINYHSDRYYNQDSPEISDYEFDMLMQQLKKLEKEHPELV---TK 54 Query: 72 NGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P +GG + V H++P LSL+ +++ E++ F+ ++ + F + Sbjct: 55 DSPTQHVGGTAKRTAGVLVHHNVPMLSLQDVFSKEEVVDFVEQMKEQL-----DDPEFVV 109 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG + +RYE G A RGDG + GEDV+A + I + + L PE +E+RG Sbjct: 110 EYKIDGLSMALRYENGDLSLALTRGDGVNFGEDVTANAKVISDVKKKLKDK-PEYLEIRG 168 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EVY+ DF +N++ +G+K +ANPRN A+G LR+L+ R L+ FV + + Sbjct: 169 EVYMKNEDFDRVNEQQELLGKKIFANPRNCAAGTLRQLDSRVTKERKLSMFVFNIQQVRG 228 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + + ++ G P+ + T + + + R L YDIDG V K++ Sbjct: 229 MDIMTHTQGYEFLKRQGIPIIEDYKVCKTADEVWNAITAIGENRGNLGYDIDGAVIKINR 288 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +S ++ LG ++ P+W I++K+ ++ T+LLDI++ +GRTG +TP A EPV + G + Sbjct: 289 YSDRELLGNTSKVPKWAIAYKYPPEEKETKLLDIELSVGRTGRITPTAVFEPVRLCGTSV 348 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHN+D+I L D+ +GD ++V ++GE+IPKV ++ +R + F Sbjct: 349 SRATLHNQDFIDDL-----------DVGIGDTIVVYKSGEIIPKVKEVRKEKRTEGWKRF 397 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 + P CP+C ++ R+ + A +CT C AQ + +FV RDA +I+G G Sbjct: 398 AIPDVCPVCGAKTEREKD------TADIKCTSP-NCPAQLERHIINFVGRDAMDIKGFGT 450 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 ++ + I+ ADIF L+ ++ + + + L ++I K + Sbjct: 451 VYIEELVR----LGYIKDIADIFELKDHREELIEQGII---GKEKNTDKLLETIEKAKEN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + GI +VG A+++ K + S + D +L+ V VG++ Sbjct: 504 DAYMLLTGFGIPNVGKAAAKTIMKRFSSILDLEDA----------DRDALMEVDDVGEVS 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A I F+ + +N + L + + S + K +V TGTL + R +A E Sbjct: 554 ADCIFRFFHDEKNKEMIARLKSLGVNMEAEETETIDSAVSGKTVVITGTLPTLGRKEAAE 613 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 V + G VS +S+KTD ++ G++ GSKL KAQ+LG+ ++ E + LL Sbjct: 614 LVEKYGGKVSGSVSKKTDYVVAGESAGSKLTKAQELGITVLTEAELFVLL 663 >gi|229815888|ref|ZP_04446212.1| hypothetical protein COLINT_02944 [Collinsella intestinalis DSM 13280] gi|229808583|gb|EEP44361.1| hypothetical protein COLINT_02944 [Collinsella intestinalis DSM 13280] Length = 752 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 237/735 (32%), Positives = 350/735 (47%), Gaps = 76/735 (10%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 L + YH YY P I D+ +D L I A P+L P+ ++GG + Sbjct: 49 ELRHLLDYHAYRYYALDAPEITDAAFDKLLVELQQIEAAHPELV---TPDSYTQRVGGYV 105 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 + VTH S++ N+E+L +++ R + +T E KIDG + I Sbjct: 106 SEQFTPVTHMARMYSMDDAMNLEELDEWLARTEEALGA---GRVAYTCELKIDGLGVAIT 162 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII--------EVRGEVYIS 194 Y+ G FV AA RGDG +GEDVS +R I +P LS + EVRGEVY+ Sbjct: 163 YQNGAFVRAATRGDGTTGEDVSLNVRTIKDVPMHLSEAALAHMGADRGTPIEVRGEVYMP 222 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 K F LN E A GR+P+ANPRNAA+G LR+ +P TR L F++ + T+ + Sbjct: 223 KGSFARLNAEADAEGREPFANPRNAAAGSLRQKDPKVTATRSLATFIYSIADTAPLHVDS 282 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q+ L +R GF VN V + + + ++ + + R L YDIDG+V KVD F Q Sbjct: 283 QHAFLDWLREAGFSVNASVARCTSPAEVHAFCADALAHRGDLDYDIDGVVVKVDGFDQQA 342 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG AR+PRW I+ KF ++ +T L +I IQ+GRTG+LTPVA +PV + G+ I ATL Sbjct: 343 DLGFTARAPRWAIAFKFPPEEKTTVLREIRIQVGRTGVLTPVAEFDPVTVAGSTIARATL 402 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ +D+RVGD ++V +AG+VIP+VV ++++R DA + P Sbjct: 403 HNLDEIRR-----------KDVRVGDTIIVHKAGDVIPEVVGPMLDKRPADAVEWDMPEA 451 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S VV + + + L C AQ ERL H+VSR +++GLG D Sbjct: 452 CPACGSPVVHEGDEVAYR-------CVSLDCPAQLKERLIHWVSRGCMDVDGLG----DE 500 Query: 494 FFKSEDPAFSIRIPADIFTLQ--------------RRQQTSTTKIENILGFGDVSVTNLY 539 A +R AD +TL + + + + G + Sbjct: 501 LIDKMIEAGLLRDVADFYTLDASAIAALDTGRTYAKDDKKKGVAAGDPIKVGHTIAGKVM 560 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 D + + + L R +F+LGIRHVG +A LA+ +L+ A + Sbjct: 561 DELVRSKAQPLSRVLFALGIRHVGKSVAEVLAQRFLTIDALAAASE----------EDIA 610 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---------------S 644 +G IA ++ EF N+ ++ L + V Sbjct: 611 ACEGIGPKIAASVREFLSVSENLEVLQRLREAGLALEENLGAAVAQAAQETGVDADLAAG 670 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 ++ V TGTL R +A + LGA VS +S+KT ++ G GSKL KA+ L Sbjct: 671 QPLDGLAFVLTGTLVNRTRDEAGAALKLLGAKVSGSVSKKTSYLVAGPKAGSKLTKAESL 730 Query: 705 GVKIMNEEQFLFLLQ 719 GV +++EE +L Sbjct: 731 GVPVLDEEALERILA 745 >gi|318059490|ref|ZP_07978213.1| NAD-dependent DNA ligase LigA [Streptomyces sp. SA3_actG] gi|318076490|ref|ZP_07983822.1| NAD-dependent DNA ligase LigA [Streptomyces sp. SA3_actF] Length = 783 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 210/738 (28%), Positives = 350/738 (47%), Gaps = 63/738 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 R+E + +E+ H YY +P++ D+++D L RR A+ P L P+ Sbjct: 33 PADVREEHDRIAREVDEHRYRYYVNDQPVVSDAQFDELLRRLTALEEEHPQL---RTPDS 89 Query: 74 PLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P K+ G+ V H LSL+ +++ E L + R+ + + + E Sbjct: 90 PTQKVAGDYQQFTPFASVEHRERMLSLDNVFDDEGLAAWAERLAKEIGVPGYH---YLCE 146 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190 K+DG + + YE G+ AA RGDG GED++ +R I IP L+ + PE++EVRGE Sbjct: 147 LKVDGLAVNLTYENGRLTRAATRGDGRVGEDITPNVRTISDIPEQLAGDRVPELVEVRGE 206 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VY DF ALN ++ G KP+ANPRNAA+G LR+ +P TR L+ VHG+G Sbjct: 207 VYFPMEDFEALNARLVDAGEKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAREGF 266 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + + G P + ++ G+ S+ R ++ ++IDG+V K+DE Sbjct: 267 TIDRLSHAYELLHEWGLPTARHNKVVDSLDGVRSFIRYYGEHRHSVEHEIDGVVVKLDEI 326 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ +LG +R+PRW + KF ++ +T+L+DI + +GRTG +TP A +EP+ + G+ + Sbjct: 327 PLQGRLGSTSRAPRWATAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPIVVAGSEVE 386 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN+D +K + + +GD V++++AG+VIP+++ +V+ R + F Sbjct: 387 FATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSERAFV 435 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + + + RC +C AQ ER+ + R + +IE LG Sbjct: 436 MPAECPECGTPLRAM-----KEGDIDLRCPNARSCPAQLRERIFYLAGRKSLDIEHLGYV 490 Query: 490 QLDFFFKSEDPA-FSIRIPADIFTLQRRQQTSTTKI------------------------ 524 + +P+ +R D+F L + Sbjct: 491 AATALTQPIEPSDPPVRDEGDLFDLTAEELLPIRSYVLDQDSGLPKRDPASGEEKIVTFF 550 Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 N G + ++ ++I + L + + L IRHVG A +LA+ + S Sbjct: 551 ANKEGVAKKNTLSMLENIEAAKQRPLAQILTGLSIRHVGPVAAAALAREFRSIDRIFAAE 610 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 + L VG IA ++ ++Y+ + + + S Sbjct: 611 ES----------ELAETEGVGPTIAASLKQWYEEDWHREILRKWKAAGVRMEAAESETDS 660 Query: 645 SE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702 +E +V TGTL++ R A+E + GA V+ +S+KT ++VGDNPGSK +KA Sbjct: 661 GPRPLEGLTVVVTGTLERWTRDAAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAL 720 Query: 703 QLGVKIMNEEQFLFLLQQ 720 L V ++ E+ F LL++ Sbjct: 721 SLKVPVLEEDGFAILLEE 738 >gi|163841673|ref|YP_001626078.1| NAD-dependent DNA ligase [Renibacterium salmoninarum ATCC 33209] gi|190359277|sp|A9WTZ3|DNLJ_RENSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|162955149|gb|ABY24664.1| NAD-dependent DNA ligase [Renibacterium salmoninarum ATCC 33209] Length = 758 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 217/734 (29%), Positives = 364/734 (49%), Gaps = 61/734 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R E S L ++I ++ YY ++ ++ D+E+D L RR + I P+L + P + Sbjct: 33 RAEYSKLVEDIRHYRFAYYNEAESLVSDAEFDVLFRRLEEIEALHPELI---SNDSPTQE 89 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-----SIFFTLEP 132 +GGE++ + V H+ SLE +++IE+L+ +I + +K + + + E Sbjct: 90 VGGEVSAAFTPVQHTSQIYSLEDVFSIEELQSWIIKAQANAEKLAGSIVAERPLRWLTEL 149 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191 KIDG + + Y G+ V AA RGDG +GED++ + I IPR L PE +E+RGEV Sbjct: 150 KIDGLAVNLLYRNGQLVRAATRGDGITGEDITHNVLTIQEIPRQLRGENLPEEVEIRGEV 209 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 +I+ DFLALN++++ GR P+ANPRNAA+G LR+ +P R L+ VHG+G + Sbjct: 210 FIASKDFLALNEQIVGTGRAPFANPRNAAAGSLRQKDPADTAKRPLSMLVHGIGSRIGLD 269 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q E ++ G P + + + ++ Y N R L ++IDG+V K+D+F+ Sbjct: 270 VASQSESYALLKAWGLPTSPYFKVLTGYQEVLDYINHYGEHRHDLLHEIDGIVIKIDDFA 329 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q LG +R PRW +++K+ ++ T+LLDI + +GRTG +TP +EPV + G+ + Sbjct: 330 SQNALGFTSRVPRWAVAYKYPPEEVHTKLLDILVNVGRTGRVTPFGVMEPVKVAGSTVEM 389 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN+D +K + + +GD V++++AG+VIP++V ++ R + F Sbjct: 390 ATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEIVGPVLALRDGREREFVM 438 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C + + + RC +C Q ER+ H R AF+IE LG + Sbjct: 439 PTECPSCGTALA-----PAKEGDVDIRCPNAKSCPDQLRERVFHLAGRGAFDIEALGWEA 493 Query: 491 LDFFFKSEDPAF-SIRIPADIFTLQRRQ------------------------QTSTTKIE 525 + +P +R A IF L + E Sbjct: 494 AIALTQPAEPELAPVRNEAQIFNLVAEDLALVKIKREKKVKGVLSGVHELVPYFYSKGTE 553 Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 + L+ + K + L R + +L IRHVG +R+LA + S Sbjct: 554 EKPSEPTSNTVKLFIELEKAKAQPLWRVLVALSIRHVGPTASRALATAFGSMAAIRAASE 613 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645 L V VG IA A++E++ + ++A + +++V Sbjct: 614 P----------ELAEVDGVGPTIAAALIEWFAEDWHREIIDAWAADGVRMADERDESVRR 663 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 + +V TG+L+K R +A+E + G + +S+ TD ++ G+N G+KL+KA++LG Sbjct: 664 TLAGLTIVVTGSLEKFNRDQAKEAIINRGGKSAGSVSKNTDYVVAGENAGTKLDKAEKLG 723 Query: 706 VKIMNEEQFLFLLQ 719 V +++E F LL Sbjct: 724 VTVLDEAGFETLLA 737 >gi|218295128|ref|ZP_03495964.1| DNA ligase, NAD-dependent [Thermus aquaticus Y51MC23] gi|218244331|gb|EED10856.1| DNA ligase, NAD-dependent [Thermus aquaticus Y51MC23] Length = 674 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 234/712 (32%), Positives = 381/712 (53%), Gaps = 52/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++E AR+ ++ L I YH+ YY P I D+EYD L R + FP+L + P Sbjct: 1 MTLEAARRRVNELRDLIRYHNYLYYVLDAPEISDAEYDRLLRELKELEERFPEL---QSP 57 Query: 72 NGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G S V H SL+ ++++++R F RI R +K +T+ Sbjct: 58 DSPTEQVGARPLESTFRPVRHPTRMYSLDNAFSLDEVRAFEERIERALGRK--GPFLYTV 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K+DG + + YE+G V+ A RGDG +GE+V+ + I TIPR L+ P+ +EVRGE Sbjct: 116 EHKVDGLSVNLYYEEGILVFGATRGDGETGEEVTQNLLTIRTIPRRLTGV-PDRLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VY+ FL LN E+ G + + NPRNAA+G LR+ +P R L + LG E Sbjct: 175 VYMPIEAFLRLNQELEEAGERIFKNPRNAAAGSLRQKDPRVTARRGLRATFYALGLGLEE 234 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K Q+++L +R GFPV +G +A G+ Y R LP++ DG+V K+D+ Sbjct: 235 TGLKSQHDLLLWLRERGFPVEHGFTRALGAEGVEEVYQAWLKERRKLPFEADGVVVKLDD 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +L ++LG AR+PR+ +++KF ++ TRLL + Q+GRTG +TPV LEPV I G+ + Sbjct: 295 LALWRELGYTARAPRFALAYKFPAEEKETRLLSVAFQVGRTGRITPVGVLEPVFIEGSEV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + TLHNE +I+ L D+R+GD VLV +AG VIP+V+ ++ R + +P Sbjct: 355 SRVTLHNESFIEEL-----------DVRIGDWVLVHKAGGVIPEVLRVLKERRTGEEKPI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 +P CP C ++++ HRC L C A++ E ++H+ SR A +I+GLG+ Sbjct: 404 LWPENCPECGHALIKE--------GKVHRCPNPL-CPAKRFEAIRHYASRKAMDIQGLGE 454 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + +R AD++ L++ + + G+ S NL I + + Sbjct: 455 KLIEKLLEK----GLVRDVADLYRLKKEDLVN------LERMGEKSAENLLRQIEESKGR 504 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 LER +++LG+ VG +AR+LA + + L+ V VG++ Sbjct: 505 GLERLLYALGLPGVGEVLARNLALRFGHMDRLLEA----------GLEDLLEVEGVGELT 554 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A+AI+ ++P V L + + + ++ V TG L + R + + Sbjct: 555 ARAILNTLKDPEFRDLVRRLKEAGVEMEAKERE--GEALKGLTFVITGELSR-PREEVKA 611 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + +LGA V+ +SRKT ++VG+NPGSKLEKA+ LGV ++EE+ L+++ Sbjct: 612 LLRRLGAKVTDSVSRKTGFLVVGENPGSKLEKARALGVPTLSEEELYRLIEE 663 >gi|254422498|ref|ZP_05036216.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7335] gi|196189987|gb|EDX84951.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7335] Length = 694 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 217/714 (30%), Positives = 339/714 (47%), Gaps = 54/714 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + L ++ YY P + DS YD L R + +P L + + P Sbjct: 21 EIETRAAELRSQLQKASYAYYVLDAPELPDSVYDRLYRELQTLEDQYPGL---QTSDSPT 77 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G E V H+IP SLE ++ E+ + R R + D E KID Sbjct: 78 QRVGAEPAEQFTSVRHNIPLYSLENAFDTEEYLDWQARWQRL--EPDVGETTAVAELKID 135 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRGEV 191 G + + YE G + RGDG +GED++ +R I TIP L + P ++EVRGE Sbjct: 136 GNALALTYENGMLIRGVTRGDGIAGEDITQNVRTIRTIPLRLHIENGQAPPPVVEVRGEA 195 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL----GKT 246 ++ + F +N + A G +ANPRNAA+G LR+L+ R L+FF + + G Sbjct: 196 FLPLDVFDDINQKRQAEGTALFANPRNAAAGTLRQLDAKIVAERQLDFFAYTVLMPEGTG 255 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 Q+ L ++ L F VN + + SYY+E + R LPY DG+V K+ Sbjct: 256 DLDAPTTQWTALDLLQTLRFRVNPHRKLCQRAAEVASYYDEWEEKRHDLPYLTDGVVVKL 315 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D F LQ +LG + PRW I+ K+ ++ T L I +Q+GRTG +TPVA L PV + G Sbjct: 316 DSFELQDRLGFTNKFPRWAIALKYPAEEVPTTLNKITVQVGRTGAITPVAELSPVQLAGT 375 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ ATLHN D + L D+ +GD V+V++AGE+IP+VV ++ + R A+ Sbjct: 376 TVSRATLHNADRLIEL-----------DLHLGDTVVVRKAGEIIPEVVRVLSDLRPKGAK 424 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + P+ CP+C VV+ A RC +C A L+H+ SRDA +I GL Sbjct: 425 AYQLPTNCPVCDQPVVKPEGE------AVTRCVN-QSCPAILSGSLRHWASRDALDISGL 477 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++ + + + AD++ L + G L +I + Sbjct: 478 GERLVQSWIDQS----VVTSIADLYDLTLEDL------LPLERMGKQLANKLLQAIALSK 527 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + ++ LGIR VG+ A+ LA + S A ++IA ++ +G Sbjct: 528 QKPWAKVLYGLGIRLVGSTNAQILANRFPSVAMLAAADESVIA----------QIYGIGP 577 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRH 664 IAQ++ +++Q P N + L +K + K V TGTL ++R Sbjct: 578 EIAQSVRQWFQLPANQQLIARLEAAGLQLEATPQKIDQRPQPLMGKSFVLTGTLPTLKRA 637 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+ + G VS S KTD ++VG+N GSK KA +LG+K + E + + LL Sbjct: 638 EAKAQIQAAGGRVSGAPSAKTDYVVVGENAGSKQAKADELGLKQLTEAELIELL 691 >gi|323467080|gb|ADX70767.1| DNA ligase [Lactobacillus helveticus H10] Length = 689 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 215/720 (29%), Positives = 368/720 (51%), Gaps = 51/720 (7%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 Q + + +++++A+KE +SL ++ D YY P + D+ YD R + AFP Sbjct: 17 NQEVKMAKITLDEAKKEAASLRTKLDEWADAYYSKDAPEVEDNVYDQSYNRLLELEKAFP 76 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 ++ P+ ++GGE++ KV H IP LS+ +++ ++L++F R+ + Sbjct: 77 EIV---TPDSITQRVGGEIDSDFTKVNHPIPMLSMGDVFSKDELKEFDQRMQKLVG---- 129 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 + + + +E KIDG +++ Y+ GK V A+ RG+G+ GEDV+A R I IP+VL + Sbjct: 130 HPVEYNVELKIDGLSLSLEYQDGKLVRASTRGNGYIGEDVTANARYIADIPQVLPEPL-- 187 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243 IEVRGE Y+ K F LN E G +ANPRNAA+G LR+L+P + Sbjct: 188 TIEVRGECYMGKEAFAKLNQEREDEGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYT 247 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 Q++ +++M LGF N R+ + + +E + R++L Y IDG+V Sbjct: 248 WVNPPREITSQHQAIERMHELGFHTNETGRKLANLDEVFDFIDEYTAKRNSLTYGIDGIV 307 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KVD+ SL++QLG + PRW I++KF ++ T + DI +GRTG++TP A + PV + Sbjct: 308 LKVDDLSLEQQLGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMYPVQL 367 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G + A+LHN DY+ + +R+GD V + +AG++IP++ ++++++R Sbjct: 368 AGTTVARASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVLSKRPA 416 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 D+ P+ P+ CP C ++V + A RC +C AQ E + HF SR A NI Sbjct: 417 DSVPYEIPTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGIIHFASRPAMNI 469 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 GLG + + + + AD++ L + F + S+ NL +I+ Sbjct: 470 AGLGPKIVKQLIAKD----LVHNVADLYHLTEDDL------AQLDHFKEKSINNLLTAID 519 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + S+E I LGI HVGA+ AR +A+ + + + + + Sbjct: 520 NSKKNSVELLITGLGIDHVGAKAARLIAQKFKNLEKIMSL----------GVQDIASIDT 569 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI----GRHEKNVSSEIENKKLVFTGTLQ 659 +G A+++ ++ P +E L + E+ + ++K +V TG L+ Sbjct: 570 IGMATAESMTTYFAQPEAQKLIEELRESGLNMDYLGADEQEEAPDNPFKDKTVVLTGKLE 629 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R + + + LGA V+ +S KTD +I G + GSK KA+QLGV ++ EE+ + ++ Sbjct: 630 HYTRSEFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYNKAEQLGVPLLTEEEAIAQIE 689 >gi|184201319|ref|YP_001855526.1| NAD-dependent DNA ligase [Kocuria rhizophila DC2201] gi|254781351|sp|B2GL64|DNLJ_KOCRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|183581549|dbj|BAG30020.1| NAD(+)-dependent DNA ligase [Kocuria rhizophila DC2201] Length = 766 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 223/750 (29%), Positives = 358/750 (47%), Gaps = 73/750 (9%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E R+E + L + YY + +P+I D+EYD L R + P+L + + P Sbjct: 27 EALREEYAQLSDRVREARAAYYVHDQPVISDAEYDQLYRSLEEFEALHPELKAN---DSP 83 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NSIFFTLEPK 133 ++GGE+ + V H SLE +++ ++L ++ R + + + + E K Sbjct: 84 TQEVGGEVGAAFSPVKHLEKMYSLEDVFSTDELVAWLERAQKQVAELPGAPEVAWLSEVK 143 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 IDG + + Y G V AA RGDG +GED++ + I TIP+ LS PE +EVRGEV+ Sbjct: 144 IDGLAVNLLYRDGVLVRAATRGDGTTGEDITHNVATIKTIPQRLSGENLPEEVEVRGEVF 203 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 IS DF LN+ M+ GR P+ANPRNAA+G LR+ +P R L+ FVHG+G + Sbjct: 204 ISSKDFRTLNEAMVEEGRAPFANPRNAAAGSLRQKDPQVTARRPLSMFVHGIGYVRGVDL 263 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + Q E + +R G PV+ R +T ++ + E R L ++IDG+V KVD+ Sbjct: 264 ETQSEAYEILRGWGLPVSPYSRVLSTVAEVLEFIAEFGDKRHALLHEIDGIVVKVDDRRT 323 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG +R PRW +++K+ ++ +T L+DI + +GRTG +TP ++PV + G+ + A Sbjct: 324 QFRLGYTSRVPRWAVAYKYPPEEVNTTLVDILVNVGRTGRVTPFGLMDPVRVAGSTVEMA 383 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+D ++ + + +GD V++++AG+VIP++V +V R + F P Sbjct: 384 TLHNQDMVR-----------AKGVLIGDTVVLRKAGDVIPEIVGPVVALRDGSEREFVMP 432 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C + + + RC C +Q ER+ H R AF+IE LG++ Sbjct: 433 AECPSCGTPLR-----PAKEGDVDIRCPNAETCPSQLKERVNHAAGRGAFDIEALGEEAA 487 Query: 492 DFFFKS---------EDPAFSIRIPADIFTLQRRQQTSTTKIENILGF------------ 530 + E +R A +F L + Sbjct: 488 RALTQPVPLDAPDGTELSVPPLRNEAGLFDLTPEDLRDVMVWRDARRTVTDEETGEKVQR 547 Query: 531 --------------------GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 + ++ + + ++ L R + +L IRHVG ARSL Sbjct: 548 VTPELVPYFWTKPTKARPSVPSKTTEQMFAQLEQAKDTELWRVLVALSIRHVGPTAARSL 607 Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 A S Q D +L VG +IAQA+ EF+ P VE Sbjct: 608 ATSLRSMDAIRQA----------DPETLAGTDGVGPVIAQAVQEFFAEPWRRRVVEQWAA 657 Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690 +++ +E +V TG+L+ R A+E + + G S +S+KT ++ Sbjct: 658 AGVRMEEEVDESTPRTLEGVTVVVTGSLEGYSRDSAKEAILKRGGKASGSVSKKTHFLVA 717 Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 GDN G+KL+KA+ LGV +++E F LL Q Sbjct: 718 GDNAGTKLDKAESLGVPVLDEAGFEQLLAQ 747 >gi|296123087|ref|YP_003630865.1| DNA ligase, NAD-dependent [Planctomyces limnophilus DSM 3776] gi|296015427|gb|ADG68666.1| DNA ligase, NAD-dependent [Planctomyces limnophilus DSM 3776] Length = 707 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 228/728 (31%), Positives = 367/728 (50%), Gaps = 59/728 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S +QAR L L QEI HD YY ++ I D EYD L R + AFP+L + + Sbjct: 18 SADQARHLLDKLRQEIRRHDRLYYVLAQNEISDLEYDRLMARLLEVEAAFPELTTA---D 74 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-DNSIFFTLE 131 P K+GGE +V HS+P LS++ +++ L +F ++ R + + + E Sbjct: 75 SPSQKVGGEPIEGFVQVAHSVPMLSIDNVYDESGLLEFGQKVSRRASEVGWKGPMEWLAE 134 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-----------N 180 K+DG +++ YE+GK + A RGDG G+DV+ + I +P L N Sbjct: 135 FKVDGVALSLIYEEGKLIRAVTRGDGRVGDDVTHNAKTIKGVPLFLEDGSSKKSLFAESN 194 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 IP ++EVRGE YI DF + + G +P+ N RNA +G L+ L+P R L FF Sbjct: 195 IPRLLEVRGEAYIGNQDFAKVRAHQLERGEEPFKNSRNATAGSLKLLDPKLCAQRQLRFF 254 Query: 240 VHGLGKTSEI---FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296 H LG E K + L+ +G P +F V+ M STL Sbjct: 255 AHSLGAIDEQEATRFKTHADYLELFYQVGLPTVPMTACHPSFEAAVAASPTMMEALSTLD 314 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 +++DGLV+KV+ +L+ +LG ++SPRW++++K+ +A+T++L+I +Q+G+TG+LTPVA Sbjct: 315 FEVDGLVFKVNNLALRAELGMTSKSPRWIVAYKWERYEAATKVLNITVQVGKTGVLTPVA 374 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 LEPV I G ++ ++LHN D I+ L + VGD V+V++AG++IP +V + Sbjct: 375 DLEPVEIAGTTVSRSSLHNRDEIERL-----------GLGVGDTVIVEKAGKIIPHIVRV 423 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 + R + P+ FP CP C + V +D + + C A+ E L++F Sbjct: 424 EEHLRPTNTAPYRFPETCPECSTIVEQDEGGVYIR-------CPNINCPARFRESLRYFA 476 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 SR A +IEGLG + ++ S ++ +D++ L ++ G+ SV Sbjct: 477 SRQAMDIEGLGTKLVEQLVSSR----LVQSISDLYRLVDKRAELLELERL----GEKSVD 528 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 +L + R L R + +L IRHVG A+ LA+ + S + + Sbjct: 529 SLLAGLEASRQQPLWRLLTALNIRHVGQRTAQILAERFGSMDRLSAQT----------IE 578 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKL 652 L P VG++IAQ++ F+ +E L L + S + + K Sbjct: 579 ELSATPEVGEVIAQSVHHFFHTEYGSKLIEELKNLGLNLGTESEQKQIAATEGVLSGKTF 638 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TGTL + R + +E + G ++ +S+KT ++ G+N GSKL KAQ LGV ++NE Sbjct: 639 VVTGTLPSMGREEIEELIRLHGGHAASSVSKKTSFVVAGENAGSKLTKAQSLGVPVINEA 698 Query: 713 QFLFLLQQ 720 +F+ L+ + Sbjct: 699 EFMKLIGK 706 >gi|224369899|ref|YP_002604063.1| LigA1 [Desulfobacterium autotrophicum HRM2] gi|254781310|sp|C0QJ86|DNLJ_DESAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|223692616|gb|ACN15899.1| LigA1 [Desulfobacterium autotrophicum HRM2] Length = 685 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 249/722 (34%), Positives = 388/722 (53%), Gaps = 58/722 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S ++ +KE L +++ H+ Y+ P+I D EYD + +R AI FP+L P+ Sbjct: 7 SFDRIKKEARLLREQLHVHNINYHVKDDPVISDGEYDRMMQRLIAIETQFPEL---STPD 63 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +IG + + H+IP SL+ ++ +D+ F R + D I +T+EP Sbjct: 64 SPTRRIGAKALTAFETAEHAIPMQSLDNAFSDQDVIDFHNRTAKILNTSD---IRYTVEP 120 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP----RVLSLNIPEIIEVR 188 K+DG + +RYE+G A RGDG GE ++ R IP++P + IP+++EVR Sbjct: 121 KLDGVAVELRYEQGSLTLALTRGDGTMGEVITDNARTIPSVPLKLAPAGNGTIPDVLEVR 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEV I+ DF LN + +A G +ANPRNAA+G LR+L+ R L FV+G+G+ Sbjct: 181 GEVIINSKDFEGLNKKRLATGEPLFANPRNAAAGSLRQLDSRVTAKRPLEIFVYGVGRAQ 240 Query: 248 EIFAKGQYEMLQKM----RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 E+ A + + LGF +N +R + ++ + +++R L Y+IDG+V Sbjct: 241 ELMANFDIGSHSALLESLKRLGFRINPLIRSGLSLTEVLDRFKAFETMRQDLDYEIDGMV 300 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KVD+ Q++LG +ARSPRW I++KF + +T + DI +Q+GRTG LTPVA LEPVNI Sbjct: 301 IKVDDIVFQERLGTKARSPRWAIAYKFPAMEETTVINDIIVQVGRTGTLTPVAILEPVNI 360 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++ A+LHN+D I+ +DIR+ D VLVKRAG+VIPKVV + R Sbjct: 361 GGVMVARASLHNQDEIQ-----------NKDIRINDTVLVKRAGDVIPKVVKPVTALRTG 409 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + F P+ CP+C S V R N AA +C +C AQ +RLKHFVS+ F++ Sbjct: 410 SERVFVMPTHCPVCHSPVRRLDNE------AAVKCINA-SCKAQLKQRLKHFVSKGGFDM 462 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGLG + +D + AD+FTL R + G+ S TN+ +I Sbjct: 463 EGLGTKLIDQLVDRT----LVGSFADLFTLDRETLAAM------DRMGEKSATNIVQAIE 512 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + + I L+RF+F+LG+ H G A+ L+ + + + + +L + Sbjct: 513 RSKRIPLKRFLFALGMAHTGESAAQLLSSTFFTLEALLKA----------SAEALGAIEG 562 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-----SEIENKKLVFTGTL 658 VG A ++V F+ NP N + +++ + + K++V TGTL Sbjct: 563 VGPKTADSVVAFFANPDNQETIARMMENGVVIENHTVVESAALDNATFFSEKRVVLTGTL 622 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R +A++ + + GA V + +S+ TDI++ G+ GSKL KA+ LGV IM+E+ FL L Sbjct: 623 GTLTRSEAKQRLEEQGARVVSSVSKNTDILVAGEASGSKLVKARSLGVTIMDEQTFLEHL 682 Query: 719 QQ 720 + Sbjct: 683 DR 684 >gi|148927169|ref|ZP_01810794.1| DNA ligase, NAD-dependent [candidate division TM7 genomosp. GTL1] gi|147887384|gb|EDK72833.1| DNA ligase, NAD-dependent [candidate division TM7 genomosp. GTL1] Length = 675 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 214/717 (29%), Positives = 365/717 (50%), Gaps = 50/717 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ R+ L + +S + YY +P + D+ YD+L + P+L + Sbjct: 1 MTKPHLRERAIKLRELLSQYSYEYYVLDRPSVADAIYDSLFGELKKLEAEHPELITA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG KV H LSL +++ E++ ++ R+ + + D + F E Sbjct: 58 DSPTQRVGGVPIAKFQKVEHRTRMLSLNDVFSREEVEAWLLRVRK-LAPEMDEKVEFFAE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL------SLNIPEII 185 K+DG ++ YE GK V A RGDG GEDV++ +R IP++P L + I Sbjct: 117 VKMDGLACSLIYENGKLVRAVTRGDGLVGEDVTSNVRTIPSVPLALRTNKEDWRFLKGIT 176 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGE+ + K DF LN ++ G+K YANPRN A+G +R+L+P R L F + L Sbjct: 177 EVRGEIVMFKKDFELLNAQLEQEGKKTYANPRNLAAGTIRQLDPRLVAQRKLYFLAYDLL 236 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + + +R LGF N + + +V + + R LPY+ DG+V Sbjct: 237 RDDPAEVPTWEMAYRIVRELGFRSNRDAKVIQSVDELVEFAESWEKKRFDLPYNTDGMVI 296 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 K+++ +L + LG ++PR I++K+ +QA+TR+ DI + IGRTG TPVA LEPV I Sbjct: 297 KLNDRALYRALGVVGKNPRGAIAYKYPAEQATTRIKDIFVSIGRTGAATPVAMLEPVVIA 356 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G+ + ATLHNED +K + + +GD V+V++AG++IP+V+ I R+ Sbjct: 357 GSTVQMATLHNEDEVKR-----------KGVLIGDTVVVQKAGDIIPEVISPIEKLRNGS 405 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + F P CP C++ +VR A RC + C A+ ++HF S+ A +I+ Sbjct: 406 EKAFKMPKNCPECETDLVRPEGE------AVWRCPNPI-CPAKTWRSIQHFASKAALDID 458 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+G++ + A I+ AD++ L++ Q + F D+S L D+I Sbjct: 459 GMGEKNVAALLD----AGLIKDAADLYVLKKEQI------LELERFADISAGKLIDAIAA 508 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 +++ L +F+F+LGIRHVGA+ A + ++ S Q L V V Sbjct: 509 KKHPPLAKFLFALGIRHVGAQTAIDVTAHFGSLTAIRQAT----------IDQLHEVEGV 558 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G+++A++IV ++++P + ++ K + + V TG+L + R Sbjct: 559 GEVVAESIVAWFEDPEHQALLDKFEKYGVQPQDVKQAPTKGPLAGIHFVITGSLHSLDRE 618 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +A + + LG + + + TD ++ GDN GSKL KA++ G KI++E++ ++++ Sbjct: 619 EAADKIRALGGIFQTAVGKNTDYLVAGDNVGGSKLAKAEKFGTKIIDEQKLRDMIRE 675 >gi|11967289|gb|AAG42042.1| NAD-dependent DNA ligase [Aquifex pyrophilus] Length = 719 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 234/724 (32%), Positives = 380/724 (52%), Gaps = 51/724 (7%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 ++ ++ LS+E+A++ L++ I +HD YY + P+I D +YD L R I FP Sbjct: 20 RIKSLKDLSLEEAKRLAEELKEVIRFHDYKYYVQASPVISDYDYDRLFRALKEIERKFPQ 79 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 P+ P ++ E+ V H P LSL+ + E+L+++ R+ + Sbjct: 80 FI---TPDSPTQRVASEITGEFPTVKHYAPMLSLDNAYTEEELKEWDRRVRELTGFEV-- 134 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 + +T+EPK+DG I + Y+ FV A RGDG GED++ ++ I TIP + I Sbjct: 135 -VEYTVEPKLDGAGIALVYKDDIFVRGATRGDGEYGEDITNNLKTIKTIPLKAEFSRFGI 193 Query: 185 I--EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD---ITRYLNFF 239 E+RGEV I+K +F LN E I G P+ANPRNAA+G +R+ +P + + Sbjct: 194 KLAEIRGEVVINKEEFKKLNQERIEEGLPPFANPRNAAAGSIRQKDPKEVAKRRLEAVVY 253 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 + E K YE L+ + LGF + ++ Y E + R T PY+ Sbjct: 254 QLSYVEPPERDPKTHYESLKMLDTLGFKTLFKDTKLCRGIDEVIEYCKEWEEKRDTYPYE 313 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+V KV++ L ++LG + PRW I++KF ++A T+L+D+ Q+GRTG +TPV +L Sbjct: 314 IDGMVVKVNDRRLYEKLGYTSHHPRWAIAYKFKPRRAVTQLVDVVFQVGRTGAITPVGKL 373 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GG +++ +L NED+I+ +DIR+GD VLV+RAG+VIP + D++ Sbjct: 374 EPVQVGGVTVSSVSLFNEDFIR-----------EKDIRIGDYVLVERAGDVIPYIADVLK 422 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 +R + + FP CP C S +V+ + A RC + C AQ + R+KH+ SR Sbjct: 423 EKRSGEEREIVFPERCPSCGSELVKLPDE------VARRCIN-IGCPAQSVLRVKHWASR 475 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 +A +I GLG + F +R + + + GFG+ S NL Sbjct: 476 EAMDIRGLGDATVKLLFNR----GLVR------DVGDLYYLKLLDLLRLPGFGERSALNL 525 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +I + +N ++R ++ LGIR+VG+ A+ +++ S + Sbjct: 526 LRAIEESKNRPIDRVLYGLGIRYVGSTTAKKISEIINSIWELKDIP----------IERI 575 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 +R+ VG +A++I EF+ P N+ +E L K + + ++ ++ K VFTGTL Sbjct: 576 MRLEGVGYKVAKSIKEFFSVPENLKVLEKLEKAGVNLEKKKTEKIADVLKGKTFVFTGTL 635 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717 + R KA E V LG S ++ +TD ++VG PG +KLEKA++ GVK + EE+F+ + Sbjct: 636 ECCSREKAGEIVESLGGKFSNSVTSRTDYLVVGKEPGRTKLEKAKKYGVKTITEEEFINM 695 Query: 718 LQQY 721 ++ Y Sbjct: 696 IKDY 699 >gi|297570387|ref|YP_003691731.1| DNA ligase, NAD-dependent [Desulfurivibrio alkaliphilus AHT2] gi|296926302|gb|ADH87112.1| DNA ligase, NAD-dependent [Desulfurivibrio alkaliphilus AHT2] Length = 680 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 241/709 (33%), Positives = 382/709 (53%), Gaps = 47/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 EQAR+ ++ L ++I YH+ YY P I D+EYDAL R + +P LA + + Sbjct: 11 KEQARQRVAELREQIRYHNHRYYVLDDPEIPDAEYDALFRELQELEERYPGLAGA---DS 67 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G E V H +P LSLE +N ++ F+ R+ RF ++ EPK Sbjct: 68 PSRQVGAEPLAQFAPVAHRLPMLSLENAFNEGEISDFLLRLGRFLHTDQVPALH--AEPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGE 190 +DG + + YE G F + RGDG +GE+++A + I TIPR L P +E+RGE Sbjct: 126 LDGLAVELVYEDGLFTLGSTRGDGFTGENITANLATIATIPRRLKTGGNPPPARLEIRGE 185 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V +S F LN G +ANPRNAA+G LR+L+P R L FF +G ++ + Sbjct: 186 VCLSITGFKELNRRRGEAGESLFANPRNAAAGSLRQLDPAITADRPLEFFAYGAADSAAL 245 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q ++L+++ G + R ++++ + R +PY+IDG+V KV++ Sbjct: 246 AVTTQAQLLEQLHAFGLQLIPHGRVCPDLETALAHFRFLDEQRRQMPYEIDGMVLKVNDL 305 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQK+LG +ARSPRW ++ KFA QA+T+L+ ++ Q+GRTG +TPVA LEPV +GG L++ Sbjct: 306 ALQKRLGAKARSPRWAVAAKFAAVQAATKLIGVEFQVGRTGAVTPVAVLEPVKVGGVLVS 365 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHNED IK +D+R+ D VLV+RAGEVIP+VV + ++R D +P Sbjct: 366 RATLHNEDEIKR-----------KDLRLHDTVLVQRAGEVIPEVVKPVADKRRGDEKPIQ 414 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C ++R A RC C AQ+L L HF S+ +I+GLGK+ Sbjct: 415 LPANCPECDHALIRKEGE------AVRRCPNPQ-CPAQRLRSLIHFCSKAGLDIDGLGKK 467 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ ++ + DI+ L+ Q + G+G+ S + D+I ++ Sbjct: 468 AVELLVQT----GLVGDIPDIYRLRPEQL------APLPGWGEKSAAKVCDAIAAAKSPK 517 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R + +LGIRHVG A+ LA+++ S + Q + + V +G +A Sbjct: 518 LARLLAALGIRHVGEVNAQVLARHFPSLEALQQAME----------EDFLEVEGIGSQVA 567 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++V F+++P + L + + ++N+ +FTG+L + R++A+ Sbjct: 568 ASLVTFFKDPTTTAMLAQLKELGLTISPEEQPAQQLPLQNRVFLFTGSLAGMSRNEAKAR 627 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 V +LG V+ L+RK ++ GD PGSKL KA++L ++I+ E F LL Sbjct: 628 VKELGGQVATGLNRKVTHLVCGDKPGSKLTKARELELEILTEADFARLL 676 >gi|320334549|ref|YP_004171260.1| DNA ligase [Deinococcus maricopensis DSM 21211] gi|319755838|gb|ADV67595.1| DNA ligase [Deinococcus maricopensis DSM 21211] Length = 671 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 221/708 (31%), Positives = 349/708 (49%), Gaps = 45/708 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 L Q I +H+ YY+ P I D+EYDAL R A A P+ P P K Sbjct: 3 EARYRELIQTIQHHNRLYYEQDTPEISDAEYDALMRELRAAEAAHPEWI---TPESPTQK 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NSIFFTLEPKIDG 136 +GG + + VTH P SL+ ++N E+L + ++ R D +T E KIDG Sbjct: 60 VGGAPSSAFQPVTHPTPMTSLDNVFNDEELTDWGAKLARALGAAPDTADYAYTCELKIDG 119 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + + Y G +AA RG+G GE V+ + IP IPR L E+ EVRGEVY+S+ Sbjct: 120 LSVNLYYVDGVLQWAATRGNGVVGEIVTEQVLTIPEIPRTLPGLKGEL-EVRGEVYLSRE 178 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQY 255 +F + N +G NPRN A+G LR+ +P + R L ++ LGK + A+ Q+ Sbjct: 179 EFASYNALAEELGLPLLKNPRNGAAGALRQKDPKETAKRRLRAILYALGKRDGVPARTQW 238 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 ++L + GFP + + +Y+ M + R+ LP+D DG V K+D+ Q+ Sbjct: 239 DVLTWLAEQGFPTSAYSERVQGLPAAAAYHARMVADRANLPFDADGTVIKLDDLRAQEDA 298 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +R+PRW I++KF ++ T+LL I I +GRTG L P+A LEP I G+ ++ ATLHN Sbjct: 299 GFTSRAPRWAIAYKFPVEEVQTKLLSITINVGRTGKLAPLAHLEPRLIEGSTVSKATLHN 358 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 ED+I+ L D+R+GD VLV++AG VIP++V + R ++PF FP+ CP Sbjct: 359 EDFIRNL-----------DLRIGDTVLVRKAGGVIPEIVRNLTELRADHSEPFEFPTHCP 407 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C VR A C AC AQ ERL++FVSR A +I GLG++ ++ Sbjct: 408 ECGHAAVRAEG------DANTYCVNP-ACPAQAYERLRYFVSRGAMDIRGLGEKLIEQLL 460 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + +R AD ++L Q + G N+ + + + L R + Sbjct: 461 Q----GGLVRDAADFYSLTEAQLAG------LERSGTKKAQNVLRELEESKKQPLWRLVN 510 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LG+ VG A+ L + + S + + VG+ +AQ++ Sbjct: 511 ALGMPGVGERNAQVLTRAFPSLDALLAATP----------EQIASIHGVGETLAQSVHAA 560 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + + L ++ + ++ V TGTL + R + ++ LGA Sbjct: 561 LHDATMTDLLGRLRAADLNTVEEVDAPQGEQLAGTTFVITGTLSR-PRDVFKAHLESLGA 619 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 +S +++KT ++ G++ GSKL+KA++ GV I++E LL + + Sbjct: 620 RISGSVTKKTTYLLAGEDAGSKLDKARENGVTILDEAALGALLTERDA 667 >gi|326797492|ref|YP_004315311.1| DNA ligase [Sphingobacterium sp. 21] gi|326548256|gb|ADZ76641.1| DNA ligase [Sphingobacterium sp. 21] Length = 672 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 205/714 (28%), Positives = 367/714 (51%), Gaps = 48/714 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + A + +L +E++ H+ YY ++P I D ++D A+ +P+ DP Sbjct: 1 MQRNDALSRIEALTKELNDHNYKYYVLAQPSISDFDFDQKLAELAALEKDYPEFL---DP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+GG++ V H P LSL ++ ++L+ F RI + + + E Sbjct: 58 DSPTQKVGGDITKQFKTVRHKWPMLSLSNTYSEKELKDFDERIRKVLG----DDFEYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGE 190 K DG I++ YE+G RGDG G++V++ I+ I ++P + + P++ E+RGE Sbjct: 114 LKFDGLSISLTYEQGVLTRGVTRGDGTQGDEVTSNIKTIKSVPNKIKSGHFPDLFEIRGE 173 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NFFVHGLGKTSE 248 V++ + F LN E + PYANPRN A+G ++ + +++ + F + Sbjct: 174 VFMHRAAFERLNKERLENDEIPYANPRNFAAGTIKLQDSSEVAKRPLDCFLYFLYMDNRD 233 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K +E L+ ++ GF V+ + T ++ + + R L YDIDG+V KV+ Sbjct: 234 RLFKTHWESLEAVKSWGFHVSEHTKLCRTIDEVLQFISYWDDARHKLSYDIDGIVIKVNS 293 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 ++ Q +LG A+SPRW I++K+ ++ T L + Q+GRTG +TPVA LEPV + G + Sbjct: 294 YAQQHELGFTAKSPRWAIAYKYKAEEVETILKSVSYQVGRTGAVTPVANLEPVQLSGTTV 353 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATLHN + I L D+ D V+V++ GE+IPK++ + ++R PD + Sbjct: 354 KRATLHNANEITRL-----------DLHELDTVMVEKGGEIIPKIIGVNKDKRVPDTKQI 402 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 ++P+ CP+C + ++R A H C L C Q + +++HF+SR A +IEG+G Sbjct: 403 AYPTHCPVCNTVLIRKEGE------AVHYCPNELGCPPQIVGKIQHFISRKAMDIEGMGN 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ +K ++ +D++ L ++ ++E I FG+ S+ N+ I K + Sbjct: 457 ETVEVLYKK----GLLKQISDLYQLHHHKE----ELEQIERFGEKSINNMLLGIQKSKER 508 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 ++ +F LGIR+VG IA+ LA + + N Q + V +G+ I Sbjct: 509 PFQKVLFGLGIRYVGETIAKKLANSFKNIDNLIQA----------SVEEIAAVDEIGERI 558 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKA 666 AQ++ E++ N ++ VE L E E+ S+++ +K V +G + R Sbjct: 559 AQSVKEYFSNTLHLHQVEILKGENLQFAIIEEEFQLNSNKLADKSFVISGVFEHYSREDL 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + + Q G + + +S K + ++ GDN G SKL KAQ+ + I++E + + ++Q Sbjct: 619 GKIIVQNGGKLLSGISAKLNYLVAGDNMGPSKLAKAQKFNIPIISEVELIKMIQ 672 >gi|104773603|ref|YP_618583.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|122984006|sp|Q1GBF7|DNLJ_LACDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|103422684|emb|CAI97297.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 671 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 207/714 (28%), Positives = 358/714 (50%), Gaps = 49/714 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S+E+A++E+ L ++ YY+ P++ D YD R + A+P+L + Sbjct: 4 SLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYPELK---SAD 60 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 ++GGE+N L KV H +P LS+ +++ E+L +F R+ + + + + +E Sbjct: 61 SITQRVGGEVNSDLPKVEHPVPMLSMGDVFSKEELAEFDQRVQKAIG----HPVAYNVEL 116 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG +++ YE+G A+ RG+G GEDV+ ++ I +P+ L I EVRGE Y Sbjct: 117 KIDGLSLSLEYEEGCLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGECY 174 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 +SK F LN E G +ANPRNAA+G LR+L+P + Sbjct: 175 MSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPPAGID 234 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q++ + +M LGF N R+ + Y +E R +LPY IDG+V KVD+ +LQ Sbjct: 235 SQHQAICEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDDLALQ 294 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 LG + PRW I++KF ++ T + +I+ +GRTG++TP A ++PV + G+ + A+ Sbjct: 295 ADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVRLAGSTVARAS 354 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D + L D+R+GD V + +AG++IP++ ++++++R D+ P+ P+ Sbjct: 355 LHNPDLLAKL-----------DVRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPYEVPT 403 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +V A RC +C AQ E + HF SR A NI GLG + + Sbjct: 404 KCPSCGEDLVHLDEE------VALRCINP-SCPAQVEEGITHFASRQAMNIAGLGPKIVK 456 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + + AD++ L + + F + S+ NL +I++ R S+E Sbjct: 457 QLIAKD----LVHNVADLYYLTADDLS------QLDHFKEKSINNLLVAIDQSRKNSVEL 506 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGI +VG + A+ +A+ + + A L + +G IA+++ Sbjct: 507 VLFGLGIDNVGGKAAQLIARKFKNMSKIASA----------SVQELTAIDTIGMTIAESL 556 Query: 613 VEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++Q + L + G + + + K +V TG L R + + + Sbjct: 557 TAYFQQEEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAEFTKKL 616 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 LGA V+ +S+KT+ ++ G++ GSKL KA+ L + + E + + +++ +T Sbjct: 617 QALGAKVTGSVSKKTNCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDTE 670 >gi|58336856|ref|YP_193441.1| DNA ligase [Lactobacillus acidophilus NCFM] gi|227903415|ref|ZP_04021220.1| DNA ligase [Lactobacillus acidophilus ATCC 4796] gi|75357942|sp|Q5FLL4|DNLJ_LACAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|58254173|gb|AAV42410.1| DNA ligase [Lactobacillus acidophilus NCFM] gi|227868891|gb|EEJ76312.1| DNA ligase [Lactobacillus acidophilus ATCC 4796] Length = 668 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 210/715 (29%), Positives = 366/715 (51%), Gaps = 51/715 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + +++++A+KE S L ++ D YY P + D+ YD R + FP++ Sbjct: 1 MADITLDEAKKEASLLRNQLDKWADAYYSKDAPEVEDNVYDQKYSRLLELEKQFPEIV-- 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ ++GGE++ KV H+IP LS+ +++ ++L+ F R+ + + + + Sbjct: 59 -TPDSITQRVGGEIDSDFTKVEHAIPMLSMGDVFSKDELKDFDQRMQKLVG----HPVEY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ YE GK + A+ RG+G+ GEDV+A R I IP+ L + IEVR Sbjct: 114 NVELKIDGLSLSLEYENGKLMRASTRGNGYVGEDVTANARYIADIPQTLPEPL--TIEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+ K F LN+E G +ANPRNAA+G LR+L+P + Sbjct: 172 GECYMGKEAFAKLNEERENEGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q+E +++M+ LGF N ++ + I ++ +E + R +L Y IDG+V K+D+ Sbjct: 232 EDITSQHEAIKRMQELGFHTNETGQKLASLEEIFAFIDEYTARRDSLAYGIDGIVLKIDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 ++++ LG + PRW I++KF ++ T + DI +GRTG++TP A ++PV + G + Sbjct: 292 LNIERSLGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTTV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A+LHN DY+ +D+R+GD V + +AG++IP++ ++++++R D+ P+ Sbjct: 352 ARASLHNPDYL-----------NEKDVRLGDTVKLHKAGDIIPEISEVVLSKRPVDSVPY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C ++V + A RC +C AQ E + HF SR A NI GLG Sbjct: 401 VIPENCPSCGHKLVHLQDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + ++ + AD++ L + F + S+ NL +I+ + Sbjct: 454 KIVKQLIAND----LVHNVADLYHLSAEDL------AQLDHFKEKSINNLLTAIDNSKKN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E I LGI HVGA+ AR +A+ + + L + +G I Sbjct: 504 SVELLITGLGIDHVGAKAARLIAQKFKNLAKIMSL----------GVQDLASIDTIGMTI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI----GRHEKNVSSEIENKKLVFTGTLQKIQRH 664 A+++ ++ P + L K E + ++K +V TG L+ R Sbjct: 554 AESMTTYFAQPEAQEMIADLEKSGLNMEYLGEDEPEDIPDNPFKDKTVVLTGKLEHYTRS 613 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + + LGA V+ +S+KT+ +I G + GSK KA+QLG+ ++ EE+ + ++ Sbjct: 614 EFTKRLQALGAKVTGSVSKKTNYVIYGQDAGSKYNKAEQLGIPLLTEEEAIAQIK 668 >gi|256852262|ref|ZP_05557648.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 27-2-CHN] gi|260661706|ref|ZP_05862617.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 115-3-CHN] gi|282934844|ref|ZP_06340077.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1] gi|297205571|ref|ZP_06922967.1| NAD-dependent DNA ligase LigA [Lactobacillus jensenii JV-V16] gi|256615308|gb|EEU20499.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 27-2-CHN] gi|260547453|gb|EEX23432.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 115-3-CHN] gi|281301075|gb|EFA93386.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1] gi|297150149|gb|EFH30446.1| NAD-dependent DNA ligase LigA [Lactobacillus jensenii JV-V16] Length = 669 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 215/716 (30%), Positives = 366/716 (51%), Gaps = 52/716 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + L+ + A++E+ +L ++++ + YY P + D+ YD ++ + FP+L Sbjct: 1 MAKLNKKNAQEEIETLRKKLNTWAEQYYAQDAPSVEDAVYDQNYQKLVELEKQFPELV-- 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ ++GGE+ L KV H +P LS+ +++ ++L +F RI + + + Sbjct: 59 -TPDSITQRVGGEIKSDLGKVEHQVPMLSMGDVFSKDELFEFDQRIQKLVG----GPVAY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ Y GK + A+ RG+G GEDV+ ++ I IP++L + EVR Sbjct: 114 NVELKIDGLSLSLEYVDGKLIQASTRGNGRIGEDVTKNVQYIDDIPKILPEKL--TTEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+ K FL LN E G +ANPRNAA+G LR+L+P + Sbjct: 172 GECYMGKAAFLKLNTERDENGEAIFANPRNAAAGSLRQLDPKVTKKRNLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ +Q+M LGF N R+ + +Y +E S R +L Y IDG+V KVD+ Sbjct: 232 KEITSQHQAIQQMSKLGFHTNETGRKLANLDEVFAYIDEYTSKRDSLSYGIDGIVLKVDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQKQLG + PRW I++KF ++ T + +I +GRTG++TP A ++PV + G + Sbjct: 292 LTLQKQLGNTVKVPRWEIAYKFPPEEQETIVHEIVWTVGRTGVVTPTAVMDPVELAGTTV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A LHN D +K +D+R+GD V + +AG++IP++ ++++++R ++Q + Sbjct: 352 SRAVLHNPDLLK-----------QKDVRIGDTVKLHKAGDIIPEISEVVLSKRPANSQVY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C +V A RC AC AQ E + HF SR A +I GLG Sbjct: 401 EIPTECPSCGQSLVHLEGE------VALRCINP-ACPAQIEEGIIHFASRPAMDIMGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + + ++ AD++ L + FGD S++NL +I+ R Sbjct: 454 KIVRQLIQHD----LVKDVADLYHLTADDL------AELDHFGDKSISNLLTAIDNSRQN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E + LGI HVGA+ A + + + + Q L + +G+ I Sbjct: 504 SVELLLNGLGIDHVGAKAALLIVQRFKNLNKIMQA----------SVSDLTAIDTIGETI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSP-----SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 A++I ++ V+ L+ E+ V + +NK +V TG L R Sbjct: 554 AESITTYFAQASVQKLVQELIDSGVNIDYLGEDVSEEEIVDNFFKNKTVVLTGKLAHFTR 613 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + + LGA V++ +S+KTD +I G + GSKL KA+ L + ++ EE+ + +Q Sbjct: 614 SEFTKKLESLGAKVTSSVSKKTDYVIYGTDAGSKLTKAESLKIALLTEEEAIEKIQ 669 >gi|319892947|ref|YP_004149822.1| DNA ligase [Staphylococcus pseudintermedius HKU10-03] gi|317162643|gb|ADV06186.1| DNA ligase [Staphylococcus pseudintermedius HKU10-03] Length = 667 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 238/714 (33%), Positives = 370/714 (51%), Gaps = 53/714 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + + L + + ++ Y+ P + DSEYD L I P+L S + Sbjct: 1 MSSIAQRVEILHKLLHQYNYEYHVQDNPSVPDSEYDKLLHELIDIETKHPELKTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N DLRKF R+ + + E K Sbjct: 58 PTVRVGGEAQSSFEKVNHDTPMLSLSNAFNEADLRKFDQRVRDAVG-----EVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++Y GK V RGDG +GED++ ++ I IP L I EVRGE Y+ Sbjct: 113 IDGLAVSLKYVDGKLVQGLTRGDGTTGEDITENLKTIYAIPLTLDKKIS--FEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + FL LN+ A +P+ANPRNAA+G LR+L+ R L+ F++ + +E+ A Sbjct: 171 PRQSFLKLNEAKAARDEQPFANPRNAAAGSLRQLDSKLAAARKLDIFLYSINDFTELDAS 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L ++ LGF N+ + T ++ Y + + R LPYDIDG+V KV+ Q Sbjct: 231 SQSEALDELDELGFKTNHEREKVKTIDEVLEYIKKWTNQREQLPYDIDGIVIKVNHLEHQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +++G +SPRW I++KF ++ T LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 EEMGFTQKSPRWAIAYKFPAEEVITELLDIELSIGRTGVVTPTAILEPVRVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I +DIR+GD V++K+AG++IP+VV +I++ R A+ + P+ Sbjct: 351 LHNEDLIH-----------EKDIRIGDSVVIKKAGDIIPEVVRVILDRRPEGAETYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + ++ Sbjct: 400 HCPSCDHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIE 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + I+ ADIF L + + G+ L D+I + SLE Sbjct: 453 QLYTHA----LIKDVADIFYLTKEDL------LPLERMGEKKAQKLIDAIETSKARSLEN 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + L+ + VG+ +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETMDRLLTVTE----------DELVEIYDVGEKLAQSL 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSS--EIENKKLVFTGTLQKIQRHKAQE 668 V + +N +E L + + +K + E K +V TG LQ++ R++A Sbjct: 553 VTYLENEDIRALIEKLQSKGVNMTFKGQKLSQIEGHPEFAGKTIVLTGKLQQMTRNEATN 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 ++ GA V++ +++ TD++I G++ GSKL KAQ LG I E+ F+ + N Sbjct: 613 WLKLQGAKVTSSVTKSTDLVIAGEDAGSKLTKAQSLGTMIWTEQDFIDKQNEIN 666 >gi|322375289|ref|ZP_08049802.1| DNA ligase, NAD-dependent [Streptococcus sp. C300] gi|321279552|gb|EFX56592.1| DNA ligase, NAD-dependent [Streptococcus sp. C300] Length = 652 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 215/700 (30%), Positives = 358/700 (51%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + ++ L ++ + YY P + DSEYD L R + A+PD + + P +++ Sbjct: 3 ERMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLA---DSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 60 GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKEL-----PQPTYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YEKG V A RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 115 ISLTYEKGVLVVGATRGDGSVGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q ++L Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKVL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN A + I + E+ R LPYDIDG+V KV++ + Q++LG Sbjct: 232 EHLEQLGFVVNPKRILAKSIDEIWDFIQEVGQEREKLPYDIDGVVIKVNDLAGQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR GD V+V +AG++IP V+ ++ ++R + + PS CP C Sbjct: 352 I-----------AEKDIRKGDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPSNCPSCD 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S ++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 400 SHLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A ++ ADI+ L+ + G + S + LY +I + S E+ +F LG Sbjct: 450 -AANLVKDVADIYRLKEEDF------LLLEGVKEKSASKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG++ ++ L +++ S +N AQ D + + +G +IAQ++ ++ Sbjct: 503 IRHVGSKASQLLLQHFHSIENLAQA----------DPEEVASIESLGGVIAQSLQTYFAT 552 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + ++ L + + + + +V TG L+++ R +A+ + LGA V Sbjct: 553 EGSKILLDELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLTRSEAKSKLESLGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KT++++ G + GSKL+KAQ+LG+++ +E L Sbjct: 613 TGSVSKKTNLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652 >gi|284042834|ref|YP_003393174.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684] gi|283947055|gb|ADB49799.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684] Length = 684 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 224/725 (30%), Positives = 358/725 (49%), Gaps = 50/725 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + + L +E++YH YY P I D YDAL A+ A P+L P Sbjct: 1 MSAGPDAQRAAVLRRELAYHGHRYYDLDDPEIGDDAYDALLDELRALEAAHPELL---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK--DDNSIFFT 129 + P ++GG + L KV H LSL + ++L ++ R+ ++ +D + Sbjct: 58 DSPTQRVGGAVVSELRKVRHRRRMLSLANARSEQELLAWVERMRAHLAREGIEDPRFEYV 117 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 +EPK+DG +++ YE G + RGDG GEDV+ IR I IP+ + P +EVRG Sbjct: 118 VEPKVDGLAMSLHYENGTLIRGVTRGDGEIGEDVTHNIRTIEQIPQQIDGA-PAWLEVRG 176 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EVY+S DF ALN GR + NPRN+A+G +R+L+ R L+ + +G+G+T Sbjct: 177 EVYMSLADFEALNLRRAEEGRSTFMNPRNSAAGTIRQLDSRLAAERPLSMWCYGIGETEG 236 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 I +E LQ +R GFPVN+ +R+ T +V+ + R +L ++IDG+V KVD+ Sbjct: 237 ISFSTHWESLQWLRAHGFPVNDEIRRIRTAEKVVARCERWQERRGSLDFEIDGVVVKVDD 296 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 LQ++LG R PRW I+ KF A T+L D+ +G+ G L P A LEPV++GG + Sbjct: 297 VELQRRLGVVGRDPRWAIAWKFPPTTAVTQLHDVMWNVGKFGTLHPFAVLEPVHVGGVTV 356 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV--VDIIVNERHPDAQ 426 ATLHNE+ + +D+R GD V+V RAG+VIP+V V ER A Sbjct: 357 KLATLHNEEDLAR-----------KDVRPGDDVIVLRAGDVIPQVLSPAPHVAERSDRAP 405 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ CP+C + V+ C ++ + L+H+VSR A +++G+ Sbjct: 406 VPRPPARCPVCDTPTVKGEG--------VFTKCPNRDCPGRRWQLLQHYVSRGAMDVDGI 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++Q+ + +R P D + L Q + FG+VS N ++I + Sbjct: 458 GEKQVSVLMEH----GLLRTPGDYYRLSAEQLM------QLDRFGEVSARNAVEAIAASK 507 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 R +F LGI VG+ RSLA+ + + + P +G Sbjct: 508 ERPFGRVLFGLGIEGVGSVTGRSLAQRFRTIDALTAA----------SAEEIAATPGIGP 557 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I+ + I + ++ ++ L + +K +V TGTL + R +A Sbjct: 558 IVGRLIHDQLRDEHLRAVIDDLRAHGVRMEEDGPPPGEGPLADKAIVLTGTLPTLTREEA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 E + G V++ +SR+TD ++ G+ G+KLEKA++L V +++E+ LL+ Sbjct: 618 TERILAAGGRVTSSVSRRTDYVVAGERAGTKLEKAERLRVPVLDEDGLEALLRGAGDAGA 677 Query: 727 IHDDD 731 +DD Sbjct: 678 --EDD 680 >gi|323464000|gb|ADX76153.1| DNA ligase, NAD-dependent [Staphylococcus pseudintermedius ED99] Length = 667 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 238/714 (33%), Positives = 370/714 (51%), Gaps = 53/714 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + + L + + ++ Y+ P + DSEYD L I P+L S + Sbjct: 1 MSSIAQRVEILHKLLHQYNYEYHVQDNPSVPDSEYDKLLHELIDIETKHPELKTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N DLRKF R+ + + E K Sbjct: 58 PTVRVGGEAQSSFEKVNHDTPMLSLSNAFNEADLRKFDQRVRDAVG-----EVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++Y GK V RGDG +GED++ ++ I IP L I EVRGE Y+ Sbjct: 113 IDGLAVSLKYVDGKLVQGLTRGDGTTGEDITENLKTIYAIPLTLDKKIS--FEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + FL LN+ A +P+ANPRNAA+G LR+L+ R L+ F++ + +E+ A Sbjct: 171 PRQSFLKLNEAKAARDEQPFANPRNAAAGSLRQLDSKLAAARKLDIFLYSINDFTELDAS 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L ++ LGF N+ + T ++ Y + + R LPYDIDG+V KV+ Q Sbjct: 231 SQSEALDELDELGFKTNHEREKVKTIDEVLEYIKKWTNQREQLPYDIDGIVIKVNHLEHQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +++G +SPRW I++KF ++ T LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 EEMGFTQKSPRWAIAYKFPAEEVITELLDIELSIGRTGVVTPTAILEPVRVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I +DIR+GD V++K+AG++IP+VV +I++ R A+ + P+ Sbjct: 351 LHNEDLIH-----------DKDIRIGDSVVIKKAGDIIPEVVRVILDRRPEGAETYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + ++ Sbjct: 400 HCPSCDHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIE 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + I+ ADIF L + + G+ L D+I + SLE Sbjct: 453 QLYTHA----LIKDVADIFYLTKEDL------LPLERMGEKKAQKLIDAIETSKARSLEN 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + L+ + VG+ +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETMDRLLTVTE----------DELVEIYDVGEKLAQSL 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSS--EIENKKLVFTGTLQKIQRHKAQE 668 V + +N +E L + + +K + E K +V TG LQ++ R++A Sbjct: 553 VTYLENEDIRALIEKLQSKGVNMTFKGQKLSQIEGHPEFAGKTIVLTGKLQQMTRNEATN 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 ++ GA V++ +++ TD++I G++ GSKL KAQ LG I E+ F+ + N Sbjct: 613 WLKLQGAKVTSSVTKSTDLVIAGEDAGSKLTKAQSLGTMIWTEQDFIDKQNEIN 666 >gi|255533202|ref|YP_003093574.1| DNA ligase, NAD-dependent [Pedobacter heparinus DSM 2366] gi|255346186|gb|ACU05512.1| DNA ligase, NAD-dependent [Pedobacter heparinus DSM 2366] Length = 670 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 212/712 (29%), Positives = 366/712 (51%), Gaps = 46/712 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + + + +L +E++ H YY + P I D +D + A+P+ A DP Sbjct: 1 MSGSEVKTNMDALVKELNQHSYNYYVLAMPTIADYTFDKKLEELAQLELAYPEFA---DP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P K+GG++ V H P LSL +N +DLR F RI + + S + E Sbjct: 58 NSPTRKVGGDITKIFTTVPHKWPMLSLGNTYNEQDLRDFDERIKKAIGE----SFEYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 K DG I++ Y+ K V A RGDG G+DV+A ++ I TIP ++P + E+RGE Sbjct: 114 LKFDGLSISLTYDGSKLVRAVTRGDGAKGDDVTANVKTINTIPHQLKEGDVPPLFEIRGE 173 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + F LN E +G YANPRN A+G ++ + ++ + T + + Sbjct: 174 IFMHRAAFERLNKEREELGEVQYANPRNFAAGTVKMQDSKEVAKRPLDCFLYSLNTDKNY 233 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K +E LQ ++ GF V + N+ + S+ ++ R L YDIDG+V KV+ ++ Sbjct: 234 FKTHWESLQALKRWGFNVCEHTKLTNSIEDVRSFIKHWENERFKLSYDIDGIVIKVNSYA 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG A+SPRW IS+K+ ++ T L + Q+GRTG +TPVA L+PV + G + Sbjct: 294 QQQELGFTAKSPRWAISYKYKAQEVETILDKVTYQVGRTGAVTPVANLKPVQLAGTTVKR 353 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN + I+ L D+ GD V V++ GE+IPK++++ +++R A + Sbjct: 354 ATLHNANEIERL-----------DLHEGDSVFVEKGGEIIPKIMNVNLDKRKAGALKIIY 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C + ++R A C AC Q + +++HF+SR A NI+GLG + Sbjct: 403 PTVCPECATPLIRKEGE------VAFYCPNDEACPPQIIGKIQHFISRKAMNIDGLGDET 456 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F++ I +D++TL + +++ + FG+ S+ N+ I + + Sbjct: 457 IETFYQR----GLIAHISDLYTLHEK----AEELKTLERFGEKSIENMLHGIELSKQMPF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E+ +F LGIR+VG +A+ LA + A L + +G IA+ Sbjct: 509 EKVLFGLGIRYVGETVAKKLAYGVKNVDKLASA----------SLEELTAIDEIGQRIAE 558 Query: 611 AIVEFYQNPRNICAVEALLKE-VSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQE 668 +I+E++ ++ + L + + +E S ++ K V +G + R + ++ Sbjct: 559 SIIEYFGKAEHLHQINLLKSYNLKFEVAENEITLQSDKLTGKTFVISGVFENYSREELKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + G + + +S K + ++ GDN G SKLEKA++L V ++++E L LL+ Sbjct: 619 MIESNGGKILSGISAKLNYLVAGDNMGPSKLEKAKKLNVPLISQEDLLELLK 670 >gi|326330727|ref|ZP_08197031.1| DNA ligase, NAD-dependent [Nocardioidaceae bacterium Broad-1] gi|325951568|gb|EGD43604.1| DNA ligase, NAD-dependent [Nocardioidaceae bacterium Broad-1] Length = 702 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 214/731 (29%), Positives = 354/731 (48%), Gaps = 57/731 (7%) Query: 10 EALSIE---QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + L+ E + + E L ++I YY P + D+++D RR + + FP+L Sbjct: 3 DDLTAEAGPEQKSEHQELAEQIEDARYRYYVLDDPTLSDADFDQKWRRINELEEQFPEL- 61 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P+ P K+GG + V H SL+ +++ E+L + RI + Sbjct: 62 --RTPDSPTQKVGGTFSTEFTAVDHLQRMESLDNVFSFEELAGWHARIAK----DGAGQA 115 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----P 182 E K+DG I + YEKG+ V A RGDG +GEDV+ +R I +IP L+ P Sbjct: 116 ELLCELKVDGLAINLLYEKGRLVRALTRGDGRTGEDVTPNVRTIKSIPHRLTGTDEFPVP 175 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 +++EVRGEV++S F LN ++ G+ +ANPRN+A+G LR+ +P TR L H Sbjct: 176 DLVEVRGEVFLSIEVFDKLNASLVDAGKPMFANPRNSAAGSLRQKDPRVTATRELGMVCH 235 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM-KSIRSTLPYDID 300 G+G Q ++ G P +N V+ T + + + + ++ID Sbjct: 236 GIGAREGFQPVAQSHAYDALKAWGLPTSNRVKVLKTLQEVEEFISYFGEHRHDVTEHEID 295 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V KVD+ SLQ++LG +R+PRW I++K+ ++ + +LL ID+ +GRTG +TP +EP Sbjct: 296 GVVIKVDDISLQRRLGSTSRAPRWAIAYKYPPEEVNAKLLAIDVGVGRTGRVTPFGVMEP 355 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 + G+ + ATLHN +K +D+R GD +++++AG+VIP+++ ++ Sbjct: 356 TKVAGSTVERATLHNAHEVKR-----------KDVRPGDTIILRKAGDVIPEILGPVLPL 404 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R + P+ CP C + + + + RC C AQ ER+ R A Sbjct: 405 RPEGLPEWVMPTECPACGTTLA-----EQKEGDKDLRCPNHRGCPAQVRERVFFASGRGA 459 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR-----------QQTSTTKIENILG 529 F+IEG+G + + A I DIF L + + + Sbjct: 460 FDIEGMGYEA----ADALLAAEVITNEGDIFDLDEAGLATTTFFTRAAKKAEKEAGAGDR 515 Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 + + L ++ +R+++ L R + +L IRHVG AR+LA + S Sbjct: 516 VLNANALGLLRNLEERKHVPLWRVLVALSIRHVGPSAARALATEFGSLDAIWAASQ---- 571 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN 649 L VG IIA+AIVE+ Q + V+ +++V+ +E Sbjct: 572 ------EELAATEGVGGIIAEAIVEWRQVDWHQEIVDKWRAAGVSLADERDESVARTLEG 625 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 +V TG+L+ R A+E + G + +S+KTD ++VGDN GSK KA++LG+ I+ Sbjct: 626 LTVVVTGSLEDFSRDGAKEAIISRGGKAAGSVSKKTDYVVVGDNAGSKAAKAEELGLPIL 685 Query: 710 NEEQFLFLLQQ 720 +E F LL+ Sbjct: 686 DEAAFKVLLED 696 >gi|110597868|ref|ZP_01386151.1| DNA ligase, NAD-dependent [Chlorobium ferrooxidans DSM 13031] gi|110340593|gb|EAT59076.1| DNA ligase, NAD-dependent [Chlorobium ferrooxidans DSM 13031] Length = 674 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 236/711 (33%), Positives = 362/711 (50%), Gaps = 50/711 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 A +E+ L +EI H+ YYQ +KP I D ++D L + A+ FPDL P+ P Sbjct: 6 SASEEILRLRREIERHNRLYYQEAKPEISDYDFDLLLEQLVALEQQFPDLV---TPDSPS 62 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + V H P LSL ++ E++ +F R+ + + E K D Sbjct: 63 QRVGGTITKEFTAVRHREPMLSLSNTYSPEEVEEFCNRLRKLLLLEGVQEQEMVAELKFD 122 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-------IIEVR 188 G +T+ Y V A RGDG G++++ ++ I TIP L ++ IEVR Sbjct: 123 GVAVTLLYRDALLVQGATRGDGVQGDNITVNLKTIATIPLRLEGSLAGELQGEGREIEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GEVY+ K DF LN+ +ANPRNA +G L+ + ++ R FV K Sbjct: 183 GEVYMPKLDFEHLNETRPE--EDRFANPRNATAGTLKLQDSAEVARRRLSFVAYYLKGLG 240 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + L+ + LGF R + I + E R LPY+ DG+V K+++ Sbjct: 241 DETASHFSRLKMLERLGFHTGGHYRLCREQNEINRFIEEWTERRWKLPYETDGVVLKLND 300 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 L ++G A+SPRW I++K+ +QA+T LLD+ Q+GR G +TPVA L+PV + G+ + Sbjct: 301 VRLWDKIGATAKSPRWAIAYKYPAQQAATELLDVLFQVGRLGTITPVAELKPVLLAGSTV 360 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + +TLHN D I+ L + V DRV++++AGEVIPKV+ +++ ER DA+P Sbjct: 361 SRSTLHNFDEIERL-----------GLMVHDRVVIEKAGEVIPKVISVVLAERPVDAEPI 409 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 + P CP C + + + N + C C AQ RL HF SR+A +I+ LGK Sbjct: 410 AVPVVCPECNTPLEKPENE------VSWYCPNEAECPAQIRGRLLHFASRNAMDIKTLGK 463 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 +D + +R D++ LQ Q +EN+ G S NL ++ + R Sbjct: 464 ALVDQLVGMK----LVRDVGDLYLLQEPQ------LENLERMGRKSAQNLVRALAESREK 513 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S ER +++LGIRHVG AR L+ Y S Q L VP VG I+ Sbjct: 514 SYERLLYALGIRHVGRATARELSAAYPSLDLLRQASE----------EELSTVPDVGPIV 563 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 A++IV+F+ P + E L + S + V+ E ++FTG L++ R KA Sbjct: 564 ARSIVDFFAKPSSAALFETLREAGVQVSAAGKPEQVNRNFEGISVIFTGGLERYDRQKAT 623 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 E V + G V +S+KT +++ G +PGSKLEKA +LGV+++ E++F +L Sbjct: 624 ELVIERGGRVVGSVSKKTGLVVAGHDPGSKLEKALKLGVRVVTEDEFDAML 674 >gi|238855396|ref|ZP_04645707.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 269-3] gi|260665363|ref|ZP_05866211.1| DNA ligase, NAD-dependent [Lactobacillus jensenii SJ-7A-US] gi|282932093|ref|ZP_06337550.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1] gi|238831994|gb|EEQ24320.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 269-3] gi|260560867|gb|EEX26843.1| DNA ligase, NAD-dependent [Lactobacillus jensenii SJ-7A-US] gi|281303772|gb|EFA95917.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1] Length = 669 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 218/716 (30%), Positives = 364/716 (50%), Gaps = 52/716 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + L+ + A++E+ +L ++++ + YY P + D+ YD +R + FP+L S Sbjct: 1 MAKLNKKAAQEEIENLRKKLNTWAEQYYAQDAPSVEDAVYDQNYQRLVELEKQFPELVTS 60 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + ++GGE+ L KV H IP LS+ +++ ++LR+F RI + + + Sbjct: 61 ---DSITQRVGGEIKSDLGKVEHQIPMLSMGDVFSKDELREFDQRIQKLVG----GPVAY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ Y GK V A+ RG+G GEDV+ ++ I IP+ L + +EVR Sbjct: 114 NVELKIDGLSLSLEYSDGKLVRASTRGNGRIGEDVTKNVQYISDIPKTLPEAL--TMEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+ K FL LN E G +ANPRNAA+G LR+L+P + Sbjct: 172 GECYMGKEAFLKLNTERDENGEAVFANPRNAAAGSLRQLDPQVTKKRNLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ +Q+M LGF N ++ G+ +Y +E S R +L Y IDG+V KVD+ Sbjct: 232 KEITSQHQAIQQMAKLGFHTNETGKRLANLDGVFAYIDEYTSKRDSLSYGIDGIVLKVDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQKQLG + PRW I++KF ++ T + +I +GRTG++TP A ++PV + G + Sbjct: 292 LTLQKQLGNTVKVPRWEIAYKFPPEEQETIVHEIVWTVGRTGVVTPTAVMDPVELAGTTV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A LHN D +K +D+R+GD V + +AG++IP++ ++++++R D++ + Sbjct: 352 SRAVLHNPDLLK-----------QKDVRIGDTVRLHKAGDIIPEISEVVLSKRPVDSKVY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C +V A RC AC AQ E + HF SR A +I GLG Sbjct: 401 EIPDKCPSCGQALVHLEGE------VALRCINP-ACPAQIEEGIIHFASRPAMDIMGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + ++ AD++ L + FGD S+ NL +I+ R Sbjct: 454 KIVRQLIQHN----LVKDIADLYHLTADDL------AELDHFGDKSINNLLTAIDNSRQN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E + LGI HVGA+ A + + + + Q L + +G+ I Sbjct: 504 SVELLLNGLGIDHVGAKAALLIVQRFKNLNKIMQA----------SVSELTAIDTIGETI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSP-----SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 A++I ++ V+ L+ +E+ + +NK +V TG L R Sbjct: 554 AESITTYFAQASVQKLVQELIDSGVNIDYLGEDVSNEEIADNFFKNKTVVLTGKLAHFTR 613 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + + LGA V+ +S+KTD +I G + GSKL KA+ L + ++ EE+ + +Q Sbjct: 614 SEFTKKLESLGAKVTGSVSKKTDYVIYGTDAGSKLTKAESLQIALLTEEEAIEKIQ 669 >gi|242371787|ref|ZP_04817361.1| DNA ligase [Staphylococcus epidermidis M23864:W1] gi|242350488|gb|EES42089.1| DNA ligase [Staphylococcus epidermidis M23864:W1] Length = 667 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 240/714 (33%), Positives = 376/714 (52%), Gaps = 53/714 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++ ++ L ++ + YY P + DSEYD L I P+ + + Sbjct: 1 MEDLQRRVNELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIETEHPEYKTA---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N EDLRKF RI ++ + E K Sbjct: 58 PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRENIG-----NVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++Y+ GKFV RGDG +GED++ +R I IP + + EVRGE Y+ Sbjct: 113 IDGLAVSLKYQDGKFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLN--FEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + F+ LN + G +P+ANPRNAA+G LR+L+ R L+ F++ + ++ A Sbjct: 171 PRRSFMNLNKQKEENGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDFTDFNAT 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q L ++ LGF N + + G++ Y + R +L YDIDG+V KV++ Q Sbjct: 231 TQSGALNELDQLGFKTNQERERVSDIEGVLKYIEKWTDKRESLSYDIDGIVIKVNDLDQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +++G +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVRVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V+VK+AG++IP+VV I++ R DA+ + P+ Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVVKKAGDIIPEVVKSILDRRPDDAETYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLIEGLIHFVSRQAMNIDGLGTKIIQ 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 +++E I+ ADIF LQ + G V NL +I K ++ S E Sbjct: 453 QLYENE----LIKDVADIFYLQEEDL------LPLERMGTKKVENLLAAIEKAKDNSFEH 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + + L+ + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETMDRLLEVTEA----------ELVEIHDIGDKLAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668 V + +N ++ L + + K E K +V TG L+++ R +A + Sbjct: 553 VTYLENEDIRALIQKLKDKNVNMSYKGIKTTEIEGHPEFSGKTIVLTGKLEQMTRSEASQ 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 ++ GA V+ +++ TDI+I G + GSKL KA++ G +I EE+F ++ N Sbjct: 613 WLEMQGAKVTNSVTKSTDIVIAGADAGSKLTKAEKFGTEIWTEEEFANKQKELN 666 >gi|319779225|ref|YP_004130138.1| DNA ligase [Taylorella equigenitalis MCE9] gi|317109249|gb|ADU91995.1| DNA ligase [Taylorella equigenitalis MCE9] Length = 681 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 259/711 (36%), Positives = 386/711 (54%), Gaps = 48/711 (6%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 +L+ IS HD YY P I D EYD L R+ A P+ S + P ++GG Sbjct: 9 YEALKSLISVHDKAYYIDDNPQISDEEYDGLMRKLLDYEQAHPEWVTS---DSPSQRVGG 65 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 V H++P LSL ++N E+L F R+ D F EPK DG I+ Sbjct: 66 VALKIFNSVRHAVPMLSLGNVFNPEELTAFYNRMVEAVGSDD---FEFNCEPKFDGLAIS 122 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP----RVLSLNIPEIIEVRGEVYISKN 196 IRYE G A+ RGDG +GEDV+A + I T+P +P+IIEVRGE + ++ Sbjct: 123 IRYENGVLKTASTRGDGLTGEDVTAQVSTIRTVPLKLNVPSKEALPKIIEVRGEALMLRS 182 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE---IFAK 252 DF L G + +ANPRNAA+G LR+L+P R L F+ +GLG+ K Sbjct: 183 DFDNLVKRQEEEGLQTFANPRNAAAGSLRQLDPKITAKRKLRFYAYGLGEFKSLGSEEPK 242 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q ++L + LGF V G+++++ +K+ R TLP+DIDG+VYKVD F LQ Sbjct: 243 SQSQLLDYLSELGFAVTEYRSVKKGLDGLLNFFEHIKAKRDTLPFDIDGVVYKVDSFELQ 302 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +++G +++PR+ I+HKFA +Q T+LLDI++Q+GRTG LTPVARLEPV +GG + AT Sbjct: 303 QKIGFVSKAPRFAIAHKFAAEQMQTKLLDIEVQVGRTGALTPVARLEPVFVGGVTVRKAT 362 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I+ +++ +GD V+V+RAG+VIP+V++ +++ R DA F P+ Sbjct: 363 LHNEDEIER-----------KNLMIGDTVIVRRAGDVIPEVLESVIDLRPEDAVKFVMPT 411 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S V + A RCTGGL C AQ + + H VSR A NIEGLG + + Sbjct: 412 ICPVCGSAVEKPEGE------AVARCTGGLVCGAQITQGIIHAVSRKALNIEGLGDKHIQ 465 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 +E I+ D+F L + +V L+ I ++ +L R Sbjct: 466 KLVSTEK----IKRLDDLFKLTVDDLNILGRNAE-DSKLEVLAPTLHARIQASKSTTLSR 520 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+F+LGIRHVG AR LAKY+ + Q L+ VP VG+++A +I Sbjct: 521 FLFALGIRHVGETTARDLAKYFGDLYSIMQA----------STEELVSVPNVGEVMATSI 570 Query: 613 VEFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ P N + LL+ + ++ I V TGTL+ +R + + + Sbjct: 571 HTFFNEPHNREVISNLLELGFVLNAEEEAIQINPAIAGHSFVVTGTLENWKRDEISQVII 630 Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQY 721 G +++ +S+KTD +++G PG SK++KAQ++G KI++E +F+ +L+Q Sbjct: 631 SSGGRINSSVSKKTDYLLMGAEPGDSKVKKAQEVGTKILSEAEFIQMLEQK 681 >gi|297191909|ref|ZP_06909307.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486] gi|197721112|gb|EDY65020.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486] Length = 736 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 220/736 (29%), Positives = 348/736 (47%), Gaps = 61/736 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 QAR+E + L ++I H YY P+I D+E+D L R + + +P+L P+ Sbjct: 19 PAQAREEHALLAEQIEEHRFRYYVKDSPVISDAEFDKLLRELEGLEERYPEL---RTPDS 75 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+ G+ L KV H LSL+ ++ +L + R+ R + F E K Sbjct: 76 PTQKVAGDYETELTKVEHRERMLSLDNAFDDAELAAWAERVARDVGAPGYH---FLCELK 132 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192 +DG + + YEKG+ AA RGDG GED++ R I IP L + +E+RGEVY Sbjct: 133 VDGLAVNLTYEKGRLTRAATRGDGRVGEDITPNARTIAGIPDRLGGDRIPRLVEIRGEVY 192 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 F LN +A G +PYANPRN+ASG LR+ +P T L VHG+G + Sbjct: 193 FPMEQFQELNARRVAAGEQPYANPRNSASGSLRQKDPKVTATLPLRMVVHGIGAREGLTI 252 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + +R G P + + + + R ++ ++IDG+V K+DE L Sbjct: 253 DRLSQAYDLLREWGLPTARHNKVVGSLEEVREFIAYFGEHRHSVEHEIDGVVVKLDEIPL 312 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG AR+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ + A Sbjct: 313 QGRLGSTARAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVTVAGSEVEFA 372 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+D +K + + +GD V++++AG+VIP+++ +V+ R + F P Sbjct: 373 TLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMP 421 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK--- 488 + CP C + + + RC +C AQ ERL + R A +IE G Sbjct: 422 AECPECGTALRPM-----KEGDVDLRCPNARSCPAQLRERLFYLAGRKALDIEHFGYVAA 476 Query: 489 ---------------QQLDFFFKSEDPAFSIRIP--ADIFTLQRRQQTSTTK-----IEN 526 + D F + + I+ L +R + N Sbjct: 477 AALTQPLEPAEPPLVDEGDLFDLTMEQLLPIKAYVLDQDSGLPKRDPKTGEDKIATVFAN 536 Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 G + + ++I + L R I L IRHVG A +LA+ + S Q Sbjct: 537 QKGEPRRNAVAMLENIAAAKERPLARIITGLSIRHVGPVAAEALAREFRSIDRIEQATE- 595 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG--RHEKNVS 644 L V VG IA A+ ++++ + + + E Sbjct: 596 ---------EELAAVDGVGPTIAAALKQWFEEDWHREILRKWRAAGVRTEEHGSGEDAGP 646 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 +E +V TGTL+ R A+E + LGA V+ +S+KT ++VGDNPGSK +KA QL Sbjct: 647 RPLEGLTVVVTGTLENHTRDGAKEALQSLGAKVAGSVSKKTSFVVVGDNPGSKYDKAVQL 706 Query: 705 GVKIMNEEQFLFLLQQ 720 V +++E F LL++ Sbjct: 707 KVPVLDESGFAVLLEE 722 >gi|227523032|ref|ZP_03953081.1| NAD-dependent DNA ligase [Lactobacillus hilgardii ATCC 8290] gi|227089850|gb|EEI25162.1| NAD-dependent DNA ligase [Lactobacillus hilgardii ATCC 8290] Length = 675 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 238/719 (33%), Positives = 371/719 (51%), Gaps = 53/719 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E ++ +QA L ++++ D YY Y P + DS YD ++ + FP + Sbjct: 4 EDMTEQQAESAARELREKLNKWADEYYTYDSPSVEDSVYDQTYQQLVDLETTFPQIV--- 60 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P K+G KV H IP LSL +++IE+L+ F R + + Sbjct: 61 TPDSPTQKVGDHTLPGFTKVPHEIPMLSLGDVFSIEELKAFADR----LSDSESVPFEYN 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG I++RYE G V A RG+G GED++ ++ I +IP L+ P IEVRG Sbjct: 117 CELKIDGLAISLRYEDGILVQGATRGNGQIGEDITRNLKTIKSIP--QRLSRPINIEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 E Y+ K F+ LN + G P+ANPRNAA+G LR+L+ R L+ F++ + + Sbjct: 175 ECYMPKESFVELNQQRQVEGVAPFANPRNAAAGSLRQLDSRVTAHRKLSTFMYNVANYDD 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + Q ML++++ LGF +N+ + A+ I Y R TL Y IDG+V KV+ Sbjct: 235 LESDTQSGMLEELKKLGFTINSDYQVAHNMDDIDQYVERYTKQRDTLAYGIDGIVIKVNS 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 LQ+ LG + PRW I++KF ++A T + DI+ +GRTG++TP A ++ V + G + Sbjct: 295 LPLQRSLGATVKVPRWAIAYKFPPEEAETTVRDIEWTVGRTGVVTPTAVMDEVTLAGTTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN DY++ +DIR+GD V + +AG++IP++ + ++R D+QP+ Sbjct: 355 SRASLHNPDYLQ-----------EKDIRIGDTVRLHKAGDIIPEISTYVKDKRQVDSQPY 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C S +V A RC C AQ E L HF SRDA NI+GLG Sbjct: 404 EIPTECPSCGSELVHLDEE------VALRCINPQ-CPAQLKEGLTHFASRDAMNIDGLGP 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + FK + A ++ L Q + + FG+ S NL +I+ RN Sbjct: 457 KIIGQLFKK----HMLTDVAGLYGLTFDQLMT------LDKFGEKSAGNLLAAIDNSRNN 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S ER +F LGIRHVGA+ AR +A+ + + + + +G II Sbjct: 507 SCERLLFGLGIRHVGAKAARLIAQRFKNIDKVMDAT----------AQEIAEIDTMGMII 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI-----GRHEKNVSSEIENKKLVFTGTLQKIQR 663 A ++V ++ P++ + L + K S K+LV TG LQ I R Sbjct: 557 ADSVVTYFSMPQSKELISQLKQVGVNMDYLGATDEALKESDSVFNGKRLVLTGKLQHITR 616 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 +A ++ GA VS +S+KTDI++VG++PGSK +KA+ LG+ + +E +F + Sbjct: 617 PEATRWLENHGAKVSGSVSKKTDIVVVGEDPGSKYDKARNLGIDVWDENRFAEAMADEK 675 >gi|87301433|ref|ZP_01084273.1| DNA ligase [Synechococcus sp. WH 5701] gi|87283650|gb|EAQ75604.1| DNA ligase [Synechococcus sp. WH 5701] Length = 698 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 222/734 (30%), Positives = 349/734 (47%), Gaps = 65/734 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R L + ++ YY P + D+ YD L R + + P+L P+ P + Sbjct: 2 RALAEELRRLLNRAAHAYYVLDSPEMEDAVYDRLYRELEQLERLHPELI---SPDSPTRR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-----SIFFTLEP 132 +GG V H I LSLE ++IE+L + R+ + + ++ E Sbjct: 59 VGGSPAEGFQAVRHRIGLLSLENAFSIEELEAWYGRLLKVLDRSAPPGEALPALPMVGEL 118 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEV 191 KIDG + + YE G V AA RGDG SGE+++A +R I ++P L + PE +EVRGE Sbjct: 119 KIDGNALALSYEHGLLVRAATRGDGESGEEITANVRTIQSVPLRLLLEDPPEWVEVRGEA 178 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL------- 243 I F +N E G +ANPRNA +G LR+L+P R L+FF + L Sbjct: 179 LIPDGTFAEINAERAGRGEPLFANPRNACAGTLRQLDPQVVAARRLDFFAYTLHLPDDWR 238 Query: 244 ---GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 G + Q+E L+ + GF VN + +++ + R LPY D Sbjct: 239 PAPGSGDPGRPRSQWESLRWLAAAGFRVNPNAALCPDLAAVEAFFAAWEHKRRDLPYATD 298 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V K+D+ LQ G ++PRW I+ K+A ++A +RLL + Q+GRTG++TPVA EP Sbjct: 299 GVVVKLDDLRLQADAGFTQKAPRWAIALKYAAEEAPSRLLRLVAQVGRTGVVTPVAEFEP 358 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V + G ++ ATLHN D + L D+ GD ++V++AGE+IP+VV ++ Sbjct: 359 VPLAGTSVSRATLHNADRLAEL-----------DLHAGDTIVVRKAGEIIPEVVRVLAEL 407 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R P A P PS CP C S +VR+ AA RC +C A L+H+VS+ A Sbjct: 408 RPPGAAPLQLPSSCPECGSALVREEGE------AATRCVNS-SCPAILRGALRHWVSKGA 460 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +++GLG + ++ +R AD++ L S + G+ S NL + Sbjct: 461 MDVDGLGAKLVEQLVDR----GLVRSIADLYRLDAALLAS------LERMGETSAANLVE 510 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 ++ + R ++ LGI HVGA A++LA+ + S + + + Sbjct: 511 ALEASKQQPWHRQLYGLGIHHVGAVNAKALARAFPSAETLGMA-------AAEQPEVITA 563 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----------IENK 650 V +G IA+++ +++ N + L P + + + Sbjct: 564 VFGIGGEIAESLRQWFATAANGALLAELQALGIPLAAAEREQGVEGEGGGPGGAGHLSGQ 623 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 V TGTL + R +AQ + G VS +S+KT ++ G GSKL KA+ LGV +++ Sbjct: 624 TFVLTGTLPSLSRSQAQALIEAAGGKVSGSVSKKTSYVVAGAEAGSKLTKAEALGVAVLD 683 Query: 711 EEQFLFLLQQYNTT 724 EE LL++ T Sbjct: 684 EEGLRALLEELEGT 697 >gi|227512904|ref|ZP_03942953.1| NAD-dependent DNA ligase [Lactobacillus buchneri ATCC 11577] gi|227083904|gb|EEI19216.1| NAD-dependent DNA ligase [Lactobacillus buchneri ATCC 11577] Length = 675 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 238/719 (33%), Positives = 371/719 (51%), Gaps = 53/719 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E ++ +QA L ++++ D YY Y P + DS YD ++ + FP + Sbjct: 4 EDMTEQQAESAARELREKLNKWADEYYTYDSPSVEDSVYDQTYQQLVDLETTFPQIV--- 60 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P K+G KV H IP LSL +++IE+L+ F R + + Sbjct: 61 TPDSPTQKVGDHTLPGFTKVPHEIPMLSLGDVFSIEELKAFADR----LSDSESVPFEYN 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG I++RYE G V A RG+G GED++ ++ I +IP L+ P IEVRG Sbjct: 117 CELKIDGLAISLRYEDGILVQGATRGNGQIGEDITRNLKTIKSIP--QRLSRPINIEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 E Y+ K F+ LN + G P+ANPRNAA+G LR+L+ R L+ F++ + + Sbjct: 175 ECYMPKESFVELNQQRQVEGVAPFANPRNAAAGSLRQLDSRVTAHRKLSTFMYNVANYDD 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + Q ML++++ LGF +N+ + A+ I Y R TL Y IDG+V KV+ Sbjct: 235 LESDTQSGMLEELKKLGFTINSDYQVAHNMDDIDQYVERYTKQRDTLAYGIDGIVIKVNS 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 LQ+ LG + PRW I++KF ++A T + DI+ +GRTG++TP A ++ V + G + Sbjct: 295 LPLQRSLGATVKVPRWAIAYKFPPEEAETTVRDIEWTVGRTGVVTPTAVMDEVTLAGTTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN DY++ +DIR+GD V + +AG++IP++ + ++R D+QP+ Sbjct: 355 SRASLHNPDYLQ-----------EKDIRIGDTVRLHKAGDIIPEISTYVKDKRQVDSQPY 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C S +V A RC C AQ E L HF SRDA NI+GLG Sbjct: 404 EIPTECPSCGSELVHLDEE------VALRCINPQ-CPAQLKEGLTHFASRDAMNIDGLGP 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + FK + A ++ L Q + + FG+ S NL +I+ RN Sbjct: 457 KIIGQLFKK----HMLTDVAGLYGLTFDQLMT------LDKFGEKSAGNLLTAIDNSRNN 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S ER +F LGIRHVGA+ AR +A+ + + + + +G II Sbjct: 507 SCERLLFGLGIRHVGAKAARLIAQRFKNIDKVMDAT----------AQEIAEIDTMGMII 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI-----GRHEKNVSSEIENKKLVFTGTLQKIQR 663 A ++V ++ P++ + L + K S K+LV TG LQ I R Sbjct: 557 ADSVVTYFSMPQSKELISQLKQVGVNMDYLGATDEALKESDSVFNGKRLVLTGKLQHITR 616 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 +A ++ GA VS +S+KTDI++VG++PGSK +KA+ LG+ + +E +F + Sbjct: 617 PEATRWLENHGAKVSGSVSKKTDIVVVGEDPGSKYDKARNLGIDVWDENRFAEAMADEK 675 >gi|116513594|ref|YP_812500.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275636|sp|Q04BW0|DNLJ_LACDB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116092909|gb|ABJ58062.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 671 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 207/714 (28%), Positives = 358/714 (50%), Gaps = 49/714 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S+E+A++E+ L ++ YY+ P++ D YD R + A+ +L + Sbjct: 4 SLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYSELK---SAD 60 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 ++GGE+N L KV H +P LS+ +++ E+L +F R+ + + + + +E Sbjct: 61 SITQRVGGEVNSDLPKVEHPVPMLSMGDVFSKEELAEFDQRVQKAIG----HPVAYNVEL 116 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG +++ YE+G+ A+ RG+G GEDV+ ++ I +P+ L I EVRGE Y Sbjct: 117 KIDGLSLSLEYEEGRLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGECY 174 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 +SK F LN E G +ANPRNAA+G LR+L+P + Sbjct: 175 MSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPPAGID 234 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q++ + +M LGF N R+ + Y +E R +LPY IDG+V KVD+ +LQ Sbjct: 235 SQHQAICEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDDLALQ 294 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 LG + PRW I++KF ++ T + +I+ +GRTG++TP A ++PV + G+ + A+ Sbjct: 295 ADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVRLAGSTVARAS 354 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D + L D+R+GD V + +AG++IP++ ++++++R D+ P+ P+ Sbjct: 355 LHNPDLLAKL-----------DVRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPYEVPT 403 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +V A RC +C AQ E + HF SR A NI GLG + + Sbjct: 404 KCPSCGEDLVHLDEE------VALRCINP-SCPAQVEEGITHFASRQAMNIAGLGPKIVK 456 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + + AD++ L + + F + S+ NL +I++ R S+E Sbjct: 457 QLIAKD----LVHNVADLYYLTADDLS------QLDHFKEKSINNLLVAIDQSRKNSVEL 506 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGI +VG + A+ +A+ + + A L + +G IA+++ Sbjct: 507 VLFGLGIDNVGGKAAQLIARKFKNMSKIASA----------SVQELTAIDTIGMTIAESL 556 Query: 613 VEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++Q + L + G + + + K +V TG L R + + + Sbjct: 557 TTYFQQEEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAEFTKKL 616 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 LGA V+ +S+KTD ++ G++ GSKL KA+ L + + E + + +++ +T Sbjct: 617 QALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDTE 670 >gi|1352293|sp|P49422|DNLJ_THESC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|609276|emb|CAA82645.1| DNA ligase [Thermus scotoductus] gi|1093606|prf||2104272A DNA ligase Length = 674 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 240/712 (33%), Positives = 382/712 (53%), Gaps = 52/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++E+ARK ++ L I YH+ YY + P I D+EYD L R + FP+L P Sbjct: 1 MTLEEARKRVNELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPELK---SP 57 Query: 72 NGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G + + + H SL+ +N ++L+ F RI R ++ +T+ Sbjct: 58 DSPTEQVGAKPLEATFRPIRHPTRMYSLDNAFNFDELKAFEERIGRALGRE--GPFAYTV 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K+DG + + YE G V+ A RGDG GE+V+ + IPTIPR + PE +EVRGE Sbjct: 116 EHKVDGLSVNLYYEDGVLVWGATRGDGEVGEEVTQNLLTIPTIPRRVKGV-PERLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VY+ FL LN+E+ G K + NPRNAA+G LR+ +P R L + LG E Sbjct: 175 VYMPIEAFLRLNEELEEKGEKIFKNPRNAAAGSLRQKDPRITARRGLRATFYALGLGLEE 234 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K Q ++L +R GFPV +G +A G+ Y R +LP++ DG+V K+DE Sbjct: 235 SGLKTQLDLLHWLREKGFPVEHGFARAEGAEGVERIYQGWLKERRSLPFEADGVVVKLDE 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 SL ++LG AR+PR+ I++KF ++ TRLL + Q+GRTG +TPV LEPV I G+++ Sbjct: 295 LSLWRELGYTARAPRFAIAYKFPAEEKETRLLQVVFQVGRTGRVTPVGILEPVFIEGSVV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + TLHNE YI+ L D+R+GD VLV +AG VIP+V+ ++ +R + +P Sbjct: 355 SRVTLHNESYIEEL-----------DVRIGDWVLVHKAGGVIPEVLRVLKEKRTGEERPI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 +P CP C R+V++ HRC L C A++ E ++H+ SR A +I GLG+ Sbjct: 404 RWPETCPECGHRLVKE--------GKVHRCPNPL-CPAKRFEAIRHYASRKAMDIGGLGE 454 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + ++ AD++ L++ + G+ S NL I + + Sbjct: 455 KLIEKLLEK----GLVKDVADLYRLKKEDLLG------LERMGEKSAQNLLRQIEESKGR 504 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 LER +++LG+ VG +AR+LA ++ + + + +V VG++ Sbjct: 505 GLERLLYALGLPGVGEVLARNLAAHFGTMDRLLEASLEELL----------QVEEVGELT 554 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A+ I E Q+P V L + + + ++ V TG L + R + + Sbjct: 555 ARGIYETLQDPAFRDLVRRLKEAGVVMEAK--ERGEEALKGLTFVITGELSR-PREEVKA 611 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + +LGA V+ +SRKT ++VG+NPGSKLEKA+ LGV + EE+ L+++ Sbjct: 612 LLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLIEE 663 >gi|210630510|ref|ZP_03296493.1| hypothetical protein COLSTE_00378 [Collinsella stercoris DSM 13279] gi|210160444|gb|EEA91415.1| hypothetical protein COLSTE_00378 [Collinsella stercoris DSM 13279] Length = 756 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 229/735 (31%), Positives = 346/735 (47%), Gaps = 76/735 (10%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 L + YH YY P I D+ +D L I A P+L P+ ++GG + Sbjct: 53 ELRHLLDYHAYRYYALDAPEISDAAFDKLLIELQQIEAAHPELV---TPDSYTQRVGGYV 109 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 + VTH S++ N+E+L +++ R + +T E KIDG + I Sbjct: 110 SEQFTPVTHMARMYSMDDAMNLEELDEWLARTEDALGA---GRVAYTCELKIDGLGVAIT 166 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII--------EVRGEVYIS 194 Y+ G FV AA RGDG +GEDVS +R I +P LS + EVRGEVY+ Sbjct: 167 YQNGAFVRAATRGDGTTGEDVSLNVRTIKDVPMHLSEAALAHMGADRSAPIEVRGEVYMP 226 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 K F LN E A GR+P+ANPRNAA+G LR+ +P +R+L F++ + T+ + Sbjct: 227 KGSFARLNAEADAEGREPFANPRNAAAGSLRQKDPKVTASRHLATFIYAIADTAPLHVDS 286 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q+ L +R GF VN V + + + ++ + + R L YDIDG+V KVD F Q Sbjct: 287 QHAFLDWLRRAGFSVNGSVARCTSPAEVHAFCADALAHRGDLDYDIDGVVVKVDSFDQQG 346 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG AR+PRW I+ KF ++ +T L DI IQ+GRTG+LTPVA +PV + G+ I ATL Sbjct: 347 DLGFTARAPRWAIAFKFPPEEKTTVLRDIRIQVGRTGVLTPVAEFDPVTVAGSTIARATL 406 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ +D+R GD ++V +AG+VIP+VV ++++R + P+ Sbjct: 407 HNLDEIRR-----------KDVRPGDTIIVHKAGDVIPEVVGPVLDKRPEGTAEWDMPAT 455 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S VV + + L C AQ ERL H+VSR +++G+G D Sbjct: 456 CPACGSPVVHEDGEVAYR-------CVSLDCPAQLKERLLHWVSRGCMDVDGVG----DE 504 Query: 494 FFKSEDPAFSIRIPADIFTLQ--------------RRQQTSTTKIENILGFGDVSVTNLY 539 A + AD + L + + + + G + Sbjct: 505 LIDKMIEAGLLHDVADFYHLTVDAVAALDTGRTYLKDDKKKGVSAGDSIKVGATIAQKVV 564 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 D + + R L R +F+LGIRHVG +A +A+ +L+ A + Sbjct: 565 DELTRSREQPLSRVLFALGIRHVGKSVAEVIAQRFLTVDALAAASE----------EDIA 614 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---------------RHEKNVS 644 +G IA ++ +F P N+ ++ L + + + Sbjct: 615 GCEGIGPKIAASVRQFLAVPENLEVLQRLREAGLSLEEDLGAAHAQAAQETGVAADLAEA 674 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 + V TGTL R +A + LGA VS +S+KT ++ G GSKL KA+ L Sbjct: 675 QPLAGLTFVLTGTLVNRTRDEAGAALKLLGAKVSGSVSKKTSYLVAGPKAGSKLTKAESL 734 Query: 705 GVKIMNEEQFLFLLQ 719 GV +++E +L Sbjct: 735 GVPVLDEAALEQILA 749 >gi|302522063|ref|ZP_07274405.1| DNA ligase, NAD-dependent [Streptomyces sp. SPB78] gi|302430958|gb|EFL02774.1| DNA ligase, NAD-dependent [Streptomyces sp. SPB78] Length = 783 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 211/738 (28%), Positives = 349/738 (47%), Gaps = 63/738 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 R+E + +E+ H YY +P++ D+++D L RR A+ P L P+ Sbjct: 33 PADVREEHDGIAREVDEHRYRYYVNDQPVVSDAQFDELLRRLTALEEEHPQL---RTPDS 89 Query: 74 PLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P K+ G+ V H LSL+ +++ E L + R+ + + + E Sbjct: 90 PTQKVAGDYQQFTPFASVEHRERMLSLDNVFDDEGLAAWAERLAKEIGAPGYH---YLCE 146 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190 K+DG + + YE G+ AA RGDG GED++ +R I IP L+ + PE++EVRGE Sbjct: 147 LKVDGLAVNLTYENGRLTRAATRGDGRVGEDITPNVRTISDIPEQLAGDRVPELVEVRGE 206 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VY DF ALN ++ G KP+ANPRNAA+G LR+ +P TR L+ VHG+G Sbjct: 207 VYFPMEDFEALNARLVDAGEKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAREGF 266 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + + G P + ++ G+ S+ R ++ ++IDG+V K+DE Sbjct: 267 TIDRLSHAYELLHEWGLPTARHNKVVDSLDGVRSFIRYYGEHRHSVEHEIDGVVVKLDEI 326 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ +LG +R+PRW + KF ++ +T+L+DI + +GRTG +TP A +EP+ + G+ + Sbjct: 327 PLQGRLGSTSRAPRWATAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPIVVAGSEVE 386 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN+D +K + + +GD V++++AG+VIP+++ +V+ R F Sbjct: 387 FATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEHAFV 435 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + + + RC +C AQ ER+ + R + +IE LG Sbjct: 436 MPAECPECGTPLRAM-----KEGDIDLRCPNARSCPAQLRERIFYLAGRKSLDIEHLGYV 490 Query: 490 QLDFFFKSEDPA-FSIRIPADIFTLQRRQQTSTTKI------------------------ 524 + +P+ +R D+F L + Sbjct: 491 AATALTQPIEPSDPPVRDEGDLFDLTAEELLPIRSYVLDQDSGLPKRDPASGEEKIVTFF 550 Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 N G + ++ ++I + L + + L IRHVG A +LA+ + S Sbjct: 551 ANKEGVAKKNTLSMLENIEAAKQRPLAQILTGLSIRHVGPVAAAALAREFRSIDRIFAAE 610 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 + L VG IA ++ ++Y+ + + + S Sbjct: 611 ES----------ELAETEGVGPTIAASLKQWYEEDWHREILRRWKAAGVRMEAAESETDS 660 Query: 645 SE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702 +E +V TGTL++ R A+E + GA V+ +S+KT ++VGDNPGSK +KA Sbjct: 661 GPRPLEGLTVVVTGTLERWTRDAAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAL 720 Query: 703 QLGVKIMNEEQFLFLLQQ 720 L V ++ E+ F LLQ+ Sbjct: 721 SLKVPVLEEDGFAILLQE 738 >gi|139438245|ref|ZP_01771798.1| Hypothetical protein COLAER_00787 [Collinsella aerofaciens ATCC 25986] gi|133776442|gb|EBA40262.1| Hypothetical protein COLAER_00787 [Collinsella aerofaciens ATCC 25986] Length = 742 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 234/735 (31%), Positives = 351/735 (47%), Gaps = 76/735 (10%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 L E+ YH YY P I D+ +D + I A+PDL P+ ++GG + Sbjct: 39 ELRHELDYHAYRYYMLDAPEITDAAFDKMLVELQEIEAAYPDLV---TPDSYTQRVGGYV 95 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 + VTH S++ ++++L ++ R ++ +T E KIDG + + Sbjct: 96 SEQFTPVTHMARMYSMDDAMDLDELDAWLQRTEDALGA---GNVTYTCELKIDGLGVALT 152 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN--------IPEIIEVRGEVYIS 194 Y+ G FV AA RGDG +GEDVS +R I +P LS IEVRGEVY+ Sbjct: 153 YQNGTFVRAATRGDGTTGEDVSLNVRTIKDVPMHLSEPALTHMGADRERTIEVRGEVYMP 212 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 K F+ LN+E A GR P+ANPRNAA+G LR+ +P R L F++ + T + Sbjct: 213 KGSFVRLNEEADAEGRDPFANPRNAAAGSLRQKDPKVTARRDLATFIYAIADTDPLHVHS 272 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q E L +R GF VN V + T + + + R L YDIDG+V KVD F Q Sbjct: 273 QREFLDWLRSAGFSVNPNVARCATPAEVHEFCAQALEHRGDLDYDIDGVVVKVDSFQQQL 332 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG AR+PRW I+ KF ++ T L +I IQ+GRTG+LTPVA +PV + G+ I ATL Sbjct: 333 DLGFTARAPRWAIAFKFPPEEKQTVLREIRIQVGRTGVLTPVAEFDPVTVAGSTIARATL 392 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ +++R GD ++V +AG+VIP+VV ++++R D+ + P Sbjct: 393 HNIDEIRR-----------KNVREGDTIIVHKAGDVIPEVVGPVLDKRPADSVDWQMPEV 441 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S VV + + + C AQ ERL H+VSR +++GLG + +D Sbjct: 442 CPVCGSPVVHEDGEVAYR-------CVSIDCPAQLKERLLHWVSRGCMDVDGLGDEIVDK 494 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQ----------TSTTKIENILGFGD----VSVTNLY 539 A I AD + L +S +K G + + Sbjct: 495 MI----AAGLIHDVADFYQLTVDDIAGLDTGRTYASSNSKKGVKKGDPIPVGLKTAEKII 550 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +NK ++ L R +F+LGIRHVG + +A+ +LS + Sbjct: 551 VELNKSKSQPLGRVLFALGIRHVGKSVGEVIAERFLSIDKLILASE----------EDIA 600 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---------------SPSIGRHEKNVS 644 +G IA ++ +F P N+ +E L + + + E + Sbjct: 601 ECEGIGPKIAASVKQFLAVPENLAVLERLRQAGLSLEVDLGAAHAQAAADAGVAGELADA 660 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 + V TGTL R +A + LGA VS +S+KT ++ G GSKL KA+QL Sbjct: 661 QPLAGLTFVLTGTLVNRTRDEAGAALKVLGAKVSGSVSKKTSYLVAGPKAGSKLTKAEQL 720 Query: 705 GVKIMNEEQFLFLLQ 719 GV +++E+ +L Sbjct: 721 GVPVLDEDALEQILA 735 >gi|56696562|ref|YP_166919.1| DNA ligase, NAD-dependent [Ruegeria pomeroyi DSS-3] gi|81349987|sp|Q5LST6|DNLJ_SILPO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56678299|gb|AAV94965.1| DNA ligase, NAD-dependent [Ruegeria pomeroyi DSS-3] Length = 739 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 287/752 (38%), Positives = 429/752 (57%), Gaps = 59/752 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ +A +EL+ L ++ + Y+ P I D++YDALK+R I FP L R P Sbjct: 1 MTEAEAAQELARLAGLLAQANLAYHTLDAPEISDADYDALKQRNAEIEARFPHLKR---P 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G KV+H++ +SL ++ D+ F I ++ + ++ +T E Sbjct: 58 DSPSEQVGARPGEGFSKVSHAVRMMSLGNAFDDADVADFDRSIRKYLGLDVETALAYTAE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG +++RYE+G V AA RGDG GE+V+A R I IP + PE++EVRGEV Sbjct: 118 PKIDGLSLSLRYEQGVLVQAATRGDGEVGENVTANARTIADIPARIEGA-PEVLEVRGEV 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+S DF ALN A G K +ANPRNAA+G LR+L+ R L FF + G+ SE Sbjct: 177 YMSHADFAALNTRQEAEGGKLFANPRNAAAGSLRQLDAAITRARPLRFFAYSWGELSEPL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A+ Q + ++++ LGF N R+ ++++Y ++++ R+TL YDIDG+VYK+D+ Sbjct: 237 AETQMQAIERLAGLGFQTNPLTRRCADLDAMIAHYRDIEAQRATLGYDIDGVVYKLDDLG 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV +GG +++N Sbjct: 297 LQARLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGGVVVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNEDYI G D+ G+ +R G+DIRVGD V V RAG+VIPK+ D+ +N+R A PF F Sbjct: 357 ATLHNEDYIAGRDSRGQEIRDGKDIRVGDWVQVYRAGDVIPKIADVDLNKRPEGANPFEF 416 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C S +R+ A RCTGG+ C AQ +E+LKHFVSR AF+IEGLG +Q Sbjct: 417 PEQCPECGSPAIREEG------DAVRRCTGGVICPAQAVEKLKHFVSRAAFDIEGLGAKQ 470 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F IR PADIF L+ R +++N G+G+ S TNL+ +I+ +R I L Sbjct: 471 VEQFHAD----GWIREPADIFELRSRYGEGLQQLKNREGWGEKSATNLFQAIDDKRRIPL 526 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN------------------------- 585 R IF+LGIRHVG A+ L+ +Y + A ++ Sbjct: 527 ARLIFALGIRHVGEVGAKDLSLHYRDWDAMAAALDTARLAALAHRAADTAEEQERQQAQA 586 Query: 586 ------------------NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 + W LI V +G + ++ + + N A + Sbjct: 587 EGRRARISDTRAAVIAAQEVPPEAAAAWADLIGVDGIGATLGLSLSDAFANGDERAAFDR 646 Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 L ++ I S + K +VFTG+L+K+ R +A+ LGA V+ +S+KTD+ Sbjct: 647 LSAHLTV-IPPDAPARDSPVAGKTVVFTGSLEKMTRAEAKARAEALGAKVAGSVSKKTDL 705 Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ G GSKL+ A+ LG++ ++E+ +L L++ Sbjct: 706 LVAGPGAGSKLKTAESLGIETLDEDGWLKLIE 737 >gi|260887264|ref|ZP_05898527.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185] gi|330838979|ref|YP_004413559.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185] gi|260863326|gb|EEX77826.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185] gi|329746743|gb|AEC00100.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185] Length = 669 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 212/713 (29%), Positives = 358/713 (50%), Gaps = 47/713 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + I++ +KEL+ L + I +H+ YY P I D EYD L + A+ +P+L Sbjct: 1 MDIQEVKKELAQLRRTIRHHNVRYYNDDNPEISDYEYDQLMLQLKALEREYPELI---TE 57 Query: 72 NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 N P K+GG + V H +P LSL+ +++ E++ F+ I + F + Sbjct: 58 NSPTQKVGGTAKRTAGTLVRHDVPMLSLQDVFSREEIEAFVRDIEARM-----ENPVFVV 112 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHS-GEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG + +RYE G A RGDG GEDV+ + I + + L +P EVRG Sbjct: 113 EEKIDGLSLALRYENGTLSRAITRGDGIVQGEDVTENAKVIKDVVQKLKEPLPY-FEVRG 171 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE 248 EVY++K F A+N+ +G K +ANPRN A+G LR+L+ R L+ FV L Sbjct: 172 EVYMTKAAFEAVNERRQLIGLKLFANPRNCAAGTLRQLDSRITKERGLSLFVFNLQAVRG 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E M G V + T + ++ + R LPYDIDG V K+++ Sbjct: 232 KDFQTHVEAYDFMNRQGIKVIHAFHVCRTAEEVWDAIEQIGASRGDLPYDIDGAVVKLND 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 FS ++ LG +++PRW I++K+ ++ + + I + +GRTG +TP A +P+ + G + Sbjct: 292 FSQRESLGATSKAPRWAIAYKYPPEEKESVVRSITLSVGRTGRITPTATFDPIRLCGTTV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATLHN+D+I L D+RVGD V+V ++GE+IPK+ ++ +R +PF Sbjct: 352 ERATLHNQDFIDDL-----------DVRVGDTVVVYKSGEIIPKIKAVVKEKRPEGTEPF 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 CP+C ++ R+ + K AC AQ + +FVSRDA +I+GLG+ Sbjct: 401 KIGDRCPVCGAKAEREADSADVK-------CINQACPAQVESHILNFVSRDAMDIKGLGE 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + + DIF L+ ++ ++ + + + L +I + + Sbjct: 454 KNIAALIEK----GFLHTIVDIFRLKEHREELISQG---VVGKEKNTDKLLAAIEEAKKN 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +R + LGI +G A +L +++ + + + +++ V +G+ Sbjct: 507 EPQRLLTGLGIPGIGKAAAAALMQHFKTLEALENASD----------EAILAVRDMGETS 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 AI ++QN N L + + + E+ + V TGTL+ R + E Sbjct: 557 VAAIRSYFQNEGNAKICRELQQLGVATAVQERAAQGDELADMSFVVTGTLRHFGRREITE 616 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 + Q G V++ +S+KTD ++ G+N GSKL+KA+QLG++I+ EE+FL L+ + Sbjct: 617 LIEQHGGRVTSSVSKKTDCLVAGENAGSKLQKAEQLGIRILTEEEFLQLIGRK 669 >gi|317507336|ref|ZP_07965075.1| DNA ligase [Segniliparus rugosus ATCC BAA-974] gi|316254381|gb|EFV13712.1| DNA ligase [Segniliparus rugosus ATCC BAA-974] Length = 712 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 228/723 (31%), Positives = 348/723 (48%), Gaps = 53/723 (7%) Query: 12 LSIEQA-----RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 +S +A ++ L ++ H YY P + D+E+DAL R A+ P+LA Sbjct: 1 MSEGKAAGTTPQERWLRLADQVKEHQFRYYVLDSPTVTDAEFDALLRELQALEDEHPELA 60 Query: 67 RSEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 + P +GG +V H P LSL+ ++N ED + R+ + + Sbjct: 61 ---SASSPTKLVGGAGFTTDFAEVGHVEPMLSLDNVFNEEDFLAWAERV----AQGAEQP 113 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNI 181 I F E KIDG I++ YE+G+ AA RGDG +GEDV+ +R I +P LS Sbjct: 114 INFDCELKIDGLGISLVYERGRLARAATRGDGRTGEDVTLNVRTIADVPHELSLAAGEEP 173 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240 PE++EVRGEV+ DF ALN ++A G+ P+ANPRN+A+G LR+ NP R L Sbjct: 174 PELLEVRGEVFFKLKDFEALNASLVAEGKAPFANPRNSAAGSLRQKNPAITAKRKLAMLC 233 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 HGLG T + E QK++ G PV+ + ++ + R + YDID Sbjct: 234 HGLGATGGWSPATRSEAYQKLKDWGLPVSPYNTTLASPEAVLGHIRHWGERRHEVEYDID 293 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 GLV KV+E SL +LG +R+PRW I++K+ ++ T+LLDI + +GRTG +TP A +EP Sbjct: 294 GLVVKVEEMSLYARLGNTSRAPRWAIAYKYPPQEVQTKLLDIRVNVGRTGRVTPFAFMEP 353 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V + G+ + ATLHN + + + +GD V++++AG+VIP+V+ +V Sbjct: 354 VLVAGSTVGLATLHNASEVAR-----------KGVLIGDTVVLRKAGDVIPEVLGPVVAL 402 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R + F P+ CP C + + + RC C AQ ER+ H R A Sbjct: 403 RDGSEREFVMPAQCPECGAELA-----PAKEADVDIRCPNARTCPAQLRERVFHVAGRGA 457 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST----TKIENILGFGDVSVT 536 F+IE LG + K I D+F L + T G + Sbjct: 458 FDIEALGYEAAVDLLKHNA----IEDEGDLFDLDEERLLKTELFVNTSGKNAGQLSANGR 513 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 L ++ + ++ L R + +L IRHVG AR+LA + S D Sbjct: 514 KLLQNLEQAKSRDLWRVLVALSIRHVGPTAARALATRFGSVDAVFGA----------DQE 563 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 +L V VG IA ++ E+++ + VE E++ + +V TG Sbjct: 564 ALAEVDGVGPTIAASVREWFEVDWHRSIVERWRAAGVTMAEDREQS-PQTLAGLTIVVTG 622 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L R QE + G S +S+KT ++ G+ GSK +KA+QLGV I++E F+ Sbjct: 623 SLDGFTRESVQEAIIAHGGKASGSVSKKTSYVVAGEGGGSKRDKAEQLGVPIIDEAAFVQ 682 Query: 717 LLQ 719 LL Sbjct: 683 LLA 685 >gi|313836700|gb|EFS74414.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA2] gi|314929893|gb|EFS93724.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL044PA1] gi|314972321|gb|EFT16418.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA3] gi|328907750|gb|EGG27514.1| NAD-dependent DNA ligase LigA [Propionibacterium sp. P08] Length = 740 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 204/746 (27%), Positives = 329/746 (44%), Gaps = 74/746 (9%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +AR + L Q I D YY P + D+ YD L + P+L P+ P Sbjct: 18 AEARHRWTELAQRILDAQDAYYANDAPTMSDAAYDQLMVELKKVEDDHPEL---RSPDSP 74 Query: 75 LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G V H LSL+ I+ ++L ++++R+ K F E K Sbjct: 75 TQRVGAPQRVTDFAPVEHLERLLSLDNIFTRDELSEWMSRVVAAVGKIPG----FLCELK 130 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192 IDG + + Y G+ + A RGDG GEDV+A +R I IP+ L+ + +EVRGEV+ Sbjct: 131 IDGLAVDLVYRDGQLISGATRGDGRIGEDVTANVRTIAAIPQKLTGDDVPRLLEVRGEVF 190 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFA 251 DF LN +I G+ P+ANPRNAA+G LR+ + + VHG+G Sbjct: 191 FPVADFADLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTESRPLSMIVHGIGAVEGHDF 250 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q K+ G PV+ + + + R + IDG+V KVD+ L Sbjct: 251 PSQGHAYDKLAQWGLPVSPYFKIVENADEVHDFVTHWGESRDEASHQIDGVVIKVDDVCL 310 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + A Sbjct: 311 QRKLGVTSRAPRWAIAYKYPPEEVNTELLDIRVSVGRTGRVTPYGVMRPVTVAGSTVEMA 370 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN +K + + +GD V++++AG+VIP+++ +V R + FS P Sbjct: 371 TLHNAFEVKR-----------KGVLLGDTVVLRKAGDVIPEILGPVVELRDGSEREFSMP 419 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + + + RC C +Q ER+ SR A +IE LG + Sbjct: 420 DRCPSCGTELAYE-----KDGDKDLRCPNAKGCPSQLRERVFGLASRGALDIEALGWEAA 474 Query: 492 DFFFKSED----------------------PAFSIRIPADIFTLQR-------------- 515 E+ A + D + Sbjct: 475 IALTDPENQRPQDEEAAEGLPERQTAVLSSEAGLFDLQPDDLAGVKVWRRRKVSGKLSPW 534 Query: 516 --RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 T + ++D + K ++ L R + +L IRHVG AR+LA + Sbjct: 535 QLEPYFFTKATAKKPSVPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + S + + L V VG+IIA+++ ++ + V Sbjct: 595 FGSVEAIREA----------SVEELAGVDGVGEIIAESVKRWFDVEWHQEIVSRWAAAGV 644 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 ++ ++ +V TG+L+ R +A+E + G + +SRKTD ++VG+N Sbjct: 645 RMADDRDEAPEQTLKGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GSK KA+ LG I++E F +LL Sbjct: 705 AGSKETKARDLGRPILDEAGFRYLLD 730 >gi|322389291|ref|ZP_08062851.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC 903] gi|321144035|gb|EFX39453.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC 903] Length = 652 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 216/701 (30%), Positives = 353/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L + ++ + YY P + DSEYD L R + A PD P P ++ Sbjct: 2 KTRMKELVELLNRYAYEYYTKDAPSVSDSEYDQLYRELVELETAHPDEIL---PESPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + SI + E KIDG Sbjct: 59 VGGVVLKGFTKYQHQYPLYSLQDAFSREELEAFDQRVRK-----EFPSISYVCELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G V A RGDG GED++ ++ + IP VL + I VRGE Y+ + Sbjct: 114 SISLTYENGVLVTGATRGDGSVGEDITENLKRVKDIPLVLPEPVN--ITVRGECYMPRAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N G +ANPRNAA+G LR+L+ T I N + S Q + Sbjct: 172 FDRVNQIRQENGEPEFANPRNAAAGTLRQLD-TTIVAKRNLATFLYQEVSPTDQSSQEGV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+K+ CLGF VN A I + ++ +R LPYDIDG+V KV++ ++Q++LG Sbjct: 231 LEKLACLGFVVNQERVLAEDMEQIWDFIQKVAQLREDLPYDIDGIVIKVNDLAVQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++P+W +++KF ++ ++L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPKWAVAYKFPAEEKEAKILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DI D V+V +AG++IP V+ ++ ++R D + P+ CP C Sbjct: 351 YI-----------AEKDIHQDDTVIVYKAGDIIPAVLRVVKDKRVSDQAL-AIPTQCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 QS ++ + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 399 QSELLHFEDE------VALRCINPL-CPAQIKEGLNHFASRDAMNITGLGPAVVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + A I+ L + + GF + S LY++I + S E+ +F L Sbjct: 450 --AAQLVEDVAGIYRLTVEDLLT------LEGFKEKSAEKLYEAIQASKENSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG+++++ L + + A D + + +G ++A+++ ++ Sbjct: 502 GIRHVGSKVSQILLQEFHDLDQLATA----------DPERIASIDSLGMVVAESLKRYFA 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + ++ L + + + + +V TG L+++ R +A+ + LGA Sbjct: 552 QEGSKRLLQELKEAGVNMAYLGEKVAADAALSGMTVVLTGKLERLTRSEAKAKLESLGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTD+++ G + GSKL KAQ+LG+++ +E L Sbjct: 612 VTGSVSKKTDLVVAGSDAGSKLTKAQELGIQVEDEAWLESL 652 >gi|257125939|ref|YP_003164053.1| DNA ligase, NAD-dependent [Leptotrichia buccalis C-1013-b] gi|257049878|gb|ACV39062.1| DNA ligase, NAD-dependent [Leptotrichia buccalis C-1013-b] Length = 706 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 234/735 (31%), Positives = 383/735 (52%), Gaps = 50/735 (6%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 KK+ + + ++ + +++ L EI YH++ YY PII D EYDAL R + Sbjct: 11 KKQNINNEKNINFSKIQEKYKKLRNEIEYHNNLYYNEDNPIISDMEYDALMRELKQLEQE 70 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW--- 118 +P+L N P KIGG + KV H P LSL +NI ++ F R+ + Sbjct: 71 YPELL-ENSENSPTKKIGGTASEKFSKVRHRTPMLSLSNTYNISEIEDFDKRVKKIILSQ 129 Query: 119 ---QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR 175 K +D ++ + LE K+DG I++ YE G+ V A RGDG GEDV+ IR I +IP+ Sbjct: 130 IDENKNNDENLEYILELKLDGLSISLIYENGELVQAVTRGDGQIGEDVTENIREISSIPK 189 Query: 176 VLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITR 234 L + +EVRGE+ + ++F +N E G +ANPRNAASG +R+L+ T R Sbjct: 190 KLKDPVS--LEVRGEIILPISNFNRINQEREDDGEDVFANPRNAASGTIRQLDKTIVADR 247 Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 L+ +++ L E ++ ++ LGF + F + ++ R T Sbjct: 248 GLDCYLYYLVNAENYGINTHLESIEYIKNLGFQTTGVFEKYTDFTELEKSIDKWHDKRKT 307 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L Y+ DGLV KV+ F+L + LG +SPRW I++KF +Q T+L D+ Q+GRTG++TP Sbjct: 308 LDYETDGLVIKVNNFALYETLGYTTKSPRWAIAYKFPAEQVKTKLTDVTFQVGRTGVITP 367 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VA LE VN+ G+++ A+LHN D I+ +DI++GD V+V++A E+IP+VV Sbjct: 368 VAELEAVNLSGSVVKRASLHNFDEIRR-----------KDIKIGDNVIVEKAAEIIPQVV 416 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 +++ ++R P+ CP+C S + + + A +C L C + ++ + Sbjct: 417 NVVFDDRTGKEIEIQEPTNCPVCNSELSHEEG------LVALKCHNPL-CPEKVKRQIAY 469 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 FVSRDA NI GLG + ++ F + I+ DI++L++ ++ ++EN+ G S Sbjct: 470 FVSRDAMNISGLGDKIVEKFIE----LGKIKTIVDIYSLEKYRE----ELENLEKMGQKS 521 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 V NL +SI + + +++LGI VG A L K + + +N N Sbjct: 522 VDNLINSIESSKTRDFSKVLYALGIPFVGKFNANLLTKTFKNIENL----------KNQS 571 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH---EKNVSSEIENKK 651 +L+ V +GD +A A+ F + N + L EK + I++K Sbjct: 572 IENLLAVKGIGDKVAVAVNTFLNDENNWKIITDLQNIGLQFAIDETNLEKIADNPIKDKN 631 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 + TG LQK +R+ ++ + G +++S+ D +I G+ GSKLEKA++LG++++ E Sbjct: 632 FLATGKLQKYKRNDIKDIILSKGGNYLSVVSKNLDFLIAGEKAGSKLEKAEKLGIRVLTE 691 Query: 712 EQF-LFLLQQYNTTL 725 E F L+ N + Sbjct: 692 EDFEKEFLENINENI 706 >gi|290957204|ref|YP_003488386.1| DNA ligase [Streptomyces scabiei 87.22] gi|260646730|emb|CBG69827.1| putative DNA ligase [Streptomyces scabiei 87.22] Length = 739 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 220/735 (29%), Positives = 356/735 (48%), Gaps = 64/735 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R++ + L ++I H YY P++ D+E+D L R +A+ + +L P+ P K Sbjct: 23 REKHARLAEQIEEHRFRYYVKDAPVVSDAEFDELLRTLEALEDEYGEL---RTPDSPTQK 79 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 + E L +V H LSL+ +++ E L + R+ + D + E KIDG Sbjct: 80 VAVEYETDLAEVEHRERMLSLDNVFDDEGLAAWAERVAKDVGTTDYH---LLCELKIDGL 136 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVYISKN 196 + + YE G+ AA RG G +GED++ +R I IP L + +E+RGEVY Sbjct: 137 AVNLTYEDGRLTRAATRGTGRTGEDITPNVRTIAEIPHRLKGDRVPRLVEIRGEVYFPME 196 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG--KTSEIFAKG 253 F LN+ +A G KPYANPRN+ASG LR+ +P T L+ VHG+G + + Sbjct: 197 AFQGLNERRVAAGEKPYANPRNSASGSLRQKDPKVTATLPLHMVVHGIGALEGFDGGFTR 256 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E +R G P R + G+ + R ++ ++IDG V K+DE LQ Sbjct: 257 LSEAYDLLRSWGLPTAEHNRVVDDLDGVREFIAYYGENRHSVAHEIDGAVVKLDEIRLQG 316 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG AR+PRW I++K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ + ATL Sbjct: 317 RLGSTARAPRWAIAYKYAPEEVNTKLIDIKVGVGRTGRVTPYAQVEPVTVAGSEVEFATL 376 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA-QPFSFPS 432 HN++ +K +++ +GD V++++AG+VIP+++ +V+ R + +PF P+ Sbjct: 377 HNQEVVK-----------AKNVLIGDTVVIRKAGDVIPEILGPVVDLRDENETRPFVMPT 425 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK---- 488 CP C + + + RC +C AQ ER+ + R+ +IE G Sbjct: 426 ECPECGTPLRPM-----KEGDIDLRCPNARSCPAQLRERVSYLAGRECLDIEHFGGVAAA 480 Query: 489 --------------QQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTS-----TTKIENI 527 + D F + + I+ L + + T N Sbjct: 481 ALTRPLEPADPPLVDEGDLFDLTVEKLLPIKAYVLDADSGLPKHDPKTGEPKVVTVFANQ 540 Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587 G + L I + ++ L RF+ L IRHVG A++LA+ + S Q Sbjct: 541 KGEPKKNTLALLQKIEEAKSRPLARFLNGLSIRHVGPVAAQALAREFRSIDRIEQATQ-- 598 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG--RHEKNVSS 645 L V VG I+A+A+ E++ + + P E Sbjct: 599 --------EELTAVDGVGAIVAKALEEWFAEEWHREIIRKWKAAGVPLEDRGAGEDEGPR 650 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 +E +V TGTL+ R A+E + GA V+ +S+KT ++VG+NPGSK +KA QL Sbjct: 651 PLEGLTVVVTGTLEHHTRDGAKEALQNRGAKVTGSVSKKTSFVVVGENPGSKHDKAMQLK 710 Query: 706 VKIMNEEQFLFLLQQ 720 V ++NE+ F LL+Q Sbjct: 711 VPVLNEDGFAVLLEQ 725 >gi|239917127|ref|YP_002956685.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665] gi|239838334|gb|ACS30131.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665] Length = 797 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 229/799 (28%), Positives = 357/799 (44%), Gaps = 99/799 (12%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + + R+E L + + YYQ P I D+EYDAL RR + + P+L Sbjct: 11 PDPQDIPAADLREEYEDLVERVRAARTAYYQRDAPEISDAEYDALYRRLEDLEALHPELV 70 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK-KDDNS 125 + P ++GGE++ + V H SLE ++++E+L + R + + + + Sbjct: 71 ---SNDSPTQEVGGEVSEAFAPVRHGARMYSLEDVFSVEELEVWFRRAAQALTQVRPGVA 127 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184 + +E KIDG + +RY G+ V AA RGDG +GEDV+A +R I IP LS P Sbjct: 128 PRWLVEVKIDGLAVALRYRDGRLVQAATRGDGVTGEDVTANVRTIGDIPHELSGEGWPAE 187 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 EVRGEV++S F LN G+ P+ANPRNAA+G LR+ +P R L FVHG+ Sbjct: 188 FEVRGEVFMSSAAFAELNARRAEEGQPPFANPRNAAAGALRQKDPAVTAQRPLAMFVHGI 247 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI-----VSYYNEMKSIRSTLPYD 298 G + Q+E + G PV+ R+ V+ E R L ++ Sbjct: 248 GSVEAFGLESQHEAYDALASWGLPVSPYTRRVEGADEEALAAVVAVIEEYGRRRHELIHE 307 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+V K D F+ Q+ LG +R PRW ++K+ ++ T L DI + +GRTG +TP A L Sbjct: 308 IDGIVLKADAFADQRYLGHTSRVPRWAAAYKYPPEEVHTLLRDIAVSVGRTGRVTPFAVL 367 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV + G+ ++ ATLHN+D +K + + +GD V+V++AG+VIP+VV ++ Sbjct: 368 EPVTVAGSTVSLATLHNQDVVK-----------AKGVLIGDTVVVRKAGDVIPEVVGPVL 416 Query: 419 NERHP------DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472 R + + F P+ CP C + + + RC +C AQ R+ Sbjct: 417 PLREKAIEAGRELREFVMPAHCPSCGTPLA-----PAKEGDVDLRCPNARSCPAQLAGRV 471 Query: 473 KHFVSRDAFNIEGLGKQQLDFFFK-------------SEDPAFSIRIPADIFTLQRRQQT 519 +H SR AF++E LG++ + + + I A IF L Sbjct: 472 EHLASRGAFDVEALGEEAARWLVQGPGEDPAEHEGHVRPEGPGPITAEAQIFDLASGTPE 531 Query: 520 STTKIENILG------------FGDVSVTNLYDSINKRRNISLERFIFSLGI-------- 559 + T G T + + +L+ + F+ G Sbjct: 532 AITGPRGEDGLTDLQRSLGAVRVWREGRTKVDGRMVPSGVFTLKPYFFTAGTAKRPSAPT 591 Query: 560 ---------------------------RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592 RHVG ARSLA + S Sbjct: 592 ANTLRLFDELEKAKSQPLWRTLVALSIRHVGPTAARSLATAFGSMTALRAAAEA------ 645 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652 D L + VG IIA A++E++ + V+ +++ +E + Sbjct: 646 GDRDRLAEIDGVGPIIADALIEWFAEDWHREIVDRWTAAGVAMEDEQDESTPRTLEGLTV 705 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TG+L+ R A+E + G S +S+KTD ++ G+ GSKL+KAQ LGV +++E Sbjct: 706 VVTGSLEGFSRDSAKEAILVRGGKASGSVSKKTDFLVAGEAAGSKLDKAQSLGVPVLDEA 765 Query: 713 QFLFLLQQYNTTLRIHDDD 731 +F LL +R D D Sbjct: 766 EFTALLAGGPDAVRPADTD 784 >gi|307244055|ref|ZP_07526174.1| DNA ligase (NAD+) [Peptostreptococcus stomatis DSM 17678] gi|306492579|gb|EFM64613.1| DNA ligase (NAD+) [Peptostreptococcus stomatis DSM 17678] Length = 702 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 233/710 (32%), Positives = 369/710 (51%), Gaps = 47/710 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S ++A + L + ++YH D YY P I D +YD L + + AFP+ + Sbjct: 22 ISKKEAGLMVGDLIEILNYHSDRYYNSDSPEISDMDYDRLMKSLILLEEAFPEYKKK--- 78 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + H P LSL ++N E++R F R+ + + + + +E Sbjct: 79 DSPTVRVGGRALDKFDQYQHERPMLSLSNVFNNEEIRDFDRRVRGGL-EPANGQVNYVVE 137 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG + + YE G A RGDG+ GE+V+ I+ I +IP + + RGEV Sbjct: 138 TKIDGLSVGLTYEDGYLRVGATRGDGYIGENVTENIKTIASIPIKIDEKRK--LVARGEV 195 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 YISK+DF A+N + YANPRN A+G LR+L+P R L+ F+ L ++ Sbjct: 196 YISKSDFEAVNAYQEDHDLQTYANPRNLAAGSLRQLDPKLAAKRPLDIFIFNLENIDDLG 255 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + M+ LG VN + ++ Y RS+LPY+IDG+V KVD + Sbjct: 256 IEKHSQSFDYMKSLGLKVNEEYKLCKDIEEVIDYIEYWTENRSSLPYEIDGMVIKVDSIA 315 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ LG A+SPRW + KF ++ T+LLDI++++GRTG +TP A LEPV + G +++ Sbjct: 316 QREALGFTAKSPRWATAFKFPAERKKTKLLDIEVEVGRTGTITPTAILEPVRLAGTMVSR 375 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNEDYIK RDIR+GDRVLV++AG++IP+VV++ +++R F Sbjct: 376 ATLHNEDYIK-----------ERDIRIGDRVLVQKAGDIIPQVVEVSLDDRTGQEVMFDM 424 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C VR AA +C ++C AQ + HFVSRDA +IEG+G+ Sbjct: 425 PHECPACGQETVRLDGE------AAVKCIN-ISCPAQIRRGIIHFVSRDAMDIEGMGESI 477 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + I+ AD++ + ++ G SV NL SI K ++ L Sbjct: 478 ITSLLDK----GVIKDIADLY------YMDPDILVSLDRMGQKSVANLMASIEKSKSNDL 527 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R I LGIR VG + A+ LA S LI++ G I++ Sbjct: 528 WRLINGLGIRFVGVKGAKLLADACGSMDKIMAASE----------EDLIQIEEFGQIMSD 577 Query: 611 AIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++V+F+ +N VE L + I + ++ ++ E K+V TGTL ++R+ A+ Sbjct: 578 SVVKFFHEDKNKLTVEKLRQAGLNMEVIEKEDQGIAKVFEGMKIVLTGTLPSMKRNDAKA 637 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + ++ +S+ T ++ G+ GSKL+KA LGVK+++E +F+ L+ Sbjct: 638 LIEERAGKATSSVSKSTSFVLAGEEAGSKLDKALSLGVKVIDEAKFMELV 687 >gi|84498237|ref|ZP_00997034.1| DNA ligase [Janibacter sp. HTCC2649] gi|84381737|gb|EAP97620.1| DNA ligase [Janibacter sp. HTCC2649] Length = 731 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 208/734 (28%), Positives = 346/734 (47%), Gaps = 50/734 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ R E + L ++ + H Y+ P + D EYD L +R + + +P L P Sbjct: 30 PDEIRHEWTDLAEQATTHQFAYHVKDSPTVSDGEYDKLMKRLNMLEDEYPSL---RTPES 86 Query: 74 PLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +GG + + V H LSL+ ++ E++ ++ R+ R + E Sbjct: 87 PTQSVGGAVFSTDFESVDHLERMLSLDNAFSPEEMVEWNARVTRDAGSAFH----YLCEL 142 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVR 188 KIDG I + YEKG+ A RGDG +GEDV+ +R + IP L +P+++EVR Sbjct: 143 KIDGLAINLLYEKGRLTRALTRGDGRTGEDVTLNVRTVRGIPTELKGTKKHPVPDLVEVR 202 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVY F LN +++ G+ PYANPRN A+G LR+ +P +R L VHG+GK Sbjct: 203 GEVYFPIEAFGELNAQLVEAGKPPYANPRNTAAGSLRQRDPRVTASRELRMLVHGIGKRE 262 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 Q E ++ G PV+ R +T + + R + ++IDG+V KVD Sbjct: 263 GFALTRQSEAYAALQEWGMPVSTHFRVVDTIEEVNEFIVSTGEHRHDVEHEIDGVVVKVD 322 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E +Q+QLG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP ++PV + G+ Sbjct: 323 EIVVQRQLGATSRAPRWAIAYKYPPEEVNTVLLDIQVNVGRTGRVTPFGVMKPVVVAGST 382 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATLHN + + + +GD +++++AG+VIP+++ +V+ R + Sbjct: 383 VERATLHNATEVTR-----------KGVLIGDTIVLRKAGDVIPEILGPVVDLRDGSERA 431 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P CP C + + + RC +C +Q ERL R AF+IE LG Sbjct: 432 FVMPVDCPSCGTPLA-----PAKEGDKDIRCPNSRSCPSQLRERLSGLAGRGAFDIEALG 486 Query: 488 KQQLDFFFKSEDPA------FSIRIPADIFTLQRRQQTSTTKIENIL--GFGDVSVTNLY 539 + +S L R T + ++ L Sbjct: 487 WEGSVALLESGVLTDESTLFGLTDADIARVPLYTRAAKKTDSEDAVIDGRVPSAIGAKLV 546 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 ++ + L R + L IRHVG AR+LA+++ S L Sbjct: 547 ANLESAKTQPLWRVLVGLSIRHVGPTAARALAQHFGSMDGIRAAT----------VEELS 596 Query: 600 RVPLVGDIIAQAIVEFYQ---NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 V VG IIA+++ +++ N ++ V+ + + ++ +E +V TG Sbjct: 597 GVEGVGGIIAESVRDWFDREGNEWHVAIVDQWAADGVRMEDERDTSIEQTLEGLTVVVTG 656 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +++ R +A+E + G S +S+KTD ++VG GSK KA++LG+ I++E F+ Sbjct: 657 SMEGFTRDEAKEAILSRGGKASGSVSKKTDYVVVGPGAGSKEAKARELGLTILDEAGFVT 716 Query: 717 LLQQYNTTLRIHDD 730 LL+ D Sbjct: 717 LLESGAAEGSSAQD 730 >gi|258404928|ref|YP_003197670.1| DNA ligase, NAD-dependent [Desulfohalobium retbaense DSM 5692] gi|257797155|gb|ACV68092.1| DNA ligase, NAD-dependent [Desulfohalobium retbaense DSM 5692] Length = 678 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 245/721 (33%), Positives = 387/721 (53%), Gaps = 57/721 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + + ++SL + I +HD YY P I D+EYDAL + A+ H +P+L +DP Sbjct: 1 MAEQSVQSRVASLRETIRHHDYLYYVLDAPQISDNEYDALFKELQALEHRYPEL---DDP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P ++G + + HS+P SL+ ++++E+ + ++ R+ R I F ++ Sbjct: 58 ASPTKRVGQKPLAAFAHREHSLPMASLDNVFSLEEFQTYVQRLERLL---PGEEITFWVD 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188 PK+DG + + +E G++V A RGDG GEDV+A +R + T+P L E+ IEVR Sbjct: 115 PKMDGLAVEVIFEAGRYVAACTRGDGRVGEDVTAQMRTVRTVPLQLREEGVEVPDYIEVR 174 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEV + ++DF LN G +P+ANPRNAA+G +R+L+P R L FF +G+G Sbjct: 175 GEVVMHEDDFALLNKRQTENGARPFANPRNAAAGSVRQLDPEVTAKRPLRFFAYGVGVVR 234 Query: 248 EI----FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 Q E++Q +R LG PV R A + + +YY ++ + R +L ++IDG+V Sbjct: 235 WSGAKTVWSRQSEVMQGLRELGLPVAPKARWAESAAAVQTYYQDLGANRHSLGFEIDGVV 294 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KVD Q +LG +R+PRW ++ KF QA T L DI +Q+GRTG+LTPVA L PV + Sbjct: 295 AKVDRLEQQHRLGSTSRAPRWALALKFPAHQAETVLEDIQVQVGRTGVLTPVAVLRPVEV 354 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++ ATLHNED I+ + +RVGD VLV+RAG+VIP+VV + ++R Sbjct: 355 GGVTVSRATLHNEDEIR-----------AKGLRVGDPVLVQRAGDVIPEVVRPLTDKRTG 403 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + + F FP CP C S V R + A RC AC AQ +++L HFVS+ +I Sbjct: 404 EEKTFVFPQTCPACGSPVSRLGDE------VARRCVNA-ACPAQVVQQLIHFVSKAGLDI 456 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGLG++ + F +R PAD+F L+ R + GD S N+ +I Sbjct: 457 EGLGERWVQIFVDQ----GLVRSPADLFRLKERDLV------PLERMGDKSARNMIQAIA 506 Query: 544 KRRNISL-ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 ++ + ++ I +LGIR VG A LA + + A+ D +L +P Sbjct: 507 SAKSSARLDQLISALGIRLVGRRTAEILATSFEDLEALAEA----------DSETLQHIP 556 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH----EKNVSSEIENKKLVFTGTL 658 +G +A ++ F+ P N + L + + + S+ +E + V TG L Sbjct: 557 DIGPEVAASLRRFFTTPANQALIRDLHQLGVWPRRETGNGSDADQSAPLEGLRFVLTGAL 616 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R A++ + G V + +S K D ++ G+NPGSKL+KA++L + +++E LL Sbjct: 617 SDMSRSAAKDAIESRGGKVVSAVSSKVDYVVAGENPGSKLDKARELDIAVLDETGLHDLL 676 Query: 719 Q 719 Sbjct: 677 A 677 >gi|270292770|ref|ZP_06198981.1| DNA ligase, NAD-dependent [Streptococcus sp. M143] gi|270278749|gb|EFA24595.1| DNA ligase, NAD-dependent [Streptococcus sp. M143] Length = 652 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 214/700 (30%), Positives = 359/700 (51%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K ++ L ++ + YY P + DSEYD L R + A+PD + + P +++ Sbjct: 3 KRMNELVALLNRYASEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLA---DSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 60 GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKELPHP-----TYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YEKG V A RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 115 ISLTYEKGILVAGATRGDGSIGENITENLKRVKDIPLTLPEKL--DITVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q ++L Sbjct: 173 DLVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKVL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN A I ++ E+ R LPYDIDG+V KV++ + Q++LG Sbjct: 232 KHLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLAGQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCD 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S+++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 400 SQLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A ++ ADI+ L+ + G + S + LY +I + S E+ +F LG Sbjct: 450 -AANLVKDVADIYRLKEEDF------LLLEGVKEKSASKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG++ ++ L +++ S +N AQ D + + +G +IA+++ F+ Sbjct: 503 IRHVGSKASQLLLQHFHSIENLAQA----------DPEEVASIESLGSVIAKSLQTFFAT 552 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + ++ L + + + + +V TG L++++R +A+ + LGA V Sbjct: 553 EGSKILLDELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KTD+++ G + GSKL+KAQ+LG+++ +E L Sbjct: 613 TGSVSKKTDLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652 >gi|260577534|ref|ZP_05845474.1| DNA ligase [Corynebacterium jeikeium ATCC 43734] gi|258604338|gb|EEW17575.1| DNA ligase [Corynebacterium jeikeium ATCC 43734] Length = 688 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 200/716 (27%), Positives = 337/716 (47%), Gaps = 57/716 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + L ++ +H YY Y +P I D+++DAL + + A P++ P + Sbjct: 4 QSRWQELADQVRHHRQLYY-YGEPEISDADFDALLQELKDLEQAHPEVVTGA---SPTEE 59 Query: 78 IGGEM--NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 + + V H LSL+ +++ E L ++ R + + E KID Sbjct: 60 VAPAPPTSSPFRNVDHREQMLSLDNVFDTEQLAGWLDRT---------PAKTYLTELKID 110 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRGEV 191 G I + Y G+ A RGDG +GED++ R + IP L PE++E+RGEV Sbjct: 111 GASINLLYIDGQLELALTRGDGTTGEDITHNARTLDDIPDTLHGTDEFPVPELVEIRGEV 170 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 +I DF A+N + A G K +ANPRNAA+G +R+ N R L HG+G Sbjct: 171 FIDVEDFAAMNAQRQAEGLKMFANPRNAAAGAMRQKNSADTAKRPLKLICHGIGAREGFS 230 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q++ + + G PV+ +Q ++ + + R +++DGLV KVD Sbjct: 231 PASQHDAYRAIAAWGLPVSPYTKQVHSAKEVQQQVEYWGNHRHDAAHEMDGLVVKVDSLE 290 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q +LG +R+PRW I++K+ ++A T L +I + IGRTG TP A +EP + G+ ++ Sbjct: 291 EQLELGHTSRAPRWAIAYKYPPEEAMTTLHNIRVGIGRTGRATPYAVMEPKYVAGSTVSM 350 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN + + +GD + +++AGEVIP+V+ + ++R +PF F Sbjct: 351 ATLHNPTEAHR-----------KGVMLGDTITIRKAGEVIPEVLGPVEDKRTGAERPFLF 399 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 +FCP C +R+ + A RC C Q RL + SR AF+I+ LG++ Sbjct: 400 STFCPECGTRLA-----PSKVGDADWRCPNTQYCPGQLHTRLTYLASRKAFDIDALGEKG 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 S + +++F L T+ G + S L + + + L Sbjct: 455 AYDLIHS----GVLADESELFDLSAEDLEKTSSYATKAGKLNKSGETLLEKLQSAKEADL 510 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R + +L IRHVG A++LAK++ S ++ A + + V + IA+ Sbjct: 511 WRVLVALSIRHVGPTAAKALAKHFESVEDIASA----------SVEEMAGIDGVAETIAE 560 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-------SSEIENKKLVFTGTLQKIQR 663 +I +++ + V+ + S+ +E +V TG+L+ R Sbjct: 561 SISDWFTVDWHRRIVDRWAAAGVRMHQEAGEASGEADGVDSALLEGLTIVVTGSLEDFDR 620 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + G + +S+KTD ++ G+ GSKL+KA+ LGV +++E F LL+ Sbjct: 621 TAAKEAIEARGGKAAGSVSKKTDFLVAGEKAGSKLKKAEDLGVPVLDEAGFKELLE 676 >gi|314919398|gb|EFS83229.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA1] Length = 740 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 210/746 (28%), Positives = 338/746 (45%), Gaps = 74/746 (9%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +AR + L Q I D YY P I D+EYD L + P+L P+ P Sbjct: 18 AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 74 Query: 75 LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G V H LSL+ ++ ++L +++ R+ K + F E K Sbjct: 75 TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 130 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192 IDG + + Y G+ V A RGDG GEDV+A +R I IPR L+ + +EVRGEV+ Sbjct: 131 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 190 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 DF LN +I G+ P+A PRNAA+G LR+ + +R L+ VHG+G Sbjct: 191 FPVADFTDLNAALIEAGKNPFATPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 250 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q K+ G PV+ + + + R + IDG+V KVD+ SL Sbjct: 251 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 310 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + A Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 370 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN +K + + +GD V++++AG+VIP+++ +V R+ + F P Sbjct: 371 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 420 DHCPSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474 Query: 492 DFFFKSED----------------------PAFSIRIPADIFT----LQRRQQTSTTKIE 525 E+ A + D +RR+ Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGPW 534 Query: 526 NILGFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 + + ++D + K ++ L R + +L IRHVG AR+LA + Sbjct: 535 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + S + + L V VG+IIA+++ +++ + + Sbjct: 595 FGSVEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 644 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG+N Sbjct: 645 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GSK KA+ LG I++E F LL+ Sbjct: 705 AGSKETKARDLGRPILDEAGFRDLLE 730 >gi|312867643|ref|ZP_07727849.1| DNA ligase (NAD+) [Streptococcus parasanguinis F0405] gi|311096706|gb|EFQ54944.1| DNA ligase (NAD+) [Streptococcus parasanguinis F0405] Length = 652 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 213/701 (30%), Positives = 351/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L + ++ + YY P + DSEYD L R + A PD P P ++ Sbjct: 2 KTRMKELVELLNRYAYEYYTKDTPSVSDSEYDQLYRELVELETAHPDEIL---PESPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + SI + E KIDG Sbjct: 59 VGGVVLKGFTKYQHQYPLYSLQDAFSREELEAFDQRVRK-----EFPSISYVCELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G V A RGDG GED++ ++ + IP VL + I VRGE Y+ + Sbjct: 114 SISLTYENGVLVTGATRGDGSVGEDITENLKRVKDIPLVLPEPVN--ITVRGECYMPRAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N G +ANPRNAA+G LR+L+ + N + S Q + Sbjct: 172 FDRVNQIRQENGEPEFANPRNAAAGTLRQLDTKIV-AKRNLATFLYQEVSPTDQSSQEGV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+K+ LGF VN A I + ++ +R LPYDIDG+V KV++ ++Q++LG Sbjct: 231 LEKLARLGFVVNQERVLAEDMEQIWDFIQKVAQLREDLPYDIDGIVIKVNDLAVQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++P+W +++KF ++ ++L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPKWAVAYKFPAEEKEAKILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DI D V+V +AG++IP V+ ++ ++R D + P+ CP C Sbjct: 351 YI-----------AEKDIHQNDTVIVYKAGDIIPAVLRVVKDKRVSDQAL-AIPTHCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 QS ++ + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 399 QSELLHFEDE------VALRCINPL-CPAQIKEGLNHFASRDAMNITGLGPAVVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + A I+ L + + GF + S LY++I + S E+ +F L Sbjct: 450 --AAQLVEDVAGIYRLTVEDLLT------LEGFKEKSAEKLYEAIQASKENSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG+++++ L + + A D + + +G ++A+++ ++ Sbjct: 502 GIRHVGSKVSQILLQEFHDLDQLATA----------DPERIASIDSLGMVVAESLKRYFA 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + ++ L + + + + +V TG L+++ R +A+ + LGA Sbjct: 552 QEGSKRLLQELKEAGVNMDYLGEKVAADAALSGMTVVLTGKLERLTRSEAKAKLESLGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTD+++ G + GSKL KAQ+LG+++ +E L Sbjct: 612 VTGSVSKKTDLVVAGSDAGSKLTKAQELGIQVEDEAWLESL 652 >gi|124026855|ref|YP_001015970.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL1A] gi|166216227|sp|A2C5E6|DNLJ_PROM1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123961923|gb|ABM76706.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL1A] Length = 690 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 220/720 (30%), Positives = 358/720 (49%), Gaps = 59/720 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L ++ + YY P I D+ YD L R I + P L + P ++ Sbjct: 10 ERIKELRALLNKANYSYYVLDSPEIDDAVYDQLYRELIEIENIHPSLITD---DSPSQRL 66 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-----SIFFTLEPK 133 GG + V H+IP LSL+ +N+ +L + RI + ++ N + E K Sbjct: 67 GGVPSKGFKNVEHNIPLLSLDNAFNLNELESWYGRISKLISSENKNIKKVDDLELICELK 126 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVY 192 IDG I++RYE G AA RGDG +GED++ IR I TIP L N P +E+RGE + Sbjct: 127 IDGNAISLRYENGILTRAATRGDGKTGEDITTNIRTISTIPLRLLLENPPSWVEIRGEAF 186 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251 + N F LN E + +ANPRN+ +G LR+L+P +R L+FF + L Sbjct: 187 MPNNIFNKLNIERKNTDQPLFANPRNSCAGTLRQLDPKIVASRKLDFFAYSLYFPENWEP 246 Query: 252 KG--------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 Q E L+ ++ +GF VN T + YY + + L Y DG+V Sbjct: 247 TDNNFKKPISQSESLEFLKNIGFKVNTTYETTKTLNEANKYYKYWEVKKDFLAYATDGIV 306 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 K+D+F +Q LG ++PRW I+ K+ ++ +T+L I Q+GR+G +TPVA E + + Sbjct: 307 VKIDKFDIQNLLGATNKAPRWAIAVKYPAEEKATKLRKIIFQVGRSGAVTPVAEFESIEL 366 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G + ATLHN + L D+ D ++V++AGE+IP+V+ +I R Sbjct: 367 AGTSVNRATLHNAKRLASL-----------DLHYEDTIIVRKAGEIIPEVIRVIKEFRKV 415 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 DA+ P CP C S+++ + N A +C C A+ L+H+VS+ + NI Sbjct: 416 DAKLVQLPQNCPECNSKLILESNE------AITKCIN-YGCEAKLKGLLRHWVSKGSMNI 468 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +GLG++ ++ ++ AD++ L+ + + FG+ S NL IN Sbjct: 469 DGLGEKIINQLVNE----GYVKSIADLYKLE------IDSLLELERFGEKSANNLLIEIN 518 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + +N + + ++ LGI H+G A+SL+ + S + A + + + Sbjct: 519 ESKNKNWHKQLYGLGIPHIGEANAKSLSNNFNSIEEL-------NAIAKESPEKISNIYG 571 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-----EKNVSSEIENKKLVFTGTL 658 G+ + +IV+++ + N ++ L K + S+ N S+ + K V TGTL Sbjct: 572 FGNEMKDSIVKWFDDSNNQTLIKEL-KAIGFSLKESLDSNYNSNQSNVFDGKSFVLTGTL 630 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R +A+E + G VS+ +S+KTD ++ G+ GSKL KAQ+LGVKI+NE + LL Sbjct: 631 DSLTRDEAKELIESAGGKVSSSISKKTDFLVSGEKAGSKLNKAQELGVKIINENELKLLL 690 >gi|57234606|ref|YP_181338.1| DNA ligase, NAD-dependent [Dehalococcoides ethenogenes 195] gi|123759715|sp|Q3Z8W1|DNLJ_DEHE1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|57225054|gb|AAW40111.1| DNA ligase, NAD-dependent [Dehalococcoides ethenogenes 195] Length = 677 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 236/716 (32%), Positives = 363/716 (50%), Gaps = 57/716 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R E+ +L +EI+ H+ YY P I DSEYDAL RR + A P+L + + P + Sbjct: 5 RTEIENLRREINRHNQLYYVQDNPEISDSEYDALLRRLKELEEAHPELVTA---DSPTQR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G E + V H P LSL ++ +L + R+ + + + EPK+DG Sbjct: 62 VGAEPLKAFGIVNHPYPLLSLANAFSDTELEAWYLRVKKLLG---NAAFQIDCEPKMDGL 118 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + Y GKF A RGDG GE+++ +R I +IP + P + E+RGEVY+ K Sbjct: 119 AVALTYRNGKFTTGATRGDGFQGENITRNLRTIHSIPLNTEEDAPPVFEIRGEVYLPKEG 178 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQY 255 F LN E G +ANPRNAA+G LR+L+P+ R L+ F++ LG + + + Sbjct: 179 FAKLNRERADKGLSLFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYAEDSLLPDSHW 238 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 ++L+ LGF +N R NT YY EM R +LPY+ DG+V+KVD SLQ++L Sbjct: 239 QILEYFSRLGFKINPRNRLVNTLEEAKEYYREMAENRDSLPYEADGVVFKVDSVSLQQKL 298 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G+ R PRW I++KF +Q +T L I I +GRTG L P A LEPVN+GG ++ A+LHN Sbjct: 299 GDAGREPRWAIAYKFPAEQVTTLLRKIGISVGRTGTLNPYAILEPVNVGGVVVKQASLHN 358 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF-- 433 ED I +DIR GD V+++RAGEVIP+VV ++ +R P+++PFS Sbjct: 359 EDDI-----------LRKDIREGDTVVIQRAGEVIPEVVAPVLAKRSPESKPFSMEETLF 407 Query: 434 --------CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 CP+C + R A ++C AQ +L+HFVSR +I G Sbjct: 408 NPKLSRPACPVCGGEIYRPAGE-------AMHYCANVSCPAQFERQLEHFVSRGTMDIRG 460 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 +G+ + ++ +D++ L + G+ S N+ +I Sbjct: 461 IGESLSVILAQE----GLVKNVSDLYYLTAADL------LKLPRMGEKSADNIIKAIADS 510 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 ++ L+R IF LGIRHVG E A L+ Y A L +P +G Sbjct: 511 KSRPLDRVIFGLGIRHVGNETAALLSSRYGDIWALAGA----------GLDELQTIPDIG 560 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRH 664 IA +I ++ +NI + L + + + + V TG L + R Sbjct: 561 AKIASSIKAYFSEEKNIAVIRRLETAGVKLASDQKPSYKPLPLSGVEFVVTGKLDSLSRE 620 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +AQ+ + LG +++ T ++VG + GSKL KA+ +GVK ++E++F+ +L+Q Sbjct: 621 EAQQKIRSLGGTAKDNVTKATRYLVVGADAGSKLAKARSMGVKELSEQEFINMLEQ 676 >gi|302542307|ref|ZP_07294649.1| DNA ligase, NAD-dependent [Streptomyces hygroscopicus ATCC 53653] gi|302459925|gb|EFL23018.1| DNA ligase, NAD-dependent [Streptomyces himastatinicus ATCC 53653] Length = 740 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 215/741 (29%), Positives = 351/741 (47%), Gaps = 62/741 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR E + L +++ H YY PI+ D+E+D L RR +A+ P+L P+ P Sbjct: 12 EARDEHAKLAEQVEEHRFRYYVKDAPIVSDAEFDRLLRRLEALEEDHPEL---RTPDSPT 68 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+ G +V H LSL+ ++ ++L + RI + + F E K+D Sbjct: 69 QKVAGAYETEFTEVEHRERMLSLDNAFDDDELGTWADRIAKELG---TGAYHFLCELKVD 125 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYIS 194 G + + YE G+ AA RGDG +GED++ +R I IP L+ + P ++EVRGEV++ Sbjct: 126 GLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAKIPNRLTGDRVPALVEVRGEVFLP 185 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 + F LN ++ + P+ANPRNAA+G LR+ +P +R L+ VHG+G Sbjct: 186 RKAFEELNARLVEAEKPPFANPRNAAAGSLRQKDPKVTASRPLDMVVHGIGAREGFDIAR 245 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL--PYDIDGLVYKVDEFSL 311 + + + G P R +T G+ Y ++IDG V K+DE L Sbjct: 246 LSQAYELLHEWGLPTAAHFRVVDTIEGVREYIAHYGDSEHRHSVEHEIDGAVIKLDEIPL 305 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG +R+PRW I+ KF ++ +T+L+DI + +GRTG +TP A +EP+ + G+ + A Sbjct: 306 QGRLGSTSRAPRWAIAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPITVAGSEVEFA 365 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+D +K + + +GD V++++AG+VIP+++ + + R + F P Sbjct: 366 TLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMP 414 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C + + + RC +C AQ ER+ + R + +IE LG Sbjct: 415 AECPECGTPLQ-----PAKEGDVDLRCPNSRSCPAQLRERIFYLAGRKSLDIENLGYVAA 469 Query: 492 DFFFKSEDPA-FSIRIPADIFTLQRRQQTSTTKI------------------------EN 526 + +PA +R D+F L+ Q Sbjct: 470 AALTQPLEPAEPPLRDEGDLFDLKIEQLLPIRSYVLDPDSGLPKRDPETGEEKVVTFFAT 529 Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 G + + +I + L R I L IRHVG A +LA+ + S A+ Sbjct: 530 QKGEAKKNALAMLANIEAAKQRPLARIITGLSIRHVGPVAAAALAREFRSLDRIAEADEE 589 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-EKNVSS 645 +A VG IIA ++ +++ + VE + Sbjct: 590 ELAATE----------GVGGIIAASVKQWFAVDWHREIVEKWRRAGVRLEEEAGADEGPL 639 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 ++ +V TGTL+ R A+E + GA V+ +S+KTD ++VGDNPGSK +KA QL Sbjct: 640 PLKGLTVVVTGTLESHTRDGAKEALQNRGAKVTGSVSKKTDFVVVGDNPGSKYDKAMQLK 699 Query: 706 VKIMNEEQFLFLLQQYNTTLR 726 V +++++ F LL+Q R Sbjct: 700 VPVLDDDGFAVLLEQGPDAAR 720 >gi|322392021|ref|ZP_08065484.1| NAD-dependent DNA ligase LigA [Streptococcus peroris ATCC 700780] gi|321145119|gb|EFX40517.1| NAD-dependent DNA ligase LigA [Streptococcus peroris ATCC 700780] Length = 652 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 210/700 (30%), Positives = 357/700 (51%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + ++ L + ++ + YY P + DSEYD L R + A P+ PN P +++ Sbjct: 3 ERMNELVELLNRYATEYYTSDNPSVSDSEYDRLYRELVELEQAHPEQVL---PNSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + ++ + E KIDG Sbjct: 60 GGKILDGFEKYSHQYPLYSLQDAFSREELLAFDARVRKEL-----PNVTYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YE+G V A RGDG GE+++ ++ + IP L + + VRGE Y+ + F Sbjct: 115 ISLTYEQGVLVVGATRGDGSIGENITENLKRVKDIPLTLPEAL--DMTVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q ++L Sbjct: 173 DQVNQSRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRNSQEQVL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN A++ + + E+ R LPYDIDG+V KV++ Q+QLG Sbjct: 232 KHLEQLGFVVNPRRVLAHSMDEVWQFIQEVGQERDQLPYDIDGVVIKVNDLVGQEQLGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAKLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C+ Sbjct: 352 I-----------SEKDIRKDDTVIVYKAGDIIPAVLRVVESKRISEEKL-DIPTNCPSCE 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S+++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 400 SKLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNISGLGPSMVEKLF--- 449 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A ++ ADI+ L + G + + LY +I + S E+ +F LG Sbjct: 450 -AANLVKDVADIYRLTEHDF------LQLEGVKEKTAQKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG++ ++ L +++ S + AQ D + + +G +IA+++ ++ Sbjct: 503 IRHVGSKASKLLVQHFHSIETLAQA----------DPEEVSNIETLGSVIAKSLQTYFAT 552 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + + L + + + + +V TG L+++ R +A+ + LGA V Sbjct: 553 EGSKILLRELKELGVSLDYKGQVVAGDAALSGLTVVLTGKLERLNRSEAKSKLESLGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KTD+++ G + GSKL+KAQ+LG++I +E L Sbjct: 613 TGSVSKKTDLVVAGADAGSKLQKAQELGIEIRDEAWLEGL 652 >gi|227509971|ref|ZP_03940020.1| NAD-dependent DNA ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190577|gb|EEI70644.1| NAD-dependent DNA ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 675 Score = 507 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 237/719 (32%), Positives = 370/719 (51%), Gaps = 53/719 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E ++ +QA L ++++ D YY Y P + DS YD ++ + FP + Sbjct: 4 EDMTEQQAESAAQELREKLNKWADEYYTYDSPSVEDSVYDQTYQQLVDLETTFPQIV--- 60 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P K+G KV H IP LSL +++IE+L+ F R + + Sbjct: 61 TPDSPTQKVGDHTLPGFTKVPHEIPMLSLGDVFSIEELKAFADR----LSDSESVPFEYN 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG I++RYE G V A RG+G GED++ ++ I +IP+ L+ P IEVRG Sbjct: 117 CELKIDGLAISLRYEDGILVQGATRGNGQIGEDITRNLKTIKSIPQR--LSRPINIEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 E Y+ K F+ LN + G P+ANPRNAA+G LR+L+ R L+ F++ + + Sbjct: 175 ECYMPKESFVELNQQRQVEGVAPFANPRNAAAGSLRQLDSRVTAHRKLSTFMYNVANYDD 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + Q ML++++ LGF +N + A+ I Y R TL Y IDG+V KV+ Sbjct: 235 LESDTQSGMLEELKKLGFTINADYQVAHNMDDIDQYVERYTKQRDTLAYGIDGIVIKVNS 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 LQ+ LG + PRW I++KF ++A T + DI+ +GRTG++TP A ++ V + G + Sbjct: 295 LPLQRSLGATVKVPRWAIAYKFPPEEAETIVRDIEWTVGRTGVVTPTAVMDEVTLAGTTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN DY++ +DIR+ D V + +AG++IP++ + ++R D+QP+ Sbjct: 355 SRASLHNPDYLR-----------EKDIRISDTVKLHKAGDIIPEISTYVKDKRQVDSQPY 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C S +V A RC C AQ E L HF SRDA NI+GLG Sbjct: 404 EIPTKCPSCDSELVHLDEE------VALRCINPQ-CPAQLKEGLTHFASRDAMNIDGLGP 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + FK + A ++ L Q + + FG+ S NL +I RN Sbjct: 457 KIIAQLFKK----HMLTDVAGLYELTFDQLMT------LDKFGEKSAGNLLTAIANSRNN 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S ER +F LGIRHVGA+ AR +A+ + + + + +G II Sbjct: 507 SCERLLFGLGIRHVGAKAARLIAQRFKNIDKVMDAT----------AQEIAEIDTMGMII 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI-----GRHEKNVSSEIENKKLVFTGTLQKIQR 663 A ++V ++ P++ + L + K S K+LV TG LQ I R Sbjct: 557 ADSVVTYFSMPQSKELISQLKQVGVNMDYLGATDEDLKESDSVFNGKRLVLTGKLQHITR 616 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 +A ++ GA VS +S+KTDI++VG++PGSK +KA+ LG+++ +E +F + Sbjct: 617 PEATRWLENHGAKVSGSVSKKTDIVVVGEDPGSKYDKARNLGIEVWDENRFAEAMADEK 675 >gi|256390514|ref|YP_003112078.1| DNA ligase, NAD-dependent [Catenulispora acidiphila DSM 44928] gi|256356740|gb|ACU70237.1| DNA ligase, NAD-dependent [Catenulispora acidiphila DSM 44928] Length = 723 Score = 507 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 218/742 (29%), Positives = 345/742 (46%), Gaps = 63/742 (8%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 ++ + ++ ++L +EI YY P I D+++D R+ +AI A P+L Sbjct: 1 MDETTAATPAQQHAALAEEIENARYRYYVLDAPTISDADFDVKLRQLEAIEDANPEL--- 57 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ P K+ G V H LSL+ + E+L+ + RI + Sbjct: 58 RTPDSPTQKVAGAYETEFTSVPHLERMLSLDNAFTAEELQTWADRIEKDLGALP----EL 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEI 184 E K+DG I + YEKGK A RGDG +GED++ + I TIP+ L+ PE+ Sbjct: 114 LCELKVDGLAINLLYEKGKLTRALTRGDGRTGEDITPNAKTIQTIPQTLTGTDEFPVPEL 173 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +EVRGEVY + F N++++A + YAN RNAA+G LR+ +P R L+ VHG+ Sbjct: 174 VEVRGEVYFAVQAFDEWNEKILAETGRSYANARNAAAGSLRQKDPRVTAQRPLSMVVHGI 233 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G Q + +R G P ++ V+ T + Y + R + ++IDG+V Sbjct: 234 GARKGFTPTSQSHSYEALRAWGLPTSDRVKVVKTLKDVQKYIDYYNKHRHDVEHEIDGVV 293 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KVD +Q +LG +R+PRW I+ K+ ++ +T+LLDI +Q+GRTG +TP A +EPV + Sbjct: 294 VKVDALPIQGRLGSTSRAPRWAIAFKYPPEEVTTKLLDIRVQVGRTGRVTPYAVMEPVTV 353 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G+ + NATLHN + + + + +GD V++++AG+VIP++V + + R Sbjct: 354 AGSTVQNATLHN-----------QAIVVKKGLLIGDTVVLRKAGDVIPEIVGAVQDLRDG 402 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + F P CP C +++ + RC C Q ER+ SR+A +I Sbjct: 403 SEREFVMPENCPDCGTKLA-----PQKEGDIDLRCPNSQFCLGQIRERIDFMGSRNALDI 457 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS--------- 534 E LG + + + D+ +L+ +++ G Sbjct: 458 EALGYESAVALTQPAAGTAPVHDEGDLLSLKLEDLADLKMLQSKRGADAKPGETELVPYF 517 Query: 535 ----------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578 L + + L RF+ SL IRHVG AR LA+ + S+ Sbjct: 518 FTKGTPKKPSVPTATTELLLQQLELVKTDRPLWRFLVSLSIRHVGPTAARVLAREFPSFD 577 Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638 A L +G IA AIVE++ + + + Sbjct: 578 ALANATE----------EDLKAANGIGPTIATAIVEWFAVDWHRAIIGKWQAAGVVPVVE 627 Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698 + +E +V TGTL R A E +T GA VS +S+KT ++VGDNPG+K Sbjct: 628 SQPEGPRPLEGLSVVVTGTLAGFTRDGAAEELTSRGAKVSGSVSKKTSFVVVGDNPGTKY 687 Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720 +KA LGVK+++EE F LL Sbjct: 688 DKALSLGVKVLDEEGFKVLLGD 709 >gi|254383201|ref|ZP_04998554.1| DNA ligase [Streptomyces sp. Mg1] gi|194342099|gb|EDX23065.1| DNA ligase [Streptomyces sp. Mg1] Length = 736 Score = 507 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 212/742 (28%), Positives = 351/742 (47%), Gaps = 61/742 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 R++ + L +++ H YY +P++ D+E+D L R +A+ +P L P+ Sbjct: 14 PAAVREQHALLAEQVEEHRFRYYVNDQPVVSDAEFDQLLRSLEALEEQYPQL---RTPDS 70 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+ G V H LSL+ ++ E+L + R+ R D + + E K Sbjct: 71 PTQKVAGAYETDFASVQHRERMLSLDNAFDDEELAAWAERVARDANTSDYH---YLCELK 127 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG + + YE G+ AA RGDG +GED++ +R I IP L+ + P ++E+RGEV+ Sbjct: 128 VDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLTGDRIPALVEIRGEVF 187 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 F LN ++ KP+ANPRNAA+G LR+ +P +R L+ VHG+G Sbjct: 188 FPMEKFEELNARLVETEGKPFANPRNAAAGSLRQKDPKITASRPLHMVVHGIGAREGFDI 247 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + +R G P R ++ + + R ++ ++IDG+V K+DE L Sbjct: 248 DKLSHAYELLREWGLPTARHNRVVSSLAEVREFITHFGENRHSVEHEIDGVVVKLDEIPL 307 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG AR+PRW I+ K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ + A Sbjct: 308 QGRLGSTARAPRWAIAWKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVAGSEVEFA 367 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN++ +K + + +GD V++++AG+VIP+++ +V+ R + F P Sbjct: 368 TLHNQEVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMP 416 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG---- 487 + CP C + + + RC G C AQ ERL + R +IE G Sbjct: 417 AECPECGTPLRPM-----KEGDIDLRCPNGQTCPAQLRERLFYLGGRQCLDIENFGAVAA 471 Query: 488 --------------KQQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTSTTK-----IEN 526 + + D F + + I+ L +R + + N Sbjct: 472 AALTNPLEPAEPPLRDEGDLFGLTIEDLLPIKAYVLDGDSGLPKRDPKTGEEKIVTVFAN 531 Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 G + + ++I + L R I L IRHVG A +LA+ + S + Q Sbjct: 532 QKGEPKKNALAMLENIAAAKERPLARVINGLSIRHVGPVAAEALAREFRSIERIEQATE- 590 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--S 644 L VG IIA ++ E++ + + + Sbjct: 591 ---------EELAATDGVGAIIAASLKEWFAVDWHQEILRKWREAGVRMEEEGSGEEEGP 641 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 +E +V TGTL+ R A+E + GA V+ +S+KT ++VGDNPGSK +KA QL Sbjct: 642 RPLEGLTVVVTGTLESHTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAVQL 701 Query: 705 GVKIMNEEQFLFLLQQYNTTLR 726 + I+++ F LL+Q R Sbjct: 702 KLAILDDAGFAVLLEQGPDAAR 723 >gi|227889453|ref|ZP_04007258.1| NAD-dependent DNA ligase [Lactobacillus johnsonii ATCC 33200] gi|227849931|gb|EEJ60017.1| NAD-dependent DNA ligase [Lactobacillus johnsonii ATCC 33200] Length = 668 Score = 507 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 208/715 (29%), Positives = 362/715 (50%), Gaps = 50/715 (6%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + L+ +A +++ L +++ D YY P++ D+ YD + + FPDL + Sbjct: 1 MAVLTHSEASQKVDELRKKLDKWADDYYAKDAPVVEDAVYDKTYQELVELEQKFPDLVTA 60 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + ++GGE+ L KV H +P LS+ +++ ++L++F RI + + + + Sbjct: 61 ---DSITQRVGGEIKSDLSKVEHPVPMLSMGDVFSKDELKEFDERITKLVG----HPVAY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ Y GK A+ RG+G GEDV+A + I IP+ L + EVR Sbjct: 114 NVELKIDGLSLSLEYTNGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPEPL--TTEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+ K F LN E G + +ANPRNAA+G LR+L+ + Sbjct: 172 GECYMEKEAFATLNAERDEKGEQVFANPRNAAAGSLRQLDARITKKRNLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ + +M LGF N R+ + + + +E + R+ L Y IDG+V KVD+ Sbjct: 232 RNITSQHQAIDEMNRLGFHTNQSGRRFESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 SLQ +LG + PRW I++KF ++ T + +I+ +GRTG++TP A ++PV + G ++ Sbjct: 292 LSLQNELGNTVKVPRWEIAYKFPPEEQETVVRNIEWTVGRTGVVTPTAVMDPVKLAGTIV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN DY++ + +R+GD V + +AG++IP++ +++++R D++P+ Sbjct: 352 SRASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLSKRPKDSKPY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C +V + A RC + C AQ E + HF SR A NI GLG Sbjct: 401 EIPNVCPSCGETLVHLQDE------VALRCINPM-CPAQIEEGIIHFASRGAMNIMGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + I AD++ L Q + F + S+TNL SI + Sbjct: 454 RIVKQLIDK----GFINDVADLYHLTPDQL------GQLDHFKEKSITNLLSSIENSKQN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S E ++ LGI HVGA+ AR + + Y + + +Q L + +G+ I Sbjct: 504 SAELLLYGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIGETI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A+++ ++ P ++ L E+ + + K +V TG L R + Sbjct: 554 AESLTAYFNQPSAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKLSAFTRSE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + LGA V+ +S+KTD +I G + GSK +KA++L V ++ E++ + +++ Sbjct: 614 FTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKIEK 668 >gi|329667842|gb|AEB93790.1| NAD-dependent DNA ligase [Lactobacillus johnsonii DPC 6026] Length = 668 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 210/715 (29%), Positives = 362/715 (50%), Gaps = 50/715 (6%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + L+ +A +++ L +++ D YY P++ D+ YD + + FPDL + Sbjct: 1 MAVLTHNEASQKVDELRKKLDKWADDYYAKDAPVVEDAVYDKTYQELVELEEQFPDLVTA 60 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 N ++GGE+ L KV H +P LS+ +++ E+L++F RI + + + + Sbjct: 61 ---NSITQRVGGEIKSDLSKVEHPVPMLSMGDVFSKEELKEFDERITKLVG----HPVAY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ Y GK A+ RG+G GEDV+A + I IP+ L + EVR Sbjct: 114 NVELKIDGLSLSLEYTNGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPEPL--TTEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+ K F LN E G + +ANPRNAA+G LR+L+ + Sbjct: 172 GECYMEKEAFATLNAERDEKGEQVFANPRNAAAGSLRQLDARITKKRNLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ + +M LGF N R+ + + + +E + R+ L Y IDG+V KVD+ Sbjct: 232 RNITSQHQAIDEMNRLGFHTNQSGRRFESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 SLQ +LG + PRW I++KF ++ T + +I+ +GRTG++TP A ++PV + G ++ Sbjct: 292 LSLQNELGNTVKVPRWEIAYKFPPEEQETVVRNIEWTVGRTGVVTPTAVMDPVKLAGTIV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN DY++ + +R+GD V + +AG++IP++ +++++R D++P+ Sbjct: 352 SRASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLSKRPKDSKPY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C +V + A RC + C AQ E + HF SR A NI GLG Sbjct: 401 EIPNVCPSCGETLVHLQDE------VALRCINPM-CPAQIEEGIIHFASRGAMNIMGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + I AD++ L Q + F + S+TNL SI + Sbjct: 454 RIVKQLIDK----GFINDVADLYHLTPDQL------GQLDHFKEKSITNLLSSIENSKQN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S E ++ LGI HVGA+ AR + + Y + + +Q L + +G+ I Sbjct: 504 SAELLLYGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIGETI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A+++ ++ P ++ L E+ + + K +V TG L R + Sbjct: 554 AESLTAYFNQPSAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKLSAFTRSE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + LGA V+ +S+KTD +I G + GSK +KA++L V ++ E++ + +++ Sbjct: 614 FTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKIEK 668 >gi|194307280|gb|ACF42137.1| DNA ligase [Mycobacterium lepromatosis] Length = 686 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 224/711 (31%), Positives = 342/711 (48%), Gaps = 43/711 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++ L +E+ H YY PII D+E+DAL R + P+L P+ P Sbjct: 4 ELLRQWRKLAEEVREHQFRYYVRDAPIISDAEFDALLGRLTVLEEQHPEL---RTPDSPT 60 Query: 76 NKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 IGG H LSL+ + ++L +ITRI R + E K+ Sbjct: 61 QLIGGAGFTTDFVATEHLERMLSLDNASSEDELDAWITRIRREIGNDAH----YLCELKV 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGE 190 DG +++ Y G A RGDGH+GEDV+ R I +P L IPE++EVRGE Sbjct: 117 DGVALSLVYRNGLLNRATTRGDGHTGEDVTLNARTIEDVPERLTVSDIYPIPEVLEVRGE 176 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V+ DF ALN ++ G+ P+ANPRN+A+G LR+ +P R L HGLG Sbjct: 177 VFFRVTDFQALNTSLVEEGKNPFANPRNSAAGSLRQKDPAVTAHRTLRMICHGLGHIEGF 236 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q++ +R G PV++ N G+ R + ++IDG+V K+DE Sbjct: 237 RPATQHQAYLALRAWGLPVSDHTTLVNDIAGVQRRIAYWAEHRHEVDHEIDGIVVKIDEL 296 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG +R+PRW I++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ + Sbjct: 297 ALQRRLGSTSRAPRWAIAYKYLPEEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVG 356 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN +K + + +GD V++++AGEVIP++V +V+ R F Sbjct: 357 QATLHNASEVKR-----------KGVLIGDTVVIRKAGEVIPEIVGPVVDLRDGSESEFV 405 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + + + + RC +C Q ER+ H SR +I+GLG + Sbjct: 406 MPTTCPECGTTLAPE-----KEGDTDIRCPNARSCPGQLRERVFHVASRSVLDIQGLGYE 460 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 A I D+FTL T N G + L +++K + Sbjct: 461 AGVALL----AAQVITSEGDLFTLTEDDLLRTELFRNKAGKLSANGKRLLVNVDKAKTAP 516 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R + +L IRHVG AR+LA + S L V VG IA Sbjct: 517 LWRVLVALSIRHVGPTAARALAAEFGSIDAILAA----------SPEQLAAVEGVGAAIA 566 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 A+ E++ + V+ + + +V E +V TG+L R A+E Sbjct: 567 AAVTEWFAVDWHRAIVDKWRAAGVRMVDERDTSVPPTCEGLTIVVTGSLAGFSRDDAKEA 626 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G V+ +S+K ++VGD PGSK +KA +LGV I++E+ F LL+Q Sbjct: 627 IVARGGKVAGAVSKKIAYVVVGDLPGSKYDKAIELGVPILDEDGFRLLLEQ 677 >gi|320450863|ref|YP_004202959.1| DNA ligase, NAD-dependent [Thermus scotoductus SA-01] gi|320151032|gb|ADW22410.1| DNA ligase, NAD-dependent [Thermus scotoductus SA-01] Length = 674 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 241/712 (33%), Positives = 380/712 (53%), Gaps = 52/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++E+ARK ++ L I YH+ YY P I D+EYD L R + FP+L P Sbjct: 1 MTLEEARKRINELRDLIRYHNYRYYVLDAPEISDAEYDRLLRELKELEERFPELK---SP 57 Query: 72 NGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G + + + H SL+ + +E++R F RI R +K +T+ Sbjct: 58 DSPTEQVGAKPLEATFRPIRHPTRMYSLDNAFTLEEVRTFEERIERALGRK--GPFVYTV 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K+DG + + YE+G V+ A RGDG +GE+V+ + IPTIPR L PE +EVRGE Sbjct: 116 EHKVDGLSVNLYYEEGILVWGATRGDGETGEEVTQNLLTIPTIPRRLKGV-PERLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VY+ FL LN+E+ G K + NPRNAA+G LR+ +P R L + LG E Sbjct: 175 VYMPIEAFLRLNEELEEKGEKIFKNPRNAAAGSLRQKDPRITARRGLRATFYALGLGLEE 234 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K Q ++L +R GFPV +G +A G+ Y R +LP++ DG+V K+DE Sbjct: 235 SGLKTQLDLLHWLREKGFPVEHGFARAEGAEGVERIYQGWLKERRSLPFEADGVVVKLDE 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 SL ++LG AR+PR+ I++KF ++ TRLL + Q+GRTG +TPV LEPV I G+ + Sbjct: 295 LSLWRELGYTARAPRFAIAYKFPAEEKETRLLQVVFQVGRTGRVTPVGILEPVFIEGSEV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + TLHNE YI+ L D+R+GD VLV +AG VIP+V+ ++ +R + +P Sbjct: 355 SRVTLHNESYIEEL-----------DVRIGDWVLVHKAGGVIPEVLRVLKEKRTGEERPI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 +P CP C R+V++ HRC L C A++ E ++H+ SR A +I GLG+ Sbjct: 404 RWPETCPECGHRLVKE--------GKVHRCPNPL-CPAKRFEAIRHYASRKAMDIGGLGE 454 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + ++ AD++ L+ + G S NL I + R+ Sbjct: 455 KLIEKLLEK----GLVKDVADLYRLKEEDLVG------LERMGKKSAGNLLRQIEESRSR 504 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 LER +++LG+ VG +AR+LA ++ + + + +V VG++ Sbjct: 505 GLERLLYALGLPGVGEVLARNLAAHFGTMDRLLEASLEELL----------QVEEVGELT 554 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A+ I E Q+P + L + + + ++ V TG L + R + + Sbjct: 555 ARGIYETLQDPAFRDLIRRLKEAGVEMEAK--ERGEEALKGLTFVITGELSR-PREEVKA 611 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + +LGA V+ +SRKT ++VG+ PGSKLEKA+ LGV + EE+ L+++ Sbjct: 612 LLRRLGAKVTDSVSRKTSYLVVGEAPGSKLEKARALGVPTLTEEELYRLIEE 663 >gi|296116447|ref|ZP_06835061.1| putative DNA ligase [Gluconacetobacter hansenii ATCC 23769] gi|295977040|gb|EFG83804.1| putative DNA ligase [Gluconacetobacter hansenii ATCC 23769] Length = 709 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 278/710 (39%), Positives = 404/710 (56%), Gaps = 33/710 (4%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 +S QA EL+ L I+ D Y+Q PI+ D+ YDAL+RR + A P R Sbjct: 23 DMSASQAASELALLADVIAQLDRAYHQDDAPIVTDAVYDALRRRNSELEQAHP---RERR 79 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--SIFF 128 + P ++G + + + H P LSL+ +++ E+ FI+R RF D + F Sbjct: 80 DDSPDTRVGAAPSGAFRRHRHLTPMLSLDNVFSREEFEGFISRAARFLGLDDAQATQLDF 139 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 EPKIDG I++ YE FV RGDG GEDV+A +R + +P+ L P++IE+R Sbjct: 140 VAEPKIDGLSISLTYENRHFVRGTTRGDGTEGEDVTANLRTLRNMPQQLHGPAPDLIEIR 199 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEV+++K+DFL LN +A G+KP+ANPRNAA+G LR+L+ R L+ F + +G S Sbjct: 200 GEVFLAKSDFLTLNAAQVAAGQKPFANPRNAAAGSLRQLDAEITRQRPLSLFAYAVGYCS 259 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 A L+++ GF V+ + ++ + RS L YDIDG+VYK++ Sbjct: 260 APVADTHDLYLRQLGEWGFAVSPLCTRVANEAEAEAFMERIARERSALDYDIDGVVYKIN 319 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E +LQ++LG R+PRW ++ KFA +QA TRL IDIQ+GRTG LTPVA LEPVN+GG + Sbjct: 320 ERALQERLGFAGRAPRWAVAWKFAAEQAITRLTKIDIQVGRTGALTPVAILEPVNVGGVI 379 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +T A+LHNED I +D++ GD V ++RAG+VIP+V+D+++ R P Sbjct: 380 VTRASLHNEDEI-----------VRKDVQEGDLVRIQRAGDVIPQVLDVVLP-RDHSPHP 427 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP+C + R RC+GGL C AQ +ERL HFVSRDAF+IEGLG Sbjct: 428 FVFPHVCPVCHAHAERPEGE------VVWRCSGGLTCPAQLVERLIHFVSRDAFDIEGLG 481 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + + F + PADIF L ++ I G+G +S NL ++I RR Sbjct: 482 DRTIAEFHAD----GLLGTPADIFHLPTHEE----AIAVRPGWGTLSARNLMNAIAARRT 533 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 ISL RFI++LGIR +G AR LA++Y SY N+ Q++ +D+ L L + +G Sbjct: 534 ISLSRFIYALGIRRIGINTARLLARHYGSYDNWHQQMLRATTVGSDERLELGSITGIGTA 593 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 IA +V F+ N +E L V +I E + E+ K +VFTGTL + R +A+ Sbjct: 594 IADELVAFFIEAHNRQTLEDL-THVLEAITDEEMLAAGELSGKVIVFTGTLTTMSRPEAR 652 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 ++GA VS +SRKTDI+++G+ GSK KA +L + ++E + L Sbjct: 653 AIAERMGARVSDSVSRKTDIVVLGEKAGSKARKAAELNLHTVDEAGWRSL 702 >gi|81611354|sp|Q6A7A2|DNLJ_PROAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|50840696|gb|AAT83363.1| DNA ligase [Propionibacterium acnes KPA171202] Length = 772 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 212/748 (28%), Positives = 340/748 (45%), Gaps = 78/748 (10%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +AR + L Q I D YY P I D+EYD L + P+L P+ P Sbjct: 50 AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 106 Query: 75 LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G V H LSL+ ++ ++L +++ R+ K + F E K Sbjct: 107 TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 162 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192 IDG + + Y G+ V A RGDG GEDV+A +R I IPR L+ + +EVRGEV+ Sbjct: 163 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 222 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 DF LN +I G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Sbjct: 223 FPVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 282 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q K+ G PV+ + + + R + IDG+V KVD+ SL Sbjct: 283 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 342 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + A Sbjct: 343 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 402 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN +K + + +GD V++++AG+VIP+++ +V R+ + F P Sbjct: 403 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 451 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 452 DHCPSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 506 Query: 492 DFFFKSED----------------------PAFSIRIPADIFTLQRRQQTSTTKIENILG 529 E+ A + D L + K+ G Sbjct: 507 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLD--DLAEIKVWRRRKVNGGPG 564 Query: 530 FGDVSVT------------------NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 + ++D + K ++ L R + +L IRHVG AR+LA Sbjct: 565 PWQLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALA 624 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 ++ S + + L V VG+IIA+++ +++ + + Sbjct: 625 THFGSVEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAA 674 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG Sbjct: 675 GVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVG 734 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +N GSK KA+ LG I++E F +LL+ Sbjct: 735 ENAGSKETKARDLGRPILDEAGFRYLLE 762 >gi|306833158|ref|ZP_07466288.1| NAD-dependent DNA ligase LigA [Streptococcus bovis ATCC 700338] gi|304424732|gb|EFM27868.1| NAD-dependent DNA ligase LigA [Streptococcus bovis ATCC 700338] Length = 652 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 223/701 (31%), Positives = 354/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L E++ + YY +P + DSEYD L R + A P+L PN P + Sbjct: 2 KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELIL---PNSPTQE 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + + E KIDG Sbjct: 59 VGGLVLDGFEKYQHETPLYSLQDAFSREELEDFDRRVK-----AEFPNASYMAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y G A RGDG GE+++ ++ I IP L P I VRGE Y+ K Sbjct: 114 SISLVYVDGVLQVGATRGDGSVGENITENVKRIKDIPHK--LAQPLNITVRGEAYLPKTS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N+E G+ +ANPRNAA+G LR+LN T + N + + Q ++ Sbjct: 172 FDKINEERRDSGQTEFANPRNAAAGTLRQLN-TVVVAKRNLATFLYQEVASTSMTTQNDV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+++ GF VN ++ I + E+ + R LPYDIDG+V KV+ ++Q++LG Sbjct: 231 LEELSRYGFSVNPRRITTSSMADIWKFIQEVAAERDNLPYDIDGIVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+ ++ ++R P P CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVDSKR-GKQVPMPIPENCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S ++ + A RC L C +Q ERL HF SRDA NI GLG + FK+ Sbjct: 399 GSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKLFKA 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 E + ADI+ L S + GF + S LY++I + S ++ +F L Sbjct: 452 E----LVHDVADIYQLTVEDLLS------LDGFKEKSAEKLYNAIQVSKENSADKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVGA+ +R L + + + D S+ + +G +IA+++ ++ Sbjct: 502 GIRHVGAKASRQLLEVFETIDQLVAA----------DADSIASIDGLGTVIAKSLRSYFA 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + L + + +++ +V TG L+++ R++A+E + LGA Sbjct: 552 KEEATELLHELENAGVNFAYLGKKVSKDAQLAGLTVVLTGKLERLTRNEAKEKLQDLGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTDI++ G + GSKL KAQ LG+ + +E L Sbjct: 612 VTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDEAWLESL 652 >gi|161621794|ref|YP_056321.2| NAD-dependent DNA ligase LigA [Propionibacterium acnes KPA171202] gi|315106904|gb|EFT78880.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL030PA1] Length = 740 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 212/748 (28%), Positives = 340/748 (45%), Gaps = 78/748 (10%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +AR + L Q I D YY P I D+EYD L + P+L P+ P Sbjct: 18 AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 74 Query: 75 LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G V H LSL+ ++ ++L +++ R+ K + F E K Sbjct: 75 TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 130 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192 IDG + + Y G+ V A RGDG GEDV+A +R I IPR L+ + +EVRGEV+ Sbjct: 131 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 190 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 DF LN +I G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Sbjct: 191 FPVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 250 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q K+ G PV+ + + + R + IDG+V KVD+ SL Sbjct: 251 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 310 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + A Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 370 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN +K + + +GD V++++AG+VIP+++ +V R+ + F P Sbjct: 371 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 420 DHCPSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474 Query: 492 DFFFKSED----------------------PAFSIRIPADIFTLQRRQQTSTTKIENILG 529 E+ A + D L + K+ G Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLD--DLAEIKVWRRRKVNGGPG 532 Query: 530 FGDVSVT------------------NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 + ++D + K ++ L R + +L IRHVG AR+LA Sbjct: 533 PWQLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALA 592 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 ++ S + + L V VG+IIA+++ +++ + + Sbjct: 593 THFGSVEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAA 642 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG Sbjct: 643 GVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVG 702 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +N GSK KA+ LG I++E F +LL+ Sbjct: 703 ENAGSKETKARDLGRPILDEAGFRYLLE 730 >gi|289426325|ref|ZP_06428068.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK187] gi|295131143|ref|YP_003581806.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK137] gi|289153053|gb|EFD01771.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK187] gi|291375741|gb|ADD99595.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK137] gi|332676019|gb|AEE72835.1| DNA ligase [Propionibacterium acnes 266] Length = 753 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 211/746 (28%), Positives = 340/746 (45%), Gaps = 74/746 (9%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +AR + L Q I D YY P I D+EYD L + P+L P+ P Sbjct: 31 AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 87 Query: 75 LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G V H LSL+ ++ ++L +++ R+ K + F E K Sbjct: 88 TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 143 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192 IDG + + Y G+ V A RGDG GEDV+A +R I IPR L+ + +EVRGEV+ Sbjct: 144 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 203 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 DF LN +I G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Sbjct: 204 FPVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 263 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q K+ G PV+ + + + R + IDG+V KVD+ SL Sbjct: 264 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 323 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + A Sbjct: 324 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 383 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN +K + + +GD V++++AG+VIP+++ +V R+ + F P Sbjct: 384 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 432 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 433 DHCPSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 487 Query: 492 DFFFKSED----------------------PAFSIRIPADIFT----LQRRQQTSTTKIE 525 E+ A + D +RR+ Sbjct: 488 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGPW 547 Query: 526 NILGFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 + + ++D + K ++ L R + +L IRHVG AR+LA + Sbjct: 548 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 607 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + S + + L V VG+IIA+++ +++ + + Sbjct: 608 FGSVEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 657 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG+N Sbjct: 658 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 717 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GSK KA+ LG I++E F +LL+ Sbjct: 718 AGSKETKARDLGRPILDEAGFRYLLE 743 >gi|314957538|gb|EFT01641.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA1] Length = 724 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 211/746 (28%), Positives = 340/746 (45%), Gaps = 74/746 (9%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +AR + L Q I D YY P I D+EYD L + P+L P+ P Sbjct: 2 AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 58 Query: 75 LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G V H LSL+ ++ ++L +++ R+ K + F E K Sbjct: 59 TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 114 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192 IDG + + Y G+ V A RGDG GEDV+A +R I IPR L+ + +EVRGEV+ Sbjct: 115 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 174 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 DF LN +I G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Sbjct: 175 FPVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 234 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q K+ G PV+ + + + R + IDG+V KVD+ SL Sbjct: 235 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 294 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + A Sbjct: 295 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 354 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN +K + + +GD V++++AG+VIP+++ +V R+ + F P Sbjct: 355 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 403 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 404 DHCPSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 458 Query: 492 DFFFKSED----------------------PAFSIRIPADIFT----LQRRQQTSTTKIE 525 E+ A + D +RR+ Sbjct: 459 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGPW 518 Query: 526 NILGFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 + + ++D + K ++ L R + +L IRHVG AR+LA + Sbjct: 519 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 578 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + S + + L V VG+IIA+++ +++ + + Sbjct: 579 FGSVEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 628 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG+N Sbjct: 629 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 688 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GSK KA+ LG I++E F +LL+ Sbjct: 689 AGSKETKARDLGRPILDEAGFRYLLE 714 >gi|313763487|gb|EFS34851.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL013PA1] gi|313773641|gb|EFS39607.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL074PA1] gi|313801268|gb|EFS42519.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA2] gi|313808052|gb|EFS46533.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA2] gi|313811476|gb|EFS49190.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL083PA1] gi|313813500|gb|EFS51214.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL025PA1] gi|313816668|gb|EFS54382.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL059PA1] gi|313819621|gb|EFS57335.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL046PA2] gi|313826033|gb|EFS63747.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL063PA1] gi|313829503|gb|EFS67217.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL063PA2] gi|313831217|gb|EFS68931.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL007PA1] gi|313840009|gb|EFS77723.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL086PA1] gi|314914784|gb|EFS78615.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA4] gi|314920694|gb|EFS84525.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA3] gi|314930573|gb|EFS94404.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL067PA1] gi|314954471|gb|EFS98877.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL027PA1] gi|314961961|gb|EFT06062.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA2] gi|314963768|gb|EFT07868.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL082PA1] gi|314968405|gb|EFT12503.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA1] gi|314974093|gb|EFT18189.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL053PA1] gi|314976617|gb|EFT20712.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL045PA1] gi|314978931|gb|EFT23025.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL072PA2] gi|314984280|gb|EFT28372.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA1] gi|314986627|gb|EFT30719.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA2] gi|314990983|gb|EFT35074.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA3] gi|315079616|gb|EFT51609.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL053PA2] gi|315081153|gb|EFT53129.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL078PA1] gi|315087038|gb|EFT59014.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA3] gi|315089213|gb|EFT61189.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL072PA1] gi|315095437|gb|EFT67413.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL038PA1] gi|315099114|gb|EFT71090.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL059PA2] gi|315100402|gb|EFT72378.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL046PA1] gi|315109094|gb|EFT81070.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL030PA2] gi|327328505|gb|EGE70267.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL096PA2] gi|327329632|gb|EGE71388.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL096PA3] gi|327334143|gb|EGE75857.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL097PA1] gi|327444292|gb|EGE90946.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL043PA2] gi|327444828|gb|EGE91482.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL043PA1] gi|327446317|gb|EGE92971.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL013PA2] gi|327452096|gb|EGE98750.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL092PA1] gi|327454866|gb|EGF01521.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA3] gi|327457850|gb|EGF04505.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL083PA2] gi|328752459|gb|EGF66075.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL020PA1] gi|328755302|gb|EGF68918.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA1] gi|328758217|gb|EGF71833.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL025PA2] gi|328759940|gb|EGF73524.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL099PA1] Length = 740 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 211/746 (28%), Positives = 340/746 (45%), Gaps = 74/746 (9%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +AR + L Q I D YY P I D+EYD L + P+L P+ P Sbjct: 18 AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 74 Query: 75 LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G V H LSL+ ++ ++L +++ R+ K + F E K Sbjct: 75 TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 130 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192 IDG + + Y G+ V A RGDG GEDV+A +R I IPR L+ + +EVRGEV+ Sbjct: 131 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 190 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 DF LN +I G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Sbjct: 191 FPVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 250 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q K+ G PV+ + + + R + IDG+V KVD+ SL Sbjct: 251 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 310 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + A Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 370 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN +K + + +GD V++++AG+VIP+++ +V R+ + F P Sbjct: 371 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 420 DHCPSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474 Query: 492 DFFFKSED----------------------PAFSIRIPADIFT----LQRRQQTSTTKIE 525 E+ A + D +RR+ Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGPW 534 Query: 526 NILGFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 + + ++D + K ++ L R + +L IRHVG AR+LA + Sbjct: 535 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + S + + L V VG+IIA+++ +++ + + Sbjct: 595 FGSVEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 644 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG+N Sbjct: 645 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GSK KA+ LG I++E F +LL+ Sbjct: 705 AGSKETKARDLGRPILDEAGFRYLLE 730 >gi|313834239|gb|EFS71953.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL056PA1] gi|314924752|gb|EFS88583.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA3] Length = 740 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 211/746 (28%), Positives = 340/746 (45%), Gaps = 74/746 (9%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +AR + L Q I D YY P I D+EYD L + P+L P+ P Sbjct: 18 AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 74 Query: 75 LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G V H LSL+ ++ ++L +++ R+ K + F E K Sbjct: 75 TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 130 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192 IDG + + Y G+ V A RGDG GEDV+A +R I IPR L+ + +EVRGEV+ Sbjct: 131 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 190 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 DF LN +I G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Sbjct: 191 FPVADFTDLNAALIEAGKTPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 250 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q K+ G PV+ + + + R + IDG+V KVD+ SL Sbjct: 251 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 310 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + A Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 370 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN +K + + +GD V++++AG+VIP+++ +V R+ + F P Sbjct: 371 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 420 DHCPSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474 Query: 492 DFFFKSED----------------------PAFSIRIPADIFT----LQRRQQTSTTKIE 525 E+ A + D +RR+ Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGPW 534 Query: 526 NILGFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 + + ++D + K ++ L R + +L IRHVG AR+LA + Sbjct: 535 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + S + + L V VG+IIA+++ +++ + + Sbjct: 595 FGSVEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 644 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG+N Sbjct: 645 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GSK KA+ LG I++E F +LL+ Sbjct: 705 AGSKETKARDLGRPILDEAGFRYLLE 730 >gi|218961271|ref|YP_001741046.1| DNA ligase, NAD-dependent [Candidatus Cloacamonas acidaminovorans] gi|167729928|emb|CAO80840.1| DNA ligase, NAD-dependent [Candidatus Cloacamonas acidaminovorans] Length = 667 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 232/716 (32%), Positives = 367/716 (51%), Gaps = 57/716 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + + + L EI +H+ YY +KP I D EYD L + + + + A E Sbjct: 1 MNKNELKARIDRLRAEIEHHNRLYYTLAKPEISDYEYDMLVKELQELEAQYAEGAVEE-- 58 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P K+G ++ + H + SLE +++E++ FI R + + E Sbjct: 59 -SPTQKVGSDLTPGAKTIPHKVRMASLENAYSLEEVLAFINRTNNDLG----YASEYCAE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I + YE G F+YA RGDG GEDV+ R +P +P ++ IE+RGE+ Sbjct: 114 LKIDGFSINLYYENGNFIYATTRGDGLEGEDVTENFRLLPDVPFT--IDYKGAIEIRGEI 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT---- 246 YI DFLALN+ K +ANPRNAA+G ++ + + +R+L + LG Sbjct: 172 YIPVQDFLALNEFRRENELKTFANPRNAAAGSIKLKSREEVKSRHLKALFYALGYYETPL 231 Query: 247 --SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 Q +L + LGFP + + + +M+ R T+PYDIDG+V Sbjct: 232 QYKNEIIDKQTRLLDFLDELGFPTSKRT-LCKHYQEAEKFCLQMEQERYTIPYDIDGIVI 290 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ QK+LG A+SP+W I++KF ++ T L + Q+GRTG +TPVA L+PV I Sbjct: 291 KVNSLEDQKKLGWTAKSPKWAIAYKFKPEEKETVLESVSFQVGRTGAVTPVANLKPVFIS 350 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G+ +++ATLHN D IK L D+ GD VLV ++GE+IPK++ + V++R + Sbjct: 351 GSTVSHATLHNADEIKRL-----------DLHYGDTVLVVKSGEIIPKILSVNVSKRPVN 399 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+P FP+ CP+C + + RD + C AQ +L+HF SR+A +I Sbjct: 400 AKPVIFPATCPVCNAPLQRDEDGS-------INYCPNANCPAQIQRKLEHFASREAMDIY 452 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG + ++ I+ DI+ L KI + G S NL +I Sbjct: 453 GLGSSLIARLIET----GQIKWIPDIYHL------DYNKIAEMERMGKKSADNLQKAIEA 502 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + + +R +F+LGIRH+G+ AR+LA+++ + L+ VP + Sbjct: 503 SKTKNFDRVLFALGIRHIGSITARTLAQHFKNIDALIMAKE----------EELLSVPDI 552 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G IIA++I+ F+ N +++L K V S+ + K + TGTL R Sbjct: 553 GSIIARSIIGFFSQKSNRELIDSLRK-VGLQFTYISPQSSAILAGKTFLITGTLPNYSRK 611 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQ 719 + +T+ G + + +S++ + +IVG+NPGSKL+KA QLG VKI++E + L +LQ Sbjct: 612 DMETLITEHGGKILSGVSKQLNYLIVGENPGSKLDKAHQLGTVKIISEAELLDMLQ 667 >gi|313822055|gb|EFS59769.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA1] gi|313823710|gb|EFS61424.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA2] Length = 740 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 210/746 (28%), Positives = 339/746 (45%), Gaps = 74/746 (9%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +AR + L Q I D YY P I D+EYD L + P+L P+ P Sbjct: 18 AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 74 Query: 75 LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G V H LSL+ ++ ++L +++ R+ K + F E K Sbjct: 75 TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 130 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192 IDG + + Y G+ V A RGDG GEDV+A +R I IPR L+ + +EVRGEV+ Sbjct: 131 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 190 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 DF LN +I G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Sbjct: 191 FPVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 250 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q K+ G PV+ + + + R + IDG+V KVD+ L Sbjct: 251 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVFL 310 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + A Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 370 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN +K + + +GD V++++AG+VIP+++ +V R+ + F P Sbjct: 371 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 420 DHCPSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474 Query: 492 DFFFKSED----------------------PAFSIRIPADIFT----LQRRQQTSTTKIE 525 E+ A + D +RR+ Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGPW 534 Query: 526 NILGFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 + + ++D + K ++ L R + +L IRHVG AR+LA + Sbjct: 535 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + S + + L V VG+IIA+++ +++ + + Sbjct: 595 FGSVEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 644 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG+N Sbjct: 645 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GSK KA+ LG I++E F +LL+ Sbjct: 705 AGSKETKARDLGRPILDEAGFRYLLE 730 >gi|254556107|ref|YP_003062524.1| DNA ligase (NAD+) [Lactobacillus plantarum JDM1] gi|300766626|ref|ZP_07076543.1| NAD-dependent DNA ligase LigA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180104|ref|YP_003924232.1| DNA ligase (NAD+) [Lactobacillus plantarum subsp. plantarum ST-III] gi|254045034|gb|ACT61827.1| DNA ligase (NAD+) [Lactobacillus plantarum JDM1] gi|300495726|gb|EFK30877.1| NAD-dependent DNA ligase LigA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045595|gb|ADN98138.1| DNA ligase (NAD+) [Lactobacillus plantarum subsp. plantarum ST-III] Length = 679 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 229/714 (32%), Positives = 375/714 (52%), Gaps = 53/714 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +++EQA E ++L Q ++ YY P + DS YD R + FP L Sbjct: 5 PNTMTVEQAADEAAALRQTLNEWRRQYYDEDAPNVEDSVYDQKYERLVELEQTFPQLV-- 62 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ P +GG + KVTH IP LSL +++ +L++F+ R ++ + + + Sbjct: 63 -TPDSPTQLVGGTVKAGFDKVTHEIPMLSLGDVFSQAELQEFVDR----LEQNVGHPVDY 117 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 E KIDG +++RYE G V + RG+G GED++A I+ I +IP L P I+VR Sbjct: 118 NCELKIDGLALSLRYEDGVLVQGSTRGNGTVGEDITANIKTIKSIP--QRLTRPLTIDVR 175 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247 GE Y+ K F ALN+ A G +ANPRNAA+G LR+L+ R L+ F++ + Sbjct: 176 GECYMPKAAFAALNERREAAGEPVFANPRNAAAGTLRQLDSRVVAERQLSTFMYNIADYE 235 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + A+ Q +ML + LGF +N + A++ + SY + ++ R L Y IDG+V K + Sbjct: 236 PLTARTQSDMLTEFADLGFAINPDFKVAHSMADVFSYIDHYQNERPELAYGIDGIVIKAN 295 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQ+ LG + PRW I+ KF + T L D++ +GRTG++TP A +EPV + G Sbjct: 296 PLPLQRSLGATVKVPRWAIAFKFPPDEQPTLLKDVEWTVGRTGVVTPTAVMEPVQLAGTT 355 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + A+LHN DY+ +D+R+GD VL+ +AG++IP++ + + +R DAQP Sbjct: 356 VARASLHNPDYV-----------AAKDVRIGDTVLLHKAGDIIPEISSVDLAKRPKDAQP 404 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P+ CP C + +V + A RC C AQ E L HF SR+A NI+GLG Sbjct: 405 LVIPTTCPSCGAPLVHLEDE------VALRCINPK-CPAQVQEGLVHFASRNAMNIDGLG 457 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + + + + + A ++ L + Q + + D S L +I++ R+ Sbjct: 458 PRIIAQLYANR----LVSDVAGLYRLTKAQLLT------LDKIKDKSAEKLLTAIDRSRD 507 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SLER +F LGIRHVGA++AR +A+++ + + + + +GD+ Sbjct: 508 NSLERLLFGLGIRHVGAKVARLIAQHFGTIEALMAASQ----------EEIAAIDSMGDV 557 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQ 662 IA A+V+++++ + L + + ++ +S K++V TG L+ Sbjct: 558 IANAVVQYFESDEVHTLIRELQAVNVNTTYQGPSATVAEDSNSWFAGKRVVLTGKLESFT 617 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 R A +++ GA V+ +S+KTD++I G + GSKL+KAQQL + + +E +F Sbjct: 618 RPDATQWLQAHGATVTGSVSKKTDLVIAGSDAGSKLQKAQQLDITVWDEARFSE 671 >gi|171779630|ref|ZP_02920586.1| hypothetical protein STRINF_01467 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281732|gb|EDT47166.1| hypothetical protein STRINF_01467 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 652 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 219/701 (31%), Positives = 355/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + L E++ + YY +P + DSEYD L R + A PDL P+ P Sbjct: 2 KERIQKLVDELNQYRKEYYTQDQPTVSDSEYDKLYRELVELEKANPDLIL---PDSPTQA 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + + E KIDG Sbjct: 59 VGGLILDGFEKYQHETPLYSLQDAFSREELDDFDRRVK-----AEFPNASYMAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +++ Y G A RGDG GE+++ ++ I IP L + I VRGE Y+ + Sbjct: 114 SVSLVYVDGVLQVGATRGDGSIGENITENVKRIKDIPHKLEEPL--TITVRGEAYLPRES 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N+E G+ +ANPRNAA+G LR+LN + N + + Q ++ Sbjct: 172 FDKINEERRESGQSEFANPRNAAAGTLRQLNTAVV-AKRNLATFFYQEVASTSMTTQNDV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+++ GF VN ++ I ++ E+ + R +LPYDIDG+V KV+ ++Q++LG Sbjct: 231 LEELSRYGFSVNPRRITTSSMEDIWAFIQEVAAERDSLPYDIDGIVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+ ++ ++R+ P P CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVESKRNK-QVPMPIPETCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S ++ + A RC L C +Q ERL HF SRDA NI GLG + F Sbjct: 399 GSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + ADI+ L + + GF + S LY++I + S E+ +F L Sbjct: 450 --TADLVHDVADIYRLSVEDLLT------LDGFKEKSAEKLYNAIQASKANSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVGA+ +R L + + S +N D ++ + +G +IA+++ ++ Sbjct: 502 GIRHVGAKASRQLLEVFESIENLVAA----------DEEAIANIDGLGTVIAKSLRSYFA 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + L + + +++ +V TG LQ++ R++A+E + LGA Sbjct: 552 KKEAEELLAELKNAGVNFAYLGKKVSKDAQLAGLTVVLTGKLQRLTRNEAKEKLQDLGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTDI++ G + GSKL KAQ LG+ + +E L Sbjct: 612 VTGSVSKKTDIVVAGADAGSKLTKAQALGIDVRDEAWLESL 652 >gi|220906114|ref|YP_002481425.1| NAD-dependent DNA ligase LigA [Cyanothece sp. PCC 7425] gi|254781305|sp|B8HV17|DNLJ_CYAP4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219862725|gb|ACL43064.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7425] Length = 738 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 219/747 (29%), Positives = 348/747 (46%), Gaps = 96/747 (12%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + R+ + L Q + YY PI+ D YD L R + +P+L P+ P Sbjct: 19 EIRQRVLELRQLVQRASYAYYVLDAPILEDVVYDQLYRELQDLETQYPELL---TPDSPT 75 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS-----IFFTL 130 ++G + V H IP SLE + + D++ + R R Q + S + Sbjct: 76 QRVGEQPATQFVSVQHRIPLYSLENAFAVADMQAWQDRWQRQGQAIGEQSATLRSPEYVC 135 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRG 189 E KIDG+ + + YE G V A RGDG GED++A +R I +IP L + P I+EVRG Sbjct: 136 ELKIDGSALALTYENGVLVRGATRGDGVYGEDITANVRTIRSIPLRLDWPDPPPIVEVRG 195 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT-- 246 E ++ + F LN E G +ANPRNAA+G LR+L+ R L+FF + L Sbjct: 196 EAFLPLDVFHRLNQEREQAGESLFANPRNAAAGTLRQLDARIVAKRRLDFFAYTLHLPLA 255 Query: 247 ------------------------------------------SEIFAKGQYEMLQKMRCL 264 + + Q++ L+ ++ + Sbjct: 256 SARSATQPAAAQQLDLLAVAQSDPAVAAQQLDLSSASQAESVTTHLPQTQWQSLELLQQI 315 Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 GF VN + T + YY+ R LPY DG+V K++ LQ+ LG + PRW Sbjct: 316 GFRVNPHRQLCPTLADVRQYYDHWNHGRLDLPYMTDGVVVKLNSLRLQEHLGFTQKFPRW 375 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384 I+ K+ +QA T +L+I + +GRTG LTPVA L PV + G ++ ATLHN D + L Sbjct: 376 AIAWKYEPEQAVTEVLNISVNVGRTGALTPVAELRPVQLAGTTVSRATLHNRDRLAEL-- 433 Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444 D+ +GD+V++ +AGE+IP+++ + R DA+P+ P+ CP C VV+ Sbjct: 434 ---------DLHIGDKVVIHKAGEIIPEILQVFPELRPADARPYQLPTHCPECGQPVVQP 484 Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504 ++ A RC +C A + H+V RDA +I+G+G++ + + Sbjct: 485 VDE------AVTRCLNV-SCPAIVRGAIVHWVGRDAMDIDGVGEKLVRQLVDR----GLV 533 Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564 AD++ L Q + + G+ + +I K ++ R ++ LGIRHVG+ Sbjct: 534 NSVADLYRLTVAQLLT------LERMGNKLAEKVVAAIAKSQSRPWSRVLYGLGIRHVGS 587 Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 A+ L + S + + V +G IAQ+IV+++Q P N Sbjct: 588 VNAQVLTTAFPSVERLMAA----------SAEDIEAVHGIGPEIAQSIVQWFQTPANHSL 637 Query: 625 VEALLKEVSP----SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680 +E L ++ + + K V TGTL + R +A+ + Q G V+ Sbjct: 638 IEQLSAAGVQLAQDTVAVPPSQLPQPLAGKTFVLTGTLPTLSRDEARSMIGQAGGKVTDS 697 Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVK 707 +S+KTD ++VG + GSKL+KA QLG+ Sbjct: 698 VSKKTDFLVVGADAGSKLDKAGQLGIP 724 >gi|330685564|gb|EGG97210.1| DNA ligase (NAD+) [Staphylococcus epidermidis VCU121] Length = 668 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 242/716 (33%), Positives = 374/716 (52%), Gaps = 53/716 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + Q + + L ++ + YY P + DSEYD L I P+ P+ Sbjct: 1 MSQLQNRVDELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIHIEEEHPEFK---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N EDLRKF RI K + + E K Sbjct: 58 PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRENIGK-----VEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++YE G+FV RGDG +GED++ +R I IP + + EVRGE Y+ Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLN--FEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + F+ LN+E G +P+ANPRNAA+G LR+L+ R L+ F++ + ++ A Sbjct: 171 PRKSFMNLNEEKEKNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSINDFTDFEAT 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q L ++ LGF N+ + + G++ Y + + R TLPYDIDG+V KV++ Q Sbjct: 231 TQSGALDELDQLGFKTNHERERVSDIDGVLKYIEKWTAERETLPYDIDGIVIKVNDLEQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++G +SPRW I++KF ++ T LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTELLDIELSIGRTGVVTPTAILEPVRVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V+VK+AG++IP+VV I++ R DA+ + P+ Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVVKKAGDIIPEVVKSIIDRRPEDAETYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLIEGLIHFVSRQAMNIDGLGTKIIQ 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++++ I+ ADIF + + G V NL ++I + ++ SLE Sbjct: 453 QLYEND----LIKDVADIF------YLEEEDLLPLERMGSKKVENLLEAIKQAKSQSLEH 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + +R LA+ Y + LI + +G +AQ++ Sbjct: 503 LLFGLGIRHLGVKASRVLAEKYETMDRLLTVTE----------EELIAIHDIGGKLAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SE-IENKKLVFTGTLQKIQRHKAQE 668 V + +N ++ L + + K K +V TG L+++ R++A + Sbjct: 553 VTYLENDDIRALIQKLKDKDVNMTYKGVKTTEIEGHPDFSGKTIVLTGKLEQMTRNEASQ 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 ++ GA V+ +++ TDI+I G + GSKL KA++ G +I EE+F + N Sbjct: 613 WLQMQGAKVTNSVTKSTDILIAGADAGSKLTKAEKFGTEIWTEEEFATKQNEINNE 668 >gi|325977951|ref|YP_004287667.1| NAD-dependent DNA ligase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177879|emb|CBZ47923.1| NAD-dependent DNA ligase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 652 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 223/701 (31%), Positives = 353/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L E++ + YY +P + DSEYD L R + A P+L PN P + Sbjct: 2 KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELIL---PNSPTQE 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + + E KIDG Sbjct: 59 VGGLVLDGFEKYQHETPLYSLQDAFSREELEDFDRRVK-----AEFPNASYMAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y G A RGDG GE+++ ++ I IP L P I VRGE Y+ K Sbjct: 114 SISLVYVDGVLQVGATRGDGSVGENITENVKRIKDIPHK--LAQPLNITVRGEAYLPKTS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N+E G+ +ANPRNAA+G LR+LN T + N + + Q ++ Sbjct: 172 FDKINEERRDSGQTEFANPRNAAAGTLRQLN-TVVVAKRNLATFLYQEVASTSMTTQNDV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+++ GF VN ++ I + E+ + R LPYDIDG+V KV+ ++Q++LG Sbjct: 231 LEELSRYGFSVNPRRITTSSMTDIWKFIQEVAAERDNLPYDIDGIVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+ ++ ++R P P CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVDSKRDK-QVPMPIPESCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S ++ + A RC L C +Q ERL HF SRDA NI GLG + FK+ Sbjct: 399 GSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKLFKA 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 E + ADI+ L S + GF + S LY++I + S ++ +F L Sbjct: 452 E----LVHDVADIYQLTVEDLLS------LDGFKEKSAEKLYNAIQVSKENSADKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVGA+ +R L + + + D S+ + +G +IA ++ ++ Sbjct: 502 GIRHVGAKASRQLLEVFETIDQLVAA----------DADSIASIDGLGTVIANSLRSYFA 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + L + + +++ +V TG L+++ R++A+E + LGA Sbjct: 552 KKEATELLHELKNAGVNFAYLGKKVSKDAQLAGLTVVLTGKLERLTRNEAKEKLQDLGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTDI++ G + GSKL KAQ LG+ + +E L Sbjct: 612 VTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDEAWLESL 652 >gi|330994412|ref|ZP_08318338.1| DNA ligase [Gluconacetobacter sp. SXCC-1] gi|329758538|gb|EGG75056.1| DNA ligase [Gluconacetobacter sp. SXCC-1] Length = 712 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 272/712 (38%), Positives = 395/712 (55%), Gaps = 37/712 (5%) Query: 13 SIEQ----ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 ++EQ A K L+ L + D Y+Q+ P++ D+ YD+L++ + FPDL R+ Sbjct: 23 TMEQDAPNAEKALTQLATLLPALDAAYHQHDAPLVDDATYDSLRQLNTRLEARFPDLRRT 82 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--SI 126 + P ++G + H +P LSL+ +++ E+ FI+RI RF ++ + Sbjct: 83 ---DSPAQQVGAPATGPFRRHRHMVPMLSLDNVFSREEFEGFISRIARFLGLDEEQARQL 139 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 F EPKIDG I++ YE G+FV RGDG GEDV+A +R + IP L P++IE Sbjct: 140 SFVAEPKIDGLSISLTYEHGRFVRGTTRGDGTEGEDVTANLRTLRDIPDQLPAPCPDVIE 199 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245 +RGEV++SK FL LN G +P+ANPRNAA+G LR+L+ R L+ F + G Sbjct: 200 IRGEVFLSKQAFLELNAAQERAGDRPFANPRNAAAGSLRQLDAGITARRPLSLFAYAAGY 259 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S A + L ++ GF VN Q ++ + RS L YDIDG+VYK Sbjct: 260 CSAPLAATHHGYLAQLAAWGFRVNPLSTQVKDAGAAEAFMERLTLERSALDYDIDGIVYK 319 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 +D+ +LQ++LG R+PRW ++ KF +QA TRL IDIQ+GRTG LTPVA LEPVN+GG Sbjct: 320 LDDRALQERLGFAGRAPRWAVAWKFPAEQAVTRLEKIDIQVGRTGALTPVAFLEPVNVGG 379 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++T A+LHNED I +DIR GD V V+RAG+VIP+V +++ R D Sbjct: 380 VMVTRASLHNEDEITR-----------KDIREGDLVHVQRAGDVIPQVTGVVLP-RDHDR 427 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ FP CP C + R RC+GGL C AQ +ERL HFVSRDAF+IEG Sbjct: 428 PPYRFPHVCPACGAHAERPEGE------VVWRCSGGLTCPAQVVERLIHFVSRDAFDIEG 481 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG + + F + +R PADIF L + +I + G+G VS NL +I R Sbjct: 482 LGDRTIVEFHE----LGWLRTPADIFRLDAHEA----EIASRDGWGRVSAHNLVTAIAAR 533 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R I L R I++LGIR +G AR LA++Y S N+ ++ +D L L + +G Sbjct: 534 RTIELSRLIYALGIRRIGINNARLLARHYGSLANWRAQMEKAAVIGSDARLELGSITGIG 593 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 IA +V F+ N ++ L V + + + + +VFTGTL + R + Sbjct: 594 TAIADELVAFFAEAHNRATLDDL-THVLDHVTDEQAVAEGTLSGRTIVFTGTLTTMTRPE 652 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 A+ +LGA VS +S KTD++++G+ GSK KA +LG++ M+E + L Sbjct: 653 ARAVAERLGARVSDSVSTKTDLVVLGEKAGSKARKAAELGIRTMDEAGWRVL 704 >gi|306825169|ref|ZP_07458511.1| NAD-dependent DNA ligase LigA [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432605|gb|EFM35579.1| NAD-dependent DNA ligase LigA [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 652 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 211/700 (30%), Positives = 358/700 (51%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + ++ L ++ + YY P + DSEYD L R + A+PD + + P +++ Sbjct: 3 ERMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLA---DSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 60 GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKEL-----PQPTYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YEKG V A RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 115 ISLTYEKGILVVGATRGDGSVGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRTSF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q ++L Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEVSPSTRDSQEKVL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN+ A + I ++ E+ R LPYDIDG+V KV++ + Q++LG Sbjct: 232 KHLEQLGFVVNSKRILAESMDEIWNFIQEVGQERDNLPYDIDGVVIKVNDLAGQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCD 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 +++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 400 CQLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A ++ ADI+ L + G + S + LY +I + S E+ +F LG Sbjct: 450 -AANLVKDVADIYRLNEDDF------LLLEGVKEKSASKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG++ ++ L +++ S +N AQ D + + +G +IAQ++ ++ Sbjct: 503 IRHVGSKASQLLLQHFHSIENLAQA----------DPEEVASIESLGSVIAQSLQTYFAT 552 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + ++ L + + + + +V TG L+++ R +A+ + LGA V Sbjct: 553 EGSKILLDELKEAGVNLDYKGQTVVADAVLSGLTVVLTGKLERLTRSEAKSKLESLGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KT++++ G + GSKL+KAQ+LG+++ +E L Sbjct: 613 TGSVSKKTNLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652 >gi|320008426|gb|ADW03276.1| DNA ligase, NAD-dependent [Streptomyces flavogriseus ATCC 33331] Length = 731 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 211/742 (28%), Positives = 346/742 (46%), Gaps = 61/742 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + R+ + L ++I H YY +P++ D+E+D R +AI H P+L P+ Sbjct: 14 PAEVRERHALLAEQIEEHRFRYYVKDQPVVDDAEFDRQMRALEAIEHEHPEL---RTPDS 70 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+ G V H LSL+ ++ +L + R+ + F E K Sbjct: 71 PTQKVAGPYTTEFTSVEHRERLLSLDNAFDDGELAAWAERVAKDVG---GGGYHFLCELK 127 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG + + YE G+ AA RGDG +GED++ +R I IP L + P ++E+RGEV+ Sbjct: 128 VDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPLRLKGDDIPALVEIRGEVF 187 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 F LN ++ G KP+ANPRNAA+G LR+ +P TR L+ VHG+G Sbjct: 188 FPMEAFEGLNARLVEAGDKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAREGFGI 247 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + +R G P + + + + R ++ ++IDG+V K+DE L Sbjct: 248 DRLSQAYDLLREWGLPTARHNKVVESLDEVREFIAWFGENRQSVEHEIDGVVVKLDEIPL 307 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ + A Sbjct: 308 QGRLGSTSRAPRWAIAWKYAPQEVNTKLVNIRVGVGRTGRVTPYAQVEPVEVAGSEVEFA 367 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN++ +K + + +GD V++++AG+VIP+++ +V+ R F P Sbjct: 368 TLHNQNVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEHAFVMP 416 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG---- 487 S CP C + + + RC +C AQ ER+ + R +I+ G Sbjct: 417 SECPECGTPLRPM-----KEADIDLRCPNARSCPAQLRERVAYLAGRKCLDIDHFGYVAA 471 Query: 488 --------------KQQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTSTTK-----IEN 526 + D F + + IR L +R + + N Sbjct: 472 AALTRPLEPEEPPLLDEGDLFGLTVEQLLPIRAYFLDPDSGLPKRDPKTGEEKIATVFAN 531 Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 G + + + I R L R + L IRHVG A LA+ + S + + Sbjct: 532 QQGEPKKNALGMLEGIAAARQAPLARILTGLSIRHVGPVAAVELARQFRSIERIDEASEE 591 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVS 644 +A VG IIA ++ +++ + + + E Sbjct: 592 ELAAA----------DGVGPIIAASVKQWFAEDWHREILRKWREAGVRMEDEGAGEDEGP 641 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 +E +V TGTL R A++ + LGA V+ +S+KT ++VGDNPGSK +KA QL Sbjct: 642 RPLEGLTVVVTGTLAAHTRDGAKDALQSLGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQL 701 Query: 705 GVKIMNEEQFLFLLQQYNTTLR 726 V +++EE F LL+Q R Sbjct: 702 KVPVLDEEGFAVLLEQGPDAAR 723 >gi|325125239|gb|ADY84569.1| DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 671 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 207/714 (28%), Positives = 357/714 (50%), Gaps = 49/714 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S+E+A++E+ L ++ YY+ P++ D YD R + A+ +L + Sbjct: 4 SLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYSELK---SAD 60 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 ++GGE+N L KV H +P LS+ +++ E+L +F R+ + + + + +E Sbjct: 61 SITQRVGGEVNSDLPKVEHPVPMLSMGDVFSKEELAEFDQRVQKAIG----HPVAYNVEL 116 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG +++ YE+G A+ RG+G GEDV+ ++ I +P+ L I EVRGE Y Sbjct: 117 KIDGLSLSLEYEEGCLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGECY 174 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 +SK F LN E G +ANPRNAA+G LR+L+P + Sbjct: 175 MSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPPAGID 234 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q++ + +M LGF N R+ + Y +E R +LPY IDG+V KVD+ +LQ Sbjct: 235 SQHQAICEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDDLALQ 294 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 LG + PRW I++KF ++ T + +I+ +GRTG++TP A ++PV + G+ + A+ Sbjct: 295 ADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVRLAGSTVARAS 354 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D + L D+R+GD V + +AG++IP++ ++++++R D+ P+ P+ Sbjct: 355 LHNPDLLAKL-----------DVRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPYEVPT 403 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +V A RC +C AQ E + HF SR A NI GLG + + Sbjct: 404 KCPSCGEDLVHLDEE------VALRCINP-SCPAQVEEGITHFASRQAMNIAGLGPKIVK 456 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + + AD++ L + + F + S+ NL +I++ R S+E Sbjct: 457 QLIAKD----LVHNVADLYYLTADDLS------QLDHFKEKSINNLLVAIDQSRKNSVEL 506 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGI +VG + A+ +A+ + + A L + +G IA+++ Sbjct: 507 VLFGLGIDNVGGKAAQLIARKFKNMSKIASA----------SVQELTAIDTIGMTIAESL 556 Query: 613 VEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++Q + L + G + + + K +V TG L R + + + Sbjct: 557 TAYFQPEEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAEFTKKL 616 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 LGA V+ +S+KTD ++ G++ GSKL KA+ L + + E + + +++ +T Sbjct: 617 QALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDTE 670 >gi|239944478|ref|ZP_04696415.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 15998] gi|239990936|ref|ZP_04711600.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 11379] gi|291447943|ref|ZP_06587333.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 15998] gi|291350890|gb|EFE77794.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 15998] Length = 743 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 208/733 (28%), Positives = 348/733 (47%), Gaps = 61/733 (8%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 R+ + L ++I H YY +P++ D+E+D L R +A+ +P L P+ P Sbjct: 17 VRETHALLAEQIEEHRFRYYVKDQPVVSDAEFDRLLRSLEALEDEYPPL---RTPDSPTQ 73 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++ G V H LSL+ ++ E+L + R+ + D + F E K+DG Sbjct: 74 QVAGPYITEFTSVEHRERMLSLDNAFDDEELAAWADRVAKETGTPDHH---FLCELKVDG 130 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISK 195 + + YE G+ AA RGDG +GED++ +R I IP L P ++E+RGEV+ Sbjct: 131 LAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLKGEDIPALVEIRGEVFFPM 190 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 F LN ++A KP+ANPRNAA+G LR+ +P +R L+ VHG+G + Sbjct: 191 EGFEELNARLVAADDKPFANPRNAAAGSLRQKDPKVTASRPLHMVVHGIGAHEGLRIDRL 250 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 + + G P R ++ G+ + R ++ ++IDG+V K+DE LQ + Sbjct: 251 SQAYDLLHSWGLPTARHNRVVDSLAGVREFIAYFGEHRHSVEHEIDGVVVKLDEIPLQGR 310 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ + ATLH Sbjct: 311 LGSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVEVAGSEVEFATLH 370 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N++ +K + + +GD V++++AG+VIP+++ +V+ R + F P+ C Sbjct: 371 NQNVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTEKAFEMPTHC 419 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + + + RC C AQ ER+ + R + +I+ G Sbjct: 420 PECGTELRPM-----KEGDIDLRCPNARTCPAQLRERVFYLAGRKSLDIDHFGYVAAAAL 474 Query: 495 FKSEDPAFSI-RIPADIFTLQRRQQTSTTKI------------------------ENILG 529 + +PA + + +D+F+L Q N G Sbjct: 475 TRPLEPAEPVLKDESDLFSLTIEQLLPIRAYVLDQDSGLPKRDPKTGEEKIATVFANQQG 534 Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 + + + I + L R + L IRHVG A+ LA+ + S + +A Sbjct: 535 EPKKNAVAMLEGIAAAKEAPLARILTGLSIRHVGPVAAQELARQFRSVDRIDEATEEELA 594 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEI 647 VG IA +I +++ + + + E + Sbjct: 595 AA----------DGVGPTIAASIKQWFAEDWHREILRKWREAGVRMADEGSDEDEGPRPL 644 Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 E +V TGTL R A+E + LGA V+ +S+KT ++VGDNPGSK +KA QL V Sbjct: 645 EGLTVVVTGTLAGHTRDGAKEALQTLGAKVTGSVSKKTAFVVVGDNPGSKYDKAMQLKVP 704 Query: 708 IMNEEQFLFLLQQ 720 +++E+ F LLQ Sbjct: 705 VLDEDGFAILLQD 717 >gi|294661389|ref|YP_003573265.1| hypothetical protein Aasi_1926 [Candidatus Amoebophilus asiaticus 5a2] gi|254781251|sp|C3L496|DNLJ_AMOA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|227336540|gb|ACP21137.1| hypothetical protein Aasi_1926 [Candidatus Amoebophilus asiaticus 5a2] Length = 671 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 224/714 (31%), Positives = 373/714 (52%), Gaps = 50/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + EQARKE+ L ++YH+ YY+ ++P I D E+D L + A+ + FPDL P Sbjct: 1 MDKEQARKEIKRLTALVAYHNKLYYEEAQPEISDYEFDQLLEKLIALENQFPDL---RLP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++GGE + V H P LSL ++ E++ +F+ R ++ +I F E Sbjct: 58 NSPTQRVGGEPSKKFATVYHQYPMLSLSNTYSAEEVMQFVKRAHKQL---PGATIEFFCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190 K DG I++ Y++GK RGDG G+D++ + IP IP+++ ++P EVRGE Sbjct: 115 LKFDGVAISLLYKEGKLDKVVTRGDGFKGDDITENAKQIPNIPQIIEHKDLPPAFEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 ++S DF LN + +A G +P ANPRNA +G L+ L T R+L+ +++ L T Sbjct: 175 AFMSLADFEKLNRDRLAHGLEPLANPRNATAGTLKTLKSTGPKRWLDCYMYSLLSTDMDL 234 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +Q + F V+ ++ T +++Y +S +++LP IDG+V KV++ Sbjct: 235 P-THEVCIQWLEKWCFHVSPTYKKCRTLEEVMAYIEYWESAKNSLPVAIDGVVIKVNDTL 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q +LG A+SPRW I++K+ + +T L +D Q+GRTG++TPVA L+P+ + G ++ Sbjct: 294 QQNKLGLTAKSPRWAIAYKYKPENLATILESVDYQVGRTGVITPVAHLKPILLAGTIVKR 353 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN I+ L D+ +GD V +++ GE+IPK+ V++R D++P F Sbjct: 354 ATLHNAGEIQRL-----------DLHLGDTVFIEKGGEIIPKITGTDVSKRSLDSEPVKF 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 + CP C + +V+ A + C C Q LKHFV R A +I +GKQ Sbjct: 403 VTHCPACGTELVKRYEK------ALYYCPNTKGCPYQLQGLLKHFVHRKAMDIRSIGKQT 456 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + PAD+++L+ + S + GF D++ N+ I + Sbjct: 457 IEMLINR----GLVHTPADLYSLKYQDIRS------LEGFKDLATRNVLSGIESSKQRPF 506 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F+LGIRHVG IA + +YY + LI +P +G IA Sbjct: 507 ERVLFALGIRHVGEVIADKITQYYTDIDTLSNAT----------VEDLIAIPFIGTEIAH 556 Query: 611 AIVEFYQNPRNICAVEALLKEVS----PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++ +++NP N+ ++ L + P + S + K V +GT Q +R + Sbjct: 557 SVTNYFENPENLALIDVLKQAGLQLSRPQLATVFATQSLPLSGKTFVISGTFQNFEREEL 616 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + + G + +S K + +I+G+NPG K+ +AQ LG+ +NE + L +L+ Sbjct: 617 KELIKKKGGGILTNISAKLNYLIIGENPGPGKVAQAQALGISTINETEILQMLE 670 >gi|289428790|ref|ZP_06430473.1| DNA ligase (NAD(+)) [Propionibacterium acnes J165] gi|289158188|gb|EFD06408.1| DNA ligase (NAD(+)) [Propionibacterium acnes J165] Length = 753 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 211/746 (28%), Positives = 339/746 (45%), Gaps = 74/746 (9%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +AR + L Q I D YY P I D+EYD L + P+L P+ P Sbjct: 31 AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 87 Query: 75 LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G V H LSL+ ++ ++L +++ R+ K + F E K Sbjct: 88 TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 143 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192 IDG + + Y G+ V A RGDG GEDV+A +R I IPR L+ + +EVRGEV+ Sbjct: 144 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 203 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 DF LN +I G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Sbjct: 204 FPVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 263 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q K+ G PV+ + + + R + IDG+V KVD+ SL Sbjct: 264 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 323 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + A Sbjct: 324 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 383 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN +K + + +GD V++++AG+VIP+++ +V R+ + F P Sbjct: 384 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 432 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + + N RC C +Q ER+ SR A +IE LG + Sbjct: 433 DHCPSCGVELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 487 Query: 492 DFFFKSED----------------------PAFSIRIPADIFT----LQRRQQTSTTKIE 525 E+ A + D +RR+ Sbjct: 488 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGPW 547 Query: 526 NILGFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 + + ++D + K ++ L R + +L IRHVG AR+LA + Sbjct: 548 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 607 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + S + + L V VG+IIA+++ +++ + + Sbjct: 608 FGSVEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 657 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG+N Sbjct: 658 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 717 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GSK KA+ LG I++E F +LL+ Sbjct: 718 AGSKETKARDLGRPILDEAGFRYLLE 743 >gi|253575959|ref|ZP_04853293.1| DNA ligase, NAD-dependent [Paenibacillus sp. oral taxon 786 str. D14] gi|251844753|gb|EES72767.1| DNA ligase, NAD-dependent [Paenibacillus sp. oral taxon 786 str. D14] Length = 672 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 196/717 (27%), Positives = 332/717 (46%), Gaps = 60/717 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 A + + L ++++ ++ YY +PII D EYD L A+ P+ P Sbjct: 2 DAMQRMEQLVEQLNRYNYHYYTLDEPIISDKEYDQLYDELTALEAE----TGITLPDSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-------NSIFF 128 ++GGE+ H P SL+K N E L + R+ + + + Sbjct: 58 GRVGGELLEGFKPHRHLAPLWSLDKAQNEEQLLNWNNRVLKLIADYNSKNPTTPLPDPTY 117 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E K DG + + Y G+ V AA RG+G GE + ++ I ++P + IEV+ Sbjct: 118 VVELKFDGLTLNLTYTDGQLVQAATRGNGVVGEGILPQVKTIKSVPLTIP-YRDGTIEVQ 176 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247 GE ++ + N+ +P N RNAA+G LR LNP R LN F + +G + Sbjct: 177 GEGIMNLSVLAKYNETA----AEPLKNARNAAAGALRNLNPRTTAERKLNAFFYNVGYSD 232 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + + EM+ ++ F VN V +F ++ +E+ R TL Y IDG V K+ Sbjct: 233 NLKFQDHREMMAFLKDNRFKVNPYVTYHASFDKVIGALHEIVEKRPTLDYLIDGAVIKIT 292 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + ++ LG + PRW ++ KF ++ +T L + +GRTG +TP+A++EPV + G Sbjct: 293 DMRTREVLGYTDKFPRWAVAFKFEAEETTTILESVSWNVGRTGKITPLAKVEPVELAGVT 352 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + N TL+N I+ + +G RV ++R+ +VIP+++ + +E Sbjct: 353 VQNCTLNNIGDIERKNLKYA---------LGTRVFIRRSNDVIPEILGKVPDEPEGGE-- 401 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 +P CP C + + + A C L C Q + R+ HF SRDA +IE Sbjct: 402 IIYPEVCPACGTPLEQR--------GAHLFCNNRLGCKPQIVARITHFASRDAMDIETFS 453 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ + ++R PAD++TL + FG+ L +I + Sbjct: 454 EKTAEQLHDE----LNLREPADLYTLTFDDLIK------LERFGEKKANKLLQAIEVSKG 503 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 L F+F+LGI + G + LA ++ S + L +P +G I Sbjct: 504 RDLASFLFALGIPNTGKSTTKVLADHFGSLEAVMSATT----------EELTALPDIGGI 553 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRH 664 +A +IV F+ +P + +L+ + S K +V TGTL ++ R Sbjct: 554 VADSIVNFFADPFYQAGIRKMLELGVSPKAPVKSAAPVTGSFFSGKTVVLTGTLHQMSRD 613 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFLLQQ 720 +A E + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ ++ +E + + LL + Sbjct: 614 EATERLEALGAKVTGSVSKKTDLVIAGEKAGSKLAKAQELGIPVIEDENELIRLLNE 670 >gi|86742328|ref|YP_482728.1| DNA ligase, NAD-dependent [Frankia sp. CcI3] gi|123750794|sp|Q2J6U3|DNLJ_FRASC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|86569190|gb|ABD12999.1| DNA ligase, NAD-dependent [Frankia sp. CcI3] Length = 706 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 226/700 (32%), Positives = 347/700 (49%), Gaps = 48/700 (6%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L +E+ H YY P I D+EYD L A+ PDL P+ P K+ G + Sbjct: 29 LARELDEHAYRYYVLDSPTISDAEYDRLMAELAALEERHPDL---RTPDSPTQKVAGSYS 85 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 V H LSLE +++ ++ ++ R+ R + + E KIDG + + Y Sbjct: 86 TLFTPVEHLERMLSLENVFDDDEFHQWAARVAR-----ESEVDAWLCELKIDGLAVDLVY 140 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDFLALN 202 E G V AA RGDG +GED++ IR + ++P L P ++EVRGEV+ F LN Sbjct: 141 EDGYLVRAATRGDGRTGEDITPNIRTLASVPVRLRGPRVPGLLEVRGEVFFPTAKFAELN 200 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 ++AVG KP+ANPRNAA+G LR+ +P TR L VHGLG Q + Sbjct: 201 AGLVAVGGKPFANPRNAAAGSLRQKDPRVTATRPLEMIVHGLGAQRGFEVTSQSAAYARF 260 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 LG PV T G++ Y + R + ++IDG+V KVD F+LQ++LG ++S Sbjct: 261 AELGLPVATHFEVLATVPGVLDYVHRWGDARHDVVHEIDGVVVKVDSFALQRRLGSTSKS 320 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW +++K+ ++ +T+L DI + +GRTG +TP LEPV + G+ + ATLHN D + Sbjct: 321 PRWAVAYKYPPEEVTTKLRDIRVNVGRTGRVTPFGELEPVLVAGSTVGLATLHNIDEV-- 378 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 G + + +GD V++++AG+VIP++V +V+ R + F P+ CP C + + Sbjct: 379 ---------GRKGVLIGDTVVLRKAGDVIPEIVGPVVDLREGSERAFVMPTRCPECGTEL 429 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 VR RC ++C AQ E + HF SR A +I+GLG + + A Sbjct: 430 VRPEGE------VDIRCPNTVSCPAQLRESIFHFASRGAMDIDGLGYETATALLE----A 479 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 +R DIF L E + GF + + + R+ L R + L IRH Sbjct: 480 GRVRDIGDIFHLTPE------SFEGLRGFAQKKIDQILRGVEAARHRPLWRLLVGLSIRH 533 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 VG AR+LA+ S + A L V VG IA A+++++ + R+ Sbjct: 534 VGPTAARALARELRSLEAIAAT----------SAEDLAAVEGVGPKIAGAVLDWFADERH 583 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 + + + + ++ +V TGTL R A+E V G V+ + Sbjct: 584 RDILARIAAGGARLADVGAEEGPRPLDGVTVVITGTLTDWSRDSAKEAVEARGGKVTGSV 643 Query: 682 SRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 SRKT ++VG +PG SK +KA+ L + +++E F LL Q Sbjct: 644 SRKTTAVVVGADPGASKYDKARSLRIPMLDEAGFAVLLAQ 683 >gi|169350953|ref|ZP_02867891.1| hypothetical protein CLOSPI_01730 [Clostridium spiroforme DSM 1552] gi|169292015|gb|EDS74148.1| hypothetical protein CLOSPI_01730 [Clostridium spiroforme DSM 1552] Length = 682 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 217/703 (30%), Positives = 356/703 (50%), Gaps = 47/703 (6%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 + L+Q+I YH+D YY P I D EYD + + A+ P+ + P K+G Sbjct: 24 RYNELKQKIMYHNDRYYNQDDPEISDYEYDMMMQELKALEKKHPEYI---TEDSPTQKVG 80 Query: 80 GEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GE + V H++P LSL+ +++ E++ +F+ + + F +E KIDG Sbjct: 81 GEAKREAGVLVRHNVPMLSLQDVFSKEEVEQFVKDMQEQL-----DDPTFVVEYKIDGLS 135 Query: 139 ITIRYEKGKFVYAALRGDGH-SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + +RY GK A RGDG GEDV+A + I + + L I E +EVRGEVY++ Sbjct: 136 LALRYVNGKLDVAITRGDGILQGEDVTANAKVIKDVKKKLKEPI-EYLEVRGEVYMTNEA 194 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N+ G+K +ANPRN A+G LR+L+ R L+ FV + E Sbjct: 195 FNQVNEMQEIKGKKTFANPRNCAAGTLRQLDSKITKERNLSMFVFNIQDVRGKQFVSHSE 254 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + ++ G V + T + E+ R L YDIDG V K+D F +++LG Sbjct: 255 GYEYLKKQGIKVIENYKICKTADEVWQAIEEIGENRDKLKYDIDGAVVKIDNFEDRRKLG 314 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ PRW I++K+ ++ T+LL+I++ +GRTG +TP A EP+ + G ++ ATLHN+ Sbjct: 315 NTAKVPRWAIAYKYPPEEKETKLLEIELSVGRTGRITPTAIFEPIRLCGTTVSRATLHNQ 374 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+I L DIR+GD ++V ++GE+IPKV ++ +R ++ P+ CP+ Sbjct: 375 DFIDDL-----------DIRIGDTIVVYKSGEIIPKVKRVVKEKRPTNSVPYVIGDRCPV 423 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + +R+ N K +C ++ + + +FV RDA +I+G G ++ Sbjct: 424 CNAPAIREGNNADIK-------CTNHSCPSKLVRNIVNFVGRDAMDIKGFGLAYVETLVS 476 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ +DI++L ++Q K S NL ++I K +N + + S Sbjct: 477 ----LGYIKDLSDIYSLIGKRQELLDKKVI---GLVKSTDNLLNAIEKSKNNDASKLLTS 529 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +VG A++L K + S N + LI V +GDI A AI+ ++ Sbjct: 530 LGISNVGKSAAKNLMKKFKSIDNLMNA----------SYAQLIEVNDIGDISAMAIINYF 579 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 +NP N ++ L +++ + V TGTL + R +A + + + G Sbjct: 580 KNPDNRIVIDKLKNYGVNMKIIEDQDSDDRFDGMTFVVTGTLPTLSRKEASDIIEKHGGK 639 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 VS +S+KT+ ++ G+N GSKL KAQ L VKI++EE +++ Sbjct: 640 VSGSVSKKTNYLLAGENAGSKLIKAQSLNVKIIDEETLFEMVK 682 >gi|172040410|ref|YP_001800124.1| NAD-dependent DNA ligase LigA [Corynebacterium urealyticum DSM 7109] gi|254781300|sp|B1VG01|DNLJ_CORU7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|171851714|emb|CAQ04690.1| DNA ligase [Corynebacterium urealyticum DSM 7109] Length = 712 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 206/733 (28%), Positives = 340/733 (46%), Gaps = 59/733 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + ++ SL ++ +H + YY Y P I D+E+DAL R ++ P+ Sbjct: 23 LAELAQQWQSLADQVRHHREVYY-YGNPEISDAEFDALLTRLQEFENSHPEAVTGP---S 78 Query: 74 PLNKIGGEM--NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P ++ + V H P LSL+ +++ E L ++ R + + E Sbjct: 79 PTTEVAPSPPESSPFRNVDHQEPMLSLDNVFDTEQLSSWLDRT---------PAKTYLTE 129 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP----RVLSLNIPEIIEV 187 KIDG I + Y G A RGDG +GED++ R + IP +PEI+E+ Sbjct: 130 LKIDGASINLLYRNGVLELALTRGDGTTGEDITHNARTLSDIPARLQPSEDFPVPEIVEI 189 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT 246 RGEV+I DF +N + A G+K +ANPRNAA+G +R+ +P + R L HG+G Sbjct: 190 RGEVFIRVEDFAKMNAQRQAEGQKMFANPRNAAAGAMRQKDPAETARRPLRLICHGIGAR 249 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 Q+ + + G PV+ +Q ++ ++ R +++DGLV KV Sbjct: 250 EGFTPASQHAAYEALAAWGLPVSPYTKQVHSAKEVLEQVAYWADHRHDADHEMDGLVIKV 309 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q++LG +R+PRW I++K+ ++A TRL DI + IGRTG TP A +EP + G+ Sbjct: 310 DDTESQQRLGTTSRAPRWAIAYKYPPEEARTRLHDIRLGIGRTGRATPYAVMEPKYVAGS 369 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +T ATLHN + +R+GD +++++AGEVIP+V+ + + R+ + Sbjct: 370 TVTMATLHNPSEAHR-----------KGVRLGDEIMIRKAGEVIPEVLGPVEDARNGAER 418 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F F S CP C + + A RC C Q RL + R AF+I+ L Sbjct: 419 EFLFSSLCPECGTPLAPARG-----DDADWRCPNTRYCPGQLHTRLTYIAGRGAFDIDAL 473 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++ S + +F+L T G + L ++ + Sbjct: 474 GEKAAYDLIHS----GVLPDETGLFSLTEEDLRRTDAYTTKSGALNKQGETLLTTLAAAK 529 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + L R I +L IRHVG A++LA +Y S + A D ++ V VG Sbjct: 530 EVDLWRVIVALSIRHVGPTAAKALANHYGSIPDVAAA----------DVETMSTVDGVGP 579 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN---------VSSEIENKKLVFTGT 657 IIA+++ +++ + V+A + + + +V TGT Sbjct: 580 IIAESVRDWFAVSWHQEIVDAWAAAGVRMEQDVTEQPSADAAGSIQADLLAGLSIVVTGT 639 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L+ R A+E + G + +S+KTD ++ G GSKL KA++LG+ +++E F L Sbjct: 640 LEDFDRSSAKEAIESRGGKATGSVSKKTDYLVAGAKAGSKLTKAEELGIPVLDEAGFHKL 699 Query: 718 LQQYNTTLRIHDD 730 L + +D Sbjct: 700 LSEGPGKGDAEED 712 >gi|313793877|gb|EFS41901.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA1] Length = 740 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 211/746 (28%), Positives = 340/746 (45%), Gaps = 74/746 (9%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +AR + L Q I D YY P I D+EYD L + P+L P+ P Sbjct: 18 AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 74 Query: 75 LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G V H LSL+ ++ ++L +++ R+ K + F E K Sbjct: 75 TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 130 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192 IDG + + Y G+ V A RGDG GEDV+A +R I IPR L+ + +EVRGEV+ Sbjct: 131 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 190 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 DF LN +I G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Sbjct: 191 FPVADFTDLNAALIEAGKNPFANPRNAAAGPLRQKDSRVTASRPLSMIVHGIGVLEGHDF 250 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q K+ G PV+ + + + R + IDG+V KVD+ SL Sbjct: 251 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 310 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + A Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 370 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN +K + + +GD V++++AG+VIP+++ +V R+ + F P Sbjct: 371 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 420 DHCPSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474 Query: 492 DFFFKSED----------------------PAFSIRIPADIFT----LQRRQQTSTTKIE 525 E+ A + D +RR+ Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGPW 534 Query: 526 NILGFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 + + ++D + K ++ L R + +L IRHVG AR+LA + Sbjct: 535 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + S + + L V VG+IIA+++ +++ + + Sbjct: 595 FGSVEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 644 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG+N Sbjct: 645 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GSK KA+ LG I++E F +LL+ Sbjct: 705 AGSKETKARDLGRPILDEAGFRYLLE 730 >gi|290967938|ref|ZP_06559488.1| DNA ligase (NAD(+)) [Megasphaera genomosp. type_1 str. 28L] gi|290782077|gb|EFD94655.1| DNA ligase (NAD(+)) [Megasphaera genomosp. type_1 str. 28L] Length = 668 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 241/713 (33%), Positives = 385/713 (53%), Gaps = 48/713 (6%) Query: 12 LSI--EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 ++ EQ + L+ ++++++ YY P + D EYD L R + + +P Sbjct: 1 MTKREEQEKVRLAEIKKQLAELSYQYYTLDAPTVSDYEYDMLYRELETLEKKYPQWV--- 57 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P +IG +++ + K TH P LSL +++ E++R+F R+ + + + Sbjct: 58 TPDSPTQRIGSKISGTFAKYTHDRPMLSLGDVFSDEEVREFDARVRQEL---PGERVAYV 114 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 +E KIDG + + YEKG+FV RGDGH GED++ +R I T+P +S + +E+RG Sbjct: 115 VELKIDGLAVNLIYEKGRFVRGVTRGDGHVGEDITHNVRTIRTVPLHISDL-SDHVEIRG 173 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248 EVY+ F ALN++ A +P+ANPRNAA+G LR+ +P R L+FF + LG TS+ Sbjct: 174 EVYMPIPAFRALNEQRSADELEPFANPRNAAAGSLRQQDPQVAAERKLSFFAYALGGTSD 233 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + Q +LQ +R L FPVN R +++Y + + R TL Y DG+V KV+ Sbjct: 234 WRPESQEALLQTLRNLHFPVNREYRTFTDIQDVIAYIHTWDTRRDTLSYATDGMVIKVNS 293 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+ Q+ LG + PRW I++KF +QA T++L I + +GRTG+LTP A L+PV + G + Sbjct: 294 FAQQQMLGNTVKIPRWAIAYKFPPEQARTKVLQIRVGVGRTGVLTPTAELQPVRLAGTTV 353 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +ATLHNE+YI+ +DIR+GD VL+++AGE+IP+VV ++ R F Sbjct: 354 KSATLHNEEYIRS-----------KDIRIGDTVLIQKAGEIIPEVVRPVMEARTGREVVF 402 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C +V R+ AA RC AC A E++ HFVSR A NIEGLG Sbjct: 403 VMPTQCPSCGGQVQREAGE------AAVRCVNP-ACPAMVAEQIAHFVSRPAMNIEGLGT 455 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + I AD+F L + +I + GFG+ S NL SI + Sbjct: 456 AIVKQLIDH----GLIHDVADLFLLHKE------EILPLEGFGEKSADNLLQSIAAAKEA 505 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L R +F+LGIR VGA+ R LA+ + S Q A D +L+ V +G I Sbjct: 506 GLGRLLFALGIRFVGAKAGRILAETFGSMQALAAA----------DIATLMAVETIGPRI 555 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A+++ ++ + + + ++ L + + +++ + + +V TG LQ R +A+ Sbjct: 556 AESVAAYFADSQKVRVIQKLAAAGVGMTEKKRQLINTSFDGEIVVLTGKLQHFSRKEAEA 615 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 ++ G +A +++KT +++ G +PGSK +KA+ LG + EE+F L + Sbjct: 616 AISARGGSCTATVTKKTTLVVCGADPGSKYDKAKALGTPTIGEEEFCDRLNRE 668 >gi|300087757|ref|YP_003758279.1| DNA ligase, NAD-dependent [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527490|gb|ADJ25958.1| DNA ligase, NAD-dependent [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 687 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 238/712 (33%), Positives = 381/712 (53%), Gaps = 43/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++A+K + +L ++I++H+ YY +P I D EYD L R + + FP+LA E Sbjct: 1 MDEAKKRIDTLRKQITHHNYLYYVKDEPEISDQEYDILFRELQILENEFPELASDE---S 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +G + + + ++ H P LSL ++ E+L+ + RI + ++ F E K Sbjct: 58 PTKIVGAKPSKTFSRIKHVKPLLSLANAFSHEELKVWYERIIKSLS---PETVEFVCEHK 114 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG + + Y +GK V A RGDG +GEDV+ ++ I ++P ++ N+P+ EVRGEV++ Sbjct: 115 IDGLAVAVAYHEGKLVTGATRGDGETGEDVTNNLKTIYSLPHTVADNVPDKFEVRGEVFL 174 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA- 251 ++FL LN + +ANPRNAA+G +R+L+P R L+ F++GLG Sbjct: 175 PTDNFLRLNQMRLKQRLPLFANPRNAAAGSVRQLDPNVTAQRPLDIFIYGLGWAEPADFA 234 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 ++ LQK+ +GF +N R +T I SYY E R LPY+ DG+V KV+++S Sbjct: 235 DNHWDTLQKLGEIGFKINPNNRLCHTLEDIQSYYQEWLGKRDQLPYEADGIVIKVNDYSQ 294 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+ LG+ AR PRW I+ KF QA TRL DI I +GRTG L P A LEPV +GG I A Sbjct: 295 QESLGQIAREPRWAIAFKFPAPQAITRLKDIGISVGRTGTLNPFAILEPVKLGGVTIQRA 354 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHNE+ I+ +DIR+GD+V+V+RAG+VIP++V I+ + A+ FS Sbjct: 355 TLHNEEDIRR-----------KDIRIGDKVIVQRAGDVIPQIVRPIIEDSSNRAEVFSIT 403 Query: 432 SFCPICQSRVVRDLNPKTGKLVA--AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 S+ + A AC AQ E+L+HFVS+ +I G+G++ Sbjct: 404 EKLKGPDSKPHCPVCNAVVTRTAGEVMYYCPNTACPAQLAEKLEHFVSKSGMDIRGMGEK 463 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 F I+ AD++ L+ G + S L SI+ +N Sbjct: 464 LSTAFLNE----GLIKDVADLYNLKTEHLVGR------EGMKEKSAEKLITSISNSKNRP 513 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L I++LGIRH+GAE A+SLA+ + S A+ LI +P +G IA Sbjct: 514 LHNVIYALGIRHIGAENAQSLAREFGSLSELAKA----------SLERLISIPGIGVKIA 563 Query: 610 QAIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +++ ++ P N V L + + + + SS I K++V TG+L+ + RH A Sbjct: 564 DSMLNYFSEPHNQKIVSRLNEILETPTMLPANNAQFSSLISGKEVVITGSLKSMTRHDAW 623 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 E + + G + A ++ KT ++ G+ G+K++KA++ + I++E+ L +++ Sbjct: 624 EMIRRAGGIPKADITTKTSYLVAGEKGGTKIKKAKEGKIPIISEDDLLAMVE 675 >gi|270307958|ref|YP_003330016.1| DNA ligase, NAD-dependent [Dehalococcoides sp. VS] gi|270153850|gb|ACZ61688.1| DNA ligase, NAD-dependent [Dehalococcoides sp. VS] Length = 680 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 238/721 (33%), Positives = 365/721 (50%), Gaps = 57/721 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + + E+ +L +EI+ H+ YY P I DSEYDAL RR + A P+L PN Sbjct: 3 DMFSPQTEIENLRREINRHNQLYYVQDNPEISDSEYDALLRRLKELEEAHPELV---TPN 59 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++G E + V H P LSL ++ +L + R+ + + + EP Sbjct: 60 SPTQRVGAEPLKAFGIVNHPYPLLSLANAFSDTELEAWYLRVKKLLG---NAAFQIDCEP 116 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG + + Y GKF A RGDG GE+++ +R I +IP + P + E+RGEVY Sbjct: 117 KMDGLAVALTYRNGKFTTGATRGDGFQGENITRNLRTIHSIPLNTEEDAPPVFEIRGEVY 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE-IF 250 + K F LN E G +ANPRNAA+G LR+L+P R L+ F++ LG + + Sbjct: 177 LPKEGFAKLNCERADKGLSLFANPRNAAAGSLRQLDPLVTAERPLDIFIYALGYAEDSLL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +++L+ LGF +N R NT YY EM R +LPY+ DG+V+KVD S Sbjct: 237 PDSHWQILEYFSRLGFRINPRNRLVNTLAEAKEYYREMTENRDSLPYEADGVVFKVDSVS 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQK+LG+ R PRW I++KF +Q +T L I I +GRTG L P A LEPVN+GG ++ Sbjct: 297 LQKKLGDAGREPRWAIAYKFPAEQVTTLLRKIGISVGRTGTLNPYAILEPVNVGGVVVKQ 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I +DIR GD V+++RAGEVIP+VV ++ +R P+++PFS Sbjct: 357 ASLHNEDDI-----------LRKDIREGDTVVIQRAGEVIPEVVAPVLAKRSPESKPFSM 405 Query: 431 PSF----------CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 CP+C + R A ++C AQ +L+HFVSR A Sbjct: 406 EETLFNPKLSRPACPVCGGEIYRPAGE-------AMHYCANVSCPAQFERQLEHFVSRGA 458 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +I G+G+ + ++ +D++ L + G+ S N+ Sbjct: 459 MDIRGIGESLSVILAQE----GLVKNVSDLYYLTAADL------LKLPRMGEKSADNIIK 508 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 +I+ ++ L+R IF LGIRHVG E A L+ Y A L Sbjct: 509 AISDSKSRPLDRVIFGLGIRHVGNETAALLSSRYGDIWALAGA----------GLDKLQT 558 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQ 659 +P +G IA +I ++ +NI + L + + S + + V TG L+ Sbjct: 559 IPDIGAKIASSIKAYFSEEKNIAVIRRLETAGVKLASDQKPSHKSLPLSGVEFVVTGKLE 618 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R + Q+ + LG +++ T ++VG + GSKL KA+ +GVK ++E++ + +L+ Sbjct: 619 SLSREETQQKIRSLGGTAKDNVTKATRYLVVGADAGSKLAKARSMGVKELSEQELINMLE 678 Query: 720 Q 720 Q Sbjct: 679 Q 679 >gi|319946751|ref|ZP_08020985.1| NAD-dependent DNA ligase LigA [Streptococcus australis ATCC 700641] gi|319746799|gb|EFV99058.1| NAD-dependent DNA ligase LigA [Streptococcus australis ATCC 700641] Length = 652 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 210/701 (29%), Positives = 356/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + L ++++ + YY P + D EYD L R A+ A P+L + PN P ++ Sbjct: 2 ETRMKELVTLLNHYAEEYYTKDAPSVSDYEYDKLYRELVALEEAHPELVQ---PNSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H+ P SL+ ++ E+L F R+ + + ++ + E KIDG Sbjct: 59 VGGTILKGFEKYQHTYPLYSLQDAFSYEELVAFDQRVRK-----EFPAVTYVCELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y +G A RGDG GE+++ ++ + IP VL + + VRGE Y+ + Sbjct: 114 SISLSYVEGVLETGATRGDGSIGENITENLKRVRDIPLVLPEPL--TLTVRGECYMPRAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N G +ANPRNAA+G LR+L+ + + S Q ++ Sbjct: 172 FDAVNLSRQENGEAEFANPRNAAAGTLRQLDTKIVAE-RKLATFLYQEASPTDQTSQEKV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L K+ LGF VN + + + +Y E+ ++R LPYDIDG+V KV++ ++Q++LG Sbjct: 231 LAKLERLGFVVNPHHKTVTSIEQVWAYIQEVAAMRDQLPYDIDGVVIKVNDLAIQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPKWAVAYKFPAEEKEAKLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR D V+V +AG++IP V+ +++++R + + PS CP C Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVMDKRVSEERL-EIPSHCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 QS ++ + A RC C AQ E L HF SRDA NI GLG ++ F Sbjct: 399 QSELLHFEDE------VALRCINPR-CPAQIKEGLAHFASRDAMNITGLGPAVVEKLFSK 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 E ++ A I+ L + GF + S L D+I + S E+ +F L Sbjct: 452 E----LVQDVAGIYRLTVDDL------LQLDGFKEKSAQKLIDAIQASKGNSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ ++ L + + S A+ + + + +G ++A+++ ++ Sbjct: 502 GIRHVGSKASQLLLQEFHSIPALAEA----------EVERIAAIDSLGMVVAESLKRYFA 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + +E L + + + K +V TG L+++ R +A+ + LGA Sbjct: 552 QEGSQLLLEELKDAGVNLDYLGQKVAADAPLSGKTVVLTGKLERLTRSEAKAKLEALGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+ TD+++ G + GSKL KAQ+L ++I +E L Sbjct: 612 VTGSVSKNTDLLVAGSDAGSKLSKAQELSIEIQDEAWLESL 652 >gi|302023934|ref|ZP_07249145.1| NAD-dependent DNA ligase LigA [Streptococcus suis 05HAS68] gi|330832985|ref|YP_004401810.1| NAD-dependent DNA ligase LigA [Streptococcus suis ST3] gi|329307208|gb|AEB81624.1| NAD-dependent DNA ligase LigA [Streptococcus suis ST3] Length = 652 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 212/701 (30%), Positives = 360/701 (51%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +S L ++ + YYQ +P + D+EYD L R + A P+L P+ P ++ Sbjct: 2 KTRISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELETAHPELIL---PDSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG+M K +H P SL+ ++ E+L F R+ + + + E KIDG Sbjct: 59 VGGKMLDGFEKYSHVYPLFSLQDAFSREELEAFDQRVRK-----EFPQATYICELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G V A RGDG GE+++ ++ + +P L + I VRGE Y+ K Sbjct: 114 SISLTYEAGNLVVGATRGDGSVGENITENLKRVADVPLTLPEAV--DITVRGECYMPKAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N + G +ANPRNAA+G LR+L+ + + S A Q ++ Sbjct: 172 FDRVNKQRQEAGEAEFANPRNAAAGTLRQLDTGVV-AQRGLATFLYQEASPSEATSQSQV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+K+ LGF N+ A + + ++ R LPY+IDG+V KV++ ++Q++LG Sbjct: 231 LEKLDALGFVTNHEYCLAESIDDTWDFIEKIAERRDDLPYEIDGVVIKVNDLAIQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW +++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAVAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+ ++ R PS CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLKVVDKYRKEQEI-MPIPSHCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 QS + + A RC + C +Q + +L+HF SRDA NI GLG ++ F Sbjct: 399 QSDLQHYEDE------VALRCINPI-CPSQLMSKLEHFASRDAMNIAGLGSSIVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + ADI+ L + + GF + S LY +I ++ S E +F L Sbjct: 450 --GAGLVHDVADIYKLTVDDLLT------LEGFKEKSADKLYQAIQTSKSNSAECLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ ++ L + + + A D ++ + +G +IA+++ F+ Sbjct: 502 GIRHVGSKASKILVEKFGDLETLAFA----------DQEAIASLEGLGQVIAKSLTTFFA 551 Query: 618 NPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + L + V+ + + ++ + +V TG L++++R++A+ + LGA Sbjct: 552 SEGAQQLLAELKEAKVNLTYLGQVVDENAALSGMTVVLTGKLERMKRNEAKAKLEALGAN 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KT++++ G + GSKL KAQ+LG++I +E L Sbjct: 612 VAGSVSKKTNLVVAGTDAGSKLTKAQELGIEIKDEAWLESL 652 >gi|226226196|ref|YP_002760302.1| NAD(+)-dependent DNA ligase [Gemmatimonas aurantiaca T-27] gi|254781336|sp|C1A6H2|DNLJ_GEMAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|226089387|dbj|BAH37832.1| NAD(+)-dependent DNA ligase [Gemmatimonas aurantiaca T-27] Length = 689 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 225/705 (31%), Positives = 345/705 (48%), Gaps = 47/705 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L +++ YY +P + D EYD L R I +P L + P ++ Sbjct: 14 ERARELREQLGTAQHEYYVLDRPTLSDQEYDRLFRELQGIEAEYPTLC---TEDSPTRRV 70 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + + H + LSL+ +++ +L F + R S +T+E KIDG Sbjct: 71 GAPVQSAFSPHRHLVRMLSLDNAFDLSELEDFEQSLKRVVGDAIHTSG-YTVELKIDGAA 129 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKND 197 + + Y +G V AA RGDG GEDV+A +R I +P L N P ++EVRGEVY+ Sbjct: 130 VALTYREGVLVTAATRGDGTDGEDVTANVRTIRGVPLRLHGDNHPPLMEVRGEVYLPFAG 189 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLN--PTDITRYLNFFVHGLGKTSEIFAKGQY 255 F +N+ +A G Y NPRNAA+G +R+L+ T F + A+ Q+ Sbjct: 190 FERMNEARVAAGEPVYVNPRNAAAGSMRQLDSANTAARPLRFFGYAAVLPDGSAPARSQW 249 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVYKVDEFSLQKQ 314 E+L+++ G PV ++ +T ++ ++ + IDG V KV++ +LQ + Sbjct: 250 ELLEQLSAWGVPVAPHRQRCHTIQEAEAWATVVEHETRATLGFAIDGGVVKVNDMALQDE 309 Query: 315 LG-ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG R+PRW ++ KFA A T+L ID+ +GRTG+LTP A LEPV++GGA +T A+L Sbjct: 310 LGIRADRTPRWGVARKFAPDMALTKLRRIDVNVGRTGVLTPFAVLEPVDVGGATVTFASL 369 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I +D+R GD V V RAG+VIP V+ + +R QP+S P+ Sbjct: 370 HNADQI-----------AAKDLREGDTVQVVRAGDVIPYVLGPVPEQRDGSQQPWSMPTQ 418 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C + V R + +AC +QLE L HF S+DA +I+GL ++ Sbjct: 419 CPRCNTPVERYGDD-------VAVYCPNVACPGRQLEGLVHFSSKDALDIDGLSYARIQQ 471 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 A + AD+F + Q TS + F S NL +I + L R Sbjct: 472 LLD----AGLVHDVADLFDITVDQLTS------LERFAKKSAENLVAAIAAAKQQPLSRL 521 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIRHVGA+ A+ L++ Y S L V +G IIAQ++ Sbjct: 522 MFGLGIRHVGAQAAQLLSRQYGSLDALMNAT----------AEQLGAVRGIGSIIAQSVA 571 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 ++ +P +E L + + +V TGTL + R +A V Q Sbjct: 572 SYFADPTTRALMERLRARGLRFDEPNAVQADGVLTGATVVLTGTLPSLSRGEATALVEQA 631 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G V++ +S+KT ++ G+ GSKL+KA++LGV ++ E + L L Sbjct: 632 GGRVTSSVSKKTTFVVAGEEAGSKLDKAKELGVTVLTEAELLEKL 676 >gi|298245037|ref|ZP_06968843.1| DNA ligase, NAD-dependent [Ktedonobacter racemifer DSM 44963] gi|297552518|gb|EFH86383.1| DNA ligase, NAD-dependent [Ktedonobacter racemifer DSM 44963] Length = 700 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 214/701 (30%), Positives = 355/701 (50%), Gaps = 50/701 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 E+ K ++ L +I + Y+ P + D+EYD L I P+L P Sbjct: 29 EERLAKRVAELRHQIEEANYQYHVLDNPTLSDAEYDQLMIELQRIEGEHPELV---TPES 85 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + + +H +P LSL + ++L + R + + + E K Sbjct: 86 PTQRVGAGPLQDVAQYSHPVPMLSLANARSEKELYDWYKRAQNIL---PNATFTYVCELK 142 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRGEV 191 IDG + + Y++G+ A RG+G GED + +R I +IP+ L IPE +EVRGE+ Sbjct: 143 IDGLAMALTYDQGRLTMGASRGNGLVGEDWTPNVRTIRSIPQKLHDAAPIPEKVEVRGEI 202 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+S F LN++ K +ANPRNAA+G LR+ +P TR L+FF + +G + Sbjct: 203 YMSTQSFEKLNEQ--MAENKLFANPRNAAAGSLRQKDPRITGTRNLDFFGYQIGYVQGMR 260 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + +E LQ ++ GFP+N V+ A+T ++++ N+ + R LPY+IDG+V K+++ + Sbjct: 261 IQSHWETLQLIKEWGFPLNPHVQLAHTLEEVMAFCNKWEHERFNLPYEIDGVVIKINDLA 320 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG AR PRW I+ K+ Q +TRLLDI + IGRTG + P A LEP+NI G ++ Sbjct: 321 HQEELGVVARDPRWAIAFKYPPIQVATRLLDIKVNIGRTGSVNPWAELEPINIRGVTVSR 380 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNE+ I+ +D+RVGD VLV+RAGEVIP+VV ++ +R + + Sbjct: 381 ASLHNEEDIQR-----------KDLRVGDWVLVQRAGEVIPQVVKPVMEKRTGSEEVYHL 429 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C + ++R + A L C A+ E HFVS+ A +++ +G++ Sbjct: 430 PENCPRCGTAIIRIPDQ-------AMAYCPNLQCPARNFESFTHFVSKGAMDMDTIGEKT 482 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + + A ++ +D + L R + G + S N+ ++I + L Sbjct: 483 CEQLME----AGYLQSVSDFYHLTRDDL------LELEGIKEKSANNMLNAIEASKQRPL 532 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R +F L IR+VG + A+ LA + + VP +G I Q Sbjct: 533 SRLLFGLNIRYVGEKTAQLLADAFGDMDTLMAASEA----------QINEVPGIGPKIGQ 582 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ +++Q N +E L K+V + + + TG L + R A+E + Sbjct: 583 SVAQWFQQEENQALIERLRAAGLNMREER-KHVEGPLTGQSFLLTGRLNTMTRTAAEEAI 641 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 LG +++ +S+ +I G++ GSKL KAQ+ V + +E Sbjct: 642 KALGGTIASGVSKSLSHLIAGEDAGSKLAKAQKAKVPVHDE 682 >gi|297621454|ref|YP_003709591.1| NAD-dependent DNA ligase LigA [Waddlia chondrophila WSU 86-1044] gi|297376755|gb|ADI38585.1| NAD-dependent DNA ligase LigA [Waddlia chondrophila WSU 86-1044] Length = 665 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 226/705 (32%), Positives = 367/705 (52%), Gaps = 46/705 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ +L +E+ H+ YY P+I D E+D L + + I P+ DPN P + Sbjct: 3 KENYEALCKEVWEHNKRYYIDHAPLINDEEFDLLLKELEEIEKMHPEWI---DPNSPTQR 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + H P LSL ++ E++ +FI R+ + + F+ E K+DG Sbjct: 60 VGEMLTEGFPTALHQTPMLSLANTYSKEEVDEFIKRMEK---LAGHKEMAFSCELKMDGI 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKN 196 + + YE+G FV A RGDG G+D+SA ++ IP++P + IEVRGEVY+ N Sbjct: 117 AVAVTYEQGGFVRAVTRGDGKKGDDISANLKTIPSLPLKLIDGKTLNRIEVRGEVYMPVN 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255 F LN +ANPRNAA G L+ L+P R L +G+ + QY Sbjct: 177 AFETLNKTRKESNEALFANPRNAAGGSLKLLDPKATAQRSLAVVFYGISDPESLGLHSQY 236 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 ++ + LG P RQ + I ++ E++ R TL Y IDG+V K+D+ + QK+L Sbjct: 237 DVHGFLGSLGLPTLEYRRQCFSREEIWNFVEEVRKKRETLSYQIDGIVIKLDDLAQQKRL 296 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G + PRW +++KFA +Q TR+ DI +Q+GRTG++TPVA LEPV + G+ I+ ATLHN Sbjct: 297 GSTGKQPRWAVAYKFAAEQTETRIRDIIVQVGRTGVITPVAELEPVLLAGSTISRATLHN 356 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 E+ ++ +D+R+GD L+++ G+VIPKV+ I +R + P+ P CP Sbjct: 357 EEEVER-----------KDVRIGDSALIEKGGDVIPKVISINPEKRREGSMPWKMPDVCP 405 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C +VR A RC C Q L R+ +FVS++A I+ LG++ + Sbjct: 406 SCGHPLVRVEGE------VAVRCPNREGCPEQLLRRIAYFVSKEAMEIDHLGEKVVKQLI 459 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + ++ P+DI+TL + Q N+ GF + + L I +++S RFI Sbjct: 460 R----IGYVKRPSDIYTLTKEQL------LNLEGFKEKAAERLKQGIENSKHVSFSRFIM 509 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGI++VGA A LA Q + L+++ +G+ A++++E+ Sbjct: 510 ALGIKYVGAGTAELLANRSGDIDGLKQL----------SYEELLKINGIGEKAAESVIEY 559 Query: 616 YQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + + N+ +E L K P + + NK V TGTL+ R A + + G Sbjct: 560 FSDAENLKEIERLKKFGVCPQKVERKTFIGHPFNNKTFVLTGTLENYTRTAAASLIKERG 619 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V+ +S+KTD ++ G++PGSKLEKA+ LG++++ E +F+ ++ Sbjct: 620 GKVTGSVSKKTDYLLAGESPGSKLEKAESLGIQVLTESEFVKMIN 664 >gi|223044011|ref|ZP_03614051.1| DNA ligase, NAD-dependent [Staphylococcus capitis SK14] gi|222442554|gb|EEE48659.1| DNA ligase, NAD-dependent [Staphylococcus capitis SK14] Length = 667 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 239/714 (33%), Positives = 377/714 (52%), Gaps = 53/714 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + ++ L ++ + YY P + DSEYD L I P+ + + Sbjct: 1 MKDLQSRVNELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIDIEEKHPEYKTA---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N EDLRKF RI ++ + E K Sbjct: 58 PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRENIG-----NVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++Y+ G+FV RGDG +GED++ +R I IP + + EVRGE Y+ Sbjct: 113 IDGLAVSLKYQNGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLN--FEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + F+ LN E G +P+ANPRNAA+G LR+L+ R L+ F++ + +E A Sbjct: 171 PRQSFMNLNAEKEENGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFDAT 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q LQ++ LGF N + G++ Y + R +L YDIDG+V KV++ Q Sbjct: 231 TQSGALQELDDLGFKTNQERERVADIDGVLDYIEKWTEKRESLSYDIDGIVIKVNDLDQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +++G +SPRW I++KF ++ ++LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVVSKLLDIELSIGRTGVVTPTAILEPVRVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V+VK+AG++IP+VV I++ R DA+ + P+ Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVVKKAGDIIPEVVKSILDRRPKDAKTYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 LCPSCDHELVRIEGE------VALRCINPK-CQAQLIEGLIHFVSRQAMNIDGLGTKIIQ 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 +++E I+ ADIF L+ + G+ V NL +I K ++ SLE Sbjct: 453 QLYENE----LIKDVADIFYLKEEDL------LPLERMGNKKVENLLAAIEKAKDNSLEH 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + L+ + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETMDRLLNVTE----------EELVAIHDIGDKLAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668 V + +N ++ L + + K E K +V TG L+++ R +A + Sbjct: 553 VTYLENQDIRALIQKLKDKNVNMNYKGIKTTEIEGHPEFNGKTIVLTGKLEQMTRSEATQ 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 ++ GA V++ +++ TDI+I G + GSKL KA++ G +I E++F ++ N Sbjct: 613 WLEMQGAKVTSSVTKSTDIVIAGADAGSKLAKAEKFGTEIWTEDEFAKKQKELN 666 >gi|288904984|ref|YP_003430206.1| DNA ligase (NAD-dependent) [Streptococcus gallolyticus UCN34] gi|288731710|emb|CBI13271.1| DNA ligase (NAD-dependent) [Streptococcus gallolyticus UCN34] Length = 652 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 223/701 (31%), Positives = 352/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L E++ + YY +P + DSEYD L R + A P+L PN P + Sbjct: 2 KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELIL---PNSPTQE 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + + E KIDG Sbjct: 59 VGGLVLDGFEKYQHETPLYSLQDAFSREELEDFDRRVK-----AEFPNASYMAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y G A RGDG GE+++ ++ I IP L P I VRGE Y+ K Sbjct: 114 SISLVYVDGVLQVGATRGDGSVGENITENVKRIKDIPHK--LAQPLNITVRGEAYLPKTS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N E G+ +ANPRNAA+G LR+LN T + N + + Q ++ Sbjct: 172 FDKINKERRDSGQTEFANPRNAAAGTLRQLN-TVVVAKRNLATFLYQEVASTSMTTQNDV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+++ GF VN ++ I + E+ + R LPYDIDG+V KV+ ++Q++LG Sbjct: 231 LEELSRYGFSVNPRRITTSSMADIWKFIQEVAAERDNLPYDIDGIVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G +++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTMVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+ ++ ++R P P CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVDSKRDK-QVPMPIPESCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S ++ + A RC L C +Q ERL HF SRDA NI GLG + FK Sbjct: 399 GSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKLFKV 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 E + ADI+ L S + GF + S LY++I + S ++ +F L Sbjct: 452 E----LVHDVADIYQLTVEDLLS------LDGFKEKSAEKLYNAIQVSKENSADKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVGA+ +R L + + + D S+ + +G +IA ++ ++ Sbjct: 502 GIRHVGAKASRQLLEVFETIDQLVAA----------DADSIASIDGLGTVIANSLRSYFA 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + L + + +++ +V TG L+++ R++A+E + LGA Sbjct: 552 KKEATELLHELKNAGVNFAYLGKKVSKDAQLAGLTVVLTGKLERLTRNEAKEKLQDLGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTDI++ G + GSKL KAQ LG+ + +E L Sbjct: 612 VTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDEAWLESL 652 >gi|268319976|ref|YP_003293632.1| DNA ligase, NAD-dependent [Lactobacillus johnsonii FI9785] gi|262398351|emb|CAX67365.1| DNA ligase, NAD-dependent [Lactobacillus johnsonii FI9785] Length = 668 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 209/715 (29%), Positives = 363/715 (50%), Gaps = 50/715 (6%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + L+ +A +++ L +++ D YY P++ D+ YD + + FPDL + Sbjct: 1 MAVLTHSEASQKVDELRKKLDKWADDYYAKDAPVVEDAVYDKTYQELVELEQKFPDLVTA 60 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + ++GGE+ L KV H +P LS+ +++ ++L++F RI + + + + Sbjct: 61 ---DSITQRVGGEIKSDLSKVEHPVPMLSMGDVFSKDELKEFDERITKLVG----HPVAY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ Y KGK A+ RG+G GEDV+A + I IP+ L + EVR Sbjct: 114 NVELKIDGLSLSLEYTKGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPEPL--TTEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+ K F LN E G + +ANPRNAA+G LR+L+ + Sbjct: 172 GECYMEKEAFATLNAERDEKGEQVFANPRNAAAGSLRQLDARITKKRNLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ + +M LGF N R+ + + + +E + R+ L Y IDG+V KVD+ Sbjct: 232 RNITSQHQAIDEMNRLGFHTNQSGRRFESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 SLQ +LG + PRW I++KF ++ T + +I+ +GRTG++TP A ++PV + G ++ Sbjct: 292 LSLQNELGNTVKVPRWEIAYKFPPEEQETVVRNIEWTVGRTGVVTPTAVMDPVKLAGTIV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN DY++ + +R+GD V + +AG++IP++ +++++R D++P+ Sbjct: 352 SRASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLSKRPKDSKPY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C +V + A RC + C AQ E + HF SR A NI GLG Sbjct: 401 EIPNVCPSCGETLVHLQDE------VALRCINPM-CPAQIEEGIIHFASRGAMNIMGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + I AD++ L Q + F + S+TNL SI + Sbjct: 454 RIVKQLIDK----GFINDVADLYHLTPDQL------GQLDHFKEKSITNLLSSIENSKQN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S E ++ LGI HVGA+ AR + + Y + + +Q L + +G+ I Sbjct: 504 SAELLLYGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIGETI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A+++ ++ P ++ L E+ + + K +V TG L R + Sbjct: 554 AESLTAYFNQPSAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKLSAFTRSE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + LGA V+ +S+KTD +I G + GSK +KA++L V ++ E++ + +++ Sbjct: 614 FTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKIEK 668 >gi|42519595|ref|NP_965525.1| NAD-dependent DNA ligase [Lactobacillus johnsonii NCC 533] gi|81667534|sp|Q74I49|DNLJ_LACJO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|41583884|gb|AAS09491.1| NAD-dependent DNA ligase [Lactobacillus johnsonii NCC 533] Length = 668 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 209/715 (29%), Positives = 363/715 (50%), Gaps = 50/715 (6%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + L+ +A +++ L +++ D YY P++ D+ YD + + FPDL + Sbjct: 1 MAVLTHNEASQKVDELRKKLDKWADDYYAKDAPVVEDAVYDKTYQELVELEEQFPDLVTA 60 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + ++GGE+ L KV H +P LS+ +++ ++L++F RI + +S+ + Sbjct: 61 ---DSITQRVGGEIKSDLSKVEHPVPMLSMGDVFSKDELKEFDERITKLVG----HSVAY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ Y GK A+ RG+G GEDV+A + I IP+ L + EVR Sbjct: 114 NVELKIDGLSLSLEYTDGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPEPL--TTEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+ K F LN E G + +ANPRNAA+G LR+L+ + Sbjct: 172 GECYMEKEAFATLNAERDEKGEQVFANPRNAAAGSLRQLDARITKKRNLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ + +M LGF N R+ + + + +E + R+ L Y IDG+V KVD+ Sbjct: 232 RNITSQHQAIDEMNRLGFHTNQSGRRFESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 SLQ +LG + PRW I++KF ++ T + +I+ +GRTG++TP A ++PV + G ++ Sbjct: 292 LSLQNELGNTVKVPRWEIAYKFPPEEQETVVRNIEWTVGRTGVVTPTAVMDPVKLAGTIV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN DY++ + +R+GD V + +AG++IP++ +++++R D++P+ Sbjct: 352 SRASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLSKRPKDSKPY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C +V + A RC + C AQ E + HF SR A NI GLG Sbjct: 401 EIPNVCPSCGETLVHLQDE------VALRCINPM-CPAQIEEGIIHFASRGAMNIMGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + I AD++ L Q + F + S+TNL SI + Sbjct: 454 RIVKQLIDK----GFINDVADLYQLTPDQL------GQLDHFKEKSITNLLSSIENSKQN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S E ++ LGI HVGA+ AR + + Y + + +Q L + +G+ I Sbjct: 504 SAELLLYGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIGETI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A+++ ++ P ++ L E+ + + K +V TG L R + Sbjct: 554 AESLTAYFNQPSAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKLSAFTRSE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + LGA V+ +S+KTD +I G + GSK +KA++L V ++ E++ + +++ Sbjct: 614 FTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKIEK 668 >gi|284037426|ref|YP_003387356.1| DNA ligase, NAD-dependent [Spirosoma linguale DSM 74] gi|283816719|gb|ADB38557.1| DNA ligase, NAD-dependent [Spirosoma linguale DSM 74] Length = 696 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 202/734 (27%), Positives = 338/734 (46%), Gaps = 67/734 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E+ ++ L ++ ++ YYQ S + D +D L A+ + +P+ P Sbjct: 1 MNPEE---QIIDLTNRLNQYNFQYYQNSISEVDDFTFDKLLADLTALENQYPEF---RQP 54 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG ++ V H P LSL ++ EDL +F R+ + + + E Sbjct: 55 DSPTARVGGTISKEFKTVYHRFPMLSLGNTYSEEDLIEFDKRVQKGLN---GQTYEYICE 111 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI------- 184 K DG +++ YE G V A RGDG G+D++ IR I T+P + Sbjct: 112 LKFDGVALSLTYENGVLVQGATRGDGVRGDDITNNIRTIRTVPLRIGAGHKATHTQPESA 171 Query: 185 ---------IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY 235 EVRGE ++ +F +N E +G ANPRNAASG ++ + + + Sbjct: 172 PAVAALPALFEVRGEGFLPLAEFDRINKEREDIGEPLLANPRNAASGTFKQQDSGAVAKR 231 Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295 + + E L M GF V+ R+ +++Y NE ++ R L Sbjct: 232 RLDCYLYSFLSDTDIFQTHEESLVAMNAWGFNVSPTWRKCTDIQEVMAYINEWETKRFDL 291 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 P DG+V KV+ + Q+ LG A+SPRW I+ K+ AST L I Q+GRTG +TPV Sbjct: 292 PLGTDGIVIKVNRYDQQRDLGYTAKSPRWAIAFKYKAMAASTELNGIQYQVGRTGAVTPV 351 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 A L PV + G ++ A+LHN + I+ L + + D V V++ GE+IPK+ Sbjct: 352 ALLTPVLLAGTIVKRASLHNANEIERL-----------GVMMHDTVFVEKGGEIIPKITG 400 Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475 + +N R +QP +P+ CP C + +VR A C C Q+ R +HF Sbjct: 401 VDLNRRTDKSQPIVYPTTCPACGTALVRKEGE------AHFYCPNEQGCPPQRQARFEHF 454 Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 + R A NIE LG+ +++ ++ PAD++ L+ K+ + G V Sbjct: 455 IQRRAMNIESLGEGKIELLIDR----GLVQTPADLYDLKATDLLGIEKVFLVEETGKKRV 510 Query: 536 TNLYDS--------INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587 + + I + ++ +F LGIR+VG A L Y+ S Sbjct: 511 VSFREKTVENILTAIERSKSQPFANVLFGLGIRYVGNTTAEKLVDYFGSMDAIMNATQ-- 568 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSS 645 L+ VP G IA+++V ++ + N VE L +G + + Sbjct: 569 --------EQLLAVPDTGPRIAESVVAWFGDTANQEFVERLRAAGLQFVGEKKVVEQEGD 620 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQL 704 + K ++TGT R + + + G + + +S+K + +IVG+N G SK+EKA++L Sbjct: 621 SLTGKTFLYTGTFANFSREELESRIEANGGKLLSGISKKLNYLIVGENAGPSKVEKAKKL 680 Query: 705 GVKIMNEEQFLFLL 718 V ++ E++F+ +L Sbjct: 681 NVPMIGEDEFMAML 694 >gi|294815250|ref|ZP_06773893.1| DNA ligase [Streptomyces clavuligerus ATCC 27064] gi|326443605|ref|ZP_08218339.1| NAD-dependent DNA ligase LigA [Streptomyces clavuligerus ATCC 27064] gi|294327849|gb|EFG09492.1| DNA ligase [Streptomyces clavuligerus ATCC 27064] Length = 767 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 228/742 (30%), Positives = 354/742 (47%), Gaps = 61/742 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +AR+ + L ++I H YY +P+I DSE+D L R + + P L P+ Sbjct: 47 PARARERHAELAEQIEEHRFRYYVKDQPVISDSEFDRLLRSLEELEERHPALC---TPDS 103 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+ G+ L KV H LSL+ ++ E+L + R+ R D + F E K Sbjct: 104 PTQKVAGQYETDLAKVEHRERMLSLDNAFDEEELTAWAERVEREVGSPDFH---FLCELK 160 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG + + YEKG+ AA RGDG GED++ IR I +P L + PE++E+RGEVY Sbjct: 161 VDGLAVNLTYEKGRLTRAATRGDGRIGEDITPNIRTIADVPDRLRGDRIPELVEIRGEVY 220 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + F LN+ IA G +PYANPRN+ASG LR+ +P T L+ VHG+G Sbjct: 221 FPMDQFQQLNERRIAAGEQPYANPRNSASGSLRQKDPKVTATLPLHMVVHGIGAREGFDI 280 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +R G P R ++ G+ + R ++ ++IDG+V K+DE L Sbjct: 281 DCLSHAYDLLREWGLPTARHNRVVDSLEGVREFIAHYGENRHSMEHEIDGVVVKLDEIPL 340 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG AR+PRW I+ K+ ++ +TRL+DI + +GRTG +TP A++EPV + G+ + A Sbjct: 341 QGRLGSTARAPRWAIAWKYPPEEVNTRLVDILVGVGRTGRVTPYAQVEPVQVAGSEVEFA 400 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+D +K + + +GD V++++AG+VIP+++ +V R + F P Sbjct: 401 TLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVELRDGTEREFVMP 449 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C + + + RC +C AQ ERL + R + +IE G Sbjct: 450 AECPECGTELRPM-----KEGDVDLRCPNARSCPAQLRERLFYLAGRRSLDIEHFGYVAA 504 Query: 492 DFFFKSEDPA-FSIRIPADIFTLQRRQQTSTTKI------------------------EN 526 + +PA ++ D+F+L Q N Sbjct: 505 AALTRPLEPAEPPLKDEGDLFSLTVEQLLPIRAYVLDPDSKLPKRDPKTGEEKIATVFAN 564 Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 G + + +I + L R + L IRHVG A +LA+ + S Q + Sbjct: 565 QEGEPRKNALAMLRNIEAAKTRPLARVLTGLSIRHVGPVAAEALAREFRSVQRIQEATE- 623 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVS 644 L VG IIA ++ +++ + + E+ Sbjct: 624 ---------EELAATEGVGAIIAASLKQWFAEEWHQEILRKWEAAGVRMAEEGADEEQGP 674 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 +E +V TGTLQ R A+E + LGA V+ +S+KT ++VGDNPGSK +KA QL Sbjct: 675 RPLEGVTVVVTGTLQDYTRDGAKEALQSLGAKVTGSVSKKTAFVVVGDNPGSKFDKAMQL 734 Query: 705 GVKIMNEEQFLFLLQQYNTTLR 726 V ++ E+ F LL+Q R Sbjct: 735 KVPVLREDGFTLLLEQGPDAAR 756 >gi|306831054|ref|ZP_07464215.1| NAD-dependent DNA ligase LigA [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426620|gb|EFM29731.1| NAD-dependent DNA ligase LigA [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 652 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 223/701 (31%), Positives = 354/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L E++ + YY +P + DSEYD L R + A P+L PN P + Sbjct: 2 KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELIL---PNSPTQE 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L +F R+ + + + E KIDG Sbjct: 59 VGGLVLDGFEKYQHETPLYSLQDAFSREELEEFDRRVK-----AEFPNASYMAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y G A RGDG GE+++ ++ I IP L P I VRGE Y+ K Sbjct: 114 SISLVYVDGVLQVGATRGDGSVGENITENVKRIKDIPHK--LAQPLNITVRGEAYLPKAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N+E G+ +ANPRNAA+G LR+LN T + N + + Q ++ Sbjct: 172 FDKINEERRDSGQTEFANPRNAAAGTLRQLN-TVVVAKRNLATFLYQEVASTSMTTQNDV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+++ GF VN ++ I + E+ + R LPYDIDG+V KV+ ++Q++LG Sbjct: 231 LEELSRYGFSVNPRRITTSSMADIWKFIQEVAAERDNLPYDIDGIVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+ ++ ++R P P CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVDSKRDK-QVPMPIPESCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S ++ + A RC L C +Q ERL HF SRDA NI GLG + FK+ Sbjct: 399 GSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKLFKA 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 E + ADI+ L S + GF + S LY++I + S ++ +F L Sbjct: 452 E----LVHDVADIYQLTVEDLLS------LDGFKEKSAEKLYNAIQVSKENSADKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVGA+ +R L + + + D S+ + +G +IA ++ ++ Sbjct: 502 GIRHVGAKASRQLLEVFETIDQLVAA----------DADSIASIDGLGTVIANSLRSYFA 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + L + + +++ +V TG L+++ R++A+E + LGA Sbjct: 552 KKEATELLHELKNAGVNFAYLGKKVSKDAQLAGLTVVLTGKLERLTRNEAKEKLQDLGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTDI++ G + GSKL KAQ LG+ + +E L Sbjct: 612 VTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDEAWLESL 652 >gi|254390812|ref|ZP_05006024.1| DNA ligase [Streptomyces clavuligerus ATCC 27064] gi|197704511|gb|EDY50323.1| DNA ligase [Streptomyces clavuligerus ATCC 27064] Length = 730 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 228/742 (30%), Positives = 354/742 (47%), Gaps = 61/742 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +AR+ + L ++I H YY +P+I DSE+D L R + + P L P+ Sbjct: 10 PARARERHAELAEQIEEHRFRYYVKDQPVISDSEFDRLLRSLEELEERHPALC---TPDS 66 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+ G+ L KV H LSL+ ++ E+L + R+ R D + F E K Sbjct: 67 PTQKVAGQYETDLAKVEHRERMLSLDNAFDEEELTAWAERVEREVGSPDFH---FLCELK 123 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG + + YEKG+ AA RGDG GED++ IR I +P L + PE++E+RGEVY Sbjct: 124 VDGLAVNLTYEKGRLTRAATRGDGRIGEDITPNIRTIADVPDRLRGDRIPELVEIRGEVY 183 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + F LN+ IA G +PYANPRN+ASG LR+ +P T L+ VHG+G Sbjct: 184 FPMDQFQQLNERRIAAGEQPYANPRNSASGSLRQKDPKVTATLPLHMVVHGIGAREGFDI 243 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +R G P R ++ G+ + R ++ ++IDG+V K+DE L Sbjct: 244 DCLSHAYDLLREWGLPTARHNRVVDSLEGVREFIAHYGENRHSMEHEIDGVVVKLDEIPL 303 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG AR+PRW I+ K+ ++ +TRL+DI + +GRTG +TP A++EPV + G+ + A Sbjct: 304 QGRLGSTARAPRWAIAWKYPPEEVNTRLVDILVGVGRTGRVTPYAQVEPVQVAGSEVEFA 363 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+D +K + + +GD V++++AG+VIP+++ +V R + F P Sbjct: 364 TLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVELRDGTEREFVMP 412 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C + + + RC +C AQ ERL + R + +IE G Sbjct: 413 AECPECGTELRPM-----KEGDVDLRCPNARSCPAQLRERLFYLAGRRSLDIEHFGYVAA 467 Query: 492 DFFFKSEDPA-FSIRIPADIFTLQRRQQTSTTKI------------------------EN 526 + +PA ++ D+F+L Q N Sbjct: 468 AALTRPLEPAEPPLKDEGDLFSLTVEQLLPIRAYVLDPDSKLPKRDPKTGEEKIATVFAN 527 Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 G + + +I + L R + L IRHVG A +LA+ + S Q + Sbjct: 528 QEGEPRKNALAMLRNIEAAKTRPLARVLTGLSIRHVGPVAAEALAREFRSVQRIQEATE- 586 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVS 644 L VG IIA ++ +++ + + E+ Sbjct: 587 ---------EELAATEGVGAIIAASLKQWFAEEWHQEILRKWEAAGVRMAEEGADEEQGP 637 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 +E +V TGTLQ R A+E + LGA V+ +S+KT ++VGDNPGSK +KA QL Sbjct: 638 RPLEGVTVVVTGTLQDYTRDGAKEALQSLGAKVTGSVSKKTAFVVVGDNPGSKFDKAMQL 697 Query: 705 GVKIMNEEQFLFLLQQYNTTLR 726 V ++ E+ F LL+Q R Sbjct: 698 KVPVLREDGFTLLLEQGPDAAR 719 >gi|296876694|ref|ZP_06900742.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC 15912] gi|296432196|gb|EFH17995.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC 15912] Length = 652 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 213/701 (30%), Positives = 353/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L + ++ + YY P + DSEYD L R + A PD P P ++ Sbjct: 2 KTRMKELVELLNRYAYEYYTKDTPSVSDSEYDQLYRELVELETAHPDEIL---PESPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + +SI + E KIDG Sbjct: 59 VGGVVLKGFTKYQHQYPLYSLQDAFSREELEAFDQRVRK-----EFSSISYVCELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G V A RGDG GED++ ++ + IP VL + I VRGE Y+ + Sbjct: 114 SISLTYENGVLVTGATRGDGSVGEDITENLKRVKDIPLVLPEPVN--ITVRGECYMPRAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N G +ANPRNAA+G LR+L+ + N + S Q + Sbjct: 172 FDRVNQIRQENGEPEFANPRNAAAGTLRQLDTKIV-AKRNLATFLYQEVSPTDQSSQEGV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+K+ LGF VN A I + ++ +R LPYDIDG+V KV++ ++Q++LG Sbjct: 231 LEKLARLGFVVNQERVLAEDMEQIWEFIQKVAQLREDLPYDIDGIVIKVNDLAVQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++P+W +++KF ++ ++L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPKWAVAYKFPAEEKEAKILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DI D V+V +AG++IP V+ ++ ++R D + P+ CP C Sbjct: 351 YI-----------AEKDIHQDDTVIVYKAGDIIPAVLRVVKDKRVSDQAL-AIPTQCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 QS ++ + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 399 QSELLHFEDE------VALRCINPL-CPAQMKEGLNHFASRDAMNITGLGPAVVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + A I+ L + + GF + S LY++I + S E+ +F L Sbjct: 450 --AAQLVEDVAGIYRLTVEDLLT------LEGFKEKSAEKLYEAIQASKENSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG+++++ L + + A D + + +G ++A+++ ++ Sbjct: 502 GIRHVGSKVSQILLQEFHDIDQLATA----------DPERIASIDSLGMVVAESLKSYFA 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + ++ L + + + + + +V TG L+++ R +A+ + LGA Sbjct: 552 QEGSKRLLQELKEASVNMVYLGEKVAADAALSGMTVVLTGKLERLTRSEAKAKLESLGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTD+++ G + GSKL KAQ+LG+++ +E L Sbjct: 612 VTGSVSKKTDLVVAGSDAGSKLTKAQELGIQVEDEAWLESL 652 >gi|171059186|ref|YP_001791535.1| DNA ligase, NAD-dependent [Leptothrix cholodnii SP-6] gi|254781357|sp|B1Y6D4|DNLJ_LEPCP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|170776631|gb|ACB34770.1| DNA ligase, NAD-dependent [Leptothrix cholodnii SP-6] Length = 768 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 257/758 (33%), Positives = 375/758 (49%), Gaps = 91/758 (12%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 ++ A + L + +H YY P + D+EYD L + AI +P L + Sbjct: 30 DLQTAAARAAWLRSTLQHHAHLYYVLDAPELPDAEYDRLFQELQAIEAMYPAL---RTAD 86 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKDD-NSIFFT 129 P ++ G++ V H++P LS+ + E F R+ R + DD I + Sbjct: 87 SPTQRVLGQVRDGFVVVRHAVPMLSIRTETDTEASGAVAFDARVRRELELPDDAPPISYA 146 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-------- 181 E K DG I +RYE G V AA RGDG SGEDV+ IR I IP L Sbjct: 147 TELKFDGLAINLRYEHGVLVQAATRGDGESGEDVTQNIRTIGQIPLRLRWAPTLGADAHS 206 Query: 182 -----------------------PEIIEVRGEVYISKNDFLALNDEMIAV------GRKP 212 P ++EVRGEVY+ ++DF ALN+ G K Sbjct: 207 LPPEGARFALGRPGGETGAPDLAPAVLEVRGEVYMRRDDFEALNERQRERIARGDKGEKT 266 Query: 213 YANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNN 270 + NPRNAA+G +R+L+P R L+FF +GLG+ +L + G PV Sbjct: 267 FVNPRNAAAGAVRQLDPAIAAQRPLSFFAYGLGEVQGWALPHTHAGLLDALAAAGLPVCA 326 Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 G+V+++ + ++R +L +DIDG+VYKVD +LQ++LG R PRW ++HK+ Sbjct: 327 ERAVVQGADGLVAFHQRIGALRDSLAFDIDGVVYKVDSLALQQRLGFVTREPRWAVAHKY 386 Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390 ++ TRLL I+IQ+GRTG LTPVARLEPV +GG ++NATLHNED + Sbjct: 387 PAQEQMTRLLGIEIQVGRTGKLTPVARLEPVFVGGTTVSNATLHNEDEARR--------- 437 Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSF----CPICQSRVVRDL 445 +D+RVGD V+V+RAG+VIP+VV +++ +R D +PF CP+C S + R Sbjct: 438 --KDVRVGDTVIVRRAGDVIPQVVGVVLEQRPDDVGEPFDLYQRLGGRCPVCGSAIARPE 495 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 A RCTGGL C+AQ+ + + HF SR +IEGLG + +D A IR Sbjct: 496 GE------ADWRCTGGLFCAAQRKQAILHFASRRMMDIEGLGDKLVDQLVD----AGVIR 545 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 +++ L K+ + G+ S NL ++ K + +L RF+FSLGIR VG Sbjct: 546 TLPELYKL------GVAKLTALERMGEKSAVNLVAALEKSKQTTLARFLFSLGIRQVGEA 599 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 A++LA+++ + L VP VG I+A +I F+ P N V Sbjct: 600 TAKALARHFGALDRVMDA----------SVDQLQAVPDVGPIVALSIRTFFDQPHNREVV 649 Query: 626 EALLKEV----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 E L + K LV TGTL + R A++ + G VS + Sbjct: 650 EQLRAAGIHWAEHEASAAADAAELPLAGKTLVLTGTLPTLGRDAAKDLIEAAGGKVSGSV 709 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 S+KT ++ G GSKL+KA++LG+ I++E L LL Sbjct: 710 SKKTHFVVAGAEAGSKLDKARELGLVILDEAGLLALLN 747 >gi|195953269|ref|YP_002121559.1| DNA ligase, NAD-dependent [Hydrogenobaculum sp. Y04AAS1] gi|254781349|sp|B4U8X0|DNLJ_HYDS0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|195932881|gb|ACG57581.1| DNA ligase, NAD-dependent [Hydrogenobaculum sp. Y04AAS1] Length = 700 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 244/719 (33%), Positives = 392/719 (54%), Gaps = 52/719 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 LS E+A K +++L + I+YHD YY ++P+I D+EYDA+ + +I +PDL Sbjct: 27 KLSKEEAIKIINTLRELINYHDYRYYVLNQPVISDAEYDAIYKFLKSIEDNYPDLI---T 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P+ ++ +++ + +V H P LSL+ +N +DLR F R+ K+ I + + Sbjct: 84 PDSLTQRVSSDISSTFPQVKHLAPMLSLDNTYNEDDLRDFDRRVKELSGKEH---IEYCV 140 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVR 188 EPK DG I++ YE FV A RGDG GEDV+ ++ I TIP + + I +E+R Sbjct: 141 EPKYDGAGISLLYENDLFVRGATRGDGEVGEDVTKNLKTIKTIPLRANFSKQGIRLLEIR 200 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGK 245 GEV I+K+DF +N+E +A PYANPRN A+G +R +P ++ + + + Sbjct: 201 GEVIINKDDFKKINEERMAENLPPYANPRNLAAGSIRLQDPQEVVKRPLTALVYQITYVE 260 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + K Y ++ + LGF ++ ++ Y +S R +LPY+IDG+V Sbjct: 261 PTNNMPKTHYGAIKMLHDLGFKTPFLDMKLCKNIQEVIDYCRYFESKRESLPYEIDGMVI 320 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++ SL +LG + +PRW + KF KQA+T +LD+ +GR G +TPVA+LEPV++G Sbjct: 321 KVNDISLYDELGFTSHAPRWATAFKFKAKQATTIILDVIFSVGRVGNITPVAKLEPVSLG 380 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G I++ +L NED+I+ +DI + D V+++RAGEVIP VV ++ R D Sbjct: 381 GVTISSVSLFNEDFIR-----------EKDIHIKDTVIIERAGEVIPYVVSVVKEARPKD 429 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+P FP +CP C S++V+ A RC ++C AQ + R++HF S+DA +I+ Sbjct: 430 AKPIVFPKYCPSCGSKLVKAPGE------VAWRCIN-ISCPAQVVLRIRHFASKDAMDIK 482 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG+ + ++ ++ ADI+ L + + + F S NL D+I Sbjct: 483 GLGEAVAQLLYDAK----LVKNIADIYYL------KFSDLVRLPRFAKKSAQNLIDAIEA 532 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + L R ++ LGIR+VG A+ LA YY N + L + + Sbjct: 533 SKRRGLARVLYGLGIRYVGLTTAKKLASYYKDIWNIVKASE----------EDLRNIEDI 582 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 GDI+A++I EF+ +NI ++ L + + + VS+++ + VFTGTL R Sbjct: 583 GDIVARSIKEFFGLEQNINTIKRLEEAGVL-LKEVSEAVSNKLAGLQFVFTGTLSCCTRE 641 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A++ V LGA S ++ T ++VG +PG +KL KA LG+K ++EE+FL LL+ Sbjct: 642 VARQMVESLGATTSDSVTHHTSYLVVGQDPGATKLRKANMLGIKTISEEEFLRLLEDSK 700 >gi|317153517|ref|YP_004121565.1| DNA ligase, NAD-dependent [Desulfovibrio aespoeensis Aspo-2] gi|316943768|gb|ADU62819.1| DNA ligase, NAD-dependent [Desulfovibrio aespoeensis Aspo-2] Length = 678 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 233/724 (32%), Positives = 379/724 (52%), Gaps = 59/724 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + + L + I +H+ YY P I D+EYDAL R A+ A P+L +D Sbjct: 1 MASSEIIDRAAWLRERIEHHNHRYYVLDDPEISDAEYDALFRELAALEAAHPEL---DDA 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++GGE + H++ SL+ +++ F R+ + + + + + + Sbjct: 58 NSPTRRVGGEPAVGFTPYEHALRMYSLDNAMALDEWFAFAERVSKGLGR---SEVAYWTD 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190 PK+DG + + YE G+ V AA RGDGH GEDV+ +R + +P VL P+++EVRGE Sbjct: 115 PKMDGLAVEVIYEAGRLVRAATRGDGHIGEDVTHSMRTVMNLPLVLRGPDVPDLLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSE- 248 V +S DF A+N G K +ANPRN A+G +R+L+P F +G+G+ Sbjct: 175 VVMSNADFAAMNQRRREAGEKVFANPRNGAAGAVRQLDPKVAASRPLRFLAYGVGRVQWG 234 Query: 249 ---IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 Q+E++ + LGF V + + + Y+ + +R+ LPY+IDG+V K Sbjct: 235 SPLFAWTSQHEIMAGLARLGFAVPPEAKLCGSASEVADYFTRLMELRAGLPYEIDGVVAK 294 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD +Q+ LG +R+PRW ++ KF QA T L DI IQ+GRTG+LTPVA LEPV + G Sbjct: 295 VDNLEMQRALGFTSRAPRWALALKFPAHQARTMLRDIRIQVGRTGVLTPVAELEPVPLAG 354 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHN+ YI RD R+GD VL++RAG+VIP+V+ + V +R A Sbjct: 355 VIVSNATLHNKGYI-----------AERDFRIGDTVLIQRAGDVIPQVLSVDVGQRPESA 403 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ FP+ CP+C + A RCT C A+ ++R+ HFVS+ ++EG Sbjct: 404 TPYEFPAICPVCGGEAR--------EDGEAVRCTNP-TCPAKTVQRIIHFVSKAGLDMEG 454 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 +G+ + + + PAD+FTL + T + G GD S ++I++ Sbjct: 455 VGRTWVRRLAED----GVLETPADLFTLDK------TALLRYEGMGDKSADKFIEAIDRA 504 Query: 546 RNISL-ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 R + R I LGIRHVG + AR+LA Y AQ D L+ + V Sbjct: 505 RRTAPLWRLIAGLGIRHVGEQTARTLAARYRDLDALAQA----------DRDELLALDDV 554 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKE------VSPSIGRHEKNVSSEIENKKLVFTGTL 658 G ++A+++ F+++ ++ + + + ++ + K +FTG+L Sbjct: 555 GPVVAESVHFFFRSEETRSLLQRFREADFWPLGGQTAANVADAAGNAPLAGKVFIFTGSL 614 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R +A+ V + G +S+K D ++ GD GSK+ KA++LG+ +++ + F+ LL Sbjct: 615 PGMTRDQAKLLVEERGGAAVPSISKKVDYVVAGDKAGSKIAKAEKLGLTVIDFDGFMELL 674 Query: 719 QQYN 722 Q + Sbjct: 675 QGQD 678 >gi|15672401|ref|NP_266575.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. lactis Il1403] gi|81538437|sp|Q9CIE4|DNLJ_LACLA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|12723294|gb|AAK04517.1|AE006278_8 DNA ligase [Lactococcus lactis subsp. lactis Il1403] gi|326405996|gb|ADZ63067.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. lactis CV56] Length = 654 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 216/701 (30%), Positives = 352/701 (50%), Gaps = 49/701 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++ L ++++ + YY +P + DSEYD L + + P L R+ + P + Sbjct: 3 IESKIKELTEKLNQYAYEYYTLDEPSVEDSEYDRLYQELVKLEAENPQLTRA---DSPTH 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 + GG + K H SL +++ E+L + R+ + + + + E KIDG Sbjct: 60 RTGGVILDGFVKFRHPYNLYSLGDVFSREELAVWEERVRK-----EIANPEYICELKIDG 114 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 +++ YE G + AA RGDG +GE+++ ++ I +P L I I VRGE Y+ + Sbjct: 115 LSLSLYYENGLLMTAATRGDGTTGENITENVKRIKDVPLKLKEAI--DIVVRGEAYLPRK 172 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 +F LN E G P+ANPRNAA+G LR+L+ + + S Q E Sbjct: 173 NFAKLNKERELEGATPFANPRNAAAGTLRQLDTKIV-AKRGLATFLYQEASPATNDTQEE 231 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L+ LGF VN + A I + E +R LPYDIDG+V KV+ + Q++LG Sbjct: 232 VLEYFEELGFQVNPERKFARNMDEIWEFIEEATRLRDELPYDIDGVVVKVNNLAEQEELG 291 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++PRW I++KF +QA T +L +D +GRTG++TP A + PV + + ATLHN Sbjct: 292 FTVKAPRWAIAYKFPAEQAETEILSVDWTVGRTGVVTPTANMTPVLLAQTTVARATLHNV 351 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI+ +DIR+GD VL+ +AG++IPKV +++++R + P+ CP Sbjct: 352 DYIE-----------EKDIRIGDHVLIYKAGDIIPKVGKVLLDKRPEGLEGLEIPTKCPE 400 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S ++ + A RC L C AQ E+L HF SRDA NI GLG + F Sbjct: 401 CGSELIHFEDE------VALRCVNPL-CPAQIREKLIHFASRDAMNIVGLGPSVISQLFD 453 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + + AD++ L + + + + +I + R S E+ +F Sbjct: 454 KK----LVADVADLYQLTIEDLLT------LDKVKETLAQKIVSAIAQSRENSAEKLLFG 503 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVG + A+ L + + + + ++ + +P +G +IA A+V ++ Sbjct: 504 LGIRHVGGKAAKLLLERFANLRALSKATE----------EEISEIPSLGGVIATAVVSYF 553 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + ++ L N+ + K +V TG L ++R +A+E + LGA Sbjct: 554 ETDGAKILLDELENAGVNFDYLGAVNIEGILSGKTVVLTGKLTTLKRSEAKEKLEALGAN 613 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 VS +S+KTD+++ G+ GSKL KAQ LG++I +E+ L L Sbjct: 614 VSGSVSKKTDLVVAGEEAGSKLTKAQDLGIEIWSEQDLLDL 654 >gi|315613211|ref|ZP_07888121.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis ATCC 49296] gi|315314773|gb|EFU62815.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis ATCC 49296] Length = 652 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 212/700 (30%), Positives = 358/700 (51%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + ++ L ++ + YY P + DSEYD L R + A+PD + + P +++ Sbjct: 3 ERMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLA---DSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 60 GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKEL-----PQPTYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YEKG V A RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 115 ISLTYEKGILVVGATRGDGSVGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q ++L Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKVL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN A + I + E+ R LPYDIDG+V KV++ + Q++LG Sbjct: 232 EHLEQLGFVVNPKRILAESMDEIWDFIQEVGQEREKLPYDIDGVVIKVNDLAGQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCD 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S+++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 400 SQLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A ++ ADI+ L+ + G + S + LY +I + S E+ +F LG Sbjct: 450 -AANLVKDVADIYRLKEDDF------LLLEGVKEKSASKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG++ ++ L +++ S +N AQ D + + +G +IAQ++ ++ Sbjct: 503 IRHVGSKASQLLLQHFHSIENLAQA----------DPEEVASIESLGSVIAQSLQTYFAT 552 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + ++ L + + + + +V TG L+++ R +A+ + LGA V Sbjct: 553 EGSNILLDELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLTRSEAKSKLESLGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KT++++ G + GSKL+KAQ+LG+++ +E L Sbjct: 613 TGSVSKKTNLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652 >gi|315083671|gb|EFT55647.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL027PA2] Length = 740 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 211/746 (28%), Positives = 339/746 (45%), Gaps = 74/746 (9%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 AR + L Q I D YY P I D+EYD L + P+L P+ P Sbjct: 18 AAARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 74 Query: 75 LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G V H LSL+ ++ ++L +++ R+ K + F E K Sbjct: 75 TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 130 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192 IDG + + Y G+ V A RGDG GEDV+A +R I IPR L+ + +EVRGEV+ Sbjct: 131 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 190 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 DF LN +I G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Sbjct: 191 FPVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 250 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q K+ G PV+ + + + R + IDG+V KVD+ SL Sbjct: 251 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 310 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + A Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 370 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN +K + + +GD V++++AG+VIP+++ +V R+ + F P Sbjct: 371 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 420 DHCPSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474 Query: 492 DFFFKSED----------------------PAFSIRIPADIFT----LQRRQQTSTTKIE 525 E+ A + D +RR+ Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGPW 534 Query: 526 NILGFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 + + ++D + K ++ L R + +L IRHVG AR+LA + Sbjct: 535 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + S + + L V VG+IIA+++ +++ + + Sbjct: 595 FGSVEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 644 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG+N Sbjct: 645 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GSK KA+ LG I++E F +LL+ Sbjct: 705 AGSKETKARDLGRPILDEAGFRYLLE 730 >gi|146321044|ref|YP_001200755.1| NAD-dependent DNA ligase LigA [Streptococcus suis 98HAH33] gi|253751920|ref|YP_003025061.1| DNA ligase [Streptococcus suis SC84] gi|253753743|ref|YP_003026884.1| DNA ligase [Streptococcus suis P1/7] gi|253755379|ref|YP_003028519.1| DNA ligase [Streptococcus suis BM407] gi|166216248|sp|A4W1W6|DNLJ_STRS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145691850|gb|ABP92355.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Streptococcus suis 98HAH33] gi|251816209|emb|CAZ51836.1| DNA ligase [Streptococcus suis SC84] gi|251817843|emb|CAZ55596.1| DNA ligase [Streptococcus suis BM407] gi|251819989|emb|CAR46142.1| DNA ligase [Streptococcus suis P1/7] gi|292558495|gb|ADE31496.1| NAD-dependent DNA ligase [Streptococcus suis GZ1] gi|319758281|gb|ADV70223.1| NAD-dependent DNA ligase LigA [Streptococcus suis JS14] Length = 652 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 211/701 (30%), Positives = 359/701 (51%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +S L ++ + YYQ +P + D+EYD L R + A P+L P+ P ++ Sbjct: 2 KTRISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELETAHPELIL---PDSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG+M K +H P SL+ ++ E+L F R+ + + + E KIDG Sbjct: 59 VGGKMLDGFEKYSHVYPLFSLQDAFSREELEAFDQRVRK-----EFPQATYICELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G V A RGDG GE+++ ++ + +P L + I VRGE Y+ K Sbjct: 114 SISLTYEAGNLVVGATRGDGSVGENITENLKRVADVPLTLPEAV--DITVRGECYMPKAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N + G + NPRNAA+G LR+L+ + + S A Q ++ Sbjct: 172 FDRVNKQRQEAGEAEFVNPRNAAAGTLRQLDTGVV-AQRGLATFLYQEASPSEATSQSQV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+K+ LGF N+ A + + ++ R LPY+IDG+V KV++ ++Q++LG Sbjct: 231 LEKLDALGFVTNHEYCLAESIDDTWDFIEKIAERRDDLPYEIDGVVIKVNDLAIQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW +++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAVAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+ ++ R PS CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLKVVDKYRKEQEI-MPIPSHCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 QS + + A RC + C +Q + +L+HF SRDA NI GLG ++ F Sbjct: 399 QSDLQHYEDE------VALRCINPI-CPSQLMSKLEHFASRDAMNIAGLGSSIVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + ADI+ L + + GF + S LY +I ++ S E +F L Sbjct: 450 --GAGLVHDVADIYKLTVDDLLT------LEGFKEKSANKLYQAIQTSKSNSAECLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ ++ L + + + A D ++ + +G +IA+++ F+ Sbjct: 502 GIRHVGSKASKILVEKFGDLETLAFA----------DQEAIASLEGLGQVIAKSLTTFFA 551 Query: 618 NPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + L + V+ + + ++ + +V TG L++++R++A+ + LGA Sbjct: 552 SEGAQQLLAELKEAKVNLTYLGQVVDENAALSGMTVVLTGKLERMKRNEAKAKLEALGAN 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KT++++ G + GSKL KAQ+LG++I +E L Sbjct: 612 VAGSVSKKTNLVVAGTDAGSKLTKAQELGIEIKDEAWLESL 652 >gi|281490961|ref|YP_003352941.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. lactis KF147] gi|281374719|gb|ADA64239.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. lactis KF147] Length = 654 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 216/701 (30%), Positives = 352/701 (50%), Gaps = 49/701 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++ L ++++ + YY +P + DSEYD L + + P L R+ + P + Sbjct: 3 IESKIKELTEKLNQYAYEYYTLDEPSVEDSEYDRLYQELVKLEAENPQLTRA---DSPTH 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 + GG + K H SL +++ E+L + R+ + + + + E KIDG Sbjct: 60 RTGGVILDGFVKFRHPYNLYSLGDVFSREELAVWEERVRK-----EIANPEYICELKIDG 114 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 +++ YE G + AA RGDG +GE+++ ++ I +P L I I VRGE Y+ + Sbjct: 115 LSLSLYYENGLLMTAATRGDGTTGENITENVKRIKDVPLKLKEAI--DIVVRGEAYLPRK 172 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 +F LN E G P+ANPRNAA+G LR+L+ + + S Q E Sbjct: 173 NFAKLNKERELEGAAPFANPRNAAAGTLRQLDTKIV-AKRGLATFLYQEASPATNDTQEE 231 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L+ LGF VN + A I + E +R LPYDIDG+V KV+ + Q++LG Sbjct: 232 VLEYFEELGFQVNPERKFARNMDEIWEFIEEATRLRDELPYDIDGVVVKVNNLAEQEELG 291 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++PRW I++KF +QA T +L +D +GRTG++TP A + PV + + ATLHN Sbjct: 292 FTVKAPRWAIAYKFPAEQAETEILSVDWTVGRTGVVTPTANMTPVLLAQTTVARATLHNV 351 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI+ +DIR+GD VL+ +AG++IPKV +++++R + P+ CP Sbjct: 352 DYIE-----------EKDIRIGDHVLIYKAGDIIPKVGKVLLDKRPEGLEGLEIPTKCPE 400 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S ++ + A RC L C AQ E+L HF SRDA NI GLG + F Sbjct: 401 CGSELIHFEDE------VALRCVNPL-CPAQIREKLIHFASRDAMNIVGLGPSVISQLFD 453 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + + AD++ L + + + + +I + R S E+ +F Sbjct: 454 KK----LVADVADLYQLTIEDLLT------LDKVKETLAQKIVSAIAQSRENSAEKLLFG 503 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVG + A+ L + + + + ++ + +P +G +IA A+V ++ Sbjct: 504 LGIRHVGGKAAKLLLERFANLRALSKATE----------EEISEIPSLGGVIATAVVSYF 553 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + ++ L N+ + K +V TG L ++R +A+E + LGA Sbjct: 554 ETDGAKILLDELENAGVNFDYLGAVNIEGILSGKTVVLTGKLTTLKRSEAKEKLEALGAN 613 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 VS +S+KTD+++ G+ GSKL KAQ LG++I +E+ L L Sbjct: 614 VSGSVSKKTDLVVAGEEAGSKLTKAQDLGIEIWSEQDLLDL 654 >gi|331266328|ref|YP_004325958.1| DNA ligase, NAD-dependent [Streptococcus oralis Uo5] gi|326683000|emb|CBZ00617.1| DNA ligase, NAD-dependent [Streptococcus oralis Uo5] Length = 652 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 211/700 (30%), Positives = 357/700 (51%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + ++ L ++ + YY P + DSEYD L R + A+PD + + P +++ Sbjct: 3 ERMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLA---DSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 60 GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKEL-----PQPTYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YEKG V A RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 115 ISLTYEKGILVVGATRGDGSVGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q ++L Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKVL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN A I + E++ R LPYDIDG+V KV+ + Q++LG Sbjct: 232 KHLEQLGFVVNPKRILAENIDEIWDFIQEVEQERDNLPYDIDGVVIKVNNLAGQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRISEEKL-DIPTNCPSCD 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S+++ + A RC C AQ +E L HF SRDA NI GLG ++ F + Sbjct: 400 SQLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFATN 452 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 ++ ADI+ L+ + G + S + LY +I + S E+ +F LG Sbjct: 453 ----LVKDVADIYRLKEEDF------LLLEGVKEKSASKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG++ ++ L +++ S +N AQ D + + +G +IAQ++ ++ Sbjct: 503 IRHVGSKASQLLLQHFHSIKNLAQA----------DPEEVASIESLGSVIAQSLQTYFAT 552 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + ++ L + + + + +V TG L+++ R +A+ + LGA V Sbjct: 553 EGSKILLDELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLTRSEAKSKLESLGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KT++++ G + GSKL+KAQ+LG+++ +E L Sbjct: 613 TGSVSKKTNLVVAGADAGSKLQKAQELGIEVRDEAWLEGL 652 >gi|260655066|ref|ZP_05860554.1| DNA ligase, NAD-dependent [Jonquetella anthropi E3_33 E1] gi|260630177|gb|EEX48371.1| DNA ligase, NAD-dependent [Jonquetella anthropi E3_33 E1] Length = 670 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 222/712 (31%), Positives = 346/712 (48%), Gaps = 49/712 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R L + ++ + YY P++ D E+D L +I PD R P+ P + Sbjct: 4 RARYDELVETVNENSYLYYVKDAPVLSDFEWDQLMNELLSIEREHPDWIR---PDSPSRR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + KVTH IP LSLE +++ E+L ++ + + + E KIDG Sbjct: 61 VGGTALDAFEKVTHQIPMLSLEDVFSPEELTGWLAHAEKEIGSQS----EWCCELKIDGL 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y+ G FV A RGDGH GEDV+A +R + ++P L ++P ++EVRGEVY+ K Sbjct: 117 AISLIYQDGVFVRGATRGDGHVGEDVTANLRTVRSLPLKLRGSVPGLLEVRGEVYMDKTS 176 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 F ALN G +ANPRN A+G LR+L+PT R L F++ + E + Q + Sbjct: 177 FEALNRRREEAGEALFANPRNVAAGSLRQLDPTVTSQRNLQVFLYYVMNPHERGFETQSD 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L M +G PV R + + E + R L Y DG+V+K ++ L Sbjct: 237 CLNWMASVGLPVQPAWRVSRGTAEAAQFVEEWRDRRFDLSYGTDGVVFKANKLFDWDLLS 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +R+PRW ++ K+ ++ + L ID+ +GRTG++TPVA +PV + G ++ A+LHN Sbjct: 297 ATSRTPRWAVAFKYPPEEKTVHLDAIDVSVGRTGVITPVAIFQPVVLSGTNVSRASLHNG 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 I +DIRVGD + V++AGE+IP+VV + R PF P CP Sbjct: 357 GEIAR-----------KDIRVGDWITVRKAGEIIPEVVKSDASRRDGTQTPFIMPERCPS 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C VV+ AA RC ++C AQ L RL HF SR A ++ GLG+ Sbjct: 406 CGHPVVQLQGE------AALRC-QNVSCPAQMLARLVHFASRGAMDVRGLGEALAQQLLS 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 S + AD++ L Q + G+ S ++L ++ + L+R + + Sbjct: 459 SR----LVVTLADLYRLTADQLAG------LERMGEKSASSLVQALEGAKKRPLDRLLVA 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI VG AR+L + S + Q L +V +G IA ++ + Sbjct: 509 LGIPLVGPSAARALVGRFGSLEAIGQATE----------DELSKVEGIGPAIAGSVASWL 558 Query: 617 QNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + N ++ S + + +VFTG + + R +A E L Sbjct: 559 ADSANRALLQDFSSLGLEACTSREPTQPAQPGPWTGQVIVFTGEMASMPRSQASELARGL 618 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 GA V+ +S KT +++ G+ GSKL+KA LG+ +++EE+FL LQ +TL Sbjct: 619 GAKVTGSVSSKTTLLVAGEAAGSKLDKANSLGIPVISEEEFLSRLQAAKSTL 670 >gi|320546461|ref|ZP_08040776.1| NAD-dependent DNA ligase LigA [Streptococcus equinus ATCC 9812] gi|320448846|gb|EFW89574.1| NAD-dependent DNA ligase LigA [Streptococcus equinus ATCC 9812] Length = 652 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 222/701 (31%), Positives = 350/701 (49%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L E++ + YY +P + DSEYD L R + A P+L PN P + Sbjct: 2 KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELIL---PNSPTQE 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + + E KIDG Sbjct: 59 VGGLVLDGFEKYQHETPLYSLQDAFSREELEDFDRRVK-----AEFPNASYMAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y G A RGDG GE+++ ++ I IP L P I VRGE Y+ K Sbjct: 114 SISLVYVDGVLQVGATRGDGSVGENITENVKRIKDIPHK--LAQPLNITVRGEAYLPKTS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N+E G+ +ANPRNAA+G LR+LN + N + + Q + Sbjct: 172 FDKINEERRDSGQTEFANPRNAAAGTLRQLNTAVV-AKRNLATFLYQEVASTSMTTQNNV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+++ GF VN ++ I + E+ + R LPYDIDG+V KV+ ++Q++LG Sbjct: 231 LEELSRFGFSVNPRRITTSSMADIWKFIQEVAAERDNLPYDIDGIVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+ ++ ++R P P CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVDSKRDK-QVPMPIPESCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S ++ + A RC L C +Q ERL HF SRDA NI GLG + FK+ Sbjct: 399 GSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKLFKA 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 E + ADI+ L S + GF + S LY++I + S ++ +F L Sbjct: 452 E----LVHDVADIYQLTVEDLLS------LDGFKEKSAEKLYNAIQVSKENSADKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVGA+ +R L + + + D S+ + +G +IA ++ ++ Sbjct: 502 GIRHVGAKASRQLLEVFETIDQLVAA----------DADSIASIDGLGTVIANSLRSYFA 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + L + +++ +V TG L+++ R++A+E + LGA Sbjct: 552 KKEATELLHELKNVGVNFAYLGKKVPKDAQLAGLTVVLTGKLERLTRNEAKEKLQDLGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTDI++ G + GSKL KAQ LG+ + +E L Sbjct: 612 VTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDEAWLESL 652 >gi|239638039|ref|ZP_04678998.1| DNA ligase, NAD-dependent [Staphylococcus warneri L37603] gi|239596322|gb|EEQ78860.1| DNA ligase, NAD-dependent [Staphylococcus warneri L37603] Length = 668 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 239/716 (33%), Positives = 374/716 (52%), Gaps = 53/716 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + + ++ L ++ + YY P + DSEYD L I P+ P+ Sbjct: 1 MSELQNRVNDLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIHIESEHPEFK---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N EDLRKF RI ++ + E K Sbjct: 58 PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRENIG-----NVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++YE G+FV RGDG +GED++ +R I IP + + EVRGE Y+ Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLN--FEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + F+ LN+E G +P+ANPRNAA+G LR+L+ R L+ F++ + ++ A Sbjct: 171 PRKSFMNLNEEKEKNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSIFLYSINDFTDFEAT 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q L ++ LGF N+ + + G++ Y + + R LPYDIDG+V KV++ Q Sbjct: 231 TQSGALDELDELGFKTNHERERVSDIDGVLKYIEKWTAEREMLPYDIDGIVIKVNDLEQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++G +SPRW I++KF ++ T LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTELLDIELSIGRTGVVTPTAILEPVRVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V+VK+AG++IP+VV I++ R DA+ + P+ Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVVKKAGDIIPEVVRSIIDRRPEDAETYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLIEGLIHFVSRQAMNIDGLGTKIIQ 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++++ I+ ADIF + + G V NL ++I + ++ SLE Sbjct: 453 QLYEND----LIKDVADIF------YLEEEDLLPLERMGSKKVENLLEAIKQAKSQSLEH 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + +R LA+ Y + LI + +G +AQ++ Sbjct: 503 LLFGLGIRHLGVKASRVLAEKYETMDRLLTVTE----------EELIAIHDIGGKLAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SE-IENKKLVFTGTLQKIQRHKAQE 668 V + +N ++ L + + K K +V TG L+++ R++A + Sbjct: 553 VTYLENDDIRALIQKLKDKDVNMTYKGVKTTEIEGHPDFSGKTIVLTGKLEQMTRNEASQ 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 ++ GA V+ +++ TDI+I G + GSKL KA++ G +I EE+F + N Sbjct: 613 WLQMQGAKVTNSVNKSTDILIAGADAGSKLTKAEKFGTEIWTEEEFATKQNEINNE 668 >gi|295836378|ref|ZP_06823311.1| DNA ligase, NAD-dependent [Streptomyces sp. SPB74] gi|295825992|gb|EDY45591.2| DNA ligase, NAD-dependent [Streptomyces sp. SPB74] Length = 818 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 215/741 (29%), Positives = 352/741 (47%), Gaps = 66/741 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + R+E S + +E+ H YY +P++ D+++DAL RR A+ P L P+ Sbjct: 49 PAEVREEHSRVAREVDEHRYRYYVNDQPVVSDADFDALLRRLTALEEEHPQL---RTPDS 105 Query: 74 PLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P K+ G+ V H LSL+ +++ E L + R+ + + + E Sbjct: 106 PTQKVAGDYQQFTPFASVEHRERMLSLDNVFDDEGLAAWAERLAKEVGAPGYH---YLCE 162 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190 K+DG + + YE G+ AA RGDG GED++ +R I IP L+ PE++EVRGE Sbjct: 163 LKVDGLAVNLTYENGRLTRAATRGDGRVGEDITPNVRTISDIPEQLAGERVPELVEVRGE 222 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VY DF ALN ++ G KP+ANPRNAA+G LR+ +P TR L+ VHG+G Sbjct: 223 VYFPMEDFEALNARLVDAGEKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAREGF 282 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + + G P + A++ G+ S+ R ++ ++IDG+V K+DE Sbjct: 283 TIDRLSHAYELLHEWGLPTAKHNKVADSLDGVRSFIRYYGEHRHSVEHEIDGVVVKLDEI 342 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ +LG +R+PRW + KF ++ +T+L+DI + +GRTG +TP A +EP+ + G+ + Sbjct: 343 PLQGRLGSTSRAPRWATAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPIVVAGSEVE 402 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN+D +K + + +GD V++++AG+VIP+++ + + R + F Sbjct: 403 FATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSERAFV 451 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + + + RC +C AQ ER+ + R + +IE LG Sbjct: 452 MPAECPECGTPLRAM-----KEGDIDLRCPNARSCPAQLRERIFYLAGRKSLDIEHLGYV 506 Query: 490 QLDFFFKSEDPA-FSIRIPADIFTLQRRQQTSTTKI------------------------ 524 + +P+ +R D+F L + Sbjct: 507 AATALTQPLEPSEPPLRDEGDLFDLTAEELLPIRSYVLDQDSGLPKRDPVTGEEKIVTFF 566 Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 N G + ++ ++I + L + + L IRHVG A +LA+ + S Sbjct: 567 ANKEGVAKKNALSMLENIEAAKQRPLAQILTGLSIRHVGPVAAAALAREFRSIDRIFAAE 626 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY---QNPRNICAVEALLKEVSPSIGRHEK 641 N L VG IA ++ ++Y +N + + + Sbjct: 627 EN----------ELAETEGVGPTIAASLKQWYDAEENDWHREILRKWKAAGVRMEADESE 676 Query: 642 NVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 S +E +V TGTL++ R A+E + GA V+ +S+KT ++VGDNPGSK + Sbjct: 677 TDSGPRPLEGLTVVVTGTLERWTRDAAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYD 736 Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720 KA L V ++ E+ F LL Q Sbjct: 737 KALSLKVPVLEEDGFAILLDQ 757 >gi|72383117|ref|YP_292472.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL2A] gi|123746237|sp|Q46IA9|DNLJ_PROMT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|72002967|gb|AAZ58769.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL2A] Length = 690 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 220/720 (30%), Positives = 355/720 (49%), Gaps = 59/720 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L ++ + YY P I DS YD L R I + P L + P ++ Sbjct: 10 ERIKELRALLNKANYSYYVLDSPEIDDSVYDQLYRELIEIENIHPSLITD---DSPSQRL 66 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW-----QKKDDNSIFFTLEPK 133 GG + V H+IP LSL+ +N+ ++ + RI + K E K Sbjct: 67 GGVPSKGFKNVEHNIPLLSLDNAFNLNEVEAWYGRISKLISSENKNIKKVYDPELICELK 126 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVY 192 IDG I++RYE G A RGDG +GED++ IR I TIP L N P +E+RGE + Sbjct: 127 IDGNAISLRYENGILTRATTRGDGKTGEDITTNIRTISTIPLRLLLENPPLWVEIRGEAF 186 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251 + N F LN E + +ANPRN+ +G LR+L+P +R L+FF + L Sbjct: 187 MPNNIFNKLNIERKNNDQPLFANPRNSCAGTLRQLDPKIVASRKLDFFAYSLYFPENWEP 246 Query: 252 KG--------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 Q E L+ ++ +GF VN T + YY + + L Y DG+V Sbjct: 247 TDNNFKKPISQSESLEFLKNIGFKVNTTYETTKTLNEANKYYKYWEVKKDFLAYATDGIV 306 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 K+D+F +Q LG ++PRW I+ K+ ++ +T+L I Q+GR+G +TPVA E + + Sbjct: 307 VKIDKFEIQNLLGATNKAPRWAIAVKYPAEEKATKLRKIIFQVGRSGAVTPVAEFESIEL 366 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G + ATLHN + L D+ D ++V++AGE+IP+V+ +I R Sbjct: 367 AGTSVNRATLHNAKRLASL-----------DLHYEDTIIVRKAGEIIPEVIRVIKEFRKV 415 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 DA+ P CP C S+++ + N A +C C+A+ L+H+VS+ + NI Sbjct: 416 DAKLVQLPQNCPECNSKLILESNE------AITKCINYR-CAAKLKGLLRHWVSKGSMNI 468 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +GLG++ ++ ++ AD++ L+ + + FG+ S NL IN Sbjct: 469 DGLGEKIINQLVNE----GYVKSIADLYKLE------IDSLLELERFGEKSANNLLIEIN 518 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + +N + + ++ LGI H+G A+SL+ + S + A + + + Sbjct: 519 ESKNKNWHKQLYGLGIPHIGEANAKSLSNNFNSIEEL-------NAIAKESPEKISNIYG 571 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-----EKNVSSEIENKKLVFTGTL 658 G+ + AIV+++ + N ++ L K + S+ N S+ + K V TGTL Sbjct: 572 FGNEMKDAIVKWFDDSNNQTLIKEL-KAIGFSLKESLDSNYNSNQSNVFDGKSFVLTGTL 630 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R +A+E + G VS+ +S+KTD ++ G+ GSKL KAQ+LGVKI+NE + LL Sbjct: 631 DSLTRDEAKELIESAGGKVSSSISKKTDFLVSGEKAGSKLNKAQELGVKIINENELKLLL 690 >gi|159904348|ref|YP_001551692.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus str. MIT 9211] gi|254781392|sp|A9BDC5|DNLJ_PROM4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|159889524|gb|ABX09738.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Prochlorococcus marinus str. MIT 9211] Length = 697 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 216/734 (29%), Positives = 364/734 (49%), Gaps = 62/734 (8%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 + K L + ++ + YY P++ D+ YD L R I P L + Sbjct: 2 EQNSSNLSKRSFELRKLLNRANHAYYVLDTPLMEDTVYDRLYRELLNIEKNHPSLITA-- 59 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----NS 125 + P ++G KV H IP +SL+ +N E+L+ + RI + +K++ S Sbjct: 60 -DSPSQRLGSTPAKEFVKVEHKIPLMSLDNAFNFEELQDWDLRIRKLLNQKNNFGILKTS 118 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEI 184 I F E KIDG+ + + Y G V AA RGDG +GE+++A ++ I +IP L N P Sbjct: 119 IDFACELKIDGSALALSYANGVLVQAATRGDGVAGEEITANVKTITSIPLSLDIENPPSW 178 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL 243 +EVRGE ++ K F +N +ANPRNA +G LR+L+P +R L+FF + + Sbjct: 179 LEVRGEAFLPKQTFDGINLLRKQQREALFANPRNACAGTLRQLDPQIVASRQLDFFAYKM 238 Query: 244 GKTSEIFAKGQYEMLQ--------KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295 + +G+ ++ GF VN + + H + S+++ + R L Sbjct: 239 YLPKDWDPQGENIHQPEAQDAALKWLKKAGFKVNPNTKIFKSLHEVQSFFDIWEKKRHKL 298 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 PY DG+V KV+ F LQ+ LG +SPRW I+ K+ ++A T+L+++ Q+GRTG +TPV Sbjct: 299 PYTTDGVVVKVNNFKLQEMLGVTQKSPRWAIALKYPAEEAPTKLINLSYQVGRTGTVTPV 358 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 A EP+ + G ++ ATLHN D ++ L D+ D ++V++AGE+IP+VV Sbjct: 359 AEFEPIPLAGTIVRKATLHNADRLQSL-----------DLHNEDTIVVRKAGEIIPEVVC 407 Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475 ++ R ++ PS CP C ++ G AA +C L C A L+H+ Sbjct: 408 VLKELRPQNSTRLYLPSNCPECDEKL------VRGTDQAATKCVNNL-CPAIIQGALRHW 460 Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 VS+ A NI+G+G + ++ ++ D++ L + + G+ S Sbjct: 461 VSKKAMNIDGVGSKVIEQLVNK----GIVKSIPDLYELNYQMLFG------LERMGEKSA 510 Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 + +SI K + + ++ LGI H+G A+ LA + S + N Sbjct: 511 HKVIESIEKSKTQPWNKQLYGLGILHIGEGNAKLLANAFASEDELSHAAIN-------SP 563 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP---------SIGRHEKNVSSE 646 + ++ +G+ + +++ E++++ N + L + +I + + E Sbjct: 564 ERIAKIHGIGNEMVESLQEWFEDESNQRIISRLKELGVQLKSTANDSGAIKSVINSSNKE 623 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + K+ V TGT++ I R AQE + + G V++ +S KT +I G NPGSKL KA++LG+ Sbjct: 624 VLGKRFVLTGTMESINRDVAQEMIEKAGGKVNSSISSKTTYLITGSNPGSKLSKAKELGI 683 Query: 707 KIMNEEQFLFLLQQ 720 KI+NEE F LL + Sbjct: 684 KIINEEDFFNLLSK 697 >gi|119356312|ref|YP_910956.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides DSM 266] gi|166215573|sp|A1BDQ5|DNLJ_CHLPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|119353661|gb|ABL64532.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides DSM 266] Length = 676 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 222/718 (30%), Positives = 365/718 (50%), Gaps = 53/718 (7%) Query: 12 LSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 +S RK + L +EI+ H+ YY ++P I D E+D L R + AFPD Sbjct: 1 MSDAVNVRKAIEELRREINRHNTLYYVDARPEISDYEFDRLMERLIELEKAFPDFV---T 57 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P+ P +++GG + V H P LSL +++ ++ F +R+ + + Sbjct: 58 PDSPSHRVGGAITREFPSVRHREPMLSLSNTYSLAEVEDFYSRVKKLLLVEGVREQDMAA 117 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-------LNIPE 183 E K DG I++ Y G V A RGDG G+D++ ++ + ++P + I Sbjct: 118 ELKFDGVAISLLYRDGLLVQGATRGDGTEGDDITTNLKTLSSVPLRIPLTSLPVIEGIER 177 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHG 242 IE+RGEV++ K+DF LN+ +ANPRNA +G L+ + + R LNF + Sbjct: 178 DIEIRGEVFMQKDDFARLNEARPE--EDRFANPRNATAGTLKLQDSGEVARRRLNFVAYY 235 Query: 243 LGKTSEIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 L +S+ QY+ L+ + LGF R I + R LPY+ DG Sbjct: 236 LRLSSQDSFLLTQYDRLELLGQLGFFTGKHYRLCRDMKEIGDFIGYWAVERWNLPYETDG 295 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V K+++ +L ++G A+SPRW I++K+ +QA T L + Q+GR G +TPVA LEPV Sbjct: 296 VVLKLNDVALWPRIGATAKSPRWAIAYKYPAQQAKTVLQGVAFQVGRLGTVTPVAELEPV 355 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G+ ++ +TLHN D I+ L + + DRV+++++GEVIPKV+ ++++ER Sbjct: 356 RLAGSTVSRSTLHNFDEIERL-----------GLMLHDRVIIEKSGEVIPKVIRVVLDER 404 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 +A+P PS CP C + + + N ++ C +C AQ RL HF SR+A Sbjct: 405 PENAEPVGVPSVCPECGASLEKPENE------VSYYCPDQDSCPAQIRGRLLHFASRNAL 458 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +I+ LG+ + + +R D++ LQ+ Q +E + G S NL + Sbjct: 459 DIQSLGESLVAQLVQK----GLVRDAGDLYLLQQPQ------LEALERMGRKSAHNLLRA 508 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 + + R S ER +++LGIRHVG AR LA+ Y + + L V Sbjct: 509 LQESREKSYERLLYALGIRHVGQATARELARAYETVEALQNASE----------EELATV 558 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS-IGRHEKNVSSEIENKKLVFTGTLQK 660 P VG ++A ++ +++ + L P +K ++ E ++FTG L++ Sbjct: 559 PDVGPVVAHSVKDYFSKSSTQMLLRKLRDAGFPLRFTGPQKLINRNFEGVNVLFTGALER 618 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A E V Q G V +SR T +++ G PGSKL+KA++LGVK+++E++F +L Sbjct: 619 YGRQQASELVQQRGGRVVGSVSRSTGVVVAGSEPGSKLDKARKLGVKVISEDEFNAML 676 >gi|19745839|ref|NP_606975.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS8232] gi|94990137|ref|YP_598237.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS10270] gi|139474058|ref|YP_001128774.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes str. Manfredo] gi|81632934|sp|Q8P1L1|DNLJ_STRP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123258039|sp|Q1JHP3|DNLJ_STRPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166216247|sp|A2RFD0|DNLJ_STRPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|19747987|gb|AAL97474.1| putative DNA ligase [Streptococcus pyogenes MGAS8232] gi|94543645|gb|ABF33693.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS10270] gi|134272305|emb|CAM30559.1| DNA ligase [Streptococcus pyogenes str. Manfredo] Length = 652 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 211/701 (30%), Positives = 352/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L ++ + YY P + DS+YD L R + ++P+ + P + Sbjct: 2 KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQ---DSPTQQ 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + + E KIDG Sbjct: 59 VGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVK-----AEFPNATYLAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G A RGDG+ GE+++ I+ I IP LS + I VRGE Y+S+ Sbjct: 114 SISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSEPL--TITVRGEAYMSRQS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N+ G +ANPRNAA+G LR+L+ + + + S Q E+ Sbjct: 172 FKAINEARQENGETEFANPRNAAAGTLRQLDTSVV-AKRQLATFLYQEASPTARNQQNEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ LGF VN + ++ I + +++ R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+++++++R+ P CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +V + A RC L C + L+HF SRDA NI GLG ++ F Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + ADI+ L + + G + S L +I ++ S E+ +F L Sbjct: 450 --LAGFVHDVADIYQLTKEDFM------QLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRH+G++++R + + Y + R+ +G IAQ++ ++++ Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKE----------EEIARIDGLGSTIAQSLTQYFE 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 V+ L + N + + +V TG L ++ R++A++ + LGA Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTD++I G + GSKLEKA+ LG++I +E+ L Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRKL 652 >gi|260889570|ref|ZP_05900833.1| DNA ligase, NAD-dependent [Leptotrichia hofstadii F0254] gi|260860981|gb|EEX75481.1| DNA ligase, NAD-dependent [Leptotrichia hofstadii F0254] Length = 702 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 232/714 (32%), Positives = 376/714 (52%), Gaps = 48/714 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED-- 70 S +++ + L EI YH++ YY KP+I D EYDAL R + +P+L ++E+ Sbjct: 22 SFSDVQEKYAKLRNEIEYHNNLYYNEDKPLISDMEYDALMRELKQLEQKYPELLKNEENG 81 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----DNSI 126 + P KIGG + KV H +P LSL +NI ++ F RI + ++ + Sbjct: 82 ESSPTEKIGGTASEKFSKVRHRVPMLSLSNTYNISEIEDFDKRIKKIILSENVKEHSKEL 141 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 + LE K+DG I++ YE G V A RGDG GEDV+ I I TIP+ L NI +E Sbjct: 142 EYILELKLDGLSISLIYENGVLVQAVTRGDGQVGEDVTENIMEITTIPKKLKENIS--LE 199 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245 VRGE+ + + F +N E G +ANPRNAASG +R+L+ T R L+ +++ L Sbjct: 200 VRGEIILPISSFNRINQEREDDGEDVFANPRNAASGTIRQLDKTIVAERGLDCYLYYLVN 259 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 E ++ + LGF + F + ++ + R L Y+ DGLV K Sbjct: 260 AENYGINTHLESIEYIEKLGFKTTKIFEKYTDFKELEKSIDKWHNYRKKLDYETDGLVIK 319 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ F+L + LG +SPRW I++KF +Q T+L+D+ Q+GRTG++TPVA LE VN+ G Sbjct: 320 VNNFALYETLGYTTKSPRWAIAYKFPAEQVKTKLMDVTFQVGRTGVITPVAELEAVNLSG 379 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++ A+LHN D I+ +DI++GD V+V++A E+IP+VV+++ ++R Sbjct: 380 SVVKRASLHNFDEIRR-----------KDIKIGDNVIVEKAAEIIPQVVNVVFDDRTGQE 428 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ CP+C S + + + A +C L C + ++ +FVSRDA NI G Sbjct: 429 IEIQEPANCPVCNSELAHEEG------LVALKCHNPL-CPEKVKRQIAYFVSRDAMNISG 481 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG + ++ F + I+ DI++L++ ++ ++EN+ G SV NL +SI Sbjct: 482 LGDKIVEKFIE----LGKIKTIVDIYSLEKYRE----ELENLEKMGQKSVDNLINSIESS 533 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 +N + +++LGI VG A L K + + +N N +L+ V +G Sbjct: 534 KNRDFSKVLYALGIPFVGKFNANLLTKTFKNIENL----------KNQSIENLLAVKGIG 583 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH---EKNVSSEIENKKLVFTGTLQKIQ 662 D +A A+ F + N + L E+ + I++K + TG LQK + Sbjct: 584 DKVAVAVNTFLNDEDNWKIITDLKNIGLQFAVDENNSEEIADNPIKDKNFLATGKLQKYK 643 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 R+ ++ + G + +S+ D +I G+ GSKLEKA++LGV+I+ E++F Sbjct: 644 RNDIKDIILSKGGNYLSAVSKNLDFLIAGEKAGSKLEKAEKLGVRILTEDEFEK 697 >gi|298208451|ref|YP_003716630.1| DNA ligase [Croceibacter atlanticus HTCC2559] gi|83848374|gb|EAP86243.1| DNA ligase [Croceibacter atlanticus HTCC2559] Length = 664 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 211/706 (29%), Positives = 359/706 (50%), Gaps = 47/706 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 + ++ L +E+ H+ YY KP I D ++D ++ + P+ D N P Sbjct: 3 VKDQIQQLREELRQHNYNYYVLDKPEISDYDFDQKLKQLQDLETENPEF---YDANSPTL 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ + TH SL+ ++ EDL + RI + D + +T E K DG Sbjct: 60 RVGGQVTKNFDTTTHDYRMYSLDNSYSKEDLEDWEKRIMKMV----DGDVHYTCELKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I++ YE G+ + A RGDG G++V+ ++ I +IP L+ + P+ ++RGE+ + Sbjct: 116 ASISLTYEDGELIRAVTRGDGFKGDNVTNNVKTIRSIPLKLNGDYPKRFDIRGEIILPLE 175 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N E +A G + YANPRN ASG L+ + T++++ + + K Q+E Sbjct: 176 GFTKMNAERVANGEEAYANPRNTASGSLKLQDSTEVSKRPLDCLLYSIIGKNLNFKTQFE 235 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+K R GF V A + ++++ N + R LPY+ DG+V KV+ Q++LG Sbjct: 236 GLEKAREWGFKVPEVATLAKSTKEVMAFVNYWDTHRHDLPYETDGVVIKVNNLQQQEELG 295 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A++PRW +++KF +Q ST L I Q+GRTG +TPVA L PV + G + A+LHN Sbjct: 296 YTAKAPRWAMAYKFKAEQVSTVLEKITYQVGRTGAITPVANLIPVQLAGTTVKRASLHNA 355 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L DIR D V V++ GE+IPK++ + +R +++P + CP Sbjct: 356 DQIEKL-----------DIREEDTVFVEKGGEIIPKIIGVDFTKRDKNSKPTQYIEHCPE 404 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C++ +VR+ A H C C Q + R++H++SR A +IEGLG + + Sbjct: 405 CETPLVRNEGE------AQHYCPNEERCPPQVVGRIQHYISRKALDIEGLGGETVALLAN 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 A I+ AD++TL+ + + S NL + I + I ER +F Sbjct: 459 ----AGLIKNYADLYTLKIED------VLPLERMAQKSAENLINGIEASKQIPFERVLFG 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVG +A++L K + + +N A + + +G IA+++V F+ Sbjct: 509 LGIRHVGETVAKTLVKTFKTIENLANAKEEELVEVEE----------IGGKIAESVVVFF 558 Query: 617 QNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + V+ L + + ++++E + +V +G K+ R + ++ + G Sbjct: 559 SDEYKKETVQRLKEYGVQLEISAEQLQGQTNKLEGEIIVVSGVFNKLSRTELKKAIEDNG 618 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 VS+ +S KT ++ G+N G SK KA+ L V I+ E++FL +Q Sbjct: 619 GKVSSSISSKTTYLVAGENMGPSKRTKAEGLNVPIITEDEFLDKIQ 664 >gi|21910027|ref|NP_664295.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS315] gi|28896275|ref|NP_802625.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes SSI-1] gi|81759290|sp|Q8K831|DNLJ_STRP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|21904217|gb|AAM79098.1| putative DNA ligase [Streptococcus pyogenes MGAS315] gi|28811526|dbj|BAC64458.1| putative DNA ligase [Streptococcus pyogenes SSI-1] Length = 652 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 211/701 (30%), Positives = 351/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L ++ + YY P + DS+YD L R + ++P+ + P + Sbjct: 2 KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQ---DSPTQQ 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + + E KIDG Sbjct: 59 VGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVK-----AEFPNATYLAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G A RGDG+ GE+++ I+ I IP LS + I VRGE Y+S+ Sbjct: 114 SISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSEPL--TITVRGEAYMSRQS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N+ G +ANPRNAA+G LR+L+ + + S Q E+ Sbjct: 172 FKAINEGRQENGETEFANPRNAAAGTLRQLDTAVV-AKRQLATFLYQEVSPTARNQQNEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ LGF VN + ++ I + +++ R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+++++++R+ P CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +V + A RC L C + L+HF SRDA NI GLG ++ F Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + ADI+ L + + G + S L +I ++ S E+ +F L Sbjct: 450 --LAGFVHDVADIYQLTKEDFM------QLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRH+G++++R + + Y + R+ +G IAQ++ ++++ Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKE----------EEIARIDGLGSTIAQSLTQYFE 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 V+ L + N + + +V TG L ++ R++A++ + LGA Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTD++I G + GSKLEKA+ LG++I +E+ L Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRQL 652 >gi|88803633|ref|ZP_01119157.1| putative DNA ligase [Polaribacter irgensii 23-P] gi|88780366|gb|EAR11547.1| putative DNA ligase [Polaribacter irgensii 23-P] Length = 665 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 221/705 (31%), Positives = 356/705 (50%), Gaps = 46/705 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + + L E++ H+ YY +I D ++D ++ + + P L D N P Sbjct: 3 AAQTIQLLRDELNTHNYNYYVLDNGMISDFDFDVKLKKLEQLEKENPLLF---DANSPTQ 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + + V H SL+ ++ EDL + R+ + + +T E K DG Sbjct: 60 RVGGAVTKNFNTVVHKNRMYSLDNSYSKEDLLDWEKRVEKVLGSSA---LEYTCELKFDG 116 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I + YE G+FV A RGDG G++V+ I+ I +IP LS + E+RGE+ + + Sbjct: 117 ASINLTYENGQFVKAVTRGDGFQGDEVTNNIKTIRSIPLSLSADFVHNFEMRGEIILPLD 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 F ++N E IA G + Y NPRN ASG L+ + ++ + + TSE K +E Sbjct: 177 GFNSMNAERIANGEEEYRNPRNTASGSLKLQDSAEVAKRPLDCLLYQIVTSERKYKTHFE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ R +GF V ++ + + + + R LPY+ DG+V KV++ Q++LG Sbjct: 237 SLENARRVGFKVPKAIKLVKSIDAVFDFVSYWDEKRHDLPYETDGIVIKVNDLQQQEELG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A++PRW I++KF Q +T L I Q+GRTG +TPVA L PV + G + A+LHN Sbjct: 297 YTAKAPRWAIAYKFKATQVTTILNAISYQVGRTGAITPVANLNPVQLAGTTVKRASLHNA 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L DIR D V V++ GE+IPK+ + R +++P + + CP Sbjct: 357 DQIEKL-----------DIREKDTVFVEKGGEIIPKITAVDFTRRLENSEPTRYATNCPE 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + +VR A H C C+ Q R++HF+SR A +IEGLG + +D K Sbjct: 406 CNTLLVRSEG------DAKHYCPNEFGCAPQITGRIQHFISRKAMDIEGLGGETVDLLRK 459 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD++ L Q + + S N+ I K + I E+ +F+ Sbjct: 460 E----GCIQNYADLYDLTVEQVI------PLERMAEKSAQNMIAGIEKSKEIPFEKVLFA 509 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG +A+ LAKY+ S N ++ LI V +GD IAQ+I++F Sbjct: 510 LGIRFVGETVAKKLAKYFKSIDNLMHA----------EFEVLISVDEIGDRIAQSIIDFS 559 Query: 617 QNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + NI + L E +N + ++ + V +G ++ R++ ++ + G Sbjct: 560 SDEGNIQLINRLKSYGVQLEVSAEILENQTELLKGQVFVVSGVFHQLSRNELKKAIEDNG 619 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 VSA +S+KT+ I+ GDN G SKL KAQ LG++I++E+ + + Sbjct: 620 GKVSASISKKTNYIVAGDNMGPSKLTKAQDLGIEIISEQNLIDKI 664 >gi|237733138|ref|ZP_04563619.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229383820|gb|EEO33911.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 664 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 214/703 (30%), Positives = 349/703 (49%), Gaps = 47/703 (6%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 L+ I YH+D YY P I D EYD + + + P+ S + P K+G Sbjct: 6 RYKELKATILYHNDRYYNQDNPEITDYEYDMMMQELKGLEQKHPEYITS---DSPTQKVG 62 Query: 80 GEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + V H++P LSL+ +++ ED+ F+ + F +E KIDG Sbjct: 63 GSAKREAGVLVRHNVPMLSLQDVFSKEDVDAFVADMQEQLV-----DPTFVVEYKIDGLS 117 Query: 139 ITIRYEKGKFVYAALRGDGH-SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + +RY GK A RGDG GEDV+ + I + L I E +EVRGEVY++ Sbjct: 118 MALRYVNGKLDVAVTRGDGVLQGEDVTVNAKVIKDVKNTLKEPI-EYLEVRGEVYMTNEA 176 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N+ G+K +ANPRN A+G LR+L+ + R L+ FV + E Sbjct: 177 FDKVNEIQEIKGKKLFANPRNCAAGTLRQLDSSITKERNLSMFVFNIQDAKGREFISHSE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + ++ G + + T + + R L YDIDG V K+D F+ +++LG Sbjct: 237 GYEYLKRQGIKIIEDYKICKTAKEVWEAIEAIGENRDKLGYDIDGAVVKIDSFADRQKLG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ PRW +++K+ ++ T+LL I++ +GRTG +TP A EP+ + G ++ ATLHN+ Sbjct: 297 ATAKVPRWAVAYKYPPEEKETKLLAIELSVGRTGRITPTAIFEPIRLCGTTVSRATLHNQ 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+I L D+R+GD ++V ++GE+IPKV ++ +R D+ P+ + CP+ Sbjct: 357 DFIDDL-----------DVRIGDTIVVYKSGEIIPKVKGVVKEKRPADSVPYVIGNTCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + VR+ + K +C ++ + + +FV RDA +I+G G ++ Sbjct: 406 CGAPAVREGDNADIK-------CTNHSCPSKLVRNIVNFVGRDAMDIKGFGFAYVETLVD 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 ++ +DI+ L ++Q K S NL ++I +N + + S Sbjct: 459 H----GYLKDLSDIYGLIDKRQELLDKKII---GLVKSTDNLLNAIEGSKNNDAIKLLTS 511 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +VG A+SL K + S N + + LI V +GDI A AI+ ++ Sbjct: 512 LGISNVGKSAAKSLMKKFKSIDNLMKA----------SYAQLIEVNDIGDISAMAIINYF 561 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 +NP N V+ L + ++ + K V TGTL + R A E + + G Sbjct: 562 KNPDNQAVVQRLKEYGVNMNIIEAQDGDERFDGKTFVVTGTLPTLSRKAASELIEKHGGK 621 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 VS +S+KTD ++ G+N GSKL KAQ LG+ +++EE L +++ Sbjct: 622 VSGSVSKKTDYLLAGENAGSKLTKAQNLGINVISEETLLEMVK 664 >gi|68536402|ref|YP_251107.1| NAD-dependent DNA ligase LigA [Corynebacterium jeikeium K411] gi|123748223|sp|Q4JUL8|DNLJ_CORJK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|68264001|emb|CAI37489.1| DNA ligase [Corynebacterium jeikeium K411] Length = 695 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 200/716 (27%), Positives = 338/716 (47%), Gaps = 57/716 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + L ++ +H YY Y +P I D+++DAL + + A P++ P + Sbjct: 4 QSRWQELADQVRHHRQLYY-YGEPEISDADFDALLQELKDLEQAHPEVVTGA---SPTEE 59 Query: 78 IGGEM--NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 + + V H LSL+ +++ E L ++ R + + E KID Sbjct: 60 VAPAPPTSSPFRNVDHREQMLSLDNVFDTEQLAGWLDRT---------PAKTYLTELKID 110 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRGEV 191 G I + Y G+ A RGDG +GED++ R + IP L PE++E+RGEV Sbjct: 111 GASINLLYIDGQLELALTRGDGTTGEDITHNARTLDDIPDTLHGTDEFPVPELVEIRGEV 170 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 +I DF A+N + A G K +ANPRNAA+G +R+ N R L HG+G Sbjct: 171 FIDVEDFAAMNAQRQAEGLKMFANPRNAAAGAMRQKNSADTAKRPLKLICHGIGAREGFS 230 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q++ + + G PV+ +Q ++ + + R +++DGLV KVD Sbjct: 231 PASQHDAYRAIAAWGLPVSPYTKQVHSAKEVQQQVEYWGNHRHDAAHEMDGLVVKVDSLE 290 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q +LG +R+PRW I++K+ ++A T L +I + IGRTG TP A + P + G+ ++ Sbjct: 291 EQLELGHTSRAPRWAIAYKYPPEEAMTTLHNIRVGIGRTGRATPYAVMAPKYVAGSTVSM 350 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN + + +GD + +++AGEVIP+V+ + ++R +PF F Sbjct: 351 ATLHNPTEAHR-----------KGVLLGDTITIRKAGEVIPEVLGPVEDKRTGAERPFLF 399 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 +FCP C +R+ + A RC C Q RL + SR AF+I+ LG++ Sbjct: 400 STFCPECGTRLA-----PSKVGDADWRCPNTQYCPGQLHTRLTYLASRKAFDIDALGEKG 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 S + +++F L+ T+ G + S L + + + L Sbjct: 455 AYDLIHS----GVLADESELFDLRAEDLEKTSSYATKAGKLNKSGETLLEKLQSAKEADL 510 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R + +L IRHVG A++LAK++ S ++ A + + V + IA+ Sbjct: 511 WRVLVALSIRHVGPTAAKALAKHFESVEDIASA----------SAEEMAGIDGVAETIAE 560 Query: 611 AIVEFYQNPRNICAVEALLKEVSPS-------IGRHEKNVSSEIENKKLVFTGTLQKIQR 663 +I +++ + V+ G + S+ +E +V TG+L+ R Sbjct: 561 SISDWFTVDWHRRIVDRWAAAGVRMRREAGNVPGAADGVDSALLEGLTIVVTGSLEDFDR 620 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + G + +S+KTD ++ G+ GSKL+KA+ LGV +++E F LL+ Sbjct: 621 TAAKEAIEARGGKAAGSVSKKTDFLVAGEKAGSKLKKAEDLGVPVLDEAAFKELLE 676 >gi|71903217|ref|YP_280020.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS6180] gi|123761437|sp|Q48UE1|DNLJ_STRPM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|71802312|gb|AAX71665.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS6180] Length = 652 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 211/701 (30%), Positives = 352/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L ++ + YY P + DS+YD L R + ++P+ + P + Sbjct: 2 KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQ---DSPTQQ 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + + E KIDG Sbjct: 59 VGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVK-----AEFPNATYLAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G A RGDG+ GE+++ I+ I IP LS + I VRGE Y+S+ Sbjct: 114 SISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSEPL--TITVRGEAYMSRQS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N+ G +ANPRNAA+G LR+L+ + + S Q E+ Sbjct: 172 FKAINEARQENGETEFANPRNAAAGTLRQLDTAVV-AKRQLATFLYQEASPTARNQQNEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ LGF VN + ++ I ++ +++ R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWNFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+++++++R+ P CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +V + A RC L C + L+HF SRDA NI GLG ++ F Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + ADI+ L + + G + S L +I ++ S E+ +F L Sbjct: 450 --LAGFVHDVADIYQLTKEDFM------QLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRH+G++++R + + Y + R+ +G IAQ++ ++++ Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKE----------EEIARIDGLGSTIAQSLTQYFE 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 V+ L + N + + +V TG L ++ R++A++ + LGA Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTD++I G + GSKLEKA+ LG++I +E+ L Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRQL 652 >gi|167756540|ref|ZP_02428667.1| hypothetical protein CLORAM_02077 [Clostridium ramosum DSM 1402] gi|167702715|gb|EDS17294.1| hypothetical protein CLORAM_02077 [Clostridium ramosum DSM 1402] Length = 664 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 214/703 (30%), Positives = 349/703 (49%), Gaps = 47/703 (6%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 L+ I YH+D YY P I D EYD + + + P+ S + P K+G Sbjct: 6 RYKELKATILYHNDRYYNQDNPEITDYEYDMMMQELKGLEQKHPEYITS---DSPTQKVG 62 Query: 80 GEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + V H++P LSL+ +++ ED+ F+ + F +E KIDG Sbjct: 63 GSAKREAGVLVRHNVPMLSLQDVFSKEDVDAFVADMQEQLV-----DPTFVVEYKIDGLS 117 Query: 139 ITIRYEKGKFVYAALRGDGH-SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + +RY GK A RGDG GEDV+ + I + L I E +EVRGEVY++ Sbjct: 118 MALRYVNGKLDVAVTRGDGVLQGEDVTVNAKVIKDVKNTLKEPI-EYLEVRGEVYMTNEA 176 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N+ G+K +ANPRN A+G LR+L+ + R L+ FV + E Sbjct: 177 FDKVNEIQEIKGKKLFANPRNCAAGTLRQLDSSITKERNLSMFVFNIQDAKGREFISHSE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + ++ G + + T + + R L YDIDG V K+D F+ +++LG Sbjct: 237 GYEYLKRQGIKIIEDYKICKTAKEVWEAIEAIGENRDKLGYDIDGAVVKIDSFADRQKLG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ PRW +++K+ ++ T+LL I++ +GRTG +TP A EP+ + G ++ ATLHN+ Sbjct: 297 ATAKVPRWAVAYKYPPEEKETKLLAIELSVGRTGRITPTAIFEPIRLCGTTVSRATLHNQ 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+I L D+R+GD ++V ++GE+IPKV ++ +R D+ P+ + CP+ Sbjct: 357 DFIDDL-----------DVRIGDTIVVYKSGEIIPKVKGVVKEKRPADSAPYVIGNTCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + VR+ + K +C ++ + + +FV RDA +I+G G ++ Sbjct: 406 CGAPAVREGDNADIK-------CTNHSCPSKLVRNIVNFVGRDAMDIKGFGFAYVETLVD 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 ++ +DI+ L ++Q K S NL ++I +N + + S Sbjct: 459 H----GYLKDLSDIYGLIDKRQELLDKKII---GLVKSTDNLLNAIEGSKNNDAIKLLTS 511 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +VG A+SL K + S N + + LI V +GDI A AI+ ++ Sbjct: 512 LGISNVGKSAAKSLMKKFKSIDNLMKA----------SYAQLIEVNDIGDISAMAIINYF 561 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 +NP N V+ L + ++ + K V TGTL + R A E + + G Sbjct: 562 KNPDNQAVVQRLKEYGVNMNIIEAQDGDERFDGKTFVVTGTLPTLSRKAASELIEKHGGK 621 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 VS +S+KTD ++ G+N GSKL KAQ LG+ +++EE L +++ Sbjct: 622 VSGSVSKKTDYLLAGENAGSKLTKAQNLGINVISEETLLEMVK 664 >gi|223932796|ref|ZP_03624793.1| DNA ligase, NAD-dependent [Streptococcus suis 89/1591] gi|223898505|gb|EEF64869.1| DNA ligase, NAD-dependent [Streptococcus suis 89/1591] Length = 652 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 212/701 (30%), Positives = 360/701 (51%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +S L ++ + YYQ +P + D+EYD L R + A P+L P+ P ++ Sbjct: 2 KTRISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELETAHPELIL---PDSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG+M K +H P SL+ ++ E+L F R+ + + + E KIDG Sbjct: 59 VGGKMLDGFEKYSHVYPLFSLQDAFSREELEAFDQRVRK-----EFPQATYICELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G V A RGDG GE+++ ++ + +P L + I VRGE Y+ K Sbjct: 114 SISLTYEAGNLVVGATRGDGSVGENITENLKRVADVPLTLPEAV--DITVRGECYMPKAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N + G +ANPRNAA+G LR+L+ + + S A Q ++ Sbjct: 172 FDRVNKQRQEAGEAEFANPRNAAAGTLRQLDTGVV-AQRGLATFLYQEASPSEATSQSQV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+K+ LGF N+ A + + ++ R LPY+IDG+V KV++ ++Q++LG Sbjct: 231 LEKLDALGFVTNHEYCLAESIDDTWDFIEKIAERRDDLPYEIDGVVIKVNDLAIQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW +++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAVAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+ ++ R PS CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLKVVDKYRKEQEI-MPIPSHCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 QS + + A RC + C +Q + +L+HF SRDA NI GLG ++ F Sbjct: 399 QSDLQHYEDE------VALRCINPI-CPSQLMSKLEHFASRDAMNIAGLGSSIVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + ADI+ L + + GF + S LY +I ++ S E +F L Sbjct: 450 --GAGLVHDVADIYKLTVDDLLT------LEGFKEKSADKLYQAIQTSKSNSAECLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ ++ L + + + A D ++ + +G +IA+++ F+ Sbjct: 502 GIRHVGSKASKILVEKFGDLETLAFA----------DQEAIALLEGLGQVIAKSLTTFFA 551 Query: 618 NPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + L + V+ + + ++ + +V TG L++++R++A+ + LGA Sbjct: 552 SEGAQQLLAELKEAKVNLTYLGQVVDENAALSGMTVVLTGKLERMKRNEAKAKLEALGAN 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KT++++ G + GSKL KAQ+LG++I +E L Sbjct: 612 VAGSVSKKTNLVVAGTDAGSKLTKAQELGIEIKDEAWLESL 652 >gi|119717662|ref|YP_924627.1| DNA ligase, NAD-dependent [Nocardioides sp. JS614] gi|166216220|sp|A1SMA5|DNLJ_NOCSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|119538323|gb|ABL82940.1| DNA ligase, NAD-dependent [Nocardioides sp. JS614] Length = 752 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 211/710 (29%), Positives = 356/710 (50%), Gaps = 35/710 (4%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+E + +EI YY P I D+++D RR +A+ FP+L P+ P Sbjct: 64 REEHRLIAEEIEEARWRYYVLDSPTIDDADFDRRMRRLEALEEEFPEL---RTPDSPTQT 120 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG ++ H SL+ +++E++ + R+ R E K+DG Sbjct: 121 VGGAVSTDFTSHPHLRRMESLDNAFSVEEVEAWYARLRR----DGVEDPALLCELKVDGL 176 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRGEVYI 193 I + YE+G+ V A RGDG +GEDV++ ++ I ++P L+ P ++EVRGEV++ Sbjct: 177 AINLLYEEGRLVRALTRGDGTTGEDVTSNVKTITSVPHRLTGTDEFPVPALVEVRGEVFL 236 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 F LN+ ++ G+ P+ANPRN+A+G LR+ +P +R L HG+G+ + Sbjct: 237 PVEAFERLNESLLEAGKAPFANPRNSAAGSLRQKDPRITASRALGMVCHGIGERRGFEPQ 296 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVYKVDEFSL 311 Q + G P ++ VR +T G+ Y + R T+ PY+IDG+V KVD+ +L Sbjct: 297 AQSHAYDALAAWGLPTSDQVRVVSTLKGVEGYIENAGARRHTIVPYEIDGVVVKVDDVAL 356 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I+ K+ ++ + +LL+I + +GRTG +TP A +EP + G+ + NA Sbjct: 357 QRRLGSTSRAPRWAIAFKYPPEEVNAKLLEIRVNVGRTGRVTPYAVMEPTKVAGSTVENA 416 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN ++ D GD V++++AG+VIP+++ ++ R QP+ P Sbjct: 417 TLHNFYEVERKDVRPGGPGD-----PGDTVILRKAGDVIPEILGPVLALRPEGLQPWVPP 471 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C + +V + + RC C Q ER+ SR+AF+IEGLG + Sbjct: 472 TTCPSCGTPLV-----EQKEGDKDRRCPNHEKCPGQLRERVFFVASRNAFDIEGLGYEAA 526 Query: 492 DFFFKSEDPA--FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +E A + L+ T K + + L D+++K + + Sbjct: 527 VALLDAEVIANEGDVFDLDAAALLRAPLFTRAPKKDEDGPQLSANGQRLLDNLDKAKQVP 586 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R + +L IRHVG + R+LA + S L VG IA Sbjct: 587 LWRVLVALSIRHVGPKAGRALATEFGSMAAIRAATE----------EQLAAAEGVGPTIA 636 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +A++E+++ P ++ V+ + +++ + +V TG+L R A+E Sbjct: 637 EAVIEWFKEPWHVEIVDKWERAGVTMADERDESTPRTLAGLTVVVTGSLVDFSRDSAKEA 696 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + G + +S+KTD ++VG+N GSK +KA+QLGV +++E F LL Sbjct: 697 ILSRGGKAAGSVSKKTDYVVVGENAGSKADKAEQLGVPVLDEAGFKTLLD 746 >gi|256785054|ref|ZP_05523485.1| NAD-dependent DNA ligase LigA [Streptomyces lividans TK24] gi|289768947|ref|ZP_06528325.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24] gi|289699146|gb|EFD66575.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24] Length = 735 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 221/737 (29%), Positives = 352/737 (47%), Gaps = 62/737 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +AR+ + L ++I H YY P++ D+E+D L R + + P+L P Sbjct: 17 PAEARERHAQLAEQIEEHRFRYYVNDAPVVSDAEFDRLLRTLEELEERHPEL---RTPES 73 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+ G V H LSL+ +N ++L + RI R + F E K Sbjct: 74 PTQKVAGAYATEFTAVQHPTRMLSLDNTFNDDELAAWFERIARELGE---QEYHFLCELK 130 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG + + YE+G+ V AA RGDG +GED++ +R I IP L+ + P+++E+RGEVY Sbjct: 131 VDGLAVNLTYERGRLVRAATRGDGRTGEDITPNVRTIAEIPDRLAGDKVPDLVEIRGEVY 190 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 F LN + G KP+AN RNAA+G LR+ +P +R L+ VHG+G Sbjct: 191 FPMEKFQELNARLNEAGDKPFANARNAAAGSLRQKDPRVTASRPLHMVVHGIGTLEGYSG 250 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + ++ G P + R + G+ + R ++ ++IDG+V KVDE Sbjct: 251 LTRLSQAYDLLKAWGLPTSPHNRVVDGLDGVREFIAYYGENRHSVAHEIDGVVVKVDEIR 310 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG AR+PRW I++K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ + Sbjct: 311 LQGRLGSTARAPRWAIAYKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVAGSEVEF 370 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN++ +K + + +GD V++++AG+VIP+++ + + R + F Sbjct: 371 ATLHNQEVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVM 419 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK-- 488 P+ CP C + + + RC AC AQ ER+ + R+ +IE G Sbjct: 420 PAECPECGTPLKAM-----KEGDIDLRCPNARACPAQLRERVAYLAGRECLDIEHFGGVV 474 Query: 489 ----------------QQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTSTTK-----IE 525 + D F + + I+ L +R + + Sbjct: 475 AAALTGPLEPSEPPLVDEGDLFDLTVEKLLPIKAYVLDPDSGLPKRDPKTGEEKIATVFA 534 Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 N G + L I + + L RFI L IR+VG A++LA+ + S Q Sbjct: 535 NKEGEPKKNTLALLQHIEEAKTRPLARFINGLSIRYVGPVAAQALAREFRSIDRIEQATE 594 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNV 643 L VG IA A+ E++ + V P R E Sbjct: 595 ----------EELASTDGVGGTIATAVKEWFAVDWHREIVRKWKAAGVPLEDRSTGEDEG 644 Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 +E +V TGTL+ R A+E + GA V+ +S+KT ++VGDNPGSK +KA Q Sbjct: 645 PRPLEGLTVVVTGTLENFTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQ 704 Query: 704 LGVKIMNEEQFLFLLQQ 720 L V ++NE+ F LL+Q Sbjct: 705 LKVPVLNEDGFAVLLEQ 721 >gi|302336117|ref|YP_003801324.1| DNA ligase, NAD-dependent [Olsenella uli DSM 7084] gi|301319957|gb|ADK68444.1| DNA ligase, NAD-dependent [Olsenella uli DSM 7084] Length = 747 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 224/728 (30%), Positives = 341/728 (46%), Gaps = 59/728 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L + +S YY P + D+E+D L A+ A P+L P +I Sbjct: 46 ARAAELNRILSRAAYAYYALDDPEMTDAEFDRLLVELQALESAHPELV---SPESYTQRI 102 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG ++ V H+ S++ ++++L +++ R + + +T E KIDG Sbjct: 103 GGYVSDQFEPVRHAQRMYSIDDAMSLDELDEWLARTDGALGATAERPVAYTCELKIDGLG 162 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---------IEVRG 189 I + Y G V AA RGDG +GE+V+A I IPR L+ IEVRG Sbjct: 163 IALTYRDGTLVRAATRGDGTTGENVTANALTIKDIPRALASAGMGRIAGGGFGVSIEVRG 222 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EVY+ K+ F+ LN++ A GR+P+ANPRNAA+G LR+ + + R L F++ + S Sbjct: 223 EVYMPKHSFVRLNEQNDAAGRQPFANPRNAAAGSLRQKDSSVTKARDLETFIYAVADESP 282 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + Q++ L ++ GF VN R+ + + + + + R L YDIDG+V KVD Sbjct: 283 LAIDTQHDFLSWLKDCGFSVNPHARRVESSREVRRFCVDALAYRGELDYDIDGVVVKVDS 342 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+ Q LG AR+PRW ++ KF ++ T L I +Q+GRTG+LTPVA +PV + G+ I Sbjct: 343 FAGQAALGFTARAPRWSMAFKFPPEERRTVLRQIRVQVGRTGVLTPVAEFDPVVVAGSTI 402 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP- 427 ATLHN D ++ +D+R GD ++V +AG+VIP+VV + Sbjct: 403 ARATLHNIDEVRR-----------KDVREGDTIVVHKAGDVIPEVVGPVTEGPLAAEHEA 451 Query: 428 ---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + P CP C S VVR+ A RC + C AQ ERL H+ SR+A +I+ Sbjct: 452 RPLWDMPETCPSCGSPVVREEGE------VAWRCVS-IDCPAQASERLIHWGSRNAMDID 504 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQ----------RRQQTSTTKIENILGFGDVS 534 GLG + + + + D + + + + G Sbjct: 505 GLGDEIVGRMVEQGILTD-VADYYDRLDVDTLAAVDTGRVYETAGKGHEEGDGIVVGPTI 563 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + + + L R +F LGIRHVGA +A LA + S Q A Sbjct: 564 AGKIMGQVEASKRAGLGRVLFGLGIRHVGASVANLLADRFGSMQALAAATE--------- 614 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKK 651 + +V +G IAQ++ F+ N+ VE L ++ Sbjct: 615 -EDMAQVDGIGPKIAQSVRGFFSVEGNVAVVERLRAAGVSLEQEGFGEGPKRPQTLDGLT 673 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 V TGTL+K R A + LGA VS +S+KT ++ G GSKL KAQ LGV +++E Sbjct: 674 FVLTGTLEKYSRGDAGSRLKALGAKVSGSVSKKTSFVVAGAAAGSKLAKAQALGVTVLDE 733 Query: 712 EQFLFLLQ 719 +L Sbjct: 734 TALDHILA 741 >gi|28377923|ref|NP_784815.1| DNA ligase (NAD+) [Lactobacillus plantarum WCFS1] gi|81631729|sp|Q88XQ0|DNLJ_LACPL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|28270757|emb|CAD63662.1| DNA ligase (NAD+) [Lactobacillus plantarum WCFS1] Length = 679 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 229/714 (32%), Positives = 374/714 (52%), Gaps = 53/714 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +++EQA E ++L Q ++ YY P + DS YD R + FP L Sbjct: 5 PNTMTVEQAADEAAALRQTLNEWRRQYYDEDAPNVEDSVYDQKYERLVELEQTFPQLV-- 62 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ P +GG + KVTH IP LSL +++ +L++F+ R ++ + + + Sbjct: 63 -TPDSPTQLVGGTVKAGFDKVTHEIPMLSLGDVFSQAELQEFVDR----LEQNVGHPVDY 117 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 E KIDG +++RYE G V + RG+G GED++A I+ I +IP L P I+VR Sbjct: 118 NCELKIDGLALSLRYEDGVLVQGSTRGNGTVGEDITANIKTIKSIP--QRLTRPLTIDVR 175 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247 GE Y+ K F ALN+ A G +ANPRNAA+G LR+L+ R L+ F++ + Sbjct: 176 GECYMPKAAFAALNERREAAGEPVFANPRNAAAGTLRQLDSRVVAERQLSTFMYNIADYE 235 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + A+ Q +ML + LGF +N + A++ + SY + ++ R L Y IDG+V K + Sbjct: 236 PLTARTQSDMLTEFADLGFAINPDFKVAHSMADVFSYIDHYQNERPELAYGIDGIVIKAN 295 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQ+ LG + PRW I+ KF + T L D++ +GRTG++TP A +EPV + G Sbjct: 296 PLPLQRSLGATVKVPRWAIAFKFPPDEQPTLLKDVEWTVGRTGVVTPTAVMEPVQLAGTT 355 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + A+LHN DY+ +D+R+GD VL+ +AG++IP++ + + +R DAQP Sbjct: 356 VARASLHNPDYV-----------AAKDVRIGDTVLLHKAGDIIPEISSVDLAKRPKDAQP 404 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P+ CP C + +V + A RC C AQ E L HF SR+A NI+GLG Sbjct: 405 LVIPTTCPSCGAPLVHLEDE------VALRCINPK-CPAQVQEGLVHFASRNAMNIDGLG 457 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + + + + + A ++ L + Q + + D S L +I++ R+ Sbjct: 458 PRIIAQLYANR----LVSDVAGLYRLTKAQLLT------LDKIKDKSAEKLLTAIDRSRD 507 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SLER +F LGIRHVGA++AR +A+++ + + + + +GD+ Sbjct: 508 NSLERLLFGLGIRHVGAKVARLIAQHFGTIEALMAASQ----------EEIAAIDSMGDV 557 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQ 662 IA A+V+++++ + L + + ++ +S K++V TG L+ Sbjct: 558 IANAVVQYFESDEVHTLIRELQAVNVNTTYQGPSATVAEDSNSWFAGKRVVLTGKLESFT 617 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 R A +++ GA V +S+KTD++I G + GSKL+KAQQL + + +E +F Sbjct: 618 RPDATQWLQAHGATVMGSVSKKTDLVIAGSDAGSKLQKAQQLDITVWDEARFSE 671 >gi|160945211|ref|ZP_02092437.1| hypothetical protein FAEPRAM212_02730 [Faecalibacterium prausnitzii M21/2] gi|158442942|gb|EDP19947.1| hypothetical protein FAEPRAM212_02730 [Faecalibacterium prausnitzii M21/2] Length = 671 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 224/713 (31%), Positives = 356/713 (49%), Gaps = 51/713 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +E L +EQA+K + L I ++ YY P + D EYDAL R + FP L + Sbjct: 1 MEYLELEQAKKRVKELRAIIEKNNRLYYDQDAPELEDFEYDALTRELKELEAQFPQLVTA 60 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P K+GG + L KVTH++ SL ++ ++LR F R+ + Sbjct: 61 A---SPTQKVGGTASSKLPKVTHAVKMESLLDAFSFDELRDFDRRVRE-----AGVEPEY 112 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG ++ YE G+ V A+ RGDG GEDV+A +RAI +IP+ L PE +EVR Sbjct: 113 VVEIKIDGLSCSLEYENGQLVRASTRGDGVVGEDVTANVRAIRSIPKTLKDA-PEFLEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTS 247 GEVY+ F L E G P+ NPRNAA+G LR+ + L+ FV + + Sbjct: 172 GEVYMPHGAFQHLCAEQELQGAAPFKNPRNAAAGSLRQKDARITGSRGLSIFVFNVQQIR 231 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E L ++ LG PV+ + ++ + RS L +D+DG V KV+ Sbjct: 232 GKTLTKHSESLDYLKSLGLPVSPRYHVVHDIEDAIAEIENIGQNRSKLDFDMDGAVIKVN 291 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +F+ ++ +G + PRW I+ K+ + T L I++ +GRTG+LTP A +PV + G Sbjct: 292 DFAQRELMGSTNKFPRWAIAFKYPPEVKETTLRSIEVAVGRTGVLTPTACFDPVFLAGTT 351 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATLHNED+I+ + +GD + V++AG++IP+V+ + + A+P Sbjct: 352 VARATLHNEDFIRQF-----------GLCIGDTIQVRKAGDIIPEVIGVTHHA--EGAEP 398 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 ++ P+ CP C + VV + AA RC + + HF SRDA +IEGLG Sbjct: 399 YTMPTVCPSCGAPVVHLEDE------AALRCVNPECPAQAL-RNIIHFASRDAMDIEGLG 451 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + + E + ADI+TL R Q + F + S NL +I + Sbjct: 452 EAVATQLVEKE----LVHSAADIYTLTREQL------LELDKFKEKSADNLLQAITASKQ 501 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L++ +F GIR++G + A LA+++ + Q + + ++ G + Sbjct: 502 NNLDKLLFGFGIRNIGDKAAALLAEHFGTLQAIREAT----------AEQVSQIDGFGGV 551 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +AQ++VEF+ V L + E ++ K LV TGTL+ + R++A+ Sbjct: 552 MAQSVVEFFAKEGTTDLVHRLADAGVNMQWKGEPKGD-KLAGKTLVVTGTLETLSRNEAE 610 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + G S +S+KT ++ G GSKL KAQ LGV ++ E++FL +LQ Sbjct: 611 ALIVKNGGKASGSVSKKTAYVVAGAAAGSKLTKAQALGVPVLTEQEFLAMLQD 663 >gi|170016835|ref|YP_001727754.1| DNA ligase, NAD-dependent [Leuconostoc citreum KM20] gi|254781358|sp|B1MXQ8|DNLJ_LEUCK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169803692|gb|ACA82310.1| DNA ligase, NAD-dependent [Leuconostoc citreum KM20] Length = 681 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 242/725 (33%), Positives = 384/725 (52%), Gaps = 51/725 (7%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 + P+ L+ + A++E+++L++ ++ + YY+ P++ D YDA R + FP Sbjct: 3 PEFTPVNNLTTQMAQQEIATLQKRLTDYGVAYYEEDAPLVEDYIYDAFYARLVLLEAQFP 62 Query: 64 DLARSEDPNGPLNKIGG-EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P+ P +GG ++ L KV H P LSL ++++E+L+++ R + + Sbjct: 63 QFV---TPDSPTQNVGGAKVKSGLAKVVHPAPMLSLGDVFSLEELQEWDERTTKTLGFQS 119 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 + LE KIDG + + Y GK V A+ RG+G GEDV+A ++ I +IP+ L+ I Sbjct: 120 ----EYNLELKIDGLAVALTYVDGKLVQASTRGNGSIGEDVTANVKTIRSIPQTLTEPI- 174 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 IEVRGE+Y+ K+ F LN + A G +P+ANPRNAA+G LR+LN R L+ FV+ Sbjct: 175 -TIEVRGEIYMPKSSFATLNKQREADGLEPFANPRNAAAGSLRQLNVAITKKRELSAFVY 233 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 I Q L++ LG P ++ R T I +Y E S R L Y IDG Sbjct: 234 YTADPDAIGVTTQSGALERFAALGLPTDDHNRVIATMADIDAYIAEYTSQRERLAYGIDG 293 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V KV++ Q LG + PRW I++KF ++A T + DI+ +GRTG +TP A ++PV Sbjct: 294 VVVKVNQLDNQLDLGHTVKIPRWAIAYKFPPEEALTVVRDIEWTVGRTGAVTPTAVMDPV 353 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G + A+LHN DY+ +DIR+GD V + +AG++IP++ +++ ER Sbjct: 354 QLAGTTVQRASLHNPDYL-----------NAKDIRIGDTVTLHKAGDIIPEIGQVLLAER 402 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 + Q + P+FCP C S +V A RC C AQ E+L HF SR+A Sbjct: 403 PANNQVYDIPTFCPACHSELVHLDGE------VALRCINPF-CVAQIQEKLTHFASRNAM 455 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 NI+G+G + + K A I+ A I+ LQ Q S + F + SVTNL + Sbjct: 456 NIDGMGPRVVSQLLK----ANYIQDVASIYRLQETQLLS------LDKFKEKSVTNLLSA 505 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I ++ SLER +F LGIR VGA+ AR +A+ + + Q A + + + Sbjct: 506 ITTSKSNSLERLLFGLGIRMVGAKAARLIAEKFKTLQAIADA----------SVIDIASI 555 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQ 659 +G+ IA ++V++++ P + L + + V S KK+V TG L+ Sbjct: 556 AGIGETIALSVVQYFKTPEAKQLLIELQEAGVNQTYLSDVIVDETSFFYGKKIVLTGKLE 615 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 K R +A +++ GA V+ +S KTD++I G++ GSKL+KA LGV + +E+ F+ Sbjct: 616 KGSRTEATKWLQDHGAQVTGSVSAKTDLLIAGEDAGSKLDKANALGVTVWDEQAFIEAQA 675 Query: 720 QYNTT 724 + T Sbjct: 676 KEGTD 680 >gi|15674800|ref|NP_268974.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes M1 GAS] gi|71910386|ref|YP_281936.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS5005] gi|81533831|sp|Q9A0J5|DNLJ_STRP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|13621930|gb|AAK33695.1| putative DNA ligase [Streptococcus pyogenes M1 GAS] gi|71853168|gb|AAZ51191.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS5005] Length = 652 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 211/701 (30%), Positives = 352/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L ++ + YY P + DS+YD L R + ++P+ + P + Sbjct: 2 KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQ---DSPTQQ 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + + E KIDG Sbjct: 59 VGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVK-----AEFPNATYLAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G A RGDG+ GE+++ I+ I IP LS + I VRGE Y+S+ Sbjct: 114 SISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPYQLSEPL--TITVRGEAYMSRQS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N+ G +ANPRNAA+G LR+L+ + + + S Q E+ Sbjct: 172 FKAINEARQENGETEFANPRNAAAGTLRQLDTSVV-AKRQLATFLYQEASPTARNQQNEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ LGF VN + ++ I + +++ R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+++++++R+ P CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +V + A RC L C + L+HF SRDA NI GLG ++ F Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + ADI+ L + + G + S L +I ++ S E+ +F L Sbjct: 450 --LAGFVHDVADIYQLTKEDFM------QLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRH+G++++R + + Y + R+ +G IAQ++ ++++ Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKE----------EEIARIDGLGSTIAQSLTQYFE 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 V+ L + N + + +V TG L ++ R++A++ + LGA Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTD++I G + GSKLEKA+ LG++I +E+ L Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRQL 652 >gi|158312936|ref|YP_001505444.1| DNA ligase, NAD-dependent [Frankia sp. EAN1pec] gi|254781334|sp|A8L538|DNLJ_FRASN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|158108341|gb|ABW10538.1| DNA ligase, NAD-dependent [Frankia sp. EAN1pec] Length = 703 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 220/712 (30%), Positives = 345/712 (48%), Gaps = 48/712 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R + L +E+ H YY KP + D+EYDAL R +AI P+L P+ P K Sbjct: 27 RGRAAELARELEEHAYRYYVLDKPTVADAEYDALMRELEAIEERHPEL---RTPDSPTQK 83 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 + G + V H LSL+ ++ E+ + R R + + E KIDG Sbjct: 84 VAGSYSTLFTPVEHLERLLSLDNVFTDEEFHAWAARAAR-----EQPVTAWLCELKIDGL 138 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKN 196 + + YE G+ V AA RGDG +GED++ +R + ++P L +PE++EVRGEV+ Sbjct: 139 AVDLVYEGGRLVRAATRGDGRTGEDITPNVRTLASVPSRLRGPAVPELLEVRGEVFFPTE 198 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255 F LN ++ G+ P+ANPRNAA+G LR+ +P +R L+ VHGLG Q Sbjct: 199 RFTELNAALVEAGKAPFANPRNAAAGSLRQKDPRVTASRPLDMIVHGLGAHQGFDVASQS 258 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 ++ LG PV+ + ++++ R + ++IDG+V KVD+F Q++L Sbjct: 259 GAYARLAELGLPVSARHEVLASVEDVLAFVRRWGEHRHDVEHEIDGVVVKVDDFGQQRRL 318 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +++PRW ++ K+ ++ +TRL DI + +GRTG +TP LEPV + G+ + ATLHN Sbjct: 319 GATSKAPRWAVAFKYPPEEVTTRLRDIQVNVGRTGRVTPFGVLEPVKVAGSTVAMATLHN 378 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D + G + + +GD V++++AG+VIP++V +V+ R + F P+ CP Sbjct: 379 IDEV-----------GRKGVLIGDTVVLRKAGDVIPEIVSPVVDLRDGSERAFVMPTHCP 427 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C +++VR RC ++C AQ E + H SR A +I+GLG + Sbjct: 428 ECGTQLVRPEGE------VDIRCPNTVSCPAQLRESVFHLASRGALDIDGLGYETATVLL 481 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 I D+F L E + GF D + + + R+ L R + Sbjct: 482 AE----GRIHDIGDVFHLAPE------SFEGLRGFADKKIEQILRGLEAARDRPLWRLLV 531 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 L IRHVG AR LA+ S A L V VG IA A+V++ Sbjct: 532 GLSIRHVGPTAARGLARELRSLDAIATAP----------AERLAAVDGVGPKIADAVVDW 581 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + +PR+ V + ++ +V TGTL R A E V G Sbjct: 582 FADPRHRDIVARIASGGVRLADEGAGEGPGPLDGVVVVITGTLDGWSRDTATEAVQSRGG 641 Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 V+ +S+KT ++ G +PG SK +KA+ L + +++E F LL+ R Sbjct: 642 KVTGSVSKKTTFVVAGADPGASKYDKARTLKIPLLDEAGFAVLLRDGADAAR 693 >gi|322376748|ref|ZP_08051241.1| DNA ligase, NAD-dependent [Streptococcus sp. M334] gi|321282555|gb|EFX59562.1| DNA ligase, NAD-dependent [Streptococcus sp. M334] Length = 652 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 212/700 (30%), Positives = 356/700 (50%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K ++ L ++ + YY P + DSEYD L R + A+PD + + P +++ Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPDQVLA---DSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 60 GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKEVAHP-----TYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YEKG V A RGDG GE+++ ++ + IP L + I VRGE Y+ ++ F Sbjct: 115 ISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRSSF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q ++L Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKVL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN A I + E+ R LPYDIDG+V KV++ + Q++LG Sbjct: 232 KHLEQLGFVVNPKRILAENIDEIWDFIQEVGQERDNLPYDIDGVVIKVNDLASQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRISEEKL-DIPTNCPSCD 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S ++ + A RC C AQ +E L HF SRDA NI GLG ++ F + Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFATN 452 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 ++ ADI+ L+ + G + S LY +I + S E+ +F LG Sbjct: 453 ----LVKDVADIYRLKEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG++ ++ L +++ S +N AQ D + + +G +IA+++ ++ Sbjct: 503 IRHVGSKASQLLLQHFHSIENLAQA----------DPEEVASIESLGGVIAKSLQTYFAT 552 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + + L + + + + +V TG L++++R +A+ + LGA V Sbjct: 553 EGSEILLRELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KTD+++ G + GSKL+KAQ+LG+++ +E L Sbjct: 613 TGSVSKKTDLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652 >gi|333030674|ref|ZP_08458735.1| DNA ligase [Bacteroides coprosuis DSM 18011] gi|332741271|gb|EGJ71753.1| DNA ligase [Bacteroides coprosuis DSM 18011] Length = 667 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 216/707 (30%), Positives = 354/707 (50%), Gaps = 48/707 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A+ + L + + + YY ++P I D E+D L + + P +DPN P + Sbjct: 3 AKDRIDELRKYLHQQNYKYYILNQPEISDKEFDDLLKELQDLEKKNPQY---DDPNSPTH 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +IG +++ + H P LSL ++ ++ +F R+ + E K DG Sbjct: 60 RIGSDIDKRFTQKEHKYPMLSLANTYSETEVAEFYERVKKALG---SQPFELCCELKFDG 116 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195 T I++ Y+ GK V A RGDG G+ V+ ++ I TIP VL+ N P+ E+RGE+ + Sbjct: 117 TSISLTYQHGKLVEAVTRGDGTRGDMVTDNVKTIRTIPLVLNGDNYPDEFEIRGEILMPW 176 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 F LN E A +ANPRNAASG L+ N + + + G Y Sbjct: 177 VVFEELNAEKEAREEPLFANPRNAASGTLKLQNSSVVASRKLDAYLYYLLGENLPYDGHY 236 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L++ GF +++ +R+ T + + + R LP DG+V KV+ + Q+ L Sbjct: 237 ENLEEASKWGFKISSEMRKCKTLQEVYDFIRYWDTARKDLPVATDGIVIKVNSIAQQEGL 296 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL ++ Q+GRTG +TPVA L+ V + G ++ A+LHN Sbjct: 297 GYTAKSPRWAIAYKFQAEEARTRLNEVTYQVGRTGAITPVANLDAVQLSGTVVRRASLHN 356 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFC 434 ED I+GL D+ +GD V V++ GE+IPK+ + + R F C Sbjct: 357 EDIIRGL-----------DLHIGDMVYVEKGGEIIPKITAVDTDARDEHLGPKVEFIKKC 405 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + +VR AAH C C Q R+ HF+SR A NI+GLG + +D F Sbjct: 406 PECGTDLVRYEGE------AAHYCPNETGCPTQIKGRIVHFISRRAMNIDGLGPETVDLF 459 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 ++ + AD++ L + Q + GD S N+ I + + + R + Sbjct: 460 YRE----GLLHNAADLYQLTKEQILG------LERMGDTSANNIIKGIEESKKVPFARAL 509 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG +A+ LAK + + + A+ LI + +G+ IA++I+ Sbjct: 510 FALGIRFVGETVAKKLAKAFKNIGDLAKASQ----------EELISIDEIGEKIAESIIN 559 Query: 615 FYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 ++ N V+ L++ N ++++E +V +G + R++ + + Q Sbjct: 560 YFSKEENRIMVQQLVEYGVQLHQNEEEVANQTNKLEGAAIVISGVFKIHSRNEYKALIEQ 619 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G +S KTD ++ G+N G +KLEKA++LG+KI++EE+FL L+ Sbjct: 620 NGGRNVGSISSKTDYVLAGENMGPAKLEKAEKLGIKIISEEEFLLLI 666 >gi|289704853|ref|ZP_06501270.1| DNA ligase (NAD(+)) [Micrococcus luteus SK58] gi|289558349|gb|EFD51623.1| DNA ligase (NAD(+)) [Micrococcus luteus SK58] Length = 797 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 226/799 (28%), Positives = 353/799 (44%), Gaps = 99/799 (12%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + + R E L + + YYQ P I D+EYDAL RR + + P+L Sbjct: 11 PDPQDIPAADLRAEYEDLVERVRAARTAYYQRDAPEISDAEYDALYRRLEDLEALHPELV 70 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK-KDDNS 125 + P ++GGE++ + V H SLE +++IE+L + R + + + + Sbjct: 71 ---SNDSPTQEVGGEVSEAFAPVRHGARMYSLEDVFSIEELEVWFRRAAQALTQVRPGVA 127 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184 + +E KIDG + +RY G+ V AA RGDG +GEDV+A +R I IP LS P Sbjct: 128 PRWLVEVKIDGLAVALRYRDGRLVQAATRGDGVTGEDVTANVRTIGDIPHELSGEGWPAE 187 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 EVRGEV++S F LN G+ P+ANPRNAA+G LR+ +P R L FVHG+ Sbjct: 188 FEVRGEVFMSSAAFAELNARRAEEGQTPFANPRNAAAGALRQKDPAVTAQRPLAMFVHGI 247 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI-----VSYYNEMKSIRSTLPYD 298 G + Q+E+ + G PV+ R+ V+ E R L ++ Sbjct: 248 GSVEAFGLESQHEVYDALAGWGLPVSPYTRRVEGADEEALAAVVAVIEEYGRRRHELIHE 307 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+V K D F+ Q+ LG +R PRW +++K+ ++ T L DI + +GRTG +TP A + Sbjct: 308 IDGIVLKADAFADQRYLGHTSRVPRWAVAYKYPPEEVHTLLRDIAVSVGRTGRVTPFAVM 367 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV + G+ ++ ATLHN+D +K + + +GD V+V++AG+VIP+VV ++ Sbjct: 368 EPVTVAGSTVSLATLHNQDVVK-----------AKGVLIGDTVVVRKAGDVIPEVVGPVL 416 Query: 419 NERHP------DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472 R + + F P+ CP C + + + RC +C AQ R+ Sbjct: 417 PLREKAIEAGRELREFVMPTHCPSCGTPLA-----PAKEGDVDLRCPNARSCPAQLAGRV 471 Query: 473 KHFVSRDAFNIEGLGKQQLDFFFK-------------SEDPAFSIRIPADIFTLQRRQQT 519 +H SR AF++E LG++ + + + I A IF L Sbjct: 472 EHLASRGAFDVEALGEEAARWLVQGPGEDPAEHEGQVRPEGPGPITAEAQIFDLASGTPE 531 Query: 520 STTKIENILG------------FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG---- 563 T G T + + +L+ + F+ G Sbjct: 532 EITGPRGEDGLTDLQRSLGEVRVWREGRTKVDGRMVPSGVFTLKPYFFTAGTAKRPSAPT 591 Query: 564 -------------------------------AEIARSLAKYYLSYQNFAQEINNIIAHNN 592 ARSLA + S A Sbjct: 592 ANTLRLFDELEKAKSQPLWRTLVALSIRHVGPTAARSLATAFGSMA------ALRAAAEA 645 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652 D L + VG IIA A++E++ + V+ +++ +E + Sbjct: 646 GDRDRLAEIDGVGPIIADALIEWFAEDWHREIVDRWAAAGVVMEDEQDESTPRTLEGLTV 705 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TG+L+ R A+E + G S +S+KTD ++ G+ GSKL+KAQ LGV +++E Sbjct: 706 VVTGSLEGFSRDSAKEAILVRGGKASGSVSKKTDFLVAGEAAGSKLDKAQSLGVPVLDEA 765 Query: 713 QFLFLLQQYNTTLRIHDDD 731 F LL +R D D Sbjct: 766 GFTALLAGGADAVRPADTD 784 >gi|189499438|ref|YP_001958908.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides BS1] gi|254781285|sp|B3EM49|DNLJ_CHLPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|189494879|gb|ACE03427.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides BS1] Length = 684 Score = 502 bits (1292), Expect = e-139, Method: Composition-based stats. Identities = 225/725 (31%), Positives = 365/725 (50%), Gaps = 54/725 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + +QA E+ L +EI H+ YY ++P I D +YDA+ + A+ FP+L S Sbjct: 1 MDKKQAVAEIIRLREEIDRHNYRYYVLARPEISDFQYDAMLEKLVALEGEFPELKTS--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + V H P LSL ++IE++ +F R+ + ++ +S F E Sbjct: 58 DSPSQRVGGGITKEFPTVEHREPMLSLSNTYSIEEVGEFYHRVVKLLPEEHRDSPEFVAE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----------NI 181 K DG +++ Y G V A RGDG G+D++ IR I ++P L Sbjct: 118 LKFDGVAVSLLYRDGLLVRGATRGDGSQGDDITGNIRTIRSVPLRLGNPSGSGEGVERYE 177 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVH 241 IEVRGEV+++K DF LN+ + +ANPRNA +G L+ + +++R FV Sbjct: 178 GREIEVRGEVFMTKTDFAVLNEGRPE--EERFANPRNATAGTLKLQDSGEVSRRKMVFVA 235 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYN-EMKSIRSTLPYDID 300 K S E L+ + LGF R T I Y + K + LPY+ID Sbjct: 236 YYLKESSAEIISHAERLELLERLGFYTGGEHRVCRTLKDIREYIDGWQKKRLTGLPYEID 295 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V K++ +L+ +LG ++SPRW I++KF ++A T + I Q+GR G +TPVA LEP Sbjct: 296 GIVLKLNNTALRDELGATSKSPRWAIAYKFPAERARTVIRSIVFQVGRLGTITPVAELEP 355 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V + G ++ +TLHN + ++ L D+R+ D V+++++GE+IPKV+ ++ + Sbjct: 356 VRLAGTTVSRSTLHNLEEVERL-----------DVRLHDTVVIEKSGEIIPKVISVVEEK 404 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R P P P CP C + +V+ N + C C AQ R++HF SR+A Sbjct: 405 RRPGTLPVVVPESCPSCGTPLVKPPNE------VHYYCPNSEGCPAQTKARIEHFASRNA 458 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +I GLGK ++ S + D++ L + + S NL + Sbjct: 459 MDINGLGKAIVEQLVSS----GMVVDAGDLYRLTPDLIM------RLDRQAEKSAGNLVN 508 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 +I K RN R +F+LGIRHVG AR LA Y + + +L Sbjct: 509 AIAKSRNREYFRVLFALGIRHVGIATARELAGAYPTLDMLCKA----------SVEALSD 558 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQ 659 V VG +IA+++ F++ P +E L + + +K V+ + K++FTG L+ Sbjct: 559 VTDVGPVIAESVHAFFRKPSATAMIEKLREAGVRLEAEKTKKPVNLNFDGMKVIFTGALE 618 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R +A V + G A +S+ T++++ G PGSKLEKA++LGV+++ E +F +L Sbjct: 619 RYTRDEAAGLVRERGGKTVASVSKNTNLVVYGKEPGSKLEKARKLGVRVITESEFEEMLG 678 Query: 720 QYNTT 724 + + Sbjct: 679 EVGSN 683 >gi|284166901|ref|YP_003405180.1| DNA ligase, NAD-dependent [Haloterrigena turkmenica DSM 5511] gi|284016556|gb|ADB62507.1| DNA ligase, NAD-dependent [Haloterrigena turkmenica DSM 5511] Length = 692 Score = 502 bits (1292), Expect = e-139, Method: Composition-based stats. Identities = 239/722 (33%), Positives = 368/722 (50%), Gaps = 50/722 (6%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 P+ LS ++AR+++ L + I HD YY S P+I D YDAL R + AF Sbjct: 20 FAPVGELSEDEAREQVELLREAIREHDRRYYVESDPVIADRTYDALFARLRDLEDAF--- 76 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 E P+ P +GGE V H P LS+++ D+R+F R+ R + Sbjct: 77 -GLEHPDSPTRSVGGEPLEEFETVEHVAPMLSIDQSGEEADVREFADRVQR-----EVGD 130 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + + EPK DG + YE G+ AA RGDG G+DV+ R I ++P+ L + PE + Sbjct: 131 VDYVCEPKFDGVSMEFVYEDGRLERAATRGDGREGDDVTRNARTIGSVPQKLHGDYPEFL 190 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245 VRGEVY+ K+ F A N E I G +P+ANPRNA +G +R+L+P+ + Sbjct: 191 AVRGEVYMPKDAFQAHNRERIERGEEPFANPRNATAGTIRQLDPSIVADRPLEVFFFDVL 250 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + L++ G V + V A+ ++Y + M R L Y+IDG V K Sbjct: 251 EASDLEDSHSAELERFPDWGLRVTDHVELADDIDEAIAYRDRMLEARDDLNYEIDGTVIK 310 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ +++LG AR R+ ++KF + T ++D+ +Q+GRTG LTPVA LEPV++GG Sbjct: 311 VDDRESREELGRTARHDRYAFAYKFPARAEVTPIVDVAVQVGRTGRLTPVALLEPVDVGG 370 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ A+LHN D I+ +++ VGD V V+RAG+VIP V +++ Sbjct: 371 VTVSRASLHNPDEIE-----------EKNVNVGDTVRVQRAGDVIPYVEEVVEK---DSE 416 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + P CP+C S V + CTGGLAC AQ ++++ D ++EG Sbjct: 417 GHYDLPDRCPVCDSAV--------ERDGPMAFCTGGLACDAQLRRSIEYYAGDDGLDLEG 468 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG++ + A + AD++ L R + ++ G+G+ S N+ I Sbjct: 469 LGEKSVRQLVD----AGLLESVADLYELDRED------LTDLEGWGETSAENVLAEIEAS 518 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R L F+ +LGI HVG AR LA+ + +++ F + D+ L VP VG Sbjct: 519 REPPLAEFLSALGIPHVGPTTARELAREFGTFEAFREAAE-------DEPERLEDVPDVG 571 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + +A+ + EF+ + N AV+ LL+ VSP E E+E VFTG+L+ + R + Sbjct: 572 ETVAEQLHEFFTSEANAAAVDDLLEHVSPQESDLETGGD-ELEGLTFVFTGSLEGMTRGE 630 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 AQE V GA + +S TD ++VG+NPG +K + A V I++E++F LL Y Sbjct: 631 AQEAVEAHGANATGSVSGNTDYLVVGENPGQTKRDDAAANDVPIIDEDEFRELLAGYGID 690 Query: 725 LR 726 L Sbjct: 691 LE 692 >gi|163757008|ref|ZP_02164114.1| DNA ligase [Kordia algicida OT-1] gi|161323012|gb|EDP94355.1| DNA ligase [Kordia algicida OT-1] Length = 665 Score = 502 bits (1292), Expect = e-139, Method: Composition-based stats. Identities = 210/708 (29%), Positives = 357/708 (50%), Gaps = 46/708 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + +++L++L E+ H+ YY I D E+D + + P+ DPN Sbjct: 1 MRNIQEKLTALRDELREHNYNYYVLDNATISDYEFDMKLKELQELEAKHPEF---HDPNS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG++ + + H SL+ ++ EDL + RI + +++ +T E K Sbjct: 58 PTLRVGGQITKNFNTIAHEYRMYSLDNSYSKEDLLDWEKRIEKILGV---STVEYTCELK 114 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 DG + + YE GK + A RGDG G++V+ I+ I T+P L + P ++RGE+ + Sbjct: 115 YDGASMNLTYENGKLIKAVTRGDGFQGDEVTNNIKTIKTVPLQLKGDYPPKFDIRGEIIL 174 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + F +N+E +A G PY NPRN ASG L+ + +++ + + K + Sbjct: 175 PLDGFKKMNEERVANGEDPYMNPRNTASGSLKLQDSSEVAKRPLECLLYNIKGERLPIAT 234 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q+E L+K R GF V + A I+ + N ++ R L Y+IDG+V KV+ Q+ Sbjct: 235 QFESLEKAREWGFKVPTVAKVAKNVDEILQFVNYWEANRHELKYEIDGVVIKVNNLQYQE 294 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG +++PRW +++KF +Q +T L +I Q+GRTG +TPVA L+PV + G + A+L Sbjct: 295 ELGYTSKAPRWAMAYKFKAEQVATVLNEITYQVGRTGAITPVANLQPVLLAGTTVKRASL 354 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I L DIR D V V++ GE+IPK+V + + R D+ + + Sbjct: 355 HNADQIAKL-----------DIRERDTVFVEKGGEIIPKIVGVNFDLRPEDSTETVYATE 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C + + R A H C C+ Q + R++H++SR A +IEGLG + + Sbjct: 404 CPECHTPLERKEGE------AQHYCPNVAGCTPQIVGRIQHYISRKAMDIEGLGGETVAL 457 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + I AD++ L Q + + S NL + I + I ER Sbjct: 458 LVQE----GLITNYADLYELTTAQVI------PLERMAEKSAENLINGIEASKKIPFERV 507 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +++LGIR+VG +A+ LAK+Y S +N L+ V +G IA+++ Sbjct: 508 LYALGIRYVGETVAKKLAKHYKSIDALMNASSN----------DLVNVDEIGVKIAESVA 557 Query: 614 EFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 +F+ N+ +E L K + ++ + K V +G +K+ R++ ++ + Sbjct: 558 QFFAEDVNLQMIERLKKFGVQLEFSAEQLEGLTETLLGKSFVVSGVFEKVSRNELKKLIE 617 Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G VS+ +S KT ++ GD G SK EKA++L + I+ E++FL ++ Sbjct: 618 NNGGKVSSSISSKTSFVVAGDKMGPSKREKAEKLNIPIITEDEFLNMI 665 >gi|83816597|ref|YP_445022.1| DNA ligase, NAD-dependent [Salinibacter ruber DSM 13855] gi|123739757|sp|Q2S459|DNLJ_SALRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|83757991|gb|ABC46104.1| DNA ligase, NAD-dependent [Salinibacter ruber DSM 13855] Length = 690 Score = 502 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 219/702 (31%), Positives = 367/702 (52%), Gaps = 49/702 (6%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 + +H+ YY P++ D+EYD L ++ + +P L + P+ P +++GG + L Sbjct: 32 LRHHNYRYYVLDAPVVSDAEYDRLFQQLQTLEAEYPVL---QTPDSPTHQVGGPVRDELG 88 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 VTH P LSL+ ++ +++R F ++ ++ + EPK DG + + YE G+ Sbjct: 89 TVTHPAPMLSLKAVYEEDEVRNFAETCREELGRE---TVTYIAEPKFDGLAVELIYEDGR 145 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGEVYISKNDFLALNDE 204 V A RGDG +GE+++A ++ I +P L +P+ + VRGE Y+ K++F A N Sbjct: 146 LVQGATRGDGETGEEITANVKTIKGVPLRLRDDARPVPDRLVVRGEAYMRKDEFNAFNRR 205 Query: 205 MIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263 G+K +ANPRNAA+G LR+L+ R L + + + E+L+ + Sbjct: 206 REEEGKKVFANPRNAAAGSLRQLDSNITARRPLRIYFYEIAPVDGRDFATHAEVLEALPE 265 Query: 264 LGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322 G + +R+ + ++++ + R LPY+IDGLV KV++F + LG R R P Sbjct: 266 WGLRVCEDHIRRCDGIDAALAHHAALVDRRDDLPYEIDGLVIKVNDFDGHETLGVRDRDP 325 Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382 RW ++KF ++A+T + D+ +Q+GRTG +TPVA L PV +GG +T A+LHN++ I Sbjct: 326 RWAAAYKFPPRRATTSIEDLFVQVGRTGRITPVAVLAPVEVGGVEVTRASLHNQNEIDR- 384 Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442 +DIR+GD VL++RAG+VIP+VV +I +ER P+ P CP+C S VV Sbjct: 385 ----------KDIRIGDTVLIERAGDVIPQVVKVIEDERDGTEAPYHIPDACPVCGSEVV 434 Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502 + K CTGG+ C AQ ERLKH+ SR+A +IEGLG ++ + A Sbjct: 435 LSDDKKQA------FCTGGMTCPAQFRERLKHYASREATDIEGLGDKRAEQLID----AG 484 Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 I+ +D++ L++ + + D S NL D I L+RF+++LGI V Sbjct: 485 LIQTISDLYELEKADL------LQLERYADKSAQNLIDEIEASLEQDLDRFLYALGIPLV 538 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 G+ AR LA+++ + D +L + +G +A +I F+ + N Sbjct: 539 GSATARLLAQHFDTLDALVDA----------DEDALTTIDDIGPEVAHSIATFFADDANR 588 Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 ++ + + ++ + +E VFTG+L+ R Q +V Q GA ++ +S Sbjct: 589 GVIDEMRDAGLTLTNPYAEDAAR-LEGLTFVFTGSLEGWTRSAVQRFVEQHGANATSSVS 647 Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 TD ++ G GSK + A G+ +++E+ F LL++ Sbjct: 648 GNTDYVVAGPGAGSKRDDADDRGIPVLDEDAFHALLREQGID 689 >gi|225849186|ref|YP_002729350.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium azorense Az-Fu1] gi|254781434|sp|C1DW63|DNLJ_SULAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|225644062|gb|ACN99112.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium azorense Az-Fu1] Length = 701 Score = 502 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 253/734 (34%), Positives = 401/734 (54%), Gaps = 59/734 (8%) Query: 2 KKRQLI--PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59 K R+ + I+++ ++A + L + I +HD YY ++P+I D EYD L + I Sbjct: 13 KTREFLNLDIKSIDRKKAESIIEDLREVIRFHDWRYYVLAQPVISDYEYDKLFKLLKDIE 72 Query: 60 HAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119 +PDL P+ P ++ E+ +V H P LSL+ +N DLR F R+ Sbjct: 73 SKYPDLI---TPDSPTQRVPSEITKVFPQVKHLTPMLSLDNSYNEADLRDFDRRVRELTG 129 Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179 + I + +EPK DG I++ YEK F A RGDG GED++ ++ I +IP Sbjct: 130 LE---KIEYAVEPKFDGAGISLIYEKDLFKRGATRGDGEVGEDITNNLKVIKSIPLSAKF 186 Query: 180 NIPEI--IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYL 236 + I +E+RGEV I K+ F +N++ + G +ANPRNAA+G +R +P + R L Sbjct: 187 SSYGIDKVEIRGEVLIRKDIFKRINEQRLEEGLPLFANPRNAAAGSIRLQDPKEVAKRGL 246 Query: 237 NFFVHGLGKTSEI-------FAKGQYEMLQKMRCLGFPVNNGV-RQANTFHGIVSYYNEM 288 FV+ + + K + ++ + LGF V + N ++ Y E Sbjct: 247 EAFVYQITYAEKDGKNLLGTVLKKHSDNIKMLHLLGFKTPYEVLKVCNGIDEVIDYCREW 306 Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348 + R PY+IDG+V KV++ SL ++LG + PRW I++KF +QA+T+++D+ Q+GR Sbjct: 307 ERKRDNYPYEIDGMVIKVNDISLYEKLGFTSHHPRWAIAYKFKARQATTKIIDVVFQVGR 366 Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408 TG +TPVA+L+PV IGG ++++ +L NED+I+ +DIR+GD VLV+RAG+ Sbjct: 367 TGAITPVAKLQPVEIGGVIVSSVSLFNEDFIR-----------EKDIRIGDTVLVERAGD 415 Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 VIP VV +I R + +P FP CP C S +V+ L A +RC + C AQ Sbjct: 416 VIPYVVMVIKEARTGNEKPIEFPKNCPSCGSPLVKPLGE------AVYRCIN-INCPAQV 468 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 +ER+ HF S+DA +I+GL + + F+K ++ DI+ L R I+NI Sbjct: 469 IERIIHFASKDAMDIKGLSEATVKKFYK----LGLLKSIPDIYRLDFR------IIKNIQ 518 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 GFG+ SV NL +I + +N L R I+ LGIR+VG A++LA ++ Sbjct: 519 GFGEKSVNNLKQAIEESKNRPLYRLIYGLGIRYVGEVTAKTLASAVNCLEDL-------- 570 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648 N L+++P +GD +A I F+ N +N+ ++ L KE+ ++ ++ ++ Sbjct: 571 --KNFTITDLMKLPDIGDKVATEIYNFFHNEQNLKMIQQL-KELGVNVCNPKEEKRGKLA 627 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVK 707 VFTG L+ R KA+E V LG V +S+K ++VG+ PGSKL+KAQ++ +K Sbjct: 628 GLNFVFTGALKCCSREKAKEIVESLGGNVLDTVSKKVHYLVVGEEPGSKLQKAQKIPTIK 687 Query: 708 IMNEEQFLFLLQQY 721 I+NEE+FL ++ Q Sbjct: 688 IINEEEFLKMIGQQ 701 >gi|314934069|ref|ZP_07841432.1| DNA ligase, NAD-dependent [Staphylococcus caprae C87] gi|313653180|gb|EFS16939.1| DNA ligase, NAD-dependent [Staphylococcus caprae C87] Length = 667 Score = 502 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 241/714 (33%), Positives = 376/714 (52%), Gaps = 53/714 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E + ++ L ++ + YY P + DSEYD L I P+ + + Sbjct: 1 MEDLQSRVNELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIDIEEKHPEYKTA---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N EDLRKF RI K + + E K Sbjct: 58 PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRDNIGK-----VEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++Y+ G+FV RGDG +GED++ +R I IP + + EVRGE Y+ Sbjct: 113 IDGLAVSLKYQNGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLN--FEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + F+ LN E G +P+ANPRNAA+G LR+L+ R L+ F++ + ++ A Sbjct: 171 PRRSFMNLNAEKEENGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTDFDAT 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E LQ + LGF N + G++ Y ++ R +L YDIDG+V KV++ Q Sbjct: 231 TQSEALQGLDDLGFKTNQERERVADIDGVLDYIDKWTEKRESLSYDIDGIVIKVNDLDQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +++G +SPRW I++KF ++ ++LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVVSKLLDIELSIGRTGVVTPTAILEPVRVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V+VK+AG++IP+VV I++ R DA+ + P+ Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVVKKAGDIIPEVVKSILDRRPKDAETYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCDHELVRIEGE------VALRCINPK-CQAQLIEGLIHFVSRQAMNIDGLGTKIIQ 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 +++E I+ ADIF L+ + G V NL +I K ++ SLE Sbjct: 453 QLYENE----LIKDVADIFYLKEEDL------LPLERMGSKKVENLLAAIEKAKDNSLEH 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + L+ + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETMDRLLDVTE----------EELVAIHDIGDKLAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668 V + +N ++ L + + K E K +V TG L+++ R +A + Sbjct: 553 VTYLENEDIRALIQKLKDKNVNMNYKGIKTSEIEGHPEFNGKTIVLTGKLEQMTRSEATQ 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 ++ GA V+ +++ TDI+I G + GSKL KA++ G +I E++F ++ N Sbjct: 613 WLEMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKFGKEIWTEDEFAKKQKESN 666 >gi|46447394|ref|YP_008759.1| NAD-dependent DNA ligase LigA [Candidatus Protochlamydia amoebophila UWE25] gi|81626502|sp|Q6MAB5|DNLJ_PARUW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|46401035|emb|CAF24484.1| probable DNA ligase [Candidatus Protochlamydia amoebophila UWE25] Length = 665 Score = 502 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 236/703 (33%), Positives = 387/703 (55%), Gaps = 46/703 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K+ L EI +H+ YY +PII D E+DAL ++ + I + P+ P + Sbjct: 4 QKDYEKLCHEIWHHNKLYYIEHQPIISDEEFDALLKKLEEIERSHPEWITEF---SPSQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 + + V H P LSL ++ E++ FI R+ + K+ + F++E K+DG Sbjct: 61 VNESLTSGFKTVAHRTPMLSLANTYSKEEIEDFIKRLQKLVGKR---QVEFSVELKMDGI 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKN 196 IT YE+G F RG+G G+D++ +R I +P LS P+ +E+RGEV++ + Sbjct: 118 AITAIYEQGIFKRGITRGNGKRGDDITTNMRMIENLPLQLSGENLPDFLEIRGEVFMPRQ 177 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQY 255 FL LN++ + G +ANPRNAA+G L+ L+P R L +GL + S K Q Sbjct: 178 VFLQLNEQKLQDGEVLWANPRNAAAGSLKLLDPKMVAERRLAVVFYGLAEDSSASIKKQA 237 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E+ R +G P I + E++S+R+ LPYDIDG+V K+++F QK+L Sbjct: 238 EVPSFFRSIGLPALEHHAYCQNIEQIWKFAEEIRSLRTILPYDIDGIVIKLNDFKDQKRL 297 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +SPRW I++KFA +QA TR++DI +QIGRTG+LTPVA LEP+ + G+ I A+L+N Sbjct: 298 GVTGKSPRWAIAYKFAAEQAKTRIIDITVQIGRTGVLTPVAELEPIFLSGSTIARASLYN 357 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 ++ ++ +DIR+GD V +++ G+VIPKV+++ +++R +QP+ P +CP Sbjct: 358 QEEVQR-----------KDIRIGDLVTIEKGGDVIPKVLNVELSQRPLHSQPWQMPLYCP 406 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C ++V+ + A RC +C+ QQ+ +L +FV + A +I+ +G++ + F Sbjct: 407 SCGTQVINIIGE------VAVRCPNEDSCTEQQIRKLIYFVGKQAMDIKHMGEKIVIQLF 460 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + I +P+DIF L Q + + F ++ NL SI + +++SLERFI Sbjct: 461 QK----GFIHLPSDIFALTEGQIS------QLTNFKTKAIQNLMRSIEESKHVSLERFIM 510 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +L I+++G A LA + + Q LI++ VG +AQA+VE Sbjct: 511 ALEIKYIGIGTAELLAARAGTIETLMQLNE----------EDLIKIEGVGGKVAQAVVEH 560 Query: 616 YQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 +QNP++ V LL+ P + + + K V TG+L+ R A + + G Sbjct: 561 FQNPKHRQEVYRLLELGVCPQSKTVQIFTNHAFQGKIFVLTGSLEHYTRQSAASLIKERG 620 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 VS +SRKT+ ++ G PGSKL+KA+ LG+ ++NE++F+ L Sbjct: 621 GKVSDSVSRKTNYVVAGAEPGSKLDKARTLGIPVLNEKEFISL 663 >gi|70726048|ref|YP_252962.1| DNA ligase [Staphylococcus haemolyticus JCSC1435] gi|84028902|sp|Q4L7L9|DNLJ_STAHJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|68446772|dbj|BAE04356.1| DNA ligase [Staphylococcus haemolyticus JCSC1435] Length = 667 Score = 502 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 239/712 (33%), Positives = 370/712 (51%), Gaps = 53/712 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 + ++ L ++ + YY P + DSEYD L R I A P+ P+ P Sbjct: 4 IKSRVNELHDLLNQYGYEYYVQDNPSVPDSEYDKLLRELIDIEEAHPEFK---SPDSPTV 60 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GGE+ S KV H P LSL +N ++LR+F RI S+ + E KIDG Sbjct: 61 RVGGEVQSSFEKVNHDTPMLSLGNAFNEQELRRFDQRIREQVG-----SVEYMCELKIDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 ++++Y +G+FV RGDG +GED++ +R I IP ++ + EVRGE Y+ ++ Sbjct: 116 LAVSLKYVEGRFVQGLTRGDGTTGEDITENLRTIHAIPLKINEPLS--FEVRGEAYMPRS 173 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255 F+ LN+E +P+ANPRNAA+G LR+L+P R L+ F++ + ++ A Q Sbjct: 174 SFIRLNEEKEKNEEQPFANPRNAAAGSLRQLDPKLAAKRKLSVFLYSVNDFTDFDATTQS 233 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 L ++ LGF N+ + G++ Y + R L YDIDG+V KV++ Q ++ Sbjct: 234 GALDELDRLGFKTNHERMRVGDIEGVLEYIEKWTKQREQLSYDIDGIVIKVNDIEQQDEM 293 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +SPRW I++KF ++ T L DI++ IGRTG++TP A L+PV + G ++ A+LHN Sbjct: 294 GYTQKSPRWAIAYKFPAEEVVTTLQDIELSIGRTGVVTPTAILDPVRVAGTTVSRASLHN 353 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 ED I RDIR+GD V+VK+AG++IP+VV I R P+S P+ CP Sbjct: 354 EDLIH-----------ERDIRIGDSVVVKKAGDIIPEVVKSITERRPEGTLPYSMPTHCP 402 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C +VR A RC C AQ +E L HFVSR A NI+GLG + + + Sbjct: 403 SCDHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLY 455 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 I ADIF L + G V NL +I + SLE +F Sbjct: 456 HHN----VINDVADIFYLTEDDL------LPLERMGSKKVENLLKAIEDAKANSLEHLLF 505 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIRH+G + ++ LA+ Y + + LI + +GD +AQ++V + Sbjct: 506 GLGIRHLGVKASQVLAEKYETMDRLLEVTE----------EELISIHDIGDKLAQSVVTY 555 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVS---SE-IENKKLVFTGTLQKIQRHKAQEYVT 671 +N +E L + + K +NK +V TG LQ++ R +A ++ Sbjct: 556 LENEDIKALIEKLKYKNVNMVYNGIKTSDIEGHPDFKNKTIVLTGKLQQLTRKEASAWLE 615 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 GA V++ +++KTD++I G++ GSKL KA++ G +I EEQF+ + ++ Sbjct: 616 LQGAKVTSSVTKKTDLVIAGEDAGSKLTKAEKFGTEIWTEEQFVAKQNEISS 667 >gi|46199040|ref|YP_004707.1| NAD-dependent DNA ligase [Thermus thermophilus HB27] gi|81405933|sp|Q72JN8|DNLJ_THET2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|46196664|gb|AAS81080.1| NAD-dependent DNA ligase [Thermus thermophilus HB27] Length = 676 Score = 502 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 237/714 (33%), Positives = 377/714 (52%), Gaps = 55/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++E+ARK ++ L I YH+ YY + P I D+EYD L R + FP+L P Sbjct: 1 MTLEEARKRVNELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPELK---SP 57 Query: 72 NGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G + V H SL+ +N ++L+ F RI R ++ +T+ Sbjct: 58 DSPTEQVGARPLEATFRPVRHPTRMYSLDNAFNFDELKAFEERIERALGRE--GPFAYTV 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K+DG + + YE G VY A RGDG GE+V+ + IPTIPR L PE +EVRGE Sbjct: 116 EHKVDGLSVNLYYEDGVLVYGATRGDGEVGEEVTQNLLTIPTIPRRLKGV-PERLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHGLG--K 245 VY+ FL LN+E+ G + + NPRNAA+G LR+ +P + F+ GLG + Sbjct: 175 VYMPVEAFLRLNEELEERGERIFKNPRNAAAGSLRQKDPRITAKRGLRATFYALGLGLEE 234 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 Q+ +L ++ GFPV +G +A G+ + Y + R LP++ DG+V K Sbjct: 235 VEREGVATQFALLHWLKEKGFPVEHGYARAVGAEGVEAVYQDWLKKRRALPFEADGVVVK 294 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 +DE +L ++LG AR+PR+ I++KF ++ TRLLD+ Q+GRTG +TPV LEPV + G Sbjct: 295 LDELALWRELGYTARAPRFAIAYKFPAEEKETRLLDVVFQVGRTGRVTPVGILEPVFLEG 354 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + ++ TLHNE YI+ L DIR+GD VLV +AG VIP+V+ ++ R + Sbjct: 355 SEVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGEE 403 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 +P +P CP C R++++ HRC L C A++ E ++HF SR A +I+G Sbjct: 404 RPIRWPETCPECGHRLLKE--------GKVHRCPNPL-CPAKRFEAIRHFASRKAMDIQG 454 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG++ ++ + ++ AD++ L++ + G+ S NL I + Sbjct: 455 LGEKLIERLLEK----GLVKDVADLYRLRKEDLVG------LERMGEKSAQNLLRQIEES 504 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + LER +++LG+ VG +AR+LA + + + + + Sbjct: 505 KRRGLERLLYALGLPGVGEVLARNLAARFGNMDRLLEASLEELLEVEEVGEL-------- 556 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A+AI+E ++P V L + + + ++ V TG L + R + Sbjct: 557 --TARAILETLKDPAFRDLVRRLKEAGVEMEAK--EKGGEALKGLTFVITGELSR-PREE 611 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + +LGA V+ +SRKT ++VG+NPGSKLEKA+ LGV + EE+ LL+ Sbjct: 612 VKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLE 665 >gi|306827641|ref|ZP_07460921.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes ATCC 10782] gi|304430204|gb|EFM33233.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes ATCC 10782] Length = 652 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 210/701 (29%), Positives = 351/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L ++ + YY P + DS+YD L R + ++P+ + P + Sbjct: 2 KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQ---DSPTQQ 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + + E KIDG Sbjct: 59 VGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVK-----AEFPNATYLAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G A RGDG+ GE+++ I+ I IP LS + I VRGE Y+S+ Sbjct: 114 SISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSEPL--TITVRGEAYMSRQS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N+ G +ANPRNAA+G LR+L+ + + + S Q E+ Sbjct: 172 FKAINEARQENGETEFANPRNAAAGTLRQLDTSVV-AKRQLATFLYQEASPTARNQQNEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ LGF VN + ++ I + +++ R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+++++++R+ P CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +V + A RC L C + L+HF SRDA NI GLG ++ F Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + ADI+ L + + G + S L +I ++ S E+ +F L Sbjct: 450 --LAGFVHDVADIYQLTKEDFM------QLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRH+G++++R + + + R+ +G IAQ++ ++++ Sbjct: 502 GIRHIGSKVSRLILEVCGDISALLTAKE----------EEIARIDGLGSTIAQSLTQYFE 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 V+ L + N + + +V TG L ++ R++A++ + LGA Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTD++I G + GSKLEKA+ LG++I +E+ L Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRKL 652 >gi|94994051|ref|YP_602149.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS10750] gi|123257616|sp|Q1J7G9|DNLJ_STRPF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|94547559|gb|ABF37605.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS10750] Length = 652 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 211/701 (30%), Positives = 351/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L ++ + YY P + DS+YD L R + ++P+ + P + Sbjct: 2 KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQ---DSPTQQ 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + + E KIDG Sbjct: 59 VGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVK-----AEFPNATYLAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G A RGDG+ GE+++ I+ I IP LS + I VRGE Y+S+ Sbjct: 114 SISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSEPL--TITVRGEAYMSRQS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N+ G +ANPRNAA+G LR+L+ + + S Q E+ Sbjct: 172 FKAINEARQENGETEFANPRNAAAGTLRQLDTAVV-AKRQLATFLYQEASPTARNQQNEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ LGF VN + ++ I + +++ R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+++++++R+ P CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +V + A RC L C + L+HF SRDA NI GLG ++ F Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + ADI+ L + + G + S L +I ++ S E+ +F L Sbjct: 450 --LAGFVHDVADIYQLTKENFM------QLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRH+G++++R + + Y + R+ +G IAQ++ ++++ Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKE----------EEIARIDGLGSTIAQSLTQYFE 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 V+ L + N + + +V TG L ++ R++A++ + LGA Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTD++I G + GSKLEKA+ LG++I +E+ L Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRQL 652 >gi|94988258|ref|YP_596359.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS9429] gi|94992132|ref|YP_600231.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS2096] gi|122986939|sp|Q1JCM1|DNLJ_STRPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123080420|sp|Q1JMJ7|DNLJ_STRPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|94541766|gb|ABF31815.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS9429] gi|94545640|gb|ABF35687.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS2096] Length = 652 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 211/701 (30%), Positives = 352/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L ++ + YY P + DS+YD L R + ++P+ + P + Sbjct: 2 KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQ---DSPTQQ 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + + E KIDG Sbjct: 59 VGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVK-----AEFPNATYLAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G A RGDG+ GE+++ I+ I IP LS + I VRGE Y+S+ Sbjct: 114 SISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSEPL--TITVRGEAYMSRQS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N+ G +ANPRNAA+G LR+L+ + + + S Q E+ Sbjct: 172 FKAINEARQENGETEFANPRNAAAGTLRQLDTSVV-AKRQLATFLYQEASPTARNQQNEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ LGF VN + ++ I + +++ R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LAELAGLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+++++++R+ P CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +V + A RC L C + L+HF SRDA NI GLG ++ F Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + ADI+ L + + G + S L +I ++ S E+ +F L Sbjct: 450 --LAGFVHDVADIYQLTKENFM------QLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRH+G++++R + + Y + R+ +G IAQ++ ++++ Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKE----------EEIARIDGLGSTIAQSLTQYFE 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 V+ L + N + + +V TG L ++ R++A++ + LGA Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTD++I G + GSKLEKA+ LG++I +E+ L Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRQL 652 >gi|307708748|ref|ZP_07645210.1| DNA ligase, NAD-dependent [Streptococcus mitis NCTC 12261] gi|307615114|gb|EFN94325.1| DNA ligase, NAD-dependent [Streptococcus mitis NCTC 12261] Length = 652 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 214/700 (30%), Positives = 357/700 (51%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K ++ L ++ + YY P + DSEYD L R + A+PD + + P +++ Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPDQVLA---DSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 60 GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKEVAHP-----TYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YEKG V A RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 115 ISLTYEKGILVVGATRGDGSVGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q ++L Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASLSTRDSQEKVL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN A I ++ E+ R LPYDIDG+V KV++ + Q++LG Sbjct: 232 KHLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRISEEKL-DIPTNCPSCN 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S ++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSVVEKLF--- 449 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A ++ ADI+ LQ + G + S + LY +I + S E+ +F LG Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSASKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG++ ++ L +++ S +N AQ D + + +G +IA+++ ++ Sbjct: 503 IRHVGSKASQLLLQHFHSIENLAQA----------DPEEVASIESLGGVIAKSLQTYFAT 552 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + + L + + + + +V TG L++++R +A+ + LGA V Sbjct: 553 EGSEILLRELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KTD+++ G + GSKL+KAQ+LG+++ +E L Sbjct: 613 TGSVSKKTDLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652 >gi|302037359|ref|YP_003797681.1| DNA ligase (NAD(+)) [Candidatus Nitrospira defluvii] gi|300605423|emb|CBK41756.1| DNA ligase (NAD(+)) [Candidatus Nitrospira defluvii] Length = 675 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 236/722 (32%), Positives = 368/722 (50%), Gaps = 70/722 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + A + ++ L ++I +HD YY +P I D+EYD L R + A PDL Sbjct: 6 MPHQTAEQRIADLRRQIRHHDHLYYTKDRPEISDAEYDRLFRELVDLETAHPDLVTG--- 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G L KV+H P LSL+ I + +D+R F R+ R + + I +T E Sbjct: 63 DSPTQRVGAPPLDELTKVSHEKPMLSLDSITDQDDVRAFDARMKREL---ETDQIVYTAE 119 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI--PEIIEVRG 189 PK DG + + Y++G FV A RGDG GEDV+ +R I +P L P + VRG Sbjct: 120 PKFDGLSVELVYDRGAFVRGATRGDGMVGEDVTINLRTIRALPLQLDPQPSLPAHLVVRG 179 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE 248 EVY+ ++F LN M G + +ANPRNAA+G LR+L+ +R L + + S Sbjct: 180 EVYMRLDEFQVLNRRMTERGEEAFANPRNAAAGSLRQLDSRITASRPLTLTCYDIMAISG 239 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 ++ L + G PV ++ + ++S+ ++R +LP++IDG+V K+D Sbjct: 240 TAPPTHWDELDALAAWGLPVPEHRQRCRSIDEVLSFQQATDAMRDSLPFEIDGVVVKLDR 299 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q QLG ++RSPRW I++KFA ++ T + DI + +GRTG LTP+A L+PV +GG I Sbjct: 300 RTWQDQLGSKSRSPRWAIAYKFAPRKEITVIQDIAVSVGRTGTLTPLALLKPVEVGGVTI 359 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHN D + +D+RVGD V V+RAG+VIP + + + +PF Sbjct: 360 SRATLHNADEVAR-----------KDVRVGDTVKVERAGDVIPAIAERVPVPGETRQEPF 408 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP+C S V R+ A CTG C AQ ++HF S+ A +I+G+GK Sbjct: 409 VMPDHCPVCGSAVARE--------GAYFYCTGQTVCVAQLKGAIEHFASKSALDIDGMGK 460 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + +R AD+++L + Q + + GF D S L +SI + +++ Sbjct: 461 KTIAQLVD----VGLVRDLADLYSLTKDQILT------LEGFADRSANLLLESIERSKSV 510 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SL+R + LGIR VG IAR LAK + + L++V +G I Sbjct: 511 SLDRLLMGLGIRQVGQHIARVLAKQFGTLSKLMSATQ----------EDLLQVREIGPEI 560 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKA 666 + ++ F+ RN + L++ +N S + K VFTG L+ R +A Sbjct: 561 SASLTSFFSEERNRAVIARLIERGLTIAPPTTENTTGSQHLAGKTFVFTGGLEGYSRDQA 620 Query: 667 QEYVTQLGAV----------VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +E V Q G ++ G +PGSKL++AQ+LGV+I+ E +F Sbjct: 621 KELVEQQGGQVSSSVSKKAS----------FVVAGTDPGSKLDQAQKLGVRILTEAEFTA 670 Query: 717 LL 718 L+ Sbjct: 671 LV 672 >gi|50913936|ref|YP_059908.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS10394] gi|81372213|sp|Q5XCY8|DNLJ_STRP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|50903010|gb|AAT86725.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS10394] Length = 652 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 210/701 (29%), Positives = 351/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L ++ + YY P + DS+YD L R + ++P+ + P + Sbjct: 2 KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQ---DSPTQQ 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + + E KIDG Sbjct: 59 VGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVK-----AEFPNATYLAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G A RGDG+ GE+++ I+ I IP LS + I VRGE Y+S+ Sbjct: 114 SISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSEPL--TITVRGEAYMSRQS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N+ G +ANPRNAA+G LR+L+ + + + S Q E+ Sbjct: 172 FKAINEARQENGETEFANPRNAAAGTLRQLDTSVV-AKRQLATFLYQEASPTARNQQNEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ LGF VN + ++ I + +++ R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+++++++R+ P CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +V + A RC L C + L+HF SRDA NI GLG ++ F Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + ADI+ L + + G + S L +I ++ S E+ +F L Sbjct: 450 --LAGFVHDVADIYQLTKEDFM------QLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRH+G++++R + + Y + R+ +G IAQ++ ++++ Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKE----------EEIARIDGLGSTIAQSLTQYFE 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 V+ L + N + + +V TG L ++ R++A++ + LGA Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTD++I G + GSKLEKA+ LG++I +E+ Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRKF 652 >gi|27468507|ref|NP_765144.1| DNA ligase [Staphylococcus epidermidis ATCC 12228] gi|81843559|sp|Q8CRU0|DNLJ_STAES RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|27316054|gb|AAO05188.1|AE016749_134 DNA ligase [Staphylococcus epidermidis ATCC 12228] Length = 665 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 242/708 (34%), Positives = 379/708 (53%), Gaps = 53/708 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ +K + L ++ + YY P + DSEYD L I +P+ + Sbjct: 1 MQDVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFK---STDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N EDLRKF RI K + + E K Sbjct: 58 PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRDSIGK-----VEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++YE G+FV RGDG +GED++ +R I IP + + EVRGE Y+ Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLN--FEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + F+ LN+E G +P+ANPRNAA+G LR+L+ R L+ F++ + +E A Sbjct: 171 PRRSFIHLNNEKEQNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L+++ LGF N + + G+++Y + S R +L YDIDG+V KV++ S Q Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRGSLSYDIDGIVIKVNDLSQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +++G +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V++K+AG++IP+VV I++ R +++ + P+ Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++++ I+ ADIF L+ + G V NL +I K + SLE Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDL------LPLERMGKKKVDNLLLAIEKSKEQSLEH 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + + + LI + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTES----------ELIEIQDIGDKLAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SE-IENKKLVFTGTLQKIQRHKAQE 668 V + +N +E L + + K K +V TG L+++ R++A E Sbjct: 553 VTYLENSDIRSLIEKLSNKNVNMSYKGIKTTEIEGHPDFSGKTIVLTGKLEQMTRNEASE 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 ++ GA V++ +++ TDI+I G + GSKL KA++ G +I E F+ Sbjct: 613 WLKMQGAKVTSSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFIE 660 >gi|84500836|ref|ZP_00999071.1| DNA ligase, NAD-dependent [Oceanicola batsensis HTCC2597] gi|84390903|gb|EAQ03321.1| DNA ligase, NAD-dependent [Oceanicola batsensis HTCC2597] Length = 626 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 266/635 (41%), Positives = 393/635 (61%), Gaps = 13/635 (2%) Query: 85 SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144 K+TH++ +SL ++ D+ +F RI + D + +T EPKIDG +++RYE Sbjct: 2 GFGKITHAVRMMSLANAFDDADVAEFDARIRSYLNLAADAPLAYTAEPKIDGLSLSLRYE 61 Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204 G+ V AA RGDG GE+V+A R I IP ++ PE++EVRGEVY+S DF ALN Sbjct: 62 NGRLVQAATRGDGEVGENVTANARTIDDIPVEVTGA-PEVMEVRGEVYMSHADFAALNAR 120 Query: 205 MIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263 G K +ANPRNAA+G LR+L+ R L FF + G S A Q + ++++R Sbjct: 121 QAERGGKTFANPRNAAAGSLRQLDAQITRARPLRFFAYSWGDLSAPLAATQTQAIERLRR 180 Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323 LGF N R+ + ++ +Y ++ R+TL YDIDG+VYKVD+ +LQ +LG R+ +PR Sbjct: 181 LGFRTNPLTRRCDGPQDMLDHYRSIEEQRATLGYDIDGVVYKVDDLALQNRLGSRSTTPR 240 Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383 W ++HKF + A TRL IDIQ+GRTG L+PVARL PV +GG +++NATLHNEDYI G D Sbjct: 241 WALAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGGVVVSNATLHNEDYIAGRD 300 Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443 + G+ +RGG+DIR+GD V V RAG+VIPKV D+ +++R DA+P+ FP+ CP C S +R Sbjct: 301 SRGEEIRGGKDIRIGDWVQVYRAGDVIPKVADVDLSKRPDDAEPYVFPTKCPECGSDALR 360 Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503 + A RCTGG+ C AQ +E+LKHFVSR AF+IEGLG +Q++ F+ Sbjct: 361 EPG------DAVRRCTGGVVCPAQAVEKLKHFVSRAAFDIEGLGARQVEAFYTD----GW 410 Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563 I PA+IFTL+ R ++N G+G+ S TNL+ +I+++R I L R +F+LGIRHVG Sbjct: 411 ITEPAEIFTLEERYGRGLRALKNREGWGEKSATNLFRAIDEKRRIPLSRLLFALGIRHVG 470 Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623 + +A +Y ++ + + A L + VG+++A ++ + NP Sbjct: 471 ESASALIANHYGTWDALEEAMVAA-AEPGQAREDLTGIDGVGEVMATSLTSAFANPAERA 529 Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 +++ L+ + R S + K +VFTGTL+K+ R +A+ LGA VS +S Sbjct: 530 SMDRLVAHLDVQESRRAVAADSPVAGKTVVFTGTLEKMTRAEAKARAESLGAKVSGSVSA 589 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 KTD+++ G GSK +KA +LGV+ M+E+ +L L+ Sbjct: 590 KTDLLVAGPGAGSKAKKAAELGVETMDEDGWLALI 624 >gi|21223850|ref|NP_629629.1| NAD-dependent DNA ligase LigA [Streptomyces coelicolor A3(2)] gi|7674017|sp|Q9Z585|DNLJ1_STRCO RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 1 gi|4467245|emb|CAB37570.1| putative DNA ligase [Streptomyces coelicolor A3(2)] Length = 735 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 221/737 (29%), Positives = 352/737 (47%), Gaps = 62/737 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +AR+ + L ++I H YY P++ D+E+D L R + + P+L P Sbjct: 17 PAEARERHAQLAEQIEEHRFRYYVNDAPVVSDAEFDRLLRTLEELEERHPEL---RTPES 73 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+ G V H LSL+ +N ++L + RI R + F E K Sbjct: 74 PTQKVAGAYATEFTAVQHPTRMLSLDNTFNDDELAAWFERIARELGE---QEYHFLCELK 130 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG + + YE+G+ V AA RGDG +GED++ +R I IP L+ + P+++E+RGEVY Sbjct: 131 VDGLAVNLTYERGRLVRAATRGDGRTGEDITPNVRTIAEIPDRLAGDKVPDLVEIRGEVY 190 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 F LN + G KP+AN RNAA+G LR+ +P +R L+ VHG+G Sbjct: 191 FPMEKFQELNARLNEAGDKPFANARNAAAGSLRQKDPRVTASRPLHMVVHGIGTLEGYSG 250 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + ++ G P + R + G+ + R ++ ++IDG+V KVDE Sbjct: 251 LTRLSQAYDLLKAWGLPTSPHNRVVDGLDGVREFIAYYGENRHSVAHEIDGVVVKVDEIR 310 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG AR+PRW I++K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ + Sbjct: 311 LQGRLGSTARAPRWAIAYKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVAGSEVEF 370 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN++ +K + + +GD V++++AG+VIP+++ + + R + F Sbjct: 371 ATLHNQEVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVM 419 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK-- 488 P+ CP C + + + RC AC AQ ER+ + R+ +IE G Sbjct: 420 PAECPECGTPLKAM-----KEGDIDLRCPNARACPAQLRERVAYLAGRECLDIEHFGGVV 474 Query: 489 ----------------QQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTSTTK-----IE 525 + D F + + I+ L +R + + Sbjct: 475 AAALTGPLEPSEPPLVDEGDLFDLTVEKLLPIKAYVLDPDSGLPKRDPKTGEEKIATVFA 534 Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 N G + L I + + L RFI L IR+VG A++LA+ + S Q Sbjct: 535 NKEGEPKKNTLALLQHIEEAKTRPLARFINGLSIRYVGPVAAQALAREFRSIDRIEQATE 594 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNV 643 L VG IA A+ E++ + V P R E Sbjct: 595 ----------EELASTDGVGGAIATAVKEWFAVDWHREIVRKWKAAGVPLEDRSTGEDEG 644 Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 +E +V TGTL+ R A+E + GA V+ +S+KT ++VGDNPGSK +KA Q Sbjct: 645 PRPLEGLTVVVTGTLENFTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQ 704 Query: 704 LGVKIMNEEQFLFLLQQ 720 L V ++NE+ F LL+Q Sbjct: 705 LKVPVLNEDGFAVLLEQ 721 >gi|256824829|ref|YP_003148789.1| DNA ligase, NAD-dependent [Kytococcus sedentarius DSM 20547] gi|256688222|gb|ACV06024.1| DNA ligase, NAD-dependent [Kytococcus sedentarius DSM 20547] Length = 770 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 211/759 (27%), Positives = 346/759 (45%), Gaps = 79/759 (10%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E R + L + + H YY +P I D+++DAL R + + P L P P Sbjct: 37 EGVRHQWDDLARRVREHRFAYY-LGRPTISDADFDALFRELEQLESEHPGL---RTPESP 92 Query: 75 LNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + V H+ LSL+ +++ E+L + R D + + E K Sbjct: 93 TQEVGAPVFETGFDAVDHAERMLSLDNVFSSEELAAWFQRARDAAGTTD---LHYLCELK 149 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN------------I 181 IDG + + YE G V AA RGDG +GED++ +R I +P L + Sbjct: 150 IDGLAVNLTYEDGVLVRAATRGDGRTGEDITLNVRTIQGVPHRLERPADLADDATATVDV 209 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240 P ++EVRGEV++ F LN + G+ +ANPRNAA+G LR+ +P +R L V Sbjct: 210 PPLVEVRGEVFLPLEKFAELNARQVEAGKAAFANPRNAAAGSLRQKDPRVTASRPLRMIV 269 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 HG+G Q E + + G PV + + +T I Y R +++D Sbjct: 270 HGIGAREGFDIARQSEAYEVLAGWGLPVTSHAKVLDTLEEIEQYVAYWGGHREGAEHELD 329 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V K+DE ++Q+QLG +R+PRW I+ K+ ++ +T+LLDI + +GRTG +TP +EP Sbjct: 330 GIVIKIDEVTVQRQLGSTSRAPRWAIAWKYPPQEVTTKLLDIAVNVGRTGRVTPFGVMEP 389 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V + G+ ++ ATLHN ++ + + +GD V++++AG+VIP+++ + + Sbjct: 390 VTVAGSTVSMATLHNAHEVQR-----------KGVLIGDTVVLRKAGDVIPEILGPVADL 438 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R F P+ CP C + + + RC +C +Q ERL R A Sbjct: 439 RDGSETAFVMPTHCPSCGTELA-----PAKEGDKDIRCPNSRSCPSQLRERLFGLAGRGA 493 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL------------ 528 F+IE LG + A + A +F L T+ Sbjct: 494 FDIESLGWEGAGALLD----AGVLTDEAGVFDLTAEDLLRTSLYTRAAKKAEAAAAEEGD 549 Query: 529 -------------GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575 L D++ + + L R + +L IRHVG AR+LA ++ Sbjct: 550 PEGVLPPGGVVDGRVLSAVGVRLLDNLQQVKEQPLWRVLVALSIRHVGPTAARALAGHFA 609 Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY---QNPRNICAVEALLKEV 632 + + L V VG IA+A+ E++ N + V+ Sbjct: 610 TMEAIRAA----------STEELAAVEGVGPTIAEAVTEWFGGEGNGWHRQIVDTWAAAG 659 Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 ++++ +E +V TG+L+ R +++E + G S +S+KTD ++VG Sbjct: 660 VRMADERDESIERTLEGLTVVVTGSLEGWSRDESKEAILTRGGKASGSVSKKTDYVVVGA 719 Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731 N GSK KA++LG+ I++EEQF LL +DD Sbjct: 720 NAGSKATKAEELGLPILSEEQFGELLATGRVEGVTPEDD 758 >gi|55981066|ref|YP_144363.1| DNA ligase [NAD+] [Thermus thermophilus HB8] gi|118780|sp|P26996|DNLJ_THET8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+]; AltName: Full=Tth DNA ligase gi|94721|pir||A40363 DNA ligase (NAD) (EC 6.5.1.2) - Thermus aquaticus gi|155088|gb|AAA27486.1| DNA ligase [Thermus thermophilus] gi|155090|gb|AAA27487.1| DNA ligase [Thermus thermophilus] gi|55772479|dbj|BAD70920.1| DNA ligase [NAD+] [Thermus thermophilus HB8] Length = 676 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 238/714 (33%), Positives = 379/714 (53%), Gaps = 55/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++E+ARK ++ L I YH+ YY + P I D+EYD L R + FP+L P Sbjct: 1 MTLEEARKRVNELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPELK---SP 57 Query: 72 NGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G + V H SL+ +N+++L+ F RI R +K +T+ Sbjct: 58 DSPTLQVGARPLEATFRPVRHPTRMYSLDNAFNLDELKAFEERIERALGRK--GPFAYTV 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K+DG + + YE+G VY A RGDG GE+V+ + IPTIPR L PE +EVRGE Sbjct: 116 EHKVDGLSVNLYYEEGVLVYGATRGDGEVGEEVTQNLLTIPTIPRRLKGV-PERLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHGLG--K 245 VY+ FL LN+E+ G + + NPRNAA+G LR+ +P + F+ GLG + Sbjct: 175 VYMPIEAFLRLNEELEERGERIFKNPRNAAAGSLRQKDPRITAKRGLRATFYALGLGLEE 234 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 Q+ +L ++ GFPV +G +A G+ + Y + R LP++ DG+V K Sbjct: 235 VEREGVATQFALLHWLKEKGFPVEHGYARAVGAEGVEAVYQDWLKKRRALPFEADGVVVK 294 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 +DE +L ++LG AR+PR+ I++KF ++ TRLLD+ Q+GRTG +TPV LEPV + G Sbjct: 295 LDELALWRELGYTARAPRFAIAYKFPAEEKETRLLDVVFQVGRTGRVTPVGILEPVFLEG 354 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + ++ TLHNE YI+ L DIR+GD VLV +AG VIP+V+ ++ R + Sbjct: 355 SEVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGEE 403 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 +P +P CP C R++++ HRC L C A++ E ++HF SR A +I+G Sbjct: 404 RPIRWPETCPECGHRLLKE--------GKVHRCPNPL-CPAKRFEAIRHFASRKAMDIQG 454 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG++ ++ + ++ AD++ L++ + G+ S NL I + Sbjct: 455 LGEKLIERLLEK----GLVKDVADLYRLRKEDLVG------LERMGEKSAQNLLRQIEES 504 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + LER +++LG+ VG +AR+LA + + + + + Sbjct: 505 KKRGLERLLYALGLPGVGEVLARNLAARFGNMDRLLEASLEELLEVEEVGEL-------- 556 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A+AI+E ++P V L + + + ++ V TG L + R + Sbjct: 557 --TARAILETLKDPAFRDLVRRLKEAGVEMEAK--EKGGEALKGLTFVITGELSR-PREE 611 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + +LGA V+ +SRKT ++VG+NPGSKLEKA+ LGV + EE+ LL+ Sbjct: 612 VKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLE 665 >gi|306829554|ref|ZP_07462744.1| NAD-dependent DNA ligase LigA [Streptococcus mitis ATCC 6249] gi|304428640|gb|EFM31730.1| NAD-dependent DNA ligase LigA [Streptococcus mitis ATCC 6249] Length = 652 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 215/700 (30%), Positives = 361/700 (51%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K ++ L ++ + YY P + DSEYD L R + A+PD + + P +++ Sbjct: 3 KRMNELVALLNRYASEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLA---DSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 60 GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKELPHP-----TYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YEKG V A RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 115 ISLTYEKGILVAGATRGDGSIGENITENLKRVKDIPLTLPEKL--DITVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q ++L Sbjct: 173 DLVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKVL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN A + I ++ E+ R LPYDIDG+V KV++ + Q++LG Sbjct: 232 KHLEQLGFVVNPKRILAESMDEIWNFIQEVGQEREHLPYDIDGVVIKVNDLAGQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCD 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S+++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 400 SQLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A ++ ADI+ L+ + G + S + LY +I + S E+ +F LG Sbjct: 450 -AANLVKDVADIYRLKEDDF------LLLEGVKEKSASKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG++ ++ L +++ + +N AQ D + + +G +IAQ + ++ Sbjct: 503 IRHVGSKASQLLLQHFHTIENLAQA----------DPEEVASIESLGSVIAQGLQTYFAT 552 Query: 619 PRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + ++ L + EV+ + + + +V TG L+++ R +A+ + LGA V Sbjct: 553 EGSKILLDELKEAEVNLAYKGQTVVADAALSGLTVVLTGKLERLTRSEAKSKLESLGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KTD+++ G + GSKL+KAQ+LG+++ +E L Sbjct: 613 TGSVSKKTDLVVAGTDAGSKLQKAQELGIEVRDEAWLESL 652 >gi|282854737|ref|ZP_06264072.1| DNA ligase (NAD(+)) [Propionibacterium acnes J139] gi|282582319|gb|EFB87701.1| DNA ligase (NAD(+)) [Propionibacterium acnes J139] gi|314982008|gb|EFT26101.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA3] gi|315090823|gb|EFT62799.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA4] Length = 740 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 209/743 (28%), Positives = 339/743 (45%), Gaps = 74/743 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R + L Q I D YY P I D+EYD L + P+L P+ P + Sbjct: 21 RHHWTELAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPTQR 77 Query: 78 IGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +G V H LSL+ ++ ++L ++I+R+ K + F E KIDG Sbjct: 78 VGAPQRVTDFAPVKHLERLLSLDNVFTRDELSEWISRVATAVGKIPN----FLCELKIDG 133 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVYISK 195 + + Y G+ V A RGDG GEDV+A +R I IP+ L+ + +EVRGEV+ Sbjct: 134 LAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPQKLTGDDVPRLLEVRGEVFFPV 193 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF LN ++ G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Q Sbjct: 194 ADFADLNAALVEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFPSQ 253 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 K+ G PV+ + + + R + IDG+V KVD+ SLQ++ Sbjct: 254 GHAYDKLAQWGLPVSPYFKIVEHADEVQEFVTRWGESRDEASHQIDGVVVKVDDVSLQRK 313 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + ATLH Sbjct: 314 LGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVAVAGSTVEMATLH 373 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N +K + + +GD V++++AG+VIP+++ +V R+ + F P C Sbjct: 374 NAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMPDHC 422 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 423 PSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAAIAL 477 Query: 495 FKSED----------------------PAFSIRIPADIFT----LQRRQQTSTTKIENIL 528 E+ A + D +RR+ + Sbjct: 478 TDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQPDDLAEVKVWRRRKVNGGPGPWQLE 537 Query: 529 GFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576 + ++D + K ++ L R + +L IRHVG AR+LA ++ S Sbjct: 538 PYFFTKATAKKPSAPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATHFGS 597 Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636 + + L V VG+IIA+++ +++ + + Sbjct: 598 VEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAAGVRMA 647 Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG+N GS Sbjct: 648 DDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGENAGS 707 Query: 697 KLEKAQQLGVKIMNEEQFLFLLQ 719 K KA+ LG I++E F +LL+ Sbjct: 708 KETKARDLGRPILDEAGFRYLLE 730 >gi|326693831|ref|ZP_08230836.1| DNA ligase, NAD-dependent [Leuconostoc argentinum KCTC 3773] Length = 681 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 237/717 (33%), Positives = 374/717 (52%), Gaps = 51/717 (7%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 + PIE LS A++E++ L+ +++ + YY+ P++ D YDAL R A+ AFP Sbjct: 3 PEFTPIEQLSTSAAQQEVAQLQADLTEYGVAYYEQDAPLVEDHVYDALYARLVALESAFP 62 Query: 64 DLARSEDPNGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 + P +GG + L KV H P LSL ++++E+L + R + + Sbjct: 63 QFVTQ---DSPTQNVGGALTKSGLAKVEHPAPMLSLGDVFSLEELAAWDERTTKSLGFQS 119 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 + LE KIDG + + Y G+ V A+ RG+G GEDV+ ++ I IP+ L+ + Sbjct: 120 ----PYNLELKIDGLAVALTYVDGRLVQASTRGNGTIGEDVTRNVKTIKAIPQQLTEPL- 174 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVH 241 IEVRGE+Y+ K F ALN + A G +P+ANPRNAA+G LR+L+ R L+ FV+ Sbjct: 175 -TIEVRGEIYMPKKSFAALNVQREADGLEPFANPRNAAAGSLRQLDAQVTKQRELSAFVY 233 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 + + Q L + LG P + + I + + R TL Y IDG Sbjct: 234 YTAEPEVLGVTTQSGALARFAELGLPTDTHNQVIEKMADIADFIATYTAKRDTLAYGIDG 293 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V KV+ Q +LG + PRW I++KF ++A T + DI+ +GRTG +TP A ++PV Sbjct: 294 VVVKVNALDNQVELGNTVKIPRWAIAYKFPPEEALTVVRDIEWTVGRTGAVTPTAVMDPV 353 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G + A+LHN DY++ +DIR+GD V + +AG++IP+V +I+++R Sbjct: 354 QLAGTTVQRASLHNPDYLQ-----------QKDIRIGDTVTLHKAGDIIPEVGQVILSQR 402 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 D+ + P CP C S +V A RC C+AQ E L HF SR+A Sbjct: 403 PADSTAYPIPVVCPACGSELVHISGE------VALRCINPF-CAAQIQEGLTHFASRNAM 455 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 NI G+G + +D K A I+ A I+ L T++ ++ F + S NL + Sbjct: 456 NIAGMGPRVIDQLLK----ANYIKDVASIYRL------DMTQLLSLDKFQEKSAANLLAA 505 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I + + SLER +F LGIR VGA+ AR +A+ + + A+ + + Sbjct: 506 ITQSKENSLERLLFGLGIRLVGAKAARLVAEKFKTLSAIAEAT----------VPEIASI 555 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQ 659 +G+ IAQ+IV+++ +P + + L + E + +S KK+V TG L+ Sbjct: 556 DGIGEAIAQSIVQYFSHPESQQLLIELTAAGVNQTYLSDVEVDENSFFYGKKIVLTGKLE 615 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + R A +++ GA V+ +S KTD++I G + GSKLEKA LGV + E++FL Sbjct: 616 QSSRPAATKWLQDHGAQVAGSVSAKTDLLIAGADAGSKLEKATALGVLVWTEQEFLE 672 >gi|209559128|ref|YP_002285600.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes NZ131] gi|254781429|sp|B5XKP3|DNLJ_STRPZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|209540329|gb|ACI60905.1| DNA ligase [Streptococcus pyogenes NZ131] Length = 652 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 211/701 (30%), Positives = 351/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L ++ + YY P + DS+YD L R + ++P+ + P + Sbjct: 2 KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQ---DSPTQQ 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + + E KIDG Sbjct: 59 VGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVK-----AEFPNATYLAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G A RGDG+ GE+++ I+ I IP LS + I VRGE Y+S+ Sbjct: 114 SISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSEPL--TITVRGEAYMSRQS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N+ G +ANPRNAA+G LR+L+ + + S Q E+ Sbjct: 172 FKAINEARQENGETEFANPRNAAAGTLRQLDTAVV-AKRELATFLYQEASPTARNQQNEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ LGF VN + ++ I + +++ R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+++++++R+ P CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +V + A RC L C + L+HF SRDA NI GLG ++ F Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + ADI+ L + + G + S L +I ++ S E+ +F L Sbjct: 450 --LAGFVHDVADIYQLTKENFM------QLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRH+G++++R + + Y + R+ +G IAQ++ ++++ Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKE----------EEIARIDGLGSTIAQSLTQYFE 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 V+ L + N + + +V TG L ++ R++A++ + LGA Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTD++I G + GSKLEKA+ LG++I +E+ L Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRQL 652 >gi|300361107|ref|ZP_07057284.1| NAD-dependent DNA ligase LigA [Lactobacillus gasseri JV-V03] gi|300353726|gb|EFJ69597.1| NAD-dependent DNA ligase LigA [Lactobacillus gasseri JV-V03] Length = 668 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 214/715 (29%), Positives = 364/715 (50%), Gaps = 50/715 (6%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + L+ QA +++ L +++ + YY PI+ D+ YD + + FPDL S Sbjct: 1 MAVLTHNQASQKVDELRKKLDEWAEDYYAKDAPIVEDAVYDKAYQELVELEKRFPDLVTS 60 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + ++GGE+ L KV H IP LS+ +++ ++L++F RI + + + + Sbjct: 61 ---DSITQRVGGEIKSDLSKVEHPIPMLSMGDVFSKDELKEFDDRITKLVG----HPVAY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ Y GK A+ RG+G GEDV+A + I IP+ L + EVR Sbjct: 114 NVELKIDGLSLSLEYTAGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPEPL--TTEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+ K F LN E G + +ANPRNAA+G LR+L+ + Sbjct: 172 GECYMEKEAFAKLNAERDEKGEQVFANPRNAAAGSLRQLDARITKKRNLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ + +M LGF N R+ + + + +E + R+ L Y IDG+V KVD+ Sbjct: 232 RNITSQHQAIDEMNRLGFHTNQTGRRLESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 SLQ +LG + PRW I++KF ++ T + +I+ +GRTG++TP A + PV + G ++ Sbjct: 292 LSLQNELGNTVKVPRWEIAYKFPPEEQETIVKEIEWTVGRTGVVTPTAVMNPVQLAGTVV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN DY++ + +R+GD V + +AG++IP++ +++N+R D++P+ Sbjct: 352 SRASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLNKRPKDSEPY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C +V + A RC + C AQ E + HF SR A NI GLG Sbjct: 401 EIPNKCPSCGQDLVHLQDE------VALRCINPM-CPAQVEEGIIHFASRGAMNIMGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + + AD++ L Q + + F D S+TNL SI + Sbjct: 454 RIVKQLIDKK----FVNDVADLYHLTNEQLS------QLDHFKDKSITNLLTSIENSKQN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S E +F LGI HVGA+ AR + + Y + + +Q LI + +G+ I Sbjct: 504 SAELLLFGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELISIDTIGETI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A+++ ++ P ++ L E+ + + K +V TG L R + Sbjct: 554 AESLTAYFNQPSAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKLSDFTRSE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + LGA V+ +S+KTD +I G + GSK +KA++L V ++ E++ + +++ Sbjct: 614 FTKKLQNLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKIEK 668 >gi|307326508|ref|ZP_07605703.1| DNA ligase, NAD-dependent [Streptomyces violaceusniger Tu 4113] gi|306887916|gb|EFN18907.1| DNA ligase, NAD-dependent [Streptomyces violaceusniger Tu 4113] Length = 732 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 213/743 (28%), Positives = 350/743 (47%), Gaps = 62/743 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + R+ + L ++I H YY P++ D+E+D L R +A+ P L P+ Sbjct: 10 PAEVRERHARLAEQIEEHRFRYYVKDAPVVSDAEFDKLMRELEALEEETPAL---RTPDS 66 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+ G +V H LSL+ ++ E+L + RI + + F E K Sbjct: 67 PTQKVAGAYETDFTEVEHRERMLSLDNAFDDEELSTWADRIAKELG---SGAYHFLCELK 123 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG + + YE G+ AA RGDG +GED++ +R I IP L+ + P ++EVRGEV+ Sbjct: 124 VDGLAVNLTYENGRLTRAATRGDGRTGEDITPNVRTIAKIPNRLTGDRVPALVEVRGEVF 183 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 +++ F LN ++ G+ P+ANPRNAA+G LR+ +P +R L+ VHG+G Sbjct: 184 LARERFEELNAGLVEAGKPPFANPRNAAAGSLRQKDPKVTASRPLDMVVHGIGARDGFDI 243 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL--PYDIDGLVYKVDEF 309 + + + G P + +T + Y ++IDG V K+DE Sbjct: 244 DRLSQAYELLHEWGLPTAAHFKVVDTIEAVREYIAYYGDSEHRHSVEHEIDGAVVKLDEI 303 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ +LG +R+PRW I+ KF ++ +T+L+DI + +GRTG +TP A +EP+ + G+ + Sbjct: 304 PLQGRLGSTSRAPRWAIAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPITVAGSEVE 363 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN+D +K + + +GD V++++AG+VIP+++ +V+ R + F Sbjct: 364 FATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFV 412 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + + + RC +C AQ ER+ + R + +IE LG Sbjct: 413 MPATCPECDTPLQ-----PAKEGDVDLRCPNSRSCPAQLRERIFYLAGRKSLDIENLGYV 467 Query: 490 QLDFFFKSEDPA-FSIRIPADIFTLQRRQQTSTTKI------------------------ 524 + +P ++ D+F L+ Q Sbjct: 468 AAAALTQPLEPTEPPVKDEGDLFDLKIEQLLPIRSYVLDPDSGLPKRDPETGEAKVVTFF 527 Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 G + + +I + L R I L IRHVG A +LA+ + S A+ Sbjct: 528 ATQKGEAKKNALAMLANIEAAKERPLARIITGLSIRHVGPVAATALAREFRSLDRIAEAD 587 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNV 643 +A VG IA ++ E++ + +E + E Sbjct: 588 EEELAAVE----------GVGSTIAASVKEWFAVDWHREILEKWRRAGVRLEEEGGEDEG 637 Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 +E+ +V TGTLQ R A+E + GA V+ +S+KTD ++VGDNPGSK +KA Q Sbjct: 638 PRPLESLTVVVTGTLQSYTRDGAKEALQSRGAKVTGSVSKKTDFVVVGDNPGSKYDKAMQ 697 Query: 704 LGVKIMNEEQFLFLLQQYNTTLR 726 + V +++E+ F LL+Q R Sbjct: 698 VKVPVLDEDGFGVLLEQGPDAAR 720 >gi|315223028|ref|ZP_07864907.1| DNA ligase, NAD-dependent [Streptococcus anginosus F0211] gi|315187978|gb|EFU21714.1| DNA ligase, NAD-dependent [Streptococcus anginosus F0211] Length = 652 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 207/701 (29%), Positives = 349/701 (49%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L + ++ + YY P + DSEYD L + +P+L ++ + P ++ Sbjct: 2 KDRMLELVKLLNQYAHEYYTTDNPTVSDSEYDRLYHELLDLEQQYPELVQA---DSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ K H P SL+ ++ E+L F RI + D + + E KIDG Sbjct: 59 VGGKVLEGFEKYQHQYPLYSLQDAFSREELEAFDVRIRK-----DFPKVSYLCELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YEKG V A RGDG GE+++ ++ + IP L L + VRGE Y+ ++ Sbjct: 114 SISLMYEKGILVAGATRGDGSVGENITENLKRVKDIP--LVLPTAVNLTVRGECYMPRSS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N G +ANPRNAA+G LR+L+ + N + S A Q + Sbjct: 172 FDRVNRLRQENGEPEFANPRNAAAGTLRQLDTAIV-AKRNLATFLYQEASPTSATSQEAV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ GF VN A++ + + ++ R LPYDIDG+V KV++ +Q++LG Sbjct: 231 LNQLSKNGFSVNERHILAHSMDEVWQFIGQIAQERDQLPYDIDGVVIKVNDLVMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR GD V+V +AG++IP V+ ++ ++R + + P CP C Sbjct: 351 YI-----------AEKDIRKGDTVIVYKAGDIIPAVLQVVESKRQSEEKL-EIPKNCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S ++ + A RC C AQ E L HF SRDA NI GLG ++ F Sbjct: 399 NSELIHFEDE------VALRCINPR-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFDQ 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + + A I+ L + F + S LY +I + S E+ +F L Sbjct: 452 Q----LVNDVAGIYRLTVEDL------LQLENFKEKSANKLYTAIQASKENSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ ++ L K++ + A+ + + + +G +IA+++ ++ Sbjct: 502 GIRHVGSKASQILLKHFHDLEQLAKA----------EKEEIAALDSLGMVIAESLSSYFA 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + L + + + + +V TG L+++ R +A++ + LGA Sbjct: 552 QEGTHILLSELKEAGLNFTYLGEKVAADAVLSGLTVVLTGKLERLNRSEAKKKLESLGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V++ +S+KT +++ G + GSKL KAQ+LG+ I +E L Sbjct: 612 VTSSVSKKTSLVVAGADAGSKLTKAQELGIDIRDEAWLENL 652 >gi|33241290|ref|NP_876232.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|81663882|sp|Q7V9J2|DNLJ_PROMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|33238820|gb|AAQ00885.1| NAD-dependent DNA ligase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 685 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 204/725 (28%), Positives = 360/725 (49%), Gaps = 60/725 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ K +S L ++ + YY P+I D+ +D L R + +P L P Sbjct: 1 MAETNHSKRISELRSLLNKANHAYYILDSPLIEDAVFDRLYRELIELEKQYPSLV---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G + + H IP SL+ +N ++L + +R+ + + E Sbjct: 58 DSPSQRLGNKPATKFESIKHRIPLQSLDNAFNFDELNYWHSRMQKHLKSHS----AMVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGE 190 KIDG + + Y G A RGDG GE+++A ++ I +IP L N P +E+RGE Sbjct: 114 LKIDGNALALSYVNGVLTRGATRGDGAEGEEITANVKTIVSIPLSLHLQNPPAWVEIRGE 173 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL------ 243 +I F++LN E + ++ +ANPRNA SG LR+L+ +R+L+FF + + Sbjct: 174 AFIPNKVFISLNKERLKEEKQLFANPRNACSGTLRQLDSRIVASRHLDFFAYTIHLPDDW 233 Query: 244 --GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G+T KGQ+E L ++ GF VN + + + + + + R LPY DG Sbjct: 234 IPGETDPKKPKGQWEALLWLKAAGFRVNPNAKLISQPDQVEKFCIDWEKRRHQLPYTTDG 293 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V K+D+F LQK LG ++PRW I+ K+ ++A T+L + Q GRTG +TPVA P+ Sbjct: 294 IVIKIDDFKLQKTLGITQKAPRWAIALKYPAEEAPTQLNKLIFQTGRTGTVTPVAEFNPI 353 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 +GG L++ ATLHN + + L DI GD +++++AGE+IP+V+ +I R Sbjct: 354 PLGGTLVSKATLHNANRLSEL-----------DIHEGDTIVIRKAGEIIPEVIRVIKELR 402 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 +A+ P CP C S+++++ K C A L+H+VS+ A Sbjct: 403 PNNAKKLVLPEKCPECNSKLLKETGEAATK-------CLNNDCPAILRGVLRHWVSKGAM 455 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 NI+G G + ++ K + I+ A I+ L+ + +EN+ G S L Sbjct: 456 NIDGFGTKLVEQLVKRK----IIKSIAGIYELKEK------NLENLERMGTKSAEKLLIE 505 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 IN + + ++ LGI H+G A+++A+ + S A S+ + Sbjct: 506 INNSKKQPWHKQLYGLGILHIGEANAKAIAEVFPSISLLADA-------AIASPESISNI 558 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-NVSSEI-------ENKKLV 653 +G I +++ +++ N ++ L +E+ + + + K V Sbjct: 559 YGIGSEITESLHKWFNCSINQNLIKELKDLGIALERVNEEGAIDNILMQEKLQFSGKTFV 618 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 TGT+ + R +E + + G V++ +S KT+ ++ G+ PG+KL+KA++LG+K++NE++ Sbjct: 619 ITGTMPSLSRANLEELIEREGGKVNSSVSSKTNYLVAGEKPGNKLKKAKELGIKVINEQE 678 Query: 714 FLFLL 718 + L+ Sbjct: 679 LMTLI 683 >gi|256380031|ref|YP_003103691.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827] gi|255924334|gb|ACU39845.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827] Length = 816 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 230/712 (32%), Positives = 352/712 (49%), Gaps = 42/712 (5%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 AR +L +E+ H YY P I D E+DAL R ++ A P LA P+ Sbjct: 43 PADARDRHRALAEEVRGHQFRYYVLDAPTISDGEFDALLRELQSLEDAHPGLA---TPDS 99 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + V H LSL+ ++ + LR + R+ K+ ++ + E K Sbjct: 100 PTQQVGGTFSTEFTAVDHLERMLSLDNAFDEDGLRAWFERV----GKEVGDAARYLCELK 155 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRG 189 +DG I +RYE+G+ V A RGDG +GEDV+ +R + +P VL+ PE++EVRG Sbjct: 156 VDGLAINLRYERGRLVRALTRGDGRTGEDVTLNLRTLRDVPEVLTGTDEWPVPELVEVRG 215 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EVY + DFL LN +++ G P+ANPRN A+G LR+ +P +R L HG+GK + Sbjct: 216 EVYFAVEDFLELNAKLVEAGLPPFANPRNTAAGSLRQKDPKVTASRRLRMVCHGIGKRAG 275 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + Q + +R G P + TF + + R ++IDGLV KVDE Sbjct: 276 FELERQSDAYAALRAWGLPTSEHTAVVATFDEVWARVAHWGEHRHDAAHEIDGLVVKVDE 335 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 LQ++LG +R+PRW I+ K+ ++A+T LLDI +Q+GRTG +TP A +EPV + G+ + Sbjct: 336 VPLQRRLGSTSRAPRWAIAFKYPPEEATTTLLDIGVQVGRTGRVTPFAIMEPVKVAGSTV 395 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATLHN +K + + +GDR+++++AG+VIP+V+ +V+ R DA+ F Sbjct: 396 ARATLHNASEVKR-----------KGVLIGDRIVIRKAGDVIPEVLGPVVDVRPADAREF 444 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C + + RC C AQ ERL + SR A ++E LG Sbjct: 445 VMPASCPECGHALRPM-----KEGDVDIRCPNAEGCPAQLRERLAYLASRSALDVEVLGY 499 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + SE AD+F L N G + L +++ ++ Sbjct: 500 EGAAALASSEVYG----NEADLFDLTAEDLLRVDLFRNQDGALVTNGAKLLENLEAAKSQ 555 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L R + +L IRHVG AR+LA + Q +A VG I Sbjct: 556 PLWRVLVALSIRHVGPTAARALAVEFGGVQAILDAEEADLAAAG----------GVGPTI 605 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A A+ E+ P V + + + ++E +V TGTL R +A++ Sbjct: 606 AAAVREWALTPWRQEVVRRWAAAGVRMVDERDTTIRRDLEGLSIVVTGTLADFSRDEAKD 665 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G +S+KT +IVGDNPGSK +KA QL V +++E F LL++ Sbjct: 666 SILVRGGKAVGSVSKKTAFVIVGDNPGSKADKAAQLKVPVLDEAGFRVLLER 717 >gi|314923733|gb|EFS87564.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL001PA1] gi|315104373|gb|EFT76349.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA2] gi|327328187|gb|EGE69956.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL103PA1] Length = 740 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 209/743 (28%), Positives = 339/743 (45%), Gaps = 74/743 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R + L Q I D YY P I D+EYD L + P+L P+ P + Sbjct: 21 RHHWTELAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPTQR 77 Query: 78 IGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +G V H LSL+ ++ ++L ++I+R+ K + F E KIDG Sbjct: 78 VGAPQRVTDFAPVKHLERLLSLDNVFTRDELSEWISRVATAVGKIPN----FLCELKIDG 133 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVYISK 195 + + Y G+ V A RGDG GEDV+A +R I IP+ L+ + +EVRGEV+ Sbjct: 134 LAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPQKLTGDDVPRLLEVRGEVFFPV 193 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF LN ++ G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Q Sbjct: 194 ADFTDLNAALVEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFPSQ 253 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 K+ G PV+ + + + R + IDG+V KVD+ SLQ++ Sbjct: 254 GHAYDKLAQWGLPVSPYFKIVEHADEVQEFVTRWGESRDEASHQIDGVVVKVDDVSLQRK 313 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + ATLH Sbjct: 314 LGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVAVAGSTVEMATLH 373 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N +K + + +GD V++++AG+VIP+++ +V R+ + F P C Sbjct: 374 NAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMPDHC 422 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 423 PSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAAIAL 477 Query: 495 FKSED----------------------PAFSIRIPADIFT----LQRRQQTSTTKIENIL 528 E+ A + D +RR+ + Sbjct: 478 TDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQPDDLAEVKVWRRRKVNGGPGPWQLE 537 Query: 529 GFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576 + ++D + K ++ L R + +L IRHVG AR+LA ++ S Sbjct: 538 PYFFTKATAKKPSAPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATHFGS 597 Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636 + + L V VG+IIA+++ +++ + + Sbjct: 598 VEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAAGVRMA 647 Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG+N GS Sbjct: 648 DDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGENAGS 707 Query: 697 KLEKAQQLGVKIMNEEQFLFLLQ 719 K KA+ LG I++E F +LL+ Sbjct: 708 KETKARDLGRPILDEAGFRYLLE 730 >gi|332362528|gb|EGJ40328.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1056] Length = 652 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 220/701 (31%), Positives = 356/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +S L + ++ + YY +P + DSEYD L R + +P P+ P ++ Sbjct: 2 EERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ K H P SL+ ++ E+L F R+ + + + + E KIDG Sbjct: 59 VGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRVRK-----EFPQVSYLCELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YEKG V A RGDG GE+++ ++ + IP L + I VRGE Y+ K Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N G +ANPRNAA+G LR+L+ + N + S A Q E+ Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQANSQEEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L K+ LGF VN A++ + + ++ R +LPY+IDG+V KV++ ++Q++LG Sbjct: 231 LNKLADLGFSVNPTHILADSIESVWEFIEKIAEERDSLPYEIDGIVIKVNDLAVQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR D V+V +AG++IP V+ ++ ++R + PS CP C Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEPL-EIPSHCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 399 DSELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 ++ A I+ L + + F + S LY +I + S ER +F L Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYTAIQASKENSAERLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ +R L + + +Q + + +G +IAQ++ +++ Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSIGTVIAQSLHTYFE 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + L + + + + +V TG LQK+ R++A+E + LGA Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 VS +S+KTD+++ G + GSKL KAQ+LG++I +E+ L Sbjct: 612 VSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDEDWLDSL 652 >gi|319744895|gb|EFV97229.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae ATCC 13813] Length = 652 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 219/701 (31%), Positives = 360/701 (51%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ L ++ + YY P + DS+YD L R + P+ PN P ++ Sbjct: 2 ENRMNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEEQHPENIL---PNSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + + E KIDG Sbjct: 59 VGGLVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRVK-----AEFPTASYMAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +++ Y G A RGDG+ GE+++ ++ + IP L L+ I VRGE Y+ K Sbjct: 114 SVSLTYVNGILQVGATRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYLPKES 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N E A G + +ANPRNAA+G LR+LN + + S + Q ++ Sbjct: 172 FEAINIEKRANGEQEFANPRNAAAGTLRQLNTGIV-AKRKLATFLYQEASPTQKETQDDV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+++ GF VN+ +++ I + ++ R +LPYDIDG+V KV+ ++Q++LG Sbjct: 231 LKELESYGFSVNHHRLISSSMEKIWDFIQTIEKDRVSLPYDIDGIVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+++++++R+ P CP C Sbjct: 351 YI-----------AEKDIRIGDTVVVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +V + A RC L C Q ERL HF SRDA NI G G ++ F Sbjct: 399 GSELVHFEDE------VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVEKLFD- 450 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A I ADI+ L + + G + S T +Y +I + S E+ +F L Sbjct: 451 ---AHLIADVADIYRLSIEDLLT------LDGIKEKSATKIYHAIQSSKENSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ +R L + + + + +Q S+ + +G +IA+++ F++ Sbjct: 502 GIRHVGSKASRLLLEEFGNLRQLSQASQ----------ESIASIDGLGGVIAKSLHTFFE 551 Query: 618 NPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 +E L V+ + + +++ +V TG L+K+ R++A+E + LGA Sbjct: 552 KEEVDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEKLQNLGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTD+I+ G + GSKL KAQ LG+ I +E+ L L Sbjct: 612 VTGSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 652 >gi|314966144|gb|EFT10243.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL082PA2] Length = 740 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 209/743 (28%), Positives = 339/743 (45%), Gaps = 74/743 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R + L Q I D YY P I D+EYD L + P+L P+ P + Sbjct: 21 RHHWTELAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPTQR 77 Query: 78 IGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +G V H LSL+ ++ ++L ++I+R+ K + F E KIDG Sbjct: 78 VGAPQRVTDFAPVKHLERLLSLDNVFTRDELSEWISRVATAVGKIPN----FLCELKIDG 133 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVYISK 195 + + Y G+ V A RGDG GEDV+A +R I IP+ L+ + +EVRGEV+ Sbjct: 134 LAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPQKLTGDDVPRLLEVRGEVFFPV 193 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF LN ++ G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Q Sbjct: 194 ADFTDLNAALVEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFPSQ 253 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 K+ G PV+ + + + R + IDG+V KVD+ SLQ++ Sbjct: 254 GHAYDKLAQWGLPVSPYFKIVEHADEVQEFVTRWGESRGEASHQIDGVVVKVDDVSLQRK 313 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + ATLH Sbjct: 314 LGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVAVAGSTVEMATLH 373 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N +K + + +GD V++++AG+VIP+++ +V R+ + F P C Sbjct: 374 NAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMPDHC 422 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 423 PSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAAIAL 477 Query: 495 FKSED----------------------PAFSIRIPADIFT----LQRRQQTSTTKIENIL 528 E+ A + D +RR+ + Sbjct: 478 TDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQPDDLAEVKVWRRRKVNGGPGPWQLE 537 Query: 529 GFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576 + ++D + K ++ L R + +L IRHVG AR+LA ++ S Sbjct: 538 PYFFTKATAKKPSAPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATHFGS 597 Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636 + + L V VG+IIA+++ +++ + + Sbjct: 598 VEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAAGVRMA 647 Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG+N GS Sbjct: 648 DDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGENAGS 707 Query: 697 KLEKAQQLGVKIMNEEQFLFLLQ 719 K KA+ LG I++E F +LL+ Sbjct: 708 KETKARDLGRPILDEAGFRYLLE 730 >gi|226357440|ref|YP_002787179.1| NAD-dependent DNA ligase [Deinococcus deserti VCD115] gi|254778147|sp|C1D1Y6|DNLJ1_DEIDV RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 1 gi|226319430|gb|ACO47425.1| putative NAD-dependent DNA ligase [Deinococcus deserti VCD115] Length = 686 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 231/712 (32%), Positives = 354/712 (49%), Gaps = 43/712 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L Q+++ H+ YY+ P I D EYDAL R + P+ A P P Sbjct: 8 AERHAWLTQKVAEHNRRYYEEDAPTIPDFEYDALVRELRELEARHPEFAA---PTSPAQT 64 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-SIFFTLEPKIDG 136 +GG + KV H P SL+ ++ +L F ++ R + + +T E KIDG Sbjct: 65 VGGRPSTLFEKVRHPTPMTSLDNAFSDAELAHFDDKVARALNLPPGSRTFTYTCELKIDG 124 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I + Y G +AA RGDG GE V+A I IP IP L E+ EVRGEVY+SK Sbjct: 125 LSINLYYVDGILQWAATRGDGEVGEKVTANIEGIPGIPTQLPGLQGEL-EVRGEVYMSKA 183 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQY 255 FLA N + GR NPRN A+G LR+ +P + R L ++ LGK + + Q+ Sbjct: 184 TFLAYNLKAEEEGRPLLKNPRNGAAGALRQKDPAETRRRGLEVILYALGKRDGVPVRTQW 243 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 ++L+ +R GF + R+ +Y+ EM + R LP+D DG V K+D+ LQ+ Sbjct: 244 DILEWLRAQGFATSEYARRVTGSEAAAAYHAEMTAQRPQLPFDADGSVVKLDDLRLQEDA 303 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +R+P+W +++KF A T + I IQ GRTG LTPVA L PV + G + ATLHN Sbjct: 304 GYTSRAPKWAVAYKFPADVAQTVIEAITIQTGRTGKLTPVAELRPVLLEGTTVARATLHN 363 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 ED+I+GL D+ VGD V V ++G +IP+V+ +++ +R + P++FP+ CP Sbjct: 364 EDFIRGL-----------DLHVGDTVRVHKSGGIIPEVLGVVLEQRPEGSTPYAFPTHCP 412 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C VR AA AC A+ R+++F SRD +I+GLG++ ++ Sbjct: 413 VCGHEAVRHEG-------AAGTFCTNPACPAKSTLRVRYFASRDVMDIKGLGERLVEQLV 465 Query: 496 KSEDPAFSIRIPADIFTLQRRQ----QTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 A +R PAD++ L Q + T + G + L I + L Sbjct: 466 D----AGLVRDPADLYALTAEQIEHLEMGETTTGGVRRVGRKNAEKLVAEIEASKTRELW 521 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R SLG+ +VG A +A+ Y S ++ Q L R+P VG +A+ Sbjct: 522 RVFRSLGLPYVGEGTATRIARVYRSLEDIRQA----------SVDDLARIPDVGRQVAEG 571 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 IV+ ++ ++ L + V ++ V TGTL + R + ++ Sbjct: 572 IVQGLRDADMCAYLDRLTAAGVQPTPSVDVRVGEQLAGLTFVVTGTLS-VPRDVIKLHLG 630 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 Q GA VS +++KT +I G++ GSKLEKA +L V +++E LL + Sbjct: 631 QYGARVSGSVTKKTSYLIAGEDAGSKLEKATELKVPVLDEAGLQKLLAEKGA 682 >gi|289168011|ref|YP_003446280.1| DNA ligase [Streptococcus mitis B6] gi|288907578|emb|CBJ22415.1| DNA ligase [Streptococcus mitis B6] Length = 652 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 212/700 (30%), Positives = 356/700 (50%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K ++ L ++ + YY P + DSEYD L R + A+PD + + P +++ Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPDQVLA---DSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 60 GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKEVTHP-----TYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YEKG V A RGDG GE+++ ++ + IP +L + I VRGE Y+ + F Sbjct: 115 ISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLILPEEL--DITVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q ++L Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKVL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN I + E+ R LPYDIDG+V KV++ + Q++LG Sbjct: 232 KHLEQLGFVVNPKRILTENIDEIWDFIQEIGQKRENLPYDIDGVVIKVNDLAGQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCD 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S ++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSVVEKLFS-- 450 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A ++ A+I+ LQ + G + S + LY +I + S E+ +F LG Sbjct: 451 --ANLVKDVANIYRLQEEDF------LLLEGVKEKSASKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG++ ++ L +++ S +N AQ D + + +G +IA+++ ++ Sbjct: 503 IRHVGSKASQLLLQHFHSIENLAQA----------DPEEVASIESLGGVIAKSLQTYFAT 552 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + + L + + + + +V TG L++++R +A+ + LGA V Sbjct: 553 EGSEILLRELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KTD+++ G + GSKL+KAQ+LG+++ +E L Sbjct: 613 TGSVSKKTDLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652 >gi|25010923|ref|NP_735318.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae NEM316] gi|81457056|sp|Q8E5W1|DNLJ_STRA3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|23095302|emb|CAD46512.1| Unknown [Streptococcus agalactiae NEM316] Length = 652 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 219/701 (31%), Positives = 360/701 (51%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ L ++ + YY P + DS+YD L R + P+ PN P ++ Sbjct: 2 ENRMNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEEQHPENIL---PNSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + + E KIDG Sbjct: 59 VGGLVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRVK-----AEFPTASYMAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +++ Y G A RGDG+ GE+++ ++ + IP L L+ I VRGE Y+ K Sbjct: 114 SVSLTYVNGILQVGATRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYLPKES 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N E A G + +ANPRNAA+G LR+LN + + S + Q ++ Sbjct: 172 FEAINIEKRANGEQEFANPRNAAAGTLRQLNTGIV-AKRKLATFLYQEASPTQKETQDDV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+++ GF VN+ +++ I + ++ R +LPYDIDG+V KV+ ++Q++LG Sbjct: 231 LKELESYGFSVNHHRLISSSMEKIWDFIQTIEKDRISLPYDIDGIVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+++++++R+ P CP C Sbjct: 351 YI-----------AEKDIRIGDTVVVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +V + A RC L C Q ERL HF SRDA NI G G ++ F Sbjct: 399 GSELVHFEDE------VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVEKLFD- 450 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A I ADI+ L + + G + S T +Y +I + S E+ +F L Sbjct: 451 ---AHLIADVADIYRLSIEDLLT------LDGIKEKSATKIYHAIQSSKENSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ +R L + + + + +Q S+ + +G +IA+++ F++ Sbjct: 502 GIRHVGSKASRLLLEEFGNLRQLSQASQ----------ESIASIDGLGGVIAKSLHTFFE 551 Query: 618 NPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 +E L V+ + + +++ +V TG L+K+ R++A+E + LGA Sbjct: 552 KEEVDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEKLQNLGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTD+I+ G + GSKL KAQ LG+ I +E+ L L Sbjct: 612 VTGSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 652 >gi|251809892|ref|ZP_04824365.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis BCM-HMP0060] gi|282874546|ref|ZP_06283431.1| DNA ligase (NAD(+)) [Staphylococcus epidermidis SK135] gi|293367782|ref|ZP_06614431.1| DNA ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|251806557|gb|EES59214.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis BCM-HMP0060] gi|281296685|gb|EFA89194.1| DNA ligase (NAD(+)) [Staphylococcus epidermidis SK135] gi|291318121|gb|EFE58518.1| DNA ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|329734727|gb|EGG71033.1| DNA ligase (NAD+) [Staphylococcus epidermidis VCU045] gi|329734798|gb|EGG71103.1| DNA ligase (NAD+) [Staphylococcus epidermidis VCU028] Length = 665 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 242/708 (34%), Positives = 378/708 (53%), Gaps = 53/708 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ +K + L ++ + YY P + DSEYD L I +P+ + Sbjct: 1 MQDVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFK---STDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N EDLRKF RI K + + E K Sbjct: 58 PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRDSIGK-----VEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++YE G+FV RGDG +GED++ +R I IP + + EVRGE Y+ Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLN--FEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + F+ LN+E G +P+ANPRNAA+G LR+L+ R L+ F++ + +E A Sbjct: 171 PRRSFIHLNNEKEQNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L+++ LGF N + + G+++Y + S R +L YDIDG+V KV++ S Q Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRGSLSYDIDGIVIKVNDLSQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +++G +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V++K+AG++IP+VV I++ R +++ + P+ Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++++ I+ ADIF L+ + G V NL +I K + SLE Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDL------LPLERMGKKKVDNLLLAIEKSKEQSLEH 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + + + LI + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTES----------ELIEIQDIGDKLAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SE-IENKKLVFTGTLQKIQRHKAQE 668 V + +N +E L + + K K +V TG L+++ R++A E Sbjct: 553 VTYLENSDIRSLIEKLSNKNVNMSYKGIKTTEIEGHPDFSGKTIVLTGKLEQMTRNEASE 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 ++ GA V+ +++ TDI+I G + GSKL KA++ G +I E F+ Sbjct: 613 WLKMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFIE 660 >gi|284992468|ref|YP_003411022.1| DNA ligase, NAD-dependent [Geodermatophilus obscurus DSM 43160] gi|284065713|gb|ADB76651.1| DNA ligase, NAD-dependent [Geodermatophilus obscurus DSM 43160] Length = 716 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 217/715 (30%), Positives = 361/715 (50%), Gaps = 41/715 (5%) Query: 10 EALSI--EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 E L+ + AR L +E+ + YY P++ D +YD L +I A P L Sbjct: 19 EDLTEVPDDARTRHRDLSEELDRYAFAYYVQDAPLVSDGQYDELMGELKSIEAAHPALV- 77 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P K+ G + V H SL+ ++ ++L + R+ R Sbjct: 78 --TPDSPSQKVNGGFAATFAPVKHLERMQSLDNAFSSDELSAWAARVEREVGSAAV---- 131 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186 + E K+DG + + YE+G+ + AA RGDG +GEDV+A +R + +P+ LS + P ++E Sbjct: 132 YLCELKVDGVAVDLVYERGRLLRAATRGDGVTGEDVTANVRTMDDVPQQLSGDDVPPLLE 191 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGE+Y F +N +A G+ P+ANPRNAA+G LR+ + +R L VHGLG Sbjct: 192 VRGEIYFPVEAFAEVNAGQVADGKPPFANPRNAAAGSLRQKDARVTASRPLRLVVHGLGA 251 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + Q E ++R LG PV++ V + G+ +Y + R ++ ++IDG+V K Sbjct: 252 REGFSPERQSEAYARLRELGLPVSDRVEVLDDLEGVWAYIERYREQRHSVEHEIDGVVVK 311 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ +LQ++LG +R+PRW I+ K+ ++A+T+LLDI + +GRTG +TP A +EPV + G Sbjct: 312 VDQVALQRRLGSTSRAPRWAIAFKYPPEEATTKLLDIRVNVGRTGRVTPFAYMEPVKVAG 371 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + + ATLHN +K + + +GD V++++AG+VIP+V+ +V R D Sbjct: 372 STVQLATLHNASEVKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVAARTGDE 420 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + F P+ CP C + + + + A RC +C AQ ER+ H R AF+IE Sbjct: 421 REFEMPTHCPECGTELRHE-----KEGDADIRCPNARSCPAQLRERVFHVAGRGAFDIEN 475 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG + + I D+F+L + T G + L ++ R Sbjct: 476 LGYEAGIALLQE----HLIEDEGDVFSLDEEKLERTAFFTKKDGALSANGRKLLTNLQTR 531 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 +++ L R + +L IRHVG A++LA+ + S A+ +A VG Sbjct: 532 KDVPLWRVLVALSIRHVGPTAAQALARDFRSLDRIAEASEEELAAA----------DGVG 581 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 IA+++ E++ + VE E + +V TG+L+ R + Sbjct: 582 PTIARSVKEWFAVDWHRGVVEKWRAAGVRMADEGEDAGPGPLTGVAVVVTGSLRDHSRDQ 641 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A + + G V+ +S+KT ++VG +PGSK +KA Q+ I++++ F LL++ Sbjct: 642 AIAAIQERGGKVTGSVSKKTGFVVVGADPGSKYDKAVQVKAPILDDDGFRVLLEE 696 >gi|225155696|ref|ZP_03724184.1| DNA ligase (NAD(+)) [Opitutaceae bacterium TAV2] gi|224803490|gb|EEG21725.1| DNA ligase (NAD(+)) [Opitutaceae bacterium TAV2] Length = 761 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 236/784 (30%), Positives = 365/784 (46%), Gaps = 116/784 (14%) Query: 12 LSIEQAR--KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 ++ + + +++L E++ HD+ YY+ ++P I D +YD LKR + P L + Sbjct: 1 MTPAEPTPVQRIANLRAELARHDELYYRAARPEISDYDYDRLKRELANLESQHPQL---D 57 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD------- 122 + P +IG + +V H L+L+ ++ +LR+F R+ + K++ Sbjct: 58 LGDSPTLRIGDDRVEGFTRVRHRQAMLTLDNTYDEGELREFHVRVVKALSKENPPPPPPP 117 Query: 123 ----------------------------------DNSIFFTLEPKIDGTMITIRYEKGKF 148 D +I + +EPKIDG I++ YE GK Sbjct: 118 PPSPTTTATKPTEQLDLFAPVPSPPPPPLPPATFDANIAYIVEPKIDGVSISLTYEHGKL 177 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI------PEIIEVRGEVYISKNDFLALN 202 A RGDG G+DV+A ++ I +P L P +IE+RGE+++ + +F +N Sbjct: 178 TQAITRGDGTEGDDVTANVKTIHGLPHTLCHAPGTTTPLPALIEIRGEIFLREEEFRRIN 237 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF----------- 250 + G PYANPRN A+G L++L+PT +R L ++GLG Sbjct: 238 QQQEEAGDAPYANPRNLAAGTLKQLDPTLVASRRLEIVLYGLGACEPAVPPPPPSAPTDA 297 Query: 251 --AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q +++ G P + + + E+ +R T Y DG V K+D Sbjct: 298 LGFDSQTTYQRQLIAWGLPTVEKIWSVRGIDAVWTAIQELDRLRRTFAYATDGAVVKLDL 357 Query: 309 FSLQKQLGERARS------------PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 F+ QK LG R PRW + KF +A TRL I IQ+GRTG+LTPVA Sbjct: 358 FAQQKILGYRGADATGRAQEARKLSPRWACAFKFPPDRAKTRLRAITIQVGRTGVLTPVA 417 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 L+PV + G+ + ATLHN D I +D+R+ D VL+++AGE+IP V+++ Sbjct: 418 ELDPVLLAGSTVRRATLHNADEIAR-----------KDVRINDTVLIEKAGEIIPAVINV 466 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 IV +R PD+ P++FP CP C + VR A RC C + R+ HFV Sbjct: 467 IVEKRPPDSIPYAFPQNCPACNTPAVRIEGE------VAWRCLNP-HCPGKMRRRIAHFV 519 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 S+ +IEGLG++ ++ I+ D+F L R Q + G+ Sbjct: 520 SKACLDIEGLGREIVELLLDHN----LIKTIPDLFRLTREQL------LPLKKSGETWSG 569 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 NL ++I RR L R I LGI VGA A++LA+ + S A Sbjct: 570 NLINAIAARRTADLWRVIHGLGIPQVGAAAAKNLARAFRSLDALAAAT----------LP 619 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 L R+P G AQA+ +++ +P N + L + + + K +V TG Sbjct: 620 DLERLPDFGATTAQAVRDWFADPHNQELIADLQRAGLAPTPPAAAATNHPLAGKTIVLTG 679 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL + R +A E + G +S +S+KT ++ G GSKLEKAQ+LGV I++E FL Sbjct: 680 TLPTLTREQATEKIEAAGGKISTSVSKKTHYVLAGAEAGSKLEKAQKLGVPILDEAAFLQ 739 Query: 717 LLQQ 720 LL Sbjct: 740 LLDD 743 >gi|323126984|gb|ADX24281.1| NAD-dependent DNA ligase LigA [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 652 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 217/701 (30%), Positives = 353/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L + ++ + YY P + DSEYD L R + + +P+ + P Sbjct: 2 KKRIRELTELLNRYRQEYYTNDSPSVSDSEYDKLYRELVDLENQYPEHVLQ---DSPTQN 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 59 VGGTLLTGFDKYQHQYPLFSLQDAFSREELDAFDKRVK-----SEFPDATYLAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G+ A RGDG GE+++ ++ I IP L P I VRGE Y+S+ Sbjct: 114 SISLSYENGQLQVGATRGDGSVGENITENLKQIKDIP--QVLPQPLTITVRGEAYMSRQS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N+E G +ANPRNAA+G LR+L+ + + S Q + Sbjct: 172 FKAINEERQENGETEFANPRNAAAGTLRQLDTAVV-AKRQLATFLYQEASPTTRSQQDHV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+ + LGF VN +++ I + +++ R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LKALADLGFSVNQRHHLSSSMDEIWDFIQTVEAERDQLAYDIDGIVIKVNNLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L+PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLKPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+ ++ ++R + PS CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVSDKRQEQVPMWI-PSQCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 QS +V + A RC L C + L+HF SR+A NI GLG ++ F Sbjct: 399 QSDLVHFEDE------VALRCINPL-CPSLIQRGLEHFASRNAMNIAGLGPAVVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + ADI+ L + ++ G + S L +I ++ S E+ +F L Sbjct: 450 --LAGLVHDVADIYKLTKEDL------LHLDGIKEKSAEKLLAAIETSKSNSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRH+GA+ +R + + ++ + + +G +IA+++V+++Q Sbjct: 502 GIRHIGAKASRLILETCGDIEHLLTVRE----------EDIATIDGLGMVIAKSLVQYFQ 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 I VE L + + ++E+ +V TG L+K+ R+ A+ + LGA Sbjct: 552 QDSAILLVEELKNAGVNLAYLGQKIDSNAELFGLTVVLTGKLEKMTRNDAKAKLETLGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTD++I G + GSKLEKAQ LG++I EE L Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAQALGIRIEGEEWLEQL 652 >gi|307706499|ref|ZP_07643306.1| DNA ligase, NAD-dependent [Streptococcus mitis SK321] gi|307617954|gb|EFN97114.1| DNA ligase, NAD-dependent [Streptococcus mitis SK321] Length = 652 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 213/700 (30%), Positives = 357/700 (51%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K ++ L ++ + YY P + DSEYD L R + A+PD + + P +++ Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPDQVLA---DSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 60 GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKEVAHP-----TYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YEKG V A RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 115 ISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q ++L Sbjct: 173 DQVNQARQENGESEFANPRNAAAGTLRQLDTAVV-ATRNLATFLYQEASPSTRDSQEKVL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN A I ++ E+ R LPYDIDG+V KV++ + Q++LG Sbjct: 232 KHLEQLGFVVNPKRILAENIDEIWNFIQEVGEERENLPYDIDGVVIKVNDLASQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + + PS CP C Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRLSEEKL-DIPSHCPSCD 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S ++ + A RC C AQ +E L HF SRD NI GLG ++ F Sbjct: 400 SHLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDTMNITGLGPSIVEKLF--- 449 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A ++ ADI+ L+ + G + S + LY +I + S E+ +F LG Sbjct: 450 -AANLVKDVADIYRLKEEDF------LLLEGVKEKSASKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG++ ++ L +++ S +N AQ D + + +G +IA+++ ++ Sbjct: 503 IRHVGSKASQLLLQHFHSIENLAQA----------DSDEVASIESLGSVIAKSLQTYFAT 552 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + ++ L + + + + +V TG L++++R +A+ + LGA V Sbjct: 553 EGSEILLKELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKNKLESLGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KTD+++ G + GSKL+KAQ+LG+++ +E L Sbjct: 613 TGSVSKKTDLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652 >gi|242241743|ref|ZP_04796188.1| DNA ligase [Staphylococcus epidermidis W23144] gi|242234833|gb|EES37144.1| DNA ligase [Staphylococcus epidermidis W23144] Length = 665 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 241/708 (34%), Positives = 377/708 (53%), Gaps = 53/708 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ +K + L ++ + YY P + DSEYD L I +P+ + Sbjct: 1 MQDVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFK---STDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N EDLRKF RI + + E K Sbjct: 58 PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRDSIG-----QVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++YE G+FV RGDG +GED++ +R I IP + + EVRGE Y+ Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLN--FEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + F+ LN+E G +P+ANPRNAA+G LR+L+ R L+ F++ + +E A Sbjct: 171 PRRSFIHLNNEKEQNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L+++ LGF N + + G+++Y + S R +L YDIDG+V KV++ S Q Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRESLSYDIDGIVIKVNDLSQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +++G +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V++K+AG++IP+VV I++ R +++ + P+ Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++++ I+ ADIF L+ + G V NL +I K + SLE Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDL------LPLERMGKKKVDNLLLAIEKSKERSLEH 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + + + LI + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTES----------ELIEIQDIGDKLAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SE-IENKKLVFTGTLQKIQRHKAQE 668 V + +N +E L + + K K +V TG L+++ R++A E Sbjct: 553 VTYLENSDIRSLIEKLSNKNVNMSYKGIKTTEIDGHPDFSGKTIVLTGKLEQMTRNEASE 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 ++ GA V+ +++ TDI+I G + GSKL KA++ G +I E F+ Sbjct: 613 WLKMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFIE 660 >gi|76787534|ref|YP_329595.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae A909] gi|123771969|sp|Q3K1K8|DNLJ_STRA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|76562591|gb|ABA45175.1| DNA ligase, NAD-dependent [Streptococcus agalactiae A909] Length = 652 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 220/701 (31%), Positives = 360/701 (51%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ L ++ + YY P + DS+YD L R + P+ PN P ++ Sbjct: 2 ENRMNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEKQHPENIL---PNSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + + E KIDG Sbjct: 59 VGGLVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRVK-----AEFPTAAYMAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +++ Y G A RGDG+ GE+++ ++ + IP L L+ I VRGE Y+ K Sbjct: 114 SVSLTYVNGVLQVGATRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYLPKES 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N E A G + +ANPRNAA+G LR+LN + + S + Q ++ Sbjct: 172 FEAINIEKRANGEQEFANPRNAAAGTLRQLNTGIV-AKRKLATFLYQEASPTQKETQDDV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+++ GF VN+ +++ I + ++ R +LPYDIDG+V KV+ ++Q++LG Sbjct: 231 LKELESYGFSVNHHRLISSSMEKIWDFIQTIEKDRVSLPYDIDGIVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+++++++R+ P CP C Sbjct: 351 YI-----------AEKDIRIGDTVVVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +V A RC L C Q ERL HF SRDA NI G G ++ F Sbjct: 399 GSELVHFEGE------VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVEKLFD- 450 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A I ADI+ L S + + G + S T +Y +I + S E+ +F L Sbjct: 451 ---AHLIADVADIYRL------SIENLLTLDGIKEKSATKIYHAIQSSKENSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ +R L + + + + +Q S+ + +G +IA+++ F++ Sbjct: 502 GIRHVGSKASRLLLEEFGNLRQLSQASQ----------ESIASIDGLGGVIAKSLHTFFE 551 Query: 618 NPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 +E L V+ + + +++ +V TG L+K+ R++A+E + LGA Sbjct: 552 KEEVDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEKLQNLGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTD+I+ G + GSKL KAQ LG+ I +E+ L L Sbjct: 612 VTGSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 652 >gi|303239321|ref|ZP_07325849.1| DNA ligase, NAD-dependent [Acetivibrio cellulolyticus CD2] gi|302593107|gb|EFL62827.1| DNA ligase, NAD-dependent [Acetivibrio cellulolyticus CD2] Length = 663 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 221/706 (31%), Positives = 349/706 (49%), Gaps = 46/706 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +K + L + I YH+D YY I D EYD L + P+LA + N P Sbjct: 2 DIKKRIEELRKTIEYHNDRYYNQDDAEISDYEYDQLSLELRKLEQEHPELALT---NSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+GG L KV H +P +SL+ +++ E++ F+ ++ + F +E KID Sbjct: 59 QKVGGTAKRELRKVQHDVPVISLQDVFSKEEVYSFVNKMIQELG-----DPTFVVERKID 113 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + +RY G V RGDG GE V + I +IPR + +P + EVRGEVY+S Sbjct: 114 GLSVVLRYNDGNLVEGITRGDGLVGESVYENLLEIQSIPRTIPTKLPYL-EVRGEVYMSA 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254 F N + G K Y RN A+G LR+L+P R L+ +V L Sbjct: 173 EAFEKANRKQEETGGKIYQTARNLAAGSLRQLDPGIVRERNLDIYVFNLEICQGKDFSSH 232 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + GFP++ T + +++ R L + IDG V KVD +K+ Sbjct: 233 SESLNWLSTQGFPISPEFMICKTADEVWECISKIGETRWQLSFGIDGAVVKVDSLDDRKR 292 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++ PRW ++ K+ +Q T + DI +Q+GRTG LTP+A L+PV I G ++ ATLH Sbjct: 293 LGITSKVPRWAVAFKYPPEQKETVVEDIKVQVGRTGRLTPLAILKPVKIAGTTVSRATLH 352 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N+DYI +DI++GD V++++AG++IP+V+ I +R A+ + P C Sbjct: 353 NQDYIDS-----------KDIQIGDTVIIQKAGDIIPEVLKSIPEKRPDTAKRYIIPDKC 401 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C + +R+ + + G AC AQ + + +F S+DA NIEG G ++ Sbjct: 402 PMCGAPALREEDGVEIR-------CTGSACFAQAIRGVIYFASKDAMNIEGFGPSSVEAL 454 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 I+ ADI+ L+ + TK + S+ NL +I K ++ ++R I Sbjct: 455 MSE----GYIKDVADIYLLKDSRDELITKGI---VGKEKSIDNLLKAIEKSKDNDIDRLI 507 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 GIR+VG + AR LA + ++ + LI +P GDI+ + I+E Sbjct: 508 TGFGIRNVGKQTARVLAANFQDIESLENAT----------YDQLIVLPDFGDIMVKDILE 557 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+ N+ + L + + + N K V TGTL + R +A E + Sbjct: 558 FFSKSENLLLISKLKQVGINMLSKASVNKKDDRFSGKTFVLTGTLPSMTREEATELIQMH 617 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G VS +S++T ++ G++ GSKL KAQ+LGV+++ EE+ +L Sbjct: 618 GGKVSGSVSKRTSYVLAGEDAGSKLAKAQELGVQVIGEEELKNMLN 663 >gi|227432449|ref|ZP_03914436.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351770|gb|EEJ42009.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 680 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 238/717 (33%), Positives = 376/717 (52%), Gaps = 51/717 (7%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 PIE L+ + A++E + L++++ + YY+ P++ D YDAL R A+ FP Sbjct: 3 PDFTPIEKLTTQDAQQETARLQKQLVQYGTAYYEDDAPLVEDYIYDALYARLVALEEKFP 62 Query: 64 DLARSEDPNGPLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P+ P +G + L KV H P LSL ++++++L + R + Sbjct: 63 QYVI---PDSPTQNVGSADTKSELQKVVHPAPMLSLGDVFSLDELNDWDARTTKSLG--- 116 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 N + LE KIDG + + Y G+ V A+ RG+G GEDV+A ++ I IP+ L+ + Sbjct: 117 -NQAPYNLELKIDGLAVALTYVNGQLVQASTRGNGIVGEDVTANVKTIKAIPKKLTEPL- 174 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 IEVRGE+Y+ K F ALN + A G +P+ANPRNAA+G LR+LN +R L FV+ Sbjct: 175 -TIEVRGEIYMPKASFAALNKQREADGLEPFANPRNAAAGSLRQLNVKITKSRNLAAFVY 233 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 + + Q L++ LG P + R N I Y +E S R +L Y IDG Sbjct: 234 YTAEPEMLGVTTQSGALERFAELGLPTDTHNRVINKMTDIAGYIDEYTSERESLSYGIDG 293 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V KV++ LQ LG + PRW I++KF ++A T + DI+ +GRTG +TP A ++PV Sbjct: 294 VVVKVNQLDLQFDLGNTVKIPRWAIAYKFPPEEALTTVRDIEWTVGRTGAVTPTAVMDPV 353 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G + A+LHN DY++ +DI++GD V + +AG++IP++ +I+ +R Sbjct: 354 LLAGTTVQRASLHNPDYLR-----------EKDIQIGDTVTLHKAGDIIPEIGQVILEKR 402 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 D++ + P+ CP C+S +V A RC CSAQ E L HF SR+A Sbjct: 403 PTDSETYQVPTICPACESNLVHIEGE------VALRCINPF-CSAQIQEGLTHFASRNAM 455 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 NI+G+G + + K A I+ A I+ + Q + + F + S L D+ Sbjct: 456 NIDGMGPRVVGQLLK----AGYIKDVASIYRITVEQLLT------LDKFQEKSAVKLIDA 505 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 IN + SLER +F LGIR VGA+ AR +A+ + + ++ + + Sbjct: 506 INSSKENSLERLLFGLGIRMVGAKAARLIAEKFRTLSAVSEA----------SVEDIANI 555 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQ 659 +G IAQ+IV+++ P + + L + + +S KK+V TG L+ Sbjct: 556 NGIGHTIAQSIVQYFSTPESKQLLVELASSGVNQSYLSDTVIDENSFFYGKKVVLTGKLE 615 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + R A +++ GA V+ +S KTD++I G+ GSKL+KA QLGV + E+QF+ Sbjct: 616 QSSRPAATKWLQDHGANVAGSVSVKTDLVIAGEAAGSKLDKASQLGVTVWTEQQFVD 672 >gi|22537014|ref|NP_687865.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae 2603V/R] gi|81454504|sp|Q8E084|DNLJ_STRA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|22533870|gb|AAM99737.1|AE014230_17 DNA ligase, NAD-dependent [Streptococcus agalactiae 2603V/R] Length = 652 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 220/701 (31%), Positives = 360/701 (51%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ L ++ + YY P + DS+YD L R + P+ PN P ++ Sbjct: 2 ENRMNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEKQHPENIL---PNSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + + E KIDG Sbjct: 59 VGGLVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRVK-----AEFPTAAYMAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +++ Y G A RGDG+ GE+++ ++ + IP L L+ I VRGE Y+ K Sbjct: 114 SVSLTYVNGVLQVGATRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYLPKES 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N E A G + +ANPRNAA+G LR+LN + + S + Q ++ Sbjct: 172 FEAINIEKRANGEQEFANPRNAAAGTLRQLNTGIV-AKRKLATFLYQEASPTQKETQDDV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+++ GF VN+ +++ I + ++ R +LPYDIDG+V KV+ ++Q++LG Sbjct: 231 LKELESYGFSVNHHRLISSSMEKIWDFIQTIEKDRVSLPYDIDGIVIKVNSIAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+++++++R+ P CP C Sbjct: 351 YI-----------AEKDIRIGDTVVVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +V A RC L C Q ERL HF SRDA NI G G ++ F Sbjct: 399 GSELVHFEGE------VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVEKLFD- 450 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A I ADI+ L S + + G + S T +Y +I + S E+ +F L Sbjct: 451 ---AHLIADVADIYRL------SIENLLTLDGIKEKSATKIYHAIQSSKENSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ +R L + + + + +Q S+ + +G +IA+++ F++ Sbjct: 502 GIRHVGSKASRLLLEEFGNLRQLSQASQ----------ESIASIDGLGGVIAKSLHTFFE 551 Query: 618 NPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 +E L V+ + + +++ +V TG L+K+ R++A+E + LGA Sbjct: 552 KEEVDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEKLQNLGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTD+I+ G + GSKL KAQ LG+ I +E+ L L Sbjct: 612 VTGSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 652 >gi|323697702|ref|ZP_08109614.1| DNA ligase, NAD-dependent [Desulfovibrio sp. ND132] gi|323457634|gb|EGB13499.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans ND132] Length = 684 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 234/718 (32%), Positives = 380/718 (52%), Gaps = 57/718 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E + ++ L Q+I +H+ YY P I D E+D L R A+ P+L +DP Sbjct: 1 MVPESVAERVAELRQKIDHHNYRYYVLDDPEISDQEFDVLFRELAALEAEHPEL---DDP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++GGE H++ SL+ +++ F R+ + + D + + + Sbjct: 58 NSPTRRVGGEPASGFTPYEHALRLYSLDNAMDLDAWYAFHERVAKGVGRAD---VAYWAD 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190 PK+DG + + YE G++V AA RGDG GEDV+A +R + +P L + PE++EVRGE Sbjct: 115 PKMDGLALEVIYENGRYVRAATRGDGLVGEDVTANMRTVMNLPLSLHGDDVPELLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEI 249 V ++ DF ALN G K +ANPRNAA+G +R+L+P F +G+G+ Sbjct: 175 VVMANRDFAALNARQEEKGEKVFANPRNAAAGTIRQLDPKVAASRPLRFMAYGVGRVEWP 234 Query: 250 ----FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 Q +++ +R LGF + V+ + + Y+ ++ +IR+TLP++IDG+V K Sbjct: 235 GRASDWATQQALMEGLRDLGFAIPPDVKLCASAKAVADYFQQLGAIRATLPFEIDGMVAK 294 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ +Q+ LG AR+PRW ++ KF Q TRL I +Q+GRTG+LTPVA LEPV + G Sbjct: 295 VNDREMQEALGYTARAPRWALALKFPAHQTRTRLNAIRVQVGRTGVLTPVAELEPVELAG 354 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHN+ YI RD+RVGD VL++RAG+VIP+V+ + +R +A Sbjct: 355 VVVSNATLHNKGYI-----------AERDLRVGDTVLIQRAGDVIPQVLSADLEQRPENA 403 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 +PF FP CP+C+S + CT AC A+ ++RL HFVS+ ++EG Sbjct: 404 EPFVFPMVCPVCESPA--------VEDGERVVCTNP-ACPAKTVQRLIHFVSKAGMDMEG 454 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 +GKQ + + + AD+FTL++ G GD S N +I K Sbjct: 455 VGKQWVRKLAED----GVLNSAADLFTLKKTDLLKYG------GMGDKSAENFLKAIEKA 504 Query: 546 RNISL-ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + + R + LGIRH+G + AR+LA + + L + + Sbjct: 505 KAEAPLWRLVAGLGIRHIGEQAARTLAARFKNLDELFGAT----------LDDLTGLDGI 554 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKI 661 GD++A+++++F + N ++ + G E + + K +FTGTL I Sbjct: 555 GDVMAESVLDFRVDAANREMIDRFRELGVWPEGGAPAEEPSDELPLAGKVFIFTGTLP-I 613 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +A V G + +S+K D ++ G+ GSK+ KA++LG+++++ + F LL+ Sbjct: 614 SRDEAWAMVEARGGIPVKSISKKVDYVVAGEKAGSKIAKAEKLGLEVIDFDAFKALLE 671 >gi|114565926|ref|YP_753080.1| DNA ligase (NAD(+)) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318951|sp|Q0AZZ5|DNLJ_SYNWW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|114336861|gb|ABI67709.1| DNA ligase (NAD(+)) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 661 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 225/715 (31%), Positives = 362/715 (50%), Gaps = 70/715 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + L +E+ HD YY P+I DS YD L + + +P + + P Sbjct: 2 EVSSRIKELREEMQKHDYHYYILDAPLISDSGYDRLMQELKKLEEEYPQYITA---DSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++ G+ + V H P LSL+ ++ +DL +F RI R + ++ + E KID Sbjct: 59 QRVAGKASEKFSPVRHRFPLLSLDNAFSYQDLLEFDRRIGRVAR-----TLSYMAELKID 113 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I + YE G + AA RGDG GEDV+A IR I TIP L + +EVRGEV++ K Sbjct: 114 GVSIALVYENGVLLNAATRGDGLVGEDVTANIRTIKTIPLRLR-HSLPRLEVRGEVFMPK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 +F+ LN+E G + +ANPRNAA+G LR+L+P R L+ FV+ + Q Sbjct: 173 QEFIRLNEEKEEKGERVFANPRNAAAGSLRQLDPRVTAGRALSAFVYDIIYMEGQTLAEQ 232 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E M+ LG PVN VR + ++++ E R LPY+IDG+V K++ + +++ Sbjct: 233 QEAWHFMQELGLPVNPEVRFCADINAVLAFTEEYAEKRHELPYEIDGVVVKLNTLAEREE 292 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ARSPRW +++KF ++ TRLL ++I +GRTGI+ P A LEPV + G ++ A++H Sbjct: 293 LGATARSPRWAMAYKFPAEEKETRLLGVEINVGRTGIIAPTALLEPVFLAGTTVSRASMH 352 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D IK +D+R+GD VL+ +AG++IP+++ + +R + + + P C Sbjct: 353 NFDLIK-----------EKDLRIGDMVLLHKAGDIIPEIIASLPEKRSGEERVITPPENC 401 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S+V R + + C A+ E L F SR A +I+GLG ++ Sbjct: 402 PACDSKVARFAGEVAYR-------CENINCPARLKESLIFFASRGAMDIDGLGSAVIEQL 454 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + ++ D++ L+ + T+ + G S NL +IN+ ++ L R + Sbjct: 455 VNKD----MVKRIDDLYRLREEEITA------LERMGPKSAANLIKAINESKSRPLSRLL 504 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGIRH+GA A+ L+++ +F + +L +P +G +A+++V Sbjct: 505 TALGIRHIGARSAKILSRHIHDIDDFYKL----------GVENLTSIPEIGPKMAESMVN 554 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F+ PRN +E L + + ++ K V TGTL + R +A E + G Sbjct: 555 FFAEPRNRETIEDLKDLGVNTREEAIEAGEQLLQGKTFVLTGTLPSLTRQQASEMIESRG 614 Query: 675 A-----------VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++ GD+PGSKL+KA QL + I++E FL LL Sbjct: 615 GKVSSSVSKKTS-----------YVVAGDDPGSKLDKALQLELTILDEAGFLNLL 658 >gi|313896259|ref|ZP_07829812.1| DNA ligase (NAD+) [Selenomonas sp. oral taxon 137 str. F0430] gi|312975058|gb|EFR40520.1| DNA ligase (NAD+) [Selenomonas sp. oral taxon 137 str. F0430] Length = 672 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 219/711 (30%), Positives = 351/711 (49%), Gaps = 44/711 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 I+ + EL+ L ++I + YY + I D E+D L R AI +P+L N Sbjct: 3 DIQMVKAELAELRRQIRRYSKQYYDDNASDISDYEFDQLMLRLKAIEAEYPELI---TKN 59 Query: 73 GPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P K+GG + V H +P LSL+ +++ ++R F+ I + F +E Sbjct: 60 SPTQKVGGSAQRTAGVLVKHDVPMLSLQDVFSEAEIRDFVAGIR-----AHFPAAEFVVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHS-GEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 KIDG + +RYE G A RGDG GEDV+ R I + LS EVRGE Sbjct: 115 EKIDGLSLALRYENGVLARAVTRGDGIVQGEDVTENARMIADVREQLSDAPVY-FEVRGE 173 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VY+ + F A+N+ +G KP+ANPRN A+G LR+L+ R L+ FV L +T Sbjct: 174 VYMERAAFAAVNERQELLGLKPFANPRNCAAGTLRQLDARVTRERRLSMFVFNLQRTEGR 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 MR G + G R T + + E+ + R +LPYDIDG V KV++F Sbjct: 234 TFASHTASYDFMRAQGIKIIAGYRVCRTADEVWAAIEEIGARRGSLPYDIDGAVVKVNDF 293 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 S + +LG A++PRW I++K+ ++ T L +I++ +GRTG +TP A +PV + G + Sbjct: 294 SQRAELGATAKAPRWAIAYKYPPEEKETVLREIELSVGRTGRITPTAVFDPVQLCGTRVE 353 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN+DYI GL D+R+GD +LV ++GE+IP+V +++ +R P+ Sbjct: 354 RATLHNQDYIAGL-----------DVRIGDTILVYKSGEIIPRVKAVVLEKRPASTVPYV 402 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 CP+C VR+ + A +C + C AQ + HFVSR A +I+G G Sbjct: 403 IGDTCPVCGEPAVREAD------TADMKCQNPV-CPAQVENHILHFVSRTAMDIKGFGTS 455 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + A + ADI+TL + + + + +V L D++ + + Sbjct: 456 AVIALTH----AGYLHDIADIYTLHQHRDELISSGII---GREKTVDKLLDAVAHSKENT 508 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +R + LGI +G A SL + + S A+ D ++ VP +G++ A Sbjct: 509 PDRLLTGLGIAGIGRAAAISLMQEFPSVDALAEA-------ARGDAEKILAVPDMGEVSA 561 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +++ EF+ + +E + + + +E K V TGTL + R + Sbjct: 562 RSLAEFFDSEAGRGLLEKFRAAGVNFVSAPRERTGTALEGKSFVITGTLPTLSREECAAL 621 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +T G V +S+KTD ++ G+ GSKL KA+ LGV +++E ++++ Sbjct: 622 ITAHGGTVKGSVSKKTDYLVAGEAAGSKLAKAEFLGVPVLDEAALRRMIEE 672 >gi|312865342|ref|ZP_07725570.1| DNA ligase (NAD+) [Streptococcus downei F0415] gi|311099453|gb|EFQ57669.1| DNA ligase (NAD+) [Streptococcus downei F0415] Length = 673 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 207/706 (29%), Positives = 346/706 (49%), Gaps = 51/706 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 ++ + L +++ + YY P + D++YD L R + A P+L ++ + Sbjct: 18 NVSAMENRMKELVDQLNRYAKEYYTQDNPSVSDAQYDKLYRELVDLEKAHPELVQA---D 74 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +++GG + K TH P SL+ ++ E+L F R+ + S + E Sbjct: 75 SPTHRVGGLVLDGFEKYTHEYPLFSLQDAFSREELDDFDRRVK-----AEFPSASYLAEL 129 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG I++ Y G+ A RGDG GE+++ ++ I IP L+ I VRGE Y Sbjct: 130 KIDGLSISLTYVNGQLQIGATRGDGTVGENITENLKRIQDIPLSLAGGQ--TITVRGEAY 187 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + + F A+N + G+ +ANPRNAA+G LR+L+ + + E Sbjct: 188 LPRASFEAINAKRREEGQDEFANPRNAAAGTLRQLDTAVV-AQRKLATFIYQEAGETDFP 246 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q +L+ +GF VN ++ I + +++ R L YDIDG+V KV+ ++Q Sbjct: 247 TQEAVLEGFADMGFVVNPRRIVTSSMDEIWDFIQAVQADRDNLAYDIDGIVIKVNSLAMQ 306 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG ++PRW I++KF ++ +++ +D +GRTG++TP A L PV + G ++ AT Sbjct: 307 EELGFTVKAPRWAIAYKFPAEEKEAKIISVDWTVGRTGVVTPTANLSPVQLAGTTVSRAT 366 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN DYI +DIR+ D V+V +AG++IP V+++++ +R P P Sbjct: 367 LHNVDYI-----------ADKDIRLDDTVVVYKAGDIIPAVLNVVMAKRQK-QLPMEIPE 414 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C SR+V + A RC C AQ E+L HF SRDA NI GLG Sbjct: 415 TCPSCYSRLVHYEDE------VALRCVNPR-CPAQLKEKLIHFASRDAMNITGLGPS--- 464 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + A I+ AD++ L + + G + S LY +I + S E+ Sbjct: 465 -LIEKVYQAGLIQDVADLYQLTVADLLT------LEGVKEKSAAKLYQAIQASKENSAEK 517 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRHVGA+ ++ L + + S + ++ + +G +IAQ++ Sbjct: 518 LLFGLGIRHVGAKASKQLLEKFGSLGQLMSA----------KFEAIADIDGLGAVIAQSL 567 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 +++ + L + + + +V TG L + R +A+E + Sbjct: 568 QDYFATDGAKQLMRELQEAGLNFDYLGKRVTEDAALSGMTVVLTGKLVSLTRSQAKEKLE 627 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 LGA V+ +S+ TD+++ G + GSKL KAQ+LG+ I +E+ L Sbjct: 628 TLGAKVTGSVSKNTDLVVAGTDAGSKLTKAQELGITIQDEDWLANL 673 >gi|320529157|ref|ZP_08030249.1| DNA ligase, NAD-dependent [Selenomonas artemidis F0399] gi|320138787|gb|EFW30677.1| DNA ligase, NAD-dependent [Selenomonas artemidis F0399] Length = 672 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 218/711 (30%), Positives = 349/711 (49%), Gaps = 44/711 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 I+ + EL+ L ++I + YY + I D E+D L R AI +P+L N Sbjct: 3 DIQAVKAELAELRRQIRRYSKQYYDDNASDISDYEFDQLMLRLKAIEAEYPELI---TKN 59 Query: 73 GPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P K+GG + V H +P LSL+ +++ ++R F+ I + F +E Sbjct: 60 SPTQKVGGSAQRTAGVLVKHDVPMLSLQDVFSEAEIRDFVAGIC-----AHFPAAEFVVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHS-GEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 KIDG + +RYE G A RGDG GEDV+ R I + LS EVRGE Sbjct: 115 EKIDGLSLALRYENGVLARAVTRGDGIVQGEDVTENARMIADVREQLSDAPVY-FEVRGE 173 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VY+ + F A+N+ +G KP+ANPRN A+G LR+L+ R L+ FV L +T Sbjct: 174 VYMERAAFAAVNERQELLGLKPFANPRNCAAGTLRQLDARVTRERRLSMFVFNLQRTEGR 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 MR G + G R T + + E+ + R +LPYDIDG V KV++F Sbjct: 234 TFASHTASYDFMRAQGIKIIAGYRVCRTADEVWAAIEEIGARRGSLPYDIDGAVVKVNDF 293 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 S + +LG A++PRW I++K+ ++ T L +I++ +GRTG +TP A +PV + G + Sbjct: 294 SQRAELGATAKAPRWAIAYKYPPEEKETVLREIELSVGRTGRITPTAVFDPVQLCGTRVE 353 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN+DYI GL D+R+GD +LV ++GE+IP+V +++ +R P+ Sbjct: 354 RATLHNQDYIAGL-----------DVRIGDTILVYKSGEIIPRVKGVVLEKRPASTVPYV 402 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 CP+C + VR+ + A +C + C AQ + HFVSR A +I+G G Sbjct: 403 IGDTCPVCGAPAVREAD------TADMKCQNPV-CPAQVENHILHFVSRTAMDIKGFGTA 455 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + A + ADI+TL + + +V L D+I + Sbjct: 456 AVIALTH----AGYLHDIADIYTLYEHRDELIASGII---GREKTVDKLLDAIAHSKENP 508 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +R + LGI +G A SL + + S A+ D ++ VP +G++ A Sbjct: 509 PDRLLTGLGIAGIGRAAAISLMQEFPSVDALAEA-------ARGDAEKILAVPDMGEVSA 561 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +++ EF+ + + +E + + + +E K V TGTL + R + Sbjct: 562 RSLAEFFGSEASRGLLEKFRAAGVNFVSAPRERTGTALEGKSFVITGTLPTLSREECAAL 621 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +T G V +S+KTD ++ G+ GSKL KA+ L + +++E ++++ Sbjct: 622 ITAHGGTVKGSVSKKTDYLVAGEAAGSKLAKAESLDIPVLDEAALRRMIEE 672 >gi|307704876|ref|ZP_07641768.1| DNA ligase, NAD-dependent [Streptococcus mitis SK597] gi|307621589|gb|EFO00634.1| DNA ligase, NAD-dependent [Streptococcus mitis SK597] Length = 652 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 212/700 (30%), Positives = 356/700 (50%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K ++ L ++ + YY P + DSEYD L R + A+PD + + P +++ Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPDQVLA---DSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 60 GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKEVAHP-----TYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YEKG V A RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 115 ISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q ++L Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKVL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN A + I ++ E+ R LPYDIDG+V KV++ + Q++LG Sbjct: 232 KHLEQLGFVVNPKRILAESMDEIWNFIQEVGEERENLPYDIDGVVIKVNDLAGQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRFSEEKL-DIPTNCPSCD 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S ++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A ++ ADI+ L+ + G + S LY +I + S E+ +F LG Sbjct: 450 -AANLVKDVADIYRLKEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG++ ++ L +++ S + AQ D + + +G +IA+++ ++ Sbjct: 503 IRHVGSKASQLLLQHFHSIETLAQA----------DPEEVASIESLGGVIAKSLQTYFAT 552 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + + L + + + + +V TG L++++R +A+ + LGA V Sbjct: 553 EGSEILLRELREAGVNLAYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KTD+++ G + GSKL+KAQ+LG+++ +E L Sbjct: 613 TGSVSKKTDLVVAGADAGSKLQKAQELGIEVRDEVWLESL 652 >gi|317125504|ref|YP_004099616.1| DNA ligase, NAD-dependent [Intrasporangium calvum DSM 43043] gi|315589592|gb|ADU48889.1| DNA ligase, NAD-dependent [Intrasporangium calvum DSM 43043] Length = 715 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 218/735 (29%), Positives = 352/735 (47%), Gaps = 56/735 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 IE ++ E + L + S Y+ P I D+EYD L RR +A+ +P L Sbjct: 9 AIEDAIPDEVHHEWADLAERASAAQFAYHVKDAPTISDAEYDGLIRRLNALEAQWPSL-- 66 Query: 68 SEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P+ P K+G V H LSL+ ++ E+LR + R+ R Sbjct: 67 -RTPDSPTQKVGASAFATGFETVDHLERMLSLDNAFSFEELRAWAERVEREVGAGAH--- 122 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEII 185 F E KIDG + + YE+G+ V A RGDG +GEDV+ +R I +P LS + PE++ Sbjct: 123 -FLTELKIDGLAVNLLYEQGRLVRALTRGDGRTGEDVTNNVRTIEGVPERLSGDDVPELV 181 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 E+RGEV+ F LN ++A G+ P+ANPRNAA+G LR+ +P R L VHG+G Sbjct: 182 EIRGEVFFPTAGFADLNAALVAAGKAPFANPRNAAAGSLRQKDPKVTAGRPLRLLVHGIG 241 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 Q E +R G P ++ V+ + + + R ++IDG+V Sbjct: 242 ARRGFDIARQSEGYAALRSWGLPTSDQVKVLDDIADVEEFVTFHGEHRHDGLHEIDGIVV 301 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVDE +LQ+QLG +R+PRW I+ K+ ++ +TRLLDI + +GRTG +TP ++PV + Sbjct: 302 KVDEVTLQRQLGATSRAPRWAIAFKYPPEEVNTRLLDIRVNVGRTGRVTPYGVMQPVVVA 361 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G+ + ATLHN+ ++ + + +GD V++++AG+VIP++V +V+ R Sbjct: 362 GSTVEQATLHNQHEVER-----------KGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGS 410 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +PF P+ CP C +++ + + RC +C +Q ER+ SR A +IE Sbjct: 411 ERPFVMPTQCPSCGTQLAPE-----KEGDKDIRCPNSRSCPSQLRERVFALASRSALDIE 465 Query: 485 GLGKQQLDFFFKSE---DPAFSIRIPADI-----------------FTLQRRQQTSTTKI 524 LG + +S D P D + ++T Sbjct: 466 ALGWEGSIALLESGILTDEGDLFAPPEDSPEAGAYGVTRERLAAVGLYTRAAKRTDDPAH 525 Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 + L + K + L R + +L IRHVG AR+LA + S + Sbjct: 526 VVDGRVLSANGEKLLAELEKAKTQPLWRVLVALSIRHVGPTAARALATTFGSMDAIRRA- 584 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 L VG IIA+++ ++ + V + +V+ Sbjct: 585 ---------SIEELAEAEGVGQIIAESVTAWFAVDWHAEIVRKWAAARVRMEDEVDASVA 635 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 +E + +V TG+L+ R + +E + G + +SRKTD ++VG N GSK KA++L Sbjct: 636 RTLEGRTVVVTGSLEGFSRDETKEAILSRGGKAAGSVSRKTDWVVVGANAGSKAAKAEEL 695 Query: 705 GVKIMNEEQFLFLLQ 719 G+++++E QF+ LL+ Sbjct: 696 GLRVLDEAQFVRLLE 710 >gi|116630136|ref|YP_815308.1| NAD-dependent DNA ligase [Lactobacillus gasseri ATCC 33323] gi|122272927|sp|Q041K2|DNLJ_LACGA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116095718|gb|ABJ60870.1| NAD-dependent DNA ligase [Lactobacillus gasseri ATCC 33323] Length = 668 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 210/715 (29%), Positives = 363/715 (50%), Gaps = 50/715 (6%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + L+ QA +++ L +++ + YY P++ D+ YD + + FPDL S Sbjct: 1 MAVLTHNQASQKVDELRKKLDEWAEDYYAKDAPVVEDAVYDKAYQELVELEKQFPDLVTS 60 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + ++GGE+ L KV H +P LS+ +++ ++L++F RI + + + + Sbjct: 61 ---DSITQRVGGEIKSDLSKVEHPVPMLSMGDVFSKDELKEFDERITKLVG----HPVAY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ Y GK A+ RG+G GEDV+A + I IP+ L + EVR Sbjct: 114 NVELKIDGLSLSLEYTAGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPEPL--TTEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+ K F LN E G + +ANPRNAA+G LR+L+ + Sbjct: 172 GECYMEKEAFAKLNAERDEKGEQVFANPRNAAAGSLRQLDARITKKRNLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ + +M LGF N ++ + + + +E + R+ L Y IDG+V KVD+ Sbjct: 232 KNITSQHQAIDEMNRLGFHTNQTGQRLESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 SLQ +LG + PRW I++KF ++ T + +I+ +GRTG++TP A ++PV + G ++ Sbjct: 292 LSLQNELGNTVKVPRWEIAYKFPPEEQETVVKEIEWTVGRTGVVTPTAVMDPVQLAGTVV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN DY++ + +R+GD V + +AG++IP++ +++N+R D++P+ Sbjct: 352 SRASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLNKRPKDSEPY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C +V + A RC + C AQ E + HF SR A NI GLG Sbjct: 401 QIPNKCPSCGQDLVHLQDE------VALRCINPM-CPAQVEEGIIHFASRGAMNIMGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + AD++ L Q + + F D S+TNL SI + Sbjct: 454 RIVKQLIDKN----FVNDVADLYHLTNEQLS------QLDHFKDKSITNLLTSIENSKQN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S E +F LGI HVGA+ AR + + Y + + +Q L + +G+ I Sbjct: 504 SAELLLFGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIGETI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A+++ ++ P ++ L E+ + + K +V TG L R + Sbjct: 554 AESLTAYFNQPSAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKLSDFTRSE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + LGA V+ +S+KTD +I G + GSK +KA++L V ++ E++ + +++ Sbjct: 614 FTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKIEK 668 >gi|300933643|ref|ZP_07148899.1| NAD-dependent DNA ligase LigA [Corynebacterium resistens DSM 45100] Length = 680 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 206/722 (28%), Positives = 343/722 (47%), Gaps = 58/722 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + L E+ H + YY Y P I D+++DAL + + P+L Sbjct: 1 MTTSE--NRWQELADEVRLHRERYY-YGDPTISDADFDALLAQLRTLEDEHPELVTGP-- 55 Query: 72 NGPLNKIGGEM--NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 PL ++ + V H LSL+ +++ L ++ R + + Sbjct: 56 -SPLTEVAPTPPTSSPFRNVDHRERMLSLDNVFDGAQLESWLERT---------PADTYL 105 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEII 185 E KIDG I + Y G+ A RGDG +GED++ + + IP+ L +PE++ Sbjct: 106 TELKIDGASINLLYVNGELELALTRGDGTTGEDITHNAKTLDDIPQKLKGTEEFPVPELV 165 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLG 244 EVRGEV+I+ DF +N + A G K +ANPRNAA+G +R+ N R L HG+G Sbjct: 166 EVRGEVFITVEDFATMNAQRQAEGLKMFANPRNAAAGAMRQKNAEDTAKRPLRLICHGIG 225 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + Q+E Q + G PV+ +Q ++ +V R +++DG+V Sbjct: 226 AREGFTPQSQHEAYQAIAAWGLPVSPYTKQVHSAKEVVEQVTYWGEHRHDAAHEMDGVVI 285 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD S Q +LG +R+PRW I++K+ ++A T L +I I IGRTG TP A +EP + Sbjct: 286 KVDSLSEQLELGATSRAPRWAIAYKYPPEEAVTTLRNIRIGIGRTGRATPYAVMEPKYVA 345 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G+ +T ATLHN + + +GDR+++++AGEVIP+V+ + +ER Sbjct: 346 GSTVTMATLHNPTEAHR-----------KGVMLGDRIMIRKAGEVIPEVLGPVEDERTGK 394 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +PF + S CP C + + + + A RC +C Q RL + R AF+I+ Sbjct: 395 ERPFIYSSICPECGTVLA-----PSKEGDADWRCPNTRSCPGQLHTRLTYLSGRGAFDID 449 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 LG++ S + + +F L+++ TT G + + L + + Sbjct: 450 ALGERAAYDLINS----GVLSDESGLFNLKKQDLERTTAYSTKAGSLNKAGETLLEKLES 505 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + + L R I +L IRH G A++LA +Y S + + V Sbjct: 506 AKQVDLWRVIVALSIRHAGPTAAKALAAHYHSIAAIQGA----------SVEEMSTIEGV 555 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK------NVSSEIENKKLVFTGTL 658 G+IIAQ+I +++ + V + + + ++ +V TGTL Sbjct: 556 GEIIAQSIADWFTVDWHRNIVNSWSTAGVRMEEEVPEKSEEDLAQAKLLDGLTIVVTGTL 615 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R A+E + G + +S+KT ++ G+ GSKL KA+ LGV ++NE+QF+ LL Sbjct: 616 ENFDRDGAKEAIEARGGKAAGSVSKKTSFLVAGEKAGSKLTKAEDLGVPVLNEQQFVELL 675 Query: 719 QQ 720 ++ Sbjct: 676 EK 677 >gi|116617684|ref|YP_818055.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122272115|sp|Q03YP0|DNLJ_LEUMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116096531|gb|ABJ61682.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 680 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 238/717 (33%), Positives = 376/717 (52%), Gaps = 51/717 (7%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 PIE L+ + A++E + L++++ + YY+ P++ D YDAL R A+ FP Sbjct: 3 PDFTPIEKLTTQDAQQETARLQKQLVQYGTAYYEDDAPLVEDYIYDALYARLVALEEKFP 62 Query: 64 DLARSEDPNGPLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P+ P +G + L KV H P LSL ++++++L + R + Sbjct: 63 QYVI---PDSPTQNVGSADTKSELQKVVHPAPMLSLGDVFSLDELNDWDARTTKSLG--- 116 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 N + LE KIDG + + Y G+ V A+ RG+G GEDV+A ++ I IP+ L+ + Sbjct: 117 -NQAPYNLELKIDGLAVALTYVDGQLVQASTRGNGIVGEDVTANVKTIKAIPKKLTEPL- 174 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 IEVRGE+Y+ K F ALN + A G +P+ANPRNAA+G LR+LN +R L FV+ Sbjct: 175 -TIEVRGEIYMPKASFAALNKQREADGLEPFANPRNAAAGSLRQLNVKITKSRNLAAFVY 233 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 + + Q L++ LG P + R N I Y +E S R +L Y IDG Sbjct: 234 YTAEPEMLGVTTQSGALERFAELGLPTDTHNRVINKMADIADYIDEYTSERESLSYGIDG 293 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V KV++ LQ LG + PRW I++KF ++A T + DI+ +GRTG +TP A ++PV Sbjct: 294 VVVKVNQLDLQFDLGNTVKIPRWAIAYKFPPEEALTIVCDIEWTVGRTGAVTPTAVMDPV 353 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G + A+LHN DY++ +DI++GD V + +AG++IP++ +I+ +R Sbjct: 354 LLAGTTVQRASLHNPDYLR-----------EKDIQIGDTVTLHKAGDIIPEIGQVILEKR 402 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 D++ + P+ CP C+S +V A RC CSAQ E L HF SR+A Sbjct: 403 PTDSETYQVPTICPACESNLVHIEGE------VALRCINPF-CSAQIQEGLTHFASRNAM 455 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 NI+G+G + + K A I+ A I+ + Q + + F + S L D+ Sbjct: 456 NIDGMGPRVVGQLLK----AGYIKDVASIYRITVEQLLT------LDKFQEKSAVKLIDA 505 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 IN + SLER +F LGIR VGA+ AR +A+ + + ++ + + Sbjct: 506 INSSKENSLERLLFGLGIRMVGAKAARLIAEKFRTLSAVSEA----------SVEDIANI 555 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQ 659 +G IAQ+IV+++ P + + L + + +S KK+V TG L+ Sbjct: 556 NGIGHTIAQSIVQYFSTPESKQLLVELASSGVNQSYLSDTVIDENSFFYGKKVVLTGKLE 615 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + R A +++ GA V+ +S KTD++I G+ GSKL+KA QLGV + E+QF+ Sbjct: 616 QSSRPAATKWLQDHGANVAGSVSVKTDLVIAGEAAGSKLDKASQLGVTVWTEQQFVD 672 >gi|251782129|ref|YP_002996431.1| NAD-dependent DNA ligase LigA [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390758|dbj|BAH81217.1| NAD-dependent DNA ligase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 652 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 216/701 (30%), Positives = 352/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L + ++ + YY P + DSEYD L R + + +P+ + P Sbjct: 2 KKRIRELTELLNRYRQEYYTNDSPSVSDSEYDKLYRELVDLENQYPEHVLQ---DSPTQN 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + E K+DG Sbjct: 59 VGGTLLTGFDKYQHQYPLFSLQDAFSREELDAFDKRVK-----SEFPDATYLAELKVDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G+ A RGDG GE+++ ++ I IP L P I VRGE Y+S+ Sbjct: 114 SISLSYENGQLQVGATRGDGSVGENITENLKQIKDIP--QVLPQPLTITVRGEAYMSRQS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N+E G +ANPRNAA+G LR+L+ + + S Q + Sbjct: 172 FKAINEERQENGETEFANPRNAAAGTLRQLDTAVV-AKRQLATFLYQEASPTTRSQQNHV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+ + LGF VN +++ I + +++ R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LKALADLGFSVNQRHHLSSSMDEIWDFIQTVEAERDQLAYDIDGIVIKVNNLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+ ++ ++R + PS CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVSDKRQEQVPMWI-PSQCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 QS +V + A RC L C + L+HF SR+A NI GLG ++ F Sbjct: 399 QSDLVHFEDE------VALRCINPL-CPSLIQRGLEHFASRNAMNIAGLGPAVVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + ADI+ L + ++ G + S L +I ++ S E+ +F L Sbjct: 450 --LAGLVHDVADIYKLTKEDL------LHLDGIKEKSAEKLLAAIETSKSNSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRH+GA+ +R + + ++ + + +G +IA+++V+++Q Sbjct: 502 GIRHIGAKASRLILETCGDIEHLLTVRE----------EDIATIDGLGMVIAKSLVQYFQ 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 I VE L + + ++E+ +V TG L+K+ R+ A+ + LGA Sbjct: 552 QDSAILLVEELKNAGVNLAYLGQKIDSNAELFGLTVVLTGKLEKMTRNDAKAKLETLGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTD++I G + GSKLEKAQ LG++I EE L Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAQALGIRIEGEEWLEQL 652 >gi|320354711|ref|YP_004196050.1| NAD-dependent DNA ligase [Desulfobulbus propionicus DSM 2032] gi|320123213|gb|ADW18759.1| DNA ligase, NAD-dependent [Desulfobulbus propionicus DSM 2032] Length = 670 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 247/714 (34%), Positives = 394/714 (55%), Gaps = 50/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + +A L L ++ +H YY PII D EYDAL R A+ +P+L + Sbjct: 1 MDKGRAADRLEELRGQLRFHAHRYYVLDDPIISDGEYDALFRELLALEQEYPELVTA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +++GG S +V H+ P LSL+ I+++++L F+ + +RF K D + F E Sbjct: 58 DSPSHRVGGPPLHSFAQVEHASPMLSLDNIFDVQELAAFVDKSFRFL--KADGPLCFMTE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEV 187 PK+DG + + Y +G + RGDG GED++A ++ +P+IP N E + V Sbjct: 116 PKLDGLAVELVYRQGMLAVGSTRGDGLVGEDITAQLKTVPSIPLRFINNEGIGGAEELIV 175 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEV++SK F LN + G +ANPRNAA+G LR+L+P R L+FFV+G+ Sbjct: 176 RGEVFLSKQGFQLLNQQRQEAGEPLFANPRNAAAGSLRQLDPRITARRRLDFFVYGVANP 235 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + AK Q E+ + LGFPVN V+ T I Y+ M R L Y+IDG+V K+ Sbjct: 236 DSLAAKSQEEVFHGLARLGFPVNPLVQVCATEEEIRQRYHFMLGARHDLTYEIDGIVVKI 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ LQ++LG AR+PRW ++ KF QA+T + ++ Q+GRTG +TPVA L PV I G Sbjct: 296 NDLGLQQRLGTTARAPRWAVAWKFPATQATTVVERVEFQVGRTGAITPVAHLRPVEIDGV 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ ATLHN+D I +D+ D VLV+RAG+VIP++V +I +R Sbjct: 356 VVKRATLHNQDEI-----------VRKDLYRYDTVLVQRAGDVIPEIVKVIAEKRDGRQV 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP C +V+ + AA RC C AQQ+++L HF + +IEGL Sbjct: 405 PILFPAECPECGQPLVQKPDE------AAIRCVNP-DCPAQQVQKLIHFAGKSGLDIEGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 GK+ ++ + +R D+F L+ K+ ++ G+G+ S N+ ++I +RR Sbjct: 458 GKKNVEQLVRE----GLVRSIPDLFNLR------MDKLASLDGWGEKSARNILEAIEQRR 507 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 ++ L +FI +LGIRHVG A LA+++ + +L+RV +G+ Sbjct: 508 SLPLAQFIAALGIRHVGEVTASVLAEHFRELRELMAA----------KKEALLRVEGIGE 557 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A +++E++Q+P + VE L + R + + + +FTGTLQ + R +A Sbjct: 558 QTADSVIEYFQDPLTVAMVEQLNRAGVVI--RSSTAGGAPLTGRVFLFTGTLQTLSRDEA 615 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ V LGA V+ +S + ++ G+ GSKL+KA+++G+ I+ E+QFL L+ + Sbjct: 616 KQLVKALGAQVATSMSHRVTDVVSGEKAGSKLKKAKEMGLPILTEQQFLPLVAR 669 >gi|319399869|gb|EFV88116.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis FRI909] Length = 665 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 241/708 (34%), Positives = 377/708 (53%), Gaps = 53/708 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ +K + L ++ + YY P + DSEYD L I +P+ + Sbjct: 1 MQDVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFK---STDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N EDLRKF RI + + E K Sbjct: 58 PTVRVGGEAQSSFKKVNHDTPMLSLGNAFNEEDLRKFDQRIRDSIG-----QVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++YE G+FV RGDG +GED++ +R I IP + + EVRGE Y+ Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLN--FEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + F+ LN+E G +P+ANPRNAA+G LR+L+ R L+ F++ + +E A Sbjct: 171 PRRSFIHLNNEKEENGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L+++ LGF N + + G+++Y + S R +L YDIDG+V KV++ S Q Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRESLSYDIDGIVIKVNDLSQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +++G +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V++K+AG++IP+VV I++ R +++ + P+ Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++++ I+ ADIF L+ + G V NL +I K + SLE Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDL------LPLERMGKKKVDNLLLAIEKSKEQSLEH 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + + + LI + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTES----------ELIEIQDIGDKLAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SE-IENKKLVFTGTLQKIQRHKAQE 668 V + +N +E L + + K K +V TG L+++ R++A E Sbjct: 553 VTYLENSDIRSLIEKLSNKNVNMSYKGIKTTEIDGHPDFSGKTIVLTGKLEQMTRNEASE 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 ++ GA V+ +++ TDI+I G + GSKL KA++ G +I E F+ Sbjct: 613 WLKMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFIE 660 >gi|293365500|ref|ZP_06612209.1| NAD-dependent DNA ligase LigA [Streptococcus oralis ATCC 35037] gi|307703456|ref|ZP_07640398.1| DNA ligase, NAD-dependent [Streptococcus oralis ATCC 35037] gi|291315868|gb|EFE56312.1| NAD-dependent DNA ligase LigA [Streptococcus oralis ATCC 35037] gi|307622863|gb|EFO01858.1| DNA ligase, NAD-dependent [Streptococcus oralis ATCC 35037] Length = 652 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 210/700 (30%), Positives = 357/700 (51%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + ++ L ++ + YY P + DSEYD L R + A+PD + + P +++ Sbjct: 3 ERMNELVALLNRYATEYYTSDNPSVSDSEYDCLYRELVELEAAYPDQVLA---DSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 60 GGKVLDGFEKFSHQYPLYSLQDAFSREELEAFDARVRKEIPHP-----TYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YE G V A RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 115 ISLTYENGILVAGATRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q ++L Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKVL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN A + + + E+ R LPYDIDG+V KV++ + Q++LG Sbjct: 232 EHLEQLGFVVNPKRILAQSIDEVWDFIQEVGQEREKLPYDIDGVVIKVNDLAGQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCD 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S+++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 400 SQLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A ++ ADI+ L+ + G + S + LY +I + S E+ +F LG Sbjct: 450 -AANLVKDVADIYRLKENDF------LLLEGVKEKSASKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG++ ++ L +++ S +N AQ D + + +G +IAQ++ ++ Sbjct: 503 IRHVGSKASQLLLQHFHSIENLAQA----------DPEEVASIESLGSVIAQSLQTYFAT 552 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + ++ L + + + + +V TG L+++ R +A+ + LGA V Sbjct: 553 EGSKILLDELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLTRSEAKNKLEILGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KT++++ G + GSKL+KAQ+LG+++ +E L Sbjct: 613 TGSVSKKTNLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652 >gi|168705071|ref|ZP_02737348.1| NAD-dependent DNA ligase [Gemmata obscuriglobus UQM 2246] Length = 678 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 212/708 (29%), Positives = 349/708 (49%), Gaps = 45/708 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L +++ +H+ YY + P+I D E+D L + I A P L P+ P + Sbjct: 10 AERAAELRKQLDHHNYLYYVEAAPVISDREFDTLLKELADIERANPGLV---TPDSPTQR 66 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG+ +VTH P LS++ ++ DLRKF + + ++ + E KIDG Sbjct: 67 VGGQPIPGFKQVTHKTPMLSIDNSYDEGDLRKFDADVRKAVG--PGAAVDYVTELKIDGV 124 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKN 196 +++ YE G +AA RG G G+DV+ I+ I IP + N P I EVRGEVY+++ Sbjct: 125 SMSLTYENGVLAFAATRGSGTVGDDVTHNIKTIAAIPLKLKTSNPPAIFEVRGEVYMTRG 184 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQY 255 + +N E ++PY N RN +G L+ +P + TR L FF +G G + Q Sbjct: 185 ELARINAEQAKGNQEPYKNARNLTAGTLKLKDPRECATRKLAFFAYGSGDIGGLAITTQA 244 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 ML K++ GFPVN R + +++Y E + R L YD DG+V KV++++ ++++ Sbjct: 245 AMLAKLKEFGFPVNPHERVCGSIDEVIAYCQEWEPKRKELAYDTDGIVVKVNDWAQRERI 304 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP-VNIGGALITNATLH 374 G A+ P+W ++KF +QA+T+L + +G+ G LTPVA +P V + G +T+A++H Sbjct: 305 GYTAKVPKWAKAYKFEAEQATTKLGKVVFYLGKFGELTPVATFDPPVQLAGTTVTHASMH 364 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N ++ RD+R+GD V+V++ GE+IP+VVD+I +R Q ++P C Sbjct: 365 NASWV-----------AERDVRIGDTVVVEKKGEIIPQVVDVIKADRTGAEQVITWPDKC 413 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C V ++ + + C C AQ +RL+ F + I+GLG++ Sbjct: 414 PKCGGPVEKEESATSYN----FICANTGVCPAQLAKRLEGFAKKTRMEIDGLGREVAVQL 469 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 +E ++ AD++ L + Q + GF D NL D I + L R + Sbjct: 470 VDTE----LVKSVADLYRLTKAQL------LALEGFKDKKAQNLLDGIAASKGRGLARLL 519 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 L I VG ++ L + + L RV G AQ + Sbjct: 520 PGLTIYMVGEAMSDLLVEEFPDIDLIIAA----------APEDLARVKGFGPKRAQFVRA 569 Query: 615 FYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F+ + + L + + + K +V TGTL R ++ + Sbjct: 570 FFDSESGRQLIADLKQFGIKMTHDKKAAPTGGLPLAGKTVVVTGTLVNYDRIGIEQAIKD 629 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 GA S +S+KTD ++VGD PGSK +KA++LGVKI+NE +F ++ + Sbjct: 630 AGAKASGSVSKKTDFVLVGDKPGSKADKAKELGVKIINEAEFRQMIGE 677 >gi|312144161|ref|YP_003995607.1| DNA ligase, NAD-dependent [Halanaerobium sp. 'sapolanicus'] gi|311904812|gb|ADQ15253.1| DNA ligase, NAD-dependent [Halanaerobium sp. 'sapolanicus'] Length = 670 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 242/712 (33%), Positives = 400/712 (56%), Gaps = 48/712 (6%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + L+ E+A+K++ +L ++I + Y+ P I D+E+D L + + FP+L + Sbjct: 1 MNNLNKEKAKKKIKALREKIRKAEYRYFVLDDPQISDAEFDKLMQDLLKLESQFPELVTA 60 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P ++GGE+ KV HS LSL+ +N E+LR F R+ + ++D + Sbjct: 61 ---DSPTQRVGGEVLDEFEKVEHSTEMLSLDNSFNAEELRGFDQRVKKNTTERDYQ---Y 114 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG IRY+ G F A RG+G GE+++ ++ I ++P L + +E+R Sbjct: 115 IVEHKIDGLSAVIRYQGGSFQLGATRGNGEVGENITENMKTIRSLP--LKIEDKAELELR 172 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS 247 GE+Y+SK++F +N++ + +KP+ANPRNAA+G +R+L+ +R L+ ++ L S Sbjct: 173 GEIYLSKSEFERINEKRLENEKKPFANPRNAAAGSVRQLDSKIAASRRLSILIYDLISHS 232 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + E+ + GF VN ++A+ ++ E + R +L ++IDGLV K++ Sbjct: 233 NREFETHLEVFAYLEEQGFNVNWH-KKADDIGKVIEICQEWEEKRESLDFEIDGLVVKIN 291 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +L+++LG ARSPRW I++KF +Q +TR+ I+I +GRTG LTP A LEPV I G+ Sbjct: 292 NLNLREELGSTARSPRWAIAYKFPAQQKTTRVKSIEISLGRTGALTPTAVLEPVEIAGST 351 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHNED IK +DIR+GD VLV++AG+VIP+VV +I +R + Sbjct: 352 VSRATLHNEDEIKR-----------KDIRIGDIVLVQKAGDVIPEVVKVIKEKRDGCEKE 400 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P CP+C ++V R A RCT ++C AQ+ E++ HFVSRDA NIEG+G Sbjct: 401 FEMPDHCPVCGTKVKRPEGE------AVTRCTN-ISCPAQRKEKILHFVSRDAMNIEGVG 453 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 +D +++ I D++ L++ ++N+ G+ S N+ D+I + ++ Sbjct: 454 PALVDQLLEND----LIDDYGDLYFLKKH------HLQNLERMGEKSSQNVIDAIKQSKD 503 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R I++LGIRHVG AR+L+ Y S + N L + +G + Sbjct: 504 REFFRVIYALGIRHVGLGAARTLSDNYSSISQLMEASN----------EELEEIDEIGPV 553 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 IA +I++F+ +N + L + + + +E K VFTG+L R + + Sbjct: 554 IADSIIDFFAEKQNRDLISRLRQAGINLSRENTEEKEKFLEGLKFVFTGSLNDFTRSEVK 613 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + V + G + +S KTD +++GDNPGSK +KAQ+LG+KI++E +F LL+ Sbjct: 614 DLVEKAGGRSVSSVSSKTDYLVIGDNPGSKYQKAQELGIKILSESEFKELLE 665 >gi|315095035|gb|EFT67011.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL060PA1] Length = 740 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 209/743 (28%), Positives = 339/743 (45%), Gaps = 74/743 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R + L Q I D YY P I D+EYD L + P+L P+ P + Sbjct: 21 RHHWTELAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPTQR 77 Query: 78 IGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +G V H LSL+ ++ ++L ++I+R+ K + F E KIDG Sbjct: 78 VGAPQRVTDFAPVKHLERLLSLDNVFTRDELSEWISRVATAVGKIPN----FLCELKIDG 133 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVYISK 195 + + Y G+ V A RGDG GEDV+A +R I IP+ L+ + +EVRGEV+ Sbjct: 134 LAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPQKLTGDDVPRLLEVRGEVFFPV 193 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF LN ++ G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Q Sbjct: 194 ADFTDLNAALVEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFPSQ 253 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 K+ G PV+ + + + R + IDG+V KVD+ SLQ++ Sbjct: 254 GHAYDKLAQWGLPVSPYFKIVEHADEVQEFVTRWGESRDEASHQIDGVVVKVDDVSLQRK 313 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + ATLH Sbjct: 314 LGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVAVAGSTVEMATLH 373 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N +K + + +GD V++++AG+VIP+++ +V R+ + F P C Sbjct: 374 NAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMPDHC 422 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 423 PSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAAIAL 477 Query: 495 FKSED----------------------PAFSIRIPADIFT----LQRRQQTSTTKIENIL 528 E+ A + D +RR+ + Sbjct: 478 TDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQPDDLAEVKVWRRRKVNGGPGPWQLE 537 Query: 529 GFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576 + ++D + K ++ L R + +L IRHVG AR+LA ++ S Sbjct: 538 PYFFTKATAKKPSAPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATHFGS 597 Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636 + + L V VG+IIA+++ +++ + + Sbjct: 598 VEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAAGVRMA 647 Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG+N GS Sbjct: 648 DDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGENAGS 707 Query: 697 KLEKAQQLGVKIMNEEQFLFLLQ 719 K KA+ LG I++E F +LL+ Sbjct: 708 KEIKARDLGRPILDEAGFRYLLE 730 >gi|330752433|emb|CBL87383.1| DNA ligase [uncultured Flavobacteria bacterium] Length = 663 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 216/704 (30%), Positives = 359/704 (50%), Gaps = 47/704 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+ + L E+ H+ YY P I D E+D ++ + +P+L DPN P + Sbjct: 4 RELIFQLRNELRKHNHNYYVLDTPTISDFEFDIKLKKLQVLESQYPEL---SDPNSPTMR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + + V H+ SL+ ++ DL + +R+ R D + +T E K DG Sbjct: 61 VGGAVTKNFQTVFHAQRMYSLDNSYSKSDLLDWESRVKRAV----DGPVSYTCELKYDGA 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I+I Y+ G A RGDG+ G+DV+A ++ I ++P VL + PE E+RGE+ + Sbjct: 117 SISITYKNGCLFRALTRGDGNKGDDVTANVKTIKSLPLVLQGDFPESFEIRGEIILPFKG 176 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N + I+ G +P+ NPRN ASG L+ + +++ R + + K QYE Sbjct: 177 FKAMNKQRISQGEEPFKNPRNTASGSLKLQDSSEVARRPLECLLYSIEGENTGIKYQYEN 236 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+K R GF V + ++ ++ + R LPY+IDG+V KV++ Q +LG Sbjct: 237 LEKARMWGFKVPEEAQCVDSIEAVLKFIEHWDKARYDLPYEIDGIVVKVNDLQQQAELGF 296 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A++PRW +++KF +Q STRL I Q+GRTG +TPVA LE V + G ++ A+LHN D Sbjct: 297 TAKAPRWAMAYKFKAEQVSTRLNYISYQVGRTGAITPVANLEAVELAGTVVKRASLHNAD 356 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I L D+RVGD V V++ GE+IPK++ + +++R A + S CP C Sbjct: 357 QILKL-----------DVRVGDAVFVEKGGEIIPKIIGVDLSKRILGASKTKYISECPDC 405 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 ++ ++R A H C + C Q + R++H++SR A +IEGLG + + Sbjct: 406 KTPLIRKDGE------AQHYCPNTIGCPPQIIGRIQHYISRKALDIEGLGGETVAMLV-- 457 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A I+ PAD++TL+ + + + S NL + + I ER +F L Sbjct: 458 --AAGLIKDPADLYTLEIKD------LLPLERMAQKSAENLIKGVQSSKQIPFERVLFGL 509 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR+VG +A+ LAK+Y + ++ L V +G IA+++ F++ Sbjct: 510 GIRYVGETVAKILAKHYKTVHALSEA----------SVEDLEAVDEIGIKIAKSVYAFFR 559 Query: 618 NPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 N +I + L N ++ + ++V +G ++ R++ + + G Sbjct: 560 NDVSIRLLSRLYSYGLQLSLSDEVLANQTTLLTGHRIVVSGVFDQVSRNELKRLIEANGG 619 Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 V + +S KT +I G N G SK +KA+ LG+ ++ E+ FL + Sbjct: 620 KVVSSISSKTSYLIAGSNVGPSKRQKAENLGITVLTEQAFLDKI 663 >gi|327489925|gb|EGF21714.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1058] Length = 652 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 217/701 (30%), Positives = 355/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ +S L + ++ + YY +P + DSEYD L R + +P P+ P ++ Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ K H P SL+ ++ E+L F R+ + + + E KIDG Sbjct: 59 VGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRVRK-----EFPQASYLCELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YEKG V A RGDG GE+++ ++ + IP L + I VRGE Y+ K Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N G +ANPRNAA+G LR+L+ + N + S A Q + Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQADSQEAV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L K+ L F VN A++ + + ++ R +LPY+IDG+V KV++ ++Q++LG Sbjct: 231 LNKLADLDFSVNPTHILADSIEAVWKFIEKIAQERDSLPYEIDGIVIKVNDLAVQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR D V+V +AG++IP V+ ++ ++R + PS CP C Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEPL-EIPSHCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNINGLGPAVVEKLFAQ 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 ++ A I+ L + + F + S LY +I + S E +F L Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYTAIQASKENSAECLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ +R L + + +Q + + +G +IAQ++ +++ Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + L + + + + +V TG LQK+ R++A+E + LGA Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 VS +S+KTD+++ G++ GSKL KAQ+LG++I +E+ L Sbjct: 612 VSGSVSKKTDLVVAGEDAGSKLAKAQELGIEIRDEDWLDSL 652 >gi|307709253|ref|ZP_07645711.1| DNA ligase, NAD-dependent [Streptococcus mitis SK564] gi|307619836|gb|EFN98954.1| DNA ligase, NAD-dependent [Streptococcus mitis SK564] Length = 648 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 213/698 (30%), Positives = 355/698 (50%), Gaps = 51/698 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 ++ L ++ + YY P + DSEYD L R + A+PD + + P +++GG Sbjct: 1 MNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELESAYPDQVLA---DSPTHRVGG 57 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 ++ K +H P SL+ ++ E+L F R+ + + E KIDG I+ Sbjct: 58 KVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKEVAHP-----TYICELKIDGLSIS 112 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + YEKG V A RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 113 LTYEKGILVAGATRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASFDQ 170 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260 +N G +ANPRNAA+G LR+L+ + N + S Q ++L+ Sbjct: 171 VNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKVLKH 229 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 + LGF VN A I + E+ R +LPYDIDG+V KV++ + Q++LG + Sbjct: 230 LEQLGFVVNPKRILAENIDEIWHFIQEVGEERDSLPYDIDGVVIKVNDLAGQEELGFTVK 289 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 +P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 290 APKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI- 348 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S Sbjct: 349 ----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCDSG 397 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 ++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 398 LLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----A 446 Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560 A ++ ADI+ LQ + G + S LY +I + S E+ +F LGIR Sbjct: 447 ANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIR 500 Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 HVG + ++ L +++ S +N AQ D + + +G +IA+++ ++ Sbjct: 501 HVGNKASQLLLQHFHSIENLAQA----------DPEEVASIESLGGVIAKSLQTYFATEG 550 Query: 621 NICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 + + L + + ++ + +V TG L++++R +A+ + LGA V+ Sbjct: 551 SEILLRELKEAGVNLDYKGQTVVANAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTG 610 Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +S+KTD+++ G + GSKL+KAQ+LG+++ +E L Sbjct: 611 SVSKKTDLVVAGADAGSKLQKAQELGIEVRDEAWLESL 648 >gi|73662196|ref|YP_300977.1| NAD-dependent DNA ligase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|84028903|sp|Q49YU8|DNLJ_STAS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|72494711|dbj|BAE18032.1| NAD-dependent DNA ligase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 667 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 234/712 (32%), Positives = 380/712 (53%), Gaps = 53/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + + L + ++ + YY P + DSEYD L I P+ + Sbjct: 1 MADIQSRVDELHRLLNQYSYEYYVKDNPSVPDSEYDKLLHELIDIETQHPEY---RTADS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + KV H P LSL +N EDLRKF RI + ++ + E K Sbjct: 58 PTVRVGGSAQSTFEKVNHDTPMLSLGNAFNEEDLRKFDQRIR-----DNIGNVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++YE G+FV RGDG +GED++ ++ I IP ++ + EVRGE Y+ Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLKTIHAIPLKINESR--TFEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + F+ LN+ A +P+ANPRNAA+G LR+L+ R L+ F++ + ++ A Sbjct: 171 PRKSFVNLNEAKAANEEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDFTQFNAD 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L ++ LGF N ++ T +++Y ++ R LPYDIDG+V KV+ Q Sbjct: 231 TQSEALDELDQLGFKTNQERQRVQTIEEVMTYIDKWTKQRENLPYDIDGIVIKVNALEQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG +SPRW I++KF ++ T LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 ETLGFTQKSPRWAIAYKFPAEEVVTELLDIELSIGRTGVVTPTAVLEPVRVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I +DIR+GD V++K+AG++IP+V+ +++ R DA+ + PS Sbjct: 351 LHNEDLIH-----------DKDIRIGDSVVIKKAGDIIPEVIKSVLDRRPDDAEIYHMPS 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C+ +VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCEHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 +++E I+ ADIF L + + G+ V NL ++I K ++ SLE+ Sbjct: 453 QLYENEK----IKDVADIFYLTKEDL------LPLDRMGEKKVDNLLNAIEKAKSNSLEQ 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ +A+ Y + +L+ + VG +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVIAEKYGTIDELFHVTE----------EALMDIHDVGHKLAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQRHKAQE 668 V + +N ++ L + I + K E ++K +V TG L ++ R++A Sbjct: 553 VTYLENEDIRALIDKLKAKNVNMIYKGVKTTELEGHPDFKDKTIVLTGKLYQMTRNEASN 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ GA V+ +++ TD++I G++ GSKL KA++ G +I +EE F+ + Sbjct: 613 WLALQGAKVTNSVTKNTDLVIAGEDAGSKLAKAEKFGTEIWSEEAFVQKQNE 664 >gi|315660157|ref|ZP_07913014.1| NAD-dependent DNA ligase LigA [Staphylococcus lugdunensis M23590] gi|315494838|gb|EFU83176.1| NAD-dependent DNA ligase LigA [Staphylococcus lugdunensis M23590] Length = 667 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 241/708 (34%), Positives = 377/708 (53%), Gaps = 53/708 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + ++ L ++ + YY P + DSEYD L I P+ + + Sbjct: 1 MDNLQHRVNELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIQIEADHPEYKTT---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N EDL++F RI + + E K Sbjct: 58 PTVRVGGEAQSSFEKVRHDTPMLSLGNAFNEEDLKRFDQRIRDHIG-----EVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++YE GKFV RGDG +GED++ +R I IP L + EVRGE Y+ Sbjct: 113 IDGLAVSLKYENGKFVQGLTRGDGTTGEDITENLRTIHAIPLKLKEPLN--FEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + F++LN + +P+ANPRNAA+G LR+L+ R L+ F++ + S+ A Sbjct: 171 PRASFMSLNKQKEKNNEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDFSDFNAT 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q + L ++ LGF NN + G+++Y + + R +L YDIDG+V KV++ + Q Sbjct: 231 TQSDALDELDRLGFKTNNERECVSDIDGVLAYIEKWTAKRESLAYDIDGIVIKVNDLAQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +++G +SPRW I++KF ++ TRLLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVVTRLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V+VK+AG++IP+VV I+ R DA+ + P+ Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVVKKAGDIIPEVVKSIIERRPNDAETYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C ++VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHKLVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++ E I+ ADIF L + G V NL +I+K ++ SLE Sbjct: 453 QLYQHE----LIKDVADIFYLTEEDL------LPLERMGKKKVENLLQAIDKAKSNSLEH 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+GA+ + LA+ Y + + LI + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGAKASYVLAEKYETIERLLTVTE----------DELISIHDIGDKLAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQRHKAQE 668 V + +N + L + + K E ++K +V TG L+++ R +A + Sbjct: 553 VTYLENEDIQSLISKLANKDVNMTFKGVKISELAGHPEFQDKTIVLTGKLEQMTRKEAAD 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 ++ GA V+ +++ TD++I G++ GSKL KAQ+ G +I +E F+ Sbjct: 613 WLQLQGAKVTNSVTKNTDLVIAGEDAGSKLTKAQKFGTEIWSESDFIS 660 >gi|239906999|ref|YP_002953740.1| NAD-dependent DNA ligase [Desulfovibrio magneticus RS-1] gi|239796865|dbj|BAH75854.1| NAD-dependent DNA ligase [Desulfovibrio magneticus RS-1] Length = 704 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 238/732 (32%), Positives = 356/732 (48%), Gaps = 63/732 (8%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 +I + + L L I +D YY P + D+ YDAL R A+ A P+L Sbjct: 1 MIAVSTIDPA---ARLRELRDLIHEYDYRYYVLDDPTVEDAAYDALYRELKALEEAHPEL 57 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD--D 123 A DPN P ++GG + H SL+ ++ R F+TR ++ Sbjct: 58 A---DPNSPTRRVGGAVLEGFASKPHRRRMYSLDNAMAEDEWRDFVTRAANKLERDGVAF 114 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN--- 180 ++ F ++PK DG + I YE G + A RGDG GEDV+ +R + +P L + Sbjct: 115 DAPAFWVDPKFDGLALEIIYENGVYAGALTRGDGEVGEDVTENVRTVRNVPLDLRPHAAR 174 Query: 181 ----IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRY 235 +P ++EVRGEV +++ DF LN+ G K +ANPRNAA+G +R+L+ TR Sbjct: 175 AGLPVPRLLEVRGEVVMTRQDFYELNERQREQGGKVFANPRNAAAGSVRQLDSRISATRP 234 Query: 236 LNFFVHGLGKTSE------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK 289 L FF + +G ++ ++ LG PV + + Y+ M Sbjct: 235 LTFFTYAVGSQDWGDGLAGPGWATHSAVMAGLKALGLPVAGQGKVVTA-DEVYPYFEAMG 293 Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349 R LP++IDG+V KVD +LQ+ LG R+PR+ ++ KF +A T L ID+Q+GRT Sbjct: 294 RQRQELPFEIDGVVVKVDSLALQEALGFTDRAPRFAVALKFPAHEAETVLKHIDVQVGRT 353 Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409 G+LTPVA LEPV++ G + ATLHNED IK +D+R GD V+V+RAG+V Sbjct: 354 GVLTPVAILEPVSLAGVTVARATLHNEDEIK-----------AKDLRPGDTVVVRRAGDV 402 Query: 410 IPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 IP+VV ++ ++R +A+P+ FP CP C S VR AA RC LAC A Sbjct: 403 IPEVVRVVEDKRPAEAEPYDFPHVCPSCGSDAVRGEGE------AAWRCVN-LACPAMLR 455 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529 + +FVS+ +IEGLG + + ++ PAD+F L ++ Sbjct: 456 RGISYFVSKSGLDIEGLGAKWVAALIDK----GMVKSPADLFDLTEADLLPLERMAEKSA 511 Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 V+ + SL + I +LGIR VG AR+LA ++ Sbjct: 512 ANFVAAVAAAKQ-----SASLVKLIAALGIRQVGTRTARTLAGHFHDLDALGAA------ 560 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SE 646 L +P +G +A +I EF+ N N +E +G + + Sbjct: 561 ----SLEELTALPDIGPEVAGSIREFFANEANRELLERFKGIGLWPVGEAKPETPAVQTA 616 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + K+ +FTG L + R AQ+ V G VV +S+K D ++ G +PGSKL KAQ LG+ Sbjct: 617 LTGKRFLFTGALPDLTREAAQKLVEAAGGVVVGSVSKKLDYLVAGADPGSKLAKAQALGI 676 Query: 707 KIMNEEQFLFLL 718 I++ E F LL Sbjct: 677 TILSPEAFAALL 688 >gi|325687188|gb|EGD29210.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK72] Length = 652 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 219/701 (31%), Positives = 357/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ +S L + ++ + YY +P + DSEYD L R + +P P+ P ++ Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ K H P SL+ ++ E+L F R+ + + + + E KIDG Sbjct: 59 VGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRVRK-----EFPQVSYLCELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YEKG V A RGDG GE+++ ++ + IP L + I VRGE Y+ K Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N G +ANPRNAA+G LR+L+ + N + S A Q E+ Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQADSQEEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L K+ LGF VN A++ + + ++ R +L Y+IDG+V KV++ ++Q++LG Sbjct: 231 LNKLADLGFSVNPTHILADSIEAVWKFIEKIAQERDSLAYEIDGIVIKVNDLAVQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR D V+V +AG++IP V+ ++ ++R + PS CP C Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEAL-EVPSHCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNIAGLGPAVVEKLFAQ 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 ++ A I+ L + + F + S LY +I + S ER +F L Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYTAIQASKENSAERLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ +R L + + +Q + + +G +IAQ++ +++ Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + L + + + + +V TG LQK+ R++A+E + LGA Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 VS +S+KTD+++ G + GSKL KAQ+LG++I +E+ L Sbjct: 612 VSGSVSKKTDLVVAGADAGSKLAKAQELGIEIRDEDWLDSL 652 >gi|325295048|ref|YP_004281562.1| DNA ligase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065496|gb|ADY73503.1| DNA ligase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 723 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 217/730 (29%), Positives = 365/730 (50%), Gaps = 57/730 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 + LS E+A++ L + I YHD YY + P+I D +YD L + + ++ Sbjct: 28 YLGKLSTEEAKELAEKLRKVIRYHDYKYYVLASPVISDYQYDKLFHALEDLEKVHSEII- 86 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P +I KV H SLE ++ EDL+++ ++ + ++ + Sbjct: 87 --TPDSPTQRIAPAFTGEFEKVKHLAEMTSLENTYSPEDLKEWDRKVKQLLGRE---EVE 141 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII-- 185 + +EPK DG + + YE A RGDG GED++ +R I +IP + I Sbjct: 142 YIVEPKFDGASVELVYEDDLLKRAVTRGDGVIGEDITMNVRTIKSIPLKAPFSRYGINLI 201 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-----YLNFFV 240 +RGE+ + K+ F LN E G +ANPRNAA+G LR NP+++ + Y + Sbjct: 202 SIRGEIVMPKSVFEKLNKEREKQGLPLFANPRNAAAGTLRLKNPSEVAKRGLDCYAYQIL 261 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 + GK K Q E L+ + GF + ++ + + R + ++ D Sbjct: 262 YSEGKRLCDDIKTQSEALKLLAHCGFKSPRIQKVCKNIDEVIETVLQAQEERESWDFEAD 321 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V KV++ LGE P+W +++KF KQA T+L+D+ Q+GRTG LTPVA LEP Sbjct: 322 GMVVKVNDICAWNVLGETMHHPKWAVAYKFPAKQAVTKLVDVVWQVGRTGALTPVAVLEP 381 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V +GG +++ A+L N D+IK +DIR+ D V+V+RAGE IP +V I + Sbjct: 382 VEVGGVVVSRASLFNPDFIK-----------QKDIRIFDYVIVERAGETIPYIVAPIKDR 430 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R + P+ CP+C++ +V++L+ A RC + C AQ E L ++ Sbjct: 431 RSGKEKLVEVPTHCPVCKAPIVKELDE------AVPRC-PNINCPAQLKEHLVYWG--KV 481 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +I+GLG+ + K+E ++ AD++ L + + G+G NL Sbjct: 482 LDIKGLGESTANILLKNE----LVKSIADLYYLNKFDLIK------LPGWGLKKAENLLK 531 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 I K ++ + + + +LGIRHVG + A+ LA+ + + L Sbjct: 532 QIEKSKSATFWKKLTALGIRHVGEKTAQFLAQKFKDINELMNA----------SFSELAS 581 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS----PSIGRHEKNVSSEIENKKLVFTG 656 + +G I A +I F++ +NI ++ L + E+ + +E + +VFTG Sbjct: 582 IQGIGAITATSIRNFFKAKQNIEMIKRLEETGFYFRRTEEEEKEQKLPKPLEGQNIVFTG 641 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 L+ R +AQ V+ LG + +++KT ++VG+NPGSK KAQ+LG+K++NEE+FL Sbjct: 642 ELEHFTRKEAQYLVSLLGGNPTNSVTKKTSFVVVGENPGSKFAKAQKLGIKLLNEEEFLK 701 Query: 717 LLQQYNTTLR 726 L+++++ Sbjct: 702 LIKKFSKDNP 711 >gi|149024919|ref|ZP_01836320.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP23-BS72] gi|303259779|ref|ZP_07345754.1| DNA ligase [Streptococcus pneumoniae SP-BS293] gi|303262954|ref|ZP_07348889.1| DNA ligase [Streptococcus pneumoniae SP14-BS292] gi|303264916|ref|ZP_07350832.1| DNA ligase [Streptococcus pneumoniae BS397] gi|303266897|ref|ZP_07352775.1| DNA ligase [Streptococcus pneumoniae BS457] gi|303268933|ref|ZP_07354718.1| DNA ligase [Streptococcus pneumoniae BS458] gi|147929542|gb|EDK80536.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP23-BS72] gi|301794230|emb|CBW36650.1| DNA ligase [Streptococcus pneumoniae INV104] gi|302635931|gb|EFL66431.1| DNA ligase [Streptococcus pneumoniae SP14-BS292] gi|302638984|gb|EFL69444.1| DNA ligase [Streptococcus pneumoniae SP-BS293] gi|302641551|gb|EFL71913.1| DNA ligase [Streptococcus pneumoniae BS458] gi|302643595|gb|EFL73864.1| DNA ligase [Streptococcus pneumoniae BS457] gi|302645604|gb|EFL75835.1| DNA ligase [Streptococcus pneumoniae BS397] gi|332202976|gb|EGJ17044.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA47901] Length = 652 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 213/700 (30%), Positives = 355/700 (50%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K ++ L ++ + YY P + DSEYD L R + A+P+ + + P +++ Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 60 GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YEKG V RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q + L Sbjct: 173 DQVNQVRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN A I ++ E+ R LPYDIDG+V KV++ + Q++LG Sbjct: 232 KYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCN 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S ++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A ++ ADI+ LQ + G + S LY +I + S E+ +F LG Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG++ ++ L +Y+ S +N +Q D + + +G +IA+++ ++ Sbjct: 503 IRHVGSKASQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFAT 552 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + + L + + + + +V TG L++++R +A+ + LGA V Sbjct: 553 EGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KTD+++VG + GSKL+KAQ+LG+++ +E L Sbjct: 613 TGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652 >gi|149003762|ref|ZP_01828594.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP14-BS69] gi|237650785|ref|ZP_04525037.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae CCRI 1974] gi|237822373|ref|ZP_04598218.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae CCRI 1974M2] gi|147758208|gb|EDK65210.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP14-BS69] Length = 652 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 213/700 (30%), Positives = 355/700 (50%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K ++ L ++ + YY P + DSEYD L R + A+P+ + + P +++ Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 60 GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YEKG V RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q + L Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN A I ++ E+ R LPYDIDG+V KV++ + Q++LG Sbjct: 232 KYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCN 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S ++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A ++ ADI+ LQ + G + S LY +I + S E+ +F LG Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG++ ++ L +Y+ S +N +Q D + + +G +IA+++ ++ Sbjct: 503 IRHVGSKASQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFAT 552 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + + L + + + + +V TG L++++R +A+ + LGA V Sbjct: 553 EGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KTD+++VG + GSKL+KAQ+LG+++ +E L Sbjct: 613 TGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652 >gi|57867376|ref|YP_189011.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis RP62A] gi|81674000|sp|Q5HN30|DNLJ_STAEQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|57638034|gb|AAW54822.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis RP62A] Length = 665 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 242/708 (34%), Positives = 378/708 (53%), Gaps = 53/708 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ +K + L ++ + YY P + DSEYD L I +P+ + Sbjct: 1 MQGVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFK---STDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N EDLRKF RI K + + E K Sbjct: 58 PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRDSIGK-----VEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++YE G+FV RGDG +GED++ +R I IP + + EVRGE Y+ Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLN--FEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + F+ LN+E G +P+ANPRNAA+G LR+L+ R L+ F++ + +E A Sbjct: 171 PRRSFIHLNNEKEQNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L+++ LGF N + + G+++Y + S R +L YDIDG+V KV++ S Q Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRGSLSYDIDGIVIKVNDLSQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +++G +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V++K+AG++IP+VV I++ R +++ + P+ Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++++ I+ ADIF L+ + G V NL +I K + SLE Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDL------LPLERMGKKKVDNLLLAIEKSKEQSLEH 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + + + LI + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTES----------ELIEIQDIGDKLAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SE-IENKKLVFTGTLQKIQRHKAQE 668 V + +N +E L + + K K +V TG L+++ R++A E Sbjct: 553 VTYLENSDIRSLIEKLSNKNVNMSYKGIKTTEIEGHPDFSGKTIVLTGKLEQMTRNEASE 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 ++ GA V+ +++ TDI+I G + GSKL KA++ G +I E F+ Sbjct: 613 WLKMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFIE 660 >gi|297559142|ref|YP_003678116.1| DNA ligase, NAD-dependent [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843590|gb|ADH65610.1| DNA ligase, NAD-dependent [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 775 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 222/743 (29%), Positives = 355/743 (47%), Gaps = 72/743 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ R + L QE+ H YY P+I D+EYD L R I ++P LA + Sbjct: 11 PDEVRARHTELCQELDDHSYRYY-LGTPVISDAEYDTLMRELVGIEDSYPALATQ---DS 66 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+G +++ V H + SL +++++L + R + + E K Sbjct: 67 PTQKVGAPISVDFAAVEHLVRMESLGNAFDVDELNAWADR-----ASAEVPVNGYLCELK 121 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGE 190 IDG + + YEKG+ V AA RGDG GED++ +R I +P L PE++EVRGE Sbjct: 122 IDGLAVDLVYEKGRLVRAATRGDGRVGEDITLNVRTIGVVPERLDESVRPAPELLEVRGE 181 Query: 191 VYISKNDFLALNDEMIAVGRK-PYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 V++ DF LN+ + A G P+ANPRNAA+G LR+ +P TR L+ VHG+G S Sbjct: 182 VFLPVEDFGKLNERITASGEHTPFANPRNAAAGSLRQKDPRVTATRPLSMIVHGVGAYSP 241 Query: 249 IF-------AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 Q + + + G P+++ R T + Y + R Y+IDG Sbjct: 242 AKDGGGEVAFTSQSQAYRLLGEWGLPLSDRYRVVTTMDEVREYVAHYAAHRHEPAYEIDG 301 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V KVD+F+LQ++LG +R PRW I++K+ ++ +TRLLDI + +GRTG +TP +EPV Sbjct: 302 IVIKVDDFALQRRLGSTSRVPRWAIAYKYPPEEVTTRLLDIKVGVGRTGRVTPYGVMEPV 361 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G+ + ATLHN ++ + + +GD V++++AG+VIP++V +++ R Sbjct: 362 VVAGSEVEFATLHNAREVER-----------KGVLIGDTVVLRKAGDVIPEIVAPVLDRR 410 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 + F+ P CP C + + + + RC +C Q ERL SR A Sbjct: 411 DGTERAFAMPESCPECGTTLGQQ-----KEGDVDLRCPNARSCPGQLRERLFFVASRKAL 465 Query: 482 NIEGLGKQQLDFFFKSEDPA-FSIRIPADIFTLQRRQQTSTTKI---------------- 524 +IE LG + +PA +R D+F L Sbjct: 466 DIEALGYVAATALTQPLEPARPPVRDEGDLFDLTVDMLLPIRTHVLDPDTTEPKTDPKTG 525 Query: 525 --------ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576 N G +V L++ + + ++ L R + +L IRHVG A LA+++ S Sbjct: 526 EPKVVSFFANKKGEPKKTVEKLFEQLEEAKSKPLWRVLVALSIRHVGPRAAEDLARHFRS 585 Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636 L V VG IA +I E++ + V Sbjct: 586 MDAIRAASE----------EELAAVDGVGPTIAASIREWFSVDWHAEIVRKWADAGVRME 635 Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696 + + +E +V TG+L+ R A+E + + G +A +S+KT ++VGD+PGS Sbjct: 636 DEDDGSRPRHLEGVTVVVTGSLEGFSRDGAKEAIAERGGRATASVSKKTGFVVVGDSPGS 695 Query: 697 KLEKAQQLGVKIMNEEQFLFLLQ 719 K +KA +LGV +++EE F LL+ Sbjct: 696 KYDKAVKLGVPVLDEEGFRVLLE 718 >gi|169335238|ref|ZP_02862431.1| hypothetical protein ANASTE_01646 [Anaerofustis stercorihominis DSM 17244] gi|169257976|gb|EDS71942.1| hypothetical protein ANASTE_01646 [Anaerofustis stercorihominis DSM 17244] Length = 659 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 229/706 (32%), Positives = 376/706 (53%), Gaps = 48/706 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E +KE+ L +E+ H+ YY+ P I D +YD L R+ + +P + Sbjct: 1 MEDIKKEIEKLTEELLEHNRKYYEEDNPSISDYDYDMLIRKLTKLEEEYPQYKKEY---S 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +++GG+ + KV H LSL ++ ++L +F R+ + + + +TLE K Sbjct: 58 PTDRVGGKALDAFDKVKHEYKQLSLSNAFSYDELLEFDQRVKK-----EIENPVYTLENK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 DG I + Y+KG A RGDG GEDV+ ++ I +IP L+ + + VRGEV I Sbjct: 113 FDGLTIVLTYKKGLLSVGATRGDGEVGEDVTLNVKTIKSIPLKLNEEV--DLTVRGEVLI 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAK 252 K++F +N E G +ANPRN A+G +R+L+ R L+ F+ L Sbjct: 171 YKDNFEKINKEREKEGLSLFANPRNMAAGSIRQLDSKIAAKRNLDCFIFNLEHIEGKTLS 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 E L ++ LGF V+ + + I + + R ++PY+IDG V K+++ + Sbjct: 231 SHSESLDYLKSLGFKVSE-YKIFDNMKDIFDELIKKEDSRKSMPYEIDGAVIKLNDLEER 289 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG ++PRW I++KF+E + T+L DI + +GRTG LTPVA LE V I G+ ++ AT Sbjct: 290 ELLGSTNKNPRWAIAYKFSETKVKTKLTDIIVNVGRTGTLTPVAILEGVRIDGSFVSRAT 349 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNEDYI DIR+GD V+VK+AGE+IP+V+ + +R D + F P Sbjct: 350 LHNEDYI-----------NDNDIRIGDNVIVKKAGEIIPQVISSVKEDRKGDEKLFEMPK 398 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C VVR K + C A+ + HF SR+A NI+ LG++ L+ Sbjct: 399 NCPVCGKEVVRQEGNSAVKCINV-------DCPAKISREIIHFASREAMNIDTLGERVLE 451 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + + I+ +DI+ L+ +++ IE++ G+ SV+N+ ++I K + SLE Sbjct: 452 TLIEKD----LIQDVSDIYKLEDKKK----DIESLEKMGEKSVSNMLNAIEKSKENSLED 503 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F+L I VG + A+ LAK + + N + ++ + +GD +A I Sbjct: 504 LLFALSINLVGKQGAKLLAKRFKTMDNLINA----------SYEDIVDINEIGDKMATEI 553 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + F++NP + +E L +E+N + E V TGTL K +R +A++ + Sbjct: 554 INFFKNPSKLALIERLKSVGVNMEYINEENEELKFEGMTFVLTGTLSKYKRSEAKKIIEN 613 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G VS+ +S+KT ++ G+N GSK EKA++LGVKI++E++F ++ Sbjct: 614 YGGKVSSSVSKKTTYVLAGENAGSKEEKAKELGVKIISEDEFENMI 659 >gi|94676849|ref|YP_588544.1| DNA ligase, NAD-dependent [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|123260587|sp|Q1LU20|DNLJ_BAUCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|94219999|gb|ABF14158.1| DNA ligase, NAD-dependent [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 671 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 251/711 (35%), Positives = 385/711 (54%), Gaps = 49/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++Q + + L Q++ Y + YY P + D EYD L + + +PDL + + Sbjct: 1 MKQIEQYIEQLRQQLRYWNFLYYAKDAPEVSDVEYDWLMMKLRELERQWPDLKTA---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P IG + KV H +P LSL+ I+N F RI Q ++ + + E K Sbjct: 58 PTQHIGYKAQSKFRKVIHEVPMLSLDHIFNDTSFLAFDRRIRNRLQYGNNY-LTYCCELK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL--SLNIPEIIEVRGEV 191 DG +++ Y+ GK + AA RGDGH GEDV+ IR I +IP L +IP +IE+RGEV Sbjct: 117 FDGIAVSLLYKHGKLIRAATRGDGHIGEDVTDNIRTICSIPLQLKDDGHIPRLIEIRGEV 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249 +S++ F LN+ K +ANPRNAA+G LR+++P+ TR L+FF +G+G+ + Sbjct: 177 IMSEDAFRHLNETAKKNKSKRFANPRNAAAGSLRQVDPSITATRLLSFFCYGVGRIDSKK 236 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E+LQ+ + G PV+N R ++ +Y+ + +RS L ++IDG+V KV+ Sbjct: 237 IPAAHLELLQQFKIWGLPVSNYRRYCVGHQEVLDFYSYVSKVRSKLGFNIDGIVIKVNAL 296 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+QLG AR+PRW I++K + T + +ID Q+GRTGI+TPVARL+PV I GA I+ Sbjct: 297 VQQQQLGFVARAPRWAIAYKLPANEQLTEIQNIDFQVGRTGIITPVARLKPVYISGAYIS 356 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NA+LH+ IK L +R+GD V+++ AG +IP++V+++V++R P Sbjct: 357 NASLHSFAEIKRL-----------GLRIGDTVVIRLAGNIIPQIVNVVVSKRSIKTSPVL 405 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 +P +CP+C S+V ++ KT CT G+ CSAQ E LKHFVSR A NI G+G + Sbjct: 406 YPLYCPVCGSKVKQNNKEKTI------ICTAGMICSAQLKEALKHFVSRRAMNIYGMGGK 459 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + I+ P D+F L + Q + G L D+I + + Sbjct: 460 IIDQLVDLK----IIQNPVDLFRLNQDQL------TCLKNMGQKKTKKLLDAIEYAKKTT 509 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF++++GIR +G A LA YY D SL ++ +G I+A Sbjct: 510 FARFLYAIGIREIGETKAAYLADYYKHIDALMAA----------DIESLTKIQDIGIIVA 559 Query: 610 QAIVEFYQNPRNICAVEALL--KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 ++ F+ N NI +E L K + EKN + K +VFTGTL + R +A Sbjct: 560 TNVLNFFHNKHNIAIIEELCSPKIGIKFLSTLEKN--NYFSGKNIVFTGTLAFLSREEAI 617 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + LGA + + +S K D++I G N G KL KA+QL +KI+ E +F +L Sbjct: 618 DMLIALGARIRSSVSSKIDLLIAGKNTGFKLTKAKQLQIKIIEEAEFYQIL 668 >gi|149006206|ref|ZP_01829918.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP18-BS74] gi|225856757|ref|YP_002738268.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae P1031] gi|307127352|ref|YP_003879383.1| NAD-dependent DNA ligase [Streptococcus pneumoniae 670-6B] gi|254781432|sp|C1CKI0|DNLJ_STRZP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|147761983|gb|EDK68945.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP18-BS74] gi|225725530|gb|ACO21382.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae P1031] gi|306484414|gb|ADM91283.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae 670-6B] gi|332075451|gb|EGI85920.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA41301] Length = 652 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 213/700 (30%), Positives = 354/700 (50%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K ++ L ++ + YY P + DSEYD L R + A+P+ + + P +++ Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 60 GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YEKG V RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q + L Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN A I ++ E+ R LPYDIDG+V KV++ + Q++LG Sbjct: 232 KYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCN 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S ++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A ++ ADI+ LQ + G + S LY +I + S E+ +F LG Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG++ ++ L +Y+ S +N Q D + + +G +IA+++ ++ Sbjct: 503 IRHVGSKASQLLLQYFHSIENLYQA----------DSEEVASIESLGGVIAKSLQTYFAT 552 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + + L + + + + +V TG L++++R +A+ + LGA V Sbjct: 553 EGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KTD+++VG + GSKL+KAQ+LG+++ +E L Sbjct: 613 TGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652 >gi|148998387|ref|ZP_01825829.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP11-BS70] gi|168576158|ref|ZP_02722052.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae MLV-016] gi|194398076|ref|YP_002037745.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae G54] gi|225861080|ref|YP_002742589.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae Taiwan19F-14] gi|298230922|ref|ZP_06964603.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254162|ref|ZP_06977748.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502866|ref|YP_003724806.1| DNA ligase (NAD(+)) [Streptococcus pneumoniae TCH8431/19A] gi|254781424|sp|B5E4M9|DNLJ_STRP4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781433|sp|C1CRL7|DNLJ_STRZT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|147755784|gb|EDK62829.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP11-BS70] gi|183577935|gb|EDT98463.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae MLV-016] gi|194357743|gb|ACF56191.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae G54] gi|225727034|gb|ACO22885.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae Taiwan19F-14] gi|298238461|gb|ADI69592.1| DNA ligase (NAD(+)) [Streptococcus pneumoniae TCH8431/19A] gi|327389325|gb|EGE87670.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA04375] gi|332075071|gb|EGI85542.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA17545] Length = 652 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 213/700 (30%), Positives = 354/700 (50%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K ++ L ++ + YY P + DSEYD L R + A+P+ + + P +++ Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 60 GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YEKG V RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q + L Sbjct: 173 DQVNQVRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN A I ++ E+ R LPYDIDG+V KV++ + Q++LG Sbjct: 232 KYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCN 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S ++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A ++ ADI+ LQ + G + S LY +I + S E+ +F LG Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG++ ++ L +Y+ S +N Q D + + +G +IA+++ ++ Sbjct: 503 IRHVGSKASQLLLQYFHSIENLYQA----------DSEEVASIESLGGVIAKSLQTYFAT 552 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + + L + + + + +V TG L++++R +A+ + LGA V Sbjct: 553 EGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KTD+++VG + GSKL+KAQ+LG+++ +E L Sbjct: 613 TGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652 >gi|189485424|ref|YP_001956365.1| DNA ligase (NAD+) [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|254781446|sp|B1H072|DNLJ_UNCTG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|170287383|dbj|BAG13904.1| DNA ligase (NAD+) [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 674 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 244/716 (34%), Positives = 379/716 (52%), Gaps = 54/716 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + + + L +E+ H+ YY+ + P I DSEYD L + + I P A P Sbjct: 1 MIMGNIQNRIDYLRKELIRHNGLYYESNNPEISDSEYDNLAKELEQIEKENPLFAL---P 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P KI G ++ S ++ HS P LSL+ ++ ++ K+ RI + + + FT+E Sbjct: 58 DSPTKKISGFVSSSFEQIKHSSPMLSLDNTYSQKETAKWYERIEKNLN---NKNTEFTIE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGE 190 PKIDG ++ Y G A RGDG +GED++ I+ + IP L N P E+RGE Sbjct: 115 PKIDGVSASLTYINGSLTAGATRGDGETGEDITENIKKVKNIPYKLKADNPPYFFELRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VYI K+DF LN+E++ + +AN RNAASG LR+ NP R L FFVH LGK Sbjct: 175 VYIDKSDFRKLNEEILMSVGQKFANSRNAASGSLRQKNPQITAERKLRFFVHSLGKIDGK 234 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + Q + LQ R GF + + + ++ I+ + M + R L Y+IDGLV KV+ Sbjct: 235 QFESQSDFLQYCRKCGFQLQDNFKICHSLKEIMDFMEIMINNRDLLHYEIDGLVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQK+LG +SPRW I+ KF KQA+T+L I +Q+GRTGI+TP A LE V + G I+ Sbjct: 295 QLQKELGYTNKSPRWAIAFKFPAKQATTKLSRIRVQVGRTGIITPSAILESVTLAGVTIS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 +ATLHN + I+ L ++ GD VL++RAG+VIPK+V + + + F Sbjct: 355 HATLHNFEEIERL-----------NVNEGDTVLIERAGDVIPKIVKV---VKKENRGFFK 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C S +V++ + A+RC C AQ L HFVSR+A +I+G GK Sbjct: 401 PPHNCPSCNSGIVKENEEE-----VAYRCINP-ECPAQFRRHLIHFVSRNAMDIDGFGKA 454 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D F + I++ ADI+ L+ + F + +NL ++ + Sbjct: 455 VIDQFLDRKK----IQVLADIYYLKYDDFIK------LDLFKEKKTSNLMKAVAASKKHP 504 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L + +F+LGIR +G +++ +AK + S + RVP +G I+A Sbjct: 505 LSKLLFALGIRRIGEKVSEIIAKKFKSMEALFNA----------SIEDFTRVPEIGSILA 554 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++ EF++N ++ L+ I + ++ + K V TG L+ R +A + Sbjct: 555 LSLKEFFENKTVRNVIDNLIAAGVNMIEPEAEQSGTQFDGKMFVLTGELKNHTREQAGKI 614 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF------LFLLQ 719 + LG V++ +S+KTD I+ G N GSKL+KA++L VKI++E +F L L++ Sbjct: 615 IRSLGGKVASSVSKKTDYIVAGVNAGSKLKKAKELNVKIVDEAEFDILTGKLSLIE 670 >gi|148994566|ref|ZP_01823725.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP9-BS68] gi|168488962|ref|ZP_02713161.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP195] gi|147927160|gb|EDK78197.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP9-BS68] gi|183572496|gb|EDT93024.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP195] gi|332073479|gb|EGI83958.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA17570] Length = 652 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 212/700 (30%), Positives = 355/700 (50%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K ++ L ++ + YY P + DSEYD L R + A+P+ + + P +++ Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 60 GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YEKG V RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + + + S Q + L Sbjct: 173 DQVNQVRQENGEPEFANPRNAAAGTLRQLDTAVVAKRS-LATFLYQEASPSTRDSQEKGL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN A I ++ E+ R LPYDIDG+V KV++ + Q++LG Sbjct: 232 KYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCN 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S ++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A ++ ADI+ LQ + G + S LY +I + S E+ +F LG Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG++ ++ L +Y+ S +N +Q D + + +G +IA+++ ++ Sbjct: 503 IRHVGSKASQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFAT 552 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + + L + + + + +V TG L++++R +A+ + LGA V Sbjct: 553 EGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KTD+++VG + GSKL+KAQ+LG+++ +E L Sbjct: 613 TGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652 >gi|225858927|ref|YP_002740437.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae 70585] gi|254781425|sp|C1C7B1|DNLJ_STRP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|225720821|gb|ACO16675.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae 70585] Length = 652 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 213/700 (30%), Positives = 355/700 (50%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K ++ L ++ + YY P + DSEYD L R + A+P+ + + P +++ Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 60 GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YEKG V RGDG GE+++ ++ + IP L+ + I VRGE Y+ + F Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLTEEL--DITVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q + L Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN A I ++ E+ R LPYDIDG+V KV++ + Q++LG Sbjct: 232 KYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCN 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S ++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A ++ ADI+ LQ + G + S LY +I + S E+ +F LG Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG++ ++ L +Y+ S +N Q D + + +G +IA+++ ++ Sbjct: 503 IRHVGSKASQLLLQYFHSIENLYQA----------DSEEVASIESLGGVIAKSLQTYFAT 552 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + + L + + + + +V TG L++++R +A+ + LGA V Sbjct: 553 EGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KTD+++VG + GSKL+KAQ+LG+++ +E L Sbjct: 613 TGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652 >gi|77414096|ref|ZP_00790264.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 515] gi|77159848|gb|EAO70991.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 515] Length = 648 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 219/698 (31%), Positives = 360/698 (51%), Gaps = 51/698 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 ++ L ++ + YY P + DS+YD L R + P+ PN P +++GG Sbjct: 1 MNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEEQHPENIL---PNSPTHRVGG 57 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + K H P SL+ ++ E+L F R+ + + + E KIDG ++ Sbjct: 58 LVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRVK-----AEFPTASYMAELKIDGLSVS 112 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + Y G A RGDG+ GE+++ ++ + IP L L+ I VRGE Y+ K F A Sbjct: 113 LTYVNGILQVGATRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYLPKESFEA 170 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260 +N E A G + +ANPRNAA+G LR+LN + + S + Q ++L++ Sbjct: 171 INIEKRANGEQEFANPRNAAAGTLRQLNTGIV-AKRKLATFLYQEASPTQKETQDDVLKE 229 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 + GF VN+ +++ I + ++ R +LPYDIDG+V KV+ ++Q++LG + Sbjct: 230 LESYGFSVNHHRLISSSMEKIWDFIQTIEKDRISLPYDIDGIVIKVNSLAMQEELGFTVK 289 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 +PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 290 APRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI- 348 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 +DIR+GD V+V +AG++IP V+++++++R+ P CP C S Sbjct: 349 ----------AEKDIRIGDTVVVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSCGSE 397 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 +V + A RC L C Q ERL HF SRDA NI G G ++ F Sbjct: 398 LVHFEDE------VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVEKLFD---- 446 Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560 A I ADI+ L + + G + S T +Y +I + S E+ +F LGIR Sbjct: 447 AHLIADVADIYRLSIEDLLT------LDGIKEKSATKIYHAIQSSKENSAEKLLFGLGIR 500 Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 HVG++ +R L + + + + +Q S+ + +G +IA+++ F++ Sbjct: 501 HVGSKASRLLLEEFGNLRQLSQASQ----------ESIASIDGLGGVIAKSLHTFFEKEE 550 Query: 621 NICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 +E L V+ + + +++ +V TG L+K+ R++A+E + LGA V+ Sbjct: 551 VDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEKLQNLGAKVTG 610 Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +S+KTD+I+ G + GSKL KAQ LG+ I +E+ L L Sbjct: 611 SVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 648 >gi|327461089|gb|EGF07422.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1057] Length = 652 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 223/701 (31%), Positives = 360/701 (51%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ +S L + ++ + YY +P + DSEYD L R + +P P+ P ++ Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ K H P SL+ ++ E+L F RI + + + + E KIDG Sbjct: 59 VGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRIRK-----EFPQVSYLCELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YEKG V A RGDG GE+++ ++ + IP L + I VRGE Y+ K Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N G +ANPRNAA+G LR+L+ + N + S A Q E+ Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQADSQEEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L K+ LGF VN A++ + + ++ R +L Y+IDG+V KV++ ++Q++LG Sbjct: 231 LNKLAALGFSVNPTHILADSIEAVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR D V+V +AG++IP V+ ++ ++R + PS CP C Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEPL-EIPSHCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 ++ A I+ L + + F + S LY +I + S ER +F L Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYTAIQASKENSAERLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ +R L + + +Q + + +G +IAQ++ +++ Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + L +E +K V + + +V TG LQK+ R++A+E + LGA Sbjct: 552 QEGSQILLAELQEEGVNLDYLGQKAVADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 VS +S+KTD+++ G + GSKL KAQ+LG++I +E+ L Sbjct: 612 VSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDEDWLDSL 652 >gi|324993931|gb|EGC25850.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK405] gi|324994750|gb|EGC26663.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK678] gi|327463193|gb|EGF09514.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1] Length = 652 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 217/701 (30%), Positives = 354/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ +S L + ++ + YY +P + DSEYD L R + +P P+ P ++ Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ K H P SL+ ++ E+L F RI + + + + E KIDG Sbjct: 59 VGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRIRK-----EFPQVSYLCELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YEKG V A RGDG GE+++ ++ + I L + I VRGE Y+ K Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDILLTLKEPL--DITVRGECYMPKAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N G +ANPRNAA+G LR+L+ + N + S Q + Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQVGSQEAV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L K+ LGF VN A++ + + ++ R +L Y+IDG+V KV++ ++Q++LG Sbjct: 231 LNKLADLGFSVNPTHILADSIEAVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR D V+V +AG++IP V+ ++ ++R + PS CP C Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVDSKRVSEEHL-EIPSHCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 ++ A I+ L + + F + S LY +I + S ER +F L Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYIAIQASKENSAERLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ +R L + + +Q + + +G +IAQ++ +++ Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSIGTVIAQSLHTYFE 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + L + + + + +V TG LQK+ R++A+E + LGA Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 VS +S+KTD+++ G + GSKL KAQ+LG++I +E+ L Sbjct: 612 VSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDEDWLDSL 652 >gi|289550377|ref|YP_003471281.1| DNA ligase [Staphylococcus lugdunensis HKU09-01] gi|289179909|gb|ADC87154.1| DNA ligase [Staphylococcus lugdunensis HKU09-01] Length = 667 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 240/708 (33%), Positives = 376/708 (53%), Gaps = 53/708 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + ++ L ++ + YY P + DSEYD L I P+ + + Sbjct: 1 MDNLQHRVNELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIQIEADHPEYKTT---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N EDL++F RI + + E K Sbjct: 58 PTVRVGGEAQSSFEKVRHDTPMLSLGNAFNEEDLKRFDQRIRDHIG-----EVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++YE GKFV RGDG +GED++ +R I IP L + EVRGE Y+ Sbjct: 113 IDGLAVSLKYENGKFVQGLTRGDGTTGEDITENLRTIHAIPLKLKEPLN--FEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + F++LN + +P+ANPRNAA+G LR+L+ R L+ F++ + S+ A Sbjct: 171 PRASFMSLNKQKEKNNEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDFSDFNAT 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q + L ++ LGF N + G+++Y + + R +L YDIDG+V KV++ + Q Sbjct: 231 TQSDALDELDRLGFKTNKERECVSDIDGVLAYIEKWTAKRESLAYDIDGIVIKVNDLAQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +++G +SPRW I++KF ++ TRLLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVVTRLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V+VK+AG++IP+VV I+ R DA+ + P+ Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVVKKAGDIIPEVVKSIIERRPNDAETYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C ++VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHKLVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++ E I+ ADIF L + G V NL +I+K ++ SLE Sbjct: 453 QLYQHE----LIKDVADIFYLTEEDL------LPLERMGKKKVENLLQAIDKAKSNSLEH 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+GA+ + LA+ Y + + LI + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGAKASYVLAEKYETIERLLTVTE----------DELISIHDIGDKLAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQRHKAQE 668 V + +N + L + + K E ++K +V TG L+++ R +A + Sbjct: 553 VTYLENEDIQSLISKLANKDVNMTFKGVKISELAGHPEFQDKTIVLTGKLEQMTRKEAAD 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 ++ GA V+ +++ TD++I G++ GSKL KAQ+ G +I +E F+ Sbjct: 613 WLQLQGAKVTNSVTKNTDLVIAGEDAGSKLTKAQKFGTEIWSESDFIS 660 >gi|238854176|ref|ZP_04644523.1| DNA ligase, NAD-dependent [Lactobacillus gasseri 202-4] gi|238833252|gb|EEQ25542.1| DNA ligase, NAD-dependent [Lactobacillus gasseri 202-4] Length = 668 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 212/715 (29%), Positives = 363/715 (50%), Gaps = 50/715 (6%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + L+ QA +++ L +++ + YY P++ D+ YD + + FPDL S Sbjct: 1 MAVLTHNQASQKVDELRKKLDEWAEDYYAKDAPVVEDAVYDKAYQELVELEKQFPDLVTS 60 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + ++GGE+ L KV H IP LS+ +++ ++L++F RI + + + + Sbjct: 61 ---DSITQRVGGEIKSDLSKVEHPIPMLSMGDVFSKDELKEFDERITKLVG----HPVAY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ Y GK A+ RG+G GEDV+A + I IP+ L + EVR Sbjct: 114 NVELKIDGLSLSLEYTAGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPEPL--TTEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+ K F LN E G + +ANPRNAA+G LR+L+ + Sbjct: 172 GECYMEKEAFAKLNAERDEKGEQVFANPRNAAAGSLRQLDARITKKRNLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ + +M LGF N R+ + + + +E + R+ L Y IDG+V KVD+ Sbjct: 232 KNITSQHQAIDEMNRLGFHTNQTGRRLESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 SLQ +LG + PRW I++KF ++ T + +I+ +GRTG++TP A ++PV + G ++ Sbjct: 292 LSLQNELGNTVKVPRWEIAYKFPPEEQETVVKEIEWTVGRTGVVTPTAVMDPVQLAGTVV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN DY++ + +R+GD V + +AG++IP++ +++N+R D++P+ Sbjct: 352 SRASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLNKRPKDSEPY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C +V + A RC + C AQ E + HF SR A NI GLG Sbjct: 401 QIPNKCPSCGQDLVHLQDE------VALRCINPM-CPAQVEEGIIHFASRGAMNIMGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + AD++ L Q + + F D S+TNL SI + Sbjct: 454 RIVKQLIDKN----FVNDVADLYHLSNEQLS------QLDHFKDKSITNLLTSIENSKQN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S E +F LGI HVGA+ AR + + Y + + +Q L + +G+ I Sbjct: 504 SAELLLFGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIGETI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A+++ ++ P ++ L E+ + + K +V TG L R + Sbjct: 554 AESLTAYFNQPSAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKLSDFTRSE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + LGA V+ +S+KTD +I G + GSK +KA++L V ++ E++ + +++ Sbjct: 614 FTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIVKIEK 668 >gi|325696052|gb|EGD37943.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK160] Length = 652 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 220/701 (31%), Positives = 356/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ +S L + ++ + YY +P + DSEYD L R + +P P+ P ++ Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ K H P SL+ ++ E+L F RI + + + + E KIDG Sbjct: 59 VGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRIRK-----EFPQVSYLCELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YEKG V A RGDG GE+++ ++ + IP L + I VRGE Y+ K Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N G +ANPRNAA+G LR+L+ + N + S Q + Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQVGSQEAV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L K+ LGF VN A++ + + ++ R +LPY+IDG+V KV++ ++Q++LG Sbjct: 231 LNKLADLGFSVNPTHILADSIEAVWEFIEKIAQERDSLPYEIDGIVIKVNDLAVQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR D V+V +AG++IP V+ ++ ++R + PS CP C Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEPL-EIPSHCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 ++ A I+ L + + F + S LY +I + S ER +F L Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYTAIQASKENSAERLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ +R L + + +Q + + +G +IAQ++ +++ Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + L + + + + +V TG LQK+ R++A+E + LGA Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 VS +S+KTD+++ G + GSKL KAQ+LG++I NE+ L Sbjct: 612 VSGSVSKKTDLVVAGADAGSKLAKAQELGIEIRNEDWLDSL 652 >gi|327474802|gb|EGF20207.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK408] Length = 652 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 217/701 (30%), Positives = 355/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ +S L + ++ + YY +P + DSEYD L R + +P P+ P ++ Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEKKYP---TDILPDSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ K H P SL+ ++ E+L F R+ + + + + E KIDG Sbjct: 59 VGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRVRK-----EFPQVSYLCELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YEKG V A RGDG GE+++ ++ + IP L + I VRGE Y+ K Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N G +ANPRNAA+G LR+L+ + N + S Q + Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQVGSQEAV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L K+ LGF VN A++ + + ++ R +L Y+IDG+V KV++ ++Q++LG Sbjct: 231 LNKLADLGFSVNPTHILADSIEAVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR D V+V +AG++IP V+ ++ ++R + PS CP C Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEPL-EIPSHCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 ++ A I+ L + + F + S LY +I + S ER +F L Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYTAIQASKENSAERLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ +R L + + +Q + + +G +IAQ++ +++ Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + L + + + + +V TG LQK+ R++A+E + LGA Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 VS +S+KTD+++ G + GSKL KAQ+LG++I +E+ L Sbjct: 612 VSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDEDWLDSL 652 >gi|146318834|ref|YP_001198546.1| NAD-dependent DNA ligase LigA [Streptococcus suis 05ZYH33] gi|166216250|sp|A4VVK7|DNLJ_STRSY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145689640|gb|ABP90146.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Streptococcus suis 05ZYH33] Length = 652 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 210/701 (29%), Positives = 358/701 (51%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +S L ++ + YYQ +P + D+EYD L R + A P+L P+ P ++ Sbjct: 2 KTRISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELETAHPELIL---PDSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG+M K +H P SL+ ++ E+L F R+ + + + E KIDG Sbjct: 59 VGGKMLDGFEKYSHVYPLFSLQDAFSREELEAFDQRVRK-----EFPQATYICELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G V A RGDG GE+++ ++ + +P L + I VRGE Y+ K Sbjct: 114 SISLTYEAGNLVVGATRGDGSVGENITENLKRVADVPLTLPEAV--DITVRGECYMPKAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N + G + NPRNAA+G LR+L+ + + S A Q ++ Sbjct: 172 FDRVNKQRQEAGEAEFVNPRNAAAGTLRQLDTGVV-AQRGLATFLYQEASPSEATSQSQV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+K+ LGF N+ A + + ++ R LPY+IDG+V KV++ ++Q++LG Sbjct: 231 LEKLDALGFVTNHEYCLAESIDDTWDFIEKIAERRDDLPYEIDGVVIKVNDLAIQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW +++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAVAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+ ++ R PS CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLKVVDKYRKEQEI-MPIPSHCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 QS + + A RC + C +Q + +L+HF SRDA NI GLG ++ F Sbjct: 399 QSDLQHYEDE------VALRCINPI-CPSQLMSKLEHFASRDAMNIAGLGSSIVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + ADI+ L + + GF + S LY +I ++ S E +F L Sbjct: 450 --GAGLVHDVADIYKLTVDDLLT------LEGFKEKSANKLYQAIQTSKSNSAECLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ ++ L + + + A D ++ + +G +IA+++ F+ Sbjct: 502 GIRHVGSKASKILVEKFGDLETLAFA----------DQEAIASLEGLGQVIAKSLTTFFA 551 Query: 618 NPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + L + V+ + + ++ + +V TG L++++R++A+ + LGA Sbjct: 552 SEGAQQLLAELKEAKVNLTYLGQVVDENAALSGMTVVLTGKLERMKRNEAKAKLEALGAN 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KT++++ G + GS L KAQ+LG++I +E L Sbjct: 612 VAGSVSKKTNLVVAGTDAGSTLTKAQELGIEIKDEAWLESL 652 >gi|324991571|gb|EGC23504.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK353] Length = 652 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 219/701 (31%), Positives = 358/701 (51%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ +S L + ++ + YY +P + DSEYD L R + +P P+ P ++ Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ K H P SL+ ++ E+L F R+ + + + + E KIDG Sbjct: 59 VGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRVRK-----EFPQVSYLCELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YEKG V A RGDG GE+++ ++ + IP L + I VRGE Y+ K Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N G +ANPRNAA+G LR+L+ + N + S A Q E+ Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQADSQEEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L K+ LGF VN A++ + + ++ R +L Y+IDG+V KV++ ++Q++LG Sbjct: 231 LNKLADLGFSVNPTHILADSIEAVWKFIEKIAQERDSLAYEIDGIVIKVNDLAVQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR D V+V +AG++IP V+ ++ ++R + PS CP C Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEAL-EVPSHCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 ++ A I+ L + + F + S LY +I + S ER +F L Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYTAIQASKENSAERLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ +R L + + +Q + + +G +IAQ++ +++ Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + L + + + + +V TG LQK+ R++A+E + LGA Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAAADAVLSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 VS +S+KTD+++ G + GSKL+KAQ+LG++I +E+ L Sbjct: 612 VSGSVSKKTDLVVAGQDAGSKLDKAQELGIEIRDEDWLDSL 652 >gi|76798177|ref|ZP_00780429.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 18RS21] gi|77405561|ref|ZP_00782652.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B] gi|77410701|ref|ZP_00787060.1| DNA ligase, NAD-dependent [Streptococcus agalactiae CJB111] gi|76586485|gb|EAO62991.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 18RS21] gi|77163237|gb|EAO74189.1| DNA ligase, NAD-dependent [Streptococcus agalactiae CJB111] gi|77175868|gb|EAO78646.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B] Length = 648 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 220/698 (31%), Positives = 360/698 (51%), Gaps = 51/698 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 ++ L ++ + YY P + DS+YD L R + P+ PN P +++GG Sbjct: 1 MNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEKQHPENIL---PNSPTHRVGG 57 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + K H P SL+ ++ E+L F R+ + + + E KIDG ++ Sbjct: 58 LVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRVK-----AEFPTAAYMAELKIDGLSVS 112 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + Y G A RGDG+ GE+++ ++ + IP L L+ I VRGE Y+ K F A Sbjct: 113 LTYVNGVLQVGATRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYLPKESFEA 170 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260 +N E A G + +ANPRNAA+G LR+LN + + S + Q ++L++ Sbjct: 171 INIEKRANGEQEFANPRNAAAGTLRQLNTGIV-AKRKLATFLYQEASPTQKETQDDVLKE 229 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 + GF VN+ +++ I + ++ R +LPYDIDG+V KV+ ++Q++LG + Sbjct: 230 LESYGFSVNHHRLISSSMEKIWDFIQTIEKDRVSLPYDIDGIVIKVNSLAMQEELGFTVK 289 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 +PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 290 APRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI- 348 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 +DIR+GD V+V +AG++IP V+++++++R+ P CP C S Sbjct: 349 ----------AEKDIRIGDTVVVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSCGSE 397 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 +V A RC L C Q ERL HF SRDA NI G G ++ F Sbjct: 398 LVHFEGE------VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVEKLFD---- 446 Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560 A I ADI+ L S + + G + S T +Y +I + S E+ +F LGIR Sbjct: 447 AHLIADVADIYRL------SIENLLTLDGIKEKSATKIYHAIQSSKENSAEKLLFGLGIR 500 Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 HVG++ +R L + + + + +Q S+ + +G +IA+++ F++ Sbjct: 501 HVGSKASRLLLEEFGNLRQLSQASQ----------ESIASIDGLGGVIAKSLHTFFEKEE 550 Query: 621 NICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 +E L V+ + + +++ +V TG L+K+ R++A+E + LGA V+ Sbjct: 551 VDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEKLQNLGAKVTG 610 Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +S+KTD+I+ G + GSKL KAQ LG+ I +E+ L L Sbjct: 611 SVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 648 >gi|329726878|gb|EGG63336.1| DNA ligase (NAD+) [Staphylococcus epidermidis VCU144] Length = 665 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 241/708 (34%), Positives = 378/708 (53%), Gaps = 53/708 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ +K + L ++ + YY P + D+EYD L I +P+ + Sbjct: 1 MQDVKKRVGKLHDLLNQYSYEYYVQDNPSVPDNEYDKLLHELIEIEEKYPEFK---STDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N EDLRKF RI K + + E K Sbjct: 58 PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRDSIGK-----VEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++YE G+FV RGDG +GED++ +R I IP + + EVRGE Y+ Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLN--FEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + F+ LN+E G +P+ANPRNAA+G LR+L+ R L+ F++ + +E A Sbjct: 171 PRRSFIHLNNEKEQNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L+++ LGF N + + G+++Y + S R +L YDIDG+V KV++ S Q Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRGSLSYDIDGIVIKVNDLSQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +++G +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V++K+AG++IP+VV I++ R +++ + P+ Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++++ I+ ADIF L+ + G V NL +I K + SLE Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDL------LPLERMGKKKVDNLLLAIEKSKEQSLEH 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + + + LI + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTES----------ELIEIQDIGDKLAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SE-IENKKLVFTGTLQKIQRHKAQE 668 V + +N +E L + + K K +V TG L+++ R++A E Sbjct: 553 VTYLENSDIRSLIEKLSNKNVNMSYKGIKTTEIEGHPDFSGKTIVLTGKLEQMTRNEASE 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 ++ GA V+ +++ TDI+I G + GSKL KA++ G +I E F+ Sbjct: 613 WLKMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFIE 660 >gi|114776845|ref|ZP_01451888.1| DNA ligase, NAD-dependent [Mariprofundus ferrooxydans PV-1] gi|114552931|gb|EAU55362.1| DNA ligase, NAD-dependent [Mariprofundus ferrooxydans PV-1] Length = 670 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 244/716 (34%), Positives = 380/716 (53%), Gaps = 52/716 (7%) Query: 12 LSIEQ-ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ++ + + L ++ H+ YY P+I D+EYD L R +++ +L Sbjct: 1 MTEKATLTARIEHLRSQLREHNYRYYILDAPVISDAEYDRLLRELESLEA---ELGEPVP 57 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P +G + TH LSL ++ ++ F+ RI ++ F + Sbjct: 58 ADSPTRTVGAPPSQVFTTRTHGEALLSLANAFSAGEVEAFVRRIGETL---PATTLSFIV 114 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIE 186 EPK+DG + +RYE+G AA RGDG +GEDV+ +R I IP L P ++E Sbjct: 115 EPKVDGLAVNLRYEQGSLTIAATRGDGTTGEDVTDNVRTIGDIPWQLKQVDGIELPTVLE 174 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGE+Y+S+ F ALN A G +P+ANPRNAA+G LR+L+ +R L FF +G G Sbjct: 175 VRGEIYMSREAFAALNARQDAEGAQPFANPRNAAAGSLRQLDARVTASRRLGFFAYGAGL 234 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 A Q ++L+++ GF A+ G+++ Y +++ R +PY+IDG+VYK Sbjct: 235 GGRAIASSQSQLLERLAGFGF-AVQKTACADDLEGLLATYQQLQQQRPDMPYEIDGVVYK 293 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 +DEF+LQ ++G ARSPRW I+HKF ++ +T + DI Q+GRTG++TPVA +EPV +GG Sbjct: 294 LDEFALQDRMGAVARSPRWAIAHKFPAEEVTTTVKDIIWQVGRTGVITPVADMEPVAVGG 353 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++ ATLHN D +K + + G RV+V+RAG+VIP+VV + + A Sbjct: 354 VVVSRATLHNIDELKR-----------KQVYAGARVIVRRAGDVIPEVVRAVDVD--AQA 400 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ CP+C + + R A RC+GGL+CSAQ ERL+HFVSR A +IEG Sbjct: 401 MMPKAPAQCPVCGASLFRLEGE------VAIRCSGGLSCSAQLTERLRHFVSRGAMDIEG 454 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 +G + + DI L S + G G+ +TNL SI + Sbjct: 455 MGDKLIARLVDEG-------CLNDIADLYEFDYASLHEW---QGMGEKKITNLQLSIERS 504 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + L RF+ +LGIRHVG+ A +LA ++ + Q D +L+ VP VG Sbjct: 505 KQRPLARFLHALGIRHVGSATAAALATHFADLELLMQA----------DEEALLAVPDVG 554 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +A +I+ F++ N ++ LL ++ + K +V TG+ I+R Sbjct: 555 PEVAGSILSFFREQHNRDVIDRLLAAGVTPEAPQQQQHDHPLAGKTVVLTGSFVAIKRRT 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 AQE + LG S +S++TD++I G+ GSKL KA++LG+++ +E Q L L + Sbjct: 615 AQEQLRALGVRPSGSVSKQTDLVIAGEKAGSKLTKARELGIEVADEAQLLSWLNWH 670 >gi|15903068|ref|NP_358618.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae R6] gi|116516470|ref|YP_816476.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae D39] gi|81449679|sp|Q8DPS9|DNLJ_STRR6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|122278638|sp|Q04KH2|DNLJ_STRP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|15458641|gb|AAK99828.1| DNA ligase [Streptococcus pneumoniae R6] gi|116077046|gb|ABJ54766.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae D39] Length = 652 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 213/700 (30%), Positives = 354/700 (50%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K ++ L ++ + YY P + DSEYD L R + A+P+ + + P +++ Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 60 GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YEKG V RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q + L Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN A I ++ E+ R LPYDIDG+V KV++ + Q++LG Sbjct: 232 KYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCN 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S ++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A ++ ADI+ LQ + G + S LY +I + S E+ +F LG Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG++ ++ L +Y+ S +N Q D + + +G +IA+++ ++ Sbjct: 503 IRHVGSKASQLLLQYFHSIENLYQA----------DSEEVASIESLGGVIAKSLQTYFAA 552 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + + L + + + + +V TG L++++R +A+ + LGA V Sbjct: 553 EGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KTD+++VG + GSKL+KAQ+LG+++ +E L Sbjct: 613 TGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652 >gi|33864448|ref|NP_896008.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus str. MIT 9313] gi|81576658|sp|Q7V3Z9|DNLJ_PROMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|33641228|emb|CAE22358.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9313] Length = 696 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 214/734 (29%), Positives = 352/734 (47%), Gaps = 65/734 (8%) Query: 12 LSIEQAR--KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 ++ K + L Q ++ YY P + D+ YD L R + L Sbjct: 1 MTPTSITPPKRAAELRQLLNQAAHSYYVLDTPTMEDAVYDRLYRELLNLEAKDSSLL--- 57 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ-----KKDDN 124 P+ P +IGG V H IP LSL+ +N+++L + R+ + K Sbjct: 58 TPDSPTQRIGGAPAQGFASVQHRIPLLSLDNAFNVDELTGWYVRLAKLLGHQTNPKTPQP 117 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-E 183 + E KIDG + + YE G + AA RGDG +GE+++A +R I +IP L L P Sbjct: 118 DLSMVGELKIDGNALALSYEHGVLIRAATRGDGANGEEITANVRTIASIPLRLQLVHPPA 177 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHG 242 +EVRGE +I + F +N G +ANPRNA +G LR+L+P +R L+FF + Sbjct: 178 WLEVRGEAFIPNSTFADINTARGKRGDVAFANPRNACAGTLRQLDPKVVASRQLDFFAYT 237 Query: 243 LGKTSEIF--------AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 L Q+ LQ ++ +GF VN + +++ R Sbjct: 238 LHLPDNWQAKAHDPARPMNQWAALQWLQAIGFKVNPNTALLADLTAVENFFKLWDEDRHQ 297 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 LPY DG+V K+++ LQ+ G ++PRW I+ K+A ++A ++LL + Q+GRTG +TP Sbjct: 298 LPYATDGVVVKLNDLQLQETAGFTQKAPRWAIALKYAAEEAPSKLLRLTCQVGRTGAVTP 357 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VA E + + G ++ ATLHN + + L D+ GD ++V++AGE+IP+V+ Sbjct: 358 VAEFEAIPLAGTSVSRATLHNANRVSEL-----------DLHSGDTIVVRKAGEIIPEVI 406 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 ++ R AQ P CP C+S +VR+ + AA RC +C A L+H Sbjct: 407 GVLRELRPAGAQTLKLPHICPECRSDLVREEDE------AATRCVNS-SCPAILRGTLRH 459 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 +VS+ A +++GLG + ++ ++ AD++ L+ S G S Sbjct: 460 WVSKGALDVDGLGSKLIEQLVNR----GLVQSIADLYALEASLLASM------DRMGSKS 509 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 NL ++ ++ + ++ LGI HVG A++LAK + S A Sbjct: 510 TANLITALQASKSKPWHKQLYGLGIHHVGEVNAKALAKKFPSAATLATAACK-------A 562 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--------- 645 + V VG+ IAQ++ +++ P N + L K++ S+ +E ++ Sbjct: 563 PEQITSVFGVGNEIAQSLQQWFATPANQQLLAKL-KQLGISLEANEDELAHDTDQNQRTV 621 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 +E + V TGTL + R +AQ + G V+ +S+ T ++ G GSKL KA++L Sbjct: 622 SLEGQTFVLTGTLPTLSRSEAQALIEASGGKVNNSVSKNTSYVVAGVAAGSKLNKAEKLE 681 Query: 706 VKIMNEEQFLFLLQ 719 V ++N+E+ L LL Sbjct: 682 VTVLNQEELLKLLA 695 >gi|303254175|ref|ZP_07340287.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae BS455] gi|302598846|gb|EFL65880.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae BS455] Length = 652 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 211/700 (30%), Positives = 355/700 (50%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K ++ L ++ + YY P + DSEYD L R + A+PD + + P +++ Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDCLYRELVELETAYPDQVLA---DSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 60 GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKEVAHP-----TYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YEKG + RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 115 ISLTYEKGILLAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q ++L Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKVL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN A I + E+ R LPYDIDG+V KV++ + Q++LG Sbjct: 232 KHLEQLGFVVNPKRILAENIDEIWDFIQEVGEERDNLPYDIDGVVIKVNDLASQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRISEEKL-DIPTNCPSCD 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S ++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A ++ ADI+ L+ + G + S + LY +I + S E+ +F LG Sbjct: 450 -AADLVKDVADIYRLKEEDF------LLLEGVKEKSASKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG++ ++ L +++ S +N AQ D + + +G +IA+++ ++ Sbjct: 503 IRHVGSKASQLLLQHFHSIENLAQA----------DPEEVASIESLGGVIAKSLQTYFAT 552 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + + L + + + + +V TG L++++R +A+ + LGA V Sbjct: 553 EGSEILLRELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KTD+++ G + GSKL+KAQ+LG+++ +E L Sbjct: 613 TGSVSKKTDLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652 >gi|319441119|ref|ZP_07990275.1| NAD-dependent DNA ligase LigA [Corynebacterium variabile DSM 44702] Length = 702 Score = 497 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 209/722 (28%), Positives = 343/722 (47%), Gaps = 51/722 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S + + S+L EI +H D YY Y +P+I D+E+D + R ++ P++ Sbjct: 24 SPDDPAERWSALAAEIRHHRDLYY-YREPVITDAEFDTMMRELQSLEAEHPEVVTGP--- 79 Query: 73 GPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P ++ S V H LSL+ +++ +L++++ R S + E Sbjct: 80 SPTTEVAQPPVNSPFRNVAHREQMLSLDNVFDGGELKEWLDRT---------PSETYLTE 130 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEV 187 KIDG I + Y G+ A RGDG +GED++ R I IP LS +P ++E+ Sbjct: 131 LKIDGASIDLLYLDGRLETALTRGDGVTGEDITHNARTISDIPDRLSGTEEFPVPAVVEI 190 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT 246 RGE++I+ DF +N + A G+K +ANPRNAA+G +R+ NP + R L HGLG Sbjct: 191 RGEIFITVEDFATMNADRQAEGKKMFANPRNAAAGAMRQKNPAETAKRPLKLICHGLGAR 250 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 Q++ + + G PV+ +Q ++ +++ R +++DGLV KV Sbjct: 251 EGFEPASQHDAYRAIEAWGLPVSPYTKQVHSAEEVIAQVGYWGEHRHDATHEMDGLVVKV 310 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D Q+ LG +R+PRW I++K+ ++A T + I I +GRTG TP A + P + G+ Sbjct: 311 DSLDEQEDLGATSRAPRWAIAYKYPPEEAMTTVESIRIGMGRTGRATPFAVMSPTPVAGS 370 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ ATLHN + IR+GDRV++++AGEVIP+V+ + + R + Sbjct: 371 TVSMATLHNPTEAHR-----------KGIRLGDRVMIRKAGEVIPEVLGPVEDVRDGSER 419 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F F S CP C + + T + A RC C Q RL + R AF+I+ L Sbjct: 420 EFVFSSVCPECGTPLA-----PTKEGDADWRCPNTRYCPGQLQNRLNYLAGRGAFDIDAL 474 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++ + + +F+L TST G + L D++ + + Sbjct: 475 GERAASDLI----ASGVLPDEGRLFSLSADDLTSTNAYTTKAGKLNRPGELLLDNLEEAK 530 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + L R I +L IRHVG A++LA S + + + VG Sbjct: 531 QVDLWRVITALSIRHVGPTAAKALAATLQSIPAIDKA----------SVEEMAEIDGVGG 580 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRH 664 IIAQ++ +++ + V+A E + + +V TG+L+ R Sbjct: 581 IIAQSVKDWFAVDWHREIVDAWADAGVRMEQIVEASDLPEQTLAGLTVVVTGSLENFDRT 640 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 A+E V G + +S+ TD ++ G+ GSKL KA+ LGV +++E F LL + Sbjct: 641 SAKEAVESRGGKAAGSVSKNTDFLVAGEKAGSKLTKAEDLGVPVLDEAGFEKLLAEGPDA 700 Query: 725 LR 726 +R Sbjct: 701 VR 702 >gi|7674019|sp|Q9ZHI0|DNLJ_THEFI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+]; AltName: Full=Tfi DNA ligase Length = 670 Score = 497 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 241/718 (33%), Positives = 380/718 (52%), Gaps = 52/718 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E+AR+ ++ L I YH+ YY + P I D+EYD L R + FP+ P Sbjct: 1 MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEFK---SP 57 Query: 72 NGPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G + V H SL+ + E++ F R+ R +K +T+ Sbjct: 58 DSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERLERALGRK--RPFLYTV 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K+DG + + YE+G V+ A RGDG GE+V+ + IPTIPR L P+ +EVRGE Sbjct: 116 EHKVDGLSVNLYYEEGVLVFGATRGDGEVGEEVTQNLLTIPTIPRRLKGV-PDRLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VY+ FL LN+E+ G K + NPRNAA+G LR+ +P R L + LG E Sbjct: 175 VYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLEE 234 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K QYE+L ++ GFPV +G +A G+ Y + R LP++ DG+V K+D+ Sbjct: 235 SGLKSQYELLLWLKEKGFPVEHGYEKALGAEGVEEVYRRFLAQRHALPFEADGVVVKLDD 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +L ++LG AR+PR+ +++KF ++ TRLLD+ Q+GRTG +TPV LEPV I G+ + Sbjct: 295 LALWRELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGSEV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + TLHNE YI+ L DIR+GD VLV +AG VIP+V+ ++ R + +P Sbjct: 355 SRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGEERPI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 +P CP C R+V++ HRC L C A++ E ++H+ SR A +IEGLG+ Sbjct: 404 RWPETCPECGHRLVKE--------GKVHRCPNPL-CPAKRFEAIRHYASRKAMDIEGLGE 454 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + +R AD++ L++ + G+ S NL I + ++ Sbjct: 455 KLIERLLEK----GLVRDVADLYHLRKEDLLG------LERMGEKSAQNLLRQIEESKHR 504 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 LER +++LG+ VG +AR+LA+ + + + + + Sbjct: 505 GLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELLEVEEVGEL----------T 554 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A+AI+E ++P V L + + E VS + V TG L + R + + Sbjct: 555 ARAILETLKDPAFRDLVRRLKEAGVSMESKEE--VSDLLSGLTFVLTGELSR-PREEVKA 611 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 + +LGA V+ +SRKT ++VG+NPGSKLEKA+ LGV ++ EE+F L++ + Sbjct: 612 LLQRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVAVLTEEEFWRFLKEKGAPVP 669 >gi|237785838|ref|YP_002906543.1| NAD-dependent DNA ligase LigA [Corynebacterium kroppenstedtii DSM 44385] gi|237758750|gb|ACR18000.1| DNA ligase [Corynebacterium kroppenstedtii DSM 44385] Length = 686 Score = 497 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 213/722 (29%), Positives = 357/722 (49%), Gaps = 58/722 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + + + +SL ++ +H D YY S+P+I D+E+D L + + P+LA++ Sbjct: 1 MSTD-LQAQWNSLAADVRHHRDLYYN-SEPVISDAEFDHLFKTLQDLEADHPELAKNG-- 56 Query: 72 NGPLNKIGGEMNL---------SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P ++G + + V H SL+ +++ +L +++ R Sbjct: 57 -SPTEEVGAPVPTPTETSSAEVTFAPVRHIERLYSLDNVFSKSELLEWLHRT-------- 107 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----S 178 + + E KIDG I + Y G+ V AA RGDG +GED++ R I IP+ + Sbjct: 108 -PAPTYLTELKIDGLSIDLVYRDGELVSAATRGDGLTGEDITPNARTISDIPQTISPTDE 166 Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLN 237 +PE++EVRGEV+I +F +N + + GRKP+ANPRNAA+G LR+ NP + R L+ Sbjct: 167 YPVPELVEVRGEVFIGVEEFAVINADRVEQGRKPFANPRNAAAGSLRQKNPAETAKRNLS 226 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 HG+G Q++ + GF V+ ++ + +++ R + Sbjct: 227 MICHGIGAREGWEPSTQHDAYTALAAWGFRVSPYTKRVTSADEVIAQMEYWGEHRHDATH 286 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 ++DGLV KVD+ + Q+ LGE +R+PRW I++K+ ++ T L DI I IGRTG T A Sbjct: 287 EMDGLVVKVDDLAEQEDLGETSRAPRWAIAYKYPPEEVVTTLRDIRIGIGRTGRATTYAV 346 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 L+PV + G+ + ATLHN + + + +GDRV +++AGEVIP+V+ + Sbjct: 347 LDPVLVAGSTVARATLHNPSEVH-----------DKGVLIGDRVTIRKAGEVIPEVLGPV 395 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 + R +PF F + CP C + +V+ A RC C Q L R+ + Sbjct: 396 ADARDGSEKPFVFSTVCPECGTPLVQ-----AKADDADWRCPNTQGCPGQLLARMTYLAG 450 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R AF+I+ LG + +S ++ +++F L T+ G + + Sbjct: 451 RSAFDIDALGVSGIQDLIRS----GALTNESELFDLDESHLRLTSVFTTKAGKINATGKA 506 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L ++ + ++ L R I +L IRHVG AR+LA Y S + Sbjct: 507 LLKNLEEAKSTELWRVIVALSIRHVGPTAARALATKYGSLEAIRSASE----------EE 556 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657 L R+ VG IIA ++ ++ +I V+A ++ +E +V TGT Sbjct: 557 LARIDGVGSIIAASLCSWFAVDWHIKIVDAWAAAGVRMEDDKQQAQPQTLEGTTVVVTGT 616 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L+ R A+E + G + +S+KT+ ++VG N GSK KA+ LG++I++E+ F L Sbjct: 617 LEDFTRDSAKEAIISRGGRAAGSVSKKTNYVVVGANAGSKETKARDLGLRILDEDGFKEL 676 Query: 718 LQ 719 L+ Sbjct: 677 LE 678 >gi|328957928|ref|YP_004375314.1| NAD-dependent DNA ligase LigA [Carnobacterium sp. 17-4] gi|328674252|gb|AEB30298.1| NAD-dependent DNA ligase LigA [Carnobacterium sp. 17-4] Length = 645 Score = 497 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 241/691 (34%), Positives = 366/691 (52%), Gaps = 53/691 (7%) Query: 38 YSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLS 97 P I D++YD L A+ AFPDL + P +IGG + KV H +P LS Sbjct: 2 KDAPSIPDTDYDKLYNELVALEEAFPDLI---SNDSPTQRIGGTILPGFEKVVHEVPMLS 58 Query: 98 LEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157 L +N DL F RI + D + E KIDG +++ YEKGK V AA RGDG Sbjct: 59 LGNAFNEGDLLDFDRRIKKI----TDQPFSYICELKIDGLAVSLTYEKGKLVRAATRGDG 114 Query: 158 HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPR 217 GE+V+ IR + ++P L IEVRGE Y+ K+ F+ LN E G +ANPR Sbjct: 115 TVGENVTQNIRTVKSVPLRLKNPYS--IEVRGECYMPKDSFIKLNQEREENGEAIFANPR 172 Query: 218 NAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQAN 276 NAA+G LR L+P + R LN F++ +G E+ A Q + L ++ LG N+ R Sbjct: 173 NAAAGGLRNLDPKETAKRNLNTFLYTIGDFGELTAVSQEDALHQLDELGLRTNHDRRVFQ 232 Query: 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAS 336 T + +Y E + R+ LPY+IDG+V KV+EF++Q+++G ++PRW I++KF ++A Sbjct: 233 TIEEVWAYTQEFQEKRTALPYEIDGIVIKVNEFAVQEEVGFTVKAPRWAIAYKFPAEEAH 292 Query: 337 TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIR 396 T + DI+ +GRTG++TP A ++PV + G + A+LHNED I RDIR Sbjct: 293 TVIRDIEWSVGRTGVVTPTAIMDPVQLAGTTVQRASLHNEDLIH-----------ERDIR 341 Query: 397 VGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456 + D V+V +AG++IP+V +I++ER D+QP++ P+ CP C S ++ A Sbjct: 342 LLDTVVVHKAGDIIPEVTRVILDERPEDSQPYAIPTHCPACDSDLIHLEEE------VAL 395 Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516 RC C AQ E L HFVSR+A NI+GLG + L F+ + + AD++TL Sbjct: 396 RCMNPK-CPAQITEGLSHFVSRNAMNIDGLGIRVLMQMFEKD----MVHDVADLYTLTFD 450 Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576 Q + + + S NL ++I+ R+ SLER +F LGIRHVGA+ A+ +A+ + + Sbjct: 451 QLVT------LDKIKEKSANNLLNAIDASRSNSLERLLFGLGIRHVGAKAAKLIAERFET 504 Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS- 635 + Q ++I IA+++V ++ P ++ L Sbjct: 505 MEAVQQAEKDMIISIEGIGEI----------IAESVVAYFSLPEVNELIQELKNSQVNMN 554 Query: 636 ----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 V S K +V TG L R +A+E + LG V+ +S+KTD+++ G Sbjct: 555 YLGKKKVEVATVDSYFNGKTVVLTGKLTHFTREEAKERIENLGGNVTGSVSKKTDLVVAG 614 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + GSKL KA+ L + + +E+Q L L+ Sbjct: 615 EEAGSKLAKAESLNILVWDEDQLLETLEGEE 645 >gi|332523413|ref|ZP_08399665.1| DNA ligase (NAD+) [Streptococcus porcinus str. Jelinkova 176] gi|332314677|gb|EGJ27662.1| DNA ligase (NAD+) [Streptococcus porcinus str. Jelinkova 176] Length = 652 Score = 497 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 226/701 (32%), Positives = 361/701 (51%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 K + L ++ + YY P + D EYD L A+ +P+ + + P Sbjct: 2 EKRIIELTNLLNQYRQEYYTNDNPTVSDQEYDKLYHELLALETEYPEFIQK---DSPTQG 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F RI + + + E KIDG Sbjct: 59 VGGLILSGFEKYQHPYPLYSLQDAFSQEELVAFDRRIK-----LEFPIVTYVAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y+ GK V A RGDG GE+++ I+ I IP++L I I VRGE Y+SK+ Sbjct: 114 SISLNYKGGKLVTGATRGDGSVGENITENIKKIKDIPQILKEPI--DITVRGEAYMSKHS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N E G +ANPRNAA+G LR+L+ + + N + S Q + Sbjct: 172 FQMINVERQENGETEFANPRNAAAGTLRQLDTSIV-GKRNLASFLYQEASPSQESTQVAV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L K+ LGF VNN +++ I + E+++ R+ LPYDIDG+V KV + ++Q++LG Sbjct: 231 LDKLSYLGFSVNNHRMVSSSMEDIWQFIQEIEADRAQLPYDIDGIVIKVADLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D IGRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTIGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+ ++ ++R D +P P+ CP C Sbjct: 351 YI-----------AQKDIRIGDTVIVYKAGDIIPAVLRVVTDKR-KDQEPILIPNLCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 QS + + A RC L C + L+HF SR+A NI GLG ++ F Sbjct: 399 QSSLTHLEDE------VALRCINPL-CPSLIQRSLEHFASRNAMNIAGLGPAVVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A I ADI+ L R Q S + G + S L +I + S E+ +F L Sbjct: 450 --TAQLIHDVADIYRLSREQLLS------LEGIKEKSADKLLSAIADSKEKSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG + +R L + + + Q D ++ ++ +G +IA +I +++ Sbjct: 502 GIRHVGEKASRLLLETFGDIETVMQS----------DEEAIAQIDGLGHVIANSIAQYFA 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 P + L + + S+ + +V TG L+++ R +A+ + LGA Sbjct: 552 KPEAQQLISELKSQGLNLSYLGQRVDQSAPLYGLTVVLTGKLEEMGRSEAKTKLENLGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V++ +S+KTD+++ G + GSKL+KA+QLG++I +E+ L L Sbjct: 612 VTSSVSKKTDVVLAGSDSGSKLDKAKQLGIRIEDEQWLLDL 652 >gi|148986045|ref|ZP_01819066.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP3-BS71] gi|147921879|gb|EDK73005.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP3-BS71] gi|301800082|emb|CBW32679.1| DNA ligase [Streptococcus pneumoniae OXC141] Length = 652 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 213/700 (30%), Positives = 354/700 (50%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K ++ L ++ + YY P + DSEYD L R + A+P+ + + P +++ Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 60 GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YEKG V RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q + L Sbjct: 173 DQVNQVRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN A I ++ E+ R LPYDIDG+V KV++ + Q++LG Sbjct: 232 KYLEQLGFVVNPKRILAENIDKIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCN 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S ++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A ++ ADI+ LQ + G + S LY +I + S E+ +F LG Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG++ ++ L +Y+ S +N Q D + + +G +IA+++ ++ Sbjct: 503 IRHVGSKASQLLLQYFHSIENLYQA----------DSEEVASIESLGGVIAKSLQTYFAT 552 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + + L + + + + +V TG L++++R +A+ + LGA V Sbjct: 553 EGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KTD+++VG + GSKL+KAQ+LG+++ +E L Sbjct: 613 TGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652 >gi|325690880|gb|EGD32881.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK115] Length = 652 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 219/701 (31%), Positives = 357/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ +S L + ++ + YY +P + DSEYD L R + +P P+ P ++ Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ K H P SL+ ++ E+L F R+ + + + + E KIDG Sbjct: 59 VGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRVRK-----EFPQVSYLCELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YEKG V A RGDG GE+++ ++ + IP L + I VRGE Y+ K Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N G +ANPRNAA+G LR+L+ + N + S A Q E+ Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQADSQEEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L K+ LGF VN A++ + + ++ R +L Y+IDG+V KV++ ++Q++LG Sbjct: 231 LNKLADLGFSVNPTHILADSIEAVWKFIEKIAQERDSLAYEIDGIVIKVNDLAVQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR D V+V +AG++IP V+ ++ ++R + PS CP C Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEPL-EIPSHCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 ++ A I+ L + + F + S LY +I + S ER +F L Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELGNFKEKSANKLYTAIQASKENSAERLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ +R L + + +Q + + +G +IAQ++ +++ Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + L + + + + +V TG LQK+ R++A+E + LGA Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 VS +S+KTD+++ G + GSKL KAQ+LG++I +E+ L Sbjct: 612 VSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDEDWLDSL 652 >gi|113954059|ref|YP_731994.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CC9311] gi|122945488|sp|Q0I6C8|DNLJ_SYNS3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|113881410|gb|ABI46368.1| DNA ligase, NAD-dependent [Synechococcus sp. CC9311] Length = 697 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 211/717 (29%), Positives = 351/717 (48%), Gaps = 55/717 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L + ++ YY P + D YD L R + H L + P ++ Sbjct: 15 ERAEELRRLLNRAAHAYYVLDAPDMEDPVYDQLYRELQDLEHQDSTLV---SADSPTQRV 71 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-----DNSIFFTLEPK 133 GG + V+H I SL+ +N ++L + +R+ + + ++ E K Sbjct: 72 GGRLADGFRSVSHRISLFSLDNAFNRDELHGWYSRLLKALDRTPAAGSPPPTLPMVGELK 131 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVY 192 IDG + + YE G V AA RGDG GE+++A +R I +IP L +P +EVRGE + Sbjct: 132 IDGNALALSYENGVLVRAATRGDGEQGEEITANVRTISSIPLRLHLEPVPAWVEVRGEAF 191 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF- 250 I F A+N+E ++ +ANPRNA +G LR+L+P+ R L+FF + L E Sbjct: 192 IPDATFHAINNERLSRDESLFANPRNACAGTLRQLDPSVVAARRLDFFAYTLHLPDEWQE 251 Query: 251 --AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ LQ + GF VN + +++ + R L Y DG+V K+++ Sbjct: 252 RRPLTQWDALQWLGDAGFKVNPNAGLLPDLQAVEQFFDTWDTERRQLDYATDGVVVKLND 311 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 LQ G ++PRW I+ K+ ++A +++L I Q+GRTG++TPVA EPV + G + Sbjct: 312 LRLQDAAGFTQKAPRWAIALKYPAEEAPSKILRISYQVGRTGVITPVAEFEPVGLAGTSV 371 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN D + L D+ GD ++V++AGE+IP+VV ++ R AQP Sbjct: 372 SRASLHNADRLVEL-----------DLHDGDTIVVRKAGEIIPEVVRVLPELRPALAQPL 420 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 CP C S +VR+ N +A RC +C A L+H+VS+ A +I+GLG Sbjct: 421 EITKTCPACGSTLVRESNE------SATRCINS-SCPAILRGALRHWVSKGAMDIDGLGS 473 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ ++ AD++ L + ++ G S NL ++N R+ Sbjct: 474 KLIEQLVDR----GLVQSIADLYRL------DMALLGSLERMGSKSAENLIQALNASRSQ 523 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + ++ LGI HVG A+++ + + + Q S+ + VG I Sbjct: 524 GWAKQLYGLGIHHVGDVNAKAITTAFPNADSLNQA-------ACHAPESITAIFGVGKEI 576 Query: 609 AQAIVEFYQNPRNICAVEALLKEV-SPSIGRHEKN------VSSEIENKKLVFTGTLQKI 661 AQ++ +++ +P N ++ L S S+ E++ + + V TGTL + Sbjct: 577 AQSLQQWFSSPANQRLLDELRSLGFSLSLNEEEQSRATTAAANHHLTGSTFVLTGTLPTL 636 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+E + G VS +S+KT ++ G+ GSKL KAQ+LGV I++EE +L Sbjct: 637 TRSQAKEQIEACGGKVSGSVSKKTSYLVAGEEAGSKLTKAQELGVSILDEEALQNML 693 >gi|169834268|ref|YP_001694538.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae Hungary19A-6] gi|254781426|sp|B1IBQ3|DNLJ_STRPI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|168996770|gb|ACA37382.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae Hungary19A-6] Length = 652 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 213/700 (30%), Positives = 354/700 (50%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K ++ L ++ + YY P + DSEYD L R + A+P+ + + P +++ Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 60 GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YEKG V RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q + L Sbjct: 173 DQVNQVRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN A I ++ E+ R LPYDIDG+V KV++ Q++LG Sbjct: 232 KYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLVSQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCN 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S ++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A ++ ADI+ LQ + G + S LY +I + S E+ +F LG Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG++ ++ L +Y+ S +N +Q D + + +G +IA+++ ++ Sbjct: 503 IRHVGSKASQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFAA 552 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + + L + + + + +V TG L++++R +A+ + LGA V Sbjct: 553 EGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KTD+++VG + GSKL+KAQ+LG+++ +E L Sbjct: 613 TGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652 >gi|322387936|ref|ZP_08061543.1| NAD-dependent DNA ligase LigA [Streptococcus infantis ATCC 700779] gi|321141209|gb|EFX36707.1| NAD-dependent DNA ligase LigA [Streptococcus infantis ATCC 700779] Length = 652 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 214/700 (30%), Positives = 360/700 (51%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L + ++ + YY P + DSEYD L R + A+P+ P+ P +++ Sbjct: 3 ERMKELVELLNRYATEYYTSDNPSVSDSEYDRLYRELVELEIAYPEQVL---PDSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + + + E KIDG Sbjct: 60 GGKILDGFKKYSHQYPLYSLQDAFSREELDAFDARVRKEL-----DDVTYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YE+G F A RGDG GE+++ ++ + IP LS I I VRGE Y+ ++ F Sbjct: 115 ISLTYEQGIFAAGATRGDGSVGENITENLKRVKDIPLSLSEKI--DITVRGECYMPRDSF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q ++L Sbjct: 173 NQVNLARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKVL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + LGF VN A++ + + E+ R LPYDIDG+V KV++ + Q+QLG Sbjct: 232 NHLEQLGFVVNPRRLLAHSMDEVWEFIQEVGQERDQLPYDIDGVVIKVNDLTGQEQLGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAKLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C+ Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-GIPTNCPSCE 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S+++ + A RC C AQ E L HF SRDA NI GLG ++ F Sbjct: 400 SKLLHFEDE------VALRCINPQ-CPAQIKEGLIHFASRDAMNISGLGPSIVEKLF--- 449 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A ++ ADI+ L + G + S LY +I + S E+ +F LG Sbjct: 450 -AANLVKDVADIYRLTVEDF------LVLDGIKEKSAQKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG++ ++ L +++ S ++ AQ + + + +G++IAQ++ +++ Sbjct: 503 IRHVGSKASQLLLQHFHSIESLAQA----------NPEEVASIESLGNVIAQSLQSYFET 552 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + L + + V + + +V TG L+++ R +A+ + LGA V Sbjct: 553 EGAKILLSELKELGVNLDYKGQVVAVDAALSGLTVVLTGKLERLTRSEAKSKLENLGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KTD+++ G GSKL+KAQ+LG++I +E L Sbjct: 613 TGSVSKKTDLVVAGAEAGSKLQKAQELGIEIRDEAWLEGL 652 >gi|168486469|ref|ZP_02710977.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1087-00] gi|183570508|gb|EDT91036.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1087-00] Length = 652 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 213/700 (30%), Positives = 356/700 (50%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K ++ L ++ + YY P + DSEYD L R + A+P+ + + P +++ Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 60 GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YEKG V RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q + L Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN A I ++ E+ R LPYDIDG+V KV++ + Q++LG Sbjct: 232 KYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCN 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S ++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A ++ ADI+ LQ + G + S LY +I + S E+ +F LG Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG+++++ L +Y+ S +N +Q D + + +G +IA+++ ++ Sbjct: 503 IRHVGSKVSQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFAT 552 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + + L + + + + +V TG L++++R +A+ + LGA V Sbjct: 553 EGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KTD+++VG + GSKL+KAQ+LG+++ +E L Sbjct: 613 TGSISKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652 >gi|149012887|ref|ZP_01833800.1| DNA ligase [Streptococcus pneumoniae SP19-BS75] gi|182684133|ref|YP_001835880.1| DNA ligase [Streptococcus pneumoniae CGSP14] gi|254781428|sp|B2IPZ1|DNLJ_STRPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|147763176|gb|EDK70116.1| DNA ligase [Streptococcus pneumoniae SP19-BS75] gi|182629467|gb|ACB90415.1| DNA ligase [Streptococcus pneumoniae CGSP14] gi|301801994|emb|CBW34723.1| DNA ligase [Streptococcus pneumoniae INV200] Length = 652 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 213/700 (30%), Positives = 356/700 (50%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K ++ L ++ + YY P + DSEYD L R + A+P+ + + P +++ Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 60 GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YEKG V RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q + L Sbjct: 173 DQVNQVRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN A I ++ E+ R LPYDIDG+V KV++ + Q++LG Sbjct: 232 KYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCN 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S ++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A ++ ADI+ LQ + G + S LY +I + S E+ +F LG Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG+++++ L +Y+ S +N +Q D + + +G +IA+++ ++ Sbjct: 503 IRHVGSKVSQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFAT 552 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + + L + + + + +V TG L++++R +A+ + LGA V Sbjct: 553 EGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KTD+++VG + GSKL+KAQ+LG+++ +E L Sbjct: 613 TGSISKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652 >gi|125718295|ref|YP_001035428.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK36] gi|166216249|sp|A3CNX3|DNLJ_STRSV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|125498212|gb|ABN44878.1| DNA ligase, putative [Streptococcus sanguinis SK36] Length = 652 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 217/701 (30%), Positives = 356/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ +S L + ++ + YY +P + DSEYD L R + +P P+ P ++ Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ K H P SL+ ++ E+L F R+ + + + + E KIDG Sbjct: 59 VGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRVRK-----EFPQVSYLCELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G V A RGDG GE+++ ++ + IP L + I VRGE Y+ K Sbjct: 114 SISLTYENGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N G +ANPRNAA+G LR+L+ + N + S Q E+ Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQVGSQEEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L K+ L F VN A++ + + ++ R +LPY+IDG+V KV++ ++Q++LG Sbjct: 231 LNKLADLDFSVNPTHILADSIESVWEFIEKIAEERDSLPYEIDGIVIKVNDLAVQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR D V+V +AG++IP V+ ++ ++R + PS CP C Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEAL-EVPSHCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 ++ A I+ L + + + F + S LY +I + S ER +F L Sbjct: 452 N----LVKDVAGIYRL------TIENLLELENFKEKSANKLYTAIQASKKNSAERLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ +R L + + +Q + + +G +IAQ++ +++ Sbjct: 502 GIRHVGSKASRILLEKFHDIPRLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + L + + + + +V TG LQK+ R++A+E + LGA Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 VS +S+KTD+++ G + GSKL KAQ+LG++I +E+ L Sbjct: 612 VSGSVSKKTDLVVAGADAGSKLAKAQELGIEIRDEDWLDSL 652 >gi|99081239|ref|YP_613393.1| DNA ligase, NAD-dependent [Ruegeria sp. TM1040] gi|122984289|sp|Q1GGT5|DNLJ_SILST RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|99037519|gb|ABF64131.1| DNA ligase NAD-dependent [Ruegeria sp. TM1040] Length = 739 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 292/753 (38%), Positives = 427/753 (56%), Gaps = 59/753 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + AR E +L+ +I D Y+Q P + D++YD LKRR A+A AFP LA+ Sbjct: 1 MDEADARAEFEALQTKIEKADHDYHQKDAPTLSDADYDRLKRRYLALADAFPILAKDGTR 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + +G KVTH+ +SL + +D+ F + R+ + + FT E Sbjct: 61 ---VASVGAPAASGFGKVTHAQRMMSLGNAFEDQDVEDFAVGLRRYLGLSSEAPLAFTAE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG +++RYE GK V AA RGDG GE+V+ R I IP+ +S PE++EVRGEV Sbjct: 118 PKIDGLSLSLRYEAGKLVQAATRGDGAVGENVTENARTISDIPQEISGA-PEVLEVRGEV 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+S DF ALN G K +ANPRNAA+G LR+L+ R L FF + G+ SE Sbjct: 177 YMSHADFEALNARHAETGGKIFANPRNAAAGSLRQLDAEITRARPLRFFAYSWGELSEPL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A+ Q + ++++ LGF N R ++++Y+ ++ R+ L YDIDG+VYKV++ S Sbjct: 237 AETQIDAIERLASLGFQTNPLTRCCEQISELLAHYHAIEEQRADLGYDIDGVVYKVNDLS 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG R+ +PRW I+HKF + A T L IDIQ+GRTG L+PVARL PV +GG +++N Sbjct: 297 LQERLGFRSTTPRWAIAHKFPAELAWTHLEGIDIQVGRTGALSPVARLHPVTVGGVVVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNEDYI GLD+ G +RGG+DIRVGD V + RAG+VIPKV D+ ++ R + ++F Sbjct: 357 ATLHNEDYIAGLDSKGAPIRGGKDIRVGDWVQIYRAGDVIPKVADVDLSRRPEGTERYAF 416 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S VR+ A RC+GGL C AQ +E+LKHFVSR AF+IEGLG +Q Sbjct: 417 PTRCPRCDSPAVREEG------DAVRRCSGGLICPAQAVEKLKHFVSRAAFDIEGLGAKQ 470 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F ++ PADIF LQ+R + +++N G+G+ S + L+ +I +R I Sbjct: 471 VEQFHSD----GWVKEPADIFELQQRYGSGLQQLKNREGWGEKSASALFAAIEDKRRIEF 526 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQ-------------------------------- 578 R IF LGIRHVG A+ LA ++ ++ Sbjct: 527 ARLIFGLGIRHVGEVAAKDLALHFRTWSALAEAADLARAAALAHRAADEAEIVERQEAQA 586 Query: 579 -----NFAQEINNIIA------HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 ++ N +A + W LI V +G +A ++ + + NP A + Sbjct: 587 SARRAKISEARNAAVATCAVAPDSQAAWDDLISVDGLGPTVALSLSDAFANPEERAAFDR 646 Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 L+ + I S + K +VFTGTL+K+ R +A+ LGA VS +S+KTDI Sbjct: 647 LIAHLEI-IEPDAPADDSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVSGSVSKKTDI 705 Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ G GSK KA +LG++ ++E+ +L L+ Q Sbjct: 706 LVAGPGAGSKAAKAAELGIQTLDEDGWLDLIGQ 738 >gi|323351288|ref|ZP_08086944.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis VMC66] gi|322122512|gb|EFX94223.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis VMC66] Length = 652 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 215/701 (30%), Positives = 354/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ +S L + ++ + YY +P + DSEYD L R + +P P+ P ++ Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ K H P SL+ ++ E+L F R+ + + + + E KIDG Sbjct: 59 VGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRVRK-----EFPQVSYLCELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G V A RGDG GE+++ ++ + IP L + I VRGE Y+ K Sbjct: 114 SISLTYENGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N G +ANPRNAA+G LR+L+ + N + S A Q + Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQADSQEAV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L K+ L F VN A++ + + ++ R +L Y+IDG+V KV++ ++Q++LG Sbjct: 231 LNKLADLDFSVNPTHILADSIDSVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR D V+V +AG++IP V+ ++ ++R + PS CP C Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEPL-EIPSHCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNINGLGPAVVEKLFAQ 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 ++ A I+ L + + F + S LY +I + S ER +F L Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYTAIQASKENSAERLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ +R L + + +Q + + +G +IAQ++ +++ Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + L + + + + +V TG LQK+ R++A+E + LGA Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 VS +S+KT++++ G + GSKL KAQ+LG++I +E+ L Sbjct: 612 VSGSVSKKTNLVVAGADAGSKLAKAQELGIEIRDEDWLDSL 652 >gi|282851211|ref|ZP_06260576.1| DNA ligase (NAD(+)) [Lactobacillus gasseri 224-1] gi|282557179|gb|EFB62776.1| DNA ligase (NAD(+)) [Lactobacillus gasseri 224-1] Length = 668 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 209/715 (29%), Positives = 362/715 (50%), Gaps = 50/715 (6%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + L+ QA +++ L +++ + YY P++ D+ YD + + FPDL S Sbjct: 1 MAVLTHNQASQKVDELRKKLDEWAEDYYAKDAPVVEDAVYDKAYQELVELEKQFPDLVTS 60 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + ++GGE+ L KV H +P LS+ +++ ++L++F RI + + + + Sbjct: 61 ---DSITQRVGGEIKSDLSKVEHPVPMLSMGDVFSKDELKEFDERITKLVG----HPVAY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ Y GK A+ RG+G GEDV+A + I IP+ L + EVR Sbjct: 114 NVELKIDGLSLSLEYTAGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPEPL--TTEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+ K F LN E G + +ANPRNAA+G LR+L+ + Sbjct: 172 GECYMEKEAFAKLNAERDEKGEQVFANPRNAAAGSLRQLDARITKKRNLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ + +M L F N ++ + + + +E + R+ L Y IDG+V KVD+ Sbjct: 232 KNITSQHQAIDEMNRLDFHTNQTGQRLESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 SLQ +LG + PRW I++KF ++ T + +I+ +GRTG++TP A ++PV + G ++ Sbjct: 292 LSLQNELGNTVKVPRWEIAYKFPPEEQETVVKEIEWTVGRTGVVTPTAVMDPVQLAGTVV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN DY++ + +R+GD V + +AG++IP++ +++N+R D++P+ Sbjct: 352 SRASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLNKRPKDSEPY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C +V + A RC + C AQ E + HF SR A NI GLG Sbjct: 401 QIPNKCPSCGQDLVHLQDE------VALRCINPM-CPAQVEEGIIHFASRGAMNIMGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + AD++ L Q + + F D S+TNL SI + Sbjct: 454 RIVKQLIDKN----FVNDVADLYHLTNEQLS------QLDHFKDKSITNLLTSIENSKQN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S E +F LGI HVGA+ AR + + Y + + +Q L + +G+ I Sbjct: 504 SAELLLFGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIGETI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A+++ ++ P ++ L E+ + + K +V TG L R + Sbjct: 554 AESLTAYFNQPSAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKLSDFTRSE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + LGA V+ +S+KTD +I G + GSK +KA++L V ++ E++ + +++ Sbjct: 614 FTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKIEK 668 >gi|122971128|sp|Q14L37|DNLJ_SPICI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110005471|emb|CAK99793.1| dna ligase protein [Spiroplasma citri] Length = 667 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 233/713 (32%), Positives = 377/713 (52%), Gaps = 48/713 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ EQA+K L++++ + YY P + D EYD + AI + +L Sbjct: 1 MTFEQAKKRSLVLKEQLEKWNYEYYVNDNPSVSDQEYDRALQELIAIEQQYSELITI--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++ G+++ K H+ P LSL +N +DL F +I F I +T E Sbjct: 58 DSPTQRVSGQISEKFNKYVHTSPMLSLGNAFNYDDLIHFDEQIKEFTAL---PEIEYTCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++ Y+ V A RGDG +GEDV+ I+ I +IP + + VRGEV Sbjct: 115 LKIDGLSISLVYDNHVLVMGATRGDGLTGEDVTINIKQIKSIPLRIDQP---TLIVRGEV 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 Y+S +F +N+E + G +ANPRNAA+G LR+L+ T R LN F++ + Sbjct: 172 YLSVEEFNKINEERVKNGEFKFANPRNAAAGTLRQLDSTIVAKRKLNAFLYYYVNALQDG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + QYE LQ++ L F +N R + + +Y E + R+ L Y+IDG+V KV+ + Sbjct: 232 IQSQYEALQRLEQLKFKINPEYRYCSNIAAVWAYIQEYEPKRNQLGYEIDGIVIKVNNLN 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 L ++G A++P+W I++KF + T+LL+I +GRTG +T A LEP+ I G ++ Sbjct: 292 LYNRIGYTAKNPKWAIAYKFPAEVVVTKLLNIFPSVGRTGRITYNAVLEPIRIVGTIVRA 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D+I RDIR+GD V VK+AG++IP+V++ + R +AQ + Sbjct: 352 ATLHNADFI-----------TERDIRIGDNVQVKKAGDIIPEVINYVAARRQKNAQKWQE 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 + CP C S + R C + C + L+H+ SR+A NIEG+ ++ Sbjct: 401 ATHCPECNSLLERVEGE------VDQYCINSV-CPKKITRGLEHYCSRNAMNIEGISEKI 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ FK E ++ +D++ L++ + +I + FG+ S N+ SIN +N SL Sbjct: 454 IERLFKLE----YLKSFSDLYQLEQYRA----EIIELENFGEKSFENMITSINNSKNNSL 505 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F+LGIRHVG + A+ LA+ + + N A + L + +G I+A Sbjct: 506 ERLLFALGIRHVGQKTAKLLARQFKTIDNLAA----------MNIEQLSIINDIGPIVAA 555 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++V+++ P N + L + ++++ + EN + V TG L K R +E Sbjct: 556 SVVDYFAIPANQQELALLRQNGVKMEYFATNQHLAQKFENYRFVITGVLSK-SREYFKEL 614 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + G VS +S KT ++ G + G+KL KAQ+L VKI+NEE+F LL + + Sbjct: 615 IESYGGQVSESVSAKTTYLLAGTDAGNKLVKAQKLNVKIINEEEFQQLLSKED 667 >gi|239928777|ref|ZP_04685730.1| NAD-dependent DNA ligase LigA [Streptomyces ghanaensis ATCC 14672] gi|291437098|ref|ZP_06576488.1| NAD-dependent DNA ligase LigA [Streptomyces ghanaensis ATCC 14672] gi|291339993|gb|EFE66949.1| NAD-dependent DNA ligase LigA [Streptomyces ghanaensis ATCC 14672] Length = 731 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 217/737 (29%), Positives = 346/737 (46%), Gaps = 62/737 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +AR++ L ++I H YY P+I D+E+D R + + P+ Sbjct: 13 PAEAREQHVQLAEQIEEHRFRYYVNDAPVISDAEFD---RLLRELEALEEEYPELRTPDS 69 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+ G V H LSL+ +N +DL + R+ R + F E K Sbjct: 70 PTQKVAGSYETEFTAVRHRSRMLSLDNTFNDDDLAAWTERVRRELGE---QEYHFLCELK 126 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG + + YE+G+ AA RGDG +GED++ +R I +P L + P+++E+RGEVY Sbjct: 127 VDGLAVNLTYERGRLTRAATRGDGRTGEDITPNVRTIAEVPDRLKGDRVPDLVEIRGEVY 186 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 F LN ++ G KP+ANPRNAA+G LR+ +P TR L+ VHG+G Sbjct: 187 FPMEKFEELNRRLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHLVVHGIGALEGFEG 246 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E ++ G P + R + G+ + R ++ ++IDG+V K+DE Sbjct: 247 MTRLSEAYDLLKSWGLPTSRHNRVVDDLGGVREFIAHYGENRHSVEHEIDGVVVKLDEIR 306 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG AR+PRW I++K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ + Sbjct: 307 LQGRLGSTARAPRWAIAYKYAPEEVNTKLVDIRVGVGRTGRVTPYAQVEPVTVAGSEVEF 366 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN+D +K + + +GD V++++AG+VIP+++ + + R + F Sbjct: 367 ATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVM 415 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG--- 487 P CP C + + + RC AC AQ ERL + R A +IE G Sbjct: 416 PGECPECGTPLRPM-----KEGDVDLRCPNARACPAQLRERLFYLAGRKALDIEHFGYVA 470 Query: 488 ---------------KQQLDFFFKSEDPAFSIRIP--ADIFTLQRRQQTSTTK-----IE 525 K + D F + D I+ L +R + + Sbjct: 471 AAALTKPLEPADPPLKDEGDLFDLTVDQLLPIKAYVLDQDSGLPKRDPKTGEEKIATVFA 530 Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 N G + + ++I + L R + L IRHVG A +LA+ + S + Sbjct: 531 NQEGKAKKNALAMLENIAAAKERPLARLLTGLSIRHVGPVAAEALARAFRSIDRIEEASE 590 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNV 643 L VG+I+A A+ +++ + + E Sbjct: 591 ----------EELKNTEGVGEIVAAAVKQWFAEEWHREIIRKWKAAGVRMEDEGSGEDEG 640 Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 +E +V TGTL+ R A+E + GA V+ +S+KT ++VGDNPGSK +KA Q Sbjct: 641 PRPLEGLTVVVTGTLEHFTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQ 700 Query: 704 LGVKIMNEEQFLFLLQQ 720 L V ++NEE LL Q Sbjct: 701 LKVPVLNEEGLNVLLGQ 717 >gi|329121050|ref|ZP_08249681.1| NAD-dependent DNA ligase LigA [Dialister micraerophilus DSM 19965] gi|327471212|gb|EGF16666.1| NAD-dependent DNA ligase LigA [Dialister micraerophilus DSM 19965] Length = 666 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 226/709 (31%), Positives = 369/709 (52%), Gaps = 46/709 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + ++ L +E+ YH YY KP I D E+D + R +P+L Sbjct: 1 MITNEIISKVKKLREELRYHSYLYYVLDKPEISDFEFDKMYRELVDFESKYPELITQ--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG+ KV P LSL +N ++L +F + ++I + E Sbjct: 58 DSPTQRVGGKATGDFKKVEFKKPMLSLSNAFNGKELIEFDRSVKETLN---TDNIEYITE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG + + YE+GK + RGDG GEDV+A ++ I +IP + P I E+RGEV Sbjct: 115 LKIDGLSMNLIYEEGKLIRGLTRGDGKVGEDVTANVKTIKSIPLYIENAPPYI-EIRGEV 173 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 ++ ++ F++LN++ A G P+AN RNAASG +R+L+P +R L+FF + +G+T I Sbjct: 174 FMPRSSFVSLNEKRDAAGIMPFANCRNAASGSIRQLDPNVTASRNLDFFAYSVGETEGIE 233 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K Q +L ++ F VN ++ N+ ++ NE + R L YD DG+V KV++F Sbjct: 234 IKNQESLLNLLKKFHFKVNPNYKKINSIEKVIEIINEWQEKRHHLGYDTDGMVVKVNDFE 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q LG ++ P+W I++K+ ++A T + +I + +GRTG+LTP A L+ V I G ++ Sbjct: 294 QQNVLGATSKDPKWAIAYKYPPEEAETVVENIIVTMGRTGVLTPSADLKSVQIAGTVVKR 353 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN ++I+ +DIR+GD V + ++GE+IP++ ++ N+R + F Sbjct: 354 ATLHNMNFIE-----------EKDIRIGDIVKIYKSGEIIPEISVVLKNKRTGKEKKFIM 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C+ ++ R A+RC C E L HF SRDA NIEGLG Sbjct: 403 PSECPLCKHKIYRTEGE------VAYRCINP-DCGGVIRENLIHFASRDAMNIEGLGPAV 455 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D I AD + L++ I G+ S NL SI +N L Sbjct: 456 IDGLLAYN----LIENIADFYELRKDDII------QIERMGEKSAKNLLTSIENSKNRGL 505 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +F+F+LGIRH+G + + +++ + S+ V +G+I A+ Sbjct: 506 SKFLFALGIRHLGEKGSELISEKFKDIDVLMNA----------SVDSIKSVSGIGNITAE 555 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I ++++N +N +E L K+ + + +V TG L I R +A E + Sbjct: 556 HIYKYFKNEKNKKIIERLKNHGILMKLNERKSEGNAFKGHNVVLTGKLSNIGRREAGEII 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LG + + +++ T ++IVG+N GSKLEKA++ G+KI+NE FL ++ Sbjct: 616 KALGGNLQSTVTKTTTLVIVGENAGSKLEKAREKGIKIINENDFLKIIN 664 >gi|332366947|gb|EGJ44687.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1059] Length = 652 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 217/701 (30%), Positives = 355/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ +S L + ++ + YY +P + DSEYD L R + +P P+ P ++ Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ K H P SL+ ++ E+L F R+ + + + + E KIDG Sbjct: 59 VGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRVRK-----EFPQVSYLCELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YEKG V A RGDG GE+++ ++ + IP L + I VRGE Y+ K Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N G +ANPRNAA+G LR+L+ + N + S Q + Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQVGSQEAV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L K+ LGF VN A++ + + ++ R +L Y+IDG+V KV++ ++Q++LG Sbjct: 231 LNKLAALGFSVNPTHILADSIEAVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR D V+V +AG++IP V+ ++ ++R + PS CP C Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEPL-EIPSHCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 ++ A I+ L + + F + S LY +I + S ER +F L Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYTAIQASKENSAERLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ +R L + + +Q + + +G +IAQ++ +++ Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + L + + + + +V TG LQK+ R++A+E + LGA Sbjct: 552 QEGSHILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 VS +S+KTD+++ G + GSKL KAQ+LG++I +E+ L Sbjct: 612 VSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDEDWLDSL 652 >gi|313890529|ref|ZP_07824157.1| DNA ligase (NAD+) [Streptococcus pseudoporcinus SPIN 20026] gi|313121046|gb|EFR44157.1| DNA ligase (NAD+) [Streptococcus pseudoporcinus SPIN 20026] Length = 652 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 222/701 (31%), Positives = 368/701 (52%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 K + L ++ + YY P + D EYD L A+ +P+L + + P Sbjct: 2 EKRIIELTNLLNQYRQEYYTNDNPTVSDQEYDKLYHELLALETEYPELIQK---DSPTQG 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + ++ + E KIDG Sbjct: 59 VGGLILSGFEKYQHPYPLYSLQDAFSQEELFAFDRRVK-----LEFPTVTYVAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y++GK V A RG+G GE+++ I+ I IP+ L I I VRGE Y+SK+ Sbjct: 114 SISLDYKEGKLVTGATRGNGSVGENITENIKKIKDIPQTLKDPI--DITVRGEAYMSKHS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N E G +ANPRNAA+G LR+L+ + + N + S Q + Sbjct: 172 FQMINIERQESGEAEFANPRNAAAGTLRQLDTSIV-SKRNLASFLYQEASPSQEITQVAV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L K+ LGF VN +++ I + E++ R+ LPYDIDG+V KVD+ ++Q++LG Sbjct: 231 LDKLSHLGFSVNKHRMVSSSMEDIWQFIQEIEPDRAQLPYDIDGIVIKVDDLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D IGRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTIGRTGVVTPTANLRPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+ ++ ++R + +P P+ CP C Sbjct: 351 YI-----------AQKDIRIGDTVIVYKAGDIIPAVLRVVTDKR-KNQEPILIPNLCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 QS + + A RC L C + L+HF SR+A NI GLG ++ F++ Sbjct: 399 QSSLTHLEDE------VALRCINPL-CPSLIQRSLEHFASRNAMNIAGLGPAVVEKLFRA 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + I ADI+ L R Q S + G + S L +I + S E+ +F L Sbjct: 452 Q----LIHDVADIYKLSREQLLS------LEGIKEKSADKLLSAIADSKEKSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG + +R L + + + Q + IA ++ +G +IA ++ +++ Sbjct: 502 GIRHVGEKASRLLLETFGDIETLMQSNEDAIA----------QIDGLGHVIANSLAQYFA 551 Query: 618 NPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 P + L + ++ + + S+ + +V TG L+++ R +A+ + +LGA Sbjct: 552 KPEAQQLISELKCQGLNLTYLGQRVDQSAPLYGLTVVLTGKLEEMGRSEAKTKLEKLGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V++ +S+KTD+++ G + GSKL+KA+QLG+++ +E+ L L Sbjct: 612 VTSSVSKKTDVVLAGSDSGSKLDKARQLGIRVEDEQWLLDL 652 >gi|322411466|gb|EFY02374.1| NAD-dependent DNA ligase LigA [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 652 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 214/701 (30%), Positives = 353/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + + + ++ + YY P + DSEYD L R + + +P+ + P Sbjct: 2 KKRIREVTELLNRYRQEYYTNDSPSVSDSEYDKLYRELVELENQYPEHVLQ---DSPTQN 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 59 VGGTLLTGFDKYQHQYPLFSLQDAFSREELDAFDKRVK-----SEFPDATYLAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G+ A RGDG GE+++ ++ I IP L P I VRGE Y+S+ Sbjct: 114 SISLSYENGQLQVGATRGDGSIGENITENLKQIKDIP--QVLPQPLTITVRGEAYMSRQS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N+E G +ANPRNAA+G LR+L+ + + S Q + Sbjct: 172 FKAINEERQENGETEFANPRNAAAGTLRQLDTAVV-AKRQLATFLYQEASPTTRSQQDHV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+ + LGF VN +++ I ++ +++ R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LKALADLGFSVNQRYHLSSSMDEIWNFIQTVEAEREQLAYDIDGIVIKVNNLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L V + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTSVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V++ +AG++IP V+ +I ++R + PS CP C Sbjct: 351 YI-----------AEKDIRIGDTVIIYKAGDIIPAVLRVISDKRQEQVPMWI-PSQCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 QS +V + A RC L C + L+HF SR+A NI GLG ++ F Sbjct: 399 QSDLVHFEDE------VALRCINPL-CPSLIQRGLEHFASRNAMNIAGLGPAVVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + ADI+ L + ++ G + S L +I ++ S E+ +F L Sbjct: 450 --LAGLVHDVADIYKLTKEDL------LHLDGIKEKSAEKLLAAIETSKSNSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRH+GA+ +R + + + ++ + + +G +IA+++V+++Q Sbjct: 502 GIRHIGAKASRLILETCGNIEHLLTVRE----------EDIATIDGLGMVIAKSLVQYFQ 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 I VE L + + ++E+ +V TG L+K+ R+ A+ + LGA Sbjct: 552 QDSAILLVEELKNAGVNLAYLGQKIDSNAELFGLTVVLTGKLEKMTRNDAKAKLETLGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KT+++I G + GSKLEKAQ LG++I EE L Sbjct: 612 VTGSVSKKTNLVIAGSDAGSKLEKAQALGIRIEGEEWLEQL 652 >gi|312131728|ref|YP_003999068.1| DNA ligase, nad-dependent [Leadbetterella byssophila DSM 17132] gi|311908274|gb|ADQ18715.1| DNA ligase, NAD-dependent [Leadbetterella byssophila DSM 17132] Length = 680 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 211/717 (29%), Positives = 351/717 (48%), Gaps = 53/717 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + +L +I++++D YY + I D E+D L + + + A P+ P+ P Sbjct: 2 DIKTRIQTLTDQINHYNDRYYLDAVSEISDFEFDTLLKELEELEKAHPEF---RQPDSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + + V H P LSL ++ E++R + R+ + + + E K D Sbjct: 59 QRVGGSITRNFETVRHQFPMLSLSNTYSEEEIRDWDARVKKGL---EGEPYEYICELKFD 115 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIEVRGEVY 192 G ++IRYE G RGDG G+D++A ++ I ++P + E EVRGE + Sbjct: 116 GISLSIRYENGILTKGITRGDGVQGDDITANVKTIRSLPLNVRKFEEVLGENFEVRGEGF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + F ALN E G ANPRNAA+G + + + + + E Sbjct: 176 MPTKVFEALNKEKEIRGEALLANPRNAAAGTFKLQDSSVVASRKLDCFVYQFISGEERFT 235 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 E ++ GF V+N ++ + G++S+ +E R TL DG+V KV+ ++ + Sbjct: 236 THEESFLALQSAGFKVSNSWKKVSNIEGVMSFIHEWDEKRHTLECATDGIVIKVNSYAQR 295 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG A+SPRW I++K+ + ST LLD+ Q+GRTG +TPVA L PVN+ + AT Sbjct: 296 EKLGFTAKSPRWAIAYKYKAESKSTTLLDVTFQVGRTGTVTPVAELRPVNLSMTTVKRAT 355 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I+ L + +GD V V++AGE+IPKV + V P FP+ Sbjct: 356 LHNADEIERL-----------GLAIGDEVFVEKAGEIIPKVTGVAVQSLA--RIPIVFPT 402 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + ++R+ AA C C Q ++HF+ R A +IE LG+ ++D Sbjct: 403 ACPSCGTSLLRNEGE------AAWYCPNSEGCLPQIKGSIEHFIQRKALDIESLGEGKID 456 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL--------GFGDVSVTNLYDSINK 544 ++ IR AD++ L+ K+ F + +V N+ + I K Sbjct: 457 ILLEN----GLIRDAADLYQLKYEDLIGLEKVHVDEETGKSKKISFKEKTVKNILEGIAK 512 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + L + +F +GIR VG A+ LA ++ S Q ++ L+ VP V Sbjct: 513 SKEEPLAKLLFGIGIRFVGETTAQKLAAHFKSMQGLMNA----------NYEELLAVPDV 562 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQ 662 G+ +AQ+I +++Q+ + L HE+ + +E L++TGT + Sbjct: 563 GEKVAQSIRDYFQSESKQHFIAKLQVAGLQMEAVHEEVVTEGNALEGLSLLYTGTFENFS 622 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 R + + + G + + +S+K +IVG+ G SKL+KA++LG+ I+NEEQFL L Sbjct: 623 REELERKIEANGGKLVSGVSKKLSYLIVGEGAGPSKLKKAEELGIPILNEEQFLAKL 679 >gi|302558233|ref|ZP_07310575.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000] gi|302475851|gb|EFL38944.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000] Length = 731 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 218/737 (29%), Positives = 351/737 (47%), Gaps = 62/737 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +AR++ + L + I H YY P+I D+++D R + + P+ Sbjct: 13 PAEAREKHAKLAERIEEHRFRYYVNDAPVISDADFD---RLLRELEALEEEHPELRTPDS 69 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+ G V H LSL+ +N +DL ++ RI+R F E K Sbjct: 70 PTQKVAGAYETEFTSVEHRSRMLSLDNTFNDDDLAAWVERIHRELG---TQKYHFLCELK 126 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG + + YE+G+ V AA RGDG +GED++ +R I IP L+ + P+++E+RGEVY Sbjct: 127 VDGLAVNLTYERGRLVRAATRGDGRTGEDITPNVRTIAEIPDRLTGDEVPDVVEIRGEVY 186 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 F LN ++ G KP+ANPRNAA+G LR+ +P TR L+ VHG+G Sbjct: 187 FPMEKFQELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGVLEGYRG 246 Query: 252 KGQYEM-LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + +R G P + R + G+ + R ++ ++IDG+V K+DE Sbjct: 247 MTRLSQGYELLRTWGLPTSPHNRVVDDLEGVREFIAYYGENRHSVAHEIDGVVVKLDEIP 306 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +R+PRW I++K+A ++ +TRL++I + +GRTG +TP A++EPV + G+ + Sbjct: 307 LQGRLGSTSRAPRWAIAYKYAPEEVNTRLVNIRVGVGRTGRVTPYAQVEPVTVAGSEVEF 366 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN+D +K + + +GD V++++AG+VIP+++ + + R + F Sbjct: 367 ATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVM 415 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG--- 487 P+ CP C + + + RC C AQ ERL + R A +IE G Sbjct: 416 PAECPECGTPLRPM-----KEGDVDLRCPNARTCPAQLRERLFYLAGRKALDIEHFGYVA 470 Query: 488 ---------------KQQLDFFFKSEDPAFSIRIP--ADIFTLQRRQQTSTTK-----IE 525 + + D F + D I+ L +R + + Sbjct: 471 AAALTRPLEPEEPPLRDEGDLFDLTVDQLLPIKAYVLDQDSGLPKRDPKTGEEKIATVFA 530 Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 N G + + +I + L R + SL IRHVG A +LA+ + S Q Sbjct: 531 NQEGEPRKNAVAMLANIAAAKERPLARVLTSLSIRHVGPVAAEALAREFRSIDRIEQATE 590 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNV 643 L VG IIA ++ +++ + + E Sbjct: 591 ----------EELAATEGVGGIIAASLKQWFAEDWHREIIRKWKTAGVRMEDERSGEDEG 640 Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 +E +V TGTL+ R A+E + GA V+ +S+KT ++VGDNPGSK +KA Q Sbjct: 641 PRPLEGLTVVVTGTLENFTRDGAKEALQSQGAKVTGSVSKKTAFVVVGDNPGSKYDKAMQ 700 Query: 704 LGVKIMNEEQFLFLLQQ 720 L V ++NE+ F LL+Q Sbjct: 701 LKVPVLNEDGFNVLLEQ 717 >gi|15900984|ref|NP_345588.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae TIGR4] gi|81531953|sp|Q97QT2|DNLJ_STRPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|14972593|gb|AAK75228.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae TIGR4] Length = 652 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 213/700 (30%), Positives = 356/700 (50%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K ++ L ++ + YY P + DSEYD L R + A+P+ + + P +++ Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 60 GGKVLDGFEKYSHQYPLYSLQDAFSCEELDAFDARVRKEVAHP-----TYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YEKG V RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q + L Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN A I ++ E+ R LPYDIDG+V KV++ + Q++LG Sbjct: 232 KYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCN 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S ++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A ++ ADI+ LQ + G + S LY +I + S E+ +F LG Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG+++++ L +Y+ S +N +Q D + + +G +IA+++ ++ Sbjct: 503 IRHVGSKVSQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFAT 552 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + + L + + + + +V TG L++++R +A+ + LGA V Sbjct: 553 EGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KTD+++VG + GSKL+KAQ+LG+++ +E L Sbjct: 613 TGSISKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652 >gi|296532809|ref|ZP_06895486.1| NAD-dependent DNA ligase LigA [Roseomonas cervicalis ATCC 49957] gi|296266870|gb|EFH12818.1| NAD-dependent DNA ligase LigA [Roseomonas cervicalis ATCC 49957] Length = 719 Score = 495 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 271/706 (38%), Positives = 388/706 (54%), Gaps = 44/706 (6%) Query: 32 DDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTH 91 D Y+Q P+I D+EYDAL+RR AI FP L R++ P+ K H Sbjct: 33 DLAYHQQDAPVITDAEYDALRRRNAAIEARFPALKRADSPSDASPG--AAPAAGFAKARH 90 Query: 92 SIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151 P LSL+ + ED +F I RF + + + F EPKIDG + + YE G FV Sbjct: 91 GTPMLSLDNAFAPEDFLEFTKSIRRFLRLDEAELLRFVAEPKIDGLSVNLTYENGVFVRG 150 Query: 152 ALRGDGHSGEDVSACIRAI--PTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209 A RGDG GED++ + +PR L+ PE IE+RGEV+++K DF+A DE + Sbjct: 151 ATRGDGTEGEDITRNLETFSDKNLPRRLAAPFPEQIEIRGEVFMTKADFIAFRDEQARLA 210 Query: 210 R----------------KPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + ANPRNAA+G LR+L+P R L F + G++S A+ Sbjct: 211 EEREQRRERGEKVGPEIRIPANPRNAAAGSLRQLDPEITRQRPLRLFAYAQGESSAPVAE 270 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 L ++ GF VN R H ++ EM + R+ L YDIDG+VYK+D Q Sbjct: 271 THSGYLARLAEWGFDVNPLSRALPDEHAAEAFQAEMAAQRAGLAYDIDGVVYKLDRLDWQ 330 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG R+PRW I+ KF +QA TRLLDI IQ+GRTG LTP A ++PVN+GG ++ +AT Sbjct: 331 ARLGFVGRAPRWAIAWKFPAEQAMTRLLDIQIQVGRTGALTPRAVMQPVNVGGVMVQHAT 390 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I +D+R+GD V+++RAG+VIP++V I+ +R +A PF+FP+ Sbjct: 391 LHNEDEIAR-----------KDVRIGDTVILQRAGDVIPQIVGIVPEKRPAEAVPFAFPT 439 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S VR RCTGGL C AQ +ERLKHFV R A +IEGLG++ + Sbjct: 440 TCPACGSHAVRPEGE------VVRRCTGGLICPAQTVERLKHFVGRTAMDIEGLGEENIL 493 Query: 493 FFFKSEDPAFSIRIPADIFTLQRR-QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + ++ PADIF L R ++ + V NL +I RRN LE Sbjct: 494 RLHEE----GLVKSPADIFRLHRHAERMRGWEGWGKGAKTSKKVDNLLAAIEARRNPPLE 549 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RFIF+LGIR +GA+ A+ LA++Y S + ++ ++ L + VG IA Sbjct: 550 RFIFALGIRRIGAQNAKLLARHYHSLAEWRAKMLAATIIGSEAREELGSIQGVGPAIATE 609 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 + EF+ RN A++ L +EV+P ++ S K +VFTGTL++ R +A+ Sbjct: 610 LAEFFAEQRNRDALDDLAREVTPQDAERLES-DSPFAGKVVVFTGTLERSSRDEAEAVAD 668 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +LGA V+ +S+KTD ++VG + GSK +KA +LGV+ + E ++ L Sbjct: 669 RLGAKVTKSVSKKTDFVVVGADAGSKAKKAAELGVRTLTEPEWRAL 714 >gi|327470726|gb|EGF16182.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK330] Length = 652 Score = 495 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 219/701 (31%), Positives = 356/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ +S L + ++ + YY +P + DSEYD L R + +P P+ P ++ Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ K H P SL+ ++ E+L F RI + + + + E KIDG Sbjct: 59 VGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRIRK-----EFPQVSYLCELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YEKG V A RGDG GE+++ ++ + IP L + I VRGE Y+ K Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKTS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N G +ANPRNAA+G LR+L+ + N + S Q E+ Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQVGSQEEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L K+ L F VN A++ + + ++ R +LPY+IDG+V KV++ ++Q++LG Sbjct: 231 LNKLAALDFSVNPTHILADSIEAVWEFIEKIAQERDSLPYEIDGIVIKVNDLAVQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR D V+V +AG++IP V+ ++ ++R + PS CP C Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEPL-EVPSHCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 399 ESDLVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 ++ A I+ L + + F + S LY +I + S ER +F L Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYTAIQASKENSAERLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ +R L + + +Q + + +G +IAQ++ +++ Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + L + + + + +V TG LQK+ R++A+E + LGA Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 VS +S+KTD+++ G + GSKL KAQ+LG++I +E+ L Sbjct: 612 VSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDEDWLDSL 652 >gi|303327018|ref|ZP_07357460.1| DNA ligase, NAD-dependent [Desulfovibrio sp. 3_1_syn3] gi|302863006|gb|EFL85938.1| DNA ligase, NAD-dependent [Desulfovibrio sp. 3_1_syn3] Length = 711 Score = 495 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 254/741 (34%), Positives = 381/741 (51%), Gaps = 63/741 (8%) Query: 1 MKKRQLIPIEALSI------EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRR 54 M + P+E S+ Q R+ L E+ H+ Y+ P I D +YDAL R Sbjct: 1 MSPQNKPPVEQHSLLAPQPSAQERERARRLSAELERHNYLYHTLDAPEISDEQYDALFRE 60 Query: 55 CDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI 114 + +P L P+ P ++GG + L K H L+ +++ ED R F+ R+ Sbjct: 61 LTELEERWPGL---RSPHSPTLRVGGRLLDGLAKKAHRRRMYGLDNVFSDEDWRDFVERM 117 Query: 115 YRFWQKKDDNSIF--FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT 172 R W + + + F +PK+DG + I YE G + A RGDG GE V+ +R I T Sbjct: 118 QRAWDAELNGPLPLGFWCDPKLDGLALEIIYENGLLIEALTRGDGEIGEVVTEAVRTIRT 177 Query: 173 IPRVLSL--NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230 +P L P +EVRGEV + K DF ALN + A+GRK +ANPRNAA+G LR+L+ + Sbjct: 178 VPLRLRGEGPFPARLEVRGEVVMFKKDFEALNAQQEALGRKTFANPRNAAAGTLRQLDIS 237 Query: 231 DITRYL-NFFVHGLGKTSEIFAK---GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYN 286 F + LG+ AK Q+E++ ++ GF R + +Y Sbjct: 238 VTESRPLRFLAYSLGEADWAPAKPCLFQHELMARLTAYGFLTPPDGRLCAGADEVEAYAA 297 Query: 287 EMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQI 346 ++ R P +IDG V K D Q+ LG AR+PR+ ++ KF QA TRL IDIQ+ Sbjct: 298 WVREHRQDFPMEIDGAVAKEDNLEAQEALGFTARAPRFAVAFKFPAMQAETRLTGIDIQV 357 Query: 347 GRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRA 406 GRTG+LTPVA LEPV +GG +++ ATLHNED I+ RD+RVGD V+V+RA Sbjct: 358 GRTGVLTPVAVLEPVPVGGVMVSRATLHNEDEIR-----------ARDVRVGDTVIVQRA 406 Query: 407 GEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSA 466 G+VIP+VV +++ R PDA F FP CP C V R+ AA RC L+C A Sbjct: 407 GDVIPEVVGPVLSRRPPDAVEFVFPHTCPACGEAVHREPGE------AAWRCDN-LSCPA 459 Query: 467 QQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN 526 +L + HFVS+ +I+G+G++ + + ++ PAD+FTL+ + ++ Sbjct: 460 VRLRAISHFVSKAGLDIQGVGQKWIAQLV----TSGRVQSPADLFTLKAEELLDFERMGE 515 Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 +L V + R +L R I +LGIRHVG + AR LA ++ + + Sbjct: 516 VLARKFVDALD-----EARHTATLPRLISALGIRHVGEQTARLLAGHFRDLDDLGRA--- 567 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI--------GR 638 D +L +P VG +A +I FY++P N +E + + Sbjct: 568 -------DAETLQALPDVGPEVAASIRNFYESPANRAQLERFREMGLWPLSPLADANSAE 620 Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698 + ++ K ++FTGTL +QR KAQ GA+ + +++K D ++VGD PGSKL Sbjct: 621 TAQTQVGPLQGKNILFTGTLS-LQRGKAQHLAEAAGAIPAGSVNKKLDFLVVGDKPGSKL 679 Query: 699 EKAQQLGVKIMNEEQFLFLLQ 719 +KA+ LG+ +++E F LL Sbjct: 680 DKARTLGIAVLDEAGFRELLA 700 >gi|157150014|ref|YP_001450670.1| NAD-dependent DNA ligase LigA [Streptococcus gordonii str. Challis substr. CH1] gi|190359295|sp|A8AY10|DNLJ_STRGC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157074808|gb|ABV09491.1| DNA ligase, NAD-dependent [Streptococcus gordonii str. Challis substr. CH1] Length = 652 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 217/701 (30%), Positives = 355/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +S L ++ + YY P + DSEYD L R ++ +P+ P P ++ Sbjct: 2 KDRMSELVSLLNRYAHEYYTKDAPSVSDSEYDQLYRELVSLEEQYPNEIL---PESPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ K H P SL+ ++ +L F R+ + + + E KIDG Sbjct: 59 VGGKVLDGFEKYQHQYPLYSLQDAFSRAELVAFDERVRK-----EFPDASYLCELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G V A RGDG GE+++ ++ + IP L + I VRGE Y+ K Sbjct: 114 SISLAYENGILVAGATRGDGSIGENITENLKRVKDIPLTLPEPL--TITVRGECYMPKAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N G +ANPRNAA+G LR+L+ + + N + S Q ++ Sbjct: 172 FDAVNQLRQENGEAEFANPRNAAAGTLRQLDTSVV-AKRNLATFLYQEASPTSEATQEDV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+K+ LGF VN A+T + + ++ R LPY+IDG+V KV+ + Q++LG Sbjct: 231 LEKLSQLGFSVNEKRVLASTIDQVWDFIEKVGQERDKLPYEIDGIVIKVNHLAAQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI+ +DIR D V+V +AG++IP V+ ++ +R D PS CP C Sbjct: 351 YIR-----------EKDIRKDDTVIVYKAGDIIPAVLRVVEGKRVSDEHL-DVPSKCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 QS ++ + A RC L C AQ +E L HF SRDA NI GLG ++ F Sbjct: 399 QSDLLHFEDE------VALRCINPL-CPAQIMEGLAHFASRDAMNISGLGPAVVEKLFAK 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + +R A I+ L + F + S LY++I ++ S E+ +F L Sbjct: 452 D----LVRDVAGIYRLNIEDL------LQLENFKEKSANKLYNAIQASKSNSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ +R L + + + AQ + ++ + +G +IA+++ ++ Sbjct: 502 GIRHVGSKASRILLEKFHDIPSLAQA----------EQEEIVSIDSLGMVIAKSLHSYFA 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 ++ L + + + + K +V TG L+ + R +A+E + +LGA Sbjct: 552 QEGTQILLKELEEAGVNLAYLGEKAAADAVLSGKTVVLTGKLETLTRTQAKEKLLRLGAN 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTD++I G + GSKL KAQ+LG++I +E L Sbjct: 612 VAGSVSKKTDLVIAGADAGSKLAKAQELGIEIQDEAWLEQL 652 >gi|307067701|ref|YP_003876667.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Streptococcus pneumoniae AP200] gi|306409238|gb|ADM84665.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Streptococcus pneumoniae AP200] Length = 648 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 212/698 (30%), Positives = 353/698 (50%), Gaps = 51/698 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 ++ L ++ + YY P + DSEYD L R + A+P+ + + P +++GG Sbjct: 1 MNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRVGG 57 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 ++ K +H P SL+ ++ E+L F R+ + + E KIDG I+ Sbjct: 58 KVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLSIS 112 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + YEKG V RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 113 LTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASFDQ 170 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260 +N G +ANPRNAA+G LR+L+ + N + S Q + L+ Sbjct: 171 VNQVRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGLKY 229 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 + LGF VN A I ++ E+ R LPYDIDG+V KV++ + Q++LG + Sbjct: 230 LEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVK 289 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 +P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 290 APKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI- 348 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S Sbjct: 349 ----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCNSD 397 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 ++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 398 LLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----A 446 Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560 A ++ ADI+ LQ + G + S LY +I + S E+ +F LGIR Sbjct: 447 ANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIR 500 Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 HVG++ ++ L +Y+ S +N Q D + + +G +IA+++ ++ Sbjct: 501 HVGSKASQLLLQYFHSIENLYQA----------DSEEVASIESLGGVIAKSLQTYFATEG 550 Query: 621 NICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 + + L + + + + +V TG L++++R +A+ + LGA V+ Sbjct: 551 SEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTG 610 Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +S+KTD+++VG + GSKL+KAQ+LG+++ +E L Sbjct: 611 SVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 648 >gi|116334213|ref|YP_795740.1| NAD-dependent DNA ligase [Lactobacillus brevis ATCC 367] gi|122269104|sp|Q03Q13|DNLJ_LACBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116099560|gb|ABJ64709.1| NAD-dependent DNA ligase [Lactobacillus brevis ATCC 367] Length = 676 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 254/719 (35%), Positives = 387/719 (53%), Gaps = 51/719 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 PI+ L++EQA +E + L ++ YY+ P + D YD + R A+ AFP++ Sbjct: 5 PIKTLTVEQAAEEAADLRPQLLEWGKQYYEADAPSVEDDVYDRVYARLVALETAFPEIV- 63 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++GG L KVTH IP LSL ++++++L +F R + D Sbjct: 64 --TPDSPTQRVGGSSRSDLPKVTHDIPMLSLGDVFSLDELTEFDER----LRGNVDTPFD 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + E KIDG I++RYE GKFV + RG+G GED++A ++ I +IP +L+ P IEV Sbjct: 118 YNCELKIDGLAISLRYENGKFVQGSTRGNGQIGEDITANLKTIKSIP--QTLSRPLTIEV 175 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGE Y+ K FLALN+ A G+ P+ANPRNAA+G LR+L+ R L F++ + Sbjct: 176 RGECYMPKAAFLALNERREAAGQAPFANPRNAAAGSLRQLDTRVTADRQLATFMYNVADY 235 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + + Q +L ++ LGF N R A+ + +Y ++ R+ L Y IDG+V K Sbjct: 236 EPLTTRTQSGLLDELAELGFTTNATYRVAHDMADVAAYIETYQAQRTELAYGIDGIVIKA 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ LQ+ LG + PRW I++KF ++ TR+LDI+ IGRTG++TP A +EPV + G+ Sbjct: 296 NDLPLQRSLGATVKVPRWAIAYKFPPEEVQTRVLDIEWTIGRTGVVTPTAIMEPVALAGS 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + A+LHN DY+ +DIR+GD VL+ +AG++IP++ + +R +A+ Sbjct: 356 TVARASLHNPDYL-----------IAKDIRIGDTVLLHKAGDIIPEISQYVAAKRPAEAK 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + P+ CP C + +V + A RC C AQ E + HF SR+A NI GL Sbjct: 405 AYVIPTTCPSCGAELVHLDDE------VALRCINPR-CPAQLAEGMNHFASRNAMNIAGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G Q + F ++ AD++ L Q + + FG+ S NL +I+ R Sbjct: 458 GPQIVAQLFDRN----LVQDVADLYRLTTDQLLT------LDKFGEKSAQNLLTAIDNSR 507 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 N SLER +F LGIRHVGA+ ARSLA + + D + + VG Sbjct: 508 NNSLERLLFGLGIRHVGAKAARSLAAAFGDMASLMAA----------DSEQISAIDTVGG 557 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQR 663 IIA ++V ++ N + V L G N +SE K++V TG LQ++ R Sbjct: 558 IIADSVVTYFANTQVHELVAKLQAVGVNMTYTSGTPATNSTSEFTGKRVVLTGKLQELTR 617 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 +A E++ Q GA V+ +S+KTD++I G+ GSKL KAQ L V + NE Q + + Sbjct: 618 PQATEWLEQHGATVTGSVSKKTDLLIAGEAAGSKLAKAQSLDVPVWNEAQLQAAMDETK 676 >gi|94263030|ref|ZP_01286849.1| DNA ligase (NAD+) [delta proteobacterium MLMS-1] gi|93456573|gb|EAT06681.1| DNA ligase (NAD+) [delta proteobacterium MLMS-1] Length = 678 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 236/697 (33%), Positives = 371/697 (53%), Gaps = 44/697 (6%) Query: 26 QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS 85 + I+YH+ YY P + D EYD L R + + +P+L + + P ++GG Sbjct: 22 ELIAYHNHRYYVLDDPELSDGEYDRLFRELEELESRWPELVTA---DSPSRRVGGAAAEQ 78 Query: 86 LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEK 145 V H++P LSLE + +L F R+ RF DD I + EPK+DG + + YE+ Sbjct: 79 FAPVRHAVPMLSLENAFAEAELYDFENRLRRFLNL-DDQPIAYYAEPKLDGLAVELVYEQ 137 Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDFLALNDE 204 G F + RGDG GE++SA ++ I IP L P +++RGEV ++ F ALN++ Sbjct: 138 GFFTLGSTRGDGLVGENISANLKTIDDIPIRLRGEQAPARLDIRGEVCLTVAGFTALNEQ 197 Query: 205 MIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263 G +ANPRNAA+G LR+L+P R L FF +G+ + Q ++++ + Sbjct: 198 RAQNGESLFANPRNAAAGSLRQLDPAISAARPLEFFAYGVADADPLAVGSQQQVIELLAA 257 Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323 LGF +++++ ++ RS LPY+IDG+V KV+E +LQK+LG + R+PR Sbjct: 258 LGFKTIPHGHLCPDLAAVIAHFQQLAQRRSQLPYEIDGMVAKVNELALQKRLGSKTRTPR 317 Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383 W I+ KF QA+TRLL ++ Q+GRTG +TPVARLEPV +GG ++ ATLHNE I+ Sbjct: 318 WAIAAKFPAVQATTRLLAVEYQVGRTGAVTPVARLEPVTVGGVTVSRATLHNEAEIRR-- 375 Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443 +D+R+ D VLV+RAGEVIP+VV + +R+ + + P+ CP C S+++R Sbjct: 376 ---------KDLRLEDTVLVQRAGEVIPEVVKPLAEKRNGRQREITLPTHCPECGSQLIR 426 Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503 RC C AQ+L L HF + +IEGLG++ L+ A Sbjct: 427 PAAE------VVLRCPNHRHCPAQRLRALIHFCGKAGLDIEGLGQKVLEQLT----AAGL 476 Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563 + DIF L+ Q + G+G+ N+ ++N+RR + L R + +LGIRH+G Sbjct: 477 VGDIPDIFRLRAAQL------APLPGWGEKKAANVIAAVNRRRRVELGRLLAALGIRHIG 530 Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623 A+ LA+ + + + + + +G A A+V ++ P N Sbjct: 531 EVTAQLLARRFGTLEGLLAAGE----------EDFLDIEGIGPQAAAALVTYFAAPGNRE 580 Query: 624 AVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 + L +E+ I S + ++ +FTGTL R +A+ V +LG V+ L+ Sbjct: 581 ILRQLQEELGLEIQPEGGPEQSQPLGDRVFLFTGTLSNWSRSEAKARVKELGGEVATSLN 640 Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R+ ++ G PGSKL KA+++G+ I++EEQF LL Sbjct: 641 RRVTHLVCGSKPGSKLPKAREMGLTILDEEQFRRLLA 677 >gi|332361975|gb|EGJ39777.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK49] Length = 652 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 218/701 (31%), Positives = 357/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ +S L + ++ + YY +P + DSEYD L R + +P P+ P ++ Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ K H P SL+ ++ E+L F R+ + + + + E KIDG Sbjct: 59 VGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRVRK-----EFPQVSYLCELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YEKG V A RGDG GE+++ ++ + IP L + I VRGE Y+ K Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N G +ANPRNAA+G LR+L+ + N + S Q E+ Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQVGSQEEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L K+ L F VN A++ + + ++ R +LPY+IDG+V KV++ ++Q++LG Sbjct: 231 LNKLADLDFSVNPTHILADSIESVWEFIEKIAEERDSLPYEIDGIVIKVNDLAVQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR D V+V +AG++IP V+ ++ ++R + PS CP C Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEAL-EVPSHCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 ++ A I+ L + + + F + S LY +I + S ER +F L Sbjct: 452 N----LVKDVAGIYRL------TIENLLELENFKEKSANKLYTAIQASKKNSAERLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ +R L + + +Q + + +G +IAQ++ +++ Sbjct: 502 GIRHVGSKASRILLEKFHDILRLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + L + + + + +V TG LQK+ R++A+E + LGA Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 VS +S+KTD+++ G + GSKL KAQ+LG++I +E+ L Sbjct: 612 VSGSVSKKTDLVVAGADAGSKLAKAQELGIEIRDEDWLDSL 652 >gi|325694926|gb|EGD36831.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK150] Length = 652 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 220/701 (31%), Positives = 358/701 (51%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ +S L + ++ + YY +P + DSEYD L R + +P P+ P ++ Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ K H P SL+ ++ E+L F R+ + + + + E KIDG Sbjct: 59 VGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRVCK-----EFPQVSYLCELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YEKG V A RGDG GE+++ ++ + IP L + I VRGE Y+ K Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N G +ANPRNAA+G LR+L+ + N + S Q + Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQVGSQEAV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L K+ LGF VN A++ + + ++ R +LPY+IDG+V KV++ ++Q++LG Sbjct: 231 LNKLAALGFSVNPTHILADSIESVWEFIEKIAEERDSLPYEIDGIVIKVNDLAVQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPKWAIAYKFPAEEREAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR D V+V +AG++IP V+ ++ ++R + PS CP C Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEPL-EIPSHCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 399 ESELVHFKDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 ++ A I+ L + + F + S LY +I + S ER +F L Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYTAIQASKENSAERLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ +R L + + +Q + + +G +IAQ++ +++ Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + L + +K V + + +V TG LQK+ R++A+E + LGA Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAVADAALSGMTVVLTGKLQKLTRNQAKEKLQNLGAN 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 VS +S+KTD+++ G + GSKL KAQ+LG++I +E+ L Sbjct: 612 VSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDEDWLDSL 652 >gi|311898479|dbj|BAJ30887.1| putative DNA ligase [Kitasatospora setae KM-6054] Length = 788 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 227/763 (29%), Positives = 343/763 (44%), Gaps = 80/763 (10%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + R + L EI H YY+ P++ D+E+DAL R +A+ A P LA P+ Sbjct: 8 PAEVRTRHAELATEIEEHRSRYYEQDAPVVTDAEFDALMRELEALEAAHPALA---TPDS 64 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+GG V H LSL+ + +L + R+ D + + E K Sbjct: 65 PTRKVGGAPTALFAPVEHRERLLSLDNAMDDAELAAWAERVAAELAGIDYH---YLCELK 121 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG + + YE+G V AA RGDG GED++ +R I +P L PE++EVRGEVY Sbjct: 122 VDGLAVNLTYERGVLVRAATRGDGRVGEDITPNVRTIEGVPHRLRGEDLPELVEVRGEVY 181 Query: 193 ISKNDFL--------------ALNDEMIAVGRKPYA------NPRNAASGILRRLNP-TD 231 +F N+E G++P A NPRNAA+G LR+ +P Sbjct: 182 FPTAEFEALNASFEAENARRRQENEERAKEGKRPRALIRLFMNPRNAAAGSLRQKDPLIT 241 Query: 232 ITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 R L VHG+G + Q +R G P T + ++ Sbjct: 242 AARPLRLVVHGIGARTGFDIDNQSHAYDLLRGWGLPTARHNAVVGTLDEVRAFIARFGER 301 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R ++ ++IDG+V KVDE +LQ +LG ++SPRW I+ K+ ++ + RL DI I IGRTG Sbjct: 302 RHSVEHEIDGVVVKVDEIALQGRLGATSKSPRWAIAWKYPPEEVTGRLTDIRIGIGRTGR 361 Query: 352 LTPVARLE-PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410 TP A LE PV + G+++ ATLHN+ +K + + +GD V++++AG+VI Sbjct: 362 ATPYAVLEKPVKVAGSMVQYATLHNQQVVK-----------AKGVLLGDTVVLRKAGDVI 410 Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 P++V + + R + F P+ CP C S + + RC C AQ E Sbjct: 411 PEIVGPVHDLRDGGEREFVMPADCPECGSGLRPM-----SEGDIDLRCPNTRYCPAQIRE 465 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA-FSIRIPADIFTLQRRQ------------ 517 R+ R+ ++EG G + +P +R DIF L + Sbjct: 466 RVAFLAGRNCLDVEGFGYVAATALTQPLEPTEPPVRDEGDIFGLTEERLLPIRVLVRDPR 525 Query: 518 ------------QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 Q N G T L D++ R L RF+ L IRHVG Sbjct: 526 TSMPKLDDETGEQKEVFFFANNAGTARKDTTALLDNLRAARTSPLWRFLNGLSIRHVGPV 585 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 A++LA+ + D L V +G IA+A+ E+Y + + Sbjct: 586 AAQALAREFRDLDRVFAA----------DETELTAVEGIGPTIARAVKEWYAEDWHREIL 635 Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 E E+ +E +V TGTL R A+E + GA V+ +S+KT Sbjct: 636 EKWRAAGVVFTEEAEELGERPLEGLTVVVTGTLAGHTRDGAKEALASRGAKVTGSVSKKT 695 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIH 728 ++ GDNPGSK +KA QLG+ ++++ F LL++ R H Sbjct: 696 HFVVAGDNPGSKYDKAVQLGLPVLDDAGFAVLLERGADAARAH 738 >gi|284032790|ref|YP_003382721.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836] gi|283812083|gb|ADB33922.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836] Length = 709 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 216/710 (30%), Positives = 348/710 (49%), Gaps = 37/710 (5%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + R+ ++L +EI H YY + I D+++DAL I + +L P+ Sbjct: 17 PAEVRERHAALSREIEEHRFRYY-MATSTISDADFDALMHELQGIEQQYQEL---RTPDS 72 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+G ++ VTH SL ++ E + + R+ R + + F E K Sbjct: 73 PTQKVGVPISTLFAPVTHPTRMESLGNAFSAEQMEAWAKRLEREVTAQQIHDSGFLCELK 132 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG + + YE G+ V A RGDG +GEDV+ +R I +IP L+ + P +EVRGEVY Sbjct: 133 VDGLALDLVYENGRLVTGATRGDGRTGEDVTLNVRTIDSIPNELAGDDLPSFLEVRGEVY 192 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251 DF LN +++ G+ P++NPRN+A+G LR+ +P R L F VHGLGK Sbjct: 193 FRVEDFEQLNAQLVEAGKDPFSNPRNSAAGSLRQKDPRVSAARPLRFVVHGLGKVEGYRV 252 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + E ++++ G PV++ R+ T + + R ++ ++IDG+V KVDE L Sbjct: 253 RRLSEAYEQLKAWGLPVSDRARRVETLAEVNEFIAHYGENRHSVDHEIDGVVVKVDEVDL 312 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+ LG + +PRW I++K+ ++ +T+LLDI++ +GRTG +TP ++EPV + G+ + A Sbjct: 313 QRALGSTSSAPRWAIAYKYPPEEVTTKLLDIEVNVGRTGRVTPYGKMEPVRVAGSTVEFA 372 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN ++ + + +GD V++++AG+VIP+++ ++ R +A PF P Sbjct: 373 TLHNAREVER-----------KGVWIGDTVVLRKAGDVIPEILGPVIELRPQEAHPFRMP 421 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C + + + RC +C AQ ERL H R AF+IE LG + Sbjct: 422 TQCPSCGTTLRPM-----KEGDVDIRCPNAQSCPAQLRERLFHLAGRSAFDIEVLGFKAA 476 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 D E I D+F L + + G + L ++ + L Sbjct: 477 DALISGE----LITDEGDLFDLTEQDLGRSPFFTTKAGALSANAKRLLANLETAKTQPLA 532 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R + +L IRHVG A +LA Y L ++ VG IA A Sbjct: 533 RGLVALSIRHVGPTAAAALAAAYDDIDAIQAAGE----------DELAQIEGVGPTIAHA 582 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++E++Q + V V + +V TGT++ R +A E + Sbjct: 583 VIEWFQVDWHQQIVRKWKAAGVQLRQERTGPTVEQTLTGLSVVVTGTVEGFSRDEATEAI 642 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G + +S+KT ++VGD+PGSK +KA QLGV I++ F LL Q Sbjct: 643 VSRGGKAAGSVSKKTSFVVVGDSPGSKYDKAVQLGVPILDAAGFEVLLDQ 692 >gi|120602570|ref|YP_966970.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4] gi|166215379|sp|A1VDM7|DNLJ2_DESVV RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 2 gi|120562799|gb|ABM28543.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4] Length = 797 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 238/720 (33%), Positives = 372/720 (51%), Gaps = 58/720 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 E+AR+ + L ++ H+ YY+ P I D+EYD L R + +P L D Sbjct: 36 PEEARQRAAQLRADLERHNRLYYELDTPEISDAEYDVLYRELVGLERRWPAL---RDEAS 92 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE+ L K H++ SL+ ++ ++ F+ R+Y D F +PK Sbjct: 93 PTQRVGGEVLEGLEKQAHTLRMYSLDNAFSRDEWGAFMQRMYNAL---PDAPSAFWCDPK 149 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG + + YE G F A RG+G GE V+A +R + +P L + P IEVRGEV Sbjct: 150 MDGLALEVIYENGVFTSALTRGNGEVGEVVTAAMRTVRNLPLALRGDDVPRRIEVRGEVV 209 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS---- 247 I+K DF LN A G K +ANPRNAA+G +R+L+ T R L F +G+G+ Sbjct: 210 IAKADFEQLNARQSAAGGKLFANPRNAAAGSVRQLDTTVTAGRPLQFLAYGVGQVVLEGG 269 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 ++ ++R GF R + + +YY + + R +L +IDG+V K+D Sbjct: 270 TAPWTTHSGLMARLREWGFDTPPEGRLCASPDEVWAYYEALGARRESLAIEIDGVVAKLD 329 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + Q+ LG AR+PRW ++ KF QA TRL DI +Q+GRTG+LTPVA LEPV +GG Sbjct: 330 DTEAQEALGFTARAPRWALALKFPAMQARTRLDDIRVQVGRTGVLTPVAILEPVRVGGVE 389 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHNED I+ + + +GD VLV+RAG+VIP+VV +V ER D +P Sbjct: 390 VSRATLHNEDEIR-----------AKGLMLGDMVLVQRAGDVIPEVVRPLVEERTGDERP 438 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP C S VVR AHRC + C A + + + HFVS+ ++ G+G Sbjct: 439 FVFPENCPECDSPVVRPQGE------VAHRCVNVM-CPAVRRQSIIHFVSKAGLDVRGVG 491 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ + + P +F+L + G S N +++ R Sbjct: 492 ERWVQQLVD----GGHVTSPVGLFSLTKLDLMRF------ERMGPTSAANFVTALDAART 541 Query: 548 -ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L R I +LGIRHVG + AR+LA + + D +L ++P +G Sbjct: 542 GATLVRLICALGIRHVGEQTARTLAANFTDLDALREA----------DAETLQQLPDIGP 591 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVS-------PSIGRHEKNVSSEIENKKLVFTGTLQ 659 +A +I F+ N N+ +E L P + ++ K++FTG+L Sbjct: 592 EVAGSIRTFFANEGNLELLERLRAIGLWPKRQDAPPAPEGADAIVRPLQGLKVLFTGSLT 651 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ R +A++ GA +++ +++ D+++VG PGSKLEKA++LG+++M E F +L+ Sbjct: 652 RVGRTEAEDMARAAGANIASSVTKSLDLLVVGGKPGSKLEKARKLGIRVMEEADFFAMLE 711 >gi|262282968|ref|ZP_06060735.1| NAD-dependent DNA ligase LigA [Streptococcus sp. 2_1_36FAA] gi|262261220|gb|EEY79919.1| NAD-dependent DNA ligase LigA [Streptococcus sp. 2_1_36FAA] Length = 652 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 217/701 (30%), Positives = 356/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +S L ++ + YY P + DSEYD L R ++ +P+ P P ++ Sbjct: 2 KDRMSELVSLLNRYAHEYYTKDAPSVSDSEYDQLYRELVSLEEQYPNEIL---PESPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ K H P SL+ ++ +L F R+ + + + + E KIDG Sbjct: 59 VGGKVLDGFEKYQHQYPLYSLQDAFSRAELVAFDERVRK-----EFPEVSYLCELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G V A RGDG GE+++ ++ + IP L + I VRGE Y+ K Sbjct: 114 SISLAYENGILVAGATRGDGSIGENITENLKRVKDIPLTLPEPL--TITVRGECYMPKAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N G +ANPRNAA+G LR+L+ + + N + S Q ++ Sbjct: 172 FDAVNQLRQENGEAEFANPRNAAAGTLRQLDTSVV-AKRNLATFLYQEASPTSEATQEDV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+K+ LGF VN A+T + + ++ R LPY+IDG+V KV+ + Q++LG Sbjct: 231 LEKLSQLGFSVNEKRVLASTIDQVWDFIEKVGQERDKLPYEIDGIVIKVNHLAAQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI+ +DIR D V+V +AG++IP V+ ++ ++R D PS CP C Sbjct: 351 YIR-----------EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSDEHL-DVPSQCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 QS ++ + A RC L C AQ +E L HF SRDA NI GLG ++ F Sbjct: 399 QSDLLHFEDE------VALRCINPL-CPAQIMEGLAHFASRDAMNISGLGPAVVEKLFAK 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + +R A I+ L + F + S LY++I ++ S E+ +F L Sbjct: 452 D----LVRDVAGIYRLSIEDL------LQLENFKEKSANKLYNAIQASKSNSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ +R L + + + AQ + + + +G +IA+++ ++ Sbjct: 502 GIRHVGSKASRILLEKFHDIPSLAQA----------EQEEIASIDSLGMVIAKSLHSYFA 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 ++ L + + + + K +V TG L+ + R +A+E + +LGA Sbjct: 552 QEGTQILLKELEEAGVNLAYLGEKVAADAVLSGKTVVLTGKLETLTRTQAKEKLLRLGAN 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTD++I G + GSKL KAQ+LG++I +E L Sbjct: 612 VAGSVSKKTDLVIAGVDAGSKLAKAQELGIEIQDEAWLEQL 652 >gi|89069525|ref|ZP_01156869.1| DNA ligase, NAD-dependent [Oceanicola granulosus HTCC2516] gi|89044860|gb|EAR50950.1| DNA ligase, NAD-dependent [Oceanicola granulosus HTCC2516] Length = 739 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 284/723 (39%), Positives = 415/723 (57%), Gaps = 60/723 (8%) Query: 41 PIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEK 100 PI+ D+ YDALKRR A+ FP+L R+ + P ++G KVTH + LSL Sbjct: 30 PIMDDAAYDALKRRNAALEARFPELMRA---DSPTGQVGAAPAAGFGKVTHRVRMLSLLN 86 Query: 101 IWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSG 160 + D+R F + R+ D + +T EPKIDG +++RYE G+ V AA RGDG +G Sbjct: 87 AFEEADIRDFDDGVRRYLGLAADAPLRYTAEPKIDGLSLSLRYEDGRLVQAATRGDGTTG 146 Query: 161 EDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAA 220 E+V+ R I IP L P+++EVRGEVY+S DF ALN K +ANPRNAA Sbjct: 147 ENVTDNARTIDDIPDRLEGA-PDVLEVRGEVYMSHADFAALNARQSEAAGKTFANPRNAA 205 Query: 221 SGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFH 279 +G LR+L+P R L FF + G+ S A+ Q ++++ LGF VN R + Sbjct: 206 AGSLRQLDPEITRARPLRFFAYAWGELSAPLAETQMGAIERLGALGFQVNPLTRLCDGPD 265 Query: 280 GIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRL 339 ++++Y +++ R+TL YDIDG+VYKVD+ +LQ +LG R+ +PRW +HKF + A TRL Sbjct: 266 KMIAHYRAIEAQRATLGYDIDGVVYKVDDLALQSRLGFRSTTPRWATAHKFPAELAWTRL 325 Query: 340 LDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGD 399 I+IQ+GRTG L+PVARL PV +GG +++NATLHNEDYI G ASG +RGG+DIR GD Sbjct: 326 ERIEIQVGRTGALSPVARLTPVTVGGVVVSNATLHNEDYIAGRAASGDEIRGGKDIREGD 385 Query: 400 RVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCT 459 V V RAG+VIPKV D+ + +R DA P+ FP CP C S VR+ A RCT Sbjct: 386 WVQVYRAGDVIPKVADVDLAQRPADAAPYVFPETCPECGSEAVREEG------DAVRRCT 439 Query: 460 GGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT 519 GGL C AQ +E+LKHFVSR AF+IEGLG +Q++ F+ E I PADIFTL+ R Sbjct: 440 GGLVCPAQAVEKLKHFVSRAAFDIEGLGAKQVEQFYHDE----WITEPADIFTLRDRYGP 495 Query: 520 ST-TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578 T+++N G+G+ S NL+D+I +RR I+L R +F+LGIRHVG A LA+++ +++ Sbjct: 496 GKLTQLKNREGWGEKSAENLFDAIEERRTIALARLVFALGIRHVGEVAASDLARHFSTWE 555 Query: 579 NFAQEINN-------------------------------------------IIAHNNDDW 595 ++ + W Sbjct: 556 ALVATVDAAAPAAHRVQAAEAALLAERAAARDEGRRARLAEVRDRVWAEPPLPEGARAAW 615 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655 ++ + +G +A+++V +++ L ++ + S + K +VFT Sbjct: 616 DEIVGIEGIGATVARSLVLTMAQEAERASIDRLAAGLTIEPAE-QVATDSPVAGKTIVFT 674 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 G+L+K+ R +A+ LGA VS +S KTD+++ G GSK +KA +LG++ ++E+ +L Sbjct: 675 GSLEKMTRAEAKARAEALGAKVSGSVSAKTDLVVAGPGAGSKGKKAAELGIETIDEDAWL 734 Query: 716 FLL 718 L+ Sbjct: 735 ALI 737 >gi|319939188|ref|ZP_08013551.1| DNA ligase [Streptococcus anginosus 1_2_62CV] gi|319811584|gb|EFW07860.1| DNA ligase [Streptococcus anginosus 1_2_62CV] Length = 652 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 205/701 (29%), Positives = 344/701 (49%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L + ++ + YY P + DSEYD L + +P+ + P+ P ++ Sbjct: 2 KDRMLELVKLLNQYAHEYYTTDNPSVSDSEYDKLYHELLDLEKQYPEFVQ---PDSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ K H P SL+ ++ E+L F RI + D + + E KIDG Sbjct: 59 VGGKVLEGFEKYQHQYPLYSLQDAFSREELDVFDARIRK-----DFPDVSYLCELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G V A RGDG GE+++ ++ + IP L + + VRGE Y+ ++ Sbjct: 114 SISLMYENGILVAGATRGDGSVGENITENLKRVKDIPLKLPSEV--DMTVRGECYMPRSS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N G +ANPRNAA+G LR+L+ + N + S A Q + Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAIV-AKRNLATFLYQEASPTSATSQEAV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ GF VN A++ + E+ R LPYDIDG+V KV++ +Q++LG Sbjct: 231 LNQLSKNGFSVNERHILAHSMDEAWQFIEEINQEREQLPYDIDGVVIKVNDLVVQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR D V+V +AG++IP V+ ++ ++R + P CP C Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRQSKEKL-EIPKNCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S ++ + A RC C AQ E L HF SRDA NI GLG ++ F Sbjct: 399 NSELIHFEDE------VALRCINPR-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFDQ 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + + A I+ L + + F + S LY +I + S E+ +F L Sbjct: 452 Q----LVNDVAGIYRLTVKDL------LQLENFKEKSANKLYTAIQASKENSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ ++ L +++ + A+ + + +G +IA+++ ++ Sbjct: 502 GIRHVGSKASQILLEHFHDLEQLAKA----------KREEIAALDSLGMVIAESLSSYFA 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + L + + + + +V TG L+++ R +A++ + LGA Sbjct: 552 QEGTHILLSELKEAGLNFTYLGEKVAADAALSGLTVVLTGKLERLNRSEAKKKLESLGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KT +++ G + GSKL KAQ+LG+ I +E L Sbjct: 612 VTNSVSKKTSLVVAGADAGSKLTKAQELGIIIRDEAWLESL 652 >gi|311233982|gb|ADP86836.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris RCH1] Length = 818 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 240/731 (32%), Positives = 374/731 (51%), Gaps = 58/731 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 E+AR+ + L ++ H+ YY+ P I D+EYDAL R + +P L D Sbjct: 55 PEEARQRAAQLRADLERHNRLYYELDTPEISDAEYDALYRELVGLETRWPAL---RDEAS 111 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE+ L K H++ SL+ ++ ++ FI R+Y D F +PK Sbjct: 112 PTQRVGGEVLEGLEKQAHTLRMYSLDNAFSRDEWGAFIQRMYNAL---PDAPSAFWCDPK 168 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG + + YE G F A RG+G GE V+A +R + +P L + P IEVRGEV Sbjct: 169 MDGLALEVIYENGVFTSALTRGNGEVGEVVTAAMRTVRNLPLALRGDDVPRRIEVRGEVV 228 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS---- 247 I+K DF LN A G K +ANPRNAA+G +R+L+ T R L F +G+G+ Sbjct: 229 IAKADFEQLNARQSAAGGKLFANPRNAAAGSVRQLDTTVTAGRPLQFLAYGVGQVVLEGG 288 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 ++ ++R GF R + + +YY + + R +L +IDG+V K+D Sbjct: 289 TAPWTTHSGLMARLREWGFDTPPEGRLCASPDEVWAYYEALGARRESLAIEIDGVVAKLD 348 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + Q+ LG AR+PRW ++ KF QA TRL DI +Q+GRTG+LTPVA LEPV +GG Sbjct: 349 DTEAQEALGFTARAPRWALALKFPAMQARTRLDDIRVQVGRTGVLTPVAILEPVRVGGVE 408 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHNED I+ + + +GD VLV+RAG+VIP+VV +V ER D +P Sbjct: 409 VSRATLHNEDEIR-----------AKGLMLGDMVLVQRAGDVIPEVVRPLVEERTGDERP 457 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP C S VVR AHRC + C A + + + HFVS+ ++ G+G Sbjct: 458 FVFPENCPECDSPVVRPQGE------VAHRCVNVM-CPAVRRQSIIHFVSKAGLDVRGVG 510 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ + + P +F L + G S N +++ R Sbjct: 511 ERWVQQLVD----GGHVTSPVGLFLLTKLDLMRF------ERMGPTSAANFVTALDAART 560 Query: 548 -ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L R I +LGIRHVG + AR+LA + + D +L ++P +G Sbjct: 561 GATLVRLICALGIRHVGEQTARTLAANFTDLDALREA----------DAETLQQLPDIGP 610 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVS-------PSIGRHEKNVSSEIENKKLVFTGTLQ 659 +A +I F+ N N+ +E L P + ++ K++FTG+L Sbjct: 611 EVAGSIRSFFANEGNLELLERLRAIGLWPKRQDAPPASEGADAIVLPLQGLKVLFTGSLT 670 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ R +A++ GA +++ +++ D+++VG PGSKLEKA++LG+++M E F +L Sbjct: 671 RVGRTEAEDMARAAGANIASSVTKSLDLLVVGGKPGSKLEKARKLGIRVMEEADFFAMLA 730 Query: 720 QYNTTLRIHDD 730 ++ + Sbjct: 731 SGVASVDASEA 741 >gi|46580019|ref|YP_010827.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str. Hildenborough] gi|81404693|sp|Q72BM7|DNLJ_DESVH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|46449435|gb|AAS96086.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str. Hildenborough] Length = 799 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 240/731 (32%), Positives = 374/731 (51%), Gaps = 58/731 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 E+AR+ + L ++ H+ YY+ P I D+EYDAL R + +P L D Sbjct: 36 PEEARQRAAQLRADLERHNRLYYELDTPEISDAEYDALYRELVGLETRWPAL---RDEAS 92 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE+ L K H++ SL+ ++ ++ FI R+Y D F +PK Sbjct: 93 PTQRVGGEVLEGLEKQAHTLRMYSLDNAFSRDEWGAFIQRMYNAL---PDAPSAFWCDPK 149 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG + + YE G F A RG+G GE V+A +R + +P L + P IEVRGEV Sbjct: 150 MDGLALEVIYENGVFTSALTRGNGEVGEVVTAAMRTVRNLPLALRGDDVPRRIEVRGEVV 209 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS---- 247 I+K DF LN A G K +ANPRNAA+G +R+L+ T R L F +G+G+ Sbjct: 210 IAKADFEQLNARQSAAGGKLFANPRNAAAGSVRQLDTTVTAGRPLQFLAYGVGQVVLEGG 269 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 ++ ++R GF R + + +YY + + R +L +IDG+V K+D Sbjct: 270 TAPWTTHSGLMARLREWGFDTPPEGRLCASPDEVWAYYEALGARRESLAIEIDGVVAKLD 329 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + Q+ LG AR+PRW ++ KF QA TRL DI +Q+GRTG+LTPVA LEPV +GG Sbjct: 330 DTEAQEALGFTARAPRWALALKFPAMQARTRLDDIRVQVGRTGVLTPVAILEPVRVGGVE 389 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHNED I+ + + +GD VLV+RAG+VIP+VV +V ER D +P Sbjct: 390 VSRATLHNEDEIR-----------AKGLMLGDMVLVQRAGDVIPEVVRPLVEERTGDERP 438 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP C S VVR AHRC + C A + + + HFVS+ ++ G+G Sbjct: 439 FVFPENCPECDSPVVRPQGE------VAHRCVNVM-CPAVRRQSIIHFVSKAGLDVRGVG 491 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ + + P +F L + G S N +++ R Sbjct: 492 ERWVQQLVD----GGHVTSPVGLFLLTKLDLMRF------ERMGPTSAANFVTALDAART 541 Query: 548 -ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L R I +LGIRHVG + AR+LA + + D +L ++P +G Sbjct: 542 GATLVRLICALGIRHVGEQTARTLAANFTDLDALREA----------DAETLQQLPDIGP 591 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVS-------PSIGRHEKNVSSEIENKKLVFTGTLQ 659 +A +I F+ N N+ +E L P + ++ K++FTG+L Sbjct: 592 EVAGSIRSFFANEGNLELLERLRAIGLWPKRQDAPPASEGADAIVLPLQGLKVLFTGSLT 651 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ R +A++ GA +++ +++ D+++VG PGSKLEKA++LG+++M E F +L Sbjct: 652 RVGRTEAEDMARAAGANIASSVTKSLDLLVVGGKPGSKLEKARKLGIRVMEEADFFAMLA 711 Query: 720 QYNTTLRIHDD 730 ++ + Sbjct: 712 SGVASVDASEA 722 >gi|257387145|ref|YP_003176918.1| NAD-dependent DNA ligase LigA [Halomicrobium mukohataei DSM 12286] gi|257169452|gb|ACV47211.1| DNA ligase, NAD-dependent [Halomicrobium mukohataei DSM 12286] Length = 700 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 238/722 (32%), Positives = 367/722 (50%), Gaps = 46/722 (6%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 + P+E S ++AR++ L + I YHD YY + P+I D YDAL R +A+ AF Sbjct: 22 EFEPVEDFSDDEAREQAQRLREAIRYHDHRYYVLADPVIGDRAYDALFARLEALEDAFD- 80 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-D 123 + P ++GGE L V H P S+++ ++R+F R+ D Sbjct: 81 ---LDREASPTQRVGGEPLDELASVEHVAPMGSIDQGGEASEVREFDRRVRDRLSDAGYD 137 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 I + EPK DG + I YE G+F AA RGDG GEDV+ +R I ++P+ L + P+ Sbjct: 138 GEIEYFCEPKFDGLSVEIVYEDGQFQRAATRGDGAVGEDVTENVRTIASVPQRLRGDYPD 197 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243 + VRGEVY+ ++ F A N E I G P+ANPRNAA+G LR+L+P+ Sbjct: 198 YLAVRGEVYMPRDAFTAYNSERIERGEDPFANPRNAAAGTLRQLDPSVTAERPLSIFLFG 257 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 + + + ++ G V + + + Y + R L Y+IDG+V Sbjct: 258 VLDASVDFDSHGALHERFPEWGLRVCDRTTVVDDIDAAIDYRDRQLDARDDLDYEIDGVV 317 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KVD+ + LG +R+PRW ++KF ++ T L DI +Q+GRTG LTPVA L+PV + Sbjct: 318 IKVDDRRACELLGATSRAPRWAFAYKFPARKERTTLRDIAVQVGRTGRLTPVALLDPVEV 377 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++ A+LHN I+ L GD V +KRAG+VIP VV+++ Sbjct: 378 GGVTVSRASLHNPAQIEELGVDA-----------GDTVRIKRAGDVIPDVVEVVE---SS 423 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 FSFP CP+C+S V + CTGGLAC AQ+ ++H+ SRDA +I Sbjct: 424 GEATFSFPDRCPVCESAV--------ERDGPMAFCTGGLACPAQRERAIEHYASRDALDI 475 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EG+G++ + +E + PAD++ L + ++ + G+G S NL ++ Sbjct: 476 EGVGEKAVAKLLDAE----LVESPADLYDL------TVDELAALSGWGQRSAENLVAEVD 525 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 R L F+ +LGI VG AR+LA+ + S++ + D + V Sbjct: 526 ASREPPLANFLVALGIHDVGTVTARNLAREFGSFEAIREA------GAAGDTDAFEAVDD 579 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 VG ++A++I EF++ RN ++ LL V P E ++ + VFTG+L R Sbjct: 580 VGPVVAESICEFFRGERNEAVLDDLLDHVDPQPADTE--TGDALDGQTFVFTGSLAGYTR 637 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722 +AQ+ V G ++ +S TD ++VGDNPG SK + A+ GV+ +++E F LL Sbjct: 638 SEAQDLVEAHGGSATSSVSGNTDYLVVGDNPGQSKRDDAEAEGVETIDQESFEELLADRG 697 Query: 723 TT 724 Sbjct: 698 IE 699 >gi|317051097|ref|YP_004112213.1| DNA ligase, NAD-dependent [Desulfurispirillum indicum S5] gi|316946181|gb|ADU65657.1| DNA ligase, NAD-dependent [Desulfurispirillum indicum S5] Length = 660 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 244/708 (34%), Positives = 371/708 (52%), Gaps = 54/708 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + R+ + L + D+ YY + PI+ D EYD L R A+ FP + Sbjct: 1 MSAAE-RERIDQLTALLQKADEAYYTLADPIMGDGEYDGLYRELRALEARFPQYVHA--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +IG + HS+P LSL + +L F+ ++ R + + FT+E Sbjct: 57 DSPTRRIGERLEGGSRAFVHSVPMLSLGNTYEQAELEDFLRKVRR----DSGDHVRFTVE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG +++ Y G F AA RGDG GE++S IR I ++P L + +E+RGEV Sbjct: 113 PKIDGVAVSLHYRDGVFSVAATRGDGLQGEEISHNIRTIRSLP--LEIPAAGAMEIRGEV 170 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250 YI + F +N + + G YANPRN A+G L+ L+P +R L F + L Sbjct: 171 YIPRQAFERINQQRLEQGESLYANPRNLAAGSLKLLDPAQSSRRGLQIFCYSL---QGFP 227 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 ++ LQ +R GFPV++ VRQ + + ++ R LP+DIDG V KVD+ Sbjct: 228 HDSHFQCLQTLRDWGFPVSDLVRQCASDAEVWDAVQHIRQQRELLPFDIDGAVIKVDQLH 287 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 L ++LG A+ PR+ I++K+ +Q STRL DI Q+GRTG++TPVA L+PV + G+ I+ Sbjct: 288 LHEELGTTAKIPRYAIAYKYEAQQVSTRLRDITFQVGRTGVITPVAELDPVLLAGSTISR 347 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN + ++ +DIR+GD+VL+++ G+VIPKVV I+ R DA Sbjct: 348 ATLHNFEELRR-----------KDIRIGDQVLIEKGGDVIPKVVKPIMALRSADASEVVP 396 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C S + N H C AQ+L L HFVSRDA +I G+G++ Sbjct: 397 PENCPECGSPLHWSDNG-------VHLYCQNPLCPAQRLGALLHFVSRDAMDIAGMGEKV 449 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F + DI+ L + S + GFG S NL S+ + L Sbjct: 450 VQRFLDE----GILTDIPDIYHLVYERVAS------LDGFGVKSALNLQASVEASKAHPL 499 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F+LGIRHVG + A+ LA+++ S + Q L V VG+I+A+ Sbjct: 500 ERVLFALGIRHVGKKTAQLLARHFGSMERLMQA----------SIEELTAVEEVGEIVAR 549 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +I F + P ++ VEAL + V+S + + +VFTG L + R + +E Sbjct: 550 SIYSFLREPASVALVEALKRSGLNMESSAPRAQVASGLSGRSVVFTGKLSR-PRKEYEEM 608 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 GA V + +S D ++ G++ GSKL+KA++LGV I++EE+F+ L Sbjct: 609 AQLGGARVLSGVSGSLDYLVCGEDAGSKLDKARKLGVAIIDEEEFVRL 656 >gi|269119219|ref|YP_003307396.1| DNA ligase, NAD-dependent [Sebaldella termitidis ATCC 33386] gi|268613097|gb|ACZ07465.1| DNA ligase, NAD-dependent [Sebaldella termitidis ATCC 33386] Length = 669 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 216/712 (30%), Positives = 365/712 (51%), Gaps = 45/712 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + +K L+ I +++ YY+ ++ ++ D EYD L + ++I +P+L + Sbjct: 1 MEQTGIKKRYEELKDLIRKYNEHYYEKNESLVTDYEYDMLLKEMESIEKEYPELKDTV-- 58 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 K+GG + KV H +P LSL +NI ++ F RI + + D I + LE Sbjct: 59 -SVTEKVGGRASGKFSKVVHKVPMLSLSNTYNIGEIEDFDKRIKKVIGE--DQKIEYVLE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG I+I+YE G+ V RGDG GEDV+ I I +IP++L + +EVRGE+ Sbjct: 116 LKLDGLSISIQYENGRLVRGITRGDGEIGEDVTENIMQIDSIPQILKEPV--TLEVRGEI 173 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 + ++F +N G +ANPRNAASG +R+L + R L+ +++ L Sbjct: 174 VLPISNFNKVNKMREEAGEDVFANPRNAASGTIRQLESSIVKDRGLDCYLYFLVNAQNYN 233 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + ++ + LGF F + + R L ++ DGLV K+DEF+ Sbjct: 234 LQKHSDSIKYLEKLGFKTTKVFEIYKDFSLLEKAIEKWHVERERLDFETDGLVIKLDEFA 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LG +SPRW I++KF ++A T+LLDI Q+GRTG++TPVA LEPV + G+++ Sbjct: 294 YYSALGSTTKSPRWAIAYKFPAEKAKTKLLDITFQVGRTGVITPVAELEPVELSGSVVRR 353 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D IK +DI++GD V +++A E+IP+V++ +++ER + Sbjct: 354 ASLHNFDEIKR-----------KDIKIGDFVYIEKAAEIIPQVIEPVISERTGSEKEIEM 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C ++++ + A +C AC ++++FVSRDA NI GLG++ Sbjct: 403 PESCPSCGHKLIKIED------QVAIKCINP-ACPEIIKRKIEYFVSRDAMNITGLGEKI 455 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F + I+ DI++L ++ ++E + G SV NL +SI + + Sbjct: 456 IEKFIE----LGKIKDIVDIYSLHEYRE----ELEKLEKMGKKSVDNLLNSIEESKKREY 507 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + ++SLGI VG A LAK +L+ N + + L+ V +GD +A+ Sbjct: 508 SKVLYSLGIPFVGKFTANLLAKEFLNIDNL----------KSKETEDLLEVKGIGDKVAK 557 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ F + N + L + + I+ K + TG L+K R + ++ + Sbjct: 558 SVNMFLNDENNWNLISKLKETGLQFEEEEVFIEDNPIKGKTFLATGKLEKYTRDEIKDII 617 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF-LFLLQQY 721 G + +S+ + +I G+ GSKL+KA LGV ++NEEQF L++ Sbjct: 618 EAKGGKYLSGVSKNLNYLIAGEKAGSKLKKANDLGVIVLNEEQFEKEFLEEE 669 >gi|168483195|ref|ZP_02708147.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1873-00] gi|168492012|ref|ZP_02716155.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC0288-04] gi|221231854|ref|YP_002511006.1| DNA ligase [Streptococcus pneumoniae ATCC 700669] gi|225854613|ref|YP_002736125.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae JJA] gi|254781427|sp|B8ZPV9|DNLJ_STRPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781431|sp|C1CEA4|DNLJ_STRZJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|172043461|gb|EDT51507.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1873-00] gi|183573785|gb|EDT94313.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC0288-04] gi|220674314|emb|CAR68857.1| DNA ligase [Streptococcus pneumoniae ATCC 700669] gi|225722247|gb|ACO18100.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae JJA] gi|332201605|gb|EGJ15675.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA47368] Length = 652 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 213/700 (30%), Positives = 356/700 (50%), Gaps = 51/700 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K ++ L ++ + YY P + DSEYD L R + A+P+ + + P +++ Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVADSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 60 GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YEKG V RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q + L Sbjct: 173 DQVNQVRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN A I ++ E+ R LPYDIDG+V KV++ + Q++LG Sbjct: 232 KYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCN 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S ++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A ++ ADI+ LQ + G + S LY +I + S E+ +F LG Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG+++++ L +Y+ S +N +Q D + + +G +IA+++ ++ Sbjct: 503 IRHVGSKVSQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFAT 552 Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + + L + + + + +V TG L++++R +A+ + LGA V Sbjct: 553 EGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KTD+++VG + GSKL+KAQ+LG+++ +E L Sbjct: 613 TGSISKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652 >gi|15807063|ref|NP_295792.1| DNA ligase [Deinococcus radiodurans R1] gi|81550876|sp|Q9RSQ5|DNLJ_DEIRA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|6459863|gb|AAF11619.1|AE002043_4 DNA ligase [Deinococcus radiodurans R1] Length = 700 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 216/713 (30%), Positives = 348/713 (48%), Gaps = 48/713 (6%) Query: 12 LSIE--QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 ++ R +L E++ H+ YY+ P I D EYD L R + A P+ A Sbjct: 7 MTDAPPDPRARYLALRDEVALHNRAYYEQDAPTIPDDEYDRLARELRELEAAHPEFA--- 63 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK-DDNSIFF 128 D + P+ +GG + + VTH SL+ +++ ++LR + ++ R D + F Sbjct: 64 DDHSPVQTVGGAPSSAFEPVTHPTQMTSLDNVFDDDELRDWQEKLARSLGLPLDTDDFTF 123 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T E KIDG + + Y G+ +AA RG+G GE V+A + IP IP+ L E+ EVR Sbjct: 124 TGELKIDGLSVNLYYLDGELQWAATRGNGRVGEIVTAQVLTIPDIPQKLEGLKGEL-EVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVY+S+ DF A N + +G NPRN A+G LR+ +P TR+L ++ +GK Sbjct: 183 GEVYLSRADFAAFNAQAEELGTPLLKNPRNGAAGALRQKDPEVTRTRHLKAILYAVGKRD 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + A+ Q+E+L+ + GFP + Y+ M + +D DG V K+D Sbjct: 243 GVPARTQWEVLEWLSAQGFPTSRSSEHLRGIAAAADYHARMIRAHADFEFDADGTVLKLD 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 S Q++ G +R+PRW I++KF ++ T L I + +GRTG L P+A L P I G+ Sbjct: 303 SLSQQEEAGFTSRAPRWAIAYKFPVEEVETVLESITVNVGRTGKLAPLAHLSPRLIEGST 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHNEDYI+ + D+RVGD VLV+++G VIP+++ ++ ++R DA P Sbjct: 363 VSKATLHNEDYIRDM-----------DLRVGDTVLVRKSGGVIPQIMRVLPDKRPADAAP 411 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP+ CP+C VR A C AC AQ ER+++FVSR A ++ G+G Sbjct: 412 FEFPTHCPVCGHEAVRAEG------DANTYCPNP-ACPAQSFERIRYFVSRGAMDVRGIG 464 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ + I A ++TL Q + G+ N+ + + Sbjct: 465 EKLVTQLLHE----GLIHDAAGLYTLSAEQLAG------LERGGEKKAGNILGQLEASKT 514 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 L R I +LG+ HVG A++LA+ + + + + VP +G I Sbjct: 515 KPLWRLINALGMSHVGQRNAQALARAFGTLEGLLAATP----------EQIEAVPGLGGI 564 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 IAQ++ +P + L + V TG L + R + Sbjct: 565 IAQSVTASLADPAMRDLIARLQASGVAPQAEEVTRTDQ-LSGLNFVLTGALSR-PREVIK 622 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G V+ +++KT ++ G++ GSKL +A +LGV +++E LL + Sbjct: 623 AELEAAGGRVTGSVTKKTSYLVAGEDAGSKLARAGELGVPVLDEAGLAALLAE 675 >gi|329936847|ref|ZP_08286526.1| NAD-dependent DNA ligase LigA [Streptomyces griseoaurantiacus M045] gi|329303772|gb|EGG47656.1| NAD-dependent DNA ligase LigA [Streptomyces griseoaurantiacus M045] Length = 731 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 217/763 (28%), Positives = 352/763 (46%), Gaps = 69/763 (9%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K+ Q + QAR+ L ++I H YY P++ D+E+D L R + Sbjct: 5 KQAQTTAV----PAQARERHVRLAEQIEEHRFRYYVKDAPVVSDAEFDRLLRELQELEER 60 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 P+L P+ P K+ G V H LSL+ +N EDL + RI R + Sbjct: 61 HPEL---RTPDSPTQKVAGAYETEFTSVRHRERMLSLDNTFNDEDLAAWTERIARELGSQ 117 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 + F E K+DG + + YE G+ AA RGDG +GED++ +R I IP L Sbjct: 118 TYH---FLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLHGEE 174 Query: 182 -PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P+++E+RGEV+ F LN ++ G KP+ANPRNAA+G LR+ +P +R L+ Sbjct: 175 VPDVVEIRGEVFFPMEKFQELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTASRPLHMV 234 Query: 240 VHGLGKTSEIFAKGQYEM-LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 VHG+G + + G P + R G+ + R ++ ++ Sbjct: 235 VHGIGALEGFEGMSRLSQAYDLLGSWGLPTSPYNRVVEDLAGVREFIAHYGENRHSVAHE 294 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG V K+DE LQ +LG +R+PRW I++K+A ++ +TRL++I + +GRTG +TP A++ Sbjct: 295 IDGAVVKLDEIPLQGRLGSTSRAPRWAIAYKYAPEEVNTRLVNIRVGVGRTGRVTPYAQV 354 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV + G+ + ATLHN+D +K + + +GD V++++AG+VIP+++ + Sbjct: 355 EPVTVAGSEVEFATLHNQDVVK-----------AKGVLIGDMVVLRKAGDVIPEILGPVA 403 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R + F P+ CP C + + + RC AC AQ ERL + R Sbjct: 404 DLRDGSEREFVMPADCPECGTPLRPM-----KEGDVDLRCPNSRACPAQLRERLFYLAGR 458 Query: 479 DAFNIEGLGKQQLDFFFKSEDPA-FSIRIPADIFTLQRRQQTSTTKI------------- 524 + +IE G + +PA + D+F L Q Sbjct: 459 KSLDIEHFGYVAAAALTRPLEPAEPPLTDEGDLFDLTMEQLLPIKAYVLDQDSGLPKRDP 518 Query: 525 -----------ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 N G + ++ ++I + L R + L IRHVG A +LA+ Sbjct: 519 RTGEEKIATVFANQQGEPRKNAVSMLENIAAAKERPLARVLTGLSIRHVGPVAAEALARE 578 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + S +A VG IIA ++ +++ + + Sbjct: 579 FRSVDRIEAASEEELAATE----------GVGPIIAASLKQWFAEDWHREILRKWKAAGV 628 Query: 634 PSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 E +E +V TGTL+ R A+E + GA V+ +S+KT ++VG Sbjct: 629 RMEEESTGEDEGPRPLEGLTVVVTGTLEHHTRDGAKEALQSRGAKVTGSVSKKTSFVVVG 688 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ---QYNTTLRIHDDD 731 D+PGSK +KA QL V ++NE+ F LL+ + + + ++ Sbjct: 689 DSPGSKYDKAMQLKVPVLNEDGFAVLLESGPEAAAEVALPTEE 731 >gi|295111571|emb|CBL28321.1| DNA ligase, NAD-dependent [Synergistetes bacterium SGP1] Length = 683 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 224/713 (31%), Positives = 352/713 (49%), Gaps = 65/713 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ L +E+++H YY P I D+EYDAL R + A PD R P+ P + Sbjct: 18 AARMAELYEELAHHARLYYDEDAPEIPDAEYDALVRELAELERAHPDRVR---PDSPTRR 74 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + KV H P LSL+ +++ +L F+ RI ++ FT E KIDG Sbjct: 75 VGGTVLEGFEKVRHERPMLSLDNVFSAGELSSFLERIR---GDVPEDDWTFTCEMKIDGL 131 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +++ YE G+FV A RGDG GEDV+ +R + T+P L +EVRGEV ++ + Sbjct: 132 AVSLLYEDGRFVRGATRGDGRVGEDVTENLRTLRTLPMRLKGAPAGRVEVRGEVLMTWDR 191 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256 F ALN+ +G P+ANPRNAA+G +R+L+ R L+ F++ L + Q + Sbjct: 192 FNALNERREELGEPPFANPRNAAAGTMRQLDSRIVAERGLDAFLYYLVDAPSLGVTRQGD 251 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ + G P+ R+ + ++ E + R +LPY DG V K+D+ +L LG Sbjct: 252 ALEWLAERGLPIQPAWRRCASLAEAEAFIVEWQERRFSLPYVTDGAVVKLDDLTLWDGLG 311 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A +PRW +++K+ ++A TR+L ID+ +GRTG LTPVA LEPV + G ++ A LHNE Sbjct: 312 ATAHAPRWAVAYKYPPEEARTRILSIDVSVGRTGALTPVANLEPVRLAGTVVQRAGLHNE 371 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ D + ++A E+IP+VV + R +PF P CP Sbjct: 372 DEIRRKDVRVGDVVRV-----------RKAAEIIPEVVAVEKECRTGAERPFEMPERCPA 420 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S VR + A RC +C AQ E L++F SR +I GLG++ + Sbjct: 421 CGSEAVRLPDE------AVLRCPNRASCPAQLKEGLRYFASRAGLDIRGLGERLAEQLID 474 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 S ++ +D++ L S + G+ S NL ++ ++ L I + Sbjct: 475 S----GRVKTLSDVYDLPEEDWAS------LDRMGEKSARNLMGALEASKDRPLSALIAA 524 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG +A LA+ + S + + V VG +IA ++ F+ Sbjct: 525 LGIRFVGRRVAELLAERFGSMDALSAASEA----------EIADVEGVGPVIASSVEAFF 574 Query: 617 QNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 ++ N+ VE L + ++ S G + +E+E K VFTG L ++R +A+ V Sbjct: 575 RDEANLALVERLRERGLNFSSGDAAGHEGTELEGKSFVFTGELSSMKRAEAEALVRAH-- 632 Query: 676 VVSAILSR----------KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 KT ++ G GSK +A++LGV I++EE FL ++ Sbjct: 633 --------GGSASGSVSSKTSFLVAGAGGGSKRRRAEELGVPIVSEEDFLRMI 677 >gi|322385709|ref|ZP_08059353.1| NAD-dependent DNA ligase LigA [Streptococcus cristatus ATCC 51100] gi|321270447|gb|EFX53363.1| NAD-dependent DNA ligase LigA [Streptococcus cristatus ATCC 51100] Length = 652 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 220/701 (31%), Positives = 360/701 (51%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ +S L + ++ + YY +P + DSEYD L R + +P P+ P ++ Sbjct: 2 KERMSELVKLLNRYAHEYYTADRPSVSDSEYDRLYRELVELEEKYP---TDILPDSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ K H P SL+ ++ E+L F RI + + + + E KIDG Sbjct: 59 VGGKILEGFEKYPHQYPLFSLQDAFSREELMAFDQRIRK-----EFPQVSYICELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YEKG V A RGDG GE+++ ++ + IP L + I VRGE Y+ K Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N G +ANPRNAA+G LR+L+ + N + S A Q E+ Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQAGSQEEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L K+ L F VN A++ G+ + ++ R +L Y+IDG+V KV++ ++Q++LG Sbjct: 231 LNKLASLDFSVNPIHFLADSIDGVWEFIEKIAQERDSLSYEIDGIVIKVNDLAVQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR D V+V +AG++IP V+ ++ ++R + PS CP C Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEAL-EIPSHCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKVFDK 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 ++ A I+ L + + GF + S LY++I + S E+ +F L Sbjct: 452 N----LVKDVAGIYRLSVEDLLT------LDGFKEKSANKLYNAIQASKENSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ +R L + + +Q + + +G +IAQ++ +++ Sbjct: 502 GIRHVGSKASRILMEKFHDMIKLSQASQ----------EEISSIDSLGTVIAQSLHSYFE 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + L + + + + K +V TG LQK+ R++A+E + LGA Sbjct: 552 QEGSQLLLRELQEAGVNLDYLGEKVAADAALAGKTVVLTGKLQKLTRNQAKEKLLSLGAN 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTD+++ G + GSKL KAQ+LG++I +E+ L Sbjct: 612 VAGSVSKKTDLVVAGTDAGSKLTKAQELGIEIRDEDWLDSL 652 >gi|332200505|gb|EGJ14577.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA41317] Length = 648 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 212/698 (30%), Positives = 355/698 (50%), Gaps = 51/698 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 ++ L ++ + YY P + DSEYD L R + A+P+ + + P +++GG Sbjct: 1 MNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRVGG 57 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 ++ K +H P SL+ ++ E+L F R+ + + E KIDG I+ Sbjct: 58 KVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLSIS 112 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + YEKG V RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 113 LTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASFDQ 170 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260 +N G +ANPRNAA+G LR+L+ + N + S Q + L+ Sbjct: 171 VNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGLKY 229 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 + LGF VN A I ++ E+ R LPYDIDG+V KV++ + Q++LG + Sbjct: 230 LEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVK 289 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 +P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 290 APKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI- 348 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S Sbjct: 349 ----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCNSD 397 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 ++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 398 LLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----A 446 Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560 A ++ ADI+ LQ + G + S LY +I + S E+ +F LGIR Sbjct: 447 ANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIR 500 Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 HVG+++++ L +Y+ S +N +Q D + + +G +IA+++ ++ Sbjct: 501 HVGSKVSQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFATEG 550 Query: 621 NICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 + + L + + + + +V TG L++++R +A+ + LGA V+ Sbjct: 551 SEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTG 610 Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +S+KTD+++VG + GSKL+KAQ+LG+++ +E L Sbjct: 611 SISKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 648 >gi|87123447|ref|ZP_01079298.1| BRCT domain:NAD-dependent DNA ligase N-terminus [Synechococcus sp. RS9917] gi|86169167|gb|EAQ70423.1| BRCT domain:NAD-dependent DNA ligase N-terminus [Synechococcus sp. RS9917] Length = 694 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 213/724 (29%), Positives = 339/724 (46%), Gaps = 61/724 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L ++ YY P + D YD L R + A P L P+ P ++ Sbjct: 7 ERARELRTLLNRAAHAYYVLDAPEMEDPVYDRLYRELVELEQADPSLC---SPDSPTQRV 63 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----NSIFFTLEPK 133 GG V H I LSL+ +NI +L + R+ R ++ ++ E K Sbjct: 64 GGPPAAGFQSVRHRIGLLSLDNAFNIGELEAWYARLLRVLDREPGAGAPLPALPMVGELK 123 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVY 192 IDG + + YE+G V AA RGDG GE ++A +R I +P L PE +EVRGE + Sbjct: 124 IDGNALALSYEQGVLVRAATRGDGEQGEAITANVRTIGAVPLRLQLEQPPEWLEVRGEAF 183 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL-------- 243 I F A+N E A G +ANPRNA +G LR+L+P R L+FF + L Sbjct: 184 IPDGTFSAINAEREARGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPEGWQA 243 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G Q+E LQ ++ GF VN + + ++ + + R LPY DG+V Sbjct: 244 GAGDPARPSSQWESLQWLKRAGFKVNPNAELLPSLAAVEGFFAQWQEGRKALPYATDGVV 303 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 K+++ LQ G ++PRW I+ K+ ++A ++LL + Q+GRTG++TPVA E V + Sbjct: 304 VKLNDLRLQDAAGFTQKAPRWAIALKYPAEEAPSKLLRLTCQVGRTGVVTPVAEFEAVPL 363 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G ++ ATLHN D + L D+ D ++V++AGE+IP+VV ++ R Sbjct: 364 AGTSVSRATLHNADRLAEL-----------DLHADDTIVVRKAGEIIPEVVRVLTELRPA 412 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 +A P CP C S +VR+ AA RC +C A L+H+VS+ A ++ Sbjct: 413 NAARLELPHTCPECGSELVREEGE------AATRCVNS-SCPAILRGALRHWVSKGALDV 465 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +GLG + ++ + AD++ L S + G S NL ++ Sbjct: 466 DGLGSKLIEQLVDR----GLVSSIADLYRLDGALLAS------LERMGQKSADNLVAALA 515 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + R ++ LGI HVG A++ ++ A D ++ V Sbjct: 516 ASKAQPWHRQLYGLGIHHVGEVNAKA-------LAAAFPSAADLAAAAADHADAITAVFG 568 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--------NVSSEIENKKLVFT 655 +G IAQ++ +++ N+ + L + E+ S+++ + V T Sbjct: 569 IGAEIAQSLQQWFATAANLNLLAELERLGFSLSSSEEELQAAAERSAASAQLSGQTFVLT 628 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL + R +A+E + G VS +S+KT ++ G+ GSKL KA+ LGV +++E Sbjct: 629 GTLPSLSRSQAKELIEAAGGKVSGSVSKKTSYVVAGEEAGSKLSKAESLGVPVLDEAGLQ 688 Query: 716 FLLQ 719 LL Sbjct: 689 ALLA 692 >gi|327541957|gb|EGF28460.1| NAD-dependent DNA ligase LigA [Rhodopirellula baltica WH47] Length = 754 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 221/727 (30%), Positives = 365/727 (50%), Gaps = 64/727 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + + L EI+ H+ YY + P I D +YD L + + +P+L P+ P Sbjct: 58 DSIASRVQQLVDEINRHNRLYYDDAAPEITDLQYDQLLAELTQLENEYPEL---RQPDSP 114 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +GG++ L +V H +P LS++ ++ E+L + RI + + S+ +T+E KI Sbjct: 115 TQLVGGDVVDQLVQVPHRVPMLSIDNTYSREELAAAMERIEKSL---EGESVAWTMEYKI 171 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-----------SLNIPE 183 DG +IRYE G+ A RG+G G+D++ +R I +PR + N+PE Sbjct: 172 DGVAGSIRYENGELTLALTRGNGQVGDDITHNVRTIRELPRSIADAALAHPEVADGNVPE 231 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHG 242 ++EVRGE+Y++ D LN G +P+ N RN +G +R L+P +R + FF HG Sbjct: 232 VLEVRGELYMTDADLADLNVRQTEAGHEPFKNTRNVTAGTIRLLDPKIAASRNIRFFCHG 291 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G+ + A L+ ++ LG P+ V + + +++ LP++IDG+ Sbjct: 292 SGELVGVQASDHMTFLEHVQALGIPIAPDVVRFENKENALQAIAKLELEMPDLPFEIDGI 351 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V+KVD F +++LG R++SPRW+I++KF +A T L ID+Q+G+TG +TPVA L PV+ Sbjct: 352 VFKVDSFEQREKLGVRSKSPRWVIAYKFERYEAITTLEAIDVQVGKTGTITPVAYLTPVD 411 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 I ++ A+LHN D I+ L D+RVGD V+V++AG++IPKVV + + R Sbjct: 412 IADTTVSRASLHNADEIERL-----------DVRVGDTVVVEKAGKIIPKVVRVEKHART 460 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 F FP+ CP C + RD RCT AC AQ +RL +F SR + Sbjct: 461 KPLPKFEFPTHCPQCDEVLTRDEG------GVYIRCTNP-ACPAQLRQRLVYFGSRTGMD 513 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ---------RRQQTSTTKIENILGFGDV 533 I+GLG++ +D + E + AD++ L R + + FG Sbjct: 514 IDGLGEEVVDLLLQKE----LVENYADLYRLNVDELAELTWPRLRKGKGDEMIEVQFGRK 569 Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593 + +L IN+ R L R + S+ IRH+G +A+ + + + Sbjct: 570 NAESLVAGINESRTRGLARVLSSISIRHIGPRVAKLITAKFWNLDLLRSA---------- 619 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-----KNVSSEIE 648 L + +GD IA+++V+F + + L + + + Sbjct: 620 KAEDLAAIHEIGDRIAESLVKFIHSESGSQTLSDLDAVGVTMSEPEPVATPDEEANLPLA 679 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTLQ R + + + +LG ++ +S+KTD +I G+ GSKL KA+ LGV++ Sbjct: 680 GKNIVATGTLQHYTRDEIKARIEELGGRAASSVSKKTDFLIAGEKAGSKLTKAESLGVEV 739 Query: 709 MNEEQFL 715 ++E+ F Sbjct: 740 LSEDDFR 746 >gi|153956079|ref|YP_001396844.1| LigA1 [Clostridium kluyveri DSM 555] gi|219856414|ref|YP_002473536.1| hypothetical protein CKR_3071 [Clostridium kluyveri NBRC 12016] gi|190359246|sp|A5N2X7|DNLJ_CLOK5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781297|sp|B9DWM9|DNLJ_CLOK1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146348937|gb|EDK35473.1| LigA1 [Clostridium kluyveri DSM 555] gi|219570138|dbj|BAH08122.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 663 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 210/706 (29%), Positives = 357/706 (50%), Gaps = 46/706 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +K + L + I YH+D YY P I D EYD L + ++ P+ + P Sbjct: 2 DIKKRIDELRKIIEYHNDKYYNQDDPEITDYEYDKLYVELRNLENSHPEYKIQ---SSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+GG + L KV H IP +SL+ +++ E++ F+ +I F +E KID Sbjct: 59 QKVGGTVKRELRKVKHDIPVVSLQDVFSKEEVYSFVEKITSEVTYPK-----FVVEKKID 113 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + +RY G+ A RGDG GE V I + +IP+ + + + E+RGE+Y++ Sbjct: 114 GLTVVLRYYNGELKEAITRGDGSIGESVFENILQVKSIPKHIPSKLNYL-EIRGEIYMTN 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQ 254 +F+ +N++ +G K + NPRN A+G +R+L+ + R L+ F+ L + + Sbjct: 173 ENFIKVNEKQEEIGGKIFKNPRNLAAGTIRQLDTSIVKDRNLDIFIFNLEISEGKKFETH 232 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L+ + GF V+ + T + + +++ R L Y IDG V KVD + + Sbjct: 233 SETLEWLSNQGFDVSPNFKICETADEVWNAILDIEESRWDLGYSIDGAVVKVDNLNDRIS 292 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++ P+W ++ K+ +Q T + DI +Q+ RTG L P+A L PV + I+ ATLH Sbjct: 293 LGMTSKVPKWTVAFKYPPEQKETVIEDIIVQVSRTGRLNPLALLRPVILANTTISKATLH 352 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N+D+I +DIR+GD V++++AG++IP+++ I +R A+ + P C Sbjct: 353 NQDFIDS-----------KDIRIGDTVIIQKAGDIIPEIIRSIPEKRPDWAKKYIIPDVC 401 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S+ +R+ + RC+ C AQ ++ +FVS+DA NI G G+ ++ Sbjct: 402 PVCNSKTIREPD------GVDTRCSNP-DCEAQSFRKIGYFVSKDAMNIVGFGQNTVEAL 454 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 K I+ +DI+ L+ + K + SV NL ++I ++ ++R I Sbjct: 455 MKD----GYIKKISDIYILKNYKDALIEKGII---GKEKSVNNLLNAIELSKDNDIDRLI 507 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 LGIR+VG + A+ LA + S A + LI + G I+E Sbjct: 508 TGLGIRNVGKQSAKILAGNFKSMDELAGA----------AYEQLIELEDFGPTTVPDILE 557 Query: 615 FYQNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+ + I ++ L + +I + +K + + K V TGTL ++R +A E + Sbjct: 558 FFNSNAYIELIKKLKEAGVNTISKTLQKKIDNRFLGKTFVITGTLPTMKRDEAAEIIQSF 617 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G VS +S++T ++ G+ GSKL KAQQLG+ I+ EE +++ Sbjct: 618 GGKVSGSVSKRTSFVLAGEEAGSKLTKAQQLGISIITEEDLKDMIK 663 >gi|187251632|ref|YP_001876114.1| DNA ligase, NAD-dependent [Elusimicrobium minutum Pei191] gi|254781329|sp|B2KE31|DNLJ_ELUMP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|186971792|gb|ACC98777.1| DNA ligase, NAD-dependent [Elusimicrobium minutum Pei191] Length = 656 Score = 492 bits (1265), Expect = e-136, Method: Composition-based stats. Identities = 235/707 (33%), Positives = 357/707 (50%), Gaps = 52/707 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ +KE+ L +I+YH++ YY I D+EYD L R + PD A D Sbjct: 1 MDKIKKEIEDLRSKINYHNNLYYNLDNAEISDAEYDGLYARLKFLEAMNPDYA---DAAS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P KIGG + VTH+ +SL+ ++ E++ ++ R + + E K Sbjct: 58 PTQKIGGAASRVFTSVTHASQMMSLDNTYSSEEVLRWHERCVKSLG---HGNFEMVAEAK 114 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++ YE G AA RGDG +GEDV+A I+ I TIP ++ IE+RGE+YI Sbjct: 115 IDGVSCSLTYEGGVLTVAATRGDGKTGEDVTANIKTIKTIPHN--ISFKNKIEIRGEIYI 172 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAK 252 K D LN+ G +AN RNAA+G +R+ N +R L FF H G + K Sbjct: 173 EKADLKRLNEIQENEGENIFANTRNAAAGSIRQKNAEISASRPLKFFAHSFGYGD-VDVK 231 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 G E + + GF V + + I S+Y + +R+ LPYD+DG+V K++ F+ Q Sbjct: 232 GFAEFMDLCKSWGFSVTPNRIRTADINEITSFYKRFEELRAGLPYDVDGIVVKINSFAEQ 291 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 K LG A+SPRW I+ K+ Q T + I +GRTGI+TPVA LEPV + G +I+NAT Sbjct: 292 KILGVTAKSPRWAIAFKYKPPQGKTVVNKIIFSVGRTGIITPVAELEPVAVAGVIISNAT 351 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D IK L ++ GD V+V+RAGEVIPK++++ + P Sbjct: 352 LHNFDEIKRL-----------GVKEGDTVIVERAGEVIPKILNV---VKDGGGNEVKAPK 397 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S+V R + A RC AC AQ L HFVSR A +I+G G+ ++ Sbjct: 398 NCPSCGSKVYRYEDE------VAIRCINP-ACPAQIKGHLLHFVSRAAMDIDGFGEAVVE 450 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + + ++ ADI+ L+ Q + + F D V NL ++ + SL R Sbjct: 451 QVVEKK----YVKDFADIYNLKAEQLLT------LDLFKDKKVNNLLLAVEASKKRSLSR 500 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +++ GIRHVG + LA ++ +N ++ +G ++ Q++ Sbjct: 501 VLYAFGIRHVGQKTGEILANHFEDIENMLAA----------SLEDFQKINEIGPVVGQSV 550 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 +F Q+ + + L + +E+ K LVFTG L + R +A+ Sbjct: 551 YDFMQSAKGKEEIARLKTAGVNFTQPKVQLAGNELLGKTLVFTGEL-NMPRTQAEALAKA 609 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G VS +S KT ++ G + GSKL KAQ LGV +++EE+FL L++ Sbjct: 610 HGGKVSGSVSSKTSYVVAGADAGSKLTKAQSLGVSVISEEEFLNLIK 656 >gi|111658008|ref|ZP_01408712.1| hypothetical protein SpneT_02000805 [Streptococcus pneumoniae TIGR4] Length = 648 Score = 492 bits (1265), Expect = e-136, Method: Composition-based stats. Identities = 212/698 (30%), Positives = 355/698 (50%), Gaps = 51/698 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 ++ L ++ + YY P + DSEYD L R + A+P+ + + P +++GG Sbjct: 1 MNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRVGG 57 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 ++ K +H P SL+ ++ E+L F R+ + + E KIDG I+ Sbjct: 58 KVLDGFEKYSHQYPLYSLQDAFSCEELDAFDARVRKEVAHP-----TYICELKIDGLSIS 112 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + YEKG V RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 113 LTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASFDQ 170 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260 +N G +ANPRNAA+G LR+L+ + N + S Q + L+ Sbjct: 171 VNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGLKY 229 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 + LGF VN A I ++ E+ R LPYDIDG+V KV++ + Q++LG + Sbjct: 230 LEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVK 289 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 +P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 290 APKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI- 348 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S Sbjct: 349 ----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCNSD 397 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 ++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 398 LLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----A 446 Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560 A ++ ADI+ LQ + G + S LY +I + S E+ +F LGIR Sbjct: 447 ANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIR 500 Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 HVG+++++ L +Y+ S +N +Q D + + +G +IA+++ ++ Sbjct: 501 HVGSKVSQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFATEG 550 Query: 621 NICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 + + L + + + + +V TG L++++R +A+ + LGA V+ Sbjct: 551 SEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTG 610 Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +S+KTD+++VG + GSKL+KAQ+LG+++ +E L Sbjct: 611 SISKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 648 >gi|167627564|ref|YP_001678064.1| DNA ligase (NAD(+)) [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|190359258|sp|B0TY02|DNLJ_FRAP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|167597565|gb|ABZ87563.1| DNA ligase (NAD(+)) [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 678 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 262/718 (36%), Positives = 397/718 (55%), Gaps = 54/718 (7%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I + L+ Q + + L + + Y+ KP+I DS+YD L R + P L Sbjct: 9 IDYKTLTKAQLKSYIDDLAEYLGEQSYLYHTIDKPVITDSDYDKLFRLLQDLVDDNPQLK 68 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 S N L+++GGE+ + H SL ++++E+LR F +I I Sbjct: 69 PS---NSVLDRVGGEILAGFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDI 117 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEII 185 EPK+DG I+I Y+ GKF YA RGDG GE VS ++ I +P + N PE + Sbjct: 118 ELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEEL 177 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG 244 EVRGE+ + K FL+LN+ M K +ANPRNAA+G +R L+ R L + +G+G Sbjct: 178 EVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIG 237 Query: 245 KT--SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + + Q+E++ ++ GF +++ + A F + Y+++M R+ L YDIDGL Sbjct: 238 YFSKDFVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVEVYHHKMSHQRADLAYDIDGL 297 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V+KV+ LQ +G AR P+W I++KF ++ + +L+++ Q+GRTG +TPVARL+PV Sbjct: 298 VFKVNNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVA 357 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 +GG +++NATLHN + IK +DIRVGDRV+V+RAG+VIP+VV + R Sbjct: 358 VGGVIVSNATLHNINEIKR-----------KDIRVGDRVIVRRAGDVIPEVVKSLPQYRK 406 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 PDAQ P+ CP+C S + + A +RCTGG C AQ ERLKHFVSR A + Sbjct: 407 PDAQMVEMPTNCPVCDSAIENIND------QAIYRCTGGWHCQAQTTERLKHFVSRKAMD 460 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+ LG + ++ A I+ PADI+ L Q T + G S N+ DSI Sbjct: 461 IDKLGAKLIEQLV----AADLIKYPADIYKLNFEQLTG------LERMGAKSSQNVLDSI 510 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 K + SL RFIF++GI+ VG + +LA ++ S ++F + + LI + Sbjct: 511 TKSKEPSLARFIFAIGIKDVGEVSSEALANHFGSLESFREA----------KFEQLIEIN 560 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNV-SSEIENKKLVFTGTLQK 660 +G+IIA+ IV F+Q+ NI V+ LL ++ + + NK +V TGT + Sbjct: 561 DIGEIIAKNIVSFWQDSLNIQIVDELLGNSINIQNPEKIEQAHNESFTNKTIVITGTFEN 620 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R + + + +GA V++ +S+KTD++I GDN GSKL KAQ LGV+++ EE LL Sbjct: 621 YNRTELTQLLKSMGAKVTSSVSKKTDMVICGDNAGSKLTKAQDLGVEVIFEEDLQNLL 678 >gi|313891779|ref|ZP_07825384.1| DNA ligase (NAD+) [Dialister microaerophilus UPII 345-E] gi|313119773|gb|EFR42960.1| DNA ligase (NAD+) [Dialister microaerophilus UPII 345-E] Length = 666 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 226/709 (31%), Positives = 371/709 (52%), Gaps = 46/709 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + ++ L +E+ YH YY KP I D E+D + R +P+L P Sbjct: 1 MITNEIISKVKKLREELRYHSYLYYVLDKPEISDFEFDKMYRELVDFESKYPELI---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG+ KV P LSL +N ++L +F + ++I + E Sbjct: 58 DSPTQRVGGKATGDFKKVEFKKPMLSLSNAFNGKELIEFDKGVKETLN---TDNIEYITE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG + + YE+GK + RGDG GEDV+A ++ I +IP + P I E+RGEV Sbjct: 115 LKIDGLSMNLIYEEGKLIRGLTRGDGKVGEDVTANVKTIKSIPLYIENAPPYI-EIRGEV 173 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 ++ ++ F++LN++ A G P+AN RNAASG +R+L+P +R L+FF + +G+T I Sbjct: 174 FMPRSSFVSLNEKRDAAGIMPFANCRNAASGSIRQLDPNVTASRNLDFFAYSVGETEGIE 233 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K Q +L ++ F VN ++ N+ ++ NE + R L YD DG+V KV++F+ Sbjct: 234 IKNQESLLNLLKKFHFKVNPNYKKINSIEKVIEIINEWQEKRHNLGYDTDGMVVKVNDFA 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q LG ++ P+W I++K+ ++ T + +I + +GRTG+LTP A L+PV I G ++ Sbjct: 294 QQNILGATSKDPKWAIAYKYPPEEEETVVENIIVTMGRTGVLTPSADLKPVQIAGTVVKR 353 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN ++I+ +DIR+GD V + ++GE+IP++ ++ N+R + F Sbjct: 354 ATLHNMNFIE-----------EKDIRIGDIVKIYKSGEIIPEISVVLKNKRTGKEKKFIM 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C+ ++ R A+RC C E L HF SR+A NIEGLG Sbjct: 403 PSECPLCKHKIYRTEGE------VAYRCINP-DCGGVIRENLIHFASRNAMNIEGLGPAV 455 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D I AD + L++ I G+ S NL SI +N L Sbjct: 456 IDGLLAYN----LIENIADFYELRKDDII------QIERMGEKSAKNLLISIENSKNRGL 505 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +F+F+LGIRH+G + + +++ + S+ V +G+I A+ Sbjct: 506 SKFLFALGIRHLGEKGSELISEKFKDIDVLMNA----------SVDSIKSVSGIGNITAE 555 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I ++++N +N +E L K+ + + +V TG L I R +A E + Sbjct: 556 HIYKYFKNEKNKKIIERLKDHGILMKLNERKSEGNAFKGHNVVLTGKLSNIGRREAGEII 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LG + + +++ T ++IVG+N GSKLEKA++ G+KI+NE FL ++ Sbjct: 616 KALGGNLQSTVTKTTTLVIVGENAGSKLEKAREKGIKIINENDFLKIIN 664 >gi|329116783|ref|ZP_08245500.1| DNA ligase (NAD+) [Streptococcus parauberis NCFD 2020] gi|326907188|gb|EGE54102.1| DNA ligase (NAD+) [Streptococcus parauberis NCFD 2020] Length = 654 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 209/701 (29%), Positives = 353/701 (50%), Gaps = 50/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 K + L ++ + YY P + D +YD L + +P+ A + P Sbjct: 2 EKRIKELTDLLNQYRLEYYTNDSPSVSDQDYDRLYHELVQLEEEYPEYALK---DSPTQA 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H+ P SL+ ++ E+L F R+ + S + E KIDG Sbjct: 59 VGGLVLTGFEKYQHAYPLYSLQDAFSPEELYSFDRRVK-----AEFPSAEYVAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y++GK V A RGDG GE+++ I+ I IP L I I VRGE Y+S+ Sbjct: 114 SISLNYQEGKLVTGATRGDGSIGENITENIKRIKDIPHQLDQAI--DITVRGEAYMSRKS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N E G +ANPRNAA+G LR+L+ + + + S Q + Sbjct: 172 FQQINLERQENGETEFANPRNAAAGTLRQLDTSIV-AKRELASFLYQEASPTDELSQELV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+K+ LGF VN + I + ++ R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LEKLDNLGFSVNPRRLITQSMDEIWDFIQAIEIERDQLSYDIDGIVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW +++KF ++ + +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TIKAPRWAVAYKFQAEEKEAEIRSVDWTVGRTGVVTPTANLTPVKLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI+ +DIR+GD V+V +AG++IP V+ ++ ++R D++P PS CP C Sbjct: 351 YIE-----------HKDIRIGDTVIVYKAGDIIPAVLRVVTDKRRDDSEPMPIPSLCPSC 399 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 QS ++ + A RC L C L+HF SR+A NI GLG ++ + Sbjct: 400 QSELIHFEDE------VALRCINPL-CPNLIQRSLEHFASRNAMNISGLGPAIVEKLYS- 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A I ADI+ L Q + + G + S L +I + S ++ +F L Sbjct: 452 ---ANLIHDVADIYKLNLEQLLA------LEGIKEKSAEKLLTAITNSKKNSADKLLFGL 502 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVGA+ +R L + + ++ + + + ++ +G +IA++I +++ Sbjct: 503 GIRHVGAKASRILLEEFGDIESLVEA----------NQEEISQIDGLGTVIAKSIARYFE 552 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + L + + ++++ +V TG L+++ R++A+ + LGA Sbjct: 553 KAEAQLLLSELKSAGLNLSYLGKKIDKTAKLFGMTVVLTGKLEQLTRNEAKAKLESLGAK 612 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V++ +S+KTD+++ G + GSKL+KA LG++I +E+ + L Sbjct: 613 VTSSVSKKTDLLVAGSDAGSKLDKASTLGIRIEDEDWLVNL 653 >gi|222152820|ref|YP_002561997.1| NAD-dependent DNA ligase LigA [Streptococcus uberis 0140J] gi|254781430|sp|B9DRS2|DNLJ_STRU0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|222113633|emb|CAR41520.1| DNA ligase [Streptococcus uberis 0140J] Length = 652 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 217/701 (30%), Positives = 355/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 K + L ++ + YY P + D EYD L + +P+ + + P Sbjct: 2 EKRIRELTSLLNQYRQEYYTNDNPSVSDQEYDKLYHELIDLEKEYPEYIQK---DSPSQA 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ + + E KIDG Sbjct: 59 VGGLILSGFEKYQHPFPLYSLQDAFSKEELEAFDRRVK-----SEFPKAEYIAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G+ V A RGDG GE+++ I+ I IP L +I I VRGE Y+S++ Sbjct: 114 SISLSYESGRLVTGATRGDGSVGENITENIKKIKDIPHQLKDDI--TITVRGEAYMSRSS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N E G +ANPRNAA+G LR+L+ + + + S A+ Q ++ Sbjct: 172 FQKINLERQENGETEFANPRNAAAGTLRQLDTSIV-ARRELASFLYQEASPSQAQNQEDV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+ + LGF VN +++ I S+ +++ R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LENLEALGFSVNKKRLISSSMEDIWSFITQVEDERDNLSYDIDGIVIKVNNLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D IGRTG++TP A L P+ + G ++ ATLHN D Sbjct: 291 TIKAPRWAIAYKFPAEEKEAEILSVDWTIGRTGVVTPTANLTPIQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+ ++ +R P P CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVDTKR-DQQLPMPIPKVCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 QS +V A RC L C + L+HF SR+A NI GLG ++ F + Sbjct: 399 QSDLVHLEAE------VALRCINPL-CPSLIQRSLEHFASRNAMNIAGLGPAIVEKLFSA 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + I ADI+ L S + + G + S L D+I ++ S ++ +F L Sbjct: 452 Q----LIHDVADIYQL------SLDSLLTLEGIKEKSAQKLLDAIQSSKSNSADKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVGA+ +R L + + S +N + D S+ ++ +G +IA +I ++ Sbjct: 502 GIRHVGAKASRLLLETFGSVENLMKA----------DDQSIAQIDGLGHVIANSIKNYFA 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + L + + + S+++ +V TG L+++ R +A+E + +GA Sbjct: 552 KEEAKQLIFELKDKGVNLDYLGKKVDTSAQLFGLTVVLTGKLEEMTRQEAKEKLENMGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTD++I G + GSKL+KA+ LG+ + +E L L Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLDKARSLGIDVKDENWLLQL 652 >gi|32476578|ref|NP_869572.1| DNA ligase [Rhodopirellula baltica SH 1] gi|81659473|sp|Q7UKD1|DNLJ_RHOBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|32447124|emb|CAD76950.1| DNA ligase [Rhodopirellula baltica SH 1] Length = 706 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 224/727 (30%), Positives = 365/727 (50%), Gaps = 64/727 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + + L EI+ H+ YY + P I D +YD L + + PDL R P+ P Sbjct: 10 DSIASRVQQLVDEINRHNRLYYDDAAPEITDLQYDQLLAELTQLENDHPDLRR---PDSP 66 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +GG++ L +V H +P LS++ ++ E+L + RI + + S+ +T+E KI Sbjct: 67 TQLVGGDVVDQLVQVPHRVPMLSIDNTYSREELAAAMERIEKSL---EGESVAWTMEYKI 123 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-----------SLNIPE 183 DG +IRYE G+ A RG+G G+D++ +R I +PR + N+PE Sbjct: 124 DGVAGSIRYENGELTLALTRGNGQVGDDITHNVRTIRELPRSIADAALAHPEVAGGNVPE 183 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHG 242 ++EVRGE+Y++ D LN G +P+ N RN +G +R L+P +R + FF HG Sbjct: 184 VLEVRGELYMTDADLADLNVRQTDAGHEPFKNTRNVTAGTIRLLDPKIAASRNIRFFCHG 243 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G+ + A LQ ++ LG P+ V + + +++ LP++IDG+ Sbjct: 244 SGELVGVRASDHMTFLQHVQALGIPIAPDVVRFENKEDALQAIAKLELEMPDLPFEIDGI 303 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V+KVD F +++LG R++SPRW+I++KF +A T L ID+Q+G+TG +TPVA L PV+ Sbjct: 304 VFKVDSFEQREKLGVRSKSPRWVIAYKFERYEAITTLEAIDVQVGKTGTITPVAYLTPVD 363 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 I ++ A+LHN D I+ L D+RVGD V+V++AG++IPKVV + + R Sbjct: 364 IADTTVSRASLHNADEIERL-----------DVRVGDTVVVEKAGKIIPKVVRVEKHART 412 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 F FP+ CP C + RD RCT AC AQ +RL +F SR + Sbjct: 413 KPLPKFEFPTHCPQCDEVLTRDEG------GVYIRCTNP-ACPAQLRQRLVYFGSRTGMD 465 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ---------RRQQTSTTKIENILGFGDV 533 I+GLG++ +D + E + AD++ L R + + FG Sbjct: 466 IDGLGEEVVDLLLQKE----LVENYADLYRLNVDELAELTWPRLRKGKGDEMIEVQFGRK 521 Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593 + +L IN+ R L R + S+ IRH+G +A+ + + + Sbjct: 522 NAESLVAGINESRTRGLARVLSSISIRHIGPRVAKLITAKFWNLDLLRSA---------- 571 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-----KNVSSEIE 648 L + +GD IA+++V+F + + L + + + Sbjct: 572 KAEDLAAIHEIGDRIAESLVKFIHSESGSQTLSDLDAVGVTMSETEPVATPDEEANLPLA 631 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTLQ R + + + +LG ++ +S+KTD +I G+ GSKL KA+ LGV++ Sbjct: 632 GKNIVATGTLQHYTRDEIKARIEELGGRAASSVSKKTDFLIAGEKAGSKLTKAESLGVEV 691 Query: 709 MNEEQFL 715 ++E+ F Sbjct: 692 LSEDDFR 698 >gi|291166519|gb|EFE28565.1| DNA ligase, NAD-dependent [Filifactor alocis ATCC 35896] Length = 668 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 225/715 (31%), Positives = 373/715 (52%), Gaps = 58/715 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 A K++ L + + Y+ YYQ P I D+EYD++ + ++ P L P Sbjct: 2 DAEKKIKLLRERLEYYSAKYYQEDAPEISDAEYDSMMKELMSLEKEHPSL---RSAESPS 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+GG + + H +P LSL ++ E+L +F +I I + +E KID Sbjct: 59 EKVGGSYSKKFAEYVHRVPLLSLSNAFSYEELLEFDQKIRERCG-----DISYCVELKID 113 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+KGKF++ A RG+G GE+V+ + I TIP+ L+ + + VRGEV++ K Sbjct: 114 GLSVALEYKKGKFIHGATRGNGQQGENVTDNLNEIVTIPKELNQKV--DLVVRGEVFLPK 171 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI----- 249 + FL LN++ +G +ANPRNAASG LR+L+ R L+ F+ + + + Sbjct: 172 DRFLKLNEQQEDLGLPLFANPRNAASGSLRQLDSNITKDRNLDIFIFNVQEWMDNSDKEK 231 Query: 250 --FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + L + LGF + + ++ + R L +DIDG+V KVD Sbjct: 232 EQELNSHSKQLNYLDDLGFKTISPREHCESMEKVIEFIKYWTEHREELLFDIDGIVIKVD 291 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E + ++ LG+ A++PRW I++KF +Q T + I +Q+GRTG+LTP+A L PV I G+ Sbjct: 292 ELNKREILGQTAKAPRWAIAYKFPAEQKETTIEAITVQVGRTGVLTPIAELTPVLISGST 351 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHNEDYI +DIRVGDRV+V++AGE+IP+V ++ ++R Sbjct: 352 VSRATLHNEDYIAM-----------KDIRVGDRVIVQKAGEIIPEVHAVMKDKRDGTEVV 400 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P CP C + + K AC AQ R+ HFVS+ A +I+ G Sbjct: 401 FHMPHTCPSCGAATQKIDGEVAVK-------CTNFACPAQLKRRMIHFVSKSAMDIDNFG 453 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + +++ I+ ADI+ L+ + + GF S +NL SIN ++ Sbjct: 454 PSIVSSLYEN----GLIKNIADIYLLKEKDL------LQLNGFAKKSASNLISSINHSKS 503 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L + + +LGI VG + A+ L+K + S + + + L+R+ +G Sbjct: 504 RNLNQLLVALGIDFVGEKAAKVLSKNFSSLEELEKA----------NLDDLMRIEEIGLK 553 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 AQ+I+ ++Q N +E L++ SI ++N S KK V TGTL+ ++R + Sbjct: 554 TAQSILNYFQLEENRAVLERLVEYGVNTKSISGTDQNSSKVFSGKKFVLTGTLEGMKRSE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + G V + +S D ++ GD+PGSKL+KAQ+L + I+ +++FL ++ + Sbjct: 614 AKKIIETCGGEVMSAVSTSVDYLLAGDSPGSKLKKAQELNIPILTKDEFLVMVNE 668 >gi|86131748|ref|ZP_01050345.1| DNA ligase (NAD(+)) [Dokdonia donghaensis MED134] gi|85817570|gb|EAQ38744.1| DNA ligase (NAD(+)) [Dokdonia donghaensis MED134] Length = 664 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 220/709 (31%), Positives = 357/709 (50%), Gaps = 51/709 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++IE+ ++ L QE+ H+ YY P I D E+D + A+ A P +DP Sbjct: 1 MTIEE---QILQLRQELREHNYNYYTLDTPTISDFEFDKKLEQLKALELANPAY---DDP 54 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P +++GG + + + H SL+ ++ EDL + R+ + D + +T E Sbjct: 55 NSPTHRVGGAVTKNFETIVHEHRMYSLDNSYSKEDLEDWEARVKKMV----DGEVHYTCE 110 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG I++ YE G+ + A RGDG G+DV+ I+ I ++P L + P ++RGE+ Sbjct: 111 LKYDGASISLTYENGELLRAVTRGDGLQGDDVTTNIKTIKSVPLKLKGDYPPKFDIRGEI 170 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 + + F A+N E +G + Y NPRN ASG L+ + ++ + + + + Sbjct: 171 VLPWDGFHAMNAEREELGFELYRNPRNTASGSLKLQDSAEVAKRPLQCLLYNITGNNLGI 230 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q E LQK R GF V + A + ++ + N R LPY+ DG+V KV+ Sbjct: 231 TTQIESLQKARDWGFMVPDAAVLAKSIDEVLDFINHWDKARHDLPYETDGVVVKVNGLQQ 290 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG A++PRW +++KF +Q STRL +I Q+GRTG +TPVA LEPV + G + A Sbjct: 291 QEELGYTAKAPRWAMAYKFKAEQVSTRLREITYQVGRTGAITPVANLEPVELAGTTVKRA 350 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHN D I+ L DIR GD V V++ GE+IPK++ + + +R D++P + Sbjct: 351 SLHNADQIERL-----------DIREGDEVFVEKGGEIIPKIIAVDLTKRPADSEPTDYI 399 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C +++VR A H C + C Q + R++H++SR A +I+GLG + + Sbjct: 400 AECPECDTQLVRKEGE------AQHYCPNDMGCPPQIIGRIQHYISRKAMDIDGLGGETV 453 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 I AD++ L Q + + S NL + + I E Sbjct: 454 ALLVNE----GLILNYADLYELTVAQ------LLPLERMAQKSAENLVNGVQASVKIPFE 503 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + +F LGIR+VG +A+ LAK+Y S L+ V +G IA++ Sbjct: 504 KVLFGLGIRYVGETVAKKLAKHYKSIDAIISATE----------EELVAVDEIGIKIAES 553 Query: 612 IVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +V F+ +I +E L N S + K V +G + + R+ ++ Sbjct: 554 VVAFFAKAEHIALIERLRSYGVQLEISAEKLANQSDVLAGKTFVVSGVFE-MPRNDLKKL 612 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717 + G VS+ +S KT ++ G+ G SKLEKAQ+LG+ I++E +FL L Sbjct: 613 IEDNGGKVSSSISSKTSYLVAGEKMGPSKLEKAQKLGITIISEIEFLAL 661 >gi|116490507|ref|YP_810051.1| NAD-dependent DNA ligase [Oenococcus oeni PSU-1] gi|122277306|sp|Q04GN6|DNLJ_OENOB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116091232|gb|ABJ56386.1| NAD-dependent DNA ligase [Oenococcus oeni PSU-1] Length = 684 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 241/722 (33%), Positives = 385/722 (53%), Gaps = 55/722 (7%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 Q PIE L+ QA+ E+ L E++ YY+ P + D YDA R A+ A+P Sbjct: 5 DQFTPIEDLTFTQAQAEIRDLSDELTKWGREYYEEDNPSVEDYVYDAHYARLVALEKAYP 64 Query: 64 DLARSEDPNGPLNKIGGEM-----NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118 LA P+ P + + L KV H +P LSL +++I++L + Sbjct: 65 SLAM---PDSPTQHVAAGNQTKNDSRGLQKVVHPVPMLSLGDVFSIQELLDWD----LVT 117 Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 K + + LE KIDG I++RYE G+ + A+ RGDG GE+V+ ++ I IP+VL+ Sbjct: 118 TKNAGSQQKYNLELKIDGLAISLRYENGRLIQASTRGDGSIGENVTDNVKTITEIPKVLN 177 Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237 + IEVRGE+Y+ K F LN + G+ +ANPRNAA+G LR+L+P R+L+ Sbjct: 178 EPL--TIEVRGEIYMRKEAFADLNQQRDEEGKTIFANPRNAAAGSLRQLDPKITAKRHLS 235 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 F++ + + Q ++L++ R LGFPVN+ + + + Y +E R LPY Sbjct: 236 SFIYYTAQNDVLGVNTQSDVLERFRQLGFPVNSSNKVIDRMTEVKDYIDEYTIKRDNLPY 295 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 IDG+V KV++ ++ +LG + PRW I++KF ++A T + DI +GRTG++TP A Sbjct: 296 GIDGVVVKVNDLDVENELGNTVKIPRWSIAYKFPPEEALTVVRDITWTVGRTGVVTPTAI 355 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 ++PV + G + A+LHN DY++ +D+R+GD V + +AG++IP+V +I Sbjct: 356 MDPVFLAGTKVKRASLHNPDYLQ-----------EKDVRIGDTVTLHKAGDIIPEVGQVI 404 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 + +R DAQ + P +CP C+S++V A RC C AQ E L HF S Sbjct: 405 LKKRPADAQAYPIPVYCPSCKSKLVHVQGE------VALRCINP-ECPAQIKEGLIHFAS 457 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R+A NI+GLG + ++ IR +D++ L Q T+ + F D+S N Sbjct: 458 RNAMNIDGLGPRVVEQLLSKN----LIRKISDLYALTESQLTT------LDKFADLSSKN 507 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L +I++ R S+ER I +LGIR VGA+ A+ LA ++ + +N Sbjct: 508 LIQAIDRSRQNSVERLITALGIRGVGAKAAKVLAAHFKNLRNLQNA----------GAEE 557 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFT 655 + + VG ++A AI +++ + + L V + NK++V T Sbjct: 558 IAEIDGVGQVMADAIRQYFNSESVASLINELENFQVNFDYLTTSTVDEKNYFFNKRIVLT 617 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 G L R + Q ++ + GA VS+ +S KTD++I G + GSKLE+A +LG+K++NE+ F+ Sbjct: 618 GKLIHWTRPQMQAWLEEHGANVSSSVSSKTDLLIAGSDVGSKLERANKLGIKVINEQDFI 677 Query: 716 FL 717 L Sbjct: 678 NL 679 >gi|290889907|ref|ZP_06552994.1| hypothetical protein AWRIB429_0384 [Oenococcus oeni AWRIB429] gi|290480517|gb|EFD89154.1| hypothetical protein AWRIB429_0384 [Oenococcus oeni AWRIB429] Length = 684 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 241/722 (33%), Positives = 385/722 (53%), Gaps = 55/722 (7%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 Q PIE L+ QA+ E+ L E++ YY+ P + D YDA R A+ A+P Sbjct: 5 DQFTPIEDLTFTQAQAEIRDLSDELTKWGREYYEEDNPSVEDYVYDAHYARLVALEKAYP 64 Query: 64 DLARSEDPNGPLNKIGGEM-----NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118 LA P+ P + + L KV H +P LSL +++I++L + Sbjct: 65 SLAM---PDSPTQHVAAGNQTKNDSRGLQKVVHPVPMLSLGDVFSIQELLDWD----LVT 117 Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 K + + LE KIDG I++RYE G+ + A+ RGDG GE+V+ ++ I IP+VL+ Sbjct: 118 TKNAGSQQKYNLELKIDGLAISLRYENGRLIQASTRGDGSIGENVTDNVKTITEIPKVLN 177 Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237 + IEVRGE+Y+ K F LN + G+ +ANPRNAA+G LR+L+P R+L+ Sbjct: 178 EPL--TIEVRGEIYMRKEAFADLNRQRDEEGKTIFANPRNAAAGSLRQLDPKITAKRHLS 235 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 F++ + + Q ++L++ R LGFPVN+ + + + Y +E R LPY Sbjct: 236 SFIYYTAQNDVLGVNTQSDVLERFRQLGFPVNSSNKVIDRMTEVKDYIDEYTIKRDNLPY 295 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 IDG+V KV++ ++ +LG + PRW I++KF ++A T + DI +GRTG++TP A Sbjct: 296 GIDGVVVKVNDLDVENELGNTVKIPRWSIAYKFPPEEALTVVRDITWTVGRTGVVTPTAI 355 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 ++PV + G + A+LHN DY++ +D+R+GD V + +AG++IP+V +I Sbjct: 356 MDPVFLAGTKVKRASLHNPDYLQ-----------EKDVRIGDTVTLHKAGDIIPEVGQVI 404 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 + +R DAQ + P +CP C+S++V A RC C AQ E L HF S Sbjct: 405 LKKRPADAQAYPIPVYCPSCKSKLVHVQGE------VALRCINP-ECPAQIKEGLIHFAS 457 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R+A NI+GLG + ++ IR +D++ L Q T+ + F D+S N Sbjct: 458 RNAMNIDGLGPRVVEQLLSKN----LIRKISDLYALTESQLTT------LDKFADLSSKN 507 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L +I++ R S+ER I +LGIR VGA+ A+ LA ++ + +N Sbjct: 508 LIQAIDRSRQNSVERLITALGIRGVGAKAAKVLAAHFKNLRNLQNA----------GAEE 557 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFT 655 + + VG ++A AI +++ + + L V + NK++V T Sbjct: 558 IAEIDGVGQVMADAIRQYFNSESVASLINELENFQVNFDYLTTSTVDEKNYFFNKRIVLT 617 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 G L R + Q ++ + GA VS+ +S KTD++I G + GSKLE+A +LG+K++NE+ F+ Sbjct: 618 GKLIHWTRPQMQAWLEEHGANVSSSVSSKTDLLIAGSDVGSKLERANKLGIKVINEQDFI 677 Query: 716 FL 717 L Sbjct: 678 NL 679 >gi|322368190|ref|ZP_08042759.1| NAD-dependent DNA ligase LigA [Haladaptatus paucihalophilus DX253] gi|320552206|gb|EFW93851.1| NAD-dependent DNA ligase LigA [Haladaptatus paucihalophilus DX253] Length = 685 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 236/720 (32%), Positives = 358/720 (49%), Gaps = 55/720 (7%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 P+ + A ++ L + I +HD YY + P I D YDAL R + AF Sbjct: 19 FEPVAEMDEAGASEQAELLREAIRHHDYRYYVENDPRIGDRTYDALFTRLQELEEAFD-- 76 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 + P+ P ++GGE L V H P LS++ ED+R F RI+R + Sbjct: 77 --VQTPDSPTRRVGGEPLDELESVEHVAPMLSIDSSGEAEDVRGFDDRIHR-----EVGD 129 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + + +PK DG + + YE G+FV AA RGDG +GEDV+ +R I +IP L + P+ + Sbjct: 130 VEYVCDPKFDGLSLEVVYEDGEFVRAATRGDGETGEDVTENVRTIASIPHHLRGDYPDYL 189 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245 VRGEVY+ + F N E + G P+ANPRNAA+G LR+L+P+ Sbjct: 190 AVRGEVYLPLDAFTEFNRERVEQGEDPFANPRNAAAGSLRQLDPSVTAERPLDCFFYDVL 249 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + + + + G VN+ + + + Y +E+ + R+ L Y+IDG V K Sbjct: 250 AASEEFPTHWSEYEALPEFGLKVNDRTERVDDIEDCIEYRDELMADRADLNYEIDGTVIK 309 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ +LG ARS RW ++KF + T ++D+ +Q+GRTG LTPVA LEPV++GG Sbjct: 310 VNDREKCAELGTTARSYRWAYAYKFPARSERTSIMDVTVQVGRTGRLTPVALLEPVDVGG 369 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ A+LHN D I +DI VGD V VKRAG+VIP V +++ Sbjct: 370 VTVSRASLHNPDEI-----------AEKDINVGDEVQVKRAGDVIPYVSEVVEKH---SE 415 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + P CP+C S V + CTGGLAC+AQ + + ++ S D +I+G Sbjct: 416 GHYELPDRCPVCGSPV--------ERDGPIAYCTGGLACTAQLRQAVAYYGSDDGLDIDG 467 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG+++++ + +L + ++ + G+G+ S NL I K Sbjct: 468 LGEERVNQLIDAGLL----------ESLPDLYELDEKELLELEGWGEKSAENLLAEIEKS 517 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + SL F+ ++GI VG E AR LA+ + S + D L VP +G Sbjct: 518 KRPSLADFLSAIGIPRVGTETARELARTFESMDDVMNA----------DSDELEAVPDIG 567 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +A I EF+ + RN VE LLK V P R E E+ + VFTG+L + R Sbjct: 568 PKVAAGIREFFDSERNRSVVEQLLKHVEP--EREEVAGGDELADLTFVFTGSLSE-PRSD 624 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 E V GA + +S TD ++VG+NPG SK A + V I++E++F LL++ Sbjct: 625 ISELVENHGANATGSVSGNTDYLVVGENPGESKPNDADENDVPILSEDEFWNLLEEAGID 684 >gi|311113170|ref|YP_003984392.1| NAD-dependent DNA ligase LigA [Rothia dentocariosa ATCC 17931] gi|310944664|gb|ADP40958.1| NAD-dependent DNA ligase LigA [Rothia dentocariosa ATCC 17931] Length = 740 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 221/754 (29%), Positives = 363/754 (48%), Gaps = 79/754 (10%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + R E + L I YYQ P + D+EYD L RR + I +P L + + P Sbjct: 27 DTIRAEYAELTDTIRTARHDYYQEDAPTLSDAEYDRLYRRLEQIEAQYPALIAN---DSP 83 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GGE++ + VTH + SLE ++++E+LR ++T+ + + + E KI Sbjct: 84 TQEVGGEVSEAFSPVTHLVRMYSLEDVFSLEELRAWLTKAEENTRLLTGTAPQWLTELKI 143 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193 DG + + Y G V AA RGDG +GEDV+ +R I +IP+ L+ N P +EVRGEV+I Sbjct: 144 DGLAVNLLYRNGVLVRAATRGDGTTGEDVTHNVRTIASIPQKLAGENHPAELEVRGEVFI 203 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 S DF LN++M++ G+ P+ANPRNAA+G LR+ + R L+ +VHG+G + + Sbjct: 204 SSADFKKLNEKMVSEGKNPFANPRNAAAGSLRQKDSAVTAERPLSMYVHGVGSRTGLDVN 263 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 QY+ +++ G P + + + I+ Y E R +L ++IDG+V KV++F Q Sbjct: 264 SQYQTYEQLAAWGLPTSPYSKLFTSVDDILRYIAEYGEKRHSLVHEIDGIVIKVNDFVAQ 323 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 QLG +R PRW +++K+ ++ +T+LLDI + +GRTG +TP +EPV + G+ + AT Sbjct: 324 TQLGYTSRVPRWAVAYKYPPEEVNTKLLDIRVDVGRTGRVTPYGVMEPVLVSGSTVERAT 383 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN+D +K + + +GD V++++AG+VIP++V +V R+ + F P+ Sbjct: 384 LHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEIVGPVVALRNGHEREFVMPT 432 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + + + RC +C AQ ER+ + SR AF+IE LG + Sbjct: 433 ECPSCGTTLA-----PGKEGDVDMRCPNYRSCPAQLTERIYYAASRGAFDIEALGFEAAK 487 Query: 493 FFFKSEDPA-FSIRIPADIFTLQRRQ-------------------------QTSTTKIEN 526 +P + A +F L + Sbjct: 488 ALTAPAEPEQPPLTSEAFLFDLTAEDLRDVKIRREKKVKGVGTGKFELVPYFYTKPTKAK 547 Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 + NL+ + K ++ L R + +L IRHVG AR+LA + S AQ Sbjct: 548 PDPVPTKNTQNLFVELEKAKSQPLWRVLVALSIRHVGPTAARALATEFGSMDAIAQA--- 604 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 D L V VG +IA +I+E++ + + + ++ Sbjct: 605 -------DRDRLAAVDGVGGVIADSIIEWFATDWHREVLARWADAGVRMEDERDASIER- 656 Query: 647 IENKKLVFTGTLQ-----------KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695 TL+ R A+E + G S +S+KT ++ G + G Sbjct: 657 ----------TLEGVTVVVTGTLVNYSRDSAKEAIIVRGGRASGSVSKKTHFVVAGASAG 706 Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729 SKL+KA+ LG+ +++E+ F LL L + Sbjct: 707 SKLDKAEALGIPVLDEDGFTKLLAHGPDALAPGE 740 >gi|328946560|gb|EGG40699.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1087] Length = 652 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 219/701 (31%), Positives = 357/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ +S L + ++ + YY +P + DSEYD L R + + + P+ P ++ Sbjct: 2 KERMSELVKLLNRYAHEYYTADRPSVSDSEYDRLYRELVELEEKY---STDILPDSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ K H P SL+ ++ E+L F RI + + + + E KIDG Sbjct: 59 VGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRIRK-----EFPQVSYLCELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YEKG V A RGDG GE+++ ++ + IP L + I VRGE Y+ K Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N G +ANPRNAA+G LR+L+ + N + S Q + Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQVGSQEAV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L K+ L F VN A++ + + ++ R +L Y+IDG+V KV++ ++Q++LG Sbjct: 231 LNKLADLDFSVNPTHILADSIEAVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR D V+V +AG++IP V+ ++ ++R + PS CP C Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEPL-EIPSHCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 ++ A I+ L + + F + S LY +I + S ER +F L Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYTAIQASKENSAERLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ +R L + + +Q + + +G +IAQ++ +++ Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + L +E +K V + + +V TG LQK+ R++A+E + LGA Sbjct: 552 QEGSQILLAELQEEGVNLDYLGQKAVADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 VS +S+KTD+++ G + GSKL KAQ+LG++I +E+ L Sbjct: 612 VSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDEDWLDSL 652 >gi|58038653|ref|YP_190617.1| NAD-dependent DNA ligase [Gluconobacter oxydans 621H] gi|81352629|sp|Q5FUI5|DNLJ_GLUOX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|58001067|gb|AAW59961.1| NAD-dependent DNA ligase [Gluconobacter oxydans 621H] Length = 683 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 273/705 (38%), Positives = 416/705 (59%), Gaps = 34/705 (4%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 A + ++LE +++ D+ Y+ +P + D+ YDA +R A+ A+PDL G Sbjct: 7 SAAERHAALEADLAQWDEAYHGRDEPEVSDAVYDAARRELLALEEAYPDL---RSQEGAS 63 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--SIFFTLEPK 133 ++G + + K H +P LSL+ +++ E F++R+ RF +D ++ F EPK Sbjct: 64 QRVGATPDSAFGKYRHLVPMLSLDNVFDPEGFDGFVSRVGRFLGLDEDGLQALQFVAEPK 123 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I++ YE G FV RGDG GEDV+A + + IPR L PE +E+RGEV++ Sbjct: 124 IDGLSISLTYEHGHFVRGTTRGDGIEGEDVTANLLTLKDIPRELPGEAPERVEIRGEVFL 183 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 SK+ FL LN++ +A G KP+ANPRNAA+G LR+L+ +R L+ F + G TS A Sbjct: 184 SKSSFLTLNEQQVARGAKPFANPRNAAAGSLRQLDAEITRSRPLSLFAYAQGYTSSPVAT 243 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 ++ L+K+R GF VN + I +Y ++ RS L YDIDG+V+K+D+ SLQ Sbjct: 244 THWDYLEKLRSWGFTVNPLSQMIAHARDIPAYVEKLARERSELDYDIDGIVFKLDDLSLQ 303 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG R+PRW I+ KF +QA TRL +I+IQ+GRTG LTPVA LEPVN+GG +++ AT Sbjct: 304 DRLGFAGRAPRWAIAWKFPAEQAITRLREIEIQVGRTGALTPVAHLEPVNVGGVIVSRAT 363 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I +D+RVGD V ++RAG+VIP+++ + +E P ++PF +P Sbjct: 364 LHNEDEIAR-----------KDVRVGDLVRLQRAGDVIPQILGPVPSE-EPRSEPFVYPD 411 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S R A RCTGGL C AQ +ERL H VSR+AF+I+GLG++ + Sbjct: 412 HCPVCGSLAERVHGE------AVRRCTGGLTCEAQIVERLIHMVSRNAFDIDGLGERSIR 465 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F+ A IR P DIF L++ ++ + G+G +SV NL+ +I RR I L R Sbjct: 466 EFYD----AGYIRRPGDIFRLRQHEE----ALLQRDGWGRLSVDNLFRAIEDRRTIPLSR 517 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 IF LGIR +G A+ LA++Y +++N+ + ++++ SL + VGD IA + Sbjct: 518 LIFGLGIRRIGERNAQLLARHYQTFENWRTAMLAARP-DSEERASLGAIMGVGDAIADEL 576 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F+ NI ++ L E+ I E + K +VFTGTL + R +A+ + Sbjct: 577 SAFFSESHNIETLDDLALELKDIIAE-EAPSEGHLSGKVIVFTGTLTTMSRPEAKAIAER 635 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 LGA V+ +S+KT ++++G+ GSK +KA +LG++ ++E + L Sbjct: 636 LGAQVTDSVSKKTSLVVLGEKAGSKAKKAAELGIETVDESGWRVL 680 >gi|300743918|ref|ZP_07072938.1| DNA ligase, NAD-dependent [Rothia dentocariosa M567] gi|300380279|gb|EFJ76842.1| DNA ligase, NAD-dependent [Rothia dentocariosa M567] Length = 740 Score = 490 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 219/744 (29%), Positives = 361/744 (48%), Gaps = 79/744 (10%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + R E + L I YYQ P + D+EYD L RR + I +P L + + P Sbjct: 27 DTIRAEYAELTDTIRAARHDYYQADAPTLSDAEYDRLYRRLEQIEAQYPALIAN---DSP 83 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GGE++ + VTH + SLE ++++E+LR ++T+ + + + E KI Sbjct: 84 TQEVGGEVSEAFSPVTHLVRMYSLEDVFSLEELRAWLTKAEENTRLLTGTAPQWLTELKI 143 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193 DG + + Y G V AA RGDG +GEDV+ +R I +IP+ L+ N P +EVRGEV+I Sbjct: 144 DGLAVNLLYRNGVLVRAATRGDGTTGEDVTHNVRTIASIPQKLAGENHPAELEVRGEVFI 203 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 S DF LN++M++ G+ P+ANPRNAA+G LR+ + R L+ +VHG+G + + Sbjct: 204 SSADFKKLNEKMVSEGKNPFANPRNAAAGSLRQKDSAVTAERPLSMYVHGVGSRTGLDVN 263 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 QY+ +++ G P + + + I+ Y E R +L ++IDG+V KV++F Q Sbjct: 264 SQYQTYEQLAAWGLPTSPYSKLFTSVDDILRYIAEYGEKRHSLVHEIDGIVIKVNDFVAQ 323 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 QLG +R PRW +++K+ ++ +T+LLDI + +GRTG +TP +EPV + G+ + AT Sbjct: 324 TQLGYTSRVPRWAVAYKYPPEEVNTKLLDIRVDVGRTGRVTPYGVMEPVLVSGSTVERAT 383 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN+D +K + + +GD V++++AG+VIP++V +V R+ + F P+ Sbjct: 384 LHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEIVGPVVALRNGHEREFVMPT 432 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + + + RC +C AQ ER+ + SR AF+IE LG + Sbjct: 433 ECPSCGTTLA-----PGKEGDVDMRCPNYRSCPAQLTERIYYAASRGAFDIEALGFEAAK 487 Query: 493 FFFKSEDPA-FSIRIPADIFTLQRRQ-------------------------QTSTTKIEN 526 +P + A +F L + Sbjct: 488 ALTAPAEPEQPPLTSEAFLFDLTAEDLRDVKIRREKKVKGVGTGKFELVPYFYTKPTKAK 547 Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 + NL+ + K ++ L R + +L +RHVG AR+LA + S AQ Sbjct: 548 PEPVPTKNTQNLFVELEKAKSQPLWRVLVALSLRHVGPTAARALATEFGSMDAIAQA--- 604 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 D L V VG +IA +I+E++ + + + ++ Sbjct: 605 -------DRDRLAAVDGVGGVIADSIIEWFATDWHREVLARWADAGVRMEDERDASIER- 656 Query: 647 IENKKLVFTGTLQ-----------KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695 TL+ R A+E + G S +S+KT ++ G + G Sbjct: 657 ----------TLEGVTVVVTGTLVNYSRDSAKEAIIVRGGRASGSVSKKTHFVVAGASAG 706 Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719 SKL+KA+ LG+ +++E+ F LL Sbjct: 707 SKLDKAEALGIPVLDEDGFTKLLA 730 >gi|300173629|ref|YP_003772795.1| DNA ligase, NAD-dependent [Leuconostoc gasicomitatum LMG 18811] gi|299888008|emb|CBL91976.1| DNA ligase, NAD-dependent [Leuconostoc gasicomitatum LMG 18811] Length = 681 Score = 490 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 244/717 (34%), Positives = 379/717 (52%), Gaps = 51/717 (7%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 +L PIE LS E A+ E++ L+ ++ + YY+ PI+ D YDAL R A+ FP Sbjct: 3 PELKPIEKLSREAAQHEIAKLQDDLRQYGIAYYEQDAPIVEDYIYDALYARLVALETVFP 62 Query: 64 DLARSEDPNGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 +P+ P +GG M L KV H P LSL ++++E+L ++ +R + + Sbjct: 63 QFI---NPDSPTQNVGGAMTKSGLEKVVHPAPMLSLGDVFSLEELDEWDSRTTKSLGFQS 119 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 D + LE KIDG + + Y GK V A+ RG+G GEDV+A ++ I IP+VL+ I Sbjct: 120 D----YNLELKIDGLAVALTYVSGKLVQASTRGNGTIGEDVTANVKMIKAIPQVLNEPI- 174 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVH 241 IEVRGE+Y+ K+ F LN + G P+ANPRNAA+G LR+LN R L+ FV+ Sbjct: 175 -TIEVRGEIYMPKSSFSTLNKQRELDGLAPFANPRNAAAGSLRQLNAKIMKQRNLSAFVY 233 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 + + + Q + L++ LG P + R I +Y E R L Y IDG Sbjct: 234 YTAEPDILGSTTQSDALKRFSSLGLPTDTHNRVMTKMADINNYIAEYTVTRDNLAYGIDG 293 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V KV++ Q LG + PRW I++KF ++A T + I+ +GRTG +TP A ++PV Sbjct: 294 VVVKVNQLDDQLDLGNTVKIPRWAIAYKFPPEEALTVVRAIEWTVGRTGAVTPTAVMDPV 353 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G + A+LHN DY+ + +R+ D V + +AG++IP++ +I+++R Sbjct: 354 QLAGTTVQRASLHNPDYL-----------NEKGVRLEDTVTLHKAGDIIPEIGQVILSKR 402 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 ++ + P FCP CQS +V A RC CSAQ E L HF SR+A Sbjct: 403 PTGSEAYEIPVFCPACQSELVHIEGE------VALRCINPF-CSAQIQEGLTHFASRNAM 455 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 NIEG+G + ++ K A I+ A I+ L Q S + F + +V NL S Sbjct: 456 NIEGMGPKVIEQLLK----ADYIKDVAAIYRLTSEQLFS------LDKFKEKAVNNLLMS 505 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I + ++ SLE+ +F LGIR VGA+ AR LA + + Q+ A + + Sbjct: 506 IARSKDNSLEKLLFGLGIRMVGAKAARVLAGKFKNLQSIATATT----------EDIANI 555 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQ 659 +GD IA++IV+++ P + ++ L + E + ++ +K++V TG L+ Sbjct: 556 DGIGDRIARSIVQYFDMPESKQLLQELTDAGVNQKYLSDVEIDENNFFYHKRIVLTGKLE 615 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 K R +++ GA VS +S KTD++I G+ GSKL KA +LGV E++F+ Sbjct: 616 KNSRSMVTKWLQDHGASVSGAVSAKTDLLIAGEAAGSKLRKANELGVPTWTEQEFIS 672 >gi|332359434|gb|EGJ37254.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK355] Length = 652 Score = 490 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 219/701 (31%), Positives = 357/701 (50%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ +S L + ++ + YY +P + DSEYD L R + +P P+ P ++ Sbjct: 2 KERMSELVKLLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ K H P SL+ ++ E+L F RI + + + + E KIDG Sbjct: 59 VGGKILEGFEKYPHQYPLFSLQDAFSREELIVFDQRIRK-----EFPQVSYLCELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YEKG V A RGDG GE+++ ++ + IP L + I VRGE Y+ K Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F A+N G +ANPRNAA+G LR+L+ + N + S Q E+ Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQVGSQEEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L K+ L F VN A++ + + ++ R +LPY+IDG+V KV++ ++Q++LG Sbjct: 231 LNKLADLDFSVNPTRILADSIQAVWEFIEKIAQERDSLPYEIDGIVIKVNDLAVQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR D V+V +AG++IP V+ ++ ++R + PS+CP C Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEPL-EIPSYCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 ++ A I+ L + + F + S LY +I + S ER +F L Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYTAIQASKENSAERLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ +R L + + +Q + + +G +IAQ++ +++ Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + L + + + + +V TG LQK+ R++A+E + LGA Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 VS +S+KTD+++ G + GSKL KAQ+LG++I +E+ L Sbjct: 612 VSGSVSKKTDLVVTGQDAGSKLAKAQELGIEIRDEDWLDSL 652 >gi|183603490|ref|ZP_02717204.2| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC3059-06] gi|183576581|gb|EDT97109.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC3059-06] Length = 648 Score = 490 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 212/698 (30%), Positives = 355/698 (50%), Gaps = 51/698 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 ++ L ++ + YY P + DSEYD L R + A+P+ + + P +++GG Sbjct: 1 MNELVALLNRYATEYYTSDNPSVADSEYDRLYRELVELETAYPEQVLA---DSPTHRVGG 57 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 ++ K +H P SL+ ++ E+L F R+ + + E KIDG I+ Sbjct: 58 KVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLSIS 112 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + YEKG V RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 113 LTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASFDQ 170 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260 +N G +ANPRNAA+G LR+L+ + N + S Q + L+ Sbjct: 171 VNQVRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGLKY 229 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 + LGF VN A I ++ E+ R LPYDIDG+V KV++ + Q++LG + Sbjct: 230 LEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVK 289 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 +P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 290 APKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI- 348 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S Sbjct: 349 ----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCNSD 397 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 ++ + A RC C AQ +E L HF SRDA NI GLG ++ F Sbjct: 398 LLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----A 446 Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560 A ++ ADI+ LQ + G + S LY +I + S E+ +F LGIR Sbjct: 447 ANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIR 500 Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 HVG+++++ L +Y+ S +N +Q D + + +G +IA+++ ++ Sbjct: 501 HVGSKVSQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFATEG 550 Query: 621 NICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 + + L + + + + +V TG L++++R +A+ + LGA V+ Sbjct: 551 SEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTG 610 Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +S+KTD+++VG + GSKL+KAQ+LG+++ +E L Sbjct: 611 SISKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 648 >gi|163788595|ref|ZP_02183040.1| putative DNA ligase [Flavobacteriales bacterium ALC-1] gi|159875832|gb|EDP69891.1| putative DNA ligase [Flavobacteriales bacterium ALC-1] Length = 664 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 226/705 (32%), Positives = 363/705 (51%), Gaps = 47/705 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L +E+ H+ YY I D E+D + A+ A P+ DPN P + Sbjct: 4 KQKIEILREELRQHNYNYYILDNATISDYEFDIKLKELQALEEANPEFF---DPNSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ + H SL+ ++ EDL + TRI + D + + E K DG Sbjct: 61 VGGEITKNFNTTVHDFRMYSLDNSYSKEDLLDWETRIKKMV----DGEVQYNCELKYDGA 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE GK V A RGDG G++V+A ++ I T+P L + PE ++RGE+ + Sbjct: 117 SMNLTYENGKLVRAVTRGDGVQGDEVTANVKTIKTVPLQLKGDFPERFDIRGEIILPIEG 176 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 FL +N+E IA +PY NPRN ASG L+ + ++ + + K + + + Q+E Sbjct: 177 FLKMNEERIANDEEPYRNPRNTASGSLKLQDSAEVAKRPLECLLYSIKGNNLNIQSQFEG 236 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+K R GF V + N+ ++ Y R LPY+IDG+V KV++ Q +LG Sbjct: 237 LKKAREWGFKVPKEAKLVNSIDAVLDYVEYWDEHRHNLPYEIDGVVVKVNDLYQQDELGF 296 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A++PRW +++KF +Q STRL +I Q+GRTG +TPVA LEPV + G ++ A+LHN D Sbjct: 297 TAKAPRWAMAYKFKAEQVSTRLNEITYQVGRTGAITPVANLEPVQLAGTIVKRASLHNAD 356 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ L DIR GD V V++ GE+IPK++ + +++R D++P + S CP C Sbjct: 357 QIEKL-----------DIREGDEVFVEKGGEIIPKIIAVDLSKRPEDSKPTVYISCCPEC 405 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 ++ + R A H C C Q + R++HF+SR A +IEGLG + + K Sbjct: 406 ETTLERIEGE------AKHYCPNYNGCPPQVVGRIQHFISRKAMDIEGLGGETVALLVKE 459 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I+ +D++ L Q + + S NL + + + I ER +F L Sbjct: 460 ----GLIKDYSDLYELTVAQVI------PLERMAEKSAENLINGVEVSKQIPFERVLFGL 509 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR+VG +A+ LAK+Y S L LI V +G+ IA+++VEF+ Sbjct: 510 GIRYVGETVAKKLAKHYKSIDALMFATT----------LDLIAVDEIGERIAESVVEFFS 559 Query: 618 NPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 N +E L N + +++ +V +G + I R++ ++ + GA Sbjct: 560 LGENRKIIERLKSFGVQLEISADKLANQTDKLKGFSIVVSGVFETISRNELKKLIEDNGA 619 Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 VS+ +S KT ++ GD G SK KA+ L + I+ E++FL L+ Sbjct: 620 KVSSSISSKTSYLVAGDKMGPSKRTKAESLNIPIITEQEFLNKLK 664 >gi|111225216|ref|YP_716010.1| DNA ligase [Frankia alni ACN14a] gi|122953782|sp|Q0RDH8|DNLJ_FRAAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|111152748|emb|CAJ64491.1| DNA ligase [Frankia alni ACN14a] Length = 771 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 222/712 (31%), Positives = 354/712 (49%), Gaps = 48/712 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R + L +E+ H YY P + D+EYD L R A+ P+L P+ P K Sbjct: 60 RARAAELARELDEHAYRYYVLDSPTVSDAEYDRLMRELTALEEHHPEL---RTPDSPTQK 116 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 + G + V H LSL+ +++ ++ + R R + + E KIDG Sbjct: 117 VAGSYSTLFTPVEHLERLLSLDNVFDDDEFHLWAARAARETEVDG-----WLCELKIDGL 171 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196 + + YE+G+ V AA RGDG +GED++ IR + ++P L ++PE++EVRGEV+ Sbjct: 172 AVDLVYEEGRLVRAATRGDGRTGEDITPNIRTLASVPTRLRGASVPELLEVRGEVFFPTE 231 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255 F LN ++A G KP+ANPRNAA+G LR+ +P TR L+ VHGLG A Q Sbjct: 232 KFAELNASLVAGGGKPFANPRNAAAGSLRQKDPRVTATRPLDMIVHGLGAQRGFDAASQS 291 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + G PV+ + ++++ + R + ++IDG+V KVD F+LQ++L Sbjct: 292 AAYARFAEFGLPVSTHFEVLASVGDVLAFIHRWGRARHDVEHEIDGVVVKVDAFALQRRL 351 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +++PRW ++ K+ ++ +T+L DI + +GRTG +TP LEPV + G+ + ATLHN Sbjct: 352 GSTSKAPRWAVAFKYPPEEVTTKLRDIRVNVGRTGRVTPFGELEPVLVAGSTVGLATLHN 411 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D + G + + +GD V++++AG+VIP++V +V+ R + F P+ CP Sbjct: 412 VDEV-----------GRKGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGTERAFVMPTHCP 460 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + +VR RC AC AQ E + H SR+A +I+GLG + Sbjct: 461 ECGTELVRPEGE------VDIRCPNTDACPAQLRELIFHLASRNALDIDGLGYETAIALL 514 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 +++ + DIF L E + GFG + + + R+ L R + Sbjct: 515 EADR----VGDIGDIFHLTPE------SFEGLRGFGQKKIDQILRGVEAARHRPLWRLLV 564 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 L IRHVG AR+LA+ S A +A V VG IA A+V++ Sbjct: 565 GLSIRHVGPTAARALARELRSLDAIAAAPAEQLAA----------VEGVGPKIASAVVDW 614 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + + R+ V + + ++ +V TGTL R A E V G Sbjct: 615 FADARHRDIVARIAAGGASLADAGAAEGPRPLDGVAVVITGTLDGWSRDSATEAVQGRGG 674 Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 V+ +S+KT ++VG +PG +K +KA+ LGV +++E F LL++ R Sbjct: 675 KVTGSVSKKTAFVVVGADPGAAKYDKARSLGVPVLDEAGFAVLLERGADAAR 726 >gi|241668131|ref|ZP_04755709.1| DNA ligase (NAD(+)) [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876666|ref|ZP_05249376.1| DNA ligase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842687|gb|EET21101.1| DNA ligase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 678 Score = 488 bits (1257), Expect = e-135, Method: Composition-based stats. Identities = 260/718 (36%), Positives = 396/718 (55%), Gaps = 54/718 (7%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + L+ Q + + L + + Y+ KP+I DS+YD L R + P L Sbjct: 9 TDYKTLTKAQLKSYIDDLAEYLGEQSYLYHTIDKPVITDSDYDKLFRLLQDLVDDNPQLK 68 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 S N L+++GG++ + H SL ++++E+LR F +I I Sbjct: 69 PS---NSVLDRVGGDVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDI 117 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEII 185 EPK+DG I+I Y+ GKF YA RGDG GE VS ++ I +P + N PE + Sbjct: 118 ELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEEL 177 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG 244 EVRGE+ + K FL+LN+ M K +ANPRNAA+G +R L+ R L + +G+G Sbjct: 178 EVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIG 237 Query: 245 KT--SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + + Q+E++ ++ GF +++ + A F + Y+++M R+ L YDIDGL Sbjct: 238 YFSKDFVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVEVYHHKMSHQRADLAYDIDGL 297 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V+KV+ LQ +G AR P+W I++KF ++ + +L+++ Q+GRTG +TPVARL+PV Sbjct: 298 VFKVNNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVA 357 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 +GG +++NATLHN + IK +DIRVGDRV+V+RAG+VIP+VV + R Sbjct: 358 VGGVIVSNATLHNINEIKR-----------KDIRVGDRVIVRRAGDVIPEVVKSLSEYRK 406 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 PDAQ P+ CP+C S + + A +RCTGG C AQ ERLKHFVSR A + Sbjct: 407 PDAQMVEMPTNCPVCDSTIENIND------QAIYRCTGGWHCQAQTTERLKHFVSRKAMD 460 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+ LG + ++ A I+ PADI+ L Q T + G S N+ DSI Sbjct: 461 IDKLGAKLIEQLV----AADLIKYPADIYKLNFEQLTG------LERMGAKSSQNVLDSI 510 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 K + SL RFIF++GI+ VG + +LA ++ S ++F + + LI + Sbjct: 511 TKSKEPSLARFIFAIGIKDVGEVSSEALANHFGSLESFREA----------KFEQLIEIN 560 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNV-SSEIENKKLVFTGTLQK 660 +G+IIA+ IV F+Q+ NI V+ LL ++ + + NK +V TGT + Sbjct: 561 DIGEIIAKNIVSFWQDSLNIQIVDELLGNSINIQNPEKIEQAHNESFTNKTIVITGTFEN 620 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R + + + +GA V++ +S+KTD++I GDN GSKL KAQ LGV+++ EE LL Sbjct: 621 YNRTELTQLLKSMGAKVTSSVSKKTDMVICGDNAGSKLIKAQDLGVEVIFEEDLQNLL 678 >gi|118587526|ref|ZP_01544950.1| DNA ligase, NAD-dependent [Oenococcus oeni ATCC BAA-1163] gi|118431977|gb|EAV38719.1| DNA ligase, NAD-dependent [Oenococcus oeni ATCC BAA-1163] Length = 684 Score = 488 bits (1257), Expect = e-135, Method: Composition-based stats. Identities = 241/722 (33%), Positives = 385/722 (53%), Gaps = 55/722 (7%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 Q PIE L+ QA+ E+ L E++ YY+ P + D YDA R A+ A+P Sbjct: 5 DQFTPIEDLTFTQAQAEIRDLSDELTKWGREYYEEDNPSVEDYVYDAHYARLVALERAYP 64 Query: 64 DLARSEDPNGPLNKIGGEM-----NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118 LA P+ P + + L KV H +P LSL +++I++L + Sbjct: 65 SLAM---PDSPTQHVAAGNQTKNDSRGLQKVVHPVPMLSLGDVFSIQELLDWD----LVT 117 Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 K + + LE KIDG I++RYE G+ + A+ RGDG GE+V+ ++ I IP+VL+ Sbjct: 118 TKNAGSQQKYNLELKIDGLAISLRYENGRLIQASTRGDGSIGENVTDNVKTITEIPKVLN 177 Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237 + IEVRGE+Y+ K F LN + G+ +ANPRNAA+G LR+L+P R L+ Sbjct: 178 EPL--TIEVRGEIYMRKESFADLNRQRDEEGKTIFANPRNAAAGSLRQLDPKITAKRRLS 235 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 F++ + + Q ++L++ R LGFPVN+ + + + Y +E R LPY Sbjct: 236 SFIYYTAQNDVLGVNTQSDVLERFRQLGFPVNSSNKVIDRMTEVKDYIDEYTIKRDNLPY 295 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 IDG+V KV++ ++ +LG + PRW I++KF ++A T + DI +GRTG++TP A Sbjct: 296 GIDGVVVKVNDLDVENELGNTVKIPRWSIAYKFPPEEALTVVRDITWTVGRTGVVTPTAI 355 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 ++PV++ G + A+LHN DY++ +D+R+GD V + +AG++IP+V +I Sbjct: 356 MDPVSLAGTKVKRASLHNPDYLQ-----------EKDVRIGDTVTLHKAGDIIPEVGQVI 404 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 + +R DAQ + P +CP C+S++V A RC C AQ E L HF S Sbjct: 405 LKKRPADAQAYPIPVYCPSCKSKLVHVQGE------VALRCINP-ECPAQIKEGLIHFAS 457 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R+A NI+GLG + ++ IR +D++ L Q T+ + F D+S N Sbjct: 458 RNAMNIDGLGPRVVEQLLSKN----LIRKISDLYALTESQLTT------LDKFADLSSKN 507 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L +I++ R S+ER I +LGIR VGA+ A+ LA ++ + +N Sbjct: 508 LIQAIDRSRQNSVERLITALGIRGVGAKAAKVLAAHFKNLRNLQNA----------GAEE 557 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFT 655 + + VG ++A AI +++ + + L V + NK++V T Sbjct: 558 IAEIDGVGQVMADAIRQYFNSESVASLINELENFQVNFDYLTTSTVDEKNYFFNKRIVLT 617 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 G L R + Q ++ + GA VS+ +S KTD++I G + GSKLE+A +LG+K++NE+ F+ Sbjct: 618 GKLIHWTRPQMQAWLEEHGANVSSSVSSKTDLLIAGSDVGSKLERANKLGIKVINEQDFI 677 Query: 716 FL 717 L Sbjct: 678 NL 679 >gi|220904693|ref|YP_002480005.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254781312|sp|B8J0Q0|DNLJ_DESDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219868992|gb|ACL49327.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 712 Score = 488 bits (1257), Expect = e-135, Method: Composition-based stats. Identities = 235/728 (32%), Positives = 370/728 (50%), Gaps = 60/728 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + R+ + L E+ H+ Y+ +P I D ++DAL R + +P+L + P Sbjct: 24 EERRRVQWLTAELERHNHLYHTLDRPEISDDQFDALFRELQDLETRWPEL---RSLHSPT 80 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF--FTLEPK 133 ++GG + L K HS+ L+ +++ ++F R+ R W + + F +PK Sbjct: 81 LRVGGGLLEGLAKKAHSLQMYGLDNVFSAGQWQEFAERMARAWGGDVNGPLPESFWCDPK 140 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV--LSLNIPEIIEVRGEV 191 +DG + I Y G A RGDG GE V+ +R I T+P P +EVRGEV Sbjct: 141 LDGLALEIIYADGVLQEALTRGDGEVGEVVTDAVRTIRTVPLRLAGPGPFPARLEVRGEV 200 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLG---KTS 247 + KNDF LN++ A+G K +ANPRNAA+G LR+L+ I F + LG T Sbjct: 201 VMYKNDFAVLNEKQEALGLKTFANPRNAAAGTLRQLDTAIIGSRPLRFLAYSLGQALWTP 260 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 Q E++ ++R GF R ++ + Y ++ R+ P +IDG V K+D Sbjct: 261 APVCLLQSEVMSRLREYGFLTPPDGRLCSSVAEVEEYAQWVREHRAAFPMEIDGAVAKLD 320 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 Q+ LG AR+PR+ ++ KF + A T L DI+IQ+GRTG+LTPVA LEPV++GG + Sbjct: 321 NLEAQQALGFTARAPRFAVAFKFPAELAQTLLKDIEIQVGRTGVLTPVAMLEPVSVGGVM 380 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHNED I+ RD+RVGD V+V+RAG+VIP+VV ++ +R +A+ Sbjct: 381 VSRATLHNEDEIR-----------NRDVRVGDTVMVRRAGDVIPEVVGPVLEKRPENARE 429 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + FP CP C R+ AA RC +ACSA +L + HFVS+ +I G+G Sbjct: 430 YVFPHTCPACGQPAYREEGE------AAWRC-ENMACSAIRLRAITHFVSKAGLDIAGVG 482 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ ++ + ++ PAD+FTL ++ ++ +L V + Sbjct: 483 QKWIEQLV----TSGRVQSPADLFTLTVQELLGFERMGEVLAHKFVDALARAVH-----S 533 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L R I +LGIRHVG + AR+LA ++ + +L+ +P VG Sbjct: 534 ATLPRLISALGIRHVGEQTARTLALHFETLDELENA----------GAETLLSLPDVGPE 583 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-----------VSSEIENKKLVFTG 656 +A +I F+ +P N +E G S + K ++FTG Sbjct: 584 VASSIHNFFNSPANREQLERFRALGLWPRGGRSGGGSSGSTGEGGLASGPLAGKNILFTG 643 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL + R +A++ GA +S+K D ++ G+ GSKLEKAQ LGV ++ EE+F+ Sbjct: 644 TLS-MPRSEAEKLAETAGATPLGGVSKKLDYLVAGEKAGSKLEKAQALGVTVLTEEEFMT 702 Query: 717 LLQQYNTT 724 +L++ Sbjct: 703 MLREAKAA 710 >gi|160934306|ref|ZP_02081693.1| hypothetical protein CLOLEP_03177 [Clostridium leptum DSM 753] gi|156866979|gb|EDO60351.1| hypothetical protein CLOLEP_03177 [Clostridium leptum DSM 753] Length = 661 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 219/721 (30%), Positives = 350/721 (48%), Gaps = 73/721 (10%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + +E ARK L ++++YH YY+ P I D EYD + R + I A+P+L Sbjct: 1 MDLENARKSAEELRKKLNYHAKKYYEEDNPEITDYEYDMMLRELEGIELAYPELV---TE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG VTH +P SL ++ E+L F ++ + + +E Sbjct: 58 DSPTQRVGGAALNKFTPVTHEVPMESLHDSFSEEELFDFDRKVREVV-----PKVSYVVE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK DG +++ Y G FV + RGDG GEDV+ +R I TIP+ L+ +EVRGEV Sbjct: 113 PKFDGLSVSLEYRNGIFVRGSTRGDGSVGEDVTENLRTIKTIPKKLT-RAVPFLEVRGEV 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIF 250 Y+S FL L + KP+ NPRNAA+G LR+ + R L+ +V + + + Sbjct: 172 YMSNESFLKLLERQELNEEKPFKNPRNAAAGSLRQKDSRITAQRELDIYVFNIQQIEGVV 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF + +V + R + +DG V KV+ F Sbjct: 232 LNTHKESLDYLTELGFHTPPFYNCYDDMDDVVKEIQRIGEQRGGFSFPVDGAVIKVNAFH 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ +G ++ P+W + K+ ++ T LLDI+I +GRTG+LTP EPV + G ++ Sbjct: 292 DRELIGSTSKFPKWAEAFKYPPEEKETALLDIEINVGRTGVLTPTGLFEPVLLAGTTVSR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED+IK +DIR+GD V++++AGE+IP+VV + + PD++P+ Sbjct: 352 ATLHNEDFIK-----------EKDIRIGDTVVLRKAGEIIPEVVSVKAH--KPDSKPYQM 398 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C S+V R+ AA RC C AQ L L HFVSRDA ++EGLG Sbjct: 399 PEHCPSCGSKVQREPGE------AALRCDNTQ-CPAQLLRHLIHFVSRDAMDMEGLGPAV 451 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L+ + + P D+++L + + ++ G+ S NL +++ K + Sbjct: 452 LEQLVAHQ----LVSSPVDLYSLNKE------ALVDLERMGEKSAENLLNAVEKSKGNDF 501 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFI++LGIRH+G A+ L + + + + + + G I+A+ Sbjct: 502 YRFIYALGIRHIGLRAAKLLTQRFPTIDQILKAPP----------EEIAAIDGFGQIMAE 551 Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 + ++ P +++ K V+ E++ K V TG L R +A + Sbjct: 552 SAAYYFSLPETRKLIDSFRTKGVNLESFEKEESKDLRFSGKTFVLTGALPTYTRAEAGKM 611 Query: 670 VTQLGA-----------VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + G ++ G+ GSKL KAQ+LGV I++EE+FL +L Sbjct: 612 IEDRGGKVSSSVSKKTS-----------FVLAGEEAGSKLTKAQKLGVPIISEEEFLAML 660 Query: 719 Q 719 Q Sbjct: 661 Q 661 >gi|152992057|ref|YP_001357778.1| NAD-dependent DNA ligase LigA [Sulfurovum sp. NBC37-1] gi|166216278|sp|A6Q7G2|DNLJ_SULNB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|151423918|dbj|BAF71421.1| DNA ligase, NAD-dependent [Sulfurovum sp. NBC37-1] Length = 648 Score = 488 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 208/701 (29%), Positives = 356/701 (50%), Gaps = 57/701 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 E + + YY P+ D EYD L PD + P ++ Sbjct: 4 DEYKEKVKTLKKWAYAYYVEDNPVATDEEYDRLYHEVLDYEMKHPD---KALEDSPTKRV 60 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + K H S+E +++ E+++ ++ R+ + + + EPK DG Sbjct: 61 GGIVRDEFTKAKHIKRMWSMEDVFSKEEVQDWLDRVEK-----NVGECDYFCEPKFDGAS 115 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + + Y+ GK + A RGDG GE+V+ +R I ++P L ++ +IE+RGEV I K+DF Sbjct: 116 MNLLYDDGKLLRAITRGDGVVGEEVTDNVRTIRSVP--LVIDYKGLIEIRGEVVIRKDDF 173 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257 +N+E + G P+ANPRNAA+G LR+L+ + R L F+ G+G + + K E Sbjct: 174 EQINEERLKAGEAPFANPRNAAAGSLRQLDSSVTAKRRLVFYPWGIG-ENTLDQKKLSEK 232 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 ++ + GF +T I +Y + S R +P +DG+V KVDE Q++LG Sbjct: 233 MEFIYGQGFLRPPYHEACHTIDNIEKFYQFLISKRDEIPMMMDGMVIKVDEIEKQEELGY 292 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 + PRWM ++KF + T++ I +Q+GRTG++TPVA +EPVNI GA+++ ATLHN D Sbjct: 293 TVKFPRWMCAYKFPAVEKVTQIRAITLQVGRTGVITPVAEIEPVNIEGAMVSRATLHNFD 352 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ +DIR+GD V++ R+G+VIPK+ ++++ R D P P+ CP C Sbjct: 353 EIER-----------KDIRIGDHVIIIRSGDVIPKITKVLIDRRTGDEIPVERPTHCPTC 401 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S ++ + A L C + + + HF + +I+GLG + ++ K Sbjct: 402 GSELLDEG---------ALIKCQNLECPDRVINTIIHFAKKGCMDIDGLGSKIVEQLVKE 452 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I D+++L ++ GF + ++NL D+I + L R I ++ Sbjct: 453 ----GKIHDILDLYSLTYEDL------ADLEGFKEKKISNLLDAIAASKGAPLHRLITAM 502 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI H+G +R+LA + + + + ++ + +G+ +A +++EF + Sbjct: 503 GIEHIGEVASRALALEFG------------LGIVDAKYEDIVAIDGIGEEMANSLLEFMR 550 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 N V L + P++ + + + + K +V TGT+ + R K +E + +LGA V Sbjct: 551 V--NREKVLKLFNTIKPTVEKKVEAKENPFKGKIVVLTGTMSE-SRGKIKEMLEELGAKV 607 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 S +S+KTD +I G++ GSKL KA+ LGV + E++ +L Sbjct: 608 SGSVSKKTDFVIYGEDAGSKLTKAESLGVPTLTEDEMRAML 648 >gi|310644240|ref|YP_003948999.1| DNA ligase, nad-dependent [Paenibacillus polymyxa SC2] gi|309249191|gb|ADO58758.1| DNA ligase, NAD-dependent [Paenibacillus polymyxa SC2] Length = 671 Score = 488 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 206/714 (28%), Positives = 337/714 (47%), Gaps = 60/714 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 + L E++ ++ YY P I D EYD L A+ + P+ P ++G Sbjct: 6 RMEQLVAELNTYNYHYYTLDDPQISDKEYDVLYDELVALEQT----SGLVLPDSPTQRVG 61 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-------FTLEP 132 GE+ H P SL+K N+E LR + R+ + + + + +E Sbjct: 62 GEILKGFTPHRHLAPLWSLDKAQNMEQLRAWNARVVKLVNDYNTKNPEQPLPSPGYAIEL 121 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K DG + + Y G+ V A+ RG+G GE + A ++ I ++P + IEV+GE Sbjct: 122 KFDGLTLNLTYTDGQLVQASTRGNGVVGEGILAQVKTIKSVPLKIP-FQNGTIEVQGEGI 180 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 ++ + N++ + +P N RNAA+G LR LNP R LN F + +G I Sbjct: 181 MNLSVLSNYNEKAV----EPLKNARNAAAGALRNLNPKVTAERRLNAFFYNVGYADRIQF 236 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 EM+ +R F VN + + F ++ E++ R+ L Y IDG V K+ + Sbjct: 237 NSHQEMMTFLRENHFKVNPYLTYFDNFDDVMEQLIEIEESRAGLDYLIDGAVLKITDMRT 296 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 ++ LG + PRW +++KF ++ +T L ++ +GRTG +TP+AR+EPV + G + N Sbjct: 297 REVLGYTDKFPRWAVAYKFEAEETTTVLNSVEWNVGRTGKITPLARVEPVELAGVTVQNC 356 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TL+N G + R +G RV ++R+ +VIP+++ + +E + P Sbjct: 357 TLNNA---------GDIERKNLKFALGARVFIRRSNDVIPEILGKVTSENDGEE--IVVP 405 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + + A C L C Q + R+ HF SRDA +IE + Sbjct: 406 EHCPACGFPLQQR--------GAHLFCDNKLGCKPQIVARISHFASRDAMDIETFSDKTA 457 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 +R PAD++TLQ + FG+ NL ++ K + L Sbjct: 458 IQLHDE----LGVREPADLYTLQYDDLVK------LERFGEKKANNLLAALEKSKERDLA 507 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 F+++LGI + G R LA++Y LI +P VG I+A++ Sbjct: 508 SFLYALGIPNTGKATTRMLAEHYRDLHKTMSAT----------VDELIELPDVGGIVAES 557 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHE---KNVSSEIENKKLVFTGTLQKIQRHKAQE 668 IV F+ +P +E +L + K + S K +V TGTL ++ R +A Sbjct: 558 IVAFFADPFTQAGIEKMLSLGVKAQAPEAPQVKKIDSFFSGKTVVLTGTLHQLTRDEAAS 617 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFLLQQY 721 + LGA V+ +S+KTD++I G+ GSKL KAQQLG+ + +E++F+ LL+Q Sbjct: 618 RLEALGAKVAGSVSKKTDLVIAGEKAGSKLAKAQQLGIDTIEDEDEFIRLLEQE 671 >gi|312880304|ref|ZP_07740104.1| DNA ligase, NAD-dependent [Aminomonas paucivorans DSM 12260] gi|310783595|gb|EFQ23993.1| DNA ligase, NAD-dependent [Aminomonas paucivorans DSM 12260] Length = 696 Score = 488 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 228/729 (31%), Positives = 354/729 (48%), Gaps = 75/729 (10%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + A + L ++I HD YY P++ D YDAL R ++ A PDLA DP+ Sbjct: 9 DRDAAASRIRELTEQIRLHDHRYYVLDDPVLPDDAYDALLRELRSLERAHPDLA---DPD 65 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GG KVTH +P SL+ + E+L F+ R+ + ++ + EP Sbjct: 66 SPTGRVGGSPKEEFRKVTHPVPLQSLDNALDREELAAFLQRLRQGLGRE---EVPVVCEP 122 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG +T+RY G+FV A RGDG GEDV+ +R + ++P L+L +P +EVRGEV+ Sbjct: 123 KIDGLAVTLRYRDGRFVQGATRGDGRVGEDVTENLRTLRSLPLRLALPVPGELEVRGEVF 182 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 +++ DF LN G P+ANPRNAA+G LR+L+P R L F++ + Sbjct: 183 MARGDFGELNVRREEEGEPPFANPRNAAAGALRQLDPRITAQRRLRLFLYHVVDPLARGI 242 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q +L+ +R +GFP + + I ++ + R DG+V K+D+ + Sbjct: 243 TTQGALLEWLREVGFPTQGEWARCTSPGEIGTFLDRWDQKRHEHLAQTDGVVVKLDDLAA 302 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 ++ LG R+PRW I+ K+ ++ TR+ DI+I +GRTG+LTP A LEPV + G ++ A Sbjct: 303 RETLGSTNRAPRWAIAFKYPPEERPTRVRDIEISVGRTGVLTPTAVLEPVRLSGTVVQRA 362 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHN D + +D+R+GDRV V++AGE+IP+VV + R PF P Sbjct: 363 SLHNPDEVAR-----------KDVRIGDRVFVRKAGEIIPEVVRVDREARDGSESPFVPP 411 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 S CP C S VR + +C AQ E L+HF SR +I GLG++ Sbjct: 412 SACPACGSEAVRLEGEVALR-------CPNRSCPAQLKEGLRHFASRGGLDIRGLGEK-- 462 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + +R AD+F + + G S NL +++ ++ L Sbjct: 463 --LLEQAVDVGLVRDAADLFLVTED------AWAALDRMGAASARNLKEALEVAKDRPLR 514 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + +F+LGIR+VG +A LA + S + +L V VG ++A A Sbjct: 515 KLLFALGIRNVGDRLAADLAGRFGSLEALEACSE----------EALAAVEGVGPVVAAA 564 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRH----- 664 + F+++ N + L + E+ KLVFTG L+ R Sbjct: 565 VRAFFRDGHNRETLRRLREAGVRMEDPQEEKAPGGLPWAGWKLVFTGELESCPREAAQEA 624 Query: 665 ---------KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + +SRKT ++ G GSKLEKA++LG+ + +E +FL Sbjct: 625 ARARGAQTGE--------------SVSRKTTAVVAGARAGSKLEKARKLGIPVWDEARFL 670 Query: 716 FLLQQYNTT 724 LL++ T Sbjct: 671 ELLREAEET 679 >gi|18311241|ref|NP_563175.1| NAD-dependent DNA ligase LigA [Clostridium perfringens str. 13] gi|18145924|dbj|BAB81965.1| DNA ligase [Clostridium perfringens str. 13] Length = 665 Score = 488 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 210/715 (29%), Positives = 354/715 (49%), Gaps = 58/715 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S +K + L +E++ + YY + D +YD + + P Sbjct: 1 MSKMDKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE----TGYKLP 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNS 125 P ++G + K TH SL+K +E++R++ R +F ++ ++ Sbjct: 57 YSPTQRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPP 116 Query: 126 IFFTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 + + L K DG I + Y E G V A RG G GEDV+A ++ I +IP L ++ + Sbjct: 117 LKYILTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDF 174 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL 243 +E+ GE ++ F N E P N RN A+G LR LN + R L+ F + + Sbjct: 175 LEIHGEAIMTTEAFEKYNSEA----ETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDV 230 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G K EML ++ GFP+++ +R+ T I + ++ IR L YDIDGLV Sbjct: 231 GYKEGAPFKTYMEMLNFIKTKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLV 290 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 +D+ + LG + P+W I++KF ++A+T+LLD++ +GR+G ++P A LEPV + Sbjct: 291 IAIDDIRTRDLLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVEL 350 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G + ATL+N D I + +R+G V V+R+ +VIP+++ ++ Sbjct: 351 AGVTVKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LE 398 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + P CP C + +V + C L C Q ++ + HF R+A NI Sbjct: 399 GTKEIEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNI 450 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 G ++ + F+ D IR +D++ L+ K+ ++ FG NL D+I Sbjct: 451 AGFSEKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIE 500 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K ++ +LE F++SLGI +VG + A+ L K + S +N + + L+ V Sbjct: 501 KSKDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQD 550 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 VGDI+A++I+EF++ R + + LL ++ + S K +V TGTL+ R Sbjct: 551 VGDIVARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVVVTGTLENYSR 610 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +E + LGA VS +S+KTD +I G+ GSK +KA+ LGV I++EE+F ++ Sbjct: 611 TSIKEKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEFENMI 665 >gi|146329194|ref|YP_001209306.1| DNA ligase, NAD-dependent [Dichelobacter nodosus VCS1703A] gi|166215582|sp|A5EVZ5|DNLJ_DICNV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146232664|gb|ABQ13642.1| DNA ligase, NAD-dependent [Dichelobacter nodosus VCS1703A] Length = 678 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 249/702 (35%), Positives = 388/702 (55%), Gaps = 46/702 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 EL +L Q I H+ YY P I DSE+DAL ++ A+ A + P Sbjct: 8 IAAELEALRQTIRAHEYAYYVLEAPNIADSEFDALMQKLRALEAASG---LPIPADSPTQ 64 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG+ + V H I LSL+ ++N ++ F R+ +I EPK DG Sbjct: 65 RVGGKADNRFRNVAHHIAMLSLDNVFNADEFADFYRRLQEQLS--PTTAISLIAEPKFDG 122 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 I +RYE G A+ RGDG +GEDV+ +R I TIP L+ + P++IE+RGE+Y+ K Sbjct: 123 LAINLRYENGILQRASTRGDGITGEDVTQNVRTISTIPLRLNTHTPPDVIEIRGEIYMPK 182 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-AKG 253 F ALN++ A G K +ANPRNAASG LR+L+P R L FF +G G+ + + Sbjct: 183 KAFYALNEQAAANGEKIFANPRNAASGSLRQLDPRITARRQLAFFAYGYGEITNYQLPET 242 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +L++ R PV + ++A T ++ Y + R LP+DIDG+V+KV+ F+ Q+ Sbjct: 243 YEALLEQYRAWHIPVCSLHQKAATLPEALAAYQQFAKQREQLPFDIDGVVFKVNRFADQQ 302 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 + G AR+PRW I+ KF + +TR+ I++Q+GRTG +TPVARL+PV I G ++ +A+L Sbjct: 303 RAGFLARAPRWAIAWKFPALEKTTRIEAIELQVGRTGAVTPVARLQPVTIAGVVVRSASL 362 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN I +DIRVGD + ++RAG+VIP+VV +++ +R PDA F+ P Sbjct: 363 HNAREIAR-----------KDIRVGDTIFIRRAGDVIPEVVSVVLEKRLPDAPVFAMPEH 411 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C + +V++ + A RC+GGL C AQ++ L HF SR+A +I GLG++ + Sbjct: 412 CPVCAAAIVQNEDE------AVARCSGGLHCPAQRVAALIHFASREALDIRGLGEKLIQQ 465 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E +R PAD+F L S + G S N+ +I+ + +L RF Sbjct: 466 LVAQE----FVRTPADLFCLTADDWAS------LPRMGKKSAHNVMTAIDAAKKTTLARF 515 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I++LGIR VG+ A++LA ++ A D +L + +GD++A I Sbjct: 516 IYALGIRGVGSVNAQALAAHFGDL----------AAFMAADRAALQEIEGIGDVVAADIE 565 Query: 614 EFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F+ + N + A++ S +K + + + K +V TGTL + R +AQ+ + Sbjct: 566 HFFADEDNRAVIAAIVAAGVHWSTELTKKIIDAPLLGKTVVITGTLPSLSRAEAQKRLET 625 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 LGA V++ +SR+TD +++G + GSKL +AQ V I++E Q Sbjct: 626 LGAKVTSQVSRQTDFLLLGADAGSKLARAQAFSVPIIDEAQL 667 >gi|218885555|ref|YP_002434876.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|254781315|sp|B8DJT6|DNLJ_DESVM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218756509|gb|ACL07408.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 808 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 234/739 (31%), Positives = 366/739 (49%), Gaps = 74/739 (10%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 +L +++YH YY I D+EYDAL R I +P L P+ P +++G Sbjct: 38 EALRDQLNYHSHRYYVLDDAEISDAEYDALFRELQDIEAEWPSL---RTPDSPTHRVGDT 94 Query: 82 MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141 + +L H++ SL+ ++ E+ + I R + + D F +PK+DG + + Sbjct: 95 VVAALETQAHTLRMYSLDNAFSAEE---WDGFIQRMLRAEPDAPTAFWCDPKMDGLALEV 151 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRGEVYISKNDFL 199 YE G F A RGDG GE V+ +R + +P L P +EVRGEV I++ +F Sbjct: 152 IYENGVFTTALTRGDGEKGEIVTTAMRTVRNLPLRLHGEGPHPARLEVRGEVVITRAEFD 211 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI--------- 249 ALN G K +ANPRNAA+G +R+L+ + R L F +G+G+ Sbjct: 212 ALNAARRGAGEKLFANPRNAAAGSVRQLDASVTAGRPLRFLAYGVGQVVWPAETSDGAAS 271 Query: 250 -------FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 +++ + GF R+ T +++YY ++ RS LP+DIDG+ Sbjct: 272 AAQGPEARWATHGQVMAALADYGFGTPPDARRCETPAQVMAYYEDLGRRRSELPFDIDGV 331 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V K+D+ S Q LG AR+PRW I+ KF QA+TRL I IQ+GRTG+LTPVA L PV Sbjct: 332 VAKLDDLSAQAALGYTARAPRWAIALKFPAHQATTRLEHIAIQVGRTGVLTPVAELAPVA 391 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 +GG ++ ATLHNED I+ +D+RVGD V+V+RAG+VIP+VV +V++R Sbjct: 392 VGGVTVSRATLHNEDEIR-----------AKDLRVGDMVVVQRAGDVIPEVVRPLVDQRP 440 Query: 423 PDA-QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 F FP+ CP+C + V R+ AA RC C A + + HFVS+ Sbjct: 441 ASGLPEFEFPAECPVCHTPVRREPGE------AAWRCVNV-GCPAVVRQSIIHFVSKAGL 493 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +I+G+G++ ++ + PAD+F L + + G N + Sbjct: 494 DIQGVGRRWVELLVDR----GKVTSPADLFGLDK------QTLLAFERMGPKLAENFIAA 543 Query: 542 INKRRN-ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 + R +L R I +LGIRHVG + AR+LA ++ +L + Sbjct: 544 FDTARTGATLNRLICALGIRHVGEQTARTLAAHFADLDALGAA----------QAETLQQ 593 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---------SEIENKK 651 +P +G +A +I F+ N N +E L + + + Sbjct: 594 LPDIGPEVAASIRAFFANEGNRALLERLRGVGLWPVRPVRPEADAAGAPGEGSGPLAGLR 653 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 ++FTG+L + R A+ GA + +S+K D+++VGD PGSKL+KA +LG++++ E Sbjct: 654 VLFTGSLTTLTRSDAERRAVAAGANILGSVSKKLDLLVVGDKPGSKLDKATKLGIRVLRE 713 Query: 712 EQFLFLLQQYNTTLRIHDD 730 ++FL LL+ + D Sbjct: 714 QEFLDLLEGRGGDVPEDGD 732 >gi|308071012|ref|YP_003872617.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Paenibacillus polymyxa E681] gi|305860291|gb|ADM72079.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Paenibacillus polymyxa E681] Length = 680 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 206/714 (28%), Positives = 337/714 (47%), Gaps = 60/714 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 + L E++ ++ YY +P I D EYD L A+ + P+ P ++G Sbjct: 15 RMEQLVAELNTYNYHYYTLDEPKISDKEYDVLYDELVALEQT----SGLVLPDSPTQRVG 70 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-------FTLEP 132 GE+ H P SL+K N+E LR + R+ + + + + +E Sbjct: 71 GELLKGFTPHRHLAPLWSLDKAQNMEQLRAWNARVVKLVNDYNTKNPEQPLPSPGYAIEL 130 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K DG + + Y G+ V A+ RG+G GE + A ++ I ++P + IEV+GE Sbjct: 131 KFDGLTLNLTYTDGQLVQASTRGNGVVGEGILAQVKTIKSVPLTIP-FRNGTIEVQGEGI 189 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 ++ + N + P N RNAA+G LR LNP R LN F + +G I Sbjct: 190 MNLSVLSKYNKTAV----DPLKNARNAAAGALRNLNPKVTAERRLNAFFYNVGYADRIQF 245 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 EM+ +R F VN + + F ++ E++ R+ L Y IDG V K+ + Sbjct: 246 NSHQEMMTFLRENHFKVNPYLTYFDNFEDVMEQLIEIEESRAGLDYLIDGAVLKITDMRT 305 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 ++ LG + PRW +++KF ++ +T L ++ +GRTG +TP+AR+EPV + G + N Sbjct: 306 REALGYTDKFPRWAVAYKFEAEETTTVLNSVEWNVGRTGKITPLARVEPVELAGVTVQNC 365 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TL+N G + R +G RV ++R+ +VIP+++ + +E + P Sbjct: 366 TLNNA---------GDIERKNLKFALGARVFIRRSNDVIPEILGKVTSENDGEE--IVVP 414 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + + A C L C Q + R+ HF SRDA +IE + Sbjct: 415 DHCPACGFPLQQR--------GAHLFCDNKLGCKPQIVARISHFASRDAMDIETFSDKTA 466 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + +R PAD++TLQ + FG+ +NL ++ K ++ L Sbjct: 467 IQLHDELE----VREPADLYTLQYDDLVK------LERFGEKKASNLLAALEKSKDRDLA 516 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 F+++LGI + G R LA++Y LI +P VG I+A++ Sbjct: 517 SFLYALGIPNTGKATTRMLAEHYRDLHKTMSAT----------VEELIELPDVGGIVAES 566 Query: 612 IVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 IV F+ +P +E +L EK S K +V TGTL ++ R +A Sbjct: 567 IVAFFADPFTQAGIEKMLSLGVKAQAPEAPQEKKTDSFFSGKTVVLTGTLHQLTRDEAVS 626 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFLLQQY 721 + +GA V+ +S+KTD++I G+ GSKL KAQQLG+ + +E++F+ LL+Q Sbjct: 627 KLEAMGAKVAGSVSKKTDLVIAGEKAGSKLAKAQQLGIDTIEDEDEFIRLLEQE 680 >gi|113475951|ref|YP_722012.1| NAD-dependent DNA ligase LigA [Trichodesmium erythraeum IMS101] gi|123160812|sp|Q112N5|DNLJ_TRIEI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110166999|gb|ABG51539.1| DNA ligase, NAD-dependent [Trichodesmium erythraeum IMS101] Length = 774 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 224/812 (27%), Positives = 364/812 (44%), Gaps = 143/812 (17%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + L++E + +L +++ YY +PI+ D+ YD L R + +P L S Sbjct: 1 MAKLTLE-VEQYTQNLREKLQEAGYSYYVLDQPIMEDAVYDHLLRELQELESQYPQLIVS 59 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW---------- 118 + P ++G + V H+IP SLE +NI++L+ + R R Sbjct: 60 ---DSPTQRVGEKPATKFVSVKHNIPLYSLENAFNIQELKSWQERWQRQTLLENQRLTLP 116 Query: 119 --------------------------------QKKDDNSIFFTLEPKIDGTMITIRYEKG 146 + D S+ + E KIDG+ + + YE G Sbjct: 117 LRGEVKIKNSIDESDNFSTVNSLAPVITGSNFDEIDLASVDYICELKIDGSALALTYENG 176 Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKNDFLALNDEM 205 V A RGDG GED++ ++ I +IP N P ++EVRGE ++S N F +N E Sbjct: 177 LLVRGATRGDGIMGEDITQNVKTINSIPLKLKVDNPPLLVEVRGEAFLSINVFENINAER 236 Query: 206 IAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG----KTSEIFAKGQYEMLQK 260 +G +ANPRNAA+G LR+L+ R L+FF + L +++ + Q + L+ Sbjct: 237 EKIGEIIFANPRNAAAGTLRQLDSKIVAKRRLDFFAYTLYLEENESNFLQFYTQSQCLEL 296 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 ++ LGF VN + ++ + + +YY R LPY DG+V K++ SLQ++LG + Sbjct: 297 LKKLGFKVNPNGQVCSSLNEVEAYYQYWDKQRENLPYLTDGVVVKLNSLSLQEKLGFTQK 356 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 PRW I+ K+ ++ T + + +Q+GRTG +TPVA L+PV + G + A+LHN D + Sbjct: 357 YPRWAIALKYPAEEIPTIVQGVTVQVGRTGAITPVAELKPVQLAGTTVQRASLHNSDRLA 416 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 L D+ +GD V+V++AGE+IP+VV ++ R AQ F P+ CP C Sbjct: 417 EL-----------DLHIGDTVIVRKAGEIIPEVVRVLPELRPKKAQRFQMPTHCPECSQP 465 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 +++ N A RC +C A L H+ SR A +I GLG++ + S Sbjct: 466 LIKPRNE------AVTRCINT-SCPAILRGSLAHWASRAALDINGLGEKLVQQLVNS--- 515 Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560 ++ AD++ L TS + G S L +++ + R ++ LGIR Sbjct: 516 -GLVKSVADLYNLTMEDLTS------LERMGKKSANKLIEAMGTSKAQPWRRVLYGLGIR 568 Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 HVG A L + + + +Q + V +G IAQ + ++++ P Sbjct: 569 HVGTVNAELLTQKFPTVAQLSQA----------KATDIETVHGIGPEIAQYVEQWFRVPA 618 Query: 621 NICAVEALLKEVSPSIGRHEKN-------------------------------------- 642 N VE L + + Sbjct: 619 NQNLVERLKIAGVTMETKDSTSGMAKLTETVLAIQNLAARQNLVARQNLENLVERLKIAG 678 Query: 643 ---------------VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 S + K V TGTL ++R +A+ + G V++ +S KTD Sbjct: 679 VTMETKDSTSDVVEVQSGLLRGKTFVLTGTLPTMRRDEAKNLIQNAGGKVTSSVSSKTDF 738 Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 I+VG++ GSKLEKA++LGVK ++E + L L Sbjct: 739 IVVGEDGGSKLEKAKKLGVKELSESELLEALA 770 >gi|226356158|ref|YP_002785898.1| DNA ligase (NAD(+)) [Deinococcus deserti VCD115] gi|254778151|sp|C1CVC7|DNLJ2_DEIDV RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 2 gi|226318148|gb|ACO46144.1| putative DNA ligase (NAD(+)) [Deinococcus deserti VCD115] Length = 686 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 218/710 (30%), Positives = 347/710 (48%), Gaps = 46/710 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +L E++ H+ YY+ P I D EYDAL R + P+ + P+ I Sbjct: 11 ARYLALRAEVARHNRAYYEQDAPEISDDEYDALARALRDMEARHPEWVED---DSPVQTI 67 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NSIFFTLEPKIDGT 137 GG + + V H P SL+ +++ ++LR++ ++ R + + FT E KIDG Sbjct: 68 GGAPSAAFEPVAHLTPMTSLDNVFDADELREWQEKLARSLNLPPESDDFTFTGEIKIDGL 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + Y G +AA RG+G GE V+A + IP IP+ L +EVRGEVY+S+ D Sbjct: 128 SVNLYYLDGTLQWAATRGNGRVGEMVTAQVLTIPGIPQHLDGL-KGQLEVRGEVYLSRAD 186 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F A N + +G NPRN A+G LR+ +P TR L + LG+ + A+ Q E Sbjct: 187 FAAFNAQAEELGTPLLKNPRNGAAGALRQKDPEVTRTRNLKAIFYSLGRRDGVEARTQSE 246 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +LQ + GFPV++ + Y+ M RS +D DG V K+D +LQ++ G Sbjct: 247 VLQWLAGRGFPVSHYSETFRGYVAAADYHRRMTEARSNFEFDADGTVIKLDPLALQEEAG 306 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +R+PRW I+ KF +Q T L I + +GRTG L P+A L P I G+ ++ ATLHNE Sbjct: 307 FTSRAPRWAIAFKFPVEQVETVLESITVNVGRTGKLAPLAHLAPRLIEGSTVSKATLHNE 366 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI+ + D+RVGD V+V+++G VIP+++ ++ +R PF FP++CP Sbjct: 367 DYIRQM-----------DLRVGDTVVVRKSGGVIPQIMRVVTEKRPEKTTPFVFPTYCPE 415 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C V R A C AC AQ+ ER+++FVSR A ++ G+G++ Sbjct: 416 CGHEVTRAEG------DANTYCPNP-ACPAQRFERIRYFVSRGAMDVRGIGEK----LVI 464 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 +R AD++ L Q + G+ N+ + + L R I + Sbjct: 465 QVIETGLVRDAADLYLLTAEQLAG------LERGGEKKAQNVLAQLEASKTRPLWRLINA 518 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LG+ HVG A++LA+ + S + + VP +G + A ++ Sbjct: 519 LGMTHVGERNAQALARAFGSLDALLRATP----------EQIEAVPGMGKVTAVSVSAAL 568 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 +P +E L S + ++ V TG+L + R + + + GA Sbjct: 569 ADPTMRNLIERLRAAG-MSPEETQTVRGEQLAGLNFVITGSLSQ-PRDELKALLEAAGAR 626 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 V+ ++RKT +I G + GSKL++A++L V +++E LL Q L Sbjct: 627 VTGSVTRKTSYLIAGQDAGSKLDRARELAVPVLDEAALGTLLHQRGVQLP 676 >gi|195977913|ref|YP_002123157.1| NAD-dependent DNA ligase LigA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|254781421|sp|B4U2C7|DNLJ_STREM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|195974618|gb|ACG62144.1| DNA ligase LigA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 652 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 214/703 (30%), Positives = 349/703 (49%), Gaps = 55/703 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L ++ + YY P + DSEYD L R + +P + P Sbjct: 2 KKRIRELTDLLNQYRQEYYTNDAPSVSDSEYDKLYRELVELEQTYPAYILK---DSPTQL 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F RI + E KIDG Sbjct: 59 VGGTILTGFQKYQHQYPLFSLQDAFSREELNAFDQRIK-----SAFPEAEYLAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G A RGDG GE+++ I+ I IP L+ + +RGE Y+S+ Sbjct: 114 SISLVYEAGILKVGATRGDGTIGENITENIKNIKDIP--KRLSQALDVTIRGEAYMSRKA 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD--ITRYLNFFVHGLGKTSEIFAKGQY 255 F +N+E G +ANPRNAA+G LR+L+ + F +G A Q Sbjct: 172 FKTINEERQENGEPEFANPRNAAAGTLRQLDTRIVAKRQLATFLYQEVGL---EAADSQQ 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 L+++ LGF VN+ +++ + I + +++ R LPY+IDG+V KV++ ++Q++L Sbjct: 229 RTLERLADLGFSVNSHYLLSSSMNDIWDFIQSIEATREELPYEIDGVVVKVNQLAIQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++PRW I++KF ++ ++ +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPRWAIAYKFPAEEKEAEIVSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 DYI +DIR+GD V+V +AG++IP V+ ++ +R + P P+ CP Sbjct: 349 VDYI-----------AEKDIRIGDTVVVYKAGDIIPAVLRVVEAKR-SNQTPMPIPTACP 396 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 CQS++V + A RC L C + L+HF SR A NI GLG ++ + Sbjct: 397 SCQSQLVHFEDE------VALRCINPL-CPSLIQRSLEHFASRQAMNIAGLGPAVVEKLY 449 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 A + DI+ L + G + S L +I + + S E+ +F Sbjct: 450 S----AGLVHDVTDIYRLSLEDL------LMLDGIKEKSAEKLLAAIEQSKANSAEKLLF 499 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIRH+GA+ +R + + Y + L ++ +G +I Q++V++ Sbjct: 500 GLGIRHIGAKASRLILETYGDLETLLSVT----------AEELAQIDGLGLVIGQSLVQY 549 Query: 616 YQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 +Q + + L + +E+ +V TG L+K+ R +A+E + QLG Sbjct: 550 FQQDQATQLLAELKSAGVNLAYLGQRPDRQAELFGLTVVLTGKLEKLNRTQAKEKLEQLG 609 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 A V+ +S+KTD+++ G GSKL KAQQLG++I +E+ L L Sbjct: 610 AKVTGSVSKKTDLVVAGSEAGSKLAKAQQLGIRIEDEDWLLNL 652 >gi|292670878|ref|ZP_06604304.1| DNA ligase [Selenomonas noxia ATCC 43541] gi|292647499|gb|EFF65471.1| DNA ligase [Selenomonas noxia ATCC 43541] Length = 673 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 217/709 (30%), Positives = 352/709 (49%), Gaps = 44/709 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 I++ + EL+ L ++I + YY + I D ++D L +R AI +P+L N Sbjct: 3 DIKEIKNELTELRKKIRKYSKQYYDENASDISDYDFDLLMQRLKAIEAEYPELI---TKN 59 Query: 73 GPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P K+GG + V H +P LSL+ +++ +++R F+T + S F +E Sbjct: 60 SPTQKVGGTAQREVGVLVPHDVPMLSLQDVFSEDEIRTFVTGV-----LSHFPSAEFVVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHS-GEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 KIDG + +RYE G V A RGDG GEDV+ RAI + L ++P EVRGE Sbjct: 115 EKIDGLSLALRYENGALVRAITRGDGVVQGEDVTLNARAISDVVETLHDSVPY-FEVRGE 173 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VY+ + F +N+ +G KP+ANPRN A+G LR+L+ R L+ FV L + Sbjct: 174 VYMERAAFAEVNERQELLGLKPFANPRNCAAGTLRQLDARVTKERKLSMFVFNLQRAEGH 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + MR G + +T + + + + R LPYDIDG V KV++F Sbjct: 234 SFTSHTDAYDFMRAQGIKIIANYNVCHTADEVWNAIMAIGARRGDLPYDIDGAVVKVNDF 293 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + + +LG A++PRW I++K+ ++ T L +I++ +GRTG +TP A +PV + G + Sbjct: 294 AQRAELGTTAKAPRWAIAYKYPPEEKETILRNIELSVGRTGRITPTAVFDPVQLCGTRVE 353 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN+DYI L D+R+GD +LV ++GE+IP+V +I +R + PF Sbjct: 354 RATLHNQDYIDSL-----------DVRIGDTILVYKSGEIIPRVKAVIKEKRPKNTPPFV 402 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 CP+C S VR+ + A +C AC AQ + +FVSR+A +I+G G+ Sbjct: 403 IGDQCPVCGSHAVRETD------TADMKC-QNPACPAQVENHILNFVSRNAMDIKGFGES 455 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + A + ADI++L + + + SV N +IN+ + + Sbjct: 456 AIIALTH----AGYLHDIADIYSLHLHRNELISSGLI---GREKSVDNRLAAINESKANT 508 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +R + LGI +G A SL + + S + D + VP +G+I Sbjct: 509 PDRLLTGLGISGIGRAAAVSLMQAFPSIDALQETACT-------DPEKIRAVPDMGEISV 561 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 Q + EF+ + ++ K + ++ K V TGTL + R + Sbjct: 562 QKLTEFFTSETGRALLDKFRAAGVNFASTPMKPAGAALDGKSFVITGTLPTLSREECASL 621 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +T G V + +S+KTD ++ G+ GSKL+KA+ LG+ I++E ++ Sbjct: 622 ITSHGGTVKSSVSKKTDYLVAGEAAGSKLQKAEDLGIPILDEASLRDMI 670 >gi|76801093|ref|YP_326101.1| NAD-dependent DNA ligase LigA [Natronomonas pharaonis DSM 2160] gi|121729348|sp|Q3ITK1|DNLJ_NATPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|76556958|emb|CAI48532.1| DNA ligase (NAD) [Natronomonas pharaonis DSM 2160] Length = 691 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 221/723 (30%), Positives = 351/723 (48%), Gaps = 51/723 (7%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 P++ L A +++ +L + I +HD YYQ + P+I D YD L R + + F Sbjct: 17 FEPVDELDAASATRQVETLREAIRFHDYRYYQLADPVISDRAYDQLFERLERLESKFD-- 74 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-DN 124 P ++GGE L V H P S+E ++D+R F TRI + Sbjct: 75 --RSSATSPTQRVGGEPLDELETVEHVAPMRSIESSVEVDDIRDFDTRIQERLAAAGYEG 132 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 + + EPK DG + + YE+G+ AA RGDG G+DV+A +R I ++P L + P Sbjct: 133 PVRYLCEPKFDGLSVELVYEEGELSRAATRGDGQEGDDVTANVRTIRSVPLTLDGDCPSF 192 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 + VRGE+++ K+ F N E + G +P++NPRNAA+G LR+L+P+ R L+ FV + Sbjct: 193 LAVRGEIFMPKDAFQEYNRERLERGEEPFSNPRNAAAGTLRQLDPSVTAERPLDCFVFDI 252 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 + + + + GF V++ + + +++ EM R++L Y+IDG+V Sbjct: 253 LDDGGRGFETRMAEHEAVESWGFQVDDHTARVDDIEAAIAFREEMLDGRASLDYEIDGIV 312 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 K+D LG AR+PRW ++KF + T + DI +Q+GRTG LTPVA L+PV + Sbjct: 313 IKLDRKDACALLGATARAPRWAYAYKFPARTEETTVRDIVLQVGRTGRLTPVALLDPVEV 372 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G ++ ATLHN I L + +GDRV +KRAG+VIP + ++ +ER Sbjct: 373 SGVEVSRATLHNPQQIAEL-----------GVGIGDRVTLKRAGDVIPYIEAVVDSER-- 419 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 F FP CP+C+S + + CTGG+AC AQ ++H+ SR +I Sbjct: 420 -EAHFEFPDRCPVCESPL--------ERDGPLAYCTGGVACPAQLRRAVEHYASRSGLDI 470 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGLG+ +D A + D++ L S + + G+G S NL + + Sbjct: 471 EGLGESAVDQLVD----AGLVERLPDLYDL------SVADVAELDGWGRTSAENLLEELE 520 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 L F+ +LGI VG A +A+ + + L V Sbjct: 521 ASTEPPLPAFLSALGIPGVGTTTAADIAREFGTLDAVMDAT----------AEELRAVDG 570 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 +G + I EF+ + RN +E L K + + + VFTG+L + R Sbjct: 571 IGPTLGGEIAEFFDSDRNQQVIEQLRKRGV--DPEPAETAGDALSGQTFVFTGSLDGLTR 628 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722 +A E V G + +S TD ++VGD+PG K E A + GV+ +++ F LL+ + Sbjct: 629 EEAHELVETSGGTATGSVSGNTDYLVVGDSPGQRKREAANEHGVETLSQSDFESLLESHG 688 Query: 723 TTL 725 + Sbjct: 689 IEI 691 >gi|208779663|ref|ZP_03247008.1| DNA ligase, NAD-dependent [Francisella novicida FTG] gi|208744624|gb|EDZ90923.1| DNA ligase, NAD-dependent [Francisella novicida FTG] Length = 678 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 255/713 (35%), Positives = 391/713 (54%), Gaps = 54/713 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ + + + L +S Y+ KPII DS+YD L R + + P Sbjct: 14 LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N L+++GGE+ + H SL ++++E+LR F +I I E Sbjct: 71 NSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDIELECE 122 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG I+I Y+ GKF YA RGDG GE VS ++ I +P + N PE +EVRGE Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT--S 247 + + K FL+LN+ M K +ANPRNAA+G +R L+ R L + +G+G Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + + Q+E++Q ++ GF +++ + A F + Y+++M R+ L YDIDGLV+KV+ Sbjct: 243 FVHPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQ +G AR P+W +++KF ++ + +L+++ Q+GRTG +TPVARL+PV +GG + Sbjct: 303 NIKLQDIIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN + IK +DIRVGDRV+V+RAG+VIP+VV + R DAQ Sbjct: 363 VSNATLHNINEIKR-----------KDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQM 411 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P+ CP+C S + + A +RCTGG C AQ ERLKHFVSR A +I+ LG Sbjct: 412 VEMPTNCPVCDSAI------ENVNDQAIYRCTGGWHCQAQTTERLKHFVSRKATDIDKLG 465 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ A I+ PADI+ L Q T + G S N+ DSI K + Sbjct: 466 AKLIEQLV----AANLIKYPADIYKLNFDQLTG------LERMGAKSSQNVLDSIKKSKT 515 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SL RFIF++GI+ +G + +LA ++ S ++F + LI + +G+I Sbjct: 516 PSLARFIFAIGIKDIGEVSSDALANHFGSLESFRDA----------KFEELIEINDIGEI 565 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +A IV F+ + NI VE LL + + E + K +V TG+ + R + Sbjct: 566 MANNIVSFWHDSLNIKIVEELLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ E+ LL Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVILEDNLKDLL 678 >gi|329924834|ref|ZP_08279795.1| DNA ligase (NAD+) [Paenibacillus sp. HGF5] gi|328940396|gb|EGG36721.1| DNA ligase (NAD+) [Paenibacillus sp. HGF5] Length = 670 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 210/715 (29%), Positives = 342/715 (47%), Gaps = 60/715 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L E++ ++ YY +P++ D EYDAL + A+ P+ P + Sbjct: 4 KEKMEKLIAELNNYNYHYYTLDQPLVSDKEYDALYDQLVALEAE----TGVTLPDSPTQR 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ----KKDDNSIF---FTL 130 +GGE+ H P SL+K NIE LR + R+ R K N + + L Sbjct: 60 VGGEILKGFAPHRHLAPLWSLDKAQNIEQLRTWHDRVVRLVNDYNTKNPGNPLPSPCYAL 119 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K DG + + Y+ GK V A+ RG+G GE + A ++ I ++P + IEV+GE Sbjct: 120 ELKFDGLTLNLTYQDGKLVQASTRGNGTVGEGILAQVKTIKSVPMTIPYT-EGTIEVQGE 178 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 ++ + N +P N RNAA+G LR LNP R LN + + +G + I Sbjct: 179 GIMNLSVLEQYNQTA----AEPLKNARNAAAGALRNLNPKVTAERKLNAYFYNVGYSDGI 234 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 EM+ +R VN + F ++ +++ RS L Y IDG V KV +F Sbjct: 235 TFADHKEMMDFLRENRLKVNPYIFYFEQFDDVMEQLADIEKRRSELDYLIDGAVVKVTDF 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +++ LG + PRW +++KF ++ +T L + +GRTG +TP+AR+EPV + G + Sbjct: 295 RIREALGYTDKFPRWAVAYKFEAEETTTVLQSVTWNVGRTGKITPLARVEPVELAGVTVQ 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 N TL+N G + R +G RV ++R+ +VIP+++ + E+ + Sbjct: 355 NCTLNNI---------GDIERKNLKFALGSRVFIRRSNDVIPEILGKVTEEQDGEE--IL 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 +P CP C + + A C C Q + R+ HF SRDA +IE + Sbjct: 404 YPEQCPSCGFPLEQR--------GAHLFCNNKTGCKPQIVARITHFASRDAMDIETFSDK 455 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + +R PAD++TL S + + FG+ NL D+I K + Sbjct: 456 TAIQLYDE----LGVREPADLYTL------SFDSLLKLERFGEKKAQNLLDAIEKSKERD 505 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L F+F+LGI + G + LA +Y L+ +P VG I+A Sbjct: 506 LASFLFALGIPNTGKSTTKMLADHYRDLNRVMAAT----------AEELVELPDVGGIVA 555 Query: 610 QAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++I ++ +P +++ +L + S K +V TGTL + R +A Sbjct: 556 ESIAGYFADPFAQASIQKMLSLGVQAKAPEAPKPVSTDSYFSGKTVVLTGTLHLLTREEA 615 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFLLQQ 720 E + LGA V+ +S+KTD++I G+ GSKL KAQQLG+ I+ +EE+F+ LL + Sbjct: 616 TERLEALGAKVTGSVSKKTDLLIAGEKAGSKLAKAQQLGIDILEDEEEFVRLLNE 670 >gi|261409569|ref|YP_003245810.1| NAD-dependent DNA ligase LigA [Paenibacillus sp. Y412MC10] gi|261286032|gb|ACX68003.1| DNA ligase, NAD-dependent [Paenibacillus sp. Y412MC10] Length = 670 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 210/715 (29%), Positives = 342/715 (47%), Gaps = 60/715 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L E++ ++ YY +P++ D EYDAL + A+ P+ P + Sbjct: 4 KEKMEKLIAELNNYNYHYYTLDQPLVSDKEYDALYDQLVALEAE----TGVTLPDSPTQR 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ----KKDDNSIF---FTL 130 +GGE+ H P SL+K NIE LR + R+ R K N + + L Sbjct: 60 VGGEILKGFAPHRHLAPLWSLDKAQNIEQLRTWHDRVVRLVNDYNTKNPGNPLPSPCYAL 119 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K DG + + Y+ GK V A+ RG+G GE + A ++ I ++P + IEV+GE Sbjct: 120 ELKFDGLTLNLTYQDGKLVQASTRGNGTVGEGILAQVKTIKSVPMTIPYA-EGTIEVQGE 178 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 ++ + N +P N RNAA+G LR LNP R LN + + +G + I Sbjct: 179 GIMNLSVLEQYNQTA----AEPLKNARNAAAGALRNLNPKVTAERKLNAYFYNVGYSDGI 234 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 EM+ +R VN + F ++ +++ RS L Y IDG V KV +F Sbjct: 235 TFADHKEMMDFLRENRLKVNPYIFYFEQFDDVMEQLADIEKRRSELDYLIDGAVVKVTDF 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +++ LG + PRW +++KF ++ +T L + +GRTG +TP+AR+EPV + G + Sbjct: 295 RIREVLGYTDKFPRWAVAYKFEAEETTTVLQSVTWNVGRTGKITPLARVEPVELAGVTVQ 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 N TL+N G + R +G RV ++R+ +VIP+++ + E+ + Sbjct: 355 NCTLNNI---------GDIERKNLKFALGSRVFIRRSNDVIPEILGKVTEEQDGEE--IL 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 +P CP C + + A C C Q + R+ HF SRDA +IE + Sbjct: 404 YPEQCPSCGFPLEQR--------GAHLFCNNKTGCKPQIVARITHFASRDAMDIETFSDK 455 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + +R PAD++TL S + + FG+ NL D+I K + Sbjct: 456 TAIQLYDE----LGVREPADLYTL------SFDSLLKLERFGEKKAQNLLDAIEKSKERD 505 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L F+F+LGI + G + LA +Y L+ +P VG I+A Sbjct: 506 LASFLFALGIPNTGKSTTKMLADHYRDLNRVMAAT----------AEELVELPDVGGIVA 555 Query: 610 QAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++I ++ +P +++ +L + S K +V TGTL + R +A Sbjct: 556 ESIAGYFADPFAQASIQKMLSLGVQAKAPEAPKPVSTDSYFSGKTVVLTGTLHLLTREEA 615 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFLLQQ 720 E + LGA V+ +S+KTD++I G+ GSKL KAQQLG+ I+ +EE+F+ LL + Sbjct: 616 TERLEALGAKVTGSVSKKTDLLIAGEKAGSKLAKAQQLGIDILEDEEEFVRLLNE 670 >gi|330751993|emb|CBL80506.1| DNA ligase [uncultured Polaribacter sp.] Length = 665 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 211/705 (29%), Positives = 354/705 (50%), Gaps = 46/705 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 +++ L ++++ H+ YY I D ++D + + + P S N P Sbjct: 3 VEEKIKELREQLNNHNYNYYVLDNATISDFDFDRTLKELEKLEKENPIFFNS---NSPTQ 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + + + H SL+ ++ EDL + R+ + + + FT E K DG Sbjct: 60 RVGGTVTKNFNTIVHKNRMYSLDNSYSKEDLLDWEKRVEKVLGV---SELEFTCELKFDG 116 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I + YE G+FV A RGDG G++V+ I+ I +IP + E+RGE+ + + Sbjct: 117 ASINLTYENGQFVKAVTRGDGFQGDEVTNNIKTIRSIPLSIKEEFISNFEMRGEIVLPID 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 F+ +N+E I G + Y NPRN ASG L+ + ++ + + T E K +E Sbjct: 177 GFIKMNEERILNGEEVYRNPRNTASGSLKLQDSGEVAKRPLDCLLYQMVTEERKYKTHFE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ R +GF V + A + + + N + R+ LPY+ DG+V KV+ Q++LG Sbjct: 237 SLENARKVGFKVPKTITLAKSIDAVFDFVNYWDAKRNDLPYETDGIVIKVNNLQQQEELG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A++PRW I++KF Q ST L +I Q+GRTG +TPVA L PV + G + A+LHN Sbjct: 297 YTAKAPRWAIAYKFKAAQVSTILNEITYQVGRTGAITPVANLNPVQLAGTTVKRASLHNA 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L DIR D V V++ GE+IPK++ + +R ++ P + + CP Sbjct: 357 DQIERL-----------DIREKDTVFVEKGGEIIPKIIAVDHTKRSENSAPTMYATNCPE 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + +VR A H C C+ Q R++H++SR A +I+GLG + +D K Sbjct: 406 CDTALVRTEG------DAKHYCPNEFGCAPQITGRIQHYISRKAMDIDGLGGETVDLLRK 459 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD++ L Q + + S N+ I K + I E+ +F+ Sbjct: 460 E----GLIQNYADLYDLNVAQII------PLERMAEKSAQNMISGIEKSKEIPFEKVLFA 509 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG +A+ LAK++ S + + LI+ +GD IAQ+I++F Sbjct: 510 LGIRFVGETVAKKLAKHFKSIDHLMTAT----------FEELIKADEIGDRIAQSILDFS 559 Query: 617 QNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + NI + L +N + ++ + V +G ++ R++ ++ + G Sbjct: 560 SDLGNIQLINRLKSYGLQLEVSAAVLENQTEILQGQIFVVSGVFYQMSRNELKKAIEDNG 619 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 VS+ +S+KT+ I+ GDN G SKL KAQ LG+ I++E+ F++ + Sbjct: 620 GKVSSSISKKTNFIVAGDNMGPSKLTKAQDLGISIISEQDFIYKI 664 >gi|56708436|ref|YP_170332.1| DNA ligase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670907|ref|YP_667464.1| DNA ligase [Francisella tularensis subsp. tularensis FSC198] gi|134301572|ref|YP_001121540.1| DNA ligase [Francisella tularensis subsp. tularensis WY96-3418] gi|187931418|ref|YP_001891402.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. mediasiatica FSC147] gi|224457588|ref|ZP_03666061.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. tularensis MA00-2987] gi|254875281|ref|ZP_05247991.1| DNA ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|81597232|sp|Q5NF60|DNLJ_FRATT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123063401|sp|Q14GL3|DNLJ_FRAT1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215759|sp|A4IWW8|DNLJ_FRATW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781335|sp|B2SFT1|DNLJ_FRATM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56604928|emb|CAG46020.1| DNA ligase [Francisella tularensis subsp. tularensis SCHU S4] gi|110321240|emb|CAL09403.1| DNA ligase [Francisella tularensis subsp. tularensis FSC198] gi|134049349|gb|ABO46420.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. tularensis WY96-3418] gi|187712327|gb|ACD30624.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. mediasiatica FSC147] gi|254841280|gb|EET19716.1| DNA ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|282159628|gb|ADA79019.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. tularensis NE061598] Length = 678 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 254/713 (35%), Positives = 391/713 (54%), Gaps = 54/713 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ + + + L +S Y+ KPII DS+YD L R + + P Sbjct: 14 LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N L+++GGE+ + H SL ++++E+LR F +I I E Sbjct: 71 NSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDIELECE 122 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG I+I Y+ GKF YA RGDG GE VS ++ I +P + N PE +EVRGE Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT--S 247 + + K FL+LN+ M K +ANPRNAA+G +R L+ R L + +G+G Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 ++ + Q+E++Q ++ GF +++ + A F + Y+++M R+ L YDIDGLV+KV+ Sbjct: 243 FVYPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQ +G AR P+W I++KF ++ + +L+++ Q+GRTG +TPVARL+PV +GG + Sbjct: 303 NIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN + IK +DIRVGDRV+V+RAG+VIP+VV + R DAQ Sbjct: 363 VSNATLHNINEIKR-----------KDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQM 411 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P+ CP+C S++ + A +RCTGG C AQ ERLKHFVSR A +I+ LG Sbjct: 412 VEMPTNCPVCDSKI------ENVNDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ A I+ PADI+ L Q T + S N+ DSI K + Sbjct: 466 AKLIEQLV----AANLIKYPADIYKLNFEQLTG------LERMAAKSSQNVLDSITKSKE 515 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SL RFIF++GI+ +G + +LA ++ S ++F + LI + +G+I Sbjct: 516 PSLARFIFAIGIKDIGEVSSDALANHFGSLESFRDA----------KFEELIEINDIGEI 565 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +A IV F+ + NI VE L + + E + K +V TG+ + R + Sbjct: 566 MANNIVSFWHDSLNIKIVEEFLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ E+ LL Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVILEDNLKDLL 678 >gi|289644234|ref|ZP_06476323.1| DNA ligase, NAD-dependent [Frankia symbiont of Datisca glomerata] gi|289505957|gb|EFD26967.1| DNA ligase, NAD-dependent [Frankia symbiont of Datisca glomerata] Length = 713 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 218/694 (31%), Positives = 341/694 (49%), Gaps = 48/694 (6%) Query: 30 YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89 H YY P + D+EYD L + +P L P+ P K+ G ++ V Sbjct: 41 EHAFRYYVLDSPTVSDAEYDQLMAELTQLETRYPGL---RTPDSPTQKVAGTISTLFTPV 97 Query: 90 THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149 H LSL+ ++ + + R+ R + + E KIDG + + YE G Sbjct: 98 EHLERLLSLDNVFTEVEFEAWAARVTREAEVDA-----WLCELKIDGLAVDLVYEDGYLA 152 Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAV 208 AA RGDG +GEDV+ IR + +P L ++PE++EVRGEV+ F LN ++A Sbjct: 153 RAATRGDGRTGEDVTPNIRTLAAVPGRLRGGSVPELLEVRGEVFFPTAAFTELNATLVAA 212 Query: 209 GRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFP 267 G KP+ANPRNAA+G LR+ +P R L+ +HGLG Q + Q+M LG P Sbjct: 213 GDKPFANPRNAAAGSLRQKDPRVTAGRPLSMIMHGLGAHRGFDVTSQSDAYQRMAELGLP 272 Query: 268 VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327 V+ + + ++ R + ++IDG+V KVD F LQ++LG ++SPRW ++ Sbjct: 273 VSRHHEVLASVAEVEAFVRRWGEHRHDVEHEIDGVVVKVDAFGLQRRLGATSKSPRWAVA 332 Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387 +K+ ++ +TRLL I++ +GRTG +TP RLEPV + G+ + ATLHN D ++ Sbjct: 333 YKYPPEEVTTRLLGIEVNVGRTGRVTPFGRLEPVRVAGSTVALATLHNADQVER------ 386 Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447 + + +GD V++++AG+VIP++V +V+ R + F P+ CP C + +VR Sbjct: 387 -----KGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGSERAFVMPTHCPECGTELVRPEGE 441 Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507 RC ++C AQ E L HF SR A +I+G G + + A +R Sbjct: 442 ------VDVRCPNTVSCPAQLRESLFHFASRGALDIDGFGYETATALLE----AGRVRDV 491 Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567 D+F L + GF + + + R L R + L IRHVG A Sbjct: 492 GDVFHLTAE------SFAELRGFAKKKIDQILRGVEAARQQPLWRLLVGLSIRHVGPSAA 545 Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 R+LA+ S A +L V VG IA ++V+++ +PR+ +E Sbjct: 546 RALAREMRSVDAIAAA----------STETLAAVDGVGPTIAASVVDWFADPRHQDILER 595 Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 + + + + +V TGTL R A E V G V+A +S+KT Sbjct: 596 IRSGGARFADAGADDGPGPLTGVTVVITGTLAGWSRDSATEAVQARGGKVTASVSKKTAF 655 Query: 688 IIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++VG +PG SK +KA+ + I++E F LL+Q Sbjct: 656 VVVGADPGASKYDKARAWKLSILDEAGFAVLLEQ 689 >gi|118497929|ref|YP_898979.1| DNA ligase [Francisella tularensis subsp. novicida U112] gi|194323151|ref|ZP_03056935.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. novicida FTE] gi|166215758|sp|A0Q7L0|DNLJ_FRATN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|118423835|gb|ABK90225.1| DNA ligase [Francisella novicida U112] gi|194322515|gb|EDX19995.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. novicida FTE] Length = 678 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 255/713 (35%), Positives = 390/713 (54%), Gaps = 54/713 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ + + + L +S Y+ KPII DS+YD L R + + P Sbjct: 14 LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N L+++GGE+ + H SL ++++E+LR F +I I E Sbjct: 71 NSVLDRVGGEVLAEFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDIELECE 122 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG I+I Y+ GKF YA RGDG GE VS ++ I +P + N PE +EVRGE Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT--S 247 + + K FL+LN+ M K +ANPRNAA+G +R L+ R L + +G+G Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + + Q+E++Q ++ GF +++ + A F + Y+++M R+ L YDIDGLV+KV+ Sbjct: 243 FVHPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQ +G AR P+W +++KF ++ + +L+++ Q+GRTG +TPVARL+PV +GG + Sbjct: 303 NIKLQDIIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN + IK +DIRVGDRV+V+RAG+VIP+VV + R DAQ Sbjct: 363 VSNATLHNINEIKR-----------KDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQM 411 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P+ CP+C S + + A +RCTGG C AQ ERLKHFVSR A +I+ LG Sbjct: 412 VEMPTNCPVCDSAI------ENVNDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ A I+ PADI+ L Q T + G S N+ DSI K + Sbjct: 466 AKLIEQLV----AANLIKYPADIYKLNFDQLTG------LERMGAKSSQNVLDSIKKSKT 515 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SL RFIF++GI+ +G + LA ++ S ++F + LI + +G+I Sbjct: 516 PSLARFIFAIGIKDIGEVSSDVLANHFGSLESFRDA----------KFEELIEINDIGEI 565 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +A IV F+ + NI VE LL + + E + K +V TG+ + R + Sbjct: 566 MANNIVSFWHDSLNIKIVEELLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ E+ LL Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVILEDNLKDLL 678 >gi|254373281|ref|ZP_04988769.1| hypothetical protein FTCG_00864 [Francisella tularensis subsp. novicida GA99-3549] gi|151571007|gb|EDN36661.1| hypothetical protein FTCG_00864 [Francisella novicida GA99-3549] Length = 678 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 255/713 (35%), Positives = 391/713 (54%), Gaps = 54/713 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ + + + L +S Y+ KPII DS+YD L R + + P Sbjct: 14 LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N L+++GGE+ + H SL ++++E+LR F +I I E Sbjct: 71 NSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDIELECE 122 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG I+I Y+ GKF YA RGDG GE VS ++ I +P + N PE +EVRGE Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT--S 247 + + K FL+LN+ M K +ANPRNAA+G +R L+ R L + +G+G Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + + Q+E++ ++ GF +++ + A F + Y+++M R+ L YDIDGLV+KV+ Sbjct: 243 FVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQ +G AR P+W +++KF ++ + +L+++ Q+GRTG +TPVARL+PV +GG + Sbjct: 303 NIKLQDIIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN + IK +DIRV DRV+V+RAG+VIP+VV + R PDAQ Sbjct: 363 VSNATLHNINEIKR-----------KDIRVSDRVIVRRAGDVIPEVVKSLPQYRKPDAQV 411 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P+ CP+C S + + A +RCTGG C AQ ERLKHFVSR A +I+ LG Sbjct: 412 VEMPTSCPVCDSAI------ENVNDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ A I+ PADI+ L Q T + G S N+ DSI K + Sbjct: 466 AKLIEQLV----AANLIKYPADIYKLNFDQLTG------LERMGAKSSQNVLDSITKSKE 515 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SL RFIF++GI+ VG + +LA ++ S ++F + + LI + +G+I Sbjct: 516 PSLARFIFAIGIKDVGEVSSEALANHFGSLESFREA----------KFEQLIEINDIGEI 565 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +A IV F+ + NI VE LL + + E + K +V TG+ + R + Sbjct: 566 MANNIVSFWHDSLNIKIVEELLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ E+ LL Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVILEDNLKDLL 678 >gi|332184463|gb|AEE26717.1| DNA ligase [Francisella cf. novicida 3523] Length = 678 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 260/713 (36%), Positives = 393/713 (55%), Gaps = 54/713 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ + + + L +S Y+ KPII DS+YD L R + P + Sbjct: 14 LAKPELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVDDNPQFKPT--- 70 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N L+++GGE+ + H SL ++ IE+LR F +I I E Sbjct: 71 NSVLDRVGGEVLAGFETIKHKKKMTSLVNVFTIEELRDFYDKIE--------YEIELECE 122 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG I+I Y+ GKF YA RGDG GE VS ++ I +P ++N PE +EVRGE Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTINPPEELEVRGE 182 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT--S 247 + + K FL+LN+ M K +ANPRNAA+G +R L+ R L F +G+G Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLFSYGIGYFSKD 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + + Q+E++Q +R GF +++ + A +F + Y+ +M R+ L YDIDGLV+KV+ Sbjct: 243 FVHPETQFELMQLLRSFGFTISDNMFLAKSFSEVEEYHRKMSHQRADLAYDIDGLVFKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQ +G AR P+W +++KF ++ + +L+++ Q+GRTG +TPVARL+PV +GG + Sbjct: 303 NIKLQDTIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVM 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN + IK +DIRV DRV+V+RAG+VIP+VV + R PDAQ Sbjct: 363 VSNATLHNINEIKR-----------KDIRVSDRVIVRRAGDVIPEVVKSLPQYRKPDAQI 411 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P CP+C S + + A +RCTGG C AQ ERLKHFVSR A +I+ LG Sbjct: 412 VEMPKNCPVCDSTIENIND------QAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ A I+ PADI+ L Q T + G S N+ DSI K + Sbjct: 466 AKLIEQLV----AADLIKYPADIYKLNFEQLTG------LKRMGAKSSQNVLDSITKSKE 515 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SL RFIF++GI+ +G + +LA ++ S ++F + + LI + +G+I Sbjct: 516 PSLARFIFAIGIKDIGEVSSEALANHFGSLESFREA----------KFEQLIEINDIGEI 565 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +A IV F+Q+ NI V+ LL + + E+ + NK +V TGT + R + Sbjct: 566 MANNIVSFWQDSLNIQIVDELLANAINIQNPEKIEQAHNESFTNKTVVITGTFENYNRTE 625 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + +GA V++ +S+KTD++I GDN GSKL KAQ+LGV ++ E+ LL Sbjct: 626 LTQLLKSMGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVTVILEQDLQNLL 678 >gi|254368889|ref|ZP_04984902.1| DNA ligase [Francisella tularensis subsp. holarctica FSC022] gi|157121810|gb|EDO65980.1| DNA ligase [Francisella tularensis subsp. holarctica FSC022] Length = 678 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 254/713 (35%), Positives = 391/713 (54%), Gaps = 54/713 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ + + + L +S Y+ KPII DS+YD L R + + P Sbjct: 14 LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N L+++GGE+ + H SL ++++E+LR F +I I E Sbjct: 71 NSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDIELECE 122 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG I+I Y+ GKF YA RGDG GE VS ++ I +P + N PE +EVRGE Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT--S 247 + + K FL+LN+ M K +ANPRNAA+G +R L+ R L + +G+G Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 ++ + Q+E++Q ++ GF +++ + A F + Y+++M R+ L YDIDGLV+KV+ Sbjct: 243 FVYPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQ +G AR P+W I++KF ++ + +L+++ Q+GRTG +TPVARL+PV +GG + Sbjct: 303 NIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN + IK +DIRVGDRV+V+RAG+VIP+VV + R DAQ Sbjct: 363 VSNATLHNINEIKR-----------KDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQI 411 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P+ CP+C S++ + A +RCTGG C AQ ERLKHFVSR A +I+ LG Sbjct: 412 VEMPTNCPVCDSKI------ENVNDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ A I+ PADI+ L Q T + S N+ DSI K + Sbjct: 466 AKLIEQLV----AANLIKYPADIYKLNFEQLTG------LERMAAKSSQNVLDSITKSKE 515 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SL RFIF++GI+ +G + +LA ++ S ++F + LI + +G+I Sbjct: 516 PSLARFIFAIGIKDIGEVSSDALANHFGSLESFRDA----------KFEELIEINDIGEI 565 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +A IV F+ + NI VE L + + E + K +V TG+ + R + Sbjct: 566 MANNIVSFWHDSLNIKIVEEFLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ E+ LL Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVILEDNLKDLL 678 >gi|212703192|ref|ZP_03311320.1| hypothetical protein DESPIG_01234 [Desulfovibrio piger ATCC 29098] gi|212673458|gb|EEB33941.1| hypothetical protein DESPIG_01234 [Desulfovibrio piger ATCC 29098] Length = 729 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 247/728 (33%), Positives = 384/728 (52%), Gaps = 60/728 (8%) Query: 8 PIEALSI-----EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 P + LS+ ++ ++ ++ L + +H+ Y+ KP+I D +YDAL R A+ + Sbjct: 43 PADPLSLPEPPRDRPQERMAWLTTILEHHNYLYHTLDKPVISDDQYDALFRELKALEEDY 102 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P P+ P ++GG + L K H L+ +++ E+ ++F+ R+ R + Sbjct: 103 PQW---RSPHSPTLRVGGGLLGGLPKQRHRQRMYGLDNVFSAEEWQEFVARMQRALPEA- 158 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--N 180 + F +PK+DG + I YE G A RGDG GE V+ +R I T+P L Sbjct: 159 --PLAFWCDPKLDGLALEIIYEDGVLQQALTRGDGEEGEVVTEAVRTIRTVPLRLRGTGP 216 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFF 239 PE +EVRGEV I K DF A+N+ ++G+K ANPRNAA+G LR+L+ + + F Sbjct: 217 FPERLEVRGEVVIYKKDFAAINERRESLGQKLLANPRNAAAGALRQLDVANTQQMPLRFL 276 Query: 240 VHGLG---KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296 + LG Q+E+ ++R GF + + +Y ++ R+ P Sbjct: 277 AYSLGEARWGQAEPCHFQHELAARLRDYGFLTPPDGKLCADPAAVEAYVESVRQGRADFP 336 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 +IDG V K D+ Q+ LG AR+PR+ I+ KF Q TRL I+IQ+GRTG+LTPVA Sbjct: 337 MEIDGAVAKQDDLEAQEALGFTARAPRFAIAFKFPAMQVHTRLTGIEIQVGRTGVLTPVA 396 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 +LEPV +GG ++T ATLHNED I +D+RVGD V+V+RAG+VIP+VV Sbjct: 397 QLEPVAVGGVMVTRATLHNEDEI-----------LAKDVRVGDTVIVQRAGDVIPEVVGP 445 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 ++ ER A+PF FP CP+C R+ AA RC G ++C A +L + HFV Sbjct: 446 VLEERPSGARPFEFPHICPVCGEPAHREPGE------AAWRC-GNISCPAVRLRSICHFV 498 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 S+ +++G+G++ ++ S + P +F L + + GDV Sbjct: 499 SKAGLDVQGVGQKWIEQLVSS----GHVTSPKQLFRL------TVQDLLPFDRMGDVLAR 548 Query: 537 NLYDSINKRRNISL-ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 + D+ + R+ + R I +LGIRHVG + AR LA ++ A D Sbjct: 549 KIVDAFDDARHNATLARLISALGIRHVGEQTARMLAAHFYDMDALAAA----------DT 598 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKL 652 L+ +P VG +A +I F+++P N + L + + E ++ ++ K + Sbjct: 599 QRLLELPDVGPEVASSIRSFFESPANQHMLAGLREAGLWPVAAAEPAEAAGEGPLQGKNI 658 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 +FTGTL + R KA++ GAVV +S+K DI++VG+NPGSKLEKAQ LG+ +++E Sbjct: 659 LFTGTLS-MARGKAKQLAEAAGAVVLGSVSKKLDILVVGENPGSKLEKAQSLGITVLDEA 717 Query: 713 QFLFLLQQ 720 FL LL Sbjct: 718 AFLDLLAD 725 >gi|328956034|ref|YP_004373367.1| DNA ligase, NAD-dependent [Coriobacterium glomerans PW2] gi|328456358|gb|AEB07552.1| DNA ligase, NAD-dependent [Coriobacterium glomerans PW2] Length = 752 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 235/753 (31%), Positives = 362/753 (48%), Gaps = 79/753 (10%) Query: 8 PIEALSIEQA---RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 P ++ A + L + + YH YY P I D+++D L R I PD Sbjct: 32 PAGHMTSTAAVPPAERAEELRRLLDYHAYRYYALDAPEISDAQFDRLLRELQQIEVEHPD 91 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 L P+ ++GG ++ +TH S++ ++++L ++ R+ Sbjct: 92 LI---TPDSYTQRVGGFVSGQFAPITHMARMYSIDDAMDLDELDAWLDRVESALGA---G 145 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-------- 176 S +T E KIDG + + Y GKFV AA RGDG+ GEDVS IR I +P Sbjct: 146 SAVYTCELKIDGLGVALTYRSGKFVRAATRGDGYVGEDVSRNIRTIADVPMRLSTEAVER 205 Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRY 235 + + E IEVRGEVY+ K F LN A GR P+ANPRNAA+G LR+ +P R Sbjct: 206 MGDDASEAIEVRGEVYMPKGSFARLNATADAEGRPPFANPRNAAAGSLRQKDPAVTARRD 265 Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295 L+ F++ L T+ + Q E L +R GF VN V + + + + + + R L Sbjct: 266 LSTFMYALADTAPVHVTSQLEFLDWLREAGFHVNPNVARCASPAQVHDFCADALAHRGGL 325 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 YDIDG+V KVD F LQ++LG AR+PRW I+ KF ++ T L +I IQ+GRTG+LTPV Sbjct: 326 DYDIDGVVVKVDSFELQERLGFTARAPRWAIAFKFPPEERRTVLREIRIQVGRTGVLTPV 385 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 A+ +PV++ G+ I ATLHN D I+ +D+RVGD ++V +AG+VIP+VV Sbjct: 386 AQFDPVSVAGSTIARATLHNIDEIER-----------KDVRVGDTIIVHKAGDVIPEVVG 434 Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475 +++ R A+P+ P CP C + VVR+ + L C AQ ERL H+ Sbjct: 435 PVLDLRADGARPYQMPDRCPACGNPVVREPGQVAIR-------CVSLDCPAQLHERLLHW 487 Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS- 534 VSR +++G+G + +D A +R AD +TL Q + Sbjct: 488 VSRGCMDVDGVGAELVDKLVD----AGLVRDVADFYTLTSEQIAALDTGRVYQKTVAKKG 543 Query: 535 -------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 + D +++ ++ L R +F+LGIRHVG + LA+++ S + Sbjct: 544 VRAGDPILVGKTVADKIADELDRSKSRPLGRVLFALGIRHVGKSVGELLARHFGSIEALI 603 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP------S 635 + + + +G IA + F+ P N+ + L + Sbjct: 604 EANE----------EEIAGIDGIGPKIASSTKMFFSVPENLQVLSRLREAGVGTQEGSGE 653 Query: 636 IGRHEKNVSS---------EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 + E S +E V TG+L+ R +A + LGA V+ +S++T Sbjct: 654 VEAREAEESGVSVELARQRPLEGLTFVLTGSLEHRTRDQAAAALVALGARVAGSVSKRTS 713 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +I G GSKL KA LG+ +++E + +L Sbjct: 714 FVIAGPGAGSKLTKAASLGIAVLDERELERILA 746 >gi|77409440|ref|ZP_00786135.1| DNA ligase, NAD-dependent [Streptococcus agalactiae COH1] gi|77171952|gb|EAO75126.1| DNA ligase, NAD-dependent [Streptococcus agalactiae COH1] Length = 643 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 218/686 (31%), Positives = 354/686 (51%), Gaps = 51/686 (7%) Query: 33 DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHS 92 YY P + DS+YD L R + P+ PN P +++GG + K H Sbjct: 8 KEYYTQDNPTVSDSQYDQLYRELVELEEQHPENIL---PNSPTHRVGGLVLEGFEKYQHE 64 Query: 93 IPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152 P SL+ ++ E+L F R+ + + + E KIDG +++ Y G A Sbjct: 65 YPLYSLQDAFSKEELIAFDKRVK-----AEFPTASYMAELKIDGLSVSLTYVNGILQVGA 119 Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 RGDG+ GE+++ ++ + IP L L+ I VRGE Y+ K F A+N E A G + Sbjct: 120 TRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYLPKESFEAINIEKRANGEQE 177 Query: 213 YANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 +ANPRNAA+G LR+LN + + S + Q ++L+++ GF VN+ Sbjct: 178 FANPRNAAAGTLRQLNTGIV-AKRKLATFLYQEASPTQKETQDDVLKELESYGFSVNHHR 236 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 +++ I + ++ R +LPYDIDG+V KV+ ++Q++LG ++PRW I++KF Sbjct: 237 LISSSMEKIWDFIQTIEKDRISLPYDIDGIVIKVNSLAMQEELGFTVKAPRWAIAYKFPA 296 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 ++ +L +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 297 EEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------AE 345 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 +DIR+GD V+V +AG++IP V+++++++R+ P CP C S +V + Sbjct: 346 KDIRIGDTVVVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSCGSELVHFEDE----- 399 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512 A RC L C Q ERL HF SRDA NI G G ++ F A I ADI+ Sbjct: 400 -VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVEKLFD----AHLIADVADIYR 453 Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572 L + + G + S T +Y +I + S E+ +F LGIRHVG++ +R L + Sbjct: 454 LSIEDLLT------LDGIKEKSATKIYHAIQSSKENSAEKLLFGLGIRHVGSKASRLLLE 507 Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE- 631 + + + +Q S+ + +G +IA+++ F++ +E L Sbjct: 508 EFGNLRQLSQASQ----------ESIASIDGLGGVIAKSLHTFFEKEEVDKLLEELTSYN 557 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 V+ + + +++ +V TG L+K+ R++A+E + LGA V+ +S+KTD+I+ G Sbjct: 558 VNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEKLQNLGAKVTGSVSKKTDLIVAG 617 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFL 717 + GSKL KAQ LG+ I +E+ L L Sbjct: 618 SDAGSKLTKAQDLGITIQDEDWLLNL 643 >gi|254670337|emb|CBA05747.1| DNA ligase [Neisseria meningitidis alpha153] Length = 841 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 251/838 (29%), Positives = 382/838 (45%), Gaps = 159/838 (18%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + + L ++ + YY P + D+EYD L R +A+ P+L P+ P Sbjct: 26 AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQ 82 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127 ++GGE +V H +P LSL ++ + ++ F R+ D Sbjct: 83 RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGKPE 139 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186 + +EPK DG I++ Y G V AA RGDG +GEDV+ I+ + IP L PE+IE Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245 VRGEV + K DF ALN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259 Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303 A+ + L + LGF + NG V + E + PY+IDG+V Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYERMQQKRPKLPYEIDGMV 319 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV+ + Q++LG +R+PRW I+HKF ++A T + ID+QIGRTG +TPVARL+PV + Sbjct: 320 VKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428 Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451 +P+ P+ CPIC+S + R+ Sbjct: 429 QETAVAVSDGIGHRQDDLFAEAPAANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA-DI 510 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + + DI Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVRHFADLYRLDI 542 Query: 511 FTLQRRQQTSTTKIENILGFG----------------DVSVTNLYDSINKRRNISLERFI 554 TLQ+ ++T+ + N+ I + L RF+ Sbjct: 543 PTLQKMKETTDKTVAESEQMPSEGSSVGASGKHKKPPTKWAENILAGIESGKTPELARFL 602 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD-------------------- 594 F+LGIRHVG A++LA+ + + + + ++A D Sbjct: 603 FALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAEQQAM 662 Query: 595 WLSLIR--------------------------VPL--VGDIIAQAIVE------------ 614 L+ +P + + AQA+ E Sbjct: 663 IDELLAAGIAPQTQAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEGLQTD 722 Query: 615 ---------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGTLQK 660 + P+N +E L + E S + K V TGTL Sbjct: 723 KALPTDWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINEAVAGKTFVLTGTLPT 782 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L LL Sbjct: 783 LKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 840 >gi|322382981|ref|ZP_08056811.1| NAD-dependent DNA ligase LigA-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153004|gb|EFX45464.1| NAD-dependent DNA ligase LigA-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 673 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 205/713 (28%), Positives = 338/713 (47%), Gaps = 62/713 (8%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L +EI+ H+ YY +P I D EYDAL R + + + PN P ++GG Sbjct: 8 MKILIEEINKHNYHYYTLDEPTITDQEYDALYDRLLKLEKE----SGTVLPNSPTLRVGG 63 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-------NSIFFTLEPK 133 ++ H SL+K +IE L+ + R+ + + F +E K Sbjct: 64 DILKGFEPHRHRSRLWSLDKAQSIEVLKNWHNRVQKLVNDYNSKNPSTPLPEPSFAVELK 123 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 DG I + Y++G V A+ RG+G GE + A ++ I ++P + +IEV+GE + Sbjct: 124 FDGLTINLTYDQGNLVQASTRGNGVVGEGILAQVKTIKSVPLEIPYK-EGLIEVQGEGMM 182 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + N +P N RNAA+G LR LNP R L F + +G + Sbjct: 183 LLSVLDQYNQTA----AEPLKNARNAAAGALRNLNPKVTAERRLTAFFYNVGFSDRKQFM 238 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 EM+ ++ F VN V+ NT + +++ R + IDG V KV + + Sbjct: 239 NHQEMIAFLKENHFKVNPYVKYFNTIDEVFEEMKKLEQERHDFDFLIDGAVIKVTDIRTR 298 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG + PRW I++KF ++ +T L + ++GRTG +TPVA++EPV + G + N T Sbjct: 299 EVLGYTEKFPRWAIAYKFEAEEVTTVLEGVSWEVGRTGKITPVAKVEPVELAGVTVQNCT 358 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 L+N I+ + +G V ++R+ +VIP+++ + E + +P Sbjct: 359 LNNIGDIERKNLKHA---------LGSLVYIRRSNDVIPEILGKVTEEIDGEE--IKYPE 407 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + + + A C L C Q + R+ HF SRDA +IE + Sbjct: 408 HCPACGTELEQR--------GAHLFCPNRLGCKPQLIGRITHFASRDAMDIETFSVMTAE 459 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++ D +R PAD++ L + FG+ NL D+I K + L Sbjct: 460 QLYQQLD----VRDPADLYDLTYDDII------QLPRFGEKKANNLLDAIEKSKERDLSS 509 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+F+LGI + G + LA+++ S + LI +P VG I+A +I Sbjct: 510 FLFALGIPNTGKTTTKVLAEHFRSLDKVMDAV----------VEELIALPDVGGIVADSI 559 Query: 613 VEFYQNPRNICAVEALLKEVSP-----SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F+++P I ++ + K G+ E + K +V TGTL + R +A Sbjct: 560 YTFFRDPIMIESIRRMKKAGVQAQMEAEEGKAEIDPGHPFYGKTIVLTGTLSSMSRDEAA 619 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN-EEQFLFLLQ 719 + + LGA V+ +S+KTDI+I G+N GSKL KA+QLG+++++ E++ L LL Sbjct: 620 KKLESLGAKVTGSVSKKTDIVIAGENAGSKLAKAEQLGIRVIDNEDELLHLLD 672 >gi|332678645|gb|AEE87774.1| DNA ligase [Francisella cf. novicida Fx1] Length = 678 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 254/713 (35%), Positives = 388/713 (54%), Gaps = 54/713 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ + + + L +S Y+ KPII DS+YD L R + + P Sbjct: 14 LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N L+++GGE+ + H SL ++++E+LR F +I I E Sbjct: 71 NSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYGKIE--------YDIELECE 122 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG I+I Y+ GKF YA RGDG GE VS ++ I +P + N PE +EVRGE Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT--S 247 + + K FL+LN+ M K +ANPRNAA+G +R L+ R L + +G+G Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + + Q+E++ ++ GF +++ + A F + Y+++M R+ L YDIDGLV+KV+ Sbjct: 243 FVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQ +G AR P+W +++KF ++ + +L+++ Q+GRTG +TPVARL+PV +GG + Sbjct: 303 NIKLQDIIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN + IK +DIRV DRV+V+RAG+VIP+VV + R PDAQ Sbjct: 363 VSNATLHNINEIKR-----------KDIRVSDRVIVRRAGDVIPEVVKSLPQYRKPDAQV 411 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P+ CP+C S + + A +RCTGG C AQ ERLKHFVSR A +I+ LG Sbjct: 412 VEMPTSCPVCDSAI------ENVNDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ A I+ PADI+ L Q T + G S N+ DSI K + Sbjct: 466 AKLIEQLV----AANLIKYPADIYKLNFDQLTG------LERMGAKSSQNVLDSIKKSKT 515 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SL RFIF++GI+ +G + LA ++ S ++F + LI + +G+I Sbjct: 516 PSLARFIFAIGIKDIGEVSSDVLANHFGSLESFRDA----------KFEELIEINDIGEI 565 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +A IV F+ + NI VE LL + + E + K +V TG+ + R + Sbjct: 566 MANNIVSFWHDSLNIKIVEELLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + +GA V++ +S+KTD++I G+N GSKL KAQ LGV+++ EE LL Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGENAGSKLTKAQDLGVEVIFEEDLQNLL 678 >gi|256832938|ref|YP_003161665.1| DNA ligase, NAD-dependent [Jonesia denitrificans DSM 20603] gi|256686469|gb|ACV09362.1| DNA ligase, NAD-dependent [Jonesia denitrificans DSM 20603] Length = 798 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 213/758 (28%), Positives = 358/758 (47%), Gaps = 89/758 (11%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +++ L + I + YY + + D++YDAL A+ P + Sbjct: 54 QEQWERLARLIQRYQFEYYIQGESSVPDADYDALLAELVAVEEQ----LGGAPQGSPTQR 109 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + +V H P LSL+ +++E+L+ + R++ + ++ + E KIDG Sbjct: 110 VGGTFSTEFEEVDHRQPMLSLDNAFSLEELQAWADRVH---GELSGGAVSYLCEVKIDGL 166 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGEVYIS 194 +++ YE+G+ V A RGDG +GEDV+ ++ I +IP+ L P+++E+RGEV++ Sbjct: 167 AVSLTYERGELVRALTRGDGQTGEDVTLNVQTIRSIPQRLGGDPAFHPQVVEIRGEVFMK 226 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI---- 249 DF LND G K +ANPRNAA+G LR+ +P R L+ + HG+G Sbjct: 227 VADFADLNDSQARQGGKTFANPRNAAAGSLRQKDPRVTAQRRLSMYAHGIGALEWDGQSP 286 Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q ++ + G PV++ + + + R ++ +++DG V KVDE Sbjct: 287 VDLARQSDVYALYQQWGIPVSSHNSVEHDLDAVTRKIEYYRENRHSIEHELDGFVIKVDE 346 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + QKQLG +R+PRW I+ K+ ++ +TRLLDI + +GRTG +TP +EPV + G+ + Sbjct: 347 VAAQKQLGSTSRAPRWAIAFKYPPEEVTTRLLDIQVNVGRTGRVTPFGMMEPVLVAGSTV 406 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHN ++ +D+R GD V+V++AG+VIP+++ + + R + Sbjct: 407 SMATLHNFHEVRR-----------KDVRPGDTVIVRKAGDVIPEILGAVESLRPDGLPQW 455 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C + + + + RC +C +Q ER+ SR AF+IE LG Sbjct: 456 EPPTHCPSCGTEIR-----EAKEGDKDLRCPNAQSCPSQLRERVFALASRGAFDIEALGW 510 Query: 489 QQLDFFFKSE--------------------------------DPAFSIRIPADIFTLQRR 516 + E + + R D+ + R Sbjct: 511 ESAVALCDPESSRPVGPDAPQLDGPPLTPVLTSEAHIFDLADENSSLTRSLKDVVVWRER 570 Query: 517 QQTSTTKIENILGFGDV-----------SVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 + S T+ E + F + L++ + K ++ L R + +L IRHVG Sbjct: 571 KLKSGTRWELVPYFYTRATASKSSVPTATTVKLFEEVQKAKSQPLWRVLVALSIRHVGPT 630 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ----NPRN 621 AR+LA + S L V VG IA+++VE+++ N Sbjct: 631 AARALATEFGSMDRIRAA----------SVSELAAVDGVGSTIAESVVEWFREVDGNQWR 680 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 V A K +++V +E +V TG L+ R +E + G S + Sbjct: 681 PAIVAAWAKAGVSMEDIPDESVQRTLEGITVVVTGGLENFTRDGVKEAIVARGGKASGSV 740 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 S+KTD ++VG N GSK KA++LG++I+NEE+F LL Sbjct: 741 SKKTDFVVVGANAGSKETKARELGLRILNEEEFTRLLA 778 >gi|325137931|gb|EGC60506.1| DNA ligase, NAD-dependent [Neisseria meningitidis ES14902] Length = 841 Score = 485 bits (1249), Expect = e-134, Method: Composition-based stats. Identities = 249/842 (29%), Positives = 379/842 (45%), Gaps = 167/842 (19%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + + L ++ + YY P + D+EYD L R +A+ P+L P+ P Sbjct: 26 AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQ 82 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127 ++GGE +V H +P LSL ++ + ++ F R+ D Sbjct: 83 RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGKPE 139 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186 + +EPK DG I++ Y G V AA RGDG +GEDV+ I+ + IP L PE+IE Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVANIPLRLHGENTPELIE 199 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245 VRGEV + K DF ALN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259 Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303 A+ + L + LGF + NG V + E + PY+IDG+V Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMV 319 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV+ + Q++LG +R+PRW I+HKF ++A T + ID+QIGRTG +TPVARL+PV + Sbjct: 320 VKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428 Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451 +P+ P+ CPIC+S + R+ Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538 Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550 L + + N+ I + L Sbjct: 539 RLDIPTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPVKWAENILAGIEASKTPEL 598 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD---------------- 594 RF+F+LGIRHVG A++LA+ + + + + ++A D Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658 Query: 595 ----WLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614 L+ +P + + AQA+ E Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEG 718 Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656 + P+N +E L + E S + K V TG Sbjct: 719 LQTDKALPTDWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838 Query: 717 LL 718 LL Sbjct: 839 LL 840 >gi|297156986|gb|ADI06698.1| NAD-dependent DNA ligase LigA [Streptomyces bingchenggensis BCW-1] Length = 728 Score = 485 bits (1249), Expect = e-134, Method: Composition-based stats. Identities = 221/737 (29%), Positives = 350/737 (47%), Gaps = 62/737 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +AR + + L +++ H YY PI+ D+E+D R + + P+ Sbjct: 10 PAEARDKHAILAEQVEEHRFRYYVKDAPIVSDAEFD---RLLRELEALEEEYTELRTPDS 66 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+ G +V H LSL+ ++ E+L + RI R D+ F E K Sbjct: 67 PTQKVAGAYETEFTEVEHRERMLSLDNAFDGEELAAWAERIVRELG---DSGYHFLCELK 123 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG + + YE+G+ AA RGDG +GED++ +R I IP L + PE++EVRGEVY Sbjct: 124 VDGLAVNLTYERGRLTRAATRGDGRTGEDITPNVRTISVIPDRLKGDRIPELVEVRGEVY 183 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 F LN ++ G+ P+ANPRNAA+G LR+ +P +R L VHG+G Sbjct: 184 FPGARFEELNARLVEAGKPPFANPRNAAAGSLRQKDPKVTASRPLRMVVHGIGAREGFDI 243 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS--IRSTLPYDIDGLVYKVDEF 309 Q + + + G P + ++ + Y R +L ++IDG+V K+DE Sbjct: 244 DRQSQAYELLHEWGLPTAAHFKVVDSLDAVSEYIAYYGDPKRRHSLEHEIDGVVVKLDEI 303 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ +LG +R+PRW I+ KF ++ +T+L+DI + +GRTG +TP A +EPV + G+ + Sbjct: 304 PLQGRLGSTSRAPRWAIAWKFPPEEVNTKLVDIRVGVGRTGRVTPFAVVEPVTVAGSEVE 363 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN+D +K + + +GD V++++AG+VIP++V +V+ R + F Sbjct: 364 FATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGSEREFV 412 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + + + RC C AQ ER+ + R +IE G Sbjct: 413 MPAECPECGTPLQPM-----KEGDVDLRCPNARYCRAQIRERVYYLAGRKCLDIENFGYV 467 Query: 490 QLDFFFKSEDPA-FSIRIPADIFTLQRRQQTSTTKI------------------------ 524 + DPA ++ D+F L+ Q T Sbjct: 468 AAGALTQPLDPAEPPLKDEGDLFDLKVEQLLPITSYVLDPDSGLPKRDPKTGEEKVVTFF 527 Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 N G + + D+I + L R I L IRHVG A +LA+ + S A+ Sbjct: 528 ANQKGEPKKNTLAMLDNIEAAKQRPLARIITGLSIRHVGPVAAAALAREFRSLDRIAEAS 587 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 +A VG IA ++ +++ + VE + ++ Sbjct: 588 EEELAAVE----------GVGPTIAASVKQWFAEDWHREIVEKWRRAGVLLEEEAPEDEG 637 Query: 645 -SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 +E +V TGTLQ R A+E + GA V+ +S+KTD ++VGDNPGSK +KA Q Sbjct: 638 PRPLEGLTVVVTGTLQTHTRDGAKEALQNRGAKVAGSVSKKTDFVVVGDNPGSKYDKAMQ 697 Query: 704 LGVKIMNEEQFLFLLQQ 720 L V +++E+ F LL+Q Sbjct: 698 LKVPVLDEDGFTVLLEQ 714 >gi|62185205|ref|YP_219990.1| NAD-dependent DNA ligase LigA [Chlamydophila abortus S26/3] gi|81312632|sp|Q5L5Q2|DNLJ_CHLAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|62148272|emb|CAH64037.1| putative DNA ligase [Chlamydophila abortus S26/3] Length = 660 Score = 485 bits (1249), Expect = e-134, Method: Composition-based stats. Identities = 241/701 (34%), Positives = 381/701 (54%), Gaps = 48/701 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R++ SL ++I D YY P I D +YD R+ +I P+ P + Sbjct: 7 REQYISLCKDIEEDDYRYYVLHNPTISDYDYDMKMRQLLSIEAQHPEWKVLW---SPSMR 63 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + S V H+ P LS+ + +E+L +F +RI + + +TLE KIDG Sbjct: 64 LGDRTSGSFPIVAHAHPMLSIANAYTLEELYEFFSRIEKTLG----YTPKYTLEIKIDGI 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + IRYE+ V A RG+G GED++A IR I ++P LS PE +EVRGEV+ S+ Sbjct: 120 AVAIRYEQRVLVQALSRGNGRKGEDITANIRTIRSLPLRLSKEAPEFLEVRGEVFFSRAT 179 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N + +ANPRNAA G L+ L+ + N + G +E + YE Sbjct: 180 FCQINAAQRQAEKPEFANPRNAAGGTLKLLSAKEA-AQRNLEISIYGSLAEENKRSHYEN 238 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L + GFPV RQ T +V+ +E++ R+ LP +IDG+V KVD+ QK LG Sbjct: 239 LLLCKEWGFPVFGQPRQCQTIEKVVASLHEIEVARAQLPMEIDGVVIKVDDIEDQKVLGM 298 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+ RW +++K+A ++A T L DI +Q+GRTG+LTPVA+L PV + G+ ++ A+L+NED Sbjct: 299 TAKHYRWALAYKYAPERAETILEDIIVQVGRTGVLTPVAKLRPVVLSGSRVSRASLYNED 358 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ +DIR+GD V V++ GE+IP+VV + + +R QP+ P +CP+C Sbjct: 359 EIER-----------KDIRIGDTVYVEKGGEIIPQVVGVCLEKRPEGTQPWVMPEYCPVC 407 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +V R+ + + RCT L CSA +E+++ F RDA +I+ LG++ + F Sbjct: 408 HQKVTRESDK------VSVRCTNSL-CSAGVIEKIRFFCGRDALDIDHLGEKVVTKLFD- 459 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I DIF + + GF D S+ N+ SI K +++ L+RFI +L Sbjct: 460 ---LGCIHRRCDIFQITEEDL------RQVPGFKDKSIRNVLKSIEKAKSVPLDRFITAL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI +VG A +LA+++LS ++ L + +GD +A++IV ++ Sbjct: 511 GIPYVGIGGANALAQHFLSLESVMAA----------SLDDLKAIEGIGDKVAESIVAYFH 560 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 P ++ ++ +L + H SS K V TGTL+K+ R +A+ Y+ G V Sbjct: 561 QPEHLEEIQKMLSLGVHILPCH--RASSSCLGKAFVITGTLEKLTRSEAETYIRNCGGKV 618 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +S+ TD ++VG +PGSKL++AQ+LGV I++E++ L LL Sbjct: 619 GSSVSKNTDYLVVGQDPGSKLKRAQELGVPILSEDELLKLL 659 >gi|323342976|ref|ZP_08083207.1| NAD-dependent DNA ligase LigA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463040|gb|EFY08235.1| NAD-dependent DNA ligase LigA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 659 Score = 485 bits (1249), Expect = e-134, Method: Composition-based stats. Identities = 250/710 (35%), Positives = 380/710 (53%), Gaps = 68/710 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + +L +++ ++ Y+ +P I D EYD L R + + P+ D N P K Sbjct: 3 KERILALRKKLHQYNYEYHVMDQPTIADVEYDQLLRELNELEVKHPEFF---DINSPTQK 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG ++ KVTH P SL ++ DL F R+ ++ + +E KIDG Sbjct: 60 VGGVVSERFSKVTHRFPMFSLGNAFSRSDLEVFDERLR-----AQFPNVSYVVELKIDGL 114 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 ++I YE G F+ A RGDG GEDV+ IR I +IP L LNI E + VRGEV++ Sbjct: 115 AMSIDYEDGLFIQAVTRGDGTVGEDVTQNIRVIDSIP--LKLNIDEDVTVRGEVFMPVKS 172 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N+ +AN RNAA+G +R+L+ TR L+ F + L E+ QY+ Sbjct: 173 FTRVNESRKENNEALFANCRNAAAGTIRQLDSKVVATRGLDGFWYTLVNAKELGITSQYD 232 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L ++ +GF VN ++ NT + E++ +R++LPYDIDG+V KV++F++Q++LG Sbjct: 233 SLTYLKQIGFKVNPEIKLCNTIDAVWQRIEEIEHMRASLPYDIDGVVIKVNDFAMQEELG 292 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++PRW I++KF ++ TR+ DI + +GRTG +TP A+L PV I G+L++ ATLHNE Sbjct: 293 FTVKTPRWAIAYKFKAEEVKTRVEDIFVTVGRTGKITPNAKLTPVQISGSLVSYATLHNE 352 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI +DIRVGD V+V++AGE+IP++V + V+ R +P+ FP CP+ Sbjct: 353 DYI-----------TNKDIRVGDEVVVRKAGEIIPEIVSVDVSNRTDVIKPYHFPKVCPV 401 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C +VR A H C CSA+ E L HF SRDA NI+ LG++++ Sbjct: 402 CMGHLVRFEGE------ADHYCVNV-DCSAKISEALVHFASRDAMNIDTLGERRVYQLHD 454 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 ++ + DI+TLQ + +E + G S L D+I +N S+E+ IF Sbjct: 455 AK----LLNTITDIYTLQEHKD----ALEKLEKMGPKSAEKLLDAIENSKNNSVEKLIFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ + LA YY + + + LI + +G +IAQ++V F+ Sbjct: 507 LGIRHVGAKTSNVLAAYYKTIASLMDAT----------YDELIEIDEIGGVIAQSVVSFF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + N +E LL+ H SS+ E K V TGTLQ + R A++ + Sbjct: 557 EIDHNRELIEDLLERGVNGNYNHVV-TSSKFEGMKFVLTGTLQTMGRTDAKKMIESF--- 612 Query: 677 VSAILSR----------KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 KTD+++ G++ GSKL KAQ LGVK EE+FL Sbjct: 613 -------GGSVSGSVSSKTDVVVYGESAGSKLTKAQSLGVKTWTEEEFLN 655 >gi|329942957|ref|ZP_08291736.1| DNA ligase, NAD-dependent [Chlamydophila psittaci Cal10] gi|332287548|ref|YP_004422449.1| NAD-dependent DNA ligase [Chlamydophila psittaci 6BC] gi|313848123|emb|CBY17124.1| putative DNA ligase [Chlamydophila psittaci RD1] gi|325506604|gb|ADZ18242.1| NAD-dependent DNA ligase [Chlamydophila psittaci 6BC] gi|328815217|gb|EGF85206.1| DNA ligase, NAD-dependent [Chlamydophila psittaci Cal10] gi|328914798|gb|AEB55631.1| DNA ligase, NAD-dependent [Chlamydophila psittaci 6BC] Length = 660 Score = 485 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 236/701 (33%), Positives = 382/701 (54%), Gaps = 48/701 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R++ SL ++I D YY P I D +YD R+ +I P+ P + Sbjct: 7 REQYLSLCKDIEEDDYRYYVLHNPTISDYDYDMKMRQLLSIEAQHPEWKVLW---SPSMR 63 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + S V H+ P LS+ + +E+L +F +R+ + + +TLE KIDG Sbjct: 64 LGDRASGSFPIVAHAHPMLSIANAYTLEELYEFFSRMEKALG----YTPKYTLEIKIDGI 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + +RYE+ + A RG+G GED++A IR I T+P LS PE +EVRGEV+ S+ Sbjct: 120 AVALRYEQRVLLQALSRGNGRKGEDITANIRTIRTLPLRLSKEAPEFLEVRGEVFFSRAT 179 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N + +ANPRNAA G L+ L+ + N + G +E + YE Sbjct: 180 FRQINAAQRQAEKPEFANPRNAAGGTLKLLSAKEA-AQRNLEISIYGSLAEENKRSHYEN 238 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L R GFPV RQ T +V+ +E++++R LP +IDG+V KVD+ QK LG Sbjct: 239 LLLCREWGFPVLGQPRQCQTIDEVVASLHEIEALRDQLPMEIDGVVIKVDDIEDQKVLGM 298 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+ RW +++K+A ++A T L DI +Q+GRTG+LTPVA+L PV + G+ ++ A+L+NED Sbjct: 299 TAKHYRWALAYKYAPERAETILEDILVQVGRTGVLTPVAKLRPVVLSGSRVSRASLYNED 358 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ +DIR+GD V V++ GE+IP+VV + + +R +QP+ P +CP+C Sbjct: 359 EIER-----------KDIRIGDTVYVEKGGEIIPQVVGVCLEKRPEGSQPWVMPEYCPVC 407 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +V R+ + + RCT L CSA +E+++ F RDA +I+ LG++ + F Sbjct: 408 HGKVTRESDK------VSVRCTNPL-CSAGVIEKIRFFCGRDALDIDHLGEKVVTKLFD- 459 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I DIF + ++ GF D S+ N+ SI K +++ L+RF+ +L Sbjct: 460 ---LGCIHRRCDIFQITEEDL------RHVPGFKDKSIRNVLKSIEKAKSVPLDRFLTAL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI +VG A +LA+++LS ++ L V +GD +A++IV ++ Sbjct: 511 GIPYVGIGGANALAQHFLSLESVMSA----------SLDDLKSVEGIGDKVAESIVAYFN 560 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 P + ++ +L + + SS K V TG+L+K+ R +A+ Y+ G V Sbjct: 561 QPEHREEIQIMLSLGVHVLPYRRE--SSSCLGKTFVITGSLEKLTRSEAETYIRNCGGKV 618 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +S+ TD ++VG +PGSKL+KAQ+L + I++E++ L +L Sbjct: 619 GSSVSKNTDYLVVGKDPGSKLQKAQELEIPILSEDELLKIL 659 >gi|268681538|ref|ZP_06148400.1| DNA ligase [Neisseria gonorrhoeae PID332] gi|268621822|gb|EEZ54222.1| DNA ligase [Neisseria gonorrhoeae PID332] Length = 829 Score = 485 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 251/846 (29%), Positives = 382/846 (45%), Gaps = 163/846 (19%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S+ + + L ++ + YY P I D+EYD L R +A+ P+L P+ Sbjct: 6 SMNPTAQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PD 62 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDD 123 P ++GGE +V H +P LSL ++ + ++ F R+ D Sbjct: 63 SPTQRVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DG 119 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-P 182 + + +EPK DG I++ Y G V AA RGDG +GEDV+ ++ + IP L P Sbjct: 120 GNPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTP 179 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVH 241 E+IEVRGEV + K DF LN G+KP+ANPRNAA+G LR+L+ R L+FF + Sbjct: 180 ELIEVRGEVLMLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPY 239 Query: 242 GLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDI 299 + + A+ + L + LGF + NG G V + E + PY+I Sbjct: 240 SIARQQGGFEAEEHIQELAYFQELGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEI 299 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG V KV+ + Q++LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+ Sbjct: 300 DGTVVKVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQ 359 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I Sbjct: 360 PVFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFE 408 Query: 420 ERHPDA--------------------------------QPFSFPSFCPICQSRVVRDLNP 447 R +P+ P+ CPIC+S + R+ Sbjct: 409 RRPMQETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPTRCPICRSEIEREEGE 468 Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + + Sbjct: 469 ------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVRHFADLY 522 Query: 508 A-DIFTLQRRQQT--------------------STTKIENILGFGDVSVTNLYDSINKRR 546 DI TLQ+ ++T S +N N+ I + Sbjct: 523 RIDIPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGK 582 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD------------ 594 L RF+F+LGIRHVG A++LA+ + + + + ++A D Sbjct: 583 TPELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFF 642 Query: 595 --------WLSLIR--------------------------VPL--VGDIIAQAIVE---- 614 L+ +P + + AQA+ E Sbjct: 643 AQAEQQAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQ 702 Query: 615 -----------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKL 652 + +N +E L + E S + K Sbjct: 703 SIEGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTF 762 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TGTL +R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E Sbjct: 763 VLTGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEA 822 Query: 713 QFLFLL 718 + L LL Sbjct: 823 ELLTLL 828 >gi|268594283|ref|ZP_06128450.1| DNA ligase [Neisseria gonorrhoeae 35/02] gi|268547672|gb|EEZ43090.1| DNA ligase [Neisseria gonorrhoeae 35/02] Length = 827 Score = 485 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 251/846 (29%), Positives = 383/846 (45%), Gaps = 163/846 (19%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S+ + + L ++ + YY P I D+EYD L R +A+ P+L P+ Sbjct: 4 SMNPTAQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PD 60 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDD 123 P ++GGE +V H +P LSL ++ + ++ F R+ D Sbjct: 61 SPTQRVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DG 117 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-P 182 + + +EPK DG I++ Y G V AA RGDG +GEDV+ ++ + IP L P Sbjct: 118 GNPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVSNIPLRLHGENVP 177 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVH 241 E+IEVRGEV + K DF LN G+KP+ANPRNAA+G LR+L+ R L+FF + Sbjct: 178 ELIEVRGEVLMLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPY 237 Query: 242 GLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDI 299 + + A+ + L + LGF + NG G V + E + PY+I Sbjct: 238 SIARQQGGFEAEEHIQELAYFQELGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEI 297 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KV+ + Q++LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+ Sbjct: 298 DGMVVKVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQ 357 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I Sbjct: 358 PVFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFE 406 Query: 420 ERHPDA--------------------------------QPFSFPSFCPICQSRVVRDLNP 447 R +P+ P+ CPIC+S + R+ Sbjct: 407 RRPMQETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE 466 Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + + Sbjct: 467 ------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVRHFADLY 520 Query: 508 A-DIFTLQRRQQT--------------------STTKIENILGFGDVSVTNLYDSINKRR 546 DI TLQ+ ++T S +N N+ I + Sbjct: 521 RIDIPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGK 580 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD------------ 594 L RF+F+LGIRHVG A++LA+ + + + + ++A D Sbjct: 581 TPELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFF 640 Query: 595 --------WLSLIR--------------------------VPL--VGDIIAQAIVE---- 614 L+ +P + + AQA+ E Sbjct: 641 AQAEQQAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQ 700 Query: 615 -----------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKL 652 + +N +E L + E S + K Sbjct: 701 SIEGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTF 760 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TGTL +R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E Sbjct: 761 VLTGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEA 820 Query: 713 QFLFLL 718 + L LL Sbjct: 821 ELLTLL 826 >gi|308233598|ref|ZP_07664335.1| DNA ligase, NAD-dependent [Atopobium vaginae DSM 15829] gi|328944216|ref|ZP_08241680.1| DNA ligase [Atopobium vaginae DSM 15829] gi|327491135|gb|EGF22910.1| DNA ligase [Atopobium vaginae DSM 15829] Length = 792 Score = 485 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 222/729 (30%), Positives = 349/729 (47%), Gaps = 63/729 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + L + + YH YY P+I D+++D+ + + +P L +D + ++ Sbjct: 84 EARVRELRKLLEYHAYRYYALDAPLITDNQFDSYLQELLHLEKTYPYL---DDEHSYTHR 140 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 IGG ++ +V H+ S++ N+E+L ++ + N + +T E KIDG Sbjct: 141 IGGYVSQQFRRVAHAQRMYSMDDAMNLEELDAWLEKTDEALGSSPSNPVAYTCELKIDGL 200 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR---------VLSLNIPEIIEVR 188 + + Y G+ + AA RGDG GEDV+A + I +P + + IEVR Sbjct: 201 GVALTYHNGQLLRAATRGDGSVGEDVTANVITIKDVPHTLLRDGLQKIANTGFGSDIEVR 260 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247 GEVY+ K+ F+ LN+ GR +ANPRNAA+G LR+ N R L F++ L Sbjct: 261 GEVYMPKHSFVRLNETADDEGRPTFANPRNAAAGSLRQKNARITAHRDLETFIYALASRE 320 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + Q + L + GF VN ++ + Y RS+L YDIDG+V KVD Sbjct: 321 SLDVHTQTDFLAWLSSCGFSVNPHAQRCVCAQEVHDYCARALKNRSSLDYDIDGVVVKVD 380 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 F+ Q QLG AR+PRW I+ KF +Q T L +I IQ+GRTG+LTPVA +PV + G+ Sbjct: 381 SFAFQDQLGFTARAPRWAIAFKFPPEQKQTILREIRIQVGRTGVLTPVAEFDPVLVAGST 440 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 I ATLHN D ++ RD+RVGD ++V +AG+VIP+VV ++ Sbjct: 441 IARATLHNIDEVRR-----------RDVRVGDTIVVHKAGDVIPEVVGPVLEGDLAALHF 489 Query: 428 ----FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + P CP C + VVR+ + + L C AQ +RL H+ SR A +I Sbjct: 490 ARPVWDMPQTCPACGASVVREDDEVAYR-------CVSLDCPAQASQRLIHWCSRKAMDI 542 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFT-------------LQRRQQTSTTKIENILGF 530 +GLG + + + ++ AD + K + + Sbjct: 543 DGLGSELITRLTEQ----GYVKDVADYYDKLSLENLSSLDTGRTYDTTNKLHKQGDAIRV 598 Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 G + + +NK + L R +F LGIRHVGA +A + Y ++ + Sbjct: 599 GKKIASKIIAQLNKSKQAGLARVLFGLGIRHVGASVAELIVATYPDLESLLRA------- 651 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIEN 649 D + + VG IA ++V+F P+N+ + L +K + + Sbjct: 652 ---DKDEIAAIDGVGPKIAASLVDFLHMPQNMEVLIRLQAAGVVLSAPEQKALLPQSLTG 708 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 V TGTL+ + R A + + LGA VS +SRKT +I G+ GSKL+KA++LGV ++ Sbjct: 709 YTFVLTGTLEDLSRTAAGDALKALGAKVSGSVSRKTSFVIAGEQAGSKLDKARELGVCVI 768 Query: 710 NEEQFLFLL 718 ++ +L Sbjct: 769 GRKELDEIL 777 >gi|225870290|ref|YP_002746237.1| DNA ligase [Streptococcus equi subsp. equi 4047] gi|254781420|sp|C0M6L2|DNLJ_STRE4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|225699694|emb|CAW93413.1| DNA ligase [Streptococcus equi subsp. equi 4047] Length = 652 Score = 485 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 214/703 (30%), Positives = 349/703 (49%), Gaps = 55/703 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L ++ + YY P + DSEYD L R + +P + P Sbjct: 2 KKRIRELTDLLNQYRQEYYTNDAPSVSDSEYDKLYRELVELEQTYPAYILK---DSPTQL 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + K H P SL+ ++ E+L F RI + E KIDG Sbjct: 59 VGSTILTGFQKYQHQYPLFSLQDAFSREELNAFDQRIK-----SAFPEAEYLAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G A RGDG GE+++ I+ I IP L+ + +RGE Y+S+ Sbjct: 114 SISLVYEAGVLKVGATRGDGTIGENITENIKNIKDIP--KRLSQALDVTIRGEAYMSRQA 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD--ITRYLNFFVHGLGKTSEIFAKGQY 255 F +N+E G +ANPRNAA+G LR+L+ + F +G A Q Sbjct: 172 FKTINEERQENGEPEFANPRNAAAGTLRQLDTRIVAKRQLATFLYQEVGL---ETADSQQ 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + L+++ LGF VN+ +++ + I + +++ R LPY+IDG+V KV++ ++Q++L Sbjct: 229 KTLERLADLGFSVNSHYLLSSSMNDIWDFIQSIEASREELPYEIDGVVVKVNQLAIQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++PRW I++KF ++ ++ +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPRWAIAYKFPAEEKEAEIVSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 DYI +DIR+GD V+V +AG++IP V+ ++ +R D P P+ CP Sbjct: 349 VDYI-----------AEKDIRIGDTVVVYKAGDIIPAVLRVVEAKRR-DQAPMPIPTACP 396 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 CQS++V + A RC L C + L+HF SR A NI GLG ++ + Sbjct: 397 SCQSQLVHFEDE------VALRCINPL-CPSLVQRSLEHFASRQAMNIAGLGPAVVEKLY 449 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 A + ADI+ L + + G + S L +I + + S E+ +F Sbjct: 450 S----AGLVHDVADIYRLSLEDLLT------LDGIKEKSAEKLLAAIEQSKANSAEKLLF 499 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIRH+GA+ +R + + Y + L ++ +G +I Q++V++ Sbjct: 500 GLGIRHIGAKASRLILEAYGDLEALLAVT----------AEELAQIDGLGLVIGQSLVQY 549 Query: 616 YQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 +Q + + L + + + +V TG L+K+ R +A E + QLG Sbjct: 550 FQQEQAAQLLAELKSAGVNLAYLGQRPDQQAALFGLTVVLTGKLEKLNRTQAMEKLEQLG 609 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 A V+ +S+KTD+++ G GSKL KAQQLG++I +E+ L L Sbjct: 610 AKVTGSVSKKTDLVVAGSEAGSKLAKAQQLGIRIEDEDWLLNL 652 >gi|254493140|ref|ZP_05106311.1| DNA ligase [Neisseria gonorrhoeae 1291] gi|268598398|ref|ZP_06132565.1| DNA ligase [Neisseria gonorrhoeae MS11] gi|226512180|gb|EEH61525.1| DNA ligase [Neisseria gonorrhoeae 1291] gi|268582529|gb|EEZ47205.1| DNA ligase [Neisseria gonorrhoeae MS11] Length = 829 Score = 485 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 251/846 (29%), Positives = 383/846 (45%), Gaps = 163/846 (19%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S+ + + L ++ + YY P I D+EYD L R +A+ P+L P+ Sbjct: 6 SMNPTAQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PD 62 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDD 123 P ++GGE +V H +P LSL ++ + ++ F R+ D Sbjct: 63 SPTQRVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DG 119 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-P 182 + + +EPK DG I++ Y G V AA RGDG +GEDV+ ++ + IP L P Sbjct: 120 GNPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTP 179 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVH 241 E+IEVRGEV + K DF LN G+KP+ANPRNAA+G LR+L+ R L+FF + Sbjct: 180 ELIEVRGEVLMLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPY 239 Query: 242 GLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDI 299 + + A+ + L + LGF + NG G V + E + PY+I Sbjct: 240 SIARQQGGFEAEEHIQELAYFQELGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEI 299 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KV+ + Q++LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+ Sbjct: 300 DGMVVKVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQ 359 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I Sbjct: 360 PVFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFE 408 Query: 420 ERHPDA--------------------------------QPFSFPSFCPICQSRVVRDLNP 447 R +P+ P+ CPIC+S + R+ Sbjct: 409 RRPMQETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE 468 Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + + Sbjct: 469 ------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVRHFADLY 522 Query: 508 A-DIFTLQRRQQT--------------------STTKIENILGFGDVSVTNLYDSINKRR 546 DI TLQ+ ++T S +N N+ I + Sbjct: 523 RIDIPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGK 582 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD------------ 594 L RF+F+LGIRHVG A++LA+ + + + + ++A D Sbjct: 583 TPELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFF 642 Query: 595 --------WLSLIR--------------------------VPL--VGDIIAQAIVE---- 614 L+ +P + + AQA+ E Sbjct: 643 AQAEQQAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQ 702 Query: 615 -----------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKL 652 + +N +E L + E S + K Sbjct: 703 SIEGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTF 762 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TGTL +R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E Sbjct: 763 VLTGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEA 822 Query: 713 QFLFLL 718 + L LL Sbjct: 823 ELLTLL 828 >gi|121634462|ref|YP_974707.1| DNA ligase [Neisseria meningitidis FAM18] gi|166216218|sp|A1KSS7|DNLJ_NEIMF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|120866168|emb|CAM09908.1| putative DNA ligase [Neisseria meningitidis FAM18] Length = 841 Score = 485 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 248/842 (29%), Positives = 380/842 (45%), Gaps = 167/842 (19%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + + L ++ + YY P + D+EYD L R +A+ P+L P+ P Sbjct: 26 AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQ 82 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127 ++GGE +V H +P LSL ++ + ++ F R+ D Sbjct: 83 RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGKPE 139 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186 + +EPK DG I++ Y G V AA RGDG +GEDV+ I+ + IP L PE+IE Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245 VRGEV + K DF+ALN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 200 VRGEVLMLKADFVALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259 Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303 + A+ + L + LGF + NG V + E + PY+IDG+V Sbjct: 260 QQDGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMV 319 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV+ + Q +LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV + Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428 Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451 +P+ P+ CPIC+S + R+ Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538 Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550 L + + N+ I + L Sbjct: 539 RLDIPTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPVKWAENILAGIEASKTPEL 598 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD---------------- 594 RF+F+LGIRHVG A++LA+ + + + + ++A D Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658 Query: 595 ----WLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614 L+ +P + + AQA+ E Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEG 718 Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656 + P+N +E L + E S + K V TG Sbjct: 719 LQTDKALPTDWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838 Query: 717 LL 718 LL Sbjct: 839 LL 840 >gi|124024594|ref|YP_001018901.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus str. MIT 9303] gi|166216228|sp|A2CDS6|DNLJ_PROM3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123964880|gb|ABM79636.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9303] Length = 696 Score = 485 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 207/714 (28%), Positives = 343/714 (48%), Gaps = 63/714 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L Q ++ YY P + D+ YD L R + L P+ P +I Sbjct: 10 ERAAELRQLLNQAAHSYYVLDTPTMEDAVYDRLYRELLDLEVKDSSLL---TPDSPTQRI 66 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ-----KKDDNSIFFTLEPK 133 GG V H IP LSL+ +N+++L + R+ + K + E K Sbjct: 67 GGAPAQGFASVPHRIPLLSLDNAFNVDELTGWYVRLVKLLGYQTNPKTPQPDLSMVGELK 126 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-EIIEVRGEVY 192 IDG + + YE G + AA RGDG +GE+++A +R I +IP L L P +EVRGE + Sbjct: 127 IDGNALALSYEHGVLIRAATRGDGANGEEITANVRTIASIPLRLQLVHPPAWLEVRGEAF 186 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF- 250 I + F +N G +ANPRNA +G LR+L+P +R L+FF + L Sbjct: 187 IPNSTFADINTARGERGDVAFANPRNACAGTLRQLDPKVVASRQLDFFAYTLHLPDNWQA 246 Query: 251 -------AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 Q+ +LQ ++ +GF VN + ++ R LPY DG+V Sbjct: 247 KADDPASPMNQWAVLQWLQAIGFKVNPNTALLTDLTAVEHFFKLWDEARHQLPYATDGVV 306 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 K+++ LQ+ G ++PRW I+ K+A ++A ++LL + Q+GRTG +TPVA E + + Sbjct: 307 VKLNDLQLQETAGFTQKAPRWAIALKYAAEEAPSKLLRLTCQVGRTGAVTPVAEFEAIPL 366 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G ++ ATLHN + + L D+ GD ++V++AGE+IP+V+ ++ R Sbjct: 367 AGTSVSRATLHNANRVSEL-----------DLHSGDTIVVRKAGEIIPEVIGVLRELRPA 415 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 AQ P CP C+S +VR+ AA RC +C A L+H+VS+ A ++ Sbjct: 416 GAQTLKLPHICPECRSDLVREEGE------AATRCVN-NSCPAILRGTLRHWVSKGALDV 468 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +GLG + ++ ++ AD++ L+ S G+ S NL ++ Sbjct: 469 DGLGSKLIEQLVNR----GLVQSIADLYALEASLLASM------DRMGNKSTENLITALQ 518 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 ++ + ++ LGI HVG A++LAK + S A + V Sbjct: 519 ASKSKPWHKQLYGLGIHHVGEVNAKALAKKFPSAATLANAACK-------APEQITSVFG 571 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---------EIENKKLVF 654 VG+ IAQ++ +++ P N + L K++ S+ +E ++ ++ + V Sbjct: 572 VGNEIAQSLQQWFATPANQELLAKL-KQLGISLEANEDELAHDTDQKQRTVSLQGQTFVL 630 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 TGTL + R +AQ + G V++ +S+ T ++ G GSKL KA++L V + Sbjct: 631 TGTLPTLSRSEAQALIEAAGGKVNSSVSKNTSYVVAGAEAGSKLNKAEKLRVTV 684 >gi|73667316|ref|YP_303332.1| NAD-dependent DNA ligase [Ehrlichia canis str. Jake] gi|123732189|sp|Q3YRC1|DNLJ_EHRCJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|72394457|gb|AAZ68734.1| NAD-dependent DNA ligase [Ehrlichia canis str. Jake] Length = 677 Score = 485 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 264/708 (37%), Positives = 408/708 (57%), Gaps = 39/708 (5%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E+A+ EL L +I +HD YY P I D+EYD L + + I +FP+LA Sbjct: 1 MKQEEAKLELDKLNSQIQHHDFLYYTQDNPQITDAEYDVLCHKRNLILESFPELA---SN 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N + +G + KV H+ LSL+ +N +D+ KFITR + + SI + E Sbjct: 58 NNYQDNVGSTPDAKFAKVKHAEKMLSLDNAFNQQDIEKFITRTKKLLDMDNSQSIAISCE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG ++ Y+KG+ A+ RG+G+ GE+++ ++ I +P + P+ +EVRGE+ Sbjct: 118 LKIDGLSFSVIYKKGEISQASTRGNGYFGENITNNVKTIKNLPHTIQNA-PDSLEVRGEI 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 YI ++DF + +ANPRNAA+G +R+L+ R L +F++ + T + Sbjct: 177 YIDRSDF-----IQLNKDGNNFANPRNAAAGSVRQLDINITAQRKLKYFMYTIVNTKCLT 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q E L +++ LGF VN N +++YN+ + RS + YDIDG++YKV++ Sbjct: 232 ---QEETLNQLKTLGFCVNEHTITTNNIEDALNFYNQFYNNRSNISYDIDGIIYKVNDIK 288 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q LG +SPRW I++KF +A T + I IQIGRTG+LTP+A L P+NIGG ++T Sbjct: 289 SQHILGATNKSPRWAIAYKFPAAEAKTLVNKISIQIGRTGVLTPIAELSPINIGGVIVTR 348 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN+ I+ +DIR GD V+VKRAG+VIP+VVD+ N R + F F Sbjct: 349 ASLHNKSEIER-----------KDIREGDYVIVKRAGDVIPQVVDVDKNLRAQELTKFIF 397 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S + + + CTG L C Q LE++KHFVS+DAFNI G GK+Q Sbjct: 398 PTTCPSCGSNLFQAEQE------VSIYCTGELFCKNQILEKIKHFVSKDAFNIIGFGKKQ 451 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L FF++ I DIFTL+ + S K+E++ G+G+ S+ NL+ +IN + ISL Sbjct: 452 LLFFYEQ----GLITNIVDIFTLEEKISNSDLKLESLHGWGEKSIHNLFSAINNSKTISL 507 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E FIF+LGIR VG IA+ LAK++LSY+ + E+ + N L+ + +G Sbjct: 508 ENFIFALGIRFVGKYIAKILAKHFLSYEKWYHEMLRLAQDENY----LLNIQQIGHKTIH 563 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ F+ N+ + L++ ++ + + ++ S + K +VFTG L + RH+A+ Sbjct: 564 SLKMFFTEQHNLDTINNLVRHLTITDAKTTSHL-SLLHGKTIVFTGELSNMSRHEAKTKS 622 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 GA VS+ LS+ TD +IVG+NPGSK +KAQ L ++I+ E+ +L + Sbjct: 623 ETAGAKVSSSLSKNTDFLIVGNNPGSKYKKAQSLNIQILTEDLWLQYI 670 >gi|268596277|ref|ZP_06130444.1| DNA ligase [Neisseria gonorrhoeae FA19] gi|268603059|ref|ZP_06137226.1| DNA ligase [Neisseria gonorrhoeae PID1] gi|291044437|ref|ZP_06570146.1| DNA ligase [Neisseria gonorrhoeae DGI2] gi|268550065|gb|EEZ45084.1| DNA ligase [Neisseria gonorrhoeae FA19] gi|268587190|gb|EEZ51866.1| DNA ligase [Neisseria gonorrhoeae PID1] gi|291011331|gb|EFE03327.1| DNA ligase [Neisseria gonorrhoeae DGI2] Length = 829 Score = 485 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 251/846 (29%), Positives = 382/846 (45%), Gaps = 163/846 (19%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S+ + + L ++ + YY P I D+EYD L R +A+ P+L P+ Sbjct: 6 SMNPTAQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PD 62 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDD 123 P ++GGE +V H +P LSL ++ + ++ F R+ D Sbjct: 63 SPTQRVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DG 119 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-P 182 + + +EPK DG I++ Y G V AA RGDG +GEDV+ ++ + IP L P Sbjct: 120 GNPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTP 179 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVH 241 E+IEVRGEV + K DF LN G+KP+ANPRNAA+G LR+L+ R L+FF + Sbjct: 180 ELIEVRGEVLMLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPY 239 Query: 242 GLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDI 299 + + A+ + L + LGF + NG G V + E + PY+I Sbjct: 240 SIARQQGGFEAEEHIQELAYFQELGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEI 299 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG V KV+ + Q++LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+ Sbjct: 300 DGTVVKVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQ 359 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I Sbjct: 360 PVFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFE 408 Query: 420 ERHPDA--------------------------------QPFSFPSFCPICQSRVVRDLNP 447 R +P+ P+ CPIC+S + R+ Sbjct: 409 RRPMQETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE 468 Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + + Sbjct: 469 ------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVRHFADLY 522 Query: 508 A-DIFTLQRRQQT--------------------STTKIENILGFGDVSVTNLYDSINKRR 546 DI TLQ+ ++T S +N N+ I + Sbjct: 523 RIDIPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGK 582 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD------------ 594 L RF+F+LGIRHVG A++LA+ + + + + ++A D Sbjct: 583 TPELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFF 642 Query: 595 --------WLSLIR--------------------------VPL--VGDIIAQAIVE---- 614 L+ +P + + AQA+ E Sbjct: 643 AQAEQQAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQ 702 Query: 615 -----------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKL 652 + +N +E L + E S + K Sbjct: 703 SIEGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTF 762 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TGTL +R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E Sbjct: 763 VLTGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEA 822 Query: 713 QFLFLL 718 + L LL Sbjct: 823 ELLTLL 828 >gi|292657108|ref|YP_003537005.1| DNA ligase, NAD-dependent [Haloferax volcanii DS2] gi|291370943|gb|ADE03170.1| DNA ligase, NAD-dependent [Haloferax volcanii DS2] Length = 699 Score = 485 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 241/725 (33%), Positives = 372/725 (51%), Gaps = 46/725 (6%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 + P E+LS E A + + L + + HD YY + P++ D+ YDAL R A+ AF Sbjct: 20 EFEPAESLSREAAEGQAALLREAVREHDHRYYVAADPLVSDAAYDALFSRLVALEDAFD- 78 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 + N P N++GGE +L V H P LS+++ + +DLR+F R+ R + Sbjct: 79 ---LDTTNSPTNRVGGEPIDALETVEHVAPMLSIDQSTDADDLREFDERVRR-----EVG 130 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 ++ + EPK DG + + YE G+FV AA RGDG G+DVSA ++ IPT+P L + P+ Sbjct: 131 AVDYVCEPKFDGLSVEVVYEDGEFVRAATRGDGRRGDDVSAQVKTIPTVPLSLRGDHPDR 190 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244 + VRGE+Y+ K+DF LN + G +ANPRNAA+G LR L+P+ + Sbjct: 191 LAVRGEIYMPKSDFSDLNARRVEAGEDAFANPRNAAAGTLRNLDPSVVADRPLAVFFYDI 250 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + Q+ L ++R G V + + +A + Y + M++ R L Y+IDG V Sbjct: 251 LDASARPDSQWAALDRLREWGLRVTDRIERAEDVAEAIDYRDRMQAARDDLDYEIDGTVI 310 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD +++LGE++RS RW ++KF + T + DI +Q+GRTG LTPVA L+PV++G Sbjct: 311 KVDSRDARERLGEKSRSVRWAFAYKFPARHEVTTVRDIVVQVGRTGRLTPVAILDPVDVG 370 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ ATLHN D L + VGDRV VKRAG+VIP+VV++ Sbjct: 371 GVTVSRATLHNPDERAAL-----------GVAVGDRVRVKRAGDVIPQVVEVT----EDG 415 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + FP CP+C S V RD C+GGL+C AQ+ + HF + A +I+ Sbjct: 416 GGCYEFPDECPVCGSAVDRD--------GPLAFCSGGLSCPAQREASIGHFAVKGAMDID 467 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++++ A + AD++ L + + G+G+ S NL ++ Sbjct: 468 GLGEERVAQLVD----AGLVETVADLYDLTADD------LAELEGWGETSAENLVAAVEN 517 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 ++ SL+ F+ L I VG AR LA+ + S + F E + + L VP V Sbjct: 518 AKHPSLDSFLVGLSIPEVGEATARGLAREFGSIEAFPIEADAEEDEFDAFEERLTTVPDV 577 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G+ +A+ + +F++N N + ALL ++ E++ V TGTL R Sbjct: 578 GETVARRVRDFFENADNRAVIRALLDRGV--DPEPVESGGDELDGLTFVVTGTLAA-SRS 634 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 E V G V+ +S TD ++VG+NPG SK + A+ V + E +F LL + Sbjct: 635 DVTELVESHGGNVTGSVSGNTDYLVVGENPGRSKRDDAEANDVPTLAETEFEALLAERGV 694 Query: 724 TLRIH 728 Sbjct: 695 AYPPE 699 >gi|238020272|ref|ZP_04600698.1| hypothetical protein GCWU000324_00147 [Kingella oralis ATCC 51147] gi|237868666|gb|EEP69670.1| hypothetical protein GCWU000324_00147 [Kingella oralis ATCC 51147] Length = 797 Score = 485 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 249/807 (30%), Positives = 395/807 (48%), Gaps = 132/807 (16%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +QA++++ +L +++ + YY P + DSEYD L R +A+ +P P Sbjct: 20 PQQAQQKIQTLTAQLNQYAHEYYTLDAPTVPDSEYDRLYRELEALETEYPQF---RLPES 76 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI----------EDLRKFITRIYRFWQKKDD 123 P N++GG + V H++P LSL ++ ++R F R+ + Sbjct: 77 PTNRVGGAVLDGFETVIHAVPMLSLANAFSPRDDEAGTFDHAEMRAFDERVCKDLGAAH- 135 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-P 182 + +EPK DG I++ Y+ G + AA RGDG +GEDV+ I+ + IP L + P Sbjct: 136 --TEYIIEPKFDGLAISLLYQNGILIQAATRGDGTTGEDVTENIKTVRNIPLRLHGDEVP 193 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 ++IEVRGEV + K DF ALN + G+KP+ANPRNAA+G LR+LN R L+FF + Sbjct: 194 DLIEVRGEVLMLKADFAALNARQLDAGQKPFANPRNAAAGSLRQLNSAITAQRKLHFFGY 253 Query: 242 GLGK--TSEIFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 G+ + T+ + + ++ + LGF +R ++ +Y M R LPY+ Sbjct: 254 GIARLSTAFRQPENHAQEIELLARLGFSEPQAQIRVCANIQEVLDFYETMAQQRPQLPYE 313 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+V KV++ Q+QLG +R+PRW I+HKF ++A T + ID+Q+GRTG +TPVARL Sbjct: 314 IDGMVVKVNDLRQQQQLGFVSRAPRWAIAHKFPAEEALTTVEAIDVQVGRTGSITPVARL 373 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 +PV +GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +++ Sbjct: 374 KPVFVGGVTVTNATLHNQDEVAR-----------KDVRVGDTVVVRRAGDVIPEVVRVVL 422 Query: 419 NERH------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSA 466 R P F P CP+C S V R++ A RCTGG+ C A Sbjct: 423 ERRPMRNVDLLGERQEPQHPAFRLPETCPVCGSAVEREIGE------AVARCTGGIVCKA 476 Query: 467 QQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN 526 Q+ + L HF SR A +I GLG +Q++ + + + ADI+ L + + ++ Sbjct: 477 QRAQGLIHFASRKAMDIVGLGDKQIEALVEQD----VLHSFADIYQLDIAKLQTIKDSKS 532 Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE--- 583 + N+ D++ R L RF+F+LGIRHVG A+ LA + + + Sbjct: 533 ---GANKWTHNILDAVAASRQPPLARFLFALGIRHVGESTAKQLAAAFGDWDTVRRAPEP 589 Query: 584 -------INNIIAHNNDDWLSLIR----VPL----------------------------- 603 I +++AH+ + L + Sbjct: 590 VLACLPDIGSVVAHSIAHFFRLPEQQKLLDDLLHFVSPQEAAIATLVLEYATPARWLARL 649 Query: 604 ----VGDIIAQAIVE---------------------FYQNPRNICAVEA-------LLKE 631 + + AQ + + + + P N + L + Sbjct: 650 PDYKISEKRAQELWDLAGGSIAQLLADDALPSDWQAWRRQPENARLLRDIDAFFAQLPEH 709 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 P+ ++ +EI K V TGTL ++R +A + G VS +S+KTD ++ G Sbjct: 710 ALPADNAVSGSLKNEITGKIFVLTGTLPTLKRDQAAALIEAAGGKVSGSVSKKTDFVVAG 769 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLL 718 GSKLEKAQ LG+ +++EE+ L +L Sbjct: 770 AEAGSKLEKAQSLGITVLSEEELLGML 796 >gi|291288208|ref|YP_003505024.1| DNA ligase, NAD-dependent [Denitrovibrio acetiphilus DSM 12809] gi|290885368|gb|ADD69068.1| DNA ligase, NAD-dependent [Denitrovibrio acetiphilus DSM 12809] Length = 652 Score = 485 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 227/700 (32%), Positives = 353/700 (50%), Gaps = 53/700 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 L +++Y+ YY P++ D+EYD L I P + + P ++G Sbjct: 3 YRELVDKLNYYSKKYYVEDDPVVADAEYDKLYNELLRIEAEDPSII---SHDSPSQRVGD 59 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + L VTH I LSL ++ E+L KF+ I + +EPKIDG + Sbjct: 60 KPVTGLENVTHEIKLLSLSNAYSREELEKFVENI-----WDEYPGAEIVVEPKIDGAAMV 114 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + YE GK V A RGDG +GEDV+ IR I ++P L + + +RGEV++ F Sbjct: 115 LTYEDGKLVRGATRGDGTTGEDVTHNIRTIRSLP--LEIEKSGRMIIRGEVFMPVASFER 172 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEMLQ 259 LN G K +ANPRNAA+G L+ L+ L+ F++G+ + ++ Sbjct: 173 LNRLKGEKGEKLFANPRNAAAGTLKLLDSKTAYERGLDVFLYGMDMGGTEH---HLKDME 229 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 M+ LGF +N R+ N F I ++ + S R++L YDIDG V KVD + Q+ LG Sbjct: 230 LMKSLGFNINEMTRKFNNFEDIWAHVEYIGSRRNSLEYDIDGAVIKVDSKAYQRSLGSTI 289 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 +SP+W I++K+ ++A T L D+D Q+GRTG +TPVA+LEPV + G+ I+NATLHNED I Sbjct: 290 KSPKWAIAYKYPAQEAVTILRDVDFQVGRTGSITPVAKLEPVFLAGSTISNATLHNEDEI 349 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439 L I++GD+V +++ G++IPKVV I++ER + F S CP+CQS Sbjct: 350 ARL-----------GIKIGDKVTIRKGGDIIPKVVRPIIDERDGSERDIEFLSNCPVCQS 398 Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 ++ ++ K C + C AQ+ +L HF SR A +I+G G+ ++ + Sbjct: 399 KLQKEETDINRK------CINPV-CPAQRKLKLLHFASRKAMDIQGFGEALVNKLVDDGE 451 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559 I F + + G+G+ SV L+++I + ++ ++ LGI Sbjct: 452 LHDVADIYEKRFDYLKEE----------DGYGEKSVQKLHEAIENSKKKPFDKVLYGLGI 501 Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 RHVG A+ LA+Y+ D +L+ V +G A AIV + N Sbjct: 502 RHVGERTAQVLAEYFGDIDKLVSA----------DEEALVNVRDIGSETAGAIVNSFAND 551 Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 + L K ++ S + K V TGTL + R ++ + G V + Sbjct: 552 DLSNIINRLKKSGLCFTAEKKEKASDVLNGKTFVVTGTLS-LPRDYFKKVIESNGGKVLS 610 Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +S K D ++VG+N GSKLEKAQ+LGV I++E +L+ Sbjct: 611 AVSGKLDYLLVGENAGSKLEKAQKLGVAIIDESGLTKMLK 650 >gi|268600753|ref|ZP_06134920.1| DNA ligase [Neisseria gonorrhoeae PID18] gi|268683767|ref|ZP_06150629.1| DNA ligase [Neisseria gonorrhoeae SK-92-679] gi|268686007|ref|ZP_06152869.1| DNA ligase [Neisseria gonorrhoeae SK-93-1035] gi|293399617|ref|ZP_06643770.1| DNA ligase, NAD-dependent [Neisseria gonorrhoeae F62] gi|268584884|gb|EEZ49560.1| DNA ligase [Neisseria gonorrhoeae PID18] gi|268624051|gb|EEZ56451.1| DNA ligase [Neisseria gonorrhoeae SK-92-679] gi|268626291|gb|EEZ58691.1| DNA ligase [Neisseria gonorrhoeae SK-93-1035] gi|291610186|gb|EFF39308.1| DNA ligase, NAD-dependent [Neisseria gonorrhoeae F62] Length = 829 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 252/846 (29%), Positives = 383/846 (45%), Gaps = 163/846 (19%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S+ + + L ++ + YY P I D+EYD L R +A+ P+L P+ Sbjct: 6 SMNPTAQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PD 62 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDD 123 P ++GGE +V H +P LSL ++ + ++ F R+ D Sbjct: 63 SPTQRVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DG 119 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-P 182 + + +EPK DG I++ Y G V AA RGDG +GEDV+ ++ + IP L P Sbjct: 120 GNPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVSNIPLRLHGENVP 179 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVH 241 E+IEVRGEV + K DF ALN G+KP+ANPRNAA+G LR+L+ R L+FF + Sbjct: 180 ELIEVRGEVLMLKADFAALNQRQTENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPY 239 Query: 242 GLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDI 299 + + + A+ + L + LGF + NG G V + E + PY+I Sbjct: 240 SVARQQGGLIAEEHIQELAYFQALGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEI 299 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG V KV+ + Q +LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+ Sbjct: 300 DGTVVKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQ 359 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I Sbjct: 360 PVFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFE 408 Query: 420 ERHPDA--------------------------------QPFSFPSFCPICQSRVVRDLNP 447 R +P+ P+ CPIC+S + R+ Sbjct: 409 RRPMQETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE 468 Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + + Sbjct: 469 ------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVRHFADLY 522 Query: 508 A-DIFTLQRRQQT--------------------STTKIENILGFGDVSVTNLYDSINKRR 546 DI TLQ+ ++T S +N N+ I + Sbjct: 523 RIDIPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGK 582 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD------------ 594 L RF+F+LGIRHVG A++LA+ + + + + ++A D Sbjct: 583 TPELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFF 642 Query: 595 --------WLSLIR--------------------------VPL--VGDIIAQAIVE---- 614 L+ +P + + AQA+ E Sbjct: 643 AQAEQQAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQ 702 Query: 615 -----------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKL 652 + +N +E L + E S + K Sbjct: 703 SIEGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTF 762 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TGTL +R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E Sbjct: 763 VLTGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEA 822 Query: 713 QFLFLL 718 + L LL Sbjct: 823 ELLTLL 828 >gi|225868755|ref|YP_002744703.1| DNA ligase [Streptococcus equi subsp. zooepidemicus] gi|225702031|emb|CAW99626.1| DNA ligase [Streptococcus equi subsp. zooepidemicus] Length = 652 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 215/703 (30%), Positives = 350/703 (49%), Gaps = 55/703 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L ++ + YY P + DSEYD L R + +P + P Sbjct: 2 KKRIRELTDLLNQYRQEYYTNDAPSVSDSEYDKLYRELVELEQTYPAYILK---DSPTQL 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F RI + E KIDG Sbjct: 59 VGGTILTGFQKYQHQYPLFSLQDAFSREELNAFDQRIK-----SAFPEAEYLAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G A RGDG GE+++ I+ I IP L+ + +RGE Y+S+ Sbjct: 114 SISLVYEAGVLKVGATRGDGTIGENITENIKNIKDIP--KRLSQALDVTIRGEAYMSRQA 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD--ITRYLNFFVHGLGKTSEIFAKGQY 255 F +N+E G +ANPRNAA+G LR+L+ + F +G A+ Q Sbjct: 172 FKTINEERQENGEPEFANPRNAAAGTLRQLDTRIVAKRQLATFLYQEVGL---EAAESQQ 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 L+++ LGF VN+ +++ I + +++ R LPY+IDG+V KV++ ++Q++L Sbjct: 229 RTLERLADLGFSVNSHYLLSSSMTDIWDFIQSIEATREQLPYEIDGVVIKVNQLAIQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++PRW I++KF ++ ++ +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPRWAIAYKFPAEEKEAEIVSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 DYI +DIR+GD V+V +AG++IP V+ ++ +R + P P+ CP Sbjct: 349 VDYI-----------AEKDIRIGDTVVVYKAGDIIPAVLRVVEAKR-SNQTPMPIPTACP 396 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 CQS++V + A RC L C + L+HF SR A I GLG ++ + Sbjct: 397 SCQSQLVHFEDE------VALRCINPL-CPSLIQRSLEHFASRQAMAIAGLGPAVVEKLY 449 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 A + ADI+ L + + G + S L +I + + S E+ +F Sbjct: 450 S----AGLVHDVADIYRLSLEDLLT------LDGIKEKSAEKLLAAIEQSKANSAEKLLF 499 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIRHVGA+ +R + + Y + L ++ +G +I Q++V++ Sbjct: 500 GLGIRHVGAKASRLILETYGDLETLLSVT----------AEELAQIDGLGLVIGQSLVQY 549 Query: 616 YQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 +Q + + L + +E+ +V TG L+K+ R +A+E + QLG Sbjct: 550 FQQDQAAQLLAELKSAGVNLAYLGQRPDRQAELFGFTVVLTGKLEKLNRTQAKEKLEQLG 609 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 A V+ +S+KTD+++ G GSKL KAQQLG++I +E+ L L Sbjct: 610 AKVTGSVSKKTDLVVAGSEAGSKLAKAQQLGIRIEDEDWLLNL 652 >gi|254374741|ref|ZP_04990222.1| hypothetical protein FTDG_00916 [Francisella novicida GA99-3548] gi|151572460|gb|EDN38114.1| hypothetical protein FTDG_00916 [Francisella novicida GA99-3548] Length = 678 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 255/713 (35%), Positives = 389/713 (54%), Gaps = 54/713 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ + + + L +S Y+ KPII DS+YD L R + + P Sbjct: 14 LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N L+++GGE+ + H SL ++++E+LR F +I I E Sbjct: 71 NSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYGKIE--------YDIELECE 122 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG I+I Y+ GKF YA RGDG GE VS ++ I +P + N PE +EVRGE Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT--S 247 + + K FL+LN+ M K +ANPRNAA+G +R L+ R L + +G+G Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + + Q+E++Q ++ GF +++ + A F + Y+++M R+ L YDIDGLV+KV+ Sbjct: 243 FVHPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQ +G AR P+W +++KF ++ + +L+++ Q+GRTG +TPVARL+PV +GG + Sbjct: 303 NIKLQDIIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN + IK +DIRV DRV+V+RAG+VIP+VV + R PDAQ Sbjct: 363 VSNATLHNINEIKR-----------KDIRVSDRVIVRRAGDVIPEVVKSLPQYRKPDAQV 411 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P CP+C S + + A +RCTGG C AQ ERLKHFVSR A +I+ LG Sbjct: 412 VEMPISCPVCDSAI------ENVNDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ A I+ PADI+ L Q T + G S N+ DSI K + Sbjct: 466 AKLIEQLV----AANLIKYPADIYKLNFDQLTG------LERMGAKSSQNVLDSIKKSKT 515 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SL RFIF++GI+ +G + LA ++ S ++F + LI + +G+I Sbjct: 516 PSLARFIFAIGIKDIGEVSSDVLANHFGSLESFRDA----------KFEELIEINDIGEI 565 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +A IV F+ + NI VE LL + + E + K +V TG+ + R + Sbjct: 566 MANNIVSFWHDSLNIKIVEELLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ E+ LL Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVILEDNLKDLL 678 >gi|304436815|ref|ZP_07396781.1| NAD-dependent DNA ligase LigA [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370187|gb|EFM23846.1| NAD-dependent DNA ligase LigA [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 677 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 217/718 (30%), Positives = 354/718 (49%), Gaps = 45/718 (6%) Query: 12 LSI-EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 +S ++ + ELS L ++I + YY ++ I D ++D L R + A+P+L Sbjct: 1 MSKIDEVKTELSELRRKIRKYSKQYYDDNESEISDYDFDMLMMRLKKLEAAYPELI---T 57 Query: 71 PNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 N P +GG + V H +P LSL+ +++ E++ F+ + + F Sbjct: 58 KNSPTRTVGGSAQREVGLLVPHDVPMLSLQDVFSEEEIHAFVDNV-----LAHFPAAEFV 112 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHS-GEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG + +RYE G A RGDG GEDV+A R I + + L +P EVR Sbjct: 113 VEEKIDGLSLALRYENGVLARAITRGDGIVQGEDVTANARVIDDVVQKLHDALPY-FEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247 GEVY+ + F +N+ +G KP+ANPRN A+G LR+L+ R L+ FV L ++ Sbjct: 172 GEVYMKRAAFAEVNERQELLGLKPFANPRNCAAGTLRQLDSRITKERRLSMFVFNLQRSD 231 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E M+ G R T + + E+ R +LPYDIDG V KV+ Sbjct: 232 GRVFSSHTEAYVFMQSQGIKTIANYRVCRTAEEVWAAIEEIGVRRGSLPYDIDGAVVKVN 291 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 F+++++LG A++PRW I++K+ ++ T L DI++ +GRTG +TP A +PV + G Sbjct: 292 SFAMREELGVTAKAPRWAIAYKYPPEEKETVLRDIELSVGRTGRITPTAVFDPVGLCGTR 351 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATLHN+DYI L DIR+GD +LV ++GE+IP+V ++ ++R +++P Sbjct: 352 VERATLHNQDYIDSL-----------DIRIGDTILVYKSGEIIPRVKAVLKDKRPQNSRP 400 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + P CP+C + VR+ + A RC + C AQ L +FVSR A +I+GLG Sbjct: 401 YVIPDVCPVCGAHAVREAD------TADMRCQNPV-CPAQIENHLLNFVSRSAMDIKGLG 453 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + A I A+IF+L ++ SV +I + Sbjct: 454 AAAVIALVH----AGYIHDVAEIFSLHEHREELVASGLI---GRAKSVDQRLAAIEASKQ 506 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 ER + LGI +G A +L + + S + + ++ VP +G+I Sbjct: 507 NPPERLLTGLGIAGIGRAAAAALMQEFSSIDALQEA-------ARESPERILAVPDMGEI 559 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 Q + EF+ + ++ L G + V + + K V TGTL + R + Sbjct: 560 TVQKLTEFFSSASACALLDRLRAAGVNFAGTRTERVGTALAGKSFVITGTLPTLSREECS 619 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 +T G +V +S+KTD ++ G+ GSKL+KA+ LG+ +++E ++ + L Sbjct: 620 ALITAHGGLVKGSVSKKTDYLVAGEAAGSKLKKAEDLGIPVLDEAALRAMISEEKDGL 677 >gi|240122918|ref|ZP_04735874.1| putative DNA ligase [Neisseria gonorrhoeae PID332] Length = 823 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 250/841 (29%), Positives = 380/841 (45%), Gaps = 163/841 (19%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L ++ + YY P I D+EYD L R +A+ P+L P+ P + Sbjct: 5 AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PDSPTQR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128 +GGE +V H +P LSL ++ + ++ F R+ D + + Sbjct: 62 VGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPEY 118 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187 +EPK DG I++ Y G V AA RGDG +GEDV+ ++ + IP L PE+IEV Sbjct: 119 VIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEV 178 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246 RGEV + K DF LN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 179 RGEVLMLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQ 238 Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVY 304 A+ + L + LGF + NG G V + E + PY+IDG V Sbjct: 239 QGGFEAEEHIQELAYFQELGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVV 298 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + Q++LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +G Sbjct: 299 KVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407 Query: 425 A--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGKL 452 +P+ P+ CPIC+S + R+ Sbjct: 408 ETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPTRCPICRSEIEREEGE----- 462 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA-DIF 511 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + + DI Sbjct: 463 -AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVRHFADLYRIDIP 521 Query: 512 TLQRRQQT--------------------STTKIENILGFGDVSVTNLYDSINKRRNISLE 551 TLQ+ ++T S +N N+ I + L Sbjct: 522 TLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPELA 581 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD----------------- 594 RF+F+LGIRHVG A++LA+ + + + + ++A D Sbjct: 582 RFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQ 641 Query: 595 ---WLSLIR--------------------------VPL--VGDIIAQAIVE--------- 614 L+ +P + + AQA+ E Sbjct: 642 QAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSIEGL 701 Query: 615 ------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGT 657 + +N +E L + E S + K V TGT Sbjct: 702 QNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGT 761 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L +R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L L Sbjct: 762 LPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTL 821 Query: 718 L 718 L Sbjct: 822 L 822 >gi|194097948|ref|YP_002000994.1| putative DNA ligase [Neisseria gonorrhoeae NCCP11945] gi|239998421|ref|ZP_04718345.1| putative DNA ligase [Neisseria gonorrhoeae 35/02] gi|254781380|sp|B4RJQ9|DNLJ_NEIG2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|193933238|gb|ACF29062.1| putative DNA ligase [Neisseria gonorrhoeae NCCP11945] gi|317163707|gb|ADV07248.1| putative DNA ligase [Neisseria gonorrhoeae TCDC-NG08107] Length = 823 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 250/841 (29%), Positives = 381/841 (45%), Gaps = 163/841 (19%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L ++ + YY P I D+EYD L R +A+ P+L P+ P + Sbjct: 5 AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PDSPTQR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128 +GGE +V H +P LSL ++ + ++ F R+ D + + Sbjct: 62 VGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPEY 118 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187 +EPK DG I++ Y G V AA RGDG +GEDV+ ++ + IP L PE+IEV Sbjct: 119 VIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVSNIPLRLHGENVPELIEV 178 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246 RGEV + K DF LN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 179 RGEVLMLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQ 238 Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVY 304 A+ + L + LGF + NG G V + E + PY+IDG+V Sbjct: 239 QGGFEAEEHIQELAYFQELGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEIDGMVV 298 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + Q++LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +G Sbjct: 299 KVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407 Query: 425 A--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGKL 452 +P+ P+ CPIC+S + R+ Sbjct: 408 ETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE----- 462 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA-DIF 511 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + + DI Sbjct: 463 -AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVRHFADLYRIDIP 521 Query: 512 TLQRRQQT--------------------STTKIENILGFGDVSVTNLYDSINKRRNISLE 551 TLQ+ ++T S +N N+ I + L Sbjct: 522 TLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPELA 581 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD----------------- 594 RF+F+LGIRHVG A++LA+ + + + + ++A D Sbjct: 582 RFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQ 641 Query: 595 ---WLSLIR--------------------------VPL--VGDIIAQAIVE--------- 614 L+ +P + + AQA+ E Sbjct: 642 QAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSIEGL 701 Query: 615 ------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGT 657 + +N +E L + E S + K V TGT Sbjct: 702 QNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGT 761 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L +R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L L Sbjct: 762 LPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTL 821 Query: 718 L 718 L Sbjct: 822 L 822 >gi|240015985|ref|ZP_04722525.1| putative DNA ligase [Neisseria gonorrhoeae FA6140] gi|240112339|ref|ZP_04726829.1| putative DNA ligase [Neisseria gonorrhoeae MS11] Length = 823 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 250/841 (29%), Positives = 381/841 (45%), Gaps = 163/841 (19%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L ++ + YY P I D+EYD L R +A+ P+L P+ P + Sbjct: 5 AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PDSPTQR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128 +GGE +V H +P LSL ++ + ++ F R+ D + + Sbjct: 62 VGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPEY 118 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187 +EPK DG I++ Y G V AA RGDG +GEDV+ ++ + IP L PE+IEV Sbjct: 119 VIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEV 178 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246 RGEV + K DF LN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 179 RGEVLMLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQ 238 Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVY 304 A+ + L + LGF + NG G V + E + PY+IDG+V Sbjct: 239 QGGFEAEEHIQELAYFQELGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEIDGMVV 298 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + Q++LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +G Sbjct: 299 KVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407 Query: 425 A--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGKL 452 +P+ P+ CPIC+S + R+ Sbjct: 408 ETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE----- 462 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA-DIF 511 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + + DI Sbjct: 463 -AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVRHFADLYRIDIP 521 Query: 512 TLQRRQQT--------------------STTKIENILGFGDVSVTNLYDSINKRRNISLE 551 TLQ+ ++T S +N N+ I + L Sbjct: 522 TLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPELA 581 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD----------------- 594 RF+F+LGIRHVG A++LA+ + + + + ++A D Sbjct: 582 RFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQ 641 Query: 595 ---WLSLIR--------------------------VPL--VGDIIAQAIVE--------- 614 L+ +P + + AQA+ E Sbjct: 642 QAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSIEGL 701 Query: 615 ------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGT 657 + +N +E L + E S + K V TGT Sbjct: 702 QNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGT 761 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L +R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L L Sbjct: 762 LPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTL 821 Query: 718 L 718 L Sbjct: 822 L 822 >gi|205372454|ref|ZP_03225267.1| NAD-dependent DNA ligase LigA [Bacillus coahuilensis m4-4] Length = 635 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 239/679 (35%), Positives = 358/679 (52%), Gaps = 53/679 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + A + + L Q ++ + YY KP + D EYD+ + AI FP+L P Sbjct: 1 MERQFAEERVKELHQTLNEWNYAYYVLDKPQVSDQEYDSKLQELIAIEQEFPELK---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +IG ++ KV H IP LSL +N EDL+ F +I ++ + E Sbjct: 58 DSPSERIGAQVLEGFTKVQHDIPMLSLGNAFNEEDLKDFDRKIRERVG----DNFAYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I+++YE G FV A RGDG GED++A +R I +IP L + IEVRGE Sbjct: 114 LKIDGLAISLKYEDGLFVQGATRGDGTIGEDITANLRTIRSIPLRLKDAV--TIEVRGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 ++ K F++LN+ G +P+ANPRNAA+G LR+L+P +R L+ F++ + E+ Sbjct: 172 FMPKRSFVSLNEAKDEAGEEPFANPRNAAAGSLRQLDPKIAASRNLDIFLYSIANGEEVG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + L + LGF N RQ T ++ Y E R L Y+IDG+V KV+ FS Sbjct: 232 MTEHAKALAYLDSLGFKTNPLRRQCETIEEVMMYVEEWTEKRQDLAYEIDGIVIKVNSFS 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q +LG A+SPRW I++KF ++ T L DI++ +GRTG +TP A LEPV + G + Sbjct: 292 QQDELGFTAKSPRWAIAYKFPAEEVITVLKDIELSVGRTGAVTPTAILEPVRVAGTTVQR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV + R + + F Sbjct: 352 ASLHNEDLIR-----------EKDIRIGDHVIVKKAGDIIPEVVSSLKERRTGEEKEFFM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP C S ++R + A RC C A E L HFVSR A NI+GLG++ Sbjct: 401 PSHCPECDSELIRIEDE------VALRCMNPK-CPALIRESLIHFVSRTAMNIDGLGEKV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + FK E I+ ADI+ L + Q + + G+ S NL +I+ R SL Sbjct: 454 ISQLFKEE----LIQDVADIYFLTQEQLIA------LERIGEKSALNLIQAIDASRENSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E+ +F LGIRHVGA+ A++LA+ + + N LIR+ +GD +A Sbjct: 504 EKLLFGLGIRHVGAKAAKTLAQEFDTLTNLQNASK----------EELIRIDEIGDKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-----SSEIENKKLVFTGTLQKIQRHK 665 +IV+++ P + L K + K + + K +V TG L + R++ Sbjct: 554 SIVQYFSMPEVHELIAELQKAEVNMQYKGPKKIAVEAGETSFAGKVVVLTGKLSILTRNE 613 Query: 666 AQEYVTQLGAVVSAILSRK 684 A+E + LG V+ +S+K Sbjct: 614 AKEKIELLGGKVTGSVSKK 632 >gi|15676564|ref|NP_273708.1| DNA ligase [Neisseria meningitidis MC58] gi|161869603|ref|YP_001598770.1| DNA ligase [Neisseria meningitidis 053442] gi|304388085|ref|ZP_07370214.1| NAD-dependent DNA ligase LigA [Neisseria meningitidis ATCC 13091] gi|81784869|sp|Q9K0E3|DNLJ_NEIMB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190359266|sp|A9M2U7|DNLJ_NEIM0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|7225892|gb|AAF41084.1| DNA ligase [Neisseria meningitidis MC58] gi|161595156|gb|ABX72816.1| DNA ligase [Neisseria meningitidis 053442] gi|304337942|gb|EFM04082.1| NAD-dependent DNA ligase LigA [Neisseria meningitidis ATCC 13091] gi|316983632|gb|EFV62613.1| DNA ligase, NAD-dependent [Neisseria meningitidis H44/76] gi|325139885|gb|EGC62416.1| DNA ligase, NAD-dependent [Neisseria meningitidis CU385] gi|325200648|gb|ADY96103.1| DNA ligase, NAD-dependent [Neisseria meningitidis H44/76] Length = 841 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 248/842 (29%), Positives = 381/842 (45%), Gaps = 167/842 (19%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + + L ++ + YY P + D+EYD L R +A+ P+L P+ P Sbjct: 26 AAQHICRLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQ 82 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127 ++GGE +V H +P LSL ++ + ++ F R+ D + Sbjct: 83 RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPE 139 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186 + +EPK DG I++ Y G V AA RGDG +GEDV+ I+ + IP L PE+IE Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245 VRGEV + K DF+ALN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 200 VRGEVLMLKADFVALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259 Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303 + A+ + L + LGF + NG V + E + PY+IDG+V Sbjct: 260 QQDGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMV 319 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV+ + Q +LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV + Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428 Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451 +P+ P+ CPIC+S + R+ Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538 Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550 L + + N+ I + L Sbjct: 539 RLDIPTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPVKWAENILAGIEASKTPEL 598 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD---------------- 594 RF+F+LGIRHVG A++LA+ + + + + ++A D Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658 Query: 595 ----WLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614 L+ +P + + AQA+ E Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEG 718 Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656 + P+N +E L + E S + K V TG Sbjct: 719 LQTDKALPTDWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838 Query: 717 LL 718 LL Sbjct: 839 LL 840 >gi|325127826|gb|EGC50734.1| DNA ligase, NAD-dependent [Neisseria meningitidis N1568] Length = 841 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 245/842 (29%), Positives = 379/842 (45%), Gaps = 167/842 (19%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + + L ++ + YY P + D+EYD L R +A+ P+L P+ P Sbjct: 26 AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQ 82 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127 ++GGE ++ H +P LSL ++ + ++ F R+ D Sbjct: 83 RVGGEPLAGFAEIRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGKPE 139 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186 + +EPK DG I++ Y G + AA RGDG +GEDV+ ++ + IP L PE+IE Sbjct: 140 YVIEPKFDGLAISLLYRDGVLIQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIE 199 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245 VRGEV + K DF ALN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259 Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303 + A+ + L + LGF + NG V + E + PY+IDG+V Sbjct: 260 QQDGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMV 319 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV+ + Q +LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV + Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428 Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451 +P+ P+ CPIC+S + R+ Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538 Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550 L + + N+ I + L Sbjct: 539 RLDIPTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPVKWAENILAGIEASKTPEL 598 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD---------------- 594 RF+F+LGIRHVG A++LA+ + + + + ++A D Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658 Query: 595 ----WLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614 L+ +P + + AQA+ E Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEG 718 Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656 + P+N +E L + E S + K V TG Sbjct: 719 LQTDKALPTDWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838 Query: 717 LL 718 LL Sbjct: 839 LL 840 >gi|240080125|ref|ZP_04724668.1| putative DNA ligase [Neisseria gonorrhoeae FA19] gi|240117363|ref|ZP_04731425.1| putative DNA ligase [Neisseria gonorrhoeae PID1] gi|260441105|ref|ZP_05794921.1| putative DNA ligase [Neisseria gonorrhoeae DGI2] Length = 823 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 250/841 (29%), Positives = 380/841 (45%), Gaps = 163/841 (19%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L ++ + YY P I D+EYD L R +A+ P+L P+ P + Sbjct: 5 AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PDSPTQR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128 +GGE +V H +P LSL ++ + ++ F R+ D + + Sbjct: 62 VGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPEY 118 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187 +EPK DG I++ Y G V AA RGDG +GEDV+ ++ + IP L PE+IEV Sbjct: 119 VIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEV 178 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246 RGEV + K DF LN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 179 RGEVLMLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQ 238 Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVY 304 A+ + L + LGF + NG G V + E + PY+IDG V Sbjct: 239 QGGFEAEEHIQELAYFQELGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVV 298 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + Q++LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +G Sbjct: 299 KVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407 Query: 425 A--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGKL 452 +P+ P+ CPIC+S + R+ Sbjct: 408 ETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE----- 462 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA-DIF 511 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + + DI Sbjct: 463 -AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVRHFADLYRIDIP 521 Query: 512 TLQRRQQT--------------------STTKIENILGFGDVSVTNLYDSINKRRNISLE 551 TLQ+ ++T S +N N+ I + L Sbjct: 522 TLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPELA 581 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD----------------- 594 RF+F+LGIRHVG A++LA+ + + + + ++A D Sbjct: 582 RFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQ 641 Query: 595 ---WLSLIR--------------------------VPL--VGDIIAQAIVE--------- 614 L+ +P + + AQA+ E Sbjct: 642 QAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSIEGL 701 Query: 615 ------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGT 657 + +N +E L + E S + K V TGT Sbjct: 702 QNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGT 761 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L +R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L L Sbjct: 762 LPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTL 821 Query: 718 L 718 L Sbjct: 822 L 822 >gi|325203753|gb|ADY99206.1| DNA ligase, NAD-dependent [Neisseria meningitidis M01-240355] Length = 841 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 246/842 (29%), Positives = 378/842 (44%), Gaps = 167/842 (19%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + + L ++ + YY P + D+EYD L R +A+ P+L P+ P Sbjct: 26 AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQ 82 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127 ++GGE +V H +P LSL ++ + ++ F R+ D + Sbjct: 83 RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPE 139 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186 + +EPK DG I++ Y G V AA RGDG +GEDV+ ++ + IP L PE+IE Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIE 199 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245 VRGEV + K DF LN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 200 VRGEVLMQKADFATLNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259 Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303 A+ + L + LGF + NG V + E + PY+IDG+V Sbjct: 260 QQGGFVAEEHIQELAYFQELGFSLPNGNFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMV 319 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV+ + Q +LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV + Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428 Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451 +P+ P+ CPIC+S + R+ Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538 Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550 L + + N+ I + L Sbjct: 539 RLDIPTLQKMKEAADKTVAESDQMPSEGSSVGASGKHKKQPTKWAENILAGIESGKTPEL 598 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD---------------- 594 RF+F+LGIRHVG A++LA+ + + + + ++A D Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658 Query: 595 ----WLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614 L+ +P + + AQA+ E Sbjct: 659 QQAMIDELLAAGVAPQAQAVSLPAAQYAEPQRWIARLPGFKISENKAQALWELAGKSIEG 718 Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656 + P+N +E L + E S + K V TG Sbjct: 719 LQTDKSLPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838 Query: 717 LL 718 LL Sbjct: 839 LL 840 >gi|254517673|ref|ZP_05129729.1| NAD-dependent DNA ligase LigA [Clostridium sp. 7_2_43FAA] gi|226911422|gb|EEH96623.1| NAD-dependent DNA ligase LigA [Clostridium sp. 7_2_43FAA] Length = 663 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 203/712 (28%), Positives = 356/712 (50%), Gaps = 57/712 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 ++ + L E++ + YY P + D +YD + P P Sbjct: 2 DKKQRIEELVNELNRYAYEYYSLDNPSVSDKDYDKKYDELKKLEEE----TNYVLPYSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK-----KDDNSIFFTL 130 ++G + K TH SL+K ++E+L+ + R +F ++ +D + L Sbjct: 58 LRVGDRVLEGFNKYTHKARLWSLDKAQSLEELKDWHNRNLKFIREMNSRGEDLPEPRYVL 117 Query: 131 EPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 K DG + + Y E G AA RG+G GE+VSA ++ I +IP L +N ++ E+ G Sbjct: 118 TKKFDGLTVNLTYDENGILASAATRGNGEVGEEVSAQVKTIKSIP--LKINNDDLFEIHG 175 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSE 248 E ++ F N P N RN A+G LR LN + R L+ F + +G Sbjct: 176 EAIMTTEAFENYNKNA----DVPLKNLRNGAAGALRNLNLKETAKRNLSAFFYDVGYKEG 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K EML ++ G P+++ +R T I + ++ IR L YDIDG+V +D+ Sbjct: 232 EGFKTYEEMLNFIKDKGLPMDDYIRYCTTIEEIEKEIDYIREIRFDLNYDIDGVVIAIDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 ++ +G + P+W I++KF ++A+T+L+D++ +GR+G + P A L+P+++ G + Sbjct: 292 IRTRELMGYTVKFPKWAIAYKFEAQEATTKLVDVEWNVGRSGRVGPTAILDPIDLAGVTV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATL+N D I+ + +R+G V V+R+ +VIP+++ ++ Sbjct: 352 KRATLNNIDDIRR-----------KGVRIGAEVFVRRSNDVIPEIMGVVTESLEGTE-EI 399 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 + P CP C + +V++ + C L+C Q ++ + H+ SRDA NIEG + Sbjct: 400 NVPEVCPACGAHLVQN--------GVHYFCENTLSCKPQMVKTIVHYASRDAMNIEGFSE 451 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + F+ D I+ AD++ LQ+ ++ + FG NL D++ K ++ Sbjct: 452 KTAEQLFEKLD----IKSIADLYKLQKE------ELLQLDKFGPKKAQNLLDAVEKSKDC 501 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L RFI+SLGI +VG + A+ L + S + + L+ V VG I+ Sbjct: 502 ELYRFIYSLGIPNVGVKTAKDLVNKFKSLEGLKSA----------SFDDLVSVQDVGGIV 551 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A+ ++EF++ + + + LL+ ++ +SS E K +V TGTLQ R + + Sbjct: 552 AKCVLEFFKEEKAVNTINELLELGVNPKFEEKQIISSPFEGKTVVVTGTLQNYSRGEIKA 611 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA VS +S+KTD +I G+ GSKL+KA +LGVK++NE++F ++++ Sbjct: 612 KLELLGAKVSGSVSKKTDFVIAGEEAGSKLDKAIELGVKVLNEDEFEDIIKE 663 >gi|283850424|ref|ZP_06367713.1| DNA ligase, NAD-dependent [Desulfovibrio sp. FW1012B] gi|283574450|gb|EFC22421.1| DNA ligase, NAD-dependent [Desulfovibrio sp. FW1012B] Length = 697 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 244/723 (33%), Positives = 365/723 (50%), Gaps = 57/723 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S R L++L I +H+ YY P I D+ YDAL R + A P+LA DPN Sbjct: 4 SDSDPRARLAALRDLIHFHNHRYYVLDDPQIEDAAYDALYRELVTLEAAHPELA---DPN 60 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-SIFFTLE 131 P ++GG + S H + SL+ + + + F+TR ++D F ++ Sbjct: 61 SPTRRVGGAVLPSFDSKAHGLRMYSLDNAMSETEWQDFLTRAANKLDREDVAFERTFWVD 120 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-------RVLSLNIPEI 184 PK DG + I YEKG + A RGDG GEDV+ +R + +P R L +PE+ Sbjct: 121 PKFDGLALEILYEKGVYAGALTRGDGVRGEDVTENVRTVRNVPLDLRPHARQAGLPVPEL 180 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL 243 +EVRGEV +++ F LN+ G K +ANPRNAA+G +R+L+ +R L FF +GL Sbjct: 181 LEVRGEVVMTRQAFFELNERQREQGGKIFANPRNAAAGSVRQLDSRISASRPLTFFAYGL 240 Query: 244 GKTSE----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 G+ ++ +R LG PV + R G+ Y+ + R LP++I Sbjct: 241 GRQDWGEAASPWTTHSGVMAGLRSLGLPVASEGRMVEA-EGVYPYFQALGLRRQELPFEI 299 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KVD LQ+ LG R+PR+ ++ KF +A T L ID+Q+GRTG+LTPVA LE Sbjct: 300 DGVVAKVDSLPLQEALGFTDRAPRFALALKFPAHEAETVLRQIDVQVGRTGVLTPVALLE 359 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV++ G + ATLHNED IK +D+R GD V+V+RAG+VIP+VV +++ Sbjct: 360 PVSLAGVTVARATLHNEDEIK-----------AKDLREGDTVVVRRAGDVIPEVVKVVLE 408 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R DA F FP CP C S VRD AA RC LAC A + +FVS+ Sbjct: 409 KRPADAAAFEFPHTCPACGSPAVRDEG------AAAWRCVN-LACPAMLRRGIAYFVSKA 461 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 +IEGLG++ ++ ++ PAD+F+L ++ + S +N Sbjct: 462 GLDIEGLGQKWVETLIAK----GMVKTPADLFSLTEA------ELLFLDRMAAKSASNFV 511 Query: 540 DSINKRRNISL-ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 ++ R + ++ I +LGIR VG AR+LA ++ A + Sbjct: 512 AAVEAARQKATLQKLIAALGIRQVGTRTARTLADHFRDLDALAAATAEELTAL------- 564 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGT 657 P +G +A +I EF+ N N V + ++ + K+ +FTG Sbjct: 565 ---PDIGPEVAASIREFFDNEANRQLVARFKDLGLWPVSEPKPIASAAPLAGKRFLFTGA 621 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L + R AQ V G + + +S+K D ++ G +PGSKL KAQ LGV ++ E+F L Sbjct: 622 LPDMTREAAQALVEAAGGRIVSSVSKKLDYLVAGTDPGSKLAKAQALGVTVLTPEEFSSL 681 Query: 718 LQQ 720 L + Sbjct: 682 LAE 684 >gi|304405678|ref|ZP_07387337.1| DNA ligase, NAD-dependent [Paenibacillus curdlanolyticus YK9] gi|304345717|gb|EFM11552.1| DNA ligase, NAD-dependent [Paenibacillus curdlanolyticus YK9] Length = 689 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 199/735 (27%), Positives = 335/735 (45%), Gaps = 73/735 (9%) Query: 10 EALSIEQAR--------KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 L+ ++A + + L EI H YY +P I D+E+D L A+ Sbjct: 3 SRLNEQEAAIAANPQQLERMRKLADEIERHSYSYYTLDRPTISDAEFDKLYDELVALEKT 62 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ-- 119 + P ++G E+ + H SL+K N+EDLR + R+ + Sbjct: 63 ----IGIVLEHSPTQRVGNELLKGFDQHRHRARLWSLDKAQNVEDLRAWNQRVQKGINDW 118 Query: 120 ------KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTI 173 + + LE K DG + + YE G+ + AA RG+G GE + A ++ I ++ Sbjct: 119 NSKHPDETPLPEPSYVLELKYDGLTLNLTYENGRLIQAATRGNGVVGEGILAQVKTIRSV 178 Query: 174 PRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DI 232 P + I+EV+GE ++ + A N +P N RNAA+G LR NP Sbjct: 179 PLTIP-FRDGIVEVQGEGIMNLSVLEAYNQTA----EEPLKNARNAAAGALRNQNPKITA 233 Query: 233 TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR 292 R LN F + +G + K ++ Q + F VN V ++ + + +R Sbjct: 234 ERKLNAFFYNIGHAEGVSFKTHQQLQQFLIENKFKVNPYVTYHDSMESVEEELLRVTEMR 293 Query: 293 STLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352 TL Y IDG V K+ + ++ LG + PRW ++ KF ++ +T L + ++GRTG + Sbjct: 294 PTLDYLIDGAVVKLVDMRTREALGYTDKFPRWAVAFKFEAEETTTVLESVSWEVGRTGKI 353 Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412 TPVAR+EPV + G + N TL+N G + R +G RV ++R+ +VIP+ Sbjct: 354 TPVARVEPVELAGVTVQNCTLNNM---------GDIDRKNLKHALGTRVFIRRSNDVIPE 404 Query: 413 VVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472 ++ + + PS CP C + + + A C L C Q + R+ Sbjct: 405 ILGKADD---EEGTEIEVPSACPSCGTALEQR--------GAHLFCNNKLGCKPQMIGRI 453 Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGD 532 HF SRDA +IE + ++ +R PAD++TL + FG+ Sbjct: 454 THFASRDAMDIETFSVMTAEQLYEECG----VRDPADLYTLGYDDLIK------LERFGE 503 Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592 L ++ K ++ L F+F+LGI + G + LA ++ S Q Sbjct: 504 RKAQKLIEAFEKSKSRDLAAFLFALGIPNTGKATTKVLADHFGSLDAVLQATE------- 556 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR------HEKNVSSE 646 L+++P +G I+A +IV F+ +P ++ + ++ + + V + Sbjct: 557 ---EQLVQLPDIGGIVADSIVSFFADPLMQASISKMREQGVRAEAEIRRVPSAIEGVDNV 613 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 K +V TGTL + R +A + + LGA V+ +S+KTD +I G++ GSKL KAQ LG+ Sbjct: 614 FTGKTVVLTGTLSTMTRDEAAKKLEALGAKVTGSVSKKTDFVIAGESAGSKLTKAQSLGI 673 Query: 707 KIM-NEEQFLFLLQQ 720 ++ +E F +L + Sbjct: 674 AVIEDEALFKQMLGE 688 >gi|332665881|ref|YP_004448669.1| DNA ligase [Haliscomenobacter hydrossis DSM 1100] gi|332334695|gb|AEE51796.1| DNA ligase [Haliscomenobacter hydrossis DSM 1100] Length = 711 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 221/719 (30%), Positives = 363/719 (50%), Gaps = 54/719 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + L I YH+ YY + P++ D EYD L + + + P+L + P + Sbjct: 30 AQQHAELCGLIIYHEWRYYIQNDPVLSDYEYDQLFKLLERLEEVHPELV---SADSPSQR 86 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 + ++ +V H IP LSL +N EDL + I RF D + + +EPK DG Sbjct: 87 VSADLTEDFSQVEHLIPMLSLANSYNAEDLNDWDASIKRFLNIDPDTDLDYGVEPKFDGG 146 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISK 195 I + YE V AA RG+G GE+++ + I +IP + +E+RGEV I K Sbjct: 147 SIALVYENDVLVRAATRGNGIIGEEITNNAKVIRSIPLRAEFSKYGIHRVELRGEVLIRK 206 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--------TRYLNFFVHGLGKTS 247 + F +N + A G +AN RN A+G LR +P ++ L + G Sbjct: 207 DIFEKMNAKRAAEGITLFANARNTATGGLRIKDPKEVAKRGLEAFIYTLGYATDQAGNNM 266 Query: 248 EIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 E L+ + LGF V + ++ + N + R Y+IDG+V KV Sbjct: 267 LNQFATHLESLELLEKLGFKVPVQERKLCKNIQEVIDFCNYWQQQRDGYAYEIDGMVAKV 326 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + LQ++ G + PRW I+ KF KQA+++LL+++ Q+G+ G +TPVA+LEPV + G Sbjct: 327 NSRELQERSGFTSHHPRWAIAFKFQAKQATSKLLNVEYQVGKIGSITPVAKLEPVQLAGV 386 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++ +LHNED+I RD+R+GD VLV+RAG+VIP +V + R Sbjct: 387 TVSSVSLHNEDFITS-----------RDLRLGDTVLVERAGDVIPYIVKAMDELRDGSEV 435 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP FCPI + +L + + AA RC + + H S+DA +I+G+ Sbjct: 436 PIVFPQFCPINDTDTPVELLREGEE--AAWRCPNCVCGQQDLQRIIFHV-SKDAMDIDGM 492 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 GKQ ++ FF+ +R AD++ L T++ + GFG+ S T L +I K + Sbjct: 493 GKQIVERFFE----LGWVRNFADVYNL------DFTQVAQLEGFGEKSATKLQAAIEKAK 542 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + R ++SL I H+G ++++ LA EIN+++ + ++ VG Sbjct: 543 KNPISRVLYSLSIHHLGKKVSKLLA----------AEINHVLDLKDWQIEDYTKIKDVGP 592 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSP-----SIGRHEKNVSSEIENKKLVFTGTLQKI 661 ++A +EF+QN NI ++ + + + + K ++FTG+L K+ Sbjct: 593 VVAANAIEFFQNELNIELIQQMEALGVNLHQTEEDKPKAASADAPLAGKTILFTGSLAKM 652 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQ 719 R +AQE GA + +S+ DI++VG+ GSKL+KA++LG V I+ E++FL +L+ Sbjct: 653 GRKEAQEKAEAAGAKNISAVSKNLDILVVGEEAGSKLKKARELGTVMILTEDEFLAMLE 711 >gi|168211265|ref|ZP_02636890.1| DNA ligase, NAD-dependent [Clostridium perfringens B str. ATCC 3626] gi|170710700|gb|EDT22882.1| DNA ligase, NAD-dependent [Clostridium perfringens B str. ATCC 3626] Length = 662 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 209/711 (29%), Positives = 353/711 (49%), Gaps = 58/711 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +K + L +E++ + YY + D +YD + + P P Sbjct: 2 DKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE----TGYKLPYSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNSIFFT 129 ++G + K TH SL+K +E++R++ R +F ++ ++ + + Sbjct: 58 QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKYI 117 Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 L K DG I + Y E G V A RG G GEDV+A ++ I +IP L ++ + +E+ Sbjct: 118 LTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEIH 175 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247 GE ++ F N E P N RN A+G LR LN + R L+ F + +G Sbjct: 176 GEAIMTTEAFEKYNSEA----DTPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKE 231 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 K EML ++ GFP+++ +R+ T I + ++ IR L YDIDGLV +D Sbjct: 232 GAPFKTYMEMLNFIKTKGFPMDDYIRKCTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAID 291 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + ++ LG + P+W I++KF ++A+T+LLD++ +GR+G ++P A LEPV + G Sbjct: 292 DIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVT 351 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATL+N D I + +R+G V V+R+ +VIP+++ ++ + Sbjct: 352 VKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LEGTKE 399 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P CP C + +V + C L C Q ++ + HF R+A NI G Sbjct: 400 IEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFS 451 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ + F+ D IR +D++ L+ K+ ++ FG NL D+I K ++ Sbjct: 452 EKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKSKD 501 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +LE F++SLGI +VG + A+ L K + S +N + + L+ V VGDI Sbjct: 502 CTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVGDI 551 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +A++I+EF++ R + + LL ++ + S K +V TGTL+ R + Sbjct: 552 VARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVVVTGTLENYSRTSIK 611 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 E + LGA VS +S+KTD +I G+ GSK +KA+ LGV I++EE+F ++ Sbjct: 612 EKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEFENMI 662 >gi|332638905|ref|ZP_08417768.1| NAD-dependent DNA ligase [Weissella cibaria KACC 11862] Length = 678 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 223/716 (31%), Positives = 369/716 (51%), Gaps = 52/716 (7%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 I +++ +A+ E+ +L+Q++ YY+ P + D+ YD R +A+ A+P+L Sbjct: 4 FQDIATMTVIEAKAEIDALQQDLKQWAQEYYENDAPSVEDAVYDREYNRLEALEAAYPEL 63 Query: 66 ARSEDPNGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 P+ ++GG+ L KV H IP LSL ++++++L ++ + + + Sbjct: 64 V---TPDSITQQVGGKATKSDLPKVVHDIPMLSLGDVFSLDELYDWLATTQKSF----NT 116 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 + + E KIDG I++ YE G+ + A+ RGDG+ GEDV+A +R I IP+ L+ I Sbjct: 117 PLSYNAELKIDGLAISLVYENGELIQASTRGDGNIGEDVTANVRQIKRIPKQLNEPIS-- 174 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NFFVHG 242 +EVRGEVY+ K F+ LN++ G +ANPRNAA+G LR+L+ + F Sbjct: 175 VEVRGEVYMPKAAFVTLNEQRERDGLSTFANPRNAAAGSLRQLDVKVTKQRQLDAFLYAA 234 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + + + Q ++LQ++ LG P N + I +Y N+ + R L Y IDG+ Sbjct: 235 VDAENTLGVTTQADLLQRLAELGLPANPTNAVVASEADIAAYINDETATRDELAYGIDGI 294 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KV+ + ++LG + PRW I++KF ++A T + DI+ +GRTG +TP A ++PV Sbjct: 295 VIKVNSLAYHEELGNTVKVPRWAIAYKFPPEEAHTVVRDIEWTVGRTGAVTPTAVMDPVQ 354 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G + A+LHN DY+ +DIR+GD V + +AG++IP++ +I+++R Sbjct: 355 LAGTTVARASLHNPDYL-----------NSKDIRIGDTVTLHKAGDIIPEIGQVILSQRP 403 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 D++ + P CP C +V A RC C AQ E L HF SRDA N Sbjct: 404 TDSEVYQMPLGCPACGQELVHIDGE------VALRCINPF-CPAQVQESLTHFASRDAMN 456 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+GLG + + I +D++ L Q + + FG+ S NL +I Sbjct: 457 IDGLGPKIVGQLLSRN----MISQVSDLYRLTFEQLLT------LDKFGETSANNLLRAI 506 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + S+ER +F LGIR+VGA+ A+++A +++ A + +P Sbjct: 507 ENSKQNSVERLLFGLGIRNVGAKAAKTIAAKFVTLDAIAHA----------SADDIAELP 556 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQK 660 +G II +I +++ V + + E + +KK+V TG L Sbjct: 557 GMGLIIGHSIAQYFDTEHAQELVADFEQLGVNTRYTQAVEIATDTVFSDKKVVLTGKLAL 616 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 R +A ++ GA VS +S+KTD++I G + GSKL KAQ+LG++I +E Q Sbjct: 617 FSRSEATAWLESQGATVSGSVSKKTDLLIAGADAGSKLTKAQELGIEIWSEAQLRD 672 >gi|29840375|ref|NP_829481.1| NAD-dependent DNA ligase LigA [Chlamydophila caviae GPIC] gi|75539575|sp|Q822R2|DNLJ_CHLCV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|29834724|gb|AAP05359.1| DNA ligase [Chlamydophila caviae GPIC] Length = 662 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 234/701 (33%), Positives = 373/701 (53%), Gaps = 48/701 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R++ SL +E+ D CYY +I D +YD ++ AI P+ P + Sbjct: 7 REQYLSLCKELEKDDYCYYVLHNAVISDYDYDMKMQKLLAIEAQHPEWKVLW---SPSMR 63 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++ + V HS P LS+ + +E+L F +R+ + + +TLE KIDG Sbjct: 64 LGDRVSGNFPVVAHSHPMLSIANAYTLEELNDFFSRVEKTLG----YAPIYTLELKIDGI 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + IRYE+G V A RG+G GED++A IR I ++P L + PE +EVRGEV+ + Sbjct: 120 AVAIRYEQGILVQALSRGNGQKGEDITANIRTIRSLPLRLPKDAPEFLEVRGEVFFKRET 179 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N + +ANPRNAA G L+ L+ + N + G S+ + Y+ Sbjct: 180 FEQINAAQRQAEKPEFANPRNAAGGTLKLLSAKEA-AQRNLELSVYGSLSDENTESHYDN 238 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L + GFP+ RQ T +V +E++ +R LP +IDG+V KVD+ QK LG Sbjct: 239 LMLCKRWGFPIFGQPRQCQTIAEVVKSLDEIEGLRDQLPMEIDGVVIKVDDVEAQKALGM 298 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+ RW +++K+A ++A T L +I IQ+GRTG+LTPVA+L PV + G+ ++ A+L+NE+ Sbjct: 299 TAKHYRWALAYKYAPERAETILENILIQVGRTGVLTPVAKLSPVFLSGSRVSRASLYNEE 358 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ +DIR+GD V V++ GE+IPKVV + + +R QP+ P FCP+C Sbjct: 359 EIER-----------KDIRIGDTVYVEKGGEIIPKVVGVCLEKRPEGTQPWVMPEFCPVC 407 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +V R+ + + RCT L CSA +E+++ FV R A +I+ LG++ + F Sbjct: 408 HGKVTRESDK------VSVRCTNPL-CSAGAIEKIRFFVGRGALDIDHLGEKVITKLFD- 459 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I DIF + + GF D SV N+ SI K + L+RFI +L Sbjct: 460 ---LGVIHRCCDIFKITEEDL------LQVPGFKDKSVKNVLKSIEKAKQAPLDRFIAAL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI +VG +A +LA+++L+ + L + +GD +A++I ++ Sbjct: 511 GIPYVGVRVASALAQHFLNLEAVMGA----------SLEELKSIEGIGDKVAESIEAYFN 560 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 I ++ +L + H + SS K V TGTL+K+ R +A+ + G V Sbjct: 561 QQDTIEEIQKMLSLGVNVLPYHRE--SSSCLGKTFVITGTLKKMTRSEAEASIRNCGGKV 618 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +S+ TD ++VG++PGSK +KAQ+L + I+NE L +L Sbjct: 619 GSSVSKSTDYLVVGEDPGSKFKKAQELEIPILNENDLLKIL 659 >gi|240115079|ref|ZP_04729141.1| putative DNA ligase [Neisseria gonorrhoeae PID18] gi|240125172|ref|ZP_04738058.1| putative DNA ligase [Neisseria gonorrhoeae SK-92-679] gi|240127627|ref|ZP_04740288.1| putative DNA ligase [Neisseria gonorrhoeae SK-93-1035] Length = 823 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 251/841 (29%), Positives = 381/841 (45%), Gaps = 163/841 (19%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L ++ + YY P I D+EYD L R +A+ P+L P+ P + Sbjct: 5 AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PDSPTQR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128 +GGE +V H +P LSL ++ + ++ F R+ D + + Sbjct: 62 VGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPEY 118 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187 +EPK DG I++ Y G V AA RGDG +GEDV+ ++ + IP L PE+IEV Sbjct: 119 VIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVSNIPLRLHGENVPELIEV 178 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246 RGEV + K DF ALN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 179 RGEVLMLKADFAALNQRQTENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVARQ 238 Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVY 304 + A+ + L + LGF + NG G V + E + PY+IDG V Sbjct: 239 QGGLIAEEHIQELAYFQALGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVV 298 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + Q +LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +G Sbjct: 299 KVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407 Query: 425 A--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGKL 452 +P+ P+ CPIC+S + R+ Sbjct: 408 ETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE----- 462 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA-DIF 511 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + + DI Sbjct: 463 -AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVRHFADLYRIDIP 521 Query: 512 TLQRRQQT--------------------STTKIENILGFGDVSVTNLYDSINKRRNISLE 551 TLQ+ ++T S +N N+ I + L Sbjct: 522 TLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPELA 581 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD----------------- 594 RF+F+LGIRHVG A++LA+ + + + + ++A D Sbjct: 582 RFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQ 641 Query: 595 ---WLSLIR--------------------------VPL--VGDIIAQAIVE--------- 614 L+ +P + + AQA+ E Sbjct: 642 QAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSIEGL 701 Query: 615 ------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGT 657 + +N +E L + E S + K V TGT Sbjct: 702 QNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGT 761 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L +R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L L Sbjct: 762 LPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTL 821 Query: 718 L 718 L Sbjct: 822 L 822 >gi|89256066|ref|YP_513428.1| DNA ligase [Francisella tularensis subsp. holarctica LVS] gi|167009870|ref|ZP_02274801.1| DNA ligase [Francisella tularensis subsp. holarctica FSC200] gi|254367402|ref|ZP_04983428.1| DNA ligase [Francisella tularensis subsp. holarctica 257] gi|123401612|sp|Q2A4C4|DNLJ_FRATH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|89143897|emb|CAJ79115.1| DNA ligase [Francisella tularensis subsp. holarctica LVS] gi|134253218|gb|EBA52312.1| DNA ligase [Francisella tularensis subsp. holarctica 257] Length = 678 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 255/713 (35%), Positives = 391/713 (54%), Gaps = 54/713 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ + + + L +S Y+ KPII DS+YD L R + + P Sbjct: 14 LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N L+++GGE+ + H SL ++++E+LR F +I I E Sbjct: 71 NSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDIELECE 122 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG I+I Y+ GKF YA RGDG GE VS ++ I +P + N PE +EVRGE Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT--S 247 + + K FL+LN+ M K +ANPRNAA+G +R L+ R L + +G+G Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 ++ + Q+E++Q ++ GF +++ + A F + Y+++M R+ L YDIDGLV+KV+ Sbjct: 243 FVYPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQ +G AR P+W I++KF ++ + +L+++ Q+GRTG +TPVARL+PV +GG + Sbjct: 303 NIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN + IK +DIRVGDRV+V+RAG+VIP+VV + R DAQ Sbjct: 363 VSNATLHNINEIKR-----------KDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQI 411 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P+ CP+C S++ + A +RCTGG C AQ ERLKHFVSR A +I+ LG Sbjct: 412 VEMPTNCPVCDSKI------ENVNDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ A I+ PADI+ L Q T + S N+ DSI K + Sbjct: 466 AKLIEQLV----AANLIKYPADIYKLNFEQLTG------LERMAAKSSQNVLDSITKSKE 515 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SL RFIF++GI+ +G + +LA ++ S ++F + LI + +G+I Sbjct: 516 PSLARFIFAIGIKDIGEVSSDALANHFGSLESFRDA----------KFEELIEINYIGEI 565 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 IA IV F+ + NI VE L + + E + K +V TG+ + R + Sbjct: 566 IANNIVSFWHDSLNIKIVEEFLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ E+ LL Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVILEDNLKDLL 678 >gi|240013546|ref|ZP_04720459.1| putative DNA ligase [Neisseria gonorrhoeae DGI18] gi|240120618|ref|ZP_04733580.1| putative DNA ligase [Neisseria gonorrhoeae PID24-1] Length = 823 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 251/841 (29%), Positives = 381/841 (45%), Gaps = 163/841 (19%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L ++ + YY P I D+EYD L R +A+ P+L P+ P + Sbjct: 5 AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PDSPTQR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128 +GGE +V H +P LSL ++ + ++ F R+ D + + Sbjct: 62 VGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPEY 118 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187 +EPK DG I++ Y G V AA RGDG +GEDV+ ++ + IP L PE+IEV Sbjct: 119 VIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEV 178 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246 RGEV + K DF ALN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 179 RGEVLMLKADFAALNQRQTENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVARQ 238 Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVY 304 + A+ + L + LGF + NG G V + E + PY+IDG V Sbjct: 239 QGGLIAEEHIQELAYFQALGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVV 298 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + Q +LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +G Sbjct: 299 KVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407 Query: 425 A--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGKL 452 +P+ P+ CPIC+S + R+ Sbjct: 408 ETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE----- 462 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA-DIF 511 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + + DI Sbjct: 463 -AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVRHFADLYRIDIP 521 Query: 512 TLQRRQQT--------------------STTKIENILGFGDVSVTNLYDSINKRRNISLE 551 TLQ+ ++T S +N N+ I + L Sbjct: 522 TLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPELA 581 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD----------------- 594 RF+F+LGIRHVG A++LA+ + + + + ++A D Sbjct: 582 RFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQ 641 Query: 595 ---WLSLIR--------------------------VPL--VGDIIAQAIVE--------- 614 L+ +P + + AQA+ E Sbjct: 642 QAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSIEGL 701 Query: 615 ------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGT 657 + +N +E L + E S + K V TGT Sbjct: 702 QNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGT 761 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L +R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L L Sbjct: 762 LPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTL 821 Query: 718 L 718 L Sbjct: 822 L 822 >gi|166215590|sp|Q8XI62|DNLJ_CLOPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 662 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 209/711 (29%), Positives = 352/711 (49%), Gaps = 58/711 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +K + L +E++ + YY + D +YD + + P P Sbjct: 2 DKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE----TGYKLPYSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNSIFFT 129 ++G + K TH SL+K +E++R++ R +F ++ ++ + + Sbjct: 58 QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKYI 117 Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 L K DG I + Y E G V A RG G GEDV+A ++ I +IP L ++ + +E+ Sbjct: 118 LTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEIH 175 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247 GE ++ F N E P N RN A+G LR LN + R L+ F + +G Sbjct: 176 GEAIMTTEAFEKYNSEA----ETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKE 231 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 K EML ++ GFP+++ +R+ T I + ++ IR L YDIDGLV +D Sbjct: 232 GAPFKTYMEMLNFIKTKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAID 291 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + LG + P+W I++KF ++A+T+LLD++ +GR+G ++P A LEPV + G Sbjct: 292 DIRTRDLLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVT 351 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATL+N D I + +R+G V V+R+ +VIP+++ ++ + Sbjct: 352 VKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LEGTKE 399 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P CP C + +V + C L C Q ++ + HF R+A NI G Sbjct: 400 IEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFS 451 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ + F+ D IR +D++ L+ K+ ++ FG NL D+I K ++ Sbjct: 452 EKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKSKD 501 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +LE F++SLGI +VG + A+ L K + S +N + + L+ V VGDI Sbjct: 502 CTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVGDI 551 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +A++I+EF++ R + + LL ++ + S K +V TGTL+ R + Sbjct: 552 VARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVVVTGTLENYSRTSIK 611 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 E + LGA VS +S+KTD +I G+ GSK +KA+ LGV I++EE+F ++ Sbjct: 612 EKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEFENMI 662 >gi|325197886|gb|ADY93342.1| DNA ligase, NAD-dependent [Neisseria meningitidis G2136] Length = 841 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 249/842 (29%), Positives = 380/842 (45%), Gaps = 167/842 (19%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + + L ++ + YY P + D+EYD L R +A+ P+L P+ P Sbjct: 26 AAQHICRLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQ 82 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127 ++GGE +V H +P LSL ++ + ++ F R+ D + Sbjct: 83 RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPE 139 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186 + +EPK DG I++ Y G V AA RGDG +GEDV+ I+ + IP L PE+IE Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245 VRGEV + K DF ALN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259 Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303 A+ + L + LGF + NG V + E + PY+IDG+V Sbjct: 260 RQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMV 319 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV+ + Q++LG +R+PRW I+HKF ++A T + ID+QIGRTG +TPVARL+PV + Sbjct: 320 VKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTVVEAIDVQIGRTGAVTPVARLQPVFV 379 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428 Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451 +P+ P+ CPIC+S + R+ Sbjct: 429 QETAVAVSDGIGHRQDDLFAEAPAANQTQSVPLYKPYRLPTHCPICRSEIEREEGE---- 484 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538 Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550 L + + N+ I + L Sbjct: 539 RLDIPTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPTKWAENILAGIESGKTPEL 598 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD---------------- 594 RF+F+LGIRHVG A++LA+ + + + + ++A D Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658 Query: 595 ----WLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614 L+ +P + + AQA+ E Sbjct: 659 QQAMIDELLAAGVAPQAQAVSLPAAQYAEPQRWIARLPGFKISENKAQALWELAGKSIEG 718 Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656 + P+N +E L + E S + K V TG Sbjct: 719 LQTDKSLPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838 Query: 717 LL 718 LL Sbjct: 839 LL 840 >gi|156502078|ref|YP_001428143.1| DNA ligase [Francisella tularensis subsp. holarctica FTNF002-00] gi|290954221|ref|ZP_06558842.1| DNA ligase [Francisella tularensis subsp. holarctica URFT1] gi|295312341|ref|ZP_06803126.1| DNA ligase [Francisella tularensis subsp. holarctica URFT1] gi|166214810|sp|A7NB34|DNLJ_FRATF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|156252681|gb|ABU61187.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. holarctica FTNF002-00] Length = 678 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 254/713 (35%), Positives = 391/713 (54%), Gaps = 54/713 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ + + + L +S Y+ KPII DS+YD L R + + P Sbjct: 14 LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N L+++GGE+ + H SL ++++E+LR F +I I E Sbjct: 71 NSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDIELECE 122 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG I+I Y+ GKF YA RGDG GE VS ++ I +P + N PE +EVRGE Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT--S 247 + + K FL+LN+ M K +ANPRNAA+G +R L+ R L + +G+G Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 ++ + Q+E++Q ++ GF +++ + A F + Y+++M R+ L YDIDGLV+K++ Sbjct: 243 FVYPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKIN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQ +G AR P+W I++KF ++ + +L+++ Q+GRTG +TPVARL+PV +GG + Sbjct: 303 NIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN + IK +DIRVGDRV+V+RAG+VIP+VV + R DAQ Sbjct: 363 VSNATLHNINEIKR-----------KDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQI 411 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P+ CP+C S++ + A +RCTGG C AQ ERLKHFVSR A +I+ LG Sbjct: 412 VEMPTNCPVCDSKI------ENVNDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ A I+ PADI+ L Q T + S N+ DSI K + Sbjct: 466 AKLIEQLV----AANLIKYPADIYKLNFEQLTG------LERMAAKSSQNVLDSITKSKE 515 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SL RFIF++GI+ +G + +LA ++ S ++F + LI + +G+I Sbjct: 516 PSLARFIFAIGIKDIGEVSSDALANHFGSLESFRDA----------KFEELIEINYIGEI 565 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 IA IV F+ + NI VE L + + E + K +V TG+ + R + Sbjct: 566 IANNIVSFWHDSLNIKIVEEFLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ E+ LL Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVILEDNLKDLL 678 >gi|182625562|ref|ZP_02953333.1| DNA ligase, NAD-dependent [Clostridium perfringens D str. JGS1721] gi|177909250|gb|EDT71715.1| DNA ligase, NAD-dependent [Clostridium perfringens D str. JGS1721] Length = 662 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 209/711 (29%), Positives = 353/711 (49%), Gaps = 58/711 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +K + L +E++ + YY + D +YD + + P P Sbjct: 2 DKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE----TGYKLPYSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNSIFFT 129 ++G + K TH SL+K +E++R++ R +F ++ ++ + + Sbjct: 58 QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKYI 117 Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 L K DG I + Y E G V A RG G GEDV+A ++ I +IP L ++ + +E+ Sbjct: 118 LTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEIH 175 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247 GE ++ F N E P N RN A+G LR LN + R L+ F + +G Sbjct: 176 GEAIMTTEAFEKYNSEA----ETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKE 231 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 K EML ++ GFP+++ +R+ T I + ++ IR L YDIDGLV +D Sbjct: 232 GAPFKTYMEMLNFIKTKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAID 291 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + ++ LG + P+W I++KF ++A+T+LLD++ +GR+G ++P A LEPV + G Sbjct: 292 DIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVT 351 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATL+N D I + +R+G V V+R+ +VIP+++ ++ + Sbjct: 352 VKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LEGTKE 399 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P CP C + +V + C L C Q ++ + HF R+A NI G Sbjct: 400 IEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFS 451 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ + F+ D IR +D++ L+ K+ ++ FG NL D+I K ++ Sbjct: 452 EKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKSKD 501 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +LE F++SLGI +VG + A+ L K + S +N + + L+ V VGDI Sbjct: 502 CTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVGDI 551 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +A++I+EF++ R + + LL ++ + S K +V TGTL+ R + Sbjct: 552 VARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVVVTGTLENYSRTSIK 611 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 E + LGA VS +S+KTD +I G+ GSK +KA+ LGV I++EE+F ++ Sbjct: 612 EKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEFENMI 662 >gi|313668860|ref|YP_004049144.1| DNA ligase [Neisseria lactamica ST-640] gi|313006322|emb|CBN87785.1| putative DNA ligase [Neisseria lactamica 020-06] Length = 827 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 249/852 (29%), Positives = 387/852 (45%), Gaps = 168/852 (19%) Query: 8 PIEALS-IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 P E LS + + + L ++ + YY P + D+EYD L R +A+ P+L Sbjct: 2 PSENLSAMNPTAQRIHELTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELK 61 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRF 117 P+ P ++GGE +V H +P LSL ++ + ++ F R+ Sbjct: 62 L---PDSPTQRVGGEPLAGFDEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVRNG 118 Query: 118 WQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177 + +EPK DG I++ Y G V AA RGDG +GEDV+ ++ + IP L Sbjct: 119 LN---GEQPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRL 175 Query: 178 SLNI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRY 235 PE+IEVRGEV + K DF ALN G+KP+ANPRNAA+G LR+L+ R Sbjct: 176 HGENTPELIEVRGEVLMLKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRK 235 Query: 236 LNFFVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFH-GIVSYYNEMKSIRS 293 L+FF + + + A+ + L + LGF + +G ++++Y +M+ R Sbjct: 236 LHFFPYSVARQQGGFVAEAHIQELAYFQELGFSLPDGNFGCFKNIGEVLAFYGQMQQKRP 295 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 LPY+IDG+V KV+ + Q++LG +R+PRW ++HKF ++A T + ID+QIGRTG +T Sbjct: 296 ELPYEIDGMVVKVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVT 355 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 PVARL+PV +GG +TNATLHN+D + +D+R+GD V+V+RAG+VIP+V Sbjct: 356 PVARLQPVFVGGVTVTNATLHNQDEVSR-----------KDVRIGDTVVVRRAGDVIPEV 404 Query: 414 VDIIVNERHPDA--------------------------------QPFSFPSFCPICQSRV 441 V +I R +P+ P+ CPIC+S + Sbjct: 405 VRVIFERRPMQETAVAVSDGIGHRQDDLFAETPSAGQTRSVPLHKPYRLPTRCPICRSEI 464 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 R+ A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + Sbjct: 465 EREEGE------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD--- 515 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYD 540 +R AD++ L + + N+ Sbjct: 516 -LVRHFADLYRLDIPTLQKMKETADKTVAESDQMPSEVSSVGASGKHKKQPVKWAENILG 574 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD------ 594 I + L RF+F+LGIRHVG A++LA+ + + + + I+A D Sbjct: 575 GIESGKTPELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPILACLPDIGTVVAH 634 Query: 595 --------------WLSLIR--------------------------VPL--VGDIIAQAI 612 L+ +P + + AQA+ Sbjct: 635 SIAHFFAQAEQQAMIDELLAAGVAPQAQAVSLPVAQYAEPQRWIARLPGFKISENKAQAL 694 Query: 613 VE---------------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----E 646 E + +N +E L + E S Sbjct: 695 WELAGQSIKGLQNDKALPADWQAWRSETQNAVLLENLKTFFAQMPSEDETAQGSDGINEA 754 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + K V TGTL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV Sbjct: 755 VAGKTFVLTGTLPTLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGV 814 Query: 707 KIMNEEQFLFLL 718 +++E + L LL Sbjct: 815 SVLSEAELLTLL 826 >gi|309378943|emb|CBX22396.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 827 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 249/852 (29%), Positives = 387/852 (45%), Gaps = 168/852 (19%) Query: 8 PIEALS-IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 P E LS + + + L ++ + YY P + D+EYD L R +A+ P+L Sbjct: 2 PSENLSAMNPTAQRIHELTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELK 61 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRF 117 P+ P ++GGE +V H +P LSL ++ + ++ F R+ Sbjct: 62 L---PDSPTQRVGGEPLAGFDEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVRNG 118 Query: 118 WQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177 + +EPK DG I++ Y G V AA RGDG +GEDV+ ++ + IP L Sbjct: 119 LN---GEQPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRL 175 Query: 178 SLNI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRY 235 PE+IEVRGEV + K DF ALN G+KP+ANPRNAA+G LR+L+ R Sbjct: 176 HGENTPELIEVRGEVLMLKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRK 235 Query: 236 LNFFVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFH-GIVSYYNEMKSIRS 293 L+FF + + + A+ + L + LGF + +G ++++Y +M+ R Sbjct: 236 LHFFPYSVARQQGGFVAEAHIQELAYFQELGFSLPDGNFGCFKNIGEVLAFYGQMQQKRP 295 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 LPY+IDG+V KV+ + Q++LG +R+PRW ++HKF ++A T + ID+QIGRTG +T Sbjct: 296 ELPYEIDGMVVKVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVT 355 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 PVARL+PV +GG +TNATLHN+D + +D+R+GD V+V+RAG+VIP+V Sbjct: 356 PVARLQPVFVGGVTVTNATLHNQDEVSR-----------KDVRIGDTVVVRRAGDVIPEV 404 Query: 414 VDIIVNERHPDA--------------------------------QPFSFPSFCPICQSRV 441 V +I R +P+ P+ CPIC+S + Sbjct: 405 VRVIFERRPMQETAVAVSDGIGHRQDDLFAETPSAGQTRSVPLHKPYRLPTRCPICRSEI 464 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 R+ A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + Sbjct: 465 EREEGE------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD--- 515 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYD 540 +R AD++ L + + N+ Sbjct: 516 -LVRHFADLYRLDIPTLQKMKETADKTVAESEQMPSEVSSVGASGKHKKQPVKWAENILG 574 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD------ 594 I + L RF+F+LGIRHVG A++LA+ + + + + I+A D Sbjct: 575 GIESGKTPELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPILACLPDIGTVVAH 634 Query: 595 --------------WLSLIR--------------------------VPL--VGDIIAQAI 612 L+ +P + + AQA+ Sbjct: 635 SIAHFFAQAEQQAMIDELLAAGVAPQAQAVSLPVAQYAEPQRWIARLPGFKISENKAQAL 694 Query: 613 VE---------------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----E 646 E + +N +E L + E S Sbjct: 695 WELAGQSIKGLQNDKALPADWQAWRSETQNAVLLENLKTFFAQMPSEDETAQGSDGINEA 754 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + K V TGTL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV Sbjct: 755 VAGKTFVLTGTLPTLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGV 814 Query: 707 KIMNEEQFLFLL 718 +++E + L LL Sbjct: 815 SVLSEAELLTLL 826 >gi|325131881|gb|EGC54581.1| DNA ligase, NAD-dependent [Neisseria meningitidis M6190] Length = 841 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 247/842 (29%), Positives = 380/842 (45%), Gaps = 167/842 (19%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + + L ++ + YY P + D+EYD L R +A+ P+L P+ P Sbjct: 26 AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQ 82 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127 ++GGE +V H +P LSL ++ + ++ F R+ D Sbjct: 83 RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGKPE 139 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186 + +EPK DG I++ Y G V AA RGDG +GEDV+ I+ + IP L PE+IE Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245 VRGEV + K DF+ALN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 200 VRGEVLMLKADFVALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259 Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303 + A+ + L + LGF + NG V + E + PY+IDG+V Sbjct: 260 QQDGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMV 319 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV+ + Q +LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV + Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428 Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451 +P+ P+ CPIC+S + R+ Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC+GG+ C AQ+ + L HF SR A +++GLG++Q++ + +R AD++ Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDLDGLGEKQIEQLVAQD----LVRHFADLY 538 Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550 L + + N+ I + L Sbjct: 539 RLDIPTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPVKWAENILAGIEASKTPEL 598 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD---------------- 594 RF+F+LGIRHVG A++LA+ + + + + ++A D Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658 Query: 595 ----WLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614 L+ +P + + AQA+ E Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEG 718 Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656 + P+N +E L + E S + K V TG Sbjct: 719 LQTDKALPTDWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838 Query: 717 LL 718 LL Sbjct: 839 LL 840 >gi|271969279|ref|YP_003343475.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021] gi|270512454|gb|ACZ90732.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021] Length = 726 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 211/745 (28%), Positives = 354/745 (47%), Gaps = 67/745 (8%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 + +P+ AL + L + + + Y+ P + D++YD R I P Sbjct: 6 EGVPVAALD------RHAELTELVEQANWRYHVLDSPTVSDAQYDTWMRELRGIEEEHPS 59 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 L P+ P K+G ++ V H SL+ +N +DL + R R ++ + Sbjct: 60 L---RTPDSPTQKVGAPISSDFTPVAHLQRMESLDNAFNADDLASWQARAERLAER---D 113 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PE 183 + E KIDG I + YEKG+ V A RGDG G+DV+A +R + +P L+ + P+ Sbjct: 114 PAPYLCELKIDGLAIALVYEKGRLVRGATRGDGRVGDDVTANVRTVAGVPHRLAGDDVPD 173 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 ++E+RGEVY+ + F+ LN++++A G+ P+ANPRN+A+G LR +P R L+ VHG Sbjct: 174 LVEIRGEVYMPVDGFVKLNEQLVAAGKAPFANPRNSAAGSLRMKDPRITAQRPLHLIVHG 233 Query: 243 LG-KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 +G + Q + +++R G PV++ + + GI ++ + R Y+IDG Sbjct: 234 VGRWEGTALPRTQSGVYERLREFGLPVSDLYKVVDDLDGINAFIEFYREHRHDPAYEIDG 293 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V KVD LQ LG +R+PRW I++K+ ++ +T+LLDI + +GRTG +TP +EP+ Sbjct: 294 VVVKVDRIELQNNLGSTSRAPRWAIAYKYPPEEVNTKLLDIQVGVGRTGRVTPYGVMEPI 353 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G+ + ATLHN + + +R+GD V++++AG+VIP++V +V+ R Sbjct: 354 VVAGSTVERATLHNGSEVAR-----------KGVRIGDTVVLRKAGDVIPEIVGPVVDLR 402 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 + F+ P+ CP C + + + + A RC AC AQ ER+ R A Sbjct: 403 DGTEREFTMPTHCPECGTALAYE-----KEGDADLRCPNTRACPAQLRERIFFAAGRRAL 457 Query: 482 NIEGLGKQQLDFFFKSEDP-AFSIRIPADIFTLQRR------------------------ 516 +IEGLG + P +R AD+F L Sbjct: 458 DIEGLGYVAATALTQPLPPQEPPVRTEADLFDLTIERLLPIRSVVRDPDTGLPKTDPETG 517 Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576 N G + + + + K ++ + R + +L IRHVG A+++A + S Sbjct: 518 DPKVVAFFANQSGEPSKNAEKMLEELEKAKDQPVWRVLVALSIRHVGPPTAQAIAAEFRS 577 Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636 A +A VG +A AI ++++ + V+ Sbjct: 578 IDAIAAASEEELAAVE----------GVGPRVAAAIRDWFEVDWHREIVDRWKAAGVRME 627 Query: 637 GRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695 + + V TGTL+ R +A + G VS+ +S+KT ++ G+N G Sbjct: 628 DEPPTDQLPQTLAGLTFVVTGTLEAFTRDEAGAALAARGGKVSSSVSKKTAFLVAGENAG 687 Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQ 720 SK +KA +LGV I++EE LL + Sbjct: 688 SKFDKAVKLGVPILDEEGLRVLLAE 712 >gi|88658391|ref|YP_507122.1| DNA ligase, NAD-dependent [Ehrlichia chaffeensis str. Arkansas] gi|123763773|sp|Q2GHG1|DNLJ_EHRCR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|88599848|gb|ABD45317.1| DNA ligase, NAD-dependent [Ehrlichia chaffeensis str. Arkansas] Length = 676 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 265/708 (37%), Positives = 410/708 (57%), Gaps = 45/708 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 E+A+ EL L ++I +HD YY P I D+EYD L R+ + I +AFP L +S D Sbjct: 3 DQEKAKLELDKLNKQIQHHDVLYYVQDNPEISDAEYDELCRKRNLILNAFPKLTQSNDYQ 62 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 IG + KV H SL+ +N +D+ KFITR +F D+ SI + E Sbjct: 63 N---NIGSSPDTKFAKVKHEEKMFSLDNAFNQQDVEKFITRTKKFLNINDNQSIPLSCEL 119 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG ++ Y+KG+ A+ RG+G+ GE+++ ++ I +P ++ P+++EVRGE+Y Sbjct: 120 KIDGLSFSVIYKKGEIYQASTRGNGYFGENITTNVKTIKNLPHIIHNA-PDLLEVRGEIY 178 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 I + DF + +ANPRNAA+G +R+L+ R L +F++ + T+ + Sbjct: 179 IDRCDF-----IQLNNDGNNFANPRNAAAGSVRQLDHNITAQRKLKYFMYTIVNTACL-- 231 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q E+L +++ GF VN + ++YN++ + RS + YDIDG++YKV++ Sbjct: 232 -TQEELLYQLKIWGFCVNEHTITTDNIEEAFNFYNQVYNNRSNINYDIDGIIYKVNDIKS 290 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q LG ++SPRW I++KF +A T+L I IQIGRTG+LTP+A L P+NIGG ++T A Sbjct: 291 QHILGTTSKSPRWAIAYKFPAAEAKTQLNKISIQIGRTGVLTPIAELSPINIGGVIVTRA 350 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHN++ I+ +DIR GD V+VKRAG+VIP++VD+ N R + F FP Sbjct: 351 SLHNKNEIER-----------KDIREGDYVIVKRAGDVIPQIVDVDKNLRTQELTKFVFP 399 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C S V + A+ CTG L C Q LE++KHFVS+DAFNI G GK+QL Sbjct: 400 TTCPSCGSSVYQAKQE------ASIYCTGELFCKDQILEKIKHFVSKDAFNIIGFGKKQL 453 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 FF++ I DIFTL+ + S K+E++ G+G+ S++NL+ +IN + ISLE Sbjct: 454 LFFYEQR----LITNITDIFTLEEKISNSDVKLESLHGWGEKSMSNLFSAINNSKVISLE 509 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 FIF+LGIR +G IA+ LA ++ SY+ + E+ + + + + + +G + Sbjct: 510 NFIFALGIRFIGKYIAKILANHFSSYETWYNEMLKLAQNEDYS----LNIQQIGSKTIGS 565 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE---NKKLVFTGTLQKIQRHKAQE 668 + F+ P N+ + L+K ++ + SS + K +VFTG L + R +A+ Sbjct: 566 LKMFFSQPHNLNMINDLVKHLTI----TDTQSSSYLSLIHGKIIVFTGELSSMSRSEAKI 621 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 GA VS+ LS+ TD +I G+NPGSK +KAQ L V+I+ E+ +L Sbjct: 622 RSETAGAKVSSSLSKNTDFLIAGNNPGSKYKKAQSLNVQILTEDLWLQ 669 >gi|110801053|ref|YP_696931.1| NAD-dependent DNA ligase LigA [Clostridium perfringens ATCC 13124] gi|123049624|sp|Q0TN59|DNLJ_CLOP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110675700|gb|ABG84687.1| DNA ligase, NAD-dependent [Clostridium perfringens ATCC 13124] Length = 662 Score = 483 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 209/711 (29%), Positives = 353/711 (49%), Gaps = 58/711 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +K + L +E++ + YY + D +YD + + P P Sbjct: 2 DKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE----TGYKLPYSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNSIFFT 129 ++G + K TH SL+K +E++R++ R +F ++ ++ + + Sbjct: 58 QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKYI 117 Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 L K DG I + Y E G V A RG G GEDV+A ++ I +IP L ++ + +E+ Sbjct: 118 LTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEIH 175 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247 GE ++ F N E P N RN A+G LR LN + R L+ F + +G Sbjct: 176 GEAIMTTEAFEKYNSEA----DTPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKE 231 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 K EML ++ GFP+++ +R+ T I + ++ IR L YDIDGLV +D Sbjct: 232 GAPFKTYMEMLNFIKTKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAID 291 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + ++ LG + P+W I++KF ++A+T+LLD++ +GR+G ++P A LEPV + G Sbjct: 292 DIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVT 351 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATL+N D I + +R+G V V+R+ +VIP+++ ++ + Sbjct: 352 VKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LEGTKE 399 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P CP C + +V + C L C Q ++ + HF R+A NI G Sbjct: 400 IEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFS 451 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ + F+ D IR +D++ L+ K+ ++ FG NL D+I K ++ Sbjct: 452 EKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKSKD 501 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +LE F++SLGI +VG + A+ L K + S +N + + L+ V VGDI Sbjct: 502 CTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVGDI 551 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +A++I+EF++ R + + LL ++ + S K +V TGTL+ R + Sbjct: 552 VARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVVVTGTLENYSRTSIK 611 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 E + LGA VS +S+KTD +I G+ GSK +KA+ LGV I++EE+F ++ Sbjct: 612 EKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEFENMI 662 >gi|158319601|ref|YP_001512108.1| NAD-dependent DNA ligase LigA [Alkaliphilus oremlandii OhILAs] gi|190359226|sp|A8MLJ8|DNLJ_ALKOO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|158139800|gb|ABW18112.1| DNA ligase, NAD-dependent [Alkaliphilus oremlandii OhILAs] Length = 661 Score = 483 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 208/708 (29%), Positives = 355/708 (50%), Gaps = 59/708 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L L ++ + YY +P++ D EYD L + + + P ++ Sbjct: 5 ERLRQLVDILNEYSYQYYVLDEPVVSDKEYDQLYDELVLLEKE----LNTVLEDSPTIRV 60 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ + H P SL+K E+L + R+ R + I + +E K DG Sbjct: 61 GGDVLKNFKAHNHLAPLWSLDKCKTPEELISWDLRVRRLLEGSGV-PIEYVMEYKFDGLT 119 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + + Y G+ V AA RG+G +GE + ++ I TIP L++ IEV+GE + + Sbjct: 120 LNLTYNNGQLVQAATRGNGTTGEGILEQVKTIKTIP--LTIPHKGRIEVQGEGLMGLSVL 177 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257 A N + +P NPRNAA+G LR L+P R L+ F + +G I E+ Sbjct: 178 AAYNKTAL----EPLKNPRNAAAGALRNLDPKVTAKRKLSAFCYNVGFYEGIDFNTHMEI 233 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ FPV+N ++ +T H ++ + +L + DGLV KV+ ++ LG Sbjct: 234 LAFLKANKFPVSNYTKKFHTIHQVIEEIETIGEQVKSLDFLTDGLVIKVNHMEARRLLGY 293 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 + PRW ++ KF ++ +T L D+ Q+GRTG LTP A LEP++IGG ++ ATL+N + Sbjct: 294 TQKFPRWAMAFKFEAEEMTTELKDVIWQVGRTGKLTPAAVLEPIDIGGVTVSRATLNNWE 353 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ + +++G RV ++R+ +VIP+++ I A P CP C Sbjct: 354 DIQR-----------KKVKIGCRVWIRRSNDVIPEIMGSIEET-LEGAMDIEKPQHCPAC 401 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S V + A C L+C Q + R+ H+ SRDA +I G ++ + F+ Sbjct: 402 HSEV--------VERGAHIFCPNSLSCKPQLVSRIVHYASRDAMDIVGFSEKTAEQLFEE 453 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 ++R AD++ ++ + FGD NL ++I +N L+ F+++L Sbjct: 454 ----LNLRDLADLYEIKYEDLIK------LPRFGDKKARNLLEAIENSKNCKLDSFVYAL 503 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI +VG + A LAK+Y S+Q + ++ LI +P VGDI+AQ+I++F++ Sbjct: 504 GIPNVGRKTATDLAKHYKSFQAIQEA----------EFQELITLPDVGDIVAQSIIDFFE 553 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + +V L+ E + + + + K +V TGTL+K R + +E + +LGA V Sbjct: 554 DEEIKKSVNRLINEGIRPLFKEVEQQENIFLGKTVVVTGTLEKYGRKEIKELLEKLGAKV 613 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQL---GVK----IMNEEQFLFLL 718 + +S+ TD ++ G+ GSKLEKA ++ GV+ I++E +F +L Sbjct: 614 TGSVSKNTDFLLAGEAAGSKLEKAMEIIASGVETSLRIISEAEFEAML 661 >gi|251799680|ref|YP_003014411.1| NAD-dependent DNA ligase LigA [Paenibacillus sp. JDR-2] gi|247547306|gb|ACT04325.1| DNA ligase, NAD-dependent [Paenibacillus sp. JDR-2] Length = 677 Score = 483 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 202/732 (27%), Positives = 331/732 (45%), Gaps = 68/732 (9%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M+ + P E L+ + L EIS H+ YY +P I D++YD L A+ Sbjct: 1 MENQTATP-EQLT------RMQELAAEISAHNYSYYTLDQPTINDADYDKLYDELVALEA 53 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ- 119 P+ P ++GGE+ H SL+K + EDL + R+ + Sbjct: 54 D----TGVVLPDSPTQRVGGELLKGFEPHRHRARLWSLDKAQDTEDLLAWNQRVLKAIND 109 Query: 120 -------KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT 172 ++ + +E K DG + + YE G+ + A+ RG+G GE + A ++ I + Sbjct: 110 YNAKHPEEEPLPQPNYVIELKFDGLTLNLTYENGQLIQASTRGNGTVGEGILAQVKTIRS 169 Query: 173 IPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD- 231 +P + IIEV+GE ++ + N +P N RNAA+G LR LNP Sbjct: 170 VPLTIP-FGDGIIEVQGEGIMNLSVLERYNQTA----AEPLKNARNAAAGALRNLNPKTT 224 Query: 232 ITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 R LN F + +G + EM Q ++ F VN N+ + + Sbjct: 225 AERKLNAFFYNVGFAEGVSFSNHREMQQFLKDNLFKVNPYALYLNSIEEVQEELLRIAEK 284 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R L + IDG V K+ + ++ LG + PRW ++ KF ++A+T L + ++GRTG Sbjct: 285 RLELDFLIDGAVVKLTDMRTREALGYTDKFPRWAVAFKFEAEEAATVLESVSWEVGRTGK 344 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVAR+E V + G + N TL+N I+ + +G V ++R+ +VIP Sbjct: 345 ITPVARVEAVELAGVTVQNCTLNNIGDIERKNLKHA---------LGTLVSIRRSNDVIP 395 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +++ + Q FP+ CP C + + + A C L C Q + R Sbjct: 396 EILGKVDE---EPGQEIVFPAVCPACGTELEQR--------GAHLFCNNKLGCRPQIIGR 444 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 + HF SRDA +IE + + D + PAD++ L + FG Sbjct: 445 ITHFSSRDAMDIEAFSVMTAEQLYADCD----VHDPADLYALGYDDLIK------LDRFG 494 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 D L D+I K ++ L F+F+LGI + G + LA +Y S Sbjct: 495 DKKARKLLDAIEKSKDRDLAAFLFALGIPNTGKATTKMLADHYGSLDGVMSAT------- 547 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIEN 649 L+ + VG I+A +IV ++ +P ++ + + + V S Sbjct: 548 ---AEELVGLQDVGAIVADSIVNYFADPIIAASIARMREHGVKAEAEQPVVVRQDSIFSG 604 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 K +V TGTL K+ R +A + + GA VS +S+KTD +I G++ GSKL KA+ LG+ ++ Sbjct: 605 KTVVLTGTLSKMSRDEAAKKLEAFGAKVSGSVSKKTDFVIAGESAGSKLTKARDLGITVI 664 Query: 710 -NEEQFLFLLQQ 720 +E++ L LL + Sbjct: 665 EDEDELLRLLGE 676 >gi|289450450|ref|YP_003474988.1| DNA ligase (NAD+) [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184997|gb|ADC91422.1| DNA ligase (NAD+) [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 758 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 229/701 (32%), Positives = 373/701 (53%), Gaps = 42/701 (5%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +E++ L E+++H++ YY PII D YDA+ RR + + A P+ + + P K+ Sbjct: 94 REITELRAELNFHNNLYYVEDSPIISDYSYDAMLRRLEELETAHPEYMTT---DSPTVKV 150 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + K+TH +P SL +++ E+L++ + R+ +E KIDG Sbjct: 151 GGRASEKFRKLTHIVPMQSLRDVFSREELQEAVERMQEQLPVGA----ELVVEEKIDGLS 206 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 +++ YE G FV + RGDG GE+++ ++ I ++P L +P + EVR E+Y++K +F Sbjct: 207 VSLEYENGVFVRGSTRGDGLVGEEITENLKQIKSLPLKLQKPLPYL-EVRAEIYLNKENF 265 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257 ALN +A G KP+ANPRNAA+G LR+L+P R L+FF + + I E Sbjct: 266 AALNKAQLAAGLKPFANPRNAAAGSLRQLDPRITRDRNLSFFAFNIQRVEGITFTTHDES 325 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L + GFPV + F I ++ + R++LPY IDG V K++ +++LG Sbjct: 326 LFYICNEGFPVVYSSFAHSDFAKIWECVEKIATRRASLPYMIDGAVIKINNLQYREKLGV 385 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A++PRW +++K+ ++ T + DI +Q+GRTG +TP+A LEPV + G+ +++ATLHN D Sbjct: 386 TAKTPRWAVAYKYPPEEQETVVKDIKLQVGRTGKITPLAVLEPVMVDGSCVSSATLHNAD 445 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YIK +DIRVGD VL+ +AG+VIP + ++++ R A+PF P CP+C Sbjct: 446 YIK-----------AKDIRVGDTVLIAKAGDVIPAIQKVVLDRRPLKAKPFVMPDKCPVC 494 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +++R + RC G L+C AQ RL H V++DA +I LG L + Sbjct: 495 GEKLIRR-----KENEVDLRC-GNLSCPAQVFRRLLHMVAKDALDIADLGPAVLARLQE- 547 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A I +DIF L + ++ N+ GF SV NL + I K + L+RFI +L Sbjct: 548 ---AGLINELSDIFRLAAYRP----EMLNLPGFQQKSVDNLLNEIEKAKVKPLDRFIVAL 600 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI +VG A+ LA + + A D +L+ V +G AQ+I++F++ Sbjct: 601 GIDYVGVVAAKKLAVAFRK--------GGLSALAAADIETLLSVETIGQTAAQSIIDFFK 652 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 P + ++A + + + K TGTL+ +R + ++ + G V Sbjct: 653 RPTTVALLQAWQELGVKPASPPLIEENGVWQGKIFAVTGTLENYKRSEVKQLIEARGGTV 712 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +S K +I G+ G KL KA++LG+ + +E F L Sbjct: 713 ANTVSSKIFAVIAGEKAGGKLAKAKELGIPVWSETDFAAKL 753 >gi|326403263|ref|YP_004283344.1| DNA ligase [Acidiphilium multivorum AIU301] gi|325050124|dbj|BAJ80462.1| DNA ligase [Acidiphilium multivorum AIU301] Length = 682 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 266/701 (37%), Positives = 401/701 (57%), Gaps = 40/701 (5%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + L+ L + ++ D YY+ PI+ D+ YDAL+R ++ A PDLA + D + Sbjct: 15 KARLAELIERLAAADAAYYRDDAPIMDDAAYDALRREAASLRAAHPDLAAALD------Q 68 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + + KV H IP LSL+ ++ D +F I RF + F EPKIDG Sbjct: 69 VGTTPSGAFGKVRHRIPMLSLDNVFEPADFVEFCASIRRFLGL-GTAPLAFVAEPKIDGL 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE +FV A RGDG GEDV+ +R + +P L + P+ IE+RGEVY++K D Sbjct: 128 SISLTYENRRFVRGATRGDGTEGEDVTENLRTLRELPATLPDDAPDFIEIRGEVYMTKTD 187 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F+ALN + +ANPRNAA+G LR+L+P +R L+ F + G +SE + ++ Sbjct: 188 FIALNQGQ----ARQFANPRNAAAGSLRQLDPAVTASRRLSLFAYARGASSEAVGETHWD 243 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L +R GFPVN + + + + R+ L YDIDG+VYK+D+ +LQ++LG Sbjct: 244 YLATLRRWGFPVNPLAERVSE-AAAEPFQRSIGERRAGLDYDIDGVVYKIDDLALQERLG 302 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 R+PRW ++ KF ++A T L IDIQ+GRTG LTP ARL+PVN+GG L+++ATLHNE Sbjct: 303 FAGRAPRWAVAWKFPAERALTTLRGIDIQVGRTGALTPRARLDPVNVGGVLVSHATLHNE 362 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I +D+R+GD V ++RAG+VIP+++ + R D+ PF FP CP Sbjct: 363 DEIAR-----------KDVRIGDTVELQRAGDVIPQILRALPERRPADSVPFVFPDHCPA 411 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + +R RCTGGL+C AQ +ERL HF SR AF+IEG+G++ + F Sbjct: 412 CGALAIRPAGE------VVRRCTGGLSCPAQVVERLIHFCSRLAFDIEGMGEKTVQEFH- 464 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + PADIFTL+ R+ I + G+G+VS L +I+ RR ISL RFI++ Sbjct: 465 ---GLGWLESPADIFTLRDREA----AIAALEGWGEVSARKLIAAIDARRRISLARFIYA 517 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR +G + A+ LA++Y SY + +++ +D L L + +G IA+ + F+ Sbjct: 518 LGIRRIGEQNAKLLARHYSSYAVWRRQMEEAGVIGSDARLELGSISGIGPSIAEELAGFF 577 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 P N ++ L+ ++ + K +VFTGTL+ + R +A+ LGA Sbjct: 578 AEPHNRDLLDRLVPILTIEDEVAAAGGALAG--KTIVFTGTLESLTRPEAKARAEALGAR 635 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KTD ++VG + GSK KA LGV +++E +F L Sbjct: 636 VTESVSKKTDFVVVGADAGSKAAKATSLGVTVLSEAEFRSL 676 >gi|83319601|ref|YP_424672.1| DNA ligase, NAD-dependent [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123740036|sp|Q2SRE1|DNLJ_MYCCT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|83283487|gb|ABC01419.1| DNA ligase, NAD-dependent [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 668 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 228/712 (32%), Positives = 385/712 (54%), Gaps = 46/712 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S EQ ++ L+++++ YY P + D+EYD + ++ + +P+ S Sbjct: 1 MSKEQILLRINQLKEQLNLWSKQYYVDDNPSVDDTEYDLALKELISLENLYPEFITS--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+GG ++ K+TH P LSL ++N ++ +F T++ + ++ + E Sbjct: 58 DSPSQKVGGTVSEKFLKITHKTPMLSLGNVFNFDEFLEFNTQVSKVSNNLNN---EYVAE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++ YE G V AA RG+G GEDV+ +R I +IP L ++ E +EVRGE+ Sbjct: 115 LKIDGLSISLVYENGVLVSAATRGNGVIGEDVTTNVRTIKSIP--LKISKKERVEVRGEI 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 Y+SK +F +N + + + NPRNAA+G LR+L+ + + + Sbjct: 173 YLSKAEFEKINQKRLLNNEDLFINPRNAAAGTLRQLDSKIVASRNLDAFLYYYISDDSPN 232 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 QYE + K+ LGF N I +Y ++ ++++ L Y IDG+V+K+++ +L Sbjct: 233 LNQYESILKLNQLGFKTNKETMLCKNLDQIKAYIDKYTNLKNDLDYQIDGIVFKINDKNL 292 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q LG ++ P+W I++KF + T+LLDI +GRTG +T A+LEPV + GA I+ A Sbjct: 293 QNSLGFTSKIPKWAIAYKFPAEIKQTKLLDIFATVGRTGKITYNAKLEPVFLMGATISAA 352 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TL+N +YIK +D+R+ V +K+AG+VIP+V++ I +E + + F Sbjct: 353 TLNNAEYIKS-----------KDLRINSIVKIKKAGDVIPEVIEAIKDETFYNLEVFQPI 401 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 +CP C S + ++ N + +CS + L L+HF SR+A NI LG + L Sbjct: 402 LYCPNCHSLLEKNENE-------VDQFCINSSCSMKILRSLQHFSSREAMNIVSLGDRSL 454 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F E I+ +DI+ L+ + +I I FG S NL DSIN +N SLE Sbjct: 455 EILFNLE----IIQNISDIYKLEEYKD----QILAIENFGLKSYLNLIDSINMSKNNSLE 506 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + +F LGIRH+G++ A+ LA+ Y + N + + LI++ +G+ +A + Sbjct: 507 KVLFGLGIRHIGSKTAKILARKYQNIDNLMKA----------SYDELIQINSIGESLALS 556 Query: 612 IVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I+++++ N+ + L ++ + + N S I NK V TGTL + R + + + Sbjct: 557 IIDWFKIEDNLKLINELKSFNINFNYLGAKINSDSIIANKTFVITGTLTR-PREEFKTLI 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 +S +S++TD ++ G+N GSKLEKA++LGV I++E+QF LL+ Sbjct: 616 ENNAGKISGSISKQTDYLLAGNNVGSKLEKAKKLGVIIIDEQQFFDLLKSEK 667 >gi|168213168|ref|ZP_02638793.1| DNA ligase, NAD-dependent [Clostridium perfringens CPE str. F4969] gi|170715278|gb|EDT27460.1| DNA ligase, NAD-dependent [Clostridium perfringens CPE str. F4969] Length = 662 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 209/711 (29%), Positives = 353/711 (49%), Gaps = 58/711 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +K + L +E++ + YY + D +YD + + P P Sbjct: 2 DKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE----TGYKLPYSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNSIFFT 129 ++G + K TH SL+K +E++R++ R +F ++ ++ + + Sbjct: 58 QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNIKFLEEYNRTSDEELPPLKYI 117 Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 L K DG I + Y E G V A RG G GEDV+A ++ I +IP L ++ + +E+ Sbjct: 118 LTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEIH 175 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247 GE ++ F N E P N RN A+G LR LN + R L+ F + +G Sbjct: 176 GEAIMTTEAFEKYNSEA----ETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKE 231 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 K EML ++ GFP+++ +R+ T I + ++ IR L YDIDGLV +D Sbjct: 232 GAPFKTYMEMLNFIKTKGFPMDDYIRECKTLDEIQKEIDYIRDIRFDLNYDIDGLVIAID 291 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + ++ LG + P+W I++KF ++A+T+LLD++ +GR+G ++P A LEPV + G Sbjct: 292 DIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVT 351 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATL+N D I + +R+G V V+R+ +VIP+++ ++ + Sbjct: 352 VKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LEGTKE 399 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P CP C + +V + C L C Q ++ + HF R+A NI G Sbjct: 400 IEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFS 451 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ + F+ D IR +D++ L+ K+ ++ FG NL D+I K ++ Sbjct: 452 EKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKSKD 501 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +LE F++SLGI +VG + A+ L K + S +N + + L+ V VGDI Sbjct: 502 CTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVGDI 551 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +A++I+EF++ R + + LL ++ + S K +V TGTL+ R + Sbjct: 552 VARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVVVTGTLENYSRTSIK 611 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 E + LGA VS +S+KTD +I G+ GSK +KA+ LGV I++EE+F ++ Sbjct: 612 EKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEFENMI 662 >gi|59800688|ref|YP_207400.1| putative DNA ligase [Neisseria gonorrhoeae FA 1090] gi|75356380|sp|Q5F9Z9|DNLJ_NEIG1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|59717583|gb|AAW88988.1| putative DNA ligase [Neisseria gonorrhoeae FA 1090] Length = 823 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 251/841 (29%), Positives = 381/841 (45%), Gaps = 163/841 (19%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L ++ + YY P I D+EYD L R +A+ P+L P+ P + Sbjct: 5 AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PDSPTQR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128 +GGE +V H +P LSL ++ + ++ F R+ D + + Sbjct: 62 VGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPEY 118 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187 +EPK DG I++ Y G V AA RGDG +GEDV+ ++ + IP L PE+IEV Sbjct: 119 VIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVSNIPLRLHGENVPELIEV 178 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246 RGEV + K DF ALN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 179 RGEVLMLKADFAALNQRQTENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVARQ 238 Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVY 304 + A+ + L + LGF + NG G V + E + PY+IDG V Sbjct: 239 QGGLIAEEHIQELAYFQALGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVV 298 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + Q +LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +G Sbjct: 299 KVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407 Query: 425 A--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGKL 452 +P+ P+ CPIC+S + R+ Sbjct: 408 ETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE----- 462 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA-DIF 511 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + + DI Sbjct: 463 -AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVRHFADLYRIDIP 521 Query: 512 TLQRRQQT--------------------STTKIENILGFGDVSVTNLYDSINKRRNISLE 551 TLQ+ ++T S +N N+ I + L Sbjct: 522 TLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPELA 581 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD----------------- 594 RF+F+LGIRHVG A++LA+ + + + + ++A D Sbjct: 582 RFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQ 641 Query: 595 ---WLSLIR--------------------------VPL--VGDIIAQAIVE--------- 614 L+ +P + + AQA+ E Sbjct: 642 QAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSIEGL 701 Query: 615 ------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGT 657 + +N +E L + E S + K V TGT Sbjct: 702 QNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGT 761 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L +R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L L Sbjct: 762 LPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGETAGSKLEKANALGVSVLSEAELLTL 821 Query: 718 L 718 L Sbjct: 822 L 822 >gi|288919113|ref|ZP_06413452.1| DNA ligase, NAD-dependent [Frankia sp. EUN1f] gi|288349457|gb|EFC83695.1| DNA ligase, NAD-dependent [Frankia sp. EUN1f] Length = 715 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 223/716 (31%), Positives = 346/716 (48%), Gaps = 48/716 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 R + L +++ H YY P I D+EYDAL R D I +P+L + P Sbjct: 36 AAVRARAAELARDLEEHAHRYYVLDAPTIADAEYDALLRELDQIEQQYPEL---RTADSP 92 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 K+ G + VTH LSL+ +++ + + R R + + E KI Sbjct: 93 TQKVAGSYSTLFTPVTHLERLLSLDNVFDEDGFHAWAARAAR-----EQPVEAWLCELKI 147 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193 DG + + YE G V AA RGDG +GED++ +R + ++P L +PE++EVRGEVY Sbjct: 148 DGLAVDLVYEAGALVSAATRGDGRTGEDITLNVRTLRSVPARLRGPGVPELLEVRGEVYF 207 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 F LN ++ G+ P+ANPRNAA+G LR+ +P R L VHGLG + Sbjct: 208 PTAGFAELNASLVEAGKAPFANPRNAAAGSLRQKDPRVTAGRPLAMIVHGLGANRGFEVE 267 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q +++ LG PV+ + ++++ R + ++IDG+V KVD F+ Q Sbjct: 268 SQSAAYERLAELGLPVSTRYQVCAGVDEVLAFVRAWGEQRHDVEHEIDGVVIKVDGFAQQ 327 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG +++PRW ++ K+ ++ +TRL DI + +GRTG +TP LEPV + G+ + AT Sbjct: 328 RRLGATSKAPRWAVAFKYPPEEVTTRLRDIQVNVGRTGRVTPFGVLEPVKVAGSTVGMAT 387 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D + G + + +GD V++++AG+VIP++V +V+ R + F P+ Sbjct: 388 LHNIDEV-----------GRKGVLIGDVVVLRKAGDVIPEIVSPVVDLRDGSERAFVMPT 436 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + +VR RC ++C AQ E + H SR A +I+GLG + Sbjct: 437 HCPECGTELVRPEGE------VDIRCPNTVSCPAQLRESVFHLASRGALDIDGLGYETAT 490 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 IR DIF L E + GF V + I R+ L R Sbjct: 491 VLLAE----GRIRDIGDIFHLAPE------SFEGLRGFASKKVDQILRGIEAARDRPLWR 540 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 + L IRHVG AR+LA+ S A +A V VG IA+A+ Sbjct: 541 LLVGLSIRHVGPTAARALARELRSLDAIAAAPAERLAA----------VDGVGPKIAEAV 590 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 V+++ +PR+ V + + ++ +V TGTLQ R A E V Sbjct: 591 VDWFADPRHRDVVARIAAGGARLADEGAGEGPGLLDGVVVVITGTLQGWSRDTATEAVQA 650 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRI 727 G V+ +S+KT ++ G +PG SK +KA L + +++E F LL R+ Sbjct: 651 RGGKVTGSVSKKTTFVVAGVDPGASKYQKALSLRIPLLDETGFAALLGDGADAARV 706 >gi|110803876|ref|YP_699521.1| NAD-dependent DNA ligase LigA [Clostridium perfringens SM101] gi|122956526|sp|Q0SQT6|DNLJ_CLOPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110684377|gb|ABG87747.1| DNA ligase, NAD-dependent [Clostridium perfringens SM101] Length = 662 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 207/711 (29%), Positives = 353/711 (49%), Gaps = 58/711 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +K + L +E++ + YY + D +YD + + P P Sbjct: 2 DKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE----TGYKLPYSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNSIFFT 129 ++G + K TH SL+K +E++R++ R +F ++ ++ + + Sbjct: 58 QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKYI 117 Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 L K DG I + Y E G + A RG G GEDV+A ++ I +IP L ++ + +E+ Sbjct: 118 LTKKFDGLTINLSYDENGVLITGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEIH 175 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247 GE ++ F N E P N RN A+G LR LN + R L+ F + +G Sbjct: 176 GEAIMTTEAFEKYNSEA----DTPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKE 231 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 K EML ++ GFP+++ +R+ T I + ++ IR L YDIDGLV +D Sbjct: 232 GAPFKTYMEMLNFIKTKGFPMDDYIRECKTLDEIQKEIDYIRDIRFDLNYDIDGLVIAID 291 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + ++ LG + P+W I++KF ++A+T+LLD++ +GR+G ++P A LEPV + G Sbjct: 292 DIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVT 351 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATL+N D I + +R+G V V+R+ +VIP+++ ++ + Sbjct: 352 VKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LEGTKE 399 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P CP C + +V + C L C Q ++ + HF R+A NI G Sbjct: 400 IEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFS 451 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ + F+ D IR +D++ L+ K+ ++ FG NL D+I K ++ Sbjct: 452 ERTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKSKD 501 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +LE F++SLGI +VG + A+ L K + S +N + + L+ V VGDI Sbjct: 502 CTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVGDI 551 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +A++I+EF++ R + + LL ++ + S K +V TGTL+ R + Sbjct: 552 VARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVVVTGTLENYSRTSIK 611 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 E + LGA VS +S+KTD +I G+ GSK +KA+ LG+ I++EE+F ++ Sbjct: 612 EKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGITILSEEEFENMI 662 >gi|168205087|ref|ZP_02631092.1| DNA ligase, NAD-dependent [Clostridium perfringens E str. JGS1987] gi|170663244|gb|EDT15927.1| DNA ligase, NAD-dependent [Clostridium perfringens E str. JGS1987] Length = 662 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 209/711 (29%), Positives = 353/711 (49%), Gaps = 58/711 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +K + L +E++ + YY + D +YD + + P P Sbjct: 2 DKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE----TGYKLPYSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNSIFFT 129 ++G + K TH SL+K +E++R++ R +F ++ ++ + + Sbjct: 58 QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKYI 117 Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 L K DG I + Y E G V A RG G GEDV+A ++ I +IP L ++ + +E+ Sbjct: 118 LTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEIH 175 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247 GE ++ F N E P N RN A+G LR LN + R L+ F + +G Sbjct: 176 GEAIMTTEAFEKYNSEA----ETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKE 231 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 K EML ++ GFP+++ +R+ T I + ++ IR L YDIDGLV +D Sbjct: 232 GAPFKTYMEMLNFIKVKGFPMDDYIRECKTLDEIQKEIDYIRDIRFDLNYDIDGLVIAID 291 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + ++ LG + P+W I++KF ++A+T+LLD++ +GR+G ++P A LEPV + G Sbjct: 292 DIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVT 351 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATL+N D I + +R+G V V+R+ +VIP+++ ++ + Sbjct: 352 VKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LEGTKE 399 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P CP C + +V + C L C Q ++ + HF R+A NI G Sbjct: 400 IEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFS 451 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ + F+ D IR +D++ L+ K+ ++ FG NL D+I K ++ Sbjct: 452 EKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKSKD 501 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +LE F++SLGI +VG + A+ L K + S +N + + L+ V VGDI Sbjct: 502 CTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVGDI 551 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +A++I+EF++ R + + LL ++ + S K +V TGTL+ R + Sbjct: 552 VARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVVVTGTLENYSRTSIK 611 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 E + LGA VS +S+KTD +I G+ GSK +KA+ LGV I++EE+F ++ Sbjct: 612 EKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEFENMI 662 >gi|317485271|ref|ZP_07944151.1| DNA ligase [Bilophila wadsworthia 3_1_6] gi|316923397|gb|EFV44603.1| DNA ligase [Bilophila wadsworthia 3_1_6] Length = 698 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 247/732 (33%), Positives = 391/732 (53%), Gaps = 54/732 (7%) Query: 9 IEALSIEQA-RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 +++L +E A +K L L + YH+ Y+ P I D EY+A + + P+ Sbjct: 6 LQSLLVEDADKKRLEELRAFVIYHNHRYHTLDAPEITDDEYNAAFQELLRLEERHPEW-- 63 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P N+IGG++ SL H+ SL+ +++ E+ + F+ R+ + + Sbjct: 64 -RSPDSPTNRIGGQVLSSLETKAHTRRMYSLDNVFDAEEWQGFLKRLDNAQEGLEH---A 119 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 F +PK+DG + + YE G+FV A RGDG GE V+ ++ + +P+VL + PE +EV Sbjct: 120 FWCDPKMDGLALELVYENGRFVEALTRGDGEVGELVTEAMQTVRNLPKVLHGDAPERLEV 179 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEV + DF LN+ + K +ANPRNAA+G +R+L+ + +R L F +G G Sbjct: 180 RGEVIFRRRDFALLNERLRKENLKTFANPRNAAAGSIRQLDTSVTASRPLRFLAYGFGDV 239 Query: 247 SE---IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 E++ ++R GF G R + +YY + R +L Y+IDG+V Sbjct: 240 RFGGVQPWSTYEEVMGRLRDFGFETPPGGRLCRGSEEVEAYYASLSEKRESLAYEIDGVV 299 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 K+++ Q+ LG AR+PR+ ++ KF +QA+T LLDI +Q+GRTG+LTPVA LEPVN+ Sbjct: 300 MKLNDLEAQEALGYTARAPRFAVAWKFPAQQATTLLLDITVQVGRTGVLTPVAELEPVNV 359 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG L++ ATLHNED I+ RD+R+GDRV+V+RAG+VIP+VV +++ER P Sbjct: 360 GGVLVSRATLHNEDEIR-----------NRDVRIGDRVVVQRAGDVIPEVVRAVLSERAP 408 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 D+QPF FP CP C R A RC +C A + L HFVS+ +I Sbjct: 409 DSQPFVFPHVCPSCGQAASRLEGE------VAWRCVNV-SCPAMIRQSLAHFVSKAGLDI 461 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGLG++ ++ + ++ PAD+FTL+ + G T DS++ Sbjct: 462 EGLGQRWIELLV----ASGRVKTPADLFTLRVDELLHY------ERMGVKLATKFVDSLD 511 Query: 544 KRRNISL-ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + + + +R + +LGIRHVG + A++LA Y L +P Sbjct: 512 RAKKEATLQRLLCALGIRHVGEQTAKTLAATYADMDVLRAA----------SPEELQNLP 561 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVFTGTLQ 659 +G +A +I F+ + N+ + L + + + S + +K++FTG+L Sbjct: 562 DIGPEVASSIKAFFDDEPNVALLARLRELGLWPVRQEAAVASMPVGPLAGQKILFTGSLS 621 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 I R KAQ+ GA ++ +SR+ ++++VGD PGSK EKAQ LG++I++E FL LLQ Sbjct: 622 -IPRSKAQQMAENAGAEIAGSVSRRLNLLVVGDEPGSKREKAQALGIRIVDEAGFLALLQ 680 Query: 720 QYNTTLRIHDDD 731 N ++ Sbjct: 681 ADNEVTASSSEN 692 >gi|218767787|ref|YP_002342299.1| putative DNA ligase [Neisseria meningitidis Z2491] gi|166216217|sp|A1IQR7|DNLJ_NEIMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|121051795|emb|CAM08101.1| putative DNA ligase [Neisseria meningitidis Z2491] gi|319410038|emb|CBY90372.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Neisseria meningitidis WUE 2594] Length = 841 Score = 482 bits (1240), Expect = e-133, Method: Composition-based stats. Identities = 249/838 (29%), Positives = 379/838 (45%), Gaps = 159/838 (18%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + + L ++ + YY P + D+EYD L R +A+ P+L P+ P Sbjct: 26 AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQ 82 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127 ++GGE +V H +P LSL ++ + ++ F R+ D Sbjct: 83 RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGKPE 139 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186 + +EPK DG I++ Y G V AA RGDG +GEDV+ ++ + IP L PE+IE Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIE 199 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245 VRGEV + K DF ALN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 200 VRGEVLMLKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259 Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303 A+ + L + LGF + NG V + E + PY+IDG+V Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLTFYEQMQQKRPELPYEIDGMV 319 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV+ + Q++LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV + Sbjct: 320 VKVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428 Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451 +P+ P+ CPIC+S + R+ Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA-DI 510 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + + DI Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVLHFADLYRLDI 542 Query: 511 FTLQRRQQTSTTKIENILGFGD----------------VSVTNLYDSINKRRNISLERFI 554 TLQ+ ++T+ + N+ I + L RF+ Sbjct: 543 PTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPVKWAENILAGIESGKTPELARFL 602 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQ--------------------EINNIIAHNNDD 594 F+LGIRHVG A++LA+ + + + + A Sbjct: 603 FALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM 662 Query: 595 WLSLIR--------------------------VPL--VGDIIAQAIVE------------ 614 L+ +P + + AQA+ E Sbjct: 663 IDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEGLQND 722 Query: 615 ---------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGTLQK 660 + P+N +E L + E S + K V TGTL Sbjct: 723 KALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPT 782 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV I++E + L LL Sbjct: 783 LKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSILSEAELLTLL 840 >gi|71082725|ref|YP_265444.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1062] gi|123775550|sp|Q4FPL3|DNLJ_PELUB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|71061838|gb|AAZ20841.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1062] Length = 676 Score = 482 bits (1240), Expect = e-133, Method: Composition-based stats. Identities = 255/715 (35%), Positives = 397/715 (55%), Gaps = 43/715 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + E H+ YY +KPI+ D E+D LK+ + + L Sbjct: 1 MNDKDLEIEYLKKIDLFQRHNKHYYDKNKPIVSDQEFDLLKKDIIDLERKYKFLK---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P IG + + + K+ H +P LSL +N EDL+ F +I F KD N+I ++ E Sbjct: 58 YSPTKSIGFKPSKNFQKIKHKVPMLSLGNAFNEEDLKNFEKKIINFLSLKDVNTIEYSAE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PKIDG ++ Y GK RGDG+ GED++ ++ I IP + N P+ I++RGE Sbjct: 118 PKIDGISASLIYIDGKLTKGLSRGDGNEGEDITQNLKTIKDIPLEITKSNFPKEIDIRGE 177 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249 V+I NDF + + +ANPRNAASG LR+ N L F + G ++ Sbjct: 178 VFIENNDFKKI--------KDKFANPRNAASGSLRQKNSLITAKIPLKFIAYTYGYEKKM 229 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 K Q L+ ++ GF N ++ ++ + E++ R L +DIDG+VYKV++F Sbjct: 230 NIKNQTSFLENLKLWGFKTNPFNKKIIGVKNLMLNHKELEEKRKELAFDIDGIVYKVNDF 289 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQK+LG A +PRW I+HKF+ + + +++I+IQIGRTG LTPVA+++PVNIGG +++ Sbjct: 290 DLQKRLGFAANAPRWAIAHKFSANSSISEIMNIEIQIGRTGALTPVAKIKPVNIGGVIVS 349 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNED I +DIRVGD V V+RAG+VIP VV + + +R +++ F Sbjct: 350 NATLHNEDEI-----------VRKDIRVGDTVTVERAGDVIPHVVSVDLKKRKQNSKKFI 398 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP C S+ ++D N T + A RC + G C +ER+KHFVS+DAFNI+G GK Sbjct: 399 FPLKCPSCGSKTIKDYNETTKRQDAVRRCASEGFECEKIAIERIKHFVSKDAFNIDGFGK 458 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ F+ + +R+P DIF L + KIE + G+G +SV NL SI +++NI Sbjct: 459 KIVENFWNLK----LVRLPQDIFKL------NYNKIEELEGWGKLSVANLRFSIEEKKNI 508 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SLERFI+SLGIRH+G E A+ +A++ + NF + + SL + +G Sbjct: 509 SLERFIYSLGIRHIGQENAKLIARHLKTASNFFRLS------GEKNIESLSNIDGIGITQ 562 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 Q+I +F+ N N+ + L K + N + ++NK + TG L I R +A+ Sbjct: 563 IQSIKKFFLNKTNLKVLSELEKNLLIKDVILINN-NGLLKNKTFMLTGKLNGISRAEAKS 621 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + Q + + +++K D +I GD P K+ A++ +KI+N+ ++L +L + Sbjct: 622 LIEQNSGKIISNVNKKLDYLIAGDKPTLKKINTAKEWNIKIINQTEWLKMLNKSG 676 >gi|284929444|ref|YP_003421966.1| DNA ligase, NAD-dependent [cyanobacterium UCYN-A] gi|284809888|gb|ADB95585.1| DNA ligase, NAD-dependent [cyanobacterium UCYN-A] Length = 682 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 209/721 (28%), Positives = 350/721 (48%), Gaps = 47/721 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ +K + L + + + Y+ ++ I+ DS YD L R+ + P+L Sbjct: 1 MNNLNIQKTIIKLRKHLQQANYAYHVLNESIMEDSVYDQLYRQLYNLEQRNPNLI---SS 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++G + L V H IP SLE +N+++L + R ++ + +++ I + E Sbjct: 58 DSVTQRVGEKPALHFNSVKHDIPLYSLENAFNLQELEAWENRNQKYLKSQENQLIKYIAE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGE 190 KIDG+ +++ YE G RGDG GED++ IR I +IP L+ + P I+ V GE Sbjct: 118 LKIDGSALSLTYENGLLTRGLTRGDGIVGEDITQNIRTIFSIPLHLNLDDPPSIMHVNGE 177 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 ++ ++F +N + G+ +ANPRNAA+G LR+L+ ++ F + Sbjct: 178 AFLPLDEFKRINKQKQKEGKSLFANPRNAAAGTLRQLDSKIVSERKLQFFAYSLYADNLD 237 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K Q++ L+ ++ GF VN R + + +Y+NE KS + LPY DG+V K++ Sbjct: 238 IKSQWDTLKFLQECGFLVNPYYRLCKSLDTVTNYFNEWKSAKKHLPYMTDGVVIKINSHI 297 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQK+L R PRW I+ K+ ++ ST + DI GRTG +TP+A + PV +GG ++ Sbjct: 298 LQKELAYTQRFPRWAIALKYPAEEISTVVEDIIFNTGRTGAVTPMAVMNPVLLGGTIVRK 357 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L I +GD V +++AGE+IP+V+ ++ RH + F Sbjct: 358 ATLHNIDRIAQL-----------GICIGDTVTIRKAGEIIPEVIRVLKTLRHHKTKVFQI 406 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 CP C S +V N A RC +C A L H+ SRDA +I GLG++ Sbjct: 407 SERCPKCNSMLVSFSNE------AVVRCIN-NSCPAILKGNLIHWSSRDAVDISGLGEKI 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + + +D++ L + ++ N+ G S NL SI + S Sbjct: 460 IDLLISN----GLVNSISDLYHL------NFQEVSNLERMGIKSAENLIKSIESSKTKSW 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + ++ LGI HVG A L + + S Q Q + +L+ + +G +A Sbjct: 510 TKVLYGLGIHHVGYTTAILLTENFSSVQQLLQAP----------YDTLVTIKGIGKEVAY 559 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 +I ++ N + L K + K N V TG+L ++R + Sbjct: 560 SIRSWFSLEENQKLISELDKNGFVLENKNLGINQNKPDKQIFFNITFVITGSLNTLKRSE 619 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 + + G V +++KT+ I+VG+NPGSKL + +L + +NE FL +L+ N + Sbjct: 620 IKNLIENFGGKVVNSVTKKTNYILVGENPGSKLAEGMKLNIIRLNETDFLRILKDANIEI 679 Query: 726 R 726 Sbjct: 680 N 680 >gi|296128966|ref|YP_003636216.1| DNA ligase, NAD-dependent [Cellulomonas flavigena DSM 20109] gi|296020781|gb|ADG74017.1| DNA ligase, NAD-dependent [Cellulomonas flavigena DSM 20109] Length = 824 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 221/821 (26%), Positives = 351/821 (42%), Gaps = 125/821 (15%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + R ++L ++I YY P D+ YD R + + P L P+ Sbjct: 14 PAEVRHRWTALAEQIRADQFAYYVRDAPSSSDAAYDERMRELERLEDEHPGL---RTPDS 70 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + V H LSL+ ++ EDL + R+ R + + + E K Sbjct: 71 PTQQVGGTFSTEFTAVDHVERMLSLDNAFSREDLVAWAERVQRDLESTV--PVEYLCELK 128 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVRGE 190 IDG I + YEKG+ V AA RGDG +GEDV+ +R I TIP VL + P++IE+RGE Sbjct: 129 IDGLAIALLYEKGRLVRAATRGDGRTGEDVTLNVRTISTIPDVLGGDPATHPDVIEIRGE 188 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V++ + F ALN+ +A GR P+ANPRNAA+G LR+ +P R L + HG+G + Sbjct: 189 VFLPVDAFRALNEAQVAAGRAPFANPRNAAAGSLRQKDPRVTAARPLRMYAHGIGALTWG 248 Query: 250 F-----AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 Q ++ + G P + R + + R + ++IDG+V Sbjct: 249 DGRGTGIDRQSQVYDLLAGWGVPTSTHTRVVGSLDEVWDRVAHFGEHRHDVEHEIDGVVV 308 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD+ +LQ++LG +R+PRW I++K+ ++ +TRLL I++ IGRTG TP A +EPV + Sbjct: 309 KVDDIALQRRLGATSRAPRWAIAYKYPPEEVNTRLLAIELGIGRTGRATPFAVMEPVLVA 368 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G+ + ATLHN+D +K D V++++AG+VIP++V D Sbjct: 369 GSTVRQATLHNQDVVKVKGVRVG-----------DMVVLRKAGDVIPEIVGPAPQAPDDD 417 Query: 425 AQPFSFPS--FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 + CP C + + + RC C AQ RL+H SR AF+ Sbjct: 418 VPRVEWHMPADCPECGTPLRPMR-----EGDVDLRCPNAQGCPAQVRGRLEHIGSRGAFD 472 Query: 483 IEGLGKQQLDFFFKSEDPAF-----------SIRIPADIFT------------------- 512 IE LG+ + E P + PAD Sbjct: 473 IEVLGEVTAAALTQPEVPEVPPVPNEAYLFDLVGYPADAPPEEVERVRSASLARLAEVEV 532 Query: 513 --------LQRRQQTSTTKIENILGFGDVSV-----------------------TNLYDS 541 L + T + L D Sbjct: 533 VVRDAETGLPKEDADGTVRRRTPFRRTLKHTRAQRAAAEAAGRTLPDWEPSEAARTLLDQ 592 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR- 600 ++ + L R I +L IRHVG AR+LA+ + S ++ D + Sbjct: 593 LDLAKTKELWRAIVALSIRHVGPTAARALAQEFGSMAALRAVVDPTARGAVDAPQEAVDG 652 Query: 601 -------------------------------VPLVGDIIAQAIVEFYQNPRNICAVEALL 629 V VG IA+++++++ P + V+ Sbjct: 653 GAVADDAVEGSIADEDGAPAADAAAVARLAGVEGVGPTIARSLLDWFAEPWHREIVDRWA 712 Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 +++ +E +V TG+L++ R A+E + G S +SRKTD ++ Sbjct: 713 AAGVVMQDAVDESTPRTLEGVTVVVTGSLERFSRDGAKEAILGRGGKASGSVSRKTDFVV 772 Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDD 730 VG+N GSK KA++LG++I++E F LL + D+ Sbjct: 773 VGENAGSKETKARELGLRILDEAGFEALLAHGPGAVVPPDE 813 >gi|55379625|ref|YP_137475.1| NAD-dependent DNA ligase LigA [Haloarcula marismortui ATCC 43049] gi|74516349|sp|Q5UY84|DNLJ_HALMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|55232350|gb|AAV47769.1| DNA ligase [Haloarcula marismortui ATCC 43049] Length = 691 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 234/718 (32%), Positives = 360/718 (50%), Gaps = 49/718 (6%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 +E + E AR++ L + + YHD YY + P+I D YDAL R + AF Sbjct: 20 FESVEDVDAETAREQADQLREALRYHDYRYYVENDPVIGDRAYDALFSRLQRLESAF--- 76 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 + P ++GGE L V H S+++ D+R+F +R+ D Sbjct: 77 -NLDTDGSPTQRVGGEPLDELPDVEHVARMGSIDQGGEEADVREFDSRVRNGL----DGD 131 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + + EPK DG + I YE G + AA RGDG GEDV+ +R I ++P+ L + P+ + Sbjct: 132 VQYFCEPKFDGLSVEIVYEDGVYQRAATRGDGEVGEDVTENVRTISSVPQRLRGDYPDFL 191 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245 VRGEVYI ++ F N E + G P+ANPRNAA+G LR+L+P+ Sbjct: 192 AVRGEVYIPRDAFTTFNRERVERGEDPFANPRNAAAGTLRQLDPSVTAERPLSIFFFGVL 251 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + + + E+ ++ G V + + + Y NE + R L Y+IDG+V K Sbjct: 252 DASVDFESHSELHERFPEWGLRVCDRTAVVDDIDAAIDYRNEQQQARDDLDYEIDGVVIK 311 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ LG AR+PRW ++KF ++ T + DI +Q+GRTG LTPVA ++PV +GG Sbjct: 312 VDDMDACDDLGSTARAPRWAFAYKFPARKEETTVRDIVVQVGRTGRLTPVALMDPVEVGG 371 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ A+LHN I L + VGDRV +KRAG+VIP VV+++ ++ Sbjct: 372 VTVSRASLHNPSLIADL-----------GVDVGDRVRIKRAGDVIPDVVEVLDDDGDGH- 419 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 F FP CP C S V D CTGGL C AQ+ ++H+ SRDA +IEG Sbjct: 420 --FEFPETCPACDSPVEHD--------GPMAFCTGGLTCPAQRERSVEHYASRDALDIEG 469 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 +G++ + A + PAD++ L T + G+G+ S NL D ++ Sbjct: 470 VGEKAVQQLLD----AGLVSDPADLYDLTVEDLTG------LEGWGETSARNLVDGMDSA 519 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R L F+ +LGI VG AR+LA+ + +++ + D + VP VG Sbjct: 520 REPPLADFLVALGIPEVGTVTARNLAQEFGTFEAILDA------ADEGDTDAFEAVPDVG 573 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +A++IVEF++ N ++ LL V P E+ ++ + VFTG+L R + Sbjct: 574 QTVARSIVEFFEGEGNRAVIDRLLDHVEPQAA--EETDGDALDGQTFVFTGSLDGYTRGE 631 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722 AQE V + ++ +S TD +++GDNPG K + A V+ + E++F LL Sbjct: 632 AQELVERNDGSATSSVSGNTDYLVLGDNPGQRKQDDAAAHDVETLTEDEFEELLDDAG 689 >gi|319956399|ref|YP_004167662.1| DNA ligase, nad-dependent [Nitratifractor salsuginis DSM 16511] gi|319418803|gb|ADV45913.1| DNA ligase, NAD-dependent [Nitratifractor salsuginis DSM 16511] Length = 657 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 221/704 (31%), Positives = 362/704 (51%), Gaps = 57/704 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +E ++ YY P + D YD L R +A A PD DP P ++ Sbjct: 6 QEYEEAVAKLKRWAYAYYVEDNPEVTDEVYDRLYREVEAYEKAHPDEI---DPTSPTQRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + K H S+E ++N + ++ RI + + + + +EPK DG Sbjct: 63 GAPLKEGFKKAKHLSRMWSMEDVFNAAEFEEWFNRIDKKYPGE-----RYYIEPKFDGAS 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + + YE G A RGDG GEDV+A + I +IP L + +IE+RGEV ++ +F Sbjct: 118 LNLIYENGLLKQAITRGDGVEGEDVTANAKTIRSIP--LDIAHKSLIEIRGEVLMTIEEF 175 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257 +N E IA G +P+ANPRNAA+G LR+L+P+ R L F G+G +++ + ++ Sbjct: 176 ERINKERIAAGEQPFANPRNAAAGSLRQLDPSITAKRNLIFQPWGVG-VNDLDYEYLSDL 234 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 + + LGF T I + Y ++ +RS LP +DG+V KVD +LQ+ LG Sbjct: 235 MGYVYDLGFRKPPLREVKRTPKEIEAVYEKLDKMRSQLPVMLDGMVVKVDRIALQEILGY 294 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 + PRWM+++KF + TRLLD+ Q+GRTG++TPVA LEPV I G ++ ATLHN D Sbjct: 295 TVKYPRWMVAYKFPAVEKQTRLLDVIPQVGRTGVITPVAVLEPVEIEGVVVERATLHNYD 354 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI+ L DIR+GD V V R+G+VIPK++ ++ R +P P+ CP+C Sbjct: 355 YIEKL-----------DIRIGDMVTVIRSGDVIPKIIKVLPQYRTGKEKPIQRPTRCPVC 403 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S V+ + L+C A+ + + +F S+ NI+GLG++ + + Sbjct: 404 GSEVLDEGPLVK---------CQNLSCPARVVNSIIYFASKQCMNIDGLGEKIVQQLYD- 453 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A ++ D++ L++ + GFG+ L ++I + RF+ +L Sbjct: 454 ---AGLVKDVEDLYHLKKEDL------LKLEGFGEKKAEKLLEAIEASKGRECWRFVNAL 504 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI H+G ++ + + + + + D +L+ + G+ +A + +EF + Sbjct: 505 GIEHIGEVASKKICEKFG------------LDFIHADKEALLSIEGFGEEMANSFLEFMR 552 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 N V+ L++ V P + E+ V S K +V TG ++K R + +E + LGA V Sbjct: 553 V--NGEKVKRLMEIVRPKPPQKEEVVESPFTGKTVVLTGAMKK-PRSEIKEMLEHLGAHV 609 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 + +S KTD +I G++PGSK +KA+QLGV ++ EE+ +L + Sbjct: 610 TNTVSHKTDYVIYGEDPGSKFDKAKQLGVTLLPEEKMWEMLGEQ 653 >gi|115314545|ref|YP_763268.1| DNA ligase [Francisella tularensis subsp. holarctica OSU18] gi|122325430|sp|Q0BMQ3|DNLJ_FRATO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|115129444|gb|ABI82631.1| DNA ligase (NAD(+)) [Francisella tularensis subsp. holarctica OSU18] Length = 678 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 256/713 (35%), Positives = 391/713 (54%), Gaps = 54/713 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ + + + L +S Y+ KPII DS+YD L R + + P Sbjct: 14 LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N L+++GGE+ + H SL ++++E+LR F +I I E Sbjct: 71 NSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDIELECE 122 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG I+I Y+ GKF YA RGDG GE VS ++ I +P + N PE +EVRGE Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT--S 247 + + K FL+LN+ M K +ANPRNAA+G +R L+ R L + +G+G Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 ++ + Q+E++Q ++ GF +++ + A F + Y+++M R+ L YDIDGLV+KV+ Sbjct: 243 FVYPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQ +G AR P+W I++KF ++ + +L+++ Q+GRTG +TPVARL+PV +GG + Sbjct: 303 NIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN + IK +DIRVGDRV+V+RAG+VIP+VV + R DAQ Sbjct: 363 VSNATLHNINEIKS-----------KDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQI 411 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P+ CP+C S++ + A +RCTGG C AQ ERLKHFVSR A +I+ LG Sbjct: 412 VEMPTNCPVCDSKI------ENVNDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ A I+ PADI+ L Q T + S N+ DSI K + Sbjct: 466 AKLIEQLV----AANLIKYPADIYKLNFEQLTG------LERMAAKSSQNVLDSITKSKE 515 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SL RFIF++GI+ +G + +LA ++ S ++F + LI + VG+I Sbjct: 516 PSLARFIFAIGIKDIGEVSSDALANHFGSLESFRDA----------KFEELIEINYVGEI 565 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 IA IV F+ + NI VE L + + E + K +V TG+ + R + Sbjct: 566 IANNIVSFWHDSLNIKIVEEFLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ E+ LL Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVILEDNLKDLL 678 >gi|254804544|ref|YP_003082765.1| DNA ligase [Neisseria meningitidis alpha14] gi|254668086|emb|CBA04596.1| DNA ligase [Neisseria meningitidis alpha14] Length = 841 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 248/842 (29%), Positives = 377/842 (44%), Gaps = 167/842 (19%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + + L ++ + YY P + D+EYD L R +A+ P+L P+ P Sbjct: 26 AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQ 82 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127 ++GGE +V H +P LSL ++ + ++ F R+ D Sbjct: 83 RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGKPE 139 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186 + +EPK DG I++ Y G V AA RGDG +GEDV+ I+ + IP L PE+IE Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVANIPLRLHGENTPELIE 199 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245 VRGEV + K DF ALN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259 Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303 A+ + L + LGF + NG V + E + PY+IDG+V Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMV 319 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV+ + Q++LG +R+PRW I+HKF ++A T + ID+QIGRTG +TPVARL+PV + Sbjct: 320 VKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428 Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451 +P+ P+ CPIC+S + R+ Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538 Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550 L + + N+ I + L Sbjct: 539 RLDIPTLQKMKEAADKTVAESDQMPSEDSSVGASGKHKKPPTKWAENILAGIESGKTPEL 598 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ--------------------EINNIIAH 590 RF+F+LGIRHVG A++LA+ + + ++ + A Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLEHVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658 Query: 591 NNDDWLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614 L+ +P + + AQA+ E Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEG 718 Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656 + P+N +E L + E S + K V TG Sbjct: 719 LQNDKALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINEAVAGKTFVLTG 778 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838 Query: 717 LL 718 LL Sbjct: 839 LL 840 >gi|325141882|gb|EGC64324.1| DNA ligase, NAD-dependent [Neisseria meningitidis 961-5945] Length = 841 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 251/838 (29%), Positives = 384/838 (45%), Gaps = 159/838 (18%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + + L ++ + YY P + D+EYD L R +A+ P+L P+ P Sbjct: 26 AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQ 82 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127 ++GGE +V H +P LSL ++ + ++ F R+ D + Sbjct: 83 RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPE 139 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186 + +EPK DG I++ Y G + AA RGDG +GEDV+ I+ + IP L PE+IE Sbjct: 140 YVIEPKFDGLAISLLYRDGVLIQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245 VRGEV + K DF ALN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259 Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTF-HGIVSYYNEMKSIRSTLPYDIDGLV 303 A+ + L + LGF + NG ++++Y M+ R LPY+IDG+V Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYGHMQQKRPELPYEIDGMV 319 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV+ + Q +LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV + Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428 Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451 +P+ P+ CPIC+S + R+ Sbjct: 429 QETAVAVSDGIGHRQDDLFAEAPAANQTQSVPLYKPYRLPTHCPICRSEIEREEGE---- 484 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA-DI 510 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + + DI Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVLHFADLYRLDI 542 Query: 511 FTLQRRQQTSTTKIENILGFGD----------------VSVTNLYDSINKRRNISLERFI 554 TLQ+ ++T+ + N+ I + L RF+ Sbjct: 543 PTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPVKWAENILAGIESGKTPELARFL 602 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQ--------------------EINNIIAHNNDD 594 F+LGIRHVG A++LA+ + + + + A Sbjct: 603 FALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM 662 Query: 595 WLSLIR--------------------------VPL--VGDIIAQAIVE------------ 614 L+ +P + + AQA+ E Sbjct: 663 IDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEGLQND 722 Query: 615 ---------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGTLQK 660 + P+N +E L + E S + K V TGTL Sbjct: 723 KALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPT 782 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV I++E + L LL Sbjct: 783 LKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSILSEAELLTLL 840 >gi|238926785|ref|ZP_04658545.1| DNA ligase (NAD(+)) [Selenomonas flueggei ATCC 43531] gi|238885317|gb|EEQ48955.1| DNA ligase (NAD(+)) [Selenomonas flueggei ATCC 43531] Length = 677 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 218/718 (30%), Positives = 352/718 (49%), Gaps = 45/718 (6%) Query: 12 LSI-EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 +S ++ + ELS L ++I + YY ++ I D ++D L R + A+P+L Sbjct: 1 MSKIDEVKTELSELRRKIRKYSKQYYDDNESEISDYDFDMLMMRLKKLEAAYPELI---T 57 Query: 71 PNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 N P +GG + V H +P LSL+ +++ E++R F+ I + F Sbjct: 58 KNSPTRTVGGSAQREVGVLVPHDVPMLSLQDVFSEEEIRAFVDNI-----LAHFPAAEFI 112 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHS-GEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG + +RYE G A RGDG GEDV+A R I + + L +P EVR Sbjct: 113 VEEKIDGLSLALRYENGVLARAITRGDGIVQGEDVTANARMIDDVVQELHDALPY-FEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247 GEVY+ + F +N+ +G KP+ANPRN A+G LR+L+ R L+ FV L ++ Sbjct: 172 GEVYMKRAAFAEVNERQELLGLKPFANPRNCAAGTLRQLDSRITKERRLSMFVFNLQRSD 231 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E M+ G R + E+ R +LPYDIDG V KV+ Sbjct: 232 GRMFSSHTEAYAFMQAQGIKTIANYRVCRMAEEVWDAIEEIGVRRGSLPYDIDGAVVKVN 291 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 F+++++LG A++PRW I++K+ ++ T L DI++ +GRTG +TP A +PV + G Sbjct: 292 SFAMREELGVTAKAPRWAIAYKYPPEEKETVLRDIELSVGRTGRITPTAVFDPVGLCGTR 351 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATLHN+DYI L DIR+GD +LV ++GE+IP+V ++ +R +++P Sbjct: 352 VERATLHNQDYIDSL-----------DIRIGDTILVYKSGEIIPRVKAVLKEKRPQNSRP 400 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + P CP+C + VR+ + A RC + C AQ L +FVSR A +I+GLG Sbjct: 401 YVIPDVCPVCGAHAVREAD------TADMRCQNPV-CPAQIENHLLNFVSRSAMDIKGLG 453 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + +E I ADIF+L ++ SV +I + Sbjct: 454 AAAVIALVHAE----YIHDIADIFSLHMHREELIASGLI---GRAKSVDQRLAAIEASKQ 506 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 ER + LGI +G A +L + + S + + ++ VP +G+I Sbjct: 507 NPPERLLTGLGIAGIGRAAAAALMQEFSSIDALQEA-------ARESPERILAVPDMGEI 559 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 AQ + EF+ + ++ L G + V + + K V TGTL + R + Sbjct: 560 TAQKLTEFFSSASACALLDRLRAAGVNFAGTRTERVGAALAGKSFVITGTLPTLSREECS 619 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 +T G +V +S+KTD ++ G+ G KL+KA+ L + I++E ++ + + Sbjct: 620 ALITAHGGLVKGSVSKKTDYLVAGEAAGRKLKKAEDLSIPILDEAALRAMISEEKDGV 677 >gi|256383839|gb|ACU78409.1| DNA ligase, NAD-dependent [Mycoplasma mycoides subsp. capri str. GM12] gi|256384670|gb|ACU79239.1| DNA ligase, NAD-dependent [Mycoplasma mycoides subsp. capri str. GM12] gi|296455996|gb|ADH22231.1| DNA ligase, NAD-dependent [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 668 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 228/712 (32%), Positives = 385/712 (54%), Gaps = 46/712 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S ++A ++ L+++++ YY P + D EYD + ++ +P+L S Sbjct: 1 MSKDKALLRINQLKEQLNLWSKQYYVDDNPSVDDIEYDLALKELISLETLYPELITS--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+GG ++ K+TH P LSL +++ ++ F T+I + D+ + E Sbjct: 58 DSPSQKVGGMVSEKFLKITHKTPMLSLGNVFSFDEFLDFNTQISKVSNTLDNQ---YVAE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++ YE G V AA RG+G GEDV+ ++ I +IP L +N E +EVRGE+ Sbjct: 115 LKIDGLSISLVYENGSLVSAATRGNGVVGEDVTINVKTIKSIP--LKINKKERVEVRGEI 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 Y+SK +F +N + + + NPRNAA+G LR+L+ + + + Sbjct: 173 YLSKAEFEKINQKRLLNNEDLFINPRNAAAGTLRQLDSKIVASRNLDAFLYYYISDDSNN 232 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 QY+ + K+ LGF N I +Y ++ ++++ L Y IDG+V+K+++ +L Sbjct: 233 LTQYQSILKLNELGFKTNKETMLCKNLDEIKAYIDKYTNLKNDLDYQIDGIVFKINDKNL 292 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q LG ++ P+W I++KF + T+LLDI +GRTG +T A+LEPV + GA I+ A Sbjct: 293 QNSLGFTSKIPKWAIAYKFPAEIKQTKLLDIFATVGRTGKITYNAKLEPVFLMGATISAA 352 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TL+N +YIK +D+R+ V +K+AG+VIP+V++ I +E + + F Sbjct: 353 TLNNAEYIKS-----------KDLRINSIVKIKKAGDVIPEVIEAIKDETFYNLEVFQPI 401 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 +CP C S + ++ N + +CS + L L+HF SR+A NI LG + L Sbjct: 402 LYCPNCHSLLEKNENE-------VDQFCINSSCSMKILRSLQHFSSREAMNIVSLGDRSL 454 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F + I+ +DI+ L+ + +I I FG S NL DSIN +N SLE Sbjct: 455 EILFNLK----IIQNISDIYRLEEYKD----EILAIENFGLKSYLNLIDSINMSKNNSLE 506 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + +F LGIRH+G++ A+ LA+ Y + N + + LI++ +G+ +A + Sbjct: 507 KVLFGLGIRHIGSKTAKILARKYQNIDNLMKA----------SYDELIQINSIGESLALS 556 Query: 612 IVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I+++++ N+ ++ L ++ + + N S I NK V TGTL + R + + + Sbjct: 557 IIDWFKIEDNLKLIDELKSFNINFNYLGAKINSDSIIANKSFVITGTLTR-PREEFKTLI 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 V +S++TD ++ G+N GSKLEKA++LGVKI++E+QF LL+ Sbjct: 616 ENNAGKVIGSISKQTDYLLAGNNVGSKLEKAKKLGVKIIDEQQFFDLLKSEK 667 >gi|330718928|ref|ZP_08313528.1| DNA ligase, NAD-dependent [Leuconostoc fallax KCTC 3537] Length = 681 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 239/717 (33%), Positives = 374/717 (52%), Gaps = 51/717 (7%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 + + L+ QA++E++ L+ +++ + YY+ P + D YDA R + AFP Sbjct: 3 PEFKAVSELTTAQAQQEIAKLQDDLTRYGVEYYEDDNPSVEDHVYDAFYARLVDLEAAFP 62 Query: 64 DLARSEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P P ++GG + L K+TH +P LSL ++++E+L+ + R + + Sbjct: 63 QFM---TPESPTQRVGGTNVKSELTKITHPVPMLSLGDVFSLEELQDWDARTTKALGFQS 119 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 D + LE KIDG + + YE G+ V A+ RG+G GEDV+A ++ I IP+ LS + Sbjct: 120 D----YNLELKIDGLAVALDYENGELVQASTRGNGTIGEDVTANVKTIQAIPQRLSEPL- 174 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 IEVRGE+Y+ K F LN + G P+ANPRNAA+G LR+L+ R L+ FV+ Sbjct: 175 -TIEVRGEIYMPKKSFAKLNQQRELEGLAPFANPRNAAAGSLRQLDAKVTKKRELSAFVY 233 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 + A+ Q LQ+ LG P N + + I SY R TL Y IDG Sbjct: 234 YTADFETLGAETQSGALQRFAALGLPTNTTNQVISVMSYISSYITHYTQQRDTLDYGIDG 293 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V KV+ LQ LG + PRW I++KF ++A T + DI+ +GRTG +TP A ++PV Sbjct: 294 VVVKVNALDLQLDLGNTVKIPRWAIAYKFPPEEALTTVRDIEWTVGRTGAVTPTAVMDPV 353 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G ++ A+LHN DY+ + IR+GD V + +AG++IP+V +I +R Sbjct: 354 QLAGTVVKRASLHNPDYL-----------NAKGIRIGDTVTLHKAGDIIPEVGQVIEEKR 402 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 D+ P+ P CP CQS +V A RC CSAQ ERL HF SR+A Sbjct: 403 SIDSVPYVIPVMCPACQSELVHIEGE------VALRCINPF-CSAQIQERLTHFASRNAM 455 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 NI+G+G + + K+ I+ A I+ L+ Q S + F + S NL+++ Sbjct: 456 NIDGMGPRVIAQLLKNN----LIQDVASIYALKEEQLLS------LDKFKEKSANNLFNA 505 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I + + SLER +F LGIR VGA+ A+ +AK + + + + Sbjct: 506 IQQSKQNSLERLLFGLGIRMVGAKAAKLIAKKFKDLTQLMHTTSA----------DIASI 555 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQ 659 +G IA ++V+F+ P+ V+ L+ + E + +S KK+V TG L+ Sbjct: 556 DGIGSTIADSMVQFFSTPQAQQLVQDLMAAGVNGKYLSDVEIDENSFFFGKKIVLTGKLE 615 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 ++ R +++ GA V +S KTD++I G + GSKL+KA LG+ + E+QF+ Sbjct: 616 QMSRPVIAKWLENHGASVVGSVSAKTDLVIAGHSAGSKLDKATGLGIPVWQEQQFID 672 >gi|325135742|gb|EGC58354.1| DNA ligase, NAD-dependent [Neisseria meningitidis M0579] Length = 841 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 248/842 (29%), Positives = 381/842 (45%), Gaps = 167/842 (19%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + + L ++ + YY P + D+EYD L R +A+ P+L P+ P Sbjct: 26 AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQ 82 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127 ++GGE +V H +P LSL ++ + ++ F R+ D + Sbjct: 83 RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPE 139 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186 + +EPK DG I++ Y G + AA RGDG +GEDV+ I+ + IP L PE+IE Sbjct: 140 YVIEPKFDGLAISLLYRDGVLIQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245 VRGEV + K DF ALN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259 Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTF-HGIVSYYNEMKSIRSTLPYDIDGLV 303 A+ + L + LGF + NG ++++Y M+ R LPY+IDG+V Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYGHMQQKRPELPYEIDGMV 319 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV+ + Q +LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV + Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428 Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451 +P+ P+ CPIC+S + R+ Sbjct: 429 QETAVAVSDGIGHRQDDLFAEAPAANQTQSVPLYKPYRLPTHCPICRSEIEREEGE---- 484 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538 Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550 L + + N+ I + L Sbjct: 539 RLDIPTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPTKWAENILAGIESGKTPEL 598 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ--------------------EINNIIAH 590 RF+F+LGIRHVG A++LA+ + + + + A Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAE 658 Query: 591 NNDDWLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614 L+ +P + + AQA+ E Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEG 718 Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656 + P+N +E L + E S + K V TG Sbjct: 719 LQNDKALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L Sbjct: 779 TLPTLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838 Query: 717 LL 718 LL Sbjct: 839 LL 840 >gi|313681943|ref|YP_004059681.1| DNA ligase, nad-dependent [Sulfuricurvum kujiense DSM 16994] gi|313154803|gb|ADR33481.1| DNA ligase, NAD-dependent [Sulfuricurvum kujiense DSM 16994] Length = 676 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 207/713 (29%), Positives = 354/713 (49%), Gaps = 58/713 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + + +++ + YY PI D EYD L + A H P S + P + Sbjct: 3 QTDYKNAVEQLKKYSYHYYVLDDPITTDEEYDILYHKVVAYEHEHPSEIIS---DSPTQR 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G K H SLE +++ E+L ++ RI + + F EPK DG Sbjct: 60 VGDVPQDKFDKAQHLSRMWSLEDLFDREELETWVNRITK-----GYGDVRFYCEPKFDGA 114 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + Y+KG V A RGDG GEDV+ + I +IP L + IE+RGEV I K D Sbjct: 115 SLNLIYDKGVLVQAITRGDGVEGEDVTQNAKTIQSIP--LRIEYKGRIEIRGEVVIFKED 172 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N E G +ANPRNAA+G LR+L+ +R L F +G+G + + K E Sbjct: 173 FEKINLERSRNGESLFANPRNAAAGSLRQLDTRITASRRLVFMPYGIG-ANTLEIKNLSE 231 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++ + LGF + + I ++Y+EM+ R +DG+V KVD ++Q +LG Sbjct: 232 RMEWVYGLGFRNPHMTHLCESADQIETFYHEMRVERDNFAMLLDGMVIKVDSIAVQDELG 291 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++PRW ++KF + T L ++ +Q+GR+G++TPVA +EPV+I G + +TLHN Sbjct: 292 YTVKNPRWAAAYKFPAIEKLTTLKEVIMQVGRSGVVTPVAIVEPVDIEGVTVERSTLHNF 351 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ +DIR+GD+V++ R+G+VIPK+V +I ER Q P+ CP+ Sbjct: 352 DEIER-----------KDIRIGDKVIILRSGDVIPKIVKVITAERTGSEQVIPRPTQCPV 400 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S ++ + A + C A+ + + +F S+ NI+GLG + ++ Sbjct: 401 CGSELLDEG---------ALIKCQNMGCEARVVNSIIYFASKQCLNIDGLGDKIVEALHS 451 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 A + +D+F L Q S + GF + NL D+I + RFI + Sbjct: 452 ----AGMVHEVSDLFGLTMDQLLS------LEGFKEKKSRNLLDAIAAAKGCDCWRFINA 501 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI H+G +++L + + A + ++ + G + ++I+EF Sbjct: 502 LGIEHIGEVASKTLCGAFGT------------AFDRSSREEILALEGFGGEMVESILEFV 549 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + N +E L ++P+ + + + K +V TG++ + R + + +LGA Sbjct: 550 RV--NSEKIERLRSILNPAAPVKIEAAENPFKGKSVVITGSMS-VPRDHIKVMLEELGAK 606 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729 V++ +S+KTD ++ G++ G+K +KA +LGV ++ E +F + + + + D Sbjct: 607 VASSVSKKTDYVVYGEDAGNKYDKAVELGVTLLTESEFREMC-EAGDSAPLPD 658 >gi|168216777|ref|ZP_02642402.1| DNA ligase, NAD-dependent [Clostridium perfringens NCTC 8239] gi|182381157|gb|EDT78636.1| DNA ligase, NAD-dependent [Clostridium perfringens NCTC 8239] Length = 662 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 209/711 (29%), Positives = 352/711 (49%), Gaps = 58/711 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +K + L +E++ + YY + D +YD + + P P Sbjct: 2 DKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE----TGYKLPYSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNSIFFT 129 ++G + K TH SL+K +E++R++ R +F ++ ++ + + Sbjct: 58 QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFVEEHNRTSDEELPPLKYI 117 Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 L K DG I + Y E G V A RG G GEDV+A ++ I +IP L ++ + +E+ Sbjct: 118 LTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEIH 175 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247 GE ++ F N E P N RN A+G LR LN + R L+ F + +G Sbjct: 176 GEAIMTTEAFEKYNSEA----ETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKE 231 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 K EML ++ GFP+++ +R+ T I + ++ IR L YDIDGLV +D Sbjct: 232 GAPFKTYMEMLNFIKVKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAID 291 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + ++ LG + P+W I++KF ++A+T+LLD++ +GR+G ++P A LEPV + G Sbjct: 292 DIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVT 351 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATL+N D I + +R+G V V+R+ +VIP+++ ++ + Sbjct: 352 VKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LEGTKE 399 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P CP C + +V + C L C Q ++ + HF R+A NI G Sbjct: 400 IEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFS 451 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ + F+ D IR +D++ L+ K+ ++ FG NL D+I K ++ Sbjct: 452 EKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKSKD 501 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +LE F++SLGI +VG + A+ L K + S +N + L+ V VGDI Sbjct: 502 CTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLENAT----------FEELVSVQDVGDI 551 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +A++I+EF++ R + + LL ++ + S K +V TGTL+ R + Sbjct: 552 VARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVVVTGTLENYSRTSIK 611 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 E + LGA VS +S+KTD +I G+ GSK +KA+ LGV I++EE+F ++ Sbjct: 612 EKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEFENMI 662 >gi|169347054|ref|ZP_02865996.1| DNA ligase, NAD-dependent [Clostridium perfringens C str. JGS1495] gi|169296737|gb|EDS78866.1| DNA ligase, NAD-dependent [Clostridium perfringens C str. JGS1495] Length = 662 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 209/711 (29%), Positives = 353/711 (49%), Gaps = 58/711 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +K + L +E++ + YY + D +YD + + P P Sbjct: 2 DKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELLDLEKE----TGYKLPYSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNSIFFT 129 ++G + K TH SL+K +E++R++ R +F ++ ++ + + Sbjct: 58 QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKYI 117 Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 L K DG I + Y E G V A RG G GEDV+A ++ I +IP L ++ + +E+ Sbjct: 118 LTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEIH 175 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247 GE ++ F N E P N RN A+G LR LN + R L+ F + +G Sbjct: 176 GEAIMTTEAFEKYNSEA----ETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKE 231 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 K EML ++ GFP+++ +R+ T I + ++ IR L YDIDGLV +D Sbjct: 232 GAPFKTYMEMLNFIKTKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAID 291 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + ++ LG + P+W I++KF ++A+T+LLD++ +GR+G ++P A LEPV + G Sbjct: 292 DIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVT 351 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATL+N D I + +R+G V V+R+ +VIP+++ ++ + Sbjct: 352 VKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LEGTKE 399 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P CP C + +V + C L C Q ++ + HF R+A NI G Sbjct: 400 IEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFS 451 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ + F+ D IR +D++ L+ K+ ++ FG NL D+I K ++ Sbjct: 452 EKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKSKD 501 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +LE F++SLGI +VG + A+ L K + S +N + + L+ V VGDI Sbjct: 502 CTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVGDI 551 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +A++I+EF++ R + + LL ++ + S K +V TGTL+ R + Sbjct: 552 VARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESLFMGKTVVVTGTLENYSRTSIK 611 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 E + LGA VS +S+KTD +I G+ GSK +KA+ LGV I++EE+F ++ Sbjct: 612 EKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEFENMI 662 >gi|28211984|ref|NP_782928.1| NAD-dependent DNA ligase LigA [Clostridium tetani E88] gi|75541732|sp|Q891I0|DNLJ_CLOTE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|28204427|gb|AAO36865.1| NAD-dependent DNA ligase [Clostridium tetani E88] Length = 668 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 196/714 (27%), Positives = 349/714 (48%), Gaps = 59/714 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E+ ++ + L +E++ + YY P + D EYD + + P Sbjct: 5 EEKKRRIHELIEELNKYAYEYYVLDNPTVSDKEYDKRYDELVNLEKETGFVLSY----SP 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR------FWQKKDDNSIFF 128 ++G + K TH SL+K NIE L+++I R + ++ + Sbjct: 61 TQRVGDTVLTQFDKYTHKSRLWSLDKAQNIEQLKEWINRNEKIIMEYNRLNEETLPMPTY 120 Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 L K DG + Y E G V A RG G GED+++ ++ I +P L + +IEV Sbjct: 121 ILTKKFDGLTVNCTYDESGILVKGATRGTGIIGEDITSQVKTIKCLP--LRIANNNLIEV 178 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246 RGE ++K F N++ P N RN A+G LR L+ R L+ F + +G + Sbjct: 179 RGEAIMTKEAFDKYNEKA----EIPLKNLRNGAAGALRNLDVRETAKRNLSAFFYDIGYS 234 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 K EM+ + +GFPV+ +++ I ++ IR+ L YDIDG+V + Sbjct: 235 EGNEFKTYMEMIGFLISMGFPVDPYIKECKDIVEIKDEIKYIEDIRNELNYDIDGIVIAI 294 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + ++ LG + PRW I++KF ++A+T+L+D++ +GR+G +TP A LE V +GGA Sbjct: 295 NHIKTREVLGYTVKFPRWAIAYKFEAEEATTKLIDVEWNVGRSGRVTPTALLESVELGGA 354 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 I ATL+N D I + +R+G V ++R+ +VIP+++ ++ + + + Sbjct: 355 TIKRATLNNMDDIIR-----------KKVRLGAEVFIRRSNDVIPEIMGVVESS-LENTE 402 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP C+S+++ + C L+C Q ++ L HF SR+A NIEG Sbjct: 403 EIKAPLKCPYCESKLINE--------GVHLFCENTLSCKPQLVKSLVHFASREAMNIEGF 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 ++ + F++ +I+ D++ +++ + + F + N+ ++I + Sbjct: 455 SEKTAEQFYEE----LNIKSIGDLYRVKKEDLLT------LDKFKEKKADNIMNAIENSK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 L FI++L I +VG + AR L K + + N L V +G+ Sbjct: 505 KPKLSSFIYALSIPNVGVKTARDLVKSFKTLDNIKNAT----------IEELTSVKDIGE 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 I+A +++EF++ +++ LL+ P + E ++ K +V TGTL+ R++ Sbjct: 555 IVANSVIEFFKQENINESIKELLELGVTPIMDITEIKKDNKFNGKTIVVTGTLEGYTRNE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + LGA VS +S+KTD ++ G+ GSK KA +LG++I+ EE+F ++ Sbjct: 615 IKEKLEALGAKVSGSVSKKTDFVLAGEEAGSKYNKAMELGIRIITEEEFNEMIN 668 >gi|308388851|gb|ADO31171.1| DNA ligase [Neisseria meningitidis alpha710] gi|325202538|gb|ADY97992.1| DNA ligase, NAD-dependent [Neisseria meningitidis M01-240149] gi|325207712|gb|ADZ03164.1| DNA ligase, NAD-dependent [Neisseria meningitidis NZ-05/33] Length = 841 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 248/842 (29%), Positives = 376/842 (44%), Gaps = 167/842 (19%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + + L ++ + YY P + D+EYD L R +A+ P+L P+ P Sbjct: 26 AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQ 82 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127 ++GGE +V H +P LSL ++ + ++ F R+ D Sbjct: 83 RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGKPE 139 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186 + +EPK DG I++ Y G V AA RGDG +GEDV+ I+ + IP L PE+IE Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVANIPLRLHGENTPELIE 199 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245 VRGEV + K DF ALN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259 Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303 A+ + L + LGF + NG V + E + PY+IDG+V Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMV 319 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV+ + Q++LG +R+PRW I+HKF ++A T + ID+QIGRTG +TPVARL+PV + Sbjct: 320 VKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428 Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451 +P+ P+ CPIC+S + R+ Sbjct: 429 QETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538 Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550 L + + N+ I + L Sbjct: 539 RLDIPTLQKMKETTDKTVAESDQTPSEGSSVGASGKHKKQPVKWAENILGGIESGKTPEL 598 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ--------------------EINNIIAH 590 RF+F+LGIRHVG A++LA+ + + + + A Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAE 658 Query: 591 NNDDWLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614 L+ +P + + AQA+ E Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEG 718 Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656 + P+N +E L + E S + K V TG Sbjct: 719 LQNDKALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838 Query: 717 LL 718 LL Sbjct: 839 LL 840 >gi|331703733|ref|YP_004400420.1| DNA ligase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802288|emb|CBW54442.1| DNA ligase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 668 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 226/712 (31%), Positives = 382/712 (53%), Gaps = 46/712 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S ++A ++ L+++++ YY P + D EYD + ++ +P+L S Sbjct: 1 MSKDKALLRINQLKEQLNLWSKQYYVDDNPSVDDIEYDLALKELISLETLYPELITS--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+GG ++ K+TH P LSL +++ ++ F T++ + D+ + E Sbjct: 58 DSPSQKVGGMVSEKFLKITHKTPMLSLGNVFSFDEFLDFNTQVSKVSNTLDNQ---YVAE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++ YE G V AA RG+G GEDV+ ++ I +IP L +N E +EVRGE+ Sbjct: 115 LKIDGLSISLVYENGSLVSAATRGNGVVGEDVTINVKTIKSIP--LKINKKERVEVRGEI 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 Y+SK +F +N + + + NPRNAA+G LR+L+ + + + Sbjct: 173 YLSKAEFEKINQKRLLNNEDLFINPRNAAAGTLRQLDSKIVASRNLDAFLYYYISDDSNN 232 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 QY+ + K+ LGF N I +Y ++ ++++ L Y IDG+V+K+++ +L Sbjct: 233 LTQYQSILKLNELGFKTNKETMLCKNLDEIKAYIDKYTNLKNDLDYQIDGIVFKINDKNL 292 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q LG ++ P+W I++KF + T+LLDI +GRTG +T A+LEPV + GA I+ A Sbjct: 293 QNSLGFTSKIPKWAIAYKFPAEIKQTKLLDIFATVGRTGKITYNAKLEPVFLMGATISAA 352 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TL+N +YIK +D+R+ V +K+AG+VIP+V++ I +E + + F Sbjct: 353 TLNNAEYIKS-----------KDLRINSIVKIKKAGDVIPEVIEAIKDETFYNLEKFKPI 401 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 +CP C S + ++ N + +CS + L L+HF SR+A NI LG + L Sbjct: 402 LYCPNCHSLLEKNENE-------VDQFCINSSCSMKILRSLQHFSSREAMNIVSLGDRSL 454 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F I+ +DI+ L+ + +I I FG S NL DSIN +N SLE Sbjct: 455 EILFN----LNIIKTISDIYRLEEYKD----QILEIENFGLKSYLNLIDSINMSKNNSLE 506 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + +F LGIRH+G++ A+ LA+ Y + N + + LI++ +G+ +A + Sbjct: 507 KVLFGLGIRHIGSKTAKILARKYQNIDNLMKA----------SYDELIQINSIGESLALS 556 Query: 612 IVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I+++++ N+ + L ++ + + N S I NK V TGTL + R + + + Sbjct: 557 IIDWFRIEDNLKLINELKSFNINFNYLGAKINSDSIIANKSFVITGTLTR-PREEFKTLI 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 V +S++TD ++ G+N GSKLEKA++LGV I++E+QF LL+ Sbjct: 616 ENNAGKVIGSISKQTDYLLAGNNVGSKLEKAKKLGVTIIDEQQFFDLLKSEK 667 >gi|325133819|gb|EGC56475.1| DNA ligase, NAD-dependent [Neisseria meningitidis M13399] Length = 841 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 247/842 (29%), Positives = 378/842 (44%), Gaps = 167/842 (19%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + + L ++ + YY P + D+EYD L R +A+ P+ P+ P Sbjct: 26 AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPEFKL---PDSPTQ 82 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127 ++GGE +V H +P LSL ++ + ++ F R+ D + Sbjct: 83 RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPE 139 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186 + +EPK DG I++ Y G V AA RGDG +GEDV+ I+ + IP L PE+IE Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVANIPLRLHGENTPELIE 199 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245 VRGEV + K DF+ALN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 200 VRGEVLMQKADFVALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259 Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303 + A+ + L + LGF + NG V + E + PY+IDG+V Sbjct: 260 QQDGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMV 319 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV+ + Q +LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV + Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428 Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451 +P+ P+ CPIC+S + R+ Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538 Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550 L + + N+ I + L Sbjct: 539 RLDIPTLQKMKEAADKTVAESDQMPSEDSSVGASGKHKKPPTKWAENILAGIESGKTPEL 598 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ--------------------EINNIIAH 590 RF+F+LGIRHVG A++LA+ + + ++ + A Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLEHVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658 Query: 591 NNDDWLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614 L+ +P + + AQA+ E Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKSIEG 718 Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656 + P+N +E L + E S + K V TG Sbjct: 719 LQTDKALPTDWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV I++E + L Sbjct: 779 TLPTLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSILSEAELLT 838 Query: 717 LL 718 LL Sbjct: 839 LL 840 >gi|89898194|ref|YP_515304.1| NAD-dependent DNA ligase LigA [Chlamydophila felis Fe/C-56] gi|123735917|sp|Q254X9|DNLJ_CHLFF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|89331566|dbj|BAE81159.1| DNA ligase [Chlamydophila felis Fe/C-56] Length = 662 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 228/701 (32%), Positives = 367/701 (52%), Gaps = 48/701 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R++ +L ++I D YY PII D +YD ++ +I P+ P + Sbjct: 7 REQYLALCKDIEEDDYRYYVLHDPIISDYDYDMKMQKLLSIEAQHPEWRVLW---SPSMR 63 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++ S VTHS P LS+ + +E+L F +R+ + + +TLE KIDG Sbjct: 64 LGDRISGSFPVVTHSHPMLSIANAYTLEELNDFFSRVEKTLG----YTPTYTLELKIDGI 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + IRYE+ V A RG+G GED++ IR I ++P L PE +EVRGEV+ ++ Sbjct: 120 AVAIRYEQRVLVQALSRGNGRQGEDITTNIRTIRSLPLRLPKEAPEFLEVRGEVFFTRAT 179 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N + +ANPRNAA G L+ L+ + N + G +E + Y+ Sbjct: 180 FEQINSIQRQSEKPEFANPRNAAGGTLKLLSAKEA-AQRNLELSIYGAWAEENTESHYDN 238 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L + GFPV RQ + +V +E+ IR LP +IDG+V KVD QK LG Sbjct: 239 LMLCQKWGFPVFGRPRQYKSVEEVVKALHEIAKIRDQLPMEIDGVVIKVDNTEDQKVLGM 298 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+ RW +++K+A +Q T L DI IQ+GRTG+LTPVA+L PV + G+ ++ A+L+NE+ Sbjct: 299 TAKHYRWALAYKYAPEQGETILEDILIQVGRTGVLTPVAKLRPVFLSGSKVSRASLYNEE 358 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ +DIR+GD V V++ GE+IPKVV + + +R +P+ P +CP+C Sbjct: 359 EIER-----------KDIRIGDTVYVEKGGEIIPKVVGVCLEKRPEGTKPWVMPEYCPVC 407 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 RV R+ + + + +CSA +E+++ FV R+A +IE LG++ + F Sbjct: 408 HERVSRESDKVSVR-------CTNSSCSAGTIEKIRFFVGREALDIEHLGEKVITKLFD- 459 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I DIF + + GF D S+ N+ SI K ++ LERFI +L Sbjct: 460 ---LGLIHRRCDIFQITEEDL------LQVPGFKDKSIKNVLKSIEKAKSAPLERFIAAL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI +VG A +LA+++LS L + +G +A++IV+++ Sbjct: 511 GIPYVGIGGANALAQHFLSLDAVMSA----------SLEELKVIDGIGSKVAESIVDYFH 560 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 N+ ++ +L + + S + K V TG+L+K+ R +A+ + G V Sbjct: 561 QSDNVEEIQKMLSLGVNVLPYSRASAS--CQGKTFVITGSLEKMTRSEAEASIRNCGGKV 618 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +S+ + ++VG +PGSKL+KAQ+L + I+NE L +L Sbjct: 619 GSSVSKSINYLVVGKDPGSKLKKAQELQIPILNESDLLKIL 659 >gi|253583310|ref|ZP_04860508.1| DNA ligase [Fusobacterium varium ATCC 27725] gi|251833882|gb|EES62445.1| DNA ligase [Fusobacterium varium ATCC 27725] Length = 688 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 221/731 (30%), Positives = 359/731 (49%), Gaps = 50/731 (6%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 MK+ +L E ++ ++ + L ++ ++ YY ++ +I D EYD L + Sbjct: 1 MKEMKLNFFEENDMKTDKERIEKLRADLLKYNQYYYTNNESLISDVEYDMLMNELKDLEE 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118 +P+ P +G KVTH P LSL +N E++ FI RI + Sbjct: 61 KYPEYK---SEASPTVIVGASNLRENKFQKVTHRKPMLSLSNTYNEEEIGDFIDRIKKLL 117 Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 ++++ I + LE K+DG I+I+YEKGK V RGDG GEDV+ I I TIP L Sbjct: 118 PEENN--IKYALELKLDGLSISIQYEKGKLVKGVTRGDGAIGEDVTENILEIETIPHTLK 175 Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LN 237 + IE+RGE+ + + F LN+ + G + +ANPRNAASG LR+++ + I L+ Sbjct: 176 EPL--DIEIRGEIVLPISKFETLNERRMEAGEEVFANPRNAASGTLRQIDASIIKERGLD 233 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 + + + + E ++ + LG T + + + + L Y Sbjct: 234 CYFYFIVDAKNYGIQTHSESIKYLESLGIKTTGVCEVLGTASALKKRIDYWEQEKEKLDY 293 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 + DG+V KVD +LG +SPRW I++KF KQ +T LL I Q+GRTG +TPVA Sbjct: 294 ETDGMVIKVDNLDFWDKLGNTTKSPRWAIAYKFPAKQVTTTLLGITWQVGRTGKVTPVAE 353 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 LE V++ G+ + A+LHN I+ +DIR+GD+V +++A E+IP+VV I Sbjct: 354 LEEVSLSGSKVKRASLHNFHEIER-----------KDIRIGDKVFIEKAAEIIPQVVKSI 402 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 R + + P CP+C S V R+ K C + R+++FVS Sbjct: 403 KEFRDGSEKMITEPDKCPVCGSPVAREEGQVDIK-------CTNPVCPGKVKGRIEYFVS 455 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 RDA NI G G + ++ + I+ DI+ L+ ++ +ENI G SV N Sbjct: 456 RDAMNIGGFGSKMVEKMLE----LGFIKNVGDIYDLKDHKE----DLENIEKMGKRSVEN 507 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L DSI + + I++LGI +G + LA+ + N + + Sbjct: 508 LLDSIEASKKRDYSKVIYALGIPFIGKYSGKILAEASRNIDNLMK----------MEIEE 557 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVF 654 L+ + +GD A+A+ +F+++ NI + L E K +F Sbjct: 558 LMEIDGIGDKGAKAVYDFFRDEENIELINILRGHGLQFAMEEKEEEDQSDKIFSGKTFLF 617 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQ 713 TGTL+ +R + +E + +LG + +S+ D +I+G+ GSKL+KAQ+LG VKI+ EE+ Sbjct: 618 TGTLKNFKREEIKEEIEKLGGKNLSAVSKNLDYLIIGEKAGSKLKKAQELGTVKILTEEE 677 Query: 714 FLFLLQQYNTT 724 F+ + + + Sbjct: 678 FIEICKNNDKN 688 >gi|325129804|gb|EGC52612.1| DNA ligase, NAD-dependent [Neisseria meningitidis OX99.30304] Length = 841 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 248/842 (29%), Positives = 381/842 (45%), Gaps = 167/842 (19%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + + L ++ + YY P + D+EYD L R +A+ P+L P+ P Sbjct: 26 AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQ 82 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127 ++GGE +V H +P LSL ++ + ++ F R+ D + Sbjct: 83 RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPE 139 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186 + +EPK DG I++ Y G + AA RGDG +GEDV+ I+ + IP L PE+IE Sbjct: 140 YVIEPKFDGLAISLLYRDGVLIQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245 VRGEV + K DF ALN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259 Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTF-HGIVSYYNEMKSIRSTLPYDIDGLV 303 A+ + L + LGF + NG ++++Y M+ R LPY+IDG+V Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYGHMQQKRPELPYEIDGMV 319 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV+ + Q +LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV + Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428 Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451 +P+ P+ CPIC+S + R+ Sbjct: 429 QETAVAVSDGIGHRQDDLFAEAPAANQTQSVPLYKPYRLPTHCPICRSEIEREEGE---- 484 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538 Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550 L + + N+ I + L Sbjct: 539 RLDIPTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPTKWAENILAGIESGKTPEL 598 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ--------------------EINNIIAH 590 RF+F+LGIRHVG A++LA+ + + + + A Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAE 658 Query: 591 NNDDWLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614 L+ +P + + AQA+ E Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEG 718 Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656 + P+N +E L + E S + K V TG Sbjct: 719 LQNDKALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838 Query: 717 LL 718 LL Sbjct: 839 LL 840 >gi|15835041|ref|NP_296800.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum Nigg] gi|270285206|ref|ZP_06194600.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum Nigg] gi|270289225|ref|ZP_06195527.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum Weiss] gi|301336602|ref|ZP_07224804.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum MopnTet14] gi|13626415|sp|Q9PKP2|DNLJ_CHLMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|7190466|gb|AAF39279.1| DNA ligase [Chlamydia muridarum Nigg] Length = 660 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 224/704 (31%), Positives = 363/704 (51%), Gaps = 49/704 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +L E+ HD YY +P I D YD R I P+ P P Sbjct: 6 QDYYIALCTELIEHDRRYYVLDRPTISDYSYDMKMRELQKIEAQHPEWKV---PWSPTIY 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + V HS P +S+ ++++E+L +F +R + ++LE KIDG Sbjct: 63 LGDRPSGQFPVVPHSHPMVSIANVYSLEELEEFFSRTEKLLG----YFPTYSLELKIDGI 118 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + IRYE F A RG+G GED++A + I ++P L + PE +EVRGEV++S Sbjct: 119 AVAIRYENRTFAQALSRGNGVKGEDITANVSTIRSLPMTLPQDAPEEVEVRGEVFLSYQA 178 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F LN G+ +ANPRNAA G L+ L+ + N + G + +E Sbjct: 179 FEKLNICQREQGKLEFANPRNAAGGTLKLLSSREA-AKRNLDLSIYGLITNREEHSHFEN 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L GFP+ +Q T ++ E++ +RS LP IDG+V KVD + Q +LG Sbjct: 238 LGLCAHWGFPIAGMPKQCRTKEEVIERIREVEGMRSRLPMAIDGVVVKVDSVAEQHRLGL 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++ RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+NED Sbjct: 298 TSKHYRWAIAYKYAPERAETILQDITVQVGKTGILTPVAELTPVLLSGSRVSRASLYNED 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ +DIR+GD V V++ GE+IPK+V I + +R PD++P+ PS CP+C Sbjct: 358 EIEK-----------KDIRIGDSVYVEKGGEIIPKIVGINLAKRSPDSKPWKMPSLCPMC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 + V+++ + RCT L + F S+ A NI+ LG++ + F+ Sbjct: 407 HNPVIKER--------VSVRCTNPLCLGGMLEKIC-FFASKGALNIDHLGEKVIAKLFE- 456 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 IR +D+F L + GF D SV NL SI + ++L+RF+ +L Sbjct: 457 ---MGLIRSCSDVFALTENDLK------QVPGFKDRSVHNLLASIAGAKEVTLDRFLTAL 507 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I VG+ A +LA ++ + + L+ + +G +A +I++F+ Sbjct: 508 SIPFVGSSGAIALADHFGTLDKVMKA----------SLDELLSIEGIGQKVAASIIDFFS 557 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 N+ + ++E+ I + + + ++ K V TGTLQ++ R +A+E + LG + Sbjct: 558 KTENVEEICR-MQELGVRILPKQVDRWAPLQGKIFVLTGTLQEMTRLQAEERIRSLGGKI 616 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 S+ +S+ T ++VG GSKL+KAQ+LGV+++ E L +L Q Sbjct: 617 SSSVSKNTYAVVVGREAGSKLKKAQELGVQVLEESDLLKILNQN 660 >gi|325143946|gb|EGC66256.1| DNA ligase, NAD-dependent [Neisseria meningitidis M01-240013] gi|325206489|gb|ADZ01942.1| DNA ligase, NAD-dependent [Neisseria meningitidis M04-240196] Length = 841 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 248/842 (29%), Positives = 376/842 (44%), Gaps = 167/842 (19%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + + L ++ + YY P + D+EYD L R +A+ P+ P+ P Sbjct: 26 AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPEFKL---PDSPTQ 82 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127 ++GGE +V H +P LSL ++ + ++ F R+ D + Sbjct: 83 RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPE 139 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186 + +EPK DG I++ Y G V AA RGDG +GEDV+ I+ + IP L PE+IE Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVANIPLRLHGENTPELIE 199 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245 VRGEV + K DF ALN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259 Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303 A+ + L + LGF + NG V + E + PY+IDG+V Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMV 319 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV+ + Q++LG +R+PRW I+HKF ++A T + ID+QIGRTG +TPVARL+PV + Sbjct: 320 VKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428 Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451 +P+ P+ CPIC+S + R+ Sbjct: 429 QETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538 Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550 L + + N+ I + L Sbjct: 539 RLDIPTLQKMKETTDKTVAESDQTPSEGSSVGASGKHKKQPVKWAENILGGIESGKTPEL 598 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ--------------------EINNIIAH 590 RF+F+LGIRHVG A++LA+ + + + + A Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAE 658 Query: 591 NNDDWLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614 L+ +P + + AQA+ E Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEG 718 Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656 + P+N +E L + E S + K V TG Sbjct: 719 LQNDKALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV I++E + L Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSILSEAELLT 838 Query: 717 LL 718 LL Sbjct: 839 LL 840 >gi|190570889|ref|YP_001975247.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019404|ref|ZP_03335210.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|254782310|sp|B3CPS1|DNLJ_WOLPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190357161|emb|CAQ54574.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994826|gb|EEB55468.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 651 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 274/696 (39%), Positives = 396/696 (56%), Gaps = 54/696 (7%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 L+ +I+YH+ YYQ SKP I D+EYD LK++ AI + +G Sbjct: 9 EKLQNQINYHNILYYQKSKPEISDAEYDELKKKLAAIEPE-----AYATQDS----VGAP 59 Query: 82 MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141 + KV H P LSLE ++ + + KF+++I RF + I EPKIDG + Sbjct: 60 PDERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFLIA---DEIEILCEPKIDGLSFSA 116 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201 YE GKFV AA RGDG GEDV+ + I P+ L +EVRGE+YIS +DFL L Sbjct: 117 IYEDGKFVKAATRGDGFVGEDVTHNVATIKGFPKFLQDV-QGRLEVRGEIYISNSDFLKL 175 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 N+ +ANPRNAA+G L++LN + + K Q E+L+K+ Sbjct: 176 NEN------NEFANPRNAAAGSLKQLNANITAKRP--LRYFAYSLIGGIEKSQSEVLEKL 227 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 LGF VN ++ +G++ +YNE+ R L YDIDG+VYKV++ LQ +LG ++ Sbjct: 228 EKLGFCVNEHRSLTSSLNGMLKFYNEIYDCRYNLDYDIDGIVYKVNDLVLQSRLGSTHKA 287 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PR +++KF+ A T+L I IQ+GRTG+LTPVA L PVNIGG L++ A+LHN+D IK Sbjct: 288 PRSALAYKFSAIYAKTKLNKIFIQVGRTGVLTPVADLVPVNIGGVLVSRASLHNQDEIKR 347 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +DIR GD V +KRAG+VIP++V + RH + F FP CP C S+V Sbjct: 348 -----------KDIREGDVVTIKRAGDVIPQIVKVDEGSRHTNMPEFVFPDICPECGSKV 396 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 + A RC C AQ +E+LKHFVS+DAF+I GLG++Q+ FF+ E Sbjct: 397 QIE--------GVAVRCPEEFNCKAQIVEKLKHFVSKDAFDIVGLGEKQIKFFYDLE--- 445 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 IR DIF L+ R + + K + G+G+ S+ NL +I RR ISL+RFIFSLGIR Sbjct: 446 -LIRQIPDIFILEERLKEFSLKEHH--GWGEKSIANLLSAIQSRRVISLDRFIFSLGIRF 502 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 +G +A LA YY+SY N+ +++ L+ + +G+ +A+++ F+ RN Sbjct: 503 IGQVVAELLANYYVSYDNWYNSMSSNDV-------ELVGIDGIGEKVAESLKSFFSQERN 555 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I + L + + + S + NK +VFTG L+ + R +A+ LGA +S+ L Sbjct: 556 IKMLNDLTAYLQI-LPVSSNSSDSFLNNKIIVFTGKLRAMSRGEAKVRAKVLGAKISSSL 614 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 S KTD +I G++PGSK +KA +LGV+I++EEQ+ L Sbjct: 615 STKTDYLIAGEDPGSKYKKAMELGVEILDEEQWNRL 650 >gi|261392961|emb|CAX50546.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Neisseria meningitidis 8013] Length = 841 Score = 480 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 247/842 (29%), Positives = 376/842 (44%), Gaps = 167/842 (19%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + + L ++ + YY P + D+EYD L R +A+ P+ P+ P Sbjct: 26 AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDRLFRELEALELNHPEFKL---PDSPTQ 82 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127 ++GGE +V H +P LSL ++ + ++ F R+ D Sbjct: 83 RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGKPE 139 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186 + +EPK DG I++ Y G V AA RGDG +GEDV+ I+ + IP L PE+IE Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245 VRGEV + K DF ALN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259 Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303 A+ + L + LGF + NG V + E + PY+IDG+V Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMV 319 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV+ + Q++LG +R+PRW I+HKF ++A T + ID+QIGRTG +TPVARL+PV + Sbjct: 320 VKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428 Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451 +P+ P+ CPIC+S + R+ Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538 Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550 L + + N+ I + L Sbjct: 539 RLDIPTLQKMKEAADKTVAESDQMPSEDSSVGASGKHKKPPTKWAENILAGIESGKTPEL 598 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ--------------------EINNIIAH 590 RF+F+LGIRHVG A++LA+ + + ++ + A Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLEHVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658 Query: 591 NNDDWLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614 L+ +P + + AQA+ E Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEG 718 Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656 + P+N +E L + E S + K V TG Sbjct: 719 LQNDKALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINEAVAGKTFVLTG 778 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838 Query: 717 LL 718 LL Sbjct: 839 LL 840 >gi|42561289|ref|NP_975740.1| DNA ligase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|81400468|sp|Q6MSK8|DNLJ_MYCMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|42492787|emb|CAE77382.1| DNA ligase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320499|gb|ADK69142.1| DNA ligase (NAD(+)) [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 668 Score = 480 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 228/712 (32%), Positives = 383/712 (53%), Gaps = 46/712 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S ++A ++ L+++++ YY P + D+EYD + ++ +P+L S Sbjct: 1 MSKDKALLRINQLKEQLNLWSKQYYVDDNPSVDDTEYDLALKELISLETLYPELITS--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+GG ++ K+TH P LSL +++ ++ F T+I + D+ + E Sbjct: 58 DSPSQKVGGMVSEKFLKITHKTPMLSLGNVFSFDEFLDFNTQISKISNTLDNQ---YVAE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++ YE G V AA RG+G GEDV+ R I +IP L ++ E +EVRGE+ Sbjct: 115 LKIDGLSISLVYENGSLVSAATRGNGVVGEDVTINARTIKSIP--LKISKKERVEVRGEI 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 Y+SK +F +N + + + NPRNAA+G LR+L+ + + + Sbjct: 173 YLSKAEFEKINQKRLLNNEDLFINPRNAAAGTLRQLDSKIVASRNLDAFLYYYISDDSNN 232 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 QY+ + K+ LGF N I +Y ++ ++++ L Y IDG+V+K+++ +L Sbjct: 233 LTQYQSILKLNELGFKTNKETMLCKNLDEIKAYIDKYTNLKNDLDYQIDGIVFKINDKNL 292 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q LG ++ P+W I++KF + T+LLDI +GRTG +T A+LEPV + GA I+ A Sbjct: 293 QNSLGFTSKIPKWAIAYKFPAEIKQTKLLDIFATVGRTGKITYNAKLEPVFLMGAKISAA 352 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TL+N +YIK +D+R+ V +K+AG+VIP+V++ I +E + F Sbjct: 353 TLNNAEYIK-----------TKDLRINSIVKIKKAGDVIPEVIEAIKDEDFYKLEKFKPA 401 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 +CP C S + ++ N + +CS + L L+HF SR+A NI LG + L Sbjct: 402 LYCPNCHSLLEKNENE-------VDQFCINSSCSMKILRSLQHFSSREAMNIVSLGDRSL 454 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F + I+ +DI+ L+ + +I I FG S NL DSIN +N SLE Sbjct: 455 EILFNLK----IIQNISDIYKLEEYKD----QILAIDNFGLKSYLNLIDSINMSKNNSLE 506 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + +F LGIRH+G++ A+ LA+ Y + N + LI++ +G+ +A + Sbjct: 507 KVLFGLGIRHIGSKTAKILARKYQNIDNLMSA----------SYDELIQINSIGESLALS 556 Query: 612 IVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I+++++ N+ ++ L ++ + + N S I NK V TGTL + R + + + Sbjct: 557 IIDWFKIEDNLKLIDELKSFNINFNYLGAKINSDSIIANKSFVITGTLTR-PREEFKTLI 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 V +S++TD ++ G+N GSKLEKA++LGVKI++E+QF LL+ Sbjct: 616 ENNAGKVIGSISKQTDYLLAGNNVGSKLEKAKKLGVKIIDEQQFFDLLKSEK 667 >gi|297626017|ref|YP_003687780.1| DNA ligase (NAD+) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921782|emb|CBL56340.1| DNA ligase (NAD+) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 764 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 207/723 (28%), Positives = 351/723 (48%), Gaps = 54/723 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + L +EI + YY KP I D+ YD L + +P L P+ P + Sbjct: 29 QRRHAELVKEIDDAQEAYYGRDKPFITDALYDELMLELQKLEAEYPSL---RTPDSPTQR 85 Query: 78 IGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +G +TH LSL+ +++I++L++++TR ++ + E KIDG Sbjct: 86 VGAPQEETDFSPLTHPSQMLSLDDVFSIDELKEWMTRTEAALG----HTPEWLCEVKIDG 141 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV----LSLNIPEIIEVRGEVY 192 I ++Y G+ AA RGDG GE+++ R I IP+ + + + E RGEV+ Sbjct: 142 LAIDLQYVNGRLQTAATRGDGRVGENITPNARTIKAIPQRLRPDPAQDFLALFEARGEVF 201 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + +F A ND++ G+ +ANPRNAA+G LR+ +P R L+ HGLG + Sbjct: 202 VPLKEFAAYNDKLADQGKPQFANPRNAAAGSLRQKDPRVTAQRPLSSICHGLGVADGLAV 261 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q + M+ G P++ + ++ ++ + R L + IDG+V KVD F+ Sbjct: 262 TRQSDAYAVMKAWGLPISPYNKVVHSLDEVLDFITYYGQHRHDLIHQIDGIVVKVDSFAE 321 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+QLG +R+PRW I+ K+ ++ +TRLLDI +++GRTG +TP +EPV + G+++++A Sbjct: 322 QQQLGVTSRAPRWAIAFKYPPEEVNTRLLDIRVKVGRTGRVTPYGVMEPVQVAGSVVSSA 381 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN ++ + + +GD V++++AG+VIP++V +V R +PF P Sbjct: 382 TLHNAYEVER-----------KGVLIGDMVVLRKAGDVIPEIVGPVVEMRTGAERPFVMP 430 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C +++ + + RC +C AQ ERL +R AF+IE LG Q Sbjct: 431 THCPSCGTKLASE-----KESDKDIRCPNSKSCPAQLRERLFSLAARSAFDIEALGYQGA 485 Query: 492 DFFFK----SEDPAFSIRIPADIFTLQRRQQTSTTKIENIL-----------GFGDVSVT 536 D + + P + T+ + +T + + Sbjct: 486 DAILRAGVLDNEAQLFNLTPEQLVTVPFYTRGATPRELKEPALVPPPGIRDGRVLSANGR 545 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 L +++ R+ L R + +L IRHVG AR+LA + S Sbjct: 546 RLLENLRTARHQPLWRVLVALSIRHVGPTAARALAARFGSMDAIRAA----------GVE 595 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 L VG IIA+A+ +++ ++ + A + + + +V TG Sbjct: 596 ELADTDGVGLIIAEAVRDWFTVDWHLEILNAWAADGVSMADEKSARPAQTLRGLTVVVTG 655 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +LQ R A+ +T G + +SR TD ++VG+N GSK +A+QLGV +++E QF Sbjct: 656 SLQDFTRDSAKAAITDRGGKAAGSVSRHTDYVVVGENAGSKQARAEQLGVPMLDEAQFRE 715 Query: 717 LLQ 719 LL+ Sbjct: 716 LLE 718 >gi|261377933|ref|ZP_05982506.1| DNA ligase, NAD-dependent [Neisseria cinerea ATCC 14685] gi|269145793|gb|EEZ72211.1| DNA ligase, NAD-dependent [Neisseria cinerea ATCC 14685] Length = 831 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 246/853 (28%), Positives = 382/853 (44%), Gaps = 179/853 (20%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L ++ + YY P + D+EYD L R +A+ P+L P+ P + Sbjct: 5 AQHIRRLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128 +GGE +V H +P LSL ++ + ++ F R+ D + + Sbjct: 62 VGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPEY 118 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187 +EPK DG I++ Y G V AA RGDG +GEDV+ ++ + IP L PE+IEV Sbjct: 119 VIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIEV 178 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246 RGEV + K DF ALN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 179 RGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVARQ 238 Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVY 304 A+ + L + LGF + NG V + E + PY+IDG+V Sbjct: 239 QGGFEAEEHIQELAYFQELGFSLPNGNFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMVV 298 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + Q++LG +R+PRW I+HKF ++A T + ID+QIGRTG +TPVARL+PV +G Sbjct: 299 KVNSLAQQRELGFISRAPRWAIAHKFPAEEALTVVEAIDVQIGRTGAVTPVARLQPVFVG 358 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407 Query: 425 A---------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451 +P+ P+ CPIC+S + R+ Sbjct: 408 ETAVMGLSDGIKYQQDDLFAEAPAANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 463 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 464 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGQKQIEQLVGQD----LVRHFADLY 517 Query: 512 TLQRRQQTSTTKIENI-------------------------LGFGDVSVTNLYDSINKRR 546 L + + N+ I + Sbjct: 518 RLDIPTLQKMKETADKGSSENEDGDAETVSGDLSERNTQNGKKQPTKWAENILAGIEASK 577 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA----------------- 589 L RF+F+LGIRHVG A++LA+ + S ++ + I+A Sbjct: 578 TPELSRFLFALGIRHVGERTAKTLAQAFGSLEHVRRAPEPILACLPDIGTVVAHSIAYFF 637 Query: 590 ---HNNDDWLSLIR--------------------------VPL--VGDIIAQAIVE---- 614 L+ +P + + AQA+ E Sbjct: 638 AQDAQQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGK 697 Query: 615 -----------------FYQNPRNICAVEALLKEVSPSIGRHEKNV------------SS 645 + P+N +E L + + +++ + Sbjct: 698 SIEGLQTDKALPADWQAWRSEPQNAALLENLKTFFAQTSSENQEATVSECAASPWDGLNE 757 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 + K V TGTL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA LG Sbjct: 758 AVAGKTFVLTGTLPTLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALG 817 Query: 706 VKIMNEEQFLFLL 718 V +++E + L LL Sbjct: 818 VSVLSEAELLTLL 830 >gi|315649754|ref|ZP_07902837.1| NAD-dependent DNA ligase LigA [Paenibacillus vortex V453] gi|315274728|gb|EFU38109.1| NAD-dependent DNA ligase LigA [Paenibacillus vortex V453] Length = 670 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 210/715 (29%), Positives = 341/715 (47%), Gaps = 60/715 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L E++ ++ YY +P++ D EYDAL + A+ P+ P + Sbjct: 4 KEKMGKLITELNNYNYHYYTLDQPLVSDKEYDALYDQLVALEAE----TGVTLPDSPTQR 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ----KKDDNSIF---FTL 130 +GGE+ H P SL+K NIE LR + R+ R K N + + L Sbjct: 60 VGGEILKGFAPHRHLAPLWSLDKAQNIEQLRTWHDRVVRLVNDYNTKNPGNPLPNPCYAL 119 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K DG + + Y+ GK V A+ RG+G GE + ++ I ++P + + IEV+GE Sbjct: 120 ELKFDGLTLNLTYQDGKLVQASTRGNGAVGEGILPQVKTIKSVPLTIPYD-EGTIEVQGE 178 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 ++ + N +P N RNAA+G LR L+P R LN + + +G + I Sbjct: 179 GIMNLSVLEKYNQTA----AEPLKNARNAAAGALRNLSPKVTAERKLNAYFYNVGYSDGI 234 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 EM+ +R VN + F ++ +++ RS L Y IDG V KV +F Sbjct: 235 TFADHKEMMDFLRENRLKVNPYIFYFEQFDDVMEQLADIEKRRSELDYLIDGAVVKVTDF 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +++ LG + PRW +++KF ++ +T L + +GRTG +TP+AR+EPV + G + Sbjct: 295 RIREALGYTDKFPRWAVAYKFEAEETTTVLQSVTWNVGRTGKITPLARVEPVELAGVTVQ 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 N TL+N G + R +G RV ++R+ +VIP+++ + E + F Sbjct: 355 NCTLNNI---------GDIERKNLKFALGSRVFIRRSNDVIPEILGKVTEENDGEEILF- 404 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C + + A C C Q + R+ HF SRDA +IE + Sbjct: 405 -PVECPSCGFPLEQR--------GAHLFCNNKTGCKPQIVARITHFASRDAMDIETFSDK 455 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ +R PAD++TL S + + FG+ NL D+I K + Sbjct: 456 TAIQLYEE----LGVREPADLYTL------SFDSLVKLERFGEKKAQNLLDAIEKSKERD 505 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L F+F+LGI + G + LA +Y L+ +P VG I+A Sbjct: 506 LASFLFALGIPNTGKSTTKMLADHYRDLHRVMAAT----------AEELVELPDVGGIVA 555 Query: 610 QAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 +I ++ +P ++E +L + S K +V TGTL + R +A Sbjct: 556 DSIAGYFADPFAQASIEKMLSLGVQAQAPEAPKPVSSDSYFSGKTVVLTGTLHLLTREEA 615 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFLLQQ 720 E + LGA V+ +S+KTD++I G+ GSKL KAQQLG+ I+ +EE+F+ LL + Sbjct: 616 TERLEALGAKVTGSVSKKTDLLIAGEKAGSKLAKAQQLGIDILEDEEEFVRLLNE 670 >gi|182419331|ref|ZP_02950583.1| DNA ligase, NAD-dependent [Clostridium butyricum 5521] gi|237666454|ref|ZP_04526439.1| DNA ligase, NAD-dependent [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376662|gb|EDT74234.1| DNA ligase, NAD-dependent [Clostridium butyricum 5521] gi|237657653|gb|EEP55208.1| DNA ligase, NAD-dependent [Clostridium butyricum E4 str. BoNT E BL5262] Length = 663 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 201/710 (28%), Positives = 349/710 (49%), Gaps = 57/710 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 ++++ L ++++ + YY P + D EYD + + P P Sbjct: 2 DKKEKIKELVEQLNNYSYKYYVLDDPSVTDKEYDKIYDELKKLEEE----TGFVLPYSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF-----WQKKDDNSIFFTL 130 ++G + K TH SL+K +IE++ + R +F + ++ + + L Sbjct: 58 LRVGDIVLDGFEKYTHKAKLWSLDKAQSIEEIIDWHNRNVKFVNDMRLKGENLPDLKYVL 117 Query: 131 EPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 K DG I + Y E+G AA RG G+ GE+V+A ++ I +IP + N I+EV G Sbjct: 118 TKKFDGLTINLTYNEEGVMEIAATRGTGNIGENVTAQVKTIKSIPLKIENNH--ILEVHG 175 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSE 248 E +++ F N+ + P N RN A+G LR LN + R L+ F + +G Sbjct: 176 EAVMTQEAFDKYNESA----QVPLKNLRNGAAGALRNLNVKETARRNLSAFFYDIGYKEG 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K EML ++ G P+++ ++ T I + + SIR L YDIDGLV +D+ Sbjct: 232 SPFKTYLEMLNFIKEKGLPMDDYMKVCTTIDEIQEQIDYINSIRFDLNYDIDGLVVAIDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 ++ +G + P+W I++KF ++A+T+LL ++ +GR+G L P A LEPV + G + Sbjct: 292 MRTRELMGYTVKFPKWAIAYKFEAQEATTKLLGVEWNVGRSGRLAPTAILEPVELAGVTV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATL+N D I + +++G V V+R+ +VIP+++ I+ A+ Sbjct: 352 KRATLNNMDDIAR-----------KGVKIGADVFVRRSNDVIPEIMGIVPET-LDGAEDI 399 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C S ++ D A + C L+C Q ++ + H+ R+A NI G + Sbjct: 400 KPPTECPACGSHIILD--------GAHYFCENTLSCKPQMVKSIVHYACREAMNIAGFSE 451 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + F+ +I+ +D++ L+ + + FG NL ++I + Sbjct: 452 RTAEQLFEK----LNIKSISDLYKLKEEELID------LEKFGPKKAQNLLEAIENSKEC 501 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L FI++LGI +VG + A+ L + S + + L+ VP VGDI+ Sbjct: 502 ELHAFIYALGIPNVGVKTAKDLVSRFKSIEGLKNAT----------FEELVSVPDVGDIV 551 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 AQ ++ F++ + + ++ LL + + K +V TG+LQ R + +E Sbjct: 552 AQDVMSFFKEEKVLETIDELLALGVNPKFEEFEVTENPFMGKTVVATGSLQNYSRSEIKE 611 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD +I G+ GSKL KAQ+LGVK+++EE+F +L Sbjct: 612 KLESLGAKVAGSVSKKTDYVIAGEAAGSKLTKAQELGVKVLSEEEFEEIL 661 >gi|222481049|ref|YP_002567286.1| DNA ligase, NAD-dependent [Halorubrum lacusprofundi ATCC 49239] gi|254781342|sp|B9LU22|DNLJ_HALLT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|222453951|gb|ACM58216.1| DNA ligase, NAD-dependent [Halorubrum lacusprofundi ATCC 49239] Length = 710 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 225/735 (30%), Positives = 360/735 (48%), Gaps = 59/735 (8%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 P+ ALS ++A ++ S L I HD YY + P+I D YD L R + + F Sbjct: 24 FEPVGALSEDEATEQASLLRAAIREHDHRYYLEADPLIPDETYDRLFTRLQELENEFD-- 81 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK--DD 123 N P ++GGE L V H P S++ + +R+F R+ + + D Sbjct: 82 --LPTQNSPTRRVGGEPLDELATVEHVAPMRSIDNATEADAVREFDGRVRKGLDAEGFDS 139 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 +++ + EPK DG + + YE G++V AA RGDG +G+DV+ +R I ++P L + P Sbjct: 140 DAVEYVCEPKFDGLSVEVIYEDGEYVRAATRGDGTAGDDVTEQVRTIRSVPGKLRGDPPS 199 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NFFVH 241 + VRGE Y+ ++ F A N+ ++ G +P+ANPRNAA+G LR+L+P+ + FF Sbjct: 200 RLAVRGEAYMPRDAFKAYNEALMERGEEPFANPRNAAAGTLRQLDPSVVAERPLDIFFFD 259 Query: 242 GLGKTS------EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295 LG + +E G N V + + G + Y + + + R L Sbjct: 260 VLGWENDAEGDSPNRPATHWEEFDTFDAFGLRRANRVERVDDIEGALDYRDRLMADREDL 319 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 + IDG+V VD+ + ++ LG AR+PRW ++KF + A+T + I +Q+GRTG LTPV Sbjct: 320 NFAIDGVVIAVDDRANREALGATARAPRWAFAYKFPPRTATTIVEGITVQVGRTGRLTPV 379 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 A L+P+++GG ++ ATLHN I+ L + VGD V + RAG+VIP V + Sbjct: 380 AELDPIDVGGVTVSRATLHNPAEIEAL-----------GVNVGDCVRIYRAGDVIPYVPE 428 Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475 ++ + FP CPIC + V + CTGGL C AQ ++H+ Sbjct: 429 VVEKR---SEGTYVFPETCPICDAPV--------ERDGPLAFCTGGLVCPAQLERAVEHW 477 Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 RDA +IEGLG +++ + A + D++ L + + G+G+ S Sbjct: 478 ARRDALDIEGLGPERVQQLRE----AGLVESLPDLYDLAVDD------LAALEGWGETSA 527 Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 NL + R+ L+ F+ LGI VGA AR+LA ++ D Sbjct: 528 ENLIAELAATRDPPLDDFLAGLGIPDVGATTARALAAHFGDLDAILDA----------DE 577 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655 +L V VG +A++I F N N A++ L + + ++ VFT Sbjct: 578 DALRAVDDVGPEVAESIRTFLDNAENRVAIDGLRERGVDPESVDVETGD-ALDGLTFVFT 636 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQF 714 G+L R +AQ +V GA ++ +S TD ++ G++PG SK + A GV +++EE+F Sbjct: 637 GSLST-TRGEAQAHVEAHGADATSSVSGNTDYLVAGESPGRSKRDDADAEGVPVVDEEEF 695 Query: 715 LFLLQQYNTTLRIHD 729 LL + + Sbjct: 696 AGLLAERGVAWPPEE 710 >gi|291542878|emb|CBL15988.1| DNA ligase, NAD-dependent [Ruminococcus bromii L2-63] Length = 661 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 221/719 (30%), Positives = 347/719 (48%), Gaps = 73/719 (10%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + A+ L +++ YH++ YY +P I D +YD L R + I FP L P Sbjct: 1 MDFITAQNRAQELTKQLEYHNNLYYNQDEPEISDYDYDMLMRELENIEKEFPSLK---SP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P N++GG VTH + SL ++ E+LR+F R+ ++ + +E Sbjct: 58 MSPTNRVGGNAGEKFSPVTHEVVMESLHDSFSHEELREFDARVRETV-----PNVRYVVE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK DG ++ YE G FV + RGDG GEDV+ + I ++P+ + PE +EVRGEV Sbjct: 113 PKFDGLSVSCEYENGVFVRGSTRGDGSVGEDVTENLMTIKSLPKRIPNA-PEYLEVRGEV 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+S N F AL K + NPRNAA+G LR+ N R L+ FV + + + Sbjct: 172 YMSFNSFDALTRRQEENEEKTFKNPRNAAAGSLRQKNAKITAQRSLDIFVFNIQQIRGMT 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + LGFP + ++ + ++R L Y IDG V KVD F+ Sbjct: 232 IESHIQGLDYLTELGFPTAFYS-VYDNVDEVIEEIERIGNMRGELDYAIDGAVVKVDSFA 290 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ LG A+ P+W ++K+ ++ T+LL+I+I +GRTG+LTPV EPV + G ++ Sbjct: 291 SRRLLGSTAKYPKWAEAYKYPPEEKPTKLLNIEINVGRTGVLTPVGNFEPVLLAGTTVSR 350 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN+D+I + I VGD V++++AGE+IP+V+ + + +A PF F Sbjct: 351 ATLHNKDFID-----------EKGICVGDTVIIRKAGEIIPEVLSVKEHA--ENAVPFEF 397 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP C + V D AA RCT C AQ L HFVSRDA +I+GLG Sbjct: 398 PSVCPSCGNPVTHDEGE------AAIRCTNT-DCPAQLTRHLIHFVSRDAMDIDGLGPAI 450 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L+ ++ PAD++ L+ +S + + S NL SI K + L Sbjct: 451 LEQLSDE----GLVKSPADLYRLKAEDISS------LERKAEKSAQNLISSIEKSKENEL 500 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R +F+LGIR++G + A+ + + + + + ++ G ++A+ Sbjct: 501 FRLVFALGIRNIGLKAAKIICENFATIDDIMSA----------KAEDFEKIDGFGAVMAE 550 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ ++ + L KN E K V TGTL + R +A + + Sbjct: 551 SLENYFSLDGTKELIADLKSLGLKMKPSQPKNTGGLFEGKTFVLTGTLPTMTRSEASKLI 610 Query: 671 TQLGA-----------VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 Q G ++ G++ GSKL KAQ LGV I++EE+ +L Sbjct: 611 EQNGGKTSSSVSKKTS-----------YVLAGEDAGSKLTKAQTLGVTIISEEELKEML 658 >gi|125623311|ref|YP_001031794.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. cremoris MG1363] gi|166215816|sp|A2RIF3|DNLJ_LACLM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|124492119|emb|CAL97048.1| DNA ligase [Lactococcus lactis subsp. cremoris MG1363] gi|300070060|gb|ADJ59460.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. cremoris NZ9000] Length = 686 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 217/733 (29%), Positives = 347/733 (47%), Gaps = 81/733 (11%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++ L +++ YY +P + DSEYD L + P L R+ + P + Sbjct: 3 IESKIKELTDQLNQFAYEYYTLDEPSVEDSEYDHLYHELVKLEQENPQLVRA---DSPTH 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 + GG + K H SL +++ E+L + R+ + + + + E KIDG Sbjct: 60 RTGGVILDGFVKFRHPYNLYSLGDVFSREELALWEERVRK-----EIVNPEYICELKIDG 114 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 +++ YE G V AA RGDG +GE+++ ++ I +P L I I VRGE Y+ + Sbjct: 115 LSLSLYYENGLLVTAATRGDGTTGENITENVKRIKDVPLKLKEAI--DIVVRGEAYLPRQ 172 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 +F LN E G P+ANPRNAA+G LR+L+ + + S Q E Sbjct: 173 NFAKLNAERELEGAAPFANPRNAAAGTLRQLDTKIV-AKRGLATFLYQEASPATNDTQEE 231 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L+ LGF VN + A I + E +R LPYDIDG+V KV+ + Q++LG Sbjct: 232 VLEYFEELGFQVNPERKFARNLDEIWEFIEEATRLRDELPYDIDGVVIKVNNLAEQEELG 291 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++PRW I++KF +QA T +L +D +GRTG++TP A + V + + ATLHN Sbjct: 292 FTVKAPRWAIAYKFPAEQAETEILSVDWTVGRTGVVTPTANMTAVLLAQTTVARATLHNV 351 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP------------- 423 DYI+ +DIR D+V++ +AG++IPKV +++ +R P Sbjct: 352 DYIQ-----------EKDIRNHDKVMIYKAGDIIPKVGKVLLEKRKPARHLRKTHRANKY 400 Query: 424 -------------------DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLAC 464 + P+ CP C S ++ + A RC L C Sbjct: 401 VWTRFGRRSVEKGLVFSKREDNRVKIPTQCPECDSDLIHFEDE------VALRCVNPL-C 453 Query: 465 SAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI 524 AQ E+L HF SRDA NI GLG + F + + AD++ L + Sbjct: 454 PAQIREKLIHFASRDAMNIVGLGPSVISQLFDKK----LVTDVADLYQLTVEDLLT---- 505 Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 + + + +I + R S E+ +F LGIRHVG + A+ L + + + + +Q Sbjct: 506 --LDKVKETLAQKIVSAIAQSRENSAEKLLFGLGIRHVGGKAAKLLLERFANLRALSQAS 563 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 + +P +G +IA A+V +++ ++ L NV Sbjct: 564 E----------EEISEIPSLGGVIATAVVSYFETAGAKTLLDELENAGLNFAYLGAVNVE 613 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 + K +V TG L ++R +A+E + LGA VS +S+KTD+++ G+ GSKL KAQ L Sbjct: 614 GILSGKTVVLTGKLTTLKRTEAKEKLEALGANVSGSVSKKTDLVVAGEEAGSKLTKAQDL 673 Query: 705 GVKIMNEEQFLFL 717 G++I +E+ L L Sbjct: 674 GIEIWSEQDLLDL 686 >gi|91762853|ref|ZP_01264818.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1002] gi|91718655|gb|EAS85305.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1002] Length = 676 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 255/715 (35%), Positives = 398/715 (55%), Gaps = 43/715 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + E H+ YY +KPI+ D E+D LK+ + + L Sbjct: 1 MNDKDLEIEYLKKIDLFQTHNKHYYDKNKPIVSDQEFDLLKKDIIDLESKYKFLK---SE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P IG + + + K+ H +P LSL +N EDL+ F +I F KD N+I ++ E Sbjct: 58 YSPTKSIGFKPSKNFQKIKHKVPMLSLGNAFNEEDLKNFEKKIINFLSLKDVNTIEYSAE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PKIDG ++ Y GK RGDG+ GED++ ++ I IP + N P+ I++RGE Sbjct: 118 PKIDGISASLIYINGKLTKGLSRGDGNEGEDITQNLKTIKDIPLEITKSNFPKEIDIRGE 177 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEI 249 V+I NDF + + +ANPRNAASG LR+ N + F + G ++ Sbjct: 178 VFIENNDFKKI--------KDKFANPRNAASGSLRQKNSLITEKIPLKFIAYTYGYEKKM 229 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 K Q L+ ++ GF N ++ ++ + E++ R L +DIDG+VYKV++F Sbjct: 230 NIKNQTSFLENLKLWGFKTNPFNKKIIGVKNLMLNHKELEEKRKELAFDIDGIVYKVNDF 289 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQK+LG A +PRW I+HKF+ + + +++I+IQIGRTG LTPVA+++PVNIGG +++ Sbjct: 290 DLQKRLGFAANAPRWAIAHKFSANSSISEIMNIEIQIGRTGALTPVAKIKPVNIGGVIVS 349 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNED I +DIRVGD V V+RAG+VIP VV + + +R +++ F Sbjct: 350 NATLHNEDEI-----------VRKDIRVGDTVTVERAGDVIPHVVSVDLKKRKQNSKKFI 398 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP C S+ ++D N T + A RC + G C +ER+KHFVS+DAFNI+G GK Sbjct: 399 FPLKCPSCGSKTIKDYNETTKRQDAVRRCASEGFECEKIAIERIKHFVSKDAFNIDGFGK 458 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ F+ + +R+P DIF L + KIE + G+G +SV NL SI K++NI Sbjct: 459 KIVENFWNLK----LVRLPQDIFKL------NYNKIEELEGWGKLSVANLRFSIEKKKNI 508 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SLERFI+SLGIRH+G E A+ +A++ + NF + ++ SL + +G Sbjct: 509 SLERFIYSLGIRHIGQENAKLIARHLKTASNFFRLS------GENNIESLSNIDGIGITQ 562 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 Q+I +F+ N N+ + L K + N + ++NK + TG L I R +A+ Sbjct: 563 IQSIKKFFLNKTNLKVLSELEKNLLIKDVILINN-NGLLKNKTFMLTGKLNGISRAEAKS 621 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + Q + + +++K D +I GD P K+ A++ +KI+N+ ++L +L + Sbjct: 622 LIEQNSGKIISNVNKKLDYLIAGDKPTLKKINTAKEWNIKIINQTEWLKMLNKSG 676 >gi|309808880|ref|ZP_07702761.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 01V1-a] gi|308167878|gb|EFO70015.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 01V1-a] Length = 672 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 214/718 (29%), Positives = 357/718 (49%), Gaps = 51/718 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + LS+ QA+ E+ L +++ YY P++ D+ YD + ++ + +P L Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 DP+ ++GG + L KV H P LS+ +++ ++L +F RI + + + + Sbjct: 59 -DPDSITQRVGGNIKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVG----HVVDY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ Y+ GK V A+ RG+GH GEDV+A I IP+ L I IEVR Sbjct: 114 NVELKIDGLSLSLEYKVGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKI--DIEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+ K F LN E G +ANPRNAA+G LR+L+ + Sbjct: 172 GECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ + M LGF N + ++ + + + ++ + RS L Y IDG+V KVD+ Sbjct: 232 ETITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ +LG + PRW I++KF ++ T + +I +GRTG++TP A ++PVN+ G ++ Sbjct: 292 LALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A LHN D ++ +DIR+GD VL+ +AG++IP++ +++N+R + P+ Sbjct: 352 SRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C +V + A RC + C AQ E + HF SR A NI GLG Sbjct: 401 EIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + AD++ L Q + F D S+ NL ++I + Sbjct: 454 KIVRQLI----ALHLVNDIADLYFLSAAQL------AKLDHFKDKSIQNLLNAIENSKQN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E +F LGI HVGA+ AR +AK + + L+++ +G I Sbjct: 504 SVELLLFGLGIDHVGAKAARLIAKKFHDLNTIREC----------SIADLMQIDTIGQTI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 A+++V++++ ++ L + + + K +V TG L R Sbjct: 554 AESMVKYFEQQSVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKLAHYSRA 613 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + +T LGA V + +S+ TD +I GD GSK +AQQL + ++ E++ + L Sbjct: 614 DLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVIAKLNSQK 671 >gi|241896133|ref|ZP_04783429.1| NAD-dependent DNA ligase [Weissella paramesenteroides ATCC 33313] gi|241870647|gb|EER74398.1| NAD-dependent DNA ligase [Weissella paramesenteroides ATCC 33313] Length = 675 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 218/716 (30%), Positives = 374/716 (52%), Gaps = 52/716 (7%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 + + +A +++ L+ ++ YY+ P + D+EYD + +R + AFP+L Sbjct: 1 MTEVALTDPTEAAQQMEKLQLQLQQWAKEYYENDSPTVEDAEYDKVYKRLQELEAAFPEL 60 Query: 66 ARSEDPNGPLNKIGG-EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 +P+ ++GG + L KV H +P LSL ++++++L ++ + + + Sbjct: 61 V---NPDSITQQVGGHKTKSELPKVEHDVPMLSLGDVFSMDELTNWMVNTQKSFTE---- 113 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 + + E KIDG I++ Y++G V A+ RGDG+ GEDV++ I+ + IP+ LS + Sbjct: 114 ELIYNAELKIDGLAISLVYQEGLLVQASTRGDGNVGEDVTSNIKYVDDIPKKLSEPLS-- 171 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP--TDITRYLNFFVHG 242 IEVRGE+Y+ K F++LN+ G +ANPRNAA+G LR+L+P T + F Sbjct: 172 IEVRGEIYMPKEAFVSLNESRERDGLPTFANPRNAAAGSLRQLDPLITKKRKLSAFMYQV 231 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + + K Q E+L ++ LG P NN + + +Y + R +L Y IDG+ Sbjct: 232 VDAPRSLNIKTQSELLIRLSQLGLPANNTNAVVTSTTDVENYIVSQTNHRDSLSYGIDGI 291 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KV+ S ++LG + P+W I++KF ++A T + I+ +GRTG +TP A + PV Sbjct: 292 VIKVNNLSFHEELGNTVKVPKWAIAYKFPPEEAETIIQGIEWTVGRTGAVTPTAVMNPVQ 351 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G ++ A+LHN DY++ +DIR+GD V + +AG++IP+V +I+ R Sbjct: 352 LAGTTVSRASLHNADYLQ-----------AKDIRIGDTVTLHKAGDIIPEVGKVIIERRP 400 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 D+ + P CP C +V A RC AC AQ E L HF SR+A N Sbjct: 401 EDSVLYELPKECPACHQSLVHVDGE------VALRCINP-ACPAQVQESLTHFASRNAMN 453 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+GLG + + I D++ LQ + + FGD + NL ++I Sbjct: 454 IDGLGPKIISQLLAH----GLITKVTDLYRLQYDDLIN------LDKFGDTAANNLLNAI 503 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 N +N S+ER +F LGIR+VGA+ A+++A + + + A+ + ++P Sbjct: 504 NLSKNNSVERLLFGLGIRNVGAKAAKTIATKFGNLKAIAEAT----------ADDIAKLP 553 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSE-IENKKLVFTGTLQK 660 +G I ++ +++ + + ++ +V+ + + KK+V TG+L Sbjct: 554 GMGLTIGDSVAQYFATEQAQQLLNDFIELKVNTEFTSQTAVIDNPMFSGKKIVLTGSLSL 613 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 R A ++ GA+V++ +S+KTD++I G+N GSKL KAQ L ++I +E+Q Sbjct: 614 FSRRDASAWLESQGAIVASSVSKKTDLLIAGENAGSKLTKAQDLNIEIWSEKQLRD 669 >gi|254427631|ref|ZP_05041338.1| DNA ligase, NAD-dependent [Alcanivorax sp. DG881] gi|196193800|gb|EDX88759.1| DNA ligase, NAD-dependent [Alcanivorax sp. DG881] Length = 776 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 246/804 (30%), Positives = 379/804 (47%), Gaps = 123/804 (15%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + ++ L +++ YY P + D+EYD R + +PDL + Sbjct: 1 MPNPDIIQKAQHLRDQLNDWSYRYYVQDDPAVPDAEYDRAFRELKDLEAQYPDLITA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G + +V H +P LSL+ ++ +DLR F RI D ++ + E Sbjct: 58 DSPTQRVGDVPLDAFEQVQHEVPMLSLDNAFDDDDLRAFDKRIRERLG--VDETVDYVAE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190 PK+DG I++ Y G+ V AA RGDG +GE+++ R I ++P L + P +EVRGE Sbjct: 116 PKLDGLAISLLYLDGQLVRAATRGDGQTGENITVNARTIRSVPLTLRGSQVPSRLEVRGE 175 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK-TSE 248 V + F ALN A +K +ANPRNAA+G LR+L+ +R L F+ + + + Sbjct: 176 VVMPHAGFAALNARQEAAEQKVFANPRNAAAGSLRQLDSRITASRPLEFYAYSMAQLEGV 235 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 +ML+ +R G VN VR ++++Y + R L YDIDG+VYKVD Sbjct: 236 PEPATHADMLEALRSWGLRVNPEVRVCAGVDALLAFYQGILEKRDHLDYDIDGVVYKVDR 295 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F Q+ LG +R+PRW I+HKF ++ T L +D Q+GRTG LTPVARLEPV++GG ++ Sbjct: 296 FDWQQDLGFVSRAPRWAIAHKFPAQEELTVLNGVDWQVGRTGALTPVARLEPVHVGGVIV 355 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I+ L DIR+GD V+V RAG+VIPKVV + R DA+ Sbjct: 356 SNATLHNIDEIQRL-----------DIRIGDTVVVYRAGDVIPKVVRALPERRPADARDI 404 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 + P CP+C S ++R G RCTGGL C AQQ E +KHF SR A +I+GLG Sbjct: 405 ALPPSCPVCGSDILR------GDDQVVARCTGGLICGAQQREAIKHFASRRAMDIDGLGD 458 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + +D E I AD++ L+ Q + G+ S NL ++ + + Sbjct: 459 KLVDALVDQE----LIATVADLYRLKAEQVAG------LERMGEKSADNLIAALETSKTV 508 Query: 549 SLERFIFSLGI--------------------------------RHVGAEIARSLAKYYLS 576 L RF+F+LGI VG E+A+++ ++ Sbjct: 509 GLGRFLFALGILQIGEETAKNLADCFGDLEGIRRAPLLLLLAVPDVGMEVAKAIGAFFAE 568 Query: 577 ------YQNFAQEINNIIAH--------NNDDWLSLI--------RVPLVGDI------- 607 E N A N+ L+ + +GD Sbjct: 569 ADNEVVIDGLLAEGVNPQASGVPSAAFVNSLTLAQLLKSAKRLGMNLEGIGDKSLETLGG 628 Query: 608 ----IAQ----------------------AIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 +A+ + ++ +V+ R Sbjct: 629 HFRTVAELSAAAAEGAGAEPKGVRSGVMTQLARALAENGWQARLQDAEDQVAALAARAPV 688 Query: 642 NVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700 S +E + V TGTL+++ R +A++ + QLGA V+ +S+ T ++ G + GSKL K Sbjct: 689 QAESRPLEGQTWVLTGTLEQLTRDQAKQALQQLGAKVAGSVSKNTSTVVAGASAGSKLAK 748 Query: 701 AQQLGVKIMNEEQFLFLLQQYNTT 724 A+ LGV++ +E L +L Q+ Sbjct: 749 AESLGVEVCDEAALLSMLTQHGID 772 >gi|325913348|ref|ZP_08175716.1| DNA ligase (NAD+) [Lactobacillus iners UPII 60-B] gi|325477451|gb|EGC80595.1| DNA ligase (NAD+) [Lactobacillus iners UPII 60-B] Length = 672 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 213/718 (29%), Positives = 355/718 (49%), Gaps = 51/718 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + LS+ QA+ E+ L +++ YY P++ D+ YD + ++ + +P L Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLL-- 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 DP+ ++GG L KV H P LS+ +++ ++L +F RI + + + + Sbjct: 59 -DPDSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVG----HVVDY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ Y+ GK V A+ RG+G GEDV+A I IP+ L I IEVR Sbjct: 114 NVELKIDGLSLSLEYKAGKLVRASTRGNGRIGEDVTANAMHIEDIPKFLPQKI--DIEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+ K F LN E G +ANPRNAA+G LR+L+ + Sbjct: 172 GECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ + M LGF N + ++ + + + ++ + RS L Y IDG+V KVD+ Sbjct: 232 ETITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ +LG + PRW I++KF ++ T + +I +GRTG++TP A ++PVN+ G ++ Sbjct: 292 LALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A LHN D ++ +DIR+GD VL+ +AG++IP++ +++N+R + P+ Sbjct: 352 SRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C +V + A RC + C AQ E + HF SR A NI GLG Sbjct: 401 EIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + AD++ L Q + F D S+ NL ++I + Sbjct: 454 KIVRQLI----ALHLVNDIADLYFLSAAQL------AKLDHFKDKSIQNLLNAIENSKQN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E +F LGI HVGA+ AR +AK + + L+++ +G I Sbjct: 504 SVELLLFGLGIDHVGAKAARLIAKKFHDLNTIREC----------SIADLMQIDTIGQTI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 A+++V++++ ++ L + + + K +V TG L R Sbjct: 554 AESMVKYFEQQSVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKLAHYSRA 613 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + +T LGA V + +S+ TD +I GD GSK +AQQL + ++ E++ + L Sbjct: 614 DLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVIAKLNSQK 671 >gi|309804542|ref|ZP_07698607.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 09V1-c] gi|309809394|ref|ZP_07703256.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 2503V10-D] gi|312873385|ref|ZP_07733436.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2052A-d] gi|308165934|gb|EFO68152.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 09V1-c] gi|308170305|gb|EFO72336.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 2503V10-D] gi|311091069|gb|EFQ49462.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2052A-d] Length = 672 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 213/718 (29%), Positives = 356/718 (49%), Gaps = 51/718 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + LS+ QA+ E+ L +++ YY P++ D+ YD + ++ + +P L Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 DP+ ++GG L KV H P LS+ +++ ++L +F RI + + + + Sbjct: 59 -DPDSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVG----HVVDY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ Y+ GK V A+ RG+GH GEDV+A I IP+ L I IEVR Sbjct: 114 NVELKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKI--DIEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+ K F LN E G +ANPRNAA+G LR+L+ + Sbjct: 172 GECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ + M LGF N + ++ + + + ++ + RS L Y IDG+V KVD+ Sbjct: 232 ETITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ +LG + PRW I++KF ++ T + +I +GRTG++TP A ++PVN+ G ++ Sbjct: 292 LALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A LHN D ++ +DIR+GD VL+ +AG++IP++ +++N+R + P+ Sbjct: 352 SRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C +V + A RC + C AQ E + HF SR A NI GLG Sbjct: 401 EIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + AD++ L Q + F D S+ NL ++I + Sbjct: 454 KIVRQLI----ALHLVNDIADLYFLSAAQL------AKLDHFKDKSIQNLLNAIENSKQN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E +F LGI HVGA+ AR +A+ + + L+++ +G I Sbjct: 504 SVELLLFGLGIDHVGAKAARLIAQKFHDLNTIREC----------SIADLMQIDTIGQTI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 A+++V++++ ++ L + + + K +V TG L R Sbjct: 554 AESMVKYFEQQSVKELMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKLAHYSRA 613 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + +T LGA V + +S+ TD +I GD GSK +AQQL + ++ E++ + L Sbjct: 614 DLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVIAKLNSQK 671 >gi|256372325|ref|YP_003110149.1| DNA ligase, NAD-dependent [Acidimicrobium ferrooxidans DSM 10331] gi|256008909|gb|ACU54476.1| DNA ligase, NAD-dependent [Acidimicrobium ferrooxidans DSM 10331] Length = 664 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 218/715 (30%), Positives = 348/715 (48%), Gaps = 55/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E A +++L I + YY PI+ D E+D L A+ A P+L P Sbjct: 1 MT-ESAAARVAALRSLIQRASEAYYVADDPIMSDDEFDGLVLELRALEAAHPEL---RSP 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G S V H P LSL+ +++ ++L ++ R R + E Sbjct: 57 DSPTERVGAPPGSSFAPVRHRTPMLSLDNVFDADELDAWVERTRRGLG----HDPALFFE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190 KIDG +++ Y G+ AA RGDG GEDV+A + IPR L P ++EVRGE Sbjct: 113 LKIDGLALSLTYVDGRLAQAATRGDGEVGEDVTANALVVDAIPRRLKGVTGPGLVEVRGE 172 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 +++ ++ F ALN+ +P+ANPRNAA+G LR+ +P R L+FF + L + Sbjct: 173 LFLPRSAFRALNER----VERPFANPRNAAAGSLRQKDPALTRDRGLSFFAYQLEEG--P 226 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +E LQ + +GF V + + R L YDIDG V KVD Sbjct: 227 SFDYHHEALQWLGEVGFQVEAHATPVGL-DELADKLAWLAEARDGLDYDIDGAVIKVDRL 285 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + +LG +PRWMI++KF ++ TRL+ I++ +G++G +TP A L+PV +GG+ ++ Sbjct: 286 EDRVRLGTTTHAPRWMIAYKFPAEERPTRLVGIEVSVGKSGKVTPFAVLDPVRVGGSTVS 345 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN D I L D+RVGD V+V+RAGEVIP+VV ++ R DA P+ Sbjct: 346 RATLHNADQIARL-----------DVRVGDTVIVRRAGEVIPEVVRPVLELRPDDAVPWV 394 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C + +VRD RC C Q ++RL HF SRDA +I+GLG+Q Sbjct: 395 FPTTCPVCHTPLVRDRGE------VDWRCPNRR-CPEQLVQRLIHFASRDAMDIDGLGEQ 447 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + + A + +P D++ L + G S+ L I R+ Sbjct: 448 RARQLVE----AGLVVVPPDLYRLTDDDL------ARLPGVRHRSIERLRAGIEASRSRP 497 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R IF+L I +VG + +A S L RV +G ++A Sbjct: 498 LGRVIFALAIDNVGQHVGMLVADVVGSLSGLRTVTE----------DELCRVEGIGPVVA 547 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++V F + ++ L + + + +E V TGT+ I R + Sbjct: 548 ASVVAFRDSDLGREILDKLERAGVGASADRPRAAGGPLEGLSFVLTGTVPGIGRAELAAL 607 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 + + G V +S++T ++ G +PGSKL++A+ G+ +++ + L+ + + Sbjct: 608 IEEHGGQVRTSVSQRTSYVVAGASPGSKLDEARARGIPVIDLDGLRELIDRRGGS 662 >gi|58617448|ref|YP_196647.1| DNA ligase [Ehrlichia ruminantium str. Gardel] gi|75356732|sp|Q5FG20|DNLJ_EHRRG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|58417060|emb|CAI28173.1| DNA ligase [Ehrlichia ruminantium str. Gardel] Length = 674 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 265/709 (37%), Positives = 403/709 (56%), Gaps = 43/709 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 E+A+ L L ++I YHD YY P I D+EYD L + I FP L N Sbjct: 3 DQEEAKLILDKLNEKIRYHDLLYYTQDSPEISDAEYDDLCHQRSIILEKFPSL------N 56 Query: 73 GPLNK-IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 IGG+ + KV H+ LSL+ +N +D+ KF+ R + K++ S+ F+ E Sbjct: 57 SYYQDYIGGDPDSRFSKVKHNERMLSLDNAFNKQDVEKFMVRTRKLLDMKENESLCFSCE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +I Y+ GK A+ RG+G+ GE+++ ++ I +P + P+ +EVRGEV Sbjct: 117 LKIDGLSFSIIYKNGKLFQASTRGNGYFGENITNNVKTIENLPHTIQNA-PDFLEVRGEV 175 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 YI +NDF + K +ANPRNAA+G +R+L+PT R L + ++ + ++ + Sbjct: 176 YIDRNDF-----IQLNNEGKNFANPRNAAAGSIRQLDPTITAQRKLKYCMYTIVNSNCL- 229 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q E L + GF N + F +++YN+M + RS + YDIDG++YK++ Sbjct: 230 --TQTESLNLLNSWGFCTNEHTISTDNFEEAINFYNKMYNNRSNISYDIDGIIYKINNIK 287 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ LG ++SPRW I++KF + T+L I IQ+GRTG+LTP+A L P+NIGG +IT Sbjct: 288 LQHILGTTSKSPRWAIAYKFPAIEGKTKLNKISIQVGRTGVLTPIAELAPINIGGVVITR 347 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN+ I+ +DIR GD V+VKRAG+VIP+VVD+ + R + F+F Sbjct: 348 ASLHNKSEIER-----------KDIREGDYVIVKRAGDVIPQVVDVDKSLRTVELAEFNF 396 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S V + + C GGL C Q LE+++HFVS+DAFNI GLGK+Q Sbjct: 397 PTACPACGSTVYQAQQE------VSIYCMGGLFCHNQILEKIRHFVSKDAFNIIGLGKKQ 450 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L FF++ I DIFTL+ + ++ + G+G+ S+ NL +IN + I+L Sbjct: 451 LLFFYEY----GLITNIIDIFTLEEKINNKNIQLSSFNGWGEKSINNLLSAINNSKVINL 506 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E FIFSLGIR VG IA+ LA +++SY+N+ E+ + N I + VG Sbjct: 507 ENFIFSLGIRFVGKHIAKILANHFISYKNWYTEMLKLAQDVNYT----INIQQVGLKTIN 562 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ F+ N+ + L++ ++ + V S I K +VFTG L + R +A+ Sbjct: 563 SLRTFFTEQHNLNMINNLVEHLTIIDAQSNSYV-SLIHGKTIVFTGELSSMSRSEAKLKS 621 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GA VS+ LS+ TD +I+G+NPGSK +KAQ L ++I++E+ +L +Q Sbjct: 622 ETAGAKVSSSLSKNTDFLIIGNNPGSKYKKAQSLNIQILSEDIWLQYIQ 670 >gi|313904335|ref|ZP_07837713.1| DNA ligase, NAD-dependent [Eubacterium cellulosolvens 6] gi|313470885|gb|EFR66209.1| DNA ligase, NAD-dependent [Eubacterium cellulosolvens 6] Length = 670 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 202/714 (28%), Positives = 343/714 (48%), Gaps = 63/714 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +E + L+++I YH D YY +P I D EYD L PD P+ P KI Sbjct: 4 EEYNRLKEKIDYHMDRYYNLDEPEISDYEYDQLMIALKKAEKEHPDWI---SPDSPSQKI 60 Query: 79 GGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 GG + KVTH +P LS+E +++ E + ++T++ F++E KIDG Sbjct: 61 GGTAKREAGVKVTHRVPMLSIEDVFDKEAVTAWVTKVRDL-----HPDAVFSVETKIDGL 115 Query: 138 MITIRYEK--G----KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 +T+RYEK G K + A RGDG GEDV+ IP + + + +E+RGEV Sbjct: 116 SMTLRYEKVAGTDSMKLMLAETRGDGLVGEDVTLNALVIPDV-QKTLKLPYDYLEIRGEV 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y++ DF N+E +G+K ANPRN A+G LR+L+ + R L FV + F Sbjct: 175 YMTHEDFDRFNEEQERLGKKLAANPRNLAAGTLRQLDASITKERGLRMFVFNVQDAPAEF 234 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + G R +++ +E+ +R+ LPYDIDG V K+++ + Sbjct: 235 LADHSAALDALAACGVQTVYH-RNCVNATEVLAAIDEIAEMRADLPYDIDGAVVKINQTA 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE------PVNIG 364 + ++ I++K+ ++ + +I + +GRTG LT P + Sbjct: 294 YRNDFPAGSKYSSGHIAYKYPPEERVVEMDEIIVNVGRTGKLTFTGSFHDAETGKPARLC 353 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ ATLHN+DYI + I VG + ++GE+IPK+ + Sbjct: 354 GTSVSRATLHNQDYITEMS-----------IGVGGHYRLFKSGEIIPKLNGCVKEP---- 398 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 F P CP+C ++R+ + A RC +C AQ + +F SR+ +I Sbjct: 399 ETVFVAPKTCPVCGHPLIREED------TADIRCVNP-SCPAQLSRTVAYFTSRNCMDIA 451 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG ++ + ++ ADI+ L+ + K + + L D+I+ Sbjct: 452 GLGDTLVEALIRE----GYLKNYADIYKLRAYRDEMVEKGII---GKEKNTDKLLDAIDA 504 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + + R + +LGIR+VG+ A+ L K+Y S + ++ L+++P + Sbjct: 505 SKKQNPARLLTALGIRNVGSSTAKELMKHYASIRELSKAT----------AEELVQLPDI 554 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G A IVEF+ + N+ ++ L K + E+ S ++ +V TGTL + R Sbjct: 555 GSTTAGDIVEFFSDSENLRMIDELEKSGVNMVVEKEEGGSDKLAGMTIVVTGTLPTLGRS 614 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+E + + G + +S+KT +++ G+ GSKL KAQ+LG+K+++E + L ++ Sbjct: 615 EAKELIEKNGGKCTGSVSKKTTLLVAGEAAGSKLTKAQELGIKVISEAELLAMI 668 >gi|312875390|ref|ZP_07735394.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2053A-b] gi|311089053|gb|EFQ47493.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2053A-b] Length = 672 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 214/718 (29%), Positives = 357/718 (49%), Gaps = 51/718 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + LS+ QA+ E+ L +++ YY P++ D+ YD + ++ + +P L Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 DP+ ++GG + L KV H P LS+ +++ ++L +F RI + + + + Sbjct: 59 -DPDSITQRVGGNIKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVG----HVVDY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ Y+ GK V A+ RG+GH GEDV+A I IP+ L I IEVR Sbjct: 114 NVELKIDGLSLSLEYKVGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKI--DIEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+ K F LN E G +ANPRNAA+G LR+L+ + Sbjct: 172 GECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ + M LGF N + ++ + + + ++ + RS L Y IDG+V KVD+ Sbjct: 232 ETITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ +LG + PRW I++KF ++ T + +I +GRTG++TP A ++PVN+ G ++ Sbjct: 292 LALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A LHN D ++ +DIR+GD VL+ +AG++IP++ +++N+R + P+ Sbjct: 352 SRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C +V + A RC + C AQ E + HF SR A NI GLG Sbjct: 401 EIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + AD++ L Q + F D S+ NL ++I + Sbjct: 454 KIVRQLI----ALHLVNDIADLYFLSAAQL------AKLDHFKDKSIQNLLNAIENSKQN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E +F LGI HVGA+ AR +AK + + L+++ +G I Sbjct: 504 SVELLLFGLGIDHVGAKAARLIAKKFHDLNTIREC----------SIADLMQIDTIGQTI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 A+++V++++ ++ L + + + K +V TG L R Sbjct: 554 AESMVKYFEQQSVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKLAHYSRA 613 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + +T LGA V + +S+ TD +I GD GSK +AQQL + ++ E++ + L Sbjct: 614 DLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVVAKLNSQK 671 >gi|307720805|ref|YP_003891945.1| DNA ligase, NAD-dependent [Sulfurimonas autotrophica DSM 16294] gi|306978898|gb|ADN08933.1| DNA ligase, NAD-dependent [Sulfurimonas autotrophica DSM 16294] Length = 650 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 218/704 (30%), Positives = 364/704 (51%), Gaps = 58/704 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++E ++++ YY PI+ D YD L + + A P+ N P + Sbjct: 3 KQEYKQAVEKLNLWAYHYYVLDDPIMTDEVYDKLYKEVEQYEEAHPEDILK---NSPTQR 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++ K H SLE I++ + L+K++ ++YR D+ + F EPK DG Sbjct: 60 VGDVVSEGFAKEPHLSRMWSLEDIFDADGLKKWLEKVYRL-----DSHVTFYCEPKYDGA 114 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G+ RGDG GE ++ ++ I T+P LS+ E+IE+RGEV I K++ Sbjct: 115 SLNLVYENGELQKGITRGDGTVGERITQNVKTIHTVP--LSIEHKELIEIRGEVVIFKDE 172 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N E + G P+ANPRNAA+G LR+L+P+ R L F +G+G + + K + Sbjct: 173 FDKINKERLKKGEPPFANPRNAAAGSLRQLDPSITAARNLVFLPYGVG-VNTLPHKLLND 231 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + + LGF + I + Y MK R + +DG+V KV+E + Q +G Sbjct: 232 KMSYIYELGFRKPPLRAITKGYDEIEAIYERMKEERESYSMMLDGMVVKVNEIAAQIDMG 291 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + PRW +++KF + TRL +I +Q+GRTG++TPVA +EP I GA++ ATLHN Sbjct: 292 YTVKVPRWAVAYKFPAVEKITRLKNIILQVGRTGVVTPVAVVEPTEIEGAVVERATLHNF 351 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ + DIR+GD+V++ R+G+VIPK+V ++ ER P+ CP+ Sbjct: 352 DEIERM-----------DIRIGDQVIILRSGDVIPKIVKVLTQERDGSEVKIERPTHCPV 400 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S ++++ L C A+ + + +F S+ NI+GLG + ++ F Sbjct: 401 CGSELLQEE---------VLIKCQNLKCEARVVNSIIYFASKQCLNIDGLGNKIVEQLFN 451 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 A +R D+F+L + K+ + GF + NL SI + L RFI + Sbjct: 452 ----AGLVRSVLDLFSLTQE------KLLELEGFKEKKAQNLLRSIENAKGCELWRFINA 501 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI H+G ++ +A+ + + + + + L+ + +GD +A++ +EF Sbjct: 502 LGIEHIGEVASKRIAEAFG------------LEYIHQNKEQLLTIEGIGDEMAESYLEFM 549 Query: 617 QNPRNICAVEALLKEVSP-SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + N V L + + P + E+ + + K++V TGT+ + R +E + LGA Sbjct: 550 RV--NEETVVKLQEILRPVEPKKREEAQDNPFKGKRIVLTGTMSE-PRPVIKEKLEDLGA 606 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 VS +S+KTD +I G++ GSK +KA LGVK + E++ LLQ Sbjct: 607 KVSGSVSKKTDYVIYGEDAGSKYDKAISLGVKTLTEDELKELLQ 650 >gi|259501108|ref|ZP_05744010.1| DNA ligase [Lactobacillus iners DSM 13335] gi|302190444|ref|ZP_07266698.1| DNA ligase [Lactobacillus iners AB-1] gi|259167802|gb|EEW52297.1| DNA ligase [Lactobacillus iners DSM 13335] Length = 672 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 213/718 (29%), Positives = 356/718 (49%), Gaps = 51/718 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + LS+ QA+ E+ L +++ YY P++ D+ YD + ++ + +P L Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 DP+ ++GG L KV H P LS+ +++ ++L +F RI + + + + Sbjct: 59 -DPDSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVG----HVVDY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ Y+ GK V A+ RG+GH GEDV+A I IP+ L I IEVR Sbjct: 114 NVELKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKI--DIEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+ K F LN E G +ANPRNAA+G LR+L+ + Sbjct: 172 GECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTYIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ + M LGF N + ++ + + + ++ + RS L Y IDG+V KVD+ Sbjct: 232 ETITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ +LG + PRW I++KF ++ T + +I +GRTG++TP A ++PVN+ G ++ Sbjct: 292 LALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A LHN D ++ +DIR+GD VL+ +AG++IP++ +++N+R + P+ Sbjct: 352 SRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRLQASLPY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C +V + A RC + C AQ E + HF SR A NI GLG Sbjct: 401 EIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + AD++ L Q + F D S+ NL ++I + Sbjct: 454 KIVRQLI----ALHLVNDIADLYFLSAAQL------AKLDHFKDKSIQNLLNAIENSKQN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E +F LGI HVGA+ AR +A+ + + L+++ +G I Sbjct: 504 SVELLLFGLGIDHVGAKAARLIAQKFHDLNTIRKC----------SIADLMQIDTIGQTI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 A+++V++++ ++ L + + + K +V TG L R Sbjct: 554 AESMVKYFEQQSVKELMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKLAHYSRA 613 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + +T LGA V + +S+ TD +I GD GSK +AQQL + ++ E++ + L Sbjct: 614 DLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVIAKLNSQK 671 >gi|325911416|ref|ZP_08173828.1| DNA ligase (NAD+) [Lactobacillus iners UPII 143-D] gi|325476766|gb|EGC79920.1| DNA ligase (NAD+) [Lactobacillus iners UPII 143-D] Length = 672 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 213/718 (29%), Positives = 356/718 (49%), Gaps = 51/718 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + LS+ QA+ E+ L +++ YY P++ D+ YD + ++ + +P L Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 DP+ ++GG L KV H P LS+ +++ ++L +F RI + + + + Sbjct: 59 -DPDSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVG----HVVDY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ Y+ GK V A+ RG+GH GEDV+A I IP+ L I IEVR Sbjct: 114 NVELKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKI--DIEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+ K F LN E G +ANPRNAA+G LR+L+ + Sbjct: 172 GECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ + M LGF N + ++ + + + ++ + RS L Y IDG+V KVD+ Sbjct: 232 ETITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ +LG + PRW I++KF ++ T + +I +GRTG++TP A ++PVN+ G ++ Sbjct: 292 LALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A LHN D ++ +DIR+GD VL+ +AG++IP++ +++N+R + P+ Sbjct: 352 SRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C +V + A RC + C AQ E + HF SR A NI GLG Sbjct: 401 EIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + AD++ L Q + F + S+ NL ++I + Sbjct: 454 KIVRQLI----ALHLVNDIADLYFLSATQL------AKLDHFKEKSIQNLLNAIENSKQN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E +F LGI HVGA+ AR +AK + + L+++ +G I Sbjct: 504 SVELLLFGLGIDHVGAKAARLIAKKFHDLNTIREC----------SIADLMQIDTIGQTI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 A+++V++++ ++ L + + + K +V TG L R Sbjct: 554 AESMVKYFEQQSVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKLAHYSRA 613 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + +T LGA V + +S+ TD +I GD GSK +AQQL + ++ E++ + L Sbjct: 614 DLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVIAKLNSQK 671 >gi|329920507|ref|ZP_08277239.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 1401G] gi|328936183|gb|EGG32636.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 1401G] Length = 672 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 213/718 (29%), Positives = 356/718 (49%), Gaps = 51/718 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + LS+ QA+ E+ L +++ YY P++ D+ YD + ++ + +P L Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 DP+ ++GG L KV H P LS+ +++ ++L +F RI + + + + Sbjct: 59 -DPDSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVG----HVVDY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ Y+ GK V A+ RG+GH GEDV+A I IP+ L I IEVR Sbjct: 114 NVELKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKI--DIEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+ K F LN + G +ANPRNAA+G LR+L+ + Sbjct: 172 GECYMDKATFAKLNFKRDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ + M LGF N + ++ + + + ++ + RS L Y IDG+V KVD+ Sbjct: 232 ETITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ +LG + PRW I++KF ++ T + +I +GRTG++TP A ++PVN+ G ++ Sbjct: 292 LALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A LHN D ++ +DIR+GD VL+ +AG++IP++ +++N+R + P+ Sbjct: 352 SRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C +V + A RC + C AQ E + HF SR A NI GLG Sbjct: 401 EIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + AD++ L Q + F D S+ NL ++I + Sbjct: 454 KIVRQLI----ALHLVNDIADLYFLSAAQL------AKLDHFKDKSIQNLLNAIENSKQN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E +F LGI HVGA+ AR +AK + + L+++ +G I Sbjct: 504 SVELLLFGLGIDHVGAKAARLIAKKFHDLNTIREC----------SIADLMQIDTIGQTI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 A+++V++++ ++ L + + + K +V TG L R Sbjct: 554 AESMVKYFEQQSVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKLAHYSRA 613 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + +T LGA V + +S+ TD +I GD GSK +AQQL + ++ E++ + L Sbjct: 614 DLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVVAKLNSQK 671 >gi|150388772|ref|YP_001318821.1| NAD-dependent DNA ligase LigA [Alkaliphilus metalliredigens QYMF] gi|190359225|sp|A6TLU4|DNLJ_ALKMQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|149948634|gb|ABR47162.1| DNA ligase, NAD-dependent [Alkaliphilus metalliredigens QYMF] Length = 660 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 206/708 (29%), Positives = 353/708 (49%), Gaps = 60/708 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 KE+ L ++++ + YY +PI+ D EYD+L + + + + P ++ Sbjct: 5 KEMEQLVKQLNEYSYKYYVLDQPIVSDKEYDSLYDQLIELEEKTGHVLL----DSPTQRV 60 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GGE H SL+K E+L + RI + + ++ I + +E K DG Sbjct: 61 GGEPLKKFQSHQHVALLWSLDKAKTAEELVAWEQRIKKKL--ESNHEIEYIVEYKFDGLT 118 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + + YE G+ V AA RG+G GE + ++ I IP + + +E++GE ++ + Sbjct: 119 LNLTYENGELVQAATRGNGVVGESIIEQVKTIQAIPLGV--DFNNKMEIQGEGLMAISTL 176 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257 N ++P NPRNAA+G LR L+P R L F + +G + + +M Sbjct: 177 AQYNKTA----KEPLKNPRNAAAGALRNLDPKVTAKRKLGAFCYSIGYYEGMEFETHIQM 232 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 + ++ FPV+N ++ ++ E+++ L Y DG+V KV++ ++ LG Sbjct: 233 IDFLKKNRFPVSNYIKSCKGIDQVIEQIREVEAGMKELDYLTDGIVIKVNDLRTREILGY 292 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 + PRW I++KF ++ +T+L + Q+GRTG LTP A+LEPV I G ++ ATL+N + Sbjct: 293 TQKFPRWAIAYKFEAQEVTTKLEAVLWQVGRTGKLTPAAQLEPVEIAGVTVSRATLNNWE 352 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ + ++VG +V ++R+G+VIP+++ I +A P CP C Sbjct: 353 DIQR-----------KKVKVGCQVWLRRSGDVIPEIMGAIEET-CEEAVEIEKPQHCPAC 400 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +V C L+C Q + R+ H+ SRDA +IEG ++ + F+ Sbjct: 401 DSEIVHR--------GVHIFCPNSLSCKPQLVSRIVHYASRDAMDIEGFSEKTAEQLFE- 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A ++ A ++ L+ + FGD NL D+I + + L+ FI++L Sbjct: 452 ---ALGLKNIAALYELKYEDLI------QLERFGDKKAKNLLDAIEESKTCKLDAFIYAL 502 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI +VG + A LA Y+ + + ++ L+ +P +G I+AQ+IV F++ Sbjct: 503 GIPNVGRKTAADLANYFGDLEKIQRA----------NYDELVVLPDIGGIVAQSIVGFFE 552 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + + I ++E LL E + + S K +V TGTL+ R + Q + + GA V Sbjct: 553 DEKIIKSIELLLAEGIKPQHKMKNRQESIFSGKTVVVTGTLENYGRKEIQTLLEEQGAKV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQL---GVK----IMNEEQFLFLL 718 S +S+ TD +I GDN GSKL+KAQ++ GV+ I++E F LL Sbjct: 613 SGSISKNTDFVIAGDNAGSKLKKAQEILESGVETNLQILDEAAFEALL 660 >gi|289581750|ref|YP_003480216.1| DNA ligase, NAD-dependent [Natrialba magadii ATCC 43099] gi|289531303|gb|ADD05654.1| DNA ligase, NAD-dependent [Natrialba magadii ATCC 43099] Length = 699 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 230/722 (31%), Positives = 359/722 (49%), Gaps = 48/722 (6%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 P E LS ++A +++ L I HD YY + P+I D YD L R + F Sbjct: 21 FEPPEQLSDDEAEQQVEQLRDAIREHDRRYYVENDPLIADRTYDTLFERLQVLESTFD-- 78 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 P+ P +GGE + V H P LS+++ D+R+F R+ R + + Sbjct: 79 --LSHPDSPTRSVGGEPIEAFETVEHEAPMLSIDQSGEEADVREFDERVRR-----EVGA 131 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + + EPK DG + YE G A RGDG G+DV+ R I ++P+ L + P+ + Sbjct: 132 VDYVCEPKFDGVSMEFVYEDGSLQRAVTRGDGREGDDVTRNARTIGSVPQKLHGDYPDFL 191 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245 VRGEV++ K+ F N E I G +P+ANPRNA +G +R+L+P + + Sbjct: 192 AVRGEVFMPKDAFQEHNRERIERGEEPFANPRNATAGTIRQLDPEIVAERPLDVFYFDVL 251 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + E L++ G V + V + ++Y + M R L Y+IDG V K Sbjct: 252 AASELEDSHREELERFPEFGLRVTDHVEIVDDIDDAIAYRDRMLEARDDLNYEIDGTVIK 311 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ +++LG AR R+ ++KF + T + D+ +QIGRTG +TPVA LEPV++GG Sbjct: 312 VDDRDAREELGRTARHDRYAFAYKFPARAEVTPIADVAVQIGRTGRVTPVALLEPVDVGG 371 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD- 424 ++ A+LHN + I + + +GD V V+RAG+VIP V ++I D Sbjct: 372 VTVSRASLHNPEEI-----------AEKTVAIGDTVRVQRAGDVIPYVEEVIEKGADNDP 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + P CP+C S + + CTGGLAC AQ ++++ S ++E Sbjct: 421 ESHYELPDHCPVCDSAI--------ERDGPMAFCTGGLACDAQLRRSIEYYASDGGLDLE 472 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++ + A + AD++ L+ + T+ + G+GD S NL I Sbjct: 473 GLGEKSVRQLVD----AGLVESIADLYELECEELTA------LEGWGDTSAENLLSEIEA 522 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 R L F+ +LGI HVG AR LA+ + +++ + DD +L V V Sbjct: 523 SREPPLADFLSALGIPHVGPTTARELAREFGTFEAVREAAE-------DDPAALEGVDDV 575 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G+ +A+ I EF+ + N AV +L VSP E + E++ VFTG+L + R Sbjct: 576 GETVAETIHEFFASEANAAAVADILAHVSPQESDLE-SGGDELDGLTFVFTGSLADVTRS 634 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 +AQE V GA + +S TD ++VG+NPG +K E A++ V I++E +F LL + Sbjct: 635 EAQETVEAHGANATGSVSGNTDYLVVGENPGATKREDAEENDVPIIDESEFRELLAERGI 694 Query: 724 TL 725 L Sbjct: 695 GL 696 >gi|330984116|gb|EGH82219.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. lachrymans str. M301315] Length = 675 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 232/708 (32%), Positives = 362/708 (51%), Gaps = 48/708 (6%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 + L I + + Y+ +P I D+EY+AL + AI A P + P+ P KIG Sbjct: 6 RAAELRHLIDHANYRYHVLDEPTITDNEYNALFQELLAIEAADP---TQQTPDSPTQKIG 62 Query: 80 GEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + L V H++ LSL+ + D +KF+ I + + + + EPK DG Sbjct: 63 GYVAVGGLQPVKHAVRMLSLDNAFEDADFQKFVKAIE---AEMGIDQLEYVCEPKYDGLA 119 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 +++ Y G A RGDG +GEDV+ +R + IP L + P +EVRGEVY+ ++ F Sbjct: 120 VSLIYIDGVLTRGATRGDGETGEDVTHTVRTVKNIPLKLRGDFPAYVEVRGEVYMPRDGF 179 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEM 257 ALN I G K YANPRNAA+G LR+L+ T +R L F + L I K E Sbjct: 180 EALNQRQIEQGLKTYANPRNAAAGSLRQLDSTVSASRPLEFCAYSLVGAEGIRPKTHIEA 239 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 +Q ++ G P+ G+ F + + E+ R TL YDIDG+V+K+++ LQ++LG Sbjct: 240 MQIIQGWGVPITPGLEVIKGFEAVKLAWEELLKRRPTLNYDIDGIVFKLNDIELQEELGF 299 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 R PRW I+ KF ++ T L+ +D+QIGRTG TPVAR++PV +GG +++N TLHN D Sbjct: 300 VGRVPRWAIAWKFPAEEVDTVLIQVDVQIGRTGAATPVARVKPVQVGGVVVSNVTLHNWD 359 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 +K L D+ GD V+++RAG+VIP+++ + ++R P A+P + P+ CP C Sbjct: 360 EVKRL-----------DLHEGDTVIIRRAGDVIPQMMMSVADKRIPGAKPIAAPTHCPRC 408 Query: 438 QSRVVRDLNPKTGKLV------AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 S ++ D + K V A RC GG+AC AQ+ E + + VSR+ +I+GLGK + Sbjct: 409 NSEILNDTDLVKKKGVYVEVTLAYRRCQGGIACDAQREEMIINAVSREVLDIDGLGKTTV 468 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 ++ +D+F L + G + SV L SI K + L Sbjct: 469 KTLCD----LGILKDLSDVFALTYDDLIK------VEGMAEASVNKLLASIEKSKQTELP 518 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RF+ SLGIR G + LAK +LS+ N + L+ + G A Sbjct: 519 RFLRSLGIREAGETTGKVLAKTFLSFDQIV----------NKSFDDLVALEDFGPKKAGY 568 Query: 612 IVEFYQ-NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +V+ + + + +L +++ S + + V TGTL + R +A+ + Sbjct: 569 LVKAFAPGSPVLEMAQRMLALGVTIAPVEQQDTS--LAGRTYVLTGTLSHMSRGEAKARL 626 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 GA S + +KT +I G + G KL +A LG+ ++ EE + L+ Sbjct: 627 EAKGAKTSGSVGKKTTALIAGADGGGKLTEAANLGIPVLYEEDLMKLI 674 >gi|57239421|ref|YP_180557.1| DNA ligase [Ehrlichia ruminantium str. Welgevonden] gi|58579393|ref|YP_197605.1| DNA ligase [Ehrlichia ruminantium str. Welgevonden] gi|81352823|sp|Q5HAI7|DNLJ_EHRRW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|57161500|emb|CAH58426.1| NAD-dependent DNA ligase [Ehrlichia ruminantium str. Welgevonden] gi|58418019|emb|CAI27223.1| DNA ligase [Ehrlichia ruminantium str. Welgevonden] Length = 674 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 265/709 (37%), Positives = 403/709 (56%), Gaps = 43/709 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 E+A+ L L ++I YHD YY P I D+EYD L + I FP L N Sbjct: 3 DQEEAKLILDKLNEKIRYHDLLYYTQDSPEISDAEYDDLCHQRSIILEKFPSL------N 56 Query: 73 GPLNK-IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 IGG+ + KV H+ LSL+ +N +D+ KF+ R + K++ S+ F+ E Sbjct: 57 SYYQDYIGGDPDSRFSKVKHNERMLSLDNAFNKQDVEKFMVRTRKLLDMKENESLCFSCE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +I Y+ GK A+ RG+G+ GE+++ ++ I +P + P+ +EVRGEV Sbjct: 117 LKIDGLSFSIIYKNGKLFQASTRGNGYFGENITNNVKTIENLPHTIQNA-PDFLEVRGEV 175 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 YI +NDF + K +ANPRNAA+G +R+L+PT R L + ++ + ++ + Sbjct: 176 YIDRNDF-----IQLNNEGKNFANPRNAAAGSIRQLDPTITAQRKLKYCMYTIVNSNCL- 229 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q E L + GF N + F +++YN+M + RS + YDIDG++YK++ Sbjct: 230 --TQTESLNLLNSWGFCTNEHTISTDNFEEAINFYNKMYNNRSNISYDIDGIIYKINNIK 287 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ LG ++SPRW I++KF + T+L I IQ+GRTG+LTP+A L P+NIGG +IT Sbjct: 288 LQHILGTTSKSPRWAIAYKFPAIEGKTKLNKISIQVGRTGVLTPIAELAPINIGGVVITR 347 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN+ I+ +DIR GD V+VKRAG+VIP+VVD+ + R + F+F Sbjct: 348 ASLHNKSEIER-----------KDIREGDYVIVKRAGDVIPQVVDVDKSLRTVELAEFNF 396 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S V + + C GGL C Q LE+++HFVS+DAFNI GLGK+Q Sbjct: 397 PTACPACGSTVYQAQQE------VSIYCMGGLFCHNQILEKIRHFVSKDAFNIIGLGKKQ 450 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L FF++ I DIFTL+ + ++ + G+G+ S+ NL +IN + I+L Sbjct: 451 LLFFYEY----GLITNIIDIFTLEEKINNKNIQLSSFNGWGEKSINNLLSAINNSKVINL 506 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E FIFSLGIR VG IA+ LA +++SY+N+ E+ + N I + VG Sbjct: 507 ENFIFSLGIRFVGKHIAKILANHFISYKNWYTEMLKLAQDVNYT----INIQQVGLKTIN 562 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ F+ N+ + L++ ++ + V S I K +VFTG L + R +A+ Sbjct: 563 SLRTFFIEQHNLNMINNLVEHLTIIDAQSNSYV-SLIHGKTIVFTGELSSMSRSEAKLKS 621 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GA VS+ LS+ TD +I+G+NPGSK +KAQ L ++I++E+ +L +Q Sbjct: 622 ETAGAKVSSSLSKNTDFLIIGNNPGSKYKKAQSLNIQILSEDIWLQYIQ 670 >gi|94986686|ref|YP_594619.1| NAD-dependent DNA ligase [Lawsonia intracellularis PHE/MN1-00] gi|123385090|sp|Q1MRS8|DNLJ_LAWIP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|94730935|emb|CAJ54298.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Lawsonia intracellularis PHE/MN1-00] Length = 682 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 244/718 (33%), Positives = 383/718 (53%), Gaps = 52/718 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P +L ++ ++ + L + I++H+ YY P I DSEYD + + + FP L Sbjct: 6 PQYSLPSKKEKQRVRELRKFINHHNYLYYTLDDPEISDSEYDKAFQELLTLENTFPSLKT 65 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + N P K+G + L + H SL+ +++ ++ F+ R+ + Sbjct: 66 N---NSPTQKVGNNILKKLEEQPHRQRMYSLDNVFSNDEWEGFLKRLANALPEV---PFS 119 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV--LSLNIPEII 185 F +PK+DG + + YEKG+ A RGDG GE V+ +R I IP+ S+N PE++ Sbjct: 120 FWCDPKMDGLALELIYEKGQLTSALTRGDGDIGEVVTEAVRTISNIPKRLKHSINAPELL 179 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 E+RGEV IS+ DF LN E +K +ANPRNAASG +R+L+PT +R L F +G+G Sbjct: 180 EIRGEVVISRADFKKLNKEQEKKKKKLFANPRNAASGSVRQLDPTITASRPLRFLAYGIG 239 Query: 245 --KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + S + +E++ ++ GF + + + SYY +++ R +L Y+IDG+ Sbjct: 240 EIQPSSLKWNTYHELMSYLKEYGFETPPKGKLCISSTEVQSYYTRLQAQRYSLRYEIDGI 299 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V K+D+ Q++LG +R+PR+ I+ KF Q TRLL I IQ+GRTG+LTPVA LEP+N Sbjct: 300 VMKLDDIQSQEKLGYTSRAPRFAIAWKFPATQVQTRLLQIHIQVGRTGVLTPVAELEPIN 359 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 +GGA I+ ATLHNED IK +DIR GD V+V+RAG+VIP++V I+++R Sbjct: 360 VGGATISRATLHNEDEIK-----------NKDIRPGDMVIVQRAGDVIPEIVSPILSDRS 408 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 ++PF FP CP+C +V R N A RC L+C A +L+ + +FVS+ N Sbjct: 409 AKSKPFVFPKICPVCHEKVYRINNE------VAWRCIN-LSCPAIRLQSIIYFVSKSGLN 461 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+G+G++ ++ + I+ PAD+FTL + G ++ Sbjct: 462 IQGIGQRLIELLV----TSGCIKTPADLFTLTTADLLTY------KRMGAKLAAKTIQAL 511 Query: 543 NKRRNISL-ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 + + R I +LGIRHVG + AR LA ++ + L ++ Sbjct: 512 SLAKQTMSLHRLICALGIRHVGEQTARILASSFIDLDALSSA----------SLEDLQQL 561 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 +G +A +I F++N NI + + + P ++ KKL+FTGTL++ Sbjct: 562 SEIGPEVASSIQAFFKNKANIQMINQFREMNIWPIQQVNDTTTKGFFTGKKLLFTGTLER 621 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R + + + GA+V +S K D +I G NPGSKL KAQ+L + I++E FL L Sbjct: 622 -PRAEMKRLAEEAGAIVMTGISHKLDYVIAGKNPGSKLNKAQELHISILDEPTFLQKL 678 >gi|315653834|ref|ZP_07906750.1| NAD-dependent DNA ligase LigA [Lactobacillus iners ATCC 55195] gi|315488530|gb|EFU78176.1| NAD-dependent DNA ligase LigA [Lactobacillus iners ATCC 55195] Length = 672 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 213/718 (29%), Positives = 356/718 (49%), Gaps = 51/718 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + LS+ QA+ E+ L +++ YY P++ D+ YD + ++ + +P L Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 DP+ ++GG L KV H P LS+ +++ ++L +F RI + + + + Sbjct: 59 -DPDSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVG----HVVDY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ Y+ GK V A+ RG+GH GEDV+A I IP+ L I IEVR Sbjct: 114 NVELKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKI--DIEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+ K F LN E G +ANPRNAA+G LR+L+ + Sbjct: 172 GECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ + M LGF N + ++ + + + ++ + RS L Y IDG+V KVD+ Sbjct: 232 ETITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ +LG + PRW I++KF ++ T + +I +GRTG++TP A ++PVN+ G ++ Sbjct: 292 LALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A LHN D ++ +DIR+GD VL+ +AG++IP++ +++N+R + P+ Sbjct: 352 SRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C +V + A RC + C AQ E + HF SR A NI GLG Sbjct: 401 EIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + AD++ L Q + F D S+ NL ++I + Sbjct: 454 KIVRQLI----ALHLVNDIADLYFLSAAQL------AKLDHFKDKSIQNLLNAIENSKQN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E +F LGI HVGA+ AR +A+ + + L+++ +G I Sbjct: 504 SVELLLFGLGIDHVGAKAARLIAQKFHDLNTIREC----------SIADLMQIDTIGQAI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 A+++V++++ ++ L + + + K +V TG L R Sbjct: 554 AESMVKYFEQQSVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKLAHYSRA 613 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + +T LGA V + +S+ TD +I GD GSK +AQQL + ++ E++ + L Sbjct: 614 DLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVIAKLNSQK 671 >gi|120602092|ref|YP_966492.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4] gi|166215378|sp|A1VC99|DNLJ1_DESVV RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 1 gi|120562321|gb|ABM28065.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4] Length = 680 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 235/713 (32%), Positives = 367/713 (51%), Gaps = 55/713 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L E++ H+ YY+ P I D+EYD L R + +P L D P + Sbjct: 8 QSRAAWLRAELARHNRLYYELDTPEISDAEYDTLYRELVNLETLWPALM---DEASPTQR 64 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ L K H++ SL+ ++ ++ FI R+Y + F +PK+DG Sbjct: 65 VGGEVLDRLEKQAHTMRMYSLDNAFSRDEWGAFIQRMYNTLPET---PSSFWCDPKMDGL 121 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKN 196 + + YE G F A RG+G GE V+A +R + +P L N P +EVRGEV I+K Sbjct: 122 ALEVIYENGVFTSALTRGNGAEGEVVTAAMRTVRNLPLRLRGNNVPHRLEVRGEVVIAKA 181 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS----EIFA 251 DF LN AVG K +ANPRNAA+G +R+L+ + R L F +G+G+ Sbjct: 182 DFEQLNARQSAVGGKVFANPRNAAAGSVRQLDTSITAGRPLQFLAYGVGQVVLDGGTAPW 241 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +++ ++R GF R + + +YY + + R +L +IDG+V KVD+ Sbjct: 242 TTHSDLMARLREWGFDSPPEGRLCTSPDEVWAYYEMLGARRESLAIEIDGVVAKVDDTEA 301 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+ LG AR+PRW ++ KF Q TRL DI +Q+GRTG+LTPVA LEPV +GG ++ A Sbjct: 302 QEALGFTARAPRWALALKFPAMQVRTRLQDIRVQVGRTGVLTPVAILEPVRVGGVEVSRA 361 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN I+ + + +GD VLV+RAG+VIP+VV +V +R +PF FP Sbjct: 362 TLHNAYEIE-----------DKGLMLGDMVLVQRAGDVIPEVVRPLVEDRTGGERPFVFP 410 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C S V + + AHRC +C A + + + HFVS+ ++ G G+ + Sbjct: 411 TTCPECGSVVHKPNDE------VAHRCINV-SCPAVRRQSIIHFVSKAGLDVRGFGEHIV 463 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN-ISL 550 A + AD+F+L G S N S++ R +L Sbjct: 464 QQLVD----AGRVTTAADLFSLTTVDLMGF------ERMGPTSAANAIASLDAARTGATL 513 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R I +LGIRHVG + AR+LA +++ + D L+ +P +G +A Sbjct: 514 ARLICALGIRHVGEQTARTLATHFVDLDAMRKA----------DGEKLLHLPDIGPEVAA 563 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKA 666 +I F+ N NI +E L + S+++ KL+FTG+LQ++ R +A Sbjct: 564 SIRCFFDNQSNIELLEQLRDKGLWPRKPDANGPFVREGSQLQGLKLLFTGSLQRMSRSEA 623 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + GA V + +S+ D+I+ G + GSKL++A+ LG+ +++E+ F LL+ Sbjct: 624 KRMAEAAGAHVVSNVSKSLDMIVAGADAGSKLDQAKSLGLHVIDEDAFANLLK 676 >gi|296393986|ref|YP_003658870.1| DNA ligase, NAD-dependent [Segniliparus rotundus DSM 44985] gi|296181133|gb|ADG98039.1| DNA ligase, NAD-dependent [Segniliparus rotundus DSM 44985] Length = 690 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 216/723 (29%), Positives = 341/723 (47%), Gaps = 54/723 (7%) Query: 12 LSIEQA------RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 +S +A + +L EI H YY P + D+++D L R + Sbjct: 1 MSKGKAPARLDPAQRWRALADEIREHQFRYYVLDSPTVTDAQFDVLLRELQELEEE---H 57 Query: 66 ARSEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 + P +GG +V H P LSL+ +++ E L + R ++ Sbjct: 58 PELASADSPTKLVGGAGFTTDFAEVGHIEPMLSLDNVFDEEGLLAWAQRTSNAAER---- 113 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV----LSLN 180 +I F E KIDG +++ YE G+ AA RGDG +GEDV+ +R I +P Sbjct: 114 AIRFECELKIDGLGVSLVYEHGRLARAATRGDGRTGEDVTLNVRTIGDVPHELRLAPGEA 173 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 PE++EVRGEV+ DF ALN ++A G+ P+ANPRN+A+G LR+ NP R L Sbjct: 174 PPELLEVRGEVFFRLKDFEALNASLVAEGKPPFANPRNSAAGSLRQKNPAVTAKRNLTML 233 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 H G TS + +K+R G PV+ +T ++ + + R+ + Y+I Sbjct: 234 CHSFGATSSWKPATRSAAYEKLREWGLPVSEYNTTLDTPEAVLEHIRAWGNRRAEIAYEI 293 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DGLV KV+E L QLG +R+PRW I++K+ ++ T+L DI + +GRTG +TP A ++ Sbjct: 294 DGLVVKVEEMDLYGQLGHTSRAPRWAIAYKYPPQEVQTKLRDIRVNVGRTGRVTPFAFMD 353 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G+ ++ ATLHN ++ + + +GD V++++AG+VIP+V+ + Sbjct: 354 PVLVAGSTVSLATLHNASEVER-----------KGVLIGDTVVLRKAGDVIPEVLGPVAA 402 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R + F P CP C +++ + RC C AQ ER+ H R Sbjct: 403 LRDGTERQFVMPDVCPECGTKLA-----PAKESDVDIRCPNARTCPAQLRERVFHVAGRG 457 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQR----RQQTSTTKIENILGFGDVSV 535 AF+IE LG + K + I D+F L R + G + Sbjct: 458 AFDIEALGYEAATDLLKHQ----VIEDEGDLFDLDEQRLLRTEIFVNTSGKNAGKLSANG 513 Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 L ++ + +N L R + +L IRHVG AR+LA + S D Sbjct: 514 QKLLHNLEQAKNRDLWRVLVALSIRHVGPTAARALATRFGSVDAIFSA----------DE 563 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655 +L V VG IA +++E++Q + + E+ + + +V T Sbjct: 564 QTLAEVDGVGPTIAASVIEWFQVDWHRSILARWAAAGVKMAEEREE-LPQTLAGLTIVVT 622 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 G+L+ R QE + G S +S+KT ++ G+ GSK EKA+QLGV +++E FL Sbjct: 623 GSLEGFTRESVQEAIIARGGKASGSVSKKTSYVVAGEGGGSKREKAEQLGVPVIDEAAFL 682 Query: 716 FLL 718 LL Sbjct: 683 KLL 685 >gi|24379931|ref|NP_721886.1| NAD-dependent DNA ligase LigA [Streptococcus mutans UA159] gi|81451132|sp|Q8DT49|DNLJ_STRMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|24377912|gb|AAN59192.1|AE014986_3 DNA ligase [Streptococcus mutans UA159] Length = 652 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 219/701 (31%), Positives = 345/701 (49%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ ++ L Q ++ + YY P + D+EYD L R + FP+ PN P ++ Sbjct: 2 KERMNELVQLLNQYAREYYTKDNPSVSDAEYDKLYRELVELEKEFPEDIL---PNSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + K H P SL+ ++ E+L F RI + + E KIDG Sbjct: 59 VGDLVLDGFEKYRHEYPLFSLQDAFSREELDAFDRRIK-----AEFPQADYLAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y G+ A RGDG GE+++ ++ + IP L NI + VRGE Y+ K Sbjct: 114 SISLTYVNGRLRVGATRGDGTVGENITENLKRVRDIPLHLPENI--DLTVRGECYLPKAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N E G +ANPRNAA+G LR+L+ + + A Q + Sbjct: 172 FKTINAERRENGETEFANPRNAAAGTLRQLDTKVV-AKRKLATFIYQEAGPTAASSQEAV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+ LGF VN +++ I + ++ R+ L YDIDG+V KV+ +LQ+ LG Sbjct: 231 LESFAKLGFTVNPRHIISSSMDAIWQFIEDVAKERAELAYDIDGVVIKVNSLALQEALGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ + +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKTAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+ ++ N+R P P+ CP C Sbjct: 351 YI-----------AEKDIRIGDIVVVYKAGDIIPAVLHVVENKR-DQQVPLPIPTVCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 QS ++ + A RC C AQ E+L HF SRDA NI GLG ++ F + Sbjct: 399 QSELIHFEDE------VALRCVNPR-CPAQLKEKLIHFASRDAMNIIGLGPAIVEKLFTA 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 E I ADI+ L + G + S T LY +I + S E+ +F L Sbjct: 452 E----LICDVADIYQLTPENLM------QLEGIKEKSATKLYKAIQASKANSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ +R L + + S + A + IA + +G +IA+++ ++ Sbjct: 502 GIRHVGSKASRLLMERFESLEQLAAADFDDIAAID----------GLGIVIAESLKTYFA 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + L + + + +V TG L + R +A+E + LGA Sbjct: 552 TAGAQKLLIELKTAGLNLTYLGKKTASDAALTGMTIVLTGKLANLTRSQAKEKLQSLGAN 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KT ++I G + GSKLEKA+ LG++I +E L Sbjct: 612 VAGSVSKKTSLVIAGSDAGSKLEKAKTLGIEIKDEAWLESL 652 >gi|222474841|ref|YP_002563256.1| DNA ligase (ligA) [Anaplasma marginale str. Florida] gi|255003944|ref|ZP_05278745.1| DNA ligase (ligA) [Anaplasma marginale str. Virginia] gi|254781539|sp|B9KHN8|DNLJ_ANAMF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|222418977|gb|ACM49000.1| DNA ligase (ligA) [Anaplasma marginale str. Florida] Length = 673 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 253/709 (35%), Positives = 396/709 (55%), Gaps = 42/709 (5%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +EQAR+ L+ L ++ +HD Y+ P + D +YD L + + FPD+ + +D Sbjct: 2 LEQARRRLAGLNAKLRHHDMLYHGLDAPEVTDHQYDLLVQEKKRLLDEFPDIRQYDD--- 58 Query: 74 PLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 + +G ++ KV H P LSLE + ++D+ KFITR+ RF + + D+ + + E Sbjct: 59 YADVVGTPKIDSRFPKVQHLEPMLSLENAFTVQDVEKFITRVRRFLELQPDDILELSCEL 118 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG + Y GK A RG+GH GED++ + +P L + PE++EVRGE+Y Sbjct: 119 KMDGMSFSALYHGGKLTRVATRGNGHFGEDITTNAMVLRGLPHQL-DSAPEVLEVRGEIY 177 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + DF L G +ANPRNAA+G +R+LN + + Sbjct: 178 MHHEDFEKLR------GSCNFANPRNAAAGSIRQLNQKIVEERN--LSYVAYSAVNSTFA 229 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E+L+++ GF N V + +++YN + + RS L YDIDG+VYKV+ + Q Sbjct: 230 TQQEILKQLDEWGFHTNKQVLFTDKIEEAIAFYNSVYTTRSALGYDIDGVVYKVNSINFQ 289 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 K LG +SPRW I+HKF +A T+LLDI +Q+GRTG++TP+A LEP+NIGG +++ A+ Sbjct: 290 KLLGATGKSPRWAIAHKFPSTEARTKLLDITVQVGRTGVVTPIAELEPINIGGVMVSRAS 349 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN + I+ +D+R+GD V+VKRAGEVIP+VVD+ R Q F FPS Sbjct: 350 LHNLNEIER-----------KDVRIGDLVIVKRAGEVIPQVVDVDKTLRSSGTQKFVFPS 398 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S++ R+ A RC L+C AQ LER+KHFVSRD NI GLG +Q++ Sbjct: 399 HCPSCGSKLHREPGE------VALRCVAELSCKAQALERVKHFVSRDGLNIMGLGAKQIE 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 FF I ADIF+L+ + E+ G+G+ SV NL +I + L Sbjct: 453 FFCNH----GLIGSIADIFSLEEKLHGINLDTEH--GWGEKSVANLIAAIRNSATVRLSN 506 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LGIR +G A+ +A++Y SY+N+ Q + + ++ +++ +G+ ++ Sbjct: 507 FIFALGIRFIGVGAAKLIAEHYRSYKNWHQAMLALTETHDT-----VQIRGLGEKSISSL 561 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ N+ +E+L +++ SS I K +VFTGTL+ + R +A+ Sbjct: 562 KAFFSVQGNLEVLESLSAKLNILDEASPAQRGSSAISGKTVVFTGTLESMSRTEAKLQAE 621 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA V+ +S T +++ G NPGSK EKA L V++++E+ ++ +++ Sbjct: 622 SLGAKVANSVSANTWLLVAGSNPGSKHEKALSLNVRVIDEQTWVKMVED 670 >gi|188587790|ref|YP_001919828.1| NAD-dependent DNA ligase LigA [Clostridium botulinum E3 str. Alaska E43] gi|254781291|sp|B2UZ23|DNLJ_CLOBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|188498071|gb|ACD51207.1| DNA ligase, NAD-dependent [Clostridium botulinum E3 str. Alaska E43] Length = 667 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 202/716 (28%), Positives = 355/716 (49%), Gaps = 56/716 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + + L + ++ + YY P + D +YD + P Sbjct: 1 MVDKIERIKELVEILNKYSYDYYVLDNPSVSDKDYDKKYDELKLLEKE----TGVVLPYS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ-----KKDDNSIFF 128 P +IG + K TH SL+K ++++++ + R +F +D + + Sbjct: 57 PTLRIGDIVLDGFNKYTHKGKLWSLDKAQSLDEIKDWHNRNIKFVNDMRAQGEDLPDLKY 116 Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 K DG + + Y E+G +A RG+G GE+V+A ++ I +IP L N ++ EV Sbjct: 117 IATKKFDGLTVNLTYNEEGMLEVSATRGNGEIGENVTAQVKTIKSIPLKLQENH-DLFEV 175 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT 246 GE +++ F N P N RN A+G LR LN + R L+ F + +G Sbjct: 176 HGEAIMTQEAFEKYNSSA----DSPLKNLRNGAAGALRNLNVKETARRDLSAFFYDVGYK 231 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 K EM+ ++ G PV++ ++ + I + + ++ IR L YDIDGLV + Sbjct: 232 EGYQFKTYLEMMDFIKEKGLPVDDYLKVCVSIEDIKNEIDYIEKIRFDLNYDIDGLVIAI 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ ++ LG + P+W I++KF ++A+T+L+D++ +GR+G + P A LEPV + G Sbjct: 292 DDIRTRELLGYTVKFPKWAIAYKFEAQEATTKLVDVEWNVGRSGRIGPTAILEPVELAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATL+N D IK + +R+G V ++R+ +VIP+++ + N +++ Sbjct: 352 TVKRATLNNMDDIKR-----------KGVRIGADVFIRRSNDVIPEIMGTLENT-LENSE 399 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ CP C S VV + A + C L+C Q ++ + H+ SRDA NI G Sbjct: 400 EIFPPTECPACGSHVVLN--------GAHYFCENTLSCKPQLVKTIVHYASRDAMNIAGF 451 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 ++ + F+ +I+ +D++ L++ + + FGD NL +++ + Sbjct: 452 SEKTAEQLFEK----LNIKSISDLYKLKKEDLIN------LEKFGDKKAENLLNAVEGSK 501 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 L FI++LGI +VG + A+ + + S + L+ V VGD Sbjct: 502 ECKLYSFIYALGIPNVGVKTAKDIVNKFKSIDGLKNAT----------FEELVSVQDVGD 551 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I+AQ I+EF++ + I ++ LL I K V S ++K +V TGTLQ R + Sbjct: 552 IVAQDIIEFFKEEKVISTIDELLSLGVNPIFDEVKIVESIFKDKTVVATGTLQNYSRTEI 611 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + + LGA VS +S+KTD +I G++ GSKL KA++LGV++++EE+F +L + + Sbjct: 612 KTKLESLGAKVSGSVSKKTDYVIAGESAGSKLTKAEELGVEVISEEEFEKMLGRES 667 >gi|88607345|ref|YP_504763.1| DNA ligase, NAD-dependent [Anaplasma phagocytophilum HZ] gi|123736456|sp|Q2GLI8|DNLJ_ANAPZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|88598408|gb|ABD43878.1| DNA ligase, NAD-dependent [Anaplasma phagocytophilum HZ] Length = 677 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 260/711 (36%), Positives = 399/711 (56%), Gaps = 43/711 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S +R+ L+ L ++ HD Y+++ P I D++YDAL + + FP+L+ D Sbjct: 1 MSDNDSRRRLADLNAQLKLHDVLYHEHDAPEISDAQYDALVQEKRELLEKFPELSAYNDY 60 Query: 72 NGPLNKIGG-EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 G IG ++ L K+ H P LSLE + I+D+ KFI+R+ R + SI Sbjct: 61 EGV---IGALTVDARLPKIAHREPMLSLENSFTIQDVEKFISRVKRSLNMDPEVSITIAC 117 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 EPKIDG YEKG + A RG+GH GED++ + I +P ++ PE++EVRGE Sbjct: 118 EPKIDGLSFAALYEKGSLIRVATRGNGHLGEDITNTAKVIRKLPHKIANA-PEVLEVRGE 176 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +Y+ +DF L D +ANPRNAA+G +R+LNP + Sbjct: 177 IYMHHSDFEKLKDV------CNFANPRNAAAGSIRQLNPKIAEERN--LRYVAYCIVNSA 228 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q +L+++ GF + V A+ +S++ M + RSTL YDIDG+VYKV++ Sbjct: 229 LASQEAILKQLAEWGFCTHTEVLFADNMDDALSFHTRMYNTRSTLGYDIDGIVYKVNDTH 288 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQK LG ++ PRW +HKF +A T+L DI +Q+GRTG++TP+A LEP+NIGG L++ Sbjct: 289 LQKLLGSTSKYPRWATAHKFPSTEAITKLRDISVQVGRTGVITPIAELEPINIGGTLVSR 348 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP--F 428 A+LHN + I +DIR+GD V+VKRAGEVIP+VV + R A P + Sbjct: 349 ASLHNLNEIAR-----------KDIRIGDSVIVKRAGEVIPQVVGVDHTARCNSAVPEEY 397 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FPS CP C S + R A RCT L+C AQ LER+KHFVSRD NI GLG+ Sbjct: 398 VFPSHCPSCGSTLSRAPGE------VAMRCTAELSCQAQVLERVKHFVSRDGLNIVGLGE 451 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 +Q++FF A I ADIF+L+ + E+ G+G+ S+ L ++IN + Sbjct: 452 KQIEFFCN----ASYISNVADIFSLREKISHMNLSAEH--GWGEKSIALLINAINASTTV 505 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L FIF+LGIR +G A+ +A++Y SY + + + ++ + D + +G Sbjct: 506 KLSNFIFALGIRFIGKGAAKLIAEHYRSYSAWVRAMTSLANGEDPD-----NIHGIGLKS 560 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 +++ F+ + N+ ++ L ++++ +S I K +VFTG L+ + R++A + Sbjct: 561 IESLRAFFSSEDNLRVLQTLEEKLNILNEIANTETASPISGKTIVFTGVLEDMSRNEAAK 620 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 Y LGA V ++ KTDI++ G N GSKL+ A++LG+++MNE ++ LL+ Sbjct: 621 YAETLGAKVGNTVTTKTDILVAGSNSGSKLDTARKLGIQVMNESEWKDLLK 671 >gi|242309547|ref|ZP_04808702.1| DNA ligase polydeoxyribonucleotide synthase [Helicobacter pullorum MIT 98-5489] gi|239524118|gb|EEQ63984.1| DNA ligase polydeoxyribonucleotide synthase [Helicobacter pullorum MIT 98-5489] Length = 648 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 226/702 (32%), Positives = 362/702 (51%), Gaps = 59/702 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 + + ++ YY PI D EYD L + P+ + P ++G Sbjct: 5 QYLQAIKTLNLWAKHYYILDDPIASDEEYDTLYHQIKEFEAKNPNQIAK---DSPTQRVG 61 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + S K H SLE I++ ++L+++I R+ + ++ FT++PK DG + Sbjct: 62 DNILESFSKSEHIERMWSLEDIFDTQELQEWINRVSK------GENLLFTIDPKFDGASL 115 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 + YE GK A RGDG GE+V+ + I +IP LS+ + IE+RGE I+KNDF Sbjct: 116 NLLYENGKLQKATTRGDGFIGENVTQNAKTIQSIP--LSIPYTDRIEIRGECVIAKNDFE 173 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN E + G +ANPRNAA+G LR+L+ R L F G+G + +E++ Sbjct: 174 RLNQERLENGESLFANPRNAAAGSLRQLDSKITAKRKLQFIPWGVGFCTIEENSF-FELM 232 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 QK+R GF + + I Y + S R + P +DG+V ++D +LQK LG Sbjct: 233 QKIRSFGFLTSPFSKLCKNLQEIEESYQNLISKRDSYPIMLDGMVIRIDSIALQKNLGFT 292 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++PR+ ++KF + ++LDI +Q+GRTG++TPVA LEPV I GA + ATLHN D Sbjct: 293 IKAPRFACAYKFPAIEKKAKILDITLQVGRTGVVTPVAILEPVMIEGAKVARATLHNFDE 352 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I+ +DI + D V++ R+G+VIPK++ + + R + P+ CPIC Sbjct: 353 IRK-----------KDILINDSVILIRSGDVIPKIIKSLPSLRDGTQKKCEIPTHCPICG 401 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S ++ + L+C A+ L HF+S+ A NI+GLGK+ +D F+ Sbjct: 402 SELLIEEKLIK---------CQNLSCKARLKNSLIHFISKKALNIDGLGKRIIDLLFER- 451 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I DIF+LQ E + GF D + N+ ++I + + I L RFI +LG Sbjct: 452 ---GKITKIEDIFSLQYEDL------EGLEGFKDKKIHNILNAIKESKGIDLWRFINALG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I H+G ++ LA + + + I + G+ +A ++VEF Sbjct: 503 IEHIGEGASKKLANTFG------------LEFCQKGFEDFITLDGFGEEMANSLVEFCHI 550 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 N ++ LL ++P + ++ ++ + K V TGTL + +R QE + LGA VS Sbjct: 551 --NQERIKNLLNILTPKTTQTPQSTTN-LSGKTFVITGTLSQ-KRESYQEILESLGAKVS 606 Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + +S+KTD ++ G+ GSKL KAQ+LGVKI++E+ F L+++ Sbjct: 607 SSVSKKTDFLLCGEEAGSKLTKAQELGVKILDEKDFWELIKE 648 >gi|50364975|ref|YP_053400.1| DNA ligase, polydeoxyribonucleotide synthase NAD+ [Mesoplasma florum L1] gi|81391966|sp|Q6F1V7|DNLJ_MESFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|50363531|gb|AAT75516.1| DNA ligase, polydeoxyribonucleotide synthase NAD+ [Mesoplasma florum L1] Length = 666 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 219/709 (30%), Positives = 365/709 (51%), Gaps = 46/709 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ EQA K ++ L +++ YY P + D+EYD + + + FP+L S Sbjct: 1 MTKEQASKLINDLRLKLNEWAKEYYVLDNPSVDDAEYDKTIHQLLDLENQFPELITS--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + K+GG ++ K TH P LSL I++ ++ F ++ + +++ +T E Sbjct: 58 DSITQKVGGIVSDKFEKHTHKYPMLSLGDIFSWDEFINFNKQVAKVTGTENN---EYTAE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++ Y+ G RGDG GE+V+ ++ I +IP LS+ + IE+RGEV Sbjct: 115 LKIDGLSISLIYKDGVLQKGVTRGDGKVGENVTTNVKTIKSIP--LSIPSKDEIEIRGEV 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 ++ K +F +N+E + G + +ANPRNAA+G LR+L+ + Sbjct: 173 FLGKKEFAKINEERLLNGDQLFANPRNAAAGTLRQLDSKIVAERNLDAYLYYYFNENNPI 232 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q++ + +++ LG +N + T + Y R+ L Y+IDG+V+K+++ L Sbjct: 233 NTQFDSINQIKNLGLKINKETKICKTLEEVKLYIEYYTEKRNELDYEIDGIVFKLNDKKL 292 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+++G A++P+W I++KF + T+LLDI +GRTG +T A+LEPV I G ++ A Sbjct: 293 QEEVGYTAKTPKWAIAYKFPAEVKQTKLLDIFPTVGRTGKITYNAKLEPVQIAGTTVSAA 352 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +L+N +YI +D+R+ V VK+AG++IP+V+ I +E+ + Sbjct: 353 SLNNAEYIM-----------AKDLRINSIVKVKKAGDIIPEVISAIKDEKFDLLPIWEKD 401 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + + C AQ L L+HF SR A NI GLG Q + Sbjct: 402 VQCPACNELL-------EKTSTEVDQFCVNFNCPAQILRSLEHFASRGAANIVGLGGQTI 454 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F+ + I ADIF ++ ++ I N FG+ S NL SI + +N S E Sbjct: 455 KKLFEEK----LITNIADIFKVEEHKEN----IINFEKFGEKSFENLIASIKESKNNSFE 506 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + +F LGIRHVG++ A +LA+ Y + N + L + VG+++A + Sbjct: 507 KTLFGLGIRHVGSKTALTLAQIYKNIDNLKNAT----------YEELSSIDSVGEVLAMS 556 Query: 612 IVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 IV++++ N+ + L +V+ KN S I K V TGTL + R ++ + Sbjct: 557 IVDWFKIESNLQLINELKSFDVNFEYLGQAKNTESTISEKSFVITGTLSE-SRDYFKDII 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V +S+KTD ++ G+N GSKL KA++L VK++NEE+F +L+ Sbjct: 616 ELNNGKVIGSVSKKTDYVLAGENAGSKLTKAEELNVKVINEEEFFAILK 664 >gi|257467825|ref|ZP_05631921.1| NAD-dependent DNA ligase [Fusobacterium ulcerans ATCC 49185] Length = 688 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 225/731 (30%), Positives = 361/731 (49%), Gaps = 50/731 (6%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 MK+ +L E +++ ++ + L ++ ++ YY ++ +I D EYD L + Sbjct: 1 MKEMKLNFFEENDMKKDKERIEKLRADLLKYNQYYYTNNESLISDVEYDMLMNELKELEE 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118 +P+ P +G KVTH P LSL +N E++ FI RI R Sbjct: 61 KYPEYK---SEASPTVIVGASNLRENKFQKVTHKKPMLSLSNTYNEEEIGDFIDRIKRLL 117 Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 +++D I + LE K+DG I+I+YEKGK V RGDG GEDV+ I I TIP L Sbjct: 118 PERED--IKYALELKLDGLSISIQYEKGKLVRGVTRGDGAIGEDVTENIMEIETIPHTLK 175 Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LN 237 + +E+RGE+ + + F +LN+ + G + +ANPRNAASG LR+++ + I L+ Sbjct: 176 EPL--DMEIRGEIVLPISRFESLNERRMEAGEEVFANPRNAASGTLRQIDASIIKERGLD 233 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 + + + + E ++ + LG +T + + + + L Y Sbjct: 234 CYFYFIVDAKNYGIQTHSESIKYLESLGIKTTGVCEVLDTASALKKRIDYWEQEKEKLDY 293 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 + DG+V KVD L +LG +SPRW I++KF KQ +T LL I Q+GRTG +TPVA Sbjct: 294 ETDGMVIKVDNLDLWDELGNTTKSPRWAIAYKFPAKQVTTTLLGITWQVGRTGKVTPVAE 353 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 LE V + G+ + A+LHN I+ +DIR+GD+V +++A E+IP+VV I Sbjct: 354 LEEVALSGSKVKRASLHNFHEIER-----------KDIRIGDKVFIEKAAEIIPQVVKSI 402 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 R + + P CP+C S V R+ K C + R+++FVS Sbjct: 403 KEFRDGSEKMITEPDKCPVCGSPVAREEGQVDIK-------CTNPVCPGKVKGRIEYFVS 455 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 RDA NI G G + ++ + I+ DI+ L+ ++ +ENI G SV N Sbjct: 456 RDAMNIGGFGSKMVEKMLE----LSFIKNVGDIYDLKDHKE----DLENIEKMGKRSVEN 507 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L DSI + + I++LGI +G + LA+ + N + + Sbjct: 508 LLDSIEASKKRDYSKVIYALGIPFIGKYSGKLLAEASRNIDNLMK----------MEIEE 557 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVF 654 LI + +GD A+A+ +F ++ NI + L E K +F Sbjct: 558 LIEIDGIGDKGAKAVYDFLRDEENIELINILKGHGLQFAMEEKEEEDQSEKIFSGKTFLF 617 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQ 713 TGTL+ +R + +E + +LG + +S+ D +I+G+ GSKL+KAQ+LG VKI+ EE+ Sbjct: 618 TGTLKNFKREEIKEEIEKLGGKNLSAVSKNLDYLIIGEKAGSKLKKAQELGTVKILTEEE 677 Query: 714 FLFLLQQYNTT 724 F+ + + N Sbjct: 678 FVEICKNNNKN 688 >gi|150015242|ref|YP_001307496.1| NAD-dependent DNA ligase LigA [Clostridium beijerinckii NCIMB 8052] gi|190359245|sp|A6LQB0|DNLJ_CLOB8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|149901707|gb|ABR32540.1| DNA ligase, NAD-dependent [Clostridium beijerinckii NCIMB 8052] Length = 663 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 196/714 (27%), Positives = 356/714 (49%), Gaps = 58/714 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ + + L ++++ + YY P + D +YD + P Sbjct: 1 MDKI-ERIKELVEKLNRYSYEYYSLDSPSVSDKDYDEKYYELQELERE----TEYVLPYS 55 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK-----KDDNSIFF 128 P ++G + K TH SL+K +++++ + R +F ++ ++ + + Sbjct: 56 PTLRVGDVVLEGFRKYTHKARLWSLDKAQSLQEIIDWHNRNVKFVEEARGRGENLPDLKY 115 Query: 129 TLEPKIDGTMITIRYE-KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + K DG I + Y +G AA RG G GE+V+A ++ I +IP L +N +I+EV Sbjct: 116 VVTKKFDGLTINLTYNTEGILEIAATRGTGSIGEEVTAQVKTIKSIP--LKINSNDILEV 173 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT 246 GE +++ F N+ P N RN A+G LR LN + R L+ F + +G Sbjct: 174 HGEAIMTQEAFNKYNET----SDTPLKNLRNGAAGALRNLNVKETARRNLSAFFYDVGYK 229 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 K EM++ ++ G PV++ +R + I + ++ IR L YDIDGLV + Sbjct: 230 EGTPFKTYMEMMEFIKQQGLPVDDYIRVCTSIEEIEKEIDYVRDIRFDLNYDIDGLVIAI 289 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ ++ +G + P+W I+ KF ++A+T+LLD++ +GR+G + P A LEPV + G Sbjct: 290 DDIRTRELIGYTVKFPKWAIAFKFEAQEATTKLLDVEWNVGRSGRVGPTAILEPVELAGV 349 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATL+N D I + +R+G V V+R+ +VIP+++ I+ ++ Sbjct: 350 TVKRATLNNMDDIAR-----------KGVRIGAEVFVRRSNDVIPEIMGIVPES-LEGSE 397 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 S P CP C S +V + A + C L+C Q ++ + H+ SR+A NI G Sbjct: 398 EISVPEVCPACGSHLVLN--------GAHYFCENTLSCKPQLVKTIVHYASREAMNIAGF 449 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 ++ + F+ +I+ +D++ L+ + F NL ++I K + Sbjct: 450 SERTAEQLFEK----LNIKSISDLYKLKEEDLIG------LEKFAAKKAQNLLEAIEKSK 499 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + L FI++LGI +VG + A+ L + S + + L+ V VGD Sbjct: 500 DCELYAFIYALGIPNVGVKTAKDLVSRFESIEGLKNAT----------FEELVGVQDVGD 549 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I+AQ ++ F++ + + +E LL ++ ++S E K +V TG+L+ R + Sbjct: 550 IVAQGVLAFFKEEKVLQTIEELLSLGVSPKYEEKEVIASAFEGKTVVATGSLKNYSRTEI 609 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ + LGA V+ +S+KTD +I G+ GSKL KA++LG+KI++E++F +L++ Sbjct: 610 KDKLESLGAKVAGSVSKKTDYVIAGEAAGSKLTKAEELGIKILSEDEFEEMLRR 663 >gi|3800758|gb|AAC68862.1| thermostable DNA ligase [Thermus filiformis] Length = 667 Score = 475 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 236/720 (32%), Positives = 376/720 (52%), Gaps = 59/720 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E+AR+ ++ L I YH+ YY + P I D+EYD L R + FP+ P Sbjct: 1 MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEFK---SP 57 Query: 72 NGPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G + V H SL+ + E++ F R+ R + +T+ Sbjct: 58 DSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERLERL----AEAPSLYTV 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K+DG + + YE+G + + GDG GE+V+ + IPTIPR L P+ +EVRGE Sbjct: 114 EHKVDGLSV-LYYEEGVWSTGS--GDGEVGEEVTQNLLTIPTIPRRLKGV-PDRLEVRGE 169 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLGKTS 247 VY+ FL LN+E+ G K + NPRNAA+G LR+ +P + F+ GLG Sbjct: 170 VYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLGL 229 Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 E K QYE+L ++ GFPV + +A G+ Y + R LP++ DG+V K+ Sbjct: 230 EESGLKSQYELLLWLKEKGFPVEHCYEKALGAEGVEEVYRRGLAQRHALPFEADGVVLKL 289 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ +L +LG AR+PR+ +++KF ++ TRLLD+ Q+GRTG +TPV LEPV I G+ Sbjct: 290 DDLTLWGELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGS 349 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ TLHNE YI+ L DIR+GD VLV +AG VIP+V+ ++ R + Sbjct: 350 EVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGKER 398 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P +P CP C R+V++ HRC L C A++ E ++H+ SR A +IEGL Sbjct: 399 PIRWPEACPECGHRLVKE--------GKVHRCPNPL-CPAKRFEAIRHYASRKAMDIEGL 449 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++ ++ + +R AD++ L++ + G+ S NL I + + Sbjct: 450 GEKLIERLLEK----GLVRDVADLYHLRKEDLLG------LERMGEKSAQNLLRQIEESK 499 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + LER +++LG+ VG +AR+LA+ + + + + + Sbjct: 500 HRGLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELIEVEEVGE---------- 549 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + A+AI+E ++P V L + + E VS + V TG L + R + Sbjct: 550 LTARAILETLKDPAFRDLVRRLKEAGVSMESKEE--VSDLLSGLTFVLTGELSR-PREEV 606 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 + + +LGA V+ +SRKT ++VG+NPGSKLEKA+ LGV ++ EE+F L++ + Sbjct: 607 KALLQRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVAVLTEEEFWRFLKEKGAPVP 666 >gi|15618073|ref|NP_224357.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae CWL029] gi|15835684|ref|NP_300208.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae J138] gi|16752895|ref|NP_445166.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae AR39] gi|33241485|ref|NP_876426.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae TW-183] gi|7674003|sp|Q9Z934|DNLJ_CHLPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|4376415|gb|AAD18302.1| DNA Ligase [Chlamydophila pneumoniae CWL029] gi|7189537|gb|AAF38439.1| DNA ligase [Chlamydophila pneumoniae AR39] gi|8978522|dbj|BAA98359.1| DNA ligase [Chlamydophila pneumoniae J138] gi|33235993|gb|AAP98083.1| DNA ligase (NAD+) [Chlamydophila pneumoniae TW-183] Length = 662 Score = 475 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 225/708 (31%), Positives = 374/708 (52%), Gaps = 50/708 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E ++ +L +E+ HD YY +P I D EYD R+ I + P+ Sbjct: 1 MKEENSQAHYLALCRELEDHDYSYYVLHRPRISDYEYDMKLRKLLEIERSHPEWKVLW-- 58 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P ++G + + V+H P LS+ ++ E+L +F +R+ + +T+E Sbjct: 59 -SPSTRLGDRPSGTFSVVSHKEPMLSIANSYSKEELSEFFSRVEKSLGTSP----RYTVE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG + IRYE V A RG+G GED+++ IR I ++P L + PE IEVRGEV Sbjct: 114 LKIDGIAVAIRYEDRVLVQALSRGNGKQGEDITSNIRTIRSLPLRLPEDAPEFIEVRGEV 173 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 + S + F +N++ + + +ANPRNAA G L+ L+P + R L ++ L + Sbjct: 174 FFSYSTFQIINEKQQQLEKTIFANPRNAAGGTLKLLSPQEVAKRKLEISIYNLIAPGDND 233 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + YE LQ+ GFPV+ R +T ++S +++ R++LP +IDG V KVD + Sbjct: 234 S--HYENLQRCLEWGFPVSGKPRLCSTPEEVISVLKTIETERASLPMEIDGAVIKVDSLA 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+ LG + RW +++K+A ++A T L DI +Q+GRTG+LTPVA+L PV + G+L++ Sbjct: 292 SQRVLGATGKHYRWALAYKYAPEEAETLLEDILVQVGRTGVLTPVAKLTPVLLSGSLVSR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+L+NED I +DIR+GD V V + GEVIPKVV + +R ++ ++ Sbjct: 352 ASLYNEDEIHR-----------KDIRIGDTVCVAKGGEVIPKVVRVCREKRPEGSEVWNM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P FCP+C S VVR+ + + + C A +E+++ FV R A NI+ LG + Sbjct: 401 PEFCPVCHSHVVREEDRVSVR-------CVNPECVAGAIEKIRFFVGRGALNIDHLGVKV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ + AD+F L I G + S N+ +SI + +++ L Sbjct: 454 ITKLFE----LGLVHTCADLFQLTTEDLM------QIPGIRERSARNILESIEQAKHVDL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +RF+ +LGI +G +A LA ++ + + L+ + +G+ +A Sbjct: 504 DRFLVALGIPLIGIGVATVLAGHFETLDRVISAT----------FEELLSLEGIGEKVAH 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 AI E++ + ++ ++ + H S K V TGTL+ + R A+ + Sbjct: 554 AIAEYFSDSTHLNEIKKMQDLGVCISPYH--KSGSTCFGKAFVITGTLEGMSRLDAETAI 611 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G V + +S++TD +++G+NPGSKLEKA++LGV I+++E F L+ Sbjct: 612 RNCGGKVGSSVSKQTDYVVMGNNPGSKLEKARKLGVSILDQEAFTNLI 659 >gi|269959115|ref|YP_003328904.1| NAD-dependent DNA ligase [Anaplasma centrale str. Israel] gi|269848946|gb|ACZ49590.1| NAD-dependent DNA ligase [Anaplasma centrale str. Israel] Length = 673 Score = 475 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 254/709 (35%), Positives = 396/709 (55%), Gaps = 42/709 (5%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +EQAR+ L+ L ++ +HD Y+ P + D +YD L + + FPD+ + +D Sbjct: 2 LEQARRRLAGLNAKLRHHDVLYHGLDAPEVTDHQYDLLVQEKKRLLDEFPDIRQYDD--- 58 Query: 74 PLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 + +G ++ KV H P LSLE + ++D+ KFITR+ RF + + D+ + + E Sbjct: 59 YADVVGTPKIDSRFPKVQHLEPMLSLENAFTVQDVEKFITRVRRFLELQPDDILELSCEL 118 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG + Y GK A RG+GH GED++ + +P L + PE++EVRGE+Y Sbjct: 119 KMDGMSFSALYHGGKLTRVATRGNGHFGEDITTNAMVLRGLPHQL-DSAPEVLEVRGEIY 177 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + DF L G +ANPRNAA+G +R+LN + + Sbjct: 178 MHHEDFEKLR------GSCNFANPRNAAAGSIRQLNQKIVEERN--LSYVAYSAVNSTFA 229 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E+L+++ GF N V + V++YN + + RS L YDIDG+VYKV+ + Q Sbjct: 230 TQQEILKQLDEWGFHTNKQVLFTDKIEEAVAFYNSVYTTRSALGYDIDGVVYKVNSINFQ 289 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 K LG +SPRW I+HKF +A T+LLDI +Q+GRTG++TP+A LEP+NIGG +++ A+ Sbjct: 290 KLLGATGKSPRWAIAHKFPSTEARTKLLDITVQVGRTGVVTPIAELEPINIGGVMVSRAS 349 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN + I+ +D+R+GD V+VKRAGEVIP+VVD+ R Q F FPS Sbjct: 350 LHNLNEIER-----------KDVRIGDLVIVKRAGEVIPQVVDVDKTLRSSGTQKFVFPS 398 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S++ R+ A RC L+C AQ LER+KHFVSRD NI GLG +Q++ Sbjct: 399 HCPSCGSKLHREPGE------VALRCVAELSCKAQALERVKHFVSRDGLNIMGLGAKQIE 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 FF I ADIF+L+ + E+ G+G+ SV NL +I + L Sbjct: 453 FFSNH----GLINGIADIFSLEEKLHGINLGTEH--GWGEKSVANLIAAIRNSATVRLSN 506 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LGIR +G A+ +A++Y SY+N+ Q + + ++ +++ +G+ ++ Sbjct: 507 FIFALGIRFIGVGAAKLVAEHYRSYKNWHQAMLALTETHDT-----VQIRGLGEKSISSL 561 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ N+ +E+L +++ SS I K +VFTGTL+ + R +A+ Sbjct: 562 KAFFSVQGNLEVLESLSAKLNILDEASPAQRGSSAISGKTVVFTGTLESMSRTEAKLQAE 621 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA V+ +S T +++ G NPGSK EKA L V++++E+ ++ +++ Sbjct: 622 SLGAKVANSVSANTWLLVAGSNPGSKHEKALSLNVRVIDEQTWVKMVED 670 >gi|257053690|ref|YP_003131523.1| NAD-dependent DNA ligase LigA [Halorhabdus utahensis DSM 12940] gi|256692453|gb|ACV12790.1| DNA ligase, NAD-dependent [Halorhabdus utahensis DSM 12940] Length = 693 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 232/717 (32%), Positives = 360/717 (50%), Gaps = 51/717 (7%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 ++AL E A ++ L + I YHD YY + P+I D YDAL R + F Sbjct: 19 FESVDALDAESAHEQAEQLREAIRYHDHQYYVENDPVIGDRTYDALFARLQDLEDGF--- 75 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 + N P ++GGE L V H P S+++ + ++R+F R+ R + Sbjct: 76 -GLDRENSPTQRVGGEPLDKLASVEHVAPMQSIDQGGEVTEVREFDERVARGMGDAGFDP 134 Query: 126 IF--FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 + EPK DG + I YE G + AA RGDG GEDV+ +R IP++P L + P+ Sbjct: 135 DERTYFCEPKFDGLSVEIVYEDGVYQRAATRGDGEVGEDVTENVRTIPSVPGRLRGDYPD 194 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243 + VRGEVYI + F A N E I G P+ANPRNAA+G LR+L+P+ Sbjct: 195 TLAVRGEVYIPTDAFQAYNRERIERGDDPFANPRNAAAGTLRQLDPSITAERPLAIFFFG 254 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 + + + E+ +++ G V + + ++ + Y + + R LP++IDG+V Sbjct: 255 VLDASVEFEQNSEVYERLPEWGLRVTDLAEEVDSIEDAIDYRDRLLDERDDLPFEIDGVV 314 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 K+++ + LG AR+PRW ++KF + T + D+ +Q+GRTG LTPVA ++PV + Sbjct: 315 IKLNDRAACDALGSTARAPRWAFAYKFPARTERTTIRDVVVQVGRTGRLTPVALMDPVEV 374 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +++ A+LHN I+ L + VGD V V+RAG+VIP+V +++ Sbjct: 375 GGVMVSRASLHNPAEIERL-----------GVDVGDEVRVQRAGDVIPEVAEVLDAASDG 423 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 F FP CP+C S V + CTGGLAC AQ + H+ SR +I Sbjct: 424 ---TFDFPESCPVCDSPV--------ERDGPLAFCTGGLACPAQLERAIVHYASRAGLDI 472 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGLG++++ A + AD++ L + TS + G+G SV NL + + Sbjct: 473 EGLGEERVQQLLD----AGLVEELADLYELGQLDLTS------LEGWGMQSVANLQEELE 522 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 R L+ F+ +L + +GA A +LA+ + +++ D L V Sbjct: 523 ASREPPLDDFLAALNVPSLGAATATALAREFGTFEAVMDA----------DREQLQAVDD 572 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 +G +A I EF++ RN A+E LL V P E E++ VFTGTL R Sbjct: 573 IGPKVAAEIREFFETERNREAIERLLDHVDPQPYEVE--GGDELDGLTFVFTGTLSNYTR 630 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 +AQE V G ++ +S TD ++VG+NPG K + A V+I++E++F LL Sbjct: 631 SEAQELVEVHGGSATSSVSGNTDYLVVGENPGQRKRDDADANDVQILDEDEFEELLA 687 >gi|254371060|ref|ZP_04987062.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|151569300|gb|EDN34954.1| hypothetical protein FTBG_00816 [Francisella tularensis subsp. tularensis FSC033] Length = 643 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 251/690 (36%), Positives = 383/690 (55%), Gaps = 54/690 (7%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 Y+ KPII DS+YD L R + + P N L+++GGE+ + H Sbjct: 2 YHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI---NSVLDRVGGEVLAGFETIKHKKK 58 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL ++++E+LR F +I I EPK+DG I+I Y+ GKF YA R Sbjct: 59 MTSLANVFSLEELRDFYDKIE--------YDIELECEPKMDGLAISIFYKNGKFDYAVTR 110 Query: 155 GDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 GDG GE VS ++ I +P + N PE +EVRGE+ + K FL+LN+ M K + Sbjct: 111 GDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGEIILDKQSFLSLNEYMQTHENKTF 170 Query: 214 ANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT--SEIFAKGQYEMLQKMRCLGFPVNN 270 ANPRNAA+G +R L+ R L + +G+G ++ + Q+E++Q ++ GF +++ Sbjct: 171 ANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKDFVYPETQFELMQLLQSFGFTISD 230 Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 + A F + Y+++M R+ L YDIDGLV+KV+ LQ +G AR P+W I++KF Sbjct: 231 NMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVNNIKLQDTIGYTARGPKWAIAYKF 290 Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390 ++ + +L+++ Q+GRTG +TPVARL+PV +GG +++NATLHN + IK Sbjct: 291 PAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVIVSNATLHNINEIKR--------- 341 Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450 +DIRVGDRV+V+RAG+VIP+VV + R DAQ P+ CP+C S++ + Sbjct: 342 --KDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQMVEMPTNCPVCDSKI------ENV 393 Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510 A +RCTGG C AQ ERLKHFVSR A +I+ LG + ++ A I+ PADI Sbjct: 394 NDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLGAKLIEQLV----AANLIKYPADI 449 Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 + L Q T + S N+ DSI K + SL RFIF++GI+ +G + +L Sbjct: 450 YKLNFEQLTG------LERMAAKSSQNVLDSITKSKEPSLARFIFAIGIKDIGEVSSDAL 503 Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 A ++ S ++F + LI + +G+I+A IV F+ + NI VE L Sbjct: 504 ANHFGSLESFRDA----------KFEELIEINDIGEIMANNIVSFWHDSLNIKIVEEFLA 553 Query: 631 EVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 + + E + K +V TG+ + R + + + +GA V++ +S+KTD++ Sbjct: 554 IGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTDMV 613 Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 I GDN GSKL KAQ+LGV+++ E+ LL Sbjct: 614 ICGDNAGSKLTKAQELGVEVILEDNLKDLL 643 >gi|313886637|ref|ZP_07820349.1| DNA ligase (NAD+) [Porphyromonas asaccharolytica PR426713P-I] gi|312923933|gb|EFR34730.1| DNA ligase (NAD+) [Porphyromonas asaccharolytica PR426713P-I] Length = 679 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 210/722 (29%), Positives = 349/722 (48%), Gaps = 58/722 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E+ L I H+ YY + P I D++YDAL +R + P+LA DP Sbjct: 1 MTRNNTELEIEQLRTTIEQHNRAYYLDNAPTISDADYDALMQRLLTLEAEHPELA---DP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P ++G + N + +V H P LSL +N +++ + R + + + E Sbjct: 58 TSPSLRVGRDRNDAFVQVAHERPMLSLSNTYNYDEIAEICERTDTLL---ATDDVPWVAE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV------LSLNIPEII 185 K DG+ I++ YE+G V A RGDG G+DV+ +R I ++P I Sbjct: 115 MKYDGSSISLIYEEGVLVRAVTRGDGTLGDDVTVNVRTIQSVPLRLRPVAGHPDYTMGRI 174 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEV + +F LN E A G P+ANPRNAA+G L+ LN R L + L Sbjct: 175 EVRGEVLLPFKEFERLNGERTAEGEAPFANPRNAAAGTLKTLNSRVVAQRRLLCICYYLY 234 Query: 245 KTSEIF--AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + YE ++ + +GF +++ + Y +E R LPY DG+ Sbjct: 235 ALDDEARLPDSYYERMKLLEEMGFNTGVAPFKSSDLSALYHYIDEWDVQRGDLPYATDGI 294 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KVD + Q+ LG A+SPRW ++K+ + A LL +D Q+GR+G++TPVA +EPV Sbjct: 295 VLKVDSLTQQRTLGNTAKSPRWAFAYKYQPENARAELLSVDYQVGRSGVVTPVANVEPVL 354 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 I G ++ ATLHNE++IK L D+ D V +++ GE+IPK+ + + R Sbjct: 355 ISGTVVRRATLHNEEFIKSL-----------DLHYHDYVYIEKGGEIIPKITAVETSLRR 403 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P+++P P CP C + + + + C AC Q + R++H+ +R A + Sbjct: 404 PESEPVRLPERCPACGAPLQQIDG------SVGYYCVNSYACPPQIMGRIEHYCTRRAAD 457 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I + F + I D++ L + + F + S+ NL SI Sbjct: 458 INVGPETIDALFDR-----HLIENIDDLYKLTASD------LAQLPNFKEKSINNLLASI 506 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + ++ R ++ +GIR+VG A++LA+++ S AQ + L +P Sbjct: 507 EQSKSRPFARLLYGIGIRYVGEGTAKTLARHFQSIDRLAQATD----------YELQALP 556 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTL 658 VG IA+ +V F+ RN + L + + E+ + +E +++V +G+ Sbjct: 557 DVGPKIAEQVVYFFSLERNQQLIAELQRCGVILEEQTEETTDAPQSNLLEGERIVISGSF 616 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717 + R + ++ + Q G V +S +T +++G + G SK KA+QLG+ ++ EE+FL Sbjct: 617 TQHSRDEYKQLIEQHGGVNVGSISGRTTFVLMGSDMGPSKRAKAEQLGIPLVTEEEFLAR 676 Query: 718 LQ 719 L Sbjct: 677 LN 678 >gi|251777669|ref|ZP_04820589.1| DNA ligase, NAD-dependent [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243081984|gb|EES47874.1| DNA ligase, NAD-dependent [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 667 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 202/716 (28%), Positives = 355/716 (49%), Gaps = 56/716 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + + L + ++ + YY P + D +YD + P Sbjct: 1 MVDKIERIKELVEILNKYSYDYYVLDNPSVSDKDYDKKYDELKLLEKE----TGFVLPYS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK-----KDDNSIFF 128 P +IG + K TH SL+K ++++++ + R +F + +D + + Sbjct: 57 PTLRIGDIVLDGFNKYTHKGKLWSLDKAQSLDEIKDWHNRNVKFVNEMRAQGEDLPDLKY 116 Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 K DG + + Y E+G +A RG+G GE+V+A ++ I +IP L N ++ EV Sbjct: 117 IATKKFDGLTVNLTYNEEGMLEVSATRGNGEIGENVTAQVKTIKSIPLKLQENH-DLFEV 175 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT 246 GE +++ F N P N RN A+G LR LN + R L+ F + +G Sbjct: 176 HGEAIMTQEAFEKYNSSA----DSPLKNLRNGAAGALRNLNVKETARRDLSAFFYDVGYK 231 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 K EM+ ++ G PV++ ++ + I + + ++ IR L YDIDGLV + Sbjct: 232 EGYQFKTYLEMMDFIKEKGLPVDDYLKVCVSIEDIKNEIDYIEKIRFDLNYDIDGLVIAI 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ ++ LG + P+W I++KF ++A+T+LLD++ +GR+G + P A LEPV + G Sbjct: 292 DDIKTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRIGPTAILEPVELAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATL+N D IK + +R+G V ++R+ +VIP+++ + N +++ Sbjct: 352 TVKRATLNNMDDIKR-----------KGVRIGADVFIRRSNDVIPEIMGTLENT-LENSE 399 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP C S VV + A + C L+C Q ++ + H+ SRDA NI G Sbjct: 400 EIFPPIECPACGSHVVLN--------GAHYFCENTLSCKPQLVKTIVHYASRDAMNIAGF 451 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 ++ + F+ +I+ +D++ L++ + + FGD NL +++ + Sbjct: 452 SEKTAEQLFEK----LNIKSISDLYKLKKEDLIN------LEKFGDKKAENLLNAVEGSK 501 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 L FI++LGI +VG + A+ + + S + L+ V VGD Sbjct: 502 ECKLYSFIYALGIPNVGVKTAKDIVNKFKSIDGLKNAT----------FEELVSVQDVGD 551 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I+A+ I+EF++ + I ++ LL I K V S ++K +V TGTLQ R + Sbjct: 552 IVAKDIIEFFKEEKVISTIDELLSLGVNPIFDEVKIVESIFKDKTVVATGTLQNYSRTEI 611 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + + LGA VS +S+KTD +I G++ GSKL KA++LGV++++EE+F +L + + Sbjct: 612 KTKLESLGAKVSGSVSKKTDYVIAGESAGSKLTKAEELGVEVISEEEFEKMLGRES 667 >gi|268679995|ref|YP_003304426.1| DNA ligase, NAD-dependent [Sulfurospirillum deleyianum DSM 6946] gi|268618026|gb|ACZ12391.1| DNA ligase, NAD-dependent [Sulfurospirillum deleyianum DSM 6946] Length = 648 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 216/701 (30%), Positives = 351/701 (50%), Gaps = 58/701 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +E S + + YY PI D EYD L A P A D + P ++ Sbjct: 4 QEYSEKIEILKAWAKAYYVDDAPIASDEEYDRLYHEILAFEKENPLFA---DESSPTKRV 60 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + K +H S+E +++ DL +I R+ + + F EPK DG Sbjct: 61 GGMVLEGFNKASHKARMWSMEDVFDEHDLDAWIERVKKV-----KENFTFYCEPKFDGAS 115 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + + Y+KG A RGDG GEDV+ ++ I +IP L + +IE+RGEV I K DF Sbjct: 116 MNLIYDKGVLQQAITRGDGSIGEDVTQNVKTIGSIP--LQIAYEGLIEIRGEVVIKKADF 173 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257 LN+E + +ANPRNAA+G LR+L+ + R L F+ G+G +++ E Sbjct: 174 ECLNEERLHTNEPLFANPRNAAAGSLRQLDTSVTAKRKLMFYPWGIG-ENQLVQTRLSEK 232 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 ++ + LGF + + Y+E+ R + +DG+V KVDE +LQ++LG Sbjct: 233 MRFVYDLGFLQPPRIVVTQNVEDVHMLYHELIETRDAIEMMMDGMVVKVDEIALQEELGY 292 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 + P+WM++ KF + T+L I +Q+GRTG++TPVA +E VNI G ++ ATLHN D Sbjct: 293 TVKYPKWMVAFKFPAIEKVTKLRAITLQVGRTGVVTPVAEVEAVNIEGVVVERATLHNFD 352 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ +DIR+GD V++ R+G+VIPK++ ++V R P CP+C Sbjct: 353 EIER-----------KDIRIGDSVIIIRSGDVIPKIIKVLVERRDGTEVIPKRPLVCPVC 401 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 ++ + A L+C A+ + + HF S+ A NI+GLG + ++ + Sbjct: 402 GGELLDEG---------ALIKCQNLSCDARVVGAMIHFASKKALNIDGLGDKIIEQLYAQ 452 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + + D++TL Q + GF NL D+I + + ++LE+FI +L Sbjct: 453 K----VVLHVKDLYTLSLEQL------LALEGFKVKKAQNLLDAIAQSKGVALEKFINAL 502 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI H+G A+ +A+ + + +I + G+ +A+++VEF Sbjct: 503 GIEHIGEVAAKKIARTFG------------LEWLEATHEQIIGLEGFGEEMAKSLVEFIH 550 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 N + L+ ++P + E S K +V TG++ K R + + + LGA V Sbjct: 551 V--NAVETKELMGIIAPVASKLEI-TESVFTGKTVVLTGSMSK-SRDEMKAMLESLGAKV 606 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 S +S+KTD +I G+ GSKL+KA +LGVK ++E + +L Sbjct: 607 SGSVSKKTDFVIFGEEAGSKLDKALELGVKTLSEAEVNEML 647 >gi|56416472|ref|YP_153546.1| DNA ligase [Anaplasma marginale str. St. Maries] gi|81359291|sp|Q5PBN8|DNLJ_ANAMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56387704|gb|AAV86291.1| DNA ligase [Anaplasma marginale str. St. Maries] Length = 673 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 253/709 (35%), Positives = 397/709 (55%), Gaps = 42/709 (5%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +EQAR+ L+ L ++ +HD Y+ P + D +YD L + + FPD+++ +D Sbjct: 2 LEQARRRLAGLNAKLRHHDVLYHGLDAPEVTDHQYDLLVQEKKRLLDEFPDISQYDD--- 58 Query: 74 PLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 + +G ++ KV H P LSLE + ++D+ KFITR+ RF + + D+ + + E Sbjct: 59 YADVVGTPKIDSRFPKVQHLEPMLSLENAFTVQDVEKFITRVRRFLELQPDDILELSCEL 118 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG + Y GK A RG+GH GED++ + +P L + PE++EVRGE+Y Sbjct: 119 KMDGMSFSALYHGGKLTRVATRGNGHFGEDITTNAMVLRGLPHQL-DSAPEVLEVRGEIY 177 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + DF L G +ANPRNAA+G +R+LN + + Sbjct: 178 MHHEDFEKLR------GSCNFANPRNAAAGSIRQLNQKIVEERN--LSYVAYSAVNSTFA 229 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E+L+++ GF N V + +++YN + + RS L YDIDG+VYKV+ + Q Sbjct: 230 TQQEILKQLDEWGFHTNKQVLFTDKIEEAIAFYNSVYTTRSALGYDIDGVVYKVNSTNFQ 289 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 K LG +SPRW I+HKF +A T+LLDI +Q+GRTG++TP+A LEP+NIGG +++ A+ Sbjct: 290 KLLGATGKSPRWAIAHKFPSTEARTKLLDITVQVGRTGVVTPIAELEPINIGGVMVSRAS 349 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN + I+ +D+R+GD V+VKRAGEVIP+VVD+ R Q F FPS Sbjct: 350 LHNLNEIER-----------KDVRIGDLVIVKRAGEVIPQVVDVDKTLRSSGTQKFVFPS 398 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S++ R+ A RC L+C AQ LER+KHFVSRD NI GLG +Q++ Sbjct: 399 HCPSCGSKLHREPGE------VALRCVAELSCKAQALERVKHFVSRDGLNIMGLGAKQIE 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 FF I ADIF+L+ + E+ G+G+ SV NL +I + L Sbjct: 453 FFCNH----GLIGSIADIFSLEEKLHGINLDTEH--GWGEKSVANLIAAIRNSATVRLSN 506 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LGIR +G A+ +A++Y SY+N+ Q + + ++ +++ +G+ ++ Sbjct: 507 FIFALGIRFIGVGAAKLVAEHYRSYKNWHQAMLALTETHDT-----VQIRGLGEKSISSL 561 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ N+ +E+L +++ SS I K +VFTGTL+ + R +A+ Sbjct: 562 KAFFSVQGNLEVLESLSAKLNILDEASPAQRGSSAISGKTVVFTGTLESMSRTEAKLQAE 621 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA V+ +S T +++ G NPGSK EKA L V++++E+ ++ +++ Sbjct: 622 SLGAKVANSVSANTWLLVAGSNPGSKHEKALSLNVRVIDEQTWVKMVED 670 >gi|325283108|ref|YP_004255649.1| DNA ligase [Deinococcus proteolyticus MRP] gi|324314917|gb|ADY26032.1| DNA ligase [Deinococcus proteolyticus MRP] Length = 676 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 222/714 (31%), Positives = 361/714 (50%), Gaps = 49/714 (6%) Query: 12 LSIEQA---RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +S + A + L E+ H+ YY+ P I D EYDAL R+ A P+ A + Sbjct: 1 MSADAAPLTHDDYLRLRAELERHNRAYYEQDNPEIPDDEYDALARQVRAAEAEHPEWAAA 60 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK-DDNSIF 127 P ++GG ++ + V H P SL+ ++ ++ + R+ R D Sbjct: 61 G---SPTERVGGAVSAAFEPVDHPTPMTSLDNAFDDSEMAGWQERLARALNLPPDHGDFA 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 FT E KIDG + + Y G+ +AA RG+G +GE V+A + IP IP+ L E+ EV Sbjct: 118 FTGELKIDGLSVNLYYRDGELQWAATRGNGRTGEKVTAQLLTIPGIPQQLPGLSGEL-EV 176 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY+++ DF A N +G NPRN A+G LR+ +P R L + LG+ Sbjct: 177 RGEVYLAREDFAAYNARAEELGEPLLKNPRNGAAGALRQKDPELTRRRGLKAIFYSLGRR 236 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + A+ Q+E+L+ + GFP + R + ++Y+ EM + R+ LP+D DG V K+ Sbjct: 237 DGVPARTQWEVLEWLAAQGFPTSPYSRPLGSLAEALAYHAEMTAARAALPFDADGTVIKL 296 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D +Q++ G +R+PRW I++KF ++ T L I + +GRTG +TP+A L P I G+ Sbjct: 297 DSLRVQEEAGFTSRAPRWAIAYKFPVEEVETLLESISVGVGRTGKITPLAHLSPRLIEGS 356 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ ATLHNED+++ + D+RVGD V+V+++G VIP+++ ++ + R DAQ Sbjct: 357 TVSRATLHNEDFVRDM-----------DLRVGDTVVVRKSGGVIPQIMRVLPDRRPADAQ 405 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 PF+FP+ CP C +VR A C AC AQQ ERL +FVSR+A +I G+ Sbjct: 406 PFAFPAECPECGHTLVRSEG------DANTYCPNP-ACPAQQFERLSYFVSREAMDIRGV 458 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++ + +R AD + L Q + + GD N+ + + Sbjct: 459 GERLIRQLLAE----GLVRDAADFYFLSAEQLSG------LERSGDKKAANILAQLEASK 508 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 L R I +LGI+HVG ++++LA + + + +A +GD Sbjct: 509 TRPLWRVINALGIQHVGTRVSQALAAEFGTLERLLAADAPAVAAVP----------GLGD 558 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 +IA+ +V + + L + ++ + + V TGTL + R Sbjct: 559 VIAENLVAALHDGAMQNLLRRLEEAGVRPPETVQER-GTALSGLSFVITGTLSQ-PREYY 616 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + GA V+ ++ KT ++ G++ GSKL+KAQQLG +++E LL + Sbjct: 617 KALLEAQGARVTGSVTGKTSFLLAGEDAGSKLDKAQQLGTAVLDEAGLEALLTE 670 >gi|313665597|ref|YP_004047468.1| DNA ligase (NAD(+)) [Mycoplasma leachii PG50] gi|312949194|gb|ADR23790.1| DNA ligase (NAD(+)) [Mycoplasma leachii PG50] Length = 668 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 228/709 (32%), Positives = 384/709 (54%), Gaps = 46/709 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S EQ ++ L+++++ YY P + D+EYD + ++ + +P+ S Sbjct: 1 MSKEQVLLRINQLKEQLNLWSKQYYVDDNPSVDDTEYDLALKELISLENLYPEFITS--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+GG +N K+TH P LSL ++N ++ +F T++ + ++ + E Sbjct: 58 DSPSQKVGGTVNEKFLKITHKTPMLSLGNVFNFDEFLEFNTQVSKVSNNLNN---EYVAE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++ YE G V AA RG+G GEDV+ ++ I +IP L ++ E +EVRGE+ Sbjct: 115 LKIDGLSISLVYENGVLVSAATRGNGIVGEDVTINVKTIKSIP--LKISKKERVEVRGEI 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 Y+SK +F +N + + +ANPRNAA+G LR+L+ + + + Sbjct: 173 YLSKAEFEKINKKRLLNSEDLFANPRNAAAGTLRQLDSKIVASRNLDAFLYYYISDDSAK 232 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 QYE + ++ LGF N I +Y + ++++ L Y IDG+V+K+++ +L Sbjct: 233 LNQYESILRLNQLGFKTNKETMLCKNLDQIKAYIQKYTNLKNDLDYQIDGIVFKINDKNL 292 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q LG ++ P+W I++KF + T+LLD+ +GRTG +T A+LEPV + GA I+ A Sbjct: 293 QNSLGFTSKIPKWAIAYKFPAEIKQTKLLDVFATVGRTGKITYNAKLEPVFLMGAKISAA 352 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TL+N +YIK +D+R+ V +K+AG+VIP+V++ I +E + F Sbjct: 353 TLNNAEYIK-----------TKDLRINSIVKIKKAGDVIPEVIEAIKDEDFYKLEKFKPA 401 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 +CP C S + ++ + +CS + L L+HF SR+A NI LG + L Sbjct: 402 LYCPNCYSLLEKNDGE-------VDQFCINSSCSMKILRSLQHFSSREAMNIVSLGDRSL 454 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F + I+ +DI+ L+ + +I I FG S NL DSIN +N SLE Sbjct: 455 EILFNLK----IIQNISDIYKLEEYKD----QILAIDNFGLKSYLNLIDSINASKNNSLE 506 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + +F LGIRH+G++ A+ LAK Y + N + LI++ +G+ +A + Sbjct: 507 KVLFGLGIRHIGSKTAKILAKKYQNIDNLMSA----------SYDELIQINSIGESLALS 556 Query: 612 IVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 IV++++ N+ + L ++ + + N +S I NK V TGTL + R + + + Sbjct: 557 IVDWFKIEDNLKLINDLKSFNINFNYLGAKINSNSIIANKSFVITGTLTR-PREEFKTLI 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +S +S++TD ++VG+N GSKLEKA++LGVKI++E+ F LL+ Sbjct: 616 ENNAGKISGSISKQTDYLLVGNNVGSKLEKAKKLGVKIIDEQHFFDLLK 664 >gi|332299534|ref|YP_004441455.1| DNA ligase [Porphyromonas asaccharolytica DSM 20707] gi|332176597|gb|AEE12287.1| DNA ligase [Porphyromonas asaccharolytica DSM 20707] Length = 679 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 211/722 (29%), Positives = 349/722 (48%), Gaps = 58/722 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E+ L I H+ YY + P I D++YDAL +R + P+LA DP Sbjct: 1 MTRNNTELEIEQLRTTIEQHNRAYYLDNAPTISDADYDALMQRLLTLEAEHPELA---DP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P ++G + N + +V H P LSL +N +++ + R + + + E Sbjct: 58 TSPSLRVGRDRNDAFVQVAHERPMLSLSNTYNYDEIAEICERTDTLL---ATDDVPWVAE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV------LSLNIPEII 185 K DG+ I++ YE+G V A RGDG G+DV+ +R I ++P I Sbjct: 115 MKYDGSSISLIYEEGVLVRAVTRGDGTLGDDVTVNVRTIQSVPLRLRPVAGHPDYTMGRI 174 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEV + +F LN E A G P+ANPRNAA+G L+ LN R L + L Sbjct: 175 EVRGEVLLPFKEFERLNGERTAEGEAPFANPRNAAAGTLKTLNSRVVAQRRLLCICYYLY 234 Query: 245 KTSEIF--AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + YE ++ + +GF +++ + Y +E R LPY DG+ Sbjct: 235 ALDDETRLPDSYYERMKLLEEMGFNTGVAPFKSSDLSALYHYIDEWDVQRGDLPYATDGI 294 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KVD + Q+ LG A+SPRW ++K+ + A LL +D Q+GR+G++TPVA +EPV Sbjct: 295 VLKVDSLTQQRTLGNTAKSPRWAFAYKYQPENARAELLSVDYQVGRSGVVTPVANVEPVL 354 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 I G ++ ATLHNE++IK L D+ D V +++ GE+IPK+ + + R Sbjct: 355 ISGTVVRRATLHNEEFIKSL-----------DLHYHDYVYIEKGGEIIPKITAVETSLRR 403 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P+++P P CP C + + + + C AC Q + R++H+ +R A + Sbjct: 404 PESEPVRLPELCPACGAPLQQIDG------SVGYYCVNSYACPPQIMGRIEHYCTRRAAD 457 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I + F + I D++ L + + F + S+ NL SI Sbjct: 458 INVGPETIDSLFDR-----HLIENIDDLYKLTASD------LAQLPNFKEKSINNLLASI 506 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + ++ R ++ +GIR+VG A++LA+++ S AQ + L +P Sbjct: 507 EQSKSRPFARLLYGIGIRYVGEGTAKTLARHFQSIDRLAQATD----------YELQALP 556 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTL 658 VG IA+ +V F+ RN + L + R E+ + +E +++V +G+ Sbjct: 557 DVGPKIAEQVVYFFSLERNQQLIAELQRCGVILEERSEETTDAPQSNLLEGERIVISGSF 616 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717 + R + ++ + Q G V +S +T +++G + G SK KA+QLG+ ++ EE+FL Sbjct: 617 TQHSRDEYKQLIEQHGGVNVGSISGRTTFVLMGSDMGPSKRAKAEQLGIPLVTEEEFLAR 676 Query: 718 LQ 719 L Sbjct: 677 LN 678 >gi|269303032|gb|ACZ33132.1| DNA ligase, NAD-dependent [Chlamydophila pneumoniae LPCoLN] Length = 662 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 226/708 (31%), Positives = 373/708 (52%), Gaps = 50/708 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E ++ +L +E+ HD YY +P I D EYD R+ I + P+ Sbjct: 1 MKEENSQAHYLALCRELEDHDYSYYVLHRPRISDYEYDMKLRKLLEIERSHPEWKVLW-- 58 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P ++G + + V+H P LS+ ++ E+L +F +R+ + +T+E Sbjct: 59 -SPSTRLGDRPSGTFSVVSHKEPMLSIANSYSKEELSEFFSRVEKSLGTSP----RYTVE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG + IRYE V A RG+G GED++ IR I ++P L + PE IEVRGEV Sbjct: 114 LKIDGIAVAIRYEDRVLVQALSRGNGKQGEDITLNIRTIRSLPLRLPEDAPEFIEVRGEV 173 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 + S + F +N++ + + +ANPRNAA G L+ L+P + R L ++ L + Sbjct: 174 FFSYSTFQTINEKQQQLEKTIFANPRNAAGGTLKLLSPQEVAKRKLEISIYNLIAPGDND 233 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + YE LQ+ GFPV+ R +T ++S +++ R++LP +IDG V KVD + Sbjct: 234 S--HYENLQRCLEWGFPVSGKPRLCSTPEEVISVLKTIETERASLPMEIDGAVIKVDSLA 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+ LG + RW +++K+A ++A T L DI +Q+GRTG+LTPVA+L PV + G+L++ Sbjct: 292 SQRVLGATGKHYRWALAYKYAPEEAETLLEDILVQVGRTGVLTPVAKLTPVLLSGSLVSR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+L+NED I +DIR+GD V V + GEVIPKVV + +R ++ ++ Sbjct: 352 ASLYNEDEIHR-----------KDIRIGDTVCVAKGGEVIPKVVRVCREKRPEGSEVWNM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P FCP+C S VVR+ + + + C A +E+++ FV R A NI+ LG + Sbjct: 401 PEFCPVCHSHVVREEDRVSVR-------CVNPECVAGAIEKIRFFVGRGALNIDHLGVKV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ + AD+F L I G + S N+ +SI + +++ L Sbjct: 454 ITKLFE----LGLVHTCADLFQLTTEDLM------QIPGIRERSARNILESIEQAKHVDL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +RF+ +LGI +G +A LA ++ + + L+ + VG+ +A Sbjct: 504 DRFLVALGIPLIGIGVATVLAGHFETLDRVISAT----------FEELLSLEGVGEKVAH 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 AI E++ + ++ ++ + H S K V TGTL+ + R A+ + Sbjct: 554 AIAEYFSDSTHLNEIKKMQDLGVCISPYH--KSGSTCFGKAFVITGTLEGMSRLDAETAI 611 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G V + +S++TD +++G+NPGSKLEKA++LGV I+++E F L+ Sbjct: 612 RNCGGKVGSSVSKQTDYLVMGNNPGSKLEKARKLGVSILDQEAFTNLI 659 >gi|290580089|ref|YP_003484481.1| DNA ligase [Streptococcus mutans NN2025] gi|254996988|dbj|BAH87589.1| DNA ligase [Streptococcus mutans NN2025] Length = 652 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 219/701 (31%), Positives = 343/701 (48%), Gaps = 51/701 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ ++ L Q ++ + YY P + D+EYD L R + FP+ S N P ++ Sbjct: 2 KERMNELVQLLNQYAREYYTKDNPSVSDAEYDKLYRELVELEKEFPEDILS---NSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + K H P SL+ ++ E+L F RI + + E KIDG Sbjct: 59 VGDLVLDGFEKYRHEYPLFSLQDAFSREELNAFDRRIK-----AEFPQADYLAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y G+ A RGDG GE+++ ++ + IP L NI + VRGE Y+ K Sbjct: 114 SISLTYVNGRLRVGATRGDGTVGENITENLKRVRDIPLHLPENI--DLTVRGECYLPKAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +N E G +ANPRNAA+G LR+L+ + + A Q + Sbjct: 172 FKTINAERRENGETEFANPRNAAAGTLRQLDTKVV-AKRKLATFIYQEAGPTAASSQEAV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+ LGF VN +++ I + ++ R+ L YDIDG+V KV+ +LQ+ LG Sbjct: 231 LESFAKLGFTVNPRHIISSSMDAIWQFIEDVAKERAELAYDIDGVVIKVNSLALQEALGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ + +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKTAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+ ++ N+R P P+ CP C Sbjct: 351 YI-----------AEKDIRIGDIVVVYKAGDIIPAVLHVVENKR-DQQVPLPIPTVCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 QS ++ + A RC C AQ E L HF SRDA NI GLG ++ F + Sbjct: 399 QSELIHFEDE------VALRCVNPR-CPAQLKEELIHFASRDAMNIIGLGPAIVEKLFTA 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 E I ADI+ L + G + S T LY +I + S E+ +F L Sbjct: 452 E----LICDVADIYQLTPENLM------QLEGIKEKSATKLYKAIQASKANSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG++ +R L + + S + A + IA + +G +IA+++ ++ Sbjct: 502 GIRHVGSKASRLLMERFESLEQLAAADFDDIAAID----------GLGIVIAESLKTYFA 551 Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + L + + + +V TG L + R +A+E + LGA Sbjct: 552 TAGAQKLLIELKTAGLNLTYLGKKTASDAALTGMTIVLTGKLANLTRSQAKEKLQSLGAN 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V +S+KT ++I G + GSKLEKA+ LG++I +E L Sbjct: 612 VVGSVSKKTSLVIAGSDAGSKLEKAKTLGIEIKDEAWLESL 652 >gi|116511279|ref|YP_808495.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. cremoris SK11] gi|122940331|sp|Q031P9|DNLJ_LACLS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116106933|gb|ABJ72073.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. cremoris SK11] Length = 686 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 217/733 (29%), Positives = 346/733 (47%), Gaps = 81/733 (11%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++ +++ YY +P + DSEYD L + P L R+ + P + Sbjct: 3 IESKIKEFTDQLNQFAYEYYTLDEPSVEDSEYDRLYHELVKLEQENPQLVRA---DSPTH 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 GG + K H SL +++ E+L + R+ + + + + E KIDG Sbjct: 60 WTGGVILDGFVKFRHPYNLYSLGDVFSREELALWEERVRK-----EIVNPEYICELKIDG 114 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 +++ YE G V AA RGDG +GE+++ ++ I +P L I I VRGE Y+ + Sbjct: 115 LSLSLYYENGLLVTAATRGDGTTGENITENVKRIKDVPLKLKEAI--DIVVRGEAYLPRQ 172 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 +F LN E G P+ANPRNAA+G LR+L+ + + S Q E Sbjct: 173 NFAKLNAERELAGAAPFANPRNAAAGTLRQLDTKIV-AKRGLATFLYQEASPATNDTQEE 231 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L+ LGF VN + A I + E +R LPYDIDG+V KV+ + Q++LG Sbjct: 232 VLEYFEELGFQVNPERKFARNLDEIWEFIEEATRLRDELPYDIDGVVIKVNNLAEQEELG 291 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++PRW I++KF +QA T +L +D +GRTG++TP A + PV + + ATLHN Sbjct: 292 FTVKAPRWAIAYKFPAEQAETEILSVDWTVGRTGVVTPTANMTPVLLAQTTVARATLHNV 351 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP------------- 423 DYI+ +DIR D+V++ +AG++IPKV +++ +R P Sbjct: 352 DYIQ-----------EKDIRNHDKVMIYKAGDIIPKVGKVLLEKRKPAKHLRKTHRANKY 400 Query: 424 -------------------DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLAC 464 + P+ CP C S ++ + A RC L C Sbjct: 401 VWTRFGRRSVEKGLVFSKREDNRVKIPTQCPECDSDLIHFEDE------VALRCVNPL-C 453 Query: 465 SAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI 524 AQ E+L HF SRDA NI GLG + F + + AD++ L + Sbjct: 454 PAQIREKLIHFASRDAMNIVGLGPSVISQLFDKK----LVTDVADLYQLTVEDLLT---- 505 Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 + + + +I + R S E+ +F LGIRHVG + A+ L + + + + +Q Sbjct: 506 --LDKVKETLAQKIVSAIAQSRENSAEKLLFGLGIRHVGGKAAKLLLERFANLRALSQAS 563 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 + +P +G +IA A+V +++ ++ L NV Sbjct: 564 E----------EEISEIPSLGGVIATAVVSYFETAGAKTLLDELENAGLNFAYLGAVNVE 613 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 + K +V TG L ++R +A+E + LGA VS +S+KTD+++ G+ GSKL KAQ L Sbjct: 614 GILSGKTVVLTGKLTTLKRKEAKEKLEALGANVSGSVSKKTDLVVAGEEAGSKLTKAQDL 673 Query: 705 GVKIMNEEQFLFL 717 G++I +E+ L L Sbjct: 674 GIEIWSEQDLLDL 686 >gi|332970926|gb|EGK09901.1| NAD-dependent DNA ligase LigA [Kingella kingae ATCC 23330] Length = 785 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 252/814 (30%), Positives = 381/814 (46%), Gaps = 137/814 (16%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S Q + ++ L + ++ + YY P + DSEYD L R + + FP P Sbjct: 1 MSNTQIQNQIKHLTEILNRYAHEYYTLDAPSVPDSEYDKLYRELEQLERDFPYF---RLP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI---------EDLRKFITRIYRFWQKKD 122 P N++GG + V H++P LSL ++ + F R+ + + Sbjct: 58 ESPTNRVGGAILSEFASVRHAVPMLSLNNAFSPRDESGAYDHAETLAFNERVCKDLNQA- 116 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI- 181 +T+EPK DG +++ Y+ G F+ AA RGDG GEDV+ I+ + IP L Sbjct: 117 --QTEYTIEPKFDGLAVSLLYQNGIFIQAATRGDGTIGEDVTENIKTVRNIPLKLHGKNI 174 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFV 240 P +IEVRGEV + K DF LN A G+KP+ANPRNAA+G LR+LN R L+FF Sbjct: 175 PNLIEVRGEVLMLKADFATLNARQEAAGQKPFANPRNAAAGSLRQLNSRVAAERKLHFFG 234 Query: 241 HGLGK--TSEIFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 +G+ + E + E L ++ LGF ++ Y ++ R LPY Sbjct: 235 YGIARLDGVENPPQTHAEELLWLQELGFSLPTGNWHICANIAEVLQQYEQLAEKRPNLPY 294 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 +IDG+V KV+ Q++LG +R+PRW I+HKF ++A T + ID+Q+GRTG +TPVAR Sbjct: 295 EIDGMVIKVNSLIEQEKLGFVSRAPRWAIAHKFPAEEAITIVEAIDVQVGRTGAITPVAR 354 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 L+PV +GG ++TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV ++ Sbjct: 355 LQPVAVGGVVVTNATLHNQDEVAR-----------KDVRVGDSVIVRRAGDVIPEVVRVV 403 Query: 418 VNERH----------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461 + R P F P CP+C S + R+ A RC+GG Sbjct: 404 LERRPMVQELGADLFSETVEKPKFSAFRLPELCPVCNSPIEREDGE------AVARCSGG 457 Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521 + C AQ+ + L HF +R A +I GLG +Q++ + + + ADI+ L Sbjct: 458 MLCQAQRAQGLIHFSARKAMDIVGLGDRQIEALVEQD----VLHSFADIYQL---DIAKL 510 Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 KI++ N+ I R L RF+F+LGIRHVG A+ LA + Sbjct: 511 QKIKDSKSSATKWAENILTGIENSRKPLLSRFLFALGIRHVGESTAKQLANAFGDLATVR 570 Query: 582 QEINNIIA--------------------HNNDDWLSLIRV-------------------- 601 I+A L+ V Sbjct: 571 HAPEPILACLPDIGGVVAQSIAHYFRQPAQQKLLDDLLAVGVEPQHAVLSTNVREFATPA 630 Query: 602 --------PLVGDIIAQAIVEF-----------------YQNPRNICAVEALLKEVSPSI 636 + + AQ + + +QN NI ALL+EV + Sbjct: 631 RWISRLPNYKISEKRAQELWDLAGGSVEGLLSDKVLPIEWQNWCNIAENAALLREVGEFL 690 Query: 637 GRHEK------------NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684 + ++++ I K V TGTL ++R +A + G VS +S+K Sbjct: 691 AMLPEFGATNAENAVLGSLNNLIAGKTFVLTGTLPTLKRDEAAAMIEAAGGKVSGSVSKK 750 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 TD ++ GD GSKLEKA LGV +++E++FL +L Sbjct: 751 TDFVVAGDAAGSKLEKALSLGVAVLSEDEFLAML 784 >gi|58696662|ref|ZP_00372215.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila simulans] gi|58537163|gb|EAL60267.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila simulans] Length = 656 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 267/697 (38%), Positives = 395/697 (56%), Gaps = 49/697 (7%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 L+ +I+YH+ Y+Q +KP I D+EYD LK++ I P++ +++ +G Sbjct: 3 EKLQDQINYHNVLYHQKNKPEISDAEYDELKKKLAEIE---PEIYATQES------VGAP 53 Query: 82 MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141 + KV H P LSLE ++ + + KF+++I RF + + I EPKIDG + Sbjct: 54 PDERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFLIE---DKIEILCEPKIDGLSFSA 110 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201 YE G+FV AA RGDG GEDV+ + I P+ L +EVRGE+YIS +DFL L Sbjct: 111 IYEDGRFVKAATRGDGFVGEDVTHNVATIKGFPKFLQGV-QGRLEVRGEIYISNSDFLKL 169 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 N+ +ANPRNAA+G L++L+ + K Q E+L K+ Sbjct: 170 NEN------DEFANPRNAAAGSLKQLDANITASRP--LRYFAYSLIGGAEKSQSEVLNKL 221 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 LGF VN ++ G++ +YNE+ + R L YDIDG+VYKV++ LQ +LG ++ Sbjct: 222 EALGFCVNEHQSLTSSLDGMLKFYNEVYNCRYNLDYDIDGIVYKVNDLVLQNRLGNTHKA 281 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PR +++KF+ A T+L I IQ+GRTG+LTPVA L PVNIGG L++ A+LHN+D IK Sbjct: 282 PRSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVNIGGVLVSRASLHNQDEIKR 341 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +DIR GD V +KRAG+VIP++V++ + R P+ F FP CP C S+V Sbjct: 342 -----------KDIREGDIVTIKRAGDVIPQIVEVSRDSRLPNTPEFVFPEVCPECGSKV 390 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 + AA RC AC AQ +E+LKHFVS+DAF+I GLG +Q++FF+ Sbjct: 391 RQVEGE------AAVRCPEEFACKAQIIEKLKHFVSKDAFDIVGLGDKQIEFFYD----L 440 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 I+ DIFTL+ R +E G+G S+ +L ++I RR I+L+RFIFSLGIR Sbjct: 441 GLIKQIPDIFTLEERL--DEFNLEEQSGWGKKSIAHLLNAIQSRRVITLDRFIFSLGIRF 498 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 +G A LA YY+SY N+ + + + D L+ + +G +A+++ F+ N Sbjct: 499 IGQVAAELLADYYVSYDNWYNSMIEL----SSDNTELVGIDGIGKKVAESLESFFSKEHN 554 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I + L + + S K +VFTG L + R +A+ LGA VS+ L Sbjct: 555 IKMLNDLTACLQILPVSSNSSNSVLNN-KIIVFTGKLLAMSRGEAKVRAKTLGAKVSSHL 613 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 S KTD +I G+ PGSK +KA +LGV+I++E+Q+ ++ Sbjct: 614 SAKTDYLIAGEKPGSKYKKAVELGVEILDEDQWHKVI 650 >gi|225630391|ref|YP_002727182.1| DNA ligase [Wolbachia sp. wRi] gi|254782311|sp|C0R399|DNLJ_WOLWR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|225592372|gb|ACN95391.1| DNA ligase [Wolbachia sp. wRi] Length = 662 Score = 473 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 267/697 (38%), Positives = 395/697 (56%), Gaps = 49/697 (7%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 L+ +I+YH+ Y+Q +KP I D+EYD LK++ I P++ +++ +G Sbjct: 9 EKLQDQINYHNVLYHQKNKPEISDAEYDELKKKLAEIE---PEIYATQES------VGAP 59 Query: 82 MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141 + KV H P LSLE ++ + + KF+++I RF + + I EPKIDG + Sbjct: 60 PDERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFLIE---DKIEILCEPKIDGLSFSA 116 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201 YE G+FV AA RGDG GEDV+ + I P+ L +EVRGE+YIS +DFL L Sbjct: 117 IYEDGRFVKAATRGDGFVGEDVTHNVATIKGFPKFLQGV-QGRLEVRGEIYISNSDFLKL 175 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 N+ +ANPRNAA+G L++L+ + K Q E+L K+ Sbjct: 176 NEN------DEFANPRNAAAGSLKQLDANITASRP--LRYFAYSLIGGAEKSQSEVLNKL 227 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 LGF VN ++ G++ +YNE+ + R L YDIDG+VYKV++ LQ +LG ++ Sbjct: 228 EALGFCVNEHQSLTSSLDGMLKFYNEVYNCRYNLDYDIDGIVYKVNDLVLQNRLGNTHKA 287 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PR +++KF+ A T+L I IQ+GRTG+LTPVA L PVNIGG L++ A+LHN+D IK Sbjct: 288 PRSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVNIGGVLVSRASLHNQDEIKR 347 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +DIR GD V +KRAG+VIP++V++ + R P+ F FP CP C S+V Sbjct: 348 -----------KDIREGDIVTIKRAGDVIPQIVEVSRDSRLPNTPEFVFPEVCPECGSKV 396 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 + AA RC AC AQ +E+LKHFVS+DAF+I GLG +Q++FF+ Sbjct: 397 RQVEGE------AAVRCPEEFACKAQIIEKLKHFVSKDAFDIVGLGDKQIEFFYD----L 446 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 I+ DIFTL+ R +E G+G S+ +L ++I RR I+L+RFIFSLGIR Sbjct: 447 GLIKQIPDIFTLEERL--DEFNLEEQSGWGKKSIAHLLNAIQSRRVITLDRFIFSLGIRF 504 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 +G A LA YY+SY N+ + + + D L+ + +G +A+++ F+ N Sbjct: 505 IGQVAAELLADYYVSYDNWYNSMIEL----SSDNTELVGIDGIGKKVAESLESFFSKEHN 560 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I + L + + S K +VFTG L + R +A+ LGA VS+ L Sbjct: 561 IKMLNDLTACLQILPVSSNSSNSVLNN-KIIVFTGKLLAMSRGEAKVRAKTLGAKVSSHL 619 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 S KTD +I G+ PGSK +KA +LGV+I++E+Q+ ++ Sbjct: 620 SAKTDYLIAGEKPGSKYKKAVELGVEILDEDQWHKVI 656 >gi|187932891|ref|YP_001884644.1| NAD-dependent DNA ligase LigA [Clostridium botulinum B str. Eklund 17B] gi|254781292|sp|B2TIZ7|DNLJ_CLOBB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|187721044|gb|ACD22265.1| DNA ligase, NAD-dependent [Clostridium botulinum B str. Eklund 17B] Length = 667 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 203/716 (28%), Positives = 354/716 (49%), Gaps = 56/716 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + + L + ++ + YY P + D +YD + P Sbjct: 1 MVDKIERIKELVEILNKYSYDYYVLDNPSVSDKDYDKEYDELKLLEKE----TGFVLPYS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK-----KDDNSIFF 128 P +IG + K TH SL+K ++++++ + R +F + +D + + Sbjct: 57 PTLRIGDVVLQGFNKYTHKGKLWSLDKAQSLDEIKDWHNRNIKFVNEMRAQGEDLPDLKY 116 Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 K DG + + Y + G +A RG+G GE+V++ ++ I +IP L N ++ EV Sbjct: 117 IATKKFDGLTVNLTYNKGGMLEVSATRGNGEIGENVTSQVKTIKSIPLKLQEN-DDLFEV 175 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT 246 GE +++ F N P N RN A+G LR LN + R L+ F + +G Sbjct: 176 HGEAIMTQEAFEKYNASA----DIPLKNLRNGAAGALRNLNIKETARRDLSAFFYDVGYK 231 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 K EM+ ++ G P++ ++ + I ++ IR L YDIDGLV + Sbjct: 232 EGYQFKTYLEMMDFIKEKGLPIDEYLKVCTSIDDIKKEIEYIEKIRFDLNYDIDGLVIAI 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ ++ LG + P+W I++KF ++A+T+LLD++ +GR+G + P A LEPV + G Sbjct: 292 DDIRTRELLGYTVKYPKWAIAYKFEAQEATTKLLDVEWNVGRSGRIGPTAILEPVELAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATL+N D IK + +R+G V V+R+ +VIP+++ + N +++ Sbjct: 352 TVKRATLNNMDDIKR-----------KGVRIGADVFVRRSNDVIPEIMGTLENT-LENSE 399 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ CP C S VV + A + C L+C Q ++ + H+ SRDA NI G Sbjct: 400 EICPPTECPACGSHVVLN--------GAHYFCENTLSCKPQLVKTIVHYASRDAMNIAGF 451 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 ++ + F+ +I+ +D++ L++ + + FG+ NL ++I K + Sbjct: 452 SEKTAEQLFEK----LNIKSISDLYKLKKEDLIN------LEKFGEKKSENLLNAIEKSK 501 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + L FI++LGI +VG + A+ + + S + L+ V VGD Sbjct: 502 DCKLYSFIYALGIPNVGVKTAKDIVNKFKSIDGLKNAT----------FEELVSVQDVGD 551 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I+AQ ++EF++ + I ++ LL I K V S ++K +V TGTLQ R + Sbjct: 552 IVAQDVIEFFKEEKVINTIDELLNLGVNPIFDEVKIVESIFKDKTVVTTGTLQNYSRTEI 611 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + + LGA VS +S+KTD +I G++ GSKL KA++LGVKI++EE+F +L + + Sbjct: 612 KTKLESLGAKVSGSVSKKTDYVIAGESAGSKLTKAEELGVKIISEEEFEKMLGRES 667 >gi|189184847|ref|YP_001938632.1| NAD-dependent DNA ligase LigA [Orientia tsutsugamushi str. Ikeda] gi|254781383|sp|B3CVK1|DNLJ_ORITI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|189181618|dbj|BAG41398.1| DNA ligase [Orientia tsutsugamushi str. Ikeda] Length = 699 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 254/718 (35%), Positives = 413/718 (57%), Gaps = 32/718 (4%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I IE L+ + A+K + L E+ +D YY + P++ D++YD LK + I FP LA Sbjct: 9 INIEQLTSDHAKKIVDFLALELQKYDQAYYSDNNPLVTDAQYDVLKNLNNKIVAKFPHLA 68 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 D K+G + KV H P LSL + +ED+ FIT+I F K D+ Sbjct: 69 LVNDH---SKKVGFTPSAQFSKVVHLKPMLSLANGFCVEDISNFITKIQNFL--KIDHCP 123 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 E KIDG RYE G A+ RGDG GE+++ ++ I + P+ L + ++ E Sbjct: 124 KIVCEYKIDGLSFNARYEYGVLTLASTRGDGQIGENITENLKTIQSFPQTLPIT-DKVFE 182 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGE+YI+ NDF LN + +G+ ++NPRNAA+G +R+L+P R L +FV+ LG+ Sbjct: 183 VRGEIYITNNDFRVLNIQQQKLGKALFSNPRNAAAGSIRQLDPAITAQRPLKYFVYALGE 242 Query: 246 TSEIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + Q+E+LQK+ L F VN ++ H ++ +YN + + R+ L ++IDG+VY Sbjct: 243 VTNHHFASTQFELLQKLSQLKFSVNTDYILSDNLHSMIEFYNNVATERNNLAFEIDGVVY 302 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++F+LQ++LG + SPR+ I++KF T++ +I +Q+G+TG +TPVA L P+NI Sbjct: 303 KVNDFALQERLGATSTSPRFAIAYKFPALIGRTKITNITLQVGKTGAVTPVAWLIPINIA 362 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-P 423 G I+ ATLHN+ I+ +DIR+GD V + RAG+VIPK+ + ++ R Sbjct: 363 GVTISRATLHNKQEIES-----------KDIRIGDYVFLHRAGDVIPKINGVDLSARDTQ 411 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 ++ F FP+ CP C +V + RC LAC AQ ER+ HFVS+DA NI Sbjct: 412 SSERFIFPTTCPSCNQNLVVNEGET------VARCGNSLACQAQIYERICHFVSKDALNI 465 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR-QQTSTTKIENILGFGDVSVTNLYDSI 542 +GLGKQ++ F ++ I DIF L+ + + K+E+I G+G SV L+ +I Sbjct: 466 DGLGKQRIQFLLDNK----YIVNIVDIFLLEENNKFLYSNKLEDIAGWGIKSVNKLFQNI 521 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 N+ +N+ L++FI++L I+HVG A+ LAK + + +NF + + + + + L + Sbjct: 522 NQAKNVILDKFIYALAIKHVGKYSAKLLAKEFKTAKNFINQSLKLANNATEIYEKLRNIE 581 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 VG A + +F+ N+ + L+ ++ ++ + + + N+ +VFTGT + Sbjct: 582 GVGVKTADQLKQFFMVSANVNLITKLVNILTIQDWQYHGD-NLLLSNQTIVFTGTFATVS 640 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R + + +LGA V +S TD+++VG+ G+KL+KAQQLG+KI+NEE+++ ++ + Sbjct: 641 RSEIKVQAEKLGAKVGTQVSNNTDLLVVGNKAGNKLQKAQQLGIKIINEEEWIKMVNE 698 >gi|254456450|ref|ZP_05069879.1| DNA ligase, NAD-dependent [Candidatus Pelagibacter sp. HTCC7211] gi|207083452|gb|EDZ60878.1| DNA ligase, NAD-dependent [Candidatus Pelagibacter sp. HTCC7211] Length = 676 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 257/712 (36%), Positives = 412/712 (57%), Gaps = 43/712 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + ++ +K + ++ ++ YY +KP+I D YD LK ++ + LA + P Sbjct: 1 MDKKEIQKLYQEKIKLLNKYNQYYYDKNKPLIDDKNYDELKISILSLEKKYNFLASKKSP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + G + + + K H +P LSL ++ EDL F +I F + ++ ++++ E Sbjct: 61 SEIT---GYKPSKNFKKSAHKVPMLSLANAFSEEDLINFEKKILNFLSENENFKLYYSAE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190 PKIDG ++ Y+ GKFV RGDG GED+++ + I IP+ + + N PE I++RGE Sbjct: 118 PKIDGISASLTYKNGKFVKGLSRGDGKEGEDITSNLETIKDIPKKISNKNFPEEIDIRGE 177 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEI 249 V+I +DF + +ANPRNAASG LR+ +P D ++ F + G ++ Sbjct: 178 VFIKNSDFENF--------KDKFANPRNAASGSLRQKDPNDTSKIPLKFIAYTFGYEKKL 229 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q++ L+++ GF N + + ++ YNE++ R+ + +DIDG+VYKV+ F Sbjct: 230 NIDNQFDFLKRLNEWGFKTNPLNKLISGVKNLLINYNEIEKKRAEIDFDIDGIVYKVNNF 289 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQK+LG A +PRW ++HKF+ +A ++++ IDIQIGRTG LTPVA+++PVNIGG ++ Sbjct: 290 KLQKRLGNVANAPRWAVAHKFSSNKAVSKIISIDIQIGRTGALTPVAKIKPVNIGGVQVS 349 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNED I +D+RVGD V+V+RAG+VIP ++ + +N+R + F Sbjct: 350 NATLHNEDEIMR-----------KDVRVGDTVVVERAGDVIPHILTVDINKRSKKSIKFV 398 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP C S+ ++ N T K A RCT C +E+LKHFVS++AFNIEGLGK Sbjct: 399 FPKKCPSCGSKTTKEYNEITKKNDAVRRCTSEGYECEKISIEKLKHFVSKEAFNIEGLGK 458 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ F+K + IR+P DIF L +IEN+ G+G +SV NL SIN+++NI Sbjct: 459 KIIENFWKLK----LIRLPQDIFRL------DYNRIENLEGWGRLSVENLKYSINEKKNI 508 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SLER I++LGIRH+G E A+ L+K++ ++ NF + N ++ L+ V +G+ Sbjct: 509 SLERLIYALGIRHIGLENAKLLSKFFKTFSNFKELSNK------SNYNDLLNVDKIGETQ 562 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 +I F+ N N + L KE+S EK + ++N + TG L I R + + Sbjct: 563 VSSIKSFFSNKINNEIINQLSKELSIKNTLIEKK-NGLLKNYTFMITGKLSGISRAEIKS 621 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQ 719 + + + +++K D +I+GD P K+E A++L +KI+N+ QFL +L Sbjct: 622 LIEENSGSTVSSVTKKLDYLIIGDKPTKRKIETAKELRIKIINQSQFLKMLN 673 >gi|309803834|ref|ZP_07697919.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 11V1-d] gi|312870780|ref|ZP_07730886.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 3008A-a] gi|312873110|ref|ZP_07733169.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2062A-h1] gi|308164068|gb|EFO66330.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 11V1-d] gi|311091343|gb|EFQ49728.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2062A-h1] gi|311093656|gb|EFQ51994.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 3008A-a] Length = 672 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 213/718 (29%), Positives = 356/718 (49%), Gaps = 51/718 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + LS+ QA+ E+ L +++ YY P++ D+ YD + ++ + +P L Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 DP+ ++GG L KV H P LS+ +++ ++L +F RI + + + + Sbjct: 59 -DPDSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVG----HVVDY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG +++ Y+ GK V A+ RG+GH GEDV+A I IP+ L I IEVR Sbjct: 114 NVELKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKI--DIEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE Y+ K F LN E G +ANPRNAA+G LR+L+ + Sbjct: 172 GECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPP 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ + M LGF N + ++ + + + ++ + RS L Y IDG+V KVD+ Sbjct: 232 ETITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ +LG + PRW I++KF ++ T + +I +GRTG++TP A ++PVN+ G ++ Sbjct: 292 LALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A LHN D ++ +DIR+GD VL+ +AG++IP++ +++N+R + P+ Sbjct: 352 SRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPY 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C +V + A RC + C AQ E + HF SR A NI GLG Sbjct: 401 EIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVGLGP 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + AD++ L Q + F D S+ NL ++I + Sbjct: 454 KIVRQLI----ALHLVNDIADLYFLSAAQL------AKLDHFKDKSIQNLLNAIENSKQN 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E +F LGI HVGA+ AR +A+ + + L+++ +G I Sbjct: 504 SVELLLFGLGIDHVGAKAARLIAQKFHDLNTIREC----------SIADLMQIDTIGQAI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 A+++V++++ ++ L + + + K +V TG L R Sbjct: 554 AESMVKYFEQQSVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKEKNVVLTGKLAHYSRA 613 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + +T LGA V + +S+ TD +I GD GSK +AQQL + ++ E++ + L Sbjct: 614 DLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVVAKLNSQK 671 >gi|224372650|ref|YP_002607022.1| NAD-dependent DNA ligase LigA [Nautilia profundicola AmH] gi|254781379|sp|B9L8R4|DNLJ_NAUPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|223589900|gb|ACM93636.1| DNA ligase, NAD-dependent [Nautilia profundicola AmH] Length = 656 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 201/703 (28%), Positives = 342/703 (48%), Gaps = 55/703 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + YY P++ D EYD L + PD DP P ++G Sbjct: 8 YKKAVDTLKKWAYYYYVLDNPLVTDEEYDKLYHEVEEYEKKHPDKI---DPTSPTQRVGD 64 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + K H S+E ++N +D ++ R+ R + F +EPK DG + Sbjct: 65 VVLEGFEKAKHLSRMWSMEDVFNEKDFLDWVGRVKRILG---HENFSFYIEPKFDGASLN 121 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + YE GK + A RGDG GEDV+ + I +IP + +IE+RGEV I K+DF Sbjct: 122 LIYENGKLIRAETRGDGEIGEDVTLNAKTINSIPLEIKE--KSLIEIRGEVVIKKDDFDK 179 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259 LN+E + G +ANPRNAA+G LR+L+P R L F+ G+G + + + E++ Sbjct: 180 LNEERLKNGEPTFANPRNAAAGSLRQLDPKITAKRPLIFYPWGVG-VNSLNYERYSELMD 238 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 + LGF + Y+E +R + +DG+V K+DE LG Sbjct: 239 YIYSLGFKEPPKRGVCKDIPCVEKKYDEFVKLRDSFEVMLDGMVVKIDEIKYHDILGYTQ 298 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 + PRWM+++KF + T + D+ +Q+GRTG+LTPVA L+PV IGG ++ ATLHN D I Sbjct: 299 KYPRWMVAYKFPAIEKETIIEDVIVQVGRTGVLTPVAVLKPVEIGGVIVERATLHNFDEI 358 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439 + + DIR+GD V+V R+G+VIPK+ ++ +R D +P P+ CP+C + Sbjct: 359 ERM-----------DIRIGDHVIVIRSGDVIPKITKVLTWKRKGDEKPIPRPTHCPVCGA 407 Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 V+ + A L+C A+ + + +F S++ +IEGLG+ ++ Sbjct: 408 EVLDEG---------ALIKCQNLSCPARVVNTIIYFASKNCLDIEGLGESVAKLLYEH-- 456 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559 ++ D+F L+ E + F NL ++I + + RF+ +LGI Sbjct: 457 --GLVKDVTDLFELKVEDL------EKLPLFARKKAENLVNAIKSKVGVECWRFVNALGI 508 Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 H+G ++ + + + + + + ++I E+ + Sbjct: 509 EHIGEVASKKICEKFG-VEFYKHAPEEFEEIEGFG-----------PEMVKSIAEYIRV- 555 Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 N +E L++ + P ++ + K +V TGT+ K R + ++ + +GA VS+ Sbjct: 556 -NKEKIEKLIEILKPKNPEKKEVQKTPFTGKTVVLTGTMSK-PRSEIKKMLEDMGAKVSS 613 Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 +S+KTD +I G++ GSK +KA++LGV +++E+ +L++ Sbjct: 614 SVSKKTDFVIYGEDAGSKYDKAKKLGVNLLSEDDMWKMLKEGK 656 >gi|148284934|ref|YP_001249024.1| NAD-dependent DNA ligase LigA [Orientia tsutsugamushi str. Boryong] gi|166216222|sp|A5CEY0|DNLJ_ORITB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146740373|emb|CAM80812.1| NAD-dependent DNA ligase [Orientia tsutsugamushi str. Boryong] Length = 698 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 253/718 (35%), Positives = 413/718 (57%), Gaps = 32/718 (4%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I IE L+ + A+K + L E+ +D YY + P++ D++YD LK + I FP LA Sbjct: 9 INIEQLTSDHAKKIVDFLALELQKYDQAYYSDNNPLVTDAQYDVLKNLNNKIVAKFPHLA 68 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 D K+G + KV H P LSL + +ED+ FIT+I F K D+ Sbjct: 69 LVNDH---SKKVGFTPSAQFSKVVHLKPMLSLANGFCVEDISNFITKIQNFL--KIDHCP 123 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 E KIDG RYE G A+ RGDG GE+++ ++ I + P+ L + ++ E Sbjct: 124 KIVCEYKIDGLSFNARYEYGVLTLASTRGDGQIGENITENLKTIQSFPQTLPIT-DKVFE 182 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGE+YI+ NDF LN + +G+ ++NPRNAA+G +R+L+P R L +FV+ LG+ Sbjct: 183 VRGEIYITNNDFRVLNIQQQKLGKALFSNPRNAAAGSIRQLDPAITAQRPLKYFVYALGE 242 Query: 246 TSEIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + Q+E+LQK+ L F VN ++ H ++ +YN + + R+ L ++IDG+VY Sbjct: 243 VTNHHFASTQFELLQKLSQLKFSVNTDYILSDNLHSMIEFYNNVATERNNLAFEIDGVVY 302 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++F+LQ++LG + SPR+ I++KF T++ +I +Q+G+TG +TPVA L P+NI Sbjct: 303 KVNDFALQERLGATSTSPRFAIAYKFPALIGRTKITNITLQVGKTGAVTPVALLIPINIA 362 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP- 423 G I+ ATLHN+ I+ +DIR+GD V + RAG+VIPK+ + ++ R Sbjct: 363 GVTISRATLHNKQEIES-----------KDIRIGDYVFLHRAGDVIPKINGVDLSARDAQ 411 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + F FP+ CP C +V + RC LAC AQ ER+ HFVS+DA NI Sbjct: 412 SSTRFIFPATCPSCNQNLVVNEGET------VARCGNSLACPAQIYERICHFVSKDALNI 465 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR-QQTSTTKIENILGFGDVSVTNLYDSI 542 +GLG+Q++ F ++ I DIF L+ + S+ K+E+I G+G SV L+ +I Sbjct: 466 DGLGRQRIRFLLDNK----YIVNIVDIFLLEENNKLLSSNKLEDIAGWGIKSVNKLFKNI 521 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 N+ +N+ L+RFI++L ++HVG A+ LAK + + +NF + + + + + L + Sbjct: 522 NQAKNVILDRFIYALAVKHVGKYSAKLLAKEFKTAKNFIDQSLKLANNVTEIYEKLCNIE 581 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +G A + +F+ N+ + L+ ++ ++ + + + N+ +VFTGT + Sbjct: 582 GLGVKTADQLKQFFMVSANVNLITKLVNILTIQDWQYHGD-NLLLSNQTIVFTGTFATVS 640 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R + + +LGA V +S TD+++VG+ G+KL+KAQQLG+KI+NEE+++ ++ + Sbjct: 641 RSEIKVQAEKLGAKVGTQVSNNTDLLVVGNKAGNKLQKAQQLGIKIINEEEWIKMVNE 698 >gi|255526475|ref|ZP_05393386.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7] gi|296184848|ref|ZP_06853259.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7] gi|255509857|gb|EET86186.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7] gi|296050630|gb|EFG90053.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7] Length = 669 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 206/716 (28%), Positives = 357/716 (49%), Gaps = 58/716 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +I+ ++++ L +E++ + YY P + D EYD + P Sbjct: 3 TIDTKKEQIEKLVEELNKYAQEYYLLDNPSVSDKEYDLRYDELLKLEKE----TGIILPY 58 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ------KKDDNSI 126 P ++G + K TH SL+K ++ + + R + ++ + Sbjct: 59 SPTQRVGDNILKEFQKYTHKGKLWSLDKSQTVQGIIDWHVRNKKAVDDYNSTHEEKLPQL 118 Query: 127 FFTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + + K DG I Y E G + AA RG G GED++A R I ++P L +N +I Sbjct: 119 EYVITKKFDGLTINCTYDENGILIKAATRGTGEVGEDITAQARTIMSLP--LKINNSNVI 176 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG 244 EV GE +++ F N P N RN A+G LR LN + R L+ F + +G Sbjct: 177 EVHGEAIMTREAFEEYNKSA----AVPLKNLRNGAAGALRNLNIKETARRKLSAFFYDVG 232 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 K +EM+ ++ +GFP++N ++ ++ I + ++ IRS L YDIDG+V Sbjct: 233 YNEGAPFKTYFEMMNFIKNMGFPLDNYIKICSSIEEIENELKYVEEIRSELNYDIDGVVI 292 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 +++ ++ LG + P+W I++KF ++A+T+LLD++ +GR+G +TP A LEPV + Sbjct: 293 AINDMKTREILGYTIKFPKWAIAYKFEAEEATTKLLDVEWNVGRSGRVTPTAILEPVELA 352 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G + ATL+N D IK +++R+G V V+R+ +VIP+++ ++ + Sbjct: 353 GVTVKRATLNNMDDIKR-----------KEVRIGCSVFVRRSNDVIPEIMGVVQDT-LEG 400 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + P CP C S +V+D + C L+C Q ++ + HF SR+A NIE Sbjct: 401 SIEIQAPEKCPYCDSELVQD--------GVHYFCDNTLSCKPQMVKSIVHFGSREAMNIE 452 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G ++ + F+ + I+ D++ +++ + F + NL ++I K Sbjct: 453 GFSEKTAEQLFEKLE----IKSIPDLYRIKKEDLM------QLDKFAEKKAQNLVNAIEK 502 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 +N SL FI++LGI ++G + A L K + S N Q L+ + V Sbjct: 503 SKNCSLASFIYALGIPNIGKKTATDLVKNFKSLDNIIQSSE----------EELVSIQDV 552 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G+I+A++I+EF+ + I ++ LL+ I E+ S +K +V TG+L+ R Sbjct: 553 GEIVAKSIIEFFNEDKIINSINELLELGVKPIFEEEEVSKSLFSDKTVVVTGSLENYTRT 612 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +E + +GA VS +S+KTD ++ G GSK +KA +LGVKI+NEE+F +L + Sbjct: 613 TIKEKLQSVGAKVSGSVSKKTDYVLAGKEAGSKYDKALELGVKIINEEEFEKMLSK 668 >gi|300709542|ref|YP_003735356.1| NAD-dependent DNA ligase LigA [Halalkalicoccus jeotgali B3] gi|299123225|gb|ADJ13564.1| NAD-dependent DNA ligase LigA [Halalkalicoccus jeotgali B3] Length = 703 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 220/727 (30%), Positives = 354/727 (48%), Gaps = 53/727 (7%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 L PI+ L ++A +E L + I +HD YY + P I D YD L +R I +F Sbjct: 17 LTPIDEL--DEAEREARRLREAIRHHDRRYYVENDPEIADRTYDTLFQRLVDIEESF--- 71 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 + P+ P ++GGE L V H P LS+++ + D+R+F R+ R Sbjct: 72 -GLQIPDSPTRRVGGEPVEELETVEHVAPMLSIQQSGDAADVREFAERMDREIG-----E 125 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + +T EPK DG I + Y++G F A RG+G G+DVSA +R I +IP+ L P+ + Sbjct: 126 VTYTCEPKFDGVSIEVVYDEGVFERAVTRGNGREGDDVSANVRTIRSIPQRLRGEYPDFL 185 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245 VRGE+++ ++ F A N E + G +P+ANPRNA +G +R+L+PT Sbjct: 186 AVRGEIFMPRDAFQAYNRERVERGDEPFANPRNATAGTIRQLDPTVTAERPLDCFFYDIL 245 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + +E L + G N+ A ++Y + + R L Y+IDG+V K Sbjct: 246 DASEGIATHWEELDALESYGLQTNDRAELAADIDEAIAYRDRLVEDREGLNYEIDGVVIK 305 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VDE + ++LG +R RW ++KF + T + D+ +Q+GRTG LTPVA L+PV++GG Sbjct: 306 VDEKAACEELGTTSRHYRWAFAYKFPARAGETAIQDVALQVGRTGRLTPVALLDPVDVGG 365 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ A+LHN I+ +++ VGD V V+RAG+VIP V +++ + Sbjct: 366 VTVSRASLHNPAEIE-----------EKEVNVGDVVRVERAGDVIPYVDEVVEKR---SS 411 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 F FP+ CP+C S + + CTGGLAC AQ ++++ S +IEG Sbjct: 412 GYFEFPATCPVCDSAI--------ERDGPIAFCTGGLACPAQLRRSVEYYASDSGLDIEG 463 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG +++D ++ AD++ L+R + G+G S NL + Sbjct: 464 LGGERVDQLLEA---GLVEESVADLYRLERADLV------ELEGWGQKSAENLLAELEAS 514 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 ++ L F+ ++GI HVG AR LA + L V +G Sbjct: 515 KSPPLFAFLAAIGIPHVGRATARELAGAFGDLDGLMDASE----------DELREVDEIG 564 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +++A+ I +F+ + N + L + ++ + +VFTG+L R + Sbjct: 565 EVVAREIRDFFDSEGNRRVLRELREAGVEPERAEDRESGDTLSGLTVVFTGSLPDRTRSE 624 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 AQ + G V+ +S TD ++VG+NPG SK E A GV + E+F L+ + Sbjct: 625 AQGLIEGAGGSVTGSVSGNTDYLVVGENPGSSKREDAADEGVPELTPEEFEALVDESEEA 684 Query: 725 LRIHDDD 731 R + Sbjct: 685 DRQEQQE 691 >gi|262037707|ref|ZP_06011149.1| DNA ligase (NAD(+)) [Leptotrichia goodfellowii F0264] gi|261748179|gb|EEY35576.1| DNA ligase (NAD(+)) [Leptotrichia goodfellowii F0264] Length = 697 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 217/718 (30%), Positives = 366/718 (50%), Gaps = 60/718 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG----- 73 +E L ++I ++ YY +P+I D EYD L ++ I P+L Sbjct: 16 EEYKKLREDIERYNRYYYDEDRPLISDKEYDDLIKKLQKIEEKNPELKNIYTVFSKDNSD 75 Query: 74 -----------PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P KIGG + KV HS+P LSL +NI ++ F R + Sbjct: 76 ISDIEENPEITPTEKIGGTASEKFSKVVHSVPMLSLSNTYNISEIEDFDQRARKITGL-- 133 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 D + + LE K+DG I++ YEKG F A RGDG GEDV+ +R I ++P+ L +I Sbjct: 134 DKKLEYILELKLDGLSISLIYEKGMFKQAITRGDGQIGEDVTENVREISSVPKKLKDSI- 192 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVH 241 +EVRGE+ + ++F +N+ G +ANPRNAA+G +R+L+ + R L+ +++ Sbjct: 193 -DVEVRGEIVLPISNFNKVNEIREEAGEDVFANPRNAAAGTIRQLDSSIVKDRGLDCYLY 251 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 L K E ++ ++ LGF + + F + + R L Y+ DG Sbjct: 252 YLVNPERYEIKTHLESMEFIKKLGFKTTDIFEKYTDFKELEKSIEKWHDEREKLDYETDG 311 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 LV KV++FS +LG +SPRW I++KF +Q T+LLD+ Q+GRTG++TPVA LEPV Sbjct: 312 LVIKVNDFSYYNELGYTTKSPRWAIAYKFPAEQVKTKLLDVTFQVGRTGVITPVAELEPV 371 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G+++ A+LHN D I+ ++I++GD V++++A E+IP+VV+++ +R Sbjct: 372 TLSGSVVKRASLHNFDEIER-----------KEIKIGDNVIIEKAAEIIPQVVNVVFEDR 420 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 + P+ CP+C S +V++ K C + +++FVSRDA Sbjct: 421 TGKEREIEKPTNCPVCGSELVKEEGQVALK-------CLNPVCPEKVKREIEYFVSRDAM 473 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 NI GLG++ ++ F + I+ DI++L+ ++ ++EN+ G SV NL ++ Sbjct: 474 NISGLGEKIVEKFIE----LGKIKTVVDIYSLKDYRE----ELENLEKMGKKSVDNLINN 525 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I + +N + ++SLGI VG A L K + + +N N + L+++ Sbjct: 526 IEESKNRGFNKVLYSLGIPFVGKFTANLLVKNFKNIENL----------KNSEIEELLQI 575 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTL 658 VG+ +A ++ + N N + L + + I+ K + TG L Sbjct: 576 KGVGEKVAISVHNYLNNEDNWGKINDLKGRGLNFSLENAEEIEIEDNPIKGKNFLATGKL 635 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +K +R + +E + G + +S+ D +I G+ GSKLEKA++L V+++ EE+F Sbjct: 636 EKYKREEIKEIILSKGGNYLSGVSKNLDFLIAGEKAGSKLEKAEKLNVRVLTEEEFER 693 >gi|152990877|ref|YP_001356599.1| NAD-dependent DNA ligase LigA [Nitratiruptor sp. SB155-2] gi|166216219|sp|A6Q433|DNLJ_NITSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|151422738|dbj|BAF70242.1| DNA ligase, NAD-dependent [Nitratiruptor sp. SB155-2] Length = 660 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 221/708 (31%), Positives = 352/708 (49%), Gaps = 56/708 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +E +++ YY P + D YD L R + A PD DP P +I Sbjct: 6 QEYKEAVEKLKRWAYAYYVLDNPEVPDEVYDKLYREVEEYEKAHPDQI---DPTSPTQRI 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G E K+ H S+E ++N ++ +++ R+Y+ +KD + F +EPK DG Sbjct: 63 GAEPAKEFKKIKHLSKMWSMEDVFNQREMHEWLERVYKNAGRKD---LQFYIEPKFDGAS 119 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + + YE G AA RGDG GEDV+A + IP+IP L ++ +IE+RGEV I K+DF Sbjct: 120 LNLIYENGLLKSAATRGDGEVGEDVTANAKTIPSIP--LGIDYKGLIEIRGEVVIRKDDF 177 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257 LN E G +ANPRNAA+G LR+L+P R L F+ +G + + K Q+E Sbjct: 178 EKLNHERALKGESTFANPRNAAAGSLRQLDPKVTAQRKLYFYPWDIGY-NTLNFKYQHEK 236 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 + + GF I Y E R LP +DG+V KVDE +L + LG Sbjct: 237 MDFVYQQGFIKPFKRAICENEEEIQQLYEEFSKERDKLPVMLDGMVVKVDEIALHEILGY 296 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 + PRWM+++KF + TR++DI Q+GRTG++TPVA LEPV I G ++ ATLHN Sbjct: 297 TVKYPRWMVAYKFPAVEKMTRIIDIVPQVGRTGVITPVAILEPVEIEGVVVERATLHNYA 356 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ +DIR+GD V+V R+G+VIP+V ++ R + P CP+C Sbjct: 357 EIER-----------KDIRIGDMVIVIRSGDVIPEVTKVLTQYRTGKEKKVERPKVCPVC 405 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 V+ + L+C A+ + + +F S+ +I GLG+ + ++ Sbjct: 406 GQPVLDEG---------ILIKCQNLSCPARVVNSIIYFASKQCLDISGLGEATVKLLYEK 456 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 ++ D+F L++ + + GF + NL D+ + + RF+ +L Sbjct: 457 ----GLVKDVVDLFKLKKED------LLRLPGFAEKKAQNLIDATQSVKGVECWRFVNAL 506 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI H+G ++ L + + + L + G + ++I EF Sbjct: 507 GIEHIGEVASKKLCEKFG------------LDWYKAPKEKLYEIEGFGPEMVRSIEEF-- 552 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 N +E L++ + P+ + E+ V +S + +K +V TG + K+ R K +E + + GA Sbjct: 553 VEVNKEKIEKLIELLQPTEPKKEEEVENSPLAHKTVVLTGEM-KLPRSKIKELLERAGAH 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 V+ +S TD + G+NPGSK +KAQQLGV ++ EE+ LL++ Sbjct: 612 VTNSVSHHTDYVFYGENPGSKFQKAQQLGVPLLPEEKMWELLKEAGIE 659 >gi|237738042|ref|ZP_04568523.1| NAD-dependent DNA ligase [Fusobacterium mortiferum ATCC 9817] gi|229419922|gb|EEO34969.1| NAD-dependent DNA ligase [Fusobacterium mortiferum ATCC 9817] Length = 663 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 213/705 (30%), Positives = 347/705 (49%), Gaps = 50/705 (7%) Query: 25 EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84 ++I + D YY ++ +I D E+D L + +P+ N P +G Sbjct: 2 REKIKKYSDYYYTNNESLISDVEFDKLLVELKELEEKYPEYKEK---NSPTEIVGATSLK 58 Query: 85 --SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 KV H P LSL +N D+ FI R+ + ++ + + + LE K+DG ++I+ Sbjct: 59 ETKFQKVAHKKPMLSLSNSYNEGDISDFIERVKKLLPEEKN--LAYALELKLDGLSLSIQ 116 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 YE+GK V A RGDG GEDV+ I I +IP++L + IE+RGEV + + F LN Sbjct: 117 YEEGKLVRAVTRGDGTVGEDVTENILEIESIPKILKEKVS--IEIRGEVVLPLSKFEELN 174 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEMLQKM 261 + + G + +ANPRNAA+G LR+L+ + I L+ + + L K E ++ + Sbjct: 175 KKRMENGEEVFANPRNAAAGTLRQLDSSIIKERGLDAYFYFLVDAQNYGVKTHSESIEYL 234 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 LG ++S R +L Y+ DG+V KVD L +LG +S Sbjct: 235 AKLGIKTTGVCEVLKNSSELISRIEYWGEKRESLDYETDGMVIKVDNIELWDKLGNTTKS 294 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW I+ KF KQ +T++L + Q+GRTG +TPVA LE V + G+ + A+LHN I+ Sbjct: 295 PRWAIAFKFPAKQVTTKILGVTWQVGRTGKVTPVAELEEVELSGSRVKRASLHNYQEIER 354 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +DIR+GD V +++A E+IP+VV + R + P+ CPIC ++V Sbjct: 355 -----------KDIRIGDSVFIEKAAEIIPQVVKAVKELRDGNEIIIKEPTHCPICNTKV 403 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 R+ + ++C + L +FVSRDA NI G G + ++ + Sbjct: 404 EREEGQVDIR-------CPNISCPGKIEGELIYFVSRDAMNIAGFGSKIVENMLR----L 452 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 I+ DI+ L+ ++ ++E + G SV NL +I + + + +LGI Sbjct: 453 GFIKNIVDIYELKNHRE----ELEKLEKMGKKSVDNLLTAIENSKTREYSKVLCALGIPF 508 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 VG A+ LA + + L+ + +GD +AQAI +F+++ Sbjct: 509 VGKTSAKLLADSSGNIDKLM----------SMSVEELMEIEGIGDKMAQAIFDFFRDEEK 558 Query: 622 ICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 +E L I ++ K +FTGTLQ R++ +E + +LG Sbjct: 559 KKLIEGLKAHGLTFIQERKEELPAEEKVFTGKTFLFTGTLQNFTRNEIKEEIEKLGGKNL 618 Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQYN 722 + +S+ D +IVG+ GSKL+KAQ+LG VKI+ EE+F+ + + + Sbjct: 619 SAVSKNLDYLIVGEKAGSKLKKAQELGTVKIITEEEFMKICGKKS 663 >gi|296273134|ref|YP_003655765.1| DNA ligase, NAD-dependent [Arcobacter nitrofigilis DSM 7299] gi|296097308|gb|ADG93258.1| DNA ligase, NAD-dependent [Arcobacter nitrofigilis DSM 7299] Length = 648 Score = 470 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 210/702 (29%), Positives = 357/702 (50%), Gaps = 57/702 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + E + + YY P D EYD L R C A P L+ PN P + Sbjct: 3 QNEYNEKINILISWAIAYYVEDNPQASDEEYDKLSRECLAYEQENPSLSH---PNSPNKR 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H S E ++N +L +I R + + ++ F EPK DG Sbjct: 60 VGGFVLEGFEKAAHLSRMWSQEDVFNTVELEDWIKRAQKV-----NTNLEFYCEPKFDGA 114 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G A RGDG GEDV+ ++ I +IP + +IE+RGE+ I K D Sbjct: 115 SLNLIYENGVLKQAITRGDGSIGEDVTNNVKTIHSIPLQIKEQS--LIEIRGEIVIKKAD 172 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N+E G + +ANPRNAA+G LR+L+PT R L F V G+G+ + E Sbjct: 173 FEKINEERAKNGEQLFANPRNAAAGSLRQLDPTVTAKRKLFFNVWGIGQ-HSLDFTKHSE 231 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 M++ + LGF + T GI Y+++ + R+++ +DG+V K+++ Q++LG Sbjct: 232 MMEYVYSLGFVHPPMTTKTTTVEGIEELYHKIIASRNSITMMLDGMVIKINDIETQEELG 291 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + PRW ++KF + +T + DI Q+GRTG++TPVA +EP I G+ + A+LHN Sbjct: 292 YTVKFPRWSCAYKFPAVEKTTTIKDIIQQVGRTGVITPVAVVEPTLIDGSTVERASLHNY 351 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I L D+R+ D+V++ ++G++IPK+ + V R + + P+ CP Sbjct: 352 DEIARL-----------DLRINDQVIIIKSGDIIPKITKVFVERRDGTQEKITRPTLCPK 400 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C+S ++ + L C A + + +F S++ NI+GLG + ++ + Sbjct: 401 CRSELLDEGTLIK---------CQNLDCPAIIVNSIIYFASKNCMNIDGLGNKIVETLVR 451 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + I D+++L+ EN+ GF + + NL ++I K + SL R I + Sbjct: 452 EKK----IYDILDLYSLKYEDL------ENLEGFKEKKINNLLNAIEKTKANSLHRVINA 501 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI H+G ++ + + + N D+ SL+ + +G+ +A + VEF Sbjct: 502 LGIEHIGEVASKQICLEFG------------LDVVNIDFDSLVALDGIGEQMANSFVEFM 549 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + N V L+ ++P++ + + + K +V TGT+ + R + ++ + LGA Sbjct: 550 RV--NEELVSKLIATINPTVEEKIEVSENAFKGKTVVITGTMS-VSRGEVKKQLEALGAK 606 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 VS+ +S+KTD +I G++ GSK +KA +L VK +NEE+ ++ Sbjct: 607 VSSSVSKKTDYVIYGEDAGSKYDKAIELNVKTINEEEMNNMI 648 >gi|82523684|emb|CAI78466.1| NAD-dependent DNA ligase [uncultured candidate division WS3 bacterium] Length = 667 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 228/704 (32%), Positives = 353/704 (50%), Gaps = 46/704 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 AR ++ L + I +HD YY + P I D EYDAL A+ P+L + + P Sbjct: 7 ARARVAELRELIRHHDRKYYVDAAPEIADGEYDALMSELAALEREHPELVTA---DSPTR 63 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++ G + V H++P LSLE ++ E+L F R+ + + + +EPK+DG Sbjct: 64 RVAGAPSDGFSTVEHAVPMLSLENTYSPEELVAFDARVRKGL---PGEPVEYVVEPKLDG 120 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISK 195 I++RY +G A RGDG G+DV+A +R I +IP LS P +EVRGEV++ + Sbjct: 121 VSISLRYVEGSLDVAVTRGDGERGDDVTANVRTIRSIPSALSGRRAPATVEVRGEVFMPR 180 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAKGQ 254 + F LN I P+ NPRNAA+G L+ +P++ + + + + Q Sbjct: 181 SGFEELNGRRIEAEEAPFVNPRNAAAGSLKLRDPSEAAKRPLTAIFYQVAGPAAARIATQ 240 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E ++ M GFPV+ V A V R L YDIDG V KV+ Q + Sbjct: 241 WEAIELMGDWGFPVSPDVALARDVDAAVEACLAWDERRGGLDYDIDGTVVKVNSLEQQAR 300 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW I++KF T +L I++Q+GRTG LTPVA LEPV + G+ ++ ATLH Sbjct: 301 LGSTAKSPRWGIAYKFPAVSVRTVVLGIEVQVGRTGKLTPVAVLEPVFVSGSTVSRATLH 360 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N+D I+ L D+RVGD V +++ GEVIPKV ++ + R + F P+ C Sbjct: 361 NQDEIERL-----------DVRVGDTVEIEKGGEVIPKVARVVRSMRKGRPRRFRMPATC 409 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C VVR + G +C Q R++HF SR A +I GLG + Sbjct: 410 PACGEPVVRPEGEVDAR-------CGNESCPGQAAGRIQHFASRGAMDIRGLGSALVATL 462 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + D++ L + + G+ S NL + + ++ R + Sbjct: 463 VAE----GLVSDYGDLYGLDAE------SLAALDRMGERSAENLLAELEESKDRPFARVL 512 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 LGIRHVGA A+ LA + + A +A + +G +IA +I Sbjct: 513 HGLGIRHVGARAAQVLAARFTGMKELAAASEEELAETEE----------IGPVIAASIRS 562 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F ++PRN A+ L G ++ + +V TG+L+++ R +A E V + G Sbjct: 563 FLESPRNKEALRKLETAGVNMRGGSTPGRATALAGLTVVLTGSLERMTREQAAEAVAEAG 622 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 VS+ +S KTD+++VG +PGSKL+KA +LG++ ++E + +L Sbjct: 623 GRVSSSVSSKTDLVVVGADPGSKLKKALELGIRTIDESELERML 666 >gi|225025741|ref|ZP_03714933.1| hypothetical protein EIKCOROL_02645 [Eikenella corrodens ATCC 23834] gi|224941522|gb|EEG22731.1| hypothetical protein EIKCOROL_02645 [Eikenella corrodens ATCC 23834] Length = 778 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 253/806 (31%), Positives = 381/806 (47%), Gaps = 131/806 (16%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++ + +L Q ++ + YY P + D+EYD L R +A+ P P Sbjct: 1 MSTPQQRIRTLVQTLNRYAHEYYTLDAPSVPDAEYDRLYRELEALEAEHPQF---RLPES 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI----------EDLRKFITRIYRFWQKKDD 123 P ++GG + V H++P LSL ++ + F R+ + Sbjct: 58 PTQRVGGAVLDGFETVVHAVPMLSLNNAFSPRDDETGAFDHAEFLAFDERVCKELGVA-- 115 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IP 182 + + EPK DG +++ Y+ G V AA RGDG +GE+V+ I+ + IP L P Sbjct: 116 -QVEYAAEPKFDGLAVSLLYQNGILVQAATRGDGTTGENVTENIKTVRNIPLRLHGEKQP 174 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 ++EVRGEV + K DF ALN + G+KP+ANPRNAA+G LR+L+ R L+FF + Sbjct: 175 ALLEVRGEVLMLKADFAALNQRQLEAGQKPFANPRNAAAGSLRQLDSKITAQRKLHFFAY 234 Query: 242 GLGK--TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYD 298 G+ + E + E L + +GF + G A T V E + PY+ Sbjct: 235 GIAQLSGVERLPESHMEELALLHEIGFSLPKGYFGAYTGAAAVLREYERLAEHRPRLPYE 294 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+V KV+ + Q+QLG +R+PRW I+HKF ++A T + ID+Q+GRTG +TPVARL Sbjct: 295 IDGMVVKVNSLAEQQQLGFVSRAPRWAIAHKFPAEEALTTVEAIDVQVGRTGAVTPVARL 354 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 PV +GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +++ Sbjct: 355 APVFVGGVTVTNATLHNQDEVAR-----------KDVRVGDTVVVRRAGDVIPEVVRVLL 403 Query: 419 NERHPD------------AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSA 466 R +PF P CP+C S V R+ A RCTGG+ C A Sbjct: 404 ERRPMQPVDLLGEQMEPLHEPFRLPETCPVCGSAVEREAGE------AVARCTGGMLCQA 457 Query: 467 QQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN 526 Q+ + L HF SR A +I GLG +Q++ A + ADI+ L + + ++ Sbjct: 458 QRAQGLIHFASRKAMDIAGLGDKQIEALV----AADVLHSFADIYRLDIAKLQTIKDGKS 513 Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL---------------- 570 N+ DSI + R L RF+F+LGIRHVG A+ L Sbjct: 514 ---AATKWAQNILDSIAQSRTPPLARFLFALGIRHVGESTAKQLAAAFGNLDTVRRAPEP 570 Query: 571 ----------------AKYY------LSYQNFAQ------EINNIIAHNNDDWLS-LIRV 601 A Y+ + Q + N L R+ Sbjct: 571 ILACLPDIGSVVAHAIAHYFRQPAQQKMLDDLLQHVAPQAAAPSPQTRANAAPEQWLQRL 630 Query: 602 PLV--GDIIA----------------QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 P + + A QA+ + +QN R A ALL+E++ ++ Sbjct: 631 PNIKLSEKRAAELWQLAGSLHALQTDQALPQEWQNWRRQPAHAALLQEITAFTEALPESS 690 Query: 644 -----------SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + I K V TGTL ++R +A + G VS +S+KTD ++ G+ Sbjct: 691 TDNVSGSLHPENHPIAGKTFVLTGTLPTLKRDQAAALIEAAGGKVSGSVSKKTDFVVAGE 750 Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLL 718 GSKLEKAQ LGV +++EE+ L +L Sbjct: 751 AAGSKLEKAQALGVAVLSEEELLGML 776 >gi|42520616|ref|NP_966531.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila melanogaster] gi|81652444|sp|Q73H01|DNLJ_WOLPM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|42410355|gb|AAS14465.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila melanogaster] Length = 662 Score = 469 bits (1206), Expect = e-129, Method: Composition-based stats. Identities = 267/697 (38%), Positives = 389/697 (55%), Gaps = 49/697 (7%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 L+ +I+YH+ Y+Q +KP I D+EYD LK++ I + +G Sbjct: 9 EKLQDQINYHNVLYHQKNKPEISDAEYDELKKKLAEIEPE-----IYATQDS----VGAP 59 Query: 82 MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141 + KV H P LSLE ++ + + KF+++I RF + + I EPKIDG + Sbjct: 60 PDERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFLIE---DKIEILCEPKIDGLSFSA 116 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201 YE G+FV AA RGDG GEDV+ + I P+ L +EVRGE+YIS +DFL L Sbjct: 117 IYEDGRFVKAATRGDGFVGEDVTHNVATIKGFPKFLQGV-QGRLEVRGEIYISNSDFLKL 175 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 N+ +ANPRNAA+G L++L+ + K Q E+L K+ Sbjct: 176 NEN------DEFANPRNAAAGSLKQLDANITASRP--LRYFAYSLIGGAEKSQSEVLNKL 227 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 LGF VN ++ G++ +YNE+ + R L YDIDG+VYKV++ LQ +LG ++ Sbjct: 228 EALGFCVNEHQSLTSSLDGMLKFYNEVYNCRYNLDYDIDGIVYKVNDLVLQNRLGNTHKA 287 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PR +++KF+ A T+L I IQ+GRTG+LTPVA L PVN+GG L++ A+LHN+D IK Sbjct: 288 PRSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVNVGGVLVSRASLHNQDEIKR 347 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +DIR GD V +KRAG+VIP++V++ + R P+ F FP CP C S+V Sbjct: 348 -----------KDIREGDIVTIKRAGDVIPQIVEVSRDSRLPNTPEFVFPEVCPECGSKV 396 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 + AA RC AC AQ +E+LKHFVS+DAF+I GLG +Q++FF+ Sbjct: 397 RQVEGE------AAVRCPEEFACKAQMIEKLKHFVSKDAFDIVGLGDKQIEFFYD----L 446 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 I+ DIFTL+ R +E G+G+ S+ NL +SI RR I+L+RFIFSLGIR Sbjct: 447 GLIKQIHDIFTLEERL--DEFNLEEQSGWGEKSIANLLNSIQSRRVITLDRFIFSLGIRF 504 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 +G A LA YY+SY N+ + + N L+ + +G A+++ F+ N Sbjct: 505 IGQVAAELLADYYVSYNNWYNSMIELSLDNT----ELVGIDGIGKKGAESLESFFSKEHN 560 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I + L + + S K +VFTG L + R +A+ LGA VS+ L Sbjct: 561 IKMLNDLTACLQILPVSSNSSNSVLNN-KIIVFTGKLLAMSRGEAKVRAKTLGAKVSSHL 619 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 S KTD +I G+ PGSK +KA +LGV+I++E+Q+ ++ Sbjct: 620 SAKTDYLIAGEKPGSKYKKAVELGVEILDEDQWHKVI 656 >gi|157164612|ref|YP_001467146.1| NAD-dependent DNA ligase LigA [Campylobacter concisus 13826] gi|190359238|sp|A7ZED8|DNLJ_CAMC1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|112801346|gb|EAT98690.1| DNA ligase, NAD-dependent [Campylobacter concisus 13826] Length = 647 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 208/701 (29%), Positives = 345/701 (49%), Gaps = 61/701 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++E ++ YY +P+ D EYDAL A A P P + Sbjct: 3 KQEYEKAVDTLNAWAKAYYDEDEPLASDEEYDALYHAVLAFEQANPSEISLF---SPTKR 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K +H S+E I+++ +L ++ R + ++ F EPK DG Sbjct: 60 VGGGVKEGFSKASHIKRMWSMEDIFSLGELDAWLKRGEK-------ENLTFVAEPKFDGA 112 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G V A RGDG +GEDV+ R I ++P S++ +IE+RGEV I K+D Sbjct: 113 SLNLLYENGVLVRAITRGDGVTGEDVTQNARTISSVP--KSISYKGLIEIRGEVVIRKDD 170 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN E G P +NPRNAA+G LR+L+ R L F G+G + K E Sbjct: 171 FELLNMERAKEGEAPLSNPRNAAAGSLRQLDSAVTAKRKLLFIPWGVG-EQSLGLKDHSE 229 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +++ +R LGF ++ + + + YNE+ + R + +DG+V +V++ + +QLG Sbjct: 230 VMKFVRDLGFERDDFFKI-LKKDELEAAYNELLANRDSKSVMMDGMVIRVNDLARCEQLG 288 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + P++M++ KF + TRL D+ +Q+GR+G++TPV L+ VNI GA + +ATLHN Sbjct: 289 YTVKFPKFMVAFKFPAIEKVTRLKDVALQVGRSGVVTPVGVLDEVNIDGANVKSATLHNF 348 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L + D + + R+G+VIPK+ + + R Q P FCP+ Sbjct: 349 DEIERL-----------GVMKNDYIGIIRSGDVIPKITKVFKDRRDGSEQAIERPKFCPV 397 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S ++ + L+C A+ + + H+ S+ NI+GLG ++ F Sbjct: 398 CGSHLLDEG---------VFVKCQNLSCRARVVGSIIHYASKKCLNIDGLGDAIVNLLFD 448 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I DI+ L+ S + GF + V NL ++I + L RFI Sbjct: 449 K----GLIACIKDIYGLKFDDLMS------LEGFKEKKVNNLLNAIEASKGAELSRFITG 498 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LG H+G A+ LA + + + + L + G +A ++++F Sbjct: 499 LGCEHIGEVAAKKLASSFG------------LDWLDASFEELTALEGFGVEMANSLIDF- 545 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 N + AL + V PS+ +++S+ + K +V TGTL + R + + + GA Sbjct: 546 -AEVNRDEILALSQIVQPSVT-QVQSISNALSGKTVVITGTLSR-PRDEIKAELESFGAK 602 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 VS +S+KTD ++ G+ GSKL+KA +LGV +++E ++ L Sbjct: 603 VSGSVSKKTDFVLAGEEAGSKLDKANELGVLVIDESEYERL 643 >gi|47569950|ref|ZP_00240615.1| DNA ligase, NAD-dependent [Bacillus cereus G9241] gi|47553396|gb|EAL11782.1| DNA ligase, NAD-dependent [Bacillus cereus G9241] Length = 615 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 236/657 (35%), Positives = 365/657 (55%), Gaps = 49/657 (7%) Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 + P ++GG + KVTH P LSL +N DLR F R+ Q DD ++ + Sbjct: 2 SEDSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYI 58 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RG Sbjct: 59 CELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARG 116 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248 E Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 117 EAYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEE 176 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E L + LGF N R T +++Y E + RS L Y+IDG+V KVD+ Sbjct: 177 KTIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRSHLDYEIDGIVIKVDD 236 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 237 VALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIV 296 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 297 RRASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEY 345 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG+ Sbjct: 346 HMPTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGE 398 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + F A IR AD+++L + Q + FG+ S TNL +I + Sbjct: 399 RVITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKEN 448 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SLER +F LGIRHVGA+ AR+ A+++ + + L + +G+ + Sbjct: 449 SLERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKM 498 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQR 663 AQ++V ++ N + ++ + + K NV S K +V TG L+ + R Sbjct: 499 AQSVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 558 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 559 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 615 >gi|291519153|emb|CBK74374.1| DNA ligase, NAD-dependent [Butyrivibrio fibrisolvens 16/4] Length = 651 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 194/694 (27%), Positives = 330/694 (47%), Gaps = 52/694 (7%) Query: 33 DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN-LSLFKVTH 91 + YY +P I D EYD L + A P+ P+ P KIGG + KVTH Sbjct: 2 NKYYNDDEPEITDFEYDQLMLQLKAAEKEHPEWV---TPDSPTQKIGGVAKREAGVKVTH 58 Query: 92 SIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG----- 146 +P LS+E ++ E++ +++ ++ F++E KIDG +T+RYEK Sbjct: 59 DVPMLSIEDVFTKEEVVEWVKKVK-----AVHPDARFSVEAKIDGLSMTLRYEKDTTGKL 113 Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206 K A RGDG GEDV+ IP + + +++RGEVY+S DF N++ Sbjct: 114 KLKLAETRGDGIVGEDVTENALVIPDV-NRYLDLPYDNLQLRGEVYMSHEDFDRYNEDQE 172 Query: 207 AVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 G K ANPRN A+G LR+L+ R L FV + + + + L + Sbjct: 173 LKGGKLAANPRNLAAGTLRQLDANITKQRGLKMFVFNVQQGPDELTVSHCKGLDILSEHK 232 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 PV R + I++ +E+ R +DIDG V K+D+ + + A+ Sbjct: 233 VPVVYH-RICDNADEILNVIDEIGEKREEFEFDIDGAVVKIDQVAYRADFSTSAKYTNGH 291 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 I++K+ ++ T+LLD+++ +GRTG + P A EP+ + G ++ ATLHN+D+I L Sbjct: 292 IAYKYPPEEKETKLLDVELSVGRTGRVNPTAIFEPIRLCGTTVSRATLHNQDFIDEL--- 348 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 +I +GD ++V ++GE+IPK+ ++ ++R + P+ CP C V RD Sbjct: 349 --------NIGIGDTIVVYKSGEIIPKIKEVKQDKRPAGTTTYKIPNICPACGGPVSRDA 400 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 + A +CT +C AQ + +FVSRDA +I G G+ + + I+ Sbjct: 401 D------TADMKCTNP-SCPAQLERHIINFVSRDAMDIRGFGEVYIIDLVRR----GYIK 449 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 ADI++L+ ++ + + + L I + + GI +VG Sbjct: 450 DIADIYSLKDKRDELIEEGII---GKEKNTDKLLGVIESSKENDAVKLFTGFGIPNVGKA 506 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 A++L + + + L++V +G+I A++I ++ +P NI + Sbjct: 507 AAKALLGQFKDIEKIMELSE----------EELMQVNDIGEISAKSIYDYLHDPVNIDII 556 Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L + ++ + ++ V TGTL + R +AQE + G + +S+KT Sbjct: 557 GRLKAAGVNMVEEEKEGATDKLSGLTFVITGTLPTMGRKEAQELIELNGGKCAGSVSKKT 616 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ G+ GSKL+KA LGV +++EE L L+ Sbjct: 617 SYLVAGEAAGSKLDKANSLGVTVLDEEGLLSLIN 650 >gi|313125027|ref|YP_004035291.1| DNA ligase, NAD-dependent [Halogeometricum borinquense DSM 11551] gi|312291392|gb|ADQ65852.1| DNA ligase, NAD-dependent [Halogeometricum borinquense DSM 11551] Length = 694 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 232/724 (32%), Positives = 355/724 (49%), Gaps = 54/724 (7%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 P+E+LS E A +E L + + HD YY + P++ D YDAL R + AF Sbjct: 24 FEPVESLSAEAAEREARLLREAVREHDHRYYVAADPLVADRTYDALFNRLQELEDAFD-- 81 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 +D + P ++GGE L V H P LS+++ D+R F R+ Sbjct: 82 --LDDESSPTRRVGGEPLDELDTVEHVAPMLSIDQSVEAADVRDFDRRVREAVG-----E 134 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + + EPK DG + + YE G++V AA RGDG G+DV+A +R I +IP L + P+ + Sbjct: 135 VRYVCEPKFDGLSVEVVYEDGEYVRAATRGDGERGDDVTAQVRTIRSIPLRLRGDYPDFL 194 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245 VRGEVY+ ++ F LN E I +P+ANPRNAA G LR+L+P+ Sbjct: 195 TVRGEVYMPRDAFQELNRERIEADEEPFANPRNAAVGTLRQLDPSVTADRPLDCFFYDVL 254 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + + Q L ++ G N+ V G ++Y +E+ + R L Y+IDG V K Sbjct: 255 DASDVPETQTATLSRLDSWGLRTNDRVESVADIDGAIAYRDELMAAREDLNYEIDGTVIK 314 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD ++QLGE +RS RW ++KF + T + D+ +Q+GRTG LTPVA L+PV++GG Sbjct: 315 VDRRDQREQLGETSRSVRWAFAYKFPARSEVTTMTDVVVQVGRTGRLTPVALLDPVDVGG 374 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ A+LHN + I+ L + +GD V +KRAG+VIP V +++ Sbjct: 375 VTVSRASLHNPEEIERL-----------GVNIGDEVRIKRAGDVIPDVEEVVEKH---SE 420 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 F FP CP+C S V R+ CTGGL C AQ + + H+ R A +IEG Sbjct: 421 GTFDFPEECPVCGSPVNRE--------GPLAYCTGGLTCEAQLVRAVDHYAMRGALDIEG 472 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG ++++ I D++ L+R ++ + G+G S NL I Sbjct: 473 LGGERVEQLVDE----GLIEGLPDLYRLERD------ELSELEGWGKTSADNLVTEIEAT 522 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 ++ L F+ LGI VG AR+LA+ + S + D G Sbjct: 523 KSPELSSFLVGLGIPEVGGSTARNLARAFGSLDAVMDASVEELEEVEDV----------G 572 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +A+ I EF+ N A+ ++ + E E++ VFTG+L + R Sbjct: 573 PTVAEKIREFFDTESNRKAIAE-MRSLGVEPETAETAGGDELDGLTFVFTGSLA-VTRGD 630 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 AQE V GA ++ +S TD +++GDNPG SK + A V +++E++F LL + Sbjct: 631 AQELVQAHGANATSSVSGNTDYLVIGDNPGQSKRDDAAANDVPVLDEDEFAELLAEKGIE 690 Query: 725 LRIH 728 Sbjct: 691 YPPE 694 >gi|222094064|ref|YP_002528121.1| nad-dependent DNA ligase liga [Bacillus cereus Q1] gi|221238119|gb|ACM10829.1| DNA ligase, NAD-dependent [Bacillus cereus Q1] Length = 615 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 233/657 (35%), Positives = 365/657 (55%), Gaps = 49/657 (7%) Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 + P ++GG + KVTH P LSL +N DLR F R+ Q DD ++ + Sbjct: 2 SEDSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYI 58 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L+ + +E RG Sbjct: 59 CELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARG 116 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248 E Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 117 EAYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEE 176 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 177 KTILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDD 236 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 237 VALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIV 296 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV+++ ++R + + + Sbjct: 297 RRASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVLFDKRTGEEEEY 345 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C+S +VR A RC C AQ E L HFVSR+A NI+GLG+ Sbjct: 346 HMPTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGE 398 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + F+ A IR AD+++L + Q + FG+ S TNL +I + Sbjct: 399 RVITQLFE----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKEN 448 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SLER +F LGIRHVGA+ AR+ A+++ + + L + +G+ + Sbjct: 449 SLERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKM 498 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQR 663 AQ++V ++ N + ++ + + +NV S K +V TG L+ + R Sbjct: 499 AQSVVAYFDNEDVLELLQQFKEYGVNMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGR 558 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL L + Sbjct: 559 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 615 >gi|331270357|ref|YP_004396849.1| DNA ligase [Clostridium botulinum BKT015925] gi|329126907|gb|AEB76852.1| DNA ligase, NAD-dependent [Clostridium botulinum BKT015925] Length = 663 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 204/713 (28%), Positives = 359/713 (50%), Gaps = 58/713 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L E++ YY P + D +YD + P Sbjct: 1 MEGKKQQIYKLVDELNKLAYEYYVLDNPSVADKDYDKKYDELVQLEKQ----TGMMLPYS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNSIF 127 P ++G + K TH SL K ++E+++ + + + + I Sbjct: 57 PTQRVGDMVLAKFEKYTHKGKLWSLGKAQSLEEVKDWHNKNIKAINEYNLKHEDKLPPIK 116 Query: 128 FTLEPKIDGTMITIRYEK-GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 + + K DG I Y+ G V AA RG G GED++A + I T+P L +N +IE Sbjct: 117 YIVTKKFDGLTINCTYDNEGILVTAATRGTGEIGEDITAQAKTIKTLP--LKINNNALIE 174 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245 V GE ++K F N + P N RN A+G LR LN + R L+ F + +G Sbjct: 175 VHGEAIMTKEAFEEYNKIA----QVPLKNLRNGAAGALRNLNIKETARRNLSAFFYDVGY 230 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + EML+ ++ G P+++ V+ +T I ++ IR+ L YDIDG+V Sbjct: 231 NEGKPFETYSEMLKFIKEQGIPMDDYVKTCSTVEEIEEEIKYIEEIRNDLNYDIDGIVIA 290 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 +D+ ++ +G + P+W +++KF ++A+T+L+D++ +GR+G +TP A LEPV IGG Sbjct: 291 IDDMKSRELIGYTVKFPKWALAYKFEAQEATTKLIDVEWNVGRSGRVTPTAILEPVEIGG 350 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + ATL+N D I + +++G V ++R+ +VIP+++ ++ N D Sbjct: 351 VTVKRATLNNMDDINR-----------KGVKLGSVVFLRRSNDVIPEIMGVVENS-TEDT 398 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + P CP C S +V++ + C L+C Q ++ + HF SR+A NI G Sbjct: 399 KEIKTPEVCPYCGSEIVQE--------GVHYFCENTLSCKPQLVKSIVHFGSREAMNIAG 450 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 ++ F+ D I+ +D++ +++ ++ N+ FG+ NL D+I K Sbjct: 451 FSEKTAGQLFEELD----IKSISDLYRIKKE------ELLNLQRFGEKKAQNLIDAIEKS 500 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 +N L FI++LGI +VG + + L K + + +N + LI V +G Sbjct: 501 KNCDLPSFIYALGIPNVGKKTSTDLCKKFKTLKNLKSAT----------FDDLISVEDIG 550 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 DI+A++I+EF+++ + +++ LL+ + E+ + K +V TG+L R + Sbjct: 551 DIVAESIMEFFKDDTILKSIDELLELGVNPEFQEEEIQENIFNGKTVVVTGSLNSFSRSE 610 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +E + LGA VS+ +S+KTD +IVG +PGSK EKA +L VKI++E++F ++ Sbjct: 611 IKEKLQSLGAKVSSSVSKKTDYVIVGKDPGSKYEKAVELNVKIIDEDEFKNMI 663 >gi|228469580|ref|ZP_04054573.1| DNA ligase, NAD-dependent [Porphyromonas uenonis 60-3] gi|228308930|gb|EEK17605.1| DNA ligase, NAD-dependent [Porphyromonas uenonis 60-3] Length = 679 Score = 468 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 208/722 (28%), Positives = 341/722 (47%), Gaps = 58/722 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E+ L + I H+ YY + P I D++YDAL +R + P+ A DP Sbjct: 1 MTPNSTELEIEQLRKTIEQHNRAYYLDNAPTISDADYDALMQRLLTLEAEHPEFA---DP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P ++G + N + +V H P LSL +N +++ + R + + + E Sbjct: 58 TSPSLRVGRDRNDAFVQVAHEQPMLSLSNTYNYDEIAEICKRTDTLL---ATDDVPWVAE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV------LSLNIPEII 185 K DG+ I++ YE+G A RGDG G+DV+ +R I ++P I Sbjct: 115 MKYDGSSISLIYEEGVLARAVTRGDGTLGDDVTVNVRTIQSVPLRLHSIAGHPDYTRGRI 174 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG 244 EVRGEV + +F LN E A P+ANPRNAA+G L+ LN R L + L Sbjct: 175 EVRGEVLLPFKEFERLNGERTAESEAPFANPRNAAAGTLKTLNSRIVAQRRLLCICYYLY 234 Query: 245 KTSEIF--AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + YE ++ + +GF +++ + Y +E R LPY DG+ Sbjct: 235 ALDDETRLPDSYYERMKLLEEMGFDTGVAPFKSSDLSALYHYIDEWDVQRGDLPYATDGI 294 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KVD + Q+ LG A+SPRW ++K+ + A LL +D Q+GR+GI+TPVA +EPV Sbjct: 295 VLKVDSLTQQRVLGNTAKSPRWAFAYKYQPENARAELLSVDYQVGRSGIVTPVANVEPVL 354 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 I G ++ ATLHNE++IK L D+ D V +++ GE+IPK+ + + R Sbjct: 355 ISGTVVRRATLHNEEFIKSL-----------DLHYHDYVYIEKGGEIIPKITAVEPSLRR 403 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P+A+P P CP C + + + + C AC Q + R++H+ +R A + Sbjct: 404 PEAEPVRLPERCPACGAPLQQIDG------SVGYYCVNSYACPPQIMGRIEHYCTRRAAD 457 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I + F + I D++ L + + F + S+ NL SI Sbjct: 458 INVGPETIDALFDR-----HLIENIDDLYKLTASD------LAQLPNFKEKSINNLLASI 506 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + + R ++ +GIR VG A++LA+++ S AQ L +P Sbjct: 507 EQSKGRPFARLLYGIGIRFVGEGTAKTLARHFQSIDRLAQAT----------AYELQALP 556 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTL 658 VG IA+ +V F+ RN + L + E+ +E +++V +G+ Sbjct: 557 DVGPKIAEQVVYFFSLERNQQLIAELQRCGVRLEECAEEATDMPQSNRLEGERIVISGSF 616 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717 + R + ++ + Q G +S +T +++G + G SK KA+QLG+ ++ EE+FL Sbjct: 617 TQHSRDEYKQLIEQHGGTNVGSISSRTTFVLMGSDMGPSKRAKAEQLGIPLVTEEEFLAR 676 Query: 718 LQ 719 L Sbjct: 677 LN 678 >gi|302874256|ref|YP_003842889.1| DNA ligase, NAD-dependent [Clostridium cellulovorans 743B] gi|307689480|ref|ZP_07631926.1| NAD-dependent DNA ligase LigA [Clostridium cellulovorans 743B] gi|302577113|gb|ADL51125.1| DNA ligase, NAD-dependent [Clostridium cellulovorans 743B] Length = 665 Score = 468 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 199/716 (27%), Positives = 358/716 (50%), Gaps = 60/716 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + I ++K + L ++++ YY P I D EYD L + + Sbjct: 1 MEISDSKKRIEELIEQLNKFAYEYYALDNPSISDKEYDKLYDELTILEKETGYILSY--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW------QKKDDNS 125 P ++G + K H SL+K + E++ ++ R + Sbjct: 58 -SPTQRVGDGILSQFSKYIHKGRLWSLDKAQSFEEIIEWHNRNVKAVMQYNKENADKLPP 116 Query: 126 IFFTLEPKIDGTMITIRYEK-GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 + + + K DG + Y+ G + AA RG G GED++A + I +P + + + Sbjct: 117 LEYVITKKFDGLTLNCTYDNDGIMIKAATRGTGEIGEDITAQAKTIKALPLKV--DHKGL 174 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL 243 E+ GE ++K F A N++ N RN A+G LR LN + R L+ F + + Sbjct: 175 FEIHGEAIMTKEAFDAYNEKA----EVKLKNLRNGAAGALRNLNLKETAKRNLSAFFYDV 230 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G + +M++ +R FP+++ ++ A I + + SIR+ L YDIDG+V Sbjct: 231 GYNEGDPFESYIDMMKFIREKNFPIDDYMKIARDTEDIKNEIEYINSIRADLNYDIDGIV 290 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 +++ + LG + P+W I++KF ++ +T LLD++ +GR+G ++P A LEPV++ Sbjct: 291 IVINDMRTRAVLGYTIKFPKWAIAYKFEAEETTTELLDVEWNVGRSGRVSPTALLEPVDL 350 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG + ATL+N D IK +++++G+RV V+R+ +VIP+++ + Sbjct: 351 GGVTVKRATLNNMDDIKR-----------KNVKIGNRVFVRRSNDVIPEIMGVAEEL--E 397 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 +A+ PS CP C S ++ + A + C L+C Q ++ + HF SR+A NI Sbjct: 398 NAREIIAPSNCPSCGSELML--------VGAHYFCENTLSCKPQMVKSIVHFGSREAMNI 449 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EG ++ + ++ D ++ +D++ L++ ++ N+ FGD NL D+I Sbjct: 450 EGFSEKTAEQLYEKVD----LKTLSDLYKLKKE------ELLNLEKFGDKKAQNLLDAIE 499 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K + L FI++LGI +VG + A+ L K S + + + L+ + Sbjct: 500 KSKECELASFIYALGIPNVGKKTAKDLCKNLKSLEGIKKAT----------YEDLLAIED 549 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +G+I+A+ I+EF+ + + + +++ LL PS N S +K +V TGTL+ Sbjct: 550 IGEIVAKCIIEFFSDEKILRSIDELLAVGVSPSYEETLVNDQSSFMDKTVVVTGTLKNFS 609 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R + ++ + LGA VS +S+KTD +I G+ GSK +KA LG+KI++EE+FL ++ Sbjct: 610 RTEIKDKLEALGAKVSGTVSKKTDYVIAGEAAGSKYDKAISLGIKILSEEEFLAMI 665 >gi|223039682|ref|ZP_03609968.1| DNA ligase, NAD-dependent [Campylobacter rectus RM3267] gi|222879065|gb|EEF14160.1| DNA ligase, NAD-dependent [Campylobacter rectus RM3267] Length = 647 Score = 468 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 220/703 (31%), Positives = 343/703 (48%), Gaps = 60/703 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +KE ++ YY PI D EYD L + A P P + Sbjct: 3 KKEYLEAVDTLNAWAKAYYTDDAPIATDEEYDELYHKVLEFERANP---GDISMFSPTKR 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE++ K HS+ S+E I++ E+L ++ R D + F L+PK DG Sbjct: 60 VGGEVSDGFVKARHSVRMWSMEDIFSFEELLAWLKR-------GDKEGLEFALQPKFDGA 112 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G V A RGDG +GEDV++ + I IP L + IE+RGEV I+KND Sbjct: 113 SLNLLYENGALVRAITRGDGITGEDVTSNAKVIKNIP--LQIAYNGRIEIRGEVVIAKND 170 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N G +NPRNAA+G LR+L+ +R L F G G + + + Sbjct: 171 FDEINFARAQRGEPQLSNPRNAAAGSLRQLDSAVTASRRLRFKPWGYG-EQNLGLETYSQ 229 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 M+ + GF + T I Y ++ + R + P+ +DGLV +V + ++LG Sbjct: 230 MMDFIYSQGFEREEFFKICRTAEQIEEAYKQLVAQRDSKPFMMDGLVVRVQSIAASEELG 289 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + P++M+++KF + +TRLLD+ Q+GR+G++TPV LEPVNI GA + +ATLHN Sbjct: 290 YTEKFPKFMVAYKFPAIEKTTRLLDVAFQVGRSGVVTPVGVLEPVNIDGATVKSATLHNF 349 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L ++ GD + + R+G+VIPK+ + R P P CP+ Sbjct: 350 DEIERL-----------GVQKGDFISIIRSGDVIPKITGVFKQRRDGSQMPIERPRECPV 398 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S ++ + L C A+ + L HF S+ NI+GLG+ ++ F+ Sbjct: 399 CGSMLLDEG---------VFVKCQNLECKARVINSLIHFASKKCLNIDGLGEAIVNQLFE 449 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 A + ADI+ L + S + GF D + NL +I R +L FI S Sbjct: 450 ----AGLVAKIADIYELTAQDLAS------LEGFKDKKIANLLGAIEASRTPALHSFIAS 499 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI H+G A+ +A+ Y + + + G+ +A++ EF Sbjct: 500 LGIEHIGEVAAKKIAQIYP------------QNWRELSFGEVAAIEGFGEAMAESYAEFM 547 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 Q N ++ +L+ VSP +E S I K V TGTL K R + + + GA Sbjct: 548 QV--NRQNLDEILRFVSPQAQIYETKQ-SAISGKTFVITGTLSK-SRDEFKRVLEANGAK 603 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 VS +S+KTD ++ GD GSKL+KA++LGVK + E++ +++ Sbjct: 604 VSGSVSKKTDFVLYGDEAGSKLDKARELGVKAITEDELRRMIE 646 >gi|229819870|ref|YP_002881396.1| DNA ligase, NAD-dependent [Beutenbergia cavernae DSM 12333] gi|229565783|gb|ACQ79634.1| DNA ligase, NAD-dependent [Beutenbergia cavernae DSM 12333] Length = 782 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 216/783 (27%), Positives = 347/783 (44%), Gaps = 98/783 (12%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A + L Q+++ YY P + D+ +DAL +A+ + P+L P+ P Sbjct: 23 EAAHRWAELAQQVNDARFAYYVKDAPTLSDAAFDALLHELEALEESHPEL---RVPDSPT 79 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + V H LSL+ ++ E + + R+ R + + E KID Sbjct: 80 QQVGGTFSTEFTAVEHVERMLSLDNAFSAEGVESWAQRVERDLDAAAAG-LHYLCELKID 138 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVRGEVY 192 G I + YE G+ V AA RGDG +GEDV+ +R I +IP VL + P IE+RGEV+ Sbjct: 139 GLAIALLYEGGRLVRAATRGDGRTGEDVTLNVRTIASIPHVLGGDAASHPARIEIRGEVF 198 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF- 250 + F ALN + G+ P+ANPRNAA+G LR+ +P R L + HG+G Sbjct: 199 LPVEAFEALNSSQVEAGKSPFANPRNAAAGSLRQKDPRVTARRALGMYAHGIGALDWGDA 258 Query: 251 -----AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 Q ++ + + G P + R + G+ R + ++IDG+V K Sbjct: 259 PEASSITRQSQVYELLSSWGVPTSPHTRVVDDLAGVQEMIAYYGEHRHDVEHEIDGVVVK 318 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VDE +LQ++LG +R+PRW I++K+ ++ +TRLLDI + +GRTG +TP +EPV + G Sbjct: 319 VDEVALQRRLGATSRAPRWAIAYKYPPEEVNTRLLDIRVSVGRTGRVTPYGVMEPVVVAG 378 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + + ATLHN +K + + +GD V++++AG+VIP++V +V R Sbjct: 379 STVEAATLHNASEVKR-----------KGVLIGDTVVLRKAGDVIPEIVGPVVALREGRE 427 Query: 426 ---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 + F P CP C + + + RC +C AQ ER+ R F+ Sbjct: 428 SELREFVMPDVCPSCGTPLA-----PAKEGDVDIRCPNARSCPAQLSERVSALGGRGGFD 482 Query: 483 IEGLGKQQLDFFFKSED---------------------------------PAFSIRIPAD 509 IE LG + E A + D Sbjct: 483 IEALGWEAATALTDPERGRPVDASVYRPGADLTAEAPAALPDRQAPVLATEAGLFELTPD 542 Query: 510 I------FTLQRRQQTSTTKIENILGFGDV-----------SVTNLYDSINKRRNISLER 552 + +R+ +T E+ F + L+D + + L R Sbjct: 543 DVANVRVWREIKRKGEATGFWEDRPFFFTKGTAKVPPKPTQTTQVLFDQLELAKTRPLWR 602 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 + +L IRHVG AR+LA+ + S +A VG IA A+ Sbjct: 603 VLVALSIRHVGPTAARALAQRFGSIDAIDAASEEELAAA----------DGVGPTIAAAV 652 Query: 613 VEFYQNP-----RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 E+ +P V +++V +E +V TG+L++ R A+ Sbjct: 653 KEWLGDPEAPDNWRREIVRRWAAAGVRMADERDESVPRTLEGLTVVVTGSLERFTRDGAK 712 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRI 727 E V G + +S+ TD ++VG+N GSK KA++LG I++E F LL + + Sbjct: 713 EAVLARGGKAAGSVSKSTDFVVVGENAGSKETKARELGRPILDEAGFERLLAEGPDAVAE 772 Query: 728 HDD 730 D Sbjct: 773 SAD 775 >gi|225075650|ref|ZP_03718849.1| hypothetical protein NEIFLAOT_00666 [Neisseria flavescens NRL30031/H210] gi|224953072|gb|EEG34281.1| hypothetical protein NEIFLAOT_00666 [Neisseria flavescens NRL30031/H210] Length = 822 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 243/834 (29%), Positives = 379/834 (45%), Gaps = 170/834 (20%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L ++ + YY P + D+EYD L R +A+ P+L P+ P + Sbjct: 5 AQRIQYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128 +GGE +V H IP LSL ++ + ++ F R+ + Sbjct: 62 VGGEPLAGFNEVRHEIPMLSLTNAFSPQDENGVFDHTEMYAFDERVRGGLN---GEKPEY 118 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187 +EPK DG I++ Y G AA RGDG +GEDV+ ++ + IP L PE+IE+ Sbjct: 119 VIEPKFDGLAISLLYRDGVLTQAATRGDGTTGEDVTHNVKTVSNIPLRLHGENIPELIEI 178 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246 RGEV + K DF ALN + G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 179 RGEVLMLKADFAALNKKQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQ 238 Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVY 304 A+ + L + LGF + +G V + E + PY+IDG+V Sbjct: 239 QGGFIAEEHLQELNYCKELGFSLPDGNFGCFKNIDEVLAFYEQMQQKRPTLPYEIDGMVV 298 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + Q++LG +R+PRW I+HKF ++A T + ID+QIGRTG +TPVARL+PV +G Sbjct: 299 KVNSLAQQEKLGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407 Query: 425 AQPFSF---------------------------PSFCPICQSRVVRDLNPKTGKLVAAHR 457 S P+ CPIC+S + R+ A R Sbjct: 408 ETNISVSDGLQDDLFAETPSETRSEPLHKPYRLPTHCPICRSEIEREEGE------AVAR 461 Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ--- 514 C+GG+ C AQ+++ L HF SR A +I+GLG++Q++ + +R AD++ L Sbjct: 462 CSGGMLCQAQRVQGLIHFASRKAMDIDGLGQKQIEQLVAQD----LVRHFADLYRLDIPT 517 Query: 515 -------------RRQQTSTTKIENILG-------------FGDVSVTNLYDSINKRRNI 548 ++ S ++IE+ G N+ I + Sbjct: 518 LQKMKETADKASINEEEPSNSEIEDFEGETGNTLLAKNNKKQPTKWAENILAGIEASKTP 577 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------------------- 589 L RF+F+LGIRHVG A++LA+ + + ++ I+A Sbjct: 578 ELARFLFALGIRHVGERTAKTLAQAFGTLEHVRHAPEPILACLPDIGTVVARSIAHFFAQ 637 Query: 590 -HNNDDWLSLIRV--------------------------PL--VGDIIAQAIVE------ 614 L+ V P + + A A+ E Sbjct: 638 EAQQAMIDELLAVGIAPQSQAVTIPPLRHAEPQRWIARLPDFKISETKALALWELAGQSI 697 Query: 615 ---------------FYQNPRNICAVEALLKEVSPSIGRHEKN-----VSSEIENKKLVF 654 + P+N +E + + ++ + + ++ I K V Sbjct: 698 EGLQTDKALPADWQTWRSKPQNAALLENMKTFFAQTLSKLQDETISDGINEAIAGKTFVL 757 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 TGTL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKAQ LGV + Sbjct: 758 TGTLPTLKRDQAQAMIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKAQALGVAV 811 >gi|257466592|ref|ZP_05630903.1| NAD-dependent DNA ligase [Fusobacterium gonidiaformans ATCC 25563] gi|315917747|ref|ZP_07913987.1| DNA ligase [Fusobacterium gonidiaformans ATCC 25563] gi|313691622|gb|EFS28457.1| DNA ligase [Fusobacterium gonidiaformans ATCC 25563] Length = 676 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 216/715 (30%), Positives = 355/715 (49%), Gaps = 50/715 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S ++ L++++ + D YY ++ +I D EYD L + + + + ++ Sbjct: 2 ISKKEKENRREELQKKLQRYSDAYYSQNESLISDYEYDMLLKELENLEAE----LQIQNK 57 Query: 72 NGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + +G + K+ H P LSL + I ++ F+ R + D+ + Sbjct: 58 DSITQTVGSSLKNSKFQKIAHKTPMLSLSNTYQIGEIEDFLLRAKKNLNMTDNLEVEM-- 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K+DG I+I YEKGK V A RGDG GEDV+ + I +IP LS IE+RGE Sbjct: 116 EIKLDGLSISIIYEKGKLVRAVTRGDGIVGEDVTENVLQIESIPHELSEAF--DIEIRGE 173 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEI 249 + + ++F LN I G + +ANPRNAASG LR+L+P R+L + + + + Sbjct: 174 IVLPFSEFENLNKIRIEKGEEVFANPRNAASGTLRQLDPKIVKERHLAAYFYFIVNAEQY 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q + + + L P + + + R L Y+ DGLV K++ Sbjct: 234 GIHSQKDSIAFLEKLSLPTTGICEIFHNLSDLENRIEHWSKERENLAYETDGLVLKINNI 293 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SL ++LG +SPRW +++KF KQ +T+LLDI Q+GRTG +TPVA LE V + G+ + Sbjct: 294 SLWEKLGSTGKSPRWAVAYKFPAKQVTTKLLDITWQVGRTGKITPVAELEEVELSGSRVK 353 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN D I +DIR+GD V +++A E+IP+VV + +R + + Sbjct: 354 RASLHNYDEIVR-----------KDIRIGDTVFIEKAAEIIPQVVKSVKQDRTGEEKEIE 402 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CPIC S + R+ K C + +++FVSRD NI GLG + Sbjct: 403 APAHCPICNSVLEREQGLVDLK-------CINKHCPGKIQGEMEYFVSRDGMNISGLGGK 455 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ F + +DI+ L+ R++ ++E + G S+ NL +SI + + S Sbjct: 456 ILEKFLD----LHYLEDVSDIYYLKERKE----ELEQLDKMGKKSIENLLNSIEESKKTS 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 ++ +++LGI VG A+ LAK + L ++ +G+ +A Sbjct: 508 YDKVLYALGIPFVGKVAAKLLAKESKNIFKLQTMTE----------EELQQIEGIGEKMA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++IV+F+QN ++ L+ + G + + K + TGTL K R + Sbjct: 558 RSIVDFFQNEVKKQLIQNLIDIGLCFTLKDGVEASTEAKIWQGKTFLVTGTLSKYTRAEL 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQ 720 QE + + G + +++K D +IVG+ GSKLEKA+ LG V I+ EE FL L ++ Sbjct: 618 QEDIEKSGGTNLSSVTKKLDYLIVGEKAGSKLEKAKALGSVTILTEEDFLALKEK 672 >gi|226950696|ref|YP_002805787.1| DNA ligase, NAD-dependent [Clostridium botulinum A2 str. Kyoto] gi|254781293|sp|C1FLS8|DNLJ_CLOBJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|226842063|gb|ACO84729.1| DNA ligase, NAD-dependent [Clostridium botulinum A2 str. Kyoto] Length = 664 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 205/714 (28%), Positives = 357/714 (50%), Gaps = 58/714 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ +++ L +E++ + YY P I D EYD + P Sbjct: 1 MDNKLEKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK----TEVTLPYS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127 P ++G ++ K TH SL+K N+E L ++ R + ++ + + Sbjct: 57 PTQRVGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELR 116 Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 + + K DG + Y E G + +A RG G GED++A I+ I T+P + N +IE Sbjct: 117 YIVTKKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVPLKIKNNH--VIE 174 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245 V GE ++K F N + P N RN A+G LR L+ + R L+ F + +G Sbjct: 175 VHGEAIMTKTAFEEYNKAA----QVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGY 230 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 K EM+ ++ +G P + +++ + ++SIR L YDIDG V Sbjct: 231 NEGPEFKSYREMMNFIKNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIV 290 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ ++ LG + P+W I++KF K+ +T+LLD++ +GR+G +TP A LEPV +GG Sbjct: 291 VDDIKTREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGG 350 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + ATL+N D IK +++++G +VLV+R+ +VIP+++ ++ ++ Sbjct: 351 VTVKRATLNNMDDIKR-----------KNVKLGAKVLVRRSNDVIPEIMGVVEES-LEES 398 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + P CP C S +V++ + C L+C Q ++ + HF SR+A NI G Sbjct: 399 EEIQAPDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAG 450 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 ++ + F+ D I+ AD++ +++ + + + F D NL D+I Sbjct: 451 FSEKTAEQLFEKLD----IKSIADLYKIKKEELLT------LEKFKDKKSQNLIDAIQNS 500 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 +N L FI++LGI +VG + A L + + ++ N L+ VP VG Sbjct: 501 KNCDLASFIYALGIPNVGKKTANDLVMKFKTLESI----------KNTTIEQLVEVPDVG 550 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +I+A++I +F+++ + I +E LL E+ + K +V TG+L R + Sbjct: 551 EIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMGKTIVVTGSLNNYSRGE 610 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ + LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F ++ Sbjct: 611 IKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFSNKIK 664 >gi|187776813|ref|ZP_02993286.1| hypothetical protein CLOSPO_00329 [Clostridium sporogenes ATCC 15579] gi|187775472|gb|EDU39274.1| hypothetical protein CLOSPO_00329 [Clostridium sporogenes ATCC 15579] Length = 664 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 205/714 (28%), Positives = 352/714 (49%), Gaps = 58/714 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ +++ L +E++ H YY I D EYD + + P Sbjct: 1 MDNKLEKMKELVEELNQHAYEYYVLDNSSISDKEYDLKYDELVVLEKE----TKVTLPYS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR------FWQKKDDNSIF 127 P ++G + K TH SL+K N+ L ++ R + + + Sbjct: 57 PTQRVGDNILGEFGKYTHKGRLWSLDKAQNMSQLTEWHNRNLKTVEQYNSINEDKLPELR 116 Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 + + K DG + Y E G V A RG G GED++A I+ I T+P + N +IE Sbjct: 117 YIVTKKFDGLTVNCTYDENGILVKGASRGTGIIGEDITAQIKTIKTVPLKIKNNH--VIE 174 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK 245 V GE ++K F N + P N RN A+G LR L+ + R L+ F + +G Sbjct: 175 VHGEAILTKTAFEEYNKTA----QVPLKNLRNGAAGALRNLDIKETSKRNLSAFFYDVGY 230 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 K EM++ ++ +G P + +++ + ++SIR L YDIDG V Sbjct: 231 NEGPEFKSYTEMMKFIKNMGLPQDKYIKECTNMEEVEKEIQYIESIREELDYDIDGAVIV 290 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ +K LG + P+W I++KF K+ +T+LLD++ +GR+G +TP A LEPV +GG Sbjct: 291 VDDIKTRKVLGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGG 350 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + ATL+N D I+ +++++G +VLV+R+ +VIP+++ ++ ++ Sbjct: 351 VTVKRATLNNMDDIQR-----------KNVKLGAKVLVRRSNDVIPEIMGVVEES-LEES 398 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + P CP C S +V++ + C L+C Q ++ + HF SR+A NI G Sbjct: 399 KEIEAPDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAG 450 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 ++ + F+ D I+ AD++ +++ + + + FGD NL D+I Sbjct: 451 FSEKTAEQLFEKLD----IKSIADLYKIKKEELLT------LDKFGDKKSQNLIDAIENS 500 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 +N L FI++LGI +VG + A L + + +N L+ VP VG Sbjct: 501 KNCDLPSFIYALGIPNVGKKTANDLVMKFKTLENIESAT----------IEELVEVPDVG 550 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +I+A+++ +F+++ + I +E LL E + K +V TG+L R + Sbjct: 551 EIVAKSVYDFFKDEKIINNIEELLNLGVKPYYEEEIIDENPFMGKTIVVTGSLNNYSRGE 610 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ + LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F ++ Sbjct: 611 IKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAVELGVKVINEEEFSNKIK 664 >gi|256420112|ref|YP_003120765.1| DNA ligase, NAD-dependent [Chitinophaga pinensis DSM 2588] gi|256035020|gb|ACU58564.1| DNA ligase, NAD-dependent [Chitinophaga pinensis DSM 2588] Length = 709 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 232/720 (32%), Positives = 370/720 (51%), Gaps = 57/720 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +I+ L +L + I Y+D YY S P++ D EYD L + A PD + Sbjct: 26 TIQDLDSTLENLRRVIIYNDWRYYVQSDPVLSDYEYDQLFAWLKELETANPDKV---SAD 82 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++ ++ + V H +P LSLE +N +DL + + D I + +EP Sbjct: 83 SPTQRVALGISKNFPTVQHLVPMLSLENSYNADDLNDWDRKAREISGLTD---IEYCIEP 139 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII--EVRGE 190 K DG I++ YE K A RGDG SGED++A IR I +IP I E+RGE Sbjct: 140 KFDGASISLIYENDKLTRGATRGDGVSGEDITANIRQIRSIPLSAHFAAHGIQSIEIRGE 199 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--------RYLNFFVHG 242 V I+KN F A ND+ A P ANPRNAASG LR ++P ++ ++++ V Sbjct: 200 VLINKNTFKAYNDQRAADNLPPLANPRNAASGSLRMVDPREVAKRGLEAFLYHMSYHVMD 259 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 GKT K LQ + LGF ++ ++ Y E + R LPY+IDG Sbjct: 260 DGKTEPQEIKTHSNTLQLLASLGFRSPAKEMKVVKGIQAVIDYVLEFEKERDNLPYEIDG 319 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V KV++++LQ +LG PRW +++KF +QA+++L ++ Q+GRTG +TPVA+++PV Sbjct: 320 MVIKVNDYALQDKLGMTTHHPRWAMAYKFKARQATSKLRRVEFQVGRTGSVTPVAKIDPV 379 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 IGG + + +L NED +K +D+++GD VLV+RAG+VIP +V + + R Sbjct: 380 PIGGVTVGSISLFNEDVVK-----------EKDLKIGDTVLVERAGDVIPYIVKSLADLR 428 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 + FP+ CP+C + + + RC + C AQ +ER+ HFVS+DA Sbjct: 429 DGTEEEIKFPTECPVCNEPLFKPEGE------SVWRCINLM-CEAQVVERMIHFVSKDAM 481 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +I LG+ + F+ ++ I+ + Q E + GFG S+TNL + Sbjct: 482 DIRSLGESNVRKFY----GLGLMKDIPGIYKIDFAQL------EKLEGFGKKSLTNLQSA 531 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I + + L R IF LGIR+VG A++LA + L+ + Sbjct: 532 IEQSKTQPLHRLIFGLGIRYVGETTAKTLANAVNHLLDLKDWTE----------EQLLAL 581 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-NVSSEIENKKLVFTGTLQK 660 +G +A +I +F+ +I ++ L ++ + +FTGTL K Sbjct: 582 EDIGPKVAGSINQFFHLDDSIHMLQELEALGLNLKSTKADHPGGGNLDGQTFLFTGTLNK 641 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQ 719 ++R+ A+ V Q G + + +S K + +IVGD+ GSKLEKA+++ ++I++E++FL L+Q Sbjct: 642 LKRNDAEAMVEQQGGKILSGVSSKLNFLIVGDDAGSKLEKAKKINTIRILSEDEFLNLIQ 701 >gi|168183572|ref|ZP_02618236.1| DNA ligase (NAD(+)) [Clostridium botulinum Bf] gi|237796711|ref|YP_002864263.1| NAD-dependent DNA ligase LigA [Clostridium botulinum Ba4 str. 657] gi|254781290|sp|C3KUA1|DNLJ_CLOB6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|182673387|gb|EDT85348.1| DNA ligase (NAD(+)) [Clostridium botulinum Bf] gi|229263356|gb|ACQ54389.1| DNA ligase, NAD-dependent [Clostridium botulinum Ba4 str. 657] Length = 664 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 206/714 (28%), Positives = 358/714 (50%), Gaps = 58/714 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ +++ L +E++ + YY P I D EYD + + P Sbjct: 1 MDNKLEKMKKLVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKE----TQVTLPYS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127 P ++G ++ K TH SL+K N+E L ++ R + ++ + + Sbjct: 57 PTQRVGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELR 116 Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 + + K DG + Y E G + +A RG G GED++A I+ I T+P + N +IE Sbjct: 117 YIVTKKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVPLKIKNNH--VIE 174 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245 V GE ++K F N + P N RN A+G LR L+ + R L+ F + +G Sbjct: 175 VHGEAIMTKTAFEEYNKAA----QVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGY 230 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 K EM+ +R +G P + +++ + ++SIR L YDIDG V Sbjct: 231 NEGPEFKSYREMMNFIRNMGLPQDKYIKECTNMEEVEKEIEYIESIREELDYDIDGAVIV 290 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ ++ LG + P+W I++KF K+ +T+LLD++ +GR+G +TP A LEPV +GG Sbjct: 291 VDDIKTREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGG 350 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + ATL+N D IK +++++G +VLV+R+ +VIP+++ ++ ++ Sbjct: 351 VTVKRATLNNMDDIKR-----------KNVKLGAKVLVRRSNDVIPEIMGVVEES-LEES 398 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + P CP C S +V++ + C L+C Q ++ + HF SR+A NI G Sbjct: 399 KEIQAPDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAG 450 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 + + F+ D I+ +D++ +++ + + + FGD NL D+I Sbjct: 451 FSGKTAEQLFERLD----IKSISDLYKIRKEELLT------LDKFGDKKSQNLIDAIENS 500 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 +N L FI++LGI +VG + A L + + ++ N L+ VP VG Sbjct: 501 KNCDLASFIYALGIPNVGKKTANDLVMKFKTLESI----------KNTTIEQLVEVPDVG 550 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +I+A++I +F+++ + I +E LL E+ + K +V TG+L R + Sbjct: 551 EIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMGKTIVVTGSLNNYSRGE 610 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ + LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F ++ Sbjct: 611 IKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFSNKIK 664 >gi|319638552|ref|ZP_07993314.1| DNA ligase [Neisseria mucosa C102] gi|317400301|gb|EFV80960.1| DNA ligase [Neisseria mucosa C102] Length = 822 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 238/830 (28%), Positives = 370/830 (44%), Gaps = 162/830 (19%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L ++ + YY P + D+EYD L R +A+ P+L P+ P + Sbjct: 5 AQRIKYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128 +GGE +V H +P LSL ++ + ++ F R+ + Sbjct: 62 VGGEPLSGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVRGGLN---GEKPEY 118 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187 +EPK DG I++ Y G AA RGDG +GEDV+ ++ + IP L PE+IE+ Sbjct: 119 VIEPKFDGLAISLLYRDGVLTQAATRGDGTTGEDVTQNVKTVSNIPLRLHGENIPELIEI 178 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246 RGEV + K DF ALN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 179 RGEVLMLKADFAALNARQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQ 238 Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVY 304 A+ + L + LGF + +G V + E + PY+IDG+V Sbjct: 239 QGGFIAEEHLQELSYCKELGFSLPDGNFGCFPNIDKVLAFYEQMQQKRPTLPYEIDGMVI 298 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + Q++LG +R+PRW I+HKF ++A T + ID+QIGRTG +TPVARL+PV +G Sbjct: 299 KVNSLTQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407 Query: 425 A---------------------------QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR 457 +P+ P+ CPIC+S + R+ A R Sbjct: 408 EANVTVSDGLQDDLFAKTPSETQAKPLHKPYRLPTHCPICRSEIEREEGE------AVAR 461 Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA-DIFTLQRR 516 C+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + + DI TLQ+ Sbjct: 462 CSGGMLCQAQRAQGLIHFASRKAMDIDGLGQKQIEQLVAQDLVRHFADLYRLDIPTLQKM 521 Query: 517 QQTSTTKIENIL------------------------GFGDVSVTNLYDSINKRRNISLER 552 ++ + N N+ I + L R Sbjct: 522 KEMADKASANEEEPSNSEIGDFEGETGNTLLAKNNKKQPTKWAENILAGIEASKTPELAR 581 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA--------------------HNN 592 F+F+LGIRHVG A++LA+ + + ++ I+A Sbjct: 582 FLFALGIRHVGERTAKTLAQAFGTLEHVRHAPEPILACLPDIGTVVAHSIAHFFAQEAQQ 641 Query: 593 DDWLSLIRV--------------------------PL--VGDIIAQAIVE---------- 614 L+ V P + + A A+ E Sbjct: 642 AMIDELLAVGVVPQSQAVTIPPLRHAEPQRWIARLPDFKISETKALALWELAGQSIEGLQ 701 Query: 615 -----------FYQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLVFTGTL 658 + P+N +E + + ++ + K V TGTL Sbjct: 702 TDKALPADWQAWRSKPQNAALLENMKTFFAQTLSNLQDETISDGINEAVAGKTFVLTGTL 761 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 ++R +AQ + G VS +S+KTD ++ G+ GSKLEKAQ LG+ + Sbjct: 762 PTLKRDQAQAMIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKAQTLGIAV 811 >gi|168179082|ref|ZP_02613746.1| DNA ligase, NAD-dependent [Clostridium botulinum NCTC 2916] gi|182670115|gb|EDT82091.1| DNA ligase, NAD-dependent [Clostridium botulinum NCTC 2916] Length = 664 Score = 465 bits (1197), Expect = e-128, Method: Composition-based stats. Identities = 206/714 (28%), Positives = 357/714 (50%), Gaps = 58/714 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ +++ L +E++ + YY P I D EYD + P Sbjct: 1 MDNKLEKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK----TEVTLPYS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127 P ++G ++ K TH SL+K N+E L ++ R + ++ + + Sbjct: 57 PTQRVGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELR 116 Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 + + K DG + Y E G + +A RG G GED++A I+ I T+P + N +IE Sbjct: 117 YIVTKKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVPLKIKNNH--VIE 174 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245 V GE ++K F N + P N RN A+G LR L+ + R L+ F + +G Sbjct: 175 VHGEAIMTKTAFEEYNKAA----QVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGY 230 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 K EM+ ++ +G P + +++ + ++SIR L YDIDG V Sbjct: 231 NEGPEFKSYREMMNFIKNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIV 290 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ ++ LG + P+W I++KF K+ +T+LLD++ +GR+G +TP A LEPV +GG Sbjct: 291 VDDIKTREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGG 350 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + ATL+N D IK +++++G +VLV+R+ +VIP+++ ++ ++ Sbjct: 351 VTVKRATLNNMDDIKR-----------KNVKLGAKVLVRRSNDVIPEIMGVVEES-LEES 398 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + P CP C S +V++ + C L+C Q ++ + HF SR+A NI G Sbjct: 399 EEIQAPDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAG 450 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 K+ + F+ D I+ AD++ +++ + + + F D NL D+I Sbjct: 451 FSKKTAEQLFEKLD----IKSIADLYKIKKEELLT------LEKFKDKKSQNLIDAIQNS 500 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 +N L FI++LGI +VG + A L + + ++ N L+ VP VG Sbjct: 501 KNCDLASFIYALGIPNVGKKTANDLVMKFKTLESI----------KNTTIEQLVEVPDVG 550 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +I+A++I +F+++ + I +E LL E+ + K +V TG+L R + Sbjct: 551 EIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMGKTIVVTGSLNNYSRGE 610 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ + LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F ++ Sbjct: 611 IKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFSNKIK 664 >gi|298369197|ref|ZP_06980515.1| DNA ligase, NAD-dependent [Neisseria sp. oral taxon 014 str. F0314] gi|298283200|gb|EFI24687.1| DNA ligase, NAD-dependent [Neisseria sp. oral taxon 014 str. F0314] Length = 830 Score = 465 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 242/835 (28%), Positives = 373/835 (44%), Gaps = 171/835 (20%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L ++ + YY P + D+EYD L R +A+ P+L P+ P + Sbjct: 5 AQRIKHLTALLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128 +GGE +V H +P LSL ++ + ++ F R+ D + + Sbjct: 62 VGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPEY 118 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187 +EPK DG I++ Y G V AA RGDG +GEDV+ ++ + IP L PE+IEV Sbjct: 119 VIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIEV 178 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246 RGEV + K DF ALN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 179 RGEVLMLKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVARQ 238 Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVY 304 A+ + L + LGF + NG V + E + PY+IDG+V Sbjct: 239 QGGFVAEEHIQELAYFQELGFSLPNGNFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMVV 298 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + Q++LG +R+PRW I+HKF ++A T + ID+QIGRTG +TPVARL+PV +G Sbjct: 299 KVNSLAQQRELGFISRAPRWAIAHKFPAEEALTVVEAIDVQIGRTGTVTPVARLQPVFVG 358 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407 Query: 425 A--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGKL 452 +P+ P+ CPIC S + R+ Sbjct: 408 ETAVAVSDGLKHQQDDLFAETPSANQTQSVPLHKPYRLPTHCPICHSEIEREEGE----- 462 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 463 -AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGQKQIEQLVAQD----LVRHFADLYR 517 Query: 513 LQRRQQTSTTKIENI-------------------------LGFGDVSVTNLYDSINKRRN 547 L + + N+ I + Sbjct: 518 LDIPTLQKMKETADKGSSENENGDAETVSDDLSESNTQNGKKQPTKWAENILAGIEASKT 577 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------------------ 589 L RF+F+LGIRHVG A++LA+ + S ++ + I+A Sbjct: 578 PELARFLFALGIRHVGERTAKTLAQAFGSLEHVRRAPEPILACLPDIGTVVARSIAHFFA 637 Query: 590 --HNNDDWLSLIR--------------------------VPL--VGDIIAQAIVE----- 614 L+ +P + + AQA+ E Sbjct: 638 QDAQQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKS 697 Query: 615 ----------------FYQNPRNICAVEALLKEVSPSIGRHEKNV-----SSEIENKKLV 653 + +N +E L + + ++ V + + K V Sbjct: 698 IEGLQTDKALPADWQAWRSETQNAVLLENLKTFFAQTSSENQDEVFSDDLNEAVAGKTFV 757 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 TGTL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV + Sbjct: 758 LTGTLPILKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVAV 812 >gi|88608555|ref|YP_506384.1| DNA ligase, NAD-dependent [Neorickettsia sennetsu str. Miyayama] gi|123736355|sp|Q2GDR2|DNLJ_NEOSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|88600724|gb|ABD46192.1| DNA ligase, NAD-dependent [Neorickettsia sennetsu str. Miyayama] Length = 670 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 246/708 (34%), Positives = 390/708 (55%), Gaps = 49/708 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A+KE+ L +++ H+ YYQ P I D+EYD++K R + A P L Sbjct: 2 EAKKEIQELYEKLLRHNKKYYQDDSPEITDAEYDSIKDRYLKLLEANPSLGFPVV----- 56 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +G + KV H P LSL I++ E+L ++I + RF K +++ F EPKID Sbjct: 57 --VGYPASEKFQKVKHLSPMLSLRNIFSEEELVEYIEKTKRFLNLK--SALEFLCEPKID 112 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + RY GK V A RGDG GE++ ++ I P + P+++EVRGEV++ Sbjct: 113 GVSFSARYVNGKLVSCATRGDGKIGENIIDNMKVINGFPIEIMDV-PDLLEVRGEVFLDH 171 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 + F L ++NPRNAA+G LR+LNP +IT N + + Q Sbjct: 172 DTFQTLE---------GFSNPRNAAAGSLRQLNP-EITNERNLQYFAYSASKIDGIEHQE 221 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 ++L + GF N ++ I+S+Y+ + RS + YDIDGLVYKV++ L +L Sbjct: 222 DVLHFLSGRGFMTNPLRLASSKVPEIMSFYDSVYRRRSQIKYDIDGLVYKVNDLKLHARL 281 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G + +PRW I+HKF +A T L I + +GRTGI+TPVA L+P+ IGG +I+ A+L+N Sbjct: 282 GTLSDAPRWAIAHKFPSHRAKTILEKIKLSVGRTGIITPVAHLKPITIGGVVISRASLYN 341 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 ED ++ +DIR GD V+V+RAG+VIPKV+++ ++ R + + F FP CP Sbjct: 342 EDELER-----------KDIREGDLVIVERAGDVIPKVLEVDISYRT-NQERFIFPDKCP 389 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S ++R N AA RC C Q ++++KH VS AF+I+G+G + FF Sbjct: 390 SCSSTLIRKNNE------AATRCNNSKKCPEQVIQQIKHLVSAQAFDIDGIGTSHISFFI 443 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + I PADIF L + + +I+ G+G+ SV N+ +I R ISLE+FIF Sbjct: 444 EK----GFISEPADIFRLDKHRD----EIKKYDGWGEKSVENILKNIKNSRKISLEKFIF 495 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 SLGI+++G + A LA+ + S+ N+ ++ +++ + + + +G I +++++F Sbjct: 496 SLGIKNIGEKTAYMLAQQFKSFANWFDKM-SMLKDDTQTEDEIRNLDGMGSCICESLLDF 554 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + + N V++L V I H N+ + KK VFTGTL I R +A+E + + G Sbjct: 555 FSDSDNCNMVKSLSNHV--MITDHTVNIGGSLSGKKFVFTGTLLSITREEAKEIIKKAGG 612 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 +V +S++ D ++ G+ GSKL KA +LG+ I+ E+ + NT Sbjct: 613 IVVNSISKQIDYVVAGEKAGSKLAKANELGIAIIEEKTLIEFTNGNNT 660 >gi|241759788|ref|ZP_04757888.1| DNA ligase, NAD-dependent [Neisseria flavescens SK114] gi|241319796|gb|EER56192.1| DNA ligase, NAD-dependent [Neisseria flavescens SK114] Length = 859 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 240/834 (28%), Positives = 372/834 (44%), Gaps = 170/834 (20%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L ++ + YY P + D+EYD L R +A+ P+L P+ P + Sbjct: 42 AQRIKYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQR 98 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128 +GGE +V H +P LSL ++ + ++ F R++ + Sbjct: 99 VGGEPLAGFDEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVHGGLN---GEKPEY 155 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187 +EPK DG I++ Y G AA RGDG +GEDV+ ++ + IP L PE+IE+ Sbjct: 156 VIEPKFDGLAISLLYRDGVLTQAATRGDGTTGEDVTQNVKTVSNIPLRLHGENIPELIEI 215 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246 RGEV + K DF ALN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 216 RGEVLMLKADFAALNARQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQ 275 Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVY 304 A+ + L + LGF + + V + E + PY+IDG+V Sbjct: 276 QGGFIAEEHLQELSYCKELGFSLPDSNFGCFPNIDEVLAFYEQMQQKRPTLPYEIDGMVV 335 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + Q++LG +R+PRW I+HKF ++A T + ID+QIGRTG +TPVARL+PV +G Sbjct: 336 KVNSLAQQEKLGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 395 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 396 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 444 Query: 425 AQPFSF---------------------------PSFCPICQSRVVRDLNPKTGKLVAAHR 457 S P+ CPIC S + R+ A R Sbjct: 445 ETKISVSDGLQDDLFAETPSETRSEPIHKPYRLPTHCPICHSEIEREEGE------AVAR 498 Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ--- 514 C+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ L Sbjct: 499 CSGGMLCQAQRAQGLIHFASRKAMDIDGLGQKQIEQLVAQD----LVRHFADLYRLDIPT 554 Query: 515 -------------RRQQTSTTKIENILG-------------FGDVSVTNLYDSINKRRNI 548 ++ S ++IE+ G N+ I + Sbjct: 555 LQKMKETADKASANEEEPSNSEIEDFEGETGNTLLAKNVKKQPTKWAENILAGIEASKTP 614 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------------------- 589 L RF+F+LGIR+VG A++LA+ + + +N I+A Sbjct: 615 ELARFLFALGIRYVGERTAKTLAQAFGTLENVRHAPEPILACLPDIGTVVARSIAHFFAQ 674 Query: 590 -HNNDDWLSLIRV--------------------------PL--VGDIIAQAIVE------ 614 L+ V P + + A A+ E Sbjct: 675 KAQQAMIDELLAVGVAPQSQAVTIPPLRHAEPQRWIARLPDFKISETKALALWELAGQSI 734 Query: 615 ---------------FYQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLVF 654 + P+N +E + + ++ + K V Sbjct: 735 EGLQTDKALPADWQTWRNKPQNATLLENMKTFFAQTRSNLQDETISDGINEAVAGKTFVL 794 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 TGTL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKAQ LGV + Sbjct: 795 TGTLPTLKRDQAQAMIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKAQTLGVAV 848 >gi|78187553|ref|YP_375596.1| DNA ligase (NAD+) [Chlorobium luteolum DSM 273] gi|123743616|sp|Q3B278|DNLJ_PELLD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|78167455|gb|ABB24553.1| DNA ligase (NAD+) [Chlorobium luteolum DSM 273] Length = 677 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 215/696 (30%), Positives = 345/696 (49%), Gaps = 50/696 (7%) Query: 31 HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90 H+ YY +KP I D ++D L R + P+L P+ P ++GG + V Sbjct: 24 HNHLYYVEAKPEISDYDFDRLLLRLIELEREHPELV---TPDSPTGRVGGAVTREFPPVE 80 Query: 91 HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150 H P LSL ++I ++ +F R+ R + + E K DG +++ Y G V Sbjct: 81 HREPMLSLSNTYSIGEVEEFSARVGRLLEAEGIRDRDMVAELKFDGVAVSLLYRDGVLVR 140 Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-------IEVRGEVYISKNDFLALND 203 A RG+G G+D++ +R +PT+P L +EVRGEV++ K DF ALND Sbjct: 141 GATRGNGRRGDDITVNLRTVPTVPLRLQTLDTPFSLGEGREVEVRGEVFMRKEDFTALND 200 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263 +ANPRNA +G L+ + ++ +FV + + LQ + Sbjct: 201 TRPE--EDRFANPRNATAGTLKLQDSAEVAVRRLWFVAYYLDGIQDPDTPHFHRLQLLET 258 Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323 GF R I ++ R LPY+ DG+V K+++ K LG ++SPR Sbjct: 259 AGFFTGGHYRLCKGMQEIAAFIARWNEERWHLPYETDGVVLKLNDVRQWKTLGATSKSPR 318 Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383 W I++K+ +QA+T L D+ Q+GR G +TPVA LEPV + G+ ++ +TLHN D ++ L Sbjct: 319 WAIAYKYPAQQATTVLRDVVFQVGRLGTITPVAELEPVRLAGSTVSRSTLHNFDEMRRL- 377 Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443 I +GDRV+++++GEVIPKV+ ++ R DA+ PS CP C + +VR Sbjct: 378 ----------GIMIGDRVVIEKSGEVIPKVIRVVTEARPVDARLVELPSRCPACSTPIVR 427 Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503 + C C AQ R+ HF SR+A +I+ LG+ ++ Sbjct: 428 EEGE------VGFYCPNEAGCPAQLKGRILHFASRNAMDIQNLGEALVEQLV----AFGL 477 Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563 + P D++ LQ Q + N+ G S N+ ++++ R+ S R +F+LGIRHVG Sbjct: 478 VHDPGDLYFLQEPQ------LRNLERMGPKSAQNVVRALDESRSQSYARLLFALGIRHVG 531 Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623 AR LA+ + S + +A V +G +IA++I E+++ P Sbjct: 532 QATARELARAFPSIEALEAASEEELA----------DVADIGPVIARSIREWFEAPAVSA 581 Query: 624 AVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 +E L P K ++S E +VFTG L + R A E V + G + + +S Sbjct: 582 LLEKLRDARLPLAAEDPKPLINSNFEGLSVVFTGALLRHDRQSASELVLERGGKIVSTVS 641 Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +KT +++ G GSKLEKA +LG+++++EE+F +L Sbjct: 642 KKTGLVVAGREAGSKLEKALKLGLRVISEEEFEAML 677 >gi|37520296|ref|NP_923673.1| NAD-dependent DNA ligase LigA [Gloeobacter violaceus PCC 7421] gi|81710991|sp|Q7NMN8|DNLJ_GLOVI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|35211289|dbj|BAC88668.1| DNA ligase [Gloeobacter violaceus PCC 7421] Length = 668 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 208/719 (28%), Positives = 329/719 (45%), Gaps = 78/719 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + +L + YY P + D+ YD R + +P+L P+ P Sbjct: 8 EIEEHTRTLRALLHRWGYAYYVLDAPEVSDAIYDQHYRELVDLESRYPELV---SPDSPT 64 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G + VTH +P SLE ++ +L K+ R+ R + F E KID Sbjct: 65 RRVGERPASAFVSVTHRVPMFSLENAFSQAELEKWGERLLRAIG----PGLEFICELKID 120 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194 G+ + YE G V A RGDG GE+++ +R I IP L +P ++EVRGE +I Sbjct: 121 GSATALSYEDGVLVRGATRGDGVEGEEITQNLRTIRAIPLKLLGGEVPAVLEVRGEAFIP 180 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKG 253 +++F +N E A G K +ANPRNA +G LR+L+ +R L FF + A+ Sbjct: 181 RDEFERINQERQAAGEKLFANPRNACAGTLRQLDSRVVASRRLGFFAY---TAHYGRAES 237 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q+E L ++ GF VN + ++ ++ R LPYD DG+V KV+ F Q+ Sbjct: 238 QWEALAELESHGFRVNPHRSLCRDLAEVRTFCEHWENHRHELPYDTDGVVVKVNAFDHQR 297 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 ++G ++ PRW I+ K+ ++ ST + I +Q+GRTG LTPVA L+PV + G ++ ATL Sbjct: 298 EVGFTSKFPRWAIAFKYPAEEKSTVVEAIAVQVGRTGALTPVAELQPVAVAGTTVSRATL 357 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN+D I+ L D+RVGD V++++AGE+IP+VV +I R P+A P+ FP Sbjct: 358 HNQDRIESL-----------DVRVGDTVIIRKAGEIIPEVVRVIGELRPPEAVPYVFPQT 406 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C + VVR AA RC C A +L H+ + D Sbjct: 407 CPECGTAVVRAPGE------AAVRCPNPR-CPALIRGKLGHWCAALEI------DGIGDK 453 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + AD++ L Q + G S + + +++ R Sbjct: 454 LIARLVSLGLVHTVADLYELSAEQLAG------LERLGARSAAKIVEQLDRSHRQPWSRV 507 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 ++ LG+RH+GA ++ LA+ + S A+ IA + G+ +A+++V Sbjct: 508 LYGLGLRHIGASVSVELARAFASADALARADLAAIA----------SLYGFGEELARSVV 557 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 E++ N +E L G SS + V TGTL + R + + Sbjct: 558 EWFAQAENRALLERLKAHGLQLAGGGRAAQSSALAGLTFVITGTLPTLSREECTALIESH 617 Query: 674 GAVVSAILSRKTDIII-------------VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G G+ GSKL +AQ L V +++EEQ L++ Sbjct: 618 GGK-------------VTSSVSSRTSYVVAGEKAGSKLARAQDLKVAVLDEEQLRALIE 663 >gi|224437677|ref|ZP_03658624.1| NAD-dependent DNA ligase LigA [Helicobacter cinaedi CCUG 18818] gi|313144124|ref|ZP_07806317.1| DNA ligase [Helicobacter cinaedi CCUG 18818] gi|313129155|gb|EFR46772.1| DNA ligase [Helicobacter cinaedi CCUG 18818] Length = 651 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 228/706 (32%), Positives = 358/706 (50%), Gaps = 61/706 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ ++ + L + YY PI DS+YD L + P L P Sbjct: 1 MTQQEYSSNIQKLTKM----AYHYYVLDDPIATDSQYDELYHQVLNFERQNPILI---SP 53 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++GG S K +H SLE ++N +++++ RIY+ + FT Sbjct: 54 NSPTQRVGGTPLESFSKNSHIERMWSLEDVFNQAEMQEWCERIYKSYPHS-----HFTCS 108 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK DG + + Y G V A RGDG GE V++ R I +IP LS++ IE+RGEV Sbjct: 109 PKFDGASLNLLYRDGILVSATTRGDGIVGELVTSNARTIQSIP--LSIDYKGEIEIRGEV 166 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 I+K+DF +N+E + +ANPRNAA+G LR+L+ R L F G+G Sbjct: 167 VIAKDDFEKINNERLEQNLSLFANPRNAAAGSLRQLDSKITAQRKLRFMPWGIGAGL-SQ 225 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 YE LQK+ GF + I+ Y + S R P +DG+V +DE Sbjct: 226 FGSFYEALQKITDFGFAPVPFLTHCEGSDDIMQMYKILISKRDDYPIMLDGMVIMLDEIE 285 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q++LG ++PR+ + KF + S+++LDI +Q+GRTGI+TPVA LEPV I GA+I Sbjct: 286 IQQRLGWTIKAPRFACAFKFPAVEKSSKILDITLQVGRTGIITPVAELEPVEIEGAMIAR 345 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN I+ +DIR+ D V++ R+G+VIPK++ I R P + Sbjct: 346 ATLHNFSEIER-----------KDIRINDEVIIIRSGDVIPKIIKPITALRDGTQIPITK 394 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C+ ++ + L+C A+ +E + HF S+ A NI+GLG++ Sbjct: 395 PTHCPVCRQELLIEE---------IFIKCQNLSCEARVIESIIHFASKKALNIDGLGEKI 445 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F++ I+ DI+ L+ Q + + G+ + NL +I + L Sbjct: 446 VIQLFEN----GLIQSILDIYALEESQLLA------LEGWKEKRAKNLIVAIQNTIGVEL 495 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFI +LGI H+G ++ LA+ + + D+ ++ + G+ +A Sbjct: 496 WRFINALGIEHIGEGASKRLAQSFG------------RDTFSADFQQILGLDGFGEEMAY 543 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++VEF N N + LL+ +SP I + + + K +V TGTL K R + E + Sbjct: 544 SLVEF--NHANKELIAKLLEIISPKIEQIKLDSGHIFYGKSIVLTGTLNK-PRDEIVEML 600 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 GA +S+ +S+KTD +I G+ GSKLEKAQ LGVK ++EE+F+ Sbjct: 601 ESKGAKISSSVSKKTDFVIYGEKAGSKLEKAQNLGVKTLSEEEFMA 646 >gi|149195296|ref|ZP_01872384.1| NAD-dependent DNA ligase LigA [Caminibacter mediatlanticus TB-2] gi|149134560|gb|EDM23048.1| NAD-dependent DNA ligase LigA [Caminibacter mediatlanticus TB-2] Length = 682 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 215/729 (29%), Positives = 353/729 (48%), Gaps = 77/729 (10%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +E + + YY P++ D EYD L + + PD D P +I Sbjct: 6 EEYKKAVETLKKWAYYYYVLDNPLVTDEEYDKLYKEVEEYEKNHPDEV---DKTSPTQRI 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + K H S+E +++ + ++ R+ R +++ F +EPK DG Sbjct: 63 GDVVLDEFKKAKHITKMWSMEDVFDKNEFIDWVNRVKRAIG---NDNFSFYIEPKFDGAS 119 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + + Y+ G+ + A RGDG GEDV+ + I TIP L++ +IE+RGEV I K DF Sbjct: 120 LNLVYKNGELIRAETRGDGEIGEDVTLNAKTIKTIP--LTIKYKGLIEIRGEVVIKKQDF 177 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT----------- 246 LN+E I G +ANPRNAA+G LR+L+P R L F+ G+G Sbjct: 178 DKLNEERIKKGEPTFANPRNAAAGSLRQLDPKITANRPLLFYPWGVGYPIEVLISDEVSK 237 Query: 247 ---------SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV--SYYNEMKSIRSTL 295 K ++ + LGF + YNE IR + Sbjct: 238 EEYERDKKEFIEKFKTYKNIMDFVYSLGFKEPPKRGECKASDIECVLKKYNEFVEIRDEI 297 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 P +DG+V KV+E +L + LG A+ PRWM+++KF + T + D+ +Q+GRTG+LTPV Sbjct: 298 PVMLDGMVVKVNELNLLENLGYTAKYPRWMVAYKFPAIEKETIIEDVIVQVGRTGVLTPV 357 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 A L+P+ IGG ++ ATLHN D I+ + DIR+GDRV+V R+G+VIPK+ Sbjct: 358 AILKPIEIGGVIVERATLHNFDEIERM-----------DIRIGDRVIVIRSGDVIPKITK 406 Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475 ++ ++R + + P+ CP+C S V+ + A L+C A+ + + + Sbjct: 407 VLYHKRTGNEKKIPRPTHCPVCGSEVLDEG---------AIIKCQNLSCPARVVNTIIYA 457 Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 S++ +IEGLG+ ++ ++ D+F L+ E + F Sbjct: 458 ASKNCLDIEGLGESVAKLLYEK----GLVKDIRDLFKLKVEDL------EKLPLFARKKA 507 Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 NL ++I+K + I RF+ +LGI H+G ++ + + + + Sbjct: 508 ENLVNAISKVKGIECWRFVNALGIEHIGEVASKKICEKFG------------VEFYKHSP 555 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655 + G + ++I E+ N +E L+K + P+ + E V+S K +V T Sbjct: 556 EEFYELEGFGPEMVKSIAEY--VKVNKDKIEELIKLIEPTNPKKEV-VNSPFTGKTVVLT 612 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 G++ K R + +E + LGA V+ +S+KTD +IVG++PGSK EKA++LG+ I+ EE Sbjct: 613 GSMSK-SRSEIKEMLENLGAHVTNSVSKKTDYVIVGEDPGSKFEKAKKLGITILKEEDMW 671 Query: 716 FLLQQYNTT 724 ++ N Sbjct: 672 NMIGDGNGD 680 >gi|329120426|ref|ZP_08249092.1| NAD-dependent DNA ligase LigA [Neisseria bacilliformis ATCC BAA-1200] gi|327462110|gb|EGF08438.1| NAD-dependent DNA ligase LigA [Neisseria bacilliformis ATCC BAA-1200] Length = 887 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 244/846 (28%), Positives = 383/846 (45%), Gaps = 162/846 (19%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++ L ++ + YY P + D+EYD L R +A+ A P+L P+ Sbjct: 64 MNDPAAKIRELTDLLNRYGYEYYTLDAPSVPDAEYDRLFRELEALEAAHPELKL---PDS 120 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDN 124 P ++GG +V H +P LSL ++ + ++ F R+ Sbjct: 121 PTQRVGGAPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMTAFDERVRGGLG---GA 177 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPE 183 + + +EPK DG +++ Y G AA RGDG SGEDV+ I+ + IP L + P Sbjct: 178 NPQYVIEPKFDGLAVSLLYRDGVLQQAATRGDGASGEDVTQNIKTVSNIPLRLHGADTPA 237 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHG 242 +IE+RGEV + K DF ALN G+KP+ANPRNAA+G LR+L+ R L+FF + Sbjct: 238 LIEIRGEVLMLKADFAALNRRQEEAGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYS 297 Query: 243 LG-KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDID 300 + + A+ + L+ LGF + G V + E + PY+ID Sbjct: 298 IARQEGGFAAESHIQELEYCGTLGFSLPEGNYGCFGNIAEVLAFYEQMQQKRPALPYEID 357 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V KV+ + Q++LG +R+PRW I+HKF ++A T + ID+QIGRTG +TPVARL+P Sbjct: 358 GMVVKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTTVEAIDVQIGRTGAVTPVARLQP 417 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V +GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +++ Sbjct: 418 VFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVVLER 466 Query: 421 RHPDA--------------------------QPFSFPSFCPICQSRVVRDLNPKTGKLVA 454 R A P+ P CPIC+S + R+ A Sbjct: 467 RPMKAATVSNDTNAQNDLFEQRPSEKTQPAYPPYRLPENCPICRSPIEREEGE------A 520 Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ 514 RC+GG+ CSAQ+ + L HF SR A +I+GLG++Q++ + + + Sbjct: 521 VARCSGGMLCSAQRAQGLIHFASRKAMDIDGLGQKQIEQLVAQDLVRHFADLYRLDVPVL 580 Query: 515 RRQQTSTTKIENI------------LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 ++ + + + EN+ N+ I + L RF+F+LGIRHV Sbjct: 581 QKMKETAEQSENVSDGLSNTSAAKPKKQPTKWAENIIAGIENSKTPELARFLFALGIRHV 640 Query: 563 GAEIARSLAK-------------------------------YYLSYQNFAQEINNIIAHN 591 G A++LA+ ++ + I+ ++A Sbjct: 641 GERTAKTLAQAFGTLDTVRRAPEPVLACLPDIGEVVARSVAHFFAQDAQQAMIDELLAAG 700 Query: 592 NDDWLS---------------LIRVPL--VGDIIAQAIVE-------------------- 614 L R+P + + AQA+ E Sbjct: 701 VAPKTQPATLPVLRHAEPQRWLARLPDFKISETKAQALWELAGKKTDALLTDQALPADWQ 760 Query: 615 -FYQNPRNICAVE---ALLKEV------SPSIGRHEKNV----------SSEIENKKLVF 654 + P+N + A L E+ E ++ + + K V Sbjct: 761 AWRSVPQNETLLRHTIAFLNELDQRSSRGREAAHSESSIADTANLSDGLNEAVAGKTFVL 820 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TGTL ++R +AQ + G VS +S+KTD +I G+ GSKLEKA LGV ++ EE+ Sbjct: 821 TGTLPTLKRDQAQAMIEAAGGKVSGSVSKKTDYVIAGEAAGSKLEKALALGVAVLGEEEL 880 Query: 715 LFLLQQ 720 L +L + Sbjct: 881 LAMLGR 886 >gi|148381215|ref|YP_001255756.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. ATCC 3502] gi|153931904|ref|YP_001385590.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A str. ATCC 19397] gi|153935840|ref|YP_001388996.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A str. Hall] gi|166215576|sp|A7FYL7|DNLJ_CLOB1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215577|sp|A5I6Z7|DNLJ_CLOBH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148290699|emb|CAL84829.1| DNA ligase [Clostridium botulinum A str. ATCC 3502] gi|152927948|gb|ABS33448.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. ATCC 19397] gi|152931754|gb|ABS37253.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. Hall] Length = 664 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 205/714 (28%), Positives = 358/714 (50%), Gaps = 58/714 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ +++ L +E++ + YY P I D EYD + P Sbjct: 1 MDNKLEKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK----TEVTLPYS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127 P ++G ++ K TH SL+K N+E L ++ R + ++ + + Sbjct: 57 PTQRVGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELR 116 Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 + + K DG + Y E G + +A RG G GED++A I+ I T+P + N +IE Sbjct: 117 YIVTKKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVPLKIKNNH--VIE 174 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245 V GE ++K F N + P N RN A+G LR L+ + R L+ F + +G Sbjct: 175 VHGEAIMTKTAFEEYNKAA----QVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGY 230 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 K EM+ ++ +G P + +++ + ++SIR L YDIDG V Sbjct: 231 NEGPEFKSYREMMNFIKNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIV 290 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ ++ LG + P+W I++KF K+ +T+LLD++ +GR+G +TP A LEPV +GG Sbjct: 291 VDDIKTREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGG 350 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + ATL+N D IK +++++G +VLV+R+ +VIP+++ ++ ++ Sbjct: 351 VTVKRATLNNMDDIKR-----------KNVKLGAKVLVRRSNDVIPEIMGVVEES-LEES 398 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + P CP C S +V++ + C L+C Q ++ + HF SR+A NI G Sbjct: 399 KEIQAPDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAG 450 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 ++ + F+ D I+ AD++ +++ + + + F D NL D+I Sbjct: 451 FSEKTAEQLFEKLD----IKSIADLYKIKKEELLT------LEKFKDKKSQNLIDAIQNS 500 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 +N L FI++LGI +VG + A L + + ++ N L+ VP VG Sbjct: 501 KNCDLASFIYALGIPNVGKKTANDLVMKFKTLESI----------KNTTIEQLVEVPDVG 550 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +I+A++I +F+++ + I +E LL E+ + +K +V TG+L R + Sbjct: 551 EIVAKSIYDFFEDEKVISNIEELLNLGVKPYYEEERIDENPFMDKTIVVTGSLNNYSRGE 610 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ + LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F ++ Sbjct: 611 IKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFSNKIK 664 >gi|153940260|ref|YP_001392616.1| NAD-dependent DNA ligase LigA [Clostridium botulinum F str. Langeland] gi|166215578|sp|A7GIK6|DNLJ_CLOBL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|152936156|gb|ABS41654.1| DNA ligase, NAD-dependent [Clostridium botulinum F str. Langeland] gi|295320603|gb|ADG00981.1| DNA ligase, NAD-dependent [Clostridium botulinum F str. 230613] Length = 664 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 206/714 (28%), Positives = 358/714 (50%), Gaps = 58/714 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ +++ L +E++ + YY P I D EYD + P Sbjct: 1 MDNKLEKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK----TEVTLPYS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127 P ++G ++ K TH SL+K N+E L ++ R + ++ + + Sbjct: 57 PTQRVGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELR 116 Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 + + K DG + Y E G + +A RG G GED++A I+ I T+P L + +IE Sbjct: 117 YIVTKKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVP--LKIKNSYVIE 174 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245 V GE ++K F N + P N RN A+G LR L+ + R L+ F + +G Sbjct: 175 VHGEAIMTKTAFEEYNKAA----QVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGY 230 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 K EM+ +R +G P + +++ + ++SIR L YDIDG V Sbjct: 231 NEGPEFKSYREMMNFIRNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIV 290 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ ++ LG + P+W I++KF K+ +T+LLD++ +GR+G +TP A LEPV +GG Sbjct: 291 VDDIKTREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGG 350 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + ATL+N D IK +++++G +VLV+R+ +VIP+++ ++ ++ Sbjct: 351 VTVKRATLNNMDDIKR-----------KNVKLGAKVLVRRSNDVIPEIMGVVEES-LEES 398 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + P CP C S +V++ + C L+C Q ++ + HF SR+A NI G Sbjct: 399 EEIQAPDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAG 450 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 ++ + F+ D I+ AD++ +++ + + + F D NL D+I Sbjct: 451 FSEKTAEQLFEKLD----IKSIADLYKIKKEELLT------LEKFKDKKSQNLIDAIQNS 500 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 +N L FI++LGI +VG + A L + + ++ N L+ VP VG Sbjct: 501 KNCDLASFIYALGIPNVGKKTANDLVMKFKTLESI----------KNTTIEQLVEVPDVG 550 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +I+A++I +F+++ + I +E LL E+ + +K +V TG+L R + Sbjct: 551 EIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMDKTIVVTGSLNNYSRGE 610 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ + LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F ++ Sbjct: 611 IKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFSNKIK 664 >gi|11513386|pdb|1DGS|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase From T. Filiformis gi|11513387|pdb|1DGS|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase From T. Filiformis Length = 667 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 234/720 (32%), Positives = 376/720 (52%), Gaps = 59/720 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E+AR+ ++ L I YH+ YY + P I D+EYD L R + FP+ P Sbjct: 1 MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEFK---SP 57 Query: 72 NGPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G + V H SL+ + E++ F +++ + +T+ Sbjct: 58 DSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAF----EERLEREAEAPSLYTV 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K+DG + + YE+G + + GDG GE+V+ + IPTIPR L P+ +EVRGE Sbjct: 114 EHKVDGLSV-LYYEEGVWSTGS--GDGEVGEEVTQNLLTIPTIPRRLKGV-PDRLEVRGE 169 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLGKTS 247 VY+ FL LN+E+ G K + NPRNAA+G LR+ +P + F+ GLG Sbjct: 170 VYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLGL 229 Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 E K QYE+L ++ GFPV + +A G+ Y + R LP++ DG+V K+ Sbjct: 230 EESGLKSQYELLLWLKEKGFPVEHCYEKALGAEGVEEVYRRGLAQRHALPFEADGVVLKL 289 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ +L +LG AR+PR+ +++KF ++ TRLLD+ Q+GRTG +TPV LEPV I G+ Sbjct: 290 DDLTLWGELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGS 349 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ TLHNE YI+ L DIR+GD VLV +AG VIP+V+ ++ R + Sbjct: 350 EVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGKER 398 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P +P CP C R+V++ HRC L C A++ E ++H+ SR A +IEGL Sbjct: 399 PIRWPEACPECGHRLVKE--------GKVHRCPNPL-CPAKRFEAIRHYASRKAMDIEGL 449 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++ ++ + +R AD++ L++ + G+ S NL I + + Sbjct: 450 GEKLIERLLEK----GLVRDVADLYHLRKEDLLG------LERMGEKSAQNLLRQIEESK 499 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + LER +++LG+ VG +AR+LA+ + + + + + Sbjct: 500 HRGLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELIEVEEVGE---------- 549 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + A+AI+E ++P V L + + E VS + V TG L + R + Sbjct: 550 LTARAILETLKDPAFRDLVRRLKEAGVSMESKEE--VSDLLSGLTFVLTGELSR-PREEV 606 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 + + +LGA V+ +SRKT ++VG+NPGSKLEKA+ LGV ++ EE+F L++ + Sbjct: 607 KALLGRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVAVLTEEEFWRFLKEKGAPVP 666 >gi|297566494|ref|YP_003685466.1| DNA ligase, NAD-dependent [Meiothermus silvanus DSM 9946] gi|296850943|gb|ADH63958.1| DNA ligase, NAD-dependent [Meiothermus silvanus DSM 9946] Length = 670 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 221/719 (30%), Positives = 350/719 (48%), Gaps = 73/719 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A++ + L +EI YH+ YY P+I D+EYD L R + +P+L P+ P Sbjct: 10 EAQRRIHQLREEIRYHNYRYYVLDDPVISDAEYDRLLRELKELEARYPELV---TPDSPT 66 Query: 76 NKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +G G++ S + H P SL+ + ED+R F RI R + LE KI Sbjct: 67 QTVGPGKIETSFAAIPHPTPLYSLDNAFGPEDIRLFEERIARSLGMPA--PFPYVLEYKI 124 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG + + YE+G ++ A RG+G GEDV+ + A+ IP + P +EVRGEVY+ Sbjct: 125 DGLSVNLYYEEGTLLWGATRGNGQVGEDVTPNLMAVEGIPHRVVGAPP-RLEVRGEVYLP 183 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEIFAK 252 FL +N E+ G P+ NPRNAA+G LR+ +P R L ++ +G +E + Sbjct: 184 IETFLKVNAELEEQGLPPFKNPRNAAAGSLRQKDPRVTAKRGLKAVLYSIGLGLAESEVR 243 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E+L+ ++ LGF + ++A + + Y M + R LPY+ DG+V K+D+ LQ Sbjct: 244 SQSELLEYLKHLGFAIEPHYQKAVGWRAVEETYQRMLAKRRQLPYEADGVVVKLDDIRLQ 303 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 LG ++SPRW I++KF ++ TR++ ++ +GRTG +TPVA LEPV+I G+ ++ Sbjct: 304 ADLGFTSKSPRWAIAYKFPAEEKITRVVGVEFTVGRTGRITPVANLEPVDIEGSTVSRVV 363 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN+ Y++ L D+ GD+VL+ +AG VIP+V+ +I R A ++P+ Sbjct: 364 LHNQSYLEEL-----------DLHYGDQVLIHKAGGVIPEVLRVIPEARPKGAVKVTYPT 412 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + +V + H C L C A+ E + H+ SR A +I+GLG++ + Sbjct: 413 RCPECGTPLVLE--------GKIHLCPNPL-CPAKAYEAILHYASRGAMDIQGLGEKLVA 463 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 +R P+D++ L + Q + G+ S NL D I + LER Sbjct: 464 KLLAE----GLVRDPSDLYKLTKEQLMG------LERMGEKSAQNLIDQIEASKGRGLER 513 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F+LGI VGA +AR+LA+ + L V V A+ I Sbjct: 514 LLFALGIPQVGAALARTLARRFGHLDRLLAA----------SVQDLDEVEDVALPTAERI 563 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + +E L S EK ++ V TG L + R + + Sbjct: 564 YQTLHQKDMRAYIERLRAAGV-SFEAKEKPQGDRLKGLTFVLTGELSR-PREEILRRLEA 621 Query: 673 LGA-----------VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA ++ G+ GSKL+KA++LGV +++E LL + Sbjct: 622 LGAKVSSSVSKKTS-----------YVVAGEGAGSKLQKARELGVPVLDEAGLEALLSR 669 >gi|253680829|ref|ZP_04861632.1| DNA ligase, NAD-dependent [Clostridium botulinum D str. 1873] gi|253562678|gb|EES92124.1| DNA ligase, NAD-dependent [Clostridium botulinum D str. 1873] Length = 664 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 201/713 (28%), Positives = 353/713 (49%), Gaps = 58/713 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L E++ YY P + D +YD + L Sbjct: 1 MEVKKQKIYKLVDELNKLAYEYYVLDNPSVADKDYDKKYDELVQLEKETGMLLSY----S 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127 P ++G + K TH SL K ++E+++ + + + + + N I Sbjct: 57 PTQRVGDVVLGKFEKYTHKGKLWSLGKAQSLEEVKDWHNKNIKAINEYNLNHEDKLPPIK 116 Query: 128 FTLEPKIDGTMITIRYEK-GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 + + K DG I Y G V AA RG G GED++ + I T+P L +N +IE Sbjct: 117 YIITKKFDGLTINCTYNNDGILVAAATRGTGEIGEDITLQAKTIKTLP--LKINNNALIE 174 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245 V GE ++K F N P N RN A+G LR LN R L+ F + +G Sbjct: 175 VHGEAIMTKEAFQEYNKVA----DVPLKNLRNGAAGALRNLNVRETARRNLSAFFYDVGY 230 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 K EML+ ++ G P+++ V+ +T I ++ IR L YDIDG+V Sbjct: 231 NEGTPFKTYSEMLKFIKEQGIPMDDYVKPCSTVEEIEKEIKYIEKIRDNLNYDIDGIVIA 290 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 +D+ ++ +G + P+W +++KF ++A+T+L+D++ +GR+G +TP A LEPV IGG Sbjct: 291 IDDMKTREVIGYTVKFPKWALAYKFEAQEATTKLIDVEWNVGRSGRVTPTAILEPVEIGG 350 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + ATL+N D I + +++G V ++R+ +VIP+++ ++ N + Sbjct: 351 VTVKRATLNNMDDISR-----------KGVKLGSVVFLRRSNDVIPEIMGVVENS-LENT 398 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + P CP C S VV++ + C L+C Q ++ + HF SR+A NI G Sbjct: 399 REIKAPEICPYCGSEVVQE--------GVHYFCENTLSCKPQLVKSIVHFGSREAMNIAG 450 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 ++ + F+ D I+ D++ +++ ++ N+ FG+ NL D+I K Sbjct: 451 FSEKTAEQLFEELD----IKSIPDLYRIKKE------ELLNLQRFGEKKAQNLIDAIEKS 500 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 +N L FI++LGI +VG + + L + + + Q + LI + +G Sbjct: 501 KNCDLPSFIYALGIPNVGKKTSIDLCRKFKTLQKLKSAT----------FHDLIAIEDIG 550 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +I+A++I+EF+++ + ++ LL+ + E + K +V TG+L R + Sbjct: 551 EIVAESIIEFFKDDTILKNIDELLELGVNPKFQEENIQENIFNGKTVVVTGSLNSFSRSE 610 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +E + LGA V++ +S+KTD +IVG +PGSK +KA +L VKI++EE+F ++ Sbjct: 611 IKEKLQSLGAKVASSVSKKTDYVIVGKDPGSKYKKAVELNVKIIDEEKFKNMI 663 >gi|170756080|ref|YP_001782894.1| NAD-dependent DNA ligase LigA [Clostridium botulinum B1 str. Okra] gi|254781294|sp|B1ING1|DNLJ_CLOBK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169121292|gb|ACA45128.1| DNA ligase, NAD-dependent [Clostridium botulinum B1 str. Okra] Length = 664 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 204/714 (28%), Positives = 358/714 (50%), Gaps = 58/714 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ +++ L +E++ + YY P I D EYD + P Sbjct: 1 MDNKLEKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK----TEVTLPYS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127 P ++G ++ K TH SL+K N+E L ++ R + ++ + + Sbjct: 57 PTQRVGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELR 116 Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 + + K DG + Y E G + +A RG G GED++A I+ I T+P + + +IE Sbjct: 117 YIVTKKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVPLKIKNSH--VIE 174 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245 V GE ++K F N + P N RN A+G LR L+ + R L+ F + +G Sbjct: 175 VHGEAIMTKTAFEEYNKAA----QVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGY 230 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 K EM+ ++ +G P + +++ + ++SIR L YDIDG V Sbjct: 231 NEGPEFKSYREMMNFIKNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIV 290 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ ++ LG + P+W I++KF K+ +T+LLD++ +GR+G +TP A LEPV +GG Sbjct: 291 VDDIKTREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGG 350 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + ATL+N D IK +++++G +VLV+R+ +VIP+++ ++ ++ Sbjct: 351 VTVKRATLNNMDDIKR-----------KNVKLGAKVLVRRSNDVIPEIMGVVEES-LEES 398 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + P CP C S +V++ + C L+C Q ++ + HF SR+A NI G Sbjct: 399 EEIQAPDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAG 450 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 ++ + F+ D I+ AD++ +++ + + + F D NL D+I Sbjct: 451 FSEKTAEQLFEKLD----IKSIADLYKIKKEELLT------LEKFKDKKSQNLIDAIQNS 500 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 +N L FI++LGI +VG + A L + + ++ N L+ VP VG Sbjct: 501 KNCDLASFIYALGIPNVGKKTANDLVMKFKTLESI----------KNTTIEQLVEVPDVG 550 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +I+A++I +F+++ + I +E LL E+ + +K +V TG+L R + Sbjct: 551 EIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMDKTIVVTGSLNNYSRGE 610 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ + LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F ++ Sbjct: 611 IKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFSNKIK 664 >gi|224418026|ref|ZP_03656032.1| NAD-dependent DNA ligase LigA [Helicobacter canadensis MIT 98-5491] gi|253827358|ref|ZP_04870243.1| DNA ligase, NAD-dependent [Helicobacter canadensis MIT 98-5491] gi|313141565|ref|ZP_07803758.1| DNA ligase polydeoxyribonucleotide synthase [Helicobacter canadensis MIT 98-5491] gi|253510764|gb|EES89423.1| DNA ligase, NAD-dependent [Helicobacter canadensis MIT 98-5491] gi|313130596|gb|EFR48213.1| DNA ligase polydeoxyribonucleotide synthase [Helicobacter canadensis MIT 98-5491] Length = 650 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 229/704 (32%), Positives = 360/704 (51%), Gaps = 60/704 (8%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + ++ YY PI D EYDAL + P + P ++G Sbjct: 6 YLEAIKTLNLWAKHYYILDDPIASDEEYDALYHQIKEFEANNP---TQISKDSPTQRVGD 62 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + S K H SL+ I+N ++L+ +I R+ + D ++ FT++PK DG + Sbjct: 63 RILESFNKSEHIERMWSLDDIFNTQELQDWINRVSK------DENLNFTIDPKFDGASLN 116 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + YE G A RGDG GE+V+ + IP+IP LS+ + IE+RGE I+K+DF A Sbjct: 117 LLYENGILQKATTRGDGFIGEEVTQNAKTIPSIP--LSIPYTDKIEIRGECVIAKDDFEA 174 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQ 259 +N E + G +ANPRNAA+G LR+L+ R L F G+G +I + + +++ Sbjct: 175 INQERLENGEALFANPRNAAAGSLRQLDSKITSKRKLQFIPWGVGF-CQINEESFFALME 233 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 K+R GF + + + I Y + S R + P +DG+V +VD LQK LG Sbjct: 234 KIRSFGFIASPFSKLCSNLQAIEDSYQNLISKRDSYPITLDGMVIRVDNIPLQKSLGFTI 293 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 ++PR+ ++KF + ++LDI +Q+GRTG++TPVA LEPV I GA ++ ATLHN D I Sbjct: 294 KAPRFACAYKFPAIEKKAKILDIVLQVGRTGVITPVAILEPVMIEGAKVSRATLHNFDEI 353 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439 K +DI + D V++ R+G+VIPK++ + R + P+ CPIC S Sbjct: 354 KK-----------KDILINDSVILIRSGDVIPKIIKSLPTLRDGTQKQCKMPTHCPICNS 402 Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 ++ + L C A+ L HF+S+ A NI+GLGK+ +D F+ Sbjct: 403 ELLIEEKLIK---------CQNLNCKARVKNSLIHFISKKALNIDGLGKRIIDLLFE--- 450 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559 I DIF+LQ E + GF D + NL ++I + + I L RFI +LGI Sbjct: 451 -LGKITKIEDIFSLQYEDL------EGLEGFKDKKIHNLLNAIKQAKGIDLWRFINALGI 503 Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 H+G ++ LA + + + + + + G+ +A ++VEF Sbjct: 504 EHIGEGASKKLANTFGN------------DFYHKSFEDFVVLDGFGEEMANSLVEFCHV- 550 Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 N + LL + P + N + + N+ V TGTL + +R QE + LGA VS+ Sbjct: 551 -NQERINHLLAILQPKCNQSTTNAN--LSNQTFVITGTLSQ-KREVYQEILESLGAKVSS 606 Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 +S+KT+ ++ G+ GSKL KAQ+LGVK+++EE F L+Q+ Sbjct: 607 SVSKKTNFLLCGEEAGSKLTKAQELGVKVISEEDFWNLIQETKK 650 >gi|237743296|ref|ZP_04573777.1| NAD-dependent DNA ligase [Fusobacterium sp. 7_1] gi|229433075|gb|EEO43287.1| NAD-dependent DNA ligase [Fusobacterium sp. 7_1] Length = 696 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 215/711 (30%), Positives = 363/711 (51%), Gaps = 50/711 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L ++++ + D YY +K +I D E+D L + +++ +P + P + Sbjct: 29 EKIVKLREDLNKYRDSYYNDNKSLISDYEFDILLKELESLEEKYPQYKEI---SSPTTSV 85 Query: 79 GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 G + KV H P LSL +NI ++ FI RI + K+ + + LE K+DG Sbjct: 86 GASLKENKFKKVEHIHPMLSLANSYNIGEIVDFIERIKKKISKE--QELKYCLEVKLDGL 143 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y +GK V A RGDG GEDV+ I I +I + L I +E+RGEV + Sbjct: 144 SISLTYRQGKLVRAVTRGDGLIGEDVTENILEIASIVKTLPQAI--DMEIRGEVVLPLAS 201 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYE 256 F LN+E + G + +ANPRNAASG LR+L+ + L+ + + L + ++ K E Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKERGLDAYFYFLVEADKLGFKSHSE 261 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++ + +G T I + + R LPY+ DGLV KVDE +L ++G Sbjct: 262 SIKFLESMGIKTTGIFELLETSKEIEKRIDYWEKERENLPYETDGLVIKVDEINLWNEIG 321 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +++PRW I++KF Q ST L + Q+GRTG LTPVA L+ V + G+ + A+LHN Sbjct: 322 FTSKTPRWAIAYKFPAHQVSTVLNGVTWQVGRTGKLTPVAELQEVELSGSKVKRASLHNI 381 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 I+ +DIR+GDRV +++A E+IP++V I +R + + P CP+ Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQIVKSIKEDRTGNEKIIEEPVNCPV 430 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C ++ R+ K C A+ +++FVSRDA NI GLG + ++ F Sbjct: 431 CNHKLEREEGLVDIK-------CVNEECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFID 483 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ DI+ L+ ++ +ENI G S+ NL +SI + +N ++ I++ Sbjct: 484 ----LGYIKTVVDIYDLKNHRE----ALENIDKMGKRSIENLLNSIEESKNRDYDKVIYA 535 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +G ++ LAK + + L + +G+I A I+ F+ Sbjct: 536 LGIAEIGKVTSKILAKASKNIDKLM----------TMTFEELTSIDGIGEIAANEIIAFF 585 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 +N ++ L ++ + + N++ K +FTGTL+ R + +E + + Sbjct: 586 AKEKNQKIIQGLKEKGLKFEIKESETNTQNINPNFAGKNFLFTGTLKHFTREQIKEEIEK 645 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722 LG + +S+ D +IVG+ GSKL+KAQ++ +KI+ EE+F+ L +++ Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696 >gi|237753058|ref|ZP_04583538.1| NAD-dependent DNA ligase LigA [Helicobacter winghamensis ATCC BAA-430] gi|229375325|gb|EEO25416.1| NAD-dependent DNA ligase LigA [Helicobacter winghamensis ATCC BAA-430] Length = 666 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 224/721 (31%), Positives = 354/721 (49%), Gaps = 69/721 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + + ++ YY PI D EYD L + A P Sbjct: 1 MTQDS----YLQAIKTLNLWAKHYYVLDDPIASDEEYDLLYHKVLAYEAQNPQFIAQ--- 53 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G ++ K TH SLE ++N + +++I R R D + F++ Sbjct: 54 DSPTQRVGDKVLEGFNKHTHLKRMWSLEDVFNETETQEWILRAKRGLGLLSDAPLIFSVS 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK DG + + YE G AA RGD GE+V+ R IP+IP LS+ IE+RGE Sbjct: 114 PKFDGASLNLLYEDGILKCAATRGDAFIGENVTQNARTIPSIP--LSIAYKGRIEIRGEC 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 I K+DF ALN E G +ANPRN A+G LR+L+ +R L F G+G+ Sbjct: 172 VIGKDDFEALNLERQNKGETLFANPRNCAAGSLRQLDSKITASRKLQFIPWGVGECDTKD 231 Query: 251 AKG------------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 + +++ + LGF + I + Y + R Sbjct: 232 FMDFASKEKTRNPNSFFALMEGIYALGFQKPPFTELCTNYDSIHTAYQTLLKAREDYAIM 291 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 +DG+V VD F LQ++LG ++PR+ ++KF + ++L I +Q+GRTG++TPVA L Sbjct: 292 LDGMVLCVDAFDLQEKLGFTIKAPRFACAYKFPALEKRAKILSITLQVGRTGVITPVAEL 351 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV + GA I+ ATLHN D I +DI++ D V++ R+G+VIPK++ + Sbjct: 352 EPVLLEGAKISRATLHNFDEIHK-----------KDIQINDFVVLIRSGDVIPKIIKSLP 400 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 R P + P+ CPIC S ++ + L C A+ + HF S+ Sbjct: 401 KLRDGTQYPCATPTQCPICNSTLLIEEKLIK---------CQNLNCPARVKNSITHFASK 451 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A NI+GLG++ ++ F+ + I+ DIFTL+ +E + GF + + NL Sbjct: 452 KALNIDGLGEKIVELLFECKK----IQSIEDIFTLKAND------LEGLEGFKEKKINNL 501 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 ++I K + + L RFI +LGI H+G ++ LA Y + + Sbjct: 502 IEAILKVKGVELWRFINALGIEHIGEGASKKLANAYG------------LEFYKKSYADF 549 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 I + G +A+++VEF N + LL+ ++P+ + + S+I K V TGTL Sbjct: 550 IALDGFGGEMAESLVEFCTV--NQTRLLRLLEYIAPTCN--TQVLESKISGKTFVITGTL 605 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 K +R + QE + LGA VS +S+KTD ++ G++ GSKL KA++LGVKI+N E+ LL Sbjct: 606 PK-KREEYQELLESLGAKVSGSVSKKTDFLLCGEDAGSKLTKAKELGVKIINVEELQALL 664 Query: 719 Q 719 + Sbjct: 665 E 665 >gi|297623824|ref|YP_003705258.1| DNA ligase, NAD-dependent [Truepera radiovictrix DSM 17093] gi|297165004|gb|ADI14715.1| DNA ligase, NAD-dependent [Truepera radiovictrix DSM 17093] Length = 681 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 228/686 (33%), Positives = 346/686 (50%), Gaps = 55/686 (8%) Query: 30 YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89 + YY P + D+E+D L + P+L P+ P ++G S V Sbjct: 20 EANYRYYVLQDPELSDAEWDRLFHELKRLEETHPEL---RTPDSPTQRVGAPPQASFAAV 76 Query: 90 THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149 H P LSL+ +++ L +F R+ R D I + E KIDG I + YE G V Sbjct: 77 RHPHPMLSLDNAFDLAGLEEFEARLKRVL--ATDEEIAYLAELKIDGLSINLLYEGGVLV 134 Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLS------LNIPEIIEVRGEVYISKNDFLALND 203 +AA RGDG +GEDV+ + +P +P+ L +PE++EVRGE+Y+S+ +F +N+ Sbjct: 135 WAATRGDGVTGEDVTFNVLGVPGLPQRLPEALPGGGRVPEVLEVRGELYLSRAEFRRINE 194 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262 E A G P+ NPRNAASG +R+L+P R L F +G+ + + + Q E+L + Sbjct: 195 ERAAAGEPPFKNPRNAASGTIRQLDPRVSAGRKLQVFFYGVAEPRALGVRTQSELLDWLA 254 Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322 GF N +A + ++RSTL Y+ DG+V KVDE +L +LG AR+P Sbjct: 255 AAGFRTNPLRARARGIAALEPLIARWTALRSTLDYEADGVVVKVDELALHDELGSTARAP 314 Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382 RW +++KF ++ T LL + + +GRTG +TPVA LEP I G ++ ATLHN +I L Sbjct: 315 RWAVAYKFPAEEVETTLLGVSLGVGRTGKITPVAELEPRLIEGTEVSRATLHNPGFIAAL 374 Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442 D+RVGDRV+V ++G +IP+V+ ++ R + P+ FP CP C Sbjct: 375 -----------DLRVGDRVMVHKSGGIIPEVIRVLTEARTAELPPYVFPETCPAC----- 418 Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502 + A RC LAC AQ L RL H+ SR A +I GL + L Sbjct: 419 ---GEALIEDGANVRCVN-LACPAQVLARLSHYASRGAMDIAGLSTKTLQKLLDK----G 470 Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 IR D++ L Q + GFG+ S NL +I + + LER + +LG+ HV Sbjct: 471 LIRTIPDLYDLTPEQL------TPLEGFGERSAQNLVAAIARSKTQPLERLLVALGLPHV 524 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 GA A+ LA+ + S + +A P VG+ A+A+ + Q P Sbjct: 525 GARTAQLLARAFGSLEALQAADTADLAAL----------PEVGETTARAVHDALQQPALR 574 Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 + L + S ++ V TGTL + R + +E + LGA V++ +S Sbjct: 575 ALIGELRARGVGGGAAAPR--SDRLKGLTFVLTGTLSE-PRDRLKERLEALGARVASSVS 631 Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKI 708 +KT ++ G++PGSKL+KA+ LGV + Sbjct: 632 KKTSFVVAGEDPGSKLDKARALGVPV 657 >gi|170761523|ref|YP_001788587.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A3 str. Loch Maree] gi|254781295|sp|B1L1H3|DNLJ_CLOBM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169408512|gb|ACA56923.1| DNA ligase, NAD-dependent [Clostridium botulinum A3 str. Loch Maree] Length = 664 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 207/714 (28%), Positives = 357/714 (50%), Gaps = 58/714 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ +++ L +E++ + YY P I D EYD + P Sbjct: 1 MDNKLEKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK----TEVTLPYS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127 P ++G ++ K TH SL+K N+E L ++ R + ++ + + Sbjct: 57 PTQRVGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELR 116 Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 + + K DG + Y E G + +A RG G GED++A I+ I T+P + N IIE Sbjct: 117 YIVTKKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVPLKIKNNH--IIE 174 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245 V GE ++K F N + P N RN A+G LR L+ + R L+ F + +G Sbjct: 175 VHGEAIMTKTAFEEYNKAA----QVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGY 230 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 K EM+ +R +G P + +++ + ++SIR L YDIDG V Sbjct: 231 NEGSEFKNYREMMNFIRNMGLPQDKYIKECTNMEEVEKEIEYIESIREELDYDIDGAVIV 290 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ ++ LG + P+W I++KF K+ +TRLLD++ +GR+G +TP A LEPV +GG Sbjct: 291 VDDIKTREILGYTIKFPKWAIAYKFEAKEITTRLLDVEWNVGRSGRVTPTALLEPVELGG 350 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + ATL+N D IK +++++G +VLV+R+ +VIP+++ + ++ Sbjct: 351 VTVKRATLNNMDDIKR-----------KNVKLGAKVLVRRSNDVIPEIMGVAEES-LEES 398 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + P CP C S +V++ + C L+C Q ++ + HF SR+A NI G Sbjct: 399 KEIQAPDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAG 450 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 ++ + F+ D I+ AD++ +++ + + + F D NL ++I Sbjct: 451 FSEKTAEQLFEKLD----IKSIADLYKIKKEELLT------LEKFKDKKSQNLINAIQNS 500 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 +N L FI++LGI +VG + A L + + ++ N L+ VP VG Sbjct: 501 KNCDLASFIYALGIPNVGKKTANDLVMKFKTLESI----------KNTTIEQLVEVPDVG 550 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +I+A++I +F+++ + I +E LL E+ + +K +V TG+L R + Sbjct: 551 EIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMDKTIVVTGSLNNYSRGE 610 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ + LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F ++ Sbjct: 611 IKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFSNKIK 664 >gi|261380488|ref|ZP_05985061.1| DNA ligase, NAD-dependent [Neisseria subflava NJ9703] gi|284796739|gb|EFC52086.1| DNA ligase, NAD-dependent [Neisseria subflava NJ9703] Length = 822 Score = 463 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 239/834 (28%), Positives = 368/834 (44%), Gaps = 170/834 (20%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L ++ + YY P + D+EYD L R +A+ P+L P+ P + Sbjct: 5 AQRIKYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128 +GGE +V H +P LSL ++ + ++ F R+ + Sbjct: 62 VGGEPLAGFDEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVRGGLN---GEKPEY 118 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187 +EPK DG I++ Y G AA RGDG +GEDV+ ++ + IP L PE+IE+ Sbjct: 119 VIEPKFDGLAISLLYRDGVLTQAATRGDGTTGEDVTQNVKTVSNIPLRLYGENIPELIEI 178 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246 RGEV + K DF ALN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 179 RGEVLMLKADFAALNARQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQ 238 Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVY 304 A+ + L + LGF + +G V + E + PY+IDG+V Sbjct: 239 QGGFIAEEHLQELGYCKELGFSLPDGNFGCFPNINEVLAFYEQMQQKRPTLPYEIDGMVV 298 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + Q++LG +R+PRW I+HKF ++A T + ID+QIGRTG +TPVARL+PV +G Sbjct: 299 KVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407 Query: 425 AQPFSF---------------------------PSFCPICQSRVVRDLNPKTGKLVAAHR 457 S P+ CPIC S + R+ A R Sbjct: 408 ESNISVSDGLQDDLFAETPSETRAEPLHKPYRLPTHCPICHSEIEREEGE------AVAR 461 Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ 517 C+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ L Sbjct: 462 CSGGMLCQAQRAQGLIHFASRKAMDIDGLGQKQIEQLVTQD----LVRHFADLYRLDIPT 517 Query: 518 QTSTTKIENI-----------------------------LGFGDVSVTNLYDSINKRRNI 548 + + N+ I + Sbjct: 518 LQKMKETADKASVNEEEPSNSEIEDFENESGNALLSKTSKKQPTKWAENILAGIEASKTP 577 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------------------- 589 L RF+F+LGIRHVG A++LA+ + + N I+A Sbjct: 578 ELARFLFALGIRHVGERTAKTLAQAFGTLGNVRHAPEPILACLPDIGTVVAHSIAHFFAQ 637 Query: 590 -HNNDDWLSLIRV--------------------------PL--VGDIIAQAIVE------ 614 L+ V P + + A A+ E Sbjct: 638 EAQQAMIDELLAVGVALQSQAVTIPPLRHAEPQRWIARLPDFKISETKALALWELAGQSI 697 Query: 615 ---------------FYQNPRNICAVEALLKEVSPSIGRHEKN-----VSSEIENKKLVF 654 + P+N +E + + ++ + + ++ I K V Sbjct: 698 EGLQSDKALPADWQTWRSKPQNAALLENMKTFFAQTLSKLQDETISDGINETIAGKTFVL 757 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 TGTL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKAQ LGV + Sbjct: 758 TGTLPTLKRDQAQAMIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKAQTLGVAV 811 >gi|238917130|ref|YP_002930647.1| DNA ligase (NAD+) [Eubacterium eligens ATCC 27750] gi|238872490|gb|ACR72200.1| DNA ligase (NAD+) [Eubacterium eligens ATCC 27750] Length = 669 Score = 463 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 200/714 (28%), Positives = 340/714 (47%), Gaps = 62/714 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +E S L++ I YH D YY +P I D EYD L R I P+ S + P KI Sbjct: 5 QEYSELKKTIDYHMDRYYNQDEPEISDYEYDKLMIRLKEIEKEHPEWVTS---DSPSQKI 61 Query: 79 GGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 GG + + KVTH++P LS+E +++ + + ++ +++ F++E KIDG Sbjct: 62 GGTVKREAGVKVTHNVPMLSIEDVFSEDAVCAWVDKVH-----AMHPDCTFSVETKIDGL 116 Query: 138 MITIRYE---KGKFVY--AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 +++RY GK A RGDG GEDV+A R + + + + + +E+RGEVY Sbjct: 117 SMSLRYVKEADGKLHLHLAETRGDGLIGEDVTANARVVGDVLQ-VIDLPYDSLELRGEVY 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 +S DF N+E + +K ANPRN A+G LR+L+ + R L F+ + + Sbjct: 176 MSHEDFEKYNEEQERLEKKTAANPRNLAAGTLRQLDTSITKKRGLKIFIFNVQDGPDEIM 235 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + + ++ G PV + T +V +E+ +R LPYDIDG V K+D + Sbjct: 236 ESHGRGMDILKAAGVPVVYH-KICKTKEEVVRAIDEIGRMREELPYDIDGAVVKIDHIAF 294 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE------PVNIGG 365 +++ ++ I++K+ ++ + DI + +GRTG LT P + G Sbjct: 295 RQEFPAGSKYSSGHIAYKYPPEEKVIVMDDILVDVGRTGKLTFTGIFHDPETGKPARLCG 354 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ ATLHN+DYI + ++ +G + ++GE+IPK+ + Sbjct: 355 TSVSRATLHNQDYITQM-----------NVGIGGEYKLFKSGEIIPKLNGCVKAP----E 399 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 F P CP+C ++R+ + A RC +C+AQ + +F S D NI G Sbjct: 400 HVFEAPKVCPVCGEPLIREED------TADIRCVNP-SCAAQLSRTVAYFTSLDCMNIMG 452 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG+ +D K I ADI+ L+ + K + + L +I K Sbjct: 453 LGETLVDALIKD----GYIHNYADIYALKEHRDELIEKGII---GKEKNTDKLLAAIEKS 505 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + + +R + +LGIR+VG A+ + YY + A L +P +G Sbjct: 506 KENTPDRLLTALGIRNVGKNTAKQIMNYYDNLMELADAGE----------EELQNIPDIG 555 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A+ I +F+ + NI +E L + +K +S ++E K +V TG+ R Sbjct: 556 ATTAKCIHDFFHDEANIELLERLKQSGLNMQMPEKKEMSDKLEGKTIVVTGSFDNYSRKD 615 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + G + +S+KTD ++ G+ GSKL+KA LGVK++ ++F+ +++ Sbjct: 616 MEELIVSNGGKATGSVSKKTDYLVAGEAAGSKLDKANSLGVKVLTIDEFMEMIK 669 >gi|258651684|ref|YP_003200840.1| DNA ligase, NAD-dependent [Nakamurella multipartita DSM 44233] gi|258554909|gb|ACV77851.1| DNA ligase, NAD-dependent [Nakamurella multipartita DSM 44233] Length = 736 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 212/727 (29%), Positives = 342/727 (47%), Gaps = 63/727 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A + L Q I+ YY P + D E+D + R D + +P L P+ P Sbjct: 22 EAAHRHAELTQIITDAQFRYYVLDAPTMSDGEFDTVLRELDGLEEQYPSL---RTPDSPT 78 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG V H+ LSL+ +++ ++L ++ R R + + E KID Sbjct: 79 QRVGGGFATEFGAVEHAERLLSLDNVFSADELAGWLARTAR----DAGTPVSWLTELKID 134 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEV 191 G + + YE+G+ + AA RGDG GEDV+ +R I +P L + +PE +E+RGEV Sbjct: 135 GLAVNLTYERGRLIRAATRGDGRVGEDVTLNVRTIAAVPERLRDDGAHDVPEFVEIRGEV 194 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 + F LN ++A G+ P+ANPRN+A+G LR+ +P +R L HG+G Sbjct: 195 FFPLEAFEELNASLVAAGKAPFANPRNSAAGSLRQKDPRVTASRRLTMLCHGIGARVGFD 254 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q + ++R G P+++ + T + R L +DIDGLV KVDE + Sbjct: 255 ITRQSQAYDRLRSWGLPISDHNQVVQTEQEVADRIAYWAEHRHDLSHDIDGLVVKVDEVA 314 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q++LG +R+PRW I++K+ ++A+T L DI + +GRTG +TP A LEPV I G+ + Sbjct: 315 VQRRLGSTSRAPRWAIAYKYPPEEATTLLRDIQVNVGRTGRVTPFAVLEPVLIAGSTVGM 374 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA-QPFS 429 ATLHN+D ++ + +++GD V+V++AG+VIP+++ +V+ R + F Sbjct: 375 ATLHNQDEVRR-----------KGVQIGDTVVVRKAGDVIPEILGPVVDLREGRTLREFV 423 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + + + RC +C AQ ER+ H R AF+IEG+G + Sbjct: 424 MPTHCPECGTALA-----PAKENDVDIRCPNSRSCPAQLRERVFHLAGRGAFDIEGMGYE 478 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + A +I DIF L + G + L ++ ++ Sbjct: 479 A----AVALLAAGAITDEGDIFDLDEDRLLGVPLFTTKAGALSANGRKLLANLQICKDQP 534 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R + +L IRHVG AR+LA+ + S +A VG IA Sbjct: 535 LWRVLVALSIRHVGPTAARALAQQFGSLPAIRAAAQEELAAAE----------GVGPTIA 584 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 A++E++ + V+ + +V TG L R +A+ Sbjct: 585 DAVIEWFTVDWHRQIVDKWAAAGVRMQDEITDRPEQTLAGLSVVVTGGLDGFSRDEAKAA 644 Query: 670 VTQLGAVVSAILSRK----------TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + G T ++VGD+PGSK +KA LGV I++E F LL+ Sbjct: 645 LLSRG----------AKAAASVSAKTAFVVVGDSPGSKYDKALGLGVPILDEAGFRVLLE 694 Query: 720 QYNTTLR 726 + R Sbjct: 695 RGPDAAR 701 >gi|58584805|ref|YP_198378.1| NAD-dependent DNA ligase, Lig [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75497767|sp|Q5GS88|DNLJ_WOLTR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|58419121|gb|AAW71136.1| NAD-dependent DNA ligase, Lig [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 683 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 263/720 (36%), Positives = 397/720 (55%), Gaps = 57/720 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +E+ +E + L +ISYHD Y+Q SKP I D+EYD LK++ + P ++D Sbjct: 3 DLEKMIEEFTKLRDQISYHDVLYHQKSKPEIADAEYDKLKQKLVEMEGQLPGACVTQDG- 61 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 +G + K+ H P LSLE ++ + + +F++RI RF ++ I EP Sbjct: 62 -----VGAAPDEKFSKIKHREPMLSLENAYDEQGVERFLSRIKRFLIEE---EIEVFCEP 113 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG + YE G+FV AA RGDG GEDV+ + I PR L + +EVRGE+Y Sbjct: 114 KIDGLSFSAVYEDGRFVKAATRGDGFIGEDVTRNVATIKGFPRFLQDV-QDRLEVRGEIY 172 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 I+ +DFL LN +ANPRNAA+G L++L+ + + K Sbjct: 173 INNSDFLKLNK------DNEFANPRNAAAGSLKQLDVSITANRP--LKYFAYSLIGGKEK 224 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E+L ++ LGF VN N G++ +YN++ + R +L YDIDG+VYKV++ LQ Sbjct: 225 SQSEVLNRLESLGFCVNEHRSLTNNLSGMLEFYNKVYNCRYSLDYDIDGIVYKVNDLILQ 284 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG ++PR +++KF+ A T+L I IQ+GRTG+LTPVA L PVNIGG L++ A Sbjct: 285 SRLGSTHKAPRSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLIPVNIGGVLVSRAN 344 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN+D IK +D+R GD V +KRAG+VIP++V + RH DA F FP Sbjct: 345 LHNQDEIKR-----------KDVREGDIVTIKRAGDVIPQIVRVDKGSRHADAPGFVFPE 393 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +V + AA RC+ L C AQ + +L HFVS+ AF+I GLG++Q+ Sbjct: 394 ICPECGGKVQAE--------GAAIRCSEELTCKAQIIGKLSHFVSKGAFDIFGLGEKQIK 445 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 FF+ I+ DIF L+ R + K + +G+ S+ NL ++I RR I+L+R Sbjct: 446 FFYD----LGLIKQIPDIFNLEERLNEFSLKEQ--PDWGERSIANLLNAIQNRRVITLDR 499 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND-------------DWLSLI 599 FIFSLGIR +G A LA YY+SY N+ + +++++ + L+ Sbjct: 500 FIFSLGIRFIGQVAAELLANYYVSYNNWYNSMIKLLSNDAEVGVGGVEKKIAKSFSDELV 559 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 + +G+ +A+++ F+ NI ++ L + + S K +VFTG L Sbjct: 560 GIDGIGEKVAESLKSFFSKEHNIKMLKDLTDYLQILSVNSNSSNSVLNN-KVIVFTGKLL 618 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R +A+ LGA VS+ LS K D ++ G+ PG+K +KA +LGV I+NE+Q+ ++ Sbjct: 619 TMSRGEAKVRAKALGAKVSSNLSAKIDYLVAGEKPGNKYKKAVELGVGILNEDQWYRMIN 678 >gi|322807581|emb|CBZ05156.1| DNA ligase [Clostridium botulinum H04402 065] Length = 664 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 204/714 (28%), Positives = 358/714 (50%), Gaps = 58/714 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ +++ L +E++ + YY P I D EYD + P Sbjct: 1 MDNKLEKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK----TEVTLPYS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127 P ++G ++ K TH SL+K N+E L ++ R + ++ + + Sbjct: 57 PTQRVGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELR 116 Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 + + K DG + Y E G + +A RG G GED++A I+ I T+P + + +IE Sbjct: 117 YIVTKKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVPLKIKNDH--VIE 174 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245 V GE ++K F N + P N RN A+G LR L+ + R L+ F + +G Sbjct: 175 VHGEAIMTKTAFEEYNKAA----QVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGY 230 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 K EM+ ++ +G P + +++ + ++SIR L YDIDG V Sbjct: 231 NEGPEFKSYREMMNFIKNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIV 290 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ ++ LG + P+W I++KF K+ +T+LLD++ +GR+G +TP A LEPV +GG Sbjct: 291 VDDIKTREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGG 350 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + ATL+N D IK +++++G +VLV+R+ +VIP+++ ++ ++ Sbjct: 351 VTVKRATLNNMDDIKR-----------KNVKLGAKVLVRRSNDVIPEIMGVVEES-LEES 398 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + P CP C S +V++ + C L+C Q ++ + HF SR+A NI G Sbjct: 399 EEIQAPDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAG 450 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 ++ + F+ D I+ AD++ +++ + + + F D NL D+I Sbjct: 451 FSEKTAEQLFEKLD----IKSIADLYKIKKEELLT------LEKFKDKKSQNLIDAIQNS 500 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 +N L FI++LGI +VG + A L + + ++ N L+ VP VG Sbjct: 501 KNCDLASFIYALGIPNVGKKTANDLVMKFKTLESI----------KNTTIEQLVEVPDVG 550 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +I+A++I +F+++ + I +E LL E+ + +K +V TG+L R + Sbjct: 551 EIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMSKTIVVTGSLNNYSRGE 610 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ + LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F ++ Sbjct: 611 IKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFSNKIK 664 >gi|304440548|ref|ZP_07400435.1| NAD-dependent DNA ligase LigA [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371026|gb|EFM24645.1| NAD-dependent DNA ligase LigA [Peptoniphilus duerdenii ATCC BAA-1640] Length = 650 Score = 462 bits (1188), Expect = e-127, Method: Composition-based stats. Identities = 205/696 (29%), Positives = 344/696 (49%), Gaps = 56/696 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K + L + ++ + YY +P++ D EYD L + P+ P N++ Sbjct: 3 KRIDELVELLNKYSYHYYTLDEPLVADVEYDRLYDELVKLEKE----TGYIRPDSPTNRV 58 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GGE+ K TH P S++K + ++LR + R R I + +E K DG Sbjct: 59 GGELLTGFVKHTHLSPLYSMDKAQSFDELRAWEERNMRLL--PGVKDIDYVVELKFDGLT 116 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I + Y G A+ RG+G GE++ ++ I ++P LS+ + EV+GE + F Sbjct: 117 INLTYNNGILENASTRGNGLIGEEILPQVKTINSVP--LSIEYKGLFEVQGEGLMPFKAF 174 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257 N+ + NPRNAA+G LR L+P R L+ + + +G K EM Sbjct: 175 NKYNETA----EEVLKNPRNAAAGALRNLDPKVTRKRNLDAYFYNVGYIEGREFKTDTEM 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 + +R F VN + N+++ +R +L IDG KVD++SL+++LG Sbjct: 231 KEFLREQKFKVNPIYYHVKNIDEAIECINKIEEMRDSLDVLIDGATIKVDDYSLRERLGY 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 + PRW +++K+ K+ +T+LLD+ +GRT +TP A LEPV IGG I ATL+N D Sbjct: 291 TNKFPRWAVAYKYEAKEVTTKLLDVIWNVGRTAKVTPSAILEPVEIGGVTIQRATLNNFD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ + +R+G RVL++R+ +VIP+++ + ++ + P+ CP C Sbjct: 351 DIQR-----------KKLRLGSRVLLRRSNDVIPEILGAVPSD--EKTEEIKLPTHCPYC 397 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S + K C L+C Q + R+ HF SRDA NIEGL + Sbjct: 398 GSELY--------KDGVHIFCPNTLSCLPQLIGRIVHFTSRDAMNIEGLSDKTAAVLISD 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 D I+ +D++ + + S + GF D NL + + K ++++L F+++L Sbjct: 450 LD----IKEVSDLYDITKENLMS------LEGFKDKKSDNLLEQLEKSKDVNLSNFVYAL 499 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI +VG + AR LA ++ S + L+ + VG I A I EF+ Sbjct: 500 GIHNVGIKAARDLADHFKSLEGLMNATE----------EELVSIDDVGPITAHEIYEFFH 549 Query: 618 NPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + R +++ L+ +P K+ +S K+V TG L + R + ++ + LGA Sbjct: 550 DERIKDSIKKLIDHGITPKYVDVAKDSNSNFAGLKIVLTGKLSR-PRKEIEKELLSLGAE 608 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V +S+ TD++I+G+N GSK +KA++LG+KI++E+ Sbjct: 609 VVGSVSKNTDLVIIGENAGSKADKARELGIKIIDEK 644 >gi|317062114|ref|ZP_07926599.1| NAD-dependent DNA ligase [Fusobacterium ulcerans ATCC 49185] gi|313687790|gb|EFS24625.1| NAD-dependent DNA ligase [Fusobacterium ulcerans ATCC 49185] Length = 665 Score = 462 bits (1188), Expect = e-127, Method: Composition-based stats. Identities = 220/707 (31%), Positives = 348/707 (49%), Gaps = 50/707 (7%) Query: 25 EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN- 83 ++ ++ YY ++ +I D EYD L + +P+ P +G Sbjct: 2 RADLLKYNQYYYTNNESLISDVEYDMLMNELKELEEKYPEYK---SEASPTVIVGASNLR 58 Query: 84 -LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 KVTH P LSL +N E++ FI RI R +++D I + LE K+DG I+I+ Sbjct: 59 ENKFQKVTHKKPMLSLSNTYNEEEIGDFIDRIKRLLPERED--IKYALELKLDGLSISIQ 116 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 YEKGK V RGDG GEDV+ I I TIP L + +E+RGE+ + + F +LN Sbjct: 117 YEKGKLVRGVTRGDGAIGEDVTENIMEIETIPHTLKEPL--DMEIRGEIVLPISRFESLN 174 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEMLQKM 261 + + G + +ANPRNAASG LR+++ + I L+ + + + + E ++ + Sbjct: 175 ERRMEAGEEVFANPRNAASGTLRQIDASIIKERGLDCYFYFIVDAKNYGIQTHSESIKYL 234 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 LG +T + + + + L Y+ DG+V KVD L +LG +S Sbjct: 235 ESLGIKTTGVCEVLDTASALKKRIDYWEQEKEKLDYETDGMVIKVDNLDLWDELGNTTKS 294 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW I++KF KQ +T LL I Q+GRTG +TPVA LE V + G+ + A+LHN I+ Sbjct: 295 PRWAIAYKFPAKQVTTTLLGITWQVGRTGKVTPVAELEEVALSGSKVKRASLHNFHEIER 354 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +DIR+GD+V +++A E+IP+VV I R + + P CP+C S V Sbjct: 355 -----------KDIRIGDKVFIEKAAEIIPQVVKSIKEFRDGSEKMITEPDKCPVCGSPV 403 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 R+ K C + R+++FVSRDA NI G G + ++ + Sbjct: 404 AREEGQVDIK-------CTNPVCPGKVKGRIEYFVSRDAMNIGGFGSKMVEKMLE----L 452 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 I+ DI+ L+ ++ +ENI G SV NL DSI + + I++LGI Sbjct: 453 SFIKNVGDIYDLKDHKE----DLENIEKMGKRSVENLLDSIEASKKRDYSKVIYALGIPF 508 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 +G + LA+ + N + + LI + +GD A+A+ +F ++ N Sbjct: 509 IGKYSGKLLAEASRNIDNLMK----------MEIEELIEIDGIGDKGAKAVYDFLRDEEN 558 Query: 622 ICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 I + L E K +FTGTL+ +R + +E + +LG Sbjct: 559 IELINILKGHGLQFAMEEKEEEDQSEKIFSGKTFLFTGTLKNFKREEIKEEIEKLGGKNL 618 Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQYNTT 724 + +S+ D +I+G+ GSKL+KAQ+LG VKI+ EE+F+ + + N Sbjct: 619 SAVSKNLDYLIIGEKAGSKLKKAQELGTVKILTEEEFVEICKNNNKN 665 >gi|325510083|gb|ADZ21719.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum EA 2018] Length = 669 Score = 462 bits (1188), Expect = e-127, Method: Composition-based stats. Identities = 211/717 (29%), Positives = 357/717 (49%), Gaps = 59/717 (8%) Query: 12 LSIEQA-RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ++ +++ + L +E++ + YY PI+ D EYD + Sbjct: 1 MNEKESNILRMQELIEELNKYSYSYYVLDNPIVADKEYDKRYDELVELEEK----TGITY 56 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------ 124 P P N++G + K TH SL+K + E++ + R + + + N Sbjct: 57 PYSPTNRVGDVILKQFQKYTHKSRLWSLDKAQSFEEIIDWHNRNKKAVAEYNSNHEDKLP 116 Query: 125 SIFFTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 + + L K DG I Y E G + AA RG G GED+++ + I +IP L + Sbjct: 117 ELKYVLTKKFDGLTINCTYDESGVMIKAATRGTGVIGEDITSQAKTIKSIP--LKIKNGS 174 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHG 242 ++EV GE ++K F N + P N RN A+G LR LN R L+ F + Sbjct: 175 VVEVHGEAIMTKTAFNEYNKKA----EVPLKNLRNGAAGALRNLNVRETARRNLSAFFYD 230 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 +G K EM+ ++ +GFPV+ +++ NT I + IRS+L YDIDG+ Sbjct: 231 VGYNEGKAFKSYMEMMNFIKEMGFPVDEYLKECNTIEEINKEIQYVGDIRSSLDYDIDGV 290 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V +D++ ++ LG + P+W I++KF ++A+T+LLD++ +GR+G ++P A LEPV Sbjct: 291 VIVIDDYRTREYLGYTVKFPKWAIAYKFEAEEATTKLLDVEWNVGRSGRVSPTAILEPVE 350 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G ++ ATL+N D I G + +++G RV V+R+ +VIP+++ + Sbjct: 351 LAGVIVKRATLNNMDDI-----------GRKKVKIGSRVFVRRSNDVIPEIMGVTEETEG 399 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 + P+ CP C S +V++ C L+C Q ++ + HF SR+A N Sbjct: 400 ETNEI-EAPTICPYCGSEIVKE--------GVHLFCENTLSCKPQMVKSIVHFASREAMN 450 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEG ++ + F+ +I+ +D++ + + + S + F D +NL ++I Sbjct: 451 IEGFSEKTAEQLFEK----LNIKSISDLYRITKEELMS------LDKFKDKKASNLINAI 500 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 K + L F++SLGI +VG + A L K + S++N + + LI V Sbjct: 501 EKSKKCDLASFVYSLGIPNVGKKTATDLCKQFKSFENIKKA----------SYDELILVQ 550 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +G I+A++IVEF++ + ++ L + + V + K +V TGTLQ Sbjct: 551 DIGSIVAESIVEFFKQEKIEKSLNELFELGVTPFYEESEVVENAFTGKTVVATGTLQNYS 610 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +E + LGA V+ +S+KTD +I G+N GSK +KA QLGVKI+ EE+F L+ Sbjct: 611 RTAIKEKLESLGANVAGSVSKKTDYVIAGENAGSKYDKAVQLGVKILTEEEFEELIN 667 >gi|15895931|ref|NP_349280.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum ATCC 824] gi|81529669|sp|Q97FQ5|DNLJ2_CLOAB RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 2 gi|15025704|gb|AAK80620.1|AE007765_2 NAD-dependent DNA ligase [Clostridium acetobutylicum ATCC 824] Length = 669 Score = 462 bits (1188), Expect = e-127, Method: Composition-based stats. Identities = 211/717 (29%), Positives = 357/717 (49%), Gaps = 59/717 (8%) Query: 12 LSIEQA-RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ++ +++ + L +E++ + YY PI+ D EYD + Sbjct: 1 MNEKESNILRMQELIEELNKYSYSYYVLDNPIVADKEYDKRYDELVELEEK----TGITY 56 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------ 124 P P N++G + K TH SL+K + E++ + R + + + N Sbjct: 57 PYSPTNRVGDVILKQFQKYTHKSRLWSLDKAQSFEEIIDWHNRNKKAVAEYNSNHEDKLP 116 Query: 125 SIFFTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 + + L K DG I Y E G + AA RG G GED+++ + I +IP L + Sbjct: 117 ELKYVLTKKFDGLTINCTYDESGVMIKAATRGTGVIGEDITSQAKTIKSIP--LKIKNGS 174 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHG 242 ++EV GE ++K F N + P N RN A+G LR LN R L+ F + Sbjct: 175 VVEVHGEAIMTKTAFNEYNKKA----EVPLKNLRNGAAGALRNLNVRETARRNLSAFFYD 230 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 +G K EM+ ++ +GFPV+ +++ NT I + IRS+L YDIDG+ Sbjct: 231 VGYNEGKAFKSYMEMMNFIKEMGFPVDEYLKECNTIEEINKEIQYVGDIRSSLDYDIDGV 290 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V +D++ ++ LG + P+W I++KF ++A+T+LLD++ +GR+G ++P A LEPV Sbjct: 291 VIVIDDYRTREYLGYTVKFPKWAIAYKFEAEEATTKLLDVEWNVGRSGRVSPTAILEPVE 350 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G ++ ATL+N D I G + +++G RV V+R+ +VIP+++ + Sbjct: 351 LAGVIVKRATLNNMDDI-----------GRKKVKIGSRVFVRRSNDVIPEIMGVTEETEG 399 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 + P+ CP C S +V++ C L+C Q ++ + HF SR+A N Sbjct: 400 ETNEI-EAPTICPYCGSEIVKE--------GVHLFCENTLSCKPQMVKSIVHFASREAMN 450 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEG ++ + F+ +I+ +D++ + + + S + F D +NL ++I Sbjct: 451 IEGFSEKTAEQLFEK----LNIKSISDLYRITKEELMS------LDKFKDKKASNLINAI 500 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 K + L F++SLGI +VG + A L K + S++N + + LI V Sbjct: 501 EKSKKCDLASFVYSLGIPNVGKKTATDLCKQFKSFENIKKA----------SYDELILVQ 550 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +G I+A++IVEF++ + ++ L + + V + K +V TGTLQ Sbjct: 551 DIGSIVAESIVEFFKQEKIEKSLNELFELGVTPFYEESEVVENAFTGKTVVATGTLQNYS 610 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +E + LGA V+ +S+KTD +I G+N GSK +KA QLGVKI+ EE+F L+ Sbjct: 611 RTAIKEKLESLGANVAGSVSKKTDYVIAGENAGSKYDKAVQLGVKILTEEEFEQLIN 667 >gi|256028750|ref|ZP_05442584.1| preprotein translocase subunit SecA [Fusobacterium sp. D11] gi|289766653|ref|ZP_06526031.1| NAD-dependent DNA ligase [Fusobacterium sp. D11] gi|289718208|gb|EFD82220.1| NAD-dependent DNA ligase [Fusobacterium sp. D11] Length = 696 Score = 462 bits (1188), Expect = e-127, Method: Composition-based stats. Identities = 219/711 (30%), Positives = 364/711 (51%), Gaps = 50/711 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L ++++ + D YY +K +I D E+D L + +++ +P + P + Sbjct: 29 EKIVKLREDLNKYRDSYYNDNKSLISDYEFDILLKELESLEEKYPQYKEI---SSPTTSV 85 Query: 79 GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 G + KV H P LSL +NI ++ FI RI + KK + + LE K+DG Sbjct: 86 GASLKENKFKKVEHIHPMLSLANSYNIGEIVDFIERIKKKISKK--QELKYCLEVKLDGL 143 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y +GK V A RGDG GEDV+ I I +I + L I +E+RGEV + Sbjct: 144 SISLTYRQGKLVRAVTRGDGLIGEDVTENILEIASIVKTLPQAI--DMEIRGEVVLPLAS 201 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+E + G + +ANPRNAASG LR+L+ R L+ + + L + ++ K E Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKDRGLDAYFYFLVEADKLGFKSHSE 261 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++ + +G T I + + R LPY+ DGLV KVDE +L ++G Sbjct: 262 SIKFLESMGIKTTGIFELLETSKEIEKRIDYWEKERENLPYETDGLVIKVDEINLWNEIG 321 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +++PRW I++KF Q ST L + Q+GRTG LTPVA L+ V + G+ + A+LHN Sbjct: 322 YTSKTPRWAIAYKFPAHQVSTVLNGVTWQVGRTGKLTPVAELQEVELSGSKVKRASLHNI 381 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 I+ +DIR+GDRV +++A E+IP+VV I +R + + P CPI Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKSIKEDRTGNEKIIEEPVNCPI 430 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C ++ R+ K C A+ +++FVSRDA NI GLG + ++ F Sbjct: 431 CNHKLEREEGLVDIK-------CVNEECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFID 483 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ DI+ L+ ++ +ENI G S+ NL +SI + +N ++ I++ Sbjct: 484 ----LGYIKTVVDIYDLKNHRE----ALENIDKMGKKSIENLLNSIEESKNRDYDKVIYA 535 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +G ++ LAK + + L + +G+I A I+ F+ Sbjct: 536 LGIAEIGKVTSKILAKASKNIDKLM----------TMTFEELTSIDGIGEIAANEIIAFF 585 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + +N ++ L ++ + + N++ K +FTGTL+ R + +E + + Sbjct: 586 KKEKNQKIIQGLKEKGLKFEIKESETNTQNINPNFAGKNFLFTGTLKHFTREQIKEEIEK 645 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722 LG + +S+ D +IVG+ GSKL+KAQ++ +KI+ EE+F+ L +++ Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696 >gi|257463090|ref|ZP_05627491.1| NAD-dependent DNA ligase [Fusobacterium sp. D12] gi|317060689|ref|ZP_07925174.1| DNA ligase [Fusobacterium sp. D12] gi|313686365|gb|EFS23200.1| DNA ligase [Fusobacterium sp. D12] Length = 673 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 219/701 (31%), Positives = 351/701 (50%), Gaps = 48/701 (6%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L++++ + D YY ++ +I D EYD L + + + + D +G + Sbjct: 14 LQKKLRSYSDAYYSQNESLISDYEYDMLLKELETLEAE----LQIADETSITQTVGSSLK 69 Query: 84 L-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 K H P LSL + I ++ FI R + ++ + E K+DG I++ Sbjct: 70 NTKFKKTAHRTPMLSLSNTYQIGEVEDFILRAKKNLNITENLEMEM--EIKLDGLSISVI 127 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 YE+GK A RGDG GEDV+ + I TIP+ LS + IE+RGE+ + +F LN Sbjct: 128 YEQGKLQRAVTRGDGVIGEDVTENVLQIETIPQELSEKL--DIEIRGEIVLPFTEFETLN 185 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 IA G + +ANPRNAASG LR+L+P R+L + + + + Q E + + Sbjct: 186 QMRIAKGEEVFANPRNAASGTLRQLDPQIVKERHLAAYFYFIVNAEQYGIHSQKESISFL 245 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 L P + + + R LPY+ DGLV K++ + ++LG +S Sbjct: 246 EKLSLPTTKICEVFQNIRELEARISHWSVERENLPYETDGLVLKINHIAFWEKLGSTGKS 305 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW +++KF KQ +T+LLDI Q+GRTG +TPVA LE V + G+ + A+LHN D I Sbjct: 306 PRWAVAYKFPAKQVTTKLLDITWQVGRTGKITPVAELEEVELSGSRVKRASLHNYDEI-- 363 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +DIR+GD V +++A E+IP+V+ + +R + + P CPIC S + Sbjct: 364 ---------LRKDIRIGDTVFIEKAAEIIPQVIKAVKQDRTGEEKEIKAPEHCPICHSLL 414 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 ++ K G C + +++FVSRD NI GLG + L+ F + Sbjct: 415 EKEEGLVDLK-------CGNKHCPGKIQGEMEYFVSRDGMNISGLGGKILEKFLE----L 463 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 + DI+ L+ +++ ++E + G S+ NL SI + +N S E+ +++LGI Sbjct: 464 HYLEDVGDIYYLKEKKE----ELEQVEKMGKKSIENLLTSIEESKNASYEKVLYALGIPF 519 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 VG A+ LAK + L + +GD +A++IVEF+QN R Sbjct: 520 VGKVAAKLLAKESKNINQLQSMTE----------EDLKEIEGIGDKMARSIVEFFQNERK 569 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680 +E L K + +++ ++ K + TGTL R + QE + +LG + Sbjct: 570 KELIEKLRKVGLRFEETDKDTTAAKFLQGKTFLVTGTLSHYTRAELQEEIEKLGGSNLSS 629 Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQ 720 +S+K D +IVG+ GSKLEKA+ LG V I+ EE+FL ++ Sbjct: 630 VSKKLDYLIVGEKAGSKLEKAKALGTVTILKEEEFLSFKEK 670 >gi|257452731|ref|ZP_05618030.1| NAD-dependent DNA ligase [Fusobacterium sp. 3_1_5R] gi|317059272|ref|ZP_07923757.1| NAD-dependent DNA ligase [Fusobacterium sp. 3_1_5R] gi|313684948|gb|EFS21783.1| NAD-dependent DNA ligase [Fusobacterium sp. 3_1_5R] Length = 676 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 222/715 (31%), Positives = 357/715 (49%), Gaps = 50/715 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S ++ L++++ + D YY ++ +I D EYD L + + + + E+ Sbjct: 2 ISKKEKENRREELQKKLQRYSDAYYSQNESLISDYEYDMLLKELEQLEKE----LQIENK 57 Query: 72 NGPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + K+G + K TH P LSL + I ++ F+ R + D+ + Sbjct: 58 SSITQKVGSSLKNTKFQKTTHKTPMLSLSNTYEIGEIEDFLLRAKKNLNMTDNLEVEM-- 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K+DG I+I YEKGK V A RGDG GEDV+ + I +IP LS IE+RGE Sbjct: 116 EIKLDGLSISIIYEKGKLVRAVTRGDGIVGEDVTENVLQIESIPHELSEAF--DIEIRGE 173 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEI 249 + + ++F LN I G + +ANPRNAASG LR+L+P R+L + + + + Sbjct: 174 IVLPFSEFENLNKIRIEKGEEVFANPRNAASGTLRQLDPKIVKERHLAAYFYFIVNAEQY 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q E + + L P + N S R LPY+ DGLV K+++ Sbjct: 234 GIHSQKESILFLEKLSLPTTKICEIFQDSSKLEDRINYWSSEREKLPYETDGLVLKINDI 293 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SL ++LG +SPRW +++KF KQ +T+LLDI Q+GRTG +TPVA LE V + G+ + Sbjct: 294 SLWEKLGSTGKSPRWAVAYKFPAKQVTTKLLDITWQVGRTGKITPVAELEEVELSGSRVK 353 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN D I +DIR+GD V +++A E+IP+VV + +R + Sbjct: 354 RASLHNYDEIVR-----------KDIRIGDTVFIEKAAEIIPQVVKAVKEDRTGKEKKIE 402 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CPIC+S + R+ K C + +++FVSRD NI GLG + Sbjct: 403 APEHCPICESILEREEGLVDLK-------CINKHCPGKIQGEMEYFVSRDGMNISGLGGR 455 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ + +DI++L+ +++ ++E + G S+ NL SI + + S Sbjct: 456 ILEKLLS----LHYLENVSDIYSLKEKRE----ELEQLDKMGKKSIENLLSSIEESKKTS 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 ++ +++LGI VG A+ LAK + L ++ VG+ +A Sbjct: 508 YDKVLYALGIPFVGKVAAKLLAKESKNILKLQTMTE----------EELQQIEGVGEKMA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++IV+F+QN ++ L+ + G + + K + TGTL K R + Sbjct: 558 RSIVDFFQNETKKQLIQNLIDIGLCFTLKDGVEASTEAKIWQGKNFLVTGTLSKYTRAEL 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQ 720 QE + + G + +++K D +IVG+ GSKLEKA+ LG V I+ EE+FL L ++ Sbjct: 618 QEDIEKSGGTNLSSVTKKLDYLIVGEKAGSKLEKAKALGSVTILTEEEFLALKEK 672 >gi|261414540|ref|YP_003248223.1| DNA ligase, NAD-dependent [Fibrobacter succinogenes subsp. succinogenes S85] gi|261370996|gb|ACX73741.1| DNA ligase, NAD-dependent [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326001|gb|ADL25202.1| DNA ligase (NAD+) [Fibrobacter succinogenes subsp. succinogenes S85] Length = 715 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 202/734 (27%), Positives = 346/734 (47%), Gaps = 61/734 (8%) Query: 12 LSIEQA--RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 +S ++ R L++++ YY+ + D ++D + +A+ +P+L Sbjct: 1 MSEQKDIDRTRYFELKKQLEEASRLYYKDGVSPMSDQDFDFGLKEMEALEAKYPELRGKG 60 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIF 127 K+G ++ KV H++P LS+ +++ E++R+F+ +S Sbjct: 61 ---SLTQKVGSDLTNDFAKVAHAVPMLSIANVYSEEEMREFVKAAEEGLSSFVSRLSSKK 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS--------- 178 + E KIDG +++ YE G+ AA RGDG G+DV+ I IP Sbjct: 118 WICERKIDGVSLSVIYENGRLKQAATRGDGAQGDDVTLNALTIADIPEYFDAKKLKIDPS 177 Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLN- 237 EVRGEVY+ + F LN++ I +K + N RN SG L+ + + Sbjct: 178 EIPQGTFEVRGEVYMEREAFERLNEQFILENKKTFQNCRNTVSGSLKLKSVAECKTRPMR 237 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 FF + + +++ E L++++ LGF N A+T I++ ++ + R +LP+ Sbjct: 238 FFAYHIPQSNNKT---HEENLKQLKRLGF-HTNDYWTADTVDEIMAISEKIGASRDSLPF 293 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+V K+++ Q++LG ++SPRW I++KF ++A T LL ++ Q+GRTG +TPVA Sbjct: 294 DIDGMVVKLNDLQQQRELGSTSKSPRWAIAYKFKAERAYTPLLSVEFQVGRTGAVTPVAN 353 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 L PV + G + ATLHN D + L D+ GD V V++ GE+IPK+ D+ Sbjct: 354 LAPVRLAGTTVKRATLHNFDEVARL-----------DLHYGDTVGVEKGGEIIPKITDVK 402 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 R A P P CP+C ++ + L C AQ +HFVS Sbjct: 403 RELRPAGASPVVAPEKCPVCGEQLTHIDGEVILR-------CENLHCKAQVQCLFEHFVS 455 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R+A NIE LG + + I+ D++ L E+ S N Sbjct: 456 REAMNIENLGPALIASLLAT----GKIKRIPDLYRLTLEDL------ESQERMAKKSAKN 505 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 ++D+I + SLE + LGIR VG AR++AK++ + + Sbjct: 506 VFDAIQASKQRSLENLLHGLGIRFVGRTSARNIAKHFRTLEKIRTAT----------VEE 555 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657 L V VG+ I +++ EF+ P ++ L+ P+ + + + V TGT Sbjct: 556 LQNVTDVGERIGKSVYEFFHTPLYTNEIDELVALGLPTEFKGVVKT--LFQGQTAVITGT 613 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L + R +A++ + + G VS +S+KT ++ G+ GSKL KA +LG+ + +E + Sbjct: 614 LPNMDRDEARKLIEENGGKVSGSVSKKTSWVLAGEAAGSKLTKANELGIPVHDEAWLMAQ 673 Query: 718 LQQYNTTLRIHDDD 731 + + + D++ Sbjct: 674 IANADESGDAPDEN 687 >gi|313673736|ref|YP_004051847.1| DNA ligase, nad-dependent [Calditerrivibrio nitroreducens DSM 19672] gi|312940492|gb|ADR19684.1| DNA ligase, NAD-dependent [Calditerrivibrio nitroreducens DSM 19672] Length = 655 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 216/694 (31%), Positives = 372/694 (53%), Gaps = 57/694 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L +E+++H YY + P I D++YD L ++ I P+ P+ P + Sbjct: 5 KTDYDRLVKELNHHCIRYYLLNDPAISDAKYDNLYKQLRKIEEEHPEWI---SPDSPTQR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++ + H SL+ I++ +L F +++Y+ I + +EPKIDG Sbjct: 62 VGFKVTSG-KTIKHLYKMFSLDNIYSEGELNDFFSKVYKVVGS----DIDYVVEPKIDGA 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 ++I YE G YAA RGDG GED++ I+ I +P +S I +RGEVY+SK Sbjct: 117 AVSIVYEDGVLSYAASRGDGVEGEDITHNIKTIRELPVSISE--KNRIVLRGEVYLSKEQ 174 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N E G +ANPRNAA+G L+ L+P R L+ F++ + + ++ Sbjct: 175 FNKINRERKNAGESLFANPRNAAAGTLKILDPAITARRGLSIFIYSIEEGRRYD--NHFD 232 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ ++ +GFP+N + + I Y ++++S+R LPYDIDG V KV+++ ++ LG Sbjct: 233 DLKWLKSIGFPINEHI-FVGKYKDIKGYIDKIESLRKNLPYDIDGAVVKVNKYEVRSILG 291 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 E + P+W I++K+ +Q +T L D+ Q+GRTGI+TPVA L+ VNI G+ ++ A+LHNE Sbjct: 292 ETIKYPKWAIAYKYEAEQVTTILKDVIFQVGRTGIVTPVAVLDTVNISGSNVSRASLHNE 351 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D IK L +++GD V V+++GE+IPKV+ ++ R + FPS CP Sbjct: 352 DEIKRL-----------GVKIGDTVFVEKSGEIIPKVIKVVPEFRTGGEKEIIFPSNCPS 400 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C ++ K+ A +C L C + + H+ SRDA +I GLG++ ++ F+ Sbjct: 401 CGDKLF--------KIDAYWKCLN-LDCPDRVKGSITHYASRDAMDIRGLGEKNVERFYD 451 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 +R DI+ L+ + + GFG++S NL SI + + R I++ Sbjct: 452 ----LGLLRSIPDIYRLEYDDLVN------LEGFGELSADNLLKSIEESKRREFYRLIYA 501 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI VG ++A++LA ++ S + L+ + +GD + ++I EF+ Sbjct: 502 LGIDGVGIKMAQTLALHFKSIDSIMAA----------SIDDLMDIYGIGDEVGRSIFEFF 551 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + RNI ++ L + + ++ + ++ + TGTL K R ++ + + G Sbjct: 552 RERRNIEMLQFLRRVGVNMV--QKEVMGDKLSGVTFLITGTLSK-PRKFYEDIIIKNGGK 608 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 + + +S+ + +IVG+NPGSKLEKA+ LGV+++ Sbjct: 609 ILSGVSKNLNFLIVGENPGSKLEKAKSLGVEVIT 642 >gi|296110658|ref|YP_003621039.1| NAD-dependent DNA ligase [Leuconostoc kimchii IMSNU 11154] gi|295832189|gb|ADG40070.1| NAD-dependent DNA ligase [Leuconostoc kimchii IMSNU 11154] Length = 681 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 234/728 (32%), Positives = 386/728 (53%), Gaps = 53/728 (7%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 + PIE L+ A++E+++ ++ + + YY+ P++ D YDAL R + AFP Sbjct: 3 PEFTPIEQLTTPMAQQEIANHQETLLQYGVAYYEQDAPLVEDYVYDALYARLVELEAAFP 62 Query: 64 DLARSEDPNGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 +P+ P K+GG + L KV H P LSL ++++E+L ++ R + + Sbjct: 63 QFI---NPDSPTQKVGGAITKSGLEKVVHPAPMLSLGDVFSLEELEEWDARTTKTLGFQS 119 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 + LE KIDG + + Y GK + A+ RG+G GEDV+A ++ I IP++L+ + Sbjct: 120 ----AYNLELKIDGLAVALTYVDGKLIQASTRGNGMIGEDVTANVKMIKVIPQILNEPL- 174 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVH 241 IEVRGE+Y+SK+ F LN++ G P+ANPRNAA+G LR+LN + R L+ FV+ Sbjct: 175 -TIEVRGEIYMSKSSFATLNNQRETEGLAPFANPRNAAAGSLRQLNTSIMKQRQLSAFVY 233 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 + + Q + L++ LG P ++ I Y ++ + R L Y IDG Sbjct: 234 YTAEPDILGVTTQSQALERFHELGLPTDHHNHVILKMPDIADYISKYSADRDKLSYGIDG 293 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V KV+E Q LG + PRW I++KF ++A T L DI+ +GRTG +TP A ++PV Sbjct: 294 VVVKVNELDDQTDLGNTVKIPRWAIAYKFPPEEALTILRDIEWTVGRTGAVTPTAVMDPV 353 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G + A+LHN DY+ + +R+GD V + +AG++IP++ +I+++R Sbjct: 354 QLAGTTVQRASLHNPDYL-----------NDKGVRLGDTVTLHKAGDIIPEIGQVILSKR 402 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 ++QP++ P CP C+S++V A RC ACSAQ E L HF SR+A Sbjct: 403 PVNSQPYNIPLLCPACESKLVHLEGE------VALRCINP-ACSAQIQEGLAHFASRNAM 455 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 NIEG+G + + + A I A I+ L Q + + F + SV+NL ++ Sbjct: 456 NIEGMGPRVIAQLLQ----AGFIEDVASIYRLNATQLHA------LDKFKEKSVSNLLNA 505 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I + ++ SLE+ +F LGIR VGA+ AR +A+ + + A+ + + Sbjct: 506 IERSKDNSLEKLLFGLGIRMVGAKAARLIAEKFKTLSVIARAT----------VSEIANI 555 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQ 659 +G+ IA+++V+++ P + ++ L + + SS KK+V TG L Sbjct: 556 DGIGETIARSLVQYFNMPESQQLLKELTAAGVNQSYLSEVVIDESSFFYGKKIVLTGKLS 615 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R +++ GA VS+ +S KTD++I G + GSKL KA +LG+ + E Q + Sbjct: 616 ESNRSAVSKWLQNHGASVSSAVSSKTDLLIAGTDAGSKLAKANELGIAVWTESQLIA--A 673 Query: 720 QYNTTLRI 727 Q ++ Sbjct: 674 QKEEDIKK 681 >gi|254796855|ref|YP_003081692.1| DNA ligase, NAD-dependent [Neorickettsia risticii str. Illinois] gi|254590064|gb|ACT69426.1| DNA ligase, NAD-dependent [Neorickettsia risticii str. Illinois] Length = 670 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 250/702 (35%), Positives = 388/702 (55%), Gaps = 49/702 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A+KE+ L +++ H+ YYQ P I D+EYD++K R + A P L Sbjct: 2 KAKKEIQELYEKLLRHNKKYYQDDSPEITDAEYDSIKGRYLKLLEANPSLGFPVV----- 56 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 IG + KV H P LSL I++ E+L ++I R RF K N + F EPKID Sbjct: 57 --IGYPASEKFQKVKHLSPMLSLRNIFSEEELVEYIERTKRFLNLK--NELEFLCEPKID 112 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + RY GK + A RGDG GE++ ++ I P + P+++EVRGEV++ Sbjct: 113 GVSFSARYINGKLLSCATRGDGKIGENIIDNMKVINGFPIEIVDV-PDLLEVRGEVFLDH 171 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 + F L ++NPRNAA+G LR+LNP +IT+ N + + Q Sbjct: 172 DTFQTLE---------GFSNPRNAAAGSLRQLNP-EITKERNLQYFAYSISKIDGIEHQE 221 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 ++L + GF N ++ I+S+Y+ + RS + YDIDGLVYKV+ L +L Sbjct: 222 DVLHFLSERGFMTNPLRLASSKVPEIMSFYDSVYRGRSQIKYDIDGLVYKVNNLKLHARL 281 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G + +PRW I+HKF + T L I + +GRTGI+TPVA L+P+ IGG +I+ A+L+N Sbjct: 282 GTLSDAPRWAIAHKFPSHRGKTILEKIKLSVGRTGIITPVAHLKPITIGGVVISRASLYN 341 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 ED + +DIR GD V V+RAG+VIPKV+++ ++ R + + F FP CP Sbjct: 342 EDELAR-----------KDIREGDLVTVERAGDVIPKVLEVDISYRT-NQERFIFPDKCP 389 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S ++R N AA RC C+ Q ++++KH VS AF+I+G+G + FF Sbjct: 390 SCSSTLIRKNNE------AAIRCNNRKKCTEQVIQQIKHLVSAQAFDIDGIGTSHISFFI 443 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + E I PADIF L + + +I+ G+G+ SV N+ SI K R ISLE+FIF Sbjct: 444 EKE----FISEPADIFCLDKHRD----EIKKYDGWGEKSVDNILTSIEKSRKISLEKFIF 495 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 SLGI++VG + A LA+ + S+ N+ ++ +I+ + + + +G + +++++F Sbjct: 496 SLGIKNVGEKTAYMLAQQFKSFANWFDKM-SILKDDTQTENEIRNLDGMGSCVCESLLDF 554 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + +P N V++L V I H ++ + KK VFTGTL I R +A+E V + G Sbjct: 555 FSDPDNCNMVKSLSNHV--MITDHAISIGGPLSGKKFVFTGTLLSITREEAKEIVKKAGG 612 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +V +S++ D ++ G+ GSKL KA +LG+ I+ E+ + Sbjct: 613 IVLNSVSKQVDYVVAGEKAGSKLVKANELGIAIIEEKTLIEF 654 >gi|229828351|ref|ZP_04454420.1| hypothetical protein GCWU000342_00409 [Shuttleworthia satelles DSM 14600] gi|229792945|gb|EEP29059.1| hypothetical protein GCWU000342_00409 [Shuttleworthia satelles DSM 14600] Length = 675 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 194/719 (26%), Positives = 333/719 (46%), Gaps = 61/719 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E L +I+YH D YY K I D EYD L ++ A PD R P Sbjct: 1 MTFET----YQELIDQINYHMDLYYNQDKTEISDYEYDQLMQQLKAAEAEHPDWVR---P 53 Query: 72 NGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P KIGG + KV H++P LS+E +++ + + ++ ++ F++ Sbjct: 54 DSPSQKIGGTTKREAGVKVEHNVPMLSIEDVFDFQSVIDWVKKVQEM-----HPDAIFSV 108 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +T+RY KG+ A RGDGH GEDV+ RAIP +P L + P + E+RGE Sbjct: 109 EQKIDGLSMTLRYRKGRLELAETRGDGHIGEDVTQNARAIPQVPDKLPITDPYL-ELRGE 167 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249 VY++++ F A N + ANPRN A+G LR+L+P R L F+ + Sbjct: 168 VYMTRDRFEAYNARQEKDEKPLAANPRNLAAGTLRQLDPGITAKRGLALFIFNVQDGEPH 227 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 F + Q + L ++ +G PV ++A+ +++ E+ +R L YDIDG V K+D+ Sbjct: 228 FMRSQLDNLDRLSAMGLPVTYH-KRADNAKEVIAAIEEIGKMRDQLGYDIDGAVVKIDQI 286 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE------PVNI 363 + +K A+ I++K+ ++ + I + +GRTG LT + P + Sbjct: 287 AYRKDFPAGAKYSAGHIAYKYPPEERVVEMDQILVDVGRTGKLTFTGQFHDVKTGGPARL 346 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G ++ ATLHN+DYI+ + I +G + ++GE+IPK+ + + Sbjct: 347 CGTSVSRATLHNQDYIRQM-----------KIGIGGHYKLFKSGEIIPKLNGCVKEPKA- 394 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 F P FCP+C + ++ A RC +C AQ + +F R +I Sbjct: 395 ---VFKAPQFCPVCGEELEQEEG------TADIRCVNP-SCPAQISRTIAYFAGRSCMDI 444 Query: 484 EGLGKQQLDFFFKSEDPA---FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 GLG+ +D + + F + DI+ L+ + + ++ + + + Sbjct: 445 AGLGQTLVDALCQEKITGSETFYLTSYVDIYRLREHRDSLISRGIL---GKEKNTDKILA 501 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 +I ++ R + LGIR+VG A +L Y + + L Sbjct: 502 AIEDSKSQRPTRLLAGLGIRNVGLSTAAALMAVYPDLMDLMHA----------GFEDLQG 551 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 +P +G+ A IV F+ + + E+ + +V TG L Sbjct: 552 IPDIGEKTAADIVHFFAHEDKRRMMADFRALGLTMRMPEEEKTE-ALAGLTIVVTGKLPG 610 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++R +A+ + + G + +S KTD ++ G+ GSKL+KA+ LG+ +++EE L++ Sbjct: 611 MERSEAKALIEKNGGKCTGSVSGKTDYLLAGEAAGSKLDKAKSLGIPVIDEEGLKALIE 669 >gi|212550985|ref|YP_002309302.1| NAD-dependent DNA ligase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|254781545|sp|B6YRR9|DNLJ_AZOPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|212549223|dbj|BAG83891.1| NAD-dependent DNA ligase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 663 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 206/706 (29%), Positives = 345/706 (48%), Gaps = 48/706 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++++ +L QEI + YY +PI+ D E+D + + + +P+ D P Sbjct: 3 IKQKIDNLRQEIDNWNYRYYVIYQPIVSDFEFDKKLKELEKLEAQYPEY---YDYYSPTQ 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +IG ++N + ++ H P LSL ++ E + F RI + + + E K DG Sbjct: 60 RIGNDINNNFAQINHIYPMLSLSNTYSWEGINDFYNRIKKIL----NENFVIACELKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII-EVRGEVYISK 195 I++ YE G + A RGDG +G+DV+ IR + +IP L N E+RGE+ Sbjct: 116 VSISLIYESGLLLRAVTRGDGTTGDDVTTNIRTVKSIPLKLYGNNYPRFFEIRGEIVFPW 175 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 F +N E I P+ANPRNAA+G L+ LNP +++ + + Y Sbjct: 176 AAFNKINKERIENSEPPFANPRNAAAGTLKTLNPQVVSQRNLDAYLYQLLGDNLSSDSHY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ + GF V+N ++ T I ++ N + +LP+ +DG+V KVD Q L Sbjct: 236 ENLQLAQGWGFKVSNIIKCCKTIDEIENFINYWGKWKKSLPFAVDGVVLKVDSIRQQSLL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF + T L +D Q+GRTGI+TP+A LEPV + G ++ A+LHN Sbjct: 296 GRIAKSPRWAIAYKFQSETVKTTLHSVDFQVGRTGIITPIANLEPVLLSGTIVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434 ED I L D+ +GD+ V++ GE+IPK+ I R + +FP C Sbjct: 356 EDIINAL-----------DLHIGDQCYVEKGGEIIPKITGINKEARLTFGNKAVNFPKNC 404 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + ++R N A+ C C Q + HF SR A NI + Sbjct: 405 PACNTPLIRFQNET------AYYCPNYTQCKPQIKGMITHFASRKAMNINVGEET----- 453 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 ++ A +R AD++ ++ + + + S N +S+ + + + ER + Sbjct: 454 IETFYRAGLVRDIADLYEIKIDDI------LQLKRWAEKSAINFVESVQQSKQVPYERVL 507 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + LGI VG +A+ LAK + + + + + L + +G+ IAQ++++ Sbjct: 508 YGLGIHFVGEVVAKRLAKAFPTIEQL----------SIANNEQLTTIDGIGNQIAQSVIQ 557 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 ++ N N+ + L + + +++ K + +G +K R K +E + G Sbjct: 558 YFSNENNLQLIRRLKLYGLQLFTIQKIFIDNKLAGKTFIISGIFRKYSRDKYKELIENNG 617 Query: 675 AVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQ 719 + LS KTD I+ G N G KL KAQ+ G+KI++E++FL +++ Sbjct: 618 GKNVSSLSAKTDFILSGVNMGPVKLIKAQRFGIKIISEDEFLKMIE 663 >gi|315187042|gb|EFU20799.1| DNA ligase, NAD-dependent [Spirochaeta thermophila DSM 6578] Length = 697 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 221/727 (30%), Positives = 348/727 (47%), Gaps = 59/727 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ ++A++E+ L + + D YY +P + D EYD+L R + FP L R P Sbjct: 1 MTEQEAKREIDRLVELLQRADYEYYVLGRPHLTDQEYDSLFERLKTLETRFPHLRR---P 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P+ ++G ++ + +V H+IP LSL+K + ++ +I + R K + F +E Sbjct: 58 DSPIQRVGSDLTVDFPEVAHTIPVLSLDKAYTETEVLSWIEKTERAAGK----PLGFVIE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG + + Y G A RG+G G D++ R I IP + + VRGEV Sbjct: 114 EKIDGVSLVLYYRGGILDRAVTRGNGRVGNDITPNARTIRQIPLRIPE--NGEVVVRGEV 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 Y+ F +N M PYANPRN A G+LRR N ++ R F+ G A Sbjct: 172 YLPLQYFDEINARM----EVPYANPRNLAGGVLRRKNSAEVARVPLHFLAYDGYLPFPVA 227 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQAN-----TFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 E L + GFPVN + I ++ +S R+TL Y IDGLV+KV Sbjct: 228 TY-TESLDYLIDWGFPVNPRHERLPAGTPDREARIRTFIERERSGRATLDYQIDGLVFKV 286 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 +E ++++LG PRW I++KF QA T LL ID+Q+GRTG +TPVARL+PV + G+ Sbjct: 287 NELDVRERLGYTGHHPRWAIAYKFEAPQAVTELLRIDVQVGRTGRVTPVARLKPVELSGS 346 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 I+N TLHNEDY++ L+ + GD V + + G+VIP + ++ Sbjct: 347 TISNVTLHNEDYVQALE-----------LAPGDLVAISKRGDVIPAIEKVVEKN-EEGVP 394 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + P CP C S + + AH C A RLK FVS +I L Sbjct: 395 VWRMPEHCPECGSPL---------ERRGAHHFCPNRNCPAVITGRLKFFVSPKQMDIRVL 445 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +DF + IR D++T K+ + GFG+ ++ + I + + Sbjct: 446 GNETIDFLVEK----GYIRRIPDLYTFDYW------KLLDEPGFGEKKISQIVQGIEESK 495 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + +LGI VG + +L + S + D +L R+ +G Sbjct: 496 KRPFSTVLVALGIPEVGPSVVETLIRGGITSIDRLF------TIADRGDVEALTRLEGIG 549 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQ-R 663 + A+ ++E ++P +E L K VS E + TG+ + R Sbjct: 550 EKTARQLMETLRDPEWRKEIEELRKAGLSFEEERPTVVSGGPFEGQAWCVTGSFRHFTPR 609 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 KA+E + LG V + +S KT ++VG+NPGSKLEKA+ LGV++++E+QF+ +L+ Sbjct: 610 SKAEELIASLGGKVVSSVSSKTTHLLVGENPGSKLEKARSLGVRLVSEDQFIEMLKAAGV 669 Query: 724 TLRIHDD 730 + Sbjct: 670 DPFNEKE 676 >gi|157737313|ref|YP_001489996.1| NAD-dependent DNA ligase LigA [Arcobacter butzleri RM4018] gi|166215390|sp|A8ETQ3|DNLJ_ARCB4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157699167|gb|ABV67327.1| DNA ligase [Arcobacter butzleri RM4018] Length = 648 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 216/707 (30%), Positives = 357/707 (50%), Gaps = 61/707 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E+ + L + YY + PI D EYD L R C A P L+ P Sbjct: 1 MTKEEYDLNIEKLIS----WANAYYVFDNPIATDEEYDKLARLCLAYEQENPKLSH---P 53 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++GG + K +H S E ++N ++L +I R + + ++ F + Sbjct: 54 NSPNKRVGGIVLDGFIKASHLSRMWSQEDVFNTQELEDWIKRASKV-----NTNLEFFCQ 108 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK DG + + YE G A RGDG GEDV+ + I +IP + +IE+RGEV Sbjct: 109 PKFDGASLNLIYENGILKQAITRGDGTVGEDVTNNAKTIFSIPLEIEE--KSLIEIRGEV 166 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 I K DF +N E G + +ANPRNAA+G LR+L+ R L F V G+G+ + + Sbjct: 167 VIKKADFEKINIERAKNGEQLFANPRNAAAGSLRQLDSNITAKRKLFFNVWGIGQ-NSLE 225 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K ++++ + LGF A+ I S Y++ SIR+ +DG+V K+D+ Sbjct: 226 HKKYSQIMEYIYSLGFERPQMQTLASNIEEIESLYHKFISIRNDFEMMLDGMVIKIDDIE 285 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG + PRW ++KF + +T+L I +Q+GRTGI+TPVA +EP I G+ ++ Sbjct: 286 TQEELGYTVKFPRWSCAYKFPAVEKTTKLKAITLQVGRTGIITPVAEVEPTLIDGSTVSR 345 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L D+++ D V++ ++G++IPK+ + R D S Sbjct: 346 ATLHNFDEIERL-----------DLKINDEVIIIKSGDIIPKITKVFFERRKGDEITISR 394 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S V+ + L C ++ + + +F S++ NI+GLG + Sbjct: 395 PTSCPTCNSEVLDEG---------TMIKCQNLDCPSRVVNSIIYFASKNCMNIDGLGNKI 445 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F + I DI++L+ + GF + + NL ++I + L Sbjct: 446 VEQLFNEKK----IYDILDIYSLKYEDLQD------LEGFKEKKINNLLNAIENTKGSEL 495 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R I +LGI H+G ++ + + + N D+ SLI + G+ +A Sbjct: 496 HRVINALGIEHIGEVASKQICLEFG------------LDVINKDYDSLIALDGFGEQMAN 543 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 + +EF + N VE L+ ++P + ++ + +NK +V TGT+ K R + + + Sbjct: 544 SFIEFMRV--NKNLVEKLISIINPKVEIKKEVSENPFKNKTVVITGTMSK-SRGEIKSML 600 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 LGA VS+ +S+KTD +I G++ GSK +KA +LGVK++ EE+ L Sbjct: 601 EDLGAKVSSSVSKKTDYVIFGEDAGSKYDKAIELGVKLLTEEEMNSL 647 >gi|195867759|ref|ZP_03079760.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|195660614|gb|EDX53870.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 9 str. ATCC 33175] Length = 673 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 216/712 (30%), Positives = 369/712 (51%), Gaps = 53/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ + +++ L+Q++ + YY P + D YD + R + +A+P + N Sbjct: 1 MDRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQVMRELIELENAYPQFKTN---NS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG ++ KV H P LSL ++ DLRKF + +EPK Sbjct: 58 PSVRVGGFVSEKFNKVKHKRPMLSLSNAFDANDLRKFDQDNQNASVDLKG----YVVEPK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192 IDG I+I Y+ K A RGDG +GEDV++ I I IP + + IEVRGEVY Sbjct: 114 IDGLSISIIYKNAKLHQAITRGDGVNGEDVTSNILTIKDIPHYIDQKYKDYEIEVRGEVY 173 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251 ++ +DF +ND + + +ANPRNAA+G LR L+ + R L+ F++ L E+ Sbjct: 174 MAFHDFYEMNDNLEESDK-KFANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQELGI 232 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 K YE +Q ++ F V++ + + +T +++ + +R+ L Y IDG+V K++ + Sbjct: 233 KTHYESIQFLKDNKFKVSDLIVKVDTIDEVINQIDRYTKVRNDLSYMIDGIVIKINNLEV 292 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 ++G ++ P+W I++KF S++LL+I +GRTG ++ VA+++P+ + G+++ A Sbjct: 293 YDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSIVEYA 352 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D+IK +DIR+ D + + +AG+VIP V + +++R ++ P+ Sbjct: 353 TLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPYESI 401 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP CQS +VR+ + RC C +E++ +FVSR+ NIEG+ + Sbjct: 402 TNCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSDAII 455 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F+ A I+ AD++ LQ+ ++ I D S +NL +SIN + SLE Sbjct: 456 NKFYD----ANLIKNVADLYYLQKHKEFILASDFKI---KDKSFSNLINSINNSKTRSLE 508 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + GIRHVG +A+ LAK + + ++ L V G+ A + Sbjct: 509 FLLTAFGIRHVGPNLAKKLAKQFKTMTTLMHA----------NFDELTNVDACGEKAALS 558 Query: 612 IVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++ ++ + NIC + L + I N+ E +NK V TG+ I R + Sbjct: 559 LINWFNDDHNICLINQLEQVGVNMEYIDDFIYDENINIVDEYKNKTFVITGSFS-ISRDE 617 Query: 666 AQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + + + A V +S+KTD ++ G G+KLEKA+ LGVKI+ E +F Sbjct: 618 IKTILEKYYDAKVKNSVSKKTDYVLAGAEAGTKLEKAKSLGVKII-ENEFWK 668 >gi|188524111|ref|ZP_03004188.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273308|ref|ZP_03205844.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|195659974|gb|EDX53354.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249828|gb|EDY74608.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 4 str. ATCC 27816] Length = 673 Score = 459 bits (1180), Expect = e-126, Method: Composition-based stats. Identities = 216/712 (30%), Positives = 368/712 (51%), Gaps = 53/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ + +++ L+Q++ + YY P + D YD R + +A+P + N Sbjct: 1 MDRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQAMRELIELENAYPQFKTN---NS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG ++ KV H P LSL ++ DLRKF + +EPK Sbjct: 58 PSVRVGGFVSEKFNKVKHKRPMLSLSNAFDANDLRKFDQDNQNASVDLKG----YVVEPK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192 IDG I+I Y+ K A RGDG +GEDV++ I I IP + + IEVRGEVY Sbjct: 114 IDGLSISIIYKNAKLHQAITRGDGVNGEDVTSNILTIKDIPHYIDQKYKDYEIEVRGEVY 173 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251 ++ +DF +ND + + +ANPRNAA+G LR L+ + R L+ F++ L E+ Sbjct: 174 MAFHDFYEMNDNLEESDK-KFANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQELGI 232 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 K YE +Q ++ F V++ + + +T +++ + +R+ L Y IDG+V K++ + Sbjct: 233 KTHYESIQFLKDNKFKVSDLIVKVDTIDEVINQIDRYTKVRNDLSYMIDGIVIKINNLEV 292 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 ++G ++ P+W I++KF S++LL+I +GRTG ++ VA+++P+ + G+++ A Sbjct: 293 YDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSIVEYA 352 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D+IK +DIR+ D + + +AG+VIP V + +++R ++ P+ Sbjct: 353 TLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPYESI 401 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP CQS +VR+ + RC C +E++ +FVSR+ NIEG+ + Sbjct: 402 TNCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSDAII 455 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F+ A I+ AD++ LQ+ ++ I D S +NL +SIN + SLE Sbjct: 456 NKFYD----ANLIKNVADLYYLQKHKEFILASDFKI---KDKSFSNLINSINNSKTRSLE 508 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + GIRHVG +A+ LAK + + ++ L V G+ A + Sbjct: 509 FLLTAFGIRHVGPNLAKKLAKQFKTMTTLMHA----------NFDELTNVDACGEKAALS 558 Query: 612 IVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++ ++ + NIC + L + I N+ E +NK V TG+ I R + Sbjct: 559 LINWFNDDHNICLINQLEQVGVNMEYIDDFIYDENINIVDEYKNKTFVITGSFS-ISRDE 617 Query: 666 AQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + + + A V +S+KTD ++ G G+KLEKA+ LGVKI+ E +F Sbjct: 618 IKTILEKYYDAKVKNSVSKKTDYVLAGAEAGTKLEKAKSLGVKII-ENEFWK 668 >gi|294784746|ref|ZP_06750034.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_27] gi|294486460|gb|EFG33822.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_27] Length = 696 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 218/711 (30%), Positives = 364/711 (51%), Gaps = 50/711 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L +++ + + YY + +I D E+D L + +++ +P + P + Sbjct: 29 EKIVKLREDLDKYRNSYYNDNISLISDYEFDMLLKELESLEEKYPQYKEI---SSPTTSV 85 Query: 79 GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 G + KV H+ P LSL +NI ++ FI RI + K+ + + LE K+DG Sbjct: 86 GASLKENKFKKVEHTHPMLSLANSYNIGEIVDFIERIKKKIPKE--QELKYCLEVKLDGL 143 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y +GK V A RGDG GEDV+ I I +I + L I +E+RGEV + Sbjct: 144 SISLTYRQGKLVRAVTRGDGLIGEDVTENILEIASIIKTLPQAI--DMEIRGEVVLPLAS 201 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYE 256 F LN+E + G + +ANPRNAASG LR+L+ + L+ + + L + ++ K E Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKGRGLDAYFYFLVEADKLGLKSHSE 261 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++ + +G T I + + R LPY+ DGLV KVDE +L ++G Sbjct: 262 SIKFLESMGIKTTGIFELLETSKDIEKRIDYWEKERENLPYETDGLVIKVDEINLWNEIG 321 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +++PRW I++KF Q ST L + Q+GRTG LTPVA L+ V + G+ + A+LHN Sbjct: 322 YTSKTPRWAIAYKFPAHQVSTILNGVTWQVGRTGKLTPVAELQEVELSGSKVKRASLHNI 381 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 I+ +DIR+GDRV +++A E+IP+VV I ER + + P CP+ Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKVIEEPVCCPV 430 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C ++ R+ K C A+ +++FVSRDA NI GLG + ++ F Sbjct: 431 CNHKLEREEGLVDIK-------CINEECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFID 483 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ DIF L+ ++ +ENI G S+ NL +SI + +N ++ I+S Sbjct: 484 ----LGYIKTVVDIFDLKEHRE----ALENIDKMGKRSIENLLNSIEESKNRDYDKVIYS 535 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +G ++ LAK + + L + +G+I A I+ F+ Sbjct: 536 LGIPFIGKVASKILAKASKNIDKLM----------TMTFEELTSIEGIGEIAANEIIAFF 585 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + +N +E+L ++ + + N++ K +FTGTL+ R + +E + + Sbjct: 586 KKEKNQKIIESLKEKGLKFEIKESETNVQNINPNFAGKNFLFTGTLKHFTREQIKEEIEK 645 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722 LG + +S+ D +IVG+ GSKL+KAQ++ +KI+ EE+F+ L +++ Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696 >gi|256846124|ref|ZP_05551582.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_36A2] gi|256719683|gb|EEU33238.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_36A2] Length = 696 Score = 458 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 218/711 (30%), Positives = 364/711 (51%), Gaps = 50/711 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L +++ + + YY + +I D E+D L + +++ +P + P + Sbjct: 29 EKIVKLREDLDKYRNSYYNDNISLISDYEFDMLLKELESLEEKYPQYKEI---SSPTTSV 85 Query: 79 GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 G + KV H+ P LSL +NI ++ FI RI + K+ + + LE K+DG Sbjct: 86 GASLKENKFKKVEHTHPMLSLANSYNIGEIVDFIERIKKKIPKE--QELKYCLEVKLDGL 143 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y +GK V A RGDG GEDV+ I I +I + L I +E+RGEV + Sbjct: 144 SISLTYRQGKLVRAVTRGDGLIGEDVTENILEIASIIKTLPQAI--DMEIRGEVVLPLAS 201 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYE 256 F LN+E + G + +ANPRNAASG LR+L+ + L+ + + L + ++ K E Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKGRGLDAYFYFLVEADKLDLKSHSE 261 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++ + +G T I + + R LPY+ DGLV KVDE +L ++G Sbjct: 262 SIKFLESMGIKTTGIFELLETSKDIEKRIDYWEKERENLPYETDGLVIKVDEINLWNEIG 321 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +++PRW I++KF Q ST L + Q+GRTG LTPVA L+ V + G+ + A+LHN Sbjct: 322 YTSKTPRWAIAYKFPAHQVSTILNGVTWQVGRTGKLTPVAELQEVELSGSKVKRASLHNI 381 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 I+ +DIR+GDRV +++A E+IP+VV I ER + + P CP+ Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKVIEEPVCCPV 430 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C ++ R+ K C A+ +++FVSRDA NI GLG + ++ F Sbjct: 431 CNHKLEREEGLVDIK-------CINEECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFID 483 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ DIF L+ ++ +ENI G S+ NL +SI + +N ++ I+S Sbjct: 484 ----LGYIKTVVDIFDLKEHRE----ALENIDKMGKRSIENLLNSIEESKNRDYDKVIYS 535 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +G ++ LAK + + L + +G+I A I+ F+ Sbjct: 536 LGIPFIGKVASKILAKASKNIDKLM----------TMTFEELTSIEGIGEIAANEIIAFF 585 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + +N +E+L ++ + + N++ K +FTGTL+ R + +E + + Sbjct: 586 KKEKNQKIIESLKEKGLKFEIKESETNVQNINPNFAGKNFLFTGTLKHFTREQIKEEIEK 645 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722 LG + +S+ D +IVG+ GSKL+KAQ++ +KI+ EE+F+ L +++ Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696 >gi|85057601|ref|YP_456517.1| NAD-dependent DNA ligase [Aster yellows witches'-broom phytoplasma AYWB] gi|123725342|sp|Q2NJF5|DNLJ_AYWBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|84789706|gb|ABC65438.1| NAD-dependent DNA ligase [Aster yellows witches'-broom phytoplasma AYWB] Length = 671 Score = 458 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 228/706 (32%), Positives = 376/706 (53%), Gaps = 50/706 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++++ SL ++++ + YY S P + D +YDAL + + + +P P P Sbjct: 7 IKQKIKSLVKQLNKANYQYYNLSDPDLSDQQYDALIKELINLENHYPQFKL---PYSPTL 63 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 KIGG + + H P +SL ++NIE+L+ F RI + + E KIDG Sbjct: 64 KIGGFVEKKFSTIKHKTPMMSLANVFNIEELKAFYDRIVKKI-----PTFSLLTELKIDG 118 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I+++Y+KG V A RG+G GEDV+ + I TIP L+ ++ +EVRGE+Y+S Sbjct: 119 VAISLKYQKGILVRALTRGNGIWGEDVTKNAQTIKTIPLRLNEDL--DLEVRGEIYLSHP 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQY 255 DF LN + + ++NPRNAASG LR+LN R L+ FV+G+ Q Sbjct: 177 DFEKLNAQRKQENKPLFSNPRNAASGTLRQLNSAVVAKRNLSIFVYGIADPYLTKPT-QK 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L + LGF N + F ++S + KSI+ L YD DG+V K++E + Sbjct: 236 ETLVFLTALGFATNPHHYFVSNFENLLSVIEKYKSIKEQLTYDTDGIVIKINELVFHSLI 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A++PRW ++KFA + + + +I Q+GRTG++TPV + PV + G+L++ LHN Sbjct: 296 GATAKAPRWATAYKFATITSQSIIQNIIFQVGRTGVITPVCEIMPVMVDGSLVSKVFLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 DYI +DIR+ D V+V +AG VIP+++++I ++R +P CP Sbjct: 356 YDYI-----------CKKDIRIKDHVIVHKAGSVIPEILEVIKSKRTDLQKPTLMIEKCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C++ + + C Q++++L HFVS++A +I LG+Q + FF Sbjct: 405 SCKTILEKQPGGID-------YFCLNPNCREQKIQKLIHFVSKNAMDINVLGEQTIITFF 457 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 I P+D++ L+ Q ++ I GFG +TN+ D+I + E +F Sbjct: 458 DKN----LITKPSDLYLLKNHQHI----LQEISGFGAKKITNILDAIEASKQKGFEDVLF 509 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGI+H+G ++++ LAKY+ + +N Q + ++ ++ +G IAQ+I ++ Sbjct: 510 ALGIKHIGKKVSQVLAKYFQTIENLQQSTS----------DTITQIREIGIKIAQSIQQY 559 Query: 616 YQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + N N+ V L K S + + NKK+V TGTLQK R + Q+ + Q+ Sbjct: 560 FSNSCNLEEVTKLKKLGVSFQSTNSQKPTTQNIFTNKKIVLTGTLQKYSRLQIQQILEQM 619 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GA+++ LS KT+ +IVG N GSKL KAQ+L + I+ E++ +++ Sbjct: 620 GAIITNSLSLKTNYLIVGINAGSKLTKAQKLQIPIIEEKELQQIIE 665 >gi|19705038|ref|NP_602533.1| NAD-dependent DNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|81485410|sp|Q8RI94|DNLJ_FUSNN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|19712952|gb|AAL93832.1| NAD-dependent DNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 696 Score = 458 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 222/711 (31%), Positives = 367/711 (51%), Gaps = 50/711 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L ++++ + D YY +K +I D E+D L + +++ +P + P + Sbjct: 29 EKIVKLREDLNKYRDSYYNDNKSLISDYEFDILLKELESLEEKYPQYKEI---SSPTTSV 85 Query: 79 GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 G + KV H P LSL +NI ++ +FI RI + K+ + + LE K+DG Sbjct: 86 GASLKENKFKKVEHLHPMLSLANSYNIGEIVEFIERIKKKIPKE--QELKYCLEVKLDGL 143 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y +GK V A RGDG GEDV+ I I +I + L I +E+RGEV + Sbjct: 144 SISLTYRQGKLVRAVTRGDGFIGEDVTENILEIASIVKTLPQAI--DMEIRGEVVLPLAS 201 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+E + G + +ANPRNAASG LR+L+ R L+ + + L + ++ K E Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKDRGLDAYFYFLVEADKLGLKSHSE 261 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++ + +G T I N + R +LPY+ DGLV KVDE +L ++G Sbjct: 262 SIKFLESMGIKTTGIFELLETSKDIEKRINYWEKERESLPYETDGLVIKVDEINLWDEIG 321 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +++PRW I++KF Q ST L D+ Q+GRTG LTPVA L+ V + G+ + A+LHN Sbjct: 322 YTSKTPRWAIAYKFPAHQVSTVLNDVTWQVGRTGKLTPVAELQEVELSGSKVKRASLHNI 381 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 I+ +DIR+GDRV +++A E+IP+VV I ER + + P+ CPI Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKVIEEPTCCPI 430 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C ++ R+ K C A+ +++FVSRDA NI GLG + ++ F Sbjct: 431 CNHKLEREEGLVDIK-------CINEECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFID 483 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ DIF L+ ++ +ENI G S+ NL +SI + +N ++ +++ Sbjct: 484 ----LGYIKTVVDIFDLKNHRE----ALENIDKMGKKSIENLLNSIEESKNRDYDKILYA 535 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +G ++ LAK + + L + +G+I A I+ F+ Sbjct: 536 LGIAEIGKVTSKILAKASKNIDKLMA----------MTFEDLTSIEGIGEIAANEIIAFF 585 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 +N ++ L ++ + + NV+ K +FTGTL+ R + +E + + Sbjct: 586 TKEKNQKIIQGLKEKGLKFEIKESEASVQNVNPNFVGKNFLFTGTLKHFTREQIKEEIEK 645 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722 LG + +S+ D +IVG+ GSKL+KAQ++ +KI+ EE+F+ L +++ Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696 >gi|291277000|ref|YP_003516772.1| DNA ligase [Helicobacter mustelae 12198] gi|290964194|emb|CBG40040.1| DNA ligase [Helicobacter mustelae 12198] Length = 669 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 223/716 (31%), Positives = 364/716 (50%), Gaps = 64/716 (8%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K ++ +E +++ +++ YY PI D EYD L A Sbjct: 13 KSKKETSME-------KEQYEKKVEQLKKMAYHYYVLDDPISSDEEYDILYHEVKGYEEA 65 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 P+ R + P ++G L K TH SL+ +++ E+L + +IY+ Sbjct: 66 HPEAIRE---DSPTQRVGMPPLLEFQKNTHRKKMWSLDDVFSFEELESWCQKIYK----- 117 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 + FT PK DG + + YE G + A RGDG GE V+ + IP+IP L + Sbjct: 118 NHPEAIFTCSPKFDGASLNLLYENGDLISATTRGDGMQGELVTQNAKTIPSIP--LKIPH 175 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240 +IE+RGEV I+K+DF ALN + + G +ANPRNAA+G +R+L+ + R L F Sbjct: 176 KGLIEIRGEVVIAKSDFEALNKKRMEEGEALFANPRNAAAGSMRQLDSSITAQRKLRFIP 235 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 G G+ + E L+++ C GF V+ I YY E+ R LP +D Sbjct: 236 WGFGQ-HTLGIDSFKEALEQVFCFGFSPIPFVQLCKNMQEIQRYYEEIMQRREDLPMMLD 294 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V +D F +Q+++G +SPR+ ++KF + T++L I Q+GRTG++TPVA LEP Sbjct: 295 GMVVMLDSFLMQEKMGFTIKSPRFACAYKFPAVEKFTKILSIINQVGRTGVITPVAELEP 354 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 + I GA +T ATLHN I+ +DIR+ D V+V R+G+VIPK++ + Sbjct: 355 IEIEGARVTRATLHNYKEIQK-----------KDIRIFDEVVVIRSGDVIPKIIRPNIAR 403 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R + + P+ CPIC R++ + L C+A+ E + HFVS+ A Sbjct: 404 RTGEEKAIEPPTHCPICGERLLIEEIFIR---------CQNLQCTARVRESIVHFVSKKA 454 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 NI+GLG++ + F A ++ D+++L ++ + GF + NL + Sbjct: 455 LNIDGLGEKIIYQLF----AAGLVKNITDLYSLDYE------ELLRLEGFKEKKAKNLLE 504 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 +I +NI L R I +LGI H+G ++ LA + + + D+ +L R Sbjct: 505 AIANTKNIDLWRLIHALGIEHIGEGASKKLALAFG------------LECFDKDYDALTR 552 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 + G +A++ +EF + N + LLK ++P + + + V + KK+V TG++Q+ Sbjct: 553 IDGFGKEMAESFLEF--SQVNARLIHVLLKILTPKVQQTQNPVQNYFSAKKIVLTGSMQR 610 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 R + + +GA +S +S K D +I G+NPGSKL+KA++LGV I++E +F Sbjct: 611 -SREEVAALLEGVGAKISTSVSGKVDFVIYGENPGSKLDKARELGVGILSEAEFWE 665 >gi|260495084|ref|ZP_05815213.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_33] gi|260197527|gb|EEW95045.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_33] Length = 696 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 212/711 (29%), Positives = 361/711 (50%), Gaps = 50/711 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L +++ + + YY + +I D E+D L + +++ +P + P + Sbjct: 29 EKIVKLREDLDKYRNSYYNDNISLISDYEFDMLLKELESLEEKYPQYKEI---SSPTTSV 85 Query: 79 GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 G + KV H P LSL +NI ++ FI RI + K+ + + LE K+DG Sbjct: 86 GASLKENKFKKVEHIHPMLSLANSYNIGEIVDFIERIKKKISKE--QELKYCLEVKLDGL 143 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y +GK V A RGDG GEDV+ I I +I + L + +E+RGEV + Sbjct: 144 SISLTYRQGKLVRAVTRGDGLIGEDVTENILEITSIVKTLPQAM--DMEIRGEVVLPLAS 201 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYE 256 F LN+E + G + +ANPRNAASG LR+L+ + L+ + + L + ++ K E Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKERGLDAYFYFLVEADKLGFKSHSE 261 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++ + + T I + + R LPY+ DGLV KVDE +L ++G Sbjct: 262 SIKFLESMRIKTTGIFELLETSKEIEKRIDYWEKERENLPYETDGLVIKVDEINLWNEIG 321 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +++PRW I++KF Q ST L + Q+GRTG LTPVA L+ V + G+ + A+LHN Sbjct: 322 YTSKTPRWAIAYKFPAHQVSTVLNGVTWQVGRTGKLTPVAELQEVELSGSKVKRASLHNI 381 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 I+ +DIR+GDRV +++A E+IP+VV I +R + + P CP+ Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKSIKEDRTGNEKIIEEPVNCPV 430 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C ++ R+ K C A+ +++FVSRDA NI GLG + ++ F Sbjct: 431 CNHKLEREEGLVDIK-------CVNEECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFID 483 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ DI+ L+ ++ +ENI G S+ NL +SI + +N ++ I++ Sbjct: 484 ----LGYIKTVVDIYDLKNHRE----SLENIDKMGKKSIENLLNSIEESKNRDYDKVIYA 535 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +G ++ LAK + + L + +G+I A I+ F+ Sbjct: 536 LGIAEIGKVTSKILAKASKNIDKLM----------TMTFEELTSIDGIGEIAANEIIAFF 585 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + +N ++ L ++ + + N++ K +FTGTL+ R + +E + + Sbjct: 586 KKEKNQKIIQGLKEKGLKFEIKESETNTQNINPNFAGKNFLFTGTLKHFTREQIKEEIEK 645 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722 LG + +S+ D +IVG+ GSKL+KAQ++ +KI+ EE+F+ L +++ Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696 >gi|308450080|ref|XP_003088175.1| hypothetical protein CRE_02776 [Caenorhabditis remanei] gi|308249279|gb|EFO93231.1| hypothetical protein CRE_02776 [Caenorhabditis remanei] Length = 1202 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 208/808 (25%), Positives = 350/808 (43%), Gaps = 125/808 (15%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 IP+E E AR E L EI + YY + ++ D++YD L R +A+ AFP+LA Sbjct: 172 IPVE---FEAARVEAEQLTAEIERYRAAYYSEATSLVSDAQYDELFHRLEALERAFPELA 228 Query: 67 RSEDPNGPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 + P ++G + + H+ LSL+ ++++++ R++ + + + Sbjct: 229 GQ---DSPTQEVGSAVASAGFPEHEHAERMLSLDNVFSLDEFREWAEKARASSGR----A 281 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184 + + E KIDG I + Y G A RGDG GED++ + IP IPRVL IPE Sbjct: 282 VRWLTELKIDGLAIALAYRNGVLETATTRGDGRVGEDITENVDLIPVIPRVLEGEGIPEF 341 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGR--------------------KPYANPRNAASGIL 224 E RGEV+++ +F ALN+ A+ +AN RN A+G L Sbjct: 342 FEARGEVFLTTENFEALNERQHALQAEFAADQLAKGVPAEKITVRFPEFANARNTAAGSL 401 Query: 225 RRLN----------PTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQ 274 R+ D L+ +VHG+G Q + + + G PV+ R Sbjct: 402 RQRAEKKNERELELMRDRLGRLSLYVHGIGAWQHPDFANQSDAYELLSSWGLPVSPHSRV 461 Query: 275 ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQ 334 ++ ++ + + + R ++IDG+V K+DE L ++LGE +R+PRW I++K+ ++ Sbjct: 462 LDSVDEVLEFIEDRGAHRHDFEHEIDGIVIKIDELELHRELGETSRAPRWAIAYKYPPEE 521 Query: 335 ASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRD 394 T+LL I + +GRTG TP A +EPV + G+ ++ ATLHN+ +K + Sbjct: 522 VYTKLLAIRVGVGRTGRATPYAVMEPVKVAGSTVSQATLHNQQVVK-----------AKG 570 Query: 395 IRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454 + +GD V++++AG+VIP+V+ ++ R + P CP C + + + Sbjct: 571 VLIGDTVVLRKAGDVIPEVLGAVLERRDGSEVEWQMPVECPECGTELRAM-----KEGDI 625 Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED--------PAFSI-- 504 RC AC AQ R++H SR +IE LG+ + E A Sbjct: 626 DLRCPNARACPAQVRGRVEHIGSRGGLDIEVLGEITAAALTQPEVPSVPPLETEAGLFDL 685 Query: 505 -------------------------------RIPADIFTLQR----------RQQTSTTK 523 R P T++ ++ + + Sbjct: 686 TLEELVPITVVVRDSETGEPVIDEATGEPRRRSPFQRVTVEYPPEAEGMDATARRQAGFR 745 Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583 ++ + + + + L R I SL IRHVG AR+LA ++ S Sbjct: 746 KDHRVVRPSKDAETFLAELERAKTKPLWRLIVSLNIRHVGPVAARALADWFGSLDAIRAA 805 Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR----- 638 L V VG IIA++++E+++ + VE Sbjct: 806 ----------SVEELSAVDGVGGIIAESLLEWFEVDWHREIVERWTAAGVQWTTPGHPGP 855 Query: 639 -HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697 + +V TG+L R A+E + Q G ++ +S+KTD + G GSK Sbjct: 856 GAAVAEGGVLAGLTVVATGSLDGFTRDGAKEAIIQAGGKAASSVSKKTDFVAAGPGAGSK 915 Query: 698 LEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 L KA++LG+ +++ QF L+ + L Sbjct: 916 LAKAEELGIPVLDASQFAVLVSEGPAAL 943 >gi|302392792|ref|YP_003828612.1| DNA ligase, NAD-dependent [Acetohalobium arabaticum DSM 5501] gi|302204869|gb|ADL13547.1| DNA ligase, NAD-dependent [Acetohalobium arabaticum DSM 5501] Length = 671 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 205/699 (29%), Positives = 340/699 (48%), Gaps = 58/699 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E +E+ L +++ ++ YY P++ D EYD L R + P Sbjct: 5 ETLEQEMKKLINKLNKYNYHYYVLDDPLVSDKEYDQLYDRLVELEEE----TGKVLSGSP 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW-------QKKDDNSIF 127 ++G E H P SL+K +LR + RI R + Sbjct: 61 TQRVGAEPLDEFDSHQHLAPLWSLDKAQTGGELRDWDERIRRLIADYNREHPENPLPEPL 120 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 +T+E K DG I + YE+G+ V AA RG G GE + ++ I TIP + +EV Sbjct: 121 YTVEYKFDGLTINLTYEEGELVQAATRGTGEVGEAILEQVKTIKTIPLQIP-FKSGKLEV 179 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 +GE + + N + P N RNAA+G LR L+P R L+ F + +G Sbjct: 180 QGEGIMRLSVLEEYNQQA----ETPLKNARNAAAGALRNLDPKVTAERNLDAFFYSIGYY 235 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 I E+L +R F VN+ ++ + ++ ++ L Y +DG+V KV Sbjct: 236 EGIEFDTHLEILDFLRENRFMVNDYLKTFDEIEDVIEEMETIEEKVDDLDYLVDGMVIKV 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ Q+ LG AR+PRW I++KFA K+ +T LLD+ Q+GRTG LTPVA LEPV+I GA Sbjct: 296 NDLRTQEVLGYTARAPRWAIAYKFAAKEVTTTLLDVKWQVGRTGKLTPVALLEPVDIEGA 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ ATL+N D I+ +D+ G RV ++R+ +VIP+++ + E + + Sbjct: 356 TVSKATLNNWDDIQR-----------KDVAKGCRVWLRRSNDVIPEIIGRVETEEIEEVE 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + P CP C S +V+D C L C Q + R+ HF SRDA IE Sbjct: 405 EIAKPEECPDCGSSLVQD--------GVHLFCPNSLFCKPQLVARVAHFASRDALEIETF 456 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 ++ + ++ +R AD++ ++ ++ + GFG+ NL D++ + + Sbjct: 457 SEKTAEKLYEE----LGLRDIADLYDIE------YEELLELEGFGEQKAENLIDALEESK 506 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 ++ L FI+ LG+ +VG A LA + S + + D L+ + +G+ Sbjct: 507 DVELSSFIYGLGVPNVGTRTAELLADKFKSLERLMEA----------DKEELVEINGIGE 556 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRH 664 ++A+ IV+F+ + +++ +L+ E S ++ +V TG+L + R Sbjct: 557 VVAEEIVDFFADENIQGSIQRMLEAGVEPNYEAIEEVQEDSPFVDQTIVMTGSLPGLTRS 616 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 +A+E + LG V++ +S TDI+IVG+NPGSKL+KA+Q Sbjct: 617 EAKEKIKALGGKVTSSVSGNTDILIVGENPGSKLDKARQ 655 >gi|307718507|ref|YP_003874039.1| DNA ligase [Spirochaeta thermophila DSM 6192] gi|306532232|gb|ADN01766.1| DNA ligase [Spirochaeta thermophila DSM 6192] Length = 673 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 213/721 (29%), Positives = 343/721 (47%), Gaps = 59/721 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ ++A+KE+ L + + D YY +P + D EYD+L R + FP L R+ Sbjct: 1 MTEQEAKKEIDRLVELLQRADYEYYVLGRPHLTDQEYDSLFDRLKTLEAQFPHLKRA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G ++ + +V H+IP LSL+K + ++ +I + R + + +E Sbjct: 58 DSPTQRVGSDLTVDFPEVAHTIPVLSLDKAYTETEVLSWIEKTERAAGR----PLGCVIE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG + + Y G A RG+G G D++ R I IP + + VRGEV Sbjct: 114 EKIDGVSLVLYYRGGILDRAVTRGNGRVGNDITPNARTIRQIPLRIPE--TGEVVVRGEV 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 Y+ F +N M PYANPRN A G+LRR N ++ R F+ G A Sbjct: 172 YLPLQYFDEINARM----EVPYANPRNLAGGVLRRKNSAEVARVPLHFLAYDGYLPFPVA 227 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQAN----TFHGIVSYYNEMKSIRSTL-PYDIDGLVYKV 306 E L + GFPVN + + + E + Y IDGLV+KV Sbjct: 228 TY-TESLDLLIEWGFPVNPRHERIPAGTPDRAERIRAFIEKERTERATLDYQIDGLVFKV 286 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 +E ++ +LG PRW I++KF QA T L+ ID+Q+GRTG +TPVARL+PV + G+ Sbjct: 287 NELDVRDRLGYTGHHPRWAIAYKFEAPQAVTELVRIDVQVGRTGRVTPVARLKPVELSGS 346 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 I+N TLHNEDY++ L+ + GD V + + G+VIP + ++ Sbjct: 347 TISNVTLHNEDYVQALE-----------LAPGDLVAISKRGDVIPAIEKVVEKN-EEGVP 394 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + P CP C SR+ + AH +C A RLK FVS +I L Sbjct: 395 VWRMPEHCPECSSRL---------ERRGAHHFCPNRSCPAVITGRLKFFVSPKQMDIRVL 445 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +DF + IR D++T R+ + GFG+ + + I + + Sbjct: 446 GNETIDFLVEK----GYIRRIPDLYTFDYRRL------LDEPGFGEKKINLIVQGIEESK 495 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLS-YQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + +LGI VG + +L + ++ + + D +L R+ +G Sbjct: 496 RRPFSTVLVALGIPDVGPSVVETLIRGGITGIDRLLE------IADRGDVDALTRLEGIG 549 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQ-R 663 + A+ ++E ++P +E L K + VS E + TG+ + R Sbjct: 550 EKTARQLIETLRDPEWRKEIEELRKAGLSFEEERPEAVSGGPFEGQVWCVTGSFRHFTPR 609 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 +A+E ++ LG V + +S KT ++VG+NPGSKLEKA+ LGV+++ E+QF+ +L+ Sbjct: 610 SRAEELISSLGGRVVSSVSSKTTHLLVGENPGSKLEKARSLGVQLVTEDQFIEMLKGAGV 669 Query: 724 T 724 Sbjct: 670 D 670 >gi|148272584|ref|YP_001222145.1| NAD-dependent DNA ligase LigA [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|166215575|sp|A5CQU5|DNLJ_CLAM3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|147830514|emb|CAN01449.1| NAD-dependant DNA ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 853 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 210/782 (26%), Positives = 344/782 (43%), Gaps = 99/782 (12%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +E A + +L EI H D YY + D+EYDAL +A+ A P L + Sbjct: 22 DLEAASARVDALRTEIERHRDEYYGADASTLSDAEYDALVHELEALEEAHPTL---RSQD 78 Query: 73 GPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P +GG + VTH+ LSL+ +++ E+L ++ ++ R + + E Sbjct: 79 SPTQTVGGRAETTLFAPVTHAERMLSLDNVFSEEELAEWAAKVERDAG---SGRVRYLSE 135 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 KIDG I +RYE G V AA RGDG GEDV+ + + T+P L + P ++EVRGE Sbjct: 136 LKIDGLAINLRYEHGVLVTAATRGDGVVGEDVTQNVLTMGTVPERLMGSGHPPLVEVRGE 195 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN----------PTDITRYLNFFV 240 ++ +F LN + VG + +ANPRNAA+G LR+ R L V Sbjct: 196 IFFPVAEFDELNARQLEVGERVFANPRNAAAGSLRQKEEGKSPARLELMRARIRRLRMLV 255 Query: 241 HGLGKTS------EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 HG+G + Q E+ + G P++ R + + + + R+ Sbjct: 256 HGIGAWPVRELASDAHVSAQSEVYGLLAGWGLPISTHFRVFDDISEVTEFVRRHGAHRAE 315 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 + + IDG+V KVD+ L ++LG +R+PRW ++K+ ++ +T LLDI + +GRTG TP Sbjct: 316 VEHQIDGIVVKVDDLGLHEELGATSRAPRWATAYKYPPEEVNTTLLDIVVSVGRTGRATP 375 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 A +E V + G+ + ATLHN+ +K + + +GD V++++AG+VIP+V+ Sbjct: 376 FAVMEKVEVAGSEVRQATLHNQQVVK-----------AKGVLIGDTVVLRKAGDVIPEVL 424 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 +V R + F P+ CP CQ+ + + RC +C AQ R++H Sbjct: 425 GPVVELRDGTEREFVMPTLCPECQTPLR-----PAKEGDIDLRCPNARSCPAQVRGRVEH 479 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDP------------------------------AFSI 504 SR A +IEGLG+ + +P + Sbjct: 480 VASRGALDIEGLGEVAAAALTQPLEPEDPPLETEAGLFELTMADLVPITVVVRDAETGMV 539 Query: 505 R-----------IPADIFTLQRRQQTSTTK--IENILGFGDVSVTNLYDSINKRRNISLE 551 + P +R + S L ++++K + L Sbjct: 540 KVDEKTGEAKRVTPFRRRRAPKRDGVFDPAAPWGDEDSVPSKSAEVLLENLDKAKTQDLW 599 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R + +L IRHVG AR+LA ++ S L V VG IIA A Sbjct: 600 RILVALSIRHVGPVAARALAGWFGSLDAIRSA----------SREELAAVDGVGGIIADA 649 Query: 612 IVEFYQNPRNICAVEALLKEVSPSI------GRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++++++ + V+ K + +V TG+L+ R Sbjct: 650 LLDWFEVDWHREIVDRWRKAGVVMEVPGHPGPGAAAAAGGVLAGLTVVATGSLEGYTREG 709 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 A E + G + +S+KT + G GSKL KA+ LGV+I++ +F L++Q + Sbjct: 710 ALEAIMAAGGKAGSSVSKKTHYVAAGPGAGSKLGKAEALGVRIIDAAEFRLLVEQGPDAI 769 Query: 726 RI 727 + Sbjct: 770 AL 771 >gi|262066346|ref|ZP_06025958.1| DNA ligase, NAD-dependent [Fusobacterium periodonticum ATCC 33693] gi|291379910|gb|EFE87428.1| DNA ligase, NAD-dependent [Fusobacterium periodonticum ATCC 33693] Length = 696 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 218/711 (30%), Positives = 367/711 (51%), Gaps = 50/711 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L++++ + D YY ++ +I D E+D L + +++ +P+ + + P + Sbjct: 29 ERIVKLKEDLDKYRDSYYNDNESLISDYEFDILLKELESLEEKYPEYKEA---SSPTASV 85 Query: 79 GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 G + KV H+ P LSL +NI ++ FI RI + K++ + + LE K+DG Sbjct: 86 GASLKENKFKKVEHAHPMLSLANSYNIGEVVDFIERIKKRISKEE--ELKYCLEVKLDGL 143 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y +GK V A RGDG GEDV+ I I ++ + L I IE+RGE+ + Sbjct: 144 SISLTYVQGKLVRAVTRGDGFIGEDVTENILQIASVVKTLPQAI--DIEIRGEIVLPLAS 201 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYE 256 F LN+E + G + +ANPRNAASG LR+L+P + L+ + + L + ++ K E Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDPKIVKERALDAYFYFLVEADKLGLKSHSE 261 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++ + +G I + + R LPY+ DGLV KVDE +L ++G Sbjct: 262 SMKFLESMGIKTTGIFELLENSKDIEQRIDYWEKERENLPYETDGLVIKVDEINLWDEIG 321 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +++PRW I++KF Q ST L D+ Q+GRTG LTPVA LE V + G+ + A+LHN Sbjct: 322 YTSKTPRWAIAYKFPAHQVSTVLNDVTWQVGRTGKLTPVAELEEVELSGSKVKRASLHNI 381 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 I+ +DIR+GDRV +++A E+IP+VV I ER + + P CP+ Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKIIEEPINCPV 430 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C ++ R+ K C A+ +++FVSRDA NI GLG + ++ F Sbjct: 431 CDHKLEREEGLVDIK-------CVNEECPAKIQGEIEYFVSRDALNIMGLGSKIVEKFID 483 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ DI+ L+ ++ +ENI G S+ NL +SI + +N ++ I++ Sbjct: 484 ----LGYIKTVVDIYDLKTHRE----DLENIDKMGKRSIENLLNSIEESKNREYDKVIYA 535 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +G ++ LAK + + + L + +G+I A I+ F+ Sbjct: 536 LGIPFIGKVASKVLAKASKNIDKLM----------SMTFEELTAIEGIGEIAANEIIAFF 585 Query: 617 QNPRNICAVEALLKEVSPSI----GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + + V AL ++ +N++ K +FTGTL+ R + +E + + Sbjct: 586 KKEKTQKLVAALKEKGLKFEITESETKVENLNPNFAGKNFLFTGTLKHFTREQIKEEIEK 645 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722 LG + +S+ D +IVG+ GSKL+KAQ++ +KI+ EE+F+ L +++ Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696 >gi|254303498|ref|ZP_04970856.1| DNA ligase (NAD(+)) [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323690|gb|EDK88940.1| DNA ligase (NAD(+)) [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 696 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 222/711 (31%), Positives = 366/711 (51%), Gaps = 50/711 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L +++ + D YY +K +I D E+D L + +++ +P + + P + Sbjct: 29 EKIVKLREDLDKYRDSYYNDNKSLISDYEFDILLKELESLEEKYPQYKET---SSPTTSV 85 Query: 79 GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 G + KV H+ P LSL +NI ++ FI RI + K+ + + LE K+DG Sbjct: 86 GASLKENKFKKVEHAHPMLSLANSYNIGEIVDFIERIKKKISKE--QELKYCLEVKLDGL 143 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y +GK V A RGDG GEDV+ I I +I + L I +E+RGEV + Sbjct: 144 SISLTYRQGKLVRAVTRGDGLIGEDVTENILEIASIVKTLPQAI--DMEIRGEVVLPLAS 201 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYE 256 F LN+E + G + +ANPRNAASG LR+L+ + L+ + + L + ++ K E Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKERGLDAYFYFLVEADKLGLKSHSE 261 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++ + +G T I + + R LPY+ DGLV KVDE +L ++G Sbjct: 262 SIKFLEAMGIKTTGIFELLETSKDIEKRIDYWEKERENLPYETDGLVIKVDEINLWNEIG 321 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +++PRW I++KF Q ST L D+ Q+GRTG LTPVA LE V + G+ + A+LHN Sbjct: 322 YTSKTPRWAIAYKFPAHQVSTVLNDVTWQVGRTGKLTPVAELEEVELSGSKVKRASLHNI 381 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 I+ +DIR+GDRV +++A E+IP+VV I ER + + P+ CP+ Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKVIEEPTHCPV 430 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C ++ R+ K C A+ +++FVSRDA NI GLG + ++ F Sbjct: 431 CNHKLEREEGLVDIK-------CINEECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFID 483 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ DIF L+ ++ +ENI G S+ NL +SI + +N ++ I+S Sbjct: 484 ----LGYIKTVVDIFDLKEHKE----ALENIDKMGKRSIENLLNSIEESKNRDYDKVIYS 535 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +G ++ LAK + + L + +G+I A I+ F+ Sbjct: 536 LGIPFIGKVASKVLAKASRNIDKLM----------TMTFEDLTSIEGIGEIAANEIIAFF 585 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 +N ++ L ++ + + NV+ K +FTGTL+ R + +E + + Sbjct: 586 NKEKNQKIIQGLKEKGLKFEIKESEINVQNVNPNFAGKNFLFTGTLKHFTREQIKEEIEK 645 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722 LG + +S+ D +IVG+ GSKL+KAQ++ +KI+ EE+F+ L +++ Sbjct: 646 LGGKNLSSISKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696 >gi|299144358|ref|ZP_07037438.1| DNA ligase, NAD-dependent [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518843|gb|EFI42582.1| DNA ligase, NAD-dependent [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 664 Score = 455 bits (1171), Expect = e-125, Method: Composition-based stats. Identities = 204/709 (28%), Positives = 334/709 (47%), Gaps = 58/709 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + L +++ + YY PI+ D+EYD L + + N P Sbjct: 2 EIIDRIRELIDKVNKLNYHYYTLDDPIVSDAEYDELYYELKKLEDEN----KIILANSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK-----KDDNSIFFTL 130 ++GGE+ K TH P SL+K + E+LR + R + Q K+ ++ + + Sbjct: 58 TRVGGEVLSKFEKHTHIAPLYSLDKAQSYEELRAWHERNLKALQSYRASGKNIENLKYVV 117 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K DG I + YE G A+ RG+G GE++ I+ I +IP L + ++EV+GE Sbjct: 118 ELKFDGLTINLTYEDGYLKMASTRGNGFIGEEILPQIKTIYSIP--LEIPYKGLMEVQGE 175 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 + + N + N RNAA+G LR L+P +R L F + +G + Sbjct: 176 GLMPLSSLEKFN----RTHDEQLKNARNAAAGALRNLDPKVTKSRNLTAFFYNVGYIKDD 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + EM + +R GF VN ++ ++ SIR +L IDG+ K+++ Sbjct: 232 RFRDDSEMKKFLRDNGFRVNENNYICKNLDEVIEKIEKIGSIRESLDILIDGVTIKINDM 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + LG + PRW I++KF K+ ST+LLD+ +GRT +TP A L+PV IGG I Sbjct: 292 ETRDLLGFTNKFPRWAIAYKFEAKEVSTKLLDVVWNVGRTSKVTPSAILQPVEIGGVTIK 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATL+N D I + IR+ RVL++R+ +VIP+++ + E Sbjct: 352 KATLNNYDDI-----------LKKKIRINGRVLLRRSNDVIPEILGALPTEEETIEIEM- 399 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P +CP C + + K C L+C Q + RL HF SRDA NIEGL + Sbjct: 400 -PKYCPSCGTELF--------KDGVHIFCPNTLSCVPQLVSRLTHFASRDAMNIEGLSEM 450 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + D IR I+ L+++ + GF + NL +I + Sbjct: 451 TISKLLNELD----IREIPQIYELEKQDL------LKLEGFKEKRANNLISAIADSKIRP 500 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L FI+SLGI +VG + A LA + + + L+ + +G I A Sbjct: 501 LPNFIYSLGINNVGIKTAYDLANKFKDFDLLRHA----------KYDELVDIDDIGPITA 550 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 + IVEF+ + +++ L + + + ++K++V TGTL I R + + Sbjct: 551 KEIVEFFNDKHIEKSIDRLFELGVSPKFEESTDEETYFKDKRIVITGTLS-IPRKELENM 609 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + GA +S+ +S+ TD +I G++ GSK +KA LG++I++E + LL Sbjct: 610 LIKFGAKISSSVSKNTDFVIAGEDAGSKYDKAINLGIEIIDENKLRELL 658 >gi|228904740|ref|ZP_04068794.1| DNA ligase [Bacillus thuringiensis IBL 4222] gi|228854754|gb|EEM99358.1| DNA ligase [Bacillus thuringiensis IBL 4222] Length = 656 Score = 455 bits (1170), Expect = e-125, Method: Composition-based stats. Identities = 216/709 (30%), Positives = 356/709 (50%), Gaps = 56/709 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + R L E++ + YY KPI D+EYD L I P+ + Sbjct: 1 MFDLRARYLHLVGELTMLNHHYYTMDKPIASDAEYDRLYDELVKIEELHPEWTVAH---S 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P N++GGE+ K H++P SLEK + +RKF+ + R + + FT+E K Sbjct: 58 PSNRVGGEVLDKFEKKEHTMPLYSLEKSQTYDGVRKFVEDVKR-----EFPNATFTIEQK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +RY G F RG G GE VS I+ I +IP L++ +IE RGEV++ Sbjct: 113 MDGLANVLRYSGGSFSEGRTRGTGKIGEIVSEQIKTIRSIP--LNIRFQGVIEPRGEVFM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAK 252 + F A N + G P NPRN A+G LR L+P + F + + + I + Sbjct: 171 PISGFEAYNASL-PEGEAPLKNPRNGAAGALRNLDPRIAASRPLDAFWYDIAYSEGITFE 229 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q EM+ ++ GF +N ++ I+ EMK +R TL +DIDG+V KV+E ++ Sbjct: 230 TQAEMMTFLQEQGFKINPYFYVTDSIDVIIEKLEEMKEVRPTLNWDIDGMVIKVNELHIR 289 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG ++ P+W I++KF + +T L + ++GRTG LTP+A LEPV+IGG +T AT Sbjct: 290 EELGYTSKFPKWAIAYKFEAVEETTTLNSVTWEVGRTGKLTPLAHLEPVDIGGTTVTKAT 349 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 L+N D I + ++VG V V+R+ +VIP+++ I+ + P+ Sbjct: 350 LNNYDDI-----------LRKGVKVGAEVFVRRSNDVIPEIMGIVEG---SEGTEIVPPT 395 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C++ +V+D A RC +CSAQ + + HF SR+A NI+ ++ + Sbjct: 396 HCPECETVLVQD--------GAHLRCMNIDSCSAQSVGKFTHFASREAMNIDSFSEKTAE 447 Query: 493 FFFKSEDPAFSIRI-PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F+ A IR D++ L R ++ + FG+ L +I + ++ +LE Sbjct: 448 QLFE----AGLIRNSFVDLYRLDR------NELLKLDRFGERKADRLLAAIEESKSRTLE 497 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 FI++LG+RH G A L +YY + + A L+R+ +G +AQ+ Sbjct: 498 AFIYALGMRHSGKGTAERLLRYYNNIDDIANA----------SVEDLMRIEDIGSAVAQS 547 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 I +++ N RN+ +E L + +++E V TG + + R + + ++ Sbjct: 548 IFDYFHNERNLQMIEELKALGLTLTHVAAVSSGNQLEGNTFVITGKVSR-PRKEIEAFIK 606 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G S +S+ T+ ++ G+ GSKL KAQ LGV ++ EEQ ++ + Sbjct: 607 EHGGKASGSISKNTNYLVAGEAAGSKLAKAQSLGVTVITEEQLYKMVNE 655 >gi|320094066|ref|ZP_08025884.1| NAD-dependent DNA ligase LigA [Actinomyces sp. oral taxon 178 str. F0338] gi|319979007|gb|EFW10532.1| NAD-dependent DNA ligase LigA [Actinomyces sp. oral taxon 178 str. F0338] Length = 776 Score = 455 bits (1170), Expect = e-125, Method: Composition-based stats. Identities = 204/788 (25%), Positives = 343/788 (43%), Gaps = 100/788 (12%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E S + R L I YY P + D+EYD L R + I A P L + Sbjct: 3 EHESFDAIRSRYDQLVAAIEEARRAYYDRDAPTLADAEYDRLYRELEDIERAHPQLRGA- 61 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 + P +GG + + V H SL+ ++++E+L + R++ + + + T Sbjct: 62 --DSPTLSVGGSADSAFAPVRHLQQMTSLDDVFSLEELAGWEQRMHE---ETGEAELPMT 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVR 188 E K+DG + + Y G AA RGDGH GED++A +R I +IP L P +E+R Sbjct: 117 AEVKVDGLAVNLLYVDGALRRAATRGDGHVGEDITANVRTIASIPARLDTAAPPRRVEIR 176 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247 GEVY +F + N+ +A G + + NPRNAA+G LR+ + ++ R L HG+G Sbjct: 177 GEVYFPVAEFASFNEARVAAGERAFVNPRNAAAGSLRQKDSSETAKRPLAMVAHGVGFVE 236 Query: 248 ----EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 Q+ Q +R G PV+ R I + E R +L ++IDG+V Sbjct: 237 AGGAFTPPTTQHGWYQLLREWGMPVSPYTRLLTGRGAIEEFIAETGEARHSLAHEIDGVV 296 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 K+D+ +LQ+ LG +R+PRW ++KF ++ TRLLDI +Q+GRTG +TP +E V + Sbjct: 297 VKIDDLALQRSLGSTSRAPRWAAAYKFPPEEVHTRLLDIRVQVGRTGRVTPYGVMESVLV 356 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G+ + ATLHN +K + + +GD V++++AG+VIP++V + R+ Sbjct: 357 AGSNVARATLHNAQEVKR-----------KGVLIGDLVVLRKAGDVIPEIVAPVEEARNG 405 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + FS P+ CP C + +V + + RC AC AQ ER+ H +R A +I Sbjct: 406 SEREFSMPAACPSCGTALV-----EEKEGDVDLRCPNKAACPAQITERIAHIGARSALDI 460 Query: 484 EGLGKQQLDFFFKSED-------------------------------------------- 499 EGLG + + E+ Sbjct: 461 EGLGDEAALALTQPENNRDQVAAALVAGHAVVLEDGTRLELADAEDLPHAEQLATADAML 520 Query: 500 ---PAFSIRIPADIFTLQRRQQTSTTKIEN-----ILGFGDVSVTNLYDSINKRRNISLE 551 A + + +F L+ V + ++ + + E Sbjct: 521 PEPQAPVLTAESALFDLRAEDVRDVMVWRPTTVKGEPTGDWAQVRYFWTKAHRAKKVKGE 580 Query: 552 RFIFSLG----------IRHVGAEIARSLAKYY--LSYQNFAQEINNIIAHNNDDWLSL- 598 +G + + ++ LA+ LS ++ +A +L Sbjct: 581 TVYERVGTTASKMLTQMLDEMERAKSQPLARVLVALSIRHVGPTAARALAARFGSMDALR 640 Query: 599 -------IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651 V VG +IAQ++ ++++ + + + + V + +E Sbjct: 641 AADVEELAAVDGVGGVIAQSLADWFEVDWHREILRRWSEAGVRMEDEAPEEVPAVLEGLT 700 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 +V +G + R A+E +T G S +S+KT +++ G GSK KA+ LGV +++E Sbjct: 701 IVVSGAMPGYDREGAKEAITARGGKASGSVSKKTSLVVAGPGAGSKAAKAESLGVPVISE 760 Query: 712 EQFLFLLQ 719 QF LL+ Sbjct: 761 AQFADLLE 768 >gi|171920530|ref|ZP_02695360.2| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|171903225|gb|EDT49514.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 13 str. ATCC 33698] Length = 673 Score = 455 bits (1170), Expect = e-125, Method: Composition-based stats. Identities = 216/712 (30%), Positives = 368/712 (51%), Gaps = 53/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ + +++ L+Q++ + YY P + D YD R + +A+P + N Sbjct: 1 MDRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQAMRELIELENAYPQFKTN---NS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG ++ KV H P LSL ++ DLRKF + +EPK Sbjct: 58 PSVRVGGFVSEKFNKVKHKRPMLSLSNAFDANDLRKFDQDNQNASVDLKG----YVVEPK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192 IDG I+I Y+ K A RGDG +GEDV++ I I IP + + IEVRGEVY Sbjct: 114 IDGLSISIIYKNAKLHQAITRGDGVNGEDVTSNILTIKDIPHYIDQKYKDYEIEVRGEVY 173 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251 ++ +DF +ND + + +ANPRNAA+G LR L+ + R L+ F++ L E+ Sbjct: 174 MAFHDFYEMNDNLEESDK-KFANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQELGI 232 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 K YE +Q ++ F V++ + + +T +++ + +R+ L Y IDG+V K++ + Sbjct: 233 KTHYESIQFLKDNKFKVSDLIVKVDTIDEVINQIDRYTKVRNDLSYMIDGIVIKINNLEV 292 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 ++G ++ P+W I++KF S++LL+I +GRTG ++ VA+++P+ + G+++ A Sbjct: 293 YDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSIVEYA 352 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D+IK +DIR+ D + + +AG+VIP V + +++R ++ P+ Sbjct: 353 TLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVNLSKRLANSVPYESI 401 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP CQS +VR+ + RC C +E++ +FVSR+ NIEG+ + Sbjct: 402 TNCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCINIEGMSDAII 455 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F+ A I+ AD++ LQ+ ++ I D S +NL +SIN + SLE Sbjct: 456 NKFYD----ANLIKNVADLYYLQKHKEFILASDFKI---KDKSFSNLINSINNSKTRSLE 508 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + GIRHVG +A+ LAK + + ++ L V G+ A + Sbjct: 509 FLLTAFGIRHVGPNLAKKLAKQFKTMTTLMHA----------NFDELTNVDACGEKAALS 558 Query: 612 IVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++ ++ + NIC + L + I N+ E +NK V TG+ I R + Sbjct: 559 LINWFNDDHNICLINQLEQVGVNMEYIDDFIYDENINIVDEYKNKTFVITGSFS-ISRDE 617 Query: 666 AQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + + + A V +S+KTD ++ G G+KLEKA+ LGVKI+ E +F Sbjct: 618 IKTILEKYYHAKVKNSVSKKTDYVLAGIEAGTKLEKAKLLGVKII-ENEFWK 668 >gi|166215834|sp|Q18E49|DNLJ_HALWD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 736 Score = 455 bits (1170), Expect = e-125, Method: Composition-based stats. Identities = 231/722 (31%), Positives = 368/722 (50%), Gaps = 54/722 (7%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 PIE LS E A ++ + L + I HD YY + PII D YD L R A+ D+ Sbjct: 63 FRPIEQLSEEAAVEQATQLREAIREHDYQYYIRASPIIADRAYDILFDRLQALE----DI 118 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 + P ++GGE L V H LS+++ ++ +R F R+ Sbjct: 119 FNLDTEASPTRRVGGEPLDELETVEHVTSMLSIDQSTAVDSVRDFDERVRDVVG-----D 173 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + + EPK DG + + YE G+++ AA RGDG+ G+DV+A + + +P L + P + Sbjct: 174 LEYICEPKFDGLSVEVIYEDGEYIRAATRGDGNRGDDVTAQVETVGAVPLKLHGDYPSYL 233 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245 VRGEVY+ K F N E I KP+ANPRNAA+G LR+L+P + Sbjct: 234 AVRGEVYMPKAGFREYNRERIECDEKPFANPRNAAAGTLRQLDPGVVAERPLSCFFYDIL 293 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + Q+ L ++ G N+ + + ++ ++Y +++K+ R+ L Y+IDG V K Sbjct: 294 DATELPPDQWTTLNDLQSWGLRTNDRISRVDSIDDAIAYRDQLKAARAELNYEIDGTVIK 353 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ ++ LG +RS RW ++KF + T + DI +Q+GRTG LTPVA L+PV++GG Sbjct: 354 VNDRGNREILGATSRSVRWAFAYKFPPRAEITHITDIVVQVGRTGRLTPVALLDPVDVGG 413 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ A+LHN + IK L + GD V V+RAG+VIP+V ++ Sbjct: 414 VTVSRASLHNPEEIKRLSVNS-----------GDEVRVRRAGDVIPEVAEVTQKRATG-- 460 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 F+FP+ CPIC S V +D CTGGL C AQ + + H+ SR A +I+G Sbjct: 461 -TFNFPNQCPICHSSVEQD--------GPLAFCTGGLTCDAQLVRTIVHYGSRSALDIDG 511 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG+Q+++ +S I AD++TL + + G+G S NL +I++ Sbjct: 512 LGEQRVEQLVES----GVIGELADLYTLSVADLSK------LDGWGTTSAENLIQAISET 561 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + SL F+ LGI VG IAR+LA + ++ D +L + +G Sbjct: 562 QTPSLTDFLVGLGIPEVGPTIARNLAGTFDNFDAIIDA----------DEAALREIEDIG 611 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 ++ I EF+ N +N A++ LL P + ++ + + VFTG+L + R Sbjct: 612 PTVSTHISEFFTNEQNRAAIDNLLSAGVTPQTQQSTATTNAPLSDLTFVFTGSLS-VPRT 670 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQYNT 723 A Y+ + G + +S TD +++GDNPGS K A++ V ++E +F LL +++ Sbjct: 671 TATTYIERHGGNATGSVSSNTDYLVIGDNPGSTKRIDAERNDVPEIDETEFTELLAEHDD 730 Query: 724 TL 725 TL Sbjct: 731 TL 732 >gi|110669547|ref|YP_659358.1| NAD-dependent DNA ligase LigA [Haloquadratum walsbyi DSM 16790] gi|109627294|emb|CAJ53784.1| DNA ligase (NAD) [Haloquadratum walsbyi DSM 16790] Length = 770 Score = 455 bits (1170), Expect = e-125, Method: Composition-based stats. Identities = 231/722 (31%), Positives = 368/722 (50%), Gaps = 54/722 (7%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 PIE LS E A ++ + L + I HD YY + PII D YD L R A+ D+ Sbjct: 97 FRPIEQLSEEAAVEQATQLREAIREHDYQYYIRASPIIADRAYDILFDRLQALE----DI 152 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 + P ++GGE L V H LS+++ ++ +R F R+ Sbjct: 153 FNLDTEASPTRRVGGEPLDELETVEHVTSMLSIDQSTAVDSVRDFDERVRDVVG-----D 207 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + + EPK DG + + YE G+++ AA RGDG+ G+DV+A + + +P L + P + Sbjct: 208 LEYICEPKFDGLSVEVIYEDGEYIRAATRGDGNRGDDVTAQVETVGAVPLKLHGDYPSYL 267 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245 VRGEVY+ K F N E I KP+ANPRNAA+G LR+L+P + Sbjct: 268 AVRGEVYMPKAGFREYNRERIECDEKPFANPRNAAAGTLRQLDPGVVAERPLSCFFYDIL 327 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + Q+ L ++ G N+ + + ++ ++Y +++K+ R+ L Y+IDG V K Sbjct: 328 DATELPPDQWTTLNDLQSWGLRTNDRISRVDSIDDAIAYRDQLKAARAELNYEIDGTVIK 387 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ ++ LG +RS RW ++KF + T + DI +Q+GRTG LTPVA L+PV++GG Sbjct: 388 VNDRGNREILGATSRSVRWAFAYKFPPRAEITHITDIVVQVGRTGRLTPVALLDPVDVGG 447 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ A+LHN + IK L + GD V V+RAG+VIP+V ++ Sbjct: 448 VTVSRASLHNPEEIKRLSVNS-----------GDEVRVRRAGDVIPEVAEVTQKRATG-- 494 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 F+FP+ CPIC S V +D CTGGL C AQ + + H+ SR A +I+G Sbjct: 495 -TFNFPNQCPICHSSVEQD--------GPLAFCTGGLTCDAQLVRTIVHYGSRSALDIDG 545 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG+Q+++ +S I AD++TL + + G+G S NL +I++ Sbjct: 546 LGEQRVEQLVES----GVIGELADLYTLSVADLSK------LDGWGTTSAENLIQAISET 595 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + SL F+ LGI VG IAR+LA + ++ D +L + +G Sbjct: 596 QTPSLTDFLVGLGIPEVGPTIARNLAGTFDNFDAIIDA----------DEAALREIEDIG 645 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 ++ I EF+ N +N A++ LL P + ++ + + VFTG+L + R Sbjct: 646 PTVSTHISEFFTNEQNRAAIDNLLSAGVTPQTQQSTATTNAPLSDLTFVFTGSLS-VPRT 704 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQYNT 723 A Y+ + G + +S TD +++GDNPGS K A++ V ++E +F LL +++ Sbjct: 705 TATTYIERHGGNATGSVSSNTDYLVIGDNPGSTKRIDAERNDVPEIDETEFTELLAEHDD 764 Query: 724 TL 725 TL Sbjct: 765 TL 766 >gi|255321406|ref|ZP_05362566.1| DNA ligase, NAD-dependent [Campylobacter showae RM3277] gi|255301559|gb|EET80816.1| DNA ligase, NAD-dependent [Campylobacter showae RM3277] Length = 647 Score = 455 bits (1170), Expect = e-125, Method: Composition-based stats. Identities = 215/703 (30%), Positives = 338/703 (48%), Gaps = 60/703 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +KE ++ YY PI D EYD L + A P + Sbjct: 3 KKEYLEAVDTLNAWAKAYYTDDAPIATDEEYDELYHKVLEFERAN---LGEISMFSPTKR 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE++ K H S+E I++ ++L ++ R D + F L+PK DG Sbjct: 60 VGGEVSEGFVKARHGARMWSMEDIFSFDELLAWLKR-------GDKEGLEFALQPKFDGA 112 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G V A RGDG +GEDV++ + I IP L + IE+RGEV I+KND Sbjct: 113 SLNLLYENGALVRAITRGDGITGEDVTSNAKVIKNIP--LQIAYSGRIEIRGEVVIAKND 170 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N G +NPRNAA+G LR+L+ +R L F G G + + + Sbjct: 171 FDEINFARAQRGESQLSNPRNAAAGSLRQLDSAVTASRRLRFKPWGYG-EQNLGLETYSQ 229 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 M+ + GF + + I Y ++ + R + P+ +DGLV +V + ++LG Sbjct: 230 MMDFIYSQGFEREEFFKICRSAEQIEEAYKQLVAQRDSKPFMMDGLVVRVQSIAASEELG 289 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + P++M+++KF + +TRLLD+ Q+GR+G++TPV LEPVNI GA++ +ATLHN Sbjct: 290 YTEKFPKFMVAYKFPAIEKTTRLLDVAFQVGRSGVVTPVGVLEPVNIDGAIVKSATLHNF 349 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L ++ GD + + R+G+VIPK+ + R P P CP+ Sbjct: 350 DEIERL-----------GVQKGDFISIIRSGDVIPKITGVFKQRRDGSQTPIERPHECPV 398 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S ++ + L C A+ + L HF S+ NI+GLG ++ F+ Sbjct: 399 CGSMLLDEG---------VFVKCQNLECKARVINSLIHFASKKCLNIDGLGDAIVNQLFE 449 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 A + ADI+ L + + GF D + NL +I R +L FI S Sbjct: 450 ----AGLVAKIADIYELTAQDL------ARLEGFKDKKIANLLGAIEASRTPALHSFIAS 499 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI H+G A+ +A+ Y + + + G+ +A++ EF Sbjct: 500 LGIEHIGEVAAKKIAQIYP------------QNWRELSFGEVAAIEGFGEAMAESYAEFM 547 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 Q N ++ +L+ VSP E S I K V TGTL K R + + + GA Sbjct: 548 QV--NRQNLDEILRFVSPQAQSFETKQ-SAISGKTFVITGTLSK-GRDEFKRVLEVNGAK 603 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 VS +S+KTD ++ GD GSKL+KA++LGVK + E++ +++ Sbjct: 604 VSGSVSKKTDFVLYGDEAGSKLDKARELGVKAITEDELRQMIE 646 >gi|303232470|ref|ZP_07319159.1| DNA ligase (NAD+) [Atopobium vaginae PB189-T1-4] gi|302481435|gb|EFL44506.1| DNA ligase (NAD+) [Atopobium vaginae PB189-T1-4] Length = 836 Score = 455 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 236/778 (30%), Positives = 356/778 (45%), Gaps = 97/778 (12%) Query: 3 KRQLIPIEALSIEQ-ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 +Q P++ + A + L + ++YH YY P+I D+++DA + A+ A Sbjct: 83 SQQEPPVD--THATVAALRVPELRRLLTYHAWRYYALDDPLISDAQFDAYLQELIALEQA 140 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 P+LA P ++GG ++ TH+ S++ N+++L ++ R K Sbjct: 141 HPELA---SPTSYTQRVGGFVSRQFAACTHAKRMYSIDDAMNLDELDLWLERTCDALAKL 197 Query: 122 DDN-------------------------------SIFFTLEPKIDGTMITIRYEKGKFVY 150 ++ S FT E KIDG I + YE G+FV Sbjct: 198 AESYEDASAPVPEGTSAAAQAAADARARMRKALLSPTFTCELKIDGLGIALTYESGQFVR 257 Query: 151 AALRGDGHSGEDVSACIRAIPTIP---------RVLSLNIPEIIEVRGEVYISKNDFLAL 201 AA RGDG GEDVSA + I +P V + + +EVRGEVY+ K F+ L Sbjct: 258 AATRGDGAVGEDVSANVLTIADVPRALKPQGLAHVRNSGLNYALEVRGEVYMPKQSFVRL 317 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260 N+E A G +ANPRNAA+G LR+ NP R L F++ + + Q+E L Sbjct: 318 NEEADAQGTATFANPRNAAAGSLRQKNPEITAHRDLKTFMYAVATRDGLDVHTQHEFLAW 377 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 + GF N ++ + + RS L YDIDG+V KVD+ + Q +G AR Sbjct: 378 LASCGFSTNTKFATCHSAREVHDFCKRALEHRSELDYDIDGVVVKVDDMAAQDAMGFTAR 437 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 +PRW I++KF +Q T L DI IQ+GRTG+LTPVA EPV + G+ I ATLHN D + Sbjct: 438 APRWAIAYKFPPEQKQTLLRDICIQVGRTGVLTPVAEFEPVLVAGSTIARATLHNLDEVT 497 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ----PFSFPSFCPI 436 RD+RVGD ++V +AG+VIP+VV ++ +A + P CP Sbjct: 498 R-----------RDVRVGDTIIVHKAGDVIPEVVGPVLEGAMAEAHAARPRWQMPRVCPS 546 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S VV++ A RC + C AQ ERL H+VSR A +I+GLG++ + Sbjct: 547 CGSSVVQEDGE------VAFRCVS-IDCPAQAKERLVHWVSRKAMDIDGLGEELIIKLIG 599 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN-------------LYDSIN 543 +R AD + + + +Y I Sbjct: 600 RS----LVRDVADFYDRLTCDMIAKLDTGRYYKTSTGAHNEGDPILVGSTVATKIYAQIE 655 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + L R +F LGIRHVG +A +A Y S + + Sbjct: 656 ASKQAGLARVLFGLGIRHVGQNVAGLIAAYAGSLSQLMAAQPT----------EIASIDG 705 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQ 662 VG IA+++ +F +N + L R + + + V TGTL + Sbjct: 706 VGPKIAESVHKFLSIEQNRTVITRLAAAGVRLSEREDAAPTAQTLHGYTFVLTGTLDGMA 765 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R A + + LGA VS +S+KT +I G+N GSKL++A +LGV ++ + + +L+Q Sbjct: 766 RTDAADALRALGAKVSGSVSKKTSFVIAGENAGSKLDRAHELGVCVIGKPELDEILRQ 823 >gi|39938924|ref|NP_950690.1| NAD-dependent DNA ligase [Onion yellows phytoplasma OY-M] gi|81402396|sp|Q6YQD6|DNLJ_ONYPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|39722033|dbj|BAD04523.1| NAD-dependent DNA ligase [Onion yellows phytoplasma OY-M] Length = 671 Score = 455 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 218/710 (30%), Positives = 376/710 (52%), Gaps = 50/710 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + + ++++ SL ++++ + YY S P + D +YDAL + + +P P Sbjct: 3 NFDLIKQKIKSLVKQLTKANYQYYNLSNPDLSDQQYDALLKELINLETRYPQFKL---PY 59 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P KIGG + + H P +SL ++N+E+++ F RI + + E Sbjct: 60 SPTLKIGGFVEKKFSTIKHKTPMMSLGNVFNLEEIKAFYDRIVKKI-----PTFSLLTEL 114 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG I+++Y+KG V A RG+G GED++ + I TIP L ++ +EVRGE+Y Sbjct: 115 KIDGVAISLKYQKGILVQALTRGNGIWGEDITKNAQTIKTIPLRLKEDL--DLEVRGEIY 172 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251 +S F LN + + ++NPRNAASG LR+LN R L+ FV+G+ Sbjct: 173 LSHPAFEKLNAQRKQENKPLFSNPRNAASGTLRQLNSAIVAQRNLSIFVYGISDPYLTKP 232 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q E L + LGF N + F ++S + K+I+ L YD DG+V K++E + Sbjct: 233 T-QKETLVFLTALGFTTNPHYYCVSNFENLLSVIEKYKTIKEQLTYDTDGIVIKINELAF 291 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +G A++PRW ++KFA + + + +I Q+GRTG++TPV ++ PV + G+L++ Sbjct: 292 HSLIGATAKAPRWATAYKFATITSQSIVQNIIFQVGRTGVITPVCKIMPVMVDGSLVSKV 351 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 LHN DYI +DIR+ D V+V +AG VIP+++++I ++R +P Sbjct: 352 VLHNYDYI-----------CKKDIRIKDHVIVHKAGSVIPEILEVIKSKRTDLQKPTLMI 400 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP CQ+ + + C Q++++L HFVS++A +I LG+Q + Sbjct: 401 EKCPACQTILEKQPGE-------VDYFCLNPNCREQKIQKLIHFVSKNAMDINVLGEQTI 453 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 FF I P+D++ L++ + ++ + GFG +TN+ D+I + E Sbjct: 454 IAFFDKN----LIAKPSDLYLLKKHKHI----LQEMPGFGAKKITNILDAIEASKQKGFE 505 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 +F+LGI+H+G ++++ LAK++ + +N Q + + ++ +G IAQ+ Sbjct: 506 DVLFALGIKHIGKKVSQVLAKHFQTIENLQQATPEL----------ITQIREIGIKIAQS 555 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHKAQEY 669 I +++ N N+ V L + +N + NKK+V TGTLQK R + Q+ Sbjct: 556 IQQYFSNSCNLEEVSKLKTLGVSFQSTNPQNPTTQTIFTNKKIVLTGTLQKYSRLQIQQI 615 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + Q+GA+++ LS + + +IVG N GSKL KAQ+L + I+ E++ +++ Sbjct: 616 LEQMGAIITNSLSLQNNYLIVGINAGSKLTKAQKLQIPIIEEKELQQIIE 665 >gi|315637028|ref|ZP_07892251.1| NAD-dependent DNA ligase LigA [Arcobacter butzleri JV22] gi|315478564|gb|EFU69274.1| NAD-dependent DNA ligase LigA [Arcobacter butzleri JV22] Length = 648 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 217/707 (30%), Positives = 356/707 (50%), Gaps = 61/707 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E+ + L + YY + PI D EYD L R C A P L+ P Sbjct: 1 MTKEEYDLNIEKLIS----WANAYYVFDNPIATDEEYDKLARLCLAYEQENPKLSH---P 53 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++GG + K +H S E ++N ++L +I R + + ++ F + Sbjct: 54 NSPNKRVGGIVLDGFIKASHLSRMWSQEDVFNTQELEDWIKRASKV-----NTNLQFFCQ 108 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK DG + + YE G A RGDG GEDV+ + I +IP + +IE+RGEV Sbjct: 109 PKFDGASLNLIYENGILKQAITRGDGTVGEDVTNNAKTIFSIPLEIEE--KSLIEIRGEV 166 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 I K DF +N E G + +ANPRNAA+G LR+L+ R L F V G+G+ + + Sbjct: 167 VIKKADFEKINIERAKNGEQLFANPRNAAAGSLRQLDSNITAKRKLFFNVWGIGQ-NSLE 225 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K E+++ + LGF A+ I + Y++ SIR+ +DG+V K+D+ Sbjct: 226 HKKYSEIMEYIYSLGFERPQMQTLASNIEEIENLYHKFISIRNDFEMMLDGMVIKIDDIE 285 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG + PRW ++KF + +T+L I +Q+GRTGI+TPVA +EP I G+ ++ Sbjct: 286 TQEELGYTVKFPRWSCAYKFPAVEKTTKLKAITLQVGRTGIITPVAEVEPTLIDGSTVSR 345 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L D+++ D V++ ++G++IPK+ + R D S Sbjct: 346 ATLHNFDEIERL-----------DLKINDEVIIIKSGDIIPKITKVFFERRKGDEITISR 394 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S V+ + L C ++ + + +F S++ NI+GLG + Sbjct: 395 PTSCPTCNSEVLDEG---------TMIKCQNLDCPSRVVNSIIYFASKNCMNIDGLGNKI 445 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F + I DI++L+ + GF + + NL +I R L Sbjct: 446 VEQLFNEKK----IYDILDIYSLKYEDLQD------LEGFKEKKINNLLKAIENTRGSEL 495 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R I +LGI H+G ++ + + + N D+ SLI + G+ +A Sbjct: 496 HRVINALGIEHIGEVASKQICLEFG------------LDVINKDYDSLIALDGFGEQMAN 543 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 + +EF + N VE L+ ++P + ++ + +NK +V TGT+ K R + + + Sbjct: 544 SFIEFMRV--NKNLVEKLISIINPKVEIKKEVSENPFKNKTVVITGTMSK-SRGEIKSML 600 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 LGA VS+ +S+KTD +I G++ GSK +KA +LGVK++ EE+ L Sbjct: 601 EDLGAKVSSGVSKKTDYVIFGEDAGSKYDKAIELGVKLLTEEEMNSL 647 >gi|330813743|ref|YP_004357982.1| DNA ligase [Candidatus Pelagibacter sp. IMCC9063] gi|327486838|gb|AEA81243.1| DNA ligase [Candidatus Pelagibacter sp. IMCC9063] Length = 672 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 241/713 (33%), Positives = 399/713 (55%), Gaps = 49/713 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 SI+ +K+L + ++ +D YY+ P I D EYD +K++ Sbjct: 4 SIDDYKKKL----KLLNQYDHNYYETDSPKITDGEYDEIKKKLLEFEKKNSQYKFV---- 55 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 NK+G + KV H+ LSL ++IED+ F +I + + I EP Sbjct: 56 --SNKVGFAPSKKFSKVKHTEKMLSLGNAFSIEDMNGFYKKIKNYLNYEAGQDIILVAEP 113 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191 KIDG ++ Y+ G V RGDG GE+++ + IP IP +++ N P+++E+RGEV Sbjct: 114 KIDGISASLLYQNGILVQGLSRGDGEYGEEITENLMTIPDIPKKIIYKNFPKLMEIRGEV 173 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 YI K DF + +ANPRNAA G LR+ + L FF + +++ Sbjct: 174 YIGKKDFKNI--------ENNFANPRNAAGGSLRQKDFKKTAAIPLKFFAYSTIQSNYSH 225 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + QYE L+ ++ F N R + YN+++ +RS L YDIDG+VYK+++ + Sbjct: 226 FQSQYEFLEFLKYSNFKTNPLSRIIKNIKELEKNYNDLEQLRSGLDYDIDGIVYKINDLN 285 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQK+LG + SPRW I+HKF+ ++A T++ DI+IQ+GRTG LTPVA+++P+N+GG +++N Sbjct: 286 LQKRLGNLSNSPRWAIAHKFSAEKAFTKINDIEIQVGRTGALTPVAKVDPINVGGVMVSN 345 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED I +DIR+GD V ++RAG+VIP+VV + +++R + ++F Sbjct: 346 ATLHNEDEIIR-----------KDIRIGDTVCIQRAGDVIPQVVYVDLSKRGRKTEAYNF 394 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP + +++ N + K+ A RC CS E+LKH +S+DA NI+G GK+ Sbjct: 395 PAKCPC-GNDTIKEYNEISKKIDAVRRCPDVGYECSYMAKEKLKHLISKDALNIDGFGKK 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D F+ + I++P+DIF L + I+ + G+G++S NL SI K + +S Sbjct: 454 VVDNFWNLK----LIKVPSDIFKLDYK------AIKELEGWGELSCNNLIKSIEKSKTLS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L +FI+++GIRH+G E A+ LA Y+ S F + + + +LI + +G+ Sbjct: 504 LTKFIYAIGIRHIGQENAKILASYFKSITKFKKLF--APSLIKAELNNLIEIDGIGETQI 561 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +A+ F+ N +NI + L++ + S + S NK L+FTG K+ R +A+ Sbjct: 562 KALEIFFSNKKNIKVINDLVECLQISNFENI--TSGIFTNKTLMFTGGFSKMSRSEAKTL 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G V +S+K + ++VGD+ +K++KA+ L V+I++E+++ LL++ Sbjct: 620 AESQGGKVLGSISKKLNYLVVGDSKPTNNKVQKAKDLQVEIISEKKWHELLKR 672 >gi|32267302|ref|NP_861334.1| NAD-dependent DNA ligase LigA [Helicobacter hepaticus ATCC 51449] gi|81665265|sp|Q7VF74|DNLJ_HELHP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|32263355|gb|AAP78400.1| DNA ligase [Helicobacter hepaticus ATCC 51449] Length = 650 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 222/710 (31%), Positives = 366/710 (51%), Gaps = 61/710 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ ++ ++ L++ YY +PI D +YD+L + P L D Sbjct: 1 MTSQEYYTQVQILKKM----AYHYYVLDEPIATDEQYDSLYHQIVRFEEENPHLI---DA 53 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G S K TH SLE ++N ++L +++ RIY+ + FT Sbjct: 54 SSPTQRVGDVPLESFSKNTHLERMWSLEDVFNYDELVEWVQRIYKSY-----PQATFTCS 108 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK DG + + Y++GK V A RGDG GE V+ + I +IP L +N E IE+RGEV Sbjct: 109 PKFDGASLNLLYQEGKLVSATTRGDGVIGELVTHNAKTIQSIP--LEINYKEEIEIRGEV 166 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 I+K DF +N + ++ +ANPRNAA+G LR+L+ R L F G+G I Sbjct: 167 VIAKEDFEYINQDRLSENLSLFANPRNAAAGSLRQLDAKITAKRKLRFMPWGIGAGL-IR 225 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + YE + LGF + + I + YN + S R+ P +DG+V +D+ + Sbjct: 226 FESFYEAFNTITRLGFAPVPFLSYCESIESIQNAYNVLFSQRNNYPIMLDGMVIMLDKIA 285 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG +SPR+ ++KF + S+++L + +Q+GRTGI+TPVA L+PV I GA+I+ Sbjct: 286 SQQQLGWTIKSPRFACAYKFPAVEKSSKILSVSLQVGRTGIITPVAELKPVEIEGAMISR 345 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN I+ +DIR+GD V++ R+G+VIPK++ +V R + S Sbjct: 346 ATLHNFSEIER-----------KDIRLGDEVIIIRSGDVIPKIIKPLVALRDGTQKVISK 394 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C ++ + L+C A+ +E + HF S+ A NI+GLG++ Sbjct: 395 PTHCPVCGEELLLED---------IFIKCQNLSCEARVIESIIHFASKKALNIDGLGEKI 445 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + +++ +R DI+ L S ++ + G+ + NL +I + L Sbjct: 446 VIQLYENA----FVRNIKDIYAL------SIQQLLTLEGWQEKRANNLIYAIQNTIGVEL 495 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFI +LGI H+G ++ LA+ + + + ++ V G+ +A Sbjct: 496 WRFINALGIEHIGEGASKKLAQKFG------------LNVFELELSEILSVDGFGEEMAY 543 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++VEF N N + LL + P + E + ++ NK +V TGTL + R + + + Sbjct: 544 SLVEF--NHANKTLIAELLCIIKPKVELLEIDNNNVFFNKTIVLTGTLSQ-PRDRIIKLL 600 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 GA +S+ +S+KTD +I G+ GSKLEKAQ L + +NEE+FL + + Sbjct: 601 ESKGAKISSSVSKKTDFVIYGEKAGSKLEKAQSLNITTLNEEEFLAQINK 650 >gi|237742800|ref|ZP_04573281.1| NAD-dependent DNA ligase [Fusobacterium sp. 4_1_13] gi|229430448|gb|EEO40660.1| NAD-dependent DNA ligase [Fusobacterium sp. 4_1_13] Length = 696 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 215/711 (30%), Positives = 360/711 (50%), Gaps = 50/711 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L +++ + + YY + +I D E+D L + +++ +P + P + Sbjct: 29 EKIVKLREDLDKYRNSYYNDNISLISDYEFDMLLKELESLEEKYPQYKEI---SSPTTSV 85 Query: 79 GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 G + KV H+ P LSL +NI ++ FI RI + K+ + + LE K+DG Sbjct: 86 GASLKENKFKKVEHTHPMLSLANSYNIGEIVDFIERIKKKIPKE--QELKYCLEVKLDGL 143 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y +GK V A RGDG GEDV+ I I +I + L I +E+RGEV + Sbjct: 144 SISLTYRQGKLVRAVTRGDGLIGEDVTENILEIASIIKTLPQAI--DMEIRGEVVLPLAS 201 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+E + G + +ANPRNAASG LR+L+ R L+ + + L + ++ K E Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKDRGLDAYFYFLVEADKLGLKSHSE 261 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++ + +G T I N + R LPY+ DGLV KVDE L ++G Sbjct: 262 SIKFLESMGIKTTGIFELLETSKEIEMRINYWEKERENLPYETDGLVIKVDEIHLWDEIG 321 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +++PRW I++KF Q ST L D+ Q+GRTG LTPVA + V + G+ + A+LHN Sbjct: 322 YTSKAPRWAIAYKFPALQISTVLNDVAWQVGRTGKLTPVALFKEVELAGSKVERASLHNI 381 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 I+ +DIR+GDRV +K+A E+IP+VV I +R + + P+ CP+ Sbjct: 382 SEIQK-----------KDIRIGDRVFIKKAAEIIPQVVKAIKEDRTGNEKIIKEPTHCPV 430 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C ++ R+ K C + +++FVS+DA NI GLG + ++ F Sbjct: 431 CNHKLEREEGLVDIK-------CVNEECPGKNQAEIEYFVSKDALNIMGLGSKIVEKFID 483 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ DIF L+ ++ +ENI G+ S+ NL +SI + +N ++ I S Sbjct: 484 ----LGYIKTVVDIFDLKNHKE----DLENIDKMGERSIENLLNSIEESKNRDYDKVICS 535 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LG+ +G +++LAK + + L + +G A I+ F+ Sbjct: 536 LGMPLIGKVASKALAKASKNIDKLM----------TMSFEELTSIDGIGKKAANEIIAFF 585 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 +N ++ L ++ + + N++ K +FTGTL+ R + +E + + Sbjct: 586 TKEKNQKIIQGLKEKGLKFEIKESETNVQNINPNFAGKNFLFTGTLKHFTREQIKEEIEK 645 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722 LG + +S+ D +IVG+ GSKL+KAQ++ +KI+ EE+F+ L +++ Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696 >gi|294783065|ref|ZP_06748389.1| DNA ligase, NAD-dependent [Fusobacterium sp. 1_1_41FAA] gi|294479943|gb|EFG27720.1| DNA ligase, NAD-dependent [Fusobacterium sp. 1_1_41FAA] Length = 696 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 218/711 (30%), Positives = 365/711 (51%), Gaps = 50/711 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L++++ + D YY ++ +I D E+D L + +++ +P+ + + P + Sbjct: 29 ERIVKLKEDLDKYRDSYYNDNESLISDYEFDILLKELESLEEKYPEYKEA---SSPTESV 85 Query: 79 GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 G + KV H P LSL +NI ++ FI RI + K+ + + LE K+DG Sbjct: 86 GASLKENKFKKVEHEHPMLSLANSYNIGEVVDFIERIKKRISKE--QELKYCLEVKLDGL 143 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y +GK V A RGDG GEDV+ I I ++ + L I IE+RGE+ + Sbjct: 144 SISLTYIQGKLVRAVTRGDGFIGEDVTENILQIASVVKTLPQAI--DIEIRGEIVLPLAS 201 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYE 256 F LN E + G + +ANPRNAASG LR+L+P + L+ + + L + ++ K E Sbjct: 202 FEKLNKERLEKGEELFANPRNAASGTLRQLDPEIVKERALDAYFYFLVEADKLGLKSHSE 261 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++ + +G I + + R LPY+ DGLV KVDE +L ++G Sbjct: 262 SMKFLESMGIKTTGIFELLENSKDIEKRIDYWEKERENLPYETDGLVIKVDEINLWDEIG 321 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +++PRW I++KF Q ST L D+ Q+GRTG LTPVA LE V + G+ + A+LHN Sbjct: 322 YTSKTPRWAIAYKFPAHQVSTVLNDVTWQVGRTGKLTPVAELEEVELSGSKVKRASLHNI 381 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 I+ +DIR+GDRV +++A E+IP+VV I ER + + P CP+ Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKTIEEPINCPV 430 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C ++ R+ K C A+ +++FVSRDA NI GLG + ++ F Sbjct: 431 CNHKLEREEGLVDIK-------CVNEECPAKIQGEIEYFVSRDALNIMGLGSKIVEKFID 483 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ DI+ L+ ++ ++ENI G S+ NL +SI + +N ++ I++ Sbjct: 484 ----LGYIKTVVDIYDLKNHRE----ELENIDKMGKRSIENLLNSIEESKNREYDKVIYA 535 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +G ++ LAK + + + L + +G+I A I+ F+ Sbjct: 536 LGIPFIGKVASKVLAKASKNIDKLM----------SMTFEELTSIEGIGEIAANEIIVFF 585 Query: 617 QNPRNICAVEALLKEVSPSI----GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + + V AL ++ +N++ K +FTGTL+ R + +E + + Sbjct: 586 KKEKTQKLVAALKEKGLKFEIAESEIKVENLNPNFAGKNFLFTGTLKHFTREQIKEEIEK 645 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722 LG + +S+ D +IVG+ GSKL+KAQ++ +KI+ EE+F+ L +++ Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696 >gi|254458916|ref|ZP_05072339.1| DNA ligase, NAD-dependent [Campylobacterales bacterium GD 1] gi|207084187|gb|EDZ61476.1| DNA ligase, NAD-dependent [Campylobacterales bacterium GD 1] Length = 653 Score = 453 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 203/712 (28%), Positives = 362/712 (50%), Gaps = 62/712 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++E +K + ++++ + YY PI D YD L + Sbjct: 1 MNLEDYKKAV----EQLNLYSHHYYVLDDPITTDEVYDKLYHEVVRFEENN---KNAVLY 53 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G ++ K +H SLE I++ E L K++T+ Y+ D++I F E Sbjct: 54 SSPSQRVGDAVSSGFTKASHLSRMWSLEDIFDSEGLEKWLTKTYKL-----DSNISFYCE 108 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK DG + + YE G+ V RGDG GE ++ ++ I +IP L++ E IE+RGEV Sbjct: 109 PKFDGASLNLVYENGELVQGITRGDGSVGELITQNVKTIRSIP--LTIAHKERIEIRGEV 166 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 I K++F +N+ + G +ANPRNAA+G LR+L+ + +R L F +G+G+ S + Sbjct: 167 VIFKDEFDKINEARLKAGEAVFANPRNAAAGSLRQLDSSITASRNLVFLPYGVGEDSLEY 226 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K + + + LGF + I + Y MK+ R + P +DG+V KV+E + Sbjct: 227 -KLLSDKMAYIYELGFRKPPASSTCKGYDEIEAIYEVMKNDRDSYPMMLDGMVIKVNEIA 285 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q +G ++PR+ +++KF + T + I +Q+GR+G +TPVA++EP +I G ++ Sbjct: 286 SQIDMGYTVKNPRFSVAYKFPAVEKITTIRAIVLQVGRSGAVTPVAQVEPTDIDGVVVER 345 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I +DIR+ D+V++ R+G+VIPK++ ++ +ER P+ Sbjct: 346 ATLHNFDEIDR-----------KDIRLNDKVIILRSGDVIPKIIKVLTHERDGSEVPYER 394 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S ++ + L C A+ + + +F S+ NI+GLG + Sbjct: 395 PTLCPVCDSELLDEG---------VLLKCQNLECEARVVNSIIYFASKPCLNIDGLGNKI 445 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F + ++ D+F L + K+ + GF + NL +S+ + Sbjct: 446 VEALF----VSGLVKSVVDLFDL------TLDKLLALEGFKEKKSQNLLNSLEAAKGCDY 495 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFI SLGI HVG +++L++ + S +F ++ +G+ +A+ Sbjct: 496 WRFINSLGIEHVGEVASKTLSENFGS--SFIDATK----------EEIVACDGIGEEMAE 543 Query: 611 AIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +++EF + N + L + + P + + V + + K V TGT+ + R +E Sbjct: 544 SVLEFVRV--NRETILNLQEILKPLEPVQKAEAVENPFKGKTAVLTGTMSE-SRGAIKEM 600 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 + + GA VS +S+KTD +I G++ GSK +KA LGV+ + E++ + + Sbjct: 601 LEEFGAKVSGSVSKKTDFLIYGEDAGSKYDKAMSLGVECLTEDEMRSKISEN 652 >gi|88855225|ref|ZP_01129890.1| DNA ligase [marine actinobacterium PHSC20C1] gi|88815753|gb|EAR25610.1| DNA ligase [marine actinobacterium PHSC20C1] Length = 775 Score = 453 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 211/783 (26%), Positives = 349/783 (44%), Gaps = 102/783 (13%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + AR E+ +L I D YY+ + ++ D+EYD L +R + + P+L + + Sbjct: 26 LAAARDEVGTLSTRILELRDAYYERDEVLVDDAEYDELIQRLERLEREHPEL---QSQDS 82 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG+ V H+ LSL+ +++IE+ + ++ R ++ F E K Sbjct: 83 PTLRVGGKAAALFDPVEHAERMLSLDNVFSIEEFADWAAKVQR----DSARAVDFLCELK 138 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 IDG I +RY G V AA RGDG GEDV+ + + IP+ L+ P ++EVRGEV+ Sbjct: 139 IDGLAINLRYIDGVLVSAATRGDGRVGEDVTENVVRVDGIPQRLAGTGHPPMVEVRGEVF 198 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL----------NPTDITRYLNFFVHG 242 I F LN E +G K +ANPRNAA+G LR+ + L VHG Sbjct: 199 IPLELFRELNAEQTRIGEKVFANPRNAAAGSLRQKSEGKSDEKLSHMRRRLASLRMLVHG 258 Query: 243 LGKTS-----EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 +G + + Q ++ + G P + R ++ + R ++ + Sbjct: 259 IGAWDGARDGQDPIRSQSDVYGVLATWGLPTSTHFRVVDSADKAADFIRYFGEHRDSVEH 318 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 +IDG+V KVDE +L +LG +R+PRW I++K+ +Q +T+LLDI + IGRTG TP A Sbjct: 319 EIDGIVIKVDELALHDELGATSRAPRWAIAYKYPPEQVNTKLLDIVVGIGRTGRATPYAV 378 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 +EP + G+++ ATLHN+D +K + + +GD V++++AG+VIP+++ + Sbjct: 379 MEPALVAGSVVRQATLHNQDVVKR-----------KGVLIGDTVVLRKAGDVIPEILGPV 427 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 R F P+ CP C + + + RC +C AQ R++H S Sbjct: 428 EELRDGSEYAFVMPTLCPECGTPLRPM-----KEGDIDLRCPNARSCPAQVRGRIEHAGS 482 Query: 478 RDAFNIEGLGKQQLDFFFKSEDP---------AFSIRIPADIFTL--------------- 513 R +IE LG+ + +P DIF + Sbjct: 483 RGGLDIEVLGEVVARALAQPLEPEVPPLINEAGLFDLTVEDIFPIVIAVRDSETGEVITD 542 Query: 514 -----------------------QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + + + L ++ + + L Sbjct: 543 DDGTDRTISPFRRVRKSSGAGADPAFDPNAELFSGSADAVPSSNAIKLIANLQEAKTKPL 602 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R + SL IRHVG AR+LA Y+ S + L V VG IIA Sbjct: 603 WRLLVSLSIRHVGPVAARALADYFGSLEAIRTA----------KREELAAVDGVGQIIAD 652 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR------HEKNVSSEIENKKLVFTGTLQKIQRH 664 +++E+++ + V+ + ++ + +V TG+L R Sbjct: 653 SVIEWFEVDWHQEIVQRWAEAGVQWSTPGHPGPGAAQSKDGLLAGLTIVATGSLDGFTRE 712 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 AQE + GA ++ +S+KTD + G GSKL KA++LG+ I++ QF LL++ + Sbjct: 713 GAQEAIIAAGAKAASSVSKKTDYVAAGPGAGSKLTKAEELGITILDAAQFARLLEEGPSA 772 Query: 725 LRI 727 L Sbjct: 773 LDK 775 >gi|330444629|ref|YP_004377615.1| DNA ligase [Chlamydophila pecorum E58] gi|328807739|gb|AEB41912.1| DNA ligase, NAD-dependent [Chlamydophila pecorum E58] Length = 666 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 230/705 (32%), Positives = 368/705 (52%), Gaps = 50/705 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +++ L QE+ HD YY P+I D +YD R I P+ P P Sbjct: 8 SDSQEYYLELCQELEKHDYQYYVLHAPLISDYDYDMKMRELQLIEKQHPEW---RVPWSP 64 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G + L V H P LS+ ++ E+L +F +R+ + +T+E KI Sbjct: 65 TLRLGDRPSGELEIVDHKYPMLSIANGYSEEELEEFFSRVEKSLGHVPY----YTIELKI 120 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG + IRYE V A RG+G GED++ IR I +P L PE +EVRGEV+ Sbjct: 121 DGIAVAIRYEDRILVQAMSRGNGKQGEDITTNIRTIRALPLRLPEESPEFLEVRGEVFFK 180 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKG 253 + F +N + A+ + +ANPRNAA G L+ L+ R L ++ + +E + Sbjct: 181 RAVFDEINAKQRALKKPEFANPRNAAGGTLKLLSAEKVAERKLEISIYSV--LAEELSDS 238 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 + L+ R G V R + + + E+K +RS LP +IDG+V KVD Q+ Sbjct: 239 HCDSLECCRQWGLSVQGMPRLCRSKEEVFVFLEEIKQLRSQLPMEIDGVVIKVDSIKDQQ 298 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG + RW +++K+A +QA T L DI +Q+GRTG+LTPVA+L PV + G+LI+ A+L Sbjct: 299 SLGSTGKHYRWALAYKYAPEQAETVLEDILVQVGRTGVLTPVAKLRPVFLSGSLISRASL 358 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 +NE+ I+ +DIR+GD V++++ GEVIPKVV +++ +R D+Q + P Sbjct: 359 YNEEEIRR-----------KDIRIGDTVVLEKGGEVIPKVVGVVLGKRPEDSQSWQMPEH 407 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CPIC VVR+ N RC CS +E+++ F R A +IE LG++ ++ Sbjct: 408 CPICHGDVVREGNK------VCVRCMNP-TCSGGTIEKIRFFAGRSALDIEYLGEKVINK 460 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F + +DIF+L +R + GF + SVTN+ SI K +N+ L+RF Sbjct: 461 LFD----MGLLHSCSDIFSLTKRDL------LQVPGFREKSVTNILKSIEKAKNVFLDRF 510 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + +LGI +VG +A SLA+++ S + + D +A +I Sbjct: 511 LVALGIPYVGIGVASSLAEHFGSLERVISASEEELLEIEGIG----------DKVAVSIK 560 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 E+++NP+++ +E +L H SS + K V TG I R + + Sbjct: 561 EYFENPKHLEEIEKMLDFGVKVAPSH--KSSSICQGKTFVITGAFAGITRSDIERTIRNC 618 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G VS+ +S++TD ++VG++PGSKL+KAQ+LG+ +++++ +L Sbjct: 619 GGKVSSSVSKQTDYLVVGEDPGSKLKKAQELGIPLLDQDSLQKIL 663 >gi|254453419|ref|ZP_05066856.1| DNA ligase, NAD-dependent [Octadecabacter antarcticus 238] gi|198267825|gb|EDY92095.1| DNA ligase, NAD-dependent [Octadecabacter antarcticus 238] Length = 661 Score = 452 bits (1162), Expect = e-124, Method: Composition-based stats. Identities = 277/667 (41%), Positives = 394/667 (59%), Gaps = 54/667 (8%) Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL + +D+ +F + +F + ++ FT EPKIDG +++RYE GK V AA R Sbjct: 1 MLSLGNAFTDDDVSEFDKSVRKFLGL-ETGALAFTAEPKIDGLSLSLRYEFGKLVQAATR 59 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG GE+V+A R I +P++L P+I+EVRGEVY+S DF ALN G K +A Sbjct: 60 GDGAVGENVTANARTIHDVPQLLDDA-PDILEVRGEVYMSHADFEALNARQSKAGAKTFA 118 Query: 215 NPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273 NPRNAA+G LR+L+ + +R L FF + G+ S A Q + +++ LGF N + Sbjct: 119 NPRNAAAGSLRQLDVSVTKSRPLKFFAYAWGEVSAPLADTQSGAIARLKTLGFQTNPLTQ 178 Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333 ++++Y +++S R+TL YDIDG+VYKVDE +LQ +LG R+ +PRW I+HKF + Sbjct: 179 ICTGPSDMIAHYRDIESQRATLGYDIDGVVYKVDELALQARLGFRSTTPRWAIAHKFPAE 238 Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393 A T L IDIQ+GRTG L+PVARL PV +GG +++NATLHNEDYI G G +RGG+ Sbjct: 239 LAWTTLDAIDIQVGRTGALSPVARLSPVTVGGVVVSNATLHNEDYIAGRGNKGDDIRGGK 298 Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453 DIRVGD V + RAG+VIPKV D+ + +R +A PF FP+ CP C S VR+ Sbjct: 299 DIRVGDWVQIYRAGDVIPKVADVDLTKRPVEATPFDFPTTCPKCGSDAVREEG------D 352 Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513 RCTGGL C AQ +E+LKHFVSR AF+I+GLG +Q++ F+ D +I+ PADIFTL Sbjct: 353 VVRRCTGGLICPAQAVEKLKHFVSRAAFDIDGLGAKQVEAFYN--DDQLAIKEPADIFTL 410 Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 Q R S TK+ N G+GD SV L+ +I+++R ISL R IF+LGIRHVG A+ LA++ Sbjct: 411 QARDLDSFTKLANRDGWGDTSVKKLWQAIDEKREISLARLIFALGIRHVGEVTAQDLARH 470 Query: 574 YLSYQNFAQEIN----NIIAHNNDDWLS-------------------------------- 597 Y +++ A+ + IAH D Sbjct: 471 YGTWEVLAENVKLGRPAAIAHRAADEAEADERFIADRDGRRPRVSEARKLAIANAGLSRT 530 Query: 598 -------LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650 LI +G +A + + N A+EAL++++ I + +S + K Sbjct: 531 ATKAWAFLIDADGIGATVALSFSDALSNAEESKAIEALIQQLDTIIAPQTQASNSPVAGK 590 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +VFTGTL+K+ R +A+ LGA VS +S KTD++I G GSK +KA G++ ++ Sbjct: 591 TVVFTGTLEKMTRAEAKARAESLGAKVSGSVSAKTDLLIAGLGAGSKAKKAADFGIETLS 650 Query: 711 EEQFLFL 717 E+ +L L Sbjct: 651 EDGWLAL 657 >gi|302670775|ref|YP_003830735.1| NAD-dependent DNA ligase LigA1 [Butyrivibrio proteoclasticus B316] gi|302395248|gb|ADL34153.1| NAD-dependent DNA ligase LigA1 [Butyrivibrio proteoclasticus B316] Length = 675 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 202/725 (27%), Positives = 339/725 (46%), Gaps = 64/725 (8%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + ++ E+ R +L EI +H D YY +P I D EYD L R + +P+L Sbjct: 1 MSQIT-EEIRNNYDALVSEIKHHMDLYYNQDEPEISDYEYDQLMIRLKKMESEYPELV-- 57 Query: 69 EDPNGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + P +GG + K+TH++P LS+E ++ E + +++T+++ Sbjct: 58 -SNDSPSQIVGGVAKREAGVKITHNVPMLSIEDVFTTEAVSEWVTKVH-----ALHPGAL 111 Query: 128 FTLEPKIDGTMITIRYEKG------KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 F+ E KIDG +++RY K A RGDG GEDV+A IP + RV+ L Sbjct: 112 FSAEIKIDGLSMSLRYRKSPEDDKLHLELAETRGDGLIGEDVTANALMIPDVKRVIDLPY 171 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240 + E+RGEVY+S +F N+E G+K ANPRN A+G LR+L+PT R L FV Sbjct: 172 DYL-ELRGEVYMSHENFEKFNEEQEKSGKKIAANPRNLAAGTLRQLDPTITRDRGLRMFV 230 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 + + + + L+ + G PV +Q + +++ E ++R L YD+D Sbjct: 231 FNIQDGPQELMESHCKGLEILANAGVPVVFH-KQCSDTQEVIAAITEFGNMRENLEYDLD 289 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G V KVD + + ++ I++K+ ++ + +I + +GRTG LT Sbjct: 290 GAVIKVDHTAWRDDFPAGSKYSSGHIAYKYPPEERVVVMDEIIVDVGRTGKLTFTGSFHD 349 Query: 361 V------NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 + G ++ ATLHN+DYI + I +G + ++GE+IPK+ Sbjct: 350 RETGKPARLCGTSVSRATLHNQDYINEMQ-----------IGIGGEYKLFKSGEIIPKLN 398 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 + + P CP+C S +VR+ + A RC C AQ + + Sbjct: 399 GCVKAP----EIVYKAPEHCPVCGSLLVREED------TADIRCINP-TCPAQVTRTIAY 447 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 F SRDA NI GLG +D ++ ADI+TL R + K + Sbjct: 448 FTSRDAMNIMGLGDTLVDALVSE----GYLKTYADIYTLGRHRDELIEKGII---GKVKN 500 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 L I K + R + L IR+VG AR + K++ ++++ Sbjct: 501 TDKLLGEIEKSKENDPVRLLTGLAIRNVGKSTAREIMKHF----------DDLMELTKVT 550 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654 +++P +G+ A + EF+ + N+ +E + + S ++ +V Sbjct: 551 REGFLQIPDIGETTANDLYEFFHDEHNLQILEQMNSLGLNMKVVESNDSSDKLSGMTIVV 610 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TGTL + R +A+E + + G S +S+KT +++ G+ GSKL KA LG+K++NE +F Sbjct: 611 TGTLPTLGRKEAEELIVKNGGKASGSVSKKTSLVLAGEAAGSKLTKANDLGIKVINEAEF 670 Query: 715 LFLLQ 719 L +++ Sbjct: 671 LEMIK 675 >gi|78777542|ref|YP_393857.1| NAD-dependent DNA ligase LigA [Sulfurimonas denitrificans DSM 1251] gi|123768611|sp|Q30QV9|DNLJ_SULDN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|78498082|gb|ABB44622.1| DNA ligase (NAD+) [Sulfurimonas denitrificans DSM 1251] Length = 652 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 199/705 (28%), Positives = 354/705 (50%), Gaps = 58/705 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +++ + ++ + YY I D YD L + + N P + Sbjct: 3 KEQYIKAVELLNLYSYHYYVLDDAITTDEVYDKLYHEVLEYEESHKEDILK---NSPTQR 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++ K H SLE +++ + L+K++ + Y+ D++I F EPK DG Sbjct: 60 VGDTVSEGFSKAPHLSRMWSLEDVFDSDGLQKWLIKTYKL-----DSNISFYCEPKYDGA 114 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G+ A RGDG GE ++ ++ I ++P LS+ E IE+RGEV I K++ Sbjct: 115 SLNLIYENGELSQAITRGDGEVGELITQNVKTIRSVP--LSIEHKEKIEIRGEVVIFKDE 172 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N + G +ANPRNAA+G LR+L+ + +R L F +G+G + + K + Sbjct: 173 FEKINQTRLKDGEALFANPRNAAAGSLRQLDSSITASRNLVFLPYGVG-ENFLEHKLLSQ 231 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++ + LGF F+ I + Y EM R + P +DG+V KVDE + Q +G Sbjct: 232 KMEYIYSLGFKKPPFCATCKDFNEIEAVYQEMSRNRDSYPMMLDGMVVKVDEIAAQIDMG 291 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++PR+ +++KF + T + +I +Q+GRTG +TPVA +EP NI G ++ ATLHN Sbjct: 292 YTVKNPRFSVAYKFPAVEKITTIKEIILQVGRTGAVTPVAIVEPTNIDGVVVERATLHNF 351 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ +DIR+ D V++ R+G+VIPK++ ++ +ER + P+ CP+ Sbjct: 352 DEIQR-----------KDIRINDHVIILRSGDVIPKIIKVLTHERDGSEVEYKRPTICPV 400 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C+S ++ + L C A+ + + +F S+ NI+GLG + ++ F Sbjct: 401 CESELLDEG---------VLLKCQNLTCEARVINSIIYFASKPCLNIDGLGVKIVEALFN 451 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 S ++ D+F + K+ + GF + NL D++ + RF+ S Sbjct: 452 S----GLVKSVVDLFD------LTLEKLLTLEGFKEKKAQNLLDALGSAKGCEYWRFVNS 501 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI H+G +++L+ + S F ++ VG+ +A++++EF Sbjct: 502 LGIEHIGEVASKTLSAKFGS--GFIDATK----------DEIVACDGVGEEMAESLLEFI 549 Query: 617 QNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + N + L + P + ++ + + K +V TG++ + R +E + LGA Sbjct: 550 RV--NRETILKLQNILKPLEPLQRQEAKENPFKGKSVVLTGSMSE-SRDMIKEMLESLGA 606 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 V + +S+KTD +I G++ GSK +KA LGV+ +NE++ ++Q Sbjct: 607 KVVSSVSKKTDFVIYGEDAGSKYDKAMDLGVECLNEDEMRSKIEQ 651 >gi|185178794|ref|ZP_02554752.2| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024241|ref|ZP_02569990.2| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518556|ref|ZP_03004016.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|209554205|ref|YP_002284543.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225551582|ref|ZP_03772528.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|254781448|sp|B5ZAV3|DNLJ_UREU1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|184209414|gb|EDU06457.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018900|gb|EDU56940.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997873|gb|EDU66970.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|209541706|gb|ACI59935.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379397|gb|EEH01762.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 673 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 215/712 (30%), Positives = 367/712 (51%), Gaps = 53/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ + +++ L+Q++ + YY P + D YD R + +A+P + N Sbjct: 1 MDRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQAMRELIELENAYPQFKTN---NS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG ++ KV H P LSL ++ DLRKF + +EPK Sbjct: 58 PSVRVGGFVSEKFNKVKHKRPMLSLSNAFDANDLRKFDQDNQNASVDLKG----YVVEPK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192 IDG I+I Y+ K A RGDG +GEDV++ I I IP + + IEVRGEVY Sbjct: 114 IDGLSISIIYKNAKLHQAITRGDGVNGEDVTSNILTIKDIPHYIDQKYKDYEIEVRGEVY 173 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251 ++ +DF +ND + + +ANPRNAA+G LR L+ + R L+ F++ L E+ Sbjct: 174 MAFHDFYEMNDNLEESDK-KFANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQELGI 232 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 K YE +Q ++ F V++ + + +T +++ + +R+ L Y IDG+V K++ + Sbjct: 233 KTHYESIQFLKDNKFKVSDLIVKVDTIDEVINQIDRYTKVRNDLSYMIDGIVIKINNLEV 292 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 ++G ++ P+W I++KF S++LL+I +GRTG ++ VA+++P+ + G+++ A Sbjct: 293 YDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSIVEYA 352 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D+IK +DIR+ D + + +AG+VIP V + +++R ++ P+ Sbjct: 353 TLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPYESI 401 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP CQS +VR+ + RC C +E++ +FVSR+ NIEG+ + Sbjct: 402 TNCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSDAII 455 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F+ A I+ AD++ LQ+ ++ I D S +NL +SIN + SLE Sbjct: 456 NKFYD----ANLIKNVADLYYLQKHKEFILASDFKI---KDKSFSNLINSINNSKTRSLE 508 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + GIRHVG +A+ LAK + + ++ L V G+ A + Sbjct: 509 FLLTAFGIRHVGPNLAKKLAKQFKTMTTLMHA----------NFGELTNVDACGEKAALS 558 Query: 612 IVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++ ++ + N+ V L + I N+ E +NK V TG+ I R + Sbjct: 559 LINWFNDDHNVSLVNQLQQVGVNMEYIDDFIYDDNINIIDEYKNKTFVITGSFS-ISRDE 617 Query: 666 AQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + + + A V +S+KTD ++ G G+KLEKA+ LGVKI+ E +F Sbjct: 618 IKTILEKYYHAKVKNSVSKKTDYVLAGIEAGTKLEKAKLLGVKII-ENEFWK 668 >gi|310778043|ref|YP_003966376.1| DNA ligase, NAD-dependent [Ilyobacter polytropus DSM 2926] gi|309747366|gb|ADO82028.1| DNA ligase, NAD-dependent [Ilyobacter polytropus DSM 2926] Length = 677 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 216/718 (30%), Positives = 362/718 (50%), Gaps = 52/718 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++ + ++++I ++ YY ++ ++ D EYD L + + I P++ D Sbjct: 1 MENILEKATKIKEKIDKYNYYYYVKNESLVSDIEYDKLLKELEEIEKKHPEIK---DELS 57 Query: 74 PLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS----IFF 128 P ++G ++ KV H P LSL +NI+D+ F RI + K ++ + Sbjct: 58 PTRQVGSSLSDTKFQKVEHKKPMLSLSNTYNIKDVEDFHQRIDKILGKLKEDESKKITDY 117 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 LE K+DG I++ Y+ GK V RGDG GEDV+ I I +IP+ L NI IE R Sbjct: 118 ALELKLDGVSISVHYKNGKLVKGVTRGDGTVGEDVTENIMEIKSIPKYLKENI--DIEAR 175 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247 GE+ + ++F LN G +ANPRNAASG LR+L+ R L+ + + L Sbjct: 176 GEIVLPLSEFKKLNQIRYDKGEDLFANPRNAASGTLRQLDSKIVAERNLDCYFYFLADCD 235 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 ++ + E ++ + +G ++ + ++ R L Y+ DGLV KV+ Sbjct: 236 KLGIEKHSESMEFLEKVGLKTTGVCDLCSSIEELEDRIRYWENNRGVLDYETDGLVIKVN 295 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 L +LG +SPRW IS+KF KQ +T L +I Q+GRTG +TPVA LE V + G+ Sbjct: 296 MVELWDKLGATTKSPRWAISYKFPAKQVTTTLKNITWQVGRTGKVTPVAELEEVEVSGSK 355 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + A+LHN D I +D+++GDRV +++A E+IP+VV ++ R + + Sbjct: 356 VKRASLHNFDEIIR-----------KDVKIGDRVFIEKAAEIIPQVVKVVKEARTGEEKE 404 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 PS CP C + + R+ + C A+ ++++FVSRDA NI GLG Sbjct: 405 IMPPSVCPECGTELGREEGLIDLR-------CPNEKCPAKVRGQIEYFVSRDAMNINGLG 457 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 K+ ++ F + I+ +DI+ L + +++++ G SV NL SI + Sbjct: 458 KKIVEKFIE----IGKIKDVSDIYDLHLYKD----ELKSLEKMGAKSVENLLKSIEDSKK 509 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 + ++SLGI HVG +A LAK + AQ L+ + VG Sbjct: 510 REYPKSLYSLGIPHVGKFLASLLAKESKNIDKLAQ----------MSIEDLLEIDGVGKK 559 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSEIENKKLVFTGTLQKIQR 663 +A+++ ++N + + +E L + ++ + E ++K + TG L+ R Sbjct: 560 VAESVYGVFRNKKFLERLEKLKNYGVNFKIKEVEDTAEFFNEEFKDKTFLATGKLKHFTR 619 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQ 720 +EY+ LG + +S+K D +IVG+ GSKL+KA++L VKI+ E +FL + ++ Sbjct: 620 EGIKEYIESLGGKNLSGVSKKLDYLIVGEKAGSKLKKAEELKTVKILTESEFLEMTEK 677 >gi|186701986|ref|ZP_02554435.2| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|186700761|gb|EDU19043.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 673 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 215/712 (30%), Positives = 367/712 (51%), Gaps = 53/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ + ++ L+Q++ + YY P + D YD R + + +P + N Sbjct: 1 MDKIKAKIDELKQKLDQWNYEYYVLDDPSVPDHVYDQTMRELIELENNYPQFKTN---NS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+GG ++ KV H P LSL +N +DL+KF + +EPK Sbjct: 58 PSVKVGGFVSEKFNKVKHKRPMLSLSNAFNDDDLKKFDQDNQNASVDLKG----YVVEPK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192 IDG I+I Y+ K A RGDG +GEDV++ I I IP + + IEVRGEVY Sbjct: 114 IDGLSISIIYKNAKLHQAITRGDGINGEDVTSNILTIKDIPHYIDQKYKDYEIEVRGEVY 173 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251 ++ +DF +ND + + +ANPRNAA+G LR L+ + R L+ F++ L E+ Sbjct: 174 MAFHDFYEMNDNLEESDK-KFANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQELGI 232 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 K YE +Q +R F V++ + + +T + +++ + +R L Y IDG+V K++ + Sbjct: 233 KTHYESIQFLRDNKFKVSDLIVKVDTINEVINQIDCYTKVRDKLSYMIDGIVIKINNLEV 292 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 ++G ++ P+W I++KF S++LL+I +GRTG ++ VA+++P+ + G+++ A Sbjct: 293 YDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSMVEYA 352 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D+IK +DIR+ D + + +AG+VIP V + +++R ++ P+ Sbjct: 353 TLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPYEPI 401 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP CQS +VR+ + RC C +E++ +FVSR+ NIEG+ + Sbjct: 402 INCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSDAII 455 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F+ A I+ AD++ LQ+ ++ T I + S +NL +SIN + SLE Sbjct: 456 NKFYD----ANLIKNIADLYYLQKHKEFILTSDFKI---KEKSFSNLINSINNSKKCSLE 508 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + GIRHVG +A+ +AK + + + ++ L V G+ A + Sbjct: 509 FLLTAFGIRHVGPNLAKKIAKQFKTMTALMRA----------NFDELTNVDACGEKAASS 558 Query: 612 IVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++ ++ + N+ V L + I N+ E +NK V TG+ I R + Sbjct: 559 LINWFNDEHNVSLVNQLQQVGVNMEYIDDFIYDDNINIIDEYKNKTFVITGSFS-ISRDE 617 Query: 666 AQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + + + A V +S+KTD ++ G G+KLEKA+ LGVKI+ E +F Sbjct: 618 IKTILEKYYHAKVKNSVSKKTDYVLAGTEAGTKLEKAKLLGVKII-ENEFWK 668 >gi|315638276|ref|ZP_07893457.1| NAD-dependent DNA ligase LigA [Campylobacter upsaliensis JV21] gi|315481623|gb|EFU72246.1| NAD-dependent DNA ligase LigA [Campylobacter upsaliensis JV21] Length = 644 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 222/699 (31%), Positives = 352/699 (50%), Gaps = 60/699 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E + + YY+ +P+ D EYD L R A P L P+ P KI Sbjct: 3 EYLKKVELANLWMRAYYEEDEPLASDEEYDRLIREIKAFEKENPSLI---SPDSPTQKIA 59 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + K H S+E +++ E+LR + R F +EPK DG + Sbjct: 60 PTIQSKFKKSRHLSKMWSMEDVFDEEELRAWAKRAR--------CEDGFFIEPKFDGASL 111 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 + Y+KG+ V AA RGDG GEDV+ ++ I IP++ +N IE+RGEV I K DF Sbjct: 112 NLLYQKGRLVSAATRGDGEIGEDVTLNVKEIANIPQI--INYEGEIEIRGEVVILKEDFE 169 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN++ +ANPRNAASG LR+L+ R L F+ G+GK + E++ Sbjct: 170 RLNEKRAKENLSLFANPRNAASGSLRQLDTQITKERNLKFYPWGVGK-HTLSFAKHSELM 228 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 +R LGF + VR ++++Y E+ S+R P +DG+V +VD+ +L K+LG Sbjct: 229 CFVRELGFLKDEFVRVCKNLDEVLTHYKELLSLRDLKPMMMDGMVVRVDDIALCKELGYT 288 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 + P++M + KF + STRL+ + +Q+GR+G++TPVA LEPVN+ G ++ +A+LHN D Sbjct: 289 IKYPKFMAAFKFPALEKSTRLVGVSLQVGRSGVITPVAVLEPVNLDGVVVKSASLHNFDE 348 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I+ L ++R+ D V V R+G+VIPK+ + + R +A P CP+C+ Sbjct: 349 IERL-----------NLRLNDFVSVIRSGDVIPKITKVFKDRRGENALKIERPKLCPVCE 397 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S ++ + A L C A+ + + +FVS+ NI+GLG+ ++ ++ + Sbjct: 398 SELLDEG---------ALIKCQNLDCKARLVNSIIYFVSKKCLNIDGLGESIVELLYEKQ 448 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I IF L E + GF + +T L ++I + L RFI +LG Sbjct: 449 K----ITSIESIFRL------KFQDFEGLEGFKEKKITKLLNAIESAKICPLYRFITALG 498 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I H+G A+ LA + + + G+ +A ++VEF + Sbjct: 499 IEHIGEVAAKKLALSF------------DKEWYQKSFEEYKNLEGFGEQMALSLVEFTRV 546 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 N +EA K ++ + E + S K V TGTL + R + + + +LG VS Sbjct: 547 --NQARIEAFYKLLNLENEKQEISTQSPFYEKTFVITGTLSR-PRDEFKALIERLGGKVS 603 Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KTD ++ G+ GSKLEKA++LGVK ++E QF L Sbjct: 604 SSVSKKTDFVLFGEEAGSKLEKARELGVKCIDEIQFNAL 642 >gi|15611625|ref|NP_223276.1| NAD-dependent DNA ligase LigA [Helicobacter pylori J99] gi|7674020|sp|Q9ZLM1|DNLJ_HELPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|4155109|gb|AAD06141.1| DNA LIGASE [Helicobacter pylori J99] Length = 656 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 218/709 (30%), Positives = 347/709 (48%), Gaps = 61/709 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE + ++ YY +PI+ D+ YD L + A P+ ++ N P Sbjct: 3 KSQKEYLERIEYLNTLSHHYYNLDEPIVSDAVYDELYQELKAYEEENPNRIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G K H + SL+ ++N +LR ++ RI + + + F PK+D Sbjct: 60 QKVGATATNEFSKNPHLMRMWSLDDVFNQNELRAWLQRILKVY-----PNASFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+ GK + A RG+G GE V+ + I IP + IE+RGEV ISK Sbjct: 115 GVSLNLLYQHGKLISATTRGNGLEGELVTNNAKHIANIPHS--IAYNGEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRNAASG LR+L+ R L F G+GK + Sbjct: 173 EDFDALNKERLNANEPLFANPRNAASGSLRQLDSNITKKRKLQFIPWGVGK-HSLHFLRF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R +DG+V VDE +QK+ Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVDELDIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEPV I GA++ ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMVNRATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + + R Q P C Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQQKIMRPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LAKY L+ ++ + + G +A ++V Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMAHSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N + +L + ++P ++ SS +K +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIRSLFELLNPKSSDTAEEKQKSSSVFSDKTIVLTGTLSK-PRQEYAQMLE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA +++ +S KTD +I G+N GSKL AQ+ GV ++NEE+ L L++ Sbjct: 606 NLGAKIASSVSAKTDFLIAGENAGSKLALAQKHGVSVLNEEELLKRLKE 654 >gi|269123713|ref|YP_003306290.1| DNA ligase, NAD-dependent [Streptobacillus moniliformis DSM 12112] gi|268315039|gb|ACZ01413.1| DNA ligase, NAD-dependent [Streptobacillus moniliformis DSM 12112] Length = 675 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 213/692 (30%), Positives = 367/692 (53%), Gaps = 47/692 (6%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 I ++ YY + +I D EYDAL ++ + + FP+L N P IGG+ + Sbjct: 23 IEIYNHHYYNLDESLITDREYDALLKKIELLEKEFPELKLK---NSPTEIIGGKSSDKFK 79 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 KV H LSL ++++DL+ F R+ + N++ + LE K+DG I++ YEKGK Sbjct: 80 KVKHKKAMLSLANTYSMDDLKAFDQRVKKEVG----NNVEYVLELKLDGLSISLIYEKGK 135 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 + A RGDG GEDV+ + I TIP++L I +EVRGE+ + +F +N E Sbjct: 136 LIQAVTRGDGSVGEDVTENVIQISTIPKILKDEI--DLEVRGEIVLPLKEFERINREREE 193 Query: 208 VGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF 266 G +ANPRN A+G +R+L+ + R L+ +++ L + + Q E ++ ++ LGF Sbjct: 194 NGETIFANPRNVAAGTIRQLDYSIVKDRNLDCYLYYLVDSEKYGLNTQLESIEYIQKLGF 253 Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 + + + + R L Y+ DGLV KV+E+ L LG A+SPRW + Sbjct: 254 KTTGIFTKCSKIEDLEKEIEYWDNNRKKLEYETDGLVIKVNEYYLHNLLGYTAKSPRWAM 313 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386 ++KF +Q T++LDI Q+GRTG++TPVA LEPV+I G+++ A+LHN D IK L Sbjct: 314 AYKFKAEQKETKMLDISFQVGRTGVITPVAELEPVHISGSVVRRASLHNIDEIKRL---- 369 Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446 +++GD V+V++A E+IP+VV +++ +R + + CP C + + ++ Sbjct: 370 -------GLKIGDIVIVEKAAEIIPQVVKVLLEKRSGNEKEIEIIDKCPSCNNTIFKEEG 422 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506 K C + ++++FVSRDA NI+G G + +D F IR Sbjct: 423 QVALK-------CKNPNCVEKLKRKIEYFVSRDALNIQGFGNKLVDKFVD----LGYIRS 471 Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 DIF L+ ++ ++ N+ G S+ L D+I+K ++I E+ +SLGI +VG Sbjct: 472 IIDIFKLKNHKE----ELINLDKMGTKSIEKLLDNIDKAKDIGFEKLFYSLGIEYVGKTT 527 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 ++ + ++ S +N L+ + +G+ ++ +I ++++ NI + Sbjct: 528 SKLVVSHFGSIENIINA----------SLEELVLIEGIGEKVSLSIYNYFKDNENISLIN 577 Query: 627 ALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 + S + + ++ I NKK + TG R + ++ + + G + + +++ Sbjct: 578 EIKNIGFDLSFEKEQILNNNFITNKKFLATGKFVNYSREEIKKVIEKNGGIYLSSVNKNL 637 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 D +I+G+ GSKLEKA++LGV+I+ EE+FL L Sbjct: 638 DYLIIGEKAGSKLEKAEKLGVRIITEEEFLKL 669 >gi|171920195|ref|ZP_02931577.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902576|gb|EDT48865.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 673 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 216/712 (30%), Positives = 368/712 (51%), Gaps = 53/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ + ++ L+Q++ + YY P + D YD R + + +P + N Sbjct: 1 MDKIKAKIDELKQKLDQWNYEYYVLDDPSVPDHVYDQTMRELIELENNYPQFKTN---NS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+GG ++ KV H P LSL +N +DL+KF + +EPK Sbjct: 58 PSVKVGGFVSEKFNKVKHKRPMLSLSNAFNDDDLKKFDQDNQNASVDLKG----YVVEPK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192 IDG I+I Y+ K A RGDG +GEDV++ I I IP + + IEVRGEVY Sbjct: 114 IDGLSISIIYKNAKLHQAITRGDGINGEDVTSNILTIKDIPHYIDQKYKDYEIEVRGEVY 173 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251 ++ +DF +ND + + +ANPRNAA+G LR L+ + R L+ F++ L E+ Sbjct: 174 MAFHDFYEMNDNLEESDK-KFANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQELGI 232 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 K YE +Q +R F V++ + + +T + +++ + +R L Y IDG+V K++ + Sbjct: 233 KTHYESIQFLRDNKFKVSDLIVKVDTINEVINQIDCYTKVRDKLSYMIDGIVIKINNLEV 292 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 ++G ++ P+W I++KF S++LL+I +GRTG ++ VA+++P+ + G+++ A Sbjct: 293 YDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSMVEYA 352 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D+IK +DIR+ D + + +AG+VIP V + +++R ++ P+ Sbjct: 353 TLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPYEPI 401 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP CQS +VR+ + RC C +E++ +FVSR+ NIEG+ + Sbjct: 402 INCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSDAII 455 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F+ A I+ AD++ LQ+ ++ T I + S +NL +SIN + SLE Sbjct: 456 NKFYD----ANLIKNIADLYYLQKHKEFILTSDFKI---KEKSFSNLINSINNSKKCSLE 508 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + GIRHVG +A+ +AK + + + ++ L V G+ A + Sbjct: 509 FLLTAFGIRHVGPNLAKKIAKQFKTMTALMRA----------NFDELTNVDACGEKAASS 558 Query: 612 IVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++ ++ + N+ V L + I N+ E +NK V TG+ I R + Sbjct: 559 LINWFNDEHNVSLVNQLQQVGVNMEYIDDFIYDDNINIIDEYKNKTFVITGSFS-ISRDE 617 Query: 666 AQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + + + A V +S+KTD ++VG G+KLEKA+ LGVKI+ E +F Sbjct: 618 IKTILEKYYHAKVKNSVSKKTDYVLVGTEAGTKLEKAKLLGVKII-ENEFWK 668 >gi|225550545|ref|ZP_03771494.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225379699|gb|EEH02061.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 673 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 215/712 (30%), Positives = 369/712 (51%), Gaps = 53/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ + +++ L+Q++ + YY P + D YD R + +A+P + N Sbjct: 1 MDRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQAMRELIELENAYPQFKTN---NS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG ++ KV H P LSL ++ DLRKF + +EPK Sbjct: 58 PSVRVGGFVSEKFNKVKHKRPMLSLSNAFDANDLRKFDQDNQNASVDLKG----YVVEPK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192 IDG I+I Y+ K A RGDG +GEDV++ I I IP + + IEVRGEVY Sbjct: 114 IDGLSISIIYKNAKLHQAITRGDGVNGEDVTSNILTIKDIPHYIDQKYKDYEIEVRGEVY 173 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251 ++ +DF +ND + + +ANPRNAA+G LR L+ + R L+ F++ L E+ Sbjct: 174 MAFHDFYEMNDNLEESDK-KFANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQELGI 232 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 K YE +Q ++ F V++ + + +T +++ + +R+ L Y IDG+V K++ + Sbjct: 233 KTHYESIQFLKDNKFKVSDLIVKVDTIDEVINQIDRYTKVRNDLSYMIDGIVIKINNLEV 292 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 ++G ++ P+W I++KF S++LL+I +GRTG ++ VA+++P+ + G+++ A Sbjct: 293 YDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSIVEYA 352 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D+IK +DIR+ D + + +AG+VIP V + +++R ++ P+ Sbjct: 353 TLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPYESI 401 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP CQS +VR+ + RC C +E++ +FVSR+ NIEG+ + Sbjct: 402 TNCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSDAII 455 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F+ A I+ AD++ LQ+ ++ I D S +NL +SIN + SLE Sbjct: 456 NKFYD----ANLIKNVADLYYLQKHKEFILASDFKI---KDKSFSNLINSINNSKTRSLE 508 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + GIRHVG +A+ LAK + + ++ L V G+ A + Sbjct: 509 FLLTAFGIRHVGPNLAKKLAKQFKTMTTLMHA----------NFGELTNVDACGEKAALS 558 Query: 612 IVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++ ++ + N+ V L ++ + I N+ E +NK V TG+ I R + Sbjct: 559 LINWFNDDHNVSLVNQLQQVGLNMEYIDDFIYDDNINIIDEYKNKTFVITGSFS-ISRDE 617 Query: 666 AQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + + + A V +S+KTD ++ G G+KLEKA+ LGVKI+ E +F Sbjct: 618 IKTILEKYYHAKVKNSVSKKTDYVLAGIEAGTKLEKAKLLGVKII-ENEFWK 668 >gi|239994967|ref|ZP_04715491.1| DNA ligase, NAD-dependent [Alteromonas macleodii ATCC 27126] Length = 593 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 227/632 (35%), Positives = 349/632 (55%), Gaps = 45/632 (7%) Query: 98 LEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157 ++ ++ E L F R+ KD ++ F+ EPK+DG ++I YE G+ V AA RGDG Sbjct: 1 MDNAFDEESLLAFEKRLKDRL--KDSATLDFSCEPKLDGLAVSILYENGELVRAATRGDG 58 Query: 158 HSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANP 216 GE+++A +R I +P L + PE +EVRGEV++ + F LN+ G K +ANP Sbjct: 59 QVGENITANVRTISNVPLTLRGEHYPERVEVRGEVFMPREGFAKLNEHQKETGGKVFANP 118 Query: 217 RNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA---KGQYEMLQKMRCLGFPVNNGV 272 RNAA+G LR+L+ R L F+ + LG E L+++ G P+ + Sbjct: 119 RNAAAGSLRQLDSKITAKRPLMFYAYSLGVVQPESFELPTTHSERLKQLGNWGLPLCPDI 178 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 A G ++YYN + R +LPYDIDG+V+KV+ LQ LG AR+PRW I+ KF Sbjct: 179 DTAEGGKGCLAYYNHILEKRDSLPYDIDGVVFKVNRIDLQDALGFVARAPRWAIAQKFPA 238 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 ++ T+LLD++ Q+GRTG +TPVARLEPV +GG ++NATLHN+D I L Sbjct: 239 QEEVTKLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNQDEISRL---------- 288 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 ++VGD V+++RAG+VIP+VV ++ R +FPS CP+C S+V + + Sbjct: 289 -GVKVGDTVVIRRAGDVIPQVVSVVEANRTGSETDITFPSQCPVCDSQVEKLEDE----- 342 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512 A RCTGGL C+AQ+ + LKHF SR AF+I+GLG + +D A + PAD FT Sbjct: 343 -AVARCTGGLICAAQRKQALKHFASRKAFDIDGLGDKLVDQLVD----ADLVHSPADFFT 397 Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572 L S + + + S + L S+ + +L +F+++LGIR VG A +LA Sbjct: 398 L------SLGDVVGLERMAEKSASKLLASLEASKQTTLAKFLYALGIREVGEATAANLAA 451 Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632 ++ + + + +L+ V VG+++A I F+ N ++ALLKE Sbjct: 452 HFETLEAIREA----------SLEALVEVQDVGEVVATHIFNFFNESHNTDVIDALLKEG 501 Query: 633 SPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 + + + +E K V TGTL ++ R A+ + LGA V+ +S+ TD ++ G Sbjct: 502 INWPAIEKPDSDNLPLEGKTCVITGTLSEMGRSDAKARLQLLGAKVAGSVSKNTDFLVAG 561 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 + GSKL KAQ+L V++ +E + L ++ Sbjct: 562 EKAGSKLTKAQELDVEVWDEAALIAFLSEHEK 593 >gi|325267489|ref|ZP_08134142.1| NAD-dependent DNA ligase LigA [Kingella denitrificans ATCC 33394] gi|324981014|gb|EGC16673.1| NAD-dependent DNA ligase LigA [Kingella denitrificans ATCC 33394] Length = 804 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 247/797 (30%), Positives = 375/797 (47%), Gaps = 131/797 (16%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 ++ + + +L Q ++ + YY P + D+EYD L R + + +P P Sbjct: 24 TMSTPQHRIRTLVQTLNRYAHEYYTLDAPSVPDAEYDRLYRELETLEAEYPQF---RLPE 80 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI----------EDLRKFITRIYRFWQKKD 122 P ++GG + V H++P LSL ++ + F R+ + Sbjct: 81 SPTQRVGGAVLDGFETVVHAVPMLSLNNAFSPRDDETGAFGHAEFLAFDERVCKELGVA- 139 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-I 181 + + EPK DG +++ Y+ G V AA RGDG +GE+V+ I+ + IP L Sbjct: 140 --QVEYAAEPKFDGLAVSLLYQNGILVQAATRGDGTTGENVTENIKTVRNIPLKLHGEKQ 197 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240 P ++EVRGEV + K DF ALN + G+KP+ANPRNAA+G LR+L+ R L+FF Sbjct: 198 PALLEVRGEVLMLKADFAALNQRQLEAGQKPFANPRNAAAGSLRQLDSKITAQRKLHFFA 257 Query: 241 HGLGK--TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PY 297 +G+ + E + E L + LGF + G +T V E + PY Sbjct: 258 YGIAQLSGVERLPESHMEELALLHELGFSLPEGYFGTHTGAAAVLREYERLAEHRPRLPY 317 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 +IDG+V KV+ + Q+QLG +R+PRW I+HKF ++A T + ID+Q+GRTG +TPVAR Sbjct: 318 EIDGMVVKVNSLAEQQQLGFVSRAPRWAIAHKFPAEEALTTVEAIDVQVGRTGAITPVAR 377 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 L PV +GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV ++ Sbjct: 378 LAPVFVGGVTVTNATLHNQDEVAR-----------KDVRVGDTVVVRRAGDVIPEVVRVL 426 Query: 418 VNERH------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACS 465 + R +PF P CP+C S V R+ A RCTGG+ C Sbjct: 427 LERRPMQPVDLLGEQMEAKYEPFRLPETCPVCGSAVEREAGE------AVARCTGGMLCQ 480 Query: 466 AQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE 525 AQ+ + L HF SR A +I GLG +Q++ A + ADI+ L Q + + Sbjct: 481 AQRAQGLIHFASRKAMDIAGLGDKQIEALV----AADVLHSFADIYRLDIAQLQTIKDSK 536 Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR----------------- 568 + N+ DSI + R L RF+F+LGIRHVG A+ Sbjct: 537 S---AATKWAQNILDSIAQSRTPPLARFLFALGIRHVGESTAKQLAAAFGNLDTVRRAPE 593 Query: 569 ---------------SLAKYYLS------YQNFAQ------EINNIIAHNNDDWLS-LIR 600 ++A Y+ + Q + + L R Sbjct: 594 PILACLPDIGSIVAHAIAHYFKQPAQQKMLDDLLQHVAPQAAAPSPQTRAHAAPEQWLQR 653 Query: 601 VPLV--GDIIA----------------QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642 +P + + A QA+ + +Q+ R A ALL+E++ ++ Sbjct: 654 LPNIKLSEKRAAELWQLAGSLHALQTDQALPQEWQDWRKQPAHAALLQEITAFTEALPES 713 Query: 643 VS-----------SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 + S I K V TGTL ++R +A + G VS +S+KTD ++ G Sbjct: 714 STDGVSGSLHPEHSPIAGKTFVLTGTLPTLKRDQAAALIEAAGGKVSGSVSKKTDFVVAG 773 Query: 692 DNPGSKLEKAQQLGVKI 708 + GSKLEKAQ LGV + Sbjct: 774 EAAGSKLEKAQALGVAV 790 >gi|169824266|ref|YP_001691877.1| NAD-dependent DNA ligase LigA [Finegoldia magna ATCC 29328] gi|254781333|sp|B0RZW0|DNLJ_FINM2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|167831071|dbj|BAG07987.1| NAD-dependent DNA ligase [Finegoldia magna ATCC 29328] Length = 662 Score = 450 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 196/711 (27%), Positives = 358/711 (50%), Gaps = 59/711 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + + L ++ + YY P+I DSEYD L + PN P Sbjct: 2 EKQDRIKYLVDILNKYAYHYYTLDDPLIADSEYDVLYDELVNLEKE----TGIVLPNSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFT 129 N+IGGE+ K H SL K + E++R ++ + F Q ++N + F Sbjct: 58 NRIGGEVLSGFEKHEHLNTLYSLGKAQSKEEVRNWVDKTIEFVQNYNENHVNKLPKVEFY 117 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 +E K DG + + Y+ G V A RG+G GE +++ ++ I +IP + ++E++G Sbjct: 118 VEFKFDGLTVNLTYDGGYLVMATTRGNGTIGEVITSQVKTINSIPLKIKDTR--LMEIQG 175 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 E + + N N RNAA+G LR L+P R L+ + + + + Sbjct: 176 EGVMPLSSLENYNKT----HEPKLKNARNAAAGALRNLDPAVTRERNLDAYFYNVNYLQD 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + Q EM++ + F + + A +F + + +E+ +R+ + DG+V KV++ Sbjct: 232 NELETQEEMIKFLGDNYFKLYPYEKHATSFEEVSKFIDEIFELRNEIDVLTDGVVIKVND 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F +++LG + PRW I++KF ++ +T + +++ +GRTG +TP A LEPV IG + Sbjct: 292 FKTREKLGYTNKFPRWAIAYKFEPERFTTIVKEVEWNVGRTGKVTPTALLEPVEIGNVTV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATL+N D I+ + +R+ V V+R+ +VIP+++ ++ + D + Sbjct: 352 KRATLNNIDDIER-----------KQVRLNSEVFVRRSNDVIPEIMGVVNPD-QEDTEEI 399 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P +CP C S + RD C ++C+ Q ++R+ HF SR+A NI+GL + Sbjct: 400 EIPHYCPYCHSELFRD--------GVHIFCPNSMSCTPQLVKRMVHFASRNAMNIDGLSE 451 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + L+ + +I+ +I+ +++ Q + GF + NL ++I K +N+ Sbjct: 452 KTLEVLLEK----LNIKSIEEIYDVKKEQLM------QLDGFKEKKSQNLINAIEKSKNV 501 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L FIF+LGI +G + + LA+ Y S+ N + + LI++ +G++I Sbjct: 502 DLANFIFALGIPEIGEKTSFELAQKYKSFDNLREA----------KFEELIQIEDIGNVI 551 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A+ IVEF+ + ++++LL + ++ +N+ +++N V TG+L R + + Sbjct: 552 AEEIVEFFHDETISNSIDSLLSKGIKI--KNPENIEKKLDNLTFVLTGSLVNYSRKELTD 609 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ LGA VS+ +S+ TD ++ G+ GSKL KA+ LGVK+M E++ L Sbjct: 610 KLSNLGAKVSSSVSKNTDYVVYGEKAGSKLTKAKDLGVKLMTEDELNSFLD 660 >gi|154148661|ref|YP_001406577.1| NAD-dependent DNA ligase LigA [Campylobacter hominis ATCC BAA-381] gi|166215571|sp|A7I236|DNLJ_CAMHC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|153804670|gb|ABS51677.1| DNA ligase, NAD-dependent [Campylobacter hominis ATCC BAA-381] Length = 645 Score = 450 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 226/702 (32%), Positives = 371/702 (52%), Gaps = 60/702 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 E + ++ YY P+ D EYD L ++ + + FPDL S P N+ Sbjct: 3 EAEYLKAVEMLNIWAKAYYTQDNPLATDIEYDVLYKKVETFENEFPDLKVSY---SPTNR 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++ K+ H S+E I++ +L ++ R + + F +EPK DG Sbjct: 60 VGDAVSEGFEKINHKAKMWSMEDIFDDNELLAWLERGEKA-------GLEFFVEPKFDGA 112 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G + A RG+G +GE+V+ ++ I +IP L ++ E IE+RGEV I+K+D Sbjct: 113 SLNLTYENGVLISAGTRGNGETGENVTQNVKVINSIP--LQIDYKEKIEIRGEVVIAKSD 170 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256 F ALNDE G +ANPRNAA+G LR+L+ +R+L FF +G + + K E Sbjct: 171 FDALNDERANSGENLFANPRNAAAGSLRQLDSAVVKSRHLKFFPWDVG-ENSLNFKKHSE 229 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +++ +R LGF ++ VR + + Y ++ +R +DG+V +++E + + +G Sbjct: 230 IMEFVRNLGFLKDDFVRVCASLTDLRKAYVDLHEMRERKDILMDGMVIRINELTKCENMG 289 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + PR+M+++KF + +T+L+DI++Q+GRTG++TPV LEPVNI GA + NATLHN Sbjct: 290 YTIKFPRFMVAYKFPPVEKATKLIDINLQVGRTGVITPVGVLEPVNIDGATVRNATLHNF 349 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I L + GD V + R+G+VIPK+ + R+ P P FCP+ Sbjct: 350 DEIARL-----------GLMKGDIVSIIRSGDVIPKITGVFGARRNGSETPIKRPEFCPV 398 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C SR++ + RC L C A+ + L +F S+ NI+GLG+ ++ F+ Sbjct: 399 CGSRLLVE--------DIFIRC-QNLTCKARIVNSLIYFCSKKCMNIDGLGEAIINTLFE 449 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I +DI+TL+ E + GF D ++NL SI R L RFI + Sbjct: 450 K----GKIINISDIYTLKADDL------EGLEGFKDKKISNLLASIENSRISPLYRFITA 499 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI H+G AR +A+ + +N+ + ++++ G+ +A++ V F Sbjct: 500 LGIEHIGEVAARKIAEIFG--ENWLNA----------SFDEILKIDGFGEAMAKSFVGF- 546 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 N +E LL + S + E + + K +V TGTL I R + +E + ++GA Sbjct: 547 -CEINREKIENLLSFLHLSAQKTEISQN-VFTKKTVVITGTLS-ISRDEMKEKLIKMGAN 603 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 V+ +S+KTD ++ G + GSKLEKA+ LGVK ++E++F +L Sbjct: 604 VTNSVSKKTDFVLFGKDAGSKLEKAKMLGVKAISEDEFKEML 645 >gi|13357678|ref|NP_077952.1| DNA ligase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762219|ref|YP_001752204.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|183508850|ref|ZP_02958298.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|81549679|sp|Q9PR23|DNLJ_UREPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781447|sp|B1AIB0|DNLJ_UREP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|11272940|pir||F82930 DNA ligase UU121 [imported] - Ureaplasma urealyticum gi|6899079|gb|AAF30527.1|AE002113_1 DNA ligase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827796|gb|ACA33058.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|182675825|gb|EDT87730.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 673 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 216/712 (30%), Positives = 367/712 (51%), Gaps = 53/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ + ++ L+Q++ + YY P + D YD R + + +P + N Sbjct: 1 MDKIKAKIDELKQKLDQWNYEYYVLDDPSVPDHVYDQTMRELIELENNYPQFKTN---NS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+GG ++ KV H P LSL +N +DL+KF + +EPK Sbjct: 58 PSVKVGGFVSEKFNKVKHKRPMLSLSNAFNDDDLKKFDQDNQNASVDLKG----YVVEPK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192 IDG I+I Y+ K A RGDG +GEDV++ I I IP + + IEVRGEVY Sbjct: 114 IDGLSISIIYKNAKLHQAITRGDGINGEDVTSNILTIKDIPHYIDQKYKDYEIEVRGEVY 173 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251 ++ +DF +ND + + +ANPRNAA+G LR L+ + R L+ F++ L E+ Sbjct: 174 MAFHDFYEMNDNLEESDK-KFANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQELGI 232 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 K YE +Q +R F V++ + + +T + +++ + +R L Y IDG+V K++ + Sbjct: 233 KTHYESIQFLRDNKFKVSDLIVKVDTINEVINQIDCYTKVRDKLSYMIDGIVIKINNLEV 292 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 ++G ++ P+W I++KF S++LL+I +GRTG ++ VA+++P+ + G+++ A Sbjct: 293 YDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSMVEYA 352 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D+IK +DIR+ D + + +AG+VIP V + +++R ++ P+ Sbjct: 353 TLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPYEPI 401 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP CQS +VR+ + RC C +E++ +FVSR+ NIEG+ + Sbjct: 402 INCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSDAII 455 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F+ A I+ AD++ LQ+ ++ T I + S +NL +SIN + SLE Sbjct: 456 NKFYD----ANLIKNIADLYYLQKHKEFILTSDFKI---KEKSFSNLINSINNSKKCSLE 508 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + GIRHVG +A+ +AK + + ++ L V G+ A + Sbjct: 509 FLLTAFGIRHVGPNLAKKIAKQFKTMTALMHA----------NFDELTNVDACGEKAALS 558 Query: 612 IVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++ ++ + N+ V L + I N+ E +NK V TG+ I R + Sbjct: 559 LINWFNDEHNVSLVNQLQQVGVNMEYIDDFIYDDNINIIDEYKNKTFVITGSFS-ISRDE 617 Query: 666 AQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + + + A V +S+KTD ++VG G+KLEKA+ LGVKI+ E +F Sbjct: 618 IKTILEKYYHAKVKNSVSKKTDYVLVGTEAGTKLEKAKLLGVKII-ENEFWK 668 >gi|15645240|ref|NP_207410.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 26695] gi|3182983|sp|O25336|DNLJ_HELPY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|2313737|gb|AAD07680.1| DNA ligase (lig) [Helicobacter pylori 26695] Length = 656 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 225/709 (31%), Positives = 350/709 (49%), Gaps = 61/709 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE ++ YY +PI+ D+ YD L + A P+ ++ N P Sbjct: 3 KSQKEYLERIAYLNTLSHHYYNLDEPIVSDAIYDELYQELKAYEEKNPNGIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G S K H + SL+ ++N +L+ ++ RI K S F PK+D Sbjct: 60 QKVGATTTNSFNKNPHLMRMWSLDDVFNQSELQAWLQRI-----LKAYPSASFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+ GK V A RG+G GE VSA + I IP + IE+RGEV ISK Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHA--IAYNGEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRNAASG LR+L+ R L F G+GK + Sbjct: 173 KDFDALNQERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R +DG+V V+E ++QK+ Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEDNYHTLIREREGFFALLDGMVIVVNELNIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+I ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMINRATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + + R P C Sbjct: 352 NYSEIEK-----------KNIMLSDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAILKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LAKY L+ ++ + + G +A+++V Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N + +L + ++P + ++ SS NK +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIRSLFELLNPKNSDMAEEKQKSSSVFNNKTIVLTGTLSK-PRQEYAQMLE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA +S+ +S KTD +I G+NPGSKL AQ+ GV ++NEE+ L L++ Sbjct: 606 NLGAKISSSVSAKTDFLIAGENPGSKLALAQKHGVSVLNEEELLKRLKE 654 >gi|26553637|ref|NP_757571.1| NAD-dependent DNA ligase [Mycoplasma penetrans HF-2] gi|81748016|sp|Q8EWL9|DNLJ_MYCPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|26453643|dbj|BAC43975.1| NAD-dependent DNA ligase [Mycoplasma penetrans HF-2] Length = 701 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 210/722 (29%), Positives = 367/722 (50%), Gaps = 66/722 (9%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + ++ + +L + ++ ++ YY P + D EYD + + +P+ + PN Sbjct: 18 NNKEILNRIQNLRKNLNQYNYEYYGLENPSVSDYEYDMCLKELIQLETQYPEF---DSPN 74 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P K+GG ++ KV H IP +SL ++ EDL KF I + D + +EP Sbjct: 75 SPSKKVGGYISEKFNKVKHEIPMMSLSNAFDEEDLLKFDNDIKKAIGSSD---FSYVVEP 131 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG I+++Y+ G + A RGDG GEDV+ I+ I ++P L++ + +E+RGEV+ Sbjct: 132 KIDGLSISVKYKDGNLIQAVTRGDGEIGEDVTQNIKTIKSLP--LNIEYDKDLEIRGEVF 189 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 ++K DF +N + + +AN RNAASG LR L+ R L+ + + K +E+ Sbjct: 190 LTKKDFEKINSDPNLTKK--FANARNAASGSLRNLDSNITAKRNLSALFYYVPKATELKI 247 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 QY++L + P++ +R N G++ +E+ R YDIDG+V KV++F+ Sbjct: 248 AKQYDVLSWLDKQLIPISREIRHCNNIQGVIERISELTDTRDQFKYDIDGIVIKVNDFNH 307 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +++G ++ P+W I++KF T+L ID+ +GRTG + +A L+ + + G+ + A Sbjct: 308 YEEIGYTSKFPKWAIAYKFPAVVKQTKLNSIDVTVGRTGRINYIANLDEILLEGSQVKKA 367 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN DYIK +I + D V + +AGE+IPK++ I +R F P Sbjct: 368 TLHNYDYIK-----------DHEIMLNDIVEIYKAGEIIPKIIRSIKEKRDGSQVVFPEP 416 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C S++V+ C +Q++++++F SRDA NIEGL + Sbjct: 417 TNCPSCDSKLVKKEQE-------VDLYCLNENCVEKQIQQIEYFSSRDAMNIEGLSISII 469 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG--------------FGDVSVTN 537 F+++ I D++ L +++ + F D S TN Sbjct: 470 SQLFRNK----IINDAIDLYELAHKKEILIATKQKFYRKNDDGTKTEFERSLFKDKSFTN 525 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 + ++I K ++ S+E+F+ LGI++VG A++L+K + S + A Sbjct: 526 IIEAIEKSKSNSMEKFLTGLGIKYVGLRAAKALSKRFKSIEELAMATR----------EE 575 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKK 651 + +VP G+ +++++V ++ +P+N + K +E KN + NK Sbjct: 576 IEQVPDTGEKMSESLVNWFSDPKNQDLLWRAKKVGINFNYINEFNDVVVKNEHQKYMNKT 635 Query: 652 LVFTGTLQKIQRHKAQEYVTQ-LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIM 709 V TG+ K R++ + Y+ A VS +S+KTD ++VG+N G SKL+KA L ++I+ Sbjct: 636 FVITGSFNK-SRNEIKNYIESVFNAKVSDSVSKKTDYLVVGENAGDSKLKKANDLKIEII 694 Query: 710 NE 711 E Sbjct: 695 TE 696 >gi|148259769|ref|YP_001233896.1| DNA ligase, NAD-dependent [Acidiphilium cryptum JF-5] gi|166215383|sp|A5FWJ5|DNLJ_ACICJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146401450|gb|ABQ29977.1| DNA ligase, NAD-dependent [Acidiphilium cryptum JF-5] Length = 682 Score = 449 bits (1154), Expect = e-123, Method: Composition-based stats. Identities = 265/705 (37%), Positives = 403/705 (57%), Gaps = 40/705 (5%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + L+ L + ++ D YY+ PI+ D+ YDAL+R +++ A PDLA + D Sbjct: 11 PADPKARLAELVERLAAADAAYYRDDAPIMDDAAYDALRREAESLRAAHPDLAAALD--- 67 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + + KV H +P LSL+ ++ D +F I RF + F EPK Sbjct: 68 ---QVGAAPSGAFGKVRHRLPMLSLDNVFEPADFVEFCASIRRFLGL-GAAPLAFVAEPK 123 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I++ YE +FV A RGDG GEDV+ +R + +P L + P+ IE+RGEVY+ Sbjct: 124 IDGLSISLTYENRRFVRGATRGDGTEGEDVTENLRTLRELPATLPDDAPDFIEIRGEVYM 183 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 +K DF+ LN + +ANPRNAA+G LR+L+P +R L+ F + G S+ + Sbjct: 184 TKTDFITLNQGQ----ARQFANPRNAAAGSLRQLDPAVTASRRLSLFAYARGAASQAVGE 239 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 ++ L +R GFPVN + + G + + R+ L YDIDG+VYK+D+ +LQ Sbjct: 240 THWDYLAILRRWGFPVNPLAERVSE-AGAEPFQRSIGERRAGLDYDIDGVVYKIDDLALQ 298 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG R+PRW ++ KF ++A T LL IDIQ+GRTG LTP ARL+PVN+GG L+++AT Sbjct: 299 ERLGFAGRAPRWAVAWKFPAERALTTLLGIDIQVGRTGALTPRARLDPVNVGGVLVSHAT 358 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I +D+R+GD V ++RAG+VIP+++ + R D+ PF FP Sbjct: 359 LHNEDEIAR-----------KDVRIGDTVELQRAGDVIPQILRALPERRPADSVPFVFPD 407 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C + +R RCTGGL+C AQ +ERL HF SR AF+IEG+G++ + Sbjct: 408 HCPVCGALAIRPAGE------VVRRCTGGLSCPAQVVERLIHFCSRLAFDIEGMGEKTVQ 461 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F + PADIFTL+ R+ I + G+G+VS L +I+ RR ISL R Sbjct: 462 EFH----GLGWLESPADIFTLRDREA----AIAALEGWGEVSARKLIAAIDARRRISLAR 513 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FI++LGIR +G + A+ LA++Y SY + +++ +D L L + +G IA+ + Sbjct: 514 FIYALGIRRIGEQNAKLLARHYSSYAVWRRQMEEAGVIGSDARLELGSISGIGPSIAEEL 573 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F+ P N ++ L+ ++ + K +VFTGTL+ + R +A+ Sbjct: 574 AGFFAEPHNRDLLDRLVPMLTIEDEVAAAGGALAG--KTIVFTGTLESLTRPEAKARAEA 631 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 LGA V+ +S+KTD ++VG + GSK KA LGV +++E +F L Sbjct: 632 LGARVTESVSKKTDFVVVGADAGSKAAKAASLGVTVLSEAEFRSL 676 >gi|302380539|ref|ZP_07269004.1| DNA ligase (NAD+) [Finegoldia magna ACS-171-V-Col3] gi|302311482|gb|EFK93498.1| DNA ligase (NAD+) [Finegoldia magna ACS-171-V-Col3] Length = 662 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 196/711 (27%), Positives = 359/711 (50%), Gaps = 59/711 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + + L ++ + YY P+I DSEYD L + PN P Sbjct: 2 EKQDRMKYLVDILNKYAYHYYTLDDPLIADSEYDVLYDELVNLEKE----TGIVLPNSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFT 129 N+IGGE+ K H SL K + E++R ++ + F + ++N + F Sbjct: 58 NRIGGEVLSGFEKHEHLNTLYSLGKAQSKEEVRNWVDKTIEFVENYNENHVNKLPKVEFY 117 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 +E K DG + + Y+ G V A RG+G GE +++ ++ I +IP + ++E++G Sbjct: 118 VEFKFDGLTVNLTYDGGYLVMATTRGNGTIGEVITSQVKTINSIPLKIKDKR--LMEIQG 175 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 E + + N N RNAA+G LR L+P+ R L+ + + + + Sbjct: 176 EGVMPLSSLEKYNKT----HEPKLKNARNAAAGALRNLDPSVTRERNLDAYFYNVNYLQD 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + Q EM++ + F + + A +F I + +E+ +R+ + DG+V KV++ Sbjct: 232 NELETQEEMMKFLGDNYFKLYPYEKHATSFEEISKFIDEIFELRNEIDVLTDGVVIKVND 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F +++LG + PRW I++KF ++ +T + +++ +GRTG +TP A LEPV IG + Sbjct: 292 FKTREKLGYTNKFPRWAIAYKFEPERFTTIVKEVEWNVGRTGKVTPTALLEPVEIGNVTV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATL+N D I+ + +R+ V V+R+ +VIP+++ ++ + D + Sbjct: 352 KRATLNNIDDIER-----------KQVRLNSEVFVRRSNDVIPEIMGVVNPD-QEDTEEI 399 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P +CP C S + RD C ++C+ Q ++R+ HF SR+A NI+GL + Sbjct: 400 EIPHYCPYCHSELFRD--------GVHIFCPNSMSCTPQLVKRMVHFASRNAMNIDGLSE 451 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + L+ + +I+ +I+ +++ Q + GF + NL ++I K +N+ Sbjct: 452 KTLEVLLEK----LNIKSIEEIYDVKKEQLM------QLDGFKEKKSQNLINAIEKSKNV 501 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L FIF+LGI +G + + LA+ Y S+ N + + LI++ +G++I Sbjct: 502 DLANFIFALGIPEIGEKTSFELAQKYKSFDNLREA----------KFEELIQIEDIGNVI 551 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A+ IVEF+ + ++++LL + ++ +N+ +++N V TG+L R + + Sbjct: 552 AEEIVEFFHDETISNSIDSLLSKGIKI--KNPENIEKKLDNLTFVLTGSLVNYSRKELTD 609 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ LGA VS+ +S+ TD ++ G+ GSKL KA+ LGVK+M E++ L Sbjct: 610 KLSNLGAKVSSSVSKNTDYVVYGEKAGSKLTKAKDLGVKLMTEDELNSFLD 660 >gi|296329302|ref|ZP_06871803.1| NAD-dependent DNA ligase LigA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153658|gb|EFG94475.1| NAD-dependent DNA ligase LigA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 696 Score = 448 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 220/711 (30%), Positives = 363/711 (51%), Gaps = 50/711 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L ++++ + D YY +K +I D E+D L + +++ +P + P + Sbjct: 29 EKIVKLREDLNKYRDSYYNDNKSLISDYEFDILLKELESLEEKYPQYKEI---SSPTTSV 85 Query: 79 GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 G + KV H LSL +NI ++ +FI RI + K+ + + LE K+DG Sbjct: 86 GASLKENKFKKVEHLHQMLSLANSYNIGEIVEFIERIKKKIPKE--QELKYCLEVKLDGL 143 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y +GK V A RGDG GEDV+ I I +I + L I +E+RGEV + Sbjct: 144 SISLTYRQGKLVRAVTRGDGFIGEDVTENILEIASIVKTLPQAI--DMEIRGEVVLPLAS 201 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+E + G + +ANPRNAASG LR+L+ R L+ + + L + ++ K E Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKDRGLDAYFYFLVEADKLGLKSHSE 261 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++ + +G T I + + R LPY+ DGLV KVDE +L ++G Sbjct: 262 SIKFLESMGIKTTGIFELLETSKDIEKRIDYWEKERENLPYETDGLVIKVDEINLWDEIG 321 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +++PRW I++KF Q ST L D+ Q+GRTG LTPVA LE V + G+ + A+LHN Sbjct: 322 YTSKTPRWAIAYKFPAHQVSTVLNDVTWQVGRTGKLTPVAELEEVELSGSKVKRASLHNI 381 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 I+ +DIR+GDRV +++A E+IP+VV I ER + + P CP+ Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKIIEEPVCCPV 430 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C ++ R+ K C A+ +++FVSRDA NI GLG + ++ F Sbjct: 431 CNHKLEREEGLVDIK-------CINEECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFID 483 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ DIF L+ ++ +ENI G S+ NL +SI + +N ++ I++ Sbjct: 484 ----LGYIKTVVDIFDLKNHRE----ALENIDKMGKRSIENLLNSIEESKNRDYDKVIYA 535 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +G ++ LAK + + L + +G+I A I+ F+ Sbjct: 536 LGIPFIGKVASKILAKASKNIDKLM----------TMTFEELTSIEGIGEIAANEIIAFF 585 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 +N ++ L ++ + + NV+ K +FTGTL+ R + +E + + Sbjct: 586 TKEKNQKIIQGLKEKGLKFEIKESEASVQNVNPNFVGKNFLFTGTLKHFTREQIKEEIEK 645 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722 LG + +S+ D +IVG+ GSKL+K Q++ +KI+ EE+F+ L +++ Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKVQEIPTIKILTEEEFIELKDKFD 696 >gi|57241999|ref|ZP_00369939.1| DNA ligase, NAD-dependent [Campylobacter upsaliensis RM3195] gi|57017191|gb|EAL53972.1| DNA ligase, NAD-dependent [Campylobacter upsaliensis RM3195] Length = 644 Score = 448 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 221/699 (31%), Positives = 350/699 (50%), Gaps = 60/699 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E + YY+ +P+ D EYD L R P L P+ P KI Sbjct: 3 EYLKKVALANLWMRAYYEEDEPLASDEEYDRLIREIKVFEKENPSLI---SPDSPTQKIA 59 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + K H S+E +++ E+LR + R F +EPK DG + Sbjct: 60 PTIQSKFKKSRHLSKMWSMEDVFDEEELRAWAKRAR--------CEDGFFIEPKFDGASL 111 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 + Y+KG+ V AA RGDG GEDV+ ++ I IP++ +N IE+RGEV I K DF Sbjct: 112 NLLYQKGRLVSAATRGDGEIGEDVTLNVKEIANIPQI--INYEGEIEIRGEVVILKEDFE 169 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN++ +ANPRNAASG LR+L+ R L F+ G+GK + E++ Sbjct: 170 RLNEKRAKENLSLFANPRNAASGSLRQLDTQITKERNLKFYPWGVGK-HTLSFAKHSELM 228 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 +R LGF + VR ++++Y E+ S+R P +DG+V +VD+ +L K+LG Sbjct: 229 CFVRELGFLKDEFVRVCKNLDEVLTHYKELLSLRDLKPMMMDGMVVRVDDIALCKELGYT 288 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 + P++M + KF + STRL+ + +Q+GR+G++TPVA LEPVN+ G ++ +A+LHN D Sbjct: 289 IKYPKFMAAFKFPALEKSTRLVGVSLQVGRSGVITPVAVLEPVNLDGVVVKSASLHNFDE 348 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I+ L ++R+ D V V R+G+VIPK+ + + R +A P CP+C+ Sbjct: 349 IERL-----------NLRLNDFVSVIRSGDVIPKITKVFKDRRGENALKIERPKLCPVCE 397 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S ++ + A L C A+ + + +FVS+ NI+GLG+ ++ ++ + Sbjct: 398 SELLDEG---------ALIKCQNLDCKARLVNSIIYFVSKKCLNIDGLGESIVELLYEKQ 448 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I IF L E + GF + +T L ++I + L RFI +LG Sbjct: 449 K----ITSIESIFRL------KFQDFEGLEGFKEKKITKLLNAIESAKICPLYRFITALG 498 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I H+G A+ LA + + + G+ +A ++VEF + Sbjct: 499 IEHIGEVAAKKLALSF------------DKEWYQKSFEEYKNLEGFGEQMALSLVEFTRV 546 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 N +EA K ++ + E + S K V TGTL + R + + + +LG VS Sbjct: 547 --NQARIEAFYKLLNLENEKQEISTQSPFYEKTFVITGTLSR-PRDEFKALIERLGGKVS 603 Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + +S+KTD ++ G+ GSKLEKA++LGVK ++E QF L Sbjct: 604 SSVSKKTDFVLFGEEAGSKLEKARELGVKCIDEIQFNTL 642 >gi|298736308|ref|YP_003728834.1| NAD-dependent DNA ligase LigA [Helicobacter pylori B8] gi|298355498|emb|CBI66370.1| NAD-dependent DNA ligase LigA [Helicobacter pylori B8] Length = 656 Score = 448 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 220/709 (31%), Positives = 349/709 (49%), Gaps = 61/709 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE ++ YY PI+ D+ YD L + A P+ ++ N P Sbjct: 3 KSQKEYLERIAYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G S K +H + SL+ ++N +L+ ++ RI + + S F PK+D Sbjct: 60 QKVGAITTNSFNKNSHLMRMWSLDDVFNQSELQAWLQRILKAY-----PSASFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+ GK V A RG+G GE V+ + I IP + IE+RGEV ISK Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVTNNAKHIANIPHF--IAYDGEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRNAASG LR+L+ R L F G+GK + Sbjct: 173 KDFDALNQERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R +DG+V VDE +QK+ Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEDNYHTLIREREGFFALLDGMVIVVDELDIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEP+ I GA+I ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPIEIAGAMINRATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + + R P C Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIVNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LA+Y L+ ++ + + G +A+++V Sbjct: 502 NALGIEHIGKGASKTLARYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N + +L + ++P + ++ SS NK +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIRSLFELLNPRNSDMAEEKQKSSSVFNNKTIVLTGTLSK-PRQEYAQMLE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA +S+ +S KTD +I G+NPGSKL A++ GV ++NEE+ L L++ Sbjct: 606 NLGAKISSSVSAKTDFLIAGENPGSKLALAKKHGVSVLNEEELLKRLKE 654 >gi|317014035|gb|ADU81471.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Gambia94/24] Length = 656 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 216/709 (30%), Positives = 346/709 (48%), Gaps = 61/709 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE + ++ YY +PI+ D+ YD L + A P+ ++ N P Sbjct: 3 KSQKEYLERIEYLNTLSHHYYNLDEPIVSDAVYDELYQELKAYEEENPNRIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G K H + SL+ ++N +L+ ++ RI + + + F PK+D Sbjct: 60 QKVGATATNEFSKNPHLMRMWSLDDVFNQNELQAWLQRILKAY-----PNASFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+ GK + A RG+G GE V+ + I IP + IE+RGEV I+K Sbjct: 115 GVSLNLLYQHGKLISATTRGNGLEGELVTNNAKHIANIPHS--IAYSGEIEIRGEVIIAK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRNAASG LR+L+ R L F G+GK + Sbjct: 173 EDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R +DG+V VDE +QK+ Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVDELDIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEPV I GA++T ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMVTKATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + D+V+V R+G+VIPK++ + R Q P C Sbjct: 352 NYSEIEK-----------KNIMLNDKVVVIRSGDVIPKIIKPLETYRDGSQQKIERPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIVNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LAKY L+ ++ + + G +A ++V Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLKKSEA-------------EFLEMEGFGVEMAHSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N + +L ++P ++ SS NK +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIRSLFDLLNPKSSDTAEEKQKSSSVFSNKTIVLTGTLSK-PRQEYAQILE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA +++ +S KTD +I G+N GSKL A++ GV ++NEE+ L L++ Sbjct: 606 NLGAKIASSVSAKTDFLIAGENAGSKLALAKKHGVSVLNEEELLKRLKE 654 >gi|297588239|ref|ZP_06946882.1| DNA ligase (NAD(+)) [Finegoldia magna ATCC 53516] gi|297573612|gb|EFH92333.1| DNA ligase (NAD(+)) [Finegoldia magna ATCC 53516] Length = 662 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 197/711 (27%), Positives = 355/711 (49%), Gaps = 59/711 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + + L ++ + YY P+I DSEYD L + PN P Sbjct: 2 EKKDRIKYLVDILNKYAYHYYTLDDPLIEDSEYDVLYDELVNLEKE----TGIVLPNSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFT 129 N+IGGE+ K H SL K + E++R ++ + F + + N + F Sbjct: 58 NRIGGEVLSGFEKHVHLNTLYSLGKAQSKEEVRNWVNKTIEFVENYNKNHVNKLPQVEFY 117 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 +E K DG + + Y+ G V A RG+G GE +++ +R I +IP + ++E++G Sbjct: 118 VEFKFDGLTVNLTYDGGYLVMATTRGNGTIGEVITSQVRTINSIPLKIKDTR--LMEIQG 175 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 E + + N N RNAA+G LR L+P R L+ + + + E Sbjct: 176 EGVMPLSSLEKYN----QTHEPKLKNARNAAAGALRNLDPAVTRERNLDAYFYNVNYLEE 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + Q +M++ + F + + A +F I + +E+ +R+ + DG+V KV++ Sbjct: 232 NVLETQEQMMKFLGDNYFKLYPYEKHATSFEEISEFIDEIFELRNEIDVLTDGVVIKVND 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F +++LG + PRW I++KF ++ +T + +++ +GRTG +TP A LEPV IG + Sbjct: 292 FKTREKLGYTNKFPRWAIAYKFEPERFTTIVKEVEWNVGRTGKVTPTALLEPVEIGNVTV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATL+N D I+ + +R+ V V+R+ +VIP+++ ++ + D + Sbjct: 352 KRATLNNIDDIER-----------KQVRLNSEVFVRRSNDVIPEIMGVVNPD-QEDTEEI 399 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P +CP C S + RD C ++C+ Q ++R+ HF SR+A NI+GL + Sbjct: 400 EIPHYCPYCHSELFRD--------GVHIFCPNSMSCTPQLVKRMVHFASRNAMNIDGLSE 451 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + L + +I +I+ +++ Q + GF + NL ++I K +N+ Sbjct: 452 KTLKVLLEK----LNITSIEEIYDVKKEQLM------QLEGFKEKKSQNLINAIEKSKNV 501 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L FIF+LGI +G + + LA+ Y S+ N + + LI++ +G++I Sbjct: 502 DLANFIFALGIPEIGEKTSFELAQKYKSFDNLREA----------KFDELIQIEDIGNVI 551 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A+ IVEF+ + ++++LL + ++ +N+ +++N V TG+L R + + Sbjct: 552 AEEIVEFFHDETISHSIDSLLSKGIKI--KNPENIEKKLDNLTFVLTGSLVNYSRKELTD 609 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ LGA VS+ +S+ TD ++ G+ GSKL KA+ LGVK+M E++ L Sbjct: 610 KLSNLGAKVSSSVSKNTDYVVYGEKAGSKLTKAKDLGVKLMTEDELNSFLD 660 >gi|303234054|ref|ZP_07320703.1| DNA ligase (NAD+) [Finegoldia magna BVS033A4] gi|302494979|gb|EFL54736.1| DNA ligase (NAD+) [Finegoldia magna BVS033A4] Length = 662 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 196/711 (27%), Positives = 358/711 (50%), Gaps = 59/711 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + + L ++ + YY P+I DSEYD L + PN P Sbjct: 2 EKQDRIKYLVDILNKYAYHYYTLDDPLIADSEYDVLYDELVNLEKE----TGIVLPNSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFT 129 N+IGGE+ K H SL K + E++R ++ + F + ++N + F Sbjct: 58 NRIGGEVLSGFEKHEHLNTLYSLGKAQSKEEVRNWVDKTIEFVENYNENHVNKLPKVEFY 117 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 +E K DG + + Y+ G V A RG+G GE +++ ++ I +IP + ++E++G Sbjct: 118 VEFKFDGLTVDLTYDGGYLVMATTRGNGTIGEVITSQVKTINSIPLKIKDTR--LMEIQG 175 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 E + + N N RNAA+G LR L+P R L+ + + + + Sbjct: 176 EGVMPLSSLENYNKT----HEPKLKNARNAAAGALRNLDPAVTRERNLDAYFYNVNYLQD 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + Q EM++ + F + + A +F I + +E+ +R+ + DG+V KV++ Sbjct: 232 NELETQEEMMKFLGDNYFKLYPYEKHATSFEEISKFIDEIFELRNEIDVLTDGVVIKVND 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F +++LG + PRW I++KF ++ +T + +++ +GRTG +TP A LEPV IG + Sbjct: 292 FKTREKLGYTNKFPRWAIAYKFEPERFTTIVKEVEWNVGRTGKVTPTALLEPVEIGNVTV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATL+N D I+ + +R+ V V+R+ +VIP+++ ++ + D + Sbjct: 352 KRATLNNIDDIER-----------KQVRLNSEVFVRRSNDVIPEIMGVVNPD-QEDTEEI 399 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P +CP C S + RD C ++C+ Q ++R+ HF SR+A NI+GL + Sbjct: 400 GIPHYCPYCHSELFRD--------GVHIFCPNSMSCTPQLVKRMVHFASRNAMNIDGLSE 451 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + L+ + +I+ +I+ +++ Q + GF + NL ++I K +N+ Sbjct: 452 KTLEVLLEK----LNIKSIEEIYDVKKEQLM------QLDGFKEKKSQNLINAIEKSKNV 501 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L FIF+LGI +G + + LA+ Y S+ N + + LI++ +G++I Sbjct: 502 DLANFIFALGIPEIGEKTSFELAQKYKSFDNLREA----------KFEELIQIEDIGNVI 551 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A+ IVEF+ + ++++LL + ++ +N+ +++N V TG+L R + + Sbjct: 552 AEEIVEFFHDETISNSIDSLLSKGIKI--KNPENIEKKLDNLTFVLTGSLVNYSRKELTD 609 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ LGA VS+ +S+ TD ++ G+ GSKL KA+ LGVK+M E++ L Sbjct: 610 KLSNLGAKVSSSVSKNTDYVVYGEKAGSKLTKAKDLGVKLMTEDELNSFLD 660 >gi|317177554|dbj|BAJ55343.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F16] Length = 656 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 225/711 (31%), Positives = 354/711 (49%), Gaps = 61/711 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE + ++ YY PI+ D+ YD L + A P+ ++ N P Sbjct: 3 KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G S K +H + SL+ ++N +L+ ++ RI + + S F PK+D Sbjct: 60 QKVGAITPNSFNKNSHLMRMWSLDDVFNQNELQAWLQRILKAY-----PSTSFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+ GK V A RG+G GE VSA + I IP + IE+RGEV ISK Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHA--ITYNGEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRNAASG LR+L+ R L F G+GK + Sbjct: 173 KDFDALNQERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R +DG+V V+E ++QK+ Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHALIREREGFFALLDGMVIVVNELNIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEP+ I GA+IT ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPIEIAGAIITKATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + + R P C Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAILKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LAKY L+ ++ + + G +A ++V Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMAHSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N + +L ++P + + ++ SS NK +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAKEKQKSSSVFNNKTIVLTGTLSK-PRQEYAQMLE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA VS+ +S KTD +IVG+N GSKL AQ+ GV ++NEE+ L L++++ Sbjct: 606 NLGAKVSSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD 656 >gi|108563021|ref|YP_627337.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPAG1] gi|123246990|sp|Q1CTQ9|DNLJ_HELPH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|107836794|gb|ABF84663.1| DNA ligase [Helicobacter pylori HPAG1] Length = 656 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 221/709 (31%), Positives = 347/709 (48%), Gaps = 61/709 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE ++ YY PI+ D+ YD L + A P ++ N P Sbjct: 3 KSQKEYLERIAYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPSHIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G K H + SL+ ++N +L+ ++ RI + + S F PK+D Sbjct: 60 QKVGATATNPFNKNPHLMRMWSLDDVFNQSELQAWLQRILKAY-----PSASFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y GK + A RG+G GE VSA + I IP + IE+RGEV ISK Sbjct: 115 GVSLNLLYHHGKLISATTRGNGLEGELVSANAKHIANIPHA--IAYKGEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRNAASG LR+L+ R L F G+GK + Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R +DG+V V+E ++QK+ Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+I ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPVEIAGAMINRATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + + R P C Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSYELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIVNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LAKY L+ ++ + + G +A+++V Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N + +L + ++P + ++ SS NK +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIRSLFELLNPRNSDMAEEKQKSSSVFNNKTIVLTGTLSK-PRQEYAQMLE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA +S+ +S KT+ +IVG+N GSKL AQ+ GV ++NEE+ L L++ Sbjct: 606 NLGAKISSSVSAKTNFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKE 654 >gi|218260659|ref|ZP_03475861.1| hypothetical protein PRABACTJOHN_01525 [Parabacteroides johnsonii DSM 18315] gi|218224427|gb|EEC97077.1| hypothetical protein PRABACTJOHN_01525 [Parabacteroides johnsonii DSM 18315] Length = 606 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 209/647 (32%), Positives = 323/647 (49%), Gaps = 47/647 (7%) Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G +++ +V H P LSL ++ ++++ F RI R + E K DGT Sbjct: 2 GSDLSKEFEQVVHKYPMLSLGNTYSEDEVKDFYERIARDL----NEPFEIVAELKYDGTS 57 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKND 197 I++ YE G+ V A RGDG G+DV+A ++ I ++P L + P E+RGE+ + + Sbjct: 58 ISLTYEDGRLVRAVTRGDGTRGDDVTANVKTIRSVPLKLMGDGYPAAFEIRGEILLPWAE 117 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F LN E +ANPRNAASG L++ NP + E+ A+ ++ Sbjct: 118 FDRLNKEREQQEEPLFANPRNAASGTLKQQNPAIVAARKLDAYFYYLLGEELPAETHFDN 177 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+ R GF V N +R N+ I Y + R LP DG+V KV+ Q LG Sbjct: 178 LEAARSWGFKVPNVIRVCNSLEDIYDYIAYWDAERKNLPVATDGIVLKVNSLRQQLNLGF 237 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+SPRW I++KF ++A TRL + Q+GRTG +TPVA LEPV + G + A+LHN D Sbjct: 238 TAKSPRWAIAYKFQAERAVTRLNSVSFQVGRTGAVTPVANLEPVLLAGTTVKRASLHNAD 297 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFCPI 436 I+GL D+ +GD+V V++ GE+IPK+V + V R F CP Sbjct: 298 IIEGL-----------DLHLGDKVFVEKGGEIIPKIVGVDVEARGLLVGDKVRFIRSCPE 346 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + ++R AAH C C Q +++HFV+R A NI + + Sbjct: 347 CGTPLMRPEGE------AAHYCPNEAGCPPQIKGKIEHFVTRRAMNINMGPET-----VE 395 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 A I+ AD++TL+ + + + + D S NL S+ + + + ER ++ Sbjct: 396 DLYEAGYIKDTADLYTLE------ISDLLRLERWADKSARNLMASLEESKQVPFERVLYG 449 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG +A+ L + S Q + LI V +G+ IA++I+ ++ Sbjct: 450 LGIRFVGETVAKRLVAAFHSMDQLEQA----------SFEDLIAVDEIGERIARSIIAYF 499 Query: 617 QNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + RN V L + E N S +++ +V +GT + R + + + Q G Sbjct: 500 ADERNRNLVNRLKEYGLRMSVAEEVLANRSEKLKGLSIVISGTFARHSRDEYKAMIEQHG 559 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 S +S KTD I+ GDN G +KLEKA +LGVKI+NE++FL ++ + Sbjct: 560 GKNSGSVSGKTDYILAGDNMGPAKLEKAAKLGVKIINEDEFLNMIAE 606 >gi|157414868|ref|YP_001482124.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni 81116] gi|190359240|sp|A8FL10|DNLJ_CAMJ8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157385832|gb|ABV52147.1| DNA ligase [Campylobacter jejuni subsp. jejuni 81116] gi|315931784|gb|EFV10739.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 327] Length = 647 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 207/704 (29%), Positives = 346/704 (49%), Gaps = 60/704 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++E + YY+ +P+ D EYDAL R A + P K Sbjct: 3 KEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRAFEEQN---KDEISKDSPTQK 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 I + K+ H S+E +++ + R + R F +EPK DG Sbjct: 60 IAPTIQSEFKKIAHLKRMWSMEDVFDESEFRAWAKRAK--------CEKNFFIEPKFDGA 111 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE GK V A RGDG GED++ + I IP ++ E IE+RGEV I K+D Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIP--KNIAYKERIEIRGEVVILKDD 169 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N++ + + +ANPRNAASG LR+L+ + R L F+ GLG + + E Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGLG-ENTLNFTKHSE 228 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++Q +R LGF ++ VR ++ Y+E+ ++R P +DG+V ++D+ +L ++LG Sbjct: 229 VMQFIRELGFLKDDFVRLCVNLDEVLKAYDELLALREKKPMMMDGMVVRIDDLALCEELG 288 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + P++M + KF + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I L D+++ D V V R+G+VIPK+ + R S P CP Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 CQS ++ + + C + + + HFVS+ NI+GLG+ ++ +K Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + I TL+ E + GF + + NL ++I + R L RFI + Sbjct: 449 HK----------KITTLESIFHLKFNDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI H+G A+ L+ + + + + + G+ +A ++ EF Sbjct: 499 LGIEHIGEVAAKKLSLSFG------------KEWHKQSFEAYANLEGFGEQMALSLCEFT 546 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + N ++ K ++ I + E I K V TGTL + R + + + +LG Sbjct: 547 RV--NRTRIDEFYKLLNLKIEKLEIKSDGVIFGKTFVITGTLSR-SRDEFKALIEKLGGK 603 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 VS +S+KTD ++ G+ GSKL KA++L +K ++E F L+++ Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLIKAKELEIKCIDESAFNELVKE 647 >gi|307747505|gb|ADN90775.1| DNA ligase [Campylobacter jejuni subsp. jejuni M1] Length = 647 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 207/704 (29%), Positives = 348/704 (49%), Gaps = 60/704 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++E + YY+ +P+ D EYDAL R A + P K Sbjct: 3 KEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRAFEEQN---KDEISKDSPTQK 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 I + K+ H S+E +++ + R + R F +EPK DG Sbjct: 60 IAPTIQSEFKKIAHLKRMWSMEDVFDESEFRAWAKRAK--------CEKNFFIEPKFDGA 111 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE GK V A RGDG GED++ + I IP ++ E IE+RGEV I K+D Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIP--KNIAYKERIEIRGEVVILKDD 169 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N++ + + +ANPRNAASG LR+L+ + R L F+ GLG + + E Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGLG-ENTLNFTKHSE 228 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++Q +R LGF ++ VR ++ Y+E+ ++R P +DG+V ++D+ +L ++LG Sbjct: 229 VMQFIRELGFLKDDFVRLCVNLDEVLKAYDELLALREKKPMMMDGMVVRIDDLALCEELG 288 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + P++M + KF + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I L D+++ D V V R+G+VIPK+ + + R S P CP Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKDRREGLEMEISRPKLCPT 397 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 CQS ++ + + C + + + HFVS+ NI+GLG+ ++ +K Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + I TL+ + E + GF + + NL ++I + R L RFI + Sbjct: 449 HK----------KITTLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI H+G A+ L+ + + + + + G+ +A ++ EF Sbjct: 499 LGIEHIGEVAAKKLSLSFG------------KEWHKQSFEAYANLEGFGEQMALSLCEFT 546 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + N ++ K ++ I + E I K V TGTL + R + + + +LG Sbjct: 547 RV--NRTRIDEFYKLLNLKIEKLEIKSDGVIFGKTFVITGTLSR-SRDEFKALIEKLGGK 603 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 VS +S+KTD ++ G+ GSKL KA++L +K ++E F L+++ Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLIKAKELEIKCIDESAFNELVKE 647 >gi|311744048|ref|ZP_07717854.1| NAD-dependent DNA ligase LigA [Aeromicrobium marinum DSM 15272] gi|311313178|gb|EFQ83089.1| NAD-dependent DNA ligase LigA [Aeromicrobium marinum DSM 15272] Length = 782 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 218/813 (26%), Positives = 357/813 (43%), Gaps = 128/813 (15%) Query: 1 MKKRQLI-PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59 M + P+ L ++AR E+++L + I+ + YY ++ D+ YD R+ +A+ Sbjct: 1 MATDESPGPVPDL--DEARAEVTTLLERIAEAREAYYGQDASLVDDATYDGWLRQLEAVE 58 Query: 60 HAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119 P+L + P +G L V H+ LSL+ ++ ++LR + T+ Sbjct: 59 RRHPELQGQ---DSPTLNVGAATTTDLAPVVHAERMLSLDNVFGADELRAWCTKTTEAAG 115 Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179 + + + E KIDG +++RYE G+ V AA RGDG GEDV++ + +PR L Sbjct: 116 R----PVRWLTEAKIDGLAVSLRYEHGRLVSAATRGDGRVGEDVTSNAARLAGVPRELDG 171 Query: 180 N-IPEIIEVRGEVYISKNDFLALNDEMIAVGR------------------------KPYA 214 P ++EVRGEV+I+ F LN + +A Sbjct: 172 EGHPALVEVRGEVFIAVEAFRRLNALQADLRERVVADATARGQETGRAEASAARRFPAFA 231 Query: 215 NPRNAASGILRRLNPTD----------ITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264 NPRNAA+G LR+L L+ +VHG+G + Q E+ + Sbjct: 232 NPRNAAAGGLRQLLSKKDGLELEAGLARIESLSLYVHGIGAWDDPPVAAQSEVYDLLASW 291 Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 G PV+ R + +V E+ + R+ + ++IDG+V KVDE +L +LGE +R+PRW Sbjct: 292 GLPVSPHGRVLDGVDEVVDRIAELGTGRAAIEHEIDGVVVKVDELALHPELGETSRAPRW 351 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384 I++K+ ++ TRLLDI + +GRTG TP A +EPV++ G+++ ATLHN+D ++ Sbjct: 352 AIAYKYPPEEVHTRLLDIVVSVGRTGRATPFAMMEPVHVAGSVVRQATLHNQDVVR---- 407 Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444 + + +GD V++++AG+VIP+V+ + R F P+ CP C + + Sbjct: 408 -------EKGVLIGDTVVLRKAGDVIPEVLGPVAELRDGSEVEFVMPTRCPECDTALRPM 460 Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA--- 501 + RC C AQ R++H SR A +IE LG+ + E PA Sbjct: 461 -----KEGDIDLRCPNARTCPAQVRGRVEHVGSRGALDIEALGEVTAAALTQPEVPAEPP 515 Query: 502 ---------------------------FSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 RI RR+ + GF D S Sbjct: 516 LRTEAALFELDLATLVPIEVVVRDAETGQPRIDPTTGEPVRRRPFQRVETTYPPGFEDAS 575 Query: 535 VTNLY---------------------DSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 + ++K R L RF+ +L IRHVG AR+LA++ Sbjct: 576 AAERRAAGVRKDHRTILPSAQALTLLEELDKARTKELWRFLVALSIRHVGPVAARALAQH 635 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + S + L V VG IA ++ ++ ++ + Sbjct: 636 FGSVRAIEAAGE----------DELAVVDGVGPTIAGSVKDWLTVDWHVEILRRWEAAGV 685 Query: 634 P------SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 + +V TG+L+ R +E + G + +S+KTD Sbjct: 686 RLHIPDHPGPGAADAEPGPLSGLTIVVTGSLEGFTRDSVKEAILVRGGKAAGSVSKKTDY 745 Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++VG+N GSK EKA+QLG+ I++E F+ LL + Sbjct: 746 VVVGENAGSKAEKAEQLGIPILDEAGFVELLDR 778 >gi|305431677|ref|ZP_07400846.1| NAD-dependent DNA ligase LigA [Campylobacter coli JV20] gi|304445272|gb|EFM37916.1| NAD-dependent DNA ligase LigA [Campylobacter coli JV20] Length = 647 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 212/704 (30%), Positives = 348/704 (49%), Gaps = 60/704 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +KE + YY+ +P+ D EYDAL R + P K Sbjct: 3 KKEYLEKVALAASWMRAYYEKDEPLASDEEYDALIRELRVFEEQN---KDEISKDSPTQK 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 I + K+ H S+E +++ +LR + R F +EPK DG Sbjct: 60 IAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE GK V A RGDG GED++ + I IP ++N E IE+RGEV I K+D Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVLEIDNIP--KTINYKEKIEIRGEVVILKDD 169 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N++ + + +ANPRNAASG LR+L+ + R L F+ G+G + + E Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVG-ENTLNFTKHSE 228 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++Q +R LGF ++ ++ ++ YNE+ S+R P +DG+V +VD+ +L K+LG Sbjct: 229 VMQFIRELGFLKDDFIKLCANLDEVLKAYNELLSLRDQKPMMMDGMVVRVDDLALCKELG 288 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + P++M + KF + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I L D+++ D V V R+G+VIPK+ + R S P CP Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 CQS ++ + + C + + + HFVS+ NI+GLG+ ++ FK Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLFK 448 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + I TL+ + E + GF + + N+ ++I + R+ L RFI + Sbjct: 449 EK----------KINTLESIFHLKFSDFEGLEGFKEKKINNILNAIEQARDCELFRFITA 498 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI H+G A+ LA + + + + G+ +A ++ EF Sbjct: 499 LGIEHIGEVAAKKLALSFG------------KEWHKQSLEAYANLEGFGEQMALSLCEF- 545 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + N ++ K ++ + + S I K V TG L + R + + + LG Sbjct: 546 -SRVNSARIDEFYKLLNLKEQKVQIQEDSVIFGKTFVITGALSR-PRDEFKNLIESLGGK 603 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 VS +S+KTD ++ G GSKL+KAQ+LGVK ++E +F L+++ Sbjct: 604 VSGSVSKKTDYVLFGQEAGSKLDKAQELGVKCIDENEFNELIEK 647 >gi|161760708|ref|YP_062356.2| NAD-dependent DNA ligase LigA [Leifsonia xyli subsp. xyli str. CTCB07] Length = 755 Score = 445 bits (1145), Expect = e-122, Method: Composition-based stats. Identities = 221/779 (28%), Positives = 339/779 (43%), Gaps = 95/779 (12%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E AR E L I D YY+ ++ D EYD + RR + + P+L + Sbjct: 6 EDQVAADARAEAQGLTTRILELRDAYYELDTVLVSDEEYDRMLRRLEELERLHPEL---Q 62 Query: 70 DPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P +GG + V H+ LSL+ +++ E + +I R ++ + + Sbjct: 63 SQDSPTQTVGGRAQTTLFAPVEHAERMLSLDNVFSFEAFEAWAAKIERDAGRR----VDY 118 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS--LNIPEIIE 186 E KIDG I +RYE G V AA RGDG GEDV+ IR IP I + LS P ++E Sbjct: 119 LCELKIDGLAINLRYENGVLVTAATRGDGVVGEDVTENIRHIPAITQRLSGAGPFPPVVE 178 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN----------PTDITRYL 236 VRGEV+ F LN A G + +AN RNAASG LR+ D L Sbjct: 179 VRGEVFFPVAKFEELNANQQAAGERVFANARNAASGSLRQKAEGKNPAQRRLMRDRLGRL 238 Query: 237 NFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296 VHG+G Q + + +R G P + R T + R T+ Sbjct: 239 RMLVHGIGAWPNPPVATQSGVYELLRSWGLPTSAHGRVFGTVQEAADFIGRSAERRDTVE 298 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 ++IDG+V KVDE L +LG +R+PRW I++K+ +Q +T+LLDI + +GRTG TP A Sbjct: 299 HEIDGVVIKVDELVLHDELGATSRAPRWAIAYKYPPEQVNTKLLDIVVSVGRTGRATPFA 358 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 +E V + G+ + ATLHN+D +K + + +GD V++++AG+VIP+V+ Sbjct: 359 VMEKVKVAGSEVRQATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEVLGP 407 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 +V R + F+ P+ CP C + + + RC C AQ R++H Sbjct: 408 VVELRDGTEREFAMPTDCPECGTPLA-----PAKEGDIDLRCPNAEFCPAQVRGRVEHIG 462 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDP---------AFSIRIPADIFTL-------------- 513 SR +IE LG+ + P D+F + Sbjct: 463 SRGGLDIEALGEVAAAALTQPRFPERAPLPTEAGLFGLRLEDLFPIEVVVRDSETGLPKL 522 Query: 514 ----------------QRRQQTSTTKIENILGF----GDVSVTNLYDSINKRRNISLERF 553 Q++ + E G S L ++ R L R Sbjct: 523 TETGVEKVDAPFRRRRQKKDGAFDPEAEAFDGDEIAVPSKSAIELLANLRAARTKPLWRI 582 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + SL IRHVG AR+LA ++ S L V VG I+A A++ Sbjct: 583 LVSLNIRHVGPVAARALADHFGSLDAIRAA----------SRDELAAVDGVGGIVADAVL 632 Query: 614 EFYQNPRNICAVEALLKEVSPSIGR------HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +++ + VE ++ + +V TG+L+ R AQ Sbjct: 633 SWFEIGWHCEIVENWARDGVQFAIPGHPGPGRADTGGGVLSGLTVVATGSLEGYTREAAQ 692 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 E + G ++ +S+KTD + G GSKL KA++LGV++++ QF L++Q L Sbjct: 693 EAIVAAGGKAASSVSKKTDFVAAGPGAGSKLAKAEELGVRVLDAAQFTILVEQGPGALP 751 >gi|188527537|ref|YP_001910224.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Shi470] gi|254781347|sp|B2UTL2|DNLJ_HELPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|188143777|gb|ACD48194.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Shi470] Length = 656 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 223/711 (31%), Positives = 352/711 (49%), Gaps = 61/711 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE + ++ YY I+ D+ YD L + A P+ ++ N P Sbjct: 3 KSQKEYLERIEYLNTLSHHYYNLDDSIVSDAVYDELYQELKAYEGKNPNSIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G S K H + SL+ ++N +L+ ++ RI + + S F PK+D Sbjct: 60 QKVGATTPNSFNKNPHLMRMWSLDDVFNQSELQAWLQRILKAY-----PSASFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+ GK V A RG+G GE VSA + I IP + IE+RGEV ISK Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHA--IAYNGEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRNAASG LR+L+ R L F G+GK + Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFISF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R +DG+V V+E ++QK+ Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ I Q+GR+G +TPVA LEPV I GA+IT ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGIINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + + R P C Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LA+Y L+ ++ + + G +A+++V Sbjct: 502 NALGIEHIGKGASKTLARYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N + +L ++P + ++ SS NK +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAEEKQESSSVFSNKTIVLTGTLSK-PRQEYAQMLE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA +S+ +S KTD +IVG+N GSKL A++ GV ++NEE+ L L++++ Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKEFD 656 >gi|86149767|ref|ZP_01067996.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597007|ref|ZP_01100243.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 84-25] gi|218562237|ref|YP_002344016.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|122952953|sp|Q0PAT1|DNLJ_CAMJE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|85839585|gb|EAQ56845.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190696|gb|EAQ94669.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 84-25] gi|112359943|emb|CAL34732.1| DNA ligase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925847|gb|ADC28199.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni IA3902] gi|315927323|gb|EFV06667.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930607|gb|EFV09637.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 305] Length = 647 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 208/704 (29%), Positives = 345/704 (49%), Gaps = 60/704 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++E + YY+ +P+ D EYDAL R + P K Sbjct: 3 KEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRVFEEQN---KDEISKDSPTQK 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 I + K+ H S+E +++ +LR + R F +EPK DG Sbjct: 60 IAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE GK V A RGDG GED++ + I IP ++ E IE+RGEV I K+D Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIP--KNIAYKERIEIRGEVVILKDD 169 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N++ + + +ANPRNAASG LR+L+ + R L F+ G+G + + E Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVG-ENTLNFTKHSE 228 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++Q +R LGF ++ VR ++ Y+E+ ++R P +DG+V +VD+ +L ++LG Sbjct: 229 VMQFIRELGFLKDDFVRLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELG 288 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + P++M + KF + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I L D+++ D V V R+G+VIPK+ + R S P CP Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 CQS ++ + + C + + + HFVS+ NI+GLG+ ++ +K Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + I TL+ E + GF + + NL ++I + R L RFI + Sbjct: 449 HK----------KITTLESIFHLKFNDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI H+G A+ L+ + + + + G+ +A ++ EF Sbjct: 499 LGIEHIGEVAAKKLSLSFG------------KEWYKQSFEAYANLEGFGEQMALSLCEFT 546 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + N ++ K ++ I + E I K V TGTL + R + + + +LG Sbjct: 547 RV--NRTRIDEFYKLLNLKIEKLEIKSDGVIFGKTFVITGTLSR-PRDEFKALIEKLGGK 603 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 VS +S+KTD ++ G+ GSKL KA++L VK ++E F L+++ Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCIDESAFNELVKE 647 >gi|294789790|ref|ZP_06755020.1| DNA ligase, NAD-dependent [Simonsiella muelleri ATCC 29453] gi|294482296|gb|EFG29993.1| DNA ligase, NAD-dependent [Simonsiella muelleri ATCC 29453] Length = 798 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 245/811 (30%), Positives = 384/811 (47%), Gaps = 147/811 (18%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++++ + YY P + DSEYD L R +A+ A+P P P ++GG + Sbjct: 14 LTEKLNRYAHEYYTLDAPSVPDSEYDRLYRELEALEMAYPTF---RLPESPTQRVGGAIL 70 Query: 84 LSLFKVTHSIPTLSLEKIWNI---------EDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 V H IP LSL ++ + F R+ + + + + +T+EPK Sbjct: 71 REFASVRHKIPMLSLNNAFSPLDDNGKFIHTETLAFDERVRKDLEL---SKVEYTIEPKF 127 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193 DG I++ Y+ G F+ AA RGDG +GEDV+ I+ + IP L P++IEVRGEV + Sbjct: 128 DGLAISLLYQDGIFIQAATRGDGITGEDVTENIKTVRNIPLKLQGQYIPDLIEVRGEVLM 187 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL----GKTSE 248 K DF LN IA +K +ANPRNAA+G LR+LN R L+FF +G+ G E Sbjct: 188 LKKDFEQLNQRQIAQNQKTFANPRNAAAGSLRQLNSRIAAERKLHFFGYGIAQFSGIQPE 247 Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 K E L ++ LGF ++ Y + + RSTLPY+IDG+V KV+ Sbjct: 248 NAPKTHAEELLWLQDLGFSLPTGNWHICANIAEVLQQYENLNAKRSTLPYEIDGMVIKVN 307 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + Q++LG +R+PRW I+HKF ++A T++ ID+Q+GRTG +TPVARL+PV++GG + Sbjct: 308 SLAEQEKLGFVSRAPRWAIAHKFPAEEAMTQVETIDVQVGRTGAITPVARLKPVSVGGVI 367 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH----- 422 + NATLHN+D + +DIR+GD V+V+RAG+VIP+VV +++ R Sbjct: 368 VINATLHNQDEVSR-----------KDIRIGDTVVVRRAGDVIPEVVRVVLEHRPMKIVE 416 Query: 423 -------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463 P+ PF P CP+C S + R+ A RCTGG+ Sbjct: 417 IQSNNIQDDLFPTTKTQSVPEFPPFRLPENCPVCGSAIEREAGE------AIARCTGGMI 470 Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK 523 C AQ+ + L HF SR A +I GLG +Q++ + + ADI+ L + Sbjct: 471 CKAQRSQGLIHFASRKAMDIVGLGDKQIEALVTQD----ILHSFADIYQLDIEKLQQIKD 526 Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSL-------------------------- 557 ++ N+ I R L RF++SL Sbjct: 527 SKS---SATKWAENILIGIENSRKPLLSRFLYSLGIRHVGESTAKQLANAFGDLATVRHA 583 Query: 558 ------GIRHVGAEIARSLAKYYL---------SYQNFAQEINNIIAHNNDDWLS----L 598 + +G+ +A S+A Y+ F + + ++ N D+ L Sbjct: 584 PEPVLACLPDIGSVVAHSIAHYFRQPEQQKLLDDLLRFVEPQHTVLTINICDFAKPARWL 643 Query: 599 IRVPL--VGDIIAQAI---------------------VEFYQNPRNICAVEALLKEVSPS 635 R+P + + AQ + ++ + N + + + ++ Sbjct: 644 SRLPSYKLSEKRAQELWDLAGNSVDGLLTDRVLPREWQDWRKIAENAALLREIDESLTKF 703 Query: 636 IGRHEK---------NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 + + ++ SEI K V TGTL ++R A + G VS +S+KTD Sbjct: 704 DSKQNEAYYLPLGTGSLKSEITGKTFVLTGTLPTLKREDAAAMIEAAGGKVSGSVSKKTD 763 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 ++ G+ GSKLEKA LG+ ++NE++FL + Sbjct: 764 FVVAGEAAGSKLEKALSLGITVLNEDEFLAM 794 >gi|166032192|ref|ZP_02235021.1| hypothetical protein DORFOR_01895 [Dorea formicigenerans ATCC 27755] gi|166027915|gb|EDR46672.1| hypothetical protein DORFOR_01895 [Dorea formicigenerans ATCC 27755] Length = 690 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 188/720 (26%), Positives = 309/720 (42%), Gaps = 64/720 (8%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 +++S+ K + +L ++++ + YY P++ D+EYD L + + Sbjct: 25 DSMSV----KRIKNLVKQLNEYRHAYYNQDAPLVSDAEYDRLFDELKELEEQTGFILS-- 78 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 N P +G L KVTH IP LSLEK I +L F+ + F Sbjct: 79 --NSPTQTVGYYPVSELAKVTHPIPLLSLEKTKLISELLDFMK----------GQEVLFM 126 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 K+DG + YE G+ + A+ RGDG GED++ I A +P L++ E + + G Sbjct: 127 --LKLDGLTTKLIYEDGRLIQASTRGDGEVGEDITHNIPAFLNVP--LTIPHKERLVITG 182 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E +I NDF L D + KPY N RN ASG +R L+P + R + F + + E Sbjct: 183 ESFIPTNDFERLKDTLRDGNGKPYKNGRNFASGSVRSLDPKNCIGRCVRFLPFNVLEGME 242 Query: 249 IFAKGQYEMLQKMRCLG-----FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 + P + + + E+ S + L IDG+V Sbjct: 243 DVPFPDSRACKLEGLTHLGFGYCPFFSISGTGLSKEYAEKFIQELVSTAANLHLPIDGIV 302 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 D S K G+ + +++KF + T L +I+ R G + PV + V I Sbjct: 303 MIFDSLSYSKSCGKTGHHYKDGLAYKFEDDTYETFLREIEWTPTRFGEIAPVGIFDTVEI 362 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G ++ A+LHN +IK L+ + G R+LV + +IP + D + R+ Sbjct: 363 DGCDVSRASLHNLTFIKNLE-----------LVPGCRILVSKRNMIIPHIEDNLDRGRYT 411 Query: 424 DAQPFSFPSFCPICQSRVV-RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 D P CP C S+ G+ V C C +Q R HF S+ A N Sbjct: 412 D----ITPPVCPCCGSKTRTYSRKTSDGRTVETLHCDNPQ-CDSQITRRFVHFASKKAMN 466 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEGL + L+ F + DI+ L+ ++ I + G+G+ S L++SI Sbjct: 467 IEGLSEATLEKFLN----LGYLHSFQDIYHLEEHRE----DIVALDGYGEKSFDRLWESI 518 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRV 601 N R S R++ S+ I +G +R L + + F Q ++ Sbjct: 519 NASRRTSFVRYLVSMDIPMIGRTKSRILDTVFSGNLTAFEQAAVGDY--------DFTQL 570 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQ 659 G+I+ I ++ + N+ + L E + + E ++ +V TG L+ Sbjct: 571 EDFGEILNHNIHSWFADEANLDLWKNLQNEFTFEQRKEETIMTKENKFTGCTIVATGKLE 630 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R + + +LGA + +++KTD +I G+ GSKL KAQ LG+ I+ E +FL ++ Sbjct: 631 HFTRDGINDKILELGAKPGSSVTKKTDYLICGEKAGSKLAKAQSLGIPILTEAEFLEMIA 690 >gi|330502846|ref|YP_004379715.1| NAD-dependent DNA ligase LigA [Pseudomonas mendocina NK-01] gi|328917132|gb|AEB57963.1| NAD-dependent DNA ligase LigA [Pseudomonas mendocina NK-01] Length = 786 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 220/642 (34%), Positives = 342/642 (53%), Gaps = 48/642 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + A + +S L E+ H+ YY +P + D+EYD L R A+ P+L P Sbjct: 1 MTDAAQRISELRNELDAHNYRYYVLDEPSVPDAEYDRLFRELQALEAEHPELV---TPES 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127 P ++GGE + +V H +P LSL + +DLR F + D I Sbjct: 58 PTQRVGGEALSAFGEVRHEVPMLSLGNAFEEDDLRAFDRSVQNGLGVSGGDLFGDGAEIE 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++RYE G+ V A RGDG +GED+++ +R I +P L P+++E Sbjct: 118 YSCEPKLDGLAVSLRYEHGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLQGEGWPQVLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV++ K+ F LN +G K +ANPRNAA+G LR+L+P +R L F +G+G+ Sbjct: 178 VRGEVFMPKSGFEELNARQAEIGGKTFANPRNAAAGSLRQLDPKITASRPLEFCCYGVGQ 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S Q MLQ+++ G P++ ++ A + YY ++ R +L YDIDG+V+K Sbjct: 238 VSGELPGTQVAMLQQLKAWGVPISRELKLAKGVEACLDYYRDIGQRRMSLAYDIDGVVFK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ Q+QLG RAR+P W I+HKF ++ T LLD++ Q+GRTG +TPVARL PV + G Sbjct: 298 VNNIEDQQQLGFRARTPHWAIAHKFPAQEELTELLDVEFQVGRTGAVTPVARLHPVKVAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ NATLHN D + L + +GD V+++RAG+VIP+V+ ++ R +A Sbjct: 358 VMVANATLHNMDEVARL-----------GVMIGDTVIIRRAGDVIPQVMAVVPERRPENA 406 Query: 426 QPFSFPSFCPICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +P P CP+C S V R ++ + +RC G L+C AQ + + HFVSR Sbjct: 407 RPVQIPEQCPVCGSAVERTQLVRRSKGKESLSEGSVYRCVGRLSCQAQLKQAIIHFVSRR 466 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG + ++ + I PAD++ L Q + GF +VS L Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLTFEQIIG------LEGFAEVSSNKLL 516 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I + +L RFI++LGI VG E A+ LA+ S + + + + L Sbjct: 517 KAIEDSKRPALARFIYALGIPDVGEETAKVLARSLASLERVREALPQV----------LT 566 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 +P +G +A I F+++ N + ALL E + + Sbjct: 567 YLPDIGLEVAHEIHSFFEDEHNQQVISALLGECGLELQEEGE 608 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 56/255 (21%), Positives = 95/255 (37%), Gaps = 20/255 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R ++E + + D + F + + G Sbjct: 546 VLARSLASLERVREALPQVLTYLPDIGLEVAHEIHSF--FEDEHNQQVISALLGECGLEL 603 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 S +L + L I VG A+ LA+ + S + D Sbjct: 604 QEEGELSAEFSAIATLGGMLDKLNIPTVGPGAAQKLAERFGSLEGVL----------GGD 653 Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIEN 649 WL + +P + A+A+ EF+ + N + L + + Sbjct: 654 WLDMRQALP---EKQAKAVREFFDSVENAQLACAIEQQLRDFGMHWESEKKVAEGLPLAG 710 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 + V TGTL+ + R A+ + LGA V+ +S KT ++ G GSKL KA +LGVK++ Sbjct: 711 QTWVLTGTLEVMSRDVAKGKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGVKVL 770 Query: 710 NEEQFLFLLQQYNTT 724 +E QFL L+ Y Sbjct: 771 DEAQFLDQLKAYGIE 785 >gi|317009372|gb|ADU79952.1| NAD-dependent DNA ligase LigA [Helicobacter pylori India7] Length = 656 Score = 445 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 222/709 (31%), Positives = 346/709 (48%), Gaps = 61/709 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE ++ YY PI+ D+ YD L + A P ++ N P Sbjct: 3 KSQKEYLERIGYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPSHIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G K H + SL+ ++N +L+ ++ RI + + S F PK+D Sbjct: 60 QKVGATTTNPFNKNPHLMRMWSLDDVFNQNELQAWLQRILKAY-----PSASFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+ GK V A RG+G GE VSA + I IP + IE+RGEV ISK Sbjct: 115 GVSLNLLYQHGKLVSATTRGNGLEGELVSANAKHIANIPHA--IAYKGEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRNAASG LR+L+ R L F G+GK + Sbjct: 173 EDFEALNKERLDANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R + +DG+V V+E ++QK+ Sbjct: 232 KECLDFIVSLGFSAIQYLNLNKNHQEIEENYHTLIRERESFFALLDGMVIVVNELNIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+IT ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVAILEPVEIAGAIITKATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + R P C Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLETYRDGSQHKIERPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIVNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LAKY L+ + + G +A+++V Sbjct: 502 NALGIEHIGKGASKTLAKYGLN-------------ALEKSEAEFLEMEGFGVEMARSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N + +L ++P + ++ SS NK +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSGVTEEKQKSSSVFSNKTIVLTGTLSK-PRQEYAQMLE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA +++ +S KTD +IVG+N GSKL A++ GV ++NEE+ L L++ Sbjct: 606 NLGAKIASSVSAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKE 654 >gi|227499502|ref|ZP_03929609.1| DNA ligase (NAD(+)) [Anaerococcus tetradius ATCC 35098] gi|227218381|gb|EEI83632.1| DNA ligase (NAD(+)) [Anaerococcus tetradius ATCC 35098] Length = 666 Score = 445 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 191/715 (26%), Positives = 340/715 (47%), Gaps = 59/715 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++ R+E+S L ++I+ + YY +P++ D EYD L + + + + Sbjct: 1 MNM---REEISQLIEKINELNYHYYTLDEPLVSDGEYDKLYDKLKKLENE----SGIVLD 53 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------S 125 N P +GG++ K H LS K + +L +I R R ++ +DN Sbjct: 54 NSPTQIVGGQILDKFEKHYHLTKLLSQNKAQSYAELEDWIDRCQRLRKEYNDNHEDKLDE 113 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I F +E K DG + + YE GK AA RG+G GE++ A ++ I +IP + ++ Sbjct: 114 IEFIMEYKFDGLTVNLTYENGKLTSAASRGNGVVGEEILAQVKTIKSIPLTIKE--ESLL 171 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245 E++GE + ++ N + N RNAA+G LR L+ + R Sbjct: 172 EIQGEALMPLSELAKYNKD----NEIQLKNARNAAAGALRNLDTRETARRNLTAYFYAVP 227 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 T+ + K + +ML ++ GF ++ ++ + I+ ++ R + DG+V K Sbjct: 228 TNNLDFKTEEDMLDFLKNQGFNIHPYHKKVHNLDEIIRELKFIEEERKKIDILTDGVVIK 287 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 +++ Q+ L + PRW I+ KF ++ +T L + +GRTG +TP A L+PV G Sbjct: 288 INDKKTQEVLSNTNKFPRWSIAFKFEAEEYTTTLRKVVWNVGRTGKVTPSAILDPVEFSG 347 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 A ++ ATL+N D I + I++G RV ++R+ +VIP+++ ++ + + Sbjct: 348 ATVSRATLNNYDDI-----------LRKKIKIGSRVFIRRSNDVIPEILGVVDENQEGTS 396 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P FCP C S ++++ C ++C Q L R++HF SR+A +IEG Sbjct: 397 -EIEKPKFCPYCSSELIQE--------NVHIVCPNSISCKPQLLARIEHFASRNAMDIEG 447 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 L ++ + D I DI+ L Q + FGD NL ++I Sbjct: 448 LSEKTIAQLMDELD----INEVDDIYDLTYEQLIK------LERFGDKKTKNLLEAIENS 497 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + + L+ FI+++GI +VG +R LA + S+ L + +G Sbjct: 498 KKVDLQHFIYAIGIPNVGERTSRDLANKFKSFDKLRAS----------KVDELTDIDDIG 547 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +I A+ IVEF+ +P ++E LL + E N S + N V TGT++ +R Sbjct: 548 EITAENIVEFFSDPNISKSIENLLAKGIEISKPKEDNNSDGLNNLTFVITGTIENYKRDD 607 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + + G V+ +S+ TDI++ G+ GSK KA++L V+I +++ L++ Sbjct: 608 IKNLIEKNGGKVTGSVSKNTDILLAGEKAGSKKTKAEELNVEIYEDQKLYDFLKE 662 >gi|153952455|ref|YP_001398174.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. doylei 269.97] gi|190359241|sp|A7H3U4|DNLJ_CAMJD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|152939901|gb|ABS44642.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. doylei 269.97] Length = 647 Score = 445 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 206/704 (29%), Positives = 347/704 (49%), Gaps = 60/704 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++E + YY+ +P+ D EYDAL R + P K Sbjct: 3 KEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRVFEEQN---KDEVSKDSPTQK 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 I + K+ H S+E +++ +LR + R F +EPK DG Sbjct: 60 IAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE GK V A RGDG GED++ + I IP ++ + IE+RGEV I K+D Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIP--KNIAYKKRIEIRGEVVILKDD 169 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N++ + + +ANPRNAASG LR+L+ + R L F+ G+G + + E Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVG-ENTLNFTKHSE 228 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++Q +R LGF ++ ++ ++ Y+E+ ++R P +DG+V +VD+ +L ++LG Sbjct: 229 VMQFVRDLGFLKDDFIKLCANLDEVLKAYDELLTLREKKPMMMDGMVVRVDDLALCEELG 288 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + P++M + KF + +TRL+ I++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGINLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I L D+++ D V V R+G+VIPK+ + R S P CP Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISHPKLCPT 397 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 CQS ++ + + C + + + HFVS+ NI+GLG+ ++ +K Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + I TL+ + E + GF + + NL ++I + R L RFI + Sbjct: 449 HK----------KITTLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI H+G A+ L+ + + + + + + G+ +A ++ EF Sbjct: 499 LGIEHIGEVAAKKLSLSFG------------KEWHKQSFEAYVNLEGFGEQMALSLCEFT 546 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + ++ K ++ I + E S I K V TGTL + R + + + LG Sbjct: 547 RVNHTR--IDEFYKLLNLKIEKLEVKSDSVIFGKTFVITGTLSR-PRDEFKALIENLGGK 603 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 VS +S+KTD ++ G+ GSKL KA++L VK ++E F L+++ Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCIDESAFNELVKE 647 >gi|154174322|ref|YP_001408016.1| NAD-dependent DNA ligase LigA [Campylobacter curvus 525.92] gi|190359239|sp|A7GXS4|DNLJ_CAMC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|112803310|gb|EAU00654.1| DNA ligase, NAD-dependent [Campylobacter curvus 525.92] Length = 654 Score = 445 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 208/703 (29%), Positives = 342/703 (48%), Gaps = 61/703 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++ + ++ YY PI D EYDAL A P P Sbjct: 8 DSKESYENAVATLNAWAKAYYDDDAPIASDEEYDALYHEVLAYEQVNPAQKSLF---SPT 64 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +IGG ++ K H S+E I++ +L ++ R + ++ F EPK D Sbjct: 65 TRIGGGVSEGFSKARHIKQMWSMEDIFSQLELVAWLKRGEK-------QNLSFVAEPKFD 117 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + YEKG V A RGDG +GE+V+ R I +IP L+++ IE+RGEV I K Sbjct: 118 GASLNLLYEKGMLVRAITRGDGITGEEVTQNARVIKSIP--LNISYDGRIEIRGEVVIKK 175 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF A+N+E G +NPRNAA+G LR+L+ R L F G+G + Sbjct: 176 ADFDAINEERTRNGETLLSNPRNAAAGSLRQLDSAVTAKRKLLFIPWGVG-EQNLGLAKH 234 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E+++ +R LGF ++ + + G+ YNE+ R +DG+V +VD+ + ++ Sbjct: 235 SEVMKFVRDLGFYRDDFFKILDA-DGLAGAYNELLKQRDEKDVMMDGMVIRVDDLARCEE 293 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG + P++M++ KF + +TRLLD+ +Q+GR+G++TPV L+ V I GA + +ATLH Sbjct: 294 LGYTVKFPKFMVAFKFPAIEKTTRLLDVALQVGRSGVVTPVGVLDEVVIDGARVKSATLH 353 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L + D + + R+G+VIPK+ + R P P FC Sbjct: 354 NFDEIERL-----------GVMKNDLISIIRSGDVIPKITSVFKERRDGTQTPIIRPKFC 402 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S ++ + L C A+ + + H+ S+ NI+GLG+ ++ Sbjct: 403 PECGSHLLDEG---------VFIKCQNLNCRARVINSIIHYASKKCLNIDGLGEAIINLL 453 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 ++ I DI++L+ + + GF D NL D+I + SL RFI Sbjct: 454 YEK----GLISRVIDIYSLKFEDLMA------LEGFKDKKAQNLLDAIEASKGASLARFI 503 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 LG H+G A+ +A+ + + + + D+ + + G+ +A ++++ Sbjct: 504 TGLGCEHIGEVAAKKIAQNFG--EGWLEA----------DFDEVKNLEGFGEEMANSLMD 551 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F N + AL V PS R + + K +V TGTL + R + + + G Sbjct: 552 FI--EVNKDEILALQSIVRPSFERKQITQN-AFSGKSVVITGTLSR-PRDEIKAELEGYG 607 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 A V +S+KTD ++ G N GSKL+KA +LGV++++E +F L Sbjct: 608 AKVVGSVSKKTDFVLAGSNAGSKLQKAVELGVRVIDEGEFERL 650 >gi|308184399|ref|YP_003928532.1| NAD-dependent DNA ligase LigA [Helicobacter pylori SJM180] gi|308060319|gb|ADO02215.1| NAD-dependent DNA ligase LigA [Helicobacter pylori SJM180] Length = 656 Score = 445 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 219/709 (30%), Positives = 347/709 (48%), Gaps = 61/709 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE + ++ YY + I+ D+ YD L + A P+ ++ N P Sbjct: 3 KSQKEYLERIEYLNTLSHHYYNLDESIVSDAVYDELYQELKAYEEENPNRIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G K H + SL+ ++N +L+ ++ RI + + S F PK+D Sbjct: 60 QKVGATTTNPFNKNPHLMRMWSLDDVFNQSELQAWLQRILKAY-----PSASFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y GK V A RG+G GE V+ + I IP + IE+RGEV ISK Sbjct: 115 GVSLNLLYHHGKLVSATTRGNGLEGELVTHNAKHIANIPHF--IAYNGEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRNAASG LR+L+ R L F G+G + Sbjct: 173 EDFEALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVG-EHSLNFLSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R +DG+V V+E ++QK+ Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+IT ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPVEIAGAIITKATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + R P C Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLETYRDGSQHKIERPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LAKY L+ ++ + + G +A+++V Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N + +L ++P + ++ SS +K +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAEEKQKSSSVFSDKTIVLTGTLSK-PRQEYAQMLE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA +++ +S KTD +IVG+NPGSKL AQ+ GV ++NEE+ L L++ Sbjct: 606 NLGAKIASSVSAKTDFLIVGENPGSKLALAQKHGVSVLNEEELLKRLKE 654 >gi|81390835|sp|Q6AEE5|DNLJ_LEIXX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|50951550|gb|AAT89251.1| DNA ligase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 747 Score = 445 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 220/774 (28%), Positives = 338/774 (43%), Gaps = 95/774 (12%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 AR E L I D YY+ ++ D EYD + RR + + P+L + + P Sbjct: 3 ADARAEAQGLTTRILELRDAYYELDTVLVSDEEYDRMLRRLEELERLHPEL---QSQDSP 59 Query: 75 LNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 +GG + V H+ LSL+ +++ E + +I R ++ + + E K Sbjct: 60 TQTVGGRAQTTLFAPVEHAERMLSLDNVFSFEAFEAWAAKIERDAGRR----VDYLCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS--LNIPEIIEVRGEV 191 IDG I +RYE G V AA RGDG GEDV+ IR IP I + LS P ++EVRGEV Sbjct: 116 IDGLAINLRYENGVLVTAATRGDGVVGEDVTENIRHIPAITQRLSGAGPFPPVVEVRGEV 175 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN----------PTDITRYLNFFVH 241 + F LN A G + +AN RNAASG LR+ D L VH Sbjct: 176 FFPVAKFEELNANQQAAGERVFANARNAASGSLRQKAEGKNPAQRRLMRDRLGRLRMLVH 235 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G+G Q + + +R G P + R T + R T+ ++IDG Sbjct: 236 GIGAWPNPPVATQSGVYELLRSWGLPTSAHGRVFGTVQEAADFIGRSAERRDTVEHEIDG 295 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V KVDE L +LG +R+PRW I++K+ +Q +T+LLDI + +GRTG TP A +E V Sbjct: 296 VVIKVDELVLHDELGATSRAPRWAIAYKYPPEQVNTKLLDIVVSVGRTGRATPFAVMEKV 355 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G+ + ATLHN+D +K + + +GD V++++AG+VIP+V+ +V R Sbjct: 356 KVAGSEVRQATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEVLGPVVELR 404 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 + F+ P+ CP C + + + RC C AQ R++H SR Sbjct: 405 DGTEREFAMPTDCPECGTPLA-----PAKEGDIDLRCPNAEFCPAQVRGRVEHIGSRGGL 459 Query: 482 NIEGLGKQQLDFFFKSEDP---------AFSIRIPADIFTL------------------- 513 +IE LG+ + P D+F + Sbjct: 460 DIEALGEVAAAALTQPRFPERAPLPTEAGLFGLRLEDLFPIEVVVRDSETGLPKLTETGV 519 Query: 514 -----------QRRQQTSTTKIENILGF----GDVSVTNLYDSINKRRNISLERFIFSLG 558 Q++ + E G S L ++ R L R + SL Sbjct: 520 EKVDAPFRRRRQKKDGAFDPEAEAFDGDEIAVPSKSAIELLANLRAARTKPLWRILVSLN 579 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG AR+LA ++ S L V VG I+A A++ +++ Sbjct: 580 IRHVGPVAARALADHFGSLDAIRAA----------SRDELAAVDGVGGIVADAVLSWFEI 629 Query: 619 PRNICAVEALLKEVSPSIGR------HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + VE ++ + +V TG+L+ R AQE + Sbjct: 630 GWHCEIVENWARDGVQFAIPGHPGPGRADTGGGVLSGLTVVATGSLEGYTREAAQEAIVA 689 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 G ++ +S+KTD + G GSKL KA++LGV++++ QF L++Q L Sbjct: 690 AGGKAASSVSKKTDFVAAGPGAGSKLAKAEELGVRVLDAAQFTILVEQGPGALP 743 >gi|315586702|gb|ADU41083.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 35A] Length = 656 Score = 445 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 224/711 (31%), Positives = 355/711 (49%), Gaps = 61/711 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE + ++ YY PI+ D+ YD L + A P+ ++ N P Sbjct: 3 KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G S K H + SL+ ++N +L+ ++ RI + + S F PK+D Sbjct: 60 QKVGAITTNSFNKNPHLMRMWSLDDVFNQSELQAWLQRILKAY-----PSTSFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+ GK V A RG+G GE VSA + I IP V + IE+RGEV ISK Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHV--IAYNGEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + ++NPRNAASG LR+L+ R L F G+GK + Sbjct: 173 KDFDALNKERLNANEPLFSNPRNAASGSLRQLDSKITKKRKLQFIPWGVGK-HSLNFLSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R +DG+V V+E ++QK+ Sbjct: 232 KECLDFIVSLGFSAIQHLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+IT ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + + R P C Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAILKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LAKY L+ ++ + + G +A+++V Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N + +L ++P + + ++ SS +K +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAKEKQESSSVFSHKTIVLTGTLSK-PRQEYAQMLE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA +S+ +S KTD +IVG+N GSKL AQ+ GV ++NEE+ L L++++ Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD 656 >gi|57238218|ref|YP_178701.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni RM1221] gi|81353856|sp|Q5HVI4|DNLJ_CAMJR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|57167022|gb|AAW35801.1| DNA ligase, NAD-dependent [Campylobacter jejuni RM1221] gi|315058000|gb|ADT72329.1| DNA ligase [Campylobacter jejuni subsp. jejuni S3] Length = 647 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 207/704 (29%), Positives = 342/704 (48%), Gaps = 60/704 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++E + YY+ +P+ D EYDAL R + P K Sbjct: 3 KEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRVFEEQN---KDEISKDSPTQK 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 I + K+ H S+E +++ +LR + R F +EPK DG Sbjct: 60 IAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE GK V A RGDG GED++ + I IP ++ E IE+RGEV I K+D Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIP--KNIAYKERIEIRGEVVILKDD 169 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N++ + + +ANPRNAASG LR+L+ + R L F+ G+G + + E Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVG-ENTLNFTKHSE 228 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++Q +R LGF ++ VR ++ Y+E+ +R P +DG+V +VD+ +L ++LG Sbjct: 229 VMQFIRELGFLKDDFVRLCANLDEVLKAYDELLVLREKKPMMMDGMVVRVDDLALCEELG 288 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + P++M + KF + +TRL+ +++Q+GR+G +TPVA LEPVN+ G ++ +ATLHN Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGAITPVAVLEPVNLDGVVVKSATLHNF 348 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I L D+++ D V V R+G+VIPK+ + R S P CP Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 CQS ++ + + C + + + HFVS+ NI+GLG+ ++ +K Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + I TL+ E + GF + + NL ++I + R L RFI + Sbjct: 449 HK----------KITTLESIFHLKFNDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI H+G A+ L+ + + + + G+ +A ++ EF Sbjct: 499 LGIEHIGEVAAKKLSLSFG------------KEWYKQSFEAYANLEGFGEQMALSLCEFT 546 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + ++ K ++ I + E I K V TGTL + R + + + +LG Sbjct: 547 RVNHTR--IDEFYKLLNLKIEKLEIKSDGVIFGKTFVITGTLSR-PRDEFKALIEKLGGK 603 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 VS +S+KTD ++ G+ GSKL KA++L VK ++E F L+++ Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCIDESAFNELVKE 647 >gi|332671254|ref|YP_004454262.1| DNA ligase, NAD-dependent [Cellulomonas fimi ATCC 484] gi|332340292|gb|AEE46875.1| DNA ligase, NAD-dependent [Cellulomonas fimi ATCC 484] Length = 834 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 207/787 (26%), Positives = 337/787 (42%), Gaps = 102/787 (12%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 QAR S L + I YY P D++YDA R + +P L P Sbjct: 27 PAQARHRWSELVERIDADQFAYYVLDAPPSSDADYDARLRELAELEERYPGLV---TPQS 83 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + H LSL+ ++ ED+ + R R + + E K Sbjct: 84 PTQRVGGTFSTDFATAAHVQRMLSLDNAFSDEDVAAWADRALRDLGAAAPH---YLCELK 140 Query: 134 IDGTMITIRY------EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEI 184 IDG I + Y E + V AA RGDG +GEDV+ +R I ++P VL + P++ Sbjct: 141 IDGLAIALLYQRPRPGEPARLVRAATRGDGRTGEDVTLNVRTIASVPDVLGGDPATHPDV 200 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 IE+RGEV++ F LN+ +A G+ P+ANPRNAA+G LR+ +P +R L + HG+ Sbjct: 201 IEIRGEVFLPVEAFARLNEAQVAAGKAPFANPRNAAAGSLRQKDPRVTASRPLGMYAHGI 260 Query: 244 GKTSE-----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 G + Q ++ + G P ++ R + G+ R + ++ Sbjct: 261 GAFERGSAGGPGIERQSQVYDLLASWGVPTSSHTRVVDGLDGVREMIAYYGEHRHDVEHE 320 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+V KVDE LQ++LG +R+PRW I++K+ ++ TRLL I++ IGRTG TP A + Sbjct: 321 IDGVVVKVDEIDLQRRLGATSRAPRWAIAYKYPPEEVVTRLLAIELGIGRTGRATPFAVM 380 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV + G+ + ATLHN+D ++ + +RVGD V++++AG+VIP++V Sbjct: 381 EPVFVSGSTVRQATLHNQDVVR-----------AKGVRVGDMVVLRKAGDVIPEIVGPAP 429 Query: 419 N-----------------------------------ERHPDAQPFSFPSFCPICQSRVVR 443 + ++ P SR Sbjct: 430 QAPDDTVERVEWHMPADCPECGTPLRPMREGDVDLRCPNAESCPAQVRGRVEHIGSRGAF 489 Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS-------------------RDAFNIE 484 D+ AA + + E + R IE Sbjct: 490 DIEALGEVTAAALTQPDVPSTPPLRTEADLFALVGYGPDAPQDERARVRDASLRTLGAIE 549 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQ----RRQQTSTTKIENILGFGDVSVTNLYD 540 + + + ++ R L R + E + L D Sbjct: 550 VVVRDPETGLPREDEDGNVRRRAPFRRQLTWSKAERARAEADGRELPDWEPSTAARTLLD 609 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 ++ + L R + +L IR+VG AR+LA+ + S + + L Sbjct: 610 QLDLAKEKELWRVLVALSIRNVGPTAARALAQEFRSMAALREVVE---GDPVAAAERLSG 666 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE---------NKK 651 V VG IAQ++V+++ P + V+A + V+ +E Sbjct: 667 VDGVGPTIAQSLVDWFATPWHAAVVDAWAAAGVRMADTAGEQVARTLEVADEGGTVRGLT 726 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 +V TG L++ R +A+E + G + +S+KTD ++VG+N GSK KA++LG++I++E Sbjct: 727 VVVTGGLERFSRDEAKEAILSRGGKAAGSVSKKTDFVVVGENAGSKETKARELGLRILDE 786 Query: 712 EQFLFLL 718 F LL Sbjct: 787 AGFEALL 793 >gi|317012429|gb|ADU83037.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Lithuania75] Length = 656 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 221/709 (31%), Positives = 350/709 (49%), Gaps = 61/709 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE ++ YY +PI+ D+ YD L + A P+ ++ N P Sbjct: 3 KSQKEYLERIAYLNTLSHHYYNLDEPIVSDAIYDELYQELKAYEEKNPNDIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G S K H + SL+ ++N +L+ ++ RI + + + F PK+D Sbjct: 60 QKVGATTTNSFSKNPHLMRMWSLDDVFNQNELQAWLQRILKAY-----PNASFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+ GK V A RG+G GE VSA + I IP + IE+RGEV ISK Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHF--IAYDGEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRNAASG LR+L+ R L F G+GK + Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R +DG+V V+E +QK+ Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELDIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+I ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPVEIAGAIINRATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + + R P C Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKVERPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIVNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LA+Y L+ ++ + + G +A+++V Sbjct: 502 NALGIEHIGKGASKTLARYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N + +L + ++P + ++ SS NK +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIRSLFELLNPKNSDMAEEKQESSSVFNNKTIVLTGTLSK-PRQEYAQMLE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA +++ +S KTD +I G+NPGSKL AQ+ GV ++NEE+ L L++ Sbjct: 606 NLGAKIASSVSTKTDFLIAGENPGSKLSLAQKHGVSVLNEEELLKHLKE 654 >gi|146307768|ref|YP_001188233.1| NAD-dependent DNA ligase LigA [Pseudomonas mendocina ymp] gi|190359273|sp|A4XVY5|DNLJ_PSEMY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145575969|gb|ABP85501.1| DNA ligase, NAD-dependent [Pseudomonas mendocina ymp] Length = 786 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 226/642 (35%), Positives = 341/642 (53%), Gaps = 48/642 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + A + +S L E+ H+ YY +P + D+EYD L R A+ P+L P Sbjct: 1 MTDAAQRISELRNELDAHNYRYYVLDEPSVPDAEYDRLFRELQALEAEHPELV---TPES 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127 P ++GGE + +V H +P LSL + +DLR F + + + Sbjct: 58 PTQRVGGEALSAFGEVRHEVPMLSLGNAFEEDDLRAFDRSVQSGLGLAGGDLFGGGAEVE 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++RYE G+ V A RGDG +GED+SA +R I +P L P+++E Sbjct: 118 YSCEPKLDGLAVSLRYENGQLVRGATRGDGSTGEDISANVRTIRNVPLKLQGEGWPQVLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV++ K F LN G K +ANPRNAA+G LR+L+P +R L F +G+G+ Sbjct: 178 VRGEVFMPKAGFEELNARQAEAGGKTFANPRNAAAGSLRQLDPKITASRPLEFCCYGVGQ 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S Q MLQ+++ G P++ ++ A + YY ++ R +L YDIDG+V+K Sbjct: 238 VSGELPGTQVAMLQQLKAWGIPISRELKLAKGVEACLDYYRDIGQRRMSLAYDIDGVVFK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ Q+QLG RAR+P W I+HKF ++ T LLD++ Q+GRTG +TPVARL+PV + G Sbjct: 298 VNNIEDQQQLGFRARTPHWAIAHKFPAQEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ NATLHN D + L + +GD V+++RAG+VIP+V+ ++ R DA Sbjct: 358 VMVANATLHNMDEVARL-----------GVMIGDTVIIRRAGDVIPQVMAVVPERRPADA 406 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVA------AHRCTGGLACSAQQLERLKHFVSRD 479 +P P CP+C S V R K K A +RC G L+C AQ + + HFVSR Sbjct: 407 RPVHIPEQCPVCGSAVERTQLIKRSKGKASVSEGSVYRCVGRLSCQAQLKQAIIHFVSRR 466 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG + ++ + I PAD++ L Q + GF +VS L Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLTYEQIIG------LEGFAEVSSNKLL 516 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I + SL RFI++LGI VG E A+ LA+ S + Q + + L Sbjct: 517 AAIENSKRPSLARFIYALGIPDVGEETAKVLARSLASLERVRQALPEV----------LT 566 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 +P +G +A I F+++ N + ALL E + + Sbjct: 567 YLPDIGLEVAHEIHSFFEDAHNQQVISALLGECGLELQDEGE 608 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 58/255 (22%), Positives = 97/255 (38%), Gaps = 20/255 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R ++E + + + D + F + G Sbjct: 546 VLARSLASLERVRQALPEVLTYLPDIGLEVAHEIHSF--FEDAHNQQVISALLGECGLEL 603 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 S +L + L I VG A+ LA+ + S + N D Sbjct: 604 QDEGELSAEFSAVATLGGMLDKLNIPTVGPGAAQKLAERFGSLEGVL----------NGD 653 Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRN----ICAVEALLKEVSPSIGRHEKNVSSEIEN 649 WL + +P + A+A+ EF+ N + L + + + Sbjct: 654 WLDMRQALP---ERQAKAVREFFDETANAQRARAIEQQLREFGMHWESEKKVAEGLPLAG 710 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 + V TGTL+ + R A+E + LGA V+ +S KT ++ G GSKL KA +LGVK++ Sbjct: 711 QTWVLTGTLEVMSRDVAKEKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGVKVL 770 Query: 710 NEEQFLFLLQQYNTT 724 +E QFL L+ Y Sbjct: 771 DEAQFLEQLKSYGIE 785 >gi|307637302|gb|ADN79752.1| NAD-dependent DNA ligase [Helicobacter pylori 908] gi|325995893|gb|ADZ51298.1| DNA ligase [Helicobacter pylori 2018] gi|325997488|gb|ADZ49696.1| NAD-dependent DNA ligase [Helicobacter pylori 2017] Length = 656 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 217/709 (30%), Positives = 345/709 (48%), Gaps = 61/709 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE + ++ YY + I+ D+ YD L + A P+ ++ N P Sbjct: 3 KSQKEYLERIEYLNTLSHHYYNLDESIVSDAVYDELYQELKAYEEENPNHIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G K H + SL+ ++N +L+ ++ RI + + S F PK+D Sbjct: 60 QKVGATATNEFSKNPHLMRMWSLDDVFNQNELQAWLQRILKAY-----PSASFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+ GK V A RG+G GE V+ + I IP + IE+RGEV I+K Sbjct: 115 GVSLNLLYQHGKLVSATTRGNGLEGELVTNNAKHIANIPHS--IAYNGEIEIRGEVIIAK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRNAASG LR+L+ R L F G+GK + Sbjct: 173 EDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R +DG+V V+E +QK+ Sbjct: 232 KECLDFIVSLGFSTIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELDIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEPV I GA++ ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMVNRATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + + R Q P C Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQQKIMHPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LAKY L ++ + + G +A ++V Sbjct: 502 NALGIEHIGKGASKTLAKYGLHVLEKSEA-------------EFLEMEGFGVEMAHSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N + +L ++P ++ SS +K +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIRSLFDLLNPKSSDTTEEKQKSSSVFSDKTIVLTGTLSK-PRQEYAQMLE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA +++ +S KTD +IVG+N GSKL AQ+ GV ++NEE+ L L++ Sbjct: 606 NLGAKIASSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKE 654 >gi|313888253|ref|ZP_07821924.1| DNA ligase (NAD+) [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845656|gb|EFR33046.1| DNA ligase (NAD+) [Peptoniphilus harei ACS-146-V-Sch2b] Length = 665 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 208/712 (29%), Positives = 344/712 (48%), Gaps = 59/712 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ KE+ +L +EI + YY P++ D+EYD L + + + + P Sbjct: 1 MKDKIKEMENLIKEIDKLNYHYYTLDDPLLSDAEYDKLYDKLVNLEKE----SGTVLPYS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI------F 127 P ++GG + K TH S++K E L + RI +F + N++ Sbjct: 57 PTTRVGGAVLSKFEKHTHLARLYSMDKAQGDEALLGWFNRIEKFVSDYNQNNVNKLPEPE 116 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 F +E K DG I + YE V A+ RG+G GE++ ++ I ++P L ++ P IEV Sbjct: 117 FIVELKFDGLTINLTYENQNLVMASTRGNGIIGEEILEQVKTIYSVP--LRISYPGKIEV 174 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 +GE + ++ N + N RNAA+G LR L+P R L F + +G Sbjct: 175 QGEGLMPLSELEKYN----QENDEKLKNARNAAAGALRNLDPKVTKKRNLTAFFYNVGYI 230 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 E K ++ +R F V+ + F I E+ R+ L IDG+ KV Sbjct: 231 EEDMFKSDDDIKNFLRENNFKVSKYNFKVKKFSDITQKIKEIGENRNKLDVLIDGVTIKV 290 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ +K LG + PRW +++KF ++ ST LLD+ +GRT +TP A LEPV+IGG Sbjct: 291 NDIETRKALGYTNKFPRWAVAYKFEAEEISTTLLDVVWNVGRTAKVTPSAILEPVDIGGV 350 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATL+N D I + +++G RVL++R+ +VIP+++ + ++ + + Sbjct: 351 TVQRATLNNYDDI-----------LRKKVKIGSRVLIRRSNDVIPEILGTLPSD--NETR 397 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP C S + +D C L+C Q + RL HF SRDA +IEG Sbjct: 398 EIEKPKTCPYCGSHLYQD--------GVHIFCPNTLSCVPQLVSRLTHFASRDAMDIEGF 449 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 ++ ++ + ++ DI+ L+ I GF + NL ++I + Sbjct: 450 SEKTIEKLMATIG----LKEIPDIYKLKYEDIIK------IEGFKEKRTNNLLNAIENSK 499 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 L FI++LGI +VG + AR LA Y+ S+ L+ + +G+ Sbjct: 500 KPHLSNFIYALGIPNVGIKTARDLADYFKSFDKLKNSQE----------EELVSIGDIGN 549 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I A+ IVEF+ + R I AV+ L + + ++ V TGTL+ I R + Sbjct: 550 ITAKEIVEFFHDDRIIGAVDELFDLGLKPVYEDDNKGPKPLDKNTFVLTGTLE-IPRKEL 608 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +E + LGA V+ +S+ TD ++VG+NPGSK EKA+ L +KI++ ++ L+ Sbjct: 609 EEKLISLGAKVTGSVSKNTDYVVVGENPGSKYEKARSLDIKILSLKELEDLV 660 >gi|118444950|ref|YP_878905.1| NAD-dependent DNA ligase LigA [Clostridium novyi NT] gi|166215579|sp|A0Q2Q3|DNLJ_CLONN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|118135406|gb|ABK62450.1| DNA ligase, NAD-dependent [Clostridium novyi NT] Length = 664 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 197/713 (27%), Positives = 352/713 (49%), Gaps = 58/713 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E + + L +E++ YY P + D +YD + + P Sbjct: 1 MEDKKLLIYELVEELNKLAYEYYVLDNPSVSDKDYDKKYDKLVELEKE----TGLVLPYS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127 P ++G + K TH SL K +++++ + + + + + I Sbjct: 57 PTQRVGDVVLSKFDKYTHKGKLWSLGKAQSLKEVEDWHNKNVKAVNEYNLTHDDKLPPIK 116 Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 + + K DG I Y E G V AA RG G GE+++A + I TIP L ++ +IE Sbjct: 117 YIITKKFDGLTINCTYNEDGILVTAATRGTGEIGEEITAQAKTIKTIP--LKIDNDAVIE 174 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245 V GE ++K F N + P N RN A+G LR LN + R L+ F + +G Sbjct: 175 VHGEAIMTKEAFEEYNKVAV----VPLKNLRNGAAGALRNLNVKETARRNLSAFFYDIGY 230 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 K EML+ ++ G P+++ + +T I N ++ IR+ L YDIDG V Sbjct: 231 NEGTPFKTYGEMLKFIKDHGIPMDDYAMECSTIEEIEKEINYIEEIRNKLNYDIDGAVIA 290 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ ++ LG + P+W +++KF ++A+T+LL+++ +GR+G +TP A LEPV IGG Sbjct: 291 VDDMKTRELLGYTVKFPKWALAYKFEAQEATTKLLEVEWNVGRSGRVTPTAILEPVEIGG 350 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + ATL+N D I+ + +++G V ++R+ +VIP+++ ++ + Sbjct: 351 VTVKRATLNNMDDIER-----------KGVKLGSTVFLRRSNDVIPEIMGVVEES-LEGS 398 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + P+ CP C S +V++ + C L+C Q ++ + HF SR+A NI G Sbjct: 399 KDIEAPTTCPYCGSEIVQE--------GVHYFCENTLSCKPQLVKSIVHFGSREAMNIAG 450 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 ++ + F+ + I+ +D++ +++ + FG+ NL D+I Sbjct: 451 FSEKTAEQLFEELE----IKSISDLYRIKKEDL------LKLNRFGEKKAQNLIDAIESS 500 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + L FI++LGI +VG + + L K + + N + + L+ V +G Sbjct: 501 KECDLPSFIYALGIPNVGKKTSTDLCKKFKTLDNLKKA----------KFEELVSVEDIG 550 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 DI+AQ++++F+ + + +++ LL + E+ + K +V TG+L R++ Sbjct: 551 DIVAQSVLDFFNDETILKSIDELLSLGVTPKFKEEEIKENIFNGKTVVVTGSLSSFSRNE 610 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +E + LGA V+ +S+KTD ++VG +PGSK EKA QL +KI++EE F ++ Sbjct: 611 IKEKLQSLGAKVAGSVSKKTDYVLVGKDPGSKYEKALQLNIKIISEEDFKNMI 663 >gi|86151833|ref|ZP_01070047.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 260.94] gi|85841462|gb|EAQ58710.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 260.94] Length = 647 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 204/704 (28%), Positives = 346/704 (49%), Gaps = 60/704 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++E + YY+ +P+ D EYD L R + P K Sbjct: 3 KEEYLEKVALANLWMRAYYEKDEPLASDEEYDVLIRELRVFEEQN---KDEISKDSPTQK 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 I + K+ H S+E +++ +LR + R F +EPK DG Sbjct: 60 IAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE GK V A RGDG GED++ + I IP ++ E IE+RGEV I K+D Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIP--KNIAYKERIEIRGEVVILKDD 169 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N++ + + +ANPRNAASG LR+L+ + R L F+ G+G + + + Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVG-ENTLNFTKHSD 228 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++Q +R LGF ++ ++ ++ Y+E+ ++R P +DG+V +VD+ +L ++LG Sbjct: 229 VMQFIRELGFLKDDFIKLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELG 288 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + P++M + KF + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I L D+++ D V V R+G+VIPK+ + R S P CP Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 CQS ++ + + C + + + HFVS+ NI+GLG+ ++ +K Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + I TL+ + E + GF + + NL ++I + R L RFI + Sbjct: 449 HK----------KITTLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI H+G A+ L+ + + + + + G+ +A ++ EF Sbjct: 499 LGIEHIGEVAAKKLSLSFG------------KEWHKQSFEAYANLEGFGEQMALSLCEFT 546 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + N ++ K ++ I + E I K V TGTL + R + + + +LG Sbjct: 547 RV--NRTRIDEFYKLLNLKIEKLEIKSDGVIFGKTFVITGTLSR-PRDEFKALIEKLGGK 603 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 VS +S+KTD ++ G+ GSKL KA++L VK ++E F L+++ Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCIDESAFNELVKE 647 >gi|210134818|ref|YP_002301257.1| NAD-dependent DNA ligase LigA [Helicobacter pylori P12] gi|254781345|sp|B6JLJ9|DNLJ_HELP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|210132786|gb|ACJ07777.1| DNA ligase [Helicobacter pylori P12] Length = 656 Score = 443 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 217/709 (30%), Positives = 346/709 (48%), Gaps = 61/709 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE + ++ YY + I+ D+ YD L + A P+ ++ N P Sbjct: 3 KSQKEYLERIEYLNTLSHHYYNLDESIVSDAVYDELYQELKAYEEKNPNDIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G K H + SL+ ++N +L+ ++ RI + + + F PK+D Sbjct: 60 QKVGATTTTPFSKNPHLMRMWSLDDVFNQSELQAWLQRILKVY-----PNASFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y GK V A RG+G GE V+ + I IP + IE+RGEV ISK Sbjct: 115 GVSLNLLYHHGKLVSATTRGNGLEGELVTNNAKHIANIPHF--IAYDGEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRNAASG LR+L+ R L F G+GK + Sbjct: 173 EDFEALNKERLEANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R +DG+V V+E +QK+ Sbjct: 232 KECLDFIVSLGFGAIQYLSLNKNHQEIEESYHTLIKEREGFFALLDGMVIVVNELGIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEPV I GA++ ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPVEIAGAMVNRATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + R P C Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLETYRDGSQHKIERPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIVNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LA+Y L+ ++ + + G +A ++V Sbjct: 502 NALGIEHIGKGASKTLARYGLNVLEKSEA-------------EFLEMEGFGVEMAHSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N + +L ++P + + ++ SS NK +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAKEKQKSSSVFNNKTIVLTGTLSK-PRQEYAQMLE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA +S+ +S KTD +IVG+NPGSKL A++ GV ++NEE+ L L++ Sbjct: 606 NLGAKISSSVSAKTDFLIVGENPGSKLALAKKHGVSVLNEEELLKRLKE 654 >gi|261839558|gb|ACX99323.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 52] Length = 657 Score = 443 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 224/710 (31%), Positives = 352/710 (49%), Gaps = 61/710 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE + ++ YY PI+ D+ YD L + A P+ ++ N P Sbjct: 3 KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G S K H + SL+ ++N +L+ ++ RI + + S F PK D Sbjct: 60 QKVGATTPNSFNKNPHLMRMWSLDDVFNQSELQAWLQRILKAY-----PSASFVCSPKFD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+ GK V A RG+G GE VSA + I IP + IE+RGEV ISK Sbjct: 115 GVSLNLLYQHGKLVSATTRGNGLEGELVSANAKHIANIPHA--IAYNGEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRNAASG LR+L+ R L F G+GK + Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + + I Y+ + R +DG+V V+E ++QK+ Sbjct: 232 KECLDFIVSLGFNSIQYLSLNKNYQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+IT ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + + R P C Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAILKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LAKY L+ ++ + + G +A+++V Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N + +L ++P + + ++ SS +K +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAKEKQESSSVFSHKTIVLTGTLSK-PRQEYAQMLE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 LGA +S+ +S KTD +IVG+N GSKL AQ+ GV ++NEE+ L L++ Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEE 655 >gi|208434535|ref|YP_002266201.1| DNA ligase [Helicobacter pylori G27] gi|254781346|sp|B5Z6Y6|DNLJ_HELPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|208432464|gb|ACI27335.1| DNA ligase [Helicobacter pylori G27] Length = 658 Score = 443 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 219/709 (30%), Positives = 347/709 (48%), Gaps = 61/709 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE ++ YY + I+ D+ YD L + A P+ ++ N P Sbjct: 3 KSQKEYLERIAYLNTLSHHYYNLDESIVSDAVYDELYQELKAYEEKNPNDIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G S K H + SL+ ++N +L+ ++ RI K S F PK+D Sbjct: 60 QKVGATATNSFNKNPHLMRMWSLDDVFNQSELQAWLQRI-----LKTYPSASFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+ GK V A RG+G GE V+ + I IP + IE+RGEV ISK Sbjct: 115 GVSLNLLYQHGKLVSATTRGNGLEGELVTNNAKHIANIPHF--IAYDGEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRNAASG LR+L+ R L F G+GK + Sbjct: 173 EDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R +DG+V V+E ++QK+ Sbjct: 232 KECLDFIVSLGFSAIQYLNLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+I ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMINRATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + D+V+V R+G+VIPK++ + R Q P C Sbjct: 352 NYSEIEK-----------KNIMLNDKVVVIRSGDVIPKIIKPLETYRDGSQQKIMRPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIVNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LAKY L+ ++ + + G + +++V Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMVRSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N + +L + ++P + ++ SS NK +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIRSLFELLNPKNSDMAEEKQESSSVFNNKTIVLTGTLSK-PRQEYAQMLE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA +++ +S KTD +IVG+N GSKL A++ GV ++NEE+ L L++ Sbjct: 606 NLGAKITSSVSAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKK 654 >gi|308061946|gb|ADO03834.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Cuz20] Length = 656 Score = 443 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 220/711 (30%), Positives = 353/711 (49%), Gaps = 61/711 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE + ++ YY I+ D+ YD L + A P+ ++ N P Sbjct: 3 KSQKEYLERIEYLNTLSHHYYNLDDSIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G S K H + SL+ ++N +L+ ++ RI + + S F PK+D Sbjct: 60 QKVGATTPNSFNKNPHLMRMWSLDDVFNQNELQAWLQRILKAY-----PSASFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+ GK V A RG+G GE VSA + I IP + IE+RGEV ISK Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHA--IAYNGEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRNAASG LR+L+ R L F G+GK + Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFPSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R +DG+V V+E ++QK+ Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEPV I GA++T ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAMVTKATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + + R P C Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LA+Y L+ ++ + + G +A+++V Sbjct: 502 NALGIEHIGKGASKTLARYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N + +L ++P + + ++ SS +K +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAKEKQESSSVFNHKTIVLTGTLSK-PRQEYAQMLE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA +S+ +S KTD +IVG+N GSKL A++ GV ++NEE+ L L++++ Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKEFD 656 >gi|217033559|ref|ZP_03438988.1| hypothetical protein HP9810_905g78 [Helicobacter pylori 98-10] gi|216944084|gb|EEC23515.1| hypothetical protein HP9810_905g78 [Helicobacter pylori 98-10] Length = 656 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 224/711 (31%), Positives = 356/711 (50%), Gaps = 61/711 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE + ++ YY PI+ D+ YD L + A P+ ++ N P Sbjct: 3 KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNGIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G + S K +H + SL+ ++N +L+ ++ RI + + S F PK+D Sbjct: 60 QKVGAITSNSFNKNSHLMRMWSLDDVFNQNELQAWLQRILKAY-----PSASFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+ GK V A RG+G GE VSA + I IP + IE+RGEV ISK Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHA--IAYNGEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRNAASG LR+L+ R L F G+GK + Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R +DG+V V+E ++QK+ Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+IT ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + + R P C Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAILKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LAKY L+ ++ + + G +A+++V Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N + +L ++P + + ++ SS +K +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAKEKQENSSAFSHKTIVLTGTLSK-PRQEYAQMLE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA +S+ +S KTD +IVG+N GSKL AQ+ GV ++NEE+ L L++++ Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD 656 >gi|207092489|ref|ZP_03240276.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_AG0C1] Length = 656 Score = 442 bits (1136), Expect = e-121, Method: Composition-based stats. Identities = 220/709 (31%), Positives = 349/709 (49%), Gaps = 61/709 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE ++ YY PI+ D+ YD L + A P+ ++ N P Sbjct: 3 KSQKEYLERIAYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G S K H + SL+ ++N +L+ ++ RI + + S F PK+D Sbjct: 60 QKVGAITTNSFNKNPHLMRMWSLDDVFNQNELQAWLQRILKAY-----PSASFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+ GK V A RG+G GE V+ + I IP + E IE+RGEV ISK Sbjct: 115 GVSLNLLYQHGKLVSATTRGNGLEGELVTNNAKHIANIPHS--IAYNEEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRNAASG LR+L+ R L F G+GK + Sbjct: 173 KDFDALNQERLDANEPLFANPRNAASGSLRQLDSNITKKRKLQFIPWGVGK-HSLNFLSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R +DG+V V+E +QK+ Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELGIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEP+ I GA++T ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPIEIAGAMVTKATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + + R P C Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAILKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LA+Y L+ ++ + + G +A+++V Sbjct: 502 NALGIEHIGKGASKTLARYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N + +L ++P + ++ SS NK +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMTEEKQKSSSVFNNKTIVLTGTLSK-PRQEYAQTLE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA +S+ +S KTD +I G+NPGSKL A++ GV ++NEE+ L L++ Sbjct: 606 NLGAKISSSVSAKTDFLIAGENPGSKLALAKKHGVSVLNEEELLKRLKE 654 >gi|205355436|ref|ZP_03222207.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8421] gi|205346670|gb|EDZ33302.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8421] Length = 647 Score = 442 bits (1136), Expect = e-121, Method: Composition-based stats. Identities = 211/704 (29%), Positives = 347/704 (49%), Gaps = 60/704 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++E + YY+ +P+ D EYDAL R A + P K Sbjct: 3 KEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRAFEEQN---KDEISKDSPTQK 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 I + K+ H S+E ++N +LR + R F +EPK DG Sbjct: 60 IAPIIQSEFKKIAHLKRMWSMEDVFNEGELRAWAKRAK--------CEKNFFIEPKFDGA 111 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE GK V A RGDG GED++ + I IP ++ E IE+RGEV I K+D Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIP--KNIAYKERIEIRGEVVILKDD 169 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N++ + + +ANPRNAASG LR+L+ + R L F+ G+G + + E Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSMTKERNLKFYPWGVG-ENTLNFTKHSE 228 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++Q +R LGF ++ VR ++ Y+E+ +R P +DG+V +VD+ +L ++LG Sbjct: 229 VMQFIRELGFLKDDFVRLCANLDEVLKAYDELLVLREKKPMMMDGMVVRVDDLALCEELG 288 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + P++M + KF + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I L D+++ D V V R+G+VIPK+ + R S P CP Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 CQS ++ + + C + + + HFVS+ NI+GLG+ ++ +K Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + I TL+ + E + GF + + NL ++I + R L RFI + Sbjct: 449 HK----------KITTLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI H+G A+ L+ + + + + + G+ +A ++ EF Sbjct: 499 LGIEHIGEVAAKKLSLSFG------------KEWHKQSFEAYANLEGFGEQMALSLCEFT 546 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + ++ K ++ I + E S I K V TGTL + R + + + +LG Sbjct: 547 RVNHTR--IDEFYKLLNLKIEKLEIKSDSMIFGKTFVITGTLSR-PRDEFKALIEKLGGK 603 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 VS +S+KTD ++ G+ GSKL KA++L VK +NE F L+++ Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCINESAFNELVKE 647 >gi|317180385|dbj|BAJ58171.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F32] Length = 656 Score = 442 bits (1136), Expect = e-121, Method: Composition-based stats. Identities = 225/711 (31%), Positives = 354/711 (49%), Gaps = 61/711 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE + ++ YY PI+ D+ YD L + A P+ ++ N P Sbjct: 3 KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDKLYQELKAYEEKNPNSIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G S K +H + SL+ ++N +L+ ++ RI + + S F PK+D Sbjct: 60 QKVGAITPNSFNKNSHLMRMWSLDDVFNQNELQAWLQRILKAY-----PSASFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+ GK V A RG+G GE VSA + I IP + IE+RGEV ISK Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHA--IAYNGEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRNAASG LR+L+ R L F G+GK + Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R +DG+V V+E ++QK+ Sbjct: 232 KECLDFIVSLGFNSIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+IT ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + + R P C Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAILKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LAKY L+ ++ + + G +A+++V Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N + +L ++P I + ++ SS +K +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDIAKEKQESSSVFSHKTIVLTGTLSK-PRQEYAQMLE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA +S+ +S KTD +IVG+N GSKL AQ+ GV ++NEE+ L L+ ++ Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKGFD 656 >gi|308182775|ref|YP_003926902.1| NAD-dependent DNA ligase LigA [Helicobacter pylori PeCan4] gi|308064960|gb|ADO06852.1| NAD-dependent DNA ligase LigA [Helicobacter pylori PeCan4] Length = 656 Score = 441 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 221/711 (31%), Positives = 350/711 (49%), Gaps = 61/711 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE + ++ YY + I+ D+ YD L + A P+ ++ N P Sbjct: 3 KSQKEYLERIEYLNTLSHHYYNLDESIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G S K H + SL+ ++N +L+ ++ RI + + S F PK+D Sbjct: 60 QKVGATTTNSFNKNPHLMRMWSLDDVFNQSELQAWLQRILKAY-----PSASFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+ GK V A RG+G GE VSA + I IP + IE+RGEV ISK Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHA--IAYNGEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRNAASG LR+L+ R L F G+GK + Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R +DG+V V+E +QK+ Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELGIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEP+ I GA++T ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPIEIAGAMVTKATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + R P C Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLETYRDGSQHKIERPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LAKY L+ + + + G +A+++V Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVL-------------EKSEVEFLEMEGFGAEMARSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N + +L ++P + ++ SS +K +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMTEEKQESSSVFNHKTIVLTGTLSK-PRQEYAQMLE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA +S+ +S KTD +IVG+N GSKL AQ+ GV ++NEE+ L L++++ Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD 656 >gi|257460489|ref|ZP_05625590.1| DNA ligase, NAD-dependent [Campylobacter gracilis RM3268] gi|257441820|gb|EEV16962.1| DNA ligase, NAD-dependent [Campylobacter gracilis RM3268] Length = 668 Score = 441 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 221/700 (31%), Positives = 348/700 (49%), Gaps = 60/700 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 E S ++ YY +PI D EYD L + + P+LA S P +I Sbjct: 4 DEYRSAVDTLNAWARAYYTDDRPIASDEEYDELYSQAEKFEEQNPELALSY---SPTRRI 60 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG ++ K+ H S+E I++ DL ++ R + + F +EPK DG Sbjct: 61 GGAISEGFSKLAHGAQMWSMEDIFDDADLLAWLARGEK-------SGAQFYVEPKFDGAS 113 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + + YE G + AA RGDG GEDV+ RAI ++P L + IE+RGE I+K+DF Sbjct: 114 LNLTYEGGVLISAATRGDGLIGEDVTQNARAIKSVP--LQIPYAGRIEIRGETLIAKSDF 171 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEM 257 ALNDE A G ++NPRNAA+G LR+L+ R L F G+G + ++ Sbjct: 172 DALNDERAANGESLFSNPRNAAAGSLRQLDSAIVAKRKLKFIPWGVG-EHSLSFALHSQI 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 ++ +R LGF + R + I + Y + S+R++ +DG+V +V+E S Q+G Sbjct: 231 MEFVRSLGFLRDEFCRICKSASEIRAAYEALHSMRASKDLMLDGMVIRVNELSKCAQMGY 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 + PR+M+++KF + TRL +I++Q+GRTG +TPVA + VNI GA ++NATLHN D Sbjct: 291 TVKFPRFMVAYKFPAVEKVTRLREINLQVGRTGAVTPVAVVYSVNIDGANVSNATLHNFD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I L + D V + R+G+VIPK+ + R S P CP+C Sbjct: 351 EIARL-----------GLMKNDFVGIIRSGDVIPKITSVYKQRRDGTQSEISRPDRCPVC 399 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +++ + A L C A+ + L +F S+ NIEGL + F+S Sbjct: 400 GEKLLDEG---------ALIKCQNLDCKARVIGSLIYFCSKKCMNIEGLSDATITQLFES 450 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I DI+ L + ++ GF D ++NL +IN +N LERFI SL Sbjct: 451 ----GKISKIGDIYALGAQDL------ADLEGFADKKISNLLGAINASKNAPLERFIASL 500 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI H+G AR +A + + ++R+ G+ +A+++ EF Sbjct: 501 GIEHIGEVAARKIAAAFG------------QDWLDASEDEILRLEGFGEAMARSLAEF-- 546 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 N + L + ++P + + V S ++ +V TGTL + R + + + +GA V Sbjct: 547 CKINREKILNLSEIIAPRAPQM-QTVKSAFTDRSVVITGTLSR-PRDEFKAKLLAMGAKV 604 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +S KTD ++ G GSKL+KA+ LGV++++E +F L Sbjct: 605 QGSVSAKTDFVLAGAEAGSKLQKARSLGVRVIDESEFEAL 644 >gi|261838144|gb|ACX97910.1| DNA ligase [Helicobacter pylori 51] Length = 656 Score = 441 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 222/711 (31%), Positives = 355/711 (49%), Gaps = 61/711 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE + ++ YY PI+ D+ YD L + A P+ ++ N P Sbjct: 3 KSQKEYLERIEYLNTLSHHYYNLDDPIVSDALYDELYQELKAYEEKNPNGIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G S K +H + SL+ ++N +L+ ++ RI + + S F PK+D Sbjct: 60 QKVGAITTNSFNKNSHLMRMWSLDDVFNQSELQAWLQRILKAY-----PSASFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+ GK V A RG+G GE VSA + I IP + IE+RGEV ISK Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHA--IAYNGEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRNAASG LR+L+ R L F G+GK + Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R +DG+V V+E ++Q++ Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHALIREREGFFALLDGMVIVVNELNIQRE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEP+ I GA+IT ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPIEIAGAMITKATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + + R P C Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAILKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LA+Y L+ ++ + + G +A+++V Sbjct: 502 NALGIEHIGKGASKTLARYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N + +L ++P I + ++ SS +K +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDIAKEKQESSSVFSHKTIVLTGTLSK-PRQEYAQMLE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA +S+ +S KTD +IVG+N GSKL AQ+ GV ++NEE+ L L++++ Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKHLKEFD 656 >gi|262276888|ref|ZP_06054681.1| DNA ligase, NAD-dependent [alpha proteobacterium HIMB114] gi|262223991|gb|EEY74450.1| DNA ligase, NAD-dependent [alpha proteobacterium HIMB114] Length = 672 Score = 441 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 244/705 (34%), Positives = 383/705 (54%), Gaps = 43/705 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 KE + ++ ++ YY + P I D+ YD LK++ SE + I Sbjct: 6 KEYQEKKNKLFEYNKFYYDKNSPKIDDATYDRLKKQLIFYEKTN---QISEKEKKVSDTI 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + KV H+ LSLE ++ ED+ +F +I + K + EPKIDG Sbjct: 63 GFSPSKKFSKVKHAESMLSLENAFDQEDIFEFYKKINNYLNFKSSHREELFAEPKIDGIS 122 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 +++Y G + RGDG GED++ +R I +P+ L + VRGEVYI K++F Sbjct: 123 ASLKYVNGYLIQGLSRGDGQFGEDITENLRTIDDVPKRLKKFNSGELIVRGEVYIPKSEF 182 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 ++D +ANPRNAASG LR+ N L FF +G + Q + Sbjct: 183 KNISD--------KFANPRNAASGSLRQKNATNTAKIPLRFFAYGTIFMNHNLQSKQSKF 234 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ GF +N + + Y ++++ RS L YDIDG+VYKVD F LQ++LG Sbjct: 235 LDFLKLEGFKINPLGIIIKDEKDLFANYTKIENKRSELDYDIDGIVYKVDNFKLQQRLGN 294 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 SPRW I+HKF+ ++ +++ +I+IQ+GRTG LTPVA++ P+NIGG +++NATLHNED Sbjct: 295 LTNSPRWAIAHKFSAERGISKIKNIEIQVGRTGALTPVAKINPINIGGVIVSNATLHNED 354 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ +DIR+GD ++V+RAG+VIP+VV++ ++R ++ F FP CP Sbjct: 355 EIER-----------KDIRIGDTIVVQRAGDVIPQVVEVDKSKRDKSSKKFIFPKKCPC- 402 Query: 438 QSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 +++ N T K A RC G C+ E++KH+VS+DA NIEGLGK+ ++ F+ Sbjct: 403 GFETIKEFNKLTKKYDAVRRCPDKGYECNLITKEKIKHYVSKDAMNIEGLGKKVVENFWD 462 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 +++P DI+ L KI + G+G +S NL SINK + ISLE+FI+S Sbjct: 463 ----LNLVKLPHDIYKLNFE------KISQLEGWGKISANNLKKSINKTKKISLEKFIYS 512 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRH+G E A+ LAK++ S + F + + N+ + L+ + +G+ ++ F+ Sbjct: 513 LGIRHIGQENAKILAKFFQSIKIFKKLVFE----KNNLFKDLLELDGIGETQINSLRNFF 568 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 N N E L+K +S + + NK +FTG ++K+ R +A++ V G Sbjct: 569 SNNTNKKVFEELIKNLSILDFIIQ--SKGKFINKTFMFTGGMEKMSRSEAKQIVENEGGK 626 Query: 677 VSAILSRKTDIIIVGD-NPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 V LS+K D ++ GD P K+ +A+ LG KI+ E+ + L+ Sbjct: 627 VLGSLSKKLDYLVAGDSKPTLKKINQAKDLGTKILKEKDWYKLIN 671 >gi|109947386|ref|YP_664614.1| NAD-dependent DNA ligase LigA [Helicobacter acinonychis str. Sheeba] gi|123362647|sp|Q17XL1|DNLJ_HELAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|109714607|emb|CAJ99615.1| DNA ligase [Helicobacter acinonychis str. Sheeba] Length = 654 Score = 441 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 223/709 (31%), Positives = 349/709 (49%), Gaps = 61/709 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE + ++ YY +PI+ D+ YD L + A P ++ N P Sbjct: 3 KSQKEYLERIEYLNTLSHHYYNLDEPIVSDAVYDELYQELKAYEEKNPSQIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G K H SL+ ++N +L+ ++ RI K S F PK+D Sbjct: 60 QKVGATALNQFNKNPHLTRMWSLDDVFNHNELQAWLQRI-----LKAYPSASFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+KGK + A RG+G GE V+ + + I + E IE+RGEV ISK Sbjct: 115 GVSLNLLYQKGKLMKATTRGNGLEGELVTTNAKHVANISHT--IPYNEEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN+E + +ANPRNAASG LR+L+ R L F G+GK + Sbjct: 173 EDFNALNEERLNANEPLFANPRNAASGSLRQLDSKITKKRKLQFIPWGVGK-HSLNFLSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I + Y+ + R +DG+V V+E ++QK+ Sbjct: 232 KECLDFIVSLGFSAIKHLSLNKNHQEIEANYHTLIQERERFFALLDGMVIVVNELNIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+IT ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAIITKATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + + R P C Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQCKIIRPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L CSA+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCSARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LAKY + + + G +A+++V Sbjct: 502 NALGIEHIGKGASKTLAKY-------------GLYVLEKSEDEFLEMEGFGVEMARSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N +++L ++P I ++ SS +K +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIQSLFDLLNPKNSDIIEEKQESSSIFSHKTIVLTGTLSK-PRQEYAQILE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA +S+ +S KTD +IVG+N GSKL AQ+ GV I+NEE+ L L++ Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLSLAQKHGVNILNEEELLKYLKE 654 >gi|104780921|ref|YP_607419.1| NAD-dependent DNA ligase LigA [Pseudomonas entomophila L48] gi|122985912|sp|Q1ICK0|DNLJ_PSEE4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|95109908|emb|CAK14613.1| NAD-dependent DNA ligase [Pseudomonas entomophila L48] Length = 784 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 219/652 (33%), Positives = 347/652 (53%), Gaps = 52/652 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + +L E+ H+ YY +P + D+EYD L A+ P L + + P Sbjct: 3 AESRIHALRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPQLVTA---DSPTQ 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTL 130 ++GG + +V H +P LSL + +DLR F R+ + ++ ++ Sbjct: 60 RVGGAALAAFSQVRHEVPMLSLGNAFEEDDLRDFDRRVVEGLDLPGGDLFAAQAAVDYSC 119 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189 EPK+DG +++ Y G+ V A RGDG +GED+S +R + IP L P ++EVRG Sbjct: 120 EPKLDGLAVSLLYRDGQLVQGATRGDGTTGEDISTNVRTVRNIPLKLQGEGWPAVLEVRG 179 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EVY+SK F LN G K +ANPRNAA+G LR+L+ +R L F +G+G+ SE Sbjct: 180 EVYMSKAGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSE 239 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 F +L+K++ G P++ +R A ++YY ++ + R+ LPY+IDG+V+KV+ Sbjct: 240 PFGDSHIGILEKLKTWGLPISRELRHAAGIEECLAYYRDIGARRNDLPYEIDGVVFKVNS 299 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q++LG RAR PRW I+HKF + T +LD++ Q+GRTG +TPVARL+PV + G ++ Sbjct: 300 LASQRELGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVMV 359 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I L +R+GD V+++RAG+VIP+V+ ++++ R +A+P Sbjct: 360 SNATLHNMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLDRRPENARPV 408 Query: 429 SFPSFCPICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P+ CP+C S+ V R +T A +RC G L+C+AQ + + H+VSR A + Sbjct: 409 EVPTECPVCGSQVERTQLVKRSKGKETISEGAVYRCVGRLSCAAQLKQAIIHYVSRRAMD 468 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+GLG++ ++ IR PAD++ L+ Q + GF +VS L ++I Sbjct: 469 IDGLGEKSVEQLVDE----GLIRSPADLYKLEFEQVV------VLEGFAEVSSRKLLEAI 518 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + SL RFI++LGI VG E A+ LA+ S + + L +P Sbjct: 519 EASKRPSLARFIYALGIPDVGEETAKVLARSLGSLARVQVALPQV----------LTYLP 568 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENK 650 +G +A I F+++ N + LL E S+ + Sbjct: 569 DIGLEVAHEIHNFFEDTHNREVIAQLLASGMQLQEEGELGAEFAASTTLAGM 620 Score = 171 bits (432), Expect = 6e-40, Method: Composition-based stats. Identities = 50/214 (23%), Positives = 81/214 (37%), Gaps = 16/214 (7%) Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575 + I +L G + +L + L I VG A L Sbjct: 583 EDTHNREVIAQLLASGMQLQEEGELGAEFAASTTLAGMLAKLDIPSVGPTGAEKLVDKLG 642 Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN----ICAVEALLKE 631 + D +L A+ + EF+++ N LL Sbjct: 643 TLDKIIAA------DGIDLRQALNT------KQAEGVREFFRDEANQLLARAIEAQLLDF 690 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 + + V TGTL+++ R A+E + +LGA V+ +S KT ++ G Sbjct: 691 GMHWSCEKRSAEGLPLAGQTWVLTGTLERMSRDVAKEQLERLGAKVAGSVSGKTHCVVAG 750 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 GSKL KA +LGVK+++EEQF+ + + TL Sbjct: 751 PGAGSKLAKANELGVKVLDEEQFVAFMAEQGITL 784 >gi|152984776|ref|YP_001349158.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PA7] gi|190359272|sp|A6V7X3|DNLJ_PSEA7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|150959934|gb|ABR81959.1| DNA ligase, NAD-dependent [Pseudomonas aeruginosa PA7] Length = 794 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 219/650 (33%), Positives = 334/650 (51%), Gaps = 52/650 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + A + ++ L E+ H+ YY +P I D+EYD L R A+ P L P+ Sbjct: 3 DTQAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEHPQLL---TPD 59 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--------N 124 P ++ G + +V H IP LSL + +DL F R+ Sbjct: 60 SPTQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGA 119 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPE 183 + ++ EPK+DG +++ YE G+ V A RGDG +GED+++ +R I +P L P+ Sbjct: 120 EVEYSCEPKLDGLAVSLLYENGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPD 179 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 I+EVRGEV++S+ F ALN + + G K +ANPRNAA+G LR+L+ +R L F +G Sbjct: 180 ILEVRGEVFMSRAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYG 239 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G+ S Q +L+ R G P++ +R YY+++ R L Y+IDG+ Sbjct: 240 FGRVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGV 299 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V+KV+ + Q++LG RAR PRW I+HKF ++ T LL ++ Q+GRTG +TPVARL+PV Sbjct: 300 VFKVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQ 359 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G ++NATLHN D + L +R+GD V+++RAG+VIP+V+ +++ R Sbjct: 360 VAGVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRP 408 Query: 423 PDAQPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 DAQP P CP+C S V R ++ A +RC G L+C AQ + + HFV Sbjct: 409 ADAQPIEVPEHCPVCGSAVERTQLVRRSKGRESLSEGAIYRCVGRLSCQAQLKQAIIHFV 468 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 SR A +I+GLG + ++ + PAD++TL Q + GF ++S Sbjct: 469 SRRAMDIDGLGDKIVEQLVDR----GLVASPADLYTLTYDQVF------ELEGFAELSTN 518 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 NL +I R SL RFIF+LGI VG E A+ LA+ S + + + + Sbjct: 519 NLLAAIADSRTPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEV--------- 569 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL--KEVSPSIGRHEKNVS 644 L +P VG +A I F+ + N + L + E Sbjct: 570 -LTYLPDVGAEVAYEIHNFFADEHNRQVIAQLRDAEHGVQLQEEGEVAAE 618 Score = 181 bits (458), Expect = 5e-43, Method: Composition-based stats. Identities = 57/199 (28%), Positives = 89/199 (44%), Gaps = 14/199 (7%) Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 G + SL FI L I + A A LA + S + Sbjct: 605 HGVQLQEEGEVAAEFAACASLAGFIDKLNIPFIAATGAEKLASRFGSLDGIIRA------ 658 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS- 645 DWL L +V + + A+++ +F P N+ A+EA L+E K V Sbjct: 659 ----DWLDLRQVERLPERAAKSLRDFLDEPANVQRALAIEAQLREFGMHWQSERKAVEGL 714 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 + + V TGTL+ + R A+E + LGA V+ +S +T ++ G GSKL KA +LG Sbjct: 715 PLAGQTWVLTGTLEAMSRDVAKEKLEGLGAKVAGSVSARTHCVVAGPGAGSKLAKANELG 774 Query: 706 VKIMNEEQFLFLLQQYNTT 724 +K+++E+ L LL +Y Sbjct: 775 LKVLDEDGLLKLLDEYGVA 793 >gi|297379814|gb|ADI34701.1| DNA ligase, NAD-dependent [Helicobacter pylori v225d] Length = 656 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 222/711 (31%), Positives = 353/711 (49%), Gaps = 61/711 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE + ++ YY PI+ D+ YD L + A P+ ++ N P Sbjct: 3 KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G S K H + SL+ ++N +L+ ++ RI + + S F PK+D Sbjct: 60 QKVGATTPNSFNKNPHLMRMWSLDDVFNQNELQAWLQRILKAY-----PSASFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+ GK V A RG+G GE VSA + I IP + IE+RGEV ISK Sbjct: 115 GVSLNLLYQHGKLVSATTRGNGLEGELVSANAKHIANIPHA--IAYNGEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRNAASG LR+L+ R L F G+GK + Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R +DG+V V+E ++QK+ Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+IT ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + + R P C Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LAKY L+ ++ + + G + +++V Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMVRSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N + +L ++P + + ++ SS +K +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAKEKQESSSVFNHKTIVLTGTLSK-PRQEYAQMLE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA +S+ +S KTD +IVG+N GSKL A++ GV ++NEE+ L L++++ Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKEFD 656 >gi|121612203|ref|YP_001000287.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni 81-176] gi|167005239|ref|ZP_02270997.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni 81-176] gi|166215572|sp|A1VYU6|DNLJ_CAMJJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|87250057|gb|EAQ73015.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 81-176] Length = 647 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 203/704 (28%), Positives = 347/704 (49%), Gaps = 60/704 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++E + YY+ +P+ D EYD L R + P K Sbjct: 3 KEEYLEKVALANLWMRAYYEKDEPLASDEEYDVLIRELRVFEEQN---KDEISKDSPTQK 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 I + K+ H S+E +++ +LR + R F +EPK DG Sbjct: 60 IAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE GK V A RGDG GED++ + I IP ++ E IE+RGEV I K+D Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIP--KNIAYKERIEIRGEVVILKDD 169 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N++ + + +ANPRNAASG LR+L+ + R L F+ G+G + + E Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVG-ENTLNFTKHSE 228 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++Q +R LGF ++ ++ ++ Y+E+ ++R P +DG+V ++D+ +L ++LG Sbjct: 229 VMQFIRELGFLKDDFIKLCANLDEVLKAYDELLALREKKPMMMDGMVVRIDDLALCEELG 288 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + P++M + KF + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I L D+++ D V V R+G+VIPK+ + + R S P CP Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKDRREGLEMEISRPKLCPT 397 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 CQS ++ + + C + + + HFVS+ NI+GLG+ ++ +K Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + I TL+ + E + GF + + NL ++I + R L RFI + Sbjct: 449 HK----------KITTLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI H+G A+ L+ + + + + + G+ +A ++ EF Sbjct: 499 LGIEHIGEVAAKKLSLSFG------------KEWHKQSFEAYANLEGFGEQMALSLCEFT 546 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + ++ K ++ I + E I K V TGTL + R + + + +LG Sbjct: 547 RVNHVR--IDEFYKLLNLKIEKLEIKSDGVIFGKTFVITGTLSR-PRDEFKALIEKLGGK 603 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 VS+ +S+KTD ++ G+ GSKL KA++L VK ++E F L+++ Sbjct: 604 VSSSVSKKTDYVLFGEEAGSKLIKAKELEVKCIDESAFNELVKE 647 >gi|153853203|ref|ZP_01994612.1| hypothetical protein DORLON_00597 [Dorea longicatena DSM 13814] gi|149753989|gb|EDM63920.1| hypothetical protein DORLON_00597 [Dorea longicatena DSM 13814] Length = 692 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 189/719 (26%), Positives = 308/719 (42%), Gaps = 64/719 (8%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 +++SI K + +L ++++ + YY P++ D+EYD L + + + Sbjct: 25 DSMSI----KRIKNLVKQLNEYRHAYYNQDAPLVSDAEYDRLFDKLKKLEEQTGFILS-- 78 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 N P +G L KVTH P LSLEK I +L F+ + F Sbjct: 79 --NSPTQTVGYYPVSELAKVTHPTPLLSLEKTKLISELLDFMK----------GQEVLFM 126 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 K+DG + YE GK + A+ RGDG GED++ I A +P L++ E + + G Sbjct: 127 --LKLDGLTTKLIYEDGKLIQASTRGDGEVGEDITHNIPAFLNVP--LTIPHKERLVITG 182 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E +I NDF L D + KPY N RN ASG +R L+P + R + F + + E Sbjct: 183 ESFIPTNDFERLKDTLRDGNGKPYKNGRNFASGSVRSLDPKNCIGRCVRFLPFNVLEGME 242 Query: 249 IFAKGQYEMLQKMRCLG-----FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 + P + + + E+ S + L IDG+V Sbjct: 243 DVPFPDSRACKLEGLTHLGFGYCPFFSISGTGLSREYAEKFIQELVSTAANLHLPIDGIV 302 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 D S K G+ + +++KF T L +I+ R G + PV + V I Sbjct: 303 MIFDSLSYSKSCGKTGHHYKDGLAYKFENDTYETVLREIEWTPTRFGEIAPVGIFDTVEI 362 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G ++ A+LHN +IK L+ + G R+LV + +IP + D + R+ Sbjct: 363 DGCDVSRASLHNLTFIKNLE-----------LVPGCRILVSKRNMIIPHIEDNLDRGRYT 411 Query: 424 DAQPFSFPSFCPICQSRVV-RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 D P CP C S+ G+ V C C +Q R HF S+ A N Sbjct: 412 D----ITPPVCPCCGSKTRTYSRKTSDGRTVETLHCNNPQ-CDSQITRRFVHFASKKAMN 466 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEGL + L+ F + DI+ L+ ++ +I + G+G+ S L++SI Sbjct: 467 IEGLSEATLEKFLN----LGYLHSFQDIYHLEEHRE----EIVALDGYGEKSFDRLWESI 518 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRV 601 N R S R++ S+ I +G +R L + + F Q ++ Sbjct: 519 NASRRTSFVRYLVSMDIPMIGRTKSRILDTVFSGNLTAFEQAAVGDY--------DFTQL 570 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQ 659 G I+ I ++ + N+ + L E + + E ++ +V TG L+ Sbjct: 571 EDFGKILNHNIHSWFADEANLDLWKNLQNEFTFEQRKEEPIMTKENKFTGCTIVATGKLE 630 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R + + +LGA + +++KTD +I G+ GSKL KAQ LG+ I+ E +FL ++ Sbjct: 631 HFTRDGINDKILELGAKPGSSVTKKTDYLICGEKAGSKLAKAQSLGIPILTEAEFLEMI 689 >gi|187734527|ref|YP_001876639.1| DNA ligase, NAD-dependent [Akkermansia muciniphila ATCC BAA-835] gi|254781249|sp|B2UL69|DNLJ_AKKM8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|187424579|gb|ACD03858.1| DNA ligase, NAD-dependent [Akkermansia muciniphila ATCC BAA-835] Length = 794 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 218/780 (27%), Positives = 367/780 (47%), Gaps = 104/780 (13%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + A + + L E+ H+ YY+ ++P I D+EYDAL + + A P+L DP+ Sbjct: 42 EDPAHRRIDYLRSELRRHNRLYYEQAEPEISDAEYDALFLELEKLEKAHPEL---SDPDS 98 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWN-------IEDLRKFITRIYRFWQKKDDNSI 126 P ++GG ++ H++P LS++ I+ E+L +F ++ R Q ++ Sbjct: 99 PTRRVGGAPLQGFNQIRHAVPMLSIDDIFEQRDAPVPDEELAEFYHKLSRALQ---TENV 155 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 ++EPKIDG ++I Y GK YAA RGDG G+DV+A +R I ++P L P ++E Sbjct: 156 PVSVEPKIDGVALSIMYRNGKLAYAATRGDGDVGDDVTANVRTIRSVPLTLPPGAPPVLE 215 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245 VRGEV++ F LN+E A G +ANPRNA +G L++L+P R L F HGLG Sbjct: 216 VRGEVFMPNEAFAKLNEERDADGLPAFANPRNATAGTLKQLDPRQVAARPLAFLAHGLGA 275 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + + +R G P N V ++ ++ +R TLPY DG V K Sbjct: 276 YEGPELRDAKDFWNMLRHCGIPCNEPVYYTDSLESTRQAVRDIDRLRHTLPYGTDGAVIK 335 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 + + ++ LG AR+PRW ++KF +Q T LL+I +Q+GRTG+LTPVA L+PV + G Sbjct: 336 ISSTATREALGATARAPRWAAAYKFPPEQKETTLLNIVVQVGRTGVLTPVAELQPVLLSG 395 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + + ATLHN+D I +D+R+GD VLV++AGE+IP V+ + +++R DA Sbjct: 396 STVARATLHNQDEIDR-----------KDVRIGDTVLVEKAGEIIPAVLKVNLSKRPQDA 444 Query: 426 QPFSFPSF----CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 +P+S CP C + ++++ A RCT C AQ + + HF SR A Sbjct: 445 RPYSILEATKGLCPACGNPIMKEEGK------VAWRCTNF-TCPAQAVTGITHFCSRSAL 497 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT--KIENILGFGDVSVTNLY 539 ++E +G + S D+F+L Q + E +G+ + Sbjct: 498 DVESIGSSVAEALRSS----GLASSALDLFSLMPDQLANLNLGTPEEPRRYGEKNARKAL 553 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA------------------ 581 D++ R + LER++ + GI VG +A++LA + ++ A Sbjct: 554 DALQNARGLPLERWLIAFGIPLVGEVVAKALADTHPDLKHVADSPYLRDIVRLDELVEQA 613 Query: 582 ----------QEINNIIAHNNDDWLS-----LIRVP-----------------------L 603 ++ A + + + + Sbjct: 614 AKTNPNTRENKKAVKEGALSAEAVQERHQELMEEIDRLTAPYLATGYLRKNTAKFSYGSE 673 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-----EKNVSSEIENKKLVFTGTL 658 +G A+++ F+ + ++ L + + + + + K V TGTL Sbjct: 674 IGVAAAKSLRSFFASAAGNHTMDVLHRLGINPQSQSYRASLLEIPAGSLSGKTFVITGTL 733 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R ++ + G + +S+ T ++ G+ GSK +KA +LGV +++EE F ++ Sbjct: 734 SH-PRDYFEQLIASHGGKATGAISKSTSCLLAGNGGGSKRDKALKLGVPVISEEDFYKMI 792 >gi|308063596|gb|ADO05483.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Sat464] Length = 656 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 224/711 (31%), Positives = 352/711 (49%), Gaps = 61/711 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE + ++ YY PI+ D+ YD L + P+ ++ N P Sbjct: 3 KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKVYEEKNPNNIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G S K H + SL+ ++N +L+ ++ RI K S F PK+D Sbjct: 60 QKVGAITTNSFNKNPHLMRMWSLDDVFNQNELQAWLQRI-----LKAYPSASFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+ GK V A RG+G GE VSA + I IP + E IE+RGEV ISK Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHA--IAYNEEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRNAASG LR+++ R L F G+GK + Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQIDSEITKKRKLQFIPWGVGK-HSLNFSSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R +DG+V V+E ++QK+ Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+IT ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + + R P C Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LAKY L+ ++ + + G +A+++V Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N + +L ++P + ++ SS +K +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMTEEKQENSSVFNHKTIVLTGTLSK-PRQEYAQMLE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA +S+ +S KTD +IVG+N GSKL AQ+ GV ++NEE+ L L++++ Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD 656 >gi|148546832|ref|YP_001266934.1| NAD-dependent DNA ligase LigA [Pseudomonas putida F1] gi|190359274|sp|A5W0U0|DNLJ_PSEP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148510890|gb|ABQ77750.1| DNA ligase, NAD-dependent [Pseudomonas putida F1] Length = 776 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 223/646 (34%), Positives = 344/646 (53%), Gaps = 48/646 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + L E+ H+ YY +P + D+EYD L A+ P L P+ P Sbjct: 3 AETRILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + +V H +P LSL + DLR+F R+ + ++ ++ EPK+DG Sbjct: 60 RVGGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVEGLDQP--GAVDYSCEPKLDG 117 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 +++ Y G+ V A RGDG +GED+SA +R + IP L P ++EVRGEVY+SK Sbjct: 118 LAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVYMSK 177 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 F LN G K +ANPRNAA+G LR+L+ +R L F +G+G+ SE Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQLSESIGDSH 237 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L++++ G P++ ++ A ++YY ++ R++LPY+IDG+V+KV+ + Q++ Sbjct: 238 IGILEQLKAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRE 297 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG RAR PRW I+HKF + T +LD++ Q+GRTG +TPVARL+PV + G ++NATLH Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I L +R+GD V+++RAG+VIP+V+ +++ R DA+P PS C Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPQDARPVEVPSEC 406 Query: 435 PICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+C S+ V R +T A +RC G LAC AQ + + H+VSR A +I+GLG+ Sbjct: 407 PVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ I PAD++ LQ Q + GF +VS L D+I + Sbjct: 467 KSVEQLVDE----GLIGSPADLYKLQFEQVVG------LEGFAEVSTQKLLDAIEASKRP 516 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SL RFI++LGI VG E A+ LA+ S Q + + L +P +G + Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQV----------LTYLPDIGLEV 566 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENK 650 A I F+++ N ++ LL E S+ + Sbjct: 567 AYEIHNFFEDEHNQKVIQQLLDSGMQLQDEGELAAEFAASTTLAGM 612 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 52/255 (20%), Positives = 92/255 (36%), Gaps = 19/255 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R ++ + + D + F + + I+ +L G Sbjct: 537 VLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFF---EDEHNQKVIQQLLDSGMQL 593 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + + +L I L I VG A L S D Sbjct: 594 QDEGELAAEFAASTTLAGMIAKLDIASVGPTGAEKLVAKLDSLDKIIAA------DGIDL 647 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA----LLKEVSPSIGRHEKNVSSEIENK 650 +L A A+ EF+++ N LL + + + Sbjct: 648 RQALAA------KQADAVREFFKDEANQKLARDIEAQLLAFGMHWSSEKKVAEGLPLAGQ 701 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 V TGTL+++ R A++ + LGA V+ +S KT ++ G GSKL KA +LGVK+++ Sbjct: 702 TWVLTGTLERMSRDIAKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKAAELGVKVLD 761 Query: 711 EEQFLFLLQQYNTTL 725 E+ F+ L + + Sbjct: 762 EDAFVTFLAEQGIAV 776 >gi|254234624|ref|ZP_04927947.1| DNA ligase [Pseudomonas aeruginosa C3719] gi|126166555|gb|EAZ52066.1| DNA ligase [Pseudomonas aeruginosa C3719] Length = 794 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 220/650 (33%), Positives = 335/650 (51%), Gaps = 52/650 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + A + ++ L E+ H+ YY +P I D+EYD L R A+ +P L P+ Sbjct: 3 DTQAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLL---TPD 59 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--------N 124 P ++ G + +V H IP LSL + +DL F R+ Sbjct: 60 SPTQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGA 119 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPE 183 + ++ EPK+DG +++ YE+G+ V A RGDG +GED+++ +R I +P L PE Sbjct: 120 EVEYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPE 179 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 I+EVRGEV++SK F ALN + + G K +ANPRNAA+G LR+L+ +R L F +G Sbjct: 180 ILEVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYG 239 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G+ S Q +L+ R G P++ +R YY+++ R L Y+IDG+ Sbjct: 240 FGQVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGV 299 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V+KV+ + Q++LG RAR PRW I+HKF ++ T LL ++ Q+GRTG +TPVARL+PV Sbjct: 300 VFKVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQ 359 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G ++NATLHN D + L +R+GD V+++RAG+VIP+V+ +++ R Sbjct: 360 VAGVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRP 408 Query: 423 PDAQPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 DAQ P CP+C S V R ++ A +RC G L+C AQ + + HFV Sbjct: 409 ADAQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFV 468 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 SR A +I+GLG + ++ + PAD++TL Q + GF ++S Sbjct: 469 SRRAMDIDGLGDKIVEQLVDR----GLVASPADLYTLTYEQVF------ELEGFAELSTN 518 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 NL +I R SL RFIF+LGI VG E A+ LA+ S + + + + Sbjct: 519 NLLAAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEV--------- 569 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL--KEVSPSIGRHEKNVS 644 L +P VG +A I F+ + N + L + E Sbjct: 570 -LTYLPDVGAEVAYEIHNFFADEHNRQVIAQLRDAEHGVQLQEEGEVAAE 618 Score = 186 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 14/199 (7%) Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 G + SL FI L I + A A LA + S + Sbjct: 605 HGVQLQEEGEVAAEFAACASLAGFIDKLNIPFIAATGAEKLASRFGSLDGIIRA------ 658 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS- 645 DWL L +V + + A+++ +F+ P N+ A+EA L+E K V Sbjct: 659 ----DWLDLRQVERLPERAAKSLRDFFDEPANVQRALAIEAQLREFGMHWQSERKAVEGL 714 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 + + V TGTL+ + R A++ + LGA V+ +S KT ++ G GSKL KA +LG Sbjct: 715 PLAGQTWVLTGTLEAMSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELG 774 Query: 706 VKIMNEEQFLFLLQQYNTT 724 VK+++E+ L L ++ Sbjct: 775 VKVLDEDGLLKLFDEHGVA 793 >gi|15596726|ref|NP_250220.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PAO1] gi|107100960|ref|ZP_01364878.1| hypothetical protein PaerPA_01001990 [Pseudomonas aeruginosa PACS2] gi|218892513|ref|YP_002441382.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa LESB58] gi|81541359|sp|Q9I3I4|DNLJ_PSEAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781394|sp|B7UVJ3|DNLJ_PSEA8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|9947487|gb|AAG04918.1|AE004581_5 DNA ligase [Pseudomonas aeruginosa PAO1] gi|218772741|emb|CAW28526.1| DNA ligase [Pseudomonas aeruginosa LESB58] Length = 794 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 220/650 (33%), Positives = 335/650 (51%), Gaps = 52/650 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + A + ++ L E+ H+ YY +P I D+EYD L R A+ +P L P+ Sbjct: 3 DTQAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLL---TPD 59 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--------N 124 P ++ G + +V H IP LSL + +DL F R+ Sbjct: 60 SPTQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGA 119 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPE 183 + ++ EPK+DG +++ YE+G+ V A RGDG +GED+++ +R I +P L PE Sbjct: 120 EVEYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPE 179 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 I+EVRGEV++SK F ALN + + G K +ANPRNAA+G LR+L+ +R L F +G Sbjct: 180 ILEVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYG 239 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G+ S Q +L+ R G P++ +R YY+++ R L Y+IDG+ Sbjct: 240 FGQVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGV 299 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V+KV+ + Q++LG RAR PRW I+HKF ++ T LL ++ Q+GRTG +TPVARL+PV Sbjct: 300 VFKVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQ 359 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G ++NATLHN D + L +R+GD V+++RAG+VIP+V+ +++ R Sbjct: 360 VAGVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRP 408 Query: 423 PDAQPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 DAQ P CP+C S V R ++ A +RC G L+C AQ + + HFV Sbjct: 409 ADAQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFV 468 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 SR A +I+GLG + ++ + PAD++TL Q + GF ++S Sbjct: 469 SRRAMDIDGLGDKIVEQLVDR----GLVASPADLYTLTYEQVF------ELEGFAELSTN 518 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 NL +I R SL RFIF+LGI VG E A+ LA+ S + + + + Sbjct: 519 NLLTAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEV--------- 569 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL--KEVSPSIGRHEKNVS 644 L +P VG +A I F+ + N + L + E Sbjct: 570 -LTYLPDVGAEVAYEIHNFFADEHNRQVIAQLRDAEHGVQLQEEGEVAAE 618 Score = 186 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 14/199 (7%) Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 G + SL FI L I + A A LA + S + Sbjct: 605 HGVQLQEEGEVAAEFAACASLAGFIDKLNIPFIAATGAEKLASRFGSLDGIIRA------ 658 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS- 645 DWL L +V + + A+++ +F+ P N+ A+EA L+E K V Sbjct: 659 ----DWLDLRQVERLPERAAKSLRDFFDEPANVQRALAIEAQLREFGMHWQSERKAVEGL 714 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 + + V TGTL+ + R A++ + LGA V+ +S KT ++ G GSKL KA +LG Sbjct: 715 PLAGQTWVLTGTLEAMSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELG 774 Query: 706 VKIMNEEQFLFLLQQYNTT 724 VK+++E+ L L ++ Sbjct: 775 VKVLDEDGLLKLFDEHGVA 793 >gi|317010835|gb|ADU84582.1| NAD-dependent DNA ligase LigA [Helicobacter pylori SouthAfrica7] Length = 657 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 220/712 (30%), Positives = 352/712 (49%), Gaps = 60/712 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE + ++ YY +PI+ D+ YD L + A P ++ N P Sbjct: 3 KSQKEYLERIEYLNTLSHHYYNLDEPIVSDAVYDELYQELKAYEEENPSYIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G K H + SL+ ++N ++L+ ++ RI + + S F PK+D Sbjct: 60 QKVGATTPNPFNKNPHLMRMWSLDDVFNYDELQTWLQRILKAY-----PSASFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+ GK V A RG+G GE V+ + I IP + IE+RGEV ISK Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVTTNAKHITNIPHA--IAYNGEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRNAASG LR+L+ R L F G+GK + Sbjct: 173 EDFDALNKERLDANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R +DG+V V+E + QK+ Sbjct: 232 KECLDFIVSLGFSAIKHLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNTQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+IT ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAIITKATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + + R P C Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIMRPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+++ I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEAK----LIVNALDLYALKLEDLI------QLDKFKMKKAQNLLDAIQKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LAKY L+ ++ + + G +A+++V Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 FY + N +++L ++P ++ SS +K +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIQSLFDLLNPKNSDIEEKQESSSIFSHKIIVLTGTLSK-PRQEYAQILEN 605 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 LGA +S+ +S KTD +IVG+N GSKL A++ GV ++NEE+ L L++ ++ Sbjct: 606 LGAKISSSVSAKTDFLIVGENAGSKLSLAKKHGVSVLNEEELLKYLKELDSN 657 >gi|86153540|ref|ZP_01071744.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843266|gb|EAQ60477.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni HB93-13] Length = 647 Score = 440 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 206/704 (29%), Positives = 345/704 (49%), Gaps = 60/704 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++E + YY+ +P+ D EYDAL R + P K Sbjct: 3 KEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELSVFEEQN---KDEISKDSPTQK 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 I + K+ H S+E +++ +LR + R F +EPK DG Sbjct: 60 IAPIIQSEFKKIAHLRRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE GK A RGDG GED++ + I IP ++ E IE+RGEV I K+D Sbjct: 112 SLNLLYENGKLASGATRGDGEVGEDITLNVFEIENIP--KNIAYKERIEIRGEVVILKDD 169 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N++ + + +ANPRNAASG LR+L+ + R L F+ G+G + + E Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVG-ENTLNFTKHSE 228 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++Q +R LGF ++ VR ++ Y+E+ ++R P +DG+V +VD+ +L ++LG Sbjct: 229 VMQFIRELGFLKDDFVRLCTNLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELG 288 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + P++M + KF + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I L D+++ D V V R+G+VIPK+ + R S P CP Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 CQS ++ + + C + + + HFVS+ NI+GLG+ ++ +K Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + I TL+ + E + GF + + NL ++I + R L RFI + Sbjct: 449 HK----------KITTLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI H+G A+ L+ + + + + + G+ +A ++ EF Sbjct: 499 LGIEHIGEVAAKKLSLSFG------------KEWHKQSFEAYANLEGFGEQMALSLCEFT 546 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + ++ K ++ I + E I K V TGTL + R + + + +LG Sbjct: 547 RVNHTR--IDEFYKLLNLKIEKLEIKSDGVIFGKTFVITGTLSR-PRDEFKALIEKLGGK 603 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 VS +S+KTD ++ G+ GSKL KA++L VK ++E F L+++ Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCIDESAFNELVKE 647 >gi|283954134|ref|ZP_06371659.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 414] gi|283794413|gb|EFC33157.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 414] Length = 647 Score = 440 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 207/704 (29%), Positives = 347/704 (49%), Gaps = 60/704 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++E + YY+ +P+ D EYDAL R A D + P K Sbjct: 3 KEEYLEKVALANSWMRAYYEKDEPLASDEEYDALIRELRAFEEQNKDEILK---DSPTQK 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 I + K+ H S+E ++ +LR + R + F +EPK DG Sbjct: 60 IAPTVQSEFKKIAHLKRMWSMEDVFGESELRAWAKRAK--------SEKNFFIEPKFDGA 111 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE GK V A RGDG GED++ + I IP ++ E IE+RGEV I K+D Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIP--KNIAYKERIEIRGEVVILKDD 169 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N++ + + +ANPRNAASG LR+L+ + R L F+ G+G + + E Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVG-ENTLNFSKHSE 228 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++Q +R LGF ++ V+ ++ Y E+ ++R P +DG+V +VDE +L K+LG Sbjct: 229 VMQFIRELGFLKDDFVKLCANLDEVLKAYEELLALREKKPMMMDGMVVRVDELALCKELG 288 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + P++M + KF + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVIVKSATLHNF 348 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I L D+++ D V V R+G+VIPK+ + R S P CP Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 CQS ++ + + C + + + HFVS+ NI+GLG+ ++ +K Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + I TL+ + E + GF + + NL ++I + R L FI + Sbjct: 449 HK----------KITTLESIFYLKFSDFEGLEGFKEKKINNLLNAIEQARECELFCFITA 498 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI H+G A+ L+ + + + + + G+ +A ++ EF Sbjct: 499 LGIEHIGEVAAKKLSLSFG------------KDWHKQSFEAYANLEGFGEQMALSLCEFT 546 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + ++ K ++ + + E S I K V TGTL + R + + + +LG Sbjct: 547 RVNHIR--IDEFYKLLNLKVEKLEVKSDSAIFGKTFVITGTLSR-PRDEFKALIEKLGGK 603 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 V+ +S+K+D ++ G+ GSKL KA++LGV ++E F L+++ Sbjct: 604 VNGSVSKKSDYVLFGEEAGSKLSKAKELGVNCIDESAFNELIKE 647 >gi|283955998|ref|ZP_06373487.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 1336] gi|283792474|gb|EFC31254.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 1336] Length = 647 Score = 440 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 207/704 (29%), Positives = 345/704 (49%), Gaps = 60/704 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++E + YY+ +P+ D EYDAL R + P K Sbjct: 3 KEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRVFEEQN---KDEISKDSPTQK 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 I + K+ H S+E +++ +LR + R F +EPK DG Sbjct: 60 IAPIIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE GK V A RGDG GED++ + I IP ++ E IE+RGEV I K+D Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIP--KNIAYKERIEIRGEVVILKDD 169 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N++ + + +ANPRNAASG LR+L+ + R L F+ G+G + + E Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVG-ENTLNFTKHSE 228 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++Q +R LGF ++ VR ++ Y+E+ ++R P +DG+V +VD+ L ++LG Sbjct: 229 VMQFIRELGFLKDDFVRLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLELCEELG 288 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + P++M + KF + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I L D+++ D V V R+G+VIPK+ + R P CP Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEILRPKLCPT 397 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 CQS ++ + + C + + + HFVS+ NI+GLG+ ++ +K Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + I TL+ + E + GF + + NL ++I + R L RFI + Sbjct: 449 HK----------KITTLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI H+G A+ L+ + + + + + G+ +A ++ EF Sbjct: 499 LGIDHIGEVAAKKLSLSFN------------KEWHKQSFEAYANLEGFGEQMALSLCEFT 546 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + ++ K ++ I + E S I K V TGTL + R + + + +LG Sbjct: 547 RVNHTR--IDEFYKLLNLKIEKLEIKSDSVIFGKTFVITGTLSR-PRDEFKALIEKLGGK 603 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 VS +S+KTD ++ G+ GSKL KA++L VK ++E F L+++ Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCIDESAFNELVKE 647 >gi|170781460|ref|YP_001709792.1| NAD-dependent DNA ligase LigA [Clavibacter michiganensis subsp. sepedonicus] gi|190359244|sp|B0RGA7|DNLJ_CLAMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169156028|emb|CAQ01163.1| DNA ligase [Clavibacter michiganensis subsp. sepedonicus] Length = 847 Score = 440 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 212/794 (26%), Positives = 345/794 (43%), Gaps = 115/794 (14%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +E A + L EI H D YY + + D+EYDAL+R AI A P L + Sbjct: 22 DLEAASARVDELRAEIERHRDAYYGETGGTVSDAEYDALERELRAIEDAHPTL---RSQD 78 Query: 73 GPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P +GG + VTH+ LSL+ +++ E+L ++ ++ R + + + E Sbjct: 79 SPTQTVGGRAETTLFAPVTHAERMLSLDNVFSEEELAEWAAKVERDAGR---GRVRYLSE 135 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 KIDG I +RYE G V AA RGDG GEDV+ + + T+P L+ + P ++EVRGE Sbjct: 136 LKIDGLAINLRYEHGVLVTAATRGDGVVGEDVTQNVLTMGTVPERLAGSGHPPLVEVRGE 195 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN----------PTDITRYLNFFV 240 ++ +F LN + VG + +ANPRNAA+G LR+ R L V Sbjct: 196 IFFPVAEFDELNARQLEVGERVFANPRNAAAGSLRQKEEGKSPARLELMHARIRRLRMLV 255 Query: 241 HGLGKTS------EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 HG+G + Q E+ + G P++ R + + + + R+ Sbjct: 256 HGIGAWPVRELERDAHVSAQSEVYGLLEAWGLPISTHFRVFDDIAEVAGFVRRQGADRAA 315 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 + + IDG+V KVD+ L ++LG +R+PRW ++K+ ++ +T LLDI + +GRTG TP Sbjct: 316 VEHQIDGIVVKVDDLGLHEELGATSRAPRWATAYKYPPEEVNTTLLDIVVSVGRTGRATP 375 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 A +E V + G+ + ATLHN+ +K + + +GD V++++AG+VIP+V+ Sbjct: 376 FAVMEKVEVAGSEVRQATLHNQQVVK-----------AKGVLIGDTVVLRKAGDVIPEVL 424 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 +V R F P+ CP CQ+ + + RC +C AQ R++H Sbjct: 425 GPVVELRTGKEHEFVMPTLCPECQTPLK-----PAKEGDIDLRCPNARSCPAQVRGRVEH 479 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDP------------------------------AFSI 504 SR A +IEGLG+ + +P + Sbjct: 480 VASRGALDIEGLGEVAAAALTQPLEPEDPPLETEAGLFELTMADLVPITVVVRDAETGMV 539 Query: 505 R-----------IPADIFTLQRRQ--QTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + P + +R + S L +++ K + L Sbjct: 540 KVDEKTGEAKRVTPFRRKRVLKRDGAFDPAEPWGDEASVPSKSAEVLLENLEKAKTQDLW 599 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R + +L IRHVG AR+LA ++ S L V VG IIA A Sbjct: 600 RILVALSIRHVGPVAARALAGWFGSLDVIRAA----------SREELAAVDGVGGIIADA 649 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGR--------------HEKNVSSEIENKKLVFTGT 657 ++++++ + V K + TG+ Sbjct: 650 LLDWFEVDWHREIVARWEKAGVVTAVPGHPGPGAAAAAGGVLAGLAVVA--------TGS 701 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L+ R A E + G + +S+KT + G GSKL KA+ LGV+I++ +F L Sbjct: 702 LEGYTREGALEAIMAAGGKAGSSVSKKTHYVAAGPGAGSKLGKAEALGVRIIDAAEFRLL 761 Query: 718 LQQYNTTLRIHDDD 731 ++Q + + + D Sbjct: 762 VEQGPDAIALPEAD 775 >gi|148925946|ref|ZP_01809633.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8486] gi|145844932|gb|EDK22036.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8486] Length = 647 Score = 440 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 209/704 (29%), Positives = 347/704 (49%), Gaps = 60/704 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++E + YY+ +P+ D EYDAL R + P K Sbjct: 3 KEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELSVFEEQN---KDEISKDSPTQK 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 I + K+ H S+E +++ +LR + R F +EPK DG Sbjct: 60 IAPIIQSEFKKIAHLRRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE GK V A RGDG GED++ + I IP ++ E IE+RGEV I K+D Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIP--KNIAYKERIEIRGEVVILKDD 169 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N++ + + +ANPRNAASG LR+L+ + R L F+ G+G + + E Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVG-ENTLNFTKHSE 228 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++Q +R LGF ++ VR ++ Y+E+ ++R P +DG+V +VD+ +L ++LG Sbjct: 229 VMQFIRELGFLKDDFVRLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELG 288 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + P++M + KF + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I L D+++ D V V R+G+VIPK+ + R S P CP Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 CQS ++ + + C + + + HFVS+ NI+GLG+ ++ +K Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + I TL+ + E + GF + + NL ++I + R L RFI + Sbjct: 449 HK----------KITTLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI H+G A+ L+ + + + + + G+ +A ++ EF Sbjct: 499 LGIEHIGEVAAKKLSLSFG------------KEWHKQSFEAYANLEGFGEQMALSLCEFT 546 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + ++ K ++ I + E S I K V TGTL + R + + + +LG Sbjct: 547 RVNHTR--IDEFYKLLNLKIEKLEIKSDSMIFGKTFVITGTLSR-PRDEFKALIEKLGGK 603 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 VS +S+KTD ++ G+ GSKL KA++L VK +NE F L+++ Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCINESAFNELVKE 647 >gi|167034833|ref|YP_001670064.1| NAD-dependent DNA ligase LigA [Pseudomonas putida GB-1] gi|190359275|sp|B0KPX3|DNLJ_PSEPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166861321|gb|ABY99728.1| DNA ligase, NAD-dependent [Pseudomonas putida GB-1] Length = 776 Score = 440 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 224/646 (34%), Positives = 344/646 (53%), Gaps = 48/646 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + L E+ H+ YY +P + D+EYD L A+ P L P+ P Sbjct: 3 AETRIHELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GGE + +V H +P LSL + DLR+F R+ + ++ ++ +PK+DG Sbjct: 60 RVGGEALSAFSQVRHEVPMLSLGNAFEETDLREFGRRVVEGLDQP--GAVDYSCKPKLDG 117 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 +++ Y G+ V A RGDG +GED+SA +R + IP L P ++EVRGEVY+SK Sbjct: 118 LAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGEGWPAVLEVRGEVYMSK 177 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 F LN G K +ANPRNAA+G LR+L+ +R L F +G+G+ SE Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSESIGDSH 237 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L++++ G P++ +R A ++YY ++ R++LPY+IDG+V+KV+ + Q++ Sbjct: 238 IGVLEQLKAWGMPISRELRHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNNLAAQRE 297 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG RAR PRW I+HKF + T +LD++ Q+GRTG +TPVARL+PV + G ++NATLH Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I L +R+GD V+++RAG+VIP+V+ +++ R DA+P PS C Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPDDARPVEVPSAC 406 Query: 435 PICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+C S+ V R +T A +RC G LAC AQ + + H+VSR A +I+GLG+ Sbjct: 407 PVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ I PAD++ L Q + GF +VS L D+I + Sbjct: 467 KSVEQLVDE----GLIGSPADLYKLAFEQIVG------LEGFAEVSSKKLLDAIEASKRP 516 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SL RFI++LGI VG E A+ LA+ S Q + + L +P +G + Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQV----------LTYLPDIGLEV 566 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENK 650 A I F+++ N +E LL E S+ + Sbjct: 567 AYEIHNFFEDEHNQKVIEQLLASGMKLQDEGELAAEFAASTTLAGM 612 Score = 174 bits (441), Expect = 5e-41, Method: Composition-based stats. Identities = 53/255 (20%), Positives = 93/255 (36%), Gaps = 19/255 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R ++ + + D + F + + IE +L G Sbjct: 537 VLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFF---EDEHNQKVIEQLLASGMKL 593 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + + +L I L I VG A L S + D Sbjct: 594 QDEGELAAEFAASTTLAGMIAKLDIASVGPTGAEKLVAKLDSLEKIIAA------DGIDL 647 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA----LLKEVSPSIGRHEKNVSSEIENK 650 +L A A+ EF+++ N LL + + + Sbjct: 648 RQALAA------KQADAVREFFKDEANQKLARDIEAQLLAFGMHWSCEKKVAEGLPLAGQ 701 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 V TGTL+++ R A++ + LGA V+ +S KT ++ G GSKL KA +LGVK+++ Sbjct: 702 TWVLTGTLERMSRDIAKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKASELGVKVLD 761 Query: 711 EEQFLFLLQQYNTTL 725 E+ F+ L + + Sbjct: 762 EDAFVTFLAEQGIVV 776 >gi|317181928|dbj|BAJ59712.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F57] Length = 656 Score = 440 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 224/711 (31%), Positives = 353/711 (49%), Gaps = 61/711 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE + ++ YY PI+ D+ YD L + A P+ +S N P Sbjct: 3 KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQS---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G S K H + SL+ ++N +L+ ++ RI + + S F PK+D Sbjct: 60 QKVGAITPNSFNKNPHLMRMWSLDDVFNQNELQTWLQRILKAY-----PSASFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+ GK V A RG+G GE VS + I IP + IE+RGEV ISK Sbjct: 115 GVSLNLLYQHGKLVSATTRGNGLEGELVSTNAKHIANIPHA--IAYNGEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRNAASG LR+L+ R L F G+GK + Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R +DG+V V+E ++QK+ Sbjct: 232 KECLDFIVSLGFNSIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+IT ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + + R P C Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKIC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAILKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LAKY L+ ++ + + G +A+++V Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N + +L ++P + + ++ SS +K +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAKEKQESSSVFSHKTIVLTGTLSK-PRQEYAQMLE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA +S+ +S KTD +IVG+N GSKL AQ+ GV ++NEE+ L L++++ Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKHLKEFD 656 >gi|332673586|gb|AEE70403.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 83] Length = 656 Score = 440 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 223/711 (31%), Positives = 353/711 (49%), Gaps = 61/711 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE + ++ YY PI+ D+ YD L + A P+ ++ N P Sbjct: 3 KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G S K +H + SL+ ++N +L+ ++ RI + + + F PK+D Sbjct: 60 QKVGAITPNSFNKNSHLMRMWSLDDVFNQNELQAWLQRILKAY-----PNASFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+ GK V A RG+G GE VSA + I IP + E IE+RGEV ISK Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHA--IAYNEEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRR-LNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRN ASG LR+ + R L F G+GK + Sbjct: 173 KDFDALNKERLNANEPLFANPRNTASGSLRQLGSKITKKRKLQFIPWGVGK-HSLNFLSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R +DG+V V+E ++QK+ Sbjct: 232 KECLDFIVSLGFSSIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+IT ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + + R P C Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAILKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LAKY L+ ++ + + G +A+++V Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N + +L ++P + + ++ SS NK +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMTKEKQKSSSVFNNKTIVLTGTLSK-PRQEYAQMLE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA +S+ +S KTD +IVG+N GSKL AQ+ GV ++NEE+ L L+ ++ Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKGFD 656 >gi|26990965|ref|NP_746390.1| NAD-dependent DNA ligase LigA [Pseudomonas putida KT2440] gi|81439923|sp|Q88F25|DNLJ_PSEPK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|24985989|gb|AAN69854.1|AE016624_5 DNA ligase, NAD-dependent [Pseudomonas putida KT2440] Length = 776 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 222/646 (34%), Positives = 343/646 (53%), Gaps = 48/646 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + L E+ H+ YY +P + D+EYD L A+ P L P+ P Sbjct: 3 AETRILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + +V H +P LSL + DLR+F R+ + ++ ++ EPK+DG Sbjct: 60 RVGGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVEGLDQP--GAVDYSCEPKLDG 117 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 +++ Y G+ V A RGDG +GED+SA +R + IP L P ++EVRGEVY+SK Sbjct: 118 LAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVYMSK 177 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 F LN G K +ANPRNAA+G LR+L+ +R L F +G+G+ SE Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSESIGDSH 237 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L++++ G P++ ++ A ++YY ++ R++LPY+IDG+V+KV+ + Q++ Sbjct: 238 IGILEQLKAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRE 297 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG RAR PRW I+HKF + T +LD++ Q+GRTG +TPVARL+PV + G ++NATLH Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I L +R+GD V+++RAG+VIP+V+ +++ R A+P PS C Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPQGARPVEVPSAC 406 Query: 435 PICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+C S+ V R +T A +RC G LAC AQ + + H+VSR A +I+GLG+ Sbjct: 407 PVCGSQVERTRLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ I PAD++ LQ Q + GF +VS L D+I + Sbjct: 467 KSVEQLVDE----GLIGSPADLYKLQFEQVVG------LEGFAEVSTQKLLDAIEASKRP 516 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SL RFI++LGI VG E A+ LA+ S Q + + L +P +G + Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQV----------LTYLPDIGLEV 566 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENK 650 A I F+++ N ++ LL E S+ + Sbjct: 567 AYEIHNFFEDEHNQKVIQQLLDSGMQLQDEGELAAEFAASTTLAGM 612 Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats. Identities = 52/255 (20%), Positives = 92/255 (36%), Gaps = 19/255 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R ++ + + D + F + + I+ +L G Sbjct: 537 VLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFF---EDEHNQKVIQQLLDSGMQL 593 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + + +L I L I VG A L S D Sbjct: 594 QDEGELAAEFAASTTLAGMIAKLDIASVGPTGAEKLVARLDSLDKIIAA------DGIDL 647 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA----LLKEVSPSIGRHEKNVSSEIENK 650 +L A A+ EF+++ N LL + + + Sbjct: 648 RQALAA------KQADAVREFFKDEANQKLARDIEAQLLAFGMHWSSEKKVAEGLPLAGQ 701 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 V TGTL+++ R A++ + LGA V+ +S KT ++ G GSKL KA +LGVK+++ Sbjct: 702 TWVLTGTLERMSRDIAKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKAAELGVKVLD 761 Query: 711 EEQFLFLLQQYNTTL 725 E+ F+ L + + Sbjct: 762 EDAFVTFLAEQGIAV 776 >gi|315606212|ref|ZP_07881239.1| DNA ligase [Actinomyces sp. oral taxon 180 str. F0310] gi|315312100|gb|EFU60190.1| DNA ligase [Actinomyces sp. oral taxon 180 str. F0310] Length = 777 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 205/798 (25%), Positives = 349/798 (43%), Gaps = 113/798 (14%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 ++P+ + E RK L + I YY P I D++YD + R + I +P L Sbjct: 1 MVPMSDPTFETTRKRYDELVRSIEEARAAYYDRDSPTISDADYDRMYRELEEIEERYPQL 60 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 + + P +GG ++ S +V H +SL+ ++++E+L + RI D Sbjct: 61 RGA---DSPTMSVGGSVDSSFTEVRHLAQMMSLDDVFSLEELAGWEARISEATGIVDP-- 115 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 T E K+DG I + YE+G+ V AA RGDG+ GED++A R I +IP+ L+ +P I Sbjct: 116 -PMTTEVKVDGLSINLLYEEGRLVRAATRGDGYVGEDITANARTIASIPQTLTGPVPRRI 174 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG 244 EVRGEVY DF A N+ +A G K + N RNAA+G LR+ +P + R L HG+G Sbjct: 175 EVRGEVYFPVADFAAFNEARVAAGEKAFVNARNAAAGSLRQKDPAETAKRPLAMVAHGIG 234 Query: 245 KTS----EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 Q +++R G PV+ R I ++ + R +L ++ID Sbjct: 235 FVEAGEGFAEPTTQQGWYEQLRDWGLPVSPYTRLLTGRKAIEERIEQIGAQRHSLDHEID 294 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V K+++ +LQ+ LG +R+PRW ++KF ++ TRLLDI +Q+GRTG +TP +E Sbjct: 295 GVVVKINDLALQRSLGSTSRAPRWAAAYKFPPEEVHTRLLDIRVQVGRTGRVTPYGVMES 354 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V + G+ ++ ATLHN + + + +GD V++++AG+VIP++V +++ Sbjct: 355 VLVAGSNVSRATLHNAQEVAR-----------KGVLIGDLVVLRKAGDVIPEIVAPVMDA 403 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R+ +PF PS CP C + +V++ + RC AC AQ ERL H +R A Sbjct: 404 RNGSERPFVMPSECPSCATPLVQE-----KEGDVDLRCPNKGACPAQITERLAHVGARSA 458 Query: 481 FNIEGLGKQQLDFFFKSEDP---------------------------------------- 500 ++EGLG + + E+ Sbjct: 459 LDVEGLGDESALAMTQPENDRDEVAAALVAGRSVTLEDGTVLTLEGARELPHGEQITRAE 518 Query: 501 -------AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 A + A +F L+ + + G+ + + + Sbjct: 519 ALLPAPQAPVLTSEAVLFDLRAEDLRDVMVWKPVKNKGEKTGDWRQVRYFWTKAYKPRKL 578 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 V ++ + E++ L + + VG A+A+ Sbjct: 579 RGQTVYEPVETSASKG-------TEKMLAELDKAKNQPLARVLVALSIRHVGPTAARALA 631 Query: 614 EFYQN--------------------------------PRNICAVEALLKEVSPSIGRHEK 641 + +++ ++ +EA + + Sbjct: 632 DAFRSMDALRAASLEELSAVEGVGEEIGRSLRDWFTVDWHLAVLEAWARAGVRMADEERE 691 Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701 VS + +V +G + R A+E +T G + +S+KT +++ G GSK KA Sbjct: 692 AVSDVLAGLTIVVSGAMPGYDREGAKEAITSRGGKAAGSVSKKTSLVVAGPGAGSKAAKA 751 Query: 702 QQLGVKIMNEEQFLFLLQ 719 + LGV ++ E+QF LL+ Sbjct: 752 EALGVPVITEQQFADLLE 769 >gi|34558095|ref|NP_907910.1| NAD-dependent DNA ligase LigA [Wolinella succinogenes DSM 1740] gi|81653397|sp|Q7M8A0|DNLJ_WOLSU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|34483813|emb|CAE10810.1| DNA LIGASE POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+] [Wolinella succinogenes] Length = 650 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 232/719 (32%), Positives = 357/719 (49%), Gaps = 81/719 (11%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ +Q + + L + YY P+ D EYD L A P+ P Sbjct: 1 MNPDQYSQAIERL----NAWAHAYYVLDAPLATDEEYDQLYHEALAFERQNPERIH---P 53 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P +IGG K +H SLE +++ +L+ + R+Y+ F + Sbjct: 54 ASPTQRIGGAPLEGFQKASHLERMWSLEDVFDFGELKSWAERLYK-----QFPHATFVCD 108 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK DG + + YE+G+ V AA RGDG GEDV+ R IP+IP LS+ + E IE+RGEV Sbjct: 109 PKFDGASLNLLYEEGRLVRAATRGDGLIGEDVTQNARTIPSIP--LSIPLLERIEIRGEV 166 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 I K DF L +E + P+ANPRNAA+G LR+L+P R L F G+G Sbjct: 167 VIPKEDFEKLQEERLRENESPFANPRNAAAGSLRQLDPAITAKRKLRFIPWGVG-AHPFK 225 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +E+++ + GF + + + H I Y + S RST P +DG+V +VDE + Sbjct: 226 TGSFFEIMKSLESYGFIRSPERTRCHNIHEIERVYALLVSERSTHPVMLDGMVVRVDEIA 285 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG ++PR+ ++KF + RLL I +Q+GR+G++TPVA LEPV I GA+I+ Sbjct: 286 YQRELGYTIKAPRFACAYKFPAIEKKARLLSITLQVGRSGVVTPVANLEPVEIEGAMISR 345 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D IK L D+R GD V + R+G+VIPK++ + R + +P S Sbjct: 346 ATLHNFDEIKRL-----------DVREGDWVSLIRSGDVIPKIIQPFAHLRSGEEKPLSR 394 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S ++ + L+C A+ L HF S+ A NI+GLG++ Sbjct: 395 PTHCPECGSELLVEE---------VLIKCQNLSCPARIKNSLIHFASKKALNIDGLGEKI 445 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F+ A I+ D+F+L + + ++ GF + NL D+I R L Sbjct: 446 IEQLFE----AGLIKEFEDLFSLTKE------SLLSLEGFKEKKAQNLLDAIQGVRGCDL 495 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFI +LGI H+G A+ L+ + +A + + ++I + G+ +AQ Sbjct: 496 WRFINALGIEHIGEGAAKKLSHAFG------------LAFHLQNHEAIIGLEGFGEEMAQ 543 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +++EF + +E LL + P S I K V TGTL R E + Sbjct: 544 SLLEFCRVNHER--IEHLLGLIEPLAPIQLTPQDSPIAGKSFVITGTLSA-PREHFVELL 600 Query: 671 TQLGA----------VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 T LGA D ++ G++ GSKLEKA++LGV+ +NEE+ +L+ Sbjct: 601 TSLGAKVVSSVSKKS----------DFLLYGESAGSKLEKARELGVRCVNEEELGEILE 649 >gi|168186072|ref|ZP_02620707.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund] gi|169295952|gb|EDS78085.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund] Length = 664 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 198/713 (27%), Positives = 350/713 (49%), Gaps = 58/713 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E + + L +E++ YY P + D +YD + + P Sbjct: 1 MEDKKLLIYELVEELNKLAYEYYVLDNPSVSDKDYDKKYDKLVELEKE----TGLVLPYS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127 P ++G + K TH SL K +++++ + + + + + I Sbjct: 57 PTQRVGDVVLSKFNKYTHKGKLWSLGKAQSLKEVEDWHNKNVKVVNEYNLTHEDKLPPIK 116 Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 + + K DG I Y E G V AA RG G GE+++A + I TIP + +IE Sbjct: 117 YIVTKKFDGLTINCTYNEDGILVTAATRGTGEIGEEITAQAKTIKTIPLKMDN--HAVIE 174 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245 V GE ++K F N + P N RN A+G LR LN + R L+ F + +G Sbjct: 175 VHGEAIMTKEAFEEYNKVAV----VPLKNLRNGAAGALRNLNVKETARRNLSAFFYDIGY 230 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 K EML+ ++ G P+++ Q +T I N ++ IR L YDIDG V Sbjct: 231 NEGTPFKTYSEMLKFIKEHGIPMDDYAEQCSTVEEIEKEINYIEEIRDKLNYDIDGAVIA 290 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ ++ LG + P+W +++KF ++A+T+LL+++ +GR+G +TP A LEPV IGG Sbjct: 291 VDDMRTRELLGYTVKFPKWALAYKFEAQEATTKLLEVEWNVGRSGRVTPTAILEPVEIGG 350 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + ATL+N D I+ + +++G V ++R+ +VIP+++ ++ A Sbjct: 351 VTVKRATLNNMDDIER-----------KGVKLGSTVFLRRSNDVIPEIMGVVEES-LEGA 398 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + P+ CP C S +V++ + C L+C Q ++ + HF SR+A NI G Sbjct: 399 KDIKSPTTCPYCGSEIVQE--------GVHYFCENTLSCKPQLVKSIVHFGSREAMNIAG 450 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 ++ + F+ D I+ +D++ +++ + FG+ NL D+I Sbjct: 451 FSEKTAEQLFEELD----IKSISDLYRIKKEDL------LKLNRFGEKKAQNLIDAIENS 500 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 ++ L FI++LGI +VG + + L K + + N + L+ V +G Sbjct: 501 KDCDLPSFIYALGIPNVGKKTSTDLCKKFKTLDNLKEA----------KIEELVSVEDIG 550 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 DI+AQ++++F+ + + +++ LL + E+ + K +V TG+L R++ Sbjct: 551 DIVAQSVLDFFNDDTILKSIDELLSLGVIPKFKEEEIEENIFNGKTVVVTGSLSSFSRNE 610 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +E + LGA V+ +S+KTD ++VG +PGSK EKA QL +KI++E++F ++ Sbjct: 611 IKEKLQSLGAKVAGSVSKKTDYVLVGKDPGSKYEKAVQLNIKIISEDEFKNMI 663 >gi|254239878|ref|ZP_04933200.1| DNA ligase [Pseudomonas aeruginosa 2192] gi|126193256|gb|EAZ57319.1| DNA ligase [Pseudomonas aeruginosa 2192] Length = 794 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 220/650 (33%), Positives = 334/650 (51%), Gaps = 52/650 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + A + ++ L E+ H+ YY +P I D+EYD L R A+ +P L P+ Sbjct: 3 DTQAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLL---TPD 59 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--------N 124 P ++ G + +V H IP LSL + +DL F R+ Sbjct: 60 SPTQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGA 119 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPE 183 + ++ EPK+DG +++ YE+G+ V A RGDG +GED+++ +R I +P L PE Sbjct: 120 EVEYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPE 179 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 I+EVRGEV++SK F ALN + + G K +ANPRNAA+G LR+L+ +R L F +G Sbjct: 180 ILEVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYG 239 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G+ S Q +L+ R G P++ +R YY+++ R L Y+IDG+ Sbjct: 240 FGQVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGV 299 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V+KV+ + Q++LG RAR PRW I+HKF ++ T LL ++ Q+GRTG +TPVARL+PV Sbjct: 300 VFKVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQ 359 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G + NATLHN D + L +R+GD V+++RAG+VIP+V+ +++ R Sbjct: 360 VAGVTVFNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRP 408 Query: 423 PDAQPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 DAQ P CP+C S V R ++ A +RC G L+C AQ + + HFV Sbjct: 409 ADAQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFV 468 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 SR A +I+GLG + ++ + PAD++TL Q + GF ++S Sbjct: 469 SRRAMDIDGLGDKIVEQLVDR----GLVASPADLYTLTYEQVF------ELEGFAELSTN 518 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 NL +I R SL RFIF+LGI VG E A+ LA+ S + + + + Sbjct: 519 NLLTAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEV--------- 569 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL--KEVSPSIGRHEKNVS 644 L +P VG +A I F+ + N + L + E Sbjct: 570 -LTYLPDVGAEVAYEIHNFFADEHNRQVIAQLRDAEHGVQLQEEGEVAAE 618 Score = 186 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 14/199 (7%) Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 G + SL FI L I + A A LA + S + Sbjct: 605 HGVQLQEEGEVAAEFAACASLAGFIDKLNIPFIAATGAEKLASRFGSLDGIIRA------ 658 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS- 645 DWL L +V + + A+++ +F+ P N+ A+EA L+E K V Sbjct: 659 ----DWLDLRQVERLPERAAKSLRDFFDEPANVQRALAIEAQLREFGMHWQSERKAVEGL 714 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 + + V TGTL+ + R A++ + LGA V+ +S KT ++ G GSKL KA +LG Sbjct: 715 PLAGQTWVLTGTLEAMSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELG 774 Query: 706 VKIMNEEQFLFLLQQYNTT 724 VK+++E+ L L ++ Sbjct: 775 VKVLDEDGLLKLFDEHGVA 793 >gi|116049473|ref|YP_791724.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa UCBPP-PA14] gi|122258581|sp|Q02K12|DNLJ_PSEAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|115584694|gb|ABJ10709.1| DNA ligase [Pseudomonas aeruginosa UCBPP-PA14] Length = 794 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 220/650 (33%), Positives = 335/650 (51%), Gaps = 52/650 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + A + ++ L E+ H+ YY +P I D+EYD L R A+ +P L P+ Sbjct: 3 DTQAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLL---TPD 59 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--------N 124 P ++ G + +V H IP LSL + +DL F R+ Sbjct: 60 SPTQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGA 119 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPE 183 + ++ EPK+DG +++ YE+G+ V A RGDG +GED+++ +R I +P L PE Sbjct: 120 EVEYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPE 179 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 I+EVRGEV++SK F ALN + + G K +ANPRNAA+G LR+L+ +R L F +G Sbjct: 180 ILEVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYG 239 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G+ S Q +L+ R G P++ +R YY+++ R L Y+IDG+ Sbjct: 240 FGQVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGV 299 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V+KV+ + Q++LG RAR PRW I+HKF ++ T LL ++ Q+GRTG +TPVARL+PV Sbjct: 300 VFKVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQ 359 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G ++NATLHN D + L +R+GD V+++RAG+VIP+V+ +++ R Sbjct: 360 VAGVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRP 408 Query: 423 PDAQPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 DAQ P CP+C S V R ++ A +RC G L+C AQ + + HFV Sbjct: 409 ADAQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFV 468 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 SR A +I+GLG + ++ + PAD++TL Q + GF ++S Sbjct: 469 SRRAMDIDGLGDKIVEQLVDR----GLVASPADLYTLTYEQVF------ELEGFAELSTN 518 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 NL +I R SL RFIF+LGI VG E A+ LA+ S + + + + Sbjct: 519 NLLAAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEV--------- 569 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL--KEVSPSIGRHEKNVS 644 L +P VG +A I F+ + N + L + E Sbjct: 570 -LTYLPDVGAEVAYEIHNFFADEHNRQVIAQLRDAEHGVQLQEEGEVAAE 618 Score = 186 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 14/199 (7%) Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 G + SL FI L I + A A LA + S + Sbjct: 605 HGVQLQEEGEVAAEFAACASLAGFIDKLNIPFIAATGAEKLASRFGSLDGIIRA------ 658 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS- 645 DWL L +V + + A+++ +F+ P N+ A+EA L+E K V Sbjct: 659 ----DWLDLRQVERLPERAAKSLRDFFDEPANVQRALAIEAQLREFGMHWQSERKAVEGL 714 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 + + V TGTL+ + R A++ + LGA V+ +S KT ++ G GSKL KA +LG Sbjct: 715 PLAGQTWVLTGTLEAMSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELG 774 Query: 706 VKIMNEEQFLFLLQQYNTT 724 VK+++E+ L L ++ Sbjct: 775 VKVLDEDGLLKLFDEHGVA 793 >gi|296390104|ref|ZP_06879579.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PAb1] Length = 794 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 219/650 (33%), Positives = 335/650 (51%), Gaps = 52/650 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + A + ++ L E+ H+ YY +P I D+EYD L R A+ +P L P+ Sbjct: 3 DTQAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLL---TPD 59 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--------N 124 P ++ G + +V H IP LSL + +DL F R+ Sbjct: 60 SPTQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGA 119 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPE 183 + ++ EPK+DG +++ YE+G+ V A RGDG +GED+++ +R I +P L P+ Sbjct: 120 EVEYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPD 179 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 I+EVRGEV++SK F ALN + + G K +ANPRNAA+G LR+L+ +R L F +G Sbjct: 180 ILEVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYG 239 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G+ S Q +L+ R G P++ +R YY+++ R L Y+IDG+ Sbjct: 240 FGQVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGV 299 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V+KV+ + Q++LG RAR PRW I+HKF ++ T LL ++ Q+GRTG +TPVARL+PV Sbjct: 300 VFKVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQ 359 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G ++NATLHN D + L +R+GD V+++RAG+VIP+V+ +++ R Sbjct: 360 VAGVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRP 408 Query: 423 PDAQPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 DAQ P CP+C S V R ++ A +RC G L+C AQ + + HFV Sbjct: 409 ADAQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFV 468 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 SR A +I+GLG + ++ + PAD++TL Q + GF ++S Sbjct: 469 SRRAMDIDGLGDKIVEQLVDR----GLVASPADLYTLTYEQVF------ELEGFAELSTN 518 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 NL +I R SL RFIF+LGI VG E A+ LA+ S + + + + Sbjct: 519 NLLAAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEV--------- 569 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL--KEVSPSIGRHEKNVS 644 L +P VG +A I F+ + N + L + E Sbjct: 570 -LTYLPDVGAEVAYEIHNFFADEHNRQVIAQLRDAEHGVQLQEEGEVAAE 618 Score = 186 bits (472), Expect = 1e-44, Method: Composition-based stats. Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 14/199 (7%) Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 G + SL FI L I + A A LA + S + Sbjct: 605 HGVQLQEEGEVAAEFAACASLAGFIDKLNIPFIAATGAEKLASRFGSLDGIIRA------ 658 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS- 645 DWL L +V + + A+++ +F+ P N+ A+EA L+E K V Sbjct: 659 ----DWLDLRQVERLPERAAKSLRDFFDEPANVQRALAIEAQLREFGMHWQSERKAVEGL 714 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 + + V TGTL+ + R A++ + LGA V+ +S KT ++ G GSKL KA +LG Sbjct: 715 PLAGQTWVLTGTLEAMSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELG 774 Query: 706 VKIMNEEQFLFLLQQYNTT 724 VK+++E+ L L ++ Sbjct: 775 VKVLDEDGLLKLFDEHGVA 793 >gi|313497885|gb|ADR59251.1| LigA [Pseudomonas putida BIRD-1] Length = 776 Score = 439 bits (1128), Expect = e-120, Method: Composition-based stats. Identities = 223/646 (34%), Positives = 344/646 (53%), Gaps = 48/646 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + L E+ H+ YY +P + D+EYD L A+ P L P+ P Sbjct: 3 AETRILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + +V H +P LSL + DLR+F R+ + ++ ++ EPK+DG Sbjct: 60 RVGGAAMAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVEGLDQP--GAVDYSCEPKLDG 117 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 +++ Y G+ V A RGDG +GED+SA +R + IP L P ++EVRGEVY+SK Sbjct: 118 LAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVYMSK 177 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 F LN G K +ANPRNAA+G LR+L+ +R L F +G+G+ SE Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQLSESIGDSH 237 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L++++ G P++ ++ A ++YY ++ R++LPY+IDG+V+KV+ + Q++ Sbjct: 238 IGILEQLKAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRE 297 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG RAR PRW I+HKF + T +LD++ Q+GRTG +TPVARL+PV + G ++NATLH Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I L +R+GD V+++RAG+VIP+V+ +++ R DA+P PS C Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPQDARPVEVPSEC 406 Query: 435 PICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+C S+ V R +T A +RC G LAC AQ + + H+VSR A +I+GLG+ Sbjct: 407 PVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ I PAD++ LQ Q + GF +VS L D+I + Sbjct: 467 KSVEQLVDE----GLIGSPADLYKLQFEQVVG------LEGFAEVSTQKLLDAIEASKRP 516 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SL RFI++LGI VG E A+ LA+ S Q + + L +P +G + Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQV----------LTYLPDIGLEV 566 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENK 650 A I F+++ N ++ LL E S+ + Sbjct: 567 AYEIHNFFEDEHNQKVIQQLLDSGMQLQDEGELAAEFAASTTLAGM 612 Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats. Identities = 52/255 (20%), Positives = 92/255 (36%), Gaps = 19/255 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R ++ + + D + F + + I+ +L G Sbjct: 537 VLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFF---EDEHNQKVIQQLLDSGMQL 593 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + + +L I L I VG A L S D Sbjct: 594 QDEGELAAEFAASTTLAGMIAKLDIASVGPTGAEKLVSKLDSLDKIIAA------DGIDL 647 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA----LLKEVSPSIGRHEKNVSSEIENK 650 +L A A+ EF+++ N LL + + + Sbjct: 648 RQALAA------KQADAVREFFKDEANQKLARDIEAQLLAFGMHWSSEKKVAEGLPLAGQ 701 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 V TGTL+++ R A++ + LGA V+ +S KT ++ G GSKL KA +LGVK+++ Sbjct: 702 TWVLTGTLERMSRDIAKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKAAELGVKVLD 761 Query: 711 EEQFLFLLQQYNTTL 725 E+ F+ L + + Sbjct: 762 EDAFVTFLAEQGIAV 776 >gi|313106533|ref|ZP_07792762.1| DNA ligase [Pseudomonas aeruginosa 39016] gi|310879264|gb|EFQ37858.1| DNA ligase [Pseudomonas aeruginosa 39016] Length = 794 Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats. Identities = 220/650 (33%), Positives = 336/650 (51%), Gaps = 52/650 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + A + ++ L E+ H+ YY +P I D+EYD L R A+ +P L P+ Sbjct: 3 DTQAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLL---TPD 59 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--------N 124 P ++ G + +V H IP LSL + +DL F R+ Sbjct: 60 SPTQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGA 119 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPE 183 + ++ EPK+DG +++ YE+G+ V A RGDG +GED+++ +R I +P L PE Sbjct: 120 EVEYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPE 179 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 I+EVRGEV++SK F ALN + + G K +ANPRNAA+G LR+L+ +R L F +G Sbjct: 180 ILEVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYG 239 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G+ S + Q +L+ R G P++ +R YY+++ R L Y+IDG+ Sbjct: 240 FGQVSGTLSDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGV 299 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V+KV+ + Q++LG RAR PRW I+HKF ++ T LL ++ Q+GRTG +TPVARL+PV Sbjct: 300 VFKVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQ 359 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G ++NATLHN D + L +R+GD V+++RAG+VIP+V+ +++ R Sbjct: 360 VAGVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRP 408 Query: 423 PDAQPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 DAQ P CP+C S V R ++ A +RC G L+C AQ + + HFV Sbjct: 409 ADAQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFV 468 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 SR A +I+GLG + ++ + PAD++TL Q + GF ++S Sbjct: 469 SRRAMDIDGLGDKIVEQLVDR----GLVASPADLYTLTYEQVF------ELEGFAELSTN 518 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 NL +I R SL RFIF+LGI VG E A+ LA+ S + + + + Sbjct: 519 NLLAAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEV--------- 569 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL--KEVSPSIGRHEKNVS 644 L +P VG +A I F+ + N + L + E Sbjct: 570 -LTYLPDVGAEVAYEIHNFFADEHNRQVIAQLRDAEHGVQLQEEGEVAAE 618 Score = 183 bits (464), Expect = 1e-43, Method: Composition-based stats. Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 14/199 (7%) Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 G + SL FI L I + A A LA + S + Sbjct: 605 HGVQLQEEGEVAAEFAACASLAGFIDKLNIPFIAATGAEKLASRFGSLDGIIRA------ 658 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS- 645 DWL L +V + + A+++ +F+ P N+ A+EA L+E K V Sbjct: 659 ----DWLDLRQVERLPERAAKSLRDFFDEPANVQRALAIEAQLREFGMHWQSERKAVEGL 714 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 + + V TGTL+ + R A++ + LGA V+ +S KT ++ G GSKL KA +LG Sbjct: 715 PLAGQIWVLTGTLEAMSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELG 774 Query: 706 VKIMNEEQFLFLLQQYNTT 724 VK+++E+ L L ++ Sbjct: 775 VKVLDEDGLLKLFDEHGVA 793 >gi|311086964|gb|ADP67044.1| DNA ligase (NAD+) [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 678 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 222/712 (31%), Positives = 371/712 (52%), Gaps = 50/712 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + ++ L + + ++ Y+ ++ II D+EYD L R+ + +L S + P K Sbjct: 5 KDKIEKLRKILLKYEYFYHTLNQSIISDAEYDYLFRQLYELELKNKELIPS---DSPTQK 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + K+ H P LSLE +++ F RI + ++ + F E K+DG Sbjct: 62 VGSHILQKFKKIKHFSPMLSLENTFDVNGYLNFKKRIKKSI--HNNEPLSFCCELKLDGV 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196 I+I YE+G FV AA RGDG GE++++ R I +IP L +IP+ +E+RGEV++ K+ Sbjct: 120 AISIIYEEGIFVRAATRGDGFEGENITSNARMIDSIPLKLKGIDIPKRLEIRGEVFMLKS 179 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT--SEIFAKG 253 +F+ LN + K ++NPRNAA+G LR ++P R L F HG + Sbjct: 180 NFIKLNKKYKLNQNKYFSNPRNAAAGSLRHIDPNITAERKLIFSCHGCDFFVKTNKELTT 239 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Y+ L K G PVN + ++ I+ +Y ++ R+ L +DIDG+V KV+ LQK Sbjct: 240 HYQRLMKCLSWGIPVNKEIVICSSDIEIIQFYKKIAQKRNFLDFDIDGIVIKVNSLELQK 299 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 ++G +SPRW I+ KF+ K+ T L D+ Q+GRTG++TPVA PV I G +I+ A+L Sbjct: 300 KIGSTTKSPRWAIAFKFSPKERITTLNDVKFQVGRTGVITPVAYFNPVYISGVMISKASL 359 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN++ I+ L ++ D + + R+G+VIP+++++I R +A+ FPSF Sbjct: 360 HNKNEIERL-----------NLHFNDTITICRSGDVIPRLLNVIEIRRCDNAKKIIFPSF 408 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C + ++ ++ K + C GL C AQ+ + L HF S+ + + GLG + ++ Sbjct: 409 CPVCNTELLENIEEKLIR------CHSGLTCDAQKKQALYHFFSKKSLYVVGLGPKIINE 462 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + ++ P D F L+ + G + +SI K + +L+ F Sbjct: 463 LVEK----GLVKNPIDFFYLKDIDLI------QLKNVGKRKSIKIINSIKKCKKTTLKCF 512 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I++LGI VG +A +A Y++ N + L L + VG II+ I Sbjct: 513 IYALGIPGVGEVVAGKIANYFIKLDKLM----------NSNILELNCISGVGKIISNNIF 562 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++ N V L+K+ + E + + NKK+V TG + R + + Sbjct: 563 NYFSTISNREMVVKLIKQAGIFLNDQEIHKINSEKTYFFNKKIVLTGVFKSFSRIELKTI 622 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 + LGA +S +SRKTD +I G+N GSK +A+ L VKI+N+E+ L++++ Sbjct: 623 LLSLGAKISNNISRKTDFLIYGNNFGSKFFRAKDLDVKIINQEELNSLIRKF 674 >gi|257066474|ref|YP_003152730.1| NAD-dependent DNA ligase LigA [Anaerococcus prevotii DSM 20548] gi|256798354|gb|ACV29009.1| DNA ligase, NAD-dependent [Anaerococcus prevotii DSM 20548] Length = 666 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 179/711 (25%), Positives = 333/711 (46%), Gaps = 56/711 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 R+++ L ++I + YY +P++ D EYD + + + P Sbjct: 2 DKREKIDKLIEKIENLNYHYYTLDEPLVSDGEYDQIYDELRKLEEE----TGYVRDDSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFT 129 +GGE+ K H LS K E+L +I R R + N + + Sbjct: 58 QVVGGEILDKFEKHFHITKLLSQNKAQTHEELEAWIDRCNRLRDDYNINHDDKLAELEYI 117 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 +E K DG + + Y G V AA RG+G GE++S +R I +IP + ++E++G Sbjct: 118 MEYKFDGLTVNLTYNNGNLVNAATRGNGIIGEEISPQVRTIRSIPNRIKE--KSLLEIQG 175 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E + ++ N+E N RNAA+G LR LN + + T+ + Sbjct: 176 EALMPLSELTRYNEE----NELQLKNARNAAAGALRNLNTKETAKRKLTAYFYSIPTNNL 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + +ML+ ++ G ++ ++ + +++ + ++ R + DG+V K+++ Sbjct: 232 DFATEEDMLEFLKEQGLLIHPYHKKVHNLEEMLAELDFIEEERKNIDILTDGVVIKINDK 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+ LG + PRW I++KF ++ +T L ++ +GR+G +TP A L+PV GA ++ Sbjct: 292 RTQEVLGSTNKFPRWSIAYKFEAEEYTTTLREVVWNVGRSGKVTPSAILDPVEFSGATVS 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATL+N D I + +R+G +V ++R+ +VIP+++ ++ + Sbjct: 352 RATLNNYDDIIR-----------KKVRIGSKVFIRRSNDVIPEILGVVDEN-QEGTKEIE 399 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 PS CP C S +++ C ++C Q L R++HF SR+A +IEGL ++ Sbjct: 400 KPSKCPYCGSELIQ--------GNVHIICPNSISCKPQLLARMEHFTSRNAMDIEGLSEK 451 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + + D I DI+ L + + FGD NL ++I + + Sbjct: 452 TIAQLMEELD----INEVDDIYDLSYDDLIN------LDRFGDKKTKNLLNAIEASKKVD 501 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L+ FI+++GI +VG +R LA + S+ L + +G+I A Sbjct: 502 LDNFIYAIGIPNVGERTSRDLANKFKSFDALRHA----------SLEELSDIDDIGEITA 551 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 Q I+E++++P +++ LLK+ N S + + V TGT+ +R ++ Sbjct: 552 QNIIEYFRDPNISKSIDNLLKKGIEISEVKADNNSDSLNDMTFVITGTIDNYKRDDIKKL 611 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + GA V+ +S+ TD+++ G+ GSK +KA+ LG++I ++ L++ Sbjct: 612 LESNGAKVTGSVSKNTDVVLAGEKSGSKKDKAKNLGIEIYENDKLYDFLKE 662 >gi|260773253|ref|ZP_05882169.1| DNA ligase [Vibrio metschnikovii CIP 69.14] gi|260612392|gb|EEX37595.1| DNA ligase [Vibrio metschnikovii CIP 69.14] Length = 591 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 222/629 (35%), Positives = 349/629 (55%), Gaps = 44/629 (6%) Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL+ + +L F RI F EPK+DG +++ Y G+ AA R Sbjct: 1 MLSLDNAFADSELDSFFRRIGERVAATQHA--RFCCEPKLDGLAVSLLYIDGRLTQAATR 58 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 GDG +GE+++ +R I +IP LS P IEVRGEV++ K F +N + + G+K + Sbjct: 59 GDGTTGENITENVRTIKSIPLKLSGTGWPSRIEVRGEVFMPKEGFERMNAQALKKGQKVF 118 Query: 214 ANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNG 271 NPRNAA+G LR+L+ R L F+ + +G + Y+ +++ G PV+ Sbjct: 119 VNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVVEGAELSTSHYDRFLQLKSWGLPVSPE 178 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 ++ + YY + + R+ LPY+IDG+V KVD+ +LQ++LG AR+PRW I++KF Sbjct: 179 TQRVENAQQVKDYYQTIMAKRADLPYEIDGVVIKVDDIALQEKLGFVARAPRWAIAYKFP 238 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ TRL +++ Q+GRTG +TPVA+LEP+ +GG ++NATLHN D I+ L Sbjct: 239 AQEEMTRLNEVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLHNADEIERL--------- 289 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 + VGD V+++RAG+VIP++V +++ R +AQP FPS CP+CQS V R Sbjct: 290 --GVMVGDTVIIRRAGDVIPQIVSVVLERRPQEAQPIIFPSHCPVCQSDVERVEGE---- 343 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RCTGGL C AQ+ E LKHFVSR A +++GLG + ++ + E + PAD+F Sbjct: 344 --AVARCTGGLVCQAQRKEALKHFVSRKAMDVDGLGDKVIEQLVERE----MVETPADLF 397 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 L+ ++ + G S N+ ++ + +L RF+++LGIR VG A +LA Sbjct: 398 KLRA------GELTVLDRMGPKSAQNITQALINAKRTTLARFLYALGIREVGEATAMNLA 451 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 +++ + + +Q LI V VG I+A + F+ +N V+ L Sbjct: 452 QHFCTLEAISQA----------SIEQLIGVQDVGMIVASHVHAFFSQEKNQRVVQELRDL 501 Query: 632 VS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 P I + + K +V TG+L ++ R +A+ + LGA V+ +S+ TD++ Sbjct: 502 GVTWPDIEPQDVAKPQPLAGKTVVLTGSLVQLSRTEAKAALQSLGAKVTGSVSKNTDMLF 561 Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G+ GSKL KAQ+LG++I +E+ L LL Sbjct: 562 AGEAAGSKLVKAQELGIEIFSEQDLLDLL 590 >gi|325274411|ref|ZP_08140498.1| NAD-dependent DNA ligase LigA [Pseudomonas sp. TJI-51] gi|324100446|gb|EGB98205.1| NAD-dependent DNA ligase LigA [Pseudomonas sp. TJI-51] Length = 776 Score = 438 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 222/646 (34%), Positives = 342/646 (52%), Gaps = 48/646 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + L E+ H+ YY +P + D+EYD L A+ P L P+ P Sbjct: 3 AETRIHELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + +V H +P LSL + DLR+F R+ + ++ ++ EPK+DG Sbjct: 60 RVGGAALSAFSQVRHEVPMLSLGNAFEEADLREFGRRVVDGLDQP--GAVDYSCEPKLDG 117 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 +++ Y G V A RGDG +GED+SA +R + IP L P ++EVRGEVY+SK Sbjct: 118 LAVSLLYRDGLLVQGATRGDGTTGEDISANVRTVRNIPLKLHGEGWPAVLEVRGEVYMSK 177 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 F LN G K +ANPRNAA+G LR+L+ +R L F +G+G+ S Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQLSASIGDSH 237 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L++++ G P++ ++ A + YY ++ R++LPY+IDG+V+KV+ + Q++ Sbjct: 238 IGILEQLKAWGLPISRELKHAAGIEECLDYYRDIGERRNSLPYEIDGVVFKVNSLAAQRE 297 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG RAR PRW I+HKF + T +LD++ Q+GRTG +TPVARL+PV + G ++NATLH Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I L +R+GD V+++RAG+VIP+V+ +++ R DA+P + PS C Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPDDARPVAVPSEC 406 Query: 435 PICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+C S+ V R +T A +RC G LAC AQ + + H+VSR A +I+GLG+ Sbjct: 407 PVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ I PAD++ LQ Q + GF +VS L D+I + Sbjct: 467 KSVEQLVDE----GLIGSPADLYKLQFEQVVG------LEGFAEVSTRKLLDAIEASKRP 516 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SL RFI++LGI VG E A+ LA+ S Q + + L +P +G + Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQV----------LTYLPDIGLEV 566 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENK 650 A I F+++ N ++ LL E S+ + Sbjct: 567 AYEIHNFFEDEHNQKVIQQLLDSGMHLQDEGELAAEFAASTSLAGM 612 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 94/255 (36%), Gaps = 19/255 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R ++ + + D + F + + I+ +L G Sbjct: 537 VLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFF---EDEHNQKVIQQLLDSGMHL 593 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + + SL I L I VG A L S D Sbjct: 594 QDEGELAAEFAASTSLAGMIAKLDIASVGPTGAEKLVAKLDSLDKIIAA------DGIDL 647 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICA---VE-ALLKEVSPSIGRHEKNVSSEIENK 650 +L A A+ EF+++ N +E LL + + + Sbjct: 648 RQALAA------KQADAVREFFKDEANQQLARAIEAQLLAFGMHWTSEKKVAEGLPLAGQ 701 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 V TGTL+++ R A++ + LGA V+ +S +T ++ G GSKL KA +LGVK+++ Sbjct: 702 TWVLTGTLERMSRDVAKDKLESLGAKVAGSVSGRTQCVVAGPGAGSKLAKASELGVKVLD 761 Query: 711 EEQFLFLLQQYNTTL 725 EE F+ L T+ Sbjct: 762 EEAFVAFLAGQGITI 776 >gi|219681449|ref|YP_002467834.1| DNA ligase (NAD+) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471124|ref|ZP_05635123.1| DNA ligase (NAD+) [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|254781271|sp|B8D8M5|DNLJ_BUCA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219624292|gb|ACL30447.1| DNA ligase (NAD+) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 675 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 222/709 (31%), Positives = 368/709 (51%), Gaps = 50/709 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + ++ L + + ++ Y+ ++ II D+EYD L R+ + +L S + P K Sbjct: 5 KDKIEKLRKILLKYEYFYHTLNQSIISDAEYDYLFRQLYELELKHKELIPS---DSPTQK 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + K+ H P LSLE +++ F RI + ++ + F E K+DG Sbjct: 62 VGSHILQKFKKIKHFSPMLSLENTFDVNGYLNFKKRIKKSI--HNNEPLSFCCELKLDGV 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196 I+I YE+G FV AA RGDG GE++++ R I +IP L +IP+ +E+RGEV++ K+ Sbjct: 120 AISIIYEEGIFVRAATRGDGFEGENITSNARMIDSIPLKLKGIDIPKRLEIRGEVFMLKS 179 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT--SEIFAKG 253 +F+ LN + K ++NPRNAA+G LR ++P R L F HG + Sbjct: 180 NFIKLNKKYKLNQNKYFSNPRNAAAGSLRHIDPNITAERKLIFSCHGCDFFVKTNKELTT 239 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Y+ L K G PVN + ++ I+ +Y ++ R+ L +DIDG+V KV+ LQK Sbjct: 240 HYQRLMKCLSWGIPVNKEIVICSSDIEIIQFYKKIAQKRNFLDFDIDGIVIKVNSLELQK 299 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 ++G +SPRW I+ KF+ K+ T L D+ Q+GRTG++TPVA PV I G +I+ A+L Sbjct: 300 KIGSTTKSPRWAIAFKFSPKERITTLNDVKFQVGRTGVITPVAYFNPVYISGVMISKASL 359 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN++ I+ L ++ D + + R+G+VIP+++++I R +A+ FPSF Sbjct: 360 HNKNEIERL-----------NLHFNDTITICRSGDVIPRLLNVIEIRRCDNAKKIIFPSF 408 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C + ++ ++ K + C GL C AQ+ + L HF S+ + + GLG + ++ Sbjct: 409 CPVCNTELLENIEEKLIR------CHSGLTCDAQKKQALYHFFSKKSLYVVGLGPKIINE 462 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + ++ P D F L+ + G + +SI K + +L+ F Sbjct: 463 LVEK----GLVKNPIDFFYLKDIDLI------QLKNVGKRKSIKIINSIKKCKKTTLKCF 512 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I++LGI VG +A +A Y++ N + L L + VG II+ I Sbjct: 513 IYALGIPGVGEVVAGKIANYFIKLDKLM----------NSNILELNCISGVGKIISNNIF 562 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++ N V L+K+ + E + + NKK+V TG + R + + Sbjct: 563 NYFSTISNREMVVKLIKQAGIFLNDQEIHKINSEKTYFFNKKIVLTGVFKSFSRIELKTI 622 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA +S +SRKTD +I G+N GSK +A+ L VKI+N+E+ L+ Sbjct: 623 LLSLGAKISNNISRKTDFLIYGNNFGSKFFRAKDLDVKIINQEELNSLI 671 >gi|325479535|gb|EGC82631.1| DNA ligase (NAD+) [Anaerococcus prevotii ACS-065-V-Col13] Length = 669 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 192/711 (27%), Positives = 344/711 (48%), Gaps = 56/711 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 R+E++ L +EI+ + YY +P++ D EYD + R + + + N P Sbjct: 2 DIREEINQLIEEINRLNYHYYTLDEPLVSDGEYDEIYDRLVKLEDK----SGYINENSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFT 129 K+GGE+ K H LS +K + L +I R R + ++ + F Sbjct: 58 QKVGGEVLEKFEKHFHITKLLSQDKAQTYDKLEDWINRANRLRRDYNNSHDDQLEKLTFI 117 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 +E K DG + + Y+ G V AA RG+G GE++SA + I +IP+ + ++E++G Sbjct: 118 MEYKFDGLTVNLTYDDGALVNAATRGNGTVGEEISAQVNTIKSIPKRIEE--KSLLEIQG 175 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E + ++ N+ N RNAA+G LR LNP + + T+ + Sbjct: 176 EALMPLSELKKYNEN----NEVQLKNARNAAAGALRNLNPKETAKRNLTAYFYSIPTNNL 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 K + EML+ ++ G + ++ N I++ +K R+TL DG+V K+++ Sbjct: 232 DFKSEEEMLEFLKKQGLQTHPYHKKVNNLDDIIAELERIKEERTTLDILTDGVVIKINDK 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+ LG + PRW I++K+ ++ +T L ++ +GRTG +TP A LEPV+ G +T Sbjct: 292 KTQEVLGTTNKFPRWSIAYKYEAEEFTTTLKEVVWNVGRTGKVTPSAILEPVDFSGVTVT 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATL+N D I + +++G +V ++R+ +VIP+++ ++ + P Sbjct: 352 RATLNNYDDI-----------LRKKVKIGSKVFIRRSNDVIPEILGVVDED-QPGTLEIE 399 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C S + + C ++C Q L +++HF SR+A +IEGL ++ Sbjct: 400 KPKHCPYCGSEL--------IEGNVHIICPNSISCKPQLLAKMEHFASRNAMDIEGLSEK 451 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + + D I DI+ L + + N+ FGD NL ++I + + Sbjct: 452 TISQLMDALD----INEIDDIYDL------TYDMLINLDRFGDKKTNNLLNAIEASKKVD 501 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L FI+++GI +VG +R LA + S+ Q L+ V +G+I A Sbjct: 502 LNNFIYAIGIPNVGERTSRDLANKFKSFDRLRQAKE----------EELVDVEDIGEITA 551 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 Q I+E++ +P +++ LL++ E N S+ +E+ V TGT++ +R + Sbjct: 552 QNIIEYFNDPNIKRSIDILLEKGIEISNPKEDNKSNGLEDMTFVITGTIENYKRDDIKNL 611 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + V+ +S+ TD ++ GD GSK +KA LG++I ++ L++ Sbjct: 612 IEKNAGKVTGSVSKNTDYVLCGDKAGSKKDKALNLGIEIYEGDKLYEFLEK 662 >gi|317179023|dbj|BAJ56811.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F30] Length = 657 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 222/710 (31%), Positives = 351/710 (49%), Gaps = 61/710 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE + ++ YY PI+ D+ YD L + A P+ ++ N P Sbjct: 3 KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAIYDELYQELKAYEEKNPNSIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G S K H + SL+ ++N +L+ ++ RI + + S F PK+D Sbjct: 60 QKVGATTTNSFNKNPHLMRMWSLDDVFNQNELQAWLQRILKAY-----PSASFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+ GK V A RG+G GE VSA + I IP + IE+RGEV ISK Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKRIANIPHA--IAYNGEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRNAASG LR+L+ R L F G+GK + Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R +DG+V V+E ++QK+ Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHALIREREGFFVLLDGMVIVVNELNIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+IT ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + + R P C Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAILKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LA+Y L+ ++ + + G +A+++V Sbjct: 502 NALGIEHIGKGASKTLARYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N + +L ++P + + ++ SS +K +V TG L K R + + + Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMTKEKQKSSSVFSHKTIVLTGMLSK-PRQEYAQMLE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 LGA +S+ +S KTD +IVG+N GSKL AQ+ GV ++NEE+ L L++ Sbjct: 606 NLGAKISSSVSTKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEE 655 >gi|77458028|ref|YP_347533.1| NAD-dependent DNA ligase LigA [Pseudomonas fluorescens Pf0-1] gi|123731132|sp|Q3KFB2|DNLJ_PSEPF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|77382031|gb|ABA73544.1| DNA ligase [Pseudomonas fluorescens Pf0-1] Length = 785 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 215/641 (33%), Positives = 334/641 (52%), Gaps = 48/641 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + A+ + L E+ H+ Y+ +P I D+EYD L A+ A P+L S + Sbjct: 1 MTAAKDRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAANPELITS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127 P ++G + +V H +P LSL + D+R+F R+ + ++ Sbjct: 58 PTQRVGSVALTAFTQVRHEVPMLSLGNAFEETDMREFDRRVTEGLDLPAGDLFGGGAAVE 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++ Y+ G V A RGDG +GED+S +R + IP L P +E Sbjct: 118 YSCEPKLDGLAVSLLYQDGVLVRGATRGDGTTGEDISVNVRTVRNIPLKLHGTGWPATLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV++SK F LN + VG K +ANPRNAA+G LR+L+ R L F +G+G+ Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQ 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S + LQ+++ G P+++ ++ A + YY ++ R++L Y+IDG+V+K Sbjct: 238 VSHDISDTHIGNLQQLKAWGMPISHELKLAKGIGECLDYYRDIGERRNSLAYEIDGVVFK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G Sbjct: 298 VNSIADQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + NATLHN D + L + +GD V+++RAG+VIP+VV +++ R DA Sbjct: 358 VTVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVMERRPEDA 406 Query: 426 QPFSFPSFCPICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +P P CP+C S V R +T A +RC G LAC AQ + + HFVSR Sbjct: 407 RPVQIPESCPVCGSHVERTQLVKRSKGKETISEGAVYRCVGRLACGAQLKQAIIHFVSRR 466 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG + ++ + PAD++ L+ + GF +VS L Sbjct: 467 AMDIEGLGDKSVEQLVDE----GLVSSPADLYALKFEDIVD------LEGFAEVSSNKLL 516 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I + L RFI++LGI VG E A+ LA+ S + Q + + L Sbjct: 517 AAIEDSKKPGLARFIYALGIPDVGEETAKVLARSLGSLERVQQALPQV----------LT 566 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 +P +G +A I F+++ N + LL + E Sbjct: 567 YLPDIGLEVAHEIHSFFEDAHNRQVITELLGHGLQIQDQGE 607 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 57/255 (22%), Positives = 99/255 (38%), Gaps = 21/255 (8%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R ++E + + D + F + I +LG G Sbjct: 546 VLARSLGSLERVQQALPQVLTYLPDIGLEVAHEIHSFF---EDAHNRQVITELLGHGLQI 602 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + +L F+ L I VG A+ LA + S + D Sbjct: 603 QDQGELGAEFAASTTLGGFLDKLHIPSVGPGGAQKLADKFESLEGVMNA----------D 652 Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRNICAVEA----LLKEVSPSIGRHEKNVSSEIEN 649 WL + +P + A ++ EF+ P + E L + + Sbjct: 653 WLDMRQALP---EKQANSVREFFALPEHRQLAEDAEKQLRDFGMHWQSEKKVVEGLPLAG 709 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 + V TG ++ + R A+E++ LGA V+ +S KT ++ G GSKL KA +LGVK+M Sbjct: 710 ETWVLTGKVELMSRDVAKEHLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGVKVM 769 Query: 710 NEEQFLFLLQQYNTT 724 +EE F+ L+ + + Sbjct: 770 DEEAFIAFLKGHGIS 784 >gi|222823679|ref|YP_002575253.1| DNA ligase, NAD-dependent [Campylobacter lari RM2100] gi|254781279|sp|B9KG17|DNLJ_CAMLR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|222538901|gb|ACM64002.1| DNA ligase, NAD-dependent [Campylobacter lari RM2100] Length = 651 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 215/701 (30%), Positives = 343/701 (48%), Gaps = 60/701 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +E + YY+ +P+ D EYD L R + + P I Sbjct: 4 QEYLEKVKLAKEWMRAYYEDDEPLASDEEYDKLIRELKEFEALY---KDKISKDSPTQNI 60 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 + K+THS S+E +++ +LR + R F +EPK DG Sbjct: 61 APTIQSEFHKITHSAKMWSMEDVFDEAELRAWAKRAK--------CEFDFFIEPKFDGAS 112 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + + YE GK + A RGDG GED++ ++ I IP + + IE+RGEV I K DF Sbjct: 113 LNLTYENGKLISGATRGDGEIGEDITLNVKEISNIP--KIIPYKDKIEIRGEVVILKEDF 170 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257 +N++ G +ANPRN ASG LR+L+ + R L F+ G+G + + E+ Sbjct: 171 EKINEKRAKDGLSLFANPRNGASGSLRQLDTSITKERNLKFYPWGVG-ENSLKFSKHSEV 229 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 ++ +R LGF ++ V T ++ Y+E+ R P +DG+V +VD+ ++LG Sbjct: 230 MEFIRSLGFLKDDFVYCVKTLDEVLEKYHELLEKRDQKPMMMDGMVVRVDDLKKCQELGY 289 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 + P++M + KF + +T LL +++Q+GR+G++TPVA LEPV + G ++ +ATLHN D Sbjct: 290 TVKFPKFMAAFKFPALEKTTTLLGVNLQVGRSGVITPVAILEPVELDGVVVKSATLHNFD 349 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I L + +GD V V R+G+VIPK+ + R + PS CP C Sbjct: 350 EITRL-----------GVMIGDSVSVIRSGDVIPKITKVFTQRRDGLESKITKPSLCPEC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S ++ + A L C A+ + + +FVS+ NI+GLG+ ++ FK Sbjct: 399 LSELLDEG---------AFLKCQNLDCKARLVNSIIYFVSKKCLNIDGLGENIVELLFKE 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I IF L+ N+ GF + + NL ++I + SL RFI +L Sbjct: 450 ----GKITNIESIFFLKYDDF------LNLEGFKEKKINNLLNAIENAKKCSLSRFITAL 499 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI H+G A+ LA+ + + F Q + + + + G+ +A+++ EF Sbjct: 500 GIEHIGEVAAKKLAQSFG-FDWFLQ-----------SYEAYVNLEGFGEQMAKSLQEF-- 545 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 N ++ + + + E ++ I NK V TGTL K R +E + GA V Sbjct: 546 TKINHQRIKHFYEILHLEDEKKELALNENISNKTFVITGTLSK-SRDHFKELIESFGAKV 604 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 S+ +S+KTD ++ G GSKLEKAQ LGVK +NE++F LL Sbjct: 605 SSSVSKKTDFVLYGSEAGSKLEKAQSLGVKCINEDEFNALL 645 >gi|254779395|ref|YP_003057500.1| NAD-dependent DNA ligase LigA [Helicobacter pylori B38] gi|254001306|emb|CAX29287.1| DNA ligase (NAD(+)) [Helicobacter pylori B38] Length = 656 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 213/709 (30%), Positives = 344/709 (48%), Gaps = 61/709 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE ++ YY + I+ D+ YD L + A P+ ++ N P Sbjct: 3 KSQKEYLERIAYLNTLSHHYYNLDESIVSDAVYDELYQELKAYEEENPNDIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G S K H + SL+ ++N +L+ ++ RI + + S F PK+D Sbjct: 60 QKVGAITTNSFNKNPHLMRMWSLDDVFNQSELQAWLQRILKVY-----PSASFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y GK + A RG+G GE V+ + I IP + IE+RGEV ISK Sbjct: 115 GVSLNLLYHHGKLISATTRGNGLEGELVTNNAKHIANIPHF--IAYNGEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRNAASG LR+L+ R L F G+GK + Sbjct: 173 KDFDALNQERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R +DG+V V+E +QK+ Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEDNYHTLIREREGFFALLDGMVIVVNELGIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEP+ I GA++ ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPIEIAGAMVNRATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + R P C Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLETYRDGSQHKIERPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ + I D++ L+ + F NL D+I K +N L R I Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAILKSKNPPLWRLI 501 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGI H+G +++LA+Y L+ ++ + + G +A ++V Sbjct: 502 NALGIEHIGKGASKTLARYGLNVLEKSEA-------------EFLEMEGFGVEMAHSLVN 548 Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 FY + N + +L ++P + ++ SS +K +V TGTL K R + + + Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAEEKQKSSSVFSDKTIVLTGTLSK-PRQEYAQMLE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA +++ +S KT+ +I G+NPGSKL A++ GV ++NEE+ L L++ Sbjct: 606 NLGAKIASSVSTKTNFLIAGENPGSKLALAKKHGVSVLNEEELLKRLKK 654 >gi|302382738|ref|YP_003818561.1| DNA ligase, NAD-dependent [Brevundimonas subvibrioides ATCC 15264] gi|302193366|gb|ADL00938.1| DNA ligase, NAD-dependent [Brevundimonas subvibrioides ATCC 15264] Length = 777 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 236/737 (32%), Positives = 337/737 (45%), Gaps = 62/737 (8%) Query: 41 PIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEK 100 P + D++YDA+K R AI FP L RS + P K+G ++ +V H +P LSL+ Sbjct: 42 PTVSDADYDAMKARNLAIETRFPALVRS---DSPSLKVGAPVSTQFTEVRHGVPMLSLDN 98 Query: 101 IWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSG 160 + D+ F+ RI RF D + FT EPKIDG +RYE G V A RGDG +G Sbjct: 99 AFEAADVTDFVARIRRFLNLPADEVVAFTAEPKIDGLSANLRYEDGVLVQGATRGDGRAG 158 Query: 161 EDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNA 219 ED++A ++ I IP L+ P IEVRGEVY + F A N E A GR+ YANPRN Sbjct: 159 EDITANLKTIADIPHRLNGKGWPARIEVRGEVYAPNDAFAAFNAEAEAAGRRTYANPRNF 218 Query: 220 ASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTF 278 A+G LR+++PT R L FF + G+TSE FA+ Q L+ GFPVN + Sbjct: 219 AAGSLRQIDPTVTAARPLRFFAYAWGETSEPFAETQAGALEAFEAWGFPVNPRSVRVEGS 278 Query: 279 HGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTR 338 G++ Y +++ R+ L YDIDG+VYKVD Q +LG +RSPRW I+HKF +QA+T Sbjct: 279 DGLIDVYRGLETDRAGLGYDIDGVVYKVDRLDWQTRLGFVSRSPRWAIAHKFPAQQATTV 338 Query: 339 LLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD---ASGKVMRGGRDI 395 L IDIQ+GRTG LTPVARL PV +GG ++ NATLHNED I D V++ D+ Sbjct: 339 LEGIDIQVGRTGSLTPVARLAPVTVGGVVVRNATLHNEDEIARKDVRIGDTVVLQRAGDV 398 Query: 396 RVGDRVLV--KRAGEVIPKVVDIIVNERHPDA----------------QPFSFPSFCPIC 437 +V KR + +P V +A Sbjct: 399 IPQIVSVVLDKRPADALPYVFPTHCPVCGSEAVREGDDVRRRCTGGLICSAQLIERLKHF 458 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL-GKQQLDFFFK 496 SR D+ K ++A G + A + DA E G+ + Sbjct: 459 VSRRAFDIEGLGEKQLSAFHDRGWIHEPADIFRLARDADKLDALRAEDGYGETSVRNLVA 518 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 D I + IF L R T + FGD + + S E + Sbjct: 519 GIDARRVISLERLIFGLGIRDIGDQTSLLLARHFGDWASFHAAAMEAASGIPSPEWTQLA 578 Query: 557 LGIRHVGAEIA-------------------RSLAKYYLSYQNFAQ--------------- 582 G ++ + LA + A+ Sbjct: 579 EGHGVSPRTLSVMAAATLSPADPWPEAPIDQKLALAFPGIAAPARRALGPLAVDWAGIVE 638 Query: 583 -EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 + + + VG + A+A+ +F+ P N V ALL E++ Sbjct: 639 LARIAREDGPSMTLGEIAGIAGVGPVAARAVADFFHEPHNQAVVAALLAELTTVQDAERP 698 Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701 + + K +VFTG L++ R +A+ LGA VS +S+KTD ++ G GSKL A Sbjct: 699 KSDTAVTGKTVVFTGALERFTRDEAKARAESLGAKVSGSVSKKTDYLVAGPGAGSKLADA 758 Query: 702 QQLGVKIMNEEQFLFLL 718 Q+ GV ++ E+++L L+ Sbjct: 759 QKHGVAVLTEDEWLALI 775 >gi|327480472|gb|AEA83782.1| NAD-dependent DNA ligase LigA [Pseudomonas stutzeri DSM 4166] Length = 791 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 218/641 (34%), Positives = 340/641 (53%), Gaps = 49/641 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S + A + ++ L EI H+ YY +P + D+EYD L A+ P+L P Sbjct: 3 SAQTAAERIAELRSEIDAHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPELV---TPE 59 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSI 126 P ++GG + +V H +P LSL + +DL F R+ D ++ Sbjct: 60 SPTQRVGGAALAAFGQVRHEVPMLSLGNAFEEQDLLDFDRRVREGLDLPAGDLFGDGAAV 119 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEII 185 ++ EPK+DG +++ YE G V A RGDG +GED+SA +R + IP L + P ++ Sbjct: 120 EYSCEPKLDGLAVSLLYENGHLVRGATRGDGSTGEDISANVRTVRNIPLKLHGSGWPAVL 179 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGE+Y+ K F ALN + G KP+ANPRNAA+G LR+L+ +R L +G+G Sbjct: 180 EVRGEIYMPKAGFEALNARQLESGGKPFANPRNAAAGSLRQLDSKITASRPLELCAYGVG 239 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 ++ +L+ ++ G P++ ++ A +YY+ + + R LPY+IDG+V+ Sbjct: 240 RSDGELPNTHIGILEALKGWGLPISRELKLAKGVAECRAYYDAIGAKRDALPYEIDGVVF 299 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ Q++LG RAR PRW I+HKF ++ T LLD++ Q+GRTG +TPVARL+PV + Sbjct: 300 KVNAVEQQRELGFRAREPRWAIAHKFPAREEITELLDVEFQVGRTGAITPVARLKPVQVA 359 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++NATLHN D + L + +GD V+V+RAG+VIP+++ +I R D Sbjct: 360 GVTVSNATLHNMDEVARL-----------GVMIGDTVIVRRAGDVIPQILGVIAERRPTD 408 Query: 425 AQPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 A+ P CP+C S V R ++ + +RC G LAC AQ + + HFVSR Sbjct: 409 ARAVHVPEQCPVCGSAVERTQLIKRSKGRESVSEGSIYRCVGRLACQAQLKQAIIHFVSR 468 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG + ++ +R PAD++ L Q + GF ++S NL Sbjct: 469 RAMDIDGLGDKIVEQLVDK----GLVRSPADLYCLTHEQVI------ELEGFAEISTRNL 518 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +I+ R SL RF+++LGI VG E A+ LA+ S + + ++ L Sbjct: 519 LHAIDASRKPSLARFVYALGIPDVGEETAKLLARALGSLDRIGRALPDV----------L 568 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639 + +P VG +A I F+++ N + ALL+E Sbjct: 569 VYLPDVGLEVAHEIHSFFEDEHNRTVI-ALLRERGVEPQEE 608 Score = 183 bits (463), Expect = 1e-43, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 101/250 (40%), Gaps = 17/250 (6%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R +++ +G+ D D + F + + T I + G Sbjct: 549 LLARALGSLDRIGRALPDVLVYLPDVGLEVAHEIHSFF---EDEHNRTVIALLRERGVEP 605 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 +L + L I H+ A+ LA+ + S + D Sbjct: 606 QEEGDVHPEFAACATLPDLLDRLNIPHIARTGAQRLAERFGSLEAIIAA----------D 655 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENK 650 WL L +V + + A+++ +++ N A+EA L+E K + + Sbjct: 656 WLDLRQVERLTEKAARSLRDYFDKSENAERARAIEAQLREFGMHWESERKAAEGLPLAGQ 715 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 V TGTL+ + R + + + LGA V+ +S KT ++ G GSKL KA + GV +++ Sbjct: 716 TWVLTGTLETMSRDEGKARLEALGAKVAGSVSAKTTCVVAGPGAGSKLTKANEFGVVVLD 775 Query: 711 EEQFLFLLQQ 720 E QFL L Q Sbjct: 776 EAQFLERLAQ 785 >gi|330960233|gb|EGH60493.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. maculicola str. ES4326] Length = 787 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 221/656 (33%), Positives = 340/656 (51%), Gaps = 53/656 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + L E+ H+ Y+ +P I D EYD L A+ P L P+ Sbjct: 1 MKAVETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127 P ++G + +V H +P LSL + DLR+F R+ + ++ Sbjct: 58 PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGAGSTVE 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP L PE++E Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPEVLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV++SK F LN + VG K +ANPRNAA+G LR+L+ R L F +GLG+ Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 TS A +L ++ G PV+ ++ AN ++YY ++ R +L Y+IDG+V+K Sbjct: 238 TSAEIADTHIGVLNALKKWGMPVSRELKLANGVEECLAYYKDIGERRLSLSYEIDGVVFK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G Sbjct: 298 VNSLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++ R A Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPQTA 406 Query: 426 QPFSFPSFCPICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +P P CP+C S+ V R +T A +RC G LAC AQ + + H+VSR Sbjct: 407 KPVEVPQTCPVCGSQVERTQLVKRSKGKETISEGAVYRCVGRLACGAQLKQAIIHYVSRR 466 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG + ++ + I PAD++ L+ Q + GF ++S L Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I + +L RFI++LGI VG E A+ LA+ S Q + + L Sbjct: 517 KAIADSKQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650 +P +G +A I F+++ N ++ALL E + + S+ +E Sbjct: 567 YLPDIGLEVAHEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622 Score = 166 bits (421), Expect = 1e-38, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 102/257 (39%), Gaps = 20/257 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R +++ + + + D + F + + G Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDIGLEVAHEIHSF--FEDEHNRNVIDALLGECGLQL 603 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + +LE I L I VG A+ LA+ + + + D Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLAEKFGTLEAVISA----------D 653 Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEKNVSS-EIEN 649 WL + +P + A+++ +F+ N +EA LK+ +K V + Sbjct: 654 WLDMRQALP---EKQAKSVRDFFDANANAERARAIEAQLKDFGMHWRSEKKAVEGLPLAG 710 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 + V TGTL+++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ ++ Sbjct: 711 QTWVLTGTLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770 Query: 710 NEEQFLFLLQQYNTTLR 726 +EE L L + + Sbjct: 771 DEEALLKRLTELGVAVD 787 >gi|219682005|ref|YP_002468389.1| DNA ligase (NAD+) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|254781272|sp|B8D6X9|DNLJ_BUCAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219621738|gb|ACL29894.1| DNA ligase (NAD+) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311085811|gb|ADP65893.1| DNA ligase (NAD+) [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086384|gb|ADP66465.1| DNA ligase (NAD+) [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 676 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 222/709 (31%), Positives = 368/709 (51%), Gaps = 50/709 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + ++ L + + ++ Y+ ++ II D+EYD L R+ + +L S + P K Sbjct: 5 KDKIEKLRKILLKYEYFYHTLNQSIISDAEYDYLFRQLYELELKNKELIPS---DSPTQK 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + K+ H P LSLE +++ F RI + ++ + F E K+DG Sbjct: 62 VGSHILQKFKKIKHFSPMLSLENTFDVNGYLNFKKRIKKSI--HNNEPLSFCCELKLDGV 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196 I+I YE+G FV AA RGDG GE++++ R I +IP L +IP+ +E+RGEV++ K+ Sbjct: 120 AISIIYEEGIFVRAATRGDGFEGENITSNARMIDSIPLKLKGIDIPKRLEIRGEVFMLKS 179 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT--SEIFAKG 253 +F+ LN + K ++NPRNAA+G LR ++P R L F HG + Sbjct: 180 NFIKLNKKYKLNQNKYFSNPRNAAAGSLRHIDPNITAERKLIFSCHGCDFFVKTNKELTT 239 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Y+ L K G PVN + ++ I+ +Y ++ R+ L +DIDG+V KV+ LQK Sbjct: 240 HYQRLMKCLSWGIPVNKEIVICSSDIEIIQFYKKIAQKRNFLDFDIDGIVIKVNSLELQK 299 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 ++G +SPRW I+ KF+ K+ T L D+ Q+GRTG++TPVA PV I G +I+ A+L Sbjct: 300 KIGSTTKSPRWAIAFKFSPKERITTLNDVKFQVGRTGVITPVAYFNPVYISGVMISKASL 359 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN++ I+ L ++ D + + R+G+VIP+++++I R +A+ FPSF Sbjct: 360 HNKNEIERL-----------NLHFNDTITICRSGDVIPRLLNVIEIRRCDNAKKIIFPSF 408 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C + ++ ++ K + C GL C AQ+ + L HF S+ + + GLG + ++ Sbjct: 409 CPVCNTELLENIEEKLIR------CHSGLTCDAQKKQALYHFFSKKSLYVVGLGPKIINE 462 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + ++ P D F L+ + G + +SI K + +L+ F Sbjct: 463 LVEK----GLVKNPIDFFYLKDIDLI------QLKNVGKRKSIKIINSIKKCKKTTLKCF 512 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I++LGI VG +A +A Y++ N + L L + VG II+ I Sbjct: 513 IYALGIPGVGEVVAGKIANYFIKLDKLM----------NSNILELNCISGVGKIISNNIF 562 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++ N V L+K+ + E + + NKK+V TG + R + + Sbjct: 563 NYFSTISNREMVVKLIKQAGIFLNDQEIHKINSEKTYFFNKKIVLTGVFKSFSRIELKTI 622 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA +S +SRKTD +I G+N GSK +A+ L VKI+N+E+ L+ Sbjct: 623 LLSLGAKISNNISRKTDFLIYGNNFGSKFFRAKDLDVKIINQEELNSLI 671 >gi|15616692|ref|NP_239904.1| DNA ligase (NAD+) [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11132251|sp|P57172|DNLJ_BUCAI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|25294009|pir||F84937 DNA ligase (NAD) (EC 6.5.1.2) [imported] - Buchnera sp. (strain APS) gi|10038755|dbj|BAB12790.1| DNA ligase (NAD+) [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 675 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 222/709 (31%), Positives = 368/709 (51%), Gaps = 50/709 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + ++ L + + ++ Y+ ++ II D+EYD L R+ + +L S + P K Sbjct: 5 KDKIEKLRKILLKYEYFYHTLNQSIISDAEYDYLFRQLYELELKNKELIPS---DSPTQK 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + K+ H P LSLE +++ F RI + ++ + F E K+DG Sbjct: 62 VGSHILQKFKKIKHFSPMLSLENTFDVNGYLNFKKRIKKSI--HNNEPLSFCCELKLDGV 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196 I+I YE+G FV AA RGDG GE++++ R I +IP L +IP+ +E+RGEV++ K+ Sbjct: 120 AISIIYEEGIFVRAATRGDGFEGENITSNARMIDSIPLKLKGIDIPKRLEIRGEVFMLKS 179 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT--SEIFAKG 253 +F+ LN + K ++NPRNAA+G LR ++P R L F HG + Sbjct: 180 NFIKLNKKYKLNQNKYFSNPRNAAAGSLRHIDPNITAERKLIFSCHGCDFFVKTNKELTT 239 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Y+ L K G PVN + ++ I+ +Y ++ R+ L +DIDG+V KV+ LQK Sbjct: 240 HYQRLMKCLSWGIPVNKEIVICSSDIEIIQFYKKIAQKRNFLDFDIDGIVIKVNSLELQK 299 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 ++G +SPRW I+ KF+ K+ T L D+ Q+GRTG++TPVA PV I G +I+ A+L Sbjct: 300 KIGSTTKSPRWAIAFKFSPKERITTLNDVKFQVGRTGVITPVAYFNPVYISGVMISKASL 359 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN++ I+ L ++ D + + R+G+VIP+++++I R +A+ FPSF Sbjct: 360 HNKNEIERL-----------NLHFNDTITICRSGDVIPRLLNVIEIRRCDNAKKIIFPSF 408 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C + ++ ++ K + C GL C AQ+ + L HF S+ + + GLG + ++ Sbjct: 409 CPVCNTELLENIEEKLIR------CHSGLTCDAQKKQALYHFFSKKSLYVVGLGPKIINE 462 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + ++ P D F L+ + G + +SI K + +L+ F Sbjct: 463 LVEK----GLVKNPIDFFYLKDIDLI------QLKNVGKRKSIKIINSIKKCKKTTLKCF 512 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I++LGI VG +A +A Y++ N + L L + VG II+ I Sbjct: 513 IYALGIPGVGEVVAGKIANYFIKLDKLM----------NSNILELNCISGVGKIISNNIF 562 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++ N V L+K+ + E + + NKK+V TG + R + + Sbjct: 563 NYFSTISNREMVVKLIKQAGIFLNDQEIHKINSEKTYFFNKKIVLTGVFKSFSRIELKTI 622 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA +S +SRKTD +I G+N GSK +A+ L VKI+N+E+ L+ Sbjct: 623 LLSLGAKISNNISRKTDFLIYGNNFGSKFFRAKDLDVKIINQEELNSLI 671 >gi|237804493|ref|YP_002888647.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis B/TZ1A828/OT] gi|231272793|emb|CAX09699.1| NAD-dependent DNA ligase [Chlamydia trachomatis B/TZ1A828/OT] Length = 663 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 219/713 (30%), Positives = 349/713 (48%), Gaps = 71/713 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R + +L E+ HD YY ++P I D YD R I P+ S P Sbjct: 6 RDDYIALCAELVEHDRRYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSW---SPTMY 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + V HS P LS+ ++++++L +F +R + S ++LE KIDG Sbjct: 63 LGDRPSGQFPVVPHSSPMLSIANVYSLQELEEFFSRTEKLLG----YSPGYSLELKIDGI 118 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + IRYEK F A RG+G GED++A + I ++P L PE +EVRGEV++S Sbjct: 119 AVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSYEA 178 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F LN G+ +ANPRNAA G L+ L+ + + G ++ + +E Sbjct: 179 FEELNACQREQGKLEFANPRNAAGGTLKLLSFKEA-AKRKLDLSVYGLITDQKKRSHFEN 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 LQ GF V +Q + +V E++ +R+ LP IDG+V KVD + Q +LG Sbjct: 238 LQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRAALPMAIDGVVIKVDNIAHQDRLGL 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++ RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+N+D Sbjct: 298 TSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLYNQD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ +DIR+GD V V++ GEVIPK+V I + +R ++ P+ PS CP+C Sbjct: 358 EIEK-----------KDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESGPWKMPSLCPVC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 VV++ + RC L + F S+ A NI+ LG++ + F+ Sbjct: 407 HEPVVKEK--------VSVRCINPLCSGGMLEKIC-FFASKSALNIDHLGEKVVTKLFE- 456 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I +DIF L + GF D S+ NL SI + ++L+R + +L Sbjct: 457 ---VGLISSCSDIFALTEEDLK------QVPGFKDRSIQNLLASIAGAKKVALDRLLTAL 507 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I VG+ A +LA ++ + + L+ + +G +A +IV F+ Sbjct: 508 SIPFVGSSGAIALADHFGTLDKVIEA----------SLDELMSIEGIGPKVAASIVAFFS 557 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL---- 673 N + ++E+ + + + + ++ K VFTGTLQ++ R +A+E + L Sbjct: 558 KHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVFTGTLQQMTRTQAEERIRSLGGKV 616 Query: 674 -------GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 T +I G G KL+KAQ LG+ I NE + L +L Sbjct: 617 SSSVSKS-----------TYAVIAGSEAGGKLKKAQDLGLSIWNESELLRILD 658 >gi|282882908|ref|ZP_06291513.1| DNA ligase (NAD(+)) [Peptoniphilus lacrimalis 315-B] gi|281297319|gb|EFA89810.1| DNA ligase (NAD(+)) [Peptoniphilus lacrimalis 315-B] Length = 664 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 196/710 (27%), Positives = 344/710 (48%), Gaps = 59/710 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 QA +++ L +E++ + YY K +I D YD + + + P Sbjct: 2 QASEKMQKLVKELNRYGYYYYTLDKSLIDDKVYDRMYDELVNLEKE----ENIVLADSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFT 129 ++GG++ S K H P S+ K + ++LR +I + F + +++ + Sbjct: 58 TRVGGQILKSFQKHKHLNPLYSMNKAQSFDELRDWIEKNKNFIENYNESHEDKLSEMELI 117 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 LE K DG I + YE G A RG+G GE +++ ++ I +IP LS++ ++E++G Sbjct: 118 LELKFDGLTINLTYEDGYLKMATTRGNGLIGEVITSQVKTINSIP--LSIDYKGLVEIQG 175 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E + N + + N RNAA+G LR L+P + R L + + + Sbjct: 176 EGLMPLKSLEEYNKKA----SEKLKNARNAAAGALRNLDPKETKARNLTAYFYNVNYIEG 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K EM + ++ GF V+ + +F + N + IR LP IDG+ K+++ Sbjct: 232 KNFKDDVEMKEFLKSQGFLVSKYNYKVKSFKDVQEKINYIADIRKDLPIQIDGVTIKIND 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F ++ L + PRW I++KF + A ++LL++ +GR+ +TP A +EPV I G I Sbjct: 292 FKTREILSFTQKFPRWSIAYKFEAEIAESKLLEVVWNVGRSSKVTPSAIIEPVEIDGVTI 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATL+N D I + +R+ +L++R+ +VIP+++ ++ ++ Sbjct: 352 KRATLNNFDDINR-----------KKLRLNSNILIRRSNDVIPEILGVLPSD--EKTFAI 398 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C + + +D C L+C Q + RL HF SRDA NI G + Sbjct: 399 KRPKVCPACGAHLFQD--------GVHIFCPNTLSCRPQLVSRLVHFASRDAMNINGFSE 450 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ F ++ DI+ L+ + GF + NL ++I +N Sbjct: 451 KTIEKFMDE----LGLKEIPDIYNLKYDDIIK------LEGFKEKKTKNLLEAIENSKNP 500 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L FI+++GI +VG + AR LAK+Y ++ F++ + LI V +G I Sbjct: 501 FLSNFIYAIGIANVGIKTARDLAKHYKNFMAFSKA----------SFDDLIEVGDIGPIT 550 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A+ I+ F+ + ++ L + N + E K +V TG+L + +R + +E Sbjct: 551 AKEIINFFADDHIKDGLQKLFSYGIKVVYEENLNKDLKFEGKTVVITGSLSR-KRKELEE 609 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + GA VS+ +S+ TD +IVG+NPGSK +KA++L V+I+NEE+ +L Sbjct: 610 ELINNGAKVSSSVSKNTDFLIVGENPGSKYDKARELSVEILNEEELNKIL 659 >gi|146282220|ref|YP_001172373.1| NAD-dependent DNA ligase LigA [Pseudomonas stutzeri A1501] gi|145570425|gb|ABP79531.1| DNA ligase, NAD-dependent [Pseudomonas stutzeri A1501] Length = 802 Score = 435 bits (1119), Expect = e-119, Method: Composition-based stats. Identities = 222/657 (33%), Positives = 343/657 (52%), Gaps = 53/657 (8%) Query: 1 MKKRQLIPIEAL----SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCD 56 M+ P L S + A + ++ L EI H+ YY +P + D+EYD L Sbjct: 1 MRSESAQPQSRLRPMPSAQTAAERIAELRSEIDAHNYRYYVLDEPSVPDAEYDRLFNELK 60 Query: 57 AIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR 116 A+ P+L P P ++GG + +V H +P LSL + +DL F R+ Sbjct: 61 ALEAEHPELV---TPESPTQRVGGAALAAFGQVRHEVPMLSLGNAFEEQDLLDFDRRVRE 117 Query: 117 FWQKK------DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI 170 D + ++ EPK+DG +++ YE G V A RGDG +GED+SA +R + Sbjct: 118 GLDLPAGDLFGDGAVVEYSCEPKLDGLAVSLLYENGHLVRGATRGDGSTGEDISANVRTV 177 Query: 171 PTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP 229 IP L + P ++EVRGE+Y+ K F ALN + G KP+ANPRNAA+G LR+L+ Sbjct: 178 RNIPLKLHGSGWPAVLEVRGEIYMPKAGFEALNARQLESGGKPFANPRNAAAGSLRQLDS 237 Query: 230 T-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM 288 +R L +G+G++ +LQ ++ G P++ ++ A +YY+ + Sbjct: 238 KITASRPLELCAYGVGRSDGELPDTHIGILQALKGWGLPISRELKLAKGVAECRAYYDAI 297 Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348 + R LPY+IDG+V+KV+ Q++LG RAR PRW I+HKF ++ T LLD++ Q+GR Sbjct: 298 GAKRDALPYEIDGVVFKVNAVEQQRELGFRAREPRWAIAHKFPAREEITELLDVEFQVGR 357 Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408 TG +TPVARL+PV + G ++NATLHN D + L + +GD V+V+RAG+ Sbjct: 358 TGAITPVARLKPVQVAGVTVSNATLHNMDEVARL-----------GVMIGDTVIVRRAGD 406 Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGL 462 VIP+++ +I R DA+ P CP+C S V R ++ + +RC G L Sbjct: 407 VIPQILGVIAERRPTDARAVHVPEQCPVCGSAVERTQLIKRSKGRESVSEGSIYRCVGRL 466 Query: 463 ACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT 522 AC AQ + + HFVSR A +I+GLG + ++ +R PAD++ L Q Sbjct: 467 ACQAQLKQAIIHFVSRRAMDIDGLGDKIVEQLVDK----GLVRSPADLYCLTHEQVI--- 519 Query: 523 KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582 + GF ++S NL +I+ R SL RF+++LGI VG E A+ LA+ S + Sbjct: 520 ---ELEGFAEISTRNLLHAIDASRKPSLARFVYALGIPDVGEETAKLLARALGSLDRIGR 576 Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639 + ++ L+ +P VG +A I F+++ N + ALL+E Sbjct: 577 ALPDV----------LVYLPDVGLEVAHEIHSFFEDEHNRTVI-ALLRERGVEPQEQ 622 Score = 190 bits (482), Expect = 7e-46, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 103/253 (40%), Gaps = 17/253 (6%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R +++ +G+ D D + F + + T I + G Sbjct: 563 LLARALGSLDRIGRALPDVLVYLPDVGLEVAHEIHSFF---EDEHNRTVIALLRERGVEP 619 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 +L + L I H+ A+ LA+ + S + D Sbjct: 620 QEQGDVHPEFAACATLPDLLDRLNIPHIARTGAQRLAERFGSLEAIIAA----------D 669 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENK 650 WL L +V + + A+++ +++ P N +EA L+E K + + Sbjct: 670 WLDLRQVERLTEKAARSLRDYFDKPENAERARLIEAQLREFGMHWESERKAAEGLPLAGQ 729 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 V TGTL+ + R + + + LGA V+ +S KT ++ G GSKL KA +LGV +++ Sbjct: 730 TWVLTGTLETMSRDEGKARLEALGAKVAGSVSAKTTCVVAGPGAGSKLTKANELGVTVLD 789 Query: 711 EEQFLFLLQQYNT 723 E QF+ L Q + Sbjct: 790 ESQFIERLAQLGS 802 >gi|166216289|sp|A4VKN0|DNLJ_PSEU5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 788 Score = 435 bits (1119), Expect = e-119, Method: Composition-based stats. Identities = 219/641 (34%), Positives = 339/641 (52%), Gaps = 49/641 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S + A + ++ L EI H+ YY +P + D+EYD L A+ P+L P Sbjct: 3 SAQTAAERIAELRSEIDAHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPELV---TPE 59 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSI 126 P ++GG + +V H +P LSL + +DL F R+ D + Sbjct: 60 SPTQRVGGAALAAFGQVRHEVPMLSLGNAFEEQDLLDFDRRVREGLDLPAGDLFGDGAVV 119 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEII 185 ++ EPK+DG +++ YE G V A RGDG +GED+SA +R + IP L + P ++ Sbjct: 120 EYSCEPKLDGLAVSLLYENGHLVRGATRGDGSTGEDISANVRTVRNIPLKLHGSGWPAVL 179 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGE+Y+ K F ALN + G KP+ANPRNAA+G LR+L+ +R L +G+G Sbjct: 180 EVRGEIYMPKAGFEALNARQLESGGKPFANPRNAAAGSLRQLDSKITASRPLELCAYGVG 239 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 ++ +LQ ++ G P++ ++ A +YY+ + + R LPY+IDG+V+ Sbjct: 240 RSDGELPDTHIGILQALKGWGLPISRELKLAKGVAECRAYYDAIGAKRDALPYEIDGVVF 299 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ Q++LG RAR PRW I+HKF ++ T LLD++ Q+GRTG +TPVARL+PV + Sbjct: 300 KVNAVEQQRELGFRAREPRWAIAHKFPAREEITELLDVEFQVGRTGAITPVARLKPVQVA 359 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++NATLHN D + L + +GD V+V+RAG+VIP+++ +I R D Sbjct: 360 GVTVSNATLHNMDEVARL-----------GVMIGDTVIVRRAGDVIPQILGVIAERRPTD 408 Query: 425 AQPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 A+ P CP+C S V R ++ + +RC G LAC AQ + + HFVSR Sbjct: 409 ARAVHVPEQCPVCGSAVERTQLIKRSKGRESVSEGSIYRCVGRLACQAQLKQAIIHFVSR 468 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG + ++ +R PAD++ L Q + GF ++S NL Sbjct: 469 RAMDIDGLGDKIVEQLVDK----GLVRSPADLYCLTHEQVI------ELEGFAEISTRNL 518 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +I+ R SL RF+++LGI VG E A+ LA+ S + + ++ L Sbjct: 519 LHAIDASRKPSLARFVYALGIPDVGEETAKLLARALGSLDRIGRALPDV----------L 568 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639 + +P VG +A I F+++ N + ALL+E Sbjct: 569 VYLPDVGLEVAHEIHSFFEDEHNRTVI-ALLRERGVEPQEQ 608 Score = 190 bits (482), Expect = 7e-46, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 103/253 (40%), Gaps = 17/253 (6%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R +++ +G+ D D + F + + T I + G Sbjct: 549 LLARALGSLDRIGRALPDVLVYLPDVGLEVAHEIHSFF---EDEHNRTVIALLRERGVEP 605 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 +L + L I H+ A+ LA+ + S + D Sbjct: 606 QEQGDVHPEFAACATLPDLLDRLNIPHIARTGAQRLAERFGSLEAIIAA----------D 655 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENK 650 WL L +V + + A+++ +++ P N +EA L+E K + + Sbjct: 656 WLDLRQVERLTEKAARSLRDYFDKPENAERARLIEAQLREFGMHWESERKAAEGLPLAGQ 715 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 V TGTL+ + R + + + LGA V+ +S KT ++ G GSKL KA +LGV +++ Sbjct: 716 TWVLTGTLETMSRDEGKARLEALGAKVAGSVSAKTTCVVAGPGAGSKLTKANELGVTVLD 775 Query: 711 EEQFLFLLQQYNT 723 E QF+ L Q + Sbjct: 776 ESQFIERLAQLGS 788 >gi|170722763|ref|YP_001750451.1| NAD-dependent DNA ligase LigA [Pseudomonas putida W619] gi|254781396|sp|B1JC06|DNLJ_PSEPW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169760766|gb|ACA74082.1| DNA ligase, NAD-dependent [Pseudomonas putida W619] Length = 776 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 223/646 (34%), Positives = 345/646 (53%), Gaps = 48/646 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + +L E+ H+ YY +P + D+EYD L A+ P L P+ P Sbjct: 3 AESRIHALRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + +V H +P LSL + DLR+F R+ + ++ ++ EPK+DG Sbjct: 60 RVGGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVDGLDQP--GAVDYSCEPKLDG 117 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 +++ Y G+ V A RGDG +GED+SA +R + IP L P ++EVRGEV++SK Sbjct: 118 LAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVFMSK 177 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 F LN G K +ANPRNAA+G LR+L+ +R L F +G+G+ S + Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSASIGESH 237 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L++++ G P++ +R A ++YY ++ R++LPY+IDG+V+KV+ + Q++ Sbjct: 238 IGILEQLKAWGLPISRELRHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLASQRE 297 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG RAR PRW I+HKF + T +LD++ Q+GRTG +TPVARL+PV + G ++NATLH Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I L +R+GD V+++RAG+VIP+V+ +++ R DA+P PS C Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPEDARPVQVPSAC 406 Query: 435 PICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+C S+ V R +T A +RC G LAC AQ + + H+VSR A +I+GLG+ Sbjct: 407 PVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ I PAD++ LQ Q + GF +VS L D+I + Sbjct: 467 KSVEQLVDE----GLIGSPADLYKLQFDQIVG------LEGFAEVSSKKLLDAIEASKRP 516 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SL RFI++LGI VG E A+ LA+ S Q + + L +P +G + Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQV----------LTYLPDIGLEV 566 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENK 650 A I F+++ N +E LL E S+ + Sbjct: 567 AYEIHNFFEDEHNCKVIEQLLGCGMQLQDEGELAAEFAASTTLAGM 612 Score = 181 bits (459), Expect = 3e-43, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 94/255 (36%), Gaps = 19/255 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R ++ + + D + F + + IE +LG G Sbjct: 537 VLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFF---EDEHNCKVIEQLLGCGMQL 593 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + + +L I L I VG A L S D Sbjct: 594 QDEGELAAEFAASTTLAGMIAKLDIASVGPTGAEKLVAKLDSLDKIIAA------DGIDL 647 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA----LLKEVSPSIGRHEKNVSSEIENK 650 +L A+A+ EF+++ N LL + + + Sbjct: 648 RQALAA------KQAEAVREFFKDEANQKLARDIEAQLLAFGMHWNSEKKVAEGLPLAGQ 701 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 V TGTL+++ R A+E + LGA V+ +S KT ++ G GSKL KA +LGVK+++ Sbjct: 702 TWVLTGTLERMSRDIAKEKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKASELGVKVLD 761 Query: 711 EEQFLFLLQQYNTTL 725 E+ F+ L + + Sbjct: 762 EDAFVVFLDEQGIAI 776 >gi|295090337|emb|CBK76444.1| DNA ligase, NAD-dependent [Clostridium cf. saccharolyticum K10] Length = 676 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 190/716 (26%), Positives = 314/716 (43%), Gaps = 61/716 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 ++ A ++ L Q ++ H YY + P I D+EYD + + + + N Sbjct: 11 TMNTA-DKIKELVQTLNRHRHAYYNLNAPEISDAEYDRMYDQLERLEEE----TGIIYSN 65 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +G L KV H P LSL+K +EDL +F Sbjct: 66 SPTQTVGYPPVSELKKVPHPHPLLSLDKTKQVEDLYRFCNGHAALL------------ML 113 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG + + YE G+ + AA RGDG GE+++ I IP + + E + V GE + Sbjct: 114 KLDGLTVKLTYENGRLMEAATRGDGEIGEEITHNIPTFENIPLTV--SYKERLVVTGEAF 171 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL--GKTSEI 249 I K DF LN + KPY N RN A+G +R L+P R + F + G Sbjct: 172 IRKKDFERLNLTIRDKDGKPYKNARNLAAGSVRSLDPENCKGRCVTFLPFNVLEGLDEGE 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV---SYYNEMKSIRSTLPYDIDGLVYKV 306 + + E L ++ LGF + ++K L IDG+V Sbjct: 232 HSNSREERLYQLSKLGFGSCPYIPLNPDQVSPEYLELRIQDLKEKAEMLDLPIDGMVLIF 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ + G + ++ KF ++ T L I+ R G L PVA + V+I G Sbjct: 292 DDLAYSASRGRTGHHYKDGLAFKFEDETYETTLQSIEWTPSRFGELAPVAVFDTVDIDGC 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ ATLHN +I+ L+ G R+LV + +IP + D + R+ DA Sbjct: 352 SVSRATLHNLTFIRELELVS-----------GCRILVSKRNMIIPHIEDNLDRGRYQDA- 399 Query: 427 PFSFPSFCPICQSRVV-RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ CP C + R + G+++ C+ +C QQL++ HFV R A NIEG Sbjct: 400 ---APAICPCCGAPTELRRKTAENGRIIETVHCSNP-SCEIQQLKKFVHFVCRKAMNIEG 455 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 L + L+ F +R DI+ L + + +I + GFG+ S L+++I Sbjct: 456 LSEATLEKFLN----LGYLRTFHDIYHLDQHRD----EIIRLDGFGEKSFDRLWNAIQAS 507 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 RN + R++ S+ I VG +R L + + +F D ++ Sbjct: 508 RNTTFVRYLISMDIPMVGRTKSRVLDTIFSGNLDDFRAA--------AIDDYDFSQLEDF 559 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQ 662 G + + I +++ + N+ + L KE + + E + K +V TG L+ Sbjct: 560 GATLNRNIHDWFADEENLALWDTLQKEFTFEERKEETIMAKDNVFAGKTIVATGKLENFT 619 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R + + + ++GA + ++ KTD +I G+ GSKL KA+ LG+ I++E +FL + Sbjct: 620 RSEINDKILEIGAKPGSSVTGKTDYLICGEKAGSKLAKAKSLGITILSEAEFLAKI 675 >gi|330808456|ref|YP_004352918.1| DNA ligase (NAD(+)) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376564|gb|AEA67914.1| DNA ligase (NAD(+)) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 785 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 216/633 (34%), Positives = 333/633 (52%), Gaps = 48/633 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + L E+ H+ Y+ +P I D+EYD L A+ P+L S + Sbjct: 1 MNAVETRIQQLRTELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEEQHPELVTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127 P ++G + +V H IP LSL ++ +R+F R+ ++ Sbjct: 58 PTQRVGSVALSAFSQVRHEIPMLSLGNAFDETTMREFDRRVTEGLDLPMGDLLGGGAAVE 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++ Y+ G V A RGDG +GED+S +R + IP L + P ++E Sbjct: 118 YSCEPKLDGLAVSLLYQDGMLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPPLLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY+SK F LN + G K +ANPRNAA+G LR+L+ R L F +G+G+ Sbjct: 178 VRGEVYMSKAGFERLNATQLEAGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQ 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + A L++++ G P++ ++ A+ + YY ++ R+ LPY+IDG+V+K Sbjct: 238 VTADIADTHIGNLKQLKAWGLPISRELKLAHGIDECLDYYRDIGERRNALPYEIDGVVFK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G Sbjct: 298 VNSIASQRELGFRAREPRWAIAHKFPASEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + NATLHN D + L + +GD V+++RAG+VIP+VV +I R DA Sbjct: 358 VTVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVITERRPDDA 406 Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +P P CP+C S V R +T A +RC G LAC AQ + + HFVSR Sbjct: 407 RPVEIPRQCPVCGSHVERTQLIKRSKGRETISEGAVYRCVGRLACGAQLKQAIIHFVSRR 466 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG++ ++ + PAD++ L Q + GF ++S NL Sbjct: 467 AMDIEGLGEKSVEQLVDE----GLVGSPADLYALTFEQVVD------LEGFAELSSKNLL 516 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I + SL RFI++LGI VG E A+ LA+ S + + + L Sbjct: 517 AAIVDSKKPSLARFIYALGIPDVGEETAKVLARSLGSLERVQAAVPQV----------LT 566 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632 +P VG +A I F+++P N ++ LL+ Sbjct: 567 YLPDVGLEVAHEIHSFFEDPHNRQVIKDLLRHG 599 Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 97/256 (37%), Gaps = 21/256 (8%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R ++E + D + F + I+++L G Sbjct: 546 VLARSLGSLERVQAAVPQVLTYLPDVGLEVAHEIHSFF---EDPHNRQVIKDLLRHGLEI 602 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + +L F+ L I VG A+ LA + S + D Sbjct: 603 QDQGELGAEFSASTTLGGFLDKLNIPSVGPGGAQKLADKFGSLEAVMNA----------D 652 Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRNICAVE----ALLKEVSPSIGRHEKNVSSEIEN 649 WL + +P + A A+ EF+ N E L + Sbjct: 653 WLDMRQALP---EKQANAVREFFAVAANRQQAEAAEQQLRDFGMHWQSEKKVVEGLPEAG 709 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 V TG+L+ + R A++ + LGA V+ +S KT ++ G GSKL KA +LG+K++ Sbjct: 710 HTWVLTGSLELMSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGLKVL 769 Query: 710 NEEQFLFLLQQYNTTL 725 +EE F+ L Q+ T+ Sbjct: 770 DEEAFVVFLSQHGITV 785 >gi|300813320|ref|ZP_07093675.1| DNA ligase (NAD(+)) [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512591|gb|EFK39736.1| DNA ligase (NAD(+)) [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 664 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 196/710 (27%), Positives = 344/710 (48%), Gaps = 59/710 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 QA +++ L +E++ + YY K +I D YD + + + P Sbjct: 2 QASEKMQKLVKELNRYGYYYYTLDKSLIDDKVYDRIYDELVNLEKE----ENIVLADSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFT 129 ++GG++ S K H P S+ K + ++LR +I + F + +++ + Sbjct: 58 TRVGGQILKSFQKHKHLNPLYSMNKAQSFDELRDWIEKNKNFIENYNESHEDKLSEMELI 117 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 LE K DG I + YE G A RG+G GE +++ ++ I +IP LS++ ++E++G Sbjct: 118 LELKFDGLTINLTYEDGYLKMATTRGNGLIGEVITSQVKTINSIP--LSIDYKGLVEIQG 175 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E + N + + N RNAA+G LR L+P + R L + + + Sbjct: 176 EGLMPLKSLEEYNKKA----SEKLKNARNAAAGALRNLDPKETKARNLTAYFYNVNYIEG 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K EM ++ GF V+ + +F + N + IR LP IDG+ K+++ Sbjct: 232 KNFKDDVEMKAFLKSQGFLVSKYNYKVKSFKDVQEKINYIADIRKDLPIQIDGVTIKIND 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F ++ L + PRW I++KF + A ++LL++ +GR+ +TP A +EPV I G I Sbjct: 292 FKTREILSFTQKFPRWSIAYKFEAEIAESKLLEVVWNVGRSSKVTPSAIIEPVEIDGVTI 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATL+N D I + +R+ +L++R+ +VIP+++ ++ ++ Sbjct: 352 KRATLNNFDDINR-----------KKLRLNSNILIRRSNDVIPEILGVLPSD--EKTFAI 398 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C + + +D C L+C Q + RL HF SRDA NI G + Sbjct: 399 KRPEVCPACGAHLFQD--------GVHIFCPNTLSCRPQLVSRLVHFASRDAMNINGFSE 450 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ F ++ DI+ L+ + GF + NL ++I +N Sbjct: 451 KTIEKFMDE----LGLKEIPDIYNLKYDDIIK------LEGFKEKKTKNLLEAIENSKNP 500 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L FI+++GI +VG + AR LAK+Y ++ F++ + LI V +G I Sbjct: 501 FLSNFIYAIGIANVGIKTARDLAKHYKNFMAFSKA----------SFDDLIEVGDIGPIT 550 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A+ I+ F+++ ++ L + N + E K +V TG+L + +R + +E Sbjct: 551 AKEIINFFEDDHIKDGLQKLFSYGIDVVYEENLNKDLKFEGKTVVITGSLSR-KRKELEE 609 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + GA VS+ +S+ TD +IVG+NPGSK +KA++L V+I+NEE+ +L Sbjct: 610 ELINNGAKVSSSVSKNTDFLIVGENPGSKYDKARELSVEILNEEELNKIL 659 >gi|70729275|ref|YP_259012.1| NAD-dependent DNA ligase LigA [Pseudomonas fluorescens Pf-5] gi|123734866|sp|Q4KFH1|DNLJ_PSEF5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|68343574|gb|AAY91180.1| DNA ligase, NAD-dependent [Pseudomonas fluorescens Pf-5] Length = 788 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 220/632 (34%), Positives = 334/632 (52%), Gaps = 48/632 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + A + L E+ H+ Y+ +P I D+EYD L R A+ P+L S + Sbjct: 1 MTAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFRELKALEAEHPELVTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127 P ++G + +V H IP LSL + D+R+F R+ + ++ Sbjct: 58 PTQRVGSAALSAFTQVRHEIPMLSLGNAFEEVDMREFDRRVNEGLDLPAGDLFGGGAAVE 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++ Y+ G V A RGDG +GED+S +R + IP L + P +E Sbjct: 118 YSCEPKLDGLAVSLLYQDGVLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPATLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV++SK F LN + G K +ANPRNAA+G LR+L+ +R L F +GLG+ Sbjct: 178 VRGEVFMSKAGFERLNAAQLEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGLGQ 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S A L++++ G P++ +R A + YY E+ R+ LPY+IDG+V+K Sbjct: 238 VSADIADTHIGNLERLKQWGMPISRELRLAKGIDECLDYYREIGERRNALPYEIDGVVFK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G Sbjct: 298 VNSIASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLQPVKVAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++NATLHN D + L + +GD V+++RAG+VIP+VV ++ R +A Sbjct: 358 VTVSNATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVTERRPENA 406 Query: 426 QPFSFPSFCPICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +P P CP+C S V R +T A +RC G LAC AQ + + HFVSR Sbjct: 407 RPVQIPESCPVCGSHVERTQLVKRSKGRETVSEGAVYRCVGRLACGAQLKQAIIHFVSRR 466 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG + ++ I PAD++ L+ Q + GF +VS L Sbjct: 467 AMDIEGLGDKTIEQLVDEN----LIASPADLYRLKYEQIID------LEGFAEVSSNKLL 516 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I + +L RFI++LGI VG E A+ LA+ S + Q + + L Sbjct: 517 KAIEDSKRPALARFIYALGIPDVGEETAKVLARSLGSLERVQQALPQV----------LT 566 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 +P VG +A I F+++ N + +LL Sbjct: 567 YLPDVGLEVAHEIHSFFEDSHNQEVIGSLLAA 598 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 56/253 (22%), Positives = 98/253 (38%), Gaps = 18/253 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R ++E + + D + F Q + G V Sbjct: 546 VLARSLGSLERVQQALPQVLTYLPDVGLEVAHEIHSFFEDSHNQEVIGSLLAADQCGLVL 605 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + +L + L I VG A+ LA + S Q + D Sbjct: 606 QDQGELGAEFAASTTLGGMLDKLNIPSVGPGAAQKLADKFGSLQGVIEA----------D 655 Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRN----ICAVEALLKEVSPSIGRHEKNVSSEIEN 649 WL + +P + A+A+ EF+ NP N + L + + Sbjct: 656 WLDMRQALP---EKQAKAVREFFDNPANAQLAQAIEQQLQAFGMHWQSEKKVVAGLPLAG 712 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 + V TG+L+ + R A++ + LGA V+ +S KT ++ G GSKL KA +LG+K++ Sbjct: 713 QTWVLTGSLELMSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGLKVL 772 Query: 710 NEEQFLFLLQQYN 722 +EE F+ L ++ Sbjct: 773 DEEAFVAFLTEHG 785 >gi|237799321|ref|ZP_04587782.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022177|gb|EGI02234.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str. 1_6] Length = 703 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 221/656 (33%), Positives = 336/656 (51%), Gaps = 53/656 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + L E+ H+ Y+ +P I D EYD L A+ P L P+ Sbjct: 1 MKAVETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127 P ++G + +V H +P LSL + DLR+F R+ + + Sbjct: 58 PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGGKVQ 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP L P ++E Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPGVLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV++SK F LN + VG K +ANPRNAA+G LR+L+ R L F +GLG+ Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 TS A +L ++ G PV+ ++ A+ ++YY ++ R TL Y+IDG+V+K Sbjct: 238 TSAEIADTHIGVLNALKKWGMPVSRELKLADGVEECLAYYRDIGERRLTLSYEIDGVVFK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++ R A Sbjct: 358 VMVANATLHNMDEVARL-----------GVMIGDTVIIRRAGDVIPQVVQVVAERRPDTA 406 Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +P P CP+C S V R +T A +RC G LAC AQ + + H+VSR Sbjct: 407 RPVEVPQTCPVCGSHVERTQLIKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHYVSRR 466 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +I GLG + ++ + I PAD++ L+ Q + GF ++S L Sbjct: 467 AMDIGGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I R +L RFI++LGI VG E A+ LA+ S Q + + L Sbjct: 517 KAITDSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650 +P VG +A I F+++ N ++ALL E + + S+ +E Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622 Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 19/173 (10%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R +++ + + + D + F + + G Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLQL 603 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + +LE I L I VG A LA+ + + + D Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPLVGPGAALKLAEKFGTLEAIIGA----------D 653 Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNV 643 WL + +P + A+++ +F+ + N A+EA LK+ +K V Sbjct: 654 WLDMRQALP---EKQAKSVRDFFDDSANAERARAIEAQLKDFGMHWRSEKKTV 703 >gi|255310946|ref|ZP_05353516.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 6276] gi|255317247|ref|ZP_05358493.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 6276s] gi|296435662|gb|ADH17836.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/9768] gi|296436585|gb|ADH18755.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/11222] gi|296437522|gb|ADH19683.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/11074] gi|297140021|gb|ADH96779.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/9301] Length = 663 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 222/714 (31%), Positives = 352/714 (49%), Gaps = 73/714 (10%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R + +L E+ HD YY ++P I D YD R I P+ S P Sbjct: 6 RDDYIALCTELVEHDRRYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSW---SPTMY 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + V HS P LS+ ++++++L +F +R + S ++LE KIDG Sbjct: 63 LGDRPSGQFPVVPHSSPMLSIANVYSLQELEEFFSRTEKLLG----YSPGYSLELKIDGI 118 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + IRYEK F A RG+G GED++A + I ++P L PE +EVRGEV++S Sbjct: 119 AVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSYEA 178 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN G+ +ANPRNAA G L+ L+ + R L+ V+GL + + +E Sbjct: 179 FEELNACQREQGKLEFANPRNAAGGTLKLLSSKEAAKRKLDLSVYGLITEQKKRS--HFE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 LQ GF V +Q + +V E++ +R LP IDG+V KVD + Q +LG Sbjct: 237 NLQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRVALPMAIDGVVIKVDNIAHQDRLG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++ RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+N+ Sbjct: 297 LTSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLYNQ 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ +DIR+GD V V++ GEVIPK+V I + +R +++P+ PS CP+ Sbjct: 357 DEIEK-----------KDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C VV++ + RC L + F S+ A NI+ LG++ + F+ Sbjct: 406 CHEPVVKEK--------VSVRCINPLCSGGMLEKIC-FFASKSALNIDHLGEKVVTKLFE 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I +DIF L + GF D S+ NL SI + ++L+R + + Sbjct: 457 ----VGLISSCSDIFALTEEDLK------QVPGFKDRSIQNLLASIAGAKKVTLDRLLTA 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 L I VG+ A +LA ++ + + L+ + +G +A +IV F+ Sbjct: 507 LSIPFVGSSGAIALADHFGTLDKVIEA----------SLDELMSIEGIGPKVAASIVAFF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL--- 673 N + ++E+ + + + + ++ K V TGTLQ++ R +A+E + L Sbjct: 557 SKHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRSLGGK 615 Query: 674 --------GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 T +I G G KL+KAQ LG+ I NE + L +L Sbjct: 616 VSSSVSKS-----------TYAVIAGSEAGGKLKKAQDLGLSIWNESELLRILD 658 >gi|331015921|gb|EGH95977.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 787 Score = 433 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 223/656 (33%), Positives = 341/656 (51%), Gaps = 53/656 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ A + L E+ H+ Y+ +P I D+EYD L A+ P L P+ Sbjct: 1 MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127 P ++G + +V H + LSL + DLR+F R+ + + Sbjct: 58 PTQRVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGGKVQ 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP L PE++E Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPELLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV++SK F LN + VG K +ANPRNAA+G LR+L+ R L F +GLG+ Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 TS A +L+ ++ G PV+ ++ A+ ++YY ++ R +L Y+IDG+V+K Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVFK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++V R A Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVVERRPETA 406 Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +P P CP+C S V R +T A +RC G LAC AQ + + H+VSR Sbjct: 407 KPVEVPQSCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG + ++ + I PAD++ L+ Q + GF ++S L Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I R +L RFI++LGI VG E A+ LA+ S Q + + L Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650 +P VG +A I F+++ N ++ALL E + + S+ +E Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622 Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 104/257 (40%), Gaps = 20/257 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R +++ + + + D + F + + G Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLQL 603 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + +LE I L I VG A+ LA + + + D Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAVISA----------D 653 Query: 595 WLSLIR-VPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649 WL + + +P + A+++ +F+ + N A+EA LK+ +K V + Sbjct: 654 WLDMRQTLP---EKQAKSVRDFFDDNANAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 710 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 + V TG+L+++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ ++ Sbjct: 711 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770 Query: 710 NEEQFLFLLQQYNTTLR 726 +EE L L + + Sbjct: 771 DEEALLKRLTELGVAID 787 >gi|28870811|ref|NP_793430.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. tomato str. DC3000] gi|81730313|sp|Q87YY6|DNLJ_PSESM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|28854060|gb|AAO57125.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato str. DC3000] Length = 787 Score = 433 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 223/656 (33%), Positives = 341/656 (51%), Gaps = 53/656 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ A + L E+ H+ Y+ +P I D+EYD L A+ P L P+ Sbjct: 1 MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127 P ++G + +V H + LSL + DLR+F R+ + + Sbjct: 58 PTQRVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGGKVQ 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP L PE++E Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPELLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV++SK F LN + VG K +ANPRNAA+G LR+L+ R L F +GLG+ Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 TS A +L+ ++ G PV+ ++ A+ ++YY ++ R +L Y+IDG+V+K Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVFK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++V R A Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVVERRPETA 406 Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +P P CP+C S V R +T A +RC G LAC AQ + + H+VSR Sbjct: 407 KPVEVPQSCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG + ++ + I PAD++ L+ Q + GF ++S L Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I R +L RFI++LGI VG E A+ LA+ S Q + + L Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650 +P VG +A I F+++ N ++ALL E + + S+ +E Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622 Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 104/257 (40%), Gaps = 20/257 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R +++ + + + D + F + + G Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLQL 603 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + +LE I L I VG A+ LA + + + D Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAVISA----------D 653 Query: 595 WLSLIR-VPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649 WL + + +P + A+++ +F+ + N A+EA LK+ +K V + Sbjct: 654 WLDMRQTLP---EKQAKSVRDFFDDNANAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 710 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 + V TG+L+++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ ++ Sbjct: 711 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770 Query: 710 NEEQFLFLLQQYNTTLR 726 +EE L L + + Sbjct: 771 DEEALLKRLTELGVAVD 787 >gi|213968905|ref|ZP_03397045.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1] gi|301385372|ref|ZP_07233790.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tomato Max13] gi|302063632|ref|ZP_07255173.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tomato K40] gi|302133897|ref|ZP_07259887.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926204|gb|EEB59759.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1] Length = 787 Score = 433 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 224/656 (34%), Positives = 341/656 (51%), Gaps = 53/656 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ A + L E+ H+ Y+ +P I D+EYD L A+ P L P+ Sbjct: 1 MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127 P ++G + +V H + LSL + DLR+F R+ + + Sbjct: 58 PTQRVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGGKVQ 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP L PE++E Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPELLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV++SK F LN + VG K +ANPRNAA+G LR+L+ R L F +GLG+ Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 TS A +L+ ++ G PV+ ++ A+ ++YY ++ R +L Y+IDG+V+K Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVFK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++V R A Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVVERRPETA 406 Query: 426 QPFSFPSFCPICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +P P CP+C S V R +T A +RC G LAC AQ + + H+VSR Sbjct: 407 KPVEVPQSCPVCGSHVERTQLVKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG + ++ + I PAD++ L+ Q + GF ++S L Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I R +L RFI++LGI VG E A+ LA+ S Q + + L Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650 +P VG +A I F+++ N +EALL E + + S+ +E Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIEALLGECGLQLQDQGELGAEFAASTTLEGL 622 Score = 171 bits (434), Expect = 3e-40, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 104/257 (40%), Gaps = 20/257 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R +++ + + + D + F + + G Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIEALLGECGLQL 603 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + +LE I L I VG A+ LA + + + D Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAVISA----------D 653 Query: 595 WLSLIR-VPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649 WL + + +P + A+++ +F+ + N A+EA LK+ +K V + Sbjct: 654 WLDMRQTLP---EKQAKSVRDFFDDNANAERARAIEAQLKDFGMHWRSEKKAVEGLPLAG 710 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 + V TG+L+++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ ++ Sbjct: 711 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770 Query: 710 NEEQFLFLLQQYNTTLR 726 +EE L L + + Sbjct: 771 DEEALLKRLTELGVAVD 787 >gi|330963250|gb|EGH63510.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. actinidiae str. M302091] Length = 787 Score = 432 bits (1111), Expect = e-118, Method: Composition-based stats. Identities = 223/656 (33%), Positives = 342/656 (52%), Gaps = 53/656 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ A + L E+ H+ Y+ +P I D+EYD L A+ P L P+ Sbjct: 1 MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127 P ++G + +V H + LSL + DLR+F R+ + + + Sbjct: 58 PTQRVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGSKVQ 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP L PE++E Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPELLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV++SK F LN + VG K +ANPRNAA+G LR+L+ R L F +GLG+ Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 TS A +L+ ++ G PV+ ++ A+ ++YY ++ R +L Y+IDG+V+K Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVFK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++V R A Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVVERRPETA 406 Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +P P CP+C S V R +T A +RC G LAC AQ + + H+VSR Sbjct: 407 KPVEVPQSCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG + ++ + I PAD++ L+ Q + GF ++S L Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I R +L RFI++LGI VG E A+ LA+ S Q + + L Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650 +P VG +A I F+++ N ++ALL E + + S+ +E Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622 Score = 171 bits (434), Expect = 3e-40, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 103/257 (40%), Gaps = 20/257 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R +++ + + + D + F + + G Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLQL 603 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + +LE I L I VG A+ LA + + + D Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAVIGA----------D 653 Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649 WL + +P + A+++ +F+ + N A+EA LK+ +K V + Sbjct: 654 WLDMRQALP---EKQAKSVRDFFDDNANAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 710 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 + V TG+L+++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ ++ Sbjct: 711 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770 Query: 710 NEEQFLFLLQQYNTTLR 726 +E+ L L + + Sbjct: 771 DEDALLKRLTELGVAVD 787 >gi|71737941|ref|YP_274013.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. phaseolicola 1448A] gi|123775130|sp|Q48KR2|DNLJ_PSE14 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|71558494|gb|AAZ37705.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. phaseolicola 1448A] gi|320329466|gb|EFW85458.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea str. race 4] Length = 787 Score = 432 bits (1110), Expect = e-118, Method: Composition-based stats. Identities = 219/656 (33%), Positives = 338/656 (51%), Gaps = 53/656 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + L E+ H+ Y+ +P I D EYD L A+ P L P+ Sbjct: 1 MKAVETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127 P ++G + +V H +P LSL + D+ +F R+ + + Sbjct: 58 PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQ 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP L P+++E Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV++SK F LN + +G K +ANPRNAA+G LR+L+ R L F +GLG+ Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 TS A +L+ ++ G PV++ ++ AN + YY ++ R TL Y+IDG+V+K Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSHELKLANGVEECLDYYRDIGERRLTLSYEIDGVVFK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++ R +A Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406 Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 + P CP+C S V R +T A +RC G LAC AQ + + H+VSR Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG + ++ + I PAD++ L+ Q + GF ++S L Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I R +L RFI++LGI VG E A+ LA+ S Q + + L Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650 +P VG +A I F+++ N ++ALL E + + S+ +E Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622 Score = 171 bits (433), Expect = 4e-40, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 104/257 (40%), Gaps = 20/257 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R +++ + + + D + F + + G Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLQL 603 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + +LE I L I VG A+ LA + + + D Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISA----------D 653 Query: 595 WLSLIR-VPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649 WL + + +P + A+++ +F+ + + A+EA LK+ +K V + Sbjct: 654 WLDMRQTLP---EKQAKSVRDFFDDSAHAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 710 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 + V TG+L+++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ ++ Sbjct: 711 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770 Query: 710 NEEQFLFLLQQYNTTLR 726 +E+ L L + + Sbjct: 771 DEDALLKRLTELGVAVD 787 >gi|330973309|gb|EGH73375.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aceris str. M302273PT] Length = 670 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 218/656 (33%), Positives = 339/656 (51%), Gaps = 53/656 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + L E+ H+ Y+ +P I D EYD L A+ P L P+ Sbjct: 1 MKAVETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127 P ++G + +V H +P LSL + D+ +F R+ + + Sbjct: 58 PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGGKVQ 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP L P+++E Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV++SK F LN + +G K +ANPRNAA+G LR+L+ R L F +GLG+ Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 TS A +L+ ++ G PV+ ++ AN ++YY ++ R L Y+IDG+V+K Sbjct: 238 TSAEIADTHIGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEIDGVVFK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++ R +A Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406 Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 + P CP+C S V R +T A +RC G LAC AQ + + H+VSR Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG + ++ + I PAD++ L+ Q + GF ++S L Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 ++I R +L RFI++LGI VG E A+ LA+ S + Q + + L Sbjct: 517 NAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEV----------LT 566 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650 +P VG +A I F+++ N ++ALL E + + S+ +E Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRSVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622 >gi|255348508|ref|ZP_05380515.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 70] gi|255503049|ref|ZP_05381439.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 70s] gi|255506721|ref|ZP_05382360.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis D(s)2923] gi|296434735|gb|ADH16913.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis E/150] gi|296438453|gb|ADH20606.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis E/11023] Length = 663 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 219/713 (30%), Positives = 350/713 (49%), Gaps = 71/713 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R + +L E+ HD CYY ++P I D YD R I P+ S P Sbjct: 6 RDDYIALCTELVEHDRCYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSW---SPTMY 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + V HS P LS+ ++++++L +F +R + S ++LE KIDG Sbjct: 63 LGDRPSGQFPVVPHSSPMLSIANVYSLQELEEFFSRTEKLLG----YSPGYSLELKIDGI 118 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + IRYEK F A RG+G GED++A + I ++P L PE +EVRGEV++S Sbjct: 119 AVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSYEA 178 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F LN G+ +ANPRNAA G L+ L+ + + G ++ + +E Sbjct: 179 FEELNACQREQGKLEFANPRNAAGGTLKLLSSKEA-AKRKLDLSVYGLITDQKKRSHFEN 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 LQ GF V +Q + +V E++ +R+ LP IDG+V KVD + Q +LG Sbjct: 238 LQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRAALPMAIDGVVIKVDNIAHQDRLGL 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++ RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+N+D Sbjct: 298 TSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLYNQD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ +DIR+GD V V++ GEVIPK+V I + +R +++P+ PS CP+C Sbjct: 358 EIEK-----------KDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLCPVC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 VV++ + RC L + F S+ A NI+ LG++ + F+ Sbjct: 407 HEPVVKEK--------VSVRCINPLCSGGMLEKIC-FFASKSALNIDHLGEKVVTKLFE- 456 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I +DIF L + GF D S+ NL SI + ++L+R + +L Sbjct: 457 ---VGLISSCSDIFALTEEDLK------QVPGFKDRSIQNLLASIAGAKKVALDRLLTAL 507 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I VG+ A +LA ++ + + L+ + +G +A +IV F+ Sbjct: 508 SIPFVGSSGAIALADHFGTLDKVIEA----------SLDELMSIEGIGPKVAASIVAFFS 557 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL---- 673 N + ++E+ + + + + ++ K V TGTLQ++ R +A+E + L Sbjct: 558 KHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRSLGGKV 616 Query: 674 -------GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 T +I G G KL+KAQ LG+ I NE + L +L Sbjct: 617 SSSVSKS-----------TYAVIAGSEAGGKLKKAQDLGLSIWNESELLRILD 658 >gi|330879146|gb|EGH13295.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 787 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 223/656 (33%), Positives = 342/656 (52%), Gaps = 53/656 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ A + L E+ H+ Y+ +P I D+EYD L A+ P L P+ Sbjct: 1 MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127 P ++G + +V H + LSL + DLR+F R+ + + + Sbjct: 58 PTQRVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGSKVQ 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP L PE++E Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGATGEDISVNVRTVRNIPLKLQGKGWPELLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV++SK F LN + VG K +ANPRNAA+G LR+L+ R L F +GLG+ Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 TS A +L+ ++ G PV+ ++ A+ ++YY ++ R +L Y+IDG+V+K Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVFK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++V R A Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVVERRPETA 406 Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +P P CP+C S V R +T A +RC G LAC AQ + + H+VSR Sbjct: 407 KPVEVPQSCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG + ++ + I PAD++ L+ Q + GF ++S L Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I R +L RFI++LGI VG E A+ LA+ S Q + + L Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650 +P VG +A I F+++ N ++ALL E + + S+ +E Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622 Score = 171 bits (434), Expect = 3e-40, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 102/257 (39%), Gaps = 20/257 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R +++ + + + D + F + + G Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLQL 603 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + +LE I L I VG A+ LA + + D Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLDAVIGA----------D 653 Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649 WL + +P + A+++ +F+ + N A+EA LK+ +K V + Sbjct: 654 WLDMRQALP---EKQAKSVRDFFDDNANAERARAIEAQLKDFGMHWRSEKKAVEGLPLAG 710 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 + V TG+L+++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ ++ Sbjct: 711 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770 Query: 710 NEEQFLFLLQQYNTTLR 726 +E+ L L + + Sbjct: 771 DEDALLKRLTELGVAVD 787 >gi|66045063|ref|YP_234904.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae B728a] gi|75502608|sp|Q4ZVF6|DNLJ_PSEU2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|63255770|gb|AAY36866.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. syringae B728a] Length = 787 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 219/656 (33%), Positives = 339/656 (51%), Gaps = 53/656 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + L E+ H+ Y+ +P I D EYD L A+ P L P+ Sbjct: 1 MKAVETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127 P ++G + +V H +P LSL + D+ +F R+ + + Sbjct: 58 PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGGKVQ 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP L P+++E Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV++SK F LN + +G K +ANPRNAA+G LR+L+ R L F +GLG+ Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 TS A +L+ ++ G PV+ ++ AN ++YY ++ R TL Y+IDG+V+K Sbjct: 238 TSAEIADTHIGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLTLTYEIDGVVFK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++ R +A Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406 Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 + P CP+C S V R +T A +RC G LAC AQ + + H+VSR Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG + ++ + I PAD++ L+ Q + GF ++S L Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I R +L RFI++LGI VG E A+ LA+ S + Q + + L Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEV----------LT 566 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650 +P VG +A I F+++ N ++ALL E + + S+ +E Sbjct: 567 YLPDVGLEVAYEIRSFFEDEHNRSVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622 Score = 171 bits (433), Expect = 3e-40, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 104/257 (40%), Gaps = 20/257 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R ++E + + + D + F + + + G Sbjct: 546 VLARSLASLERVKQALPEVLTYLPDVGLEVAYEIRSF--FEDEHNRSVIDALLGECGLQL 603 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + +LE I L I VG A+ LA + + + D Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISA----------D 653 Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649 WL + +P + A+++ +F+ + N A+EA LK+ +K V + Sbjct: 654 WLDMRQALP---EKQAKSVRDFFDDSANAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 710 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 + V TG+L+++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ ++ Sbjct: 711 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770 Query: 710 NEEQFLFLLQQYNTTLR 726 +E+ L L + + Sbjct: 771 DEDALLKRLIELGVAVD 787 >gi|302185110|ref|ZP_07261783.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae 642] Length = 787 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 218/656 (33%), Positives = 339/656 (51%), Gaps = 53/656 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + L ++ H+ Y+ +P I D EYD L A+ P L P+ Sbjct: 1 MKAVETRILELRAQLDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127 P ++G + +V H +P LSL + D+ +F R+ + + + Sbjct: 58 PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGSKVQ 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP L PE++E Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPEVLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV++SK F LN + +G K +ANPRNAA+G LR+L+ R L F +GLG+ Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 TS A +L+ ++ G PV+ ++ AN ++YY ++ R L Y+IDG+V+K Sbjct: 238 TSADIADTHIGVLETLKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEIDGVVFK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++ R +A Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406 Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 + P CP+C S V R +T A +RC G LAC AQ + + H+VSR Sbjct: 407 KAVHVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG + ++ + I PAD++ L+ Q + GF ++S L Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I R +L RFI++LGI VG E A+ LA+ S + Q + + L Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEV----------LT 566 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650 +P VG +A I F+++ N ++ALL E + + S+ +E Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 104/257 (40%), Gaps = 20/257 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R ++E + + + D + F + + G Sbjct: 546 VLARSLASLERVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLQL 603 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + +LE I L I VG A+ LA + + + D Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISA----------D 653 Query: 595 WLSLIR-VPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649 WL + + +P + A+++ +F+ + + A+EA LK+ +K V + Sbjct: 654 WLDMRQTLP---EKQAKSVRDFFDDSVHAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 710 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 + V TG+L+++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ ++ Sbjct: 711 QTWVLTGSLERMSRDIAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770 Query: 710 NEEQFLFLLQQYNTTLR 726 +E+ L L + + Sbjct: 771 DEDALLKRLTELGVAVD 787 >gi|320323491|gb|EFW79576.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea str. B076] Length = 787 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 219/656 (33%), Positives = 337/656 (51%), Gaps = 53/656 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + L E+ H+ Y+ +P I D EYD L A+ P L P+ Sbjct: 1 MKAVETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127 P ++G + +V H +P LSL + D+ +F R+ + + Sbjct: 58 PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQ 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP L P+++E Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV++SK F LN + +G K +ANPRNAA+G LR+L+ R L F +GLG+ Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 TS A +L+ ++ G PV++ ++ AN + YY ++ R TL Y+IDG+V+K Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSHELKLANGVEECLDYYRDIGERRLTLSYEIDGVVFK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++ R +A Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406 Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 + P CP+C S V R +T A +RC G LAC AQ + + H+VSR Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG + ++ + I PAD++ L+ Q + GF ++S L Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I R +L RFI +LGI VG E A+ LA+ S Q + + L Sbjct: 517 KAIADSRQPTLARFIHALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650 +P VG +A I F+++ N ++ALL E + + S+ +E Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622 Score = 171 bits (433), Expect = 4e-40, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 104/257 (40%), Gaps = 20/257 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R +++ + + + D + F + + G Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLQL 603 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + +LE I L I VG A+ LA + + + D Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISA----------D 653 Query: 595 WLSLIR-VPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649 WL + + +P + A+++ +F+ + + A+EA LK+ +K V + Sbjct: 654 WLDMRQTLP---EKQAKSVRDFFDDSAHAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 710 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 + V TG+L+++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ ++ Sbjct: 711 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770 Query: 710 NEEQFLFLLQQYNTTLR 726 +E+ L L + + Sbjct: 771 DEDALLKRLTELGVAVD 787 >gi|330986172|gb|EGH84275.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. lachrymans str. M301315] Length = 787 Score = 431 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 219/656 (33%), Positives = 338/656 (51%), Gaps = 53/656 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + L E+ H+ Y+ +P I D EYD L A+ P L P+ Sbjct: 1 MKAVETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127 P ++G + +V H +P LSL + D+ +F R+ + + Sbjct: 58 PTQRVGSAALSAFTQVRHEMPMLSLGNAFEESDMLEFDRRVTEGLDLPAGDLFGAGSKVQ 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP L P+++E Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV++SK F LN + +G K +ANPRNAA+G LR+L+ R L F +GLG+ Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 TS A +L+ ++ G PV++ ++ AN + YY ++ R TL Y+IDG+V+K Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSHELKLANGVEDCLDYYRDIGERRLTLSYEIDGVVFK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++ R +A Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406 Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 + P CP+C S V R +T A +RC G LAC AQ + + H+VSR Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG + ++ + I PAD++ L+ Q + GF ++S L Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I R +L RFI++LGI VG E A+ LA+ S Q + + L Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650 +P VG +A I F+++ N ++ALL E + + S+ +E Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622 Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 105/257 (40%), Gaps = 20/257 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R +++ + + + D + F + + G Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLQL 603 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + +LE I L I VG A+ LA + + + D Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISA----------D 653 Query: 595 WLSLIR-VPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649 WL + + +P + A+++ +F+ + + A+EA LK+ +K V + Sbjct: 654 WLDMRQTLP---EKQAKSVRDFFDDSAHAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 710 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 + V TG+L+++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ ++ Sbjct: 711 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770 Query: 710 NEEQFLFLLQQYNTTLR 726 +E+ L L + T+ Sbjct: 771 DEDALLKRLTELGVTVD 787 >gi|330897709|gb|EGH29128.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. japonica str. M301072PT] Length = 657 Score = 431 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 217/656 (33%), Positives = 339/656 (51%), Gaps = 53/656 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + L ++ H+ Y+ +P I D EYD L A+ P L P+ Sbjct: 1 MKAVETRILELRAQLDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127 P ++G + +V H +P LSL + D+ +F R+ + + + Sbjct: 58 PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGSKVQ 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP L P+++E Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV++SK F LN + +G K +ANPRNAA+G LR+L+ R L F +GLG+ Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 TS A +L+ ++ G PV+ ++ AN ++YY ++ R L Y+IDG+V+K Sbjct: 238 TSAEIADTHIGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEIDGVVFK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++ R +A Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406 Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 + P CP+C S V R +T A +RC G LAC AQ + + H+VSR Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG + ++ + I PAD++ L+ Q + GF ++S L Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I R +L RFI++LGI VG E A+ LA+ S + Q + + L Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEV----------LT 566 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650 +P VG +A I F+++ N ++ALL E + + S+ +E Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRSVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622 >gi|229137131|ref|ZP_04265750.1| DNA ligase [Bacillus cereus BDRD-ST26] gi|228646303|gb|EEL02518.1| DNA ligase [Bacillus cereus BDRD-ST26] Length = 589 Score = 431 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 225/632 (35%), Positives = 353/632 (55%), Gaps = 49/632 (7%) Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL +N DLR F R+ Q DD ++ + E KIDG +++ YEKG+F+ A R Sbjct: 1 MLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICELKIDGLAVSLHYEKGRFIQGATR 57 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG +GED++ ++ I IP L+ + +E RGE Y+ K F+ LN+E G +A Sbjct: 58 GDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEAYMPKRSFVKLNEEKEQNGEDVFA 115 Query: 215 NPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273 NPRNAA+G +R+L+P R L+ FV+GL E E L + LGF N R Sbjct: 116 NPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKTILSHSESLDFLGELGFKTNPNRR 175 Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333 T +++Y E + R L Y+IDG+V KVD+ +LQ+ LG A+SPRW I++KF + Sbjct: 176 TCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVALQESLGTTAKSPRWAIAYKFPAE 235 Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393 + TRL I++ +GRTG++TP A LEPV + G ++ A+LHNED I+ + Sbjct: 236 EVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRRASLHNEDLIR-----------EK 284 Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453 DIR+GD V+VK+AG++IP+VV+++ ++R + + + P+ CP C+S +VR Sbjct: 285 DIRIGDYVVVKKAGDIIPEVVNVLFDKRTGEEEEYHMPTHCPACESELVRLEEE------ 338 Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513 A RC C AQ E L HFVSR+A NI+GLG++ + F+ A IR AD+++L Sbjct: 339 VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERVITQLFE----ADYIRTFADLYSL 393 Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 + Q + FG+ S TNL +I + SLER +F LGIRHVGA+ AR+ A++ Sbjct: 394 TKEQL------LQLERFGEKSATNLVQAIENSKENSLERLLFGLGIRHVGAKAARTFAEH 447 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + + + L + +G+ +AQ++V ++ N + ++ + Sbjct: 448 FETMDALVKATE----------EELKAINEIGEKMAQSVVAYFDNEDVLELLQQFKEYGV 497 Query: 634 PSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 + +NV S K +V TG L+ + R +A++ + LG V+ +S+ TD++ Sbjct: 498 NMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGRSEAKKKIEALGGKVTGSVSKSTDLV 557 Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G+ GSKL +A++ V++ NEE+FL L + Sbjct: 558 VAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 589 >gi|330981936|gb|EGH80039.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 787 Score = 431 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 218/656 (33%), Positives = 339/656 (51%), Gaps = 53/656 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + L E+ H+ Y+ +P I D EYD L A+ P L P+ Sbjct: 1 MKAVETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127 P ++G + +V H +P LSL + D+ +F R+ + + + Sbjct: 58 PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGSKVQ 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP L P+++E Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV++SK F LN + +G K +ANPRNAA+G LR+L+ R L F +GLG+ Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 TS A +L+ ++ G PV+ ++ AN ++YY ++ R L Y+IDG+V+K Sbjct: 238 TSAEIADTHIGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEIDGVVFK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++ R +A Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406 Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 + P CP+C S V R +T A +RC G LAC AQ + + H+VSR Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG + ++ + I PAD++ L+ Q + GF ++S L Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I R +L RFI++LGI VG E A+ LA+ S + Q + + L Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEV----------LT 566 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650 +P VG +A I F+++ N ++ALL E + + S+ +E Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRSVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622 Score = 174 bits (442), Expect = 3e-41, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 104/257 (40%), Gaps = 20/257 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R ++E + + + D + F + + + G Sbjct: 546 VLARSLASLERVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRSVIDALLGECGLQL 603 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + +LE I L I VG A+ LA + + + D Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISA----------D 653 Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649 WL + +P + A+++ +F+ + N A+EA LK+ +K V + Sbjct: 654 WLDMRQALP---EKQAKSVRDFFDDSANAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 710 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 + V TG+L+++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ ++ Sbjct: 711 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770 Query: 710 NEEQFLFLLQQYNTTLR 726 +E+ L L + + Sbjct: 771 DEDALLKRLAELGVAVD 787 >gi|330939980|gb|EGH43181.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. pisi str. 1704B] Length = 731 Score = 431 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 218/656 (33%), Positives = 339/656 (51%), Gaps = 53/656 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + L E+ H+ Y+ +P I D EYD L A+ P L P+ Sbjct: 1 MKAVETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127 P ++G + +V H +P LSL + D+ +F R+ + + + Sbjct: 58 PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGSKVQ 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP L P+++E Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV++SK F LN + +G K +ANPRNAA+G LR+L+ R L F +GLG+ Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 TS A +L+ ++ G PV+ ++ AN ++YY ++ R L Y+IDG+V+K Sbjct: 238 TSAEIADTHIGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEIDGVVFK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++ R +A Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406 Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 + P CP+C S V R +T A +RC G LAC AQ + + H+VSR Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG + ++ + I PAD++ L+ Q + GF ++S L Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I R +L RFI++LGI VG E A+ LA+ S + Q + + L Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEV----------LT 566 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650 +P VG +A I F+++ N ++ALL E + + S+ +E Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRSVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622 Score = 81.8 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 71/199 (35%), Gaps = 20/199 (10%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R ++E + + + D + F + + + G Sbjct: 546 VLARSLASLERVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRSVIDALLGECGLQL 603 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + +LE I L I VG A+ LA + + + D Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISA----------D 653 Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649 WL + +P + A+++ F+ + N A+EA LK+ +K V + Sbjct: 654 WLDMRQALP---EKQAKSVRGFFDDSANAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 710 Query: 650 KKLVFTGTLQKIQRHKAQE 668 + V TG+L+++ R A+E Sbjct: 711 QTWVLTGSLERMSRDVAKE 729 >gi|15604865|ref|NP_219649.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis D/UW-3/CX] gi|7673995|sp|O84148|DNLJ_CHLTR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|3328547|gb|AAC67737.1| DNA Ligase [Chlamydia trachomatis D/UW-3/CX] gi|289525187|emb|CBJ14662.1| NAD-dependent DNA ligase [Chlamydia trachomatis Sweden2] gi|297748276|gb|ADI50822.1| NAD-dependent DNA ligase [Chlamydia trachomatis D-EC] gi|297749156|gb|ADI51834.1| NAD-dependent DNA ligase [Chlamydia trachomatis D-LC] Length = 663 Score = 431 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 217/713 (30%), Positives = 349/713 (48%), Gaps = 71/713 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R + +L E+ HD YY ++P I D YD R I P+ S P Sbjct: 6 RDDYIALCTELVEHDRRYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSW---SPTMY 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + V HS P LS+ ++++++L +F +R + S ++LE KIDG Sbjct: 63 LGDRPSGQFPVVPHSSPMLSIANVYSLQELEEFFSRTEKLLG----YSPGYSLELKIDGI 118 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + IRYEK F A RG+G GED++A + I ++P L PE +EVRGEV++S Sbjct: 119 AVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSYEA 178 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F LN G+ +ANPRNAA G L+ L+ + + G ++ + +E Sbjct: 179 FEELNACQREQGKLEFANPRNAAGGTLKLLSSKEA-AKRKLDLSVYGLITDQKKRSHFEN 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 LQ GF V +Q + +V E++ +R+ LP IDG+V KVD + Q +LG Sbjct: 238 LQLCSQWGFFVAGMPKQCRSRQDVVERIREIEEMRAALPMAIDGVVIKVDNIAYQDRLGL 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++ RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+N+D Sbjct: 298 TSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLYNQD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ +DIR+GD V V++ GEVIPK+V I + +R +++P+ PS CP+C Sbjct: 358 EIEK-----------KDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLCPVC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 VV++ + RC L + F S+ A NI+ LG++ + F+ Sbjct: 407 HEPVVKEK--------VSVRCVNPLCSGGMLEKIC-FFASKSALNIDHLGEKVVTKLFE- 456 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I +DIF L + GF D S+ NL SI + ++L+R + +L Sbjct: 457 ---VGLISSCSDIFALAEEDLK------QVPGFKDRSIQNLLASIAGAKKVALDRLLTAL 507 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I VG+ A +LA ++ + + L+ + +G +A +IV F+ Sbjct: 508 SIPFVGSSGAIALADHFGTLDKVIEA----------SLDELMSIEGIGPKVAASIVAFFS 557 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT------ 671 N + ++E+ + + + + ++ K V TGTLQ++ R +A+E + Sbjct: 558 KHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRCLGGKV 616 Query: 672 -----QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + T +I G G KL+KAQ LG+ I NE + L +L Sbjct: 617 SSSVSKS-----------TYAVIAGSEAGGKLKKAQDLGLSIWNESELLRILD 658 >gi|13508096|ref|NP_110045.1| DNA ligase [Mycoplasma pneumoniae M129] gi|2494169|sp|P78021|DNLJ_MYCPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|1674170|gb|AAB96127.1| DNA ligase [Mycoplasma pneumoniae M129] Length = 658 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 198/702 (28%), Positives = 341/702 (48%), Gaps = 61/702 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++ ++ +++ +D YY P++ D EYD L ++ A+ A P+L + P+ P ++ Sbjct: 5 AQIRAIVEQLKRYDYHYYVLDDPLVSDFEYDQLYKQLQALEQAHPELIQ---PDSPTQRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + + K H P LSL+ ++ + FI I ++ F +EPKIDG Sbjct: 62 GGIVVEAFNKFPHQNPMLSLDNAFDTATIASFIANINNLTGVQN----RFVVEPKIDGVS 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YE G A RGDG GEDV + ++ I +IP L++ + +E+RGE+++ K F Sbjct: 118 ISLTYENGLLTRALTRGDGLVGEDVLSNVKTIKSIP--LTIPFHKQVEIRGEIFVDKKTF 175 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEM 257 +N+ + KP+AN RN A+G LR LN R L F + + + + Q + Sbjct: 176 AQINENL----AKPFANARNLAAGTLRNLNSEVSAKRKLKAFFYFVPNALTLGCRSQSAV 231 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L +++ FPV+ V + ++ Y + R L + +DGLV K+D F QLG Sbjct: 232 LAQLKQWNFPVSKAVASFDRPEALIEYLEQFDQTRDQLNFQVDGLVVKLDNFHFYDQLGF 291 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++ PRW +++KF K T+L + + +GRTG + A+L+PVN+ G +++ ATLHN D Sbjct: 292 TSKFPRWALAYKFKPKFVQTKLRGVLVTVGRTGKINYTAQLDPVNLEGTVVSAATLHNFD 351 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YIK +DIR+ D V++ +AGE+IPKV+++ + R QP + CP C Sbjct: 352 YIK-----------EKDIRLNDTVIIYKAGEIIPKVLEVCLPLRTAANQPIPEQTHCPAC 400 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 Q+ +V+ + CT C + LE + +FVS+ A +I+GL Q + +++ Sbjct: 401 QAPLVQYKDE------VDQYCTNER-CDQRNLEAINYFVSKTAMDIQGLSIQTISKLYEN 453 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 +R D++ L+ + I G+V L SI + + + R + L Sbjct: 454 N----LVRSVVDLYHLKEHKAAVLALELKI---GEVLFNKLISSIEQSKTKGMARLLTGL 506 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI+HVG +A+SL K++ + +L+ +P VG +A+++ ++ Sbjct: 507 GIKHVGQVLAKSLTKHFENIDALQSA----------SMETLLELPDVGPTVAESLFNWFH 556 Query: 618 NPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 N N+ + AL +S K V TG+ I R + + Sbjct: 557 NDNNLQLLAALKAVGVQMDALKSNTNFDTASIYFQKSFVITGSFP-ISRDTIKNLLVN-- 613 Query: 675 AV----VSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNE 711 + ++ K D ++ G KLE+A+ L + I+NE Sbjct: 614 -KYDCRFTNNVTSKVDFVLAGIKATPRKLEQAKALNIPIINE 654 >gi|330889906|gb|EGH22567.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. mori str. 301020] Length = 787 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 221/656 (33%), Positives = 339/656 (51%), Gaps = 53/656 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + L E+ H+ Y+ +P I D EYD L A+ P L P+ Sbjct: 1 MKAVETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127 P ++G + +V H +P LSL + D+ +F R+ + + Sbjct: 58 PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQ 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP L P+++E Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV++SK F LN + +G K +ANPRNAA+G LR+L+ R L F +GLG+ Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 TS A +L+ ++ G PV+ ++ AN + YY ++ R TL Y+IDG+V+K Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSRELKLANGVEECLDYYRDIGERRLTLSYEIDGVVFK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++V R A Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVVERRPESA 406 Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +P P CP+C S V R +T A +RC G LAC AQ + + H+VSR Sbjct: 407 RPVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG + ++ + I PAD++ L+ Q + GF ++S L+ Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLF 516 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I R +L RFI++LGI VG E A+ LA+ S Q + + L Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650 +P VG +A I F+++ N ++ALL E + + S+ +E Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLKLQDQGELGAEFAASTTLEGL 622 Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 105/257 (40%), Gaps = 20/257 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R +++ + + + D + F + + G Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLKL 603 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + +LE I L I VG A+ LA + + + D Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISA----------D 653 Query: 595 WLSLIR-VPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649 WL + + +P + A+++ +F+ + + A+EA LK+ +K V + Sbjct: 654 WLDMRQTLP---EKQAKSVRDFFDDSAHAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 710 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 + V TG+L+++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ ++ Sbjct: 711 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770 Query: 710 NEEQFLFLLQQYNTTLR 726 +E+ L L + T+ Sbjct: 771 DEDALLKRLTELGVTVD 787 >gi|154503603|ref|ZP_02040663.1| hypothetical protein RUMGNA_01427 [Ruminococcus gnavus ATCC 29149] gi|260589901|ref|ZP_05855814.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583] gi|153795703|gb|EDN78123.1| hypothetical protein RUMGNA_01427 [Ruminococcus gnavus ATCC 29149] gi|260539708|gb|EEX20277.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583] gi|291547890|emb|CBL20998.1| DNA ligase, NAD-dependent [Ruminococcus sp. SR1/5] Length = 671 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 186/711 (26%), Positives = 300/711 (42%), Gaps = 60/711 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L ++ + YY + P I D+EYD + + + N P + Sbjct: 11 EKIKQLVDYLNLQRNAYYNENSPNISDAEYDRIFDELVELEKQTGFILS----NSPTQTV 66 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G L KV H +P LSL+K ++DL F + + F K+DG Sbjct: 67 GYTPISELPKVKHPVPLLSLDKTKQVQDLISFAGK----------QPVLFM--LKLDGLT 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + YE G V A+ RGDG GE ++ I A +P LS+ + + GE +I +DF Sbjct: 115 TKLVYENGTLVEASTRGDGEIGELITHNIPAYVDVP--LSIPYKGRLVIVGESFIPTHDF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257 L + + +PY N RN ASG +R L+P R L+F + + + Sbjct: 173 ERLKETLRDGKGEPYKNGRNLASGSVRSLDPANCAGRCLHFMPFNVLEGLDSPFLFPDSR 232 Query: 258 LQKMRC----LGFPVNNGVRQANTFHGIVSYYNEMKSI-RSTLPYDIDGLVYKVDEFSLQ 312 K+ P +V+ Y E + IDG+V D Sbjct: 233 AMKISSLFDYGFQPCPYIAANHPLTSELVNQYIERLTDLAGKKHLPIDGIVMIFDSLDYS 292 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 K G + ++ KF ++ T L +I+ R G + PV +PV I G ++ AT Sbjct: 293 KNCGRTGHHYKDGLAFKFEDETYETTLRNIEWTPTRFGEIAPVGVFDPVEIDGCSVSRAT 352 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN +IK L+ + G R+ V + +IP + + + + DA P Sbjct: 353 LHNLTFIKELE-----------LVPGCRISVSKRNMIIPHIEENLERGHYVDA----VPP 397 Query: 433 FCPICQSRVV-RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C S+ G+L+ C C +Q +R HFV + A NIEGL + L Sbjct: 398 VCPCCGSQTRIYQRKGNDGRLIETVHCDNP-NCDSQIRKRFTHFVGKKAMNIEGLSETTL 456 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F ++ DI+ L Q+ +I + GFG S L++SI RN + Sbjct: 457 EKFL----TLGYLQTFPDIYHLNEHQE----EILQLEGFGKKSFERLWNSITSSRNTTFV 508 Query: 552 RFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+ S+ I VG +R L + S Q F + ++ GD + Q Sbjct: 509 RFLVSMDIPMVGRTKSRILDTVFHGSLQEFFDAASGDY--------DFTQLDDFGDTLNQ 560 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHKAQE 668 I +++ + N+ L KE+ + + +V TG L R + Sbjct: 561 NIHDWFSDENNLILWHELQKELIFEERKEMNTMMKENVFTGCTIVATGKLAHFTRDEINS 620 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + +LGA + +++KTD +I G+ GSKL KAQ LG+KI++E++FL ++ Sbjct: 621 KILELGAKAGSSVTKKTDYLICGEKAGSKLAKAQSLGIKILSEDEFLEMIA 671 >gi|237802575|ref|YP_002887769.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis B/Jali20/OT] gi|231273809|emb|CAX10593.1| NAD-dependent DNA ligase [Chlamydia trachomatis B/Jali20/OT] Length = 663 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 218/713 (30%), Positives = 350/713 (49%), Gaps = 71/713 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R + +L E+ HD YY ++P I D YD R I P+ S P Sbjct: 6 RDDYIALCTELVEHDRRYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSW---SPTMY 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + V HS P LS+ ++++++L +F +R + S ++LE KIDG Sbjct: 63 LGDRPSGQFPVVPHSSPMLSIANVYSLQELEEFFSRTEKLLG----YSPGYSLELKIDGI 118 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + IRYEK F A RG+G GED++A + I ++P L PE +EVRGEV++S Sbjct: 119 AVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSYEA 178 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F LN G+ +ANPRNAA G L+ L+ + + G ++ + +E Sbjct: 179 FEELNACQREQGKLEFANPRNAAGGTLKLLSSKEA-AKRKLDLSVYGLITDQKKRSHFEN 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 LQ GF V +Q + +V E++ +R+ LP IDG+V KVD + Q +LG Sbjct: 238 LQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRAALPMAIDGVVIKVDNIAHQDRLGL 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++ RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+N+D Sbjct: 298 TSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLYNQD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ +DIR+GD V V++ GEVIPK+V I + +R +++P+ PS CP+C Sbjct: 358 EIEK-----------KDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLCPVC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 VV++ + RC L + F S+ A NI+ LG++ + F+ Sbjct: 407 HEPVVKEK--------VSVRCINPLCSGGMLEKIC-FFASKSALNIDHLGEKVVTKLFE- 456 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I +DIF L + + GF D S+ NL SI + ++L+R + +L Sbjct: 457 ---VGLISSCSDIFALTEKDLK------QVPGFKDRSIQNLLASIAGAKKVTLDRLLTAL 507 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I VG+ A +LA ++ + + L+ + +G +A +IV F+ Sbjct: 508 SIPFVGSSGAIALADHFGTLDKVIEA----------SLDELMSIEGIGPKVAASIVAFFS 557 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL---- 673 N + ++E+ + + + + ++ K V TGTLQ++ R +A+E + L Sbjct: 558 KHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRSLGGKV 616 Query: 674 -------GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 T +I G G KL+KAQ LG+ I NE + L +L Sbjct: 617 SSSVSKS-----------TYAVIAGSEAGGKLKKAQDLGLSIWNESELLIILD 658 >gi|301633469|gb|ADK87023.1| DNA ligase (NAD(+)) [Mycoplasma pneumoniae FH] Length = 658 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 198/702 (28%), Positives = 342/702 (48%), Gaps = 61/702 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++ ++ +++ +D YY P++ D EYD L ++ A+ A P+L + P+ P ++ Sbjct: 5 AQIRAIVEQLKRYDYHYYVLDDPLVSDFEYDQLYKQLQALEQAHPELIQ---PDSPTQRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + + K H P LSL+ ++ + FI I ++ F +EPKIDG Sbjct: 62 GGIVVEAFNKFPHQNPMLSLDNAFDTATIASFIANINNLTGVQN----RFVVEPKIDGVS 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YE G A RGDG GEDV + ++ I +IP L++ + +E+RGE+++ K F Sbjct: 118 ISLTYENGLLTRALTRGDGLVGEDVLSNVKTIKSIP--LTIPFHKQVEIRGEIFVDKKTF 175 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEM 257 +N+ + KP+AN RN A+G LR LN R L F + + + + Q + Sbjct: 176 AQINENL----AKPFANARNLAAGTLRNLNSEVSAKRKLKAFFYFVPNALTLGCRSQSAV 231 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L +++ FPV+ V + ++ Y ++ R L + +DGLV K+D F QLG Sbjct: 232 LAQLKQWNFPVSKAVASFDRPEALIEYLDQFDQTRDQLNFQVDGLVVKLDNFHFYDQLGF 291 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++ PRW +++KF K T+L + + +GRTG + A+L+PVN+ G +++ ATLHN D Sbjct: 292 TSKFPRWALAYKFKPKFVQTKLRGVLVTVGRTGKINYTAQLDPVNLEGTVVSAATLHNFD 351 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YIK +DIR+ D V++ +AGE+IPKV+++ + R QP + CP C Sbjct: 352 YIK-----------EKDIRLNDTVIIYKAGEIIPKVLEVCLPLRTAANQPIPEQTHCPAC 400 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 Q+ +V+ + CT C + LE + +FVS+ A +I+GL Q + +++ Sbjct: 401 QAPLVQYKDE------VDQYCTNER-CDQRNLEAINYFVSKTAMDIQGLSIQTISKLYEN 453 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 +R D++ L+ + I G+V L SI + + + R + L Sbjct: 454 N----LVRSVVDLYHLKEHKAAVLALELKI---GEVLFNKLISSIEQSKTKGMARLLTGL 506 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI+HVG +A+SL K++ + +L+ +P VG +A+++ ++ Sbjct: 507 GIKHVGQVLAKSLTKHFENIDALQSA----------SMETLLELPDVGPTVAESLFNWFH 556 Query: 618 NPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 N N+ + AL +S K V TG+ I R + + Sbjct: 557 NDNNLQLLAALKAVGVQMDALKSNTNFDTASIYFQKSFVITGSFP-ISRDTIKNLLAN-- 613 Query: 675 AV----VSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNE 711 + ++ K D ++ G KLE+A+ L + I+NE Sbjct: 614 -KYDCRFTNNVTSKVDFVLAGIKATPRKLEQAKALNIPIINE 654 >gi|227498227|ref|ZP_03928396.1| DNA ligase (NAD(+)) [Actinomyces urogenitalis DSM 15434] gi|226832370|gb|EEH64753.1| DNA ligase (NAD(+)) [Actinomyces urogenitalis DSM 15434] Length = 827 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 207/822 (25%), Positives = 339/822 (41%), Gaps = 125/822 (15%) Query: 14 IEQARKELSSLEQEISYHDDCYYQ--YSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++AR+ L + + YY ++ D+ YDAL R + + A+P L P Sbjct: 27 PQEARRRWEELAELVERARAAYYDALDAESTTSDAAYDALYRELEDLEAAWPQL---RVP 83 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +GG + VTH+ SL+ ++++E+++++ R+ D S+ T E Sbjct: 84 HSPTRSVGGGRAQAFSPVTHAERMYSLQDVFSLEEVQEWAERVCADLG-VADASLPMTAE 142 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190 KIDG + + Y G AA RGDG +GEDV+A +R I ++P LS + P +IEVRGE Sbjct: 143 VKIDGLAVALTYTDGVLTRAATRGDGTTGEDVTANVRTIASVPHRLSGDQVPSLIEVRGE 202 Query: 191 VYISKNDFLALNDEMIAVGRKP------------------------YANPRNAASGILRR 226 VY F N E + +ANPRNAA+G LR+ Sbjct: 203 VYFPVEAFARFNRERQEDNARREARNRALEEQGGGKRVRKEAMLQVFANPRNAAAGSLRQ 262 Query: 227 LNPT-DITRYLNFFVHGLG----KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI 281 +P +R L F HG+G E Q+E + + G PV+ Sbjct: 263 KDPAITASRPLAFIAHGIGAYTPAPGEQLPALQHEWYELLAGWGLPVSPYNALVVGRAER 322 Query: 282 VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341 +Y R L ++IDG+V+K+D Q +LG +R PRW ++K+ ++ TRLLD Sbjct: 323 EAYIERYAEHRHDLIHEIDGIVFKIDARDQQGRLGYTSRVPRWATAYKYPPEEVHTRLLD 382 Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401 ID+Q+GRTG +TP +EPV + G+ + ATLHN + + + +R+GD V Sbjct: 383 IDVQVGRTGRVTPFGIMEPVLVAGSTVARATLHNAEEVTR-----------KGVRIGDLV 431 Query: 402 LVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461 ++++AG+VIP++V +V R + F P+ CP C + + + RC Sbjct: 432 VLRKAGDVIPEIVGPVVEARDGSERVFVMPAACPSCGTPLA-----PAKEGDVDLRCPNT 486 Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS-----------------EDPAFSI 504 +C AQ ER+ H SR A ++EGLG + + E I Sbjct: 487 RSCPAQVTERVAHVGSRGALDVEGLGDEAAAALTQPDAGQEEALAALAAGRYLETERGRI 546 Query: 505 R-IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS---INKRRNISLERFIFSLGIR 560 R D+ +L Q+ + L + E F++ R Sbjct: 547 RLRTKDLESLAPAQRLGLARTYLEEHGIGEQEPVLTGEAGLFELSEDDLAEVFVYQSVRR 606 Query: 561 HVGAEIARSLAKYYLSYQNF-------------AQEINNIIAHNNDDWLSL------IRV 601 A LA+++ + Q + + L + V Sbjct: 607 RGEATGDWRLARFFWTKQTYTPDGDVKKASVPGKNATAVLAQLEAAKAQPLWRVLVALSV 666 Query: 602 PLVGDIIAQAIV--------------------------------EFYQNPRNICAVEALL 629 VG A+A+ E+ + + ++ Sbjct: 667 RHVGPTAARALAARFGSLEALRQASLDELSQVDGVGPTIAAAWQEWLEVDWHREILDRWA 726 Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 + + +V TGTL+ R A+E + G + +S++T ++ Sbjct: 727 AAGVRTQDEVTTTAPQTLAGLSVVVTGTLEHFTREGAKEAIVARGGKAAGSVSKRTSYVV 786 Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731 VG N GSK KA++LGV +++EE F LL ++ +D Sbjct: 787 VGANAGSKETKARELGVPVLDEEGFRALL-EHGPAADPEQED 827 >gi|226945096|ref|YP_002800169.1| NAD-dependent DNA ligase LigA [Azotobacter vinelandii DJ] gi|254781546|sp|C1DN27|DNLJ_AZOVD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|226720023|gb|ACO79194.1| DNA ligase, NAD-dependent [Azotobacter vinelandii DJ] Length = 784 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 226/684 (33%), Positives = 350/684 (51%), Gaps = 65/684 (9%) Query: 12 LSIEQ-ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ++ Q A + ++ L EI H+ YY P + D+EYD L A+ P+L Sbjct: 1 MTDAQTAAERIARLRSEIDEHNYRYYVLDAPSVPDAEYDRLFNELKALEAEHPELV---T 57 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P P ++GGE + +V H +P LSL + EDL F + + + + ++ Sbjct: 58 PESPTQRVGGEALAAFGQVRHELPMLSLGNAFAEEDLLDFDRNVCKGLDR-GIEVVEYSC 116 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189 EPK+DG +++ YE G+ V A RGDG +GED++A +R + IP L P ++EVRG Sbjct: 117 EPKLDGLAVSLLYEDGQLVRGATRGDGSTGEDITANVRTVRNIPLRLHGQGWPAVLEVRG 176 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTS 247 E+Y+ + F ALN I G K +ANPRNAA+G LR+L+P R L F +G+G Sbjct: 177 EIYMPRAGFEALNARAIENGGKTFANPRNAAAGSLRQLDPKITAGRPLEFCGYGIGRFEG 236 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + +L+ +R G P++ ++ A + ++YY + R L YDIDG+V+KV+ Sbjct: 237 AEVPQTHTSLLETLRRWGLPISRELQLARSVQDCLAYYRAIGERRQGLAYDIDGVVFKVN 296 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 Q++LG RAR+P W I++KF ++ T LL ++ Q+GRTG +TPVARL+PV + G Sbjct: 297 RLDWQRELGFRARTPHWAIAYKFPAQEELTELLGVEFQVGRTGAITPVARLKPVQVAGVT 356 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NA+LHN D + L + +GD V+V+RAG+VIP+++ ++ R DA+P Sbjct: 357 VSNASLHNMDEVARL-----------GVMIGDTVIVRRAGDVIPQIMQVVGERRPADARP 405 Query: 428 FSFPSFCPICQSRVVRDLNPKTGK------LVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 P CP+C S V R K GK A +RC G LAC AQ + + HFVSR A Sbjct: 406 VEVPRQCPVCGSAVERTQLVKRGKGRASLSEGAIYRCVGRLACQAQLKQAIVHFVSRRAM 465 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +I+GLG++ ++ + ++ PAD++ L Q + GF +VS NL + Sbjct: 466 DIDGLGERIVEQLVDT----GLVKSPADLYILTFEQLV------VLDGFAEVSSNNLLAA 515 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I R SL RFI++LGI VG E A+ LA+ S + + + LI + Sbjct: 516 IAASRRPSLARFIYALGIPDVGEETAKRLARALGSLTRIEKALPEV----------LIWL 565 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-------SEIENK---- 650 P VG +A I F+++ N+ + LL E + E+ +K Sbjct: 566 PDVGLEVAHEIHSFFRDEHNLTVIGQLLARGVELQEEGELHAEFAACASLGELLDKLDIP 625 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLG 674 + TG A++ G Sbjct: 626 GIAATG---------AKKLAEAAG 640 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 12/212 (5%) Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575 R + + T I +L G SL + L I + A A+ LA+ Sbjct: 581 RDEHNLTVIGQLLARGVELQEEGELHAEFAACASLGELLDKLDIPGIAATGAKKLAEAAG 640 Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEV 632 S + DWL+L + + QA+ EF+ P N+ A+E L+E Sbjct: 641 SLEAVIGLSQ--------DWLTLNTTKGLSEKARQALREFFAVPANVEHARAIEGQLREF 692 Query: 633 SPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 + + + V TGTL+ + R + + + LGA V+ +S KT ++ G Sbjct: 693 GMHWESERRCAEGLPLAGQTWVLTGTLESMSREQGKARLESLGAKVAGSVSAKTACVVAG 752 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 GSKL KA +LGVK+++EE FL LL+Q + Sbjct: 753 PGAGSKLAKAGELGVKVLDEEAFLALLRQLES 784 >gi|255283571|ref|ZP_05348126.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469] gi|255265833|gb|EET59038.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469] Length = 667 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 189/717 (26%), Positives = 313/717 (43%), Gaps = 61/717 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +EQ + L Q ++ H + YY + P I D EYD L A+ Sbjct: 1 MEQKITRMKQLIQNLNKHRNAYYNLNAPTITDQEYDRLYDELAALEKE----TGVILSYS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +G SL KVTH LSL+K + ++ +TR K Sbjct: 57 PTQTVGYYPVSSLAKVTHPHRLLSLDKTKQVSEICALLTRNPALL------------MLK 104 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG + YE GK + A+ RGDG +GED++ I A +P L++ + + + GE YI Sbjct: 105 LDGLTTKLVYENGKLLQASTRGDGETGEDITHNIPAYRNVP--LTIPYTKRLVITGESYI 162 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252 +DFL L D + KPY N RN A+G +R LNP R + F + + E Sbjct: 163 HADDFLRLKDTLFDSSGKPYRNARNLAAGSVRSLNPEKCAPRCVYFSPFHVLEGLEEIPH 222 Query: 253 GQYEMLQK-----MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 L+ P + + +++ + IDG+V D Sbjct: 223 SDSRKLRLSSLKPFGFDICPYIALTDPVPSQEQVQEAIEQLRKEATEKQIPIDGIVAIFD 282 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 S K G + +++KF ++Q T L DI+ R+G + PV + V I G Sbjct: 283 SLSYSKSCGSTGHHYKDGLAYKFEDEQYETVLRDIEWTPTRSGEIAPVGVFDTVEIDGCK 342 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ A+LHN +IKGL+ + G R+LV + +IP + + + R+ D Sbjct: 343 VSRASLHNLTFIKGLE-----------LVPGCRILVSKRNMIIPHIEENLDRGRYHD--- 388 Query: 428 FSFPSFCPICQSRVV-RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP C S+ G+++ C G +C Q L + +HF + A NIEGL Sbjct: 389 -IVPPLCPCCSSKTWICRKKASDGRIIETVHC-GNPSCDTQILRKYEHFTGKKAMNIEGL 446 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 L+ F I D++ L R ++ +I + GFG+ S L+DSI K R Sbjct: 447 SSATLERFLD----LGYIMSFQDLYHLDRYRE----QILQLEGFGEKSFDRLWDSIQKSR 498 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + R++ ++ I +G +R L + + S +F A + D+ +L G Sbjct: 499 HTDFVRYLVAMDIPMIGRTKSRILNEIFQGSLDDFEAA-----AAGDYDFSTL---EDFG 550 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH---EKNVSSEIENKKLVFTGTLQKIQ 662 +I+ I ++ + N+ + L KE + ++ + + +V TG L+ Sbjct: 551 EILNHNIHSWFSDEENLHLWKELQKEFTFESKEENTMKETRENPFRGRTVVATGKLEHFT 610 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R + +LG + +++KTD +I G+ GSKL KAQ+LG+ ++ E++FL ++ Sbjct: 611 RDGINTKILELGGKPGSSVTKKTDYLICGEKAGSKLSKAQELGIPVLTEQEFLDMIA 667 >gi|76788861|ref|YP_327947.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis A/HAR-13] gi|123731251|sp|Q3KMM3|DNLJ_CHLTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|76167391|gb|AAX50399.1| NAD-dependent DNA ligase [Chlamydia trachomatis A/HAR-13] Length = 663 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 219/713 (30%), Positives = 351/713 (49%), Gaps = 71/713 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R + +L E+ HD CYY ++P I D YD R I P+ S P Sbjct: 6 RDDYIALCTELVEHDRCYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSW---SPTMY 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + V HS P LS+ ++++++L +F +R + S ++LE KIDG Sbjct: 63 LGDRPSGQFPVVPHSSPMLSIANVYSLQELEEFFSRTEKLLG----YSPGYSLELKIDGI 118 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + IRYEK F A RG+G GED++A + I ++P L PE +EVRGEV++S Sbjct: 119 AVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSYEA 178 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F LN G+ +ANPRNAA G L+ L+ + + G ++ + +E Sbjct: 179 FEELNACQREQGKLEFANPRNAAGGTLKLLSSKEA-AKRKLDLSVYGLITDQKKRSHFEN 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 LQ GF V +Q + +V E++ +R+ LP IDG+V KVD + Q +LG Sbjct: 238 LQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRAALPMAIDGVVIKVDNIAHQDRLGL 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++ RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+N+D Sbjct: 298 TSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLYNQD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ +DIR+GD V V++ GEVIPK+V I + +R +++P+ PS CP+C Sbjct: 358 EIEK-----------KDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLCPVC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 VV++ + RC L + F S+ A NI+ LG++ + F+ Sbjct: 407 HEPVVKEK--------VSVRCINPLCSGGMLEKIC-FFASKSALNIDHLGEKVVTKLFE- 456 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I +DIF L + GF D S+ NL SI + ++L+R + +L Sbjct: 457 ---VGLISSCSDIFALTEEDLK------QVPGFKDRSIQNLLASIAGAKKVALDRLLTAL 507 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I VG+ A +LA ++++ + L+ + +G +A +IV F+ Sbjct: 508 SIPFVGSSGAIALADHFVTLDKVIEA----------SLDELMSIEGIGPKVAASIVAFFS 557 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL---- 673 N + ++E+ + + + + ++ K V TGTLQ++ R +A+E + L Sbjct: 558 KHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRSLGGKV 616 Query: 674 -------GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 T +I G G KL+KAQ LG+ I NE + L +L Sbjct: 617 SSSVSKS-----------TYAVIAGSEAGGKLKKAQDLGLSIWNESELLRILD 658 >gi|225419696|ref|ZP_03761999.1| hypothetical protein CLOSTASPAR_06034 [Clostridium asparagiforme DSM 15981] gi|225041660|gb|EEG51906.1| hypothetical protein CLOSTASPAR_06034 [Clostridium asparagiforme DSM 15981] Length = 654 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 192/711 (27%), Positives = 311/711 (43%), Gaps = 65/711 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E + + L +S YYQ S+ I+ + EYD L A+ Sbjct: 1 MEDRIERMKELVSLLSKAGKAYYQESREIMSNFEYDRLYDELTALERE----TGVTLSGS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G E+ L K TH P LSL+K ++EDL+ ++ K Sbjct: 57 PTKRVGYEVLSELPKETHESPMLSLDKTKSVEDLQAWLGDQKGLL------------SWK 104 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG I + Y+ G V A RG+G GE ++ R IP L++ ++ +RGE I Sbjct: 105 MDGLTIVLTYDGGTLVKAVTRGNGEIGEVITPNARVFANIP--LNIAHKGLVVLRGEAVI 162 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAK 252 +DF +N+E+ V Y NPRN SG +R+LN R ++F L + + + Sbjct: 163 LYSDFRRINEEIEDV-DAKYKNPRNLCSGSVRQLNSQITAERNVHFEAFSLVRAEGVDFE 221 Query: 253 G-QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + + ++ GF V + E DGLV D+ + Sbjct: 222 NSRKRQFEWLKSQGFEVVDYREVTAETL--PQAVQEFADAVEGYDIPSDGLVLLFDDIAY 279 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 + LG A+ PR I+ K+ ++ T++ I+ RTG++ PVA EPV + G ++ A Sbjct: 280 GESLGRTAKFPRNSIAFKWQDEIRETKMRYIEWSPSRTGLINPVAVFEPVELEGTTVSRA 339 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 ++HN ++GL+ + DR+ V +A +IP++ D + P Sbjct: 340 SVHNISILEGLE-----------LGEEDRITVYKANMIIPQIADNLTRSGVKH-----IP 383 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C C A++++ VSRDA NI+GL + L Sbjct: 384 EQCPVCGGAT-----EIRQVNDVRSLYCINPDCQAKKIKSFTLLVSRDALNIDGLSEATL 438 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F A I ADIF L R Q+ I + GFG S NL S+ K + +L Sbjct: 439 EKFI----GAGFIHEYADIFHLDRHQE----AIVEMEGFGQKSYDNLVASVAKAADTALP 490 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R I+ LGI +G A++L +++ D L+ V +G ++A+A Sbjct: 491 RVIYGLGIAGIGLANAKALCRHFG---------YEFENMRKADEEELVAVDGIGAVLAKA 541 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYV 670 +E++ + N AV+ L E++ E+ K V TG+L+ R + QE + Sbjct: 542 WMEYFSSEANNEAVDHLFAELTIEKEVVEE-TEQIFAGKTFVITGSLEHFGNRKELQELI 600 Query: 671 TQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G + +S KT +I D +P SK +KA+ LGV I+ EE+FL +L+ Sbjct: 601 ESKGGKAAGSVSAKTSYLINNDSLSPSSKNKKAKDLGVPIITEEEFLRMLE 651 >gi|312962450|ref|ZP_07776941.1| DNA ligase [Pseudomonas fluorescens WH6] gi|311283377|gb|EFQ61967.1| DNA ligase [Pseudomonas fluorescens WH6] Length = 789 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 210/631 (33%), Positives = 333/631 (52%), Gaps = 48/631 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + A + L E+ H+ Y+ +P I D+EYD L A+ P+L + Sbjct: 1 MTAAHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPELVTR---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127 P ++G + +V H IP LSL ++ + +F R+ ++ Sbjct: 58 PTQRVGSAALSAFTQVRHEIPMLSLGNAFDETTMLEFDRRVTEGLDLPVGDLFGGGAAVE 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++ Y+ G+ V A RGDG +GED+S +R + IP L P +E Sbjct: 118 YSCEPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNVRTVRNIPLKLHGTGWPATLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV++SK F LN + VG K +ANPRNAA+G LR+L+ +R L F +G+G+ Sbjct: 178 VRGEVFMSKAGFERLNASQLDVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGIGQ 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + + L++++ G P+++ ++ A + YY ++ + R++LPY+IDG+V+K Sbjct: 238 VTADISDTHIGNLKQLQQWGMPISHELKLAKGIQECLDYYRDIGARRNSLPYEIDGVVFK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G Sbjct: 298 VNSIASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++NATLHN D + L + +GD V+++RAG+VIP+VV ++ R A Sbjct: 358 VTVSNATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVSVVTERRPEHA 406 Query: 426 QPFSFPSFCPICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 + P CP+C S V R +T A +RC G LAC AQ + + HFVSR Sbjct: 407 RAVQIPESCPVCGSHVERTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRR 466 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +I+GLG + ++ + I PAD++ L+ Q + GF D+S L Sbjct: 467 AMDIDGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFADISSKKLI 516 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I + +L RFI++LGI VG E A+ LA+ S + + + + L Sbjct: 517 TAIEHSKAPTLARFIYALGIPDVGEETAKVLARSLASLERVRKALPEV----------LT 566 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 +P VG +A I F+++ N + ALL Sbjct: 567 YLPDVGLEVAHEIHSFFEDSHNQQVIGALLS 597 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 59/257 (22%), Positives = 104/257 (40%), Gaps = 18/257 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R ++E + K + D + F Q + + Sbjct: 546 VLARSLASLERVRKALPEVLTYLPDVGLEVAHEIHSFFEDSHNQQVIGALLSPDECALQL 605 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 S + +L + L + VG A+ LA + S + + D Sbjct: 606 QDQGELSAEFAASTTLGGLLDKLHVPSVGPGAAQKLADKFTSLEGVIKA----------D 655 Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649 WL + +P + A+A+ +F+ N N A+E LK+ +K V Sbjct: 656 WLDMRQALP---EKQAKAVRDFFDNADNANRALAIEQQLKDFGMHWQSEKKVVEGLPEAG 712 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 V TG+L+ + R A+E + LGA V+ +S KT ++ G GSKL KA +LG+K++ Sbjct: 713 HTWVLTGSLELMSRDVAKEKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGLKVL 772 Query: 710 NEEQFLFLLQQYNTTLR 726 +EE F+ L ++N + Sbjct: 773 DEEAFVAFLAKHNIPID 789 >gi|160947381|ref|ZP_02094548.1| hypothetical protein PEPMIC_01315 [Parvimonas micra ATCC 33270] gi|158446515|gb|EDP23510.1| hypothetical protein PEPMIC_01315 [Parvimonas micra ATCC 33270] Length = 662 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 203/707 (28%), Positives = 363/707 (51%), Gaps = 57/707 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++ + ++++ YY +P + D+EYD L + PN P ++ Sbjct: 2 DKMKEIVEKLNLWAYQYYTLDEPSVSDAEYDKLYDELLKLEKE----TGVILPNSPTQRV 57 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----NSIFFTLEPK 133 GGE+ K TH SL+K + E+L++F R + + + ++ + +E K Sbjct: 58 GGEVLEKFEKHTHLKELYSLQKAQSFEELKEFHNRCTKLLNEYNSINNSKKTLEYYVEFK 117 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 DG I + Y+KG V A+ RG+G GE+V ++ I +IP L ++ ++E++GE + Sbjct: 118 FDGLTINLTYDKGILVSASTRGNGVYGEEVFEQVKTIKSIP--LEIDYKGLVEIQGEAIM 175 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + N+ P N RNAA+G +R L+P +R L+ F++ +G S+ K Sbjct: 176 PLSALTKFNETA----EVPLKNARNAAAGAIRNLDPKKTASRNLDAFIYNVGFKSDEQFK 231 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q EM+ ++ F VN ++ I E+ +R + Y DG+V KV++F L+ Sbjct: 232 TQKEMISFLKENKFKVNEYEKKCLNLKEIKDKIREIDVLRKKVDYLTDGVVIKVNDFELR 291 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + G + PR+ I++KF ++ ST L ++ +GRTG +TP A LEPV IG + AT Sbjct: 292 EFFGYTNKFPRFAIAYKFEAEEYSTILKEVVWNVGRTGKVTPTAILEPVEIGDVTVQRAT 351 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 L+N D I + +++ RVL++R+ +VIP+++ + + + + P+ Sbjct: 352 LNNYDDI-----------LRKKVKINSRVLIRRSNDVIPEILGTMDED-NGNEIEIKMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S ++RD CT LAC+ Q L HF S++A NIEGL ++ ++ Sbjct: 400 HCPYCNSELIRD--------GVHFFCTNTLACTPQLTSSLVHFSSKNAMNIEGLSEKTIE 451 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F + I+ L+ + + + F D V NL +SI + + ++LE Sbjct: 452 SLFDK----LGVDKVYKIYDLKYDELIT------LEKFKDKKVNNLLNSIEESKKVNLEN 501 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FI++LGI++VG + A+ LAK Y++ N + L+++ VGD++A +I Sbjct: 502 FIYALGIKNVGIKTAKDLAKKYINLDNLRETT----------VEELLQINDVGDVVANSI 551 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 EF+ + + A+ LL++ + +++ SE +KK+V TGT + +R ++ +Q Sbjct: 552 FEFFNDEYSKDALNKLLEKG-IEVIPYKEISKSEFTDKKIVITGTFKNYKRKDLEDIFSQ 610 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G +V + +++ TD ++VG+ GSKL+KAQ+LG+ I++E+ L+ Sbjct: 611 NGLIVQSAVAKSTDFLVVGEKAGSKLKKAQELGINIISEKNLEEFLK 657 >gi|289626390|ref|ZP_06459344.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330866315|gb|EGH01024.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 787 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 220/656 (33%), Positives = 336/656 (51%), Gaps = 53/656 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + L E+ H+ YY +P I D EYD L A+ P L P+ Sbjct: 1 MKAVETRILELRAELDEHNYRYYVLDEPSIPDVEYDRLFHELKALEVENPHLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127 P ++G + +V H +P LSL + D+ +F R+ + + Sbjct: 58 PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQ 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP L P+++E Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV++SK F LN + +G K +ANPRNAA+G LR+L+ R L F +GLG+ Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 TS A +L+ ++ G PV+ + AN + YY ++ R TL Y+IDG+V+K Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSRELNLANGVEECLDYYRDIGERRLTLNYEIDGVVFK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++ R +A Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406 Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 + P CP+C S V R +T A +RC G LAC AQ + + H+VSR Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG + ++ + I PAD++ L+ Q + GF ++S L Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I R +L RFI++LGI VG E A+ LA+ S Q + + L Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650 +P VG +A I F+++ N ++ALL E + + S+ +E Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 99/256 (38%), Gaps = 18/256 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R +++ + + + D + F + + G Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLQL 603 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + +LE I L I VG A+ LA + + + + H Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISADWLDMRHTLP- 662 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENK 650 + A+++ +F+ + + A+EA LK+ +K V + + Sbjct: 663 -----------EKQAKSVRDFFDDSAHAERARAIEAQLKDFGMHWRSEKKTVEGLPLAGQ 711 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 V TG+L+++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++ Sbjct: 712 TWVLTGSLERMSRDVAKEKLETLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLD 771 Query: 711 EEQFLFLLQQYNTTLR 726 E+ L L + + Sbjct: 772 EDALLKRLTELGVAVD 787 >gi|294786747|ref|ZP_06752001.1| DNA ligase, NAD-dependent [Parascardovia denticolens F0305] gi|315226368|ref|ZP_07868156.1| DNA ligase [Parascardovia denticolens DSM 10105] gi|294485580|gb|EFG33214.1| DNA ligase, NAD-dependent [Parascardovia denticolens F0305] gi|315120500|gb|EFT83632.1| DNA ligase [Parascardovia denticolens DSM 10105] Length = 868 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 211/812 (25%), Positives = 355/812 (43%), Gaps = 113/812 (13%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 +K I + AL ++ A + + + + YY P+ DS YD + Sbjct: 44 QKMGKIDLVALPVDLAARLWAKVASWVEDDQIAYYVNDSPVSSDSAYDQRMLTLQRLEAQ 103 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP L ++P P +++GG + +V H LSL+ ++++E+L+ + + R K Sbjct: 104 FPAL---DNPQSPTHRVGGTFSNDFTEVRHPSRMLSLDDVFSLEELKDWYQSLVRDLDWK 160 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 + + T E KIDG + + Y G RGDG +GED++ +R I IP L+ + Sbjct: 161 AGDPLPMTSEVKIDGLALNLVYRHGVLEQGLTRGDGVTGEDITMNVRTIAGIPSQLAGDP 220 Query: 182 ---PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237 P+++E+RGEV++ +DF LND+ A G+ +ANPRNAA+G LR+ +P R L+ Sbjct: 221 ADIPDLVEIRGEVFMRFDDFRKLNDQAQAEGKPTFANPRNAAAGSLRQKDPRITARRRLS 280 Query: 238 FFVHGLGK--------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK 289 F+ HGLG + Q + R P + R N++ I+ + Sbjct: 281 FYAHGLGILEWGPQAAVRHPDIERQSQAYDLYRTWRIPTSPHNRLVNSYVEILDMISYYG 340 Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349 R + + +DG+V KVD+ +LQ++LG AR+PRW I++K+ ++ +T LLDI +Q+GRT Sbjct: 341 DHRYDIEHPLDGIVVKVDQLALQRRLGATARAPRWAIAYKYPPEEVNTDLLDIRVQVGRT 400 Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409 G +TPVA L PV + G+ + TLHN +K + I +GD V+V++AG+V Sbjct: 401 GRVTPVAHLRPVQVAGSTVARTTLHNPSEVK-----------HKGILIGDLVVVRKAGDV 449 Query: 410 IPKVVDIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSA 466 IP++V ++ R + F P CP C + + + + RC +C A Sbjct: 450 IPELVGPVLAARPEREGRLREFVMPDRCPSCGTELAPE-----KEGDKDWRCPNVESCPA 504 Query: 467 QQLERLKHFVSRDAFNIEGLGKQ------------------------------------- 489 Q R+ H SR AF+IE LG+Q Sbjct: 505 QLANRVLHLASRQAFDIEHLGEQSALALTNPENNRPDSVDEYLPDIKEILIEEGEEPPVY 564 Query: 490 -QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL--GFGDVSVTNLYDSINKRR 546 + + ++ AD+F L+ S I + + + R+ Sbjct: 565 LPAEGLRLPPEQKPVVQSEADLFALRPEDLRSVRTWREIPLVEISERTDPDTGKKKRIRK 624 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR--VPLV 604 N + + +SLA+ S A A D W L+ + V Sbjct: 625 NRGGSGLWTQVPAFFNLPKKGQSLAETQPSKTTLAMFEEFDKARQADLWRVLVALSIRHV 684 Query: 605 GDIIAQAIVEFY--------QNPRNICAVEALLKEVSPSI-------------------- 636 G A+ I + + + + +++A+ E++ S+ Sbjct: 685 GAPTARLIAKHFKTLTAISQASEEELTSIDAIGDEIAKSVYQWFREAQDPSSWRGQILAA 744 Query: 637 ---------GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 + K +V TGTL+ R A+E + G + +S+KT Sbjct: 745 WAQAGIGRKAAETVTDEQTLAGKTVVVTGTLEDFSRESAKEAIESRGGKAAGSVSKKTSY 804 Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++VG N GSK KA+ LG+ +++E+QF LL+ Sbjct: 805 VVVGANAGSKASKAEALGIPMLDEDQFKTLLE 836 >gi|331013366|gb|EGH93422.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 787 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 219/656 (33%), Positives = 337/656 (51%), Gaps = 53/656 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + L E+ H+ Y+ +P I D EYD L A+ P L P+ Sbjct: 1 MKAVETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127 P ++G + +V H +P LSL + D+ +F R+ + + Sbjct: 58 PTQRVGSAALSAFTQVRHEMPMLSLGNAFEESDMLEFDRRVTEGLDLPAGDLFGAGSKVQ 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP L P+++E Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVCGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV++SK F LN + +G K +ANPRNAA+G LR+L+ R L F +GLG+ Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 TS A +L+ ++ G PV+ ++ AN + YY ++ R TL Y+IDG+V+K Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSRELKLANGVEECLDYYRDIGERRLTLSYEIDGVVFK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++ R +A Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406 Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 + P CP+C S V R +T A +RC G LAC AQ + + H+VSR Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG + ++ + I PAD++ L+ Q + GF ++S L Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I R +L RFI++LGI VG E A+ LA+ S Q + + L Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650 +P VG +A I F+++ N ++ALL E + + S+ +E Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLKLQDQGELGAEFAASTTLEGL 622 Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 105/257 (40%), Gaps = 20/257 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R +++ + + + D + F + + G Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLKL 603 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + +LE I L I VG A+ LA + + + D Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISA----------D 653 Query: 595 WLSLIR-VPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649 WL + + +P + A+++ +F+ + + A+EA LK+ +K V + Sbjct: 654 WLDMRQTLP---EKQAKSVRDFFDDSAHAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 710 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 + V TG+L+++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ ++ Sbjct: 711 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770 Query: 710 NEEQFLFLLQQYNTTLR 726 +E+ L L + T+ Sbjct: 771 DEDALLKRLTELGVTVD 787 >gi|160895209|ref|ZP_02075981.1| hypothetical protein CLOL250_02768 [Clostridium sp. L2-50] gi|156863088|gb|EDO56519.1| hypothetical protein CLOL250_02768 [Clostridium sp. L2-50] Length = 653 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 178/706 (25%), Positives = 314/706 (44%), Gaps = 62/706 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + R + L ++++ YYQ I+ + EYDAL + N P Sbjct: 2 EKRDRIKELVEKLNEASKKYYQEDTEIMSNLEYDALYDELVELEKE----TGIVMSNSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +G E+ L K H P LSL+K ++E L ++ + + K+D Sbjct: 58 VHVGYEIVSELPKEVHEHPMLSLDKTKSVEALAAWL------------GTHQGVISWKLD 105 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + YE G V A RG+G GE ++ R IP + + +RGE I Sbjct: 106 GLTVVLTYENGTLVKAVTRGNGLEGEVITNNARVFANIP--KEIPYKGKLTIRGEAVIKY 163 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRR-LNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 +DF +N+ IA Y NPRN SG +R+ N R ++FF L ++ K Sbjct: 164 SDFEKINE-QIADADAKYKNPRNLCSGSVRQLNNRITKERNVHFFAFNLVDGEDVDFKNS 222 Query: 255 YEML-QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 + + GF V + + + DGLV +++ + K Sbjct: 223 FSYELDWLEQQGFDVVEHY--LIDADKLPERVAQFAEQIEKNDFPSDGLVLVLEDLAYGK 280 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG A+ PR ++ K+A++QA T L ++ RTG++ PVA +PV++ G + A++ Sbjct: 281 SLGRTAKFPRDSMAFKWADEQAVTHLQYVEWSPSRTGLINPVAVFDPVSLEGTTVGRASI 340 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN ++ L + +GD + V +A +IP++ + + P Sbjct: 341 HNVSILRSLQ-----------LGIGDEISVYKANMIIPQIAENHTR-----SGNVPIPES 384 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C + + + G C A++L+ HFVSR+A NI+GL + +D Sbjct: 385 CPACG-GLTKIVTEGEGVDQVETLYCTNEFCPAKKLKSFAHFVSRNAMNIDGLSEATIDK 443 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F + + D++ + R ++ +I + GFG+ S L +++ R+ ++ RF Sbjct: 444 FIEQ----GYLDHLDDLYHMNRHEE----EIVELEGFGEKSYAKLIQAVDTSRHTTMNRF 495 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 ++ LGI VG A+ + K++ + N+ + D + + +G +IA+ IV Sbjct: 496 VYGLGIPGVGDATAKLICKHFKN---------NLDQIMHADVEAYTEIDGIGTVIAEEIV 546 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQ 672 +++NP N ++ LL E+ + V + V TG+L++ R + ++Y+ Sbjct: 547 RYFKNPSNCAIIDKLLHEL--EFEAETETVPQTLAGITFVITGSLEQFANRDEMKQYIED 604 Query: 673 LGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLF 716 G V+ +S KT ++ D + SK +KAQ LG+ I++E QFL Sbjct: 605 RGGKVAGSVSSKTGYLVNNDVTSTSSKNKKAQSLGIPIISETQFLE 650 >gi|289649545|ref|ZP_06480888.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aesculi str. 2250] Length = 787 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 219/656 (33%), Positives = 336/656 (51%), Gaps = 53/656 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + L E+ H+ Y+ +P I D EYD L A+ P L P+ Sbjct: 1 MKAVETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEVENPHLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127 P ++G + +V H +P LSL + D+ +F R+ + + Sbjct: 58 PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQ 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP L P+++E Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV++SK F LN + +G K +ANPRNAA+G LR+L+ R L F +GLG+ Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 TS A +L+ ++ G PV+ + AN + YY ++ R TL Y+IDG+V+K Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSRELNLANGVEECLDYYRDIGERRLTLNYEIDGVVFK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++ R +A Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406 Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 + P CP+C S V R +T A +RC G LAC AQ + + H+VSR Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG + ++ + I PAD++ L+ Q + GF ++S L Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I R +L RFI++LGI VG E A+ LA+ S Q + + L Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650 +P VG +A I F+++ N ++ALL E + + S+ +E Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 99/256 (38%), Gaps = 18/256 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R +++ + + + D + F + + G Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLQL 603 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + +LE I L I VG A+ LA + + + + H Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISADWLDMRHTLP- 662 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENK 650 + A+++ +F+ + + A+EA LK+ +K V + + Sbjct: 663 -----------EKQAKSVRDFFDDSAHAERARAIEAQLKDFGMHWRSEKKTVEGLPLAGQ 711 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 V TG+L+++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++ Sbjct: 712 TWVLTGSLERMSRDVAKEKLETLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLD 771 Query: 711 EEQFLFLLQQYNTTLR 726 E+ L L + + Sbjct: 772 EDALLKRLTELGVAVD 787 >gi|163816857|ref|ZP_02208220.1| hypothetical protein COPEUT_03048 [Coprococcus eutactus ATCC 27759] gi|158448114|gb|EDP25109.1| hypothetical protein COPEUT_03048 [Coprococcus eutactus ATCC 27759] Length = 678 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 173/722 (23%), Positives = 315/722 (43%), Gaps = 61/722 (8%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 ++ I + + L ++++ YY I+ + EYDAL A+ Sbjct: 13 KENNDISGNNDNGKIARIKELVKQLNDAAKKYYMEDTEIMSNLEYDALYDELSALEKE-- 70 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 N P K+G E+ L K H P LSL+K ++ L ++ Sbjct: 71 --TGMVMSNSPTVKVGYEVVSELPKEAHEHPMLSLDKTKDVGALASWL------------ 116 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 + K+DG + + YE G+ + A RG+G GE ++ + +P + Sbjct: 117 GGQKGVISWKMDGLTVVLTYENGEMIKAVTRGNGEIGEVITNNAKVFANVPH--HIPYKG 174 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 + +RGE I +DF A+N+++ Y NPRN SG +R+L+ R ++FF Sbjct: 175 KLTIRGEAVIKYSDFNAINEKITDA-ESKYKNPRNLCSGSVRQLDNKITKERNVHFFAFN 233 Query: 243 LGKTSEIFAKGQYEML-QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 L ++ ++ + GF V I E + + DG Sbjct: 234 LVDGEDVDFHNSFKYQLDWLEQQGFTVVEHY--LTDSAAIPDKVREFSEKITENDFPSDG 291 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 LV +D+ + + LG A+ PR ++ K+A+++A T L ++ RTG++ PVA +PV Sbjct: 292 LVLMLDDLAYGRSLGTTAKFPRNAMAFKWADEEAITHLRYVEWSPSRTGLINPVAVFDPV 351 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G ++ A++HN +K L + GD + V +A +IP++ + Sbjct: 352 ELEGTTVSRASIHNVSILKSLA-----------LGEGDEIAVYKANMIIPQIARNLTM-- 398 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 + P+ CP C C A++L+ H+VSR+A Sbjct: 399 ---SGNVVIPAACPACGGETEIVREEGGAVSGVETLYCTNQFCPAKKLKSFSHYVSRNAL 455 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 NI+GL + ++ F + + P D++ L ++ I + GFG+ S L + Sbjct: 456 NIDGLSEATIEKFIDEK----ILEEPPDLYKLAAHREH----IVELEGFGEKSYNKLVAA 507 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 ++ R ++ R + LGI +VG A+ +AK++ + ++ A D + + + Sbjct: 508 VDASRQTNMWRLVNGLGIANVGEATAKLMAKHFAN---------DMDAMKKADVSAYVEI 558 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G +IA+ IV +++N +N ++ L+ E++ + + K V TG+L Sbjct: 559 DGIGQVIAEDIVRYFENEKNCAIIDRLMAELTFVDEASDTEQD--LAGKVFVITGSLTHF 616 Query: 662 -QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718 R++ +E + G V+ +S KT +I D + SK +KA+ L V I++EE FL L+ Sbjct: 617 ENRNQLKELIESRGGQVTGSVSAKTSYLINNDVNSTSSKNKKAKSLDVPIISEEDFLELI 676 Query: 719 QQ 720 Q Sbjct: 677 GQ 678 >gi|116329958|ref|YP_799676.1| DNA ligase (NAD+) [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122282269|sp|Q04W02|DNLJ_LEPBJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116123647|gb|ABJ74918.1| DNA ligase (NAD+) [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 681 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 198/732 (27%), Positives = 329/732 (44%), Gaps = 58/732 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M K++ LS ++A+K ++ L EI +H YY ++P I D ++D L +R + Sbjct: 1 MSKKKKTYQNTLSEKEAKKVIAKLADEIRHHQYLYYVKNQPEISDFDFDQLFKRLRDLEE 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP D N P +G +++ K H +P LSL +N ++L ++ + Sbjct: 61 EFPQFK---DLNSPTLVVGSDLDKDFEKFQHKLPVLSLINTYNDDELLDWVNKT------ 111 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 D +++E KIDG I + YE G RG G G+DV+ IR + IP L Sbjct: 112 --DPDGLYSVEWKIDGASIVLYYENGMLKNGVTRGSGGIGDDVTDNIRTVRNIPLRLPEP 169 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NF 238 I + +RGEV+++ DF N+ + YANPRN ++G +++ N D + F Sbjct: 170 I--TVYLRGEVFMTFKDFEEFNE----LSSGKYANPRNLSAGSIKQKNSADTAKRPLRIF 223 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 K ++L K+ L FPV I + K + TL + Sbjct: 224 TYDATFPGFTKKFKTHQQILSKLEKLTFPVPPDT-VFVNGSKIAETIKDFKKKKDTLGFP 282 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 DGLV K+++ S + G + SPRW ++KF +R++DI +GRTG +TP + Sbjct: 283 TDGLVIKLNDISKRDAQGYTSHSPRWARAYKFDAIMKESRIVDITYAVGRTGKITPRVEI 342 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPVN+ G +T ATLHN+DYI L + +G V V + GE+IP V ++I Sbjct: 343 EPVNLAGTTVTFATLHNQDYIDEL-----------GVGIGAIVRVAKRGEIIPAVEEVI- 390 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 P F P +CP C+++ ++ N C + + + R Sbjct: 391 ---TPGKDVFKIPDYCPSCKTKTIKKENL-------VDLFCPNPDCPDRVKNGIIFYCQR 440 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 +IEGLG +Q++F + IR AD++ L+ +++ K+ GFG+ S+ + Sbjct: 441 KQMDIEGLGDKQIEFLYDH----GYIRSIADLYDLKDQKE----KLMEEEGFGEKSLAII 492 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLS 597 ++ I + + S+G+ +G ++ L ++ S IA + S Sbjct: 493 FNGIEHSKQKDFRFLLPSIGLPELGHKVTELLIEHGIDSIDEILS-----IAKDKKRISS 547 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTG 656 L+ +P +G +A E + + R + + L K + TG Sbjct: 548 LLEIPGIGPSTIKAFEENFSDKRILKLIARLKNAGLKLKADPIKVSDQQPFAGQSWCVTG 607 Query: 657 TLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + + R KA + V G + +S KT ++ G GSKLEKA +LG+ + NE+QFL Sbjct: 608 SFENFQPRDKAMDLVVYYGGRKVSAVSSKTTHLLAGPGAGSKLEKANELGIVVYNEKQFL 667 Query: 716 FLLQQYNTTLRI 727 LL+ + Sbjct: 668 DLLKSLKINFKN 679 >gi|166154367|ref|YP_001654485.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 434/Bu] gi|166155242|ref|YP_001653497.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335620|ref|ZP_07223864.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis L2tet1] gi|254781287|sp|B0B9Q4|DNLJ_CHLT2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781289|sp|B0BBD3|DNLJ_CHLTB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|165930355|emb|CAP03841.1| NAD-dependent DNA ligase [Chlamydia trachomatis 434/Bu] gi|165931230|emb|CAP06795.1| NAD-dependent DNA ligase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 663 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 217/713 (30%), Positives = 348/713 (48%), Gaps = 71/713 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R + +L E+ HD YY ++P I D YD R I P+ S P Sbjct: 6 RDDYIALCTELVEHDRRYYALNQPTISDYSYDMKMRELQEIEVQHPEWKVSW---SPTMY 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + V HS P LS+ ++++++L +F +R + S ++LE KIDG Sbjct: 63 LGDRPSGQFPVVPHSSPMLSIANVYSLQELEEFFSRTEKLLG----YSPGYSLELKIDGI 118 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + IRYEK F A RG+G GED++A + I ++P L PE +EVRGEV++S Sbjct: 119 AVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSYEA 178 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F LN G+ +ANPRNAA G L+ L+ + + G ++ + +E Sbjct: 179 FEELNACQREQGKLEFANPRNAAGGTLKLLSSKEA-AKRKLDLSVYGLITDQKKRSHFEN 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 LQ GF V +Q + +V E++ +R+ LP IDG+V KVD + Q +LG Sbjct: 238 LQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRAALPMAIDGVVIKVDNIAHQDRLGL 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++ RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+N+D Sbjct: 298 TSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLYNQD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ +DIR+GD V V++ GEVIPK+V I + +R +++P+ PS CP+C Sbjct: 358 EIEK-----------KDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLCPVC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 VV++ + RC L + F S+ A NI+ LG++ + F+ Sbjct: 407 HEPVVKEK--------VSVRCINPLCSGGMLEKIC-FFASKSALNIDHLGEKVVTKLFE- 456 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I +DIF L + GF D S+ NL SI + ++L+R + +L Sbjct: 457 ---VGLISSCSDIFALTEEDLK------QVPGFKDRSIQNLLASIAGAKKVALDRLLTAL 507 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I VG+ A +LA ++ + + L+ + +G +A +IV F+ Sbjct: 508 SIPFVGSSGAIALADHFGTLDKVIEA----------SLDELMSIEGIGPKVAASIVAFFS 557 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL---- 673 N + ++E+ + + + + ++ K V TGTLQ++ R +A+E + L Sbjct: 558 KHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRSLGGKV 616 Query: 674 -------GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 T +I G G KL+KAQ LG+ I NE + +L Sbjct: 617 SSSVSKS-----------TYAVIAGSEAGGKLKKAQDLGLSIWNESKLSRILD 658 >gi|116329438|ref|YP_799158.1| DNA ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|122282782|sp|Q04XH0|DNLJ_LEPBL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116122182|gb|ABJ80225.1| DNA ligase (NAD+) (contains BRCT domain type II) [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 681 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 198/732 (27%), Positives = 329/732 (44%), Gaps = 58/732 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M K++ LS ++A+K ++ L EI +H YY ++P I D ++D L +R + Sbjct: 1 MSKKKKTYQNTLSEKEAKKVIAKLADEIRHHQYLYYVKNQPEISDFDFDQLFKRLRDLEE 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP D N P +G +++ K H +P LSL +N ++L ++ + Sbjct: 61 EFPQFK---DLNSPTLVVGSDLDKDFEKFQHKLPVLSLINTYNDDELLDWVNKT------ 111 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 D +++E KIDG I + YE G RG G G+DV+ IR + IP L Sbjct: 112 --DPDGLYSVEWKIDGASIVLYYENGMLKNGVTRGSGGIGDDVTDNIRTVRNIPLRLPEP 169 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NF 238 I + +RGEV+++ DF N+ + YANPRN ++G +++ N D + F Sbjct: 170 I--TVYLRGEVFMTFKDFEEFNE----LSSGKYANPRNLSAGSIKQKNSADTAKRPLRIF 223 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 K ++L K+ L FPV I + K + TL + Sbjct: 224 TYDATFPGFTKKFKTHQQILSKLEKLTFPVPPDT-VFVNGSKIAETIKDFKKKKDTLGFP 282 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 DGLV K+++ S + G + SPRW ++KF +R++DI +GRTG +TP + Sbjct: 283 TDGLVIKLNDISKRDAQGYTSHSPRWARAYKFDAIMKESRIVDITYAVGRTGKITPRVEI 342 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPVN+ G +T ATLHN+DYI L + +G V V + GE+IP V ++I Sbjct: 343 EPVNLAGTTVTFATLHNQDYIDEL-----------GVGIGAIVRVAKRGEIIPAVEEVI- 390 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 P F P +CP C+++ ++ N C + + + R Sbjct: 391 ---TPGKDVFKIPDYCPSCKTKTIKKENL-------VDLFCPNPDCPDRVKNGIIFYCQR 440 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 +IEGLG +Q++F + IR AD++ L+ +++ K+ GFG+ S+ + Sbjct: 441 KQMDIEGLGDKQIEFLYDH----GYIRSIADLYDLKDQKE----KLIEEEGFGEKSLAII 492 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLS 597 ++ I + + S+G+ +G ++ L ++ S IA + S Sbjct: 493 FNGIEHSKQKDFRFLLPSIGLPELGHKVTELLIEHGIDSIDEILS-----IAKDKKRISS 547 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTG 656 L+ +P +G +A E + + R + + L K + TG Sbjct: 548 LLEIPGIGPSTIKAFEENFSDKRILKLIARLKNAGLKLKADPIKVSDQQPFAGQSWCVTG 607 Query: 657 TLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + + R KA + V G + +S KT ++ G GSKLEKA +LG+ + NE+QFL Sbjct: 608 SFENFQPRDKAMDLVVYYGGRKVSAVSSKTTHLLAGPGAGSKLEKANELGIVVYNEKQFL 667 Query: 716 FLLQQYNTTLRI 727 LL+ + Sbjct: 668 DLLKSLKINFKN 679 >gi|295093347|emb|CBK82438.1| DNA ligase, NAD-dependent [Coprococcus sp. ART55/1] Length = 678 Score = 426 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 171/722 (23%), Positives = 314/722 (43%), Gaps = 61/722 (8%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 ++ I + + L ++++ YY I+ + EYDAL +A+ Sbjct: 13 KENNDISGNNDNGKIARIKELVKQLNDAAKKYYMEDTEIMSNLEYDALYDELNALEKE-- 70 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 N P K+G E+ L K H P LSL+K ++ L ++ Sbjct: 71 --TGMVMSNSPTVKVGYEVVSELPKEAHEHPMLSLDKTKDVGALASWL------------ 116 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 + K+DG + + YE G+ + A RG+G GE ++ + +P + Sbjct: 117 GGQKGVISWKMDGLTVVLTYENGEMIKAVTRGNGEIGEVITNNAKVFANVPH--HIPYKG 174 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 + +RGE I +DF A+N+++ Y NPRN SG +R+L+ R ++FF Sbjct: 175 KLTIRGEAVIKYSDFNAINEKITDA-ESKYKNPRNLCSGSVRQLDNKITKERNVHFFAFN 233 Query: 243 LGKTSEIFAKGQYEML-QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 L ++ ++ + GF V + E + + DG Sbjct: 234 LVDGEDVDFHNSFKYQLDWLEQQGFTVVEHY--LTDSAALPDKVREFSEKITENDFPSDG 291 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 LV +D+ + + LG A+ PR ++ K+A+++A T L ++ RTG++ PVA +PV Sbjct: 292 LVLMLDDLAYGRSLGTTAKFPRNAMAFKWADEEAITHLRYVEWSPSRTGLINPVAVFDPV 351 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G ++ A++HN +K L + GD + V +A +IP++ + Sbjct: 352 ELEGTTVSRASIHNVSILKSLA-----------LGEGDEIAVYKANMIIPQIARNLTM-- 398 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 + P+ CP C C A++L+ H+VSR+A Sbjct: 399 ---SGNVVIPAACPACGGETEIVREEGGAASGVETLYCTNQFCPAKKLKSFSHYVSRNAL 455 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 NI+GL + ++ F + D++ L ++ I + GFG+ S L + Sbjct: 456 NIDGLSEATIEKFIDEKILEEL----PDLYKLAAHREH----IVELEGFGEKSYNKLVAA 507 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 ++ R ++ R + LGI +VG A+ +AK++ + ++ A D + + + Sbjct: 508 VDASRQTNMWRLVNGLGIANVGEATAKLMAKHFAN---------DMDAMKKADVSAYVEI 558 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G +IA+ IV +++N +N ++ L+ E++ + + K V TG+L Sbjct: 559 DGIGQVIAEDIVRYFENEKNCAIIDRLMAELTFVDEVSDTEQD--LAGKVFVITGSLTHF 616 Query: 662 -QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718 R++ +E + G V+ +S KT +I D + SK +KA+ L V I++EE FL L+ Sbjct: 617 DNRNQLKELIESRGGQVTGSVSAKTSYLINNDVNSTSSKNKKAKSLDVPIISEEDFLELI 676 Query: 719 QQ 720 Q Sbjct: 677 GQ 678 >gi|313903518|ref|ZP_07836909.1| DNA ligase, NAD-dependent [Thermaerobacter subterraneus DSM 13965] gi|313466339|gb|EFR61862.1| DNA ligase, NAD-dependent [Thermaerobacter subterraneus DSM 13965] Length = 817 Score = 426 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 227/632 (35%), Positives = 338/632 (53%), Gaps = 52/632 (8%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 +R + A +E AR + +L ++I +HD YY +P I D+ YDAL R+ + F Sbjct: 44 ERPAEDVPA-DLEAARARVEALREQIRHHDYLYYVLDRPEIDDAAYDALMRQLRELEQRF 102 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P+L P+ P ++GG +V H+ P LSL+ ++ E+L F R+ R Sbjct: 103 PELV---TPDSPTQRVGGRPAAPFARVEHAEPMLSLDNAFSREELEAFDQRVRRAVG--- 156 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 + + + E KIDG I + YE G+FV A RGDG +GEDV+A +R I ++P L Sbjct: 157 -DDVAYVAELKIDGLSIALTYEGGRFVRGATRGDGEAGEDVTANLRTIRSLPLRLRDRER 215 Query: 183 E---IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238 +E+RGEVY++ + F LN E A G P+ANPRNAA+G +R+L+P +R LN Sbjct: 216 PVPRRVEIRGEVYMTFDAFRRLNQEQEARGLAPFANPRNAAAGSVRQLDPAVTASRSLNL 275 Query: 239 FVHGLGKT--SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296 +V+ L E + Q+E+LQ +R G PVN R+ + +Y +E R LP Sbjct: 276 WVYALAGWEGDEPAPRSQWEVLQTLRAWGLPVNPHARRCTGLDELFAYIDEWAERRHQLP 335 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 Y DG+V KVD+ Q+QLG ARSPRW I++KF ++A TR+ DI + +GRTG LTPVA Sbjct: 336 YLTDGIVIKVDDLEQQRQLGATARSPRWAIAYKFPAEKARTRVRDILVSVGRTGALTPVA 395 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 L+PV + G ++ A+LHN DYI+ +D+R+GD V+V +AGE+IP+VV++ Sbjct: 396 VLDPVLLAGTTVSRASLHNADYIR-----------EKDVRIGDLVVVHKAGEIIPEVVEV 444 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 + R +PFS P CP C S VVR AA RC + Q ER++HF Sbjct: 445 VKEARTGAERPFSMPERCPACGSPVVRVEGE------AATRCPNAACPAQQL-ERIRHFA 497 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 SRDA +IEGLG ++ +R AD++ L+ + + G S Sbjct: 498 SRDAMDIEGLGPAIIEQLVGR----GLVRDVADLYHLEPE------PLAQLERMGPKSAA 547 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 NL +I+ R L R ++ LGIR VG +A LA+++ + Q Sbjct: 548 NLVAAIDASRGRPLRRLLYGLGIRFVGERVAGLLARHFGTIQRLMAAGP----------D 597 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L+ VP +G IA+++V F+++ N + L Sbjct: 598 ELMAVPEIGPRIAESVVIFFRDEHNRQLIRRL 629 Score = 144 bits (362), Expect = 7e-32, Method: Composition-based stats. Identities = 30/75 (40%), Positives = 47/75 (62%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + K VFTG L + R +AQE V LG + +SRKTD ++ G+ GSKL +A++LG+ Sbjct: 739 VAGKTFVFTGGLASMTRDEAQELVEALGGRATGSVSRKTDYVVAGEGAGSKLARARELGI 798 Query: 707 KIMNEEQFLFLLQQY 721 +++E FL L+ + Sbjct: 799 PVLDEAAFLRLVGRE 813 >gi|293188969|ref|ZP_06607703.1| DNA ligase, NAD-dependent [Actinomyces odontolyticus F0309] gi|292822104|gb|EFF81029.1| DNA ligase, NAD-dependent [Actinomyces odontolyticus F0309] Length = 777 Score = 426 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 206/798 (25%), Positives = 341/798 (42%), Gaps = 113/798 (14%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 + P+ + E R + L I+ YY P + D++YD + R + I +P L Sbjct: 1 MDPMADSTFETTRDRYNDLVDRINDARAAYYDRDSPTLADADYDRMYREVEQIEERYPQL 60 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 + P +GG ++ +V H +SL+ ++++E+L + TR+ D Sbjct: 61 ---RSADSPTMSVGGSVDSGFSEVRHLAQMMSLDDVFSLEELAAWETRMAEATGISD--- 114 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + T E K+DG I + YE G+ V AA RGDG+ GEDV+A R I +IP+ L+ +P I Sbjct: 115 LEMTTEVKVDGLSINLLYENGRLVRAATRGDGYVGEDVTANARTIASIPQTLTGTVPARI 174 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG 244 EVRGEVY DF A N+ + G K + N RNAASG LR+ +PT+ R L+ HG+G Sbjct: 175 EVRGEVYFPVADFAAFNEARVEAGEKTFVNARNAASGSLRQKDPTETAKRPLSMVAHGIG 234 Query: 245 KT----SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 Q +++R G PV+ R I E+ R L ++ID Sbjct: 235 FVEVGEDFTEPTTQMGWYEQLRDWGLPVSPYTRMLTGRKAIEERIAELGEKRHDLEHEID 294 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V K+++ LQ+ LG +R+PRW ++KF ++ TRLLDI +Q+GRTG +TP +E Sbjct: 295 GVVVKINDLDLQRSLGSTSRTPRWAAAYKFPPEEVHTRLLDIRVQVGRTGRVTPYGVMES 354 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V + G+ + ATLHN + + + +GD V++++AG+VIP++V + + Sbjct: 355 VLVAGSNVARATLHNAQEVAR-----------KGVLIGDLVVLRKAGDVIPEIVAPVEDA 403 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R+ +PF P CP C + +V++ + RC C AQ ERL H +R A Sbjct: 404 RNGSERPFVMPKQCPSCGTTLVQE-----KEGDVDLRCPNKGLCPAQITERLAHVGARSA 458 Query: 481 FNIEGLGKQQLDFFFKSEDP---------------------------------------- 500 ++EGLG + + E+ Sbjct: 459 LDVEGLGDESALAMTQPENDRDEVAAALVAGHSVTLEDGTVLTLEGGRELPHGEQITRAE 518 Query: 501 -------AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 A ++R A +F L+ + + G+ + + + Sbjct: 519 ELLPAPQAPALRTEAALFDLRAEDLRDVMVWKPVKKKGEETGDWKQVRYFWTKAYKPRKL 578 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + ++ + E+ + L + + VG A+A+ Sbjct: 579 RGQTVFEPIEPSASKG-------TEKMLAELEKAKSQPLARVLVALSIRHVGPTAARALA 631 Query: 614 E-FYQNPRNICA-VEAL------------------------------LKEVSPSIGRHEK 641 E F A VE L + + Sbjct: 632 EKFLSMDALRAASVEELSAVEGVGEEIGRSLRDWFTVDWHLEVLQAWARAGVRMADEAPE 691 Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701 S + +V +G + R A+E +T G + +S+KT +++ G GSK +KA Sbjct: 692 PTSDVLAGLTIVVSGAMPGYDREGAKEAITSRGGKAAGSVSKKTSLVVAGPGAGSKEKKA 751 Query: 702 QQLGVKIMNEEQFLFLLQ 719 ++LGV ++ E+QF LL+ Sbjct: 752 KELGVPVITEQQFADLLE 769 >gi|45659103|ref|YP_003189.1| NAD dependent DNA ligase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|81406496|sp|Q72MA6|DNLJ_LEPIC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|45602349|gb|AAS71826.1| NAD dependent DNA ligase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 681 Score = 426 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 198/732 (27%), Positives = 329/732 (44%), Gaps = 58/732 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M K++ + LS ++A+ ++ L EI +H YY + P I D ++D L RR + Sbjct: 1 MPKKKEDSQKTLSEKEAKGLIAKLSDEIRHHQYLYYVKNDPKISDFDFDQLFRRLQDLEE 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP D P +G +++ K H +P LSL +N +L +++ + Sbjct: 61 EFPQFK---DLASPTLVVGSDLDKDFEKFQHKLPVLSLINTYNDNELLEWVNKT------ 111 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 D +++E KIDG I + YE G RG G G+DV+ IR I IP L Sbjct: 112 --DPEGLYSVEWKIDGASIVLYYENGILKNGVTRGSGGIGDDVTDNIRTIRNIPLRLPEP 169 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NF 238 I + +RGEV+++ DF N + YANPRN ++G +++ N +D + F Sbjct: 170 I--TVYLRGEVFMTFKDFEEFNA----LSSGKYANPRNLSAGSIKQKNSSDTAKRPLRIF 223 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 E K E+ K+ L FPV + I E K + +L + Sbjct: 224 TYDATFPNMEKKFKTHQEIFSKLEKLTFPVPPNTAFVSG-SKIAKTIQEFKKQKDSLGFP 282 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 DGLV K+++ S + LG + SPRW ++KF ++++DI +GRTG +TP A + Sbjct: 283 TDGLVIKLNDISKRDALGYTSHSPRWARAYKFDAIMKESKIVDITYAVGRTGKITPRAEI 342 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EP+++ G +T ATLHN+DYI L + +G V V + GE+IP V +++ Sbjct: 343 EPISLAGTTVTFATLHNQDYIDEL-----------GVGIGAIVRVAKRGEIIPAVEEVVT 391 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + F P CP C ++ + K C + + + R Sbjct: 392 PGKE----VFKIPDRCPSCNTQTI-------KKESLVDLFCPNPDCPDRVKNGIIFYCQR 440 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 +IEGLG +Q++F + + I+ AD++ L+ +++ K+ GFG+ SV + Sbjct: 441 KQMDIEGLGDKQIEFLYDHD----YIKSIADLYDLKDQKE----KLMEEEGFGEKSVNII 492 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLS 597 I + + + SLG+ +G ++ L ++ S IA + S Sbjct: 493 LKGIEQSKQKDFRFLLPSLGLSELGHKVTELLIEHGIDSIDEILS-----IAKDQKKIES 547 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTG 656 L+ +P +G QA E + + R + +E L K + + TG Sbjct: 548 LLEIPGIGPSTIQAFQENFSDKRILKLIERLKKAGLKMKADPIQVADQQPFAGQSWCVTG 607 Query: 657 TLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + + R KA + + G + +S KT ++ G GSKLEKA +LGV + +E+QFL Sbjct: 608 SFENFQPRDKAMDLIVYYGGRKVSAVSSKTTHLLAGPGAGSKLEKANELGVSVYDEKQFL 667 Query: 716 FLLQQYNTTLRI 727 LL+ + Sbjct: 668 DLLKSLKIDFKN 679 >gi|212696137|ref|ZP_03304265.1| hypothetical protein ANHYDRO_00673 [Anaerococcus hydrogenalis DSM 7454] gi|212676766|gb|EEB36373.1| hypothetical protein ANHYDRO_00673 [Anaerococcus hydrogenalis DSM 7454] Length = 668 Score = 425 bits (1093), Expect = e-116, Method: Composition-based stats. Identities = 191/712 (26%), Positives = 340/712 (47%), Gaps = 59/712 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + ++ L +I+ + YY +PI+ D EYD L + ++ + P + Sbjct: 6 KIKIDELIDKINELNYHYYTLDEPIVSDGEYDKLYDELRELENS----TGYINAFSPTQR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLE 131 +GG + K H S +K NI+ L+ +I R + + ++ + F E Sbjct: 62 VGGTILDKFEKHFHITRLYSQDKSQNIDQLKDWIIRTKKLRDQYNNSHDDKLEKLEFLTE 121 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG I + YE G A+ RG+G GEDV+ + IPTIP + ++E++GE Sbjct: 122 YKFDGLTINLTYENGLLKTASTRGNGIVGEDVTKQVLTIPTIPTKIKE--KSLLEIQGEA 179 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 + + N+E P N RNAA+G +R L+ + + T+ + Sbjct: 180 VMPLSSLKKYNEE----NEIPLKNARNAAAGAIRNLDTSQTRKRNLKAYFYQISTNSLDF 235 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 K + + L + PV + F IV + +K R + DG+V KV++ Sbjct: 236 KTEEDKLNFLEEQKLPVYPYKKLIKNFDEIVKEIDYIKEERHHIDVLTDGVVIKVNDVKT 295 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+ LG + PRW I++K+ ++ +T+LLD+ +GRTG +TP A LEPV+ G + A Sbjct: 296 QEVLGYTNKFPRWSIAYKYDPEEYTTKLLDVVWNVGRTGKVTPSAILEPVDFSGVTVQRA 355 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TL+N D I + +++G +V ++R+ +VIP+++ ++ + P Sbjct: 356 TLNNYDDI-----------LRKKVKIGSQVFIRRSNDVIPEILGVVDEN-QENTVEIKKP 403 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C S + + C ++C+ Q R+ HF SRDA +IEGL ++ + Sbjct: 404 TKCPYCHSEL--------IEGNVHIYCPNSISCTPQLKARMVHFASRDAMDIEGLSEKTV 455 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F D I+ D++ L+ + + F + NL +I + L Sbjct: 456 ELFINELD----IKEIYDLYDLKYEDLIN------LESFKEKKTNNLLQAIENSKKCDLN 505 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 FI+++GI +VG + AR LA+ Y S +N L+ V +G+ + Sbjct: 506 HFIYAIGIPNVGVKTARDLAEKYKSLENLRNAKE----------DDLVEVEDIGEKTSHD 555 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 IVEF+ + +++ LL++ E VS+ +E K+V TG+++ +R+ ++ + Sbjct: 556 IVEFFNDKNIKESIDKLLEKGIKIKKIEESEVSNSLEGMKIVITGSIENYKRNDIKKLIL 615 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEE--QFLFLLQQ 720 V++ +S+ TD+++ G+ PGSK EKA QLG+K++ NEE +F+ L++ Sbjct: 616 DHNGDVTSSVSKNTDLVLCGEKPGSKKEKADQLGIKVLENEELFEFIRKLEE 667 >gi|24216818|ref|NP_714299.1| NAD dependent DNA ligase [Leptospira interrogans serovar Lai str. 56601] gi|81465271|sp|Q8EYU4|DNLJ_LEPIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|24198185|gb|AAN51317.1| NAD dependent DNA ligase [Leptospira interrogans serovar Lai str. 56601] Length = 681 Score = 425 bits (1093), Expect = e-116, Method: Composition-based stats. Identities = 198/732 (27%), Positives = 329/732 (44%), Gaps = 58/732 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M K++ + LS ++A+ ++ L EI +H YY + P I D ++D L RR + Sbjct: 1 MPKKKEDSQKTLSEKEAKGLIAKLSDEIRHHQYLYYVKNDPKISDFDFDQLFRRLQDLEE 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP D P +G +++ K H +P LSL +N +L +++ + Sbjct: 61 EFPQFK---DLASPTLVVGSDLDKDFEKFQHKLPVLSLINTYNDNELLEWVNKT------ 111 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 D +++E KIDG I + YE G RG G G+DV+ IR I IP L Sbjct: 112 --DPEGLYSVEWKIDGASIVLYYENGILKNGVTRGSGGIGDDVTDNIRTIRNIPLRLPKP 169 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NF 238 I + +RGEV+++ DF N + YANPRN ++G +++ N +D + F Sbjct: 170 I--TVYLRGEVFMTFKDFEEFNA----LSSGKYANPRNLSAGSIKQKNSSDTAKRPLRIF 223 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 E K E+ K+ L FPV + I E K + +L + Sbjct: 224 TYDATFPNMEKKFKTHQEIFSKLEKLTFPVPPNTAFVSG-SKIAKTIQEFKKQKDSLGFP 282 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 DGLV K+++ S + LG + SPRW ++KF ++++DI +GRTG +TP A + Sbjct: 283 TDGLVIKLNDISKRDALGYTSHSPRWARAYKFDAIMKESKIVDITYAVGRTGKITPRAEI 342 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EP+++ G +T ATLHN+DYI L + +G V V + GE+IP V +++ Sbjct: 343 EPISLAGTTVTFATLHNQDYIDEL-----------GVGIGAIVRVAKRGEIIPAVEEVVT 391 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + F P CP C ++ + K C + + + R Sbjct: 392 PGKE----VFKIPDRCPSCNTQTI-------KKESLVDLFCPNPDCPDRVKNGIIFYCQR 440 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 +IEGLG +Q++F + + I+ AD++ L+ +++ K+ GFG+ SV + Sbjct: 441 KQMDIEGLGDKQIEFLYDHD----YIKSIADLYDLKDQKE----KLMEEEGFGEKSVNII 492 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLS 597 I + + + SLG+ +G ++ L ++ S IA + S Sbjct: 493 LKGIEQSKQKDFRFLLPSLGLSELGHKVTELLIEHGIDSIDEILS-----IAKDQKKIES 547 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTG 656 L+ +P +G QA E + + R + +E L K + + TG Sbjct: 548 LLEIPGIGPSTIQAFQENFSDKRILKLIERLKKAGLKMKADPIQVADQQPFAGQSWCVTG 607 Query: 657 TLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + + R KA + + G + +S KT ++ G GSKLEKA +LGV + +E+QFL Sbjct: 608 SFENFQPRDKAMDLIVYYGGRKVSAVSSKTTHLLAGPGAGSKLEKANELGVSVYDEKQFL 667 Query: 716 FLLQQYNTTLRI 727 LL+ + Sbjct: 668 DLLKSLKIDFKN 679 >gi|167766753|ref|ZP_02438806.1| hypothetical protein CLOSS21_01259 [Clostridium sp. SS2/1] gi|167711507|gb|EDS22086.1| hypothetical protein CLOSS21_01259 [Clostridium sp. SS2/1] Length = 651 Score = 425 bits (1093), Expect = e-116, Method: Composition-based stats. Identities = 190/707 (26%), Positives = 314/707 (44%), Gaps = 65/707 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L ++ YYQ +K ++ + EYD + + + N P + Sbjct: 5 DRMKELIHTLNEAGKAYYQQNKEVMSNLEYDKMYDELLELEKK----TNTVLSNSPTIHV 60 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G E+ +L K H P LSL+K + L ++ L K+DG Sbjct: 61 GYELMTALEKEAHPSPMLSLDKTKEPDQLATWLN------------GQEGILSWKLDGLT 108 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I + YE G+ + A RG+G GE V+ R +P + + +RGE I +DF Sbjct: 109 IVLTYEHGELLKAVTRGNGEVGEVVTNNARVFENVP--RHIAYQGTLVIRGEAIIPYSDF 166 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257 +N+E+ V Y NPRN SG +R+LN R+++F+ + + +E Sbjct: 167 YKMNEEIEDVD-SQYKNPRNLCSGSVRQLNNEITAKRHVHFYAFSVSDVEGMDFDNSFEK 225 Query: 258 L-QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 LGF V +R I + DGLV D + K LG Sbjct: 226 KLDWAASLGFDVVEHIRVTEDT--IRGEIEKFSKKIEQFDLPSDGLVLVYDNLAYGKSLG 283 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ PR I+ K+A++ A T L +I+ RTG++ PVA EPV + G ++ A+LHN Sbjct: 284 RTAKFPRDSIAFKWADETAETTLTEIEWSPSRTGLINPVAIFEPVELEGTTVSRASLHNI 343 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 ++ L + +GD ++V +A +IP++ + + P CP Sbjct: 344 SVMEELQ-----------LGIGDEIVVYKANMIIPQLAENKT-----KSGNIEIPHTCPA 387 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + + CSA++++ HFVSRDA N++GL + L Sbjct: 388 CGGETKIED-----ENGIRTLVCTNEFCSAKKIKSFSHFVSRDAMNVDGLSEATLQKMID 442 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + D+FTL+ ++ +I + GFG+ S NL ++IN + +L FI+S Sbjct: 443 ----VGLLNEIYDLFTLKDHKE----EILELEGFGEKSYQNLINAINDSKQPALANFIYS 494 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +VG A+ + K++ + A D I + +G +IA+A+V ++ Sbjct: 495 LGIPNVGLSNAKLICKHFK---------EDFNAIREADAEDFIAIDQIGPMIAEAMVSYF 545 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGA 675 P N +E LL+ V + E +E K V TG+L R + +E + Q+G Sbjct: 546 HTPHNQKILEQLLQYVQFE-KKEESKTEQILEGKTFVVTGSLDHFDNRKQLKEEIEQMGG 604 Query: 676 VVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQQ 720 V+ +S+KTD +I D SK +KA +L + I++EE FL L+++ Sbjct: 605 KVTGSVSKKTDYLINNDKMSQSSKNKKAMELNIPILSEEDFLDLIRR 651 >gi|317499031|ref|ZP_07957312.1| DNA ligase [Lachnospiraceae bacterium 5_1_63FAA] gi|316893681|gb|EFV15882.1| DNA ligase [Lachnospiraceae bacterium 5_1_63FAA] Length = 651 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 191/707 (27%), Positives = 314/707 (44%), Gaps = 65/707 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L ++ YYQ +K ++ + EYD + + + N P + Sbjct: 5 DRMKELIHTLNEAGKAYYQQNKEVMSNLEYDKMYDELLELEKK----TNTVLSNSPTIHV 60 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G E+ L K H P LSL+K + L ++ L K+DG Sbjct: 61 GYELMTVLEKEAHPSPMLSLDKTKEPDQLATWLN------------GQEGILSWKLDGLT 108 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I + YE GK + A RG+G GE V+ R +P + + +RGE I +DF Sbjct: 109 IVLTYEHGKLLKAVTRGNGEVGEVVTNNARVFENVP--RRIAYQGTLVIRGEAIIPYSDF 166 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257 +N+E+ V Y NPRN SG +R+LN R+++F+ + + +E Sbjct: 167 YKMNEEIEDVD-SQYKNPRNLCSGSVRQLNNEITAKRHVHFYAFSVSDVEGMDFDNSFEK 225 Query: 258 L-QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + LGF V +R I + DGLV D+ + K LG Sbjct: 226 KLDWVASLGFDVVEHIRVTEDT--IRGEIEKFSKKIEQFDLPSDGLVLVYDDLAYGKSLG 283 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ PR I+ K+A++ A T L +I+ RTG++ PVA EPV + G ++ A+LHN Sbjct: 284 RTAKFPRDSIAFKWADETAETTLTEIEWSPSRTGLINPVAIFEPVELEGTTVSRASLHNI 343 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 ++ L + +GD ++V +A +IP++ + + P CP Sbjct: 344 SVMEELQ-----------LGIGDEIVVYKANMIIPQLAENKT-----KSGNIEIPHTCPA 387 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + + CSA++++ HFVSRDA N++GL + L Sbjct: 388 CGGETKIED-----ENGIRTLVCTNEFCSAKKIKSFSHFVSRDAMNVDGLSEATLQKMID 442 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + D+FTL+ ++ +I + GFG+ S NL ++IN + +L FI+S Sbjct: 443 ----VGLLNEIYDLFTLKDHKE----EILELEGFGEKSYQNLINAINDSKQPALANFIYS 494 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +VG A+ + K++ + A D I + +G +IA+A+V ++ Sbjct: 495 LGIPNVGLSNAKLICKHFK---------EDFNAIREADAEDFIAIDQIGPMIAEAMVSYF 545 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGA 675 P N +E LL+ V + E +E K V TG+L R + +E + Q+G Sbjct: 546 HTPHNQKILEQLLQYVQFE-KKEESKTEQILEGKTFVVTGSLDHFDNRKQLKEEIEQMGG 604 Query: 676 VVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQQ 720 V+ +S+KTD +I D SK +KA +L + I++EE FL L+ + Sbjct: 605 KVTGSVSKKTDYLINNDKMSQSSKNKKAMELNIPILSEEDFLNLIGR 651 >gi|160940658|ref|ZP_02088001.1| hypothetical protein CLOBOL_05552 [Clostridium bolteae ATCC BAA-613] gi|158436393|gb|EDP14160.1| hypothetical protein CLOBOL_05552 [Clostridium bolteae ATCC BAA-613] Length = 699 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 183/729 (25%), Positives = 304/729 (41%), Gaps = 64/729 (8%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 MK+ Q E LS E + L ++++ + YY + P + D+ YD L DA+ Sbjct: 25 MKQNQN---EHLSQEAI--RIHHLVKQLNQYRHEYYNMNAPSVSDAVYDCLFDELDALEK 79 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 N P +G + L KV H IP LSL+K I ++ F+ + Sbjct: 80 R----TGIILSNSPTQTVGYQAVSQLDKVHHPIPLLSLDKTKQITEIHDFMKKQKSLL-- 133 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 K+DG I + YE G+ + A+ RGDG GE V+ A IP LS+ Sbjct: 134 ----------MLKLDGLTIKLTYENGRLIEASTRGDGDEGEIVTHNASAFRNIP--LSIP 181 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NF 238 + + + GE +I +DF L + ++ PY N RN A+G R L+ + Sbjct: 182 YQKRLVISGEAFIHIHDFERLQNTLLDSNGNPYRNARNLAAGSARCLDANICKERSVSFY 241 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL--- 295 H L E + + + + + NE + L Sbjct: 242 AFHVLEGLDESSELSKSREARLTALHPLGFDICPFLVLSSEASLETLNEAMATLRDLASE 301 Query: 296 -PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 IDGLV + D+ G R + + KF + T I+ Q GRTG + P Sbjct: 302 LDIPIDGLVLRYDDLPYSVACGRTGRFYKDGKAFKFEDDTFKTIFRSIEWQTGRTGEIAP 361 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VA +P+ I G+ ++ A+LHN +I+ L+ + G R+LV + +IP + Sbjct: 362 VALFDPIEIDGSTVSRASLHNLTFIQDLE-----------LYPGCRILVSKRNMIIPHIE 410 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 + + + D P CP C S + + CS Q L+R H Sbjct: 411 ENLDRGHYQDM----TPRTCPCCGSPTRIYSRSSGSERIVQTLHCDNPNCSQQILQRFVH 466 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 F + A NI G+ + L F ++ DI+ L R + +I ++ GFG S Sbjct: 467 FCEKKAMNIIGISEATLKQFID----LGFLKCFQDIYHLDRF----SDQIADMDGFGKKS 518 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNND 593 L++SIN+ RN + R++ ++ I +G +R L +Y+ + Sbjct: 519 YERLWNSINESRNTTFVRYLVAMDIPMIGRTASRKLEQYFHGNLLELELA--------AM 570 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE---KNVSSEIENK 650 + G+ ++ I+E++ + N+ L KE+ + ++ Sbjct: 571 SRFDFTCLEDFGETMSSNIIEWFHDRENLTLWRNLQKEMHFKEREETIMTETKNNPFAGC 630 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TG L+ R + LGA + +++KTD +I G+ GSKL KAQQLGVK+++ Sbjct: 631 TIVATGKLENFTRDSINSKIISLGATAGSSVTKKTDYLICGEKAGSKLAKAQQLGVKVLS 690 Query: 711 EEQFLFLLQ 719 E++FL ++ Sbjct: 691 EQEFLNMIA 699 >gi|118474676|ref|YP_892270.1| NAD-dependent DNA ligase LigA [Campylobacter fetus subsp. fetus 82-40] gi|166215570|sp|A0RPY7|DNLJ_CAMFF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|118413902|gb|ABK82322.1| DNA ligase, NAD-dependent [Campylobacter fetus subsp. fetus 82-40] Length = 645 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 210/701 (29%), Positives = 339/701 (48%), Gaps = 60/701 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + ++ YY P+ D EYD L PDL S P N+ Sbjct: 3 KNDYLKAVDSLNLWAKAYYTDDSPMASDDEYDKLYNAVVQFEKENPDLKLSY---SPTNR 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 IGGE+ K++H S+E I++ +L +I+R D F EPK DG Sbjct: 60 IGGEILDEFKKISHIEKMWSMEDIFSDSELVAWISR-------GDKTDCEFFAEPKFDGA 112 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G + AA RGDG GEDV+ + I ++P L ++ + IE+RGEV I+K+D Sbjct: 113 SLNLLYENGNLISAATRGDGSVGEDVTNNAKVISSVP--LQIDYKDKIEIRGEVVITKDD 170 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N E P ANPRNAA+G LR+L+ R L F+ G+G + + + Sbjct: 171 FELINIERSKNSEPPLANPRNAAAGSLRQLDNGIVKQRKLKFYPWGVG-ENSLKFNKHSQ 229 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++ +R LGF +N + + Y E+ S+R P +DG+V +V++ S QLG Sbjct: 230 IMDFVRSLGFLHDNFCKVIRGIDELKIAYKELLSVRELKPILMDGMVIRVNDLSKANQLG 289 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + P++M+++KF + + RL+DI +Q+GRTG++TPV L+ V I GA I N TLHN Sbjct: 290 YTVKFPKFMVAYKFPATEKTARLIDILLQVGRTGVVTPVGLLDGVLIDGAFIKNVTLHNF 349 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I L ++ D V V R+G+VIPK+ + + R P CP Sbjct: 350 DEIDRL-----------NLMKNDFVTVIRSGDVIPKITGVFKDRRDGSQSEIIRPKICPK 398 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + ++ + L C A+ + + +F S+ NI+GLG ++ ++ Sbjct: 399 CGNELLDEG---------VFIKCQNLTCKARVVSSIIYFASKKCMNIDGLGDAIVELLYQ 449 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ ADI+ L + GF ++NL +IN + +L++FI S Sbjct: 450 KN----IIKDIADIYRLDE------LSFIGLEGFKTKKISNLLSAINNSKTPNLDKFIAS 499 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI H+G A+ +A Y + G+ +A + +EF Sbjct: 500 LGIEHIGEVAAKKIANNYGDRWLELTLEELLAL------------DGFGEAMALSYLEFM 547 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + N+ ++ LL+ ++P + E + K +V TGTL + R + + + GA Sbjct: 548 RV--NLEKIKELLEFITPKMQNLELKTN-IFSGKTVVITGTLSR-SRDEFKAELESYGAK 603 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 VS+ +S+KTD ++ G+ GSKLEKA +LGV+ ++E ++ L Sbjct: 604 VSSSVSKKTDFVLYGNEAGSKLEKANELGVRAIDESEYESL 644 >gi|15894478|ref|NP_347827.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum ATCC 824] gi|81530636|sp|Q97JS8|DNLJ1_CLOAB RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 1 gi|15024117|gb|AAK79167.1|AE007633_11 DNA ligase (NAD dependent), LigA [Clostridium acetobutylicum ATCC 824] gi|325508609|gb|ADZ20245.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum EA 2018] Length = 663 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 194/707 (27%), Positives = 341/707 (48%), Gaps = 54/707 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K + L ++++ + YY PI+ D EYD + + +PN P ++ Sbjct: 2 KLIEDLIEKLNKYSYSYYVLDNPIVADKEYDIMYDELKRLEEE----TEYINPNSPTQRV 57 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNSIFFTLEP 132 G + K H SL+K ++++ F+ + +F ++ + S F + Sbjct: 58 GDIILDKFEKTHHKNKLWSLDKAQKKDEVKAFVNKCVKFVEQYNLTHSEKLPSPQFVVTQ 117 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG I Y + + + +A RG G GED++ + I +P +N I+V GE Sbjct: 118 KLDGLTINCSYNESRLIKSATRGTGEIGEDITEQSKTILNLPNA--INYSGEIDVHGEAL 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 ++KN N + V P N RN A+G LR LN + R ++ K Sbjct: 176 MTKNALEQYNSNL-KVNETPLKNLRNGAAGALRNLNIKETARRKLVAQFYDLSYTDKKLK 234 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 E+L ++ GF + N F I + + +RS+L YDIDG+V ++++ Sbjct: 235 KYSEILLFLKSQGFNITEYN-ICNNFDEINQAIDNIGEVRSSLQYDIDGVVIRLNDIETS 293 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + +G + P++ I++KF K+ +T+L+D++ +GR+G + P A LEPV + G ++ AT Sbjct: 294 RLMGYTIKCPKYAIAYKFKAKETTTKLIDVEWNVGRSGRINPTAILEPVELAGVIVKRAT 353 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 L+N D IK G RV ++R+ +VIP+++ + + P+ Sbjct: 354 LNNMDDIKRKKIK-----------KGARVFLRRSNDVIPEIMGVTEETEGETKEI-EAPT 401 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S +V++ C L+C Q ++ + HF SR A NIEG ++ + Sbjct: 402 ICPYCGSEIVKE--------GVHLFCENTLSCKPQMVKSIVHFASRKAMNIEGFSEKTAE 453 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F+ +I+ +D++ + + + S + F D +NL ++I K + L+ Sbjct: 454 QLFEK----LNIKSISDLYRITKEELMS------LDKFKDKKASNLINAIEKSKECDLDS 503 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F++SLGI +VG + A L K + S++N + + LI V +G I+A++I Sbjct: 504 FVYSLGIPNVGKKTATDLCKQFKSFENIKKA----------SYFELILVQDIGSIVAKSI 553 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 V+F++ + ++ L K + S +K +V TG+LQ R + +E + Sbjct: 554 VDFFKQEKIEKSLNELFKLGVKPSYEESEVSESVFNDKTVVATGSLQNYSRTEIKEKLES 613 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA V+ +S+KTD +I G+N GSK +KA LGVKI+ EE+F L++ Sbjct: 614 LGAKVAGSVSKKTDYVIAGENAGSKYDKAVALGVKILTEEKFEELIE 660 >gi|325846528|ref|ZP_08169443.1| DNA ligase (NAD+) [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481286|gb|EGC84327.1| DNA ligase (NAD+) [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 668 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 186/708 (26%), Positives = 334/708 (47%), Gaps = 56/708 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + ++ L +I+ + YY +P++ D EYD L + ++ + P + Sbjct: 6 KIKIDELIDKINELNYHYYTLDEPMVSDGEYDKLYDELRELENS----TGYINAFSPTQR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLE 131 +GG + K H S +K NI+ L+ +I R + + ++ + F E Sbjct: 62 VGGTILDKFEKHFHITRLYSQDKSQNIDQLKDWIIRTKKLRDQYNNSHDDKLEKLEFLTE 121 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG I + YE G A+ RG+G GEDV+ + IPTIP + ++E++GE Sbjct: 122 YKFDGLTINLTYENGLLKTASTRGNGIVGEDVTKQVLTIPTIPTKIKE--KSLLEIQGEA 179 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 + + N+E P N RNAA+G +R L+ + + T+ + Sbjct: 180 VMPLSSLKKYNEE----NEIPLKNARNAAAGAIRNLDTSQTRKRNLKAYFYQISTNSLDF 235 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 K + + L + PV + F IV + +K R + DG+V KV++ Sbjct: 236 KTEEDKLNFLEEQKLPVYPYKKLIKNFDEIVKEIDYIKEERHHIDVLTDGVVIKVNDVKT 295 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+ LG + PRW I++K+ ++ +T+LLD+ +GRTG +TP A LEPV+ G + A Sbjct: 296 QEVLGYTNKFPRWSIAYKYDPEEYTTKLLDVVWNVGRTGKVTPSAILEPVDFSGVTVQRA 355 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TL+N D I + +++G +V ++R+ +VIP+++ ++ + P Sbjct: 356 TLNNYDDI-----------LRKKVKIGSQVFIRRSNDVIPEILGVVDEN-QENTVEIKKP 403 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C S + + C ++C+ Q R+ HF SRDA +IEGL ++ + Sbjct: 404 TKCPYCHSEL--------IEGNVHIYCPNSISCTPQLKARMVHFASRDAMDIEGLSEKTV 455 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F D I+ D++ L+ + F + NL +I + L Sbjct: 456 ELFINELD----IKEIYDLYDLKYEDLID------LESFKEKKTNNLLQAIENSKECDLN 505 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 FI+++GI +VG + AR LA+ Y S +N L+ V +G+ + Sbjct: 506 HFIYAIGIPNVGVKTARDLAEKYKSLENLRNAKE----------DDLVEVEDIGEKTSHD 555 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 IVEF+ + +++ LL++ E VS+ +E K+V TG+++ +R+ ++ + Sbjct: 556 IVEFFNDKNIKESIDKLLEKGIKIKEIEESEVSNFLEGMKIVITGSIENYKRNDIKKLIL 615 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V++ +S+ TD+++ G+ PGSK EKA QLG+K++ E+ ++ Sbjct: 616 DHNGDVTSSVSKNTDLVLCGEKPGSKKEKADQLGIKVLENEELFEFIK 663 >gi|167769644|ref|ZP_02441697.1| hypothetical protein ANACOL_00978 [Anaerotruncus colihominis DSM 17241] gi|167668005|gb|EDS12135.1| hypothetical protein ANACOL_00978 [Anaerotruncus colihominis DSM 17241] Length = 674 Score = 423 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 171/711 (24%), Positives = 292/711 (41%), Gaps = 59/711 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++ L ++ + D YY + P + D YD L + + N P + Sbjct: 7 EKQRELNDRLNRYRDEYYNRNAPSVSDEVYDRLFDELKELEQE----TGIQMANSPTQTV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G L K H IP LSL+K + DL F+ L K+DG Sbjct: 63 GYPAVSRLEKTRHEIPLLSLDKTKSSMDLLNFM------------GEQQVMLMLKLDGLT 110 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + + YE G+ + AA RGDG GE ++ RAI IP + E + V GE +I +DF Sbjct: 111 VKLTYENGELLEAATRGDGDEGEIITHNTRAISGIP--SHITYKERLVVTGEGFIRPSDF 168 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAKGQYEM 257 L + KPY N RN A+G +R ++ F G+ + + ++ Sbjct: 169 EELKTSLQDSSGKPYKNGRNLAAGSIRLMDAKTCQERRLVFMPFGVLEGFPHLTRKSDKL 228 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEM-KSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + P V + V + + IDG+V ++ + + G Sbjct: 229 RELRALGFQPCKYLVTKQKLTLENVEAGIYQLRQYATDKDIPIDGIVVSFNDIAYAQSCG 288 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + +++KF + + L I+ GRTG + PVA PV I G ++ A+LHN Sbjct: 289 RTGHHYKDGLAYKFEDDLHESLLQYIEWTPGRTGEIAPVAVFTPVEIDGCEVSRASLHNL 348 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 +I+ L+ + G+R+LV + +IP V + +R + + P CP Sbjct: 349 SFIEDLE-----------LMAGNRILVSKRNMIIPHVEEN--LDRGGFSMADTIPHVCPC 395 Query: 437 CQSRVVRDL----NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 C K+ + C ++L++ HFVS+ A IEGL + L+ Sbjct: 396 CGQPTRIHESSGKGEKSEDRIIKTLYCDNPDCETRRLKKFVHFVSQKAMEIEGLSEATLE 455 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F I DI+ L R + +I + GFG+ S L+D+I + RN + ER Sbjct: 456 KFIGQ----GFIHSYLDIYRLDRYRA----EIVRMDGFGEKSWQRLWDAIQQSRNTTFER 507 Query: 553 FIFSLGIRHVGAEIARSLAKYYL-SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 ++ S+ I +G ++ L + + F + ++P G+ + Sbjct: 508 YLISMDIPMIGNTASKVLGRVFHYDLDEFRDAVYGGY--------DFRQLPDFGETLHNN 559 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKA 666 I +++ N C E L ++ + + K +V TG ++ R Sbjct: 560 IHDWFCVEDNFCIWEELQTMMNIQKPAVAEHSEDRVQDNPFVGKTIVVTGKVEPYTRDGI 619 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + + LGA + +S+KTD ++ G+N GSKL KA+ LGV +++ +F + Sbjct: 620 NDLIESLGAHAGSSVSKKTDYLVCGENAGSKLSKARDLGVTVLSPAEFFSM 670 >gi|291522304|emb|CBK80597.1| DNA ligase, NAD-dependent [Coprococcus catus GD/7] Length = 653 Score = 422 bits (1085), Expect = e-115, Method: Composition-based stats. Identities = 179/708 (25%), Positives = 310/708 (43%), Gaps = 65/708 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + L ++ YY ++ + EYDAL + N P Sbjct: 5 ADRIKELTGILNRASKAYYMQDTELMSNYEYDALYDELVQLEKE----TGITLSNSPTIH 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G E+ L K H P LSL+K +++ L ++ L K+DG Sbjct: 61 VGYEVLSELPKEEHEYPMLSLDKTKDVQVLADWL------------GDQTGVLSWKMDGL 108 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I + Y+ G+ V A RG+G+ GE ++ R +P + + +RGE I +D Sbjct: 109 TIVLTYDNGELVKAVTRGNGYVGEVITNNARVFKNVPHR--ITFKGKLTLRGEAVIKYSD 166 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQY 255 F ALN I Y NPRN SG +R+LN F + F + Sbjct: 167 FNALNS-QIEDSEAKYKNPRNLCSGSVRQLNNAVTAERNVYFFAFTLVVAEGMDFYNSRM 225 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + + + GF V + +Y + + + DGLV +++ + + L Sbjct: 226 QQFEWLSSQGFDVVEH--VLVDRENLPTYVAQFADRIADNDFPSDGLVLILEDIAYGESL 283 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+ PR I+ K+A++ TRLLD++ RTG++ P+A EPV + G ++ A+LHN Sbjct: 284 GTTAKFPRNAIAFKWADEIRETRLLDVEWSASRTGLINPIAVFEPVELEGTTVSRASLHN 343 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 ++ L + GD + V +A +IP++ + + + P CP Sbjct: 344 ISILRALQ-----------LGKGDVIQVYKANMIIPQIAENLTR-----SDALEIPKKCP 387 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C + C A+ ++R FVSRDAFNIEG+ + L+ F Sbjct: 388 VCGKPT-----EVRCVNDVSSLYCVNEECPAKHVKRFLLFVSRDAFNIEGMSEATLEKFI 442 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 +S +R PAD+F L I + GFG+ S L SI K R ++L + I+ Sbjct: 443 QS----GFLREPADMFHLDSY----HDVIVEMDGFGEKSYQRLMASIQKARKVTLAKLIY 494 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 SLGI ++G AR L ++Y + ++ A L + +G +IA + ++ Sbjct: 495 SLGILNIGLSNARLLCQHYRN---------DLQAMLAASTEELTAIDGIGPVIAGSFTDY 545 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLG 674 + + ++ ++ LL EV + + K V TG+L+ + R+ + + + G Sbjct: 546 FADEQHRIELKDLLGEVEIEQENFSEE-GRVFDGKVFVITGSLEHFKNRNNLKALLEEKG 604 Query: 675 AVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A V+ +S KT +I D + SK ++A++LGV ++ EE+ + ++++ Sbjct: 605 AKVAGSVSSKTSYLINNDSTSASSKNKRARELGVPVITEEELIDMMKK 652 >gi|269957188|ref|YP_003326977.1| DNA ligase, NAD-dependent [Xylanimonas cellulosilytica DSM 15894] gi|269305869|gb|ACZ31419.1| DNA ligase, NAD-dependent [Xylanimonas cellulosilytica DSM 15894] Length = 830 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 192/823 (23%), Positives = 323/823 (39%), Gaps = 137/823 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 L + A++ + L + YY++ P++ D+EYDA A+ A P LA Sbjct: 10 ELDEQAAQRRWAELRDLVEADQRAYYEHDSPLVSDAEYDARLHELAALEAAHPALA---T 66 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P P ++GG V H LSL+ ++++++LR + R+ R + + Sbjct: 67 PESPTQRVGGAAASGFTTVEHVERMLSLDNVFSVDELRDWDARVARDLGA---GDVGYLA 123 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189 E KIDG I + YE G+ AA RGDG +GEDV+ I +P+ L P ++EVRG Sbjct: 124 EVKIDGLAIALLYEHGRLTRAATRGDGRTGEDVTVNALRIADVPQQLDGEGHPALVEVRG 183 Query: 190 EVYISKNDFLALNDEMIA---------------------------VGRKPYANPRNAASG 222 E++I F LN+ +ANPRNAA+G Sbjct: 184 EIFIPTASFTRLNELQEELRARVVEDTRARQGARFDEEKARLAALRRFPTFANPRNAAAG 243 Query: 223 ILRRLNPTD----------ITRYLNFFVHGLGKTSEIFAKG-----QYEMLQKMRCLGFP 267 LR+ L +VHG+G + Q + G P Sbjct: 244 GLRQQLDKKDGLERDAGLARIESLRLYVHGIGALQWEAGEHAELGRQSDAYSYFATWGLP 303 Query: 268 VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327 V+ R N ++ + R + +++DG+V KVD Q++LG +R+PRW I+ Sbjct: 304 VSPHNRVVNGIDAVIEMIEHFGAHRHDIEHELDGIVVKVDALPDQQRLGATSRAPRWAIA 363 Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387 +K+ ++ +TRLL I + +GRTG TP A +EPV + G+ + ATLHN+D ++ Sbjct: 364 YKYPPEEVNTRLLAIQVGVGRTGRATPYAVMEPVLVAGSTVRQATLHNQDVVR------- 416 Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD--AQPFSFPSFCPICQSRVVRDL 445 + +RVGD V++++AG+VIP+++ + F P+ CP C + + Sbjct: 417 ----AKGVRVGDVVVLRKAGDVIPEILGPVPAAADDGFPRHDFVMPAQCPECGTPLRPM- 471 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF--- 502 + RC +C AQ R++H SR ++EGLG+ + +PA Sbjct: 472 ----KEGDVDLRCPNARSCPAQVRGRVEHIGSRGGLDVEGLGEVAAAALTQPLEPADPPL 527 Query: 503 -------------------SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +R P + ++ G + Sbjct: 528 DTEAGLFSLTIEELLPIRVVVRDPETGLPRPYDGVGESAELPTADGATFTAKVVRPFQRL 587 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL--IRV 601 R A I + Y + A D W L + + Sbjct: 588 VER-TYPPGTETMTPAERRKAGIRKDHPVYGPAKSAQVLLDELDRAKTKDLWRQLVSLNI 646 Query: 602 PLVGDIIAQAIVE--------------------------------FYQNPRNICAVEALL 629 VG + A+A+ + ++ ++ V++ Sbjct: 647 RHVGPVAARALADWFGSLDAIRAASSEELAAVEGVGPVIGAELQAWFDVDWHVDIVDSWT 706 Query: 630 KEVSPSIGR-------------HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + +V TG+L R A+E + G Sbjct: 707 RAGVRFATPGHPGPEAMAAQAAAGAAPQGPLAGLTVVVTGSLDGFTRDGAKEAIIAAGGK 766 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + +S+KTD ++VG+N GSK KA++LG+ +++E F+ LL Sbjct: 767 SAGSVSKKTDYVVVGENAGSKAAKAEELGLPVLDEAGFVALLD 809 >gi|229591993|ref|YP_002874112.1| NAD-dependent DNA ligase LigA [Pseudomonas fluorescens SBW25] gi|254781395|sp|C3JXX6|DNLJ_PSEFS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|229363859|emb|CAY51325.1| DNA ligase [Pseudomonas fluorescens SBW25] Length = 785 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 213/631 (33%), Positives = 333/631 (52%), Gaps = 51/631 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + A + L E+ H+ Y+ +P I D+EYD L A+ PDL + Sbjct: 1 MTAAHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPDLVTR---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127 P ++G + +V H IP LSL ++ + +F R+ ++ Sbjct: 58 PTQRVGSAALSAFTQVKHDIPMLSLGNAFDETTMLEFDRRVTEGLDLPVGDLFGGGAAVE 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++ Y+ G+ V A RGDG +GED+S IR + IP L + P +E Sbjct: 118 YSCEPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNIRTVRNIPLKLHGSGWPATLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV++SK F LN + VG K +ANPRNAA+G LR+L+ +R L F +G+ Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGV-- 235 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + + LQ+++ G P+++ ++ A + YY ++ R++LPY+IDG+V+K Sbjct: 236 -TTDISDTHIGNLQQLKKWGMPISHELKLAKGIQDCLDYYRDIGERRNSLPYEIDGVVFK 294 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G Sbjct: 295 VNSIASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 354 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++NATLHN D + L + +GD V+++RAG+VIP+VV ++ R +A Sbjct: 355 VTVSNATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVSVVPERRPENA 403 Query: 426 QPFSFPSFCPICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 + P CP+C S V R +T A +RC G LAC AQ + + HFVSR Sbjct: 404 RAVQIPESCPVCGSHVERTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRR 463 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +I+GLG + ++ + I PAD++TL+ Q + GF D+S L Sbjct: 464 AMDIDGLGDKTIEQLVDEK----LIGSPADLYTLKYEQIID------LEGFADISSKKLI 513 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I + +L RFI++LGI VG E A+ LA+ S + + + + L Sbjct: 514 TAIENSKTPTLARFIYALGIPDVGEETAKVLARSLASLERVQKALPEV----------LT 563 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 +P VG +A I F+++ N + ALL Sbjct: 564 YLPDVGLEVAHEIHSFFEDSHNQDVIGALLS 594 Score = 166 bits (419), Expect = 2e-38, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 105/254 (41%), Gaps = 18/254 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R ++E + K + D + F Q + + G Sbjct: 543 VLARSLASLERVQKALPEVLTYLPDVGLEVAHEIHSFFEDSHNQDVIGALLSPQACGLQL 602 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 S + +L + L + VG A+ LA +++ + + D Sbjct: 603 QDQGELSAEFAASTTLGGLLDKLHVPSVGPGAAQKLADKFVTLEGVIKA----------D 652 Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649 WL + +P + A+A+ EF+ N N A+E LK+ +K V Sbjct: 653 WLDMRQALP---EKQAKAVREFFDNADNANHALAIEQQLKDFGMHWDSEKKVVEGLPEAG 709 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 V TG+L+ + R A++ + LGA V+ +S KT ++ G GSKL KA +LG+K++ Sbjct: 710 HTWVLTGSLELMSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGLKVL 769 Query: 710 NEEQFLFLLQQYNT 723 +EE F+ L ++N Sbjct: 770 DEEAFVAFLAKHNI 783 >gi|166030629|ref|ZP_02233458.1| hypothetical protein DORFOR_00295 [Dorea formicigenerans ATCC 27755] gi|166029631|gb|EDR48388.1| hypothetical protein DORFOR_00295 [Dorea formicigenerans ATCC 27755] Length = 647 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 172/707 (24%), Positives = 312/707 (44%), Gaps = 65/707 (9%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L + ++ YYQ ++ I+ + EYD L + N P ++G Sbjct: 1 MKELVELLNKASKAYYQDAEEIMSNYEYDKLYDELQELERE----LGITLSNSPTVRVGY 56 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 E+ L K H P LSL+K ++E+L+ F+ + K+DG I Sbjct: 57 EVVSELPKERHESPMLSLDKTKDVEELKNFV------------GDQKALMSWKMDGLTIV 104 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + Y G A RG+G GE ++ + +P L ++ + +RGE I DF Sbjct: 105 LTYRGGHLFKAVTRGNGEVGEVITNNAKVFKNVP--LQISYQGELILRGEAVIGYKDFEK 162 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259 +N+ I Y NPRN SG +R+LN R + F+ L ++ Sbjct: 163 INE-QIQEAEAKYKNPRNLCSGSVRQLNSEITAKRNVKFYAFTLVSAKDVDFHNSRACQM 221 Query: 260 -KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ GF V + + + + DGLV D+ + + LG Sbjct: 222 EWLKEQGFEVVEYHEVIRDTVE--AEVIKFSEKIAENDFPSDGLVLVYDDIAYGRSLGRT 279 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++ PR + K+A++ T+LL+I+ RTG++ PVA EPV + G ++ A++HN Sbjct: 280 SKFPRDSFAFKWADEIRQTKLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRASVHNISI 339 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 ++ L+ + VGD + V +A +IP++ + D P CP+C Sbjct: 340 MEELE-----------LGVGDEIEVYKANMIIPQIAQNLTRSGVKD-----IPKVCPVCG 383 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 + A C A+ ++ F SRDA NIEGL + L+ F Sbjct: 384 GKT-----EIRQVSNAKALYCTNPECQAKHVKAFALFASRDALNIEGLSEATLEKFIDR- 437 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I+ DIF L + Q+ +I+ + GFG+ S NL ++ K + +L + I++LG Sbjct: 438 ---GFIKEFTDIFHLDKWQE----EIQTMEGFGEKSYKNLIANVEKAKVTTLPKVIYALG 490 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I +G A+ + + + ++ + L + VG+++A A V ++Q+ Sbjct: 491 IPGIGLANAKVICREF---------SGDVDRMIHATAEELAEIQGVGEVLAGAFVTYFQD 541 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVV 677 +++ +++ L+ E+ ++ V TG+++ R + +E + LG V Sbjct: 542 EKHVESLKRLIAELEIPKEEESESQ-QIFAGVNFVITGSVEHFANRGEVKELIESLGGKV 600 Query: 678 SAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + ++ KT+ +I D + SK +KA +LGV I++EEQF+ ++++ Sbjct: 601 TGSVTSKTNYLINNDVTSTSSKNKKANELGVPIISEEQFIKMVEEQK 647 >gi|195938757|ref|ZP_03084139.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. EC4024] Length = 556 Score = 421 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 215/591 (36%), Positives = 338/591 (57%), Gaps = 43/591 (7%) Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 1 MDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 60 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 61 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 120 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 121 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 180 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 181 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 240 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 241 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 289 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P++CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 290 PTYCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 343 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 344 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 393 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 394 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 443 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + LL E I + + + S K +V TG+L ++ R A+ Sbjct: 444 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 503 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 504 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 554 >gi|288958932|ref|YP_003449273.1| DNA ligase (NAD+) [Azospirillum sp. B510] gi|288911240|dbj|BAI72729.1| DNA ligase (NAD+) [Azospirillum sp. B510] Length = 788 Score = 421 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 259/626 (41%), Positives = 387/626 (61%), Gaps = 32/626 (5%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 + I ++AL+ EQA +L++L EI++HD Y+Q +P I D++YDAL RR AI FP Sbjct: 11 PRSIAVDALTPEQAAADLAALAAEIAHHDRLYHQQDQPEITDADYDALVRRNLAIEARFP 70 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 +L R+ + P ++G KV H+IP LSL + ED+ +F R+ RF DD Sbjct: 71 ELRRA---DSPSLRVGAAPAAGFGKVRHAIPMLSLGNAFAPEDVAEFDARVRRFLGLADD 127 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 + F EPKIDG ++RY+KG+ V AA RGDG GE+V+A +R I +P L PE Sbjct: 128 APLTFVAEPKIDGLSCSLRYQKGELVLAATRGDGAEGENVTANVRTIRDVPHRLPAPFPE 187 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 ++EVRGEVY+S++DFLA+N G + +ANPRNAA+G LR+L+ +R L FF + Sbjct: 188 VLEVRGEVYMSRDDFLAMNAARAEKGEQLFANPRNAAAGSLRQLDSAITASRPLCFFGYA 247 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 LG+ SE A+ Q+ + ++++ GF +N + +++YY + +R+ LP+DIDG+ Sbjct: 248 LGEASEPIAETQWGIRERLKGWGFQLNRPAELCDGKDKLLAYYEGIGRLRAGLPFDIDGV 307 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 VYKVD LQ++LG +R+PRW I+HKF +QA TRL I IQ+GRTG LTPVA L+ + Sbjct: 308 VYKVDSLELQQRLGFVSRAPRWAIAHKFPAEQAQTRLKAITIQVGRTGALTPVAELDDIT 367 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 +GG +++ ATLHNED I +DIRVGD V+V+RAG+VIP+VV++++++R Sbjct: 368 VGGVVVSRATLHNEDEIAR-----------KDIRVGDLVVVQRAGDVIPQVVEVVLSQRP 416 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 D+ P+ CP+C S +R+ RCTGGL C+AQ ERL+HFVSRDAF+ Sbjct: 417 ADSVPYVPVETCPVCGSLAIREAGE------VVRRCTGGLICAAQAKERLRHFVSRDAFD 470 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEGLG++ ++ F+ I+ P DIFTL+ R ++ G+ + SV NL+ +I Sbjct: 471 IEGLGEKIIEEFWDE----GFIKSPVDIFTLEDR-----VELIGRPGWKEKSVENLFKAI 521 Query: 543 NKRRN-ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII-AHNNDDWLSLIR 600 N+RR+ I L R IF+LGIRHVG A+SLA++Y + + + + A +W L Sbjct: 522 NQRRDGIELHRVIFALGIRHVGEVTAKSLARHYRTMRGWVDGMRAAERAMPGQEWRDLHA 581 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVE 626 + VG + A I+ ++ +P + ++ Sbjct: 582 LNGVGPVTADTILAWFADPESAAKLD 607 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 59/175 (33%), Positives = 94/175 (53%), Gaps = 1/175 (0%) Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA-HNNDDWLSLIRVPL 603 + LE I SLGI+ + A++LA Y + ++ + +A WL L+ P Sbjct: 612 SEALRLETIIGSLGIKRLNTRAAQALATRYGNLSDWRAAMERAVAQAPGQPWLDLVATPD 671 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 VG++ A+ + F+ RN VEAL + K +S I K +VFTGTL+++ R Sbjct: 672 VGEVAAEELAGFFAEERNRLIVEALAGRLIVLEAAVPKAGNSPIAGKTVVFTGTLERMTR 731 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+ LGA V+ +S KTD ++ G + GSK KA+ LGV+I+ EE++L + Sbjct: 732 SEAKARAESLGAKVAGSVSGKTDYLVAGADAGSKAAKAKDLGVEILTEEEWLAKI 786 >gi|160881055|ref|YP_001560023.1| DNA ligase, NAD-dependent [Clostridium phytofermentans ISDg] gi|190359247|sp|A9KPL0|DNLJ_CLOPH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|160429721|gb|ABX43284.1| DNA ligase, NAD-dependent [Clostridium phytofermentans ISDg] Length = 653 Score = 421 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 191/712 (26%), Positives = 324/712 (45%), Gaps = 65/712 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++ ++ L + + Y Q + I+ + EYD L + Sbjct: 1 MQGKKQRITQLTELLDEAARVYEQEDREIMSNFEYDKLYDELKKLEEE----TGIVLAGS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+G E+ L K H LSL+K + L ++ + L K Sbjct: 57 PTRKVGYEILSELPKERHESAMLSLDKTKEVPALIDWL------------GNKEGILSWK 104 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG I + Y G+ V A RG+G GE V+ + +P L++ + +RGE I Sbjct: 105 MDGLTIVLTYRNGELVKAVTRGNGEVGEVVTNNAKVFKNLP--LTIPYEGELIIRGEAVI 162 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSEIFA 251 +DF +N I Y NPRN SG +R+LN R +NFF L Sbjct: 163 RYSDFEMINA-QIPDADAKYKNPRNLCSGSVRQLNNAITAKRNVNFFAFALIRMDEMNRF 221 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 K E ++ LGF V + T + +S T + DGLV ++ + Sbjct: 222 KTMMEQFNWLKELGFDVVE--EKLVTAENMAETMEYFESHIITNDFPSDGLVLFFNDIAY 279 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 + LG ++ PR I+ K+ ++ T L +I+ RTG++ PVA EPV + G ++ A Sbjct: 280 GESLGRTSKFPRNGIAFKWRDEIKETTLQEIEWSASRTGLINPVAIFEPVELEGTTVSRA 339 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHN ++GL+ + +GD+V V +A +IP++ D + + P Sbjct: 340 SLHNISIMEGLE-----------LGLGDKVTVYKANMIIPQIADNLTR-----SGHLPIP 383 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C + + C A++++ HFVSRDA NIEGL + + Sbjct: 384 KTCPVCGGDTMIKQD-----SDVKSLYCMNPECLAKKIKSFTHFVSRDAMNIEGLSEATI 438 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + I+ ADIF ++ ++ +I + GFG+ S NL DS+ K R L Sbjct: 439 EKLIAK----GLIKELADIFHVKDFKE----EITTMEGFGEKSFRNLVDSVEKARTPILA 490 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 +FI+SLGI +VG A+ + K + + +N L ++P +G +IA+A Sbjct: 491 KFIYSLGIANVGLANAKLICKEFG---------YDFNKVSNATVDELTQIPQIGYVIAEA 541 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670 V ++Q P N +E LLKE++ S +++ V TG+++ R++ ++ + Sbjct: 542 FVSYFQKPENKLIIEDLLKEITFE-KEEAAGGSEKLKGLTFVITGSVEHFTNRNEVKDVI 600 Query: 671 TQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQQ 720 Q G V+ ++ KT+ +I DN SK +KA++LG+ ++ EE+F+ LL + Sbjct: 601 EQHGGKVTGSVTAKTNYLINNDNTSSSSKNKKARELGIPVITEEEFIQLLNE 652 >gi|283797409|ref|ZP_06346562.1| DNA ligase, NAD-dependent [Clostridium sp. M62/1] gi|291074764|gb|EFE12128.1| DNA ligase, NAD-dependent [Clostridium sp. M62/1] gi|295090074|emb|CBK76181.1| DNA ligase, NAD-dependent [Clostridium cf. saccharolyticum K10] Length = 684 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 185/718 (25%), Positives = 316/718 (44%), Gaps = 69/718 (9%) Query: 11 ALSIEQAR----KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + IE+ + + + L + YYQ S+ ++ + EYD L + Sbjct: 19 QMKIEEKQSGKLERMKELIGILREAGRAYYQESREVMSNFEYDRLYDELLELERE----T 74 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 + N P +G E+ SL K H P LSL K ++E+L++++ Sbjct: 75 GTVFGNSPTQNVGYEVVSSLPKERHESPMLSLNKTKSVEELKEWL------------GEQ 122 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 L K+DG I + YE+GK V A RG+G GE ++ + +P ++ + Sbjct: 123 SGLLSWKMDGLTIVLTYEEGKLVKAVTRGNGEIGEVITNNAKTFVNVPM--TIPYKGQLV 180 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 +RGE I +DFL +N+E+ V Y NPRN SG +R+LN R + FF L Sbjct: 181 LRGEAVIRYSDFLKINEEIEDV-DARYKNPRNLCSGSVRQLNSEVTAQRKVRFFAFSLVS 239 Query: 246 TSEIFAKGQYEMLQ-KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + K E ++ GF DGLV Sbjct: 240 ADGVDFKNSREEQFLWLKSQGFETVEYRLVTADTLEAAVAS--FSEAVEKNDVPSDGLVL 297 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 D+ + + LG A+ PR I+ K+A++ T L I+ RTG++ PVA EPV + Sbjct: 298 LFDDIAYGQSLGRTAKFPRDSIAFKWADEIQETTLSYIEWSASRTGLINPVAVFEPVELE 357 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ A++HN ++ L+ + GDR+ V +A +IP++ D + D Sbjct: 358 GTTVSRASVHNISIMEALE-----------LGEGDRITVYKANMIIPQIADNLTRSGVRD 406 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P CP+C + C A++++ F SRDA NI Sbjct: 407 -----IPETCPVCGGKT-----EVRKVNDVKSLYCTNPDCQAKKIKSFTLFTSRDALNIG 456 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GL + L+ F I ADIF L R ++ +I N+ GFG S L +++ + Sbjct: 457 GLSEATLEKFIAR----GFIHEYADIFHLDRHEE----EIVNMEGFGKKSFDKLTEAVKR 508 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + +L R ++ LG+ +G A+ L +++ + A L V + Sbjct: 509 AADTTLPRVVYGLGVAGIGLANAKMLCRHFQ---------YDFHAMRCAGKEELTAVDGI 559 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQ- 662 G+++A A ++F+ + +N V+ L++E++ E+ +E+ E V TG+++ + Sbjct: 560 GEVLADAWIQFFADEKNNQMVDRLMEELTIEAAPKEEGERTELFEGLVFVITGSVEHFKN 619 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLL 718 R + QE + G V+ ++ KT +I D SK +KA++LG+ ++ EEQF+ +L Sbjct: 620 RKEVQEIIESRGGKVTGSVTAKTSYLINNDAASNSSKNKKARELGIPVITEEQFIEML 677 >gi|154499783|ref|ZP_02037821.1| hypothetical protein BACCAP_03440 [Bacteroides capillosus ATCC 29799] gi|150271381|gb|EDM98638.1| hypothetical protein BACCAP_03440 [Bacteroides capillosus ATCC 29799] Length = 673 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 183/707 (25%), Positives = 301/707 (42%), Gaps = 58/707 (8%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 L ++ + + YY + P + D+ YD L + A + N P N +G Sbjct: 10 RELNDRLNRYRNEYYNLNSPSVSDAVYDRLFEELQELESA----TGVQMSNSPTNTVGYP 65 Query: 82 MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141 L K HSIP LSL+K+ N E+L +F+ K+DG I + Sbjct: 66 AVSKLEKTNHSIPLLSLDKVKNTEELCRFM------------GEHQVMFMLKLDGLTIKL 113 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201 YE GK V AA RGDG GE V+ RAI IP ++ + + V GE +I +DF L Sbjct: 114 TYEGGKLVEAATRGDGDVGEIVTHNTRAIGGIP--ENIQYEDRLVVTGEAFIRPSDFEQL 171 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260 ++ KPY N RN A+G +R + + R L F + + E + + Sbjct: 172 KTTLVDSDGKPYKNGRNLAAGSVRLFDAGACLGRRLMFMPFNVLEGMEELPRKSERLKAL 231 Query: 261 MRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 P ++ T ++K + IDG+V ++ +L K G Sbjct: 232 RPLGFLPCKYMVTKRPLTQKETEDGIRQLKEYAADADIPIDGIVITYNDIALSKSCGRTG 291 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 + ++ KF + T+L I+ GRTG + PVA EPV I G ++ A+LHN +I Sbjct: 292 HHYKDGLAFKFEDDLFQTKLQTIEWTPGRTGEIAPVAIFEPVEIDGCEVSRASLHNLSFI 351 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439 + L+ + G R+LV + +IP V + +R + P CP C Sbjct: 352 EDLE-----------LAPGCRILVSKRNMIIPHVEEN--LDRGNFSMDAVIPHQCPCCGE 398 Query: 440 RVVRDL----NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 + V AC ++L++ HFVS+ A NIEGL + L+ Sbjct: 399 PTRIHETSGRGENGEERVIKTLFCDNAACETRRLKQFVHFVSKKAMNIEGLSEGTLEKLI 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 I DI+ L + + +I + GFG+ S L+D+I + R+ + ER++ Sbjct: 459 GR----GWIHSYLDIYRLDQHRN----EIIRMDGFGEKSWQRLWDAIQQSRSTTFERYVI 510 Query: 556 SLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++ I VG ++ L + + S F + ++P G+ + I E Sbjct: 511 AMDIPMVGNTASKVLCREFHGSLDEFRDAVYGGY--------DFRQLPDFGETLHNNIQE 562 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNV----SSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ N C E L ++ N + K +V TG ++ R + + Sbjct: 563 WFNKEENFCIWEELQMMMNIQKPVETDNQTINRDNSFSGKTIVVTGKVEPYTRDEMNSLI 622 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 LGAV + ++RKTD ++ G+ GSKL KA++L + ++ E+F + Sbjct: 623 ASLGAVAGSSVTRKTDYLVCGEKAGSKLSKARELDIPVLTPEEFFRM 669 >gi|315655583|ref|ZP_07908481.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii ATCC 51333] gi|315489647|gb|EFU79274.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii ATCC 51333] Length = 794 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 197/818 (24%), Positives = 335/818 (40%), Gaps = 127/818 (15%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI-----ILDSEYDALKRRC 55 MKK+ IP E A + + L +I YY P + D+EYDAL + Sbjct: 1 MKKKTSIP------ESALAQHADLVDQIEAARTDYYDQ-TPETGVTRLSDAEYDALFVQL 53 Query: 56 DAIAHAFPDLARSEDPNGPLNKIGG----EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI 111 + A+PDL P+ P +GG H S++ +++ ++ + Sbjct: 54 QLLEAAYPDLV---TPDSPTQTVGGGGETANTEGFPPHHHLCQMGSIDDVFSYAEVDAWW 110 Query: 112 TRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP 171 R+ + + + E K+DG +++ Y G A RGDG +GEDV+ ++ I Sbjct: 111 ARVEKSL---EGQDFSVSAEVKVDGLAMSLTYLHGALTVGATRGDGFTGEDVTENVKTIA 167 Query: 172 TIPRVLSLNI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230 T+P LS PE++E+RGEVY+ DF A+N G K +ANPRNAA+G L++ +P Sbjct: 168 TVPVRLSGENVPELVEIRGEVYLPLADFAAMNAIRERDGEKLFANPRNAATGSLKQKDPV 227 Query: 231 DITRYL-NFFVHGLGKTSEIFA------KGQYEMLQKMRCLGFPVNNGV--------RQA 275 + F HG+G+ + Q + + + G Sbjct: 228 QAAKRPLAFLAHGVGEVRWNDPGAAAHLETQEDFYELLESWGLHSVRETPASLGLPLAGM 287 Query: 276 NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQA 335 +T + + ++M + R + IDG+V KVD F+ + LG AR+PRW ++KF ++ Sbjct: 288 HTLAEVHTVLDQMTAHRHDFAHQIDGVVLKVDSFAQRDALGSTARAPRWACAYKFPPEEV 347 Query: 336 STRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI 395 TRLL I++Q+GRTG +TP +E V + G+ ++ ATLHN + +D+ Sbjct: 348 HTRLLGIEVQVGRTGRVTPFGVMERVLVDGSYVSRATLHNAKEVAR-----------KDV 396 Query: 396 RVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAA 455 R GD V++++AG++IP+++ +++ R + P CP C + + + Sbjct: 397 RPGDTVVLRKAGDIIPEILGPVISLRPAGLPEWVMPDTCPSCGTELG-----AQKEGDID 451 Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF------------- 502 RC C AQ ERL H SR A +IEGLG++ + E Sbjct: 452 LRCPNQSGCPAQITERLIHVGSRYALDIEGLGEEGALALTQPEFGRGDVAAALAAGGQCE 511 Query: 503 ------------------------------SIRIPADIFTLQRRQQTSTTKIENILGFGD 532 + A +F L I G Sbjct: 512 LEDGTIVAVPSGEPRSLEAIEDLLPPAQSPVLTSEAGLFALHPEDLRDVMVWREIPGTAG 571 Query: 533 VSVTNL--------------YDSINKRRNISLERFIFSLGIRHVGAEIARSL-------- 570 + ++ +R + + + A ++ L Sbjct: 572 RDWQQVRFFWAKPRPLPKSAQEATGQRFGPPVAGKVVQTFFEQLQAAKSKELWRVLVALS 631 Query: 571 AKYYLSYQN--FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 ++ A++ + A L V VG++IA +I +++ P + V+A Sbjct: 632 IRHLGPVAARTIARQFATMSAIRAASVEQLGEVEGVGEVIAASIHDWFTVPWHQEIVDAW 691 Query: 629 LKEVSPSIGRHEKNVSSEIE------NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 + G+ + + + +V TG + R AQ V G + +S Sbjct: 692 EAAGVGAAGQADAVSGTPLALEPTLDGLTVVITGNVPGYTRESAQLAVEARGGKATGSVS 751 Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +KTD+++ G GSKL KAQ LG+ ++ F LL++ Sbjct: 752 KKTDLVVAGAGAGSKLAKAQALGIPVIESAGFEALLEK 789 >gi|330723500|gb|AEC45870.1| DNA ligase, NAD-dependent [Mycoplasma hyorhinis MCLD] Length = 673 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 213/707 (30%), Positives = 355/707 (50%), Gaps = 49/707 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN- 72 +QA+K++ L Q++ + Y+ PI+ D YD + + + L E+ N Sbjct: 12 EKQAKKQIEELRQKLHLWNHHYFDLDIPIVDDLVYDQELNKLKKLEKKYFYLFTLEENNA 71 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +G +++ K+ HS P LSL K +++E+L KF + + D + F +EP Sbjct: 72 SPTQIVGAKVDERFQKIKHSQPMLSLNKAYSLEELEKFAQKTIKI-----DENASFYVEP 126 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG I++ Y++GKF A RGDG +GEDVS I I S+N + IE+RGEV+ Sbjct: 127 KIDGISISLHYKQGKFTQAVTRGDGTTGEDVSHNIENIDAKYVPKSINYFDDIEIRGEVF 186 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + F +N E + + + NPRNAA+G LRRL+ + L FV+ + Sbjct: 187 LDLESFKNMNLEQARLEKPLFLNPRNAAAGQLRRLDSKSNKLANLKVFVYQVVNPELHNL 246 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 E +Q ++ LGF NN + H E++ + L Y+IDG+V KV+EF L Sbjct: 247 ATVEESIQFLQTLGFNTNNLGQHKANIHQSYQLIEEIQEKENKLNYEIDGVVIKVNEFKL 306 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +LG ++ P I+ KF++K T+L I +GRTG +T A LEPV + G+ I+ A Sbjct: 307 YDELGTTSKFPHSAIAFKFSDKVVQTKLKHIFATVGRTGKITYNAVLEPVLLQGSTISAA 366 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN +YIK L I V +K+AGE+IP+V+ + + F Sbjct: 367 TLHNYNYIKDLA-----------INTNSMVYIKKAGEIIPQVIQSVEKFEKTN---FEKI 412 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C S + + C Q ++ HF S++ +I+ LG++++ Sbjct: 413 TNCPECNSDL------IDSETGIDQFCINPNCLGIQL-RKIIHFCSKEGLDIKDLGEKKI 465 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F+ IR DIF L T +I + F S+ L ++I K ++ +L+ Sbjct: 466 ELFWDQN----LIRSIPDIFRLA----TKIEEISKLKSFQQKSILKLINAIEKAKHTTLD 517 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + IF+LGI+H+G + A+ LA+ + + ++ + + +G+ ++ Sbjct: 518 KLIFALGIKHIGQKTAKMLAQKVDNLEQL----------KTFNFDTFLEDKDIGEKTVES 567 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 + +++N N+ + L++ E+ S+ +EN V TGTL + R + + + Sbjct: 568 LKNYFKNEANLQIINELIQ--VNFEIIKEETYSNILENLSFVITGTLSR-SRSQIESIIL 624 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 Q VS+ +S+ T +I+G+N GSK +KA+ LGVKI++EE+F LL Sbjct: 625 QNKGKVSSSVSKNTSYLILGENGGSKEDKARNLGVKILSEEEFFKLL 671 >gi|154502352|ref|ZP_02039412.1| hypothetical protein RUMGNA_00165 [Ruminococcus gnavus ATCC 29149] gi|153796977|gb|EDN79397.1| hypothetical protein RUMGNA_00165 [Ruminococcus gnavus ATCC 29149] Length = 655 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 182/711 (25%), Positives = 313/711 (44%), Gaps = 65/711 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E +K + L + ++ Y Q I+ + EYD L + + + + Sbjct: 1 MEAKKKRMQELVELLNRARRAYEQEDTEIMSNYEYDRLYDELEGLERE----LGTTLASS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +G E+ L K H P LSL+K ++E L+ F+ + K Sbjct: 57 PTVNVGYEVLSELPKERHEKPMLSLDKTKDVEQLKSFL------------GEQKAVISWK 104 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG I + Y+ G+ A RG+G GE ++ + +P L + + +RGE I Sbjct: 105 MDGLTIVLTYQNGRLQKAVTRGNGEVGEVITNNAKVFRNLP--LQIPYQGELILRGEAVI 162 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 DF +N+ I Y NPRN SG +R+LN R + FF L K + Sbjct: 163 GYKDFERINE-QIEDVDARYKNPRNLCSGSVRQLNNEITARRNVKFFAFTLVKADGAEFE 221 Query: 253 G-QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + + L + GF V + + DGLV D+ + Sbjct: 222 NSRMQQLSWLEKQGFEVVEHHLADRASIEEEVAW--FSEQIVHNDFPSDGLVLVYDDIAY 279 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 + LG A+ PR + K+A++ T LL+I+ RTG++ PVA EPV + G ++ A Sbjct: 280 GQSLGTTAKFPRDSYAFKWADEIRETTLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRA 339 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 ++HN ++ L+ + VGD + V +A +IP++ + + D P Sbjct: 340 SVHNISIMEDLE-----------LGVGDVIQVYKANMIIPQIAENLTRSGVKD-----IP 383 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C + +T L C A+ L+ FVSRDA NIEGL + L Sbjct: 384 QVCPVCGGATKIKMENETKTL-----YCTNPECQAKHLKSFALFVSRDAMNIEGLSEATL 438 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F IR DI+ L R ++ I+ + GFG+ S L S+ R+ ++ Sbjct: 439 EKFIGE----GFIRDFTDIYHLDRYEE----TIKTLEGFGEKSYAKLITSVENSRSTTMP 490 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + I+SLGI ++G A+ + + + + + L+ + VG++IA+ Sbjct: 491 KVIYSLGIANIGLSNAKMICRAFDN---------DPQRMMQATVEELVDIQGVGEVIART 541 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYV 670 V+++ + + + LL+EV E++ EN V TG+++ R + +E + Sbjct: 542 FVDYFSDETHRDLFKRLLQEVKLQKEEGEESA-QIFENMNFVITGSVEHFANRREVKEII 600 Query: 671 TQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G V+ ++ KT+ +I D + SK +KA++L V I++E QFL +L+ Sbjct: 601 ESRGGKVTGSVTGKTNYLINNDVQSASSKNKKAKELNVPIISESQFLEMLE 651 >gi|323485875|ref|ZP_08091210.1| hypothetical protein HMPREF9474_02961 [Clostridium symbiosum WAL-14163] gi|323400863|gb|EGA93226.1| hypothetical protein HMPREF9474_02961 [Clostridium symbiosum WAL-14163] Length = 674 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 170/711 (23%), Positives = 292/711 (41%), Gaps = 59/711 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++ L ++ + D YY + P + D YD L + + N P + Sbjct: 7 EKQRDLNDRLNRYRDEYYNRNAPSVSDEVYDRLFDELKELEQE----TGIQMANSPTQTV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G L K H IP LSL+K + DL F+ L K+DG Sbjct: 63 GYPAVSRLEKTRHEIPLLSLDKTKSSMDLLNFM------------GEQQVMLMLKLDGLT 110 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + + YE G+ + AA RGDG GE ++ RAI IP + E + V GE +I +DF Sbjct: 111 VKLTYENGELLEAATRGDGDEGEIITHNTRAISGIP--SHITYKERLVVTGEGFIRPSDF 168 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAKGQYEM 257 L + KPY N RN A+G +R ++ F G+ + + ++ Sbjct: 169 EELKTSLQDSSGKPYKNGRNLAAGSIRLMDAKICQERRLVFMPFGVLEGFPHLTRKSDKL 228 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEM-KSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + P V + V + + IDG+V ++ + + G Sbjct: 229 RELRALGFQPCKYLVTKQKLTLENVEAGIYQLRQYATDKDIPIDGIVVSFNDIAYAQSCG 288 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + +++KF + + L I+ GRTG + PVA PV I G ++ A+LHN Sbjct: 289 RTGHHYKDGLAYKFEDDLHESLLQYIEWTPGRTGEIAPVAVFTPVEIDGCEVSRASLHNL 348 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 +I+ L+ + G+R+LV + +IP V + +R + + P CP Sbjct: 349 SFIEDLE-----------LMAGNRILVSKRNMIIPHVEEN--LDRGGFSMVDTIPRVCPC 395 Query: 437 CQSRVVRDL----NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 C + C ++L++ HFVS+ A +IEGL + L+ Sbjct: 396 CGQPTRIHESSGKGENGEDRIIKTLYCDNPDCETRRLKKFVHFVSQKAMDIEGLSEAALE 455 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F I DI+ L R + +I + GFG+ S L+D+I + RN + ER Sbjct: 456 KFIGQ----GFIHSYLDIYRLDRYRA----EIVRMDGFGEKSWQRLWDAIQQSRNTTFER 507 Query: 553 FIFSLGIRHVGAEIARSLAKYYL-SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 ++ S+ I +G ++ L + + F + ++P G+ + Sbjct: 508 YLISMDIPMIGNTASKVLGRVFHYDLDEFRDAVYGGY--------DFRQLPDFGETLHNN 559 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I +++ N C E L ++ ++ + K +V TG ++ R Sbjct: 560 IHDWFCVEDNFCIWEELQTMMNIQKPAVVEHSEDREQDNPFVGKTIVVTGKVEPYTRDGI 619 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + + LGA + +S+KTD ++ G+N GSKL KA+ LGV +++ +F + Sbjct: 620 NDLIESLGAHAGSSVSKKTDYLVCGENAGSKLSKARDLGVTVLSPAEFFSM 670 >gi|304390721|ref|ZP_07372673.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325604|gb|EFL92850.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 799 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 198/822 (24%), Positives = 340/822 (41%), Gaps = 131/822 (15%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI-----ILDSEYDALKRRC 55 +KK+ IP E A + + L +I YY P + D+EYDAL + Sbjct: 2 VKKKTSIP------ESALAQHADLVDQIEAARTDYYDQ-TPETGVTRLSDAEYDALFVQL 54 Query: 56 DAIAHAFPDLARSEDPNGPLNKIGG----EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI 111 + A+PDL P+ P +GG H S++ +++ ++ + Sbjct: 55 QLLEAAYPDLV---TPDSPTQTVGGSGETANTEGFPPHHHLCQMGSIDDVFSYAEVDAWW 111 Query: 112 TRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP 171 R+ + + + E K+DG +++ Y G A RGDG +GEDV+ ++ I Sbjct: 112 ARVEKSL---EGQDFSVSAEVKVDGLAMSLTYLHGTLAVGATRGDGFTGEDVTENVKTIA 168 Query: 172 TIPRVLSLNI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230 T+P LS PE++E+RGEVY+ DF A+N G K +ANPRNAA+G L++ +P Sbjct: 169 TVPVRLSGENVPELVEIRGEVYLPLADFAAMNAARERDGEKLFANPRNAATGSLKQKDPV 228 Query: 231 DITRYL-NFFVHGLGKTSEIFA------KGQYEMLQKMRCLGFPVNNGV--------RQA 275 + F HG+G+ + Q + + + G Sbjct: 229 QAAKRPLAFLAHGVGEVRWADPGAAAHLETQEDFYELLESWGLHSVRETPASLGMSLAGI 288 Query: 276 NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQA 335 ++ I + ++M + R + IDG+V KVD F+ + LG AR+PRW ++KF ++ Sbjct: 289 HSLAEIHTVLDQMTAHRHDFAHQIDGVVLKVDSFAQRDALGSTARAPRWACAYKFPPEEV 348 Query: 336 STRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI 395 TRLL I++Q+GRTG +TP +E V + G+ ++ ATLHN + +D+ Sbjct: 349 HTRLLGIEVQVGRTGRVTPFGVMERVLVDGSYVSRATLHNAKEVAR-----------KDV 397 Query: 396 RVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAA 455 R GD V++++AG++IP+++ +++ R + P CP C + + + Sbjct: 398 RPGDTVVLRKAGDIIPEILGPVMSLRPAGLPEWVMPDTCPSCGTELG-----AQKEGDID 452 Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF------------- 502 RC C AQ ERL H SR+A +IEGLG++ + E Sbjct: 453 LRCPNQSGCPAQITERLIHVGSRNALDIEGLGEEGALALTQPEFGRGDVAAALAAGGHCE 512 Query: 503 ------------------------------SIRIPADIFTLQRRQQTSTTKIENILGFGD 532 + A +F LQ I G G Sbjct: 513 LEDGTIVAVPSGEPRSLEAIEDLLPPPQSPVLTSEAGLFALQPEDLRDVMVWREIPGTGG 572 Query: 533 VSVTNL--------------YDSINKRRNISLERFIFSLGIRHVGAEIARSL-------- 570 + ++ +R + + + A ++ L Sbjct: 573 RDWQQVRFFWAKPRPLPKAAQEATGQRFGPPVAGKVVQTFFEQLQAAKSKELWRVLVALS 632 Query: 571 AKYYLSYQN--FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 ++ A++ + A L +G++IA +I +++ P + V+A Sbjct: 633 IRHLGPVAARTIARQFVTMSALRVASAEQLGEAEGIGEVIAASIRDWFTVPWHQEIVDAW 692 Query: 629 LKEVSPSIGRHE----------KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 ++ + E N++ +E +V TG + R AQ V G + Sbjct: 693 EAAGVGAVSKAEGASEASLAGDTNLAPTLEGLTVVITGNIPGYTRESAQLAVEARGGKAT 752 Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +S+KTD+++ G GSKL KAQ LG+ ++ F LL++ Sbjct: 753 GSVSKKTDLVVAGAGAGSKLSKAQALGIPVIESAGFEALLEK 794 >gi|298345134|ref|YP_003717821.1| DNA ligase (NAD(+)) [Mobiluncus curtisii ATCC 43063] gi|298235195|gb|ADI66327.1| DNA ligase (NAD(+)) [Mobiluncus curtisii ATCC 43063] Length = 799 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 199/822 (24%), Positives = 340/822 (41%), Gaps = 131/822 (15%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI-----ILDSEYDALKRRC 55 +KK+ IP E A + + L +I YY P + D+EYDAL + Sbjct: 2 VKKKTSIP------ESALAQHADLVDQIEAARTDYYDQ-TPETGVTRLSDAEYDALFVQL 54 Query: 56 DAIAHAFPDLARSEDPNGPLNKIGG----EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI 111 + A+PDL P+ P +GG H S++ +++ ++ + Sbjct: 55 QLLEAAYPDLV---TPDSPTQTVGGSGETANTEGFPPHHHLCQMGSIDDVFSYAEVDAWW 111 Query: 112 TRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP 171 R+ + + + E K+DG +++ Y G A RGDG +GEDV+ ++ I Sbjct: 112 ARVEKSL---EGQDFSVSAEVKVDGLAMSLTYLHGTLAVGATRGDGFTGEDVTENVKTIA 168 Query: 172 TIPRVLSLNI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230 T+P LS PE++E+RGEVY+ DF A+N G K +ANPRNAA+G L++ +P Sbjct: 169 TVPVRLSGENVPELVEIRGEVYLPLADFAAMNAARERDGEKLFANPRNAATGSLKQKDPV 228 Query: 231 DITRYL-NFFVHGLGKTSEIFA------KGQYEMLQKMRCLGFPVNNGV--------RQA 275 + F HG+GK + Q + + + G Sbjct: 229 QAAKRPLAFLAHGVGKVRWADPGAAAHLETQEDFYELLESWGLHSVRETPASLGLSLAGI 288 Query: 276 NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQA 335 ++ I + ++M + R + IDG+V KVD F+ + LG AR+PRW ++KF ++ Sbjct: 289 HSLAEIHTVLDQMTAHRHDFAHQIDGVVLKVDSFAQRDALGSTARAPRWACAYKFPPEEV 348 Query: 336 STRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI 395 TRLL I++Q+GRTG +TP +E V + G+ ++ ATLHN + +D+ Sbjct: 349 HTRLLGIEVQVGRTGRVTPFGVMERVLVDGSYVSRATLHNAKEVAR-----------KDV 397 Query: 396 RVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAA 455 R GD V++++AG++IP+++ +++ R + P CP C + + + Sbjct: 398 RPGDTVVLRKAGDIIPEILGPVMSLRTAGLPEWVMPDTCPSCGTELG-----AQKEGDID 452 Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF------------- 502 RC C AQ ERL H SR+A +IEGLG++ + E Sbjct: 453 LRCPNQSGCPAQITERLIHVGSRNALDIEGLGEEGALALTQPEFGRGDVAAALAAGGHCE 512 Query: 503 ------------------------------SIRIPADIFTLQRRQQTSTTKIENILGFGD 532 + A +F LQ I G G Sbjct: 513 LEDGTIVAVPSGEPRSLEAIEDLLPPPQSPVLTSEAGLFALQPEDLRDVMVWREIPGTGG 572 Query: 533 VSVTNL--------------YDSINKRRNISLERFIFSLGIRHVGAEIARSL-------- 570 + ++ +R + + + A ++ L Sbjct: 573 RDWQQVRFFWAKPRPLPKAAQEATGQRFGPPVAGKVVQTFFEQLQAAKSKELWRVLVALS 632 Query: 571 AKYYLSYQN--FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 ++ A++ + A L +G++IA +I +++ P + V+A Sbjct: 633 IRHLGPVAARTIARQFVTMSALRVASAEQLGEAEGIGEVIAASIRDWFTVPWHQEIVDAW 692 Query: 629 LKEVSPSIGRHE----------KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 ++ + E N++ +E +V TG + R AQ V G + Sbjct: 693 EAAGVGAVSKAEGASEASLAGDTNLAPTLEGLTVVITGNIPGYTRESAQLAVEARGGKAT 752 Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +S+KTD+++ G GSKL KAQ LG+ ++ F LL++ Sbjct: 753 GSVSKKTDLVVAGAGAGSKLSKAQALGIPVIESAGFEALLEK 794 >gi|256545196|ref|ZP_05472562.1| DNA ligase, NAD-dependent [Anaerococcus vaginalis ATCC 51170] gi|256399237|gb|EEU12848.1| DNA ligase, NAD-dependent [Anaerococcus vaginalis ATCC 51170] Length = 668 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 186/714 (26%), Positives = 333/714 (46%), Gaps = 58/714 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +I++ + + L +I+ + YY P + D EYD L + + Sbjct: 3 NIDKIK--IDELIDKINELNYHYYTLDNPTVSDGEYDKLYDELLNLEKK----TGYVNEF 56 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSI 126 P ++GG + K H S +K N L+ +I R + + + + Sbjct: 57 SPTQRVGGAILDKFEKHFHITRLYSQDKSQNYTQLKDWIIRTKKLRDQYNKTHEDKLEEL 116 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 F E K DG I + YE G AA RGDG SGEDV+ + IPTIP + ++E Sbjct: 117 EFITEYKFDGLTINLTYEDGLLKTAATRGDGISGEDVTKQVLTIPTIPTKIKE--KSLLE 174 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246 ++GE + + N+E P N RNAA+G +R L+ + + T Sbjct: 175 IQGEAVMPLSSLKKYNEE----NEIPLKNARNAAAGAIRNLDTSQTKKRNLKAYFYQIST 230 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + + K + E L+ ++ PV + F IV + +K R + DG+V KV Sbjct: 231 NNLDFKTEEEKLEFLKEQKLPVYPYKKVIKKFDDIVKEIDFIKEERHHIDVLTDGVVIKV 290 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ Q+ LG + PRW I++K+ ++ +T LLD+ +GR+G +TP+A LEPV+ G Sbjct: 291 NDVKTQEVLGYTNKFPRWSIAYKYDPEEYTTTLLDVVWNVGRSGKVTPLAILEPVDFSGV 350 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATL+N D I + +++G +V ++R+ +VIP+++ ++ + + Sbjct: 351 TVQRATLNNYDDI-----------LRKKVKIGSKVFIRRSNDVIPEILGVVDEN-QENTK 398 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP C S + + C ++C+ Q R+ HF SRDA +IEGL Sbjct: 399 EIEKPDKCPYCHSEL--------IEGNVHIYCPNSISCTPQLKARMVHFASRDAMDIEGL 450 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 ++ ++ F I+ D++ L + + F + NL ++I + Sbjct: 451 SEKTIELFINK----LGIKEIYDLYDLSYDDLIN------LESFKEKKTNNLLNAIENSK 500 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + L FI ++GI +VG + AR LA+ Y S+ + LI + +G+ Sbjct: 501 SCELNHFIHAIGIPNVGIKTARDLAEKYKSFDKLRET----------KQDDLIEIEDIGE 550 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A+ IV+F+ + +++ LL + S+ ++ K+V TGT++ +R+ Sbjct: 551 KTAEDIVDFFNDSNIKKSLDILLSKGIKIKAIDTSEKSNSLDGMKIVITGTIENYKRNDI 610 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + + V++ +S+ TD+++ G+ PGSK EKA++LGVKI+ ++ L++ Sbjct: 611 KNLIIENNGDVTSSVSKNTDLVLCGEKPGSKKEKAEKLGVKILENQELFEFLKK 664 >gi|315656502|ref|ZP_07909391.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315493061|gb|EFU82663.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 799 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 198/822 (24%), Positives = 340/822 (41%), Gaps = 131/822 (15%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI-----ILDSEYDALKRRC 55 +KK+ IP E A + + L +I YY P + D+EYDAL + Sbjct: 2 VKKKTSIP------ESALAQHADLVDQIEAARTDYYDQ-TPETGVTRLSDAEYDALFVQL 54 Query: 56 DAIAHAFPDLARSEDPNGPLNKIGG----EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI 111 + A+PDL P+ P +GG H S++ +++ ++ + Sbjct: 55 QLLEAAYPDLV---TPDSPTQTVGGSGETANTEGFPPHHHLCQMGSIDDVFSYAEVDAWW 111 Query: 112 TRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP 171 R+ + + + E K+DG +++ Y G A RGDG +GEDV+ ++ I Sbjct: 112 ARVEKSL---EGQDFSVSAEVKVDGLAMSLTYLHGTLAVGATRGDGFTGEDVTENVKTIA 168 Query: 172 TIPRVLSLNI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230 T+P LS PE++E+RGEVY+ DF A+N G K +ANPRNAA+G L++ +P Sbjct: 169 TVPVRLSGENVPELVEIRGEVYLPLADFAAMNATRERDGEKLFANPRNAATGSLKQKDPV 228 Query: 231 DITRYL-NFFVHGLGKTSEIFA------KGQYEMLQKMRCLGFPVNNGV--------RQA 275 + F HG+G+ + Q + + + G Sbjct: 229 QAAKRPLAFLAHGVGEVRWADPGAAAHLETQEDFYELLESWGLHSVRETPASLGLSLAGI 288 Query: 276 NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQA 335 ++ I + ++M + R + IDG+V KVD F+ + LG AR+PRW ++KF ++ Sbjct: 289 HSLAEIHTVLDQMTAHRHDFAHQIDGVVLKVDSFAQRDALGSTARAPRWACAYKFPPEEV 348 Query: 336 STRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI 395 TRLL I++Q+GRTG +TP +E V + G+ ++ ATLHN + +D+ Sbjct: 349 HTRLLGIEVQVGRTGRVTPFGVMERVLVDGSYVSRATLHNAKEVAR-----------KDV 397 Query: 396 RVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAA 455 R GD V++++AG++IP+++ +++ R + P CP C + + + Sbjct: 398 RPGDTVVLRKAGDIIPEILGPVMSLRPAGLPEWVMPDTCPSCGTELG-----AQKEGDID 452 Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF------------- 502 RC C AQ ERL H SR+A +IEGLG++ + E Sbjct: 453 LRCPNQSGCPAQITERLIHVGSRNALDIEGLGEEGALALTQPEFGRGDVAAALAAGGHCE 512 Query: 503 ------------------------------SIRIPADIFTLQRRQQTSTTKIENILGFGD 532 + A +F LQ I G G Sbjct: 513 LEDGTIVAVPSGEPRSLEAIEDLLPPPQSPVMTSEAGLFALQPEDLRDVMVWREIPGTGG 572 Query: 533 VSVTNL--------------YDSINKRRNISLERFIFSLGIRHVGAEIARSL-------- 570 + ++ +R + + + A ++ L Sbjct: 573 RDWQQVRFFWAKPRPLPKAAQEATGQRFGPPVAGKVVQTFFEQLQAAKSKELWRVLVALS 632 Query: 571 AKYYLSYQN--FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 ++ A++ + A L +G++IA +I +++ P + V+A Sbjct: 633 IRHLGPVAARTIARQFVTMSALRVASAEQLGEAEGIGEVIAASIRDWFTVPWHQEIVDAW 692 Query: 629 LKEVSPSIGRHE----------KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 ++ + E N++ +E +V TG + R AQ V G + Sbjct: 693 EAAGVGAVSKAEGASEASLAGDTNLAPTLEGLTVVITGNIPGYTRESAQLAVEARGGKAT 752 Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +S+KTD+++ G GSKL KAQ LG+ ++ F LL++ Sbjct: 753 GSVSKKTDLVVAGAGAGSKLSKAQALGIPVIESAGFEALLEK 794 >gi|227485017|ref|ZP_03915333.1| DNA ligase (NAD(+)) [Anaerococcus lactolyticus ATCC 51172] gi|227237014|gb|EEI87029.1| DNA ligase (NAD(+)) [Anaerococcus lactolyticus ATCC 51172] Length = 667 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 191/709 (26%), Positives = 334/709 (47%), Gaps = 57/709 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 EL + + I+ D YY KP++ D EYD L + + N P N++ Sbjct: 5 DELKKIIERINELDYHYYTLDKPLVSDGEYDKLYNQLIKLQKN----LAYVPENSPTNRV 60 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132 GG++ K H LS +K + ++++++I R R + + ++ F +E Sbjct: 61 GGQILDKFEKHYHLTRLLSQDKAQSYDEIKEWIERCKRLKEAYESTSGERLPNLEFVMEY 120 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K DG I + YE G AA RG+G GE V A I +IP + ++E++GE Sbjct: 121 KFDGLTINLTYEDGILKTAATRGNGIVGEQVKAQAETIRSIPFTIKE--KSLLEIQGEAL 178 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + ++ N E N RNAA+G +R L+ + + T+ I K Sbjct: 179 MPLSELDRYNKE----NETQLKNARNAAAGAIRNLDTKETAKRHLTAYFYAVPTNSINFK 234 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 + EML ++ + V+ ++ + I++ +K R TL DG+V K+++ Q Sbjct: 235 NEEEMLSFLKEMKLNVHPYHKKVTSLDEIINELERIKEERKTLDVLTDGVVIKINDKKTQ 294 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG + PRW I+ KF ++ +T+LLD+ +GRTG +TP A LEPV+ G ++ AT Sbjct: 295 EVLGVTEKFPRWSIAFKFEPEEFTTKLLDVIWNVGRTGKVTPSAILEPVDFSGVTVSRAT 354 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 L+N D I+ + +++G V ++R+ +VIP+++ ++ P P+ Sbjct: 355 LNNYDDIER-----------KKVKIGSDVFIRRSNDVIPEILGVVDEN-QPGTIKIEKPT 402 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S ++++ C ++C+ Q L R++H+ SR+A +IEGL ++ + Sbjct: 403 HCPYCHSELIQEK--------VHIVCPNSISCTPQLLARMEHYASRNAMDIEGLSEKTIG 454 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + SI+ DI+ L + + FG NL SI+ +N L+ Sbjct: 455 QLIEE----LSIKEIYDIYDLTYDELIK------LERFGHKKAKNLLASIDNSKNRDLDA 504 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FI+++GI +VG AR LA + S+ LI + +G+I + I Sbjct: 505 FIYAIGIPNVGERTARDLANKFKSFDKLRNAT----------VDELIEIDDIGEITGENI 554 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVT 671 VEF+ + + +++ LL + E S+ ++ V TGT+ R ++ + Sbjct: 555 VEFFHDKNIVESIDILLSKGINLNNPRENTSDSKKLDGINFVITGTIDGYNRDDIKKMLE 614 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 GA V +S+ TDI++ G+ GSK +KA +L V+I +E+ L + Sbjct: 615 DNGANVRGSVSKNTDIVLAGEKAGSKKDKAIELNVEIYEDEKLYSFLSE 663 >gi|310830411|ref|YP_003965512.1| DNA ligase, NAD-dependent [Paenibacillus polymyxa SC2] gi|309249878|gb|ADO59444.1| DNA ligase, NAD-dependent [Paenibacillus polymyxa SC2] Length = 662 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 199/716 (27%), Positives = 330/716 (46%), Gaps = 65/716 (9%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +I A++ + L EI HD+ Y KP+I D EY+ L + +P+ P+ Sbjct: 3 TIFNAQQRIKQLTSEIRKHDELY-DQFKPVISDQEYNNLYYELLDLEKQYPEFVI---PD 58 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +KI + L KV HS S EK+ +++ F+ R ++ Sbjct: 59 SPTHKIYTVLVDGLEKVRHSSFMGSQEKMKTWDEVVSFMNR----------YEGKVLVQH 108 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG I + Y G A RG+G G+++ +R I +P ++ +E+R E Sbjct: 109 KLDGLTIVLTYMDGLLQKAVTRGNGEIGQNIIHTVRTIKNVP--ANIPFKGRLEIRMEGI 166 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFA 251 I +F +N ++NPRN SG L +LN + R + V + + Sbjct: 167 IPYAEFERINV------DGAFSNPRNLVSGTLNQLNASIASERNVQGIVFDIVHIEGMTF 220 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL----PYDIDGLVYKVD 307 E L+ ++ GF V T G+ ++ + P+ IDGLV K D Sbjct: 221 NKISEQLRFLKEQGFTTVESVAFEQTVEGLSQMNAYLQEMEENTRKTLPFMIDGLVIKFD 280 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E S +++LG ++ PRW ++KFA +A+T +L ++ + RTG +TPVA L V+I Sbjct: 281 ELSAKEKLGNTSKHPRWSAAYKFASLEATTTILGVEHSVARTGQITPVALLNTVDIDSVD 340 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ A+L N I+ +DIR+GDRV V RA +VIP+V I R + Q Sbjct: 341 VSRASLANYGMIEK-----------KDIRIGDRVFVIRANDVIPQVTASIKEMRTGNEQL 389 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P+ CP C S + V A+ G CS Q +++HF SR A NI LG Sbjct: 390 IQTPTCCPKCGSPT---------EFVGAYLYCRGEQCSPQLQGKIEHFASRKALNINSLG 440 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ FFK+ IR D++ LQ +++ ++ GFG S T L + + + Sbjct: 441 TSTVELFFKN----GIIRHFLDLYNLQEKEEQIC----SLEGFGKKSFTKLQKELERVKK 492 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 L + + +L ++H+G ++ L+K Y + L+ +P G Sbjct: 493 EPLHKVLIALSVKHLGETKSKELSKVYKDIDAIMNASEDAEDFRAA----LLALPDFGSA 548 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRH 664 I +IV F+ + + + + N+S + + +V TGTL + R Sbjct: 549 ITDSIVAFFTSEEGRSLIRKMQSIGFTMKSEFDTNISQENLPLSGQTVVVTGTLGAMGRD 608 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 +A+E + LGA VS +S+KT ++VG G SK +KA +LGV+++ E++FL ++ Sbjct: 609 EAKEKLEALGAKVSGSISKKTSFVVVG--TGKSKHDKAIELGVRVVYEDEFLQIIA 662 >gi|323359739|ref|YP_004226135.1| NAD-dependent DNA ligase [Microbacterium testaceum StLB037] gi|323276110|dbj|BAJ76255.1| NAD-dependent DNA ligase [Microbacterium testaceum StLB037] Length = 810 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 214/824 (25%), Positives = 341/824 (41%), Gaps = 134/824 (16%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + LS++ AR E L Q I+ + YY ++ D+ YD R +A+ P+L Sbjct: 7 LPDLSLDDARAEAIDLTQRITDAREAYYGRDAELVDDATYDGWMHRLEALERRHPELQGQ 66 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P +G L + H+ LSL+ +++ ++LR + + + + Sbjct: 67 ---DSPTLSVGAAEATDLATIEHAERMLSLDNVFSPDELRDWAVKTEAAAGRAVH----W 119 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEV 187 E KIDG I++RYE G AA RGDG GE V+ + +PR L P I+EV Sbjct: 120 LSELKIDGLAISLRYENGVLTSAATRGDGRVGEIVTENALRLADVPRELGGEGHPPIVEV 179 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYA--------------------------------N 215 RGEV+I F LN + A N Sbjct: 180 RGEVFIPVAKFENLNRLQGEYRDRAVAEARERHAGRRAGRPFDEEKAEQAAARRFPAFAN 239 Query: 216 PRNAASGILRRLNPTD----------ITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 PRNAASG LR+ L+ +VHG+G + Q E+ + G Sbjct: 240 PRNAASGGLRQQIDKKTGLELEAGLARIESLSLYVHGIGAWPDPPVAAQSEIYDLLASWG 299 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 P + R ++ G++S+ R + ++IDG+V KVDE +L +LG +R+PRW Sbjct: 300 LPTSPYSRVESSIDGVLSFVAHYGEHRHDVEHEIDGVVVKVDELALHDELGATSRAPRWA 359 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 I++K+ +Q +T+LLDI + +GRTG TP A +EP + G+++ ATLHN+D +K Sbjct: 360 IAYKYPPEQVNTKLLDIVVSVGRTGRATPFAVMEPAKVAGSVVRQATLHNQDVVK----- 414 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 + + +GD V++++AG+VIP+V+ +V R + F P+ CP C + + Sbjct: 415 ------VKGVLIGDTVVLRKAGDVIPEVLGPVVELRDGTERAFVMPADCPECGTPLR--- 465 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP----- 500 + RC +C AQ R++H SR A +IE LG+ + E P Sbjct: 466 --PAKEGDIDLRCPNARSCPAQVRGRVEHIGSRGALDIEALGEVTAAALTQPEVPERPPL 523 Query: 501 ----------------------------------------------AFSIRIPADIFTL- 513 P L Sbjct: 524 DTEAGLFDLTVEQLVPIEVVVRDSETGERKVDPETGELVRRAPFQKLGPASYPPGAENLD 583 Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 ++ + + T L + K + L R + SL IRHVG AR+LA++ Sbjct: 584 PAERRRRGIRKDYREVLPSEQATKLVAELEKAKTKDLWRLLVSLNIRHVGPVAARALAQW 643 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + S L V VG IIA A++++++ + VE + Sbjct: 644 FGSLDAIRAATR----------EELAAVEGVGGIIADAVIDWFEVDWHREIVETWSRAGV 693 Query: 634 PS------IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 + +V TG+L R AQE + G ++ +S+KTD Sbjct: 694 RFSIPGHPGPGAAAAAGGVLAGLTVVATGSLDGYTREGAQEAILAAGGKAASSVSKKTDF 753 Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731 + G GSKL KA++LG++I++ QF L++Q L D Sbjct: 754 VAAGPGAGSKLAKAEELGLRILDAAQFRILVEQGPGALDGVGSD 797 >gi|304372912|ref|YP_003856121.1| DNA ligase, NAD-dependent [Mycoplasma hyorhinis HUB-1] gi|304309103|gb|ADM21583.1| DNA ligase, NAD-dependent [Mycoplasma hyorhinis HUB-1] Length = 673 Score = 419 bits (1076), Expect = e-114, Method: Composition-based stats. Identities = 213/707 (30%), Positives = 356/707 (50%), Gaps = 49/707 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN- 72 +QA+K++ L Q++ + Y+ PI+ D YD + + + L E+ N Sbjct: 12 EKQAKKQIEELRQKLHLWNHHYFDLDIPIVDDLVYDQELNKLKKLEKKYFYLFTLEENNA 71 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +G +++ K+ HS P LSL K +++E+L+KF + + D + F +EP Sbjct: 72 SPTQIVGAKVDERFQKIKHSQPMLSLNKAYSLEELKKFAQKAIKI-----DENASFYVEP 126 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG I++ Y++GKF A RGDG +GEDVS I I S+N + IE+RGEV+ Sbjct: 127 KIDGISISLHYKQGKFTQAVTRGDGTTGEDVSHNIENIDAKYVPKSINYFDDIEIRGEVF 186 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + F +N E + + + NPRNAA+G LRRL+ + L FV+ + Sbjct: 187 LDLESFKNMNLEQARLEKPLFLNPRNAAAGQLRRLDSKSNKLANLKVFVYQVVNPELHNL 246 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 E +Q ++ LGF NN + H E++ + L Y+IDG+V KV+EF L Sbjct: 247 ATVEESIQFLQTLGFNTNNLGQHKANIHQSYQLIQEIQEKENKLNYEIDGVVIKVNEFKL 306 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +LG ++ P I+ KF++K T+L I +GRTG +T A LEPV + G+ I+ A Sbjct: 307 YDELGTTSKFPHSAIAFKFSDKVVQTKLKHIFATVGRTGKITYNAVLEPVLLQGSTISAA 366 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN +YIK L I V +K+AGE+IP+V+ + + F Sbjct: 367 TLHNYNYIKDLA-----------INTNSMVYIKKAGEIIPQVIQSVEKFEKTN---FEKI 412 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C S + + C Q ++ HF S++ +I+ LG++++ Sbjct: 413 TNCPECNSDL------IDSETGIDQFCINPNCLGIQL-RKIIHFCSKEGLDIKDLGEKKI 465 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F+ IR DIF L T +I + F S+ L ++I K ++ +L+ Sbjct: 466 ELFWDQN----LIRSIPDIFRLA----TKIEEISKLKSFQQKSILKLINAIEKAKHTTLD 517 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + IF+LGI+H+G + A+ LA+ + + ++ + + +G+ ++ Sbjct: 518 KLIFALGIKHIGQKTAKMLAQKVDNLEQL----------KTFNFDTFLEDKDIGEKTVES 567 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 + +++N N+ + L++ E+ S+ +EN V TGTL + R + + + Sbjct: 568 LKNYFKNEANLQIINELIQ--VNFEIIKEETYSNILENLSFVITGTLSR-SRSQIELIIL 624 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 Q VS+ +S+ T +I+G+N GSK +KA+ LGVKI++EE+F LL Sbjct: 625 QNKGKVSSSVSKNTSYLILGENGGSKEDKARNLGVKILSEEEFFKLL 671 >gi|225569253|ref|ZP_03778278.1| hypothetical protein CLOHYLEM_05335 [Clostridium hylemonae DSM 15053] gi|225162052|gb|EEG74671.1| hypothetical protein CLOHYLEM_05335 [Clostridium hylemonae DSM 15053] Length = 648 Score = 418 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 188/705 (26%), Positives = 311/705 (44%), Gaps = 65/705 (9%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L ++++ YYQ ++ I+ + EYD L ++ P +G Sbjct: 1 MQELVEQLNKAGKAYYQDAEEIMSNYEYDRLYDELVSLEKE----LGITLSGSPTANVGY 56 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 E+ L K H P LSL+K ++E+L+KF + K+DG I Sbjct: 57 EVLSELPKERHDSPMLSLDKTKDVEELKKFA------------GGQKVMMSWKLDGLTIV 104 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + Y G A RG+G GE ++ R IP L + + +RGE I DF Sbjct: 105 LTYRDGTLYKAVTRGNGEVGEVITNNARVFRNIP--LQIAYKGELILRGEAVIGYKDFEK 162 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259 +N E+ V Y NPRN SG +R+LN R + F+ L + + Sbjct: 163 INGEIEDVD-ARYKNPRNLCSGSVRQLNNEITAKRNVRFYAFTLVQADGVDFHNSRVCQM 221 Query: 260 -KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 +R GF V + + + + DGLV D+ + LG Sbjct: 222 EWLREQGFEVVEFCEVTKDTLE--AEVIKFSEKIAENDFPSDGLVLVYDDVEYGRSLGRT 279 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++ PR + K+A++ T+LL+I+ RTG++ PVA EPV + G ++ A++HN Sbjct: 280 SKFPRDSFAFKWADETKETKLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRASVHNLSI 339 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 ++ L+ + VGD + V +A +IP++ + + D P CP+C Sbjct: 340 MEELE-----------LGVGDEIEVYKANMIIPQIAENLTRSGVKD-----IPLHCPVCG 383 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 A C A+ L+ FVSRDA NIEGL + L+ F Sbjct: 384 GDT-----EVKQVSNAKALYCINPDCQAKHLKSFALFVSRDALNIEGLSEATLEKFIAK- 437 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I+ ADIF L+R Q +IE + GFG+ S NL +SI K R +L + I+ LG Sbjct: 438 ---GYIKEYADIFHLERFQD----EIEKMEGFGEKSYRNLIESIEKARTTTLPKVIYGLG 490 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I ++G A+ + + + + ++A L + VG +IA A V+++ + Sbjct: 491 IANIGLANAKMICSEFGC------DTDKMLAAGP---EELSAIQGVGGVIAGAFVDYFSD 541 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVV 677 R++ LLKE++ E+ V TG+++ R + +E + LG V Sbjct: 542 ERHVRIFRDLLKELTIPAEETEQK-EQRFAGVNFVITGSVEHFANRGEIKELIENLGGKV 600 Query: 678 SAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + ++ KT+ +I D + SK +KA +LG+ I++E+ FL +L + Sbjct: 601 TGSVTSKTNYLINNDVTSTSSKNKKANELGIPIISEKDFLEMLGE 645 >gi|183219642|ref|YP_001837638.1| DNA ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909780|ref|YP_001961335.1| DNA ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|190359263|sp|B0SA75|DNLJ_LEPBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781356|sp|B0SKC1|DNLJ_LEPBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|167774456|gb|ABZ92757.1| DNA ligase (NAD+) (contains BRCT domain type II) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778064|gb|ABZ96362.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 671 Score = 418 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 197/717 (27%), Positives = 342/717 (47%), Gaps = 58/717 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E +K + +L +EI H+D YY+ + P+I D E+D L + + PDLA D + P Sbjct: 8 EDPKKRIITLRKEIGRHNDLYYKENAPVITDKEFDILVKELQKLESENPDLA---DVSSP 64 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G +++ K H +P LSLE +N +L +++ + ++LE KI Sbjct: 65 TAQVGSDLSPQFSKFKHKVPVLSLENTYNETELSEWLEKT--------GIEENYSLEWKI 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I + YEKGK RG G G+ V+ ++ I TIP LS + + VRGE++++ Sbjct: 117 DGASILLYYEKGKLTNCVTRGSGGIGDVVTENVKTISTIPHTLSEEMN--LTVRGEIFMT 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS-EIFAK 252 DF N+E +ANPRN A+G +++ +P R L +V+ + +S Sbjct: 175 FADFEEFNEE----YGGKFANPRNLAAGSIKQKDPLDVAKRPLRIYVYDVYFSSSRKGIN 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 ++L ++ FP+ T ++ + + +P+ +DGLV K+D +L+ Sbjct: 231 THKDILSLLKKEKFPLAPDT-TILTGKKLLREIESFRKKKDKMPFPVDGLVIKLDSLNLR 289 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LGE + SPRW + KF + + +ID IGRTG +TP A++ P+++ G +T AT Sbjct: 290 ESLGETSHSPRWARAFKFDALLKESTIEEIDFAIGRTGKVTPRAKVTPISLAGTTVTYAT 349 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN+DYI L A +G +VL+ + GE+IP V + + F P+ Sbjct: 350 LHNQDYINQLGAG-----------IGAKVLISKRGEIIPAVEKVTFPPKT----IFVLPN 394 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +++ T + C ++L +L F S+ NIEGLG++Q+ Sbjct: 395 QCPSCNTKL-------TKVDDSVDFFCTNRHCPERKLNQLIFFCSKKQMNIEGLGERQIQ 447 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 FF+ ++ D++TL++ + + + GFG+ SV ++D+I K + Sbjct: 448 IFFEK----GWVKDIPDLYTLEKYKP----TLLELDGFGEKSVKIIFDAIEKSKEKDFRF 499 Query: 553 FIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + S+G+ VG ++ L + Y S+ + A+ L + +G +A Sbjct: 500 TLPSIGLNEVGPKVTEILIENGYDSWDKLLTLSKSKTAN-----EDLKAIHGIGPRTIEA 554 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKI-QRHKAQEY 669 ++ ++ + V L K + + TG+ + R A + Sbjct: 555 LLTHLKDKETLKLVATLKKLGLKFQADETEKSDLQPFVGQSWCVTGSFENFQPRDLAMDL 614 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 +T+ G +S KT ++ G GSKL+KA +LGVK++ E +FL LL+Q + Sbjct: 615 ITKHGGKKVTSVSSKTTHLLYGPGAGSKLDKATELGVKLVTESEFLDLLKQEGIAID 671 >gi|110833810|ref|YP_692669.1| NAD-dependent DNA ligase LigA [Alcanivorax borkumensis SK2] gi|123345666|sp|Q0VR01|DNLJ_ALCBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110646921|emb|CAL16397.1| DNA ligase (NAD+) [Alcanivorax borkumensis SK2] Length = 777 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 215/617 (34%), Positives = 321/617 (52%), Gaps = 45/617 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 + SL +++ YY P + D+EYD + R + +PDL + + P ++G Sbjct: 10 QAQSLRDQLNDWSYRYYVQDDPAVPDAEYDRVFRALKDLEAQYPDLVTA---DSPTQRVG 66 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + +V H +P LSL+ ++ E+L F RI + I + EPK+DG + Sbjct: 67 DVPLDAFEQVQHEVPMLSLDNAFDDEELWAFDKRIRERLDVSEI--IDYVAEPKLDGLAV 124 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDF 198 ++ YE G+ V AA RGDG +GE+++ R I ++P L N P+ +EVRGEV + F Sbjct: 125 SLLYENGELVRAATRGDGQTGENITVNARTIRSVPLKLRGNDVPKRLEVRGEVVMPHAGF 184 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK-TSEIFAKGQYE 256 LN G K +ANPRNAA+G LR+L+ +R L F+ + + + Sbjct: 185 EELNARQQEAGLKLFANPRNAAAGSLRQLDSRITASRPLEFYAYSMAQLEGWEHPPTHSA 244 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ML +R G VN +R + ++ +Y + R L YDIDG+VYKV+ F Q LG Sbjct: 245 MLDALRDWGLRVNPEIRVCHGVEALLRFYQGILEKREHLDYDIDGVVYKVNRFDWQDDLG 304 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +R+PRW I+HKF ++ T L +D Q+GRTG LTPVARLEPV++GG +++NATLHN Sbjct: 305 FVSRAPRWAIAHKFPAQEELTVLNGVDWQVGRTGALTPVARLEPVHVGGVIVSNATLHNI 364 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L DIR+GD V+V RAG+VIPKVV + R +AQ + PS CP+ Sbjct: 365 DEIQRL-----------DIRIGDTVVVYRAGDVIPKVVRALPERRPANAQGIALPSSCPV 413 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S ++R G RCTGGL C Q+ E +KHF SR A +I+GLG + +D Sbjct: 414 CGSEILR------GHDQVVARCTGGLICGDQRREAIKHFASRRAMDIDGLGDKLVDALVD 467 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 E I AD++ L+ Q + G+ S NL ++ + + L RF+F+ Sbjct: 468 QE----LITTVADLYRLKAEQVAG------LERMGEKSADNLIAALEASKTVGLGRFLFA 517 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +G E A++LA + + ++ VP VG +A+AI F+ Sbjct: 518 LGILQIGEETAKNLADCFGDLDSIRHAPLLLLL----------AVPDVGLEVAKAIGAFF 567 Query: 617 QNPRNICAVEALLKEVS 633 N ++ LL + Sbjct: 568 AESDNEAVIDGLLAQGV 584 Score = 144 bits (362), Expect = 7e-32, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 75/170 (44%), Gaps = 10/170 (5%) Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 + + +G + L ++ + + V + + + Sbjct: 613 GMNLEGIGDKSLDILGSHFRTVTELSAAAAEGAGAEPK---------GVRSGVMTQLAKA 663 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 ++ K+V+ R + + S +E + V TGTL++ R++A++ + QLG Sbjct: 664 LAENDWRGRLQDAEKKVADMAARAPQEMESQPLEGQTWVLTGTLEQFTRNQAKQALQQLG 723 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 A V+ +S+ T +++ G + GSKL KA+ LG+++ +E L LL Q+ Sbjct: 724 AKVAGSVSKNTRMVVAGASAGSKLAKAESLGIEVCDEAALLSLLNQHGID 773 >gi|289804564|ref|ZP_06535193.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 551 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 214/588 (36%), Positives = 335/588 (56%), Gaps = 43/588 (7%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVR 188 E K+DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVR Sbjct: 1 CELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVR 60 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-T 246 GEV++ + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 61 GEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILE 120 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV Sbjct: 121 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 180 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 181 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 240 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + Sbjct: 241 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 289 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 290 PIVFPTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 343 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L K+ + G S N+ +++ K + Sbjct: 344 GDKIIDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAK 393 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + L +VP VG Sbjct: 394 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGI 443 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 ++A + F+ N + LL E + + + + S K +V TG+L ++ R Sbjct: 444 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINAQEIDSPFAGKTVVLTGSLSQMSR 503 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E Sbjct: 504 DDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDE 551 >gi|331002925|ref|ZP_08326438.1| DNA ligase [Lachnospiraceae oral taxon 107 str. F0167] gi|330413218|gb|EGG92592.1| DNA ligase [Lachnospiraceae oral taxon 107 str. F0167] Length = 650 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 183/708 (25%), Positives = 320/708 (45%), Gaps = 62/708 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 ++ + L ++ YY + I+ + EYD L A+ N P Sbjct: 2 DKKQRIRELVDILNKAAKSYYVDAVEIMPNIEYDKLYDELLALEKE----TNVVLSNSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +G E+ L K H P LSL+K ++ DL+ +++ K+D Sbjct: 58 QNVGYEIAGELPKKAHESPMLSLDKTKSVADLKSWLSDNKALL------------SWKMD 105 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I + Y G+ A RG+G GE ++ + IP L + + +RGE I Sbjct: 106 GLTIVLTYRNGELAEAVTRGNGTIGEVITNNAKNFQNIP--LKIEFKGELILRGEAVIKY 163 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 +DF +ND I Y NPRN SG +R+LNP + + +E Sbjct: 164 SDFKRIND-AIEDADAKYKNPRNLCSGSVRQLNPAITKARMVYCNIFNVVRAEDMDFENS 222 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + Q + + I S E +S DGLV +D+ +L ++L Sbjct: 223 KAKQFEWVKNEGFDVVEYKITDSKNIESDIAEFESKIVDNDIPSDGLVLLLDDIALGERL 282 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++ PR ++ K+++++ +T+L I+ RTG++ P+A EPV + G ++ A+LHN Sbjct: 283 GSTSKFPRNAMAFKWSDERQNTKLKYIEWSPSRTGLINPIAVFEPVELEGTTVSRASLHN 342 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 + L + VGD + V +A +IP+V + P CP Sbjct: 343 VSIFEDLM-----------LGVGDEISVYKANMIIPQVYENFTKSNTE-----KIPDVCP 386 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S+ + + L+ C + +++ SRDA NI+GL + L+ F Sbjct: 387 ACGSQTTVKKDNDSKVLL-----CTNPDCQIKHIKQYALMASRDALNIDGLSESTLEKFL 441 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 I+ +D+F L R + +I N+ GFG S L +I++ R+ ++ RF++ Sbjct: 442 SK----GFIKSDSDLFNLSRYKD----EIINMEGFGKRSYEKLIAAIDEARHTNMARFLY 493 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 SLGI +G+ A+ +A+Y+ + ++ N L+ + +G+++A +IVEF Sbjct: 494 SLGITGIGSANAKMIARYFDN---------DLDRIINASKDDLLEIEGIGEVLANSIVEF 544 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLG 674 + N +NI +++L + + E K V TGT++ R++ +E + + G Sbjct: 545 FGNEKNIENIKSLRELLIFETEESE--TKDIFAGKVFVITGTVEHFSNRNELKEIIEKNG 602 Query: 675 AVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 VS +S KT+ +I D + SK +KA++LGV+I++EE FL LL++ Sbjct: 603 GKVSGSVSSKTNFLINNDTTSNSSKNKKAKELGVEIISEEDFLKLLEE 650 >gi|90424785|ref|YP_533155.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB18] gi|123275077|sp|Q211V0|DNLJ_RHOPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|90106799|gb|ABD88836.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB18] Length = 795 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 253/637 (39%), Positives = 361/637 (56%), Gaps = 47/637 (7%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 K ++ LS +A+ EL L EI H++ YYQ P I D+EYDAL+ R +AI F Sbjct: 6 KTAPTDLDTLSKAKAKVELKRLSLEIERHNNAYYQDDAPKISDAEYDALRHRVEAIEAKF 65 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P+L + P K+G KV H++P LSL ++ +++ +F+TR+ RF + Sbjct: 66 PELV---SSDSPTQKVGAAPARGFAKVQHAVPMLSLGNAFSDDEVAEFLTRVRRFLKLDA 122 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNI 181 + EPKIDG +++RYE GK V AA RGDG +GEDV+A +R I IP Sbjct: 123 EQIPAIVAEPKIDGLSLSLRYEHGKLVRAATRGDGFTGEDVTANVRTIKDIPHALAVAEP 182 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240 P E+RGEVY+ K+DFLALN G P+ANPRN+A+G LR+ + +R L FF Sbjct: 183 PAACELRGEVYMLKSDFLALNQRQETAGEPPFANPRNSAAGSLRQKDVAITASRPLKFFA 242 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 + G+ S++ QY ML ++ GF VN + + +++Y ++ R+TLPYDID Sbjct: 243 YAWGEFSDLPEATQYGMLGWLKRAGFTVNPLITLCKSVDDALAFYRKIGEERATLPYDID 302 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+VYKVD Q++LG R+PRW I+HKFA +QA+T L I+IQ+GRTG LTPVARL P Sbjct: 303 GVVYKVDRLDWQERLGFAGRAPRWAIAHKFAAEQATTILNGIEIQVGRTGALTPVARLAP 362 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V +GG ++ NATLHNEDYIK L DI +GD V+V+RAG+VIP++V ++ ++ Sbjct: 363 VTVGGVVVQNATLHNEDYIKSL-----------DIHIGDTVVVQRAGDVIPQIVSVVRDK 411 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R DA+P+ FP FCP C S VRD + A RCTGGL C AQ +ERL+HFVSR A Sbjct: 412 RPEDAEPYEFPKFCPACGSHAVRDEDEGE----AVRRCTGGLICPAQAIERLRHFVSRGA 467 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ----------------------RRQQ 518 F+I G G+ ++ ++ +R PADIF L + Sbjct: 468 FDIAGFGETYVELLYEE----GLVRNPADIFALHSKVDELKAALFRKRESLATQREEKTG 523 Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578 + V NL +I+ RR ++ RFIF LGIRHVG +++L +++ + Sbjct: 524 KKRKSSLSEEKRQYTDVENLLAAIDARRTVAFNRFIFGLGIRHVGEVTSKALVRHFADVK 583 Query: 579 NFAQEIN-NIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F ++ +A WL L V +G+I + ++E Sbjct: 584 AFLDGVDAAALARPGPAWLDLKNVRYIGEITLERLLE 620 Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 78/149 (52%), Gaps = 2/149 (1%) Query: 570 LAKYYLSYQNFAQEINNI-IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +Y + + A + + L +G++ Q++++F++ N V AL Sbjct: 644 LLSHYGNEEKIAGALQAARSEAPGPAFQQLANDSEIGEVATQSLIDFFEETNNRQVVTAL 703 Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 + +V + S I K +VFTG L++ R +A+ +LGA V++ +S KTD++ Sbjct: 704 MDQVQVERPA-AASAKSPISGKIVVFTGALERTTRDEAKAIAERLGAKVASSVSSKTDLV 762 Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + G + GSKL AQ+ GVK++ EE++ + Sbjct: 763 VAGPSAGSKLRDAQKFGVKVLTEEEWAEI 791 >gi|239624075|ref|ZP_04667106.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522106|gb|EEQ61972.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 650 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 193/710 (27%), Positives = 317/710 (44%), Gaps = 65/710 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E + + L + YYQ S+ I+ + EYD L ++ Sbjct: 1 MEDRIQRMKELVSTLRQAGKAYYQESREIMSNFEYDRLYDELCSLEKE----TGIIMSGS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G E+ L K TH P LSL+K ++EDL+ ++ K Sbjct: 57 PTQRVGYEVLSELPKETHESPMLSLDKTKSVEDLQSWLGDQKGLL------------SWK 104 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG I + YE G+ A RG+G GE ++ R +P L+++ + +RGE I Sbjct: 105 MDGLTIVLTYEGGRLTKAVTRGNGEIGEVITPNARVFANVP--LNISYEGQLILRGEAVI 162 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFA- 251 + +DF +N+E+ V Y NPRN SG +R+LN R ++F L + + Sbjct: 163 TYSDFKRINEEIEDV-DAKYKNPRNLCSGSVRQLNSQITAERNVHFEAFALVRADGVDFG 221 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + + +R GF V + + N DGLV D+ + Sbjct: 222 NSRKRQFEWLREQGFEVVHYEEVTA--ENLPEAVNGFAEAVEGNDVPSDGLVLTFDDIAY 279 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 + LG A+ PR I+ K+ ++ TRL I+ RTG++ PVA +PV + G ++ A Sbjct: 280 GEALGRTAKFPRNSIAFKWQDEIRETRLDYIEWSASRTGLINPVAVFDPVELEGTTVSRA 339 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 ++HN ++ L D+ GD + V +A +IP++ D + D P Sbjct: 340 SVHNLSIMEAL-----------DLGQGDTITVYKANMIIPQIADNLTRSGVRD-----IP 383 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C K V + CT C A++++ FVSRDA NI+GL + L Sbjct: 384 KECPVCGGETQI----KQMNDVKSLYCTNP-DCQAKKIKSFTLFVSRDALNIDGLSEATL 438 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F A I ADIF L+ + I + GFG S NL SI N +L Sbjct: 439 EKFI----GAGFIHEYADIFHLEEHKD----AIVEMEGFGQKSYDNLIASIKTASNTTLP 490 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R ++ LGI +G A+ L + + S + + L+ V +G ++AQA Sbjct: 491 RMVYGLGIAGIGLANAKMLCREFKS---------DFEKMRHAQADELVAVDGIGGVLAQA 541 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYV 670 ++++ + +N AV+ LLKE++ + + + E V TG+++ R + QE + Sbjct: 542 WMDYFASEKNNLAVDHLLKELTIE-AEQVETMDAIFEGMTFVITGSVEHFANRKELQEVI 600 Query: 671 TQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLL 718 G + ++ KT +I D SK +KA+ LGV I++EE+FL +L Sbjct: 601 ESRGGKATGSVTAKTTYLINNDVASNSSKNKKAKDLGVPIISEEEFLRML 650 >gi|154498647|ref|ZP_02037025.1| hypothetical protein BACCAP_02637 [Bacteroides capillosus ATCC 29799] gi|150272386|gb|EDM99580.1| hypothetical protein BACCAP_02637 [Bacteroides capillosus ATCC 29799] Length = 656 Score = 416 bits (1068), Expect = e-113, Method: Composition-based stats. Identities = 184/709 (25%), Positives = 313/709 (44%), Gaps = 61/709 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L Q I D+ YY+Y PI+ D +YD L A+ + + P ++ Sbjct: 5 ERMRELIQTIKEADEAYYKYDAPIMADLDYDRLYDELAALERE----TGTILSSSPTQRV 60 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GE+ SL V HS P LS +K ++ D I+++ + L K+DG Sbjct: 61 SGEVLESLTAVRHSRPMLSADKCKSVAD-------IHKYLGGHEA-----VLSWKLDGLT 108 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + +RYE GK V A RGDG GEDV+ +R + +P L + E +EVRGE IS +F Sbjct: 109 LVLRYENGKLVQAITRGDGLQGEDVTHTVRIMKNVP--LVIPCKEPLEVRGEGVISWKEF 166 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 + +PYA+PRN A+G +R+LN ++ F+ + + ++E L Sbjct: 167 ----HALNGTLDEPYAHPRNLAAGSVRKLNAEEVRERGLSFMAFDLISDNLGGSTKWETL 222 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + +GF A Y DGL+++ ++ + + LG Sbjct: 223 RFLAQMGFTTVGYSILAAGASEEAVRQAMDFYQPKEYAYPTDGLIFEFNDLAYGRSLGAT 282 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 M + K+ + + T+ +++ RTG+++ A + V I G + +A LHN D Sbjct: 283 GHHENRMTAFKWPDTRYETKFRRLEVATTRTGMISLTAAFDDVVIDGTTVNHAYLHNLDN 342 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 L + GD + V +A +IP++ + + P CP C Sbjct: 343 FTRLA-----------LGPGDTISVYKANMIIPQIAENKT-----KSGGCPLPDVCPCCG 386 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S +V + + + AC A+ + + HF S+ I+GL +Q L F + Sbjct: 387 STLVVRQSSGGTRQL----YCENEACPARLVRKFVHFCSKTRMEIKGLDEQTLTTFVQH- 441 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 ++ D++ L+R ++ +I GFG+ S L +++++RR +L +FI +LG Sbjct: 442 ---GWVKNYGDLYELERHKE----EILKTPGFGEKSFARLQNAVDERRTCTLNQFIAALG 494 Query: 559 IRHVGAEIARSLAKYYL-SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I VG R L + + S+ F + I D ++ G ++ I +Y Sbjct: 495 IPEVGRHAGRILNRKFGGSWDAFERAIL--------DQFDFTQLEDFGQVMNDNIYCWYS 546 Query: 618 NPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + L ++ + ++ K +V TG L+ R Q + LGA Sbjct: 547 DEEEAKLWRPALNHITFLKEETTMPEAQNNPFAGKTVVATGKLENYTRDGIQMKLLSLGA 606 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 ++ +S+KTD +IVG+N GSKL KAQ LGV + E+QFL +L Sbjct: 607 RPASSVSKKTDYLIVGENAGSKLTKAQTLGVTTLTEQQFLQMLADAGIE 655 >gi|317121135|ref|YP_004101138.1| DNA ligase, NAD-dependent [Thermaerobacter marianensis DSM 12885] gi|315591115|gb|ADU50411.1| DNA ligase, NAD-dependent [Thermaerobacter marianensis DSM 12885] Length = 764 Score = 415 bits (1067), Expect = e-113, Method: Composition-based stats. Identities = 215/622 (34%), Positives = 333/622 (53%), Gaps = 52/622 (8%) Query: 27 EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86 +I +HD YY +P I D+ YDAL R + FP++ P+ P ++GG+ Sbjct: 34 QIRHHDYLYYVLDRPEIDDAAYDALMRELRELEARFPEIV---TPDSPTQRVGGKPAAPF 90 Query: 87 FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146 +V H+ P LSL+ ++ E+L F R+ R + + E KIDG I + YE+G Sbjct: 91 ARVEHAEPMLSLDNAFSREELEAFDQRVRRAVG----GDVAYVAELKIDGLSIALTYEEG 146 Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGEVYISKNDFLALND 203 +FV A RGDG +GEDV+A +R I ++P L +P+ +EVRGEVY++ + F LN Sbjct: 147 RFVRGATRGDGEAGEDVTANLRTIRSLPLRLRDRERQVPQRVEVRGEVYMTFDAFRRLNQ 206 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRY----LNFFVHGLGKTSEIFAKGQYEMLQ 259 E A G+ P+ANPRNAA+G +R+L+P + + G + Q+E+LQ Sbjct: 207 EQEARGQAPFANPRNAAAGSVRQLDPAVTAARSLNLWVYALAGWEGDPAAAPRSQWEVLQ 266 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 +R G PVN R+ + +++Y +E + R LPY IDG+V KVD+ + Q++LG A Sbjct: 267 TLRQWGLPVNPHARRCTSLDELLAYIDEWAARRHQLPYLIDGIVIKVDDLAQQRELGTTA 326 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 RSPRW I++KF ++A TR+ DI + +GRTG LTPVA L+PV + G ++ A+LHN DYI Sbjct: 327 RSPRWAIAYKFPAEKARTRVRDILVSVGRTGALTPVAVLDPVLLAGTTVSRASLHNADYI 386 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439 + +D+R+GD V+V +AGE+IP+VV+++ R D +PF+ P CP C S Sbjct: 387 R-----------EKDVRIGDLVVVHKAGEIIPEVVEVVKEARTGDERPFTMPERCPACGS 435 Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 VVR AA RC + Q ER++HF SRDA +IEGLG ++ Sbjct: 436 PVVRVEGE------AATRCPNAACPAQQL-ERIRHFASRDAMDIEGLGPAVIEQLVAR-- 486 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559 +R AD++ L+ + + G S NL +I+ R L R ++ LGI Sbjct: 487 --GLVRDVADLYRLEAE------PVAQLERMGPKSAANLIAAIDASRARPLRRLLYGLGI 538 Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 R VG +A LA+++ + + + L+ VP +G IA+++ F+++ Sbjct: 539 RFVGERVAGVLARHFGTIHRVMEA----------EPAELMAVPEIGPRIAESVAAFFRDE 588 Query: 620 RNICAVEALLKEVSPSIGRHEK 641 N + L + + + Sbjct: 589 HNRDLIRRLAEAGVRAAAGEPE 610 Score = 146 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 47/75 (62%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + K VFTG L + R +A+ V LG + +SRKTD ++ G+ GSKL KA++LG+ Sbjct: 688 VAGKTFVFTGGLASMTRDEAEALVEALGGRATGSVSRKTDYVVAGEGAGSKLAKARELGI 747 Query: 707 KIMNEEQFLFLLQQY 721 +++E+ FL L+ + Sbjct: 748 PVLDEQAFLRLVGRQ 762 >gi|154484656|ref|ZP_02027104.1| hypothetical protein EUBVEN_02373 [Eubacterium ventriosum ATCC 27560] gi|149734504|gb|EDM50421.1| hypothetical protein EUBVEN_02373 [Eubacterium ventriosum ATCC 27560] Length = 655 Score = 415 bits (1067), Expect = e-113, Method: Composition-based stats. Identities = 190/705 (26%), Positives = 304/705 (43%), Gaps = 63/705 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + L + ++ + YYQ + I+ + EYD L + N P Sbjct: 2 DKSERIKDLVELLNKANKAYYQEANEIMTNFEYDKLYDELVGLEKE----TGMVLSNSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +G ++ L K H+ P LSL+K + L F L K+D Sbjct: 58 VNVGYQVVSQLPKEQHNSPMLSLDKTKEVGALADFA------------GDRKCLLSWKMD 105 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + YE G+ V A RG+G GE ++ + IP + + +RGE I Sbjct: 106 GLTVVLTYENGELVKAVTRGNGLVGEVITNNAKTFKNIPIS--IPYKGRLTLRGEAIIKY 163 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQ 254 +DF +N E+ Y NPRN SG +R+LN R +NF L ++ Sbjct: 164 SDFEQINREIEDAD-SKYKNPRNLCSGSVRQLNSQVTAERNVNFVAFALINADDVDFDNS 222 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E K R + T Y DGLV D+ Sbjct: 223 IEQQYKWMESQGFQVVEYRVVTRNS-MEDAVKYFAGKIQTYDYPSDGLVLMFDDIEYGLS 281 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+ PR I+ K+ ++QA T L I+ RTG++ PVA EPV + G ++ A++H Sbjct: 282 LGTTAKFPRNGIAFKWEDEQAETTLKYIEWSPSRTGLINPVAVFEPVELEGTTVSRASVH 341 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N ++ L+ + GDR+ V +A +IP++ + + D P C Sbjct: 342 NISIMEELE-----------LGSGDRIKVYKANMIIPQISENLTKSGIDD-----LPKEC 385 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C + C A+ ++ FVSR+ NI+GL ++ L+ F Sbjct: 386 PVCGHAT-----EVKAENGIKTLYCPNSQCPAKHVKLFTLFVSRNGMNIDGLSEETLEKF 440 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 A I+ ADIF L R +I GFG S NL DS+ K RN+ L I Sbjct: 441 ID----AGYIKEFADIFHLDRY----YEEIVATPGFGQKSYDNLMDSVEKARNVELSALI 492 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +SLGI ++G+ A+ + K + + NI N LI + +G+I+A+ + Sbjct: 493 YSLGIPNIGSANAKLICKAFNN---------NIEKIRNASVEELIEIDGIGEIMAEKFCQ 543 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQL 673 ++ + NI ++ LLKEV+ E ++ V TG+++ R++ + Y+ + Sbjct: 544 YFADEDNIKKLDNLLKEVNI-AEPEENTTPQNMDGLTFVITGSVEHFANRNELKSYIEKH 602 Query: 674 GAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLF 716 G V+ +S KT+ +I D + SK +KA+QLGV+I+ EE FL Sbjct: 603 GGKVTGSVSAKTNYLINNDAMSASSKNKKAKQLGVEIVTEEVFLE 647 >gi|322652148|gb|EFY48510.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] Length = 571 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 211/606 (34%), Positives = 333/606 (54%), Gaps = 45/606 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ +++ E F R+ K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEIPMLSLDNVFDEESFLAFNKRVQDRL--KSTENVIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L K+ + G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558 Query: 611 AIVEFY 616 + F Sbjct: 559 HVFNFL 564 >gi|225389801|ref|ZP_03759525.1| hypothetical protein CLOSTASPAR_03549 [Clostridium asparagiforme DSM 15981] gi|225044136|gb|EEG54382.1| hypothetical protein CLOSTASPAR_03549 [Clostridium asparagiforme DSM 15981] Length = 673 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 168/717 (23%), Positives = 293/717 (40%), Gaps = 59/717 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E RK+ L ++ + YY + P I D+ YD L + + Sbjct: 1 MNQELIRKQ-QDLTARLNRYRHEYYNLNAPSISDAVYDRLFEELQDLERQ----TGIQMA 55 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P + +G L K H IP LSL+K NI ++ +F+ Sbjct: 56 NSPTSTVGYPAISKLEKTNHPIPLLSLDKEKNIVEVCRFM------------GEHQVMFM 103 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG I + YE G+ + AA RGDG GE V+ RAI IP + + + + GE Sbjct: 104 LKLDGLTIKLTYEGGELLEAATRGDGEVGEIVTHNTRAIGGIP--AHIRYEDRLVITGEA 161 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF 250 +I +DF L ++ + Y N RN A+G +R L+ F + + E Sbjct: 162 FIRPSDFEQLKASLVDNNGETYKNGRNLAAGSVRLLDAKTCMERRLMFMPFTVLEGFENL 221 Query: 251 AKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + + + P ++ T +++ IDG+V ++ Sbjct: 222 PRKSERLKELSALGFTPCKYLVTKRTLTQAEAEDGIKQLQQYARDKDIPIDGIVVTYNDV 281 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + K G + ++ KF + T+L I+ GRTG + PVA PV I G ++ Sbjct: 282 AFAKSCGRTGHHYKDGLAFKFEDDLFETKLQMIEWTPGRTGEIAPVAVFAPVEIDGCEVS 341 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN +I+ L+ + G+R+LV + +IP V D +R + Sbjct: 342 RASLHNLSFIEDLE-----------LMPGNRILVSKRNLIIPHVEDN--LDRGGFVLESA 388 Query: 430 FPSFCPICQSRVVRDL----NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 +P CP C N + C ++L++ HFV + A NIEG Sbjct: 389 YPHRCPCCGEPTRIHETRGRNENGEERTIKTLFCDNAGCETRKLKQFVHFVGKKAMNIEG 448 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 L + L+ I DI+ L + + ++ + GFG+ S L+ +I + Sbjct: 449 LSEATLEKLIGR----GWIHSYLDIYRLDQHKD----ELVRMDGFGERSWQRLWSAIQQS 500 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 RN + ER++ ++ I +G + L + + + F + ++P Sbjct: 501 RNTTFERYVIAMDIPMIGNTASGVLCQVFHGNLDEFRDAVYAGY--------DFRQLPDF 552 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQK 660 GD + I E++ N C E L + + K +V TG ++ Sbjct: 553 GDTLHNNIHEWFSKEENFCIWEELQMMMKIQKPVQPVAENNTQDNPFAGKTIVVTGKVEP 612 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 R + + LGA+ + ++RKT ++ G+ GSKL KA++LG+ ++ ++F + Sbjct: 613 YTRDEMNSLIASLGAIAGSSVTRKTHYLVCGEKAGSKLSKARELGIPVLEPQEFFRM 669 >gi|268610246|ref|ZP_06143973.1| DNA ligase, NAD-dependent [Ruminococcus flavefaciens FD-1] Length = 685 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 176/717 (24%), Positives = 311/717 (43%), Gaps = 66/717 (9%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 + P + +++++ + L + ++ D YY I+ D EYD L + + Sbjct: 28 KATPPKEVNMDKI-NRMKELNELLAKAADSYYNTGVEIMSDHEYDELYDELEKLEKE--- 83 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 ++G E+ SL KV H+ LSL+K +I++L +++ F Sbjct: 84 -TGVILNGSRTQQVGFEVASSLTKVKHTSRMLSLDKTKSIDELTEWLGGHEGFL------ 136 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 K+DG + + ++ G A RG+G +GED++ R I IP + Sbjct: 137 ------SWKLDGLTLVLTFDNGTLTQAVTRGNGETGEDITMNARHIIGIP--AKIPFEGH 188 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 + VRGE + DF +N Y NPRN G +R L+ R +NFF L Sbjct: 189 LVVRGESLMKYKDFERVNSL--IEDGSKYKNPRNLCVGTVRNLDSKVTAERNINFFAFNL 246 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 + E +Q + LGF GV+ ++ E + + DGLV Sbjct: 247 VSADGYESNSFAERIQWLNSLGFQTVYGVKVDSSVLAEKVA--EFEKDIVNNEFPSDGLV 304 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 +D+ + + LGE + +PR ++ K+ ++ A T L +I+ RTG+L PVA +PV + Sbjct: 305 LMLDDVAYGRSLGETSHAPRNGMAFKWRDETADTTLREIEWSASRTGLLNPVAIFDPVEL 364 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G ++ A++HN +K L + +GD + + +A +IP+V++ Sbjct: 365 EGTTVSRASVHNVSIVKQL-----------KLGIGDTLSIYKANMIIPQVLENKTGSASA 413 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + P CPIC + KT C A+ + R +HFV RDA NI Sbjct: 414 -----AIPEVCPICGEKTEI----KTSDDDVETLFCTNKECPAKHIGRFEHFVQRDAMNI 464 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 GL ++ F ++ +D + L R ++ KI + GFG+ S + +++ Sbjct: 465 VGLSTATIETFVSE----GFVKKYSDFYHLDRFRE----KIVTMEGFGERSYQKMQEAVE 516 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 R+ + R ++++GI ++G +R + Y + L + Sbjct: 517 ASRHTEMSRILYAVGIPNIGRAASRLICAEYPDVNAIEKLT----------AEELTAIDG 566 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ- 662 +G+++A V+F+ N N+ LL E+ + S I K V TG++ + Sbjct: 567 IGEVLANDYVKFFANEDNLTEYHELLTELDI-AEPEAVSEDSPIAGKTFVITGSVNIWKN 625 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFL 717 R++ + Y+ +G VS +S KT +I D + +K + A+ L V I+ EE+F L Sbjct: 626 RNELKAYIESMGGKVSGSVSSKTSYLINNDSQSNSTKNKTAKSLNVPIITEEEFREL 682 >gi|160935782|ref|ZP_02083157.1| hypothetical protein CLOBOL_00672 [Clostridium bolteae ATCC BAA-613] gi|158441526|gb|EDP19236.1| hypothetical protein CLOBOL_00672 [Clostridium bolteae ATCC BAA-613] Length = 651 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 186/710 (26%), Positives = 306/710 (43%), Gaps = 64/710 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E + + L + YYQ S+ I+ + EYD L ++ Sbjct: 1 MEDRIQRMKELVSILREAGKAYYQESREIMSNFEYDKLYDELVSLEKE----TGVTLSGS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G E+ L K TH P LSL+K ++EDL++++ K Sbjct: 57 PSQQVGYEILSELPKETHGSPMLSLDKTKSVEDLQEWLGDQKGLL------------SWK 104 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG I + YE+G A RG+G GE ++ R IP L+++ + +RGE I Sbjct: 105 MDGLTIVLTYEEGTLAKAVTRGNGEIGEVITPNARVFANIP--LNISYQGQLILRGEAVI 162 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAK 252 + +DF +N + V Y NPRN SG +R+LN R ++F L K + Sbjct: 163 TYSDFERINSGIEDVD-AKYKNPRNLCSGSVRQLNSQITAERNVHFEAFALVKADGVDFH 221 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 + + G + + + DGLV D+ + Sbjct: 222 NSRKAQFEWLK-GQGFEVVHYEEVDAASLPASVEGFAKAVEGNDIPSDGLVLTYDDIAYG 280 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG A+ PR I+ K+ ++ T L I+ RTG++ PVA EPV + G ++ A+ Sbjct: 281 ESLGRTAKFPRNSIAFKWKDEIRETALSYIEWSASRTGLINPVAVFEPVELEGTTVSRAS 340 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 +HN ++GL+ + VGD + V +A +IP++ + + D P Sbjct: 341 VHNLSIMEGLE-----------LGVGDTITVYKANMIIPQIEENLTRSGVKD-----IPE 384 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C R C A++++ FVSRDA NI+GL + L+ Sbjct: 385 ECPVCGGRT-----EIRKVNDVKSLYCTNPDCQAKKIKSFTLFVSRDALNIDGLSEATLE 439 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F + A I ADIF L+ + I + G G S NL SI N +L R Sbjct: 440 KFIQ----AGFIHEYADIFHLEEHRD----AIVEMEGLGQKSYDNLIASIKTASNTTLPR 491 Query: 553 FIFSLGIRHVGAEIARSLAKYYL-SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 ++ LGI +G A+ L + + + L+ V +G ++AQA Sbjct: 492 MVYGLGIAGIGLANAKMLCREFKYDFDKMRHAGE----------EELVAVDGIGGVLAQA 541 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYV 670 ++++ RN V+ LL E++ + E + E V TG+++ R + QE + Sbjct: 542 WMDYFALGRNNQMVDRLLAELNIEKEQPETAGEAVFEGMNFVITGSVEHFANRKELQELI 601 Query: 671 TQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLL 718 G V+ ++ KT +I D SK +KA++LGV I++EE+FL +L Sbjct: 602 ESKGGKVTGSVTAKTAYLINNDAASNSSKNKKAKELGVPIISEEEFLRML 651 >gi|254442845|ref|ZP_05056321.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235] gi|198257153|gb|EDY81461.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235] Length = 718 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 226/716 (31%), Positives = 351/716 (49%), Gaps = 45/716 (6%) Query: 8 PIEALSIEQA-RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 LS E+ R L L EI+ HDD YY+ + P I D++YDALKR + +PDL Sbjct: 41 DTSKLSEEERGRGRLVELRAEIARHDDLYYRKAAPEISDADYDALKRELHRLEELYPDLQ 100 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 +++IG + + + H P LSLEK + E L F R+ + + Sbjct: 101 DGLL---IVDEIGDDRSGVRGEFRHFAPMLSLEKAYTEEALLSFYDRV---LSQLTFEEL 154 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEII 185 +EPK+DG I++ YE+G+FV A RG+G GEDVS + I +PR + + PE + Sbjct: 155 DCLVEPKVDGMAISVLYERGEFVRAVSRGNGRVGEDVSENVLRIEGLPRRLETESPPERV 214 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP---TDITRYLNFFVHG 242 E+RGEVY+S F LN+ +A G +P+A+PR+ A+G L+ +P ++ + + FF +G Sbjct: 215 ELRGEVYVSFEGFRRLNEARVAAGEEPFAHPRSLAAGSLKLDDPEVVSERSLSIVFFGYG 274 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + E + Q + G PV +R+ +++ EM+ R P+ +DG Sbjct: 275 AFEPVEEAPETQSGFYGLAQSWGIPVLEELRKTRGTEALLAAVREMEERRVLYPFPMDGA 334 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V K+D +Q++LG +PRW +++KFAEK+ TRLL I IQ+GRTG+LTPVA LE + Sbjct: 335 VVKIDRADVQRELGLGTSAPRWAMAYKFAEKRVETRLLGIRIQVGRTGLLTPVAELEEIR 394 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 +GG+ I A+LHN I+ + D+R+GD V ++RAGEVIP VV + + +R Sbjct: 395 LGGSSIRRASLHNGGVIERM-----------DLRIGDVVYLERAGEVIPNVVGVNLAKRK 443 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 + + FP CP C D R C AQ +++HF S A Sbjct: 444 SSSTKYVFPDLCPSCGYAAELDEGR-------VERYCRSSTCPAQAQRKIEHFASSRAVG 496 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEG+G ++ A + AD++ L+ + L I Sbjct: 497 IEGIGPAKIADLMD----AGLVETVADLYLLEVPDLVQAGVG------SEAVARKLVSEI 546 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + R SL R +F LGI VG ++ LA Y FA+ + Sbjct: 547 SGSRAASLWRVLFGLGIPEVGVSRSKKLAAAYGDLAAFARASALDFSPGGRAAEV----- 601 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 G + +A++ + N + L+ E+ + SE+ VFTG L+ + Sbjct: 602 GFGPVAREAVLAYLSLDENRELIGRLV-ELGLGARSEVMDTRSEVAGTIFVFTGALEGLS 660 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A V GA + +S D ++VG PG+KL+KA++LGV+++ E+F LL Sbjct: 661 RKEAMALVEAAGAETRSAVSSACDFLVVGKEPGAKLQKARELGVEVIGLEKFRRLL 716 >gi|254292786|ref|YP_003058809.1| DNA ligase, NAD-dependent [Hirschia baltica ATCC 49814] gi|254041317|gb|ACT58112.1| DNA ligase, NAD-dependent [Hirschia baltica ATCC 49814] Length = 792 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 247/611 (40%), Positives = 364/611 (59%), Gaps = 23/611 (3%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +L+++QAR+ L + I D YY++ P + D++YDAL++ A+ FP L Sbjct: 13 PASLTLDQARERWEELAETIRQADSAYYEHDAPHLSDADYDALRQDLLALESEFPQLVAQ 72 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P +G + + K+TH P LSL+ ++ ED+ +F+ RI R+ + Sbjct: 73 ---DSPSQSVGVKPSGRFAKITHLQPMLSLDNAFSDEDVSEFLGRIRRYLGMDASVELHV 129 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEV 187 T EPKIDG ++ YE G + A RGDG GEDV+A ++ I IP L + PE IE+ Sbjct: 130 TAEPKIDGLSASLLYENGVLISGATRGDGRVGEDVTANLKTIADIPHTLEGDDWPERIEI 189 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY+S DF ALN+ A GRK +ANPRNAA+G LR+L+ +R L FF + G T Sbjct: 190 RGEVYMSHADFAALNEREAAAGRKTFANPRNAAAGSLRQLDVEVTKSRPLRFFAYAWGDT 249 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 S+ F+ Q ++ GF +N ++ A++ ++ YN++ + R++L YDIDG+VYKV Sbjct: 250 SKEFSVNQMGAVEAFSKWGFSINPLMKCADSASQLIEIYNQIANDRASLGYDIDGVVYKV 309 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D Q +LG +R PRW I+HKF +QA+T L +I+IQ+GRTG LTPVA+LEPV +GG Sbjct: 310 DRLDWQARLGFVSRFPRWAIAHKFPAEQATTILREIEIQVGRTGSLTPVAKLEPVTVGGV 369 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++NATLHNED I +DIRVGD+V+++RAG+VIP++V +I ER ++ Sbjct: 370 VVSNATLHNEDEIAR-----------KDIRVGDKVVIQRAGDVIPQIVRVIAEERPSHSK 418 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP+ CP C S VR+++ K G+ A RCTGGL C AQ ERLKHFVSR A +I+GL Sbjct: 419 PYEFPTTCPACGSHAVREMDEK-GEEDARRRCTGGLICPAQAKERLKHFVSRKALDIDGL 477 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT-STTKIENILGFGDVSVTNLYDSINKR 545 G +Q++ FF + P IF L++R + +E GFG S N++ +IN + Sbjct: 478 GAKQIELFFDK----GVVTAPQHIFQLEQRINELNLPPLEEWEGFGKTSSENIFAAINAK 533 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN-NDDWLSLIRVPLV 604 R I RF+ LGI+HVG + LA+ +LS+ F ++ I +L L + + Sbjct: 534 RQIPFARFLIGLGIQHVGQTNSGLLAQNFLSFDAFQTAMHAAIDARPGPAYLKLSSIDRI 593 Query: 605 GDIIAQAIVEF 615 GD + I+ F Sbjct: 594 GDTTLENILNF 604 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 91/175 (52%), Gaps = 2/175 (1%) Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD-WLSLIRVPL 603 +L I +L ++ V + ++A+ Y ++ F E+ + S+ + Sbjct: 617 SLEPNLSGQIPALQMKGVNSAACEAMARRYGNWDEFRNELLKANDTKPASAFKSISNIDG 676 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 +GD+ A+A+++F+ P N + LL E+ + K +VFTG+L+ + R Sbjct: 677 MGDVSAEALIDFFMEPHNQDMLTQLLAEIEIEAA-QAIQTDGAVAGKTVVFTGSLELMSR 735 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+ LGA V++ +S+KTD ++ G GSKL+KAQ LGV ++ E+ +L ++ Sbjct: 736 DEAKSKAQSLGAKVASSVSKKTDYVVAGPGAGSKLKKAQDLGVTVLTEQAWLDMI 790 >gi|193216704|ref|YP_001999946.1| DNA ligase [Mycoplasma arthritidis 158L3-1] gi|254781372|sp|B3PMJ0|DNLJ_MYCA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|193002027|gb|ACF07242.1| DNA ligase [Mycoplasma arthritidis 158L3-1] Length = 665 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 216/710 (30%), Positives = 339/710 (47%), Gaps = 50/710 (7%) Query: 12 LS-IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ++ E+ R E+ L+ +I+ D+ YY P++ D+ YD + + + E+ Sbjct: 1 MTEKEKIRNEVFELQAKINEWDNAYYNLDAPLVEDAIYDREILKLKKLEEQYSSYFSFEE 60 Query: 71 -PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 N P KI + + KVTH P LSL K + E+++KFI I + + F Sbjct: 61 LANSPTQKINAKSSDLFKKVTHDSPMLSLNKAYTEEEIQKFIDNIKKV-----TPTFSFF 115 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 LEPKIDG I+I+Y G+ A RGDG GEDV+ I+ I IP + + +EVRG Sbjct: 116 LEPKIDGLSISIKYRNGQLFQAVTRGDGLVGEDVTENIKQIKNIP--KEIAYQKPLEVRG 173 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSE 248 EVY++ ++F +N + ANPRNAA+G LR+L+ R L+ F++ + + Sbjct: 174 EVYLALSEFEKINLNFQKENKPLMANPRNAAAGTLRQLDKEIVANRNLSAFLYNIVAPED 233 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E ++ LGF V A I SY K ++ TL Y+ DG+V K++E Sbjct: 234 HNIFTILEARDFLKNLGFSVTKEATYAKDLSEINSYIENFKHLKKTLDYETDGVVIKLNE 293 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 LG + P I+ K+ +T L +I I +GRTG++T A LEPV + G+ I Sbjct: 294 LQHYDALGATNKFPHSAIAFKYEPNTTTTVLKNIFITVGRTGLVTYNAELEPVILSGSCI 353 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 T ATL+N YIK L + GD V +K+AGE+IP V+ ++ + F Sbjct: 354 TFATLNNYQYIKDL-----------KLNKGDLVYIKKAGEIIPCVIGLVNKKHEETE--F 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 + CP C S ++ + C + +++ HF S+ A + LG+ Sbjct: 401 NKFLKCPYCNSDLI-------ETDTLLEQYCSNENCPEIRRKKIIHFASKKAMELNSLGE 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + +D F + D + L+ ++ KI ++ FG SV N+ SI + + Sbjct: 454 KNIDVFINE----GLLENVIDFYKLKEKKD----KIMSLERFGTKSVMNILKSIEESKKN 505 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SL+R IF L I+H+G+++A LA L NF D+ SLI +G+ I Sbjct: 506 SLDRVIFGLSIKHIGSKVAYFLASKILKLSNFLD----------FDFDSLISYNEIGEKI 555 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ + N V+ LL K V TGTL + R ++ Sbjct: 556 ISSLKNWVAKEENKNLVKDLLDNDVDLEFIATKKTER-FAQLSFVITGTLSQ-PRSHFEK 613 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + G +S+ +S KT ++VG++ GSKL KA+ L VKI++EE F LL Sbjct: 614 LIKENGGSISSAVSAKTSYLLVGEDAGSKLAKARALNVKILDEEAFNELL 663 >gi|237751760|ref|ZP_04582240.1| NAD-dependent DNA ligase LigA [Helicobacter bilis ATCC 43879] gi|229373126|gb|EEO23517.1| NAD-dependent DNA ligase LigA [Helicobacter bilis ATCC 43879] Length = 686 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 199/737 (27%), Positives = 325/737 (44%), Gaps = 83/737 (11%) Query: 14 IEQAR--KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++ + +E + ++ + YY+ PI D EYD L + Sbjct: 1 MQEIKSHEEYLESIKTLNLYAKHYYELDDPIASDFEYDMLYKAVKLYEENN---IDKIAK 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK----------- 120 + P +IG ++ K H SLE I+N DL +++T++ + Sbjct: 58 DSPTQRIGDKILKDFSKNKHKKRMWSLEDIFNPSDLDEWLTKLSNAIARVQKTTLSPTLF 117 Query: 121 ------KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 N++ F + PK DG + + YE G A RGDG GE V+ + + ++P Sbjct: 118 DTETQIDSINNLAFCISPKYDGMSLNLLYENGILQSATTRGDGEIGEVVTQNAKTLHSLP 177 Query: 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DIT 233 + IE+RGEV +SK +F LN E + +ANPRNAA+G +R+L+ Sbjct: 178 HT--IPFKGSIEIRGEVVLSKENFARLNKEQERNNKALFANPRNAAAGSMRQLDSNLTRE 235 Query: 234 RYLNFFVHGLGKTSEIFAKGQ--------YEMLQKMRCLGFPVNNGVRQANTFHGIVSYY 285 R L+F G+G + Y+ML + GF + + N I Y Sbjct: 236 RNLSFVAWGIGSVDMKELEKYAKRSNLGFYDMLMLLPEFGFSPFRYLERVNA-ESIEREY 294 Query: 286 NEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQ 345 ++ + R P+ +DG V +D+ +LQ +LG ++PR+ ++KF + + I Q Sbjct: 295 QKILNDRDNYPFMLDGFVIVLDDLALQDKLGFTQKAPRFACAYKFPATEVVINIESITPQ 354 Query: 346 IGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKR 405 +GRTGI+TPVA +P + GA I+ ATLHN I +DIR+ D L+ R Sbjct: 355 VGRTGIITPVANFKPTPLDGAFISRATLHNYKEID-----------QKDIRIRDYCLLVR 403 Query: 406 AGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACS 465 +G+VIPK+ ++ R D + P+ CPIC + + + C Sbjct: 404 SGDVIPKITKVLHERRKGDEIKIAKPTHCPICSHELSYED---------IYIYCTNPNCD 454 Query: 466 AQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE 525 A +L HF S+ +I+GLG ++ + I+ DI++L+ Sbjct: 455 AIIKAKLIHFASKKCMDIDGLGSSIIELLVDN----GVIKECKDIYSLKEEDFLRF---- 506 Query: 526 NILGFGDVSVTNLYDSINKR-RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 GF + NL ++I N RFI +LGI H+G ++ LA Y Sbjct: 507 --EGFKEKKAQNLINAIKDSIENREFWRFIHALGILHIGEVASKKLASY----------- 553 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKN 642 + D L + G +AQ+ +F N + + + + P + + N Sbjct: 554 --GYEIFDYDIEKLQEIEGFGKDMAQSFYDF--CIHNKDFINEMQEILKPQLQVKTTQIN 609 Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702 S K V TGT + R + + LGA VS+ +S KTD +I G+ GSKL KAQ Sbjct: 610 TDSIFYQKTCVITGTFA-LSRDSIKAKLESLGAKVSSSISTKTDFLIAGEKAGSKLTKAQ 668 Query: 703 QLGVKIMNEEQFLFLLQ 719 +LG+KI+ + + +L+ Sbjct: 669 ELGIKIIESSELMQILE 685 >gi|114705256|ref|ZP_01438164.1| DNA ligase, NAD-dependent [Fulvimarina pelagi HTCC2506] gi|114540041|gb|EAU43161.1| DNA ligase, NAD-dependent [Fulvimarina pelagi HTCC2506] Length = 821 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 250/639 (39%), Positives = 372/639 (58%), Gaps = 39/639 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 P+E L +A EL L +EI+ HD YY P + D++YDAL+RR AI FP L Sbjct: 4 TPVENLDETEAASELERLAREIAEHDRAYYGDDAPTLSDADYDALRRRNTAIEARFPALI 63 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R+ + P ++G + + KV H++P LSL+ + ED+ F R+ R + +D + + Sbjct: 64 RA---DSPSKRVGAAPSTTFAKVRHAVPMLSLDNAFTEEDVADFAKRVRRIAKLQDTDGL 120 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 T EPKIDG +++RY G+ AA RGDG GEDV+ R + IP V P++ E Sbjct: 121 GITAEPKIDGLSLSLRYVNGELETAATRGDGTVGEDVTPNARTVDDIP-VRIDRAPKVFE 179 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY++ DF ALN+ A G+ +ANPRNAA+G LR+ + +R L FF + G+ Sbjct: 180 VRGEVYMAHADFAALNERQEAAGKPRFANPRNAAAGSLRQKDAEVTRSRPLRFFAYAWGE 239 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 SE+ + Q E++ + GFPVN +++ T ++ +Y ++ R++L YDIDG+VYK Sbjct: 240 ASEVPGETQSEVVAAIGKFGFPVNELMQRFETIDALIEHYRRIEENRASLGYDIDGVVYK 299 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ LQK LG +R PRW I+HKFA ++A+T L ID+ GRTG L P+ARLEPV +GG Sbjct: 300 VDDLRLQKDLGFVSRFPRWAIAHKFAAEKATTVLKGIDVTTGRTGALNPIARLEPVTVGG 359 Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 +++NATLHNEDYI G+DA G+ +R G DIR+GD V+++RAG+VIP+++D++ +R Sbjct: 360 VVVSNATLHNEDYIAGIDADGETIRPSGLDIRIGDTVVIQRAGDVIPQIIDVVAEKRPAG 419 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+PF FP+ C +C S VR++NP+TG+ + CT GL C AQ E LKH VSR AF+IE Sbjct: 420 AKPFVFPTHCAVCGSNAVREMNPRTGRPDSKRHCTAGLTCPAQGREGLKHLVSRSAFDIE 479 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT---------------------- 522 GLG+ ++ F +R PADIFTL + + Sbjct: 480 GLGETLVEALFDE----GLVRQPADIFTLDFEKMKALLEERALAARREREAAEDEAARAE 535 Query: 523 ------KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576 + ++ S N++D I+ RR + LERFIF LGI +VG A++LA+++ Sbjct: 536 GREPKVRGDDRAYDYTKSTQNIFDGIDARRTLPLERFIFGLGIPNVGETTAKALARHFSD 595 Query: 577 YQNFAQEINNIIAHN-NDDWLSLIRVPLVGDIIAQAIVE 614 ++ W+ L + +G+ + I++ Sbjct: 596 VAALIGGVDAAEKGKPGSAWIELSALKGIGEKSFEQILD 634 Score = 183 bits (464), Expect = 1e-43, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 4/157 (2%) Query: 568 RSLAKYYLSYQNFAQEINNIIA-HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 +SL + Y I +L+L +G + Q+++ F+ N AV+ Sbjct: 661 KSLKERYGDASRIRAAILEAKQTAPTQAYLNLTTDSDIGTVATQSLINFFAEDHNRQAVD 720 Query: 627 ALLKEVSPSIGRH---EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 ALLK + + S + +VFTG+L+K+ R A+E LGA VS +S Sbjct: 721 ALLKAGVSTTNERMTAVASNDSPVSGLTIVFTGSLEKMTREAAKEMAEGLGAKVSGSVSN 780 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 KTD+++ G GSKL KA +LG+++++E+ + + + Sbjct: 781 KTDLVVAGPGAGSKLSKASELGIEVIDEDAWFKRIGR 817 >gi|297183498|gb|ADI19628.1| NAD-dependent DNA ligase (contains brct domain type II) [uncultured delta proteobacterium HF0770_45N15] Length = 655 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 202/699 (28%), Positives = 346/699 (49%), Gaps = 53/699 (7%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 L Q + + YY + D EYD L + +A+ + + PL + Sbjct: 6 DLVQRVHDLNHDYYC-DVATVPDVEYDGLVSQLNALEAQVGESLANV---SPLLQFAANQ 61 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 + H+IP LSL +++ +++ ++ + + +++ +T E KIDG I++ Sbjct: 62 QEAFPSRRHAIPMLSLGNLYSEQEILEWDENLRKPLGV---STLSYTCELKIDGLAISLI 118 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 YEKG+ A RGDG +G++V+A +R IP +P L + +EVRGEV++SK+ F LN Sbjct: 119 YEKGRLATAVTRGDGTAGDEVTANLRTIPELPVALPEPL--DLEVRGEVFLSKDAFEKLN 176 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262 + NPRNAA+G LR L+ +++ V S I L ++ Sbjct: 177 QRRATQNEPLFRNPRNAAAGTLRTLDTSEV-SRRRLGVFVYACVSGIETPQHSAALDQLV 235 Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322 L FPVN A + ++ Y + + S LPY +DG+V KVD +S Q+QLG A+SP Sbjct: 236 KLDFPVNPERHFAASITEVLEYCRKWGTHHSELPYAVDGVVLKVDAYSTQRQLGVTAKSP 295 Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382 RW ++ KF+ +QA +R+ I++ +GRTG++TP+A ++PV + G ++ ATLHN + ++ L Sbjct: 296 RWAVACKFSTEQAESRIRGIELGVGRTGVITPIALIDPVELNGTMVGRATLHNFEQVRNL 355 Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442 D+ +GD V +++ GE+IPK+V + + R P+A P P CP C +V Sbjct: 356 -----------DLHLGDLVTLEKGGEIIPKIVSVARSARFPNALPILPPETCPACDDKVS 404 Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502 + CT C Q ER+ HF SR A ++E +G + + Sbjct: 405 HEDGE------VDWLCTNP-DCPDQVRERVLHFCSRRALDVETIGPALVVQLLER----G 453 Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 +R PAD+F L + + G S N+ + + ++ L + LGI +V Sbjct: 454 LVRTPADLFRLNVE------ALSQLERMGKKSAENVVSGLERSKHCRLAALLHGLGIPNV 507 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 G + AR LA+ + + Q + L+ + +G +IA ++ F+ + R Sbjct: 508 GEKTARLLARRFGTLQTLQTVQH----------EQLLAIDEIGPVIANSVASFFADSRQQ 557 Query: 623 CAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 V+ LL + K +V TG L + R ++ + + GA +++ + Sbjct: 558 ALVDDLLAVGVCPQEEAILEADNPHFSGKMVVLTGALSE-ARDVWKQRLEEAGANITSAV 616 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNE---EQFLFL 717 S+KTD+++ G+N GSKLEKA + G+++++E + +L L Sbjct: 617 SKKTDLVLAGENAGSKLEKAHKFGIQVIDETTAQTWLNL 655 >gi|315652468|ref|ZP_07905453.1| DNA ligase [Eubacterium saburreum DSM 3986] gi|315485257|gb|EFU75654.1| DNA ligase [Eubacterium saburreum DSM 3986] Length = 649 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 180/708 (25%), Positives = 319/708 (45%), Gaps = 64/708 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 RK + L + ++ YY + I+ + EYD L ++ N P Sbjct: 2 DKRKRIKELVEILNKAAKSYYVDAVEIMPNIEYDKLYDELVSLEKE----TNVVLSNSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +G E L K H P LSL+K ++ +L ++ K+D Sbjct: 58 QNVGYETASELPKKAHESPMLSLDKTKSVAELEDWLGDNKALL------------SWKMD 105 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I + Y G+ V A RG+G GE ++ + +P L + + +RGE I Sbjct: 106 GLTIVLTYRGGELVEAVTRGNGIIGEVITNNAKNFQNVP--LRIEYKGELILRGEAVIKY 163 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 +DF +ND + Y NPRN SG +R+LNP R + F V + + I + Sbjct: 164 SDFKRINDSITDAD-ARYKNPRNLCSGSVRQLNPAVTRERKVYFNVFNVVRADNIDFENS 222 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 + + + + +S + DGLV +D+ +L ++ Sbjct: 223 KAKQFEWAKNEGFDVVEYK-FTQRASLADDIAKFESKIAENDIPSDGLVLLLDDIALGER 281 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++ PR ++ K+++++ +T+L I+ RTG++ PVA EPV + G ++ A+LH Sbjct: 282 LGSTSKFPRNAMAFKWSDERQTTKLKYIEWSPSRTGLINPVAVFEPVELEGTTVSRASLH 341 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N + L + VGD + V +A +IP+V + + P C Sbjct: 342 NVSIFEELM-----------LGVGDEISVYKANMIIPQVYENLTKSNTE-----KIPKIC 385 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + ++ L+ C + +++ SRDA NI+GL + L+ F Sbjct: 386 PACGRDTTIKKDNESKVLL-----CTNPDCQIKHIKQYALMASRDALNIDGLSESTLEKF 440 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 I+ +D+F L + + +I N+ GFG S L ++++ +N ++ RF+ Sbjct: 441 LSK----GFIKSDSDLFRLDKFKD----EIINMEGFGKRSYEKLIAALDEAKNTTVSRFL 492 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +SLGI +G+ A+ +AKY+ + +I + L + +G+++A +I + Sbjct: 493 YSLGIAGIGSANAKMIAKYFDN---------DIDRIISASKDDLRDIEGIGEVLAGSIED 543 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQL 673 F+++ +NI VE+L K + E + K V TG+L R++ +E + + Sbjct: 544 FFKSEKNIENVESLRKIL--KFETEESGGGDKFAGKVFVITGSLTHFSNRNEMKELIEKN 601 Query: 674 GAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G VS +S KT+ +I D + SK +KA++LGV+I++EE FL LL+ Sbjct: 602 GGKVSGSVSSKTNFLINNDTGSNSSKNKKAKELGVEIISEEDFLKLLE 649 >gi|331086070|ref|ZP_08335153.1| DNA ligase [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406993|gb|EGG86498.1| DNA ligase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 653 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 178/710 (25%), Positives = 307/710 (43%), Gaps = 65/710 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +EQ ++ + L Q ++ YYQ +K I+ + EYD L + N Sbjct: 1 MEQKKQRMQELVQLLNQAGKAYYQDAKEIMSNHEYDRLYDELLVLEQE----LGITMANS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +G E+ L K H P LSL+K + L++F+ + K Sbjct: 57 PTVNVGYEVLSELPKERHEKPMLSLDKTKETDRLKEFV------------GEKKAVISWK 104 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG I + YE G+ A RG+G GE ++ + +P L + + +RGE I Sbjct: 105 LDGLTIVLTYENGELKKAVTRGNGEVGEVITNNAKVFQNVP--LRIAYRGELILRGEAVI 162 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 DF +N+E+ V Y NPRN SG +R+LN R + F+ L K + + Sbjct: 163 GYRDFEKINEEIEDV-DAKYKNPRNLCSGSVRQLNNEITARRNVQFYAFSLVKADGVDFQ 221 Query: 253 GQYEML-QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + + ++ GF V + DGLV D+ + Sbjct: 222 NSRNIQLEWLKEQGFDVVEHYEVTKDTLEERVRF--FAEHIEENDIPSDGLVLTYDDIAY 279 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 + LG A+ PR + K+A++ T L +I+ RTG++ PVA +PV + G ++ A Sbjct: 280 GQSLGSTAKFPRDSFAFKWADEIRETTLREIEWSPSRTGLINPVAIFDPVELEGTTVSRA 339 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 ++HN ++ L+ + +GD + V +A +IP++ + + P Sbjct: 340 SVHNLSIMEELE-----------LGIGDTIQVYKANMIIPQIAENLTRSGMD-----PVP 383 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C C A+ ++ FVSRDA NI+GL + L Sbjct: 384 ECCPACGGET-----EIRQVSDTKTLYCTNPECGAKHIKAFSLFVSRDALNIDGLSEATL 438 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F I +DIF L+R +I ++ GFG+ S NL DSI K R +L Sbjct: 439 EKFITR----GFIHHFSDIFHLERH----GEEIRSMEGFGEKSYKNLQDSIEKARTTTLP 490 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + I+ LGI ++G A+ + + + ++ D +L + VGD+IA+A Sbjct: 491 KLIYGLGIANIGLSNAKMICRAFD---------YDVEKMLQADVEALNEIQGVGDVIARA 541 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYV 670 V+++ + LL+EV + V TG+++ R++ +E + Sbjct: 542 FVDYFAVEDHREEFFRLLEEVKIPEEETTQEEQ-IFAGMNFVITGSVEHFANRNEVKEVI 600 Query: 671 TQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G V+ ++ KT+ +I ++ SK +KA++LG+ I++E+ FL ++ Sbjct: 601 ESKGGKVTGSVTSKTNWLINNDVESTSSKNKKARELGIPIISEDTFLKMI 650 >gi|225028066|ref|ZP_03717258.1| hypothetical protein EUBHAL_02336 [Eubacterium hallii DSM 3353] gi|224954614|gb|EEG35823.1| hypothetical protein EUBHAL_02336 [Eubacterium hallii DSM 3353] Length = 653 Score = 411 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 176/718 (24%), Positives = 308/718 (42%), Gaps = 80/718 (11%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + L + ++ YYQ + + + EYD L A+ P Sbjct: 2 DKQARMKKLVEVLNQASKAYYQEDRELFSNKEYDELYDELQALEAE----TGIVMSQSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +G E+ L K TH P LSL+K + E LR ++ L K+D Sbjct: 58 QNVGYEVLSELEKETHESPMLSLDKTKSPEALRDWL------------GEKEGLLSWKMD 105 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y G A RG+G GE ++ R +P + + +RGE I Sbjct: 106 GLTVVLTYRDGVLQKAVTRGNGVVGEVITNNARVFKNLP--AKIPFAGEVVLRGEAVIKY 163 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 +DF +N+ + V Y NPRN SG +R+LN R + FF L K + Sbjct: 164 SDFKKINEGIEDVD-ARYKNPRNLCSGSVRQLNNEVTAKRNVFFFAFALVKAEGRELENS 222 Query: 255 YEMLQ-KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E ++ LGF + R I+ + DGLV D+ + Sbjct: 223 VESNMLWVQNLGFEIVPYKRV--DRENIMGEIQNFSEKIVENDFPSDGLVLIYDDIAYGI 280 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG A+ PR I+ K+A+++A TRLL I+ RTG++ P+A EPV + G ++ A+L Sbjct: 281 SLGRTAKFPRNSIAFKWADEEAETRLLHIEWSPSRTGLINPIAVFEPVELEGTTVSRASL 340 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN ++GL+ + D + V +A +IP++ + + + Sbjct: 341 HNISIMEGLE-----------LGENDHIKVYKANMIIPQIAENLT-----KSGTCQPIEH 384 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C + CSA++++ H+VSRDA NI+GL + L Sbjct: 385 CPACGGAT-----EVRIENNVKTLYCVNPYCSAKKVKLFSHYVSRDAMNIDGLSEATLMK 439 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + + D++ L++ ++ +I + G+G+ S NL SI K R+ L RF Sbjct: 440 MIEQ----GFLSELNDLYNLEQYKE----QIIAMDGYGEKSYNNLMQSIEKSRDTQLFRF 491 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 ++ +GI +VG+ AR L +++ + ++ + ++ +G++IA ++ Sbjct: 492 VYGIGILNVGSSNARLLCRHFGN---------SLENLRGASVEEMTQIDGIGEVIATSVH 542 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKI-QRHKAQEYV 670 ++++N N +E LL + + +K V TGT++ R + +E + Sbjct: 543 DYFENEHNQKLLEKLLPYLHFEEENVSAGGEQEQSLLDKTFVITGTVEHFANRKELKEKI 602 Query: 671 TQLGAVVSAILSRKTDIIIVGDNP---------GSKLEKAQQLGVKIMNEEQFLFLLQ 719 LG V+ +S+KTD +I DN ++LG+ ++ EE+FL +++ Sbjct: 603 ESLGGKVTGSVSKKTDYLINNDNMSSSSKNKKA-------KELGIPVITEEEFLSMIE 653 >gi|331092462|ref|ZP_08341286.1| DNA ligase [Lachnospiraceae bacterium 2_1_46FAA] gi|330401202|gb|EGG80794.1| DNA ligase [Lachnospiraceae bacterium 2_1_46FAA] Length = 653 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 176/712 (24%), Positives = 315/712 (44%), Gaps = 65/712 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + +K + L ++ YYQ + I+ + +YD L + N Sbjct: 1 MTDKKKRMQELIALLNEAGKAYYQGATEIMSNFQYDKLYDELAELEKE----LNVTLSNS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +G E+ L K H P LSL+K + L++F+ + + K Sbjct: 57 PTVNVGYEVLSELPKERHEKPMLSLDKTKEVSSLKEFL------------GNQKAVISWK 104 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG I + Y G+ A RG+G GE ++ + IP L ++ + +RGE I Sbjct: 105 LDGLTIVLTYRDGELQKAVTRGNGEVGEVITNNAKVFKNIP--LHISYKGELVLRGEAVI 162 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 DF +N+E+ Y NPRN SG +R+LN R + FF L K + K Sbjct: 163 GYKDFERINEEIEDAD-AKYKNPRNLCSGSVRQLNNEITAKRNVRFFAFSLVKAEGVDFK 221 Query: 253 G-QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + E ++ + GF V + K ++ + DGLV D+ + Sbjct: 222 NSRNEQMRWLSQQGFDVVEHEEVTSADIEEKVEMFAHKIEKN--DFPSDGLVLVYDDIAY 279 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 + LG A+ PR + K+A++ T L +I+ RTG++ PVA + V + G ++ A Sbjct: 280 GQSLGTTAKFPRDSFAFKWADEIRETTLREIEWSPSRTGLINPVAIFDSVELEGTTVSRA 339 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 ++HN ++ L+ + +GD + V +A +IP++ + + D Sbjct: 340 SVHNISIMEELE-----------LGIGDTIQVYKANMIIPQIAENLTRSGVQDIPDV--- 385 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 V R+ A C A++++ F SRDA NI+G+ + L Sbjct: 386 -------CPVCREKTEIRKVNNAKALYCTNPECQAKRIKSFALFASRDALNIDGMSEATL 438 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F I+ ADIF + R ++ KI+++ GFG+ S L S+ K R +L Sbjct: 439 EKFILE----GFIKEYADIFHMDRYEE----KIKSMEGFGEKSYNKLQASVEKARTTTLP 490 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + I+SLGI ++G A+ + K + + N N L ++ VG++IA Sbjct: 491 KVIYSLGIANIGLANAKMICKEFQN---------NADEIMNATPERLNQIDGVGEVIAGT 541 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYV 670 VE++ ++ + LL+E++ + + + V TG++ R++ +E + Sbjct: 542 FVEYFSVEKHRKEFQNLLRELTI-PKESAEEGKQIFDGIQFVITGSVNHFANRNEVKEVI 600 Query: 671 TQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G V+ ++ KT+ +I D + SK +KA++LG+ I++EE+FL +L++ Sbjct: 601 ESKGGKVTGSVTSKTNYLINNDTASTSSKNKKARELGIPIISEEEFLEMLRK 652 >gi|197294788|ref|YP_001799329.1| NAD-dependent DNA ligase [Candidatus Phytoplasma australiense] gi|254781387|sp|B1VAY1|DNLJ_PHYAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|171854115|emb|CAM12104.1| NAD-dependent DNA ligase [Candidatus Phytoplasma australiense] Length = 670 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 213/696 (30%), Positives = 372/696 (53%), Gaps = 45/696 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++E K++ L +++ + YY S P + D +YDAL + + FP P Sbjct: 2 INLELIEKKIKDLTNQLNEANYEYYVKSNPKLTDQQYDALLKELLVLEKKFPQFTL---P 58 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P KIGG + V H+ +SL +N+++L+ F RI + +S E Sbjct: 59 YSPTLKIGGFVEKKFSTVKHTSAMMSLANAFNLKELKAFYDRIAK-----KFSSFSMVSE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG ++++Y+KG A RG+G GE+++ ++ I +P L L P +EVRGE+ Sbjct: 114 LKIDGVAVSLKYKKGILFQALTRGNGVWGEEITKNVQTIKQVP--LKLTQPLDLEVRGEI 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 Y+S + F LN + + ++NPRNAASG +R+LN + + + + + Sbjct: 172 YLSNSSFQKLNQQRKIAQQPLFSNPRNAASGTIRQLNSSIVAQRNLSIFIYSIQNPYLLK 231 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q E L + LGF VN + +++F + E++ ++ L Y+ DG+V K++E +L Sbjct: 232 STQEETLTFLASLGFSVNPYYKCSSSFEELEIKIQELEKLQQNLDYNTDGVVVKINELNL 291 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +G+ +SP+W I++KFA K + + + +I Q+GR+G+LTPV ++ PV + G+L++ Sbjct: 292 HDSIGKTTKSPKWAIAYKFATKNSESVVQEIIFQVGRSGMLTPVCKIIPVMVDGSLVSKV 351 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 LHN DYI +DIR+ D V V +AG VIP++ ++I ++R D++PF+ Sbjct: 352 VLHNYDYI-----------CKKDIRLKDYVQVHKAGSVIPEIKEVIKSKRPSDSKPFAMI 400 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C S + ++ C Q++++L HFVS++A +I+ LG Q L Sbjct: 401 TQCPSCHSLLNKNKGE-------VDYFCINKNCLEQKIQKLIHFVSKNAMDIDTLGNQTL 453 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 FF + I P+DI+ L+ + ++ I GFG V N+ S+ K +N SLE Sbjct: 454 ITFFNQK----LIENPSDIYLLK----NNLDVLQKINGFGAKKVQNILTSVEKSKNKSLE 505 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 +F LGI+HVG ++++ L K++ S + + ++ S+ +P +G+ IA + Sbjct: 506 NVLFGLGIKHVGLKVSQVLTKHFDSIEILQKTTL-------ENLESIKSIPEIGEKIALS 558 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEY 669 + +++QNP ++ + L + + + NKK+V TG+LQ R + ++ Sbjct: 559 LQKYFQNPLHLEEITKLKQLGVSFKSTTTSQIKAPNFFTNKKVVLTGSLQNYTRSQIKKL 618 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 + Q GA+++ LS +T ++I G NPGSKL+KA+ L Sbjct: 619 LIQKGAIINDALSSQTHLLITGANPGSKLQKAKTLN 654 >gi|153855784|ref|ZP_01996785.1| hypothetical protein DORLON_02806 [Dorea longicatena DSM 13814] gi|149751911|gb|EDM61842.1| hypothetical protein DORLON_02806 [Dorea longicatena DSM 13814] Length = 647 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 176/708 (24%), Positives = 306/708 (43%), Gaps = 66/708 (9%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L ++ YYQ ++ I+ + EYD L + N P +G Sbjct: 1 MKELVSLLNKASRAYYQEAQEIMSNYEYDRLYDELKELEDE----LGITLSNSPTVNVGY 56 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 E+ L K H P LSL+K +E+L+ F+ + K+DG + Sbjct: 57 EVVSELPKERHESPMLSLDKTKEVEELKNFV------------GDQKVLISWKMDGLTVV 104 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + Y GK A RG+G GE ++ + +P + + + +RGE I DF Sbjct: 105 LTYRDGKLYKAVTRGNGEVGEVITNNAKVFKNVP--VQIAYQGELILRGEAVIGYKDFEK 162 Query: 201 LNDEMIAVGRKPYANPRNAASGILRR-LNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259 +N E+ V Y NPRN SG +R+ N R + F+ L + + + Sbjct: 163 INQEIEDV-DARYKNPRNLCSGSVRQLNNQITAKRNVMFYAFTLVQADGVDFQNSRACQM 221 Query: 260 -KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ GF + S S + DGLV D+ + + LG Sbjct: 222 EWLKSQGFTTVEYYMVTRDTVE--DEVAKFSSKISENDFPSDGLVLTYDDIAYGRSLGRT 279 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 A+ PR + K+ ++ T L +I+ RTG++ PVA +PV + G ++ A++HN Sbjct: 280 AKFPRDSFAFKWQDEIRETVLREIEWSPSRTGLINPVAIFDPVELEGTTVSRASVHNISI 339 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 ++ L+ + +GD++ V +A +IP++ + + D C+ Sbjct: 340 MEELE-----------LGIGDKIEVYKANMIIPQIAENLTRSGVKDIP----------CK 378 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 V + A C A+ ++ FVSRDA NIEGL + L+ F Sbjct: 379 CPVCQGETKIRQVGNAKALYCMNPECQAKHVKSFALFVSRDALNIEGLSEATLEKFISR- 437 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I ADIF L + ++ KI+ + GFG+ S L +SI K R +L R I+SLG Sbjct: 438 ---GYIHTFADIFHLDQYKE----KIQKMEGFGEKSYKKLTESIEKARTTTLPRVIYSLG 490 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I +G A+ + + ++ +++ + L + VG+++A+A V ++ + Sbjct: 491 IAGIGLANAKVICRE------LKYDVESLLKVSE---EELNEIQGVGEVLAKAFVGYFAD 541 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVV 677 +++ LL E++ + E V TG+++ R + +E + LG V Sbjct: 542 AKHVENFRRLLNELTIP--KETVTKQQIFEGVNFVITGSVKHFANRGEVKELIESLGGKV 599 Query: 678 SAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 + ++ KT+ +I D + SK +KA +LG+ I++EE FL L+ Q T Sbjct: 600 TGSVTSKTNYLINNDVTSTSSKNKKANELGIPIISEETFLELVNQEET 647 >gi|188584367|ref|YP_001927812.1| DNA ligase, NAD-dependent [Methylobacterium populi BJ001] gi|254781367|sp|B1Z9P1|DNLJ_METPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|179347865|gb|ACB83277.1| DNA ligase, NAD-dependent [Methylobacterium populi BJ001] Length = 814 Score = 408 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 253/629 (40%), Positives = 374/629 (59%), Gaps = 31/629 (4%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 + + +E+LS + A+ + L + I + YY P + D+EYDAL++ +AI Sbjct: 3 RTQASAAVESLSEDAAQARHAELSRAIERANHLYYNEDAPELTDAEYDALRQELEAIEAR 62 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP L + + +G + + KV H++P LSL + ED+ +F+ R+ RF Sbjct: 63 FPALTGTTEA---SAGVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNLT 119 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-N 180 + + FT EPKIDG +++RYE G+ V AA RGDG GE+V+A + IP LS + Sbjct: 120 AEEPVAFTAEPKIDGLSLSLRYEAGRLVTAATRGDGEVGENVTANALTVEDIPATLSGKD 179 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 IPE++EVRGEVY+S DF +N A G+ +ANPRNAA+G LR+L+P +R L FF Sbjct: 180 IPEVLEVRGEVYLSHEDFAGINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFF 239 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ SE F Q +L++ R G PVN + + ++++Y +++ R+ L YDI Sbjct: 240 AYAWGEVSEPFTDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRAIEAERAGLGYDI 299 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD+ Q++LG +R+PRW ++HKFA ++A T LL IDI +GRTG L P+ARL+ Sbjct: 300 DGVVYKVDDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARLK 359 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG +++NATLHNE Y++G+ A G+ +R GRDIRVGD V+V RAG+VIPKV+D++++ Sbjct: 360 PVTVGGVVVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVMDVVLD 419 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R DA P+ FP CP C SR VR+LNP+T KL A RCTGGL C AQ +ERLKHFVSR+ Sbjct: 420 KRPADAVPYVFPETCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRN 479 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR---------------------QQ 518 F++EG G+ ++ F+ A ++ PAD+F L+ + Sbjct: 480 GFDLEGFGQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARREALSAQRRAEGEP 535 Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578 + D ++ NL S+ RR I+L RF+F+LGI +G A++LAK + Sbjct: 536 APKKPTKKKGEEEDKAIKNLLASLEARRKIALNRFLFALGIPQIGESTAKALAKRFPDMP 595 Query: 579 NFAQEINNII-AHNNDDWLSLIRVPLVGD 606 + DWL L +P +G Sbjct: 596 ALMAALEAATREQAGRDWLELSALPRIGP 624 Score = 180 bits (456), Expect = 7e-43, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 83/154 (53%), Gaps = 2/154 (1%) Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL-VGDIIAQAIVEFYQNPRNICAVE 626 ++ +Y S + + + D L +G + ++++F+ P N AV Sbjct: 661 EAVLAHYGSEEEADAALERAASQRPGDAYRLFADDGEIGPVATDSLIQFFSEPHNDAAVR 720 Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 ALL+EV + ++ K +VFTGTL+K+ R +A+ +LGA VS +S KTD Sbjct: 721 ALLEEVGTEPLAATTSAAAF-AGKTVVFTGTLEKMTRSEAKATAERLGAKVSGSVSAKTD 779 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +++ G GSKL+ A++ GVK+++E+ +L +L + Sbjct: 780 LVVAGPGAGSKLKDAERHGVKVVSEDDWLAMLAE 813 >gi|260438468|ref|ZP_05792284.1| DNA ligase, NAD-dependent [Butyrivibrio crossotus DSM 2876] gi|292809057|gb|EFF68262.1| DNA ligase, NAD-dependent [Butyrivibrio crossotus DSM 2876] Length = 649 Score = 408 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 187/709 (26%), Positives = 318/709 (44%), Gaps = 66/709 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + L ++ YY + I+ + EYD L + + P Sbjct: 2 DKSERIKELIDILNEAGKVYYSGTDEIMSNFEYDRLYDELVELENE----TGIHMSGSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +K+G E L K H P LSL+K +++ L +F L K+D Sbjct: 58 SKVGYETLSELPKENHEKPMLSLDKTKSVDTLAEFA------------GVHKCLLSWKLD 105 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y G+ V A RG+G+ GE ++ + IP L++ + +RGE I+ Sbjct: 106 GLTVVLTYNNGELVKAVTRGNGYVGEVITPNAKVFKNIP--LTIPYKGELILRGEAIITY 163 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 +DF +ND +I Y NPRN SG +R+LN R + L K I Sbjct: 164 SDFNRINDSIIDDAE-KYKNPRNLCSGSVRQLNNEITAKRNVKLIAFALIKAEGINFHNS 222 Query: 255 -YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E + + GF V R+ + S + DGLV D+ + Sbjct: 223 VEEQFEFLEKQGFEVVE--RKIVDGTTVHSAVQYFSDKIKENDFPSDGLVMIYDDINYGL 280 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG A+ PR I+ K+ ++ A T L +I+ RTG++ PVA +PV + G +T A++ Sbjct: 281 SLGTTAKFPRNAIAFKWKDETALTTLREIEWSASRTGLINPVAIFDPVELEGTTVTRASV 340 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN +K L + +GD++ V +A +IP++ + I + P Sbjct: 341 HNVSIVKEL-----------KLGIGDKITVYKANMIIPQIAENITSSGTA-----VIPDK 384 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C + A+ CSA+ ++R +HF R+A NIEG+ Q LD Sbjct: 385 CPVCGENTQIIES-----AGASFLYCVNKDCSAKHIKRFEHFCERNALNIEGISMQTLDK 439 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F + I+ DI+ L R ++ +I ++ GFG S N+ +SIN R L Sbjct: 440 FIEC----GYIKEFEDIYHLDRYEE----RIVSMDGFGKKSYDNMIESINNSRTAMLANV 491 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I+ LGI +G AR + +Y+ +++ N L+ + +G+++A + V Sbjct: 492 IYGLGIDGIGLAGARLICRYFE---------DDVYKVINATKDELLLIDGIGEVLADSYV 542 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQ 672 +++ + +N E LLKE+ + + E+N +S + K V TG+L R + + + Q Sbjct: 543 KYFSDEKNRKEFELLLKEL--HLVKEERNTNSPVSGKTFVITGSLNHYANRDELKAVIEQ 600 Query: 673 LGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G + +S KTD +I D + SK +KA++LG+ +++E+ F+ L+ Sbjct: 601 NGGKTTGSVSAKTDYLINNDLTSNSSKNKKAKELGIPVISEDDFIKFLE 649 >gi|220920535|ref|YP_002495836.1| DNA ligase, NAD-dependent [Methylobacterium nodulans ORS 2060] gi|254781366|sp|B8ICE5|DNLJ_METNO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219945141|gb|ACL55533.1| DNA ligase, NAD-dependent [Methylobacterium nodulans ORS 2060] Length = 829 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 266/644 (41%), Positives = 374/644 (58%), Gaps = 50/644 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E ++ QAR+ SL EI+ HD Y+ PII D+EYDAL+RR +AI FP+LA Sbjct: 10 PVEEMTAAQAREAHESLSAEIAEHDRRYHGEDAPIISDAEYDALRRRLEAIEERFPELAG 69 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + +G + + KV H++P LSL + E++ +F+ R+ RF + Sbjct: 70 TGAA---SVSVGAKASDKFAKVRHAVPMLSLGNAFAEEEITEFVERVRRFLGLPASEPLA 126 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186 FT EPKIDG +++RYE G+ V AA RGDG GEDV+A +R I IP L+ + PEI E Sbjct: 127 FTAEPKIDGLSLSLRYEGGRLVTAATRGDGEVGEDVTANVRTIREIPHELAGDDVPEICE 186 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245 VRGEVY+S DF A+N GR +ANPRNAA+G LR+L+P +R L FF + G+ Sbjct: 187 VRGEVYLSHADFAAINARQEEAGRPLFANPRNAAAGSLRQLDPGITASRPLRFFAYAAGE 246 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S A+ Q ++ R G PVN ++ + ++++Y +++ R+ L YDIDG+VYK Sbjct: 247 MSSWPAETQSGLIGAFRRFGLPVNPRTKRCTSVAEMLAHYRAIETERAELGYDIDGVVYK 306 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VDEF+LQ++LG AR+PRW ++HKF ++A T + I+I +GRTG L P+ARL+PV +GG Sbjct: 307 VDEFALQRRLGFVARAPRWALAHKFPAQRAVTVIEAIEINVGRTGSLNPLARLKPVTVGG 366 Query: 366 ALITNATLHNEDYIKGLDASGKVM------------------RGGRDIRVGDRVLVKRAG 407 +++NATLHNEDYI+G+DA G + R G D+RVGD V+V RAG Sbjct: 367 VVVSNATLHNEDYIRGIDADGNTIRSGINIWDGFRLREDVDLRQGSDVRVGDTVVVLRAG 426 Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467 +VIPKV D+++ R DA P++FP CP C S VR NP+TGKL + RCTGGL C AQ Sbjct: 427 DVIPKVADVVLERRPADAVPYAFPETCPACGSHAVRAYNPRTGKLDSVRRCTGGLICPAQ 486 Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR----------- 516 ERL+HFVSR+AF+IEG G+ + F+ A +R PAD+F L Sbjct: 487 GQERLRHFVSRNAFDIEGFGETYIATLFE----AGLVRQPADLFRLDFEPLKAAIVARRQ 542 Query: 517 -----------QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 + K + D ++ NL ++ RR I L RFIF+LGI VG Sbjct: 543 ALSAERALAAGKTPEAKKAKPKANEEDKAIHNLLAAVEARRTIPLNRFIFALGIEQVGEA 602 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHN-NDDWLSLIRVPLVGDII 608 A++LAK++ + + A DW+ L +P VG Sbjct: 603 TAKALAKHFPDMPALMEGVRAAAACRPGPDWIELASLPRVGPTT 646 Score = 181 bits (459), Expect = 4e-43, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 80/153 (52%), Gaps = 2/153 (1%) Query: 568 RSLAKYYLSYQNFAQEIN-NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 +L Y + + D + L +G + +++EF+ N+ AVE Sbjct: 676 EALLAAYGDRDGLRNAVERALRQKPGDAYRHLADDSEIGAVTTASLIEFFSEAHNVEAVE 735 Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 ALL+EV + + +VFTG+L+++ R +A+ +LGA VS +S KTD Sbjct: 736 ALLREVRTERAGTPAAAA-VFSGQTVVFTGSLERMTRSEAKATAERLGAKVSGSVSAKTD 794 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +++ G GSKL+ A++ GV++++E ++L +++ Sbjct: 795 LVVAGPGAGSKLKDAEKHGVRVISEAEWLAMVE 827 >gi|194246669|ref|YP_002004308.1| NAD-dependent DNA ligase [Candidatus Phytoplasma mali] gi|254781388|sp|B3QZS5|DNLJ_PHYMT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|193807026|emb|CAP18462.1| NAD-dependent DNA ligase [Candidatus Phytoplasma mali] Length = 659 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 210/708 (29%), Positives = 359/708 (50%), Gaps = 51/708 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E+ +K + L +I+ + YY ++ + D +YDAL R + +P+ Sbjct: 1 MEEIKKRIIFLIDKINKTNYEYYTLNESSLNDQQYDALFRELLYLESKYPEYNYKF---S 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P KIGG ++ K H LSL ++NI++L+ F RI + + E K Sbjct: 58 PTTKIGGPISSKFHKFLHEKSMLSLNNVFNIKELKLFYDRISKKIS-----NFTLLTELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++Y+KG A RGDG+ GE ++ ++ I +P L + +EVRGEVY+ Sbjct: 113 IDGLAVSLKYKKGILDKAITRGDGYQGELITDNVKTIKELPLKLKEPL--DLEVRGEVYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 S F LN + +ANPRNAASG LR+L+ F Sbjct: 171 SYESFNYLNQIRKKENKSLFANPRNAASGTLRQLDSKVAAERNLSIFLYTIVNPPKFIIT 230 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q +L+ + L FPVNN + ++ + + I++ L Y+ DG+V K++E S Sbjct: 231 QKSILEFLTYLQFPVNNYYEYVLNWDQLIKKISYYEEIKNHLGYNTDGIVIKINELSFHS 290 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +G +++P+W I++KF + T + +I QIGRTGI+TP+A L P + G++I+ L Sbjct: 291 IIGYTSKAPKWAIAYKFKVFKTETLINNILFQIGRTGIVTPIAELLPTIVDGSVISKVNL 350 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN DYIK +DIRV D VLV ++G +IP+++++I +R + PF + Sbjct: 351 HNFDYIK-----------QKDIRVNDFVLVHKSGSIIPEIIEVIKTKR-KNQIPFEMITH 398 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 C C +++++ + L C ++++ L +FVS+ A +I LG Q L Sbjct: 399 CYSCNTKLIKKDSN---------HFCFNLDCEEKKIQELFYFVSKSAMDINVLGLQTLKI 449 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F I +D+++L + ++ ++E + GFG N+ S+ K +N L F Sbjct: 450 LFYK----GFINNISDLYSLNQYKK----EVEELHGFGKKKFNNIIISLEKSKNKCLSNF 501 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + LGI++VG +A+ LA+ + + N + SL+++ +G AQ I Sbjct: 502 LIGLGIKNVGIHLAKILAQKFENIDNLQKA----------SIESLLKIDEIGIKSAQNIK 551 Query: 614 EFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ N +N+ +E ++ +NKK++FTG L+K R++AQ V Sbjct: 552 NFFLNSKNLKLIEKFKNLGLNLFYFKSKNNIKNNIFKNKKVIFTGILEKYSRNQAQNIVI 611 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +LG V+ ++ KT+ +I+G NPGSKL KA++ +K++ E +F L++ Sbjct: 612 ELGGVIINSITNKTNYLILGKNPGSKLLKAKKFNIKVLQEHEFEELIK 659 >gi|291460667|ref|ZP_06600057.1| DNA ligase, NAD-dependent [Oribacterium sp. oral taxon 078 str. F0262] gi|291416626|gb|EFE90345.1| DNA ligase, NAD-dependent [Oribacterium sp. oral taxon 078 str. F0262] Length = 664 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 169/710 (23%), Positives = 301/710 (42%), Gaps = 65/710 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L ++ YYQ I+ + EYD L + P ++ Sbjct: 4 ERMKELIGILNRASKAYYQDGDEIMSNLEYDKLYDELQGLERE----TGIVLSASPTERV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G E+ L KV H P LSL+K + E L +++ L K+DG Sbjct: 60 GYELLSELPKVRHLSPMLSLDKTKSPEALAEWL------------GDREGLLSWKLDGLT 107 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I + YE G+ V RG+G GE V+ +R +P + + +RGE I +DF Sbjct: 108 IVLNYEGGELVRGVTRGNGEIGELVTQNVRVFDNVP--TRIPFSGSLVLRGEALIRYSDF 165 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEM 257 +ND I Y NPRN +G +R+L+P R++ L E Sbjct: 166 ERINDG-ILDAEARYKNPRNLCAGSVRQLDPGITKERHVKLLAFSLVSAKEGDGSPVDFQ 224 Query: 258 LQKMRCLGFPVNNGVRQANTF----HGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 + R F G +++ + DGLV +D+ + + Sbjct: 225 NSRRRQFEFLREQGFSVVEYRLVRGGEVLAAVKAFSERVKDNDFPSDGLVLLLDDIAYGE 284 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG A+ PR ++ K+ +++A T L +++ RTG++ PVA +PV + G ++ A+L Sbjct: 285 SLGRTAKFPRNALAFKWRDEEAETVLREVEWSPSRTGLINPVAIFDPVELEGTTVSRASL 344 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN + + L + +GDRV V +A +IP++ + Sbjct: 345 HNLSFCEELS-----------LGLGDRVSVYKANMIIPQL----------SENFTKSGTL 383 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P + + A C A+++++ FVSRDA NIEGL + L+ Sbjct: 384 SPPSRCPACGEETEVRKDKGAKFLYCKNPDCPAKRIKKFSLFVSRDALNIEGLSEMTLEK 443 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F I+ D++ L+R ++ +I ++ GFG+ S L +++ K R+ L Sbjct: 444 FIGH----GFIKSYRDLYHLERHRE----EILSMEGFGERSYERLMEAVEKSRDTLLYHL 495 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I+ LGI +G AR L +++ + + L+ V +G+++A+ + Sbjct: 496 IYGLGIDGIGLANARLLCRHFH---------QELSLIRGAEKEELLEVDGIGEVLAEKLY 546 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQ 672 ++ + + + + LL E+ + + K +V TG L R + +E + + Sbjct: 547 AYFHSEKQLSELHELLPELRIGREEEREEEGGALRGKTIVITGNLTHFENRKELEEEILR 606 Query: 673 LGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G S +S+KT ++ D+ K +KA++LG+ I+ EE+FL +L + Sbjct: 607 AGGKCSGSVSKKTSYLVNNDSSSQSGKNKKAKELGIPIVTEEEFLKILGE 656 >gi|12045108|ref|NP_072919.1| DNA ligase, NAD-dependent [Mycoplasma genitalium G37] gi|1352291|sp|P47496|DNLJ_MYCGE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|3844852|gb|AAC71474.1| DNA ligase, NAD-dependent [Mycoplasma genitalium G37] gi|166078824|gb|ABY79442.1| DNA ligase, NAD-dependent [synthetic Mycoplasma genitalium JCVI-1.0] Length = 659 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 202/710 (28%), Positives = 354/710 (49%), Gaps = 61/710 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + ++ L I +D YY S+P+I D EYD L + + PDL + + Sbjct: 1 MMDVKLKIQQLVNLIKNYDYHYYVLSEPLIDDFEYDMLYKSLQQLEKDHPDLIQI---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE K+ H+ P LSLE ++ +++ FI I + ++ F +EPK Sbjct: 58 PTQRVGGEAVKGFKKLNHNSPMLSLENAFSTKEIANFIDNI----NFQTNSKNEFVVEPK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I++ Y+ G V+A RGDG GEDV ++ I +IP L++ + IE+RGE+++ Sbjct: 114 IDGVSISLTYKNGVLVHALTRGDGSVGEDVLNNVKTIKSIP--LTIPFTKTIEIRGEIFV 171 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 K FLA+N+++ KP+AN RN A+G +R LN R L + + E Sbjct: 172 DKKTFLAINNQL----EKPFANARNLAAGTIRNLNSEITAQRKLRALFYYIPNGLEESIT 227 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q +L++++ FPV++ +R +++Y R L +++DGLV K++ Sbjct: 228 TQTMVLEQLKQWKFPVSDTIRVFQNKFQLINYLEAFDKKREQLTFNLDGLVIKLNSLLFY 287 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +QLG ++SPRW I+ KF+ K T+L + I IGRTG + A+LE VN+ G +T AT Sbjct: 288 QQLGATSKSPRWAIAFKFSPKFVQTKLTAVLITIGRTGRVNYTAKLESVNLDGTKVTAAT 347 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN DYIK +DIR+ D V++ +AGE+IPKV+ + + +R D Sbjct: 348 LHNFDYIK-----------TKDIRINDTVVIYKAGEIIPKVLKVNLEKRKNDTIIIQEQK 396 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 +CP C S++V+ ++ + C + ++ + +FVS+ A +I GL + Sbjct: 397 YCPSCNSKLVKIVDE-------VDQYCTNETCKERNIQLINYFVSKTAMDINGLNINTIT 449 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++ +R D++ L+ ++ I GD L D+I + + R Sbjct: 450 KLYEHN----LVRSIVDLYDLKDKKNQVLKLDLKI---GDKLFNKLVDNIENSKQKGMAR 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 + LGI+HVG +A++LA ++ + + +LI + VG +A+++ Sbjct: 503 LLTGLGIKHVGNVLAKNLANHFKNIKALQHA----------SLENLISLNDVGITVAESL 552 Query: 613 VEFYQNPRNICAVEAL-LKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++ +P ++ +E L L++V + N +S K+ + TG+ I R + ++ Sbjct: 553 YNWFHDPNHLQLIEQLELRQVKTDQLPLKINFETNSIYFQKRFLITGSF-NISRDQIKDL 611 Query: 670 VTQLGAV----VSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQF 714 L A ++ + D +I G+ P K+ A++L + I+NE + Sbjct: 612 ---LSAKFDCQFASEVKPTVDFVIAGNKPTLRKINHAKELNIPIINEAIW 658 >gi|261749390|ref|YP_003257075.1| DNA ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497482|gb|ACX83932.1| DNA ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 678 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 207/721 (28%), Positives = 348/721 (48%), Gaps = 58/721 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + + ++++ L +++S ++ YY + I D +D R + P+ DP+ Sbjct: 6 NQKDIKEKIYQLRKKLSEYNYQYYALNTSEISDYNFDKKLRELFLLEKEHPEF---YDPS 62 Query: 73 GPLNKIG--GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P +IG G+ H SL+ ++ ++L + RI + F Sbjct: 63 SPTLRIGVEGKKYADSSIYYHKYKMYSLQNTYSKKELMTWKKRIQKSISS------SFVC 116 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRG 189 E K DG I + Y+ G +A RGDG GE+V +R I +IP L N PE +E+RG Sbjct: 117 ELKYDGVSINLIYKNGFLTHAVTRGDGKKGEEVIENVRTIQSIPLKLIGENHPEYLEIRG 176 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ FL +N + G+ PYANPRN ASG L+ N ++ + + + + Sbjct: 177 EIFLPIKKFLEINAKRTRSGKNPYANPRNTASGTLKIQNSKEVYKRTLSCIVYSVRGKNL 236 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 QY+ LQ +R GF ++ V I + + + TLPY IDG+V KV+E Sbjct: 237 PFDTQYQALQTLRNWGFEISEKVLLCKKIKEIFHFLDYWSQWKQTLPYQIDGIVIKVNEH 296 Query: 310 SLQKQLGERARSPRWMISHKFAEKQ-ASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q LG + PRW I++KF K+ + T+LL++ Q+GRTGI+TPVA + P I G ++ Sbjct: 297 QNQSLLGYTNKYPRWAIAYKFRPKKLSETKLLNLKFQVGRTGIITPVAEVIPKKISGTIV 356 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 TL+N +I+ + I GD +L+++ G++IPKV I + +R +A P Sbjct: 357 KRVTLYNHHFIQKM-----------GIHYGDALLLEKGGDIIPKVAKINLKKRLINASPI 405 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 F + CP C+S + + C +Q + +++HFVS A NI+G+G Sbjct: 406 YFLTKCPSCRSHLRKKNE---------SFYCPNNFCPSQNMRKIQHFVSERAMNIKGIGN 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + ++ + +D++ L+R K+ I G + +L +I K ++ Sbjct: 457 EMIKKLYQK----GFLYNISDLYQLKRE------KLLQIDGVKEKLADSLIKNIEKSKDN 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +R +++LGI HVG I++ L + +L+ + Q D L + +G I Sbjct: 507 PSQRVLYALGIPHVGEYISKKLTEKFLNINSLIQA----------DEAQLTSISGIGKKI 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 +++I ++ N VE L+K KN S IE K +FTG L + R+ Sbjct: 557 SESIKTYFFTKENKKIVENLMKHGLNFSDFYKKNPVKNQYSPIEGKSFLFTGKLSSMTRN 616 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQYNT 723 KA+ V LG V ++ + + I+VG N GSKLE+ + +KI+ E+ F+ LL+Q Sbjct: 617 KAKNLVELLGGRVFHTVNNQINFIVVGKNFGSKLERCMKKNHIKILTEDIFIKLLEQEKK 676 Query: 724 T 724 Sbjct: 677 E 677 >gi|210617503|ref|ZP_03291606.1| hypothetical protein CLONEX_03828 [Clostridium nexile DSM 1787] gi|210149290|gb|EEA80299.1| hypothetical protein CLONEX_03828 [Clostridium nexile DSM 1787] Length = 653 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 186/711 (26%), Positives = 319/711 (44%), Gaps = 65/711 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +EQ ++ + L Q ++ YYQ + I+ + EYD L A+ + Sbjct: 1 MEQKKQRMQELVQLLNEAGKAYYQGTAEIMSNYEYDKLYDELLALEKE----LGITLASS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +G E+ L K H P LSL+K + L++F+ + K Sbjct: 57 PTVNVGYEVLSELPKERHEKPMLSLDKTKEVSKLKEFLGSQKAR------------ISWK 104 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG I + Y+ G A RG+G GE ++ + +P L ++ + +RGE I Sbjct: 105 LDGLTIVLTYQNGTLQKAVTRGNGEVGEVITNNAKVFKNLP--LHISYQGELILRGEAII 162 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 DF +N+E+ V Y NPRN SG +R+LN R + FF L K ++ K Sbjct: 163 GYRDFEKINEEIEDV-DAKYKNPRNLCSGSVRQLNNEITAKRNVKFFAFSLVKADDVDFK 221 Query: 253 G-QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + ++ ++ GF V G + K + + DGLV D+ + Sbjct: 222 NSRIYQMEWLKEQGFEVVEGYEVTAGTIEERVKFFSEKIADN--DFPSDGLVLVYDDIAY 279 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 + LG ++ PR + K+A++ T LL+I+ RTG++ PVA EPV + G ++ A Sbjct: 280 GQSLGTTSKFPRDSFAFKWADEIRETTLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRA 339 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 ++HN ++ L+ + +GD + V +A +IP++ + + D P Sbjct: 340 SVHNISIMEELE-----------LGIGDTIAVYKANMIIPQIAENLTRSGVKD-----IP 383 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C + A C A+ L+ FVSRDA NI+GL + L Sbjct: 384 EECPVCHGKT-----EIRKVSDAKALYCTNEECGAKHLKSFALFVSRDALNIDGLSEATL 438 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F I +DIF L++ + I+++ GFG+ S NL SI K R +L Sbjct: 439 EKFIAK----GFINHYSDIFHLEQYKD----AIKSMEGFGEKSYVNLQKSIEKARVTTLP 490 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + I+SLGI ++G A+ + K + +I + L + +G +IA+A Sbjct: 491 KLIYSLGIANIGLANAKVICK---------ELNFDIEKMLHVTEEELSEISGIGPVIAKA 541 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYV 670 V ++ +++ LL E+ K EN V TG+++ R++ + + Sbjct: 542 FVSYFAKEQHVEEFRRLLTELEIPKEEESKEA-QIFENMNFVITGSVEHFANRNEVKAVI 600 Query: 671 TQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G V+ ++ KT+ +I ++ SK +KA++LGV I++EE FL +L+ Sbjct: 601 ESKGGKVTGSVTSKTNYLINNDIESTSSKNKKARELGVPIISEETFLKMLE 651 >gi|255660255|ref|ZP_05405664.1| DNA ligase, NAD-dependent [Mycoplasma genitalium G37] Length = 658 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 202/708 (28%), Positives = 353/708 (49%), Gaps = 61/708 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++ L I +D YY S+P+I D EYD L + + PDL + + P Sbjct: 2 DVKLKIQQLVNLIKNYDYHYYVLSEPLIDDFEYDMLYKSLQQLEKDHPDLIQI---DSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GGE K+ H+ P LSLE ++ +++ FI I + ++ F +EPKID Sbjct: 59 QRVGGEAVKGFKKLNHNSPMLSLENAFSTKEIANFIDNI----NFQTNSKNEFVVEPKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I++ Y+ G V+A RGDG GEDV ++ I +IP L++ + IE+RGE+++ K Sbjct: 115 GVSISLTYKNGVLVHALTRGDGSVGEDVLNNVKTIKSIP--LTIPFTKTIEIRGEIFVDK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 FLA+N+++ KP+AN RN A+G +R LN R L + + E Q Sbjct: 173 KTFLAINNQL----EKPFANARNLAAGTIRNLNSEITAQRKLRALFYYIPNGLEESITTQ 228 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L++++ FPV++ +R +++Y R L +++DGLV K++ +Q Sbjct: 229 TMVLEQLKQWKFPVSDTIRVFQNKFQLINYLEAFDKKREQLTFNLDGLVIKLNSLLFYQQ 288 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++SPRW I+ KF+ K T+L + I IGRTG + A+LE VN+ G +T ATLH Sbjct: 289 LGATSKSPRWAIAFKFSPKFVQTKLTAVLITIGRTGRVNYTAKLESVNLDGTKVTAATLH 348 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N DYIK +DIR+ D V++ +AGE+IPKV+ + + +R D +C Sbjct: 349 NFDYIK-----------TKDIRINDTVVIYKAGEIIPKVLKVNLEKRKNDTIIIQEQKYC 397 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S++V+ ++ + C + ++ + +FVS+ A +I GL + Sbjct: 398 PSCNSKLVKIVDE-------VDQYCTNETCKERNIQLINYFVSKTAMDINGLNINTITKL 450 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 ++ +R D++ L+ ++ I GD L D+I + + R + Sbjct: 451 YEHN----LVRSIVDLYDLKDKKNQVLKLDLKI---GDKLFNKLVDNIENSKQKGMARLL 503 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 LGI+HVG +A++LA ++ + + +LI + VG +A+++ Sbjct: 504 TGLGIKHVGNVLAKNLANHFKNIKALQHA----------SLENLISLNDVGITVAESLYN 553 Query: 615 FYQNPRNICAVEAL-LKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 ++ +P ++ +E L L++V + N +S K+ + TG+ I R + ++ Sbjct: 554 WFHDPNHLQLIEQLELRQVKTDQLPLKINFETNSIYFQKRFLITGSF-NISRDQIKDL-- 610 Query: 672 QLGAV----VSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQF 714 L A ++ + D +I G+ P K+ A++L + I+NE + Sbjct: 611 -LSAKFDCQFASEVKPTVDFVIAGNKPTLRKINHAKELNIPIINEAIW 657 >gi|269114974|ref|YP_003302737.1| NAD(+)-dependent DNA ligase [Mycoplasma hominis] gi|268322599|emb|CAX37334.1| NAD(+)-dependent DNA ligase [Mycoplasma hominis ATCC 23114] Length = 668 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 222/710 (31%), Positives = 363/710 (51%), Gaps = 49/710 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED-P 71 IE+ RKE+ L+ +IS D+ YY P + D YD + A+ + E+ Sbjct: 6 DIEKIRKEIFDLQAKISAWDNAYYNLDSPEVPDEIYDVEFNKLKALEEKYASFFSDEELK 65 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P KI + KV H P LSL K +++++++KFI I + + F +E Sbjct: 66 NSPTRKINALASDLFKKVKHKRPMLSLNKAYSLDEIQKFIDNIKKI-----TSDFSFFIE 120 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG I+I YE GK V A RGDG +GEDV+A + + IP ++ E +EVRGEV Sbjct: 121 PKIDGLSISIIYEDGKLVRAITRGDGITGEDVTANVVQMSCIP--KTIEYKESLEVRGEV 178 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIF 250 Y++ +DF LN ++ + ANPRNAA+G LR+LN R L+ F++ + + Sbjct: 179 YLAISDFEKLNLKLGQENKNKLANPRNAAAGTLRQLNSQIIKERNLSAFLYYVVDPLQHN 238 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K E + ++ GFPV + V+ ANT I Y K+ + + Y+ DG+V K++E Sbjct: 239 IKTMQEEHEFLKTYGFPVTHEVQHANTLQDIEEYIRNFKNQKLLIDYETDGVVIKLNEVQ 298 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +LG A+ P + I+ K+ +T + I +GRTG++T A LEPV I G+L++ Sbjct: 299 YFDKLGSTAKFPHYAIAFKYEPNVETTTIKRIYATVGRTGLVTYNAELEPVEISGSLVSF 358 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATL+N YIK L ++ D V +K+AGE+IP V+ +I ++ D F Sbjct: 359 ATLNNFQYIKDL-----------NLNENDLVYIKKAGEIIPCVIGLISGKKEID--HFQK 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 FCP C +++ + C+ Q+ +L HF S+D +I +G++ Sbjct: 406 VEFCPYCHNKL------VDSETGLEQFCSNDQCPEIQR-RKLIHFCSKDGLDINTMGERN 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D F K+ I P DIF L+ ++Q + + G+ S+ N+ SI++ +N L Sbjct: 459 IDLFLKNS----LISNPIDIFNLKNKKQ----DLLKLNRMGEKSIENILISIDECKNKPL 510 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + I +L I +G ++A+ +A S N N D+ LI +GD I Sbjct: 511 YKMISALSIPLIGVKLAKFVASKIKSLHNLL----------NYDFSQLIDYHEIGDKIIN 560 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +I+ + N N VE ++ + + +++++ +ENK V TGTL R + + Sbjct: 561 SIISWISNDFNKKLVEDIIN-LGYDLKDENESITNLLENKSFVITGTL-GHPRSYFERLI 618 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G ++ + +S KT+ ++ G+N GSKL+KA +L + I+ EE ++ Q Sbjct: 619 EKNGGLIHSSISSKTNYLLAGENAGSKLQKANKLNITIITEEDLFKMIGQ 668 >gi|254564006|ref|YP_003071101.1| DNA ligase [Methylobacterium extorquens DM4] gi|254271284|emb|CAX27296.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens DM4] Length = 814 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 254/630 (40%), Positives = 374/630 (59%), Gaps = 31/630 (4%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 + +EALS + A+ + L + I + YY P + D+EYDAL++ +AI Sbjct: 2 LSTPLSAAVEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEA 61 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP L + + +G + + KV H++P LSL + ED+ +F+ R+ RF Sbjct: 62 RFPALTGTTEA---SAGVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNL 118 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 + ++ FT EPKIDG +++RYE G+ V AA RGDG GE+V+A + IP LS Sbjct: 119 PAEEAVAFTAEPKIDGLSLSLRYEAGRLVTAATRGDGEVGENVTANALTVDDIPETLSGE 178 Query: 181 -IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238 IPE++EVRGE+Y+S +DF A+N A G+ +ANPRNAA+G LR+L+P +R L F Sbjct: 179 GIPEVLEVRGEIYLSHDDFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRF 238 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 F + G+ SE F Q +L++ R G PVN + + ++++Y +++ R+ L YD Sbjct: 239 FAYAWGEVSEPFNDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRAIEAERAGLGYD 298 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKVD+ Q++LG +R+PRW ++HKFA ++A T LL IDI +GRTG L P+ARL Sbjct: 299 IDGVVYKVDDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARL 358 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 +PV +GG +++NATLHNE Y++G+ A G+ +R GRDIRVGD V+V RAG+VIPKV D+++ Sbjct: 359 KPVTVGGVVVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVRDVVL 418 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ++R DA P+ FP CP C SR VR+LNP+T KL A RCTGGL C AQ +ERLKHFVSR Sbjct: 419 DKRPADAVPYVFPDTCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSR 478 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR---------------------Q 517 + F++EG G+ ++ F+ A ++ PAD+F L+ + Sbjct: 479 NGFDLEGFGQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARREALSAQRRTEGE 534 Query: 518 QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577 + D ++ NL S+ RR I L RF+F+LGI +G A++LAK + Sbjct: 535 PAPKKPTKKKGEEEDKAIKNLLASLEARRKIPLNRFLFALGIPQIGESTAKALAKRFPDM 594 Query: 578 QNFAQEINNIIAH-NNDDWLSLIRVPLVGD 606 ++ DWL L +P +G Sbjct: 595 PALMAALSAATQEQAGQDWLELSALPRIGP 624 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 2/154 (1%) Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL-VGDIIAQAIVEFYQNPRNICAVE 626 ++ +Y S + + D L +G + ++++F+ P N AV Sbjct: 661 EAVLAHYGSEAEADAALERAASQRPGDAYRLFADDGEIGPVATDSLIQFFSEPHNDAAVR 720 Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 ALL+EV ++ K +VFTG+L+K+ R +A+ +LGA VS +S KTD Sbjct: 721 ALLEEVGTEP-LVATTSAAAFAGKTVVFTGSLEKMTRSEAKATAERLGAKVSGSVSAKTD 779 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +++ G GSKL+ A++ GVK+++E+ +L +L Sbjct: 780 LVVAGPGAGSKLKDAEKHGVKVVSEDDWLAMLAD 813 >gi|325261872|ref|ZP_08128610.1| DNA ligase, NAD-dependent [Clostridium sp. D5] gi|324033326|gb|EGB94603.1| DNA ligase, NAD-dependent [Clostridium sp. D5] Length = 651 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 181/710 (25%), Positives = 310/710 (43%), Gaps = 65/710 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + + L + ++ Y Q I+ + EYD L + + + Sbjct: 1 MADKKNRMQELVELLNRARRSYEQEDTEIMSNYEYDKLYDELLGLEQE----LGTTLASS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +G E+ L K H P LSL+K ++E L+ F+ + K Sbjct: 57 PTINVGYEVLSELPKERHERPMLSLDKTKDVEQLKTFL------------GDKEAVISWK 104 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG I + Y V A RG+G GE ++ + +P + + +RGE I Sbjct: 105 LDGLTIVLTYRDKTLVKAVTRGNGEVGEVITNNAKVFKNLPMH--IPFDGELILRGEAVI 162 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 DF +N E+ V Y NPRN SG +R+LN R + FF L + + K Sbjct: 163 GYKDFEKINAEIEDVD-AKYKNPRNLCSGSVRQLNNEITAKRNVRFFAFSLVSAAGVDFK 221 Query: 253 G-QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + E + GF V + + + + DGLV D+ + Sbjct: 222 NSRTEQFDWLEKQGFEVVEHHLVTADTIEEQVEWFAGEIAEN--DFPSDGLVLVYDDIAY 279 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 + LG A+ PR + K+A++ T LL+I+ RTG++ PVA EPV + G ++ A Sbjct: 280 GQSLGSTAKFPRDSYAFKWADEIRDTTLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRA 339 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 ++HN ++ L+ + VGD + V +A +IP++ + + D P Sbjct: 340 SVHNLSIMEELE-----------LGVGDEIQVYKANMIIPQIAENLTRSGVKD-----IP 383 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 S CP+C + T L C A+Q++ FVSRDA N+EGL + L Sbjct: 384 SACPVCGHDTRISMENDTKTL-----YCTNPQCQAKQIKSFALFVSRDALNMEGLSEATL 438 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F I+ DIF L R ++ +I+ + GFG+ S NL +S+ RN +L Sbjct: 439 EKFIAR----GFIKDYIDIFHLDRYEE----EIKTMDGFGEKSYVNLINSVENSRNTTLP 490 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + ++SLGI ++G A+ + + + + L + VG +IA+ Sbjct: 491 KLVYSLGIANIGLANAKMICRALGN---------DPQKLTEATVEELSEISGVGGVIAKT 541 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYV 670 V+++ +P + LL+EV + + EN V TG+++ R++ +E + Sbjct: 542 FVDYFADPGHRELFARLLEEVEIPVEEVQAEA-QIFENMNFVITGSVEHFANRNEVKELI 600 Query: 671 TQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718 G V+ ++ KT+ +I D + SK +KA+ L + I++EE+FL +L Sbjct: 601 ESRGGKVTGSVTSKTNYLINNDVQSASSKNKKARDLEIPIISEEEFLKML 650 >gi|218133029|ref|ZP_03461833.1| hypothetical protein BACPEC_00890 [Bacteroides pectinophilus ATCC 43243] gi|217991902|gb|EEC57906.1| hypothetical protein BACPEC_00890 [Bacteroides pectinophilus ATCC 43243] Length = 656 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 164/724 (22%), Positives = 301/724 (41%), Gaps = 87/724 (12%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 ++ + + L ++ YY + I+ + EYDAL + + Sbjct: 4 TMNRDIDRIKELVDILNKAGRAYYAQGQEIMSNYEYDALYDELAELEKK----TGCVLAS 59 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +G E+ L K H P LSL K ++++L ++ Sbjct: 60 SPTVNVGYEVLSELPKERHEKPMLSLGKTKSVDELVSWLGSQKGLL------------SW 107 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG I + Y G+ A RG+G GE ++ + +P +++ + +RGE Sbjct: 108 KMDGLTIVLTYNNGEMTKAVTRGNGEVGEVITGNAKVFANVP--VTIPYKGELILRGEAV 165 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFA 251 I +DF +N+ + G Y NPRN SG +R+LN R +NFF L K + Sbjct: 166 IRYSDFEKINELIPEEG-AKYKNPRNLCSGSVRQLNSRITKERNVNFFAFTLVKADGVDF 224 Query: 252 KGQYEML-QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K + + GF + E + + DGLV D+ + Sbjct: 225 KNSRREQLEWLASQGFQTVEYKEVTADNLRSTVSWFE--NAIKDNDFPSDGLVILYDDIA 282 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LG A+ PR ++ K+ ++ A T+LL+I+ RTG++ PVA EPV + G ++ Sbjct: 283 YGDSLGMTAKFPRNSLAFKWTDETAQTKLLEIEWSASRTGLINPVAVFEPVELEGTSVSR 342 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A++HN ++ L+ + VGD + V +A +IP++ + D Sbjct: 343 ASVHNISIMEELE-----------LGVGDTIEVYKANMIIPQIAKNLTRSGVKDIPQI-- 389 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 CP+C + A C A+ ++ HFV+RDA NI+GL + Sbjct: 390 ---CPVCGMKT-----EIRSLNDAKSLYCTNPDCQAKHVKSFVHFVARDAMNIDGLSEAT 441 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L+ F + + AD++ L + I ++ G G S N+ +I++ R+ +L Sbjct: 442 LEKFIQH----GMLHEFADLYHLDDYRD----TIIDMDGLGVKSYDNMMAAIDRSRHTTL 493 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + I+SLGI +VG A+ + K + L + VG++IA Sbjct: 494 PKLIYSLGIANVGLSNAKMIVKNTGTLDRILSATR----------EELCAIDGVGEVIAD 543 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEY 669 + V ++ + ++ + L+ E+ ++ + + V TG+L R++ +E Sbjct: 544 SFVSYFADDKHRQGLNRLVAELDIEAEEMASGENAVLADMVFVITGSLNHYSNRNELKEL 603 Query: 670 VTQLGAVVSAILSRKTDIII-------------VGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + +LG V+ ++ KT +I A +LGV ++ E++F+ Sbjct: 604 IEKLGGKVTGSVTGKTSYLINNDSTSSSSKNKT-----------AAKLGVPVITEDEFIK 652 Query: 717 LLQQ 720 ++++ Sbjct: 653 MIEE 656 >gi|163854038|ref|YP_001642081.1| DNA ligase, NAD-dependent [Methylobacterium extorquens PA1] gi|254781364|sp|A9VWA4|DNLJ_METEP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|163665643|gb|ABY33010.1| DNA ligase, NAD-dependent [Methylobacterium extorquens PA1] Length = 814 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 255/629 (40%), Positives = 371/629 (58%), Gaps = 31/629 (4%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 +EALS + A+ + L + I + YY P + D+EYDAL++ +AI Sbjct: 3 STPLSAAVEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEAR 62 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP L + + +G + + KV H++P LSL + ED+ +F+ R+ RF Sbjct: 63 FPALTGTTEA---SAGVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNLP 119 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 + S+ FT EPKIDG +++RYE G+ V AA RGDG GE+V+A + IP LS Sbjct: 120 AEESVAFTAEPKIDGLSLSLRYEAGRLVTAATRGDGEVGENVTANALTVDDIPETLSGEN 179 Query: 182 -PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 PE++EVRGEVY+S DF A+N A G+ +ANPRNAA+G LR+L+P +R L FF Sbjct: 180 IPEVLEVRGEVYLSHEDFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFF 239 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ SE F Q +L++ R G PVN + + ++++Y +++ R+ L YDI Sbjct: 240 AYAWGEVSEPFTDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRTIEAERAGLGYDI 299 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD+ Q++LG +R+PRW ++HKFA ++A T LL IDI +GRTG L P+ARL+ Sbjct: 300 DGVVYKVDDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARLK 359 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG +++NATLHNE Y++G+ A G+ +R GRDIRVGD V+V RAG+VIPKV D+++ Sbjct: 360 PVTVGGVVVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVRDVVIE 419 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R DA P+ FP CP C SR VR+LNP+T KL A RCTGGL C AQ +ERLKHFVSR+ Sbjct: 420 KRPADAVPYVFPDTCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRN 479 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR---------------------QQ 518 F++EG G+ ++ F+ A ++ PAD+F L+ + Sbjct: 480 GFDLEGFGQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARRETLSAQRRSEGEP 535 Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578 + D ++ NL S++ RR I L RF+F+LGI +G A++LAK + Sbjct: 536 APKKPTKKKGEEEDKAIKNLLASLDARRTIPLNRFLFALGIPQIGESTAKALAKRFPDMP 595 Query: 579 NFAQEINNII-AHNNDDWLSLIRVPLVGD 606 + + DWL L +P +G Sbjct: 596 SLMAALEAATREQAGRDWLELSALPRIGP 624 Score = 182 bits (462), Expect = 2e-43, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 83/154 (53%), Gaps = 2/154 (1%) Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL-VGDIIAQAIVEFYQNPRNICAVE 626 ++ +Y S + + + D L +G + ++++F+ P N AV Sbjct: 661 EAVLAHYGSEEKVDAALERAASQRPGDAYRLFADDGEIGPVATDSLIQFFSEPHNDAAVR 720 Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 ALL+EV + ++ K +VFTG+L+K+ R +A+ +LGA VS +S KTD Sbjct: 721 ALLEEVGTEPLATTTSAAAF-AGKTVVFTGSLEKMTRSEAKATAERLGAKVSGSVSAKTD 779 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +++ G GSKL+ A++ GVK+++E+ +L +L + Sbjct: 780 LVVAGPGAGSKLKDAEKHGVKVVSEDDWLAMLAE 813 >gi|154502207|ref|ZP_02039267.1| hypothetical protein RUMGNA_00017 [Ruminococcus gnavus ATCC 29149] gi|153797086|gb|EDN79506.1| hypothetical protein RUMGNA_00017 [Ruminococcus gnavus ATCC 29149] Length = 663 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 177/719 (24%), Positives = 309/719 (42%), Gaps = 72/719 (10%) Query: 12 LSIEQAR--------KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 ++ E+ + K + L ++++ + D YY ++ + D+EYD L + + Sbjct: 3 MNEEKMQRSDLMDKVKRIKELVEQLNEYRDAYYNEARSDVSDAEYDRLFDELSELENE-- 60 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 N P +G E+ L KV HS P LSL+K +++DL KF Sbjct: 61 --TGVVYTNSPTQSVGYEVKSELEKVKHSHPMLSLDKTKSVDDLVKFA------------ 106 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 L K+DG + YE G+ V A RGDG GE ++ + IP LS++ Sbjct: 107 GDKDCILSLKMDGLTCLLTYENGELVQAETRGDGEIGELITHNAKVFENIP--LSIDYKG 164 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHG 242 E+ GE I+ DF +N + K Y NPRN ASG +R+L+ R++ F Sbjct: 165 HFEIEGEAIITYEDFDKINKSL--PDDKKYKNPRNLASGSVRQLDSKIAAQRHIKFIAWK 222 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + + +R I +++ + IDGL Sbjct: 223 VPTDIASSSFINRLQYALDIGFDTVPFLPIRGNCNAEFINIVVEQLRKRAKEKSFPIDGL 282 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V ++ + + LG P+ I+ KFAE T L +I+ IG+TG LTPVA + V+ Sbjct: 283 VATYNDITYGESLGMTGHHPKHSIAFKFAEDSEETVLREIEWSIGKTGTLTPVAIFDSVD 342 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G ++ A+LHN +K L +I +G V V + E+IP+++ N Sbjct: 343 LAGTSVSRASLHNISIMKEL-----------NISIGSTVTVVKKNEIIPQIISCDANAMD 391 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 D P+ CP+C + L+ + C + L R+ HFVS+ + Sbjct: 392 AD-----IPTTCPVCGGETRIVKENDSEVLMCVNP-----HCKGKLLGRVSHFVSKKGMD 441 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I GL ++ + + I DI+ L + ++ + GFG SV L SI Sbjct: 442 ISGLSEETIKKLIE----LGWITEITDIYNLDQY----YDRLSTMSGFGKKSVDKLRTSI 493 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + + L++FI SL + +G ++ L K + ++ F + ++ Sbjct: 494 ENSKTVRLDKFIASLSVPGIGTSQSKELVKAFGTWDKFRDASVG--------YYDFTQLD 545 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 GD++ I ++++ N + L + ++ + K V TG + K + Sbjct: 546 GFGDVLNNNIHSWFEDMSN---IADYLASLMTFESEDNSKTNNSLNGKSFVVTGKVYKFK 602 Query: 663 -RHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R + +E + + G V+ +++ T +I ++ SK +KA++LGV+I+NEEQ + +L Sbjct: 603 NRDEVKEAIEKFGGKVTGSVTKSTFALINNDIESNSSKNKKAKELGVQIINEEQLIEML 661 >gi|80159718|ref|YP_398462.1| putative NAD-dependent DNA ligase [Clostridium phage c-st] gi|78675308|dbj|BAE47730.1| putative NAD-dependent DNA ligase [Clostridium phage c-st] Length = 649 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 187/711 (26%), Positives = 336/711 (47%), Gaps = 67/711 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E + + L +E++ + YY K ++ D E+D + N Sbjct: 1 MENQIQRVKKLIKELNDASNKYYNSDKTVMTDKEWDDKYEELKQLEQE----TGVVFSNS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+G E+ L KV H+IP SLEK +I +L KFI + K Sbjct: 57 PTQKVGYEVKSKLDKVVHNIPLKSLEKTKSINNLEKFIR------------GKTIIIMDK 104 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 DG + YE G+ + + RG+G GED++ ++ IP L ++ +++ GE I Sbjct: 105 GDGLTCELIYENGELIQGSTRGNGTIGEDITHNVKTFKNIP--LQIDFKGYLKLSGESVI 162 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAK 252 DF +N ++ + Y+N RN +G +R+L+ R + F+ L + + K Sbjct: 163 LDRDFELINSKLDEADK--YSNSRNLVAGSVRQLDSKICSNRNVRFYAFNLLECENVDFK 220 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 + + + + LGF + + + + + M+ + IDGLV+ ++ Sbjct: 221 TKEDQFKFLNQLGFEIIEYTK-CDPKQDLEGIISNMQKSAYERGFPIDGLVFTYNDIKYA 279 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 LG+ P I++KF +++ T+ + + Q+ RTG++ PVA+ EPV I G++I AT Sbjct: 280 NSLGDTLHHPLHSIAYKFYDEEYETKYITTEWQVSRTGMINPVAKFEPVEIEGSVIERAT 339 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN DY + L + GD + V +A +VIPKV+ P Sbjct: 340 LHNLDYFQDL-----------KLGQGDTIKVIKANQVIPKVMSNKTMSNAE-----VIPI 383 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C + + A L CSA+ + R+ H+ SR+A NI+GL ++ ++ Sbjct: 384 ECPVCGGKT-----EEKLLKTARVLICTNLECSAKHISRITHYCSRNAMNIDGLSEKTIE 438 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F ++ DI+ L++ ++ +I NI GFG S N+ ++I K ++ LE Sbjct: 439 KFVN----LGYLKDIDDIYNLEQYKE----EIINIDGFGLKSYNNMIEAIEKSKHCKLEN 490 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LGI++VG A+ L K + S N + + + +GD++ I Sbjct: 491 FIFALGIQNVGLGTAKLLVKKFKSIDKIM----------NCNLEEIYSIDGIGDVVGNEI 540 Query: 613 VEFYQ-NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670 +++ N +I V LLK + ++N S++++ K V TG + + R++ + V Sbjct: 541 YKYFVINQDSINLVSKLLKYIDF--EEVKENNSNKLQGKTFVITGDVHIFKNRNEIKAKV 598 Query: 671 TQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++G V+ +S+KT+ +I ++ SK +KA+ L + I+ EE+FL +++ Sbjct: 599 EEMGGKVTGSVSKKTNYLINNDSESASSKNKKAKDLNIPIITEEEFLGMIK 649 >gi|168187649|ref|ZP_02622284.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund] gi|169294495|gb|EDS76628.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund] Length = 649 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 189/711 (26%), Positives = 336/711 (47%), Gaps = 67/711 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E + + L +E++ D YY K ++D E+D + N Sbjct: 1 MEDKTQRVKELIKELNEASDKYYNSDKTTMIDKEWDDKFDELKQLEQE----TEVILSNS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+G E+ L KV H+IP SL K +I+DL+KFI + + K Sbjct: 57 PTQKVGYEVKSKLDKVVHNIPLKSLGKTKSIDDLQKFI------------GNNEILIMDK 104 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 DG + Y+ G+ + + RG+G GED++ ++ IP L ++ +++ GE I Sbjct: 105 GDGLTCELIYDNGQLLQGSTRGNGEIGEDITHNVKTFKNIP--LQIDFKGYLKLSGESVI 162 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252 DF +N ++ Y+N RN +G +R+L+ R + F+ L + E K Sbjct: 163 LDEDFELINAKLDE--EDKYSNSRNLVAGSVRQLDSKICDKRNVRFYAFSLLECGEAEFK 220 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 + E L+ + LGF ++ + + ++M+ + IDGLV+ + Sbjct: 221 TKEEQLEFLSRLGFETIEYIKY-DNSEELEQVISKMQKSAYEKGFPIDGLVFAYNNIEYA 279 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 LG+ P I++KF +++ T+ + + Q+ RTG++ PVAR EPV I G+++ AT Sbjct: 280 NSLGDTLHHPLHSIAYKFYDEEYETKYIATEWQVSRTGMINPVARFEPVEIEGSVVERAT 339 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN DY + L + GD + V +A +VIPKV+ P+ Sbjct: 340 LHNLDYFEDL-----------KLGQGDTIKVIKANQVIPKVMSNDTMSNTE-----IIPT 383 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C + K K C CSA+ + R+ H+ SR+A NI+GL ++ ++ Sbjct: 384 ECPVCGGKT----EEKLLKTARVLICINP-ECSAKHISRIVHYCSRNAMNIDGLSEKTIE 438 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F ++ DI+ L++ ++ +I NI GFG S N+ ++I K ++ LE Sbjct: 439 KFVN----LGYLKDIDDIYKLEQYKE----EIINIDGFGTKSYNNMIEAIEKSKHCKLEN 490 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LG+ VG A+ L K + S + N + + + +GD++ I Sbjct: 491 FIFALGVPSVGLGTAKLLVKKFKSIEKVM----------NCNLEEIYSIDGIGDVVGNEI 540 Query: 613 VEFYQ-NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670 ++ N +I V LLK +++ S+++E K V TG + + R++ + + Sbjct: 541 YNYFIINKDSINLVNKLLK--FIDFEEVKESSSNKLEGKTFVITGDVHVFKNRNEVKAKI 598 Query: 671 TQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++G V+ +S+KTD +I ++ SK +KA+ L + I+ EE+F+ +++ Sbjct: 599 EEMGGKVTGSVSKKTDYLINNDVESTSSKNQKAKDLNIPIITEEEFVEMIK 649 >gi|119476275|ref|ZP_01616626.1| DNA ligase [marine gamma proteobacterium HTCC2143] gi|119450139|gb|EAW31374.1| DNA ligase [marine gamma proteobacterium HTCC2143] Length = 781 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 210/632 (33%), Positives = 332/632 (52%), Gaps = 46/632 (7%) Query: 12 LSI-EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ++ ++++ L ++ H+ Y+ +P + D+EYD L R+ + FP + Sbjct: 1 MTEISDPKQQIEELRSTVNLHNYRYHALDEPTVPDAEYDRLIRQLQVLEAKFPQFITN-- 58 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G + +V H P LSL+ ++N ++L F R+ K + Sbjct: 59 -DSPTQRVGAKPLAGFNQVQHEAPMLSLDNVFNAQELSDFDHRVKERLGK--GVKFSYCC 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189 EPK+DG +++ Y GK V A RGDG++GED++ +R IPTIP L P ++EVRG Sbjct: 116 EPKLDGAAVSLLYRDGKLVRGATRGDGNTGEDITHNVRTIPTIPLALIGEGYPRLLEVRG 175 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTS 247 E+Y+ + F LN A K + NPRNAA+G LR L+ R L + +G Sbjct: 176 EIYMPRAGFDMLNKRARANDEKLFVNPRNAAAGSLRMLDAKITAERPLEMCCYSVGVMEG 235 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 A +L +++ GF +NN +R + G + Y++ + R LPYDIDG+VYKVD Sbjct: 236 GDLAPNHSGILAQLQGWGFRINNEMRVVDDVEGCLKYHDYLLRRRPDLPYDIDGIVYKVD 295 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 S Q+ LG A+ PRW I+HKF ++ T LLD+D Q+GRTG +TPVARL PV +GG Sbjct: 296 TISQQQSLGFTAKGPRWAIAHKFPAEEEITTLLDVDFQVGRTGAVTPVARLAPVFVGGVT 355 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN D I+ L I + D V+V+RAG+VIP++ +++ R DA Sbjct: 356 VSNATLHNRDEIERL-----------GIMINDAVVVRRAGDVIPQIAKVVLERRGSDAIK 404 Query: 428 FSFPSFCPICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 +FP +CP+C S V + + + A+RC G L C AQ + + HF SR A Sbjct: 405 IAFPDYCPVCGSHVERVKIVTHSKSGRREGVGVAYRCVGRLVCRAQLSQAIIHFASRKAL 464 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +I+GLG++ ++ E ++ PAD++ LQ + + + GF ++S NL + Sbjct: 465 DIDGLGEKIVEQLVIEER----LKSPADLYRLQ------VSDLAALEGFAELSAKNLVSA 514 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I RR + L + +F+LGI VG E A+ LA+ + S + LI++ Sbjct: 515 IAARRAVPLHKLVFALGIPDVGEETAKVLARVFGSLERIRVA----------KPELLIQL 564 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 P +G +A I EF+ + N ++ L+ Sbjct: 565 PDIGREVAGEITEFFADNHNALVLDDLVSVGV 596 Score = 168 bits (424), Expect = 4e-39, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 14/175 (8%) Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + I S I ++G A +A ++ + L V + A Sbjct: 616 QLIASFNISNIGPTSAARVAAHFGTMAALMAA----------SIDDLAMVEKLSVKAASG 665 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIG----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + +++Q +N E L +++ + + + V TGTL+ + R A+ Sbjct: 666 LFDYFQCTQNRQYAEQLEQQLLDFKMHWNCEKGQTENLPLSGMTYVVTGTLESMGRDLAK 725 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + + LGA V+ +S+ T ++ G GSKL KA+QLGV +M+E FL LL +++ Sbjct: 726 QKLESLGAKVAGSVSKNTHCVVAGSAAGSKLVKAEQLGVTVMDEAMFLALLAEFD 780 >gi|170746461|ref|YP_001752721.1| DNA ligase, NAD-dependent [Methylobacterium radiotolerans JCM 2831] gi|254781368|sp|B1M575|DNLJ_METRJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|170652983|gb|ACB22038.1| DNA ligase, NAD-dependent [Methylobacterium radiotolerans JCM 2831] Length = 810 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 257/635 (40%), Positives = 369/635 (58%), Gaps = 34/635 (5%) Query: 1 MKKRQLIPIE-ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59 M + P++ L+ E+AR E + L I D YYQ P I D+EYD L+RR + I Sbjct: 1 MAATKSEPLDLDLTAEEARAEYARLSDAILEADRLYYQEDAPEISDAEYDRLRRRLEDIE 60 Query: 60 HAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119 FPDLA + +G + + KV H++P LSL ++ ++ +F+ R+ RF Sbjct: 61 ARFPDLAGTGAA---STSVGAKPSEKFAKVRHAVPMLSLGNAFDDAEVAEFVARVRRFLG 117 Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179 DD + FT EPKIDG +++RY G+ AA RGDG GE+V+A R + IP VL+ Sbjct: 118 WSDDTPLAFTAEPKIDGLSLSLRYVNGRLDTAATRGDGEVGENVTANARTVQDIPAVLAG 177 Query: 180 N-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237 PEI EVRGEVY+S DF A+N A G+ +ANPRNAA+G LR+L+P +R L Sbjct: 178 AGWPEICEVRGEVYLSHADFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLR 237 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 FF + G+ S A+ Q +L++ G PVN ++++Y +++ R+ L Y Sbjct: 238 FFAYAWGELSAPIAETQTGVLEQFATWGLPVNPRTETFTDTAAMLAHYRRIEADRAGLGY 297 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+VYKVD+ +LQK+LG +RSPRW ++HKFA ++A+T + DI I +GRTG L P+A+ Sbjct: 298 DIDGVVYKVDDLALQKRLGFVSRSPRWALAHKFAAQEATTVVEDIVINVGRTGSLNPLAK 357 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 L PV +GG +++NATLHNE Y+KG+ A G+ +R GRDIRVGD V V RAG+VIPKV+D+ Sbjct: 358 LRPVTVGGVVVSNATLHNEGYVKGVGADGEPIRDGRDIRVGDTVTVVRAGDVIPKVMDVD 417 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 + +R D++P++FP CP C SR VR +NP+TG+ A RCTGGL C AQ +ER+KHFVS Sbjct: 418 LTKRPADSRPYAFPESCPACGSRAVRAINPRTGRPDAVRRCTGGLICPAQGVERMKHFVS 477 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL--------- 528 R+ F+IEG G+ ++ F+ A +R PAD+F L + + Sbjct: 478 RNGFDIEGFGETYIEVLFE----AGLVRQPADLFRLDFEELKAAIVARREALSAERRAES 533 Query: 529 --------------GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574 D ++ NL ++ RR + + R +F+LGI +G A++LAK + Sbjct: 534 GTAEPPKKAAKKKGDEDDKAIKNLLAAVEARRAVPMNRLLFALGIPQIGEATAKALAKRF 593 Query: 575 LSYQNFAQEINNIIAHN-NDDWLSLIRVPLVGDII 608 I A DW+ L VP VG Sbjct: 594 ADMPTLIAAIREAAAAQPGPDWVELTAVPRVGGTT 628 Score = 177 bits (448), Expect = 6e-42, Method: Composition-based stats. Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 2/154 (1%) Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL-VGDIIAQAIVEFYQNPRNICAVE 626 +L +Y I A D + +G + A++ F+ P N AV Sbjct: 657 ENLLAHYGDVDAVRAAIAQAAAQRPGDAYRVFADDGEIGPVATDALLLFFSEPHNADAVT 716 Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 ALL V+ S K +VFTG L+K+ R++A+ +LGA VS +S KTD Sbjct: 717 ALLDAVAVQPMERAAAA-STFAGKTVVFTGALEKMTRNEAKAVAERLGAKVSGSVSAKTD 775 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +++ G GSKL+ AQ+ GV++++E+ +L ++ Q Sbjct: 776 LVVAGPGAGSKLKDAQKHGVRVVSEDDWLAMVAQ 809 >gi|302344112|ref|YP_003808641.1| DNA ligase, NAD-dependent [Desulfarculus baarsii DSM 2075] gi|301640725|gb|ADK86047.1| DNA ligase, NAD-dependent [Desulfarculus baarsii DSM 2075] Length = 691 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 228/715 (31%), Positives = 358/715 (50%), Gaps = 38/715 (5%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +E S+ A + ++ L +E+ YY + + D+ YD + + FP L + Sbjct: 1 MEKPSLSAAARRVAQLSEELRRWSRVYYNEGRQEVADALYDQRFAELEELERLFPMLRLA 60 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P ++G S V+H P LSLE + D + + R Sbjct: 61 ---DSPTRRVGAPPQSSFAAVSHFRPMLSLE---SRGDFGL-VGDLLRRLADAGQPEAAI 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +PKIDG I + YE A+ RGDG G+DV+ R + IP L P ++ VR Sbjct: 114 LAQPKIDGLSIELVYENNLLRTASTRGDGVVGDDVTTNARVVGGIPHALEGLAPALVVVR 173 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247 GEVY+ + FL LN +++A G+ +ANPRNAA+G LR+ + R L FFV L Sbjct: 174 GEVYMDRAGFLDLNRQLVAQGQDGFANPRNAAAGSLRQQDPFVTAGRPLRFFVFELVNAD 233 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYN-EMKSIRSTLPYDIDGLVYKV 306 ++ + L+ + GFP+ + + V + + + R+ LP+DIDG+ KV Sbjct: 234 DLGLASDSDALRLLGQWGFPLTDDHLRLGRGAEFVRQAHADYLARRAELPFDIDGVALKV 293 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ +L+ LG+R+R+PRW ++ KF +Q T +LD+ +Q+GRTG LTPVA LEPV+IGG Sbjct: 294 DDLALRGVLGQRSRTPRWAVAWKFPPRQEVTPVLDVVVQVGRTGKLTPVALLEPVDIGGV 353 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-A 425 + ATLHN + + L D+RVGD ++RAG+VIP+V + Sbjct: 354 TVARATLHNFEEVARL-----------DLRVGDLARMERAGDVIPRVAGVARQAPPERRG 402 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ CP+C + +VRD HRC L C AQQ L+HF SR A ++EG Sbjct: 403 PAIVAPTHCPVCGATIVRDEG------GVNHRCPNSLGCPAQQKAALRHFASRAAMDVEG 456 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG + ++ ++ + ++ L R+ ++ + G+G++S NL +I Sbjct: 457 LGGKNVEALWER----GFLSDLPSLYALAARRD----ELAGLRGWGELSADNLLRAIAAT 508 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--AHNNDDWLSLIRVPL 603 + +L+RFIF+LGI VG E A+ LA+ S + + A + L L + Sbjct: 509 KGAALDRFIFALGIPGVGQETAKLLAQRLGSLEALVAAADGWRKPAKDRPAGLYLDDIAG 568 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQ 662 VG A+ I F+Q P+ L + V P+ + + K +VFTG L+ + Sbjct: 569 VGPKTAEDIQRFFQTPQTRQTALKLAELVGPTWAESPTPRAGAPLAGKTIVFTGRLEGLS 628 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 R +A+ GA V+ +SR TD +++G+NPG KL +A++LGV M +FL L Sbjct: 629 RPQAKALAEAAGAKVAGQVSRSTDWLVLGENPGGKLGEARKLGVPTMTLAEFLTL 683 >gi|167745884|ref|ZP_02418011.1| hypothetical protein ANACAC_00578 [Anaerostipes caccae DSM 14662] gi|167654748|gb|EDR98877.1| hypothetical protein ANACAC_00578 [Anaerostipes caccae DSM 14662] Length = 651 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 181/711 (25%), Positives = 318/711 (44%), Gaps = 65/711 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + L +S YYQ ++ ++ + EYD L + + + Sbjct: 1 MKDKFDRMKELIHILSEASKAYYQENRELMSNFEYDKLYDELLELEKE----TDTVLADS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +G E+ SL K HS P LSL+K + L +++ K Sbjct: 57 PSIHVGYELLTSLEKEPHSSPMLSLDKTKEVGQLEEWLGDQKGLL------------SWK 104 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG I + Y++G + A RG+G GE V+ + +P + + +RGE I Sbjct: 105 LDGLTIVLTYQEGVLLKAVTRGNGEVGEVVTNNAKVFVNLP--KKIAYKGTLVIRGEAVI 162 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 +DF +N+EM + Y NPRN SG +R+LN R + F+ + ++ Sbjct: 163 HYSDFRRMNEEMEDL-DSRYKNPRNLCSGSVRQLNNEVTAKRNVRFYGFSVADVPDVDFH 221 Query: 253 GQ-YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 E R LGF + + V DGLV D+ + Sbjct: 222 NSVEEKFIWARSLGFDIVDYVAVTKDTVA--EEVERFSQAIENNDQPSDGLVLIYDDIAY 279 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 + LG A+ PR I+ K+A++ A T L +I+ RTG++ PVA +PV + G+ ++ A Sbjct: 280 GRSLGTTAKFPRDSIAFKWADEIAETTLKEIEWSPSRTGLINPVAIFDPVELEGSTVSRA 339 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHN ++ L+ + VGD++ V +A +IP++ R DA P Sbjct: 340 SLHNISVMEELE-----------LGVGDQISVYKANMIIPQL--AENQTRSGDAP---IP 383 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + + CSA++++ HFVSRDA N++GL + L Sbjct: 384 DTCPACGGKT-----EIEEENGIRTLVCPNQFCSAKKIKLFSHFVSRDAMNVDGLSEASL 438 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + D+FTL+ ++ +I + GFG+ S NL D+I + + ++L Sbjct: 439 HKMMDK----GLLNELYDLFTLKEHKE----EIIEMEGFGEKSFHNLADAIERAKKVTLP 490 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 +F++SLGI +VG A+ + +Y+ +++ A N + + +G II +A Sbjct: 491 KFLYSLGIANVGLSNAKLICRYFE---------DDLDAIRNAEAEDFTAIDGIGPIIGEA 541 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYV 670 + +++ N V+ LL+ V R + ++ K V TG+L+ R + QE + Sbjct: 542 VSGYFRLENNKQTVDRLLQYVEIE-KRQTEETEKLLDGKTFVITGSLEHYENRKQLQEQI 600 Query: 671 TQLGAVVSAILSRKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LG + +++KTD +I + SK +KA +L + I+ EE+F+ +++ Sbjct: 601 EILGGKATGSVTKKTDYLINNNKNSASSKNKKAMELSIPIITEEEFMDMIK 651 >gi|331270899|ref|YP_004385610.1| putative NAD-dependent DNA ligase [Clostridium botulinum BKT015925] gi|329127291|gb|AEB77235.1| putative NAD-dependent DNA ligase [Clostridium botulinum BKT015925] Length = 649 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 185/711 (26%), Positives = 331/711 (46%), Gaps = 67/711 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E + + L +E++ D YY + ++ D E+D + + N Sbjct: 1 MEDKTQRVKELIKELNQASDKYYNSDETVMTDKEWDDKFDKLKQLEQD----TGIILSNS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+G E+ L KV H+IP SL K +I DL KFI S + K Sbjct: 57 PTQKVGYEVKSKLDKVVHNIPLKSLGKTKSIGDLNKFI------------GSNEVIIMDK 104 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 DG + YE G+ + + RG+G GED++ ++ IP L ++ +++ GE I Sbjct: 105 GDGLTCELIYENGQLLQGSTRGNGEIGEDITHNVKTFKNIP--LQIDFKGYLKLSGESVI 162 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252 DF +N ++ Y+N RN +G +R+L+ R + F+ L + + Sbjct: 163 LDEDFELINSKL--DDEDKYSNSRNLVAGSVRQLDSNICDKRNVKFYAFSLLECEGVDFI 220 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 + E L+ + LGF ++ N + ++M+ + IDGLV+ + Sbjct: 221 TKEEQLEFLSRLGFETIEYIKY-NNSEDLEQVISKMQKSAYEKGFPIDGLVFAYNNIEYA 279 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 LG+ P I++KF +++ T+ + + Q+ RTG++ PVAR +PV I G+++ AT Sbjct: 280 NLLGDTLHHPLHSIAYKFYDEEYETQYITTEWQVSRTGMINPVARFKPVEIEGSVVERAT 339 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN DY + L + GD + V +A +VIPKV+ P+ Sbjct: 340 LHNLDYFEDL-----------KLGQGDTIKVIKANQVIPKVMSNDTMSNTE-----IIPT 383 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C + + A CSA+ + R+ H+ SR+A NI+GL ++ ++ Sbjct: 384 ECPVCGGKT-----EEKLLKTARVLICNNPECSAKHISRITHYCSRNAMNIDGLSEKTIE 438 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F ++ DI+ L++ ++ +I NI G G S N+ ++I K + LE Sbjct: 439 KFVN----LGYLKDIDDIYKLEQYKE----EIINIDGLGTKSYNNMIEAIEKSKYCKLEN 490 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LG+ +VG A+ L K + S N + + + +GD++ I Sbjct: 491 FIFALGVPNVGLGTAKLLVKQFKSIDKIM----------NCNLTEIYGIEGIGDVVGSEI 540 Query: 613 VEFYQ-NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670 ++ N +I V LLK +++ S+++E K V TG + + R++ + + Sbjct: 541 YNYFIINTDSINLVNKLLK--FIDFEEVKESSSNKLEGKTFVITGDVHVFKNRNEVKAKI 598 Query: 671 TQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++G V+ +S+KTD +I ++ SK +KA+ L + I+ EE+F+ +++ Sbjct: 599 EEMGGKVTGSVSKKTDYLINNDVESTSSKNQKAKDLNIPIITEEEFVEMIK 649 >gi|326792059|ref|YP_004309880.1| DNA ligase, NAD-dependent [Clostridium lentocellum DSM 5427] gi|326542823|gb|ADZ84682.1| DNA ligase, NAD-dependent [Clostridium lentocellum DSM 5427] Length = 649 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 177/707 (25%), Positives = 310/707 (43%), Gaps = 62/707 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A + + L + Y Q + ++ + EYD + Sbjct: 2 KAVERMKELVDVLGKAAYAYEQEDREVMSNYEYDKFYDELKRLEEE----TGIILAGSVT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G E+ SL K+TH LSL+K + L+ F+ + L K+D Sbjct: 58 QKVGYEIASSLPKITHPKRMLSLDKTKEVSKLKAFL------------GNQEGLLSWKLD 105 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I YE+G+ V A RG+G GE+++ + +P L+++ E + +RGE I+ Sbjct: 106 GLTIVCIYEEGQLVSAVTRGNGSVGEEITNNAKTFKELP--LAIDYKERVVLRGEAIITY 163 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 +DF +N+ + + Y NPRN SG +R+LNP + Sbjct: 164 SDFERINEGLGEK-EEKYKNPRNLCSGSVRQLNPQITAGRNVRLYAFTLVEGGPDVATKA 222 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L+ ++ GF V + P+ DGLV ++ L Sbjct: 223 EQLEWLKARGFKVVEYKHVTANNIEETVA--YFAEAIKSQPFASDGLVLTYNDREYSASL 280 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 GE A+ P+ I+ K+ ++ T+LL+++ RTG++ PVA EPV I G + A++HN Sbjct: 281 GETAKFPKDAIAFKWQDEIVETKLLEMEWNTSRTGLINPVAIFEPVEIEGTTVERASVHN 340 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 ++ L + +GD + V +A +IP++ + + + P CP Sbjct: 341 LSILEEL-----------KLGIGDTIKVYKANMIIPQIAENLTQ-----SANVEIPEVCP 384 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C + + + A C AQ+L L HF +RDA NIEGL + ++ Sbjct: 385 VCGAHTMIM-----KEKEAKTLICPNSNCKAQRLRALAHFTTRDAMNIEGLSEATIEKLL 439 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + ++ ++ L R + ++ + G G S L SINK R+++L F++ Sbjct: 440 EK----GYLKDFTSLYHLDRYEA----EVIEMEGLGKKSFDKLIKSINKSRDVALANFVY 491 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGI VG A+ + K++ + + + LI + VG +IA+ E+ Sbjct: 492 ALGIAQVGLGTAKLICKHFNN---------ELDEMMKARYEQLITIDGVGPVIAKEFEEY 542 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLG 674 + N +E L+KE+ + + S I NK V TG + + R + Q + LG Sbjct: 543 FNLEENKAMLETLVKEIHFKLENVTISQESPILNKTFVITGDVNYFKNRKELQAKIETLG 602 Query: 675 AVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V+ +S+ TD +I ++ SK +KA++LG+ I+ E QFL +++ Sbjct: 603 GKVTGSVSKNTDYLINNDSESNSSKNKKAKELGIPILTEAQFLEIIE 649 >gi|308189932|ref|YP_003922863.1| DNA ligase (NAD(+)) [Mycoplasma fermentans JER] gi|238809881|dbj|BAH69671.1| hypothetical protein [Mycoplasma fermentans PG18] gi|307624674|gb|ADN68979.1| DNA ligase (NAD(+)) [Mycoplasma fermentans JER] Length = 664 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 205/710 (28%), Positives = 349/710 (49%), Gaps = 50/710 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A++ +K++ L +++ + YYQ + P + D EYD + + + +P Sbjct: 4 AMNALDIKKKIIELSNKLNQWNKEYYQDNNPSVSDFEYDKALQELEQLEKKYPQFIYV-- 61 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 N P K+G + KV H P LSL K ++ ++ K++ I + +D I F++ Sbjct: 62 -NSPTQKLGSFADNKFKKVVHQKPMLSLSKAYDYSEIEKYVNNIEKLVPIED---INFSI 117 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 EPKIDG I++ Y G A RGDGH GEDV+ I I +IP +N +EVRGE Sbjct: 118 EPKIDGLSISLHYNHGFLNQALTRGDGHEGEDVTENIYQIASIP--KIINYDAELEVRGE 175 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEI 249 V++ K +F LN+ +I G KP++NPRNAASG LR+L+PT R L F++ L + + Sbjct: 176 VFLPKAEFQRLNENLIKAGEKPFSNPRNAASGTLRQLDPTIVKNRQLASFLYELVEPQKH 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q + L+ + L P N + + + YD DGLV K++ Sbjct: 236 NITTQEQALEFFQKLNIPTNPYHKVVEVEELEEAISFFAEMKNKL-NYDADGLVIKLNNL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + ++G+ A+ P+ I+ K+ + A + + DI +GRTG +T VA LEPV + ++ Sbjct: 295 TYWNKMGKTAKFPKHSIAFKYEVETAISTIKDIKTTVGRTGKITYVASLEPVELNQTIVR 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN ++I+ L +I + D+V + +AGE+IPKV+ ++ + F Sbjct: 355 AATLHNYNFIEDL-----------NININDQVQIVKAGEIIPKVLALVKKQSKG---VFG 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 CP C S +V + + C + + HF SR + NI GLG Sbjct: 401 KTLECPSCGSVLVEIEDN-------VDQFCVNKNCPEMTINAIYHFASRKSLNIVGLGLI 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F+K ++ DIF L + + ++ + + ++ V NL +I K ++ + Sbjct: 454 TVKDFYKHN----LVKSIEDIFNLHKHKD----ELLKLERYAELKVNNLLTNIGKAKDST 505 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 + +F+LGI+HVG A+ ++K Y ++ E + + + + +G I Sbjct: 506 FSKVLFALGIKHVGERAAKLISKQYHNFDELICEKDELAK--------ISAINNIGPKIL 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++ E+ +N N+ + + + + S ++ N V TG L R + Sbjct: 558 DSLKEYLKNEENVKLLRKFDEI--FNYQKIATVASEKLINLSFVITGKLSN-SRDHYVDL 614 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V G VS+ +S KT ++VG++ GSKL+KA++L + I+NEEQF +L+ Sbjct: 615 VEANGGKVSSSVSSKTSFLLVGEDAGSKLDKAKKLNIAIINEEQFNEMLK 664 >gi|325972726|ref|YP_004248917.1| DNA ligase, NAD-dependent [Spirochaeta sp. Buddy] gi|324027964|gb|ADY14723.1| DNA ligase, NAD-dependent [Spirochaeta sp. Buddy] Length = 696 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 197/735 (26%), Positives = 341/735 (46%), Gaps = 75/735 (10%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + E+ SL ++++ + YY ++P++ D EYD L R A+ +P L + + Sbjct: 1 MNELEHEIHSLVEQLASYQKAYYVDNRPLVSDLEYDRLFDRLVALETQYPHLKLA---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G +++ +L +V H+IP LSL+K ++ ++ +I + K + +E K Sbjct: 58 PTQRVGSDLDSALVEVAHTIPVLSLDKAYSDGEMLSWIEKTE----LKIGEEVGIVIEEK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I + YE G A RG+G G DV+A ++ I +IP L L + E + VRGE+Y+ Sbjct: 114 IDGISIVLYYEDGLLKRAVTRGNGMVGNDVTANVKTIASIP--LRLPVKESLAVRGEIYL 171 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 K F ++ A P+ANPRN A+G +RR+ +++ + G E+ Sbjct: 172 PKETFA----KLNAQMEVPFANPRNLAAGTIRRIKSSEVAKVPLQIFVYEGFWKEVVHTD 227 Query: 254 QYEMLQKMRCLGFPVNNGVRQANT--------------------FHGIVSYYNEMKSIRS 293 ++L + GF +N + F + SY + R+ Sbjct: 228 HLQILSTLASYGFRLNPNLGYFAKDASQARQALMDAQLSGFGGSFSDLASYIQDHTQKRA 287 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 +L Y+IDGLV KV+ S ++ LG PRW +++KF QA T + ID+Q+GRTG +T Sbjct: 288 SLGYEIDGLVAKVNSLSGREMLGYTGHHPRWAMAYKFESPQAQTVVQAIDVQVGRTGRVT 347 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 PVAR+ PV + G+ I+N TLHN+DYI L+ + +GD V + R G+VIP V Sbjct: 348 PVARVVPVQVAGSTISNITLHNQDYINMLE-----------LGLGDTVEISRRGDVIPAV 396 Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473 +I + P+ CPIC S + + AH ++C AQ R++ Sbjct: 397 ERVIEKN-ESSQGIYHMPTRCPICDSTL---------ESRGAHTFCPNISCPAQIRGRIE 446 Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533 F+ ++ +I+ G + ++ DI+ + R+ S GFG+ Sbjct: 447 FFIGKEGMDIDNFGPETAAALID----LGYLKDIDDIYRIDYRKALSDQA-----GFGEK 497 Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR-SLAKYYLSYQNFAQEINNIIAHNN 592 + + + K + + + +LG+ +G + A LA S + N Sbjct: 498 KIRLIEGGVQKSKEQPFRKVLVALGLPELGKKGAELLLANGITSMEILLD------IANR 551 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENK 650 D L + +G+ IA+ +E P + L + + + + Sbjct: 552 GDVQRLTSIKQIGEKIARLYIEALCEPAMQQRIARLASLGLAMAEGEQQLQKLDDSFSGQ 611 Query: 651 KLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 TG+ + R A + V + G + ++ KT ++ G+ GSKLE A+ L V+++ Sbjct: 612 VWCVTGSFEHFNPRSLAMDEVVKRGGRTVSSVTSKTTHLLAGEGGGSKLETARSLKVQVV 671 Query: 710 NEEQFLFLL--QQYN 722 +E+ FL LL +Q+N Sbjct: 672 DEQTFLTLLKSKQHN 686 >gi|330837729|ref|YP_004412370.1| DNA ligase [Spirochaeta coccoides DSM 17374] gi|329749632|gb|AEC02988.1| DNA ligase [Spirochaeta coccoides DSM 17374] Length = 716 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 207/732 (28%), Positives = 333/732 (45%), Gaps = 71/732 (9%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + E A + ++ L + + YY +P + D EYD L A+ A PD+ + + Sbjct: 3 TQETAVRRMAELSRILLDAQHEYYVLGRPSMSDKEYDTLMDELAALEAAHPDVKEA---D 59 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++G ++ +V HSIP LSL+K ++ E + ++ + K D + F +E Sbjct: 60 SPTQRVGSDLTSDFPEVRHSIPVLSLDKAYSAEAIVSWMNK----AGLKADTGLSFIVEE 115 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG + + YEKG V A RG+G G DV+A IR I +P LS + I VRGEVY Sbjct: 116 KIDGVSMVLYYEKGILVRAVTRGNGTVGNDVTANIRTIAAVPLRLSEPL--DIAVRGEVY 173 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NFFVHGLGKTSEIF 250 + K F + PYANPRN A+G +RR+ ++ R F Sbjct: 174 LPKESF----SVLNKTMEIPYANPRNLAAGTIRRIKSSETARVPLTIFVYEAYFAGDATL 229 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANT--------------------FHGIVSYYNEMKS 290 E+L + LGF VN + + F + Y + + Sbjct: 230 YPNHVELLAALVRLGFRVNPHLGVFASGRQEAEALLSASGVQGFSGAFDDLAGYISGVTR 289 Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350 R LPY+IDGLV KV++ +L+ G PRW I++KF A T + DID+Q+GRTG Sbjct: 290 ERGNLPYEIDGLVVKVNDLALRDVFGYTGHHPRWAIAYKFESPAAQTVVQDIDVQVGRTG 349 Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410 +TP+AR+ V IGG++++N TLHN+DYI L+ + +GD V V + G+VI Sbjct: 350 RITPMARVRSVPIGGSVVSNVTLHNQDYIDLLE-----------LAIGDTVEVSKRGDVI 398 Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 P V ++ + + P+ CP C S +V A C C AQ Sbjct: 399 PAVERVVEKNEEGNT-TWRIPAICPSCGSTLVIR--------GAHTFCPNASGCPAQVGG 449 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530 R++ FV +D +I G + + + DI+TL R+ GF Sbjct: 450 RIQFFVGKDGMDIANFGPETVTVLRNINA----LSDIPDIYTLDYRRVLDGQ-----PGF 500 Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 G ++ + + RN + +LG+ G + L S ++ Q ++ + H Sbjct: 501 GKKKISLIVTGVEDSRNRPFRVVLSALGLPDFGRKAVDQLLDA-GSIRSMEQLLHIVDTH 559 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIE 648 D +L +P +G+ +A ++E P + AL + + +V Sbjct: 560 ---DMDTLTSIPQIGEKMAMTLIESLSAPEMRARIHALGEAGLSFEEEASQVSDVPQIFA 616 Query: 649 NKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 + TG+ + R KA V + G V++ ++ KT ++ G GSKL +AQ+ G + Sbjct: 617 GQTWCVTGSFEHFSPREKAMVEVKKRGGRVTSSVTGKTTHLLAGGGAGSKLSQAQKAGAR 676 Query: 708 IMNEEQFLFLLQ 719 I++E++FL +L Sbjct: 677 IVSEDEFLGMLD 688 >gi|319777211|ref|YP_004136862.1| DNA ligase [Mycoplasma fermentans M64] gi|318038286|gb|ADV34485.1| DNA ligase [Mycoplasma fermentans M64] Length = 660 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 204/709 (28%), Positives = 348/709 (49%), Gaps = 50/709 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ +K++ L +++ + YYQ + P + D EYD + + + +P Sbjct: 1 MNALDIKKKIIELSNKLNQWNKEYYQDNNPSVSDFEYDKALQELEQLEKKYPQFIYV--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P K+G + KV H P LSL K ++ ++ K++ I + +D I F++E Sbjct: 58 NSPTQKLGSFADNKFKKVVHQKPMLSLSKAYDYSEIEKYVNNIEKLVPIED---INFSIE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG I++ Y G A RGDGH GEDV+ I I +IP +N +EVRGEV Sbjct: 115 PKIDGLSISLHYNHGFLNQALTRGDGHEGEDVTENIYQIASIP--KIINYDAELEVRGEV 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 ++ K +F LN+ +I G KP++NPRNAASG LR+L+PT R L F++ L + + Sbjct: 173 FLPKAEFQRLNENLIKAGEKPFSNPRNAASGTLRQLDPTIVKNRQLASFLYELVEPQKHN 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q + L+ + L P N + + + YD DGLV K++ + Sbjct: 233 ITTQEQALEFFQKLNIPTNPYHKVVEVEELEEAISFFAEMKNKL-NYDADGLVIKLNNLT 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++G+ A+ P+ I+ K+ + A + + DI +GRTG +T VA LEPV + ++ Sbjct: 292 YWNKMGKTAKFPKHSIAFKYEVETAISTIKDIKTTVGRTGKITYVASLEPVELNQTIVRA 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN ++I+ L +I + D+V + +AGE+IPKV+ ++ + F Sbjct: 352 ATLHNYNFIEDL-----------NININDQVQIVKAGEIIPKVLALVKKQSKG---VFGK 397 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 CP C S +V + + C + + HF SR + NI GLG Sbjct: 398 TLECPSCGSVLVEIEDN-------VDQFCVNKNCPEMTINAIYHFASRKSLNIVGLGLIT 450 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+K ++ DIF L + + ++ + + ++ V NL +I K ++ + Sbjct: 451 VKDFYKHN----LVKSIEDIFNLHKHKD----ELLKLERYAELKVNNLLTNIGKAKDSTF 502 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + +F+LGI+HVG A+ ++K Y ++ E + + + + +G I Sbjct: 503 SKVLFALGIKHVGERAAKLISKQYHNFDELICEKDELAK--------ISAINNIGPKILD 554 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ E+ +N N+ + + + + S ++ N V TG L R + V Sbjct: 555 SLKEYLKNEENVKLLRKFDEI--FNYQKIATVASEKLINLSFVITGKLSN-SRDHYVDLV 611 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G VS+ +S KT ++VG++ GSKL+KA++L + I+NEEQF +L+ Sbjct: 612 EANGGKVSSSVSSKTSFLLVGEDAGSKLDKAKKLNIAIINEEQFNEMLK 660 >gi|255316598|ref|ZP_05358181.1| DNA ligase, NAD-dependent [Clostridium difficile QCD-76w55] Length = 663 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 202/713 (28%), Positives = 335/713 (46%), Gaps = 58/713 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + +++ L +E+ HD Y PII D+EYD L + + +P+ D N Sbjct: 1 MNKVEEKIRDLREEVIKHDLAY-AKGDPIISDTEYDKLYLKLVGLEELYPEY---SDENS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +I L KV H+IP LS +KI ++L KFI ++ +E K Sbjct: 57 PTKRIIDIKVEGLKKVEHTIPMLSQKKINTPDELDKFIRQMNDEL----------LVEDK 106 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG + +Y G RGDG G+D++ + P IP ++ + +E+R E I Sbjct: 107 LDGLTVIAKYNNGVLYEGITRGDGKIGDDITHIVLNTPNIP--KTIPFNDYLEIRLEGII 164 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAK 252 DF +N + + Y + RN ASG +R LN L L K I + Sbjct: 165 PNEDFEMVNSILEEEDK--YKSSRNLASGTVRSLNGCVAKERGLKLIAFELVKADNIIFE 222 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVS----YYNEMKSIRSTLPYDIDGLVYKVDE 308 YE L+ ++ LGF V N I+ ++ + +R L Y +DGLV K + Sbjct: 223 KDYERLEFLKTLGFDVVNYTLFKKNEEDILKLKDYIFSYNQEVRPFLSYKVDGLVIKANS 282 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 L+ LG ++ P+W + KF ++A T+L D I++G++G LTPVA EPV I G I Sbjct: 283 LELRDSLGNTSKYPKWSSAFKFENEEAITKLKDCIIEVGKSGQLTPVALFEPVQIDGITI 342 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATL N +K +DI++GD V+V RA +VIPK+ I +R + + Sbjct: 343 SKATLSNFKNVK-----------DKDIKIGDMVVVARANDVIPKIEHSIKEDRTGEEKEI 391 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P FCP+C +V++ H C AQ ++ HFVS+ + +I+GLG+ Sbjct: 392 EIPKFCPVCNEPIVKEN---------VHYFCVNDDCPAQIEGKIIHFVSKKSLDIDGLGE 442 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + F + I DIF + + + + D V+NL ++I + Sbjct: 443 ESIKLFLDN----GLISSIIDIF----YLKDKKDDLLKLDKYADKKVSNLLENIEASKQA 494 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SL + + L I+ +G ++ LA ++S +N NI + + S++ + G+ + Sbjct: 495 SLSKILHGLSIKLIGGRASKELANKFISMKNIL----NISKNEEEFKQSILSINNFGEEM 550 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKA 666 + +V F+++ RNI + L++ + K + + K +V TG R + Sbjct: 551 SNNLVLFFKDERNIELINKLMEVGFKMEEQIVKVNEEENMLTGKTVVITGKFTDFTREEL 610 Query: 667 QEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 E + G S +S+KTD +I GD GSK KA +LGVK++ E++ L ++ Sbjct: 611 TEKIENEFGGKCSKSVSKKTDFLIYGDKAGSKYNKALELGVKLITEKELLDII 663 >gi|261401085|ref|ZP_05987210.1| DNA ligase, NAD-dependent [Neisseria lactamica ATCC 23970] gi|269208977|gb|EEZ75432.1| DNA ligase, NAD-dependent [Neisseria lactamica ATCC 23970] Length = 827 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 236/868 (27%), Positives = 373/868 (42%), Gaps = 200/868 (23%) Query: 8 PIEALS-IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 P E LS + + + L ++ + YY P + D+EYD L R +A+ P+L Sbjct: 2 PSENLSAMNPTAQRIHELTDLLNRYAYEYYTLDAPSVPDAEYDRLFRELEALELNHPELK 61 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRF 117 P+ P ++GGE +V H +P LSL ++ + ++ F R+ Sbjct: 62 L---PDSPTQRVGGEPLAGFDEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVRNG 118 Query: 118 WQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177 + +EPK DG I++ Y G V AA RGDG +GEDV+ ++ + IP L Sbjct: 119 LN---GEQPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNVKTVANIPLRL 175 Query: 178 SLNI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRY 235 PE+IEVRGEV + K DF ALN +KP+ANPRNAA+G LR+L+ R Sbjct: 176 HGENTPELIEVRGEVLMLKADFAALNKRQADNNQKPFANPRNAAAGSLRQLDSRITAQRK 235 Query: 236 LNFFVHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 L+FF + + + A+ + L + LGF + +G V + E + Sbjct: 236 LHFFPYSIARQQGGFAAEEHIQELAYFQKLGFSLPDGNFGCFKNIDEVLAFYEQMQQKRP 295 Query: 295 L-PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 PY+IDG+V KV+ + Q++LG +R+PRW ++HKF ++A T + ID+QIGRTG +T Sbjct: 296 ELPYEIDGMVVKVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVT 355 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 PVARL+PV +GG +TNATLHN+D + +D+R+GD V+V+RAG+VIP+V Sbjct: 356 PVARLQPVFVGGVTVTNATLHNQDEVSR-----------KDVRIGDTVVVRRAGDVIPEV 404 Query: 414 VDIIVNERHPDA--------------------------------QPFSFPSFCPICQSRV 441 V +I R +P+ P+ CPIC+S + Sbjct: 405 VRVIFERRPMRETAVAVSDSIGHRQDDLFAETPSANQTRSVPLHKPYRLPTHCPICRSEI 464 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 R+ A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + Sbjct: 465 EREEGE------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD--- 515 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYD 540 +R AD++ L + + N+ Sbjct: 516 -LVRHFADLYRLDIPTLQKMKEAADKTVAESDQMPSEGSSVGASGKHKKPPVKWAENILA 574 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 I + L RF+F+LGIRHVG A++LA+ + S + + ++A Sbjct: 575 GIESGKTPELARFLFALGIRHVGERTAKTLAQAFGSLERVRRAPEPVLAC---------- 624 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS--------------------------P 634 +P +G ++A++I F+ ++ LL Sbjct: 625 LPDIGTVVARSIAHFFAQAEQQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGF 684 Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQ---------RHKAQ--EYVTQLGAVV------ 677 I ++ E+ + G LQ + R +AQ + L Sbjct: 685 KISENKAQALWELAGQS--IEG-LQTDKALPTDWQAWRSEAQNAALLENL--KTFFAQMP 739 Query: 678 --------SAILSR----KTDIIIVG--------------DNPGSK-------------- 697 S +++ KT ++ G + G K Sbjct: 740 SEDEAAQRSDGINKAVAGKT-FVLTGTLPTLKRDQAQALIEAAGGKVSGSVSKKTDYVVA 798 Query: 698 -------LEKAQQLGVKIMNEEQFLFLL 718 LEKA LGV +++E + L LL Sbjct: 799 GEAAGSKLEKANALGVSVLSEAELLTLL 826 >gi|325661475|ref|ZP_08150101.1| DNA ligase [Lachnospiraceae bacterium 4_1_37FAA] gi|325472424|gb|EGC75636.1| DNA ligase [Lachnospiraceae bacterium 4_1_37FAA] Length = 660 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 187/709 (26%), Positives = 317/709 (44%), Gaps = 62/709 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L ++++ + + YY S+ II D EYD L + + + N P + Sbjct: 5 ERIKELTKKLNEYRNAYYNESESIISDYEYDKLYDELEKLENE----TGLSFANSPTKTV 60 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G E+ L KV H+ P LSL+K +++DLRKF + L K+DG Sbjct: 61 GFEVKSELEKVKHTHPMLSLDKTKSVDDLRKFA------------SDKDCILSLKMDGLT 108 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + YE G V A RG+G GE ++ IP L++ E+ GE I+ +DF Sbjct: 109 CLLTYENGVLVQAETRGNGDVGEVITHNANVFENIP--LTIEYKGHFEIEGEAIIAYDDF 166 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVH----GLGKTSEIFAKG 253 +N+ + K Y NPRN SG +R+L+ R++ F + + + Sbjct: 167 KKINESLPE--DKKYKNPRNLVSGSVRQLDNKIAAQRHIKFIAWKVPTEVPEGICSNSFL 224 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 M K + + +K+ Y IDGLV ++ + Sbjct: 225 HRLMYTKDLGFEIVPLFTYSGKSDKENLPDMIESLKTKAHDYGYPIDGLVMTYNDIQYGE 284 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG PR I++KF +++ T L +I+ +G++G LTP A EPV I G ++ A+L Sbjct: 285 SLGLTGHHPRHSIAYKFYDEEFETTLKNIEWTMGKSGSLTPTAVFEPVEIDGTMVERASL 344 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN K L+ S GD + V +A ++IP+V D + + PS Sbjct: 345 HNMSIFKDLELSH-----------GDTITVFKANQIIPQVSDNLDRTLN---NLCIPPST 390 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CPIC + + T C+ C + L +L FVSR+ NI+GL ++ L Sbjct: 391 CPICGGKTEIIKDNDTE----VLMCSNS-NCKGKLLGKLSAFVSRNKMNIDGLSEETLSK 445 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F + +DI+ L+ + N+ GFG S+ L DSI K R++ L RF Sbjct: 446 FIAR----GWLTCFSDIYKLKDYYIH----MINMSGFGRKSIDKLLDSIEKSRSVELNRF 497 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I +L I VG A+ ++K+ +F + +I N + +G+ +Q I Sbjct: 498 IAALSIPGVGDSTAKDISKHCE--YDFDTFVMRLIDKYNWSI-----IDGIGEKTSQQIN 550 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQ 672 E+ + N LL+ + P + + + K V TG + + + R + Q+++ Sbjct: 551 EWIDDSSNREDFRKLLQTIIPVKPNEGNSTDNTLSGKNFVITGDVTQFKNRKELQKFIES 610 Query: 673 LGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G V+ ++ KT+ +I ++ SK +KA++LG+ I++E++FL ++ Sbjct: 611 KGGKVTGSVTSKTNWLINNDVESTSSKNKKARELGIPIISEKEFLEMVN 659 >gi|295688860|ref|YP_003592553.1| DNA ligase, NAD-dependent [Caulobacter segnis ATCC 21756] gi|295430763|gb|ADG09935.1| DNA ligase, NAD-dependent [Caulobacter segnis ATCC 21756] Length = 783 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 249/614 (40%), Positives = 353/614 (57%), Gaps = 24/614 (3%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 LIP+ L+ QA +EL L E++ HD Y+Q P I D++YDALKRR I FP L Sbjct: 3 LIPVADLTEAQAVEELERLADELTRHDLAYHQQDNPTISDADYDALKRRNLDIETRFPHL 62 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R N P ++G V H +P LSL+ ++ ++ +F R+ RF + + Sbjct: 63 VRD---NSPSMRVGAARAEQFSPVRHGVPMLSLDNAFSNDEAEEFDARVRRFLRLSPSET 119 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184 + +T EPKIDG ++RYEKG V A RGDG +GEDV+A +R I IP L + P++ Sbjct: 120 LAYTAEPKIDGLSASLRYEKGVLVQGATRGDGQTGEDVTANLRTIADIPHRLKGSGWPDV 179 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL 243 IEVRGEVY+ F A N G++ YANPRN A+G LR+++ T R L FF + Sbjct: 180 IEVRGEVYVELEAFAAFNKAAEDAGQRTYANPRNFAAGSLRQIDSTISAQRPLRFFGYAW 239 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G SE FA GQ+E L+K+R GF R+ G++ Y E +++R TL +DIDG+ Sbjct: 240 GLVSEPFAGGQWEALEKLRSWGFVTTAPPARRVENAQGLLDVYAEFEALRPTLNFDIDGV 299 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 VYKVD+ LQ++LG +RSPRW I+ KF ++A T L ID+Q+GRTG +TPVARL+PV Sbjct: 300 VYKVDDLELQRRLGFVSRSPRWAIARKFPAQKARTLLEAIDLQVGRTGAITPVARLKPVT 359 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 +GG ++TNATLHN D I+ L D R+GD V+V+RAG+VIP++V++ ++ R Sbjct: 360 VGGVVVTNATLHNGDEIERL-----------DARIGDTVVVQRAGDVIPQIVEVALDARP 408 Query: 423 PDAQ-PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 A P+ FP CP + +G+ RCTG AC Q++E L+HFVSR AF Sbjct: 409 DPAPEPYVFPHECPCPLKTPLAREVNASGQESVVRRCTGEFACPFQRVEHLRHFVSRRAF 468 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +IEGLG++QL FF I PADIF L R + + G+G+ SV NL Sbjct: 469 DIEGLGEKQLQAFFDE----GWITEPADIFKL-ARDEEKLAALREREGYGETSVANLARG 523 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII-AHNNDDWLSLIR 600 I RR I+++R I+ LG R +G + LA+ + +++ + A + +L L Sbjct: 524 IEARRTITMDRMIYGLGARDIGETTSTVLARNFDRFEDLQEAAEKAARALPGETYLELST 583 Query: 601 VPLVGDIIAQAIVE 614 P VG ++VE Sbjct: 584 APGVGPKALDSLVE 597 Score = 203 bits (517), Expect = 8e-50, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 88/164 (53%), Gaps = 2/164 (1%) Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA-HNNDDWLSLIRVPLVGDIIAQAIVE 614 + + +LA+ Y ++ FA+ + + DD+L L + VG + AQ++ Sbjct: 619 GHAVPKLTKPARAALAQRYGTWDAFAEGLAAAASGAPGDDYLHLAAIDGVGPVAAQSLAR 678 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F+ N V L+ E+ K + + K +VFTG L+K+ R +A+ LG Sbjct: 679 FFAEDHNRQKVANLVAELDIQPVEKPK-TDTAVAGKTIVFTGALEKMTRDEAKAQAEGLG 737 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A V++ +S+KTD+++ G GSKL+ A +LG+++M E+++L L+ Sbjct: 738 AKVASSVSKKTDLVVAGPGAGSKLKTATELGIQVMTEDEWLALV 781 >gi|262341099|ref|YP_003283954.1| DNA ligase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272436|gb|ACY40344.1| DNA ligase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 681 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 200/704 (28%), Positives = 342/704 (48%), Gaps = 52/704 (7%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 L +E+S ++ YY + I D +D + +P+ DP P KIG E+ Sbjct: 27 QLRKELSKYNYQYYNFDTSDISDFHFDKKLEELFFLEKKYPEF---YDPTSPTIKIGAEI 83 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 + H SL+K ++ ++L + +I + ++ F E K DG I + Sbjct: 84 HEPSTVFYHKYKMYSLQKTYSKKELIIWKKKISKSI-----HTFSFVCELKYDGVSINLI 138 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLAL 201 Y+ G A RG+G GEDV+ I+ I +P L N P +E+RGEV+++ +F+ + Sbjct: 139 YKNGFLTNAGTRGNGEKGEDVTENIKTIKHVPLKLRGNNYPAYLEIRGEVFLTTKNFIEI 198 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 N + I G+ PYANPRN ASG L+ + + + F + + QYE L+ + Sbjct: 199 NKKRIKSGKTPYANPRNTASGTLKIQDRKKVRQRNLFCIAFHVVGKNLPFDTQYESLKHI 258 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 + GF + R + + + + LPY IDG+V KV+E+ Q LG + Sbjct: 259 KNWGFQIPETARFCKNMEEVFHFIDFWNLWKDKLPYQIDGIVIKVNEYQKQSLLGFTNKY 318 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW I++KF +K + T+LL + Q+GRTGI+TPVA + P+ I G +I L+N+ +I+ Sbjct: 319 PRWAIAYKFRQKLSETKLLSLTFQVGRTGIVTPVANVVPILISGTIIKRVALYNDSFIQK 378 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 + I GD +L+++ G +IPKV I + +R A P F CP C S + Sbjct: 379 M-----------GIYHGDTLLLEKGGNIIPKVTRINIKKRSSQAFPVFFLKKCPSCNSVL 427 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 ++ C +Q++E+++HFVS A NI+ +G + + +K Sbjct: 428 TKNNE---------LFYCTNQNCFSQRIEKIRHFVSVKAMNIQKIGNEMIKKLYKK---- 474 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 + +++ L++ ++ I G + ++ ++I K + R +++LGIRH Sbjct: 475 GFLYSFYNLYELKKE------ELLQIDGVKEKLADSIINNIKKSKENPFSRVLYALGIRH 528 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 VG +I++ L K +L + ++ LI + +G I ++I+ ++ N Sbjct: 529 VGEDISKKLTKQFLDINSLMHA----------NYDHLISISGIGKKITESIITYFSIYEN 578 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 AV+ L+K +K S +E K VFTG L + RHKAQ V LG V + Sbjct: 579 RHAVQMLIKYGLHFSKCSKKLSS--LEGKSFVFTGKLSCMTRHKAQNMVENLGGKVYNTV 636 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQYNTT 724 + + + I++G N GSK +K+ + V+I+ E FL +L++ Sbjct: 637 NNQINFIVIGKNFGSKFKKSMKKNHVQILTENLFLDMLKKAKKE 680 >gi|329889238|ref|ZP_08267581.1| DNA ligase, NAD-dependent [Brevundimonas diminuta ATCC 11568] gi|328844539|gb|EGF94103.1| DNA ligase, NAD-dependent [Brevundimonas diminuta ATCC 11568] Length = 774 Score = 398 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 260/606 (42%), Positives = 361/606 (59%), Gaps = 28/606 (4%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 P+E L+ QAR+EL L E++ HD YY + P I D++YD LKRR A+ AFP L Sbjct: 5 FTPVETLTEAQAREELDRLSAELARHDALYYADAAPEISDADYDELKRRALALEAAFPAL 64 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 + P P ++G ++ +V H +P LSL+ ++ ++R F+ RI RF + D Sbjct: 65 SG---PISPSQRVGAPVSTQFAEVRHGVPMLSLDNAFDEGEVRDFVARIARFLKLPGDEP 121 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184 I F EPKIDG ++RYEKG V A RGDG +GEDV+A +R + +IP+ L+ + P++ Sbjct: 122 IAFVAEPKIDGLSASLRYEKGVLVQGATRGDGKTGEDVTANLRTLDSIPQTLAGSGWPDV 181 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 IE+RGEVY F A N A G++ YANPRN A+G LR+ +P R L FF + Sbjct: 182 IEIRGEVYAPNAAFDAFNAAAEAEGKRTYANPRNFAAGSLRQKDPKITALRPLTFFAYAW 241 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G+TS FA+ Q L+ R GF VN+ + G++ Y +++ RS L YDIDG+V Sbjct: 242 GETSAPFAETQAGALEAFRSWGFQVNDRSARVEGADGLIGVYQTLETDRSRLGYDIDGVV 301 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YKVD Q++LG ARSPRW I+HKF +QA+T L IDIQ+GRTG LTPVARL PV + Sbjct: 302 YKVDRLDWQQRLGFIARSPRWAIAHKFPAQQATTVLEGIDIQVGRTGSLTPVARLHPVTV 361 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++ NATLHNED I +D+RVGD V+++RAG+VIP++V ++ R Sbjct: 362 GGVVVRNATLHNEDEIAR-----------KDVRVGDTVVLQRAGDVIPQIVGVVETLRPD 410 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 DAQP+ FP+ CP+C S VR+ + RCTGGL C AQ +ERLKHFVSR AF+I Sbjct: 411 DAQPYIFPTVCPVCGSEAVREGDE------VKRRCTGGLICDAQIVERLKHFVSRRAFDI 464 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGLG++QL F I+ PADIF L R + + G+G+ SV NL I+ Sbjct: 465 EGLGEKQLIAFHAR----GWIKEPADIFRL-ARDEEKLALLRAEDGYGETSVGNLIAGID 519 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE-INNIIAHNNDDWLSLIRVP 602 RR ISL+R IF LG+R +G + + L++ + S+ F + +DDW +L Sbjct: 520 ARRVISLDRLIFGLGVREIGEQTSLVLSRAFGSWTAFRDACMAAASGLASDDWKTLAATH 579 Query: 603 LVGDII 608 + + Sbjct: 580 AISTRV 585 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 83/164 (50%), Gaps = 1/164 (0%) Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD-WLSLIRVPLVGDIIAQAIVE 614 +L + A RSLA+ + + + D + V VG + A+A+ Sbjct: 610 ALAFPGMAAPARRSLAEISEGWSDLTRWAAVARDEGPSDMLNQIAGVSGVGPVAAEALAH 669 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F+ P N+ V+ALL E+ S + K +VF+G+L++ R +A+ LG Sbjct: 670 FFHEPHNLQVVDALLAELERVEDVAAPVTDSPVAGKTVVFSGSLERFTRDEAKARAESLG 729 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A VS +S+KTD ++ G GSKL+ A++ GV ++ E+++L L+ Sbjct: 730 AKVSGSVSKKTDYVVAGPGAGSKLKDAEKHGVTVLTEDEWLALI 773 >gi|240141492|ref|YP_002965972.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1] gi|240011469|gb|ACS42695.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1] Length = 814 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 254/629 (40%), Positives = 371/629 (58%), Gaps = 31/629 (4%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 +EALS + A+ + L + I + YY P + D+EYDAL++ +AI Sbjct: 3 STPLSAAVEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEAR 62 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP L + + +G + + KV H++P LSL + ED+ +F+ R+ RF Sbjct: 63 FPALTGTTEA---SAGVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNLP 119 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 + ++ FT EPKIDG +++RYE G+ V AA RGDG GE+V+A + IP LS Sbjct: 120 AEEAVAFTAEPKIDGLSLSLRYEAGRLVTAATRGDGEVGENVTANALTVDDIPETLSGEN 179 Query: 182 -PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 PE++EVRGEVY+S DF A+N A G+ +ANPRNAA+G LR+L+P +R L FF Sbjct: 180 IPEVLEVRGEVYLSHEDFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFF 239 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ SE F Q +L++ R G PVN + + ++++Y +++ R+ L YDI Sbjct: 240 AYAWGEVSEPFTDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRTIEAERAGLGYDI 299 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD+ Q++LG +R+PRW ++HKFA ++A T LL IDI +GRTG L P+ARL+ Sbjct: 300 DGVVYKVDDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARLK 359 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG +++NATLHNE Y++G+ A G+ +R GRDIRVGD V+V RAG+VIPKV D++++ Sbjct: 360 PVTVGGVVVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVRDVVID 419 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R DA P+ FP CP C SR VR+LNP+T KL A RCTGGL C AQ +ERLKHFVSR+ Sbjct: 420 KRPADAVPYVFPDTCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRN 479 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR---------------------QQ 518 F++EG G+ ++ F+ A ++ PAD+F L+ + Sbjct: 480 GFDLEGFGQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARREALSAQRRAEGEP 535 Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578 + D ++ NL S++ RR I L RF+F+LGI +G A++LAK + Sbjct: 536 APKKPTKKKGEEEDKAIKNLLASLDARRTIPLNRFLFALGIPQIGESTAKALAKRFPDMP 595 Query: 579 NFAQEINNII-AHNNDDWLSLIRVPLVGD 606 + DWL L +P +G Sbjct: 596 ALMAALAAATREQAGQDWLELSALPRIGP 624 Score = 179 bits (455), Expect = 1e-42, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 82/154 (53%), Gaps = 2/154 (1%) Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL-VGDIIAQAIVEFYQNPRNICAVE 626 ++ +Y S + + D L +G + ++++F+ P N AV Sbjct: 661 EAVLAHYGSEAEADAALERAASQRPGDAYRLFADDGEIGPVATDSLIQFFSEPHNDAAVR 720 Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 ALL+EV + ++ K +VFTG+L+K+ R +A+ +LGA VS +S KTD Sbjct: 721 ALLEEVGTEPLATTTSAAAF-AGKTVVFTGSLEKMTRSEAKATAERLGAKVSGSVSAKTD 779 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +++ G GSKL+ A++ GVK+++E+ +L +L + Sbjct: 780 LVVAGPGAGSKLKDAEKHGVKVVSEDDWLAMLAE 813 >gi|260587930|ref|ZP_05853843.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583] gi|331084525|ref|ZP_08333626.1| DNA ligase [Lachnospiraceae bacterium 6_1_63FAA] gi|260541457|gb|EEX22026.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583] gi|330401233|gb|EGG80824.1| DNA ligase [Lachnospiraceae bacterium 6_1_63FAA] Length = 650 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 181/704 (25%), Positives = 308/704 (43%), Gaps = 66/704 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K + L + ++ YYQ + I+ + EYD L + P + Sbjct: 5 KRMKELLKLLTEASKAYYQEDREIMSNFEYDKLYDELVQLERE----TGVTLAGSPTASV 60 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G E L K H P LSL+K +IE LR FI L K+DG Sbjct: 61 GYEALDELPKEAHESPMLSLDKTKDIEALRAFI------------GEQKSLLSWKLDGLT 108 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I + Y +GK A RG+G GE ++ + IP L + + +RGE I+ +DF Sbjct: 109 IVLTYHEGKLQKAVTRGNGTVGEVITGNAKVFKNIP--LQIAYQGELVLRGEAIITYSDF 166 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG-QYE 256 +N I Y NPRN SG +R+LN R +NF+ L K + + + + Sbjct: 167 EKINA-QIEDVDAKYKNPRNLCSGSVRQLNNEITAKRNVNFYAFSLVKAEGVDFQNSREQ 225 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++ GF V + + S + DGLV D+ + + LG Sbjct: 226 QFCWLKEQGFDVVEYRVVTGETLD--EAMDYFSNQVSKNDFPSDGLVVLYDDIAYGESLG 283 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ PR + K+ ++ T L +I+ RTG++ PVA EP+ + G ++ A++HN Sbjct: 284 STAKFPRNAYAFKWKDEIRETVLKEIEWSASRTGLINPVAIFEPIELEGTTVSRASVHNI 343 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 +K L + +GD++ V +A +IP++ + + + + Sbjct: 344 SIMKELQ-----------LGIGDKIQVYKANMIIPQIAENLTRSGNLEIPKI-------- 384 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 V + C A++++ FVSRDA NI+GL + L+ F Sbjct: 385 --CPVCKKEARVIKTNEVEALYCMNEECQAKKIKSFTLFVSRDAMNIDGLSEATLEKFIL 442 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 IR DIF +++ + +I + GFG S NL S+ K ++ +L R ++S Sbjct: 443 K----GFIRDFGDIFEIEKYKD----EILEMEGFGQKSYENLIASLEKAKHTTLPRVLYS 494 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI ++G A+ + K +I +IA N + + +G +IA+A E++ Sbjct: 495 LGIANIGLANAKLICKE------LQYDIEKMIAANE---EEISSIEGIGPVIAKAYTEYF 545 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGA 675 N N+ LL + E+N+S +E K+ V TG++ R + +E + + G Sbjct: 546 ANEENLKKFRHLLSHLELEEVTREENLS--LEGKQFVITGSVVHFANRAQLKEEIEKRGG 603 Query: 676 VVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ ++ KT +I D + SK +KA++LG+ I++E+ F+ + Sbjct: 604 KVTGSVTSKTHYLINNDTTSNSSKNKKAKELGIPILSEDDFMKM 647 >gi|218532981|ref|YP_002423797.1| DNA ligase, NAD-dependent [Methylobacterium chloromethanicum CM4] gi|254781363|sp|B7KU78|DNLJ_METC4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218525284|gb|ACK85869.1| DNA ligase, NAD-dependent [Methylobacterium chloromethanicum CM4] Length = 814 Score = 396 bits (1016), Expect = e-107, Method: Composition-based stats. Identities = 253/622 (40%), Positives = 370/622 (59%), Gaps = 31/622 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +EALS + A+ + L + I + YY P + D+EYDAL++ +AI FP L + Sbjct: 10 VEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEARFPALTGT 69 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + +G + + KV H++P LSL + ED+ +F+ R+ RF + ++ F Sbjct: 70 TEA---SAGVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNLPAEEAVAF 126 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEV 187 T EPKIDG +++RYE G+ V AA RGDG GE+V+A + IP LS IPE++EV Sbjct: 127 TAEPKIDGLSLSLRYEAGRLVTAATRGDGEVGENVTANALTVDDIPETLSGEGIPEVLEV 186 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGE+Y+S DF A+N A G+ +ANPRNAA+G LR+L+P +R L FF + G+ Sbjct: 187 RGEIYLSHEDFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFFAYAWGEV 246 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE F Q +L++ R G PVN + + ++++Y +++ R+ L YDIDG+VYKV Sbjct: 247 SEPFTDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRAIEAERAGLGYDIDGVVYKV 306 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q++LG +R+PRW ++HKFA ++A T LL IDI +GRTG L P+ARL+PV +GG Sbjct: 307 DDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARLKPVTVGGV 366 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++NATLHNE Y++G+ A G+ +R GRDIRVGD V+V RAG+VIPKV D+++ +R DA Sbjct: 367 VVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVRDVVIEKRPADAV 426 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP CP C SR VR+LNP+T KL A RCTGGL C AQ +ERLKHFVSR+ ++EG Sbjct: 427 PYVFPDTCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRNGLDLEGF 486 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRR---------------------QQTSTTKIE 525 G+ ++ F+ A ++ PAD+F L+ + + Sbjct: 487 GQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARREALSAQRRTEGEPAPKKPTK 542 Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 D ++ NL S++ RR I L RF+F+LGI +G A++LAK + + Sbjct: 543 KKGEEEDKAIKNLLASLDARRTIPLNRFLFALGIPQIGESTAKALAKRFPDMPALMAALA 602 Query: 586 NII-AHNNDDWLSLIRVPLVGD 606 DWL L +P +G Sbjct: 603 AATREQAGRDWLELSALPRIGP 624 Score = 179 bits (455), Expect = 1e-42, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 82/154 (53%), Gaps = 2/154 (1%) Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL-VGDIIAQAIVEFYQNPRNICAVE 626 ++ +Y S + + D L +G + ++++F+ P N AV Sbjct: 661 EAVLAHYGSEAEADAALERAASQRPGDAYRLFADDGEIGPVATDSLIQFFSEPHNDAAVR 720 Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 ALL+EV + ++ K +VFTG+L+K+ R +A+ +LGA VS +S KTD Sbjct: 721 ALLEEVGTEPLAATTSAAAF-AGKTVVFTGSLEKMTRSEAKATAERLGAKVSGSVSAKTD 779 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +++ G GSKL+ A++ GVK+++E+ +L +L + Sbjct: 780 LVVAGPGAGSKLKDAEKHGVKVVSEDDWLAMLAE 813 >gi|294155884|ref|YP_003560268.1| DNA ligase (NAD(+)) [Mycoplasma crocodyli MP145] gi|291600422|gb|ADE19918.1| DNA ligase (NAD(+)) [Mycoplasma crocodyli MP145] Length = 657 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 189/706 (26%), Positives = 337/706 (47%), Gaps = 53/706 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 ++ + L +I +++ YY +P + D+EYDAL + I P + + P Sbjct: 3 QKVIDKYQELIAKIKQYNNEYYNLDQPSVSDAEYDALYKELLEIEKQNPKIINQ---DSP 59 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 IGG + K TH LSL+K + +++ KF I++ + + F LEPK+ Sbjct: 60 SQIIGGFASSKFSKYTHQKLMLSLDKATHFDEITKFYNDIFKVIKTDNKG---FFLEPKV 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I++ YE G A RGDG GEDVS + I + + + IE+RGE+Y+S Sbjct: 117 DGLSISLHYENGILQRAVTRGDGLVGEDVSENVLQIKEVKH--KIAYKKPIEIRGEIYLS 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKG 253 K +F LN ++ G K +ANPRNAASG LR+L+ R L ++ L Sbjct: 175 KENFNKLNKKIEDQGLKSFANPRNAASGTLRQLDKNIVRERNLGIVLYELVDPLVHKITS 234 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q + + + LGFP + I++Y E I++ L YD DGLV K ++ K Sbjct: 235 QDQSISFINQLGFPTQKNNKLLYELDDILNYIEEFGEIKNNLDYDCDGLVIKYNDIEQWK 294 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG ++ P++ I++K+ ++A TR+ I I GRTG + +A +EPV + ++++ ATL Sbjct: 295 LLGFTSKFPKYAIAYKYQVEEAITRINKISISTGRTGKINYLAHVEPVELNQSIVSKATL 354 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN +YI+ L ++ +GD V++ +AGE+IPKV ++ + F Sbjct: 355 HNYNYIEEL-----------NLNIGDDVVIIKAGEIIPKVRELKQKKSIG---VFPKLIN 400 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 C C+S++ + + C + + L +F S+ +I+G+G + + Sbjct: 401 CLSCKSKLEYIDDNLE-------QYCLNKNCQEKIINSLIYFASKPCLDIKGMGDKVVKI 453 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 +++ + D F L ++ K+ + F + V NL ++I + L + Sbjct: 454 LYEN----GLVLEIKDFFELHNKRD----KMLQLPSFKEKKVDNLINAIETIKKAQLHKV 505 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I +LG++++G ++ ++ IN + + L + +G +I Sbjct: 506 IIALGMKNIGTRSSKLISTK----------INKLSDLLTYNIDELENIDDIGPKSIASIK 555 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 EF +N + L I ++ ++ +++ N TGTL K R + + + Sbjct: 556 EFLSEDKNKELITFLDNY---FIQVNDSSIGNKLVNLSFSITGTLLK-PRDYFVDLIEKN 611 Query: 674 GAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLL 718 G + + KT+ +IVG+NPGS K+ KA+ LG +++ ++F ++ Sbjct: 612 GGQFHKLPTSKTNYLIVGENPGSAKINKAKILGTQVITIDEFEKMI 657 >gi|319787332|ref|YP_004146807.1| DNA ligase, NAD-dependent [Pseudoxanthomonas suwonensis 11-1] gi|317465844|gb|ADV27576.1| DNA ligase, NAD-dependent [Pseudoxanthomonas suwonensis 11-1] Length = 788 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 215/651 (33%), Positives = 349/651 (53%), Gaps = 55/651 (8%) Query: 12 LSIEQA-RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ++ A + L + I + Y++ P I D++YDAL R +A+ P+LA Sbjct: 1 MTSSPAPADRAAELRRRIEDANRRYHELDAPDITDAQYDALVRELEALEREHPELAA--- 57 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G + VTH++P LSL + E++ F+ RI + ++ +D + F+ Sbjct: 58 EDSPTRRVGATPSGRFAAVTHAVPMLSLGNAFTDEEVADFVRRIRQRLER-EDGDLAFSA 116 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189 EPK+DG I++RYE G FV A RGDG +GEDV+A +R I IP L+ P ++EVRG Sbjct: 117 EPKLDGLAISLRYEDGVFVQGATRGDGATGEDVTANLRTIGDIPHQLAGKGWPRVLEVRG 176 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS- 247 EVY+ + DF N+ G K ANPRN A+G LR+ +P R L+FF +G+G Sbjct: 177 EVYMGRADFERWNEHARLHGGKVLANPRNGAAGSLRQQDPKITAQRPLSFFAYGVGLVEG 236 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 L+++R GFPV++ V+ G++ YY + R LP+DIDG+VYK+D Sbjct: 237 GELPPSHSATLRQLRDWGFPVSDLVQVVRGLDGLLGYYRHIGEARDGLPFDIDGVVYKLD 296 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + Q+++G +R+PRW I+HKF ++ +T + +++ +GRTG +TP A ++PV +GG Sbjct: 297 DQEGQREMGFVSRAPRWAIAHKFPAQEQTTVVESVEVSVGRTGAVTPWALMQPVLVGGVT 356 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +T ATLHN D++ L D+R GD V+V+RAG+VIP+VV +++++R PDA+P Sbjct: 357 VTRATLHNADHVARL-----------DVRNGDTVIVRRAGDVIPEVVQVVIDQRPPDARP 405 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 +S P+ CP C S VVR+ A RC+G L+C AQ ++ + HF SR A +I+GLG Sbjct: 406 WSMPATCPACGSEVVREEG------AAVWRCSGELSCPAQLVQSVFHFASRRAMDIDGLG 459 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL----------------GFG 531 ++ ++ + +R +D++ L + + Sbjct: 460 ERYIESLAE----FGYLRDVSDLYRLTLDDLLEMKRRADEREGTTPVAPAKSGVKSGKVA 515 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 NL +I+ RN +L RF+++LGI+HVG A++LA++ + Sbjct: 516 TRWADNLLAAIDTSRNTTLARFLYALGIQHVGESTAKALAQWLGDLELIRHLP------- 568 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642 W R+P +G +A+A+ F+ P N ++ LL+ H + Sbjct: 569 ---WPLFRRLPDIGGEVARALGHFFDQPGNQAVIDRLLERGVRIGDSHAPD 616 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 606 DIIAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 A A+V + + P N + + V + + S +E +V TGTL + Sbjct: 669 PETASALVAWLEAPGNAELLLRSAQAQARVRALLPAADAVASGPLEGMTVVLTGTLSSMS 728 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R +A+E + LGA + +S+KT ++ G+ GSKL KA +LG+++ +E + L L+Q+ Sbjct: 729 RDEAKEKLEALGAKAAGSVSKKTSFVVAGEAAGSKLAKAGELGIEVWDEARLLAFLEQH 787 >gi|291320206|ref|YP_003515467.1| DNA ligase [Mycoplasma agalactiae] gi|290752538|emb|CBH40510.1| DNA ligase [Mycoplasma agalactiae] Length = 654 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 207/709 (29%), Positives = 346/709 (48%), Gaps = 55/709 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E+A++ + SL + I+ + YYQ +KP + D EYD + + PDL + Sbjct: 1 MQKEKAKELIKSLVETINQWNYEYYQLNKPSVSDLEYDKALLELEKLEKEHPDLILN--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P +IG + K H P LSL K +N +D+ FI I + +I F +E Sbjct: 58 NSPTFRIGSFASEKFTKFVHQKPMLSLAKAYNYDDINSFINNISKIV---PTENINFNIE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG I + Y++GK V AA RGDG GEDV+ I I +IP +N +EVRGEV Sbjct: 115 PKIDGLSIALHYKQGKLVKAATRGDGSEGEDVTENIYQIKSIP--KLINYLNDLEVRGEV 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 +I+KNDF +N+ + A + + + R L+ F++ + + + Sbjct: 173 FITKNDFKKINESNNFANARNAA-----SGTLRQLDANIVAERNLSAFLYEIVEPEKHGI 227 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q+E L+ M+ L FP N + + N+ I++ L YD DGLV K+D+ + Sbjct: 228 YYQHEALEFMKNLNFPTNPFSKVV-EIEELEESINDFAEIKNKLDYDADGLVIKLDDLQM 286 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +LG+ ++ P+ I+ K+ + AS++++DI +GRTG +T +A + PV + + A Sbjct: 287 WDKLGKTSKFPKHSIAFKYDVEIASSKIIDILTSVGRTGKITYIANILPVLLNQTTVKAA 346 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN ++IK + +I + D V + +AGE+IPKV+ + + + D + Sbjct: 347 TLHNHNFIKDM-----------NININDEVNIIKAGEIIPKVISLKEEKNYVD--YYKKA 393 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C S++V + C + + + HF SR+ NI GLG + Sbjct: 394 TNCPSCGSQLVEFEG-------IVDQFCTNDECPDKNINNIYHFASRNCLNIVGLGLSTV 446 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F+ I+ DIF L R + ++ + + D+ V N+ +SI +N Sbjct: 447 KDFYPK-----FIKNIKDIFDLHRHRA----ELIKLPRYRDLKVDNILNSIESAKNKKFS 497 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + IF+LGI+H+G A+ +A Y ++ + + L L +G I ++ Sbjct: 498 KVIFALGIKHIGQRAAKLIADNYANFAELLDD---------HNLLKLQNTKNIGPKIIES 548 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 ++EF +P N + L + K +S+ + V TG L + R + + Sbjct: 549 LIEFISSPANQDLLAFLDAI--FNYEGKAKVISTILSGYTFVITGVLSE-PRSHFVKLIE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + VS+ +S KT ++ G + GSKLEKA + G K++NEEQF L++Q Sbjct: 606 EHSGNVSSAISSKTSYLLAGSDAGSKLEKAYKTGTKVINEEQFYDLIKQ 654 >gi|302385528|ref|YP_003821350.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1] gi|302196156|gb|ADL03727.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1] Length = 672 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 169/712 (23%), Positives = 290/712 (40%), Gaps = 57/712 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 ++ L + ++ + + YY ++ P + D YD L + + N P Sbjct: 3 ANIYEKQRDLTERLNIYREQYYDHNAPSVSDEIYDRLFDKLKELEQQ----TGIHMANSP 58 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +G + L K H IP LSLEK + EDL F L K+ Sbjct: 59 TQTVGYPVMSKLEKTIHEIPLLSLEKTKSSEDLELF------------QGKHQVMLMLKL 106 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG + + YE G+ V A RGDG GE ++ R I IP + + + V GE +I Sbjct: 107 DGLTVKLTYENGRLVEVATRGDGDEGEIITHNTRGITGIP--VQIPYSGRLVVTGEAFIR 164 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKG 253 DF L +++ +PY N RN A+G +R L+ R + F G+ + Sbjct: 165 PVDFEILKIKLLDSTGRPYKNGRNLAAGSVRLLDAVACRDRKVVFMPFGVLEGYPDMTTK 224 Query: 254 -QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q ++ T I +++ IDG+V ++ + Sbjct: 225 SQKLSQLPALGFSICKFLVSKRPLTLAEIEQAIQQLQQFAKANGIPIDGIVMSYNDIAFS 284 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 K G + ++ KF ++ +RLL I+ R+G + PVA + V I G ++ A+ Sbjct: 285 KSCGRTGHHYKDGMAFKFEDELYESRLLHIEWNTTRSGEIAPVAVFDTVEIDGCEVSRAS 344 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN +I+ L+ + G+R+LV + +IP + D +R P Sbjct: 345 LHNLTFIESLE-----------LMPGNRILVSKRNMIIPHIEDN--LDRGGFLLGSVIPH 391 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHR----CTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 CP C + + C ++L R HFVS+ A +I GL + Sbjct: 392 ECPCCGQSTRIHVGEERSVEGEVRTTKTLFCDNPDCETRRLRRFVHFVSQKAMDIAGLSE 451 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 L+ I DI+ L R + +I + GFG+ S NL+D+I + RN Sbjct: 452 ATLEKLIGR----GWIHTYMDIYRLDRHRG----EIVRMDGFGEKSWQNLWDAIQQSRNT 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 + ER++ ++ I +G +++L K + S +F + ++P G+ Sbjct: 504 TFERYVIAMDIPMIGNSASKALRKEFNGSLSDFEMAVYQGY--------DFTQLPDFGET 555 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRH 664 + I +++ NI + + L K + E + S +V TG ++ R Sbjct: 556 LHNNIRDWFSLEENIYSWDELQKLLCIEKKLAETVPSDEDSAFVGCTIVVTGKVEPYTRE 615 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + + LGA +S KTD ++ G+ G KL KA++LG+ ++ +F Sbjct: 616 GINDLIESLGAHPGNSVSSKTDYLVCGEKAGGKLMKARELGIPVLTPAEFFQ 667 >gi|167761341|ref|ZP_02433468.1| hypothetical protein CLOSCI_03749 [Clostridium scindens ATCC 35704] gi|167661007|gb|EDS05137.1| hypothetical protein CLOSCI_03749 [Clostridium scindens ATCC 35704] Length = 649 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 184/705 (26%), Positives = 308/705 (43%), Gaps = 65/705 (9%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L + ++ YYQ ++ I+ + EYD L + N P +G Sbjct: 1 MQELVELLNKAGRAYYQNAEEIMSNYEYDRLYDELLKLEEE----LGLTLSNSPTANVGY 56 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 E+ L K H P LSL+K ++E+L++F+ + K+DG I Sbjct: 57 EVLSELPKERHERPMLSLDKTKDVEELKRFV------------GDQKALMSWKMDGLTIV 104 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + Y +G+ A RG+G GE V+ R IP L + + +RGE I DF Sbjct: 105 LTYREGRLFKAVTRGNGEVGEVVTNNARVFKNIP--LQIAYQGQLILRGEAVIGYKDFEK 162 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY-EML 258 +N+E+ V Y NPRN SG +R+LN R + F+ L + + + Sbjct: 163 INEEIEDV-DARYKNPRNLCSGSVRQLNNEITAKRNVKFYAFSLVEAEGVDFYNSRARQM 221 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + GF V + + + DGLV D+ + + LG Sbjct: 222 NWLIEQGFEVVEFQEVTRDTVEAEVL--KFSEKIAQNDFPSDGLVLVYDDIAYGQSLGRT 279 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++ PR + K+A++ TRLL+I+ RTG++ PVA EPV + G ++ A++HN Sbjct: 280 SKFPRDSFAFKWADELRETRLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRASVHNISI 339 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 ++ L+ + VGD + V +A +IP++ + D Sbjct: 340 MEELE-----------LGVGDTIEVYKANMIIPQIARNLTRSGVKDIP----------KN 378 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 V R A C A+ ++ FVSRDA NIEGL + L+ F Sbjct: 379 CPVCRGRTEVRQVSNAKALYCINPDCQAKHVKSFALFVSRDALNIEGLSEATLEKFIS-- 436 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 IR ADIF L R ++ +I+ + GFG+ S NL DSI K R +L R I+ LG Sbjct: 437 --MGYIREYADIFHLDRYRE----EIQTMEGFGEKSYQNLIDSIEKARTTTLPRVIYGLG 490 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I ++G A+ + K + ++ A L + +G++IA A V+++ + Sbjct: 491 IANIGLANAKMICKEFQ---------YDLEAMLKATVEELNAISGIGEVIATAFVDYFSD 541 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVV 677 + + LL E+ + + V TG+++ R++ +E + LG V Sbjct: 542 NVHRKRLRNLLAELII-PKEEADSAAQIFNGVNFVITGSVEHFANRNEVKELIESLGGKV 600 Query: 678 SAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + ++ KT+ +I D + SK +KA LG+ I++EE FL ++++ Sbjct: 601 TGSVTSKTNYLINNDVTSTSSKNKKANDLGIPIISEETFLKMVEE 645 >gi|226325717|ref|ZP_03801235.1| hypothetical protein COPCOM_03530 [Coprococcus comes ATCC 27758] gi|225205841|gb|EEG88195.1| hypothetical protein COPCOM_03530 [Coprococcus comes ATCC 27758] Length = 687 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 176/695 (25%), Positives = 292/695 (42%), Gaps = 64/695 (9%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 +++S+ K + +L ++++ + YY P++ D+EYD L + + Sbjct: 25 DSMSV----KRIKNLVKQLNEYRHAYYNQDAPLVSDAEYDRLFDELKELEEQTGFILS-- 78 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 N P +G L KVTH IP LSLEK I +L F+ + F Sbjct: 79 --NSPTQTVGYYPVSELAKVTHPIPLLSLEKTKLISELLDFMK----------GQEVLFM 126 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 K+DG + YE G+ + A+ RGDG GED++ I A +P L++ E + + G Sbjct: 127 --LKLDGLTTKLIYEDGRLIQASTRGDGEVGEDITHNIPAFLNVP--LTIPHKERLVITG 182 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E +I NDF L D + KPY N RN ASG +R L+P + R + F + + E Sbjct: 183 ESFIPTNDFERLKDTLRDGNGKPYKNGRNFASGSVRSLDPKNCIGRCVRFLPFNVLEGME 242 Query: 249 IFAKGQYEMLQKMRCLG-----FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 + P + + + E+ S + L IDG+V Sbjct: 243 DVPFPDSRACKLEGLTHLGFGYCPFFSISGTGLSKEYAEKFIQELVSTAANLHLPIDGIV 302 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 D S K G+ + +++KF + T L +I+ R G + PV + V I Sbjct: 303 MIFDSLSYSKSCGKTGHHYKDGLAYKFEDDTYETFLREIEWTPTRFGEIAPVGIFDTVEI 362 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G ++ A+LHN +IK L+ + G R+LV + +IP + D + R+ Sbjct: 363 DGCDVSRASLHNLTFIKNLE-----------LVPGCRILVSKRNMIIPHIEDNLDRGRYT 411 Query: 424 DAQPFSFPSFCPICQSRVV-RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 D P CP C S+ G+ V C C +Q R HF S+ A N Sbjct: 412 D----ITPPVCPCCGSKTRTYSRKTSDGRTVETLHCDNPQ-CDSQITRRFVHFASKKAMN 466 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEGL + L+ F + DI+ L+ ++ I + G+G+ S L++SI Sbjct: 467 IEGLSEATLEKFLN----LGYLHSFQDIYHLEEHRE----DIVALDGYGEKSFDRLWESI 518 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRV 601 N R S R++ S+ I +G +R L + + F Q ++ Sbjct: 519 NASRRTSFVRYLVSMDIPMIGRTKSRILDTVFSGNLTAFEQAAVGDY--------DFTQL 570 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQ 659 G+I+ I ++ + N+ + L E + + E ++ +V TG L+ Sbjct: 571 EDFGEILNHNIHSWFADEANLDLWKNLQNEFTFEQRKEETIMTKENKFTGCTIVATGKLE 630 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694 R + + +LGA + +++KTD +I G+ P Sbjct: 631 HFTRDGINDKILELGAKPGSSVTKKTDYLICGEKP 665 >gi|302337851|ref|YP_003803057.1| DNA ligase, NAD-dependent [Spirochaeta smaragdinae DSM 11293] gi|301635036|gb|ADK80463.1| DNA ligase, NAD-dependent [Spirochaeta smaragdinae DSM 11293] Length = 703 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 200/751 (26%), Positives = 332/751 (44%), Gaps = 96/751 (12%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 E+A +E+ L + ++ YY KP + D+EYD L R + +P+L R + Sbjct: 9 KEKATEEVRRLADLLFRYNRAYYIEGKPEVSDTEYDRLFLRLQELEEQWPELKRE---DS 65 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G +++ +V H +P LSL+K +++E+L ++ R ++ + + F +E K Sbjct: 66 PTLRVGSDLSSDFPEVEHRVPVLSLDKAYSVEELLGWMGRT----SGREASGLSFVVEEK 121 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I + Y G A RG+G+ G DV+ +R I ++P L+ + I VRGE+Y+ Sbjct: 122 IDGVSIVLYYRGGILERAVTRGNGYVGNDVTDNVRTIGSVPLRLTEAV--DIAVRGEIYL 179 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 K F + Y NPRN A+G LRR+ ++ G K Sbjct: 180 PKASFE----SLNRKMGNLYVNPRNLAAGTLRRVKSREVAEVPLTIFVYEGF-FSDGPKS 234 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL------------------ 295 E+L+ ++ LGF N V + + +S Sbjct: 235 HLEILEYLQSLGFRTNRRVGIFTNRTDLADFSRRHPDWQSGTWDELEGYVRTSTEERGSL 294 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 Y+IDGLV K++E ++ +LG PRW I++KF ++ + IDIQ+GRTG +TPV Sbjct: 295 DYEIDGLVVKINELDVRDRLGYTGHHPRWAIAYKFESPTGTSIIKSIDIQVGRTGRITPV 354 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 AR+EPV +GG+ I+N TLHN+DY+ L+ I VGD+V + R G+VIP V + Sbjct: 355 ARVEPVFVGGSTISNVTLHNQDYVDMLE-----------IAVGDQVSISRRGDVIPAVEE 403 Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475 ++ + ++ P CP C S + K A C L+C Q RL F Sbjct: 404 VVAKNESGN-PVWNMPLLCPSCGSSLQ--------KKGAHTFCLN-LSCPDQVRGRLFFF 453 Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 ++ +I+GLG + +D + + PAD++ + GFG+ + Sbjct: 454 IAAGQMDIDGLGPETVDLMIRE----GFVSEPADLYRFDYERLLPY------PGFGEKKI 503 Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDD 594 + + K + S+GI +G ++ L + S + ++ + Sbjct: 504 EAIRRGLEKSLTRPFHTVLASVGIPEMGKKVIELLISAGFRSMKAIYALVDQ------KN 557 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKK 651 +LI V +G+ I E + L + + +++SE + Sbjct: 558 RDALIAVKGIGEKTVDTIFEELGREAVRKRINELAEVGLAMEEEEKLSIASEQLIFAGQS 617 Query: 652 LVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSR-----------KTDIIIVGDNPGSKLE 699 TG+ Q R KA E +SR KT ++ G+ GSKL Sbjct: 618 WCVTGSFQHFNPRGKAMEL-----------VSRFGGSVVSSVSGKTSHLLAGEGGGSKLT 666 Query: 700 KAQQLGVKIMNEEQFLFLLQQYNTTLRIHDD 730 KA+ LGV++++EE+FL LL + D Sbjct: 667 KARSLGVEVLSEEEFLDLLASAGIEIPSADA 697 >gi|237739847|ref|ZP_04570328.1| NAD-dependent DNA ligase [Fusobacterium sp. 2_1_31] gi|229423455|gb|EEO38502.1| NAD-dependent DNA ligase [Fusobacterium sp. 2_1_31] Length = 594 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 202/634 (31%), Positives = 327/634 (51%), Gaps = 46/634 (7%) Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL +NI ++ FI RI + K+ + + LE K+DG I++ Y +GK V A R Sbjct: 1 MLSLANSYNIGEVVDFIERIKKRISKE--QELKYCLEVKLDGLSISLTYIQGKLVRAVTR 58 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG GEDV+ I I ++ V +L IE+RGE+ + F LN E + G + +A Sbjct: 59 GDGFIGEDVTENILQIASV--VKTLPQALDIEIRGEIVLPLASFEKLNKERLEKGEELFA 116 Query: 215 NPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273 NPRNAASG LR+L+P + L+ + + L + ++ K E ++ + +G Sbjct: 117 NPRNAASGTLRQLDPKIVKERALDAYFYFLVEADKLGLKSHSESMKFLESMGIKTTGIFE 176 Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333 I + + R LPY+ DGLV KVDE +L ++G +++PRW I++KF Sbjct: 177 LLENSKDIEQRIDYWEKERENLPYETDGLVIKVDEINLWDEIGYTSKTPRWAIAYKFPAH 236 Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393 Q ST L D+ Q+GRTG LTPVA LE V + G+ + A+LHN I+ + Sbjct: 237 QVSTVLNDVTWQVGRTGKLTPVAELEEVELSGSKVKRASLHNISEIQR-----------K 285 Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453 DIR+GDRV +++A E+IP+VV I ER + + P CP+C ++ R+ K Sbjct: 286 DIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKTIEEPINCPVCNHKLEREEGLVDIK-- 343 Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513 C A+ +++FVSRDA NI GLG + ++ F I+ DI+ L Sbjct: 344 -----CVNEECPAKIQGEIEYFVSRDALNIMGLGSKIVEKFID----LGYIKTVVDIYDL 394 Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 + ++ +ENI G S+ NL +SI + +N ++ I++LGI +G ++ LAK Sbjct: 395 KNHRE----DLENIDKMGKRSIENLLNSIEESKNREYDKVIYALGIPFIGKVASKVLAKA 450 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + + + L + +G+I A I+ F++ + V AL ++ Sbjct: 451 SKNIDKLM----------SMTFEELTSIEGIGEIAANEIIAFFKKEKTQKLVAALKEKGL 500 Query: 634 PSI----GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 +N++ K +FTGTL+ R + +E + +LG + +S+ D +I Sbjct: 501 KFEITESETKVENLNPNFAGKNFLFTGTLKHFTREQIKEEIEKLGGKNLSSVSKNLDYLI 560 Query: 690 VGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722 VG+ GSKL+KAQ++ +KI+ EE+F+ L +++ Sbjct: 561 VGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 594 >gi|288870885|ref|ZP_06115627.2| DNA ligase, NAD-dependent [Clostridium hathewayi DSM 13479] gi|288865557|gb|EFC97855.1| DNA ligase, NAD-dependent [Clostridium hathewayi DSM 13479] Length = 645 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 170/690 (24%), Positives = 293/690 (42%), Gaps = 63/690 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YYQ S+ I+ + EYD L + P +G E+ L K H P Sbjct: 15 YYQESREIMSNYEYDKLYDELAELEKE----TGVVLSKSPTQSVGYEVLSELPKERHESP 70 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL+K + DL++++ L K+DG + + Y G A R Sbjct: 71 MLSLDKTKSTADLQEWL------------GDQTGILSWKLDGLTVVLTYSGGTLKKAVTR 118 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 G+G GE +++ R +P ++++ + +RGE I ++F +N+ + V Y Sbjct: 119 GNGEIGEVITSNARVFANVP--VTISFQGELVLRGEAVIRYSEFNRINEAIDDV-DARYK 175 Query: 215 NPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273 NPRN SG +R+LN R +NF L + + + R Sbjct: 176 NPRNLCSGSVRQLNSQITAERNVNFEAFALVTAEGVDFNNSRKEQFEWLKRQGFDVVEYR 235 Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333 + S DGLV +D+ + + LG A+ PR I+ K+A++ Sbjct: 236 TVTADT-LPEAVEAFAEAVSGYDIPSDGLVLLLDDIAYGESLGRTAKFPRNAIAFKWADE 294 Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393 T+L I+ RTG++ PVA +PV + G ++ A++HN ++ L Sbjct: 295 IRETKLQYIEWSPSRTGLINPVAVFDPVELEGTTVSRASVHNLSIMESLA---------- 344 Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453 + GD + V +A +IP++ D + + P CP+C R Sbjct: 345 -LGEGDAITVYKANMIIPQIADNLTR-----SGKIQIPEKCPVCGGRT-----EVRQAGD 393 Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513 C A++++ FVSRDA NI+GL + L+ F A I+ ADIF L Sbjct: 394 VRSLYCTNPDCQAKRIKSFSLFVSRDALNIDGLSEATLEKFI----GAGFIKEFADIFHL 449 Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 R ++ I + GFG S NL + + +L R ++ LGI +G A+ L + Sbjct: 450 DRYEE----TITQMEGFGQKSYDNLIRATEAASHTTLARMVYGLGISGIGLANAKMLCRK 505 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + + + L+ V +G ++A A + ++ + +N V+ LL E++ Sbjct: 506 FK---------FDFDRMRHATAEELVEVDGIGAVLADAWIRYFADEKNQETVDHLLSELT 556 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + E V TG+++ R++ +E + G + ++ KT +I D Sbjct: 557 FEQEEESAEEAVF-EGMTFVITGSVEHFANRNELKEAIEARGGKATGSVTSKTTYLINND 615 Query: 693 --NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + SK +KA+ LGV I++EE+F+ +L + Sbjct: 616 VTSNSSKNKKAKDLGVPIISEEEFIKMLGE 645 >gi|254523079|ref|ZP_05135134.1| DNA ligase, NAD-dependent [Stenotrophomonas sp. SKA14] gi|219720670|gb|EED39195.1| DNA ligase, NAD-dependent [Stenotrophomonas sp. SKA14] Length = 821 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 226/674 (33%), Positives = 350/674 (51%), Gaps = 91/674 (13%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + L ++I+ + Y++ P I D +YD + R +A+ P+LAR+ + P + Sbjct: 6 AERAEDLRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARA---DSPTQQ 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + +V H++P LSL ++ E++ F+ RI ++ S+ F+ EPK+DG Sbjct: 63 VGARPSGRFPEVRHAVPMLSLSNAFSDEEVADFVRRIDERLGRR---SLQFSAEPKMDGL 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196 I++RYE+G FV A RGDG +GEDV+A +R I IP+ L + P+++EVRGEVY+++ Sbjct: 120 AISLRYEEGHFVLGATRGDGSTGEDVTANLREIGDIPKRLHGKDWPDVLEVRGEVYMARA 179 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS-EIFAKGQ 254 DF A N+ G K ANPRNAA+G LR+L+P R L+FF +G G+ Sbjct: 180 DFEAYNERARQQGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFAYGTGEVQGGELPDTH 239 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 L ++ GFPV+ + G++ YY ++ R LP+DIDG+VYK+D+ + Q+ Sbjct: 240 SGTLAQLGAWGFPVSGLCKVVEGTDGLLGYYRDIGERRDGLPFDIDGVVYKLDDRAGQQA 299 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 +G +R+PRW I+HKF ++ ST + I+IQIGRTG TPVARL PV + G +++NATLH Sbjct: 300 MGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATLH 359 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I L D+RVGD V+V+RAG+VIP+VV +I++ R P P+ P+ C Sbjct: 360 NADQIARL-----------DVRVGDSVIVRRAGDVIPEVVSVILDRRPPGTTPWQMPTRC 408 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S +VR+ AA RC+G L+C AQ+ E + HF SR A +I+GLG + ++ Sbjct: 409 PVCGSEIVREEG------AAAWRCSGELSCPAQRKEAIAHFASRRAMDIDGLGDKYIETL 462 Query: 495 FKSEDPAFSIRIPADIFTLQRRQ------------------------------------- 517 A ++ AD++ L R Q Sbjct: 463 VD----AGIVKSVADLYRLNRDQLLHLKLVLDAEDPSALAAALKLHLPAEGSGAVLNAVL 518 Query: 518 --------------QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563 + N NL +I+ R +LER +F+LGI HVG Sbjct: 519 KLDGNDPGWRTQALVQPASFEWNTKKIATKWADNLIAAIDASRAATLERLLFALGIEHVG 578 Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623 A++LA+++ + W RVP +G +A+++ F++ N Sbjct: 579 ESTAKALAQWFGDLELIRHLP----------WPLFKRVPDIGGEVARSLGHFFEQQGNQQ 628 Query: 624 AVEALLKEVSPSIG 637 A++ LLK I Sbjct: 629 AIDDLLKVGQVRIS 642 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 4/148 (2%) Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV---EALLKEVSP 634 + + A + + + + D A+ + E+ + + E ++ + Sbjct: 675 EKLVAALPGAQAVLDAEHGQFVN-AGLPDDTARGLAEWLDAEGHGAMLLAAEKAMQLILA 733 Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694 + V+ ++ + +V TGTL ++ R A+E + LGA VS +S+KT ++ G Sbjct: 734 KAPALAEIVAGPLDGQTVVLTGTLAQLTRDAAKERLEALGAKVSGSVSKKTSFVVAGAEA 793 Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 GSKL+KAQ LGV + +E++ L L ++ Sbjct: 794 GSKLDKAQSLGVPVWDEDRLLAYLAEHE 821 >gi|71894578|ref|YP_278686.1| DNA ligase [Mycoplasma synoviae 53] gi|123734274|sp|Q4A5J6|DNLJ_MYCS5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|71851366|gb|AAZ43975.1| DNA ligase [Mycoplasma synoviae 53] Length = 697 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 187/743 (25%), Positives = 329/743 (44%), Gaps = 77/743 (10%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S +Q ++++ SL + + + YY P + D YD+L + +P L Sbjct: 1 MSNQQIKEKIISLNNYLKHLNHLYYDLDAPEVDDKTYDSLYNELLELEAKYPSLVL---E 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + IG ++ K H+ LSL+K + ++ F F Q K+ + F+LE Sbjct: 58 DSVTKIIGAFVSNKFKKTKHNKEMLSLDKAYKESEIFSFYE---NFTQYKNLENFGFSLE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG I+I Y+ GKF+ A RGDG +GEDVS + I +P ++ + +EVRGE+ Sbjct: 115 PKIDGLSISIHYDNGKFIKAITRGDGTTGEDVSENVFQIRDVP--KQISYLKPLEVRGEI 172 Query: 192 YISKNDFL----------------------------ALNDEMIAVGRKPYANPRNAASGI 223 Y+ K+ + + + N RNAA+G Sbjct: 173 YMKKSTWKSLNEDIKNQYFQTNIEKIFSYMQALPKSKSWSNLKIKTPIFFKNARNAAAGT 232 Query: 224 LRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282 LR+ +P +R L+ + + E K Q E+L ++ F VN + A I+ Sbjct: 233 LRQKDPKIVKSRNLSSLFYEIVSPLEHNLKTQMEVLAFLKEQNFEVNEFQKLAKNDQEIM 292 Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342 NE I++ +D DG V K + +Q+G ++ P+W I++K+ ++A+T++L+I Sbjct: 293 FEINEFSKIKNNFEFDCDGFVIKFNLIDKWEQIGFTSKFPKWAIAYKYMLEEANTKILNI 352 Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402 Q+GRTG +T +A+ PV + + NATLHN ++IK +I +GD + Sbjct: 353 VAQVGRTGNITYIAQFMPVELNNTTVQNATLHNYEFIKK-----------NNINIGDEIT 401 Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462 + ++GE+IPKV+ I F CP C S + + Sbjct: 402 IIKSGEIIPKVISIYKKNTDS---VFEKVLNCPSCNSLLEIPEGY-------VDQFCRNE 451 Query: 463 ACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR-QQTST 521 C ++++ L FVS++ NI L Q + F+ P +R DIF L+ + Sbjct: 452 NCDEKKIQMLTFFVSKNCLNITNLSVQNIRIFYNH--PVIQMREIQDIFLLKNHVDEIKK 509 Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 K + + N+ SI K ++ L + +LGI+ +G A L + Sbjct: 510 IKFFAGKSQENKKINNILQSIEKAKDAYLRNVLAALGIKGIGNIAANLLTNKITKLSDLN 569 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 + L+ + G+ + + EF + +N ++ L + ++ Sbjct: 570 NLTD----------EDLLSIDTFGEKSIENLKEFLSSEKNQDLIKFLDENLN----YLNS 615 Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEK 700 SS++ N TG+L I R + ++ + G + S +S+ T +I S K++K Sbjct: 616 KKSSKLNNLNFAITGSLS-ISRDEFKKIILDNGGIFSNSVSKNTSYLISNSKENSTKIKK 674 Query: 701 AQQLGVKIMNEEQFLFLLQQYNT 723 A + +K++ EE+F LL++ N Sbjct: 675 ALENNIKVITEEEFHNLLKEENA 697 >gi|321309600|ref|YP_004191929.1| DNA ligase [Mycoplasma haemofelis str. Langford 1] gi|319801444|emb|CBY92090.1| DNA ligase [Mycoplasma haemofelis str. Langford 1] Length = 662 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 182/705 (25%), Positives = 323/705 (45%), Gaps = 53/705 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++ + +L +E+ ++ YY P D YD R + H +P+ + P N Sbjct: 3 IKEIIENLRKELKDLEEAYYAGD-PKESDEVYDFKLRTLLNLEHKYPEYK---TEDSPSN 58 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G +N KV H P LSL +N E+L+ F + + + + + LEPK+DG Sbjct: 59 RVGFYLNPENIKVHHDFPMLSLNNAFNNEELQSFFNQCEK-----ERGELEYFLEPKVDG 113 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I++ Y KG A RGDG GED+++ I I +IP + + I +RGE+YI K+ Sbjct: 114 ASISLIYRKGYLHQAISRGDGEIGEDLTSKILQINSIPIK--IESEDDITIRGEIYIRKS 171 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQY 255 +F K +AN RN +G LR +I++ L + + + E+ Q Sbjct: 172 NFE--AQRYDESSSKSFANHRNFVAGTLRLKKSEEISKKGLRVKAYSIVRAEEVGIDKQS 229 Query: 256 EMLQKMRCLGFPVNNGVR--QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++++++R LG ++ + I S+ + I+ T DGLV KV+E S + Sbjct: 230 QIIERIRELGLESHDPKETLISGNKEEIYSFIKAFEDIKKTSDIPYDGLVIKVNETSKWE 289 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +G ++ P+W I++K+ ++LL I +GRTG +T A++EPV + G+ + ATL Sbjct: 290 DIGYTSKFPKWAIAYKYPSLVKESKLLKIIPTVGRTGKITYSAQVEPVELDGSTVQFATL 349 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN +YI L D+RVGD V + ++GE++P+++ R D + + + Sbjct: 350 HNANYITEL-----------DLRVGDYVSIYKSGEIVPRIIGFSRERRSEDLERWIPSTH 398 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S ++ N T + C ++ + +F +R NIEGL + Sbjct: 399 CPSCNSELITKQNLST-------QYCPNKDCLEKKYAQFTYFSARGMANIEGLSIHIIMK 451 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ DI+ + + + T + + L SI+K RN + Sbjct: 452 LHS----LGILQNLDDIYKIHQHRDTILNADL---RIKEKLLNKLIASIDKSRNRESHKI 504 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + LGI +G E+A + ++ S L+ + +G+ A++I+ Sbjct: 505 LCGLGIEFIGEEVANLIFGHFGSIDEVLSASK----------EELMSIDGIGEKCAESII 554 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 ++ NI V+ L ++ + ++S + K++V TG KI R + + Sbjct: 555 QWSSQQENIDLVKRLKEQGLFKNHSTFEVINSFVRGKRVVITGKF-KISREELSSRLRNN 613 Query: 674 -GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 G + +S K D +I G+ GSKL KA+ L ++I+ E L Sbjct: 614 YGVKIVGNISSKVDYLIAGEGAGSKLIKAKDLNIQILTESDITQL 658 >gi|34499358|ref|NP_903573.1| DNA ligase [Chromobacterium violaceum ATCC 12472] gi|81654398|sp|Q7NR81|DNLJ_CHRVO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|34105208|gb|AAQ61564.1| DNA ligase [Chromobacterium violaceum ATCC 12472] Length = 821 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 215/667 (32%), Positives = 340/667 (50%), Gaps = 80/667 (11%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + + L + ++ + YY P + D+EYD L R A+ A P+LA S Sbjct: 19 MTANEL--RAAELRELLNRYGHEYYVLDAPTVPDAEYDRLFRELQALEEAHPELAVS--- 73 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI----------EDLRKFITRIYRFWQKK 121 + P ++GG V H++P LSL ++ +L +F R+ + Sbjct: 74 DSPTRRVGGAPLDEFVSVVHAVPMLSLSNAFSDMQLTDPAERHSELIQFDERVRKGL--- 130 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-N 180 D + + EPK DG I++ YE G AA RGDG +GE V+ +R I IP L N Sbjct: 131 DAAEVEYATEPKFDGLAISLLYENGVLTRAATRGDGVAGEQVTENVRTIRAIPLKLDGAN 190 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFF 239 P ++EVRGEV + K DF LN + IA G K +ANPRNAA+G LR+L+ R L+FF Sbjct: 191 PPALLEVRGEVLMLKRDFERLNADQIARGDKTFANPRNAAAGSLRQLDSRITAQRRLSFF 250 Query: 240 VHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNG--VRQANTFHGIVSYYNEMKSIRSTLP 296 + + + + + ++ LGFPV + G+ YY + + R+ LP Sbjct: 251 AYSIAQVGGADWPATHAGEMAWLKTLGFPVVMDSLRPVVSGAAGLAGYYEAVLTARAGLP 310 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 ++IDG+VYKV+ Q+ LG +R+PRW I+HKF ++A T + I+ Q+GRTG +TPVA Sbjct: 311 FEIDGVVYKVNRRDQQEALGFVSRAPRWAIAHKFPAEEALTCVEAIEEQVGRTGAITPVA 370 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 RL+PV +GG +TNATLHNED ++ +D+RVGD V+V+RAG+VIP+VV + Sbjct: 371 RLKPVFVGGVTVTNATLHNEDEVRR-----------KDVRVGDTVVVRRAGDVIPEVVSV 419 Query: 417 IVNERH---------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461 ++ +R P + P+ CP+C S VVR+ A RC+GG Sbjct: 420 VLAQRPMQPAEGGDLFSAGEEPRYPAYRLPTACPVCGSHVVREEGE------AIARCSGG 473 Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521 L+C AQ+ + ++HF R +I+GLG++ +D + ++ AD++ L+ Sbjct: 474 LSCRAQRSQAIQHFAGRRMMDIDGLGERYIDKLVEY----GYVQGVADLYRLKLEDLLEM 529 Query: 522 TKIENIL-----------GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 + + NL ++I+ R L R +F+LGIRHVG A++L Sbjct: 530 KRRADEDEGVTPETVKAGKVASKWAENLIEAIDASRAPPLARLLFALGIRHVGESTAKTL 589 Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 A + + + + A +P +G ++A ++ +F+ N A++ALL Sbjct: 590 ADWLGTMALIRRCPAALFA----------ALPDIGGVVADSLADFFAEDNNEKALDALLA 639 Query: 631 EVSPSIG 637 EV P+ Sbjct: 640 EVKPADE 646 Score = 150 bits (379), Expect = 7e-34, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 3/116 (2%) Query: 607 IIAQAIVEFYQNPRNICAVEAL---LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 + A+ ++ P A+ +L E+ S+ + + +E K LV TGTL + R Sbjct: 704 EVVNALADWLDEPGRRAALASLAGLRDEILASLPAAAEAAALPLEGKTLVLTGTLPTLSR 763 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A+ + G VS +S+KT ++ G+ G KL KAQ+LGV I++E LL Sbjct: 764 DQAKALIEAAGGKVSGSVSKKTHYVVAGEEAGGKLAKAQELGVAILDEAGLQALLA 819 >gi|148377548|ref|YP_001256424.1| DNA ligase [Mycoplasma agalactiae PG2] gi|254781374|sp|A5IY71|DNLJ_MYCAP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148291594|emb|CAL58980.1| DNA ligase [Mycoplasma agalactiae PG2] Length = 654 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 206/709 (29%), Positives = 347/709 (48%), Gaps = 55/709 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E+A++ + SL ++I+ + YYQ +KP + D EYD + + PDL S Sbjct: 1 MQKEEAKELIKSLVEKINQWNYEYYQLNKPSVSDLEYDKALLELEKLEKEHPDLILS--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P +IG + K + P LSL K +N +D+ FI I + +I F +E Sbjct: 58 NSPTFRIGSFASEKFTKFVYQKPMLSLAKAYNYDDINSFINNISKIV---PTENINFNIE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG I +RY++GK V AA RGDG GEDV+ I I +IP +N +EVRGEV Sbjct: 115 PKIDGLSIALRYKQGKLVKAATRGDGSEGEDVTENIYQIKSIP--KLINYFNDLEVRGEV 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 +I+KNDF +N+ + A + + + R L+ F++ + + + Sbjct: 173 FITKNDFKKINESNNFANARNAA-----SGTLRQLDANIVAERNLSAFLYEIVEPEKHGI 227 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q+E L+ M+ L FP N + + ++ I++ L YD DGLV K+++ + Sbjct: 228 YYQHEALEFMKNLDFPTNPFSKV-VEIEELEESISDFAEIKNKLDYDADGLVIKLNDLQM 286 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +LG+ ++ P+ I+ K+ + AS+R+ DI +GRTG +T +A + PV + + A Sbjct: 287 WDKLGKTSKFPKHSIAFKYDVEVASSRITDILTSVGRTGKITYIANILPVLLNQTTVKAA 346 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN ++IK + +I + D V + +AGE+IPKV+ + + + D + Sbjct: 347 TLHNHNFIKDM-----------NININDEVNIIKAGEIIPKVISLKEEKNYVD--YYKKA 393 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C S++V + C + + + HF SR+ NI GLG + Sbjct: 394 TNCPSCGSQLVEFEG-------IVDQFCTNDECPDKNINNIYHFASRNCLNIVGLGLSTV 446 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F+ I+ DIF L + + ++ + + D+ V N+ +SI +N Sbjct: 447 KDFYPK-----FIKNIKDIFDLHKYRA----ELIKLPRYRDLKVDNILNSIESAKNKKFS 497 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + IF+LGI+H+G A+ +A Y ++ + + L L +G I ++ Sbjct: 498 KVIFALGIKHIGQRAAKLIADNYANFAELLDD---------HNLLKLQNTKNIGPKIIES 548 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 ++EF +P N + L + K +S+ + V TG L + R + + Sbjct: 549 LIEFISSPANQDLLAFLDAI--FNYEGKAKVISTILSGYTFVITGVLSE-PRSHFVKLIE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + VS+ +S KT ++ G + GSKLEKA + G K++NEEQF L++Q Sbjct: 606 EHSGNVSSAISSKTSYLLAGSDAGSKLEKAYKTGTKVINEEQFYDLIKQ 654 >gi|229825369|ref|ZP_04451438.1| hypothetical protein GCWU000182_00723 [Abiotrophia defectiva ATCC 49176] gi|229790373|gb|EEP26487.1| hypothetical protein GCWU000182_00723 [Abiotrophia defectiva ATCC 49176] Length = 664 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 196/725 (27%), Positives = 325/725 (44%), Gaps = 73/725 (10%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + I ++ + L + YY S I+ ++EYD L +A+ + Sbjct: 1 MDINSKKQRMKELIDVLDKAAKAYYAESTEIMSNAEYDKLYDELEALENE----TGIVLA 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 K+G E+ SL K H P LSL K ++ +L F+ L Sbjct: 57 GSLTKKVGYEVLSSLPKKAHKEPRLSLSKTKDVGELASFL------------GDKEGILM 104 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG I + YE G+ V A RG+G GE V+ R IP L + + VRGE Sbjct: 105 WKLDGLTIVLTYENGELVEALTRGNGEIGEVVTENARFFENIP--LVIPYKGSLMVRGEA 162 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 I +DF +N+E+ V Y NPRN SG +R+L+ R +NF V+ + Sbjct: 163 IIKYSDFNRINEEITDVAE-KYKNPRNLCSGSVRQLSTEVTAKRNVNFIVYEDLEG-GEK 220 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K + E L + LGF V + E ++ T DGLV + ++ + Sbjct: 221 FKTREEELNYLESLGFTVVDHPLVNRDNLE--KEVREYENRIKTSDLPSDGLVLQFNDIA 278 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LG ++ PR I+ K+ ++ A T L +I+ RTG++ PVA + V + G +T Sbjct: 279 YGNSLGRTSKFPRHSIAFKWKDETAETTLREIEWSASRTGLINPVAIFDAVELEGTTVTR 338 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A++HN ++ L + VGDR+ V +A +IP++++ + Sbjct: 339 ASVHNVSIMRSL-----------KLGVGDRIKVYKANMIIPQILENLTESNAE-----EV 382 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C + + C A++L+ L HFVSRDA NI GL + Sbjct: 383 PTVCPVCGGKT-----ELKDEEGVQTLYCTNPDCMAKRLKLLTHFVSRDAMNIAGLSEMT 437 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L+ F I +D+F L ++ KI + GFG+ S NL +S++K R + Sbjct: 438 LEKFVAEN----MIHELSDVFKLANHKE----KIVTMEGFGERSYNNLIESLDKARETTA 489 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R ++SLGI ++G A+ + +Y+ + + L ++ +G+++A+ Sbjct: 490 VRILYSLGIANIGLATAKLICRYFNN---------DFDKIIKAKEEELTQIDGIGEVMAK 540 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH-------EKNVSSEIENKKLVFTGTLQKIQ- 662 E++ NI +E LL EV + V++ I V TG ++K + Sbjct: 541 VFAEYFNKDENIKTLEHLLAEVHIEKSAENDQNTEGDDEVNNAIAGLTFVITGDVEKFKN 600 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGD---NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R + E++ G V+ ++ KT+ +I D N G K +KA++LGVKI++E +FL L+ Sbjct: 601 RRELSEFIESKGGKVTGSVTGKTNYLINNDVTSNSG-KNKKAKELGVKIISENEFLELVG 659 Query: 720 QYNTT 724 N Sbjct: 660 GNNAN 664 >gi|190575033|ref|YP_001972878.1| NAD-dependent DNA ligase LigA [Stenotrophomonas maltophilia K279a] gi|254781423|sp|B2FKJ1|DNLJ_STRMK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190012955|emb|CAQ46587.1| putative DNA ligase [Stenotrophomonas maltophilia K279a] Length = 821 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 225/680 (33%), Positives = 349/680 (51%), Gaps = 92/680 (13%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S A + L ++I+ + Y++ P I D +YD + R +A+ P+LAR+ Sbjct: 1 MSPSPA-ERAEDLRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARA--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G + +V H++P LSL ++ E++ F+ RI ++ S+ F+ E Sbjct: 57 DSPTQQVGARPSGRFPEVRHAVPMLSLSNAFSDEEVADFVRRIDERLGRR---SLRFSAE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190 PK+DG I++RYE G FV A RGDG +GEDV+A +R I IP+ L + P+++EVRGE Sbjct: 114 PKMDGLAISLRYEDGHFVLGATRGDGSTGEDVTANLREIGDIPKRLHGKDWPDVLEVRGE 173 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS-E 248 VY+++ DF A N+ G K ANPRNAA+G LR+L+P R L+FF +G G+ Sbjct: 174 VYMARADFEAYNERARLQGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFAYGTGEVQGG 233 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 L ++ GFPV+ + G++ YY + R LP+DIDG+VYK+D+ Sbjct: 234 ELPDTHSGTLAQLGAWGFPVSELCKVVEGTDGLLGYYRTIGERRDGLPFDIDGVVYKLDD 293 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q+ +G +R+PRW I+HKF ++ ST + I+IQIGRTG TPVARL PV + G ++ Sbjct: 294 RAGQQAMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIV 353 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I L D+RVGD V+V+RAG+VIP+VV +I++ R P+ Sbjct: 354 SNATLHNADQIARL-----------DVRVGDSVIVRRAGDVIPEVVSVILDRRPQGTTPW 402 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP+C S +VR+ AA RC+G L+C AQ+ E + HF SR A +I+GLG Sbjct: 403 QMPTRCPVCGSEIVREEG------AAAWRCSGELSCPAQRKEAIAHFASRRAMDIDGLGD 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRR-------------------------------- 516 + ++ A ++ AD++ L R Sbjct: 457 KYIETLVD----AGIVKSVADLYRLSRDTLLHLKLVLDAEEPSALAAALKLHLPAEGSGA 512 Query: 517 -------------------QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + N NL +I+ R +LER +F+L Sbjct: 513 VLNAVLKLDGNDPGWRAQALAQPASFEWNTKKIATKWADNLIAAIDASRAATLERVLFAL 572 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI HVG A++LA+++ + W RVP +G +A+++ F++ Sbjct: 573 GIEHVGESTAKALAQWFGDLELIRHLP----------WPLFKRVPDIGGEVARSLGHFFE 622 Query: 618 NPRNICAVEALLKEVSPSIG 637 N A++ LL+ I Sbjct: 623 QQGNQQAIDDLLQVGQVRIA 642 Score = 153 bits (386), Expect = 9e-35, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 4/148 (2%) Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV---EALLKEVSP 634 + + A + + + + D A+ + E+ + + E ++E+ Sbjct: 675 EKLVAALPGAQAVLDAEHGQFVN-AGLPDDTARGLAEWLDADGHGAMLLAAENAMREILA 733 Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694 + V+ ++ + +V TGTL ++ R A+E + LGA VS +S+KT ++ G Sbjct: 734 KAPALAEIVAGPLDGQTVVLTGTLAQLTRDAAKERLEALGAKVSGSVSKKTSFVVAGTEA 793 Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 GSKL+KAQ LGV + +E++ L L ++ Sbjct: 794 GSKLDKAQSLGVSVWDEDRLLAYLAEHE 821 >gi|194366356|ref|YP_002028966.1| NAD-dependent DNA ligase LigA [Stenotrophomonas maltophilia R551-3] gi|254781422|sp|B4SP88|DNLJ_STRM5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|194349160|gb|ACF52283.1| DNA ligase, NAD-dependent [Stenotrophomonas maltophilia R551-3] Length = 821 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 227/680 (33%), Positives = 354/680 (52%), Gaps = 92/680 (13%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S A + L ++I+ + Y++ P I D +YD + R +A+ P+LAR+ Sbjct: 1 MSPSPA-ERAEDLRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARA--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G + +V H++P LSL ++ E++ F+ RI ++ S+ F+ E Sbjct: 57 DSPTQQVGARPSGRFAEVRHAVPMLSLSNAFSDEEVADFVRRIDERLGRR---SLQFSAE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190 PK+DG I++RYE+G FV A RGDG +GEDV+A +R I IP+ L+ + P+++EVRGE Sbjct: 114 PKMDGLAISLRYEEGHFVLGATRGDGSTGEDVTANLREIGDIPKRLNGKDWPDVLEVRGE 173 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS-E 248 VY+++ DF A N+ G K ANPRNAA+G LR+L+P R L+FF +G G+ Sbjct: 174 VYMARADFEAYNERARLQGGKVLANPRNAAAGSLRQLDPKISAQRKLSFFAYGTGEVQGG 233 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 L ++ GFPV+ R + G++ YY ++ R LP+DIDG+VYK+D+ Sbjct: 234 ELPDTHSGTLAQLGSWGFPVSALCRVVDGTDGLLGYYRDIGERRDGLPFDIDGVVYKLDD 293 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q+ +G +R+PRW I+HKF ++ ST + I+IQIGRTG TPVARL PV + G ++ Sbjct: 294 RAGQQAMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIV 353 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I L D+RVGD V+V+RAG+VIP+VV +I++ R P+ Sbjct: 354 SNATLHNADQIARL-----------DVRVGDSVIVRRAGDVIPEVVSVILDRRPQGTTPW 402 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP+C S +VR+ AA RC+G L+C AQ+ E + HF SR A +I+GLG Sbjct: 403 QMPTQCPVCGSEIVREEG------AAAWRCSGELSCPAQRKEAIAHFASRRAMDIDGLGD 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQ------------------------------- 517 + ++ A ++ AD++ L R Q Sbjct: 457 KYIETLVD----AGIVKGVADLYRLSRDQLLHLKLVLDAEDPSALAAALKLHLPAEGSGA 512 Query: 518 --------------------QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + N NL +I+ R +LER +F+L Sbjct: 513 VLNAVLKLDGNDPGWRAQALVQPASFEWNTKKIATKWADNLIAAIDASRAATLERLLFAL 572 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI HVG A++LA+++ + W RVP +G +A+++ F++ Sbjct: 573 GIEHVGESTAKALAQWFGDLELIRHLP----------WPLFKRVPDIGGEVARSLGHFFE 622 Query: 618 NPRNICAVEALLKEVSPSIG 637 N A++ LL+ I Sbjct: 623 QQGNQQAIDDLLQVGQVRIS 642 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 73/148 (49%), Gaps = 4/148 (2%) Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV---EALLKEVSP 634 + + + A + + + + D A+ + E+ + + E ++++ Sbjct: 675 EKLVAALPSAQAVLDAEHGQFVN-AGLPDDTARGLAEWLDAEGHGAMLLAAEKAMRQILA 733 Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694 + V+ ++ + +V TGTL ++ R A+E + LGA VS +S+KT ++ G Sbjct: 734 KAPALAEIVAGPLDGQTVVLTGTLAQLTRDAAKERLEALGAKVSGSVSKKTSFVVAGTEA 793 Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 GSKL+KAQ LGV + +E++ L L ++ Sbjct: 794 GSKLDKAQSLGVPVWDEDRLLAYLAEHE 821 >gi|271965050|ref|YP_003339246.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021] gi|270508225|gb|ACZ86503.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021] Length = 696 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 192/717 (26%), Positives = 306/717 (42%), Gaps = 87/717 (12%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI-GGEMNLSLFKVTHSI 93 YY + D YD L R A PD P P K+ GG + V H++ Sbjct: 30 YYGDGTSTLDDDAYDRLVRGIQAYEAEHPDEVL---PTSPTGKVAGGAVVGD---VPHTV 83 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 P LSL+ ++ L + + R + +++EPK+DG I RY G+ V Sbjct: 84 PMLSLDNVFGAGQLADWAASLERRLGRPV---TEWSVEPKLDGLAIAARYRGGRLVQLVT 140 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG +GEDVS I I +P L+ + +E+RGEV ++ + F + A + Sbjct: 141 RGDGTAGEDVSHAIGTIVGLPARLAEPV--TVELRGEVMMTASQFEDACVKRQAHDGTTF 198 Query: 214 ANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS-------EIFAKGQYEMLQKMRCLGF 266 ANPR+AA+G LR + + F L ++ E++ + G Sbjct: 199 ANPRSAAAGTLRAQDRPYVCELTFFGYGALPYPDDTSEQAVQLRELPHSEVMTWVAGQGV 258 Query: 267 PVNNGV----RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322 A T I ++ + R+ LP+ IDG+V K D + Q Q G +R+P Sbjct: 259 QTPAVTDVGGIVATTLEQIQERVEQIAAKRTELPFGIDGIVIKCDLAADQAQAGFSSRAP 318 Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382 RW I++K + T+LL ++ GR+GI+ P A LEPV + G+++T ATLHN I Sbjct: 319 RWAIAYKLPATEKITKLLGVEWNTGRSGIIAPRAVLEPVELDGSIVTYATLHNVADITR- 377 Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442 R + +GD V+V +AG+VIP+V +V+ R D QP + P CP C + Sbjct: 378 ----------RGLMLGDSVVVYKAGDVIPRVEAPVVHLRTGDEQPIAIPQVCPTCGDAID 427 Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502 RC G AC + + + + RD +IEGL + ++ A Sbjct: 428 --------ASQERWRCVRGRAC--RVIASIGYAAGRDQLDIEGLAENRIQQLLD----AG 473 Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 I AD+F L R Q + G S NL +I + + L R +LG+R Sbjct: 474 LIVDFADLFYLTREQVLG------LERMGATSTDNLLAAIERAKAQPLSRVFCALGVRGT 527 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 G ++R +A+++ S D ++ V +G A +V Sbjct: 528 GRSMSRRIARHFGSMDAIRAA----------DAEAIEAVEGIGPKKAPGVVAELVELA-- 575 Query: 623 CAVEALLKEVSPSIGRHEK-----------------NVSSEIENKKLVFTGT----LQKI 661 ++ L+K + +V TG L+ + Sbjct: 576 DLIDKLVKAGVTMTEPGWTPPAEPGADAQADPEAGGTSGLPLAGMSVVVTGAMSGALEAL 635 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R++ E + + G S+ +S KT +++ G+ GSK KA+ LGV+I+ E+F L+ Sbjct: 636 TRNEMNELIERAGGKASSSVSAKTSLLVAGEKAGSKRAKAESLGVRIVGPEEFAGLV 692 >gi|187928361|ref|YP_001898848.1| DNA ligase [Ralstonia pickettii 12J] gi|254781397|sp|B2UB00|DNLJ_RALPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|187725251|gb|ACD26416.1| DNA ligase, NAD-dependent [Ralstonia pickettii 12J] Length = 817 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 227/679 (33%), Positives = 344/679 (50%), Gaps = 69/679 (10%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M K + S ++ + L E++ + YY +P + D EYD L R +A+ Sbjct: 1 MSKTEEPASGPPSKDRPEARAAWLRAELNRYAHEYYVLDQPSVPDVEYDRLYRELEALET 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI--EDLRKFITRIYRFW 118 P+L P+ P ++GG + V H IP LS+ + R F + R Sbjct: 61 EHPELK---TPDSPTLRVGGAVLPEFAAVRHVIPMLSIRTETDTTANGARAFDASVRREL 117 Query: 119 QKKD-DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP--- 174 D D + + E K DG I +RYE+G V AA RGDG +GEDV+ IR I IP Sbjct: 118 GLDDTDPPVEYAAELKFDGLAINLRYERGYLVQAATRGDGTTGEDVTQNIRTIRQIPLGL 177 Query: 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR 234 + ++P+++EVRGEVY+ ++DF LN G K + NPRN A+G +R+L+P Sbjct: 178 SPVDGHVPDVLEVRGEVYMRRDDFEKLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAE 237 Query: 235 YL-NFFVHGLGKT--SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 +FF +GLG+ + ML ++ GFPV+N G+V ++ +++ Sbjct: 238 RPLSFFAYGLGEVAGWKGMPGTHSSMLDVLQAFGFPVSNERAAVAGGEGLVRFHEAIRAK 297 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R +LP+DIDG+VYKV+ +LQ++LG R+R PRW ++HK+ ++A T + ID+Q+GRTG Sbjct: 298 RDSLPFDIDGVVYKVNSLALQRELGFRSREPRWAVAHKYPAQEALTTVESIDVQVGRTGA 357 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARL PV +GG +TNATLHNED ++ +D+RVGD V+V+RAG+VIP Sbjct: 358 ITPVARLVPVFVGGVTVTNATLHNEDEVRR-----------KDVRVGDTVIVRRAGDVIP 406 Query: 412 KVVDIIVNER---------------HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456 +VV ++++ R P PF P CP+C S VVR+ A Sbjct: 407 EVVSVVLDRRPLDDVPGSDLFNPQQQPKYPPFELPKTCPVCGSHVVREEGE------AVA 460 Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516 RC+GGL CSAQ+ E ++HF R +IEGLG++ +D + + AD++ L Sbjct: 461 RCSGGLFCSAQRKEAIRHFAGRRMMDIEGLGERYIDNLVE----LDYVHGIADLYKLTLE 516 Query: 517 QQTSTTKIENIL-----------GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 + + NL + I + L RF+F+LGIRHVG Sbjct: 517 DFLEMKRRADERDGVTPETVSAGKIATKWAENLLEGIQASKTPPLARFLFALGIRHVGES 576 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 A++LA + S + ++ VG +A+AI +F+ P+N A+ Sbjct: 577 TAKTLADWLGSLAMIRRAPAPLLLALP----------DVGATVAEAIADFFAEPKNQQAL 626 Query: 626 EALLKEVSPSIGRHEKNVS 644 +ALL+ G H N Sbjct: 627 DALLEAGVAPQGEHAPNAK 645 Score = 171 bits (434), Expect = 3e-40, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 15/166 (9%) Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LG+ + A A+ LA + A + +A D + +++E+ Sbjct: 659 LGVPKLTATRAKQLAVAAPTLAQLASVEPDQLAGLPAD-------------VTASLLEWL 705 Query: 617 QNPRNICAVEAL--LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + + + L L+ + E ++ K +V TGTL + R +A+ + G Sbjct: 706 ASHDHRAQLAKLDALRGELLAAMPAEAAEEGVLDGKTVVLTGTLPNLTRDEAKAMLEAAG 765 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A VS +S+KTD ++ G++ GSKL KA++L VK+++E L LL++ Sbjct: 766 AKVSGSVSKKTDYVVAGEDAGSKLAKAEELNVKVLDEAGMLALLKK 811 >gi|82548271|gb|ABB82962.1| NAD-dependent DNA ligase [uncultured organism HF70_19B12] Length = 707 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 192/732 (26%), Positives = 315/732 (43%), Gaps = 83/732 (11%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E L EI H + YY Y++P I D+++D L +R I + P L K+G Sbjct: 10 EADRLASEIQRHSELYYNYAEPEITDAQFDLLIQRLREIDPSNPQL----------EKVG 59 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + KV H P LSL+K +++ F+ + F ++PK+DG+ I Sbjct: 60 ADPAPGSVKVEHIYPMLSLDKANTPQEIAHFVN-------ITSAATQRFVVQPKLDGSAI 112 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 ++ Y +G V A RG G GEDV+ +R IP IP + VRGEV + + + Sbjct: 113 SLEYRRGMLVRAVTRGSGTRGEDVTRNVRRIPNIPNR--IKWRGNCFVRGEVVMLLDTYR 170 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNP---TDITRYLNFFVHGLGKT---------- 246 E NPRN A+G LR+ NP L FF + + Sbjct: 171 ENYAE-------VAPNPRNLAAGALRQKNPESGKARAEDLRFFAYDVKFPEGASGEESKA 223 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVS----YYNEMKSIRSTLPYDIDGL 302 + + P V +A+ ++ E R +P++IDGL Sbjct: 224 PLNYIHDSQILEWLFTMDIQPAGRFVVEADDSDEVIELLISKTEEAIGSREEMPWEIDGL 283 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KVDE + + LGE A PRW ++ KF ++A+T ++ +D Q GRTG +TPVAR+ PV Sbjct: 284 VIKVDELTKRPLLGETAHHPRWALAWKFPPEEATTVVMSVDWQTGRTGNVTPVARVAPVM 343 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--- 419 + G + N TLHN ++ L +++GDRV++ R G+VIPK+ +I Sbjct: 344 VSGVTVENTTLHNPGEVERL-----------GLKIGDRVMIVRRGDVIPKITKVIGQATG 392 Query: 420 -----ERHPDAQPFSF--PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472 RH D PF P + V A +C C ++ + + Sbjct: 393 TDLEGRRHSDGTPFHEALPERIDVEPPSVCPRCGTNLHSEGAFLKC-RNSGCPSRVVRSI 451 Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGD 532 ++ + + AD++ L S + G+ Sbjct: 452 LYWCKSLEI------DGVGEKLANQLVESGLAPELADLYRLSHADVLS------LERMGE 499 Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592 S + D I +R +SL+ FI SLG+ +G EIA ++K + +NF +N + Sbjct: 500 KSARRVIDQIQSKRKMSLDHFIASLGLPRIGPEIASMISKEIKTIENFRNLVNTWSSGRE 559 Query: 593 DDWL---SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN 649 + L+ + +G+I+A+ ++ + N +E L + + + E + Sbjct: 560 ETTDILPRLVAIDGIGEIVARLFLDG--SKSNWSQIEDLSSLLEITPMQTENRSIGPLAG 617 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 L TG++ + R + + + G V + +S + D +I GD GSKLEKA +L V ++ Sbjct: 618 LTLCITGSMTR-PRKEVELLIRSAGGKVVSSVSSRLDYLIAGDAAGSKLEKATRLQVSVL 676 Query: 710 NEEQFLFLLQQY 721 NEEQ + + + Sbjct: 677 NEEQLMQKIGKN 688 >gi|28199807|ref|NP_780121.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa Temecula1] gi|182682559|ref|YP_001830719.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa M23] gi|81438262|sp|Q87A88|DNLJ_XYLFT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254782314|sp|B2I9S4|DNLJ_XYLF2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|28057928|gb|AAO29770.1| DNA ligase [Xylella fastidiosa Temecula1] gi|182632669|gb|ACB93445.1| DNA ligase, NAD-dependent [Xylella fastidiosa M23] gi|307578838|gb|ADN62807.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa subsp. fastidiosa GB514] Length = 831 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 229/690 (33%), Positives = 352/690 (51%), Gaps = 91/690 (13%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + + L + + + Y+ +P I D++YD + R DA+ +PDLA P Sbjct: 1 MIPLDPAQRAAELRRRLQEANYHYHVLDQPRIPDADYDRMLRELDALEATYPDLA---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G + + +V H++P LSL ++ ++ +F+ RI + F+ E Sbjct: 58 DSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRITARLGETAPG---FSAE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG I++RY+ G F+ A RGDG +GEDV+A +R +PTIP+ S P ++EVRGE Sbjct: 115 PKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTVLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249 VY+ + DF A N + G K ANPRN A+G LR+L+ R L+F+ +G+G+ ++ Sbjct: 175 VYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGIGEVTDD 234 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E+L +R GFPV+ V G+++YY M++IR TLP+DIDG+VYK+D+ Sbjct: 235 VAFHRHSEILASLRAWGFPVSPLVELVYGSEGLLNYYRRMETIRDTLPFDIDGIVYKLDD 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 S Q ++G AR+PRW I+HKF ++ +T + I+IQIGRTG TPVARL PV + G + Sbjct: 295 LSGQHEMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQVAGVTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 T+ TLHN D I L D+R+GD V+V+RAG+VIP+VV +I + R P A + Sbjct: 355 TSVTLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVAVITDSRPPGATAW 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 S P CP+C S +VR+ A RC+G LAC AQ+ E ++HFVSR A ++EGLG Sbjct: 404 SMPMACPVCGSEIVRETG------AAVWRCSGELACPAQRKEAIRHFVSRRAMDVEGLGV 457 Query: 489 QQLDFFFK--------------------------SEDPAFSIRIPADIFTLQRRQQ---- 518 + ++ ++ P +R D T R QQ Sbjct: 458 KCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRYQQLEEI 517 Query: 519 --------------TSTTKIENILGFGD-----------VSVTNLYDSINKRRNISLERF 553 +I+ + NL +I++ R +LERF Sbjct: 518 LRTVGVDLSGEGDVPKHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAIDRSRQTTLERF 577 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F+LG+ HVG A++LA + Q + VP +G +A+AI Sbjct: 578 LFALGMTHVGETTAKALAHSFGDLAIIRQLPWPLFKC----------VPDIGGEVARAIG 627 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 F P N A++ L++ H Sbjct: 628 HFMDQPANQQAIDDLVERGVRITDAHPPTS 657 Score = 148 bits (373), Expect = 3e-33, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 4/147 (2%) Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSI 636 A + D +L++ V AQ++ E++Q+P NI L + + Sbjct: 685 LATLAPTLPLLAEADLDALLQ-AGVPQPAAQSLTEWFQSPDNISLARRLQHCCDVLLAQL 743 Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696 ++ ++ + + +V TG L + R A + LGA + +S+KT ++ G++PGS Sbjct: 744 LSPDRAHTAPLNGQSVVLTGKLASLTREAAATRLESLGAKIVGSVSKKTSFLVAGEDPGS 803 Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYNT 723 KL+KA L V I +E + L L+QY+ Sbjct: 804 KLDKAHALHVDIWDEARLLAFLEQYSA 830 >gi|319943831|ref|ZP_08018112.1| DNA ligase [Lautropia mirabilis ATCC 51599] gi|319743064|gb|EFV95470.1| DNA ligase [Lautropia mirabilis ATCC 51599] Length = 779 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 225/638 (35%), Positives = 337/638 (52%), Gaps = 52/638 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 R + +L E+ H+ YY+ P + DS YD L + +P L P+ Sbjct: 20 PADIRARVQTLRAELLAHNRAYYEEDAPTVEDSVYDGLFLELQQLEARWPALL---TPDS 76 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + VTH +P SL ++ D+ F R+ +D F+ PK Sbjct: 77 PTQRVGSAPSAGFGTVTHRVPMRSLSNAFSEADVLAFDRRLKSLLGVTED--FAFSATPK 134 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG T+RYE G+ V A RGDG +GE+++A +R + +P LS PE++EVRGEV + Sbjct: 135 LDGLAATLRYEHGRLVQGATRGDGVTGENITANLRTVRGVPAQLSGPAPEVLEVRGEVLM 194 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIF-- 250 K DFLALN A G K +ANPRNAA+G LR+L+ +R L F+ +G+G+ S+ Sbjct: 195 LKEDFLALNRAQEARGDKLFANPRNAAAGSLRQLDARVTASRPLTFYAYGIGEVSDPDQV 254 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q+ ML + LGF G + ++ YY S+R+TLPY IDG+VY++D+ Sbjct: 255 PASQHGMLVWLGTLGFLPPPGAERVQGVSALLDYYRHTGSVRATLPYAIDGVVYQLDDRH 314 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+Q G AR+PR+ ++HK+A ++A T L DI +Q+GRTG+LTPVARLEPV +GG ++N Sbjct: 315 LQEQAGFVARAPRFALAHKYAAEEAVTTLQDIFVQVGRTGVLTPVARLEPVFVGGVNVSN 374 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED ++ + + +GDRV+V+RAG+VIP+VV +++++R DA+ F Sbjct: 375 ATLHNEDEVRR-----------KHLLIGDRVIVRRAGDVIPEVVGVVLDQRPADAREFRM 423 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C S V R + A RC GGL CSAQ+ L HF R A +I+GLG Sbjct: 424 PSQCPVCGSAVQRLPSE------ANWRCVGGLFCSAQRKRALWHFAHRRAMDIDGLGDVL 477 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + PAD++ L + + G+ S NL +I+ R+ SL Sbjct: 478 VEQLVD----GNLVHEPADLYRLDAATLQA------LPRMGEKSAANLLAAIDGSRHPSL 527 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR---------- 600 ERF+F+LGIR VG E AR LA+ + + F + + +L Sbjct: 528 ERFLFALGIRAVGEEAARVLARAFGDLEGFLAA--DWATLLEEKAATLKENERRRSRGER 585 Query: 601 -----VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + +G I ++ F N ++ L Sbjct: 586 PLPVPLDGIGPEIIGSVSAFLGEAHNRDSIAHLRAVGV 623 Score = 130 bits (326), Expect = 1e-27, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 41/74 (55%) Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 + +V TGTL+ + R +A+ + LG + +S +T ++ G+N GSKL KA+ L Sbjct: 704 QPFAGQSIVVTGTLEHLSRDQAEAMIRALGGKPAGSVSGRTAFVVAGENAGSKLTKARSL 763 Query: 705 GVKIMNEEQFLFLL 718 G+ ++ E F + Sbjct: 764 GISVLAEADFFNKI 777 >gi|27904570|ref|NP_777696.1| DNA ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|32129495|sp|Q89B02|DNLJ_BUCBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|27903967|gb|AAO26801.1| DNA ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 672 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 210/722 (29%), Positives = 350/722 (48%), Gaps = 69/722 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + + L+ EI YH Y+ + P I D +YD L + R + + Sbjct: 1 MKDIKNYILKLQDEIRYHAYLYHTLNSPKISDEKYDFLVIELQRLEKKCKYSVRFK--DS 58 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +G E K +H P LSL ++ D KF +I IFF E K Sbjct: 59 PTQSVGSENLPEFKKFSHITPMLSLNNVFIKNDFLKFYKKIVNNI---TVEKIFFCSELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192 DG I + Y G A RG+G+ GEDV++ + I ++P+ L +IPE +EVRGE++ Sbjct: 116 FDGVAINLIYINGLLFRAVTRGNGYEGEDVTSNVNMISSVPKKLIGIDIPETLEVRGEIF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251 + K+DF LN + +K ++N RNAASG LR N R L F+ +G G S Sbjct: 176 MLKSDFKKLNVRLTKFKKKLFSNSRNAASGSLRHKNAKVTELRSLTFYCYGCGYCSYENF 235 Query: 252 KG-QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + L+K++ GFP+++ +++ I+ +YN +++ R L ++IDG+V KVD Sbjct: 236 TDSHFLRLKKLKSWGFPISDYNFLHSSYDEILRFYNFIQNERYFLNFNIDGIVIKVDSIC 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQK L +++PRW +++KF++K T +++I Q+GRTG++TPVA++ P+ I G LI Sbjct: 296 LQKSLSTTSKAPRWAVAYKFSDKIKITTIMNILYQVGRTGVITPVAQVTPIYISGVLIKK 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 +LHN + I+ L ++ +GD V +KR+G+VIP ++++ + + S Sbjct: 356 VSLHNFNEIRRL-----------NLNIGDSVFIKRSGDVIPHIIEVASKCKLQRNEDISI 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P FCP C S++ RC GL C +Q + L +F S+ NI GLG + Sbjct: 405 PKFCPECGSKLK-----VDSFSNIKIRCMAGLKCLSQFKKLLHYFCSKKGLNILGLGPKI 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + +DIF L + + + + G + N+ SIN +N+S Sbjct: 460 IDKLVD----LGYVSDLSDIFDL------NVSLLTKVENIGIIKSQNIIRSINNSKNVSF 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +F+ SLGI VG+ +ARS++ Y+ + F + + +G IA Sbjct: 510 SKFLCSLGIFEVGSIVARSISNYFFTLDKFMNSSK----------EEFLLINGIGVNIAD 559 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 + F + N + L K+++ S + + ++ + KK+VF+G+ R K E Sbjct: 560 NLYNFINDEFNKNIIFKLSKKLNISSDINAIIDNNNTLFRKKIVFSGSFSNFSRSKIIEL 619 Query: 670 VTQLGAVVSAILSRKT------------DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 S+K D II+G PG KL KA++ + + E++FL + Sbjct: 620 ------------SKKLGIIVVSSVSKSVDYIIIGKKPGRKLIKAKKFSIPGIYEKEFLNI 667 Query: 718 LQ 719 + Sbjct: 668 IN 669 >gi|302387645|ref|YP_003823467.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1] gi|302198273|gb|ADL05844.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1] Length = 654 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 178/702 (25%), Positives = 297/702 (42%), Gaps = 63/702 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 + L ++ YYQ S+ I+ + EYD L + P +G Sbjct: 7 RMKELVNLLTAAGKAYYQESREIMSNFEYDRLYDELKELEDE----TGVILSKSPTQNVG 62 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 ++ L K H P LSL+K ++E L++++ S L K+DG + Sbjct: 63 YQVLSELPKEAHETPMLSLDKTKSVESLQEWL------------GSQTGVLSWKLDGLTV 110 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 + Y +G A RG+G GE ++ + IP L+++ + +RGE I +DF Sbjct: 111 VLSYNRGTLQKAVTRGNGEIGEVITNNAKVFSNIP--LNISHMGELILRGEAVIKYSDFN 168 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRR-LNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N+E+ V Y NPRN SG +R+ N R +NF L + Sbjct: 169 RINEEIEEV-AAKYKNPRNLCSGSVRQLNNQITAQRNVNFKAFSLVTAEGAEFNNSRKEQ 227 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + S+ DGLV D+ + + LG Sbjct: 228 FEWLKRQGFDVVDYEMVTRDT-LPEAVETFSKNISSYDIPSDGLVLLFDDIAYGEALGRT 286 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++ PR I+ K+A++ TRL I+ RTG++ PVA +PV + G ++ A++HN Sbjct: 287 SKFPRNAIAFKWADEIRETRLDHIEWSASRTGLINPVAIFDPVELEGTTVSRASVHNLSI 346 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 ++ L+ + GD + V +A +IP++ + ++ P CP+C Sbjct: 347 MEALE-----------LGEGDEITVYKANMIIPQIAGNLTR-----SKKIRIPDQCPVCG 390 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 C A++L+ FVSRDA NI+GL + L+ F Sbjct: 391 GST-----EIRRVNDVKSLYCTNPDCQAKRLKGFSLFVSRDALNIDGLSEATLEKFI--- 442 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A IR ADIF L++ ++ I + GFG S NL ++ K + +L R I+ LG Sbjct: 443 -GAGYIREFADIFHLEQHEE----AITQMEGFGRKSYDNLIQAVKKASHTTLPRLIYGLG 497 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I +G A+ L + + S + + L VP +G ++A A + +++ Sbjct: 498 IAGIGLANAKMLCQEFKS---------DFGKMRKAEEEELTAVPGIGKVLADAWITYFKE 548 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVV 677 +N V+ LL EV+ G E E V TG++ R QE + G Sbjct: 549 EKNNRMVDRLLSEVTIQ-GDGEVRSGGIFEGMVFVMTGSVNHYENRKALQEDIEAHGGKA 607 Query: 678 SAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFL 717 + ++ +T +I D + SK +KA++LGV I++EE F+ L Sbjct: 608 AGSVTSRTTYLINNDTTSNSSKNKKAKELGVPIISEEDFIKL 649 >gi|71275191|ref|ZP_00651478.1| NAD-dependent DNA ligase [Xylella fastidiosa Dixon] gi|170731182|ref|YP_001776615.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa M12] gi|71164000|gb|EAO13715.1| NAD-dependent DNA ligase [Xylella fastidiosa Dixon] gi|167965975|gb|ACA12985.1| DNA ligase (NAD(+)) [Xylella fastidiosa M12] Length = 837 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 229/696 (32%), Positives = 353/696 (50%), Gaps = 91/696 (13%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 + + + + L + + + Y+ +P I D++YD + R DA+ +PDL Sbjct: 1 MTDPALMIPLDPAQRAAELRRRLQEANYHYHVLDQPRIPDADYDRMLRELDALEATYPDL 60 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 A P+ P ++G + + +V H++P LSL ++ ++ +F+ RI + Sbjct: 61 A---TPDSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRITARLGETAP-- 115 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEI 184 F+ EPK+DG I++RY+ G F+ A RGDG +GEDV+A +R +PTIP+ S P + Sbjct: 116 -SFSAEPKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTV 174 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGL 243 +EVRGEVY+ + DF A N + G K ANPRN A+G LR+L+ R L+F+ +G+ Sbjct: 175 LEVRGEVYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGI 234 Query: 244 GKT-SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G+ ++ E+L +R GFPV+ V G+++YY M++IR TLP+DIDG+ Sbjct: 235 GEVADDVSFHSHSEILASLRAWGFPVSPLVELVYGSEGLLNYYRRMETIRDTLPFDIDGI 294 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 VYK+D+ S Q ++G AR+PRW I+HKF ++ +T + I+IQIGRTG TPVARL PV Sbjct: 295 VYKLDDLSGQHEMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQ 354 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G +T+ATLHN D I L D+R+GD V+V+RAG+VIP+VV +I + R Sbjct: 355 VAGVTVTSATLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVAVITDSRP 403 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P +S P CP+C S +VR+ A RC+G LAC AQ+ E ++HFVSR A + Sbjct: 404 PGVTAWSMPMACPVCGSEIVRETG------AAVWRCSGELACPAQRKEAIRHFVSRRAMD 457 Query: 483 IEGLGKQQLDFFFK--------------------------SEDPAFSIRIPADIFTLQRR 516 +EGLG + ++ ++ P +R D T R Sbjct: 458 VEGLGVKCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRY 517 Query: 517 QQ------------------TSTTKIENILGFGD-----------VSVTNLYDSINKRRN 547 QQ +I+ + NL +I++ R Sbjct: 518 QQLEEILRTVGVDLSGEGDVPEHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAIDRSRQ 577 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +LERF+F+LG+ HVG A++LA + Q + VP +G Sbjct: 578 TTLERFLFALGMTHVGETTAKALAHSFGDLAIIRQLPWPLFKC----------VPDIGGE 627 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 +A+AI F P N A++ L++ H Sbjct: 628 VARAIGHFMDQPANQQAIDDLVERGVRITDAHPPTS 663 Score = 147 bits (370), Expect = 8e-33, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 4/147 (2%) Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSI 636 A + D +L++ V AQ++ E++Q+P NI L + + Sbjct: 691 LATLAPTLPLLAEADLDALLQ-AGVPQPAAQSLTEWFQSPDNISLARRLQHCCDVLLAQL 749 Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696 ++ ++ + + +V TG L + R A + LGA + +S+KT ++ G++PGS Sbjct: 750 PSPDRAHTAPLNGQSVVLTGKLASLTREAAATRLEMLGAKIVGSVSKKTSFLVAGEDPGS 809 Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYNT 723 KL+KA L V I +E + L L+QY+ Sbjct: 810 KLDKAHALHVDIWDEARLLDFLEQYSA 836 >gi|241662937|ref|YP_002981297.1| DNA ligase [Ralstonia pickettii 12D] gi|240864964|gb|ACS62625.1| DNA ligase, NAD-dependent [Ralstonia pickettii 12D] Length = 813 Score = 386 bits (990), Expect = e-104, Method: Composition-based stats. Identities = 225/662 (33%), Positives = 340/662 (51%), Gaps = 69/662 (10%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + L E++ + YY +P + D+EYD L R +A+ P+L P+ P + Sbjct: 14 EARAAWLRAELNRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEHPELK---TPDSPTLR 70 Query: 78 IGGEMNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQKKD-DNSIFFTLEPKI 134 +GG + V H IP LS+ E R F + R D D + + E K Sbjct: 71 VGGAVLPEFAAVRHVIPMLSIRTETDTTPNGARAFDASVRRELGLDDTDPPVEYAAELKF 130 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEV 191 DG I++RYE+G V AA RGDG +GEDV+ IR I IP + ++P+++EVRGEV Sbjct: 131 DGLAISLRYERGYLVQAATRGDGTTGEDVTQNIRTIRQIPLGLSPVDGHVPDVLEVRGEV 190 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKT--SE 248 Y+ ++DF LN G K + NPRN A+G +R+L+P +FF +GLG+ + Sbjct: 191 YMRRDDFEKLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEVAGWK 250 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 ML ++ GFPV+N G+V ++ +++ R +LP+DIDG+VYKV+ Sbjct: 251 GMPGTHSSMLDVLQAFGFPVSNERAAVAGGEGLVRFHEAIRAKRDSLPFDIDGVVYKVNS 310 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ++LG R+R PRW ++HK+ ++A T + ID+Q+GRTG +TPVARL PV +GG + Sbjct: 311 LALQRELGFRSREPRWAVAHKYPAQEALTTVESIDVQVGRTGAITPVARLVPVFVGGVTV 370 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD---- 424 TNATLHNED ++ +D+RVGD V+V+RAG+VIP+VV ++++ R D Sbjct: 371 TNATLHNEDEVRR-----------KDVRVGDTVIVRRAGDVIPEVVSVVLDRRPMDDVPG 419 Query: 425 -----------AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473 PF P CP+C S VVR+ A RC+GGL CSAQ+ E ++ Sbjct: 420 SDLFNPQQQPKYPPFELPKTCPVCGSHVVREEGE------AVARCSGGLFCSAQRKEAIR 473 Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL----- 528 HF R +IEGLG++ +D + + AD++ L + + Sbjct: 474 HFAGRRMMDIEGLGERYIDNLVE----LDYVHGIADLYKLTLEDFLEMKRRADERDGVTP 529 Query: 529 ------GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582 NL + I + L RF+F+LGIRHVG A++LA + S + Sbjct: 530 ETVSAGKIATKWAENLLEGIQASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAMIRR 589 Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642 ++ VG +A+AI +F+ P+N A++ALL+ G H N Sbjct: 590 APAPLLLALP----------DVGATVAEAIADFFAEPKNQQALDALLEAGVAPQGEHAPN 639 Query: 643 VS 644 Sbjct: 640 AK 641 Score = 173 bits (437), Expect = 1e-40, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 15/166 (9%) Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LG+ + A A+ LA + A + +A D + +++E+ Sbjct: 655 LGVPKLTATRAKQLAVAAPTLAQLASVEPDQLAGLPAD-------------VTASLLEWL 701 Query: 617 QNPRNICAVEAL--LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + + + L L+ + E + K +V TGTL + R +A+ + G Sbjct: 702 ASHDHRAQLAKLDALRGELLAAMPAEAAEEGVLAGKTVVLTGTLPNLTRDEAKAMLEAAG 761 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A VS +S+KTD ++ G++ GSKL KA++L VK+++E L LL++ Sbjct: 762 AKVSGSVSKKTDYVVAGEDAGSKLAKAEELNVKVLDEAGMLALLKK 807 >gi|295110374|emb|CBL24327.1| DNA ligase, NAD-dependent [Ruminococcus obeum A2-162] Length = 624 Score = 386 bits (990), Expect = e-104, Method: Composition-based stats. Identities = 172/684 (25%), Positives = 300/684 (43%), Gaps = 64/684 (9%) Query: 43 ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102 + + EYDAL + + + P ++G E +L K TH P LSL+K Sbjct: 1 MSNREYDALYNELEQTEK----ITGIVLADSPTVRVGYEAVDALPKETHDSPMLSLDKTK 56 Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162 E LR F+ K+DG I + YE G+ A RG+G GE Sbjct: 57 EKEVLRGFVGSHKTLL------------SWKMDGLTIVLTYENGELQKAVTRGNGIVGEV 104 Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222 ++ R IP L + + +RGE I+ +DF +N+ + V Y NPRN SG Sbjct: 105 ITNNARVFRNIP--LKIAYQGRLVLRGEAIITYSDFERINNSIEDVD-AKYKNPRNLCSG 161 Query: 223 ILRR-LNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI 281 +R+ N R + F L ++ E + R + + Sbjct: 162 SVRQLNNQITAERNVRFLAFALVSAQDVDMHNSREFQMEWLRTQGFEVVEYRVVTS-ENL 220 Query: 282 VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341 + +T + DGLV D+ + + LG A+ PR + K+A++ T L + Sbjct: 221 DEAMDYFAERITTNDFPSDGLVALYDDIAYGESLGSTAKFPRNAFAFKWADEVRETTLRE 280 Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401 I+ RTG++ PVA +PV + G ++ A++HN +K L + +GD + Sbjct: 281 IEWSPSRTGLINPVAVFDPVELEGTTVSRASVHNVSIVKEL-----------KLGIGDTI 329 Query: 402 LVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461 V +A +IP++ + + + P+ CP+C + Sbjct: 330 QVYKANMIIPQIAENLTQ-----SGKLEIPNTCPVCGQEARVIR-----ENDVEALYCMN 379 Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521 C A++++ FVSRDA NI+GL + L+ F I DIF +++ + Sbjct: 380 PDCVAKKIKAFTLFVSRDAMNIDGLSEATLEKFIAK----GFIHNFGDIFEIEKYRD--- 432 Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 +I + GFG+ S NL SI K + +L + I+SLGI ++G A+ + +Y+ Sbjct: 433 -EIVMMDGFGEKSFDNLISSIEKAKKTTLAKVIYSLGISNIGLSNAKVICRYFD------ 485 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 +++ + + + +G +IA ++ +++ N V+ LL + I + EK Sbjct: 486 ---DDLDKIRSAKEEEISAIDGIGPVIAGSLTKYFAKSENNQKVDHLLGYL--HIVKEEK 540 Query: 642 NVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKL 698 + + V TG+L+ R +A+ + LG V+ ++ KT+ +I D + SK Sbjct: 541 SDNQIFAGMNFVITGSLEHFSNRGEAKNLIESLGGKVTGSVTGKTNYLINNDVTSNSSKN 600 Query: 699 EKAQQLGVKIMNEEQFLFLLQQYN 722 +KA++LG+ I++EE FL L ++ Sbjct: 601 KKARELGIPILSEEDFLKLTEESK 624 >gi|9107768|gb|AAF85353.1|AE004063_2 DNA ligase [Xylella fastidiosa 9a5c] Length = 837 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 229/696 (32%), Positives = 353/696 (50%), Gaps = 91/696 (13%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 + + + + L + + Y+ +P I D++YD + R DA+ A+PDL Sbjct: 1 MTDPALMIPLDPAQRAAELRCRLQEANYHYHVLDQPRIPDADYDRMLRELDALEAAYPDL 60 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 A P+ P ++G + + +V H++P LSL ++ ++ +F+ RI + Sbjct: 61 A---TPDSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRITACLGETAPG- 116 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEI 184 F+ EPK+DG I++RY+ G F+ A RGDG +GEDV+A +R +PTIP+ S P + Sbjct: 117 --FSAEPKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTV 174 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGL 243 +EVRGEVY+ + DF A N + G K ANPRN A+G LR+L+ R L+F+ +G+ Sbjct: 175 LEVRGEVYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGI 234 Query: 244 GKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G+ ++ E+L +R GFPV+ V +++YY M++IR TLP+DIDG+ Sbjct: 235 GEVTDDVSFHRHSEILASLRAWGFPVSPLVELVYGSEELLNYYRRMETIRDTLPFDIDGI 294 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 VYK+D+ S Q+++G AR+PRW I+HKF ++ +T + I+IQIGRTG TPVARL PV Sbjct: 295 VYKLDDLSGQREMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQ 354 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G +T+ATLHN D I L D+R+GD V+V+RAG+VIP+VV +I + R Sbjct: 355 VAGVTVTSATLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVTVITDSRP 403 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 A +S P CP+C S +VR+ A RC+G LAC AQ+ E ++HFVSR A + Sbjct: 404 LGATAWSMPMACPVCGSEIVRETG------AAVWRCSGELACPAQRKEAIRHFVSRRAMD 457 Query: 483 IEGLGKQQLDFFFK--------------------------SEDPAFSIRIPADIFTLQRR 516 +EGLG + ++ ++ P +R D T R Sbjct: 458 VEGLGVKCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRY 517 Query: 517 QQ------------------TSTTKIENILGFGD-----------VSVTNLYDSINKRRN 547 QQ +I+ + NL +I++ R Sbjct: 518 QQLEEILRTVGVDLSGEGDVPKHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAIDRSRQ 577 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +LERF+F+LG+ HVG A++LA + Q + VP +G Sbjct: 578 TTLERFLFALGMTHVGETTAKALAHSFGDLAIIRQLPWPLFKC----------VPDIGGE 627 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 +A+AI F P N A++ L++ H Sbjct: 628 VARAIGHFMDQPANQQAIDDLVERGVRITDTHPPTS 663 Score = 147 bits (370), Expect = 9e-33, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 4/147 (2%) Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSI 636 A + +L++ V AQ++ E++Q+P NI L + + Sbjct: 691 LAALAPTLPLLAEAALDTLLQ-AGVSQPAAQSLTEWFQSPDNISLARRLQHCCDVLLAQL 749 Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696 ++ ++ + + +V TG L + R A + LGA + +S+KT ++ G++PGS Sbjct: 750 PSADRAHTAPLNGQSVVLTGKLASLTREAAATRLEMLGAKIVGSVSKKTSFLVAGEDPGS 809 Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYNT 723 KL+KA L V I +E + L L QY+ Sbjct: 810 KLDKAHALHVDIWDEARLLAFLGQYSA 836 >gi|220929395|ref|YP_002506304.1| DNA ligase, NAD-dependent [Clostridium cellulolyticum H10] gi|254781296|sp|B8I3I1|DNLJ_CLOCE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219999723|gb|ACL76324.1| DNA ligase, NAD-dependent [Clostridium cellulolyticum H10] Length = 657 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 175/711 (24%), Positives = 318/711 (44%), Gaps = 65/711 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + + + + YYQ + I+ + EYD L + N Sbjct: 1 MADKIQLMKDKIEILDRAAKAYYQENTEIMSNIEYDKLYDELLELEKE----TGVVLSNS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +G E+ +L K H P LSL+K ++ L++++ + L K Sbjct: 57 PSIHVGYELLSNLPKERHEKPMLSLDKTKDVGTLKEWL------------GTQKGILSWK 104 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG I + Y+ G V A RG G GE ++ R +P +++ + +RGE I Sbjct: 105 LDGLTIVLTYQDGHLVKAVTRGTGEEGEVITNNARVFRNLP--VTIAYKGTLILRGEAII 162 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAK 252 +DF+ +N+E+ VG Y NPRN SG +R+LN R + FF L K + Sbjct: 163 RYSDFIKINNEIADVG-VKYKNPRNLCSGSVRQLNNKVTSERNVYFFGFSLVKADNVELD 221 Query: 253 GQY-EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + ++ GF + + ++ + + DGLV ++ + Sbjct: 222 NSRASQMNWLKNQGFDIVDFKEVTSSNIEETVQWF--SQNIEANDFPSDGLVLTFEDIAY 279 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 + LG A+ PR I+ K+ ++ T LL+I+ RTG++ P+A EPV + G ++ A Sbjct: 280 GESLGSTAKFPRDSIAFKWRDEIKETTLLNIEWSPSRTGLINPIAIFEPVELEGTTVSRA 339 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 ++HN ++GL+ + +GD + V +A +IP++ + + P Sbjct: 340 SIHNISIMEGLE-----------LGIGDTIGVYKANMIIPQISENLTRSGMA-----PIP 383 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C+ + + C A+Q++ HFV RDA N+EGL + L Sbjct: 384 EECPVCKGKT-----EIKQENGVKTLYCVNNECLAKQIKSFTHFVGRDAMNMEGLSEATL 438 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + I+ AD+F +++ + +I + G G+ S L SINK R + Sbjct: 439 EKLIAK----GLIKELADLFHIEKYKN----EILELEGLGEKSFNKLITSINKARKTTAV 490 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R ++SLGI +VG A+ + +Y+ + N ++ LI++ +GDI+A++ Sbjct: 491 RLLYSLGIPNVGLSNAKLICRYFK---------YDWNKIENAEFSELIQIGGIGDIMAES 541 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670 + F+ + + V+ +L E+ EN V TG++++ + R + ++ + Sbjct: 542 FIRFFSDEKKKVIVQDVLNELELE-EVQLSQSEQIFENLNFVITGSVEQFKNRDELKDVI 600 Query: 671 TQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQ 719 + G V+ ++ KT+ +I DN SK +KA++L + I+ E QFL L Sbjct: 601 EEKGGKVTGAVTSKTNYLINNDNMSNSSKNKKAKELNISIITEAQFLEWLN 651 >gi|71898271|ref|ZP_00680445.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1] gi|71732010|gb|EAO34067.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1] Length = 831 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 229/690 (33%), Positives = 351/690 (50%), Gaps = 91/690 (13%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + + L + + + Y+ +P I D++YD + R DA+ +PDLA P Sbjct: 1 MIPLDPAQRAAELRRRLQEANYHYHVLDQPRIPDADYDRMLRELDALEATYPDLA---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G + + +V H++P LSL ++ ++ +F+ RI + F+ E Sbjct: 58 DSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRITAHLGETAPG---FSAE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG I++RY+ G F+ A RGDG +GEDV+A +R +PTIP+ S P ++EVRGE Sbjct: 115 PKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTVLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249 VY+ + DF A N + G K ANPRN A+G LR+L+ R L+F+ +G+G+ ++ Sbjct: 175 VYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGIGEVTDD 234 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E+L +R GFPV+ V G+++YY M++IR TLP+DIDG+VYK+D+ Sbjct: 235 VSFHRHSEILASLRAWGFPVSPLVELVYGSEGLLNYYRRMETIRDTLPFDIDGIVYKLDD 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 S Q ++G AR+PRW I+HKF ++ +T + I+IQIGRTG TPVARL PV + G + Sbjct: 295 LSGQHEMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQVAGVTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 T+ATLHN D I L D+R+GD V+V+RAG+VIP+VV +I + R P + Sbjct: 355 TSATLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVAVITDSRPPGVTAW 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 S P CP+C S +VR+ A RC+G LAC AQ+ E ++HFVSR A ++EGLG Sbjct: 404 SMPMACPVCGSEIVRETG------AAVWRCSGELACPAQRKEAIRHFVSRRAMDVEGLGV 457 Query: 489 QQLDFFFK--------------------------SEDPAFSIRIPADIFTLQRRQQ---- 518 + ++ ++ P +R D T R QQ Sbjct: 458 KCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRYQQLEEI 517 Query: 519 --------------TSTTKIENILGFGD-----------VSVTNLYDSINKRRNISLERF 553 +I+ + NL +I+ R +LERF Sbjct: 518 LLTVGVDLSGEGDVPEHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAIDHSRQTTLERF 577 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F+LG+ HVG A++LA + Q + VP +G +A+AI Sbjct: 578 LFALGMTHVGETTAKALAHSFGDLAIIRQLPWPLFKC----------VPDIGGEVARAIG 627 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 F P N A++ L++ H Sbjct: 628 HFMDQPANQQAIDDLVERGVRITDAHPPTS 657 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 4/147 (2%) Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSI 636 A + D +L++ V AQ++ E++Q+P NI L + + Sbjct: 685 LATLAPTLPLLAETDLDALLQ-AGVPQPAAQSLTEWFQSPDNISLARRLQHCCDVLLAQL 743 Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696 ++ ++ + + +V TG L + R A + LGA + +S+KT ++ G++PGS Sbjct: 744 PSPDRAHTAPLNGQSVVLTGKLASLTREAAATRLEMLGAKIVGSVSKKTSFLVAGEDPGS 803 Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYNT 723 KL+KA L V I +E + L L+QY+ Sbjct: 804 KLDKAHALHVDIWDEARLLAFLEQYSA 830 >gi|71899829|ref|ZP_00681979.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1] gi|254782317|sp|B0U5G7|DNLJ_XYLFM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|71730420|gb|EAO32501.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1] Length = 831 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 229/690 (33%), Positives = 352/690 (51%), Gaps = 91/690 (13%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + + L + + + Y+ +P I D++YD + R DA+ +PDLA P Sbjct: 1 MIPLDPAQRAAELRRRLQEANYHYHVLDQPRIPDADYDRMLRELDALEATYPDLA---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G + + +V H++P LSL ++ ++ +F+ RI + F+ E Sbjct: 58 DSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRITARLGETAP---SFSAE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG I++RY+ G F+ A RGDG +GEDV+A +R +PTIP+ S P ++EVRGE Sbjct: 115 PKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTVLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT-SE 248 VY+ + DF A N + G K ANPRN A+G LR+L+ R L+F+ +G+G+ + Sbjct: 175 VYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGIGEVADD 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+L +R GFPV+ V G+++YY M++IR TLP+DIDG+VYK+D+ Sbjct: 235 VSFHSHSEILASLRAWGFPVSPLVELVYGSEGLLNYYRRMETIRDTLPFDIDGIVYKLDD 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 S Q ++G AR+PRW I+HKF ++ +T + I+IQIGRTG TPVARL PV + G + Sbjct: 295 LSGQHEMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQVAGVTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 T+ATLHN D I L D+R+GD V+V+RAG+VIP+VV +I + R P + Sbjct: 355 TSATLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVAVITDSRPPGVTAW 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 S P CP+C S +VR+ A RC+G LAC AQ+ E ++HFVSR A ++EGLG Sbjct: 404 SMPMACPVCGSEIVRETG------AAVWRCSGELACPAQRKEAIRHFVSRRAMDVEGLGV 457 Query: 489 QQLDFFFK--------------------------SEDPAFSIRIPADIFTLQRRQQ---- 518 + ++ ++ P +R D T R QQ Sbjct: 458 KCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRYQQLEEI 517 Query: 519 --------------TSTTKIENILGFGD-----------VSVTNLYDSINKRRNISLERF 553 +I+ + NL +I++ R +LERF Sbjct: 518 LRTVGVDLSGEGDVPEHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAIDRSRQTTLERF 577 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F+LG+ HVG A++LA + Q + VP +G +A+AI Sbjct: 578 LFALGMTHVGETTAKALAHSFGDLAIIRQLPWPLFKC----------VPDIGGEVARAIG 627 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 F P N A++ L++ H Sbjct: 628 HFMDQPANQQAIDDLVERGVRITDAHPPTS 657 Score = 147 bits (370), Expect = 8e-33, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 4/147 (2%) Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSI 636 A + D +L++ V AQ++ E++Q+P NI L + + Sbjct: 685 LATLAPTLPLLAEADLDALLQ-AGVPQPAAQSLTEWFQSPDNISLARRLQHCCDVLLAQL 743 Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696 ++ ++ + + +V TG L + R A + LGA + +S+KT ++ G++PGS Sbjct: 744 PSPDRAHTAPLNGQSVVLTGKLASLTREAAATRLEMLGAKIVGSVSKKTSFLVAGEDPGS 803 Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYNT 723 KL+KA L V I +E + L L+QY+ Sbjct: 804 KLDKAHALHVDIWDEARLLDFLEQYSA 830 >gi|297196946|ref|ZP_06914343.1| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083] gi|297146537|gb|EDY59948.2| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083] Length = 712 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 201/755 (26%), Positives = 320/755 (42%), Gaps = 90/755 (11%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M E + + + YY+ + D YD L R A Sbjct: 16 MTGMTTPAAEIMDGAAYAQAVEDAV----KASAAYYEGGTSALDDDAYDRLVRGIAAWET 71 Query: 61 AFPDLARSEDPNGPLNKI-GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119 PD PN P K+ GG + V H++ LSL+ +++ ED + + R Sbjct: 72 DHPDQVL---PNSPTGKVAGGAVVGD---VPHTVAMLSLDNVFSPEDFTAWTVSLARRIG 125 Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179 F++EPK+DG I RY +G+ RGDG +GEDVS I + +P L Sbjct: 126 ---HEVRRFSVEPKLDGLAIAARYTQGRLARLITRGDGIAGEDVSHAIGTLEGLPEKLDQ 182 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFF 239 + +EVRGEV ++ F N+ A G +P+AN R A++G LR + F Sbjct: 183 PV--TVEVRGEVLMTTAQFEHANEVRTAHGGQPFANARGASAGTLRAKDRAYTVPMTFFG 240 Query: 240 VHGLGKTSEIFAKG-------QYEMLQKMRCLGFPVNNGV----RQANTFHGIVSYYNEM 288 L A +++ +G A T ++ E+ Sbjct: 241 YSLLSLPDADSALTERLNGLAHSDLMDLTAQMGVNTTATTAAPGIIATTVEEVLDRVREI 300 Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348 ++R+ LP+ IDG+V K D + Q+ G +R+PRW I++K + TRLLD++ +GR Sbjct: 301 AALRAELPFGIDGIVIKADLAADQQAAGSGSRAPRWAIAYKLPAVEKITRLLDVEWNVGR 360 Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408 TGI+ P LEPV I GA IT ATLHN I R +R+GD V+V RAG+ Sbjct: 361 TGIVAPRGVLEPVEIDGATITYATLHNPADIAR-----------RGLRLGDHVMVHRAGD 409 Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 VIP++ + + R D QP +FP CP C S + RC G C Sbjct: 410 VIPRIEAPVAHLRTGDEQPIAFPEVCPRCGSAID--------TSQERWRCEQGRNC--HL 459 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 + L + RD +IEGLG ++ + A + AD+FTL R Q + Sbjct: 460 VASLSYAAGRDQLDIEGLGVTRIVQLVE----AGLVTDLADLFTLTRDQL------LALE 509 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 G S NL +I + L R + +LG+R G ++R +A+++ + Sbjct: 510 RMGATSTDNLLTAIAAAKGQPLSRVLCALGVRGTGRSMSRRIARHFATMDTIRAA----- 564 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---------- 638 D ++ +V +G A +IV ++ L+ Sbjct: 565 -----DADAMQQVEGIGTEKAPSIVAELAELA--PLIDKLIAAGVNMTEPGVTPPPAAGD 617 Query: 639 ------HEKNVSSEIENKKLVFTGT----LQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 K + +V TG L+K+ R++ E + + G S+ +S+KT ++ Sbjct: 618 TDAAAGGTKAAGGPLAGMTVVVTGAMTGALEKLSRNQMNELIERAGGRSSSNVSKKTTLV 677 Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 + G+ GSK KA+ LG+++ ++F L+ + + Sbjct: 678 VAGEGAGSKRAKAEDLGIRLATPDEFAALVADFTS 712 >gi|167041226|gb|ABZ05983.1| putative NAD-dependent DNA ligase adenylation domain protein [uncultured marine microorganism HF4000_001N02] Length = 727 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 175/732 (23%), Positives = 301/732 (41%), Gaps = 85/732 (11%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L Q +++H D YY + P+I D+EYD L + P L +++ Sbjct: 13 ARIEELAQLLAHHSDLYYNEAAPVITDAEYDLLFDELKRLDPTHPQL----------DRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + KV H P SL+K + ++ F+ + + F +PK+DG+ Sbjct: 63 GSDPAPGSVKVEHLFPMQSLDKASEVAEISHFVA-------QTTAHGRRFVCQPKLDGSA 115 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 +++ Y +G+ V AA RG+G GEDV+A R IP IP SL +RGEV + F Sbjct: 116 LSLEYRRGRLVRAATRGNGERGEDVTANARRIPNIP--ESLGWDGDCHIRGEVVMPLETF 173 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD---ITRYLNFFVHGLGKTSEIF----- 250 + NPRN A+G LR+ + L+F +G+ Sbjct: 174 RSKYAS-------FAPNPRNLAAGSLRQKHVKAGKGDAADLSFHAYGVMFPGLDHKHPDS 226 Query: 251 -----AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV--------------SYYNEMKSI 291 + + + G + Sbjct: 227 PAPPDFNHDSQAIDWLTQNGIAAAGNEVVEAGVDEGIEEAEADEAVAEALLQVTENWARK 286 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R T +++DG+V K+DEF ++ LG+ A PRW ++ KF ++A+T LL +D Q GRTG Sbjct: 287 RDTADWELDGVVIKLDEFRKRELLGKTAHHPRWALAWKFPPEEATTVLLGVDWQTGRTGT 346 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVAR+ PV + G + N TLHN I+ L I VGDRV + R G+VIP Sbjct: 347 VTPVARVAPVRVSGVTVENTTLHNAGEIERL-----------GISVGDRVRITRRGDVIP 395 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 K+V+++ D P + K R + + Sbjct: 396 KIVEVLGEATSADLDNRFHADGTPFAD-PLPLRRGVKIPANCPRCRSGLQEDGAFIRCFN 454 Query: 472 LKHFVSRDAFNIEGLG-----KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN 526 L+ SR +I + + A ++ D++ L + E Sbjct: 455 LE-CPSRLERSILYWCRALEMDGIGEKLAEQLCEAGLVKTLPDLYRLSGKDL------EG 507 Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 + + S N+ ++ + + L F+ +LG+ +G E+A A+ S + + Sbjct: 508 LERMAEKSAANVIAQLDDSKTLDLAAFLAALGLPGIGPELAGGFAQEIGS----STAMFE 563 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 ++A + LIR+ VG+ +A + + VE L+ ++ + + S Sbjct: 564 LLADSEAAVERLIRIEGVGETVAGSFLSGL--EMRREMVEDLVDVLTITDVEAVEKSGS- 620 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + + TGTL + R + + G V + +S K D ++ G++ G KL+KA +L V Sbjct: 621 LTGQTFCITGTLTR-PRKEVALMIKAAGGKVVSAVSGKLDHLVAGESAGLKLDKANRLSV 679 Query: 707 KIMNEEQFLFLL 718 +++E + L ++ Sbjct: 680 NVLSEAEVLSMI 691 >gi|299067453|emb|CBJ38652.1| DNA ligase [Ralstonia solanacearum CMR15] Length = 813 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 226/679 (33%), Positives = 339/679 (49%), Gaps = 73/679 (10%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M K + S ++L ++ + YY +P + D+EYD L R +A+ Sbjct: 1 MSKTEHPA----SGASPETRAAALRATLNRYAHEYYVLDQPSVPDAEYDRLYRELEALEA 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFW 118 P+L P+ P ++GG + V H +P LS+ + F + R Sbjct: 57 DHPEL---RTPDSPTLRVGGAVLPEFAPVRHVVPMLSIRTETDTTAGGALDFDASVRREL 113 Query: 119 QKKD-DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP--- 174 + D + + E K DG I +RYE+G V AA RGDG +GEDV+ IR I IP Sbjct: 114 GLAESDPPVEYAAELKFDGLAINLRYERGFLVQAATRGDGATGEDVTQNIRTIRQIPLGL 173 Query: 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR 234 R + +P+++EVRGEVY+ ++DF LN G K + NPRN A+G +R+L+P Sbjct: 174 RPVDGAVPDVLEVRGEVYMRRDDFERLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAE 233 Query: 235 YL-NFFVHGLGK--TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 +FF +GLG+ + ML + GFPV+ G+V ++ + + Sbjct: 234 RPLSFFAYGLGEAAGWSGMPETHSGMLDALVAYGFPVSKERAAVTGGEGLVQFHAAIGAK 293 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R +LP+DIDG+VYKV+ +LQ++LG R R PRW ++HK+ ++A T + I +Q+GRTG Sbjct: 294 RDSLPFDIDGVVYKVNSLALQRELGFRTREPRWAVAHKYPAQEALTTVESIGVQVGRTGA 353 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARL PV +GG +TNATLHNED ++ +D+RVGD V+V+RAG+VIP Sbjct: 354 ITPVARLVPVFVGGVTVTNATLHNEDEVRR-----------KDVRVGDTVIVRRAGDVIP 402 Query: 412 KVVDIIVNER---------------HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456 +VV +++ R P PF P CP+C S VVR+ A Sbjct: 403 EVVAVVLERRPMEDMPGSDLFNPAQQPKHPPFELPKSCPVCGSHVVREEGE------AVA 456 Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516 RC+GGL CSAQ+ E ++HF R +IEGLG++ +D + E + AD+F L Sbjct: 457 RCSGGLFCSAQRKEAIRHFAGRRMMDIEGLGERYIDNLVELE----YVHGIADLFRLTLD 512 Query: 517 QQTSTTKIENIL-----------GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 + + NL D I + L RF+F+LGIRHVG Sbjct: 513 DFLEMKRRADERDGVTPETVAAGKIATKWAENLLDGIRASKTPPLARFLFALGIRHVGES 572 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 A++LA + S + + L+ +P VG +A+AI +F+ P+N A+ Sbjct: 573 TAKTLADWLGSLAVIRRAPAPL----------LLTLPDVGATVAEAIADFFAEPKNQQAL 622 Query: 626 EALLKEVSPSIGRHEKNVS 644 +ALL G H + Sbjct: 623 DALLAAGVAPQGEHAPSAK 641 Score = 166 bits (421), Expect = 1e-38, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 17/167 (10%) Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LG+ + A ++ LA S A + D ++ +++ + Sbjct: 654 ALGVPKLTAIRSKQLATLVPSLAQLAHVDTAQLEGLPAD-------------VSASLLSW 700 Query: 616 YQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + + +EAL E+ ++ + K +V TGTL + R +A+ + Sbjct: 701 LEADDHRAGLAQLEALRAELLAAMPAGAAE-EGALSGKTVVLTGTLPTLSRDEAKAMLEA 759 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GA VS +S+KTD ++ G+ GSKL +AQ+LGV++++E L LLQ Sbjct: 760 AGAKVSGSVSKKTDYVVAGEEAGSKLARAQELGVRVLDEAGMLALLQ 806 >gi|170739961|ref|YP_001768616.1| DNA ligase, NAD-dependent [Methylobacterium sp. 4-46] gi|254781369|sp|B0UQ51|DNLJ_METS4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|168194235|gb|ACA16182.1| DNA ligase, NAD-dependent [Methylobacterium sp. 4-46] Length = 827 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 260/651 (39%), Positives = 370/651 (56%), Gaps = 50/651 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + P+E ++ E+AR +L EI+ HD Y+ PII D+ YD+L+RR +AI Sbjct: 1 MAAQTTRPVEEITAEEARAAHEALSAEIAEHDRRYHGEDAPIISDAAYDSLRRRLEAIEE 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FPDLA + +G + + KV H++P LSL + E++ +F+ R+ RF Sbjct: 61 RFPDLAGTGAA---SASVGAKASDKFAKVRHAVPMLSLGNAFADEEIEEFVERVRRFLGL 117 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 S+ T EPKIDG +++RYE G+ V AA RGDG GEDV+A +R I +P L+ Sbjct: 118 PASESLAVTAEPKIDGLSLSLRYEGGRLVTAATRGDGEVGEDVTANVRTIREVPERLAGP 177 Query: 181 I-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238 PEI EVRGEVY+S DF A+N G+ +ANPRNAA+G LR+L+P+ +R L F Sbjct: 178 DVPEICEVRGEVYLSHADFAAINARQEEAGKPLFANPRNAAAGSLRQLDPSITASRPLRF 237 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 F + G+ S A+ Q ++ R G PVN + + ++++Y +++ R+ L YD Sbjct: 238 FAYAAGEMSTWPAETQSGLIAAFRRFGLPVNPRTTRCTSVAEMLAHYRAIETERADLGYD 297 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKVD F+LQ++LG AR+PRW ++HKF ++A T + I+I +GRTG L P+ARL Sbjct: 298 IDGVVYKVDSFALQRRLGFVARAPRWALAHKFPAQRAVTTIEAIEINVGRTGSLNPLARL 357 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMR------------------GGRDIRVGDR 400 PV +GG +++NATLHNEDY++G+DA G +R G D+RVGD Sbjct: 358 RPVTVGGVVVSNATLHNEDYVRGIDADGTPIRSGINIWDGFALRTDVDLSRGSDVRVGDT 417 Query: 401 VLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG 460 V+V RAG+VIPKV D+++ R DA P+ FP CP C S VR NP+TGKL + RCTG Sbjct: 418 VVVLRAGDVIPKVADVVLERRPADAVPYRFPEICPACGSHAVRSYNPRTGKLDSVRRCTG 477 Query: 461 GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR---- 516 GL C AQ ERLKHFVSR+A +IEG G+ + F+ A +R PAD+F L Sbjct: 478 GLICPAQGQERLKHFVSRNALDIEGFGETSITTLFE----AGLVRQPADLFRLDFAPLKA 533 Query: 517 ------------------QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 + K + D ++ NL ++ RR + L RFIF+LG Sbjct: 534 AIVARRQALSAERALASGKAPEARKTKAKASEEDKAIRNLLAAVEARRVVPLNRFIFALG 593 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN-NDDWLSLIRVPLVGDII 608 I VG A++LAK++ + + AH DW+ L + VG Sbjct: 594 IEQVGEATAKALAKHFPDMPALMEGVRAAAAHQPGPDWVGLAALNRVGPTT 644 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 81/153 (52%), Gaps = 2/153 (1%) Query: 568 RSLAKYYLSYQNFAQE-INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 +L + Y S + + D + L +G + ++++F+ N+ AVE Sbjct: 674 EALLEAYGSPEGVRAAVMRACRQRPGDAYRHLADDSEIGAVTTASLIQFFSEAHNVAAVE 733 Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 ALL +V + + +VFTG+L+++ R +A+ +LGA VS +S KTD Sbjct: 734 ALLAQVRTERAAPPAAAA-AFSGRTVVFTGSLERMTRSEAKATAERLGAKVSGSVSAKTD 792 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +++ G G+KL+ A++ GV++++E ++L +++ Sbjct: 793 LVVAGPGAGTKLKDAEKHGVRVISEAEWLAMVE 825 >gi|153813883|ref|ZP_01966551.1| hypothetical protein RUMTOR_00089 [Ruminococcus torques ATCC 27756] gi|331088166|ref|ZP_08337086.1| DNA ligase [Lachnospiraceae bacterium 3_1_46FAA] gi|145848279|gb|EDK25197.1| hypothetical protein RUMTOR_00089 [Ruminococcus torques ATCC 27756] gi|330408822|gb|EGG88285.1| DNA ligase [Lachnospiraceae bacterium 3_1_46FAA] Length = 653 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 181/715 (25%), Positives = 306/715 (42%), Gaps = 68/715 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + ++ K + L + ++ Y Q + I+ + EYD L ++ + Sbjct: 1 MEKKKKTKRMRELVELLNKARRAYEQENTEIMSNFEYDRLYDELLSLEKE----LETTLA 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +G E+ L K H P LSL+K ++E LR+F+ + Sbjct: 57 SSPTVNVGYEVLSELPKERHETPMLSLDKTKDVERLREFL------------GDQQAVIS 104 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG I + YE G A RG+G GE V+ + +P LS+ + +RGE Sbjct: 105 WKMDGLTIVLTYENGVLKKAVTRGNGEIGEVVTNNAKVFRNVP--LSIPFKGELVLRGEA 162 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 IS DF +N+E I Y NPRN SG +R+LN R + F+ L K + Sbjct: 163 VISYKDFEKINEE-IGDADAKYKNPRNLCSGSVRQLNNEVTAKRNVRFYAFTLVKADNVD 221 Query: 251 AKGQYEMLQKM-RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + K + GF V G DGLV D+ Sbjct: 222 FENSRAYQLKWLQEQGFDVVEHHLVTRDTVG--DEVAWFAEHIRENEVPSDGLVLIYDDI 279 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 S + LG A+ PR + K+ ++ T + +I+ RTG++ PVA +PV + G ++ Sbjct: 280 SYGQSLGTTAKFPRDSFAFKWEDEVRKTTIREIEWSPSRTGLINPVAIFDPVELEGTTVS 339 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A++HN ++ L+ + +GD V V +A +IP++ + + Sbjct: 340 RASVHNISIMEELE-----------LGIGDTVTVYKANMIIPQIAENLTRSGVS-----E 383 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP+C+ + T L + + F SRDA NIEGL + Sbjct: 384 IPKECPVCKKPTKISMENNTKTLYCMNPKCQAKHV-----KSFSLFASRDAMNIEGLSEA 438 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ F + ++ DIF L R + +I+ + GFG+ S NL I R + Sbjct: 439 TLEKFIIN----GYVKDFTDIFHLDRYEA----EIKTMEGFGEKSYENLRKRIENARKTT 490 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R I+SLGI ++G A+ + + + L + VG +IA Sbjct: 491 LPRLIYSLGIPNIGISNAKMICRALG---------EDPKRVIRATEEELSAISGVGGVIA 541 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQE 668 VE++++ ++ + LLKEV + E+ + V TG+++ R + +E Sbjct: 542 GTFVEYFKDTAHVDVFDRLLKEVELTKETSEE--DQKFAGVNFVITGSVEHFVNRAQVKE 599 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGS---KLEKAQQLGVKIMNEEQFLFLLQQ 720 + + G V+ ++ KT+ +I D GS K +KA++LG+ I++EE FL ++ + Sbjct: 600 EIEKRGGKVTGSVTSKTNYLINND-TGSGTAKNKKARELGIPIISEEDFLQMMNE 653 >gi|77747612|ref|NP_299833.2| NAD-dependent DNA ligase LigA [Xylella fastidiosa 9a5c] gi|166216281|sp|Q9PAG2|DNLJ_XYLFA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 831 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 229/690 (33%), Positives = 352/690 (51%), Gaps = 91/690 (13%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + + L + + Y+ +P I D++YD + R DA+ A+PDLA P Sbjct: 1 MIPLDPAQRAAELRCRLQEANYHYHVLDQPRIPDADYDRMLRELDALEAAYPDLA---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G + + +V H++P LSL ++ ++ +F+ RI + F+ E Sbjct: 58 DSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRITACLGETAPG---FSAE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190 PK+DG I++RY+ G F+ A RGDG +GEDV+A +R +PTIP+ S P ++EVRGE Sbjct: 115 PKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTVLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249 VY+ + DF A N + G K ANPRN A+G LR+L+ R L+F+ +G+G+ ++ Sbjct: 175 VYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGIGEVTDD 234 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E+L +R GFPV+ V +++YY M++IR TLP+DIDG+VYK+D+ Sbjct: 235 VSFHRHSEILASLRAWGFPVSPLVELVYGSEELLNYYRRMETIRDTLPFDIDGIVYKLDD 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 S Q+++G AR+PRW I+HKF ++ +T + I+IQIGRTG TPVARL PV + G + Sbjct: 295 LSGQREMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQVAGVTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 T+ATLHN D I L D+R+GD V+V+RAG+VIP+VV +I + R A + Sbjct: 355 TSATLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVTVITDSRPLGATAW 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 S P CP+C S +VR+ A RC+G LAC AQ+ E ++HFVSR A ++EGLG Sbjct: 404 SMPMACPVCGSEIVRETG------AAVWRCSGELACPAQRKEAIRHFVSRRAMDVEGLGV 457 Query: 489 QQLDFFFK--------------------------SEDPAFSIRIPADIFTLQRRQQ---- 518 + ++ ++ P +R D T R QQ Sbjct: 458 KCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRYQQLEEI 517 Query: 519 --------------TSTTKIENILGFGD-----------VSVTNLYDSINKRRNISLERF 553 +I+ + NL +I++ R +LERF Sbjct: 518 LRTVGVDLSGEGDVPKHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAIDRSRQTTLERF 577 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F+LG+ HVG A++LA + Q + VP +G +A+AI Sbjct: 578 LFALGMTHVGETTAKALAHSFGDLAIIRQLPWPLFKC----------VPDIGGEVARAIG 627 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 F P N A++ L++ H Sbjct: 628 HFMDQPANQQAIDDLVERGVRITDTHPPTS 657 Score = 147 bits (370), Expect = 9e-33, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 4/147 (2%) Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSI 636 A + +L++ V AQ++ E++Q+P NI L + + Sbjct: 685 LAALAPTLPLLAEAALDTLLQ-AGVSQPAAQSLTEWFQSPDNISLARRLQHCCDVLLAQL 743 Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696 ++ ++ + + +V TG L + R A + LGA + +S+KT ++ G++PGS Sbjct: 744 PSADRAHTAPLNGQSVVLTGKLASLTREAAATRLEMLGAKIVGSVSKKTSFLVAGEDPGS 803 Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYNT 723 KL+KA L V I +E + L L QY+ Sbjct: 804 KLDKAHALHVDIWDEARLLAFLGQYSA 830 >gi|309782142|ref|ZP_07676872.1| DNA ligase, NAD-dependent [Ralstonia sp. 5_7_47FAA] gi|308919208|gb|EFP64875.1| DNA ligase, NAD-dependent [Ralstonia sp. 5_7_47FAA] Length = 813 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 224/662 (33%), Positives = 338/662 (51%), Gaps = 69/662 (10%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + L E++ + YY +P + D+EYD L R +A+ P+L P+ P + Sbjct: 14 EARAAWLRAELNRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEHPELK---TPDSPTLR 70 Query: 78 IGGEMNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQKKD-DNSIFFTLEPKI 134 +GG + V H IP LS+ E R F + R D D + + E K Sbjct: 71 VGGAVLPEFAAVRHVIPMLSIRTETDTTPNGARAFDASVRRELGLDDTDPPVEYAAELKF 130 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEV 191 DG I +RYE+G V AA RGDG +GEDV+ IR I IP + ++P+++EVRGEV Sbjct: 131 DGLAIGLRYERGYLVQAATRGDGTTGEDVTQNIRTIRQIPLGLSPVDGHVPDVLEVRGEV 190 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKT--SE 248 Y+ ++DF LN G K + NPRN A+G +R+L+P +FF +GLG+ + Sbjct: 191 YMRRDDFEKLNVRQRERGDKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEVVGWK 250 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 ML ++ GFPV+ G+V +++ + + R +LP+DIDG+VYKV+ Sbjct: 251 GMPGTHSGMLDALQAFGFPVSAERAAVKGGDGLVEFHDAIGAKRDSLPFDIDGVVYKVNS 310 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ++LG R+R PRW ++HK+ ++A T + ID+Q+GRTG +TPVARL PV +GG + Sbjct: 311 LALQRELGFRSREPRWAVAHKYPAQEALTTVESIDVQVGRTGAITPVARLVPVFVGGVTV 370 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER------- 421 TNATLHNED ++ +D+RVGD V+V+RAG+VIP+VV ++++ R Sbjct: 371 TNATLHNEDEVRR-----------KDVRVGDTVVVRRAGDVIPEVVSVVLDRRPLDDVPG 419 Query: 422 --------HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473 P PF P CP+C S VVR+ A RC+GGL CSAQ+ E ++ Sbjct: 420 SDLFNPRQQPKYPPFELPKTCPVCGSHVVREEGE------AVARCSGGLFCSAQRKEAIR 473 Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL----- 528 HF R +IEGLG++ +D + + AD++ L + + Sbjct: 474 HFAGRRMMDIEGLGERYIDNLVE----LDYVHGIADLYKLTLEDFLEMKRRADERDGVKP 529 Query: 529 ------GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582 NL + I + L RF+F+LGIRHVG A++LA + S + Sbjct: 530 ETVSAGKIATKWAENLLEGIQASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAMIRR 589 Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642 ++ VG +A+AI +F+ P+N A++ALL+ G H N Sbjct: 590 APAPLLLALP----------DVGATVAEAIADFFAEPKNQQALDALLEAGVAPQGEHAPN 639 Query: 643 VS 644 Sbjct: 640 AK 641 Score = 173 bits (437), Expect = 1e-40, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 15/166 (9%) Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LG+ + A A+ LA + A + +A D + +++E+ Sbjct: 655 LGVPKLTATRAKQLAVAAPTLAQLASVEPDQLAGLPAD-------------VTASLLEWL 701 Query: 617 QNPRNICAVEAL--LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + + + L L+ + E + K +V TGTL + R +A+ + G Sbjct: 702 ASHDHRAQLAKLDALRGELLAAMPAEAAEEGVLAGKTVVLTGTLPNLTRDEAKAMLEAAG 761 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A VS +S+KTD ++ G++ GSKL KA++L VK+++E L LL++ Sbjct: 762 AKVSGSVSKKTDYVVAGEDAGSKLAKAEELNVKVLDEAGMLALLKK 807 >gi|166215830|sp|Q4A899|DNLJ_MYCH7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|144575353|gb|AAZ53640.2| DNA ligase [Mycoplasma hyopneumoniae 7448] Length = 692 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 210/736 (28%), Positives = 346/736 (47%), Gaps = 74/736 (10%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-G 73 Q R ++ L ++I + YYQ P++ D YD R + + L E+ N Sbjct: 5 SQIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQS 64 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+G ++ KV HS P LSL K ++ E+L K+ + + ++ F +EPK Sbjct: 65 PSQKVGSKITSKFEKVAHSSPMLSLNKAYSNEELEKWAKKAREILK-----TVTFFVEPK 119 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG +++ Y+ G + A RGDG GE+V I +N E +EVRGE+YI Sbjct: 120 IDGIALSLFYQNGNLIKALTRGDGVFGENVLVNALKINDEFIPKKINYLEDLEVRGEIYI 179 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD---------------ITRYLNF 238 + F +L + K + NPRNAASGILRR RYL Sbjct: 180 DNSTFASLQ-----LETKKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFRYLKS 234 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 F + L + Q++ + +R LGF VN ++ + + ++ + +K R L Y+ Sbjct: 235 FFYTLVNPEKHKINSQFDSINFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDFLNYN 294 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+V KV+EFS+ ++LG ++ P I+ KF + A T+LL I IGRTG +T A++ Sbjct: 295 IDGVVVKVNEFSIYEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTYNAKI 354 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV + G+ I++A L N YI+ L + + V +K+AGE+IP+++ + Sbjct: 355 EPVTLAGSKISSAILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQIIGSVH 403 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 N + FS CP C S +V + + C L+++ HF S+ Sbjct: 404 NYPKTN---FSIVKNCPKCNSELVNSESGLD-------QFCQNQFCPEIILQKIVHFCSK 453 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR----------QQTSTTKIENIL 528 +A NIE L +++++ F + I DIF L+ + + TK Sbjct: 454 NALNIESLAQKRIEKFLEK----GLISSACDIFYLKDKLELIYERLSNKNQLLTKQNASQ 509 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 S+ L + + + +NI R IF LGIR+VG + A+ L++Y + Sbjct: 510 SMQIKSIMKLLNEVERAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNLSELR------- 562 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648 N D+ L G +I +++++++ N +N + L N S+ Sbjct: 563 ---NLDFNLLKNQHDFGPVIIESLIDYFNNQKNSEQLNCLETVGFNFKTTFLTNQSNSWA 619 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 +G L K R + + + GA +++KTD +++G + GSK+EKA++ G+KI Sbjct: 620 --SFAISGKLSK-PRDEYVRIIEESGASFHESVTKKTDFLLLGQSAGSKIEKAKKAGIKI 676 Query: 709 MNEEQFLFLLQQYNTT 724 +NE QF L++ T Sbjct: 677 INEVQFFDLIKNSKKT 692 >gi|290962622|ref|YP_003493804.1| DNA ligase [Streptomyces scabiei 87.22] gi|260652148|emb|CBG75280.1| putative DNA ligase [Streptomyces scabiei 87.22] Length = 704 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 203/724 (28%), Positives = 318/724 (43%), Gaps = 86/724 (11%) Query: 30 YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89 YY + D YD L R A P+ P P K+ G V Sbjct: 33 RASAAYYTGGTSALDDDTYDRLVRGIAVWEAAHPEQVL---PESPTGKVAGGAVEG--DV 87 Query: 90 THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149 H++ LSL+ +++ E+ + + R + F +EPK+DG + RY +G+ Sbjct: 88 PHTVAMLSLDNVFSAEEFTAWTASLARRIG---HDVERFGVEPKLDGLAVAARYTRGRLT 144 Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209 RGDG +GEDVS I I +PR L+ + +EVRGEV ++ F N+ G Sbjct: 145 RLITRGDGTAGEDVSHAIGTIEGLPRELAEPV--TVEVRGEVLMTTAQFEHANEVRTEHG 202 Query: 210 RKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG--------QYEMLQKM 261 +P+ANPRNAA+G LR FF +GL A E++ + Sbjct: 203 GQPFANPRNAAAGTLRARERAYTVPMT-FFGYGLLALPGTDADSAARLGELAHSELMARA 261 Query: 262 RCLGFPVNNGVRQ----ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 LG A T ++ E+ +R+ LP+ IDG+V K D + Q+ G Sbjct: 262 AGLGVNTTASTAVPGVTAATVEEVLDRVKEIAGLRAELPFGIDGIVIKADLAADQRAAGS 321 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 R+PRW I++K + TRLL++ +GRTGI+ P LEPV I G+ IT ATLHN Sbjct: 322 GTRAPRWAIAYKLPAVEKITRLLEVQWNVGRTGIIAPRGVLEPVEIDGSTITYATLHNPA 381 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I RD+R+GD V+V RAG+VIP+V + + R D QP FP CP C Sbjct: 382 DITR-----------RDLRLGDHVMVHRAGDVIPRVEAPVAHLRTGDEQPIVFPEVCPRC 430 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S + RC G C + L + V RD ++EGLG ++ + Sbjct: 431 GSGIDTGEQ--------RWRCENGRNC--HLVASLSYAVGRDQLDVEGLGHTRVVQLVE- 479 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + AD+F L R Q S + G+ S NL +++ R L R + +L Sbjct: 480 ---AGLVADLADLFALTREQLLS------LDRMGETSTDNLLAALDTARGRPLSRVLCAL 530 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 G+R G ++R +A+++ + + D ++ RV +G A +IV Sbjct: 531 GVRGTGRSMSRRIARHFATMDDIRAA----------DAEAIQRVEGIGTEKAPSIVAELA 580 Query: 618 NPRNICAVEALLKEVSPS----------------IGRHEKNVSSEIENKKLVFTG----T 657 ++ L+ + + +V TG Sbjct: 581 ELA--PLIDKLVAAGVNMTEPGATPPAPAGDPEGPEEGAEGAGGPLAGMAVVVTGAMTGV 638 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L+K+ R++ E + + G S+ +S+KT +++ G+N GSK +A+ LGV++ ++F L Sbjct: 639 LEKLSRNQMNELIERAGGRASSSVSKKTSLVVAGENAGSKRARAESLGVRLAGPDEFAAL 698 Query: 718 LQQY 721 + + Sbjct: 699 VADF 702 >gi|72080605|ref|YP_287663.1| DNA ligase [Mycoplasma hyopneumoniae 7448] Length = 693 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 210/736 (28%), Positives = 346/736 (47%), Gaps = 74/736 (10%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-G 73 Q R ++ L ++I + YYQ P++ D YD R + + L E+ N Sbjct: 6 SQIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQS 65 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+G ++ KV HS P LSL K ++ E+L K+ + + ++ F +EPK Sbjct: 66 PSQKVGSKITSKFEKVAHSSPMLSLNKAYSNEELEKWAKKAREILK-----TVTFFVEPK 120 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG +++ Y+ G + A RGDG GE+V I +N E +EVRGE+YI Sbjct: 121 IDGIALSLFYQNGNLIKALTRGDGVFGENVLVNALKINDEFIPKKINYLEDLEVRGEIYI 180 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD---------------ITRYLNF 238 + F +L + K + NPRNAASGILRR RYL Sbjct: 181 DNSTFASLQ-----LETKKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFRYLKS 235 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 F + L + Q++ + +R LGF VN ++ + + ++ + +K R L Y+ Sbjct: 236 FFYTLVNPEKHKINSQFDSINFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDFLNYN 295 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+V KV+EFS+ ++LG ++ P I+ KF + A T+LL I IGRTG +T A++ Sbjct: 296 IDGVVVKVNEFSIYEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTYNAKI 355 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV + G+ I++A L N YI+ L + + V +K+AGE+IP+++ + Sbjct: 356 EPVTLAGSKISSAILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQIIGSVH 404 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 N + FS CP C S +V + + C L+++ HF S+ Sbjct: 405 NYPKTN---FSIVKNCPKCNSELVNSESGLD-------QFCQNQFCPEIILQKIVHFCSK 454 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR----------QQTSTTKIENIL 528 +A NIE L +++++ F + I DIF L+ + + TK Sbjct: 455 NALNIESLAQKRIEKFLEK----GLISSACDIFYLKDKLELIYERLSNKNQLLTKQNASQ 510 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 S+ L + + + +NI R IF LGIR+VG + A+ L++Y + Sbjct: 511 SMQIKSIMKLLNEVERAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNLSELR------- 563 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648 N D+ L G +I +++++++ N +N + L N S+ Sbjct: 564 ---NLDFNLLKNQHDFGPVIIESLIDYFNNQKNSEQLNCLETVGFNFKTTFLTNQSNSWA 620 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 +G L K R + + + GA +++KTD +++G + GSK+EKA++ G+KI Sbjct: 621 --SFAISGKLSK-PRDEYVRIIEESGASFHESVTKKTDFLLLGQSAGSKIEKAKKAGIKI 677 Query: 709 MNEEQFLFLLQQYNTT 724 +NE QF L++ T Sbjct: 678 INEVQFFDLIKNSKKT 693 >gi|17546117|ref|NP_519519.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) protein [Ralstonia solanacearum GMI1000] gi|81505313|sp|Q8XZJ7|DNLJ_RALSO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|17428413|emb|CAD15100.1| putative dna ligase (polydeoxyribonucleotide synthase [nad+]) protein [Ralstonia solanacearum GMI1000] Length = 813 Score = 382 bits (981), Expect = e-103, Method: Composition-based stats. Identities = 225/679 (33%), Positives = 338/679 (49%), Gaps = 73/679 (10%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M K + S ++L ++ + YY +P + D+EYD L R +A+ Sbjct: 1 MSKTEHPA----SGASPETRAAALRATLNRYAHEYYVLDQPSVPDAEYDRLYRELEALEA 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFW 118 P+L P+ P ++GG + V H +P LS+ + F + R Sbjct: 57 EHPEL---RTPDSPTLRVGGAVLPEFAPVRHVVPMLSIRTETDTTAGGALDFDASVRREL 113 Query: 119 QKKD-DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP--- 174 + D + + E K DG I +RYEKG V AA RGDG +GEDV+ IR I IP Sbjct: 114 GLAESDPPVEYAAELKFDGLAINLRYEKGFLVQAATRGDGATGEDVTQNIRTIRQIPLGL 173 Query: 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR 234 R + +P+++EVRGEVY+ ++DF LN G K + NPRN A+G +R+L+P Sbjct: 174 RPVGGAVPDVLEVRGEVYMRRDDFERLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAE 233 Query: 235 YL-NFFVHGLGK--TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 +FF +GLG+ ML + GFPV+ G+V ++ + + Sbjct: 234 RPLSFFAYGLGEAAGWSGMPDTHSGMLDALVAYGFPVSKERAAVKGGEGLVQFHAAIGAK 293 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R +LP+DIDG+VYKV+ +LQ++LG R R PRW ++HK+ ++A T + I +Q+GRTG Sbjct: 294 RDSLPFDIDGVVYKVNSLALQRELGFRTREPRWAVAHKYPAQEALTTVESIGVQVGRTGA 353 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARL PV +GG +TNATLHNED ++ +D+RVGD V+V+RAG+VIP Sbjct: 354 ITPVARLVPVFVGGVTVTNATLHNEDEVRR-----------KDVRVGDTVIVRRAGDVIP 402 Query: 412 KVVDIIVNER---------------HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456 +VV +++ R P PF P CP+C S VVR+ A Sbjct: 403 EVVAVVLERRPMEDVPGSDLFNPTQQPKHPPFELPRSCPVCGSHVVREEGE------AVA 456 Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516 RC+GGL CSAQ+ E ++HF R +IEGLG++ +D + E + AD++ L Sbjct: 457 RCSGGLFCSAQRKEAIRHFAGRRMMDIEGLGERYIDNLVELE----YVHGIADLYRLTLD 512 Query: 517 QQTSTTKIENIL-----------GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 + + NL D I + L RF+F++GIRHVG Sbjct: 513 DFLEMKRRADERDGVTPETVAAGKIATKWAENLLDGIRASKTPPLARFLFAMGIRHVGES 572 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 A++LA + S + + L+ +P VG +A+AI +F+ P+N A+ Sbjct: 573 TAKTLADWLGSLAIVRRAPAPL----------LLTLPDVGATVAEAIADFFAEPKNQQAL 622 Query: 626 EALLKEVSPSIGRHEKNVS 644 +ALL G H + Sbjct: 623 DALLTAGVAPQGEHPPSAK 641 Score = 164 bits (416), Expect = 3e-38, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 17/167 (10%) Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LG+ + A ++ LA S A + D +A +++ + Sbjct: 654 ALGVPKLTAIRSKQLATLVPSLAQLANVDTAQLEGLPAD-------------VAASLLAW 700 Query: 616 YQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + ++AL E+ ++ + K +V TGTL + R +A+ + Sbjct: 701 LDADDHRTRLGTLDALRAELLAAMPAGAAE-EGALSGKTVVLTGTLPTLSRDEAKAMLEA 759 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GA VS +S+KTD ++ G GSKL +AQ+LGV++++E L LLQ Sbjct: 760 AGAKVSGSVSKKTDYVVAGVEAGSKLARAQELGVRVLDEAGMLALLQ 806 >gi|322379711|ref|ZP_08054024.1| NAD-dependent DNA ligase LigA [Helicobacter suis HS5] gi|321147860|gb|EFX42447.1| NAD-dependent DNA ligase LigA [Helicobacter suis HS5] Length = 762 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 198/778 (25%), Positives = 327/778 (42%), Gaps = 97/778 (12%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++ L ++ + YY + P+I D+ YD L R+ +P P P ++ Sbjct: 6 EDYKHLVDKLCQYAYHYYVLASPLISDAIYDQLYRQVLDYETKYPQNIL---PYSPTQRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS-----------IF 127 GG + +L K TH + SLE ++N+E+L+ +I RI Sbjct: 63 GGVVLETLPKHTHKVRMWSLENVFNLEELQVWINRIVESEHALKTKGRISQTYPSASFTR 122 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 FT PK+DG + + YE G+ A++RG+G GE V+ + I +IP L + + IE+ Sbjct: 123 FTCSPKLDGASLNLYYENGQLQSASMRGNGLEGELVTHNAKTIHSIP--LIIPYTKPIEI 180 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT 246 RGEV + + DF ALN E + +AN RNA G LR+L+ R L F+ GLG Sbjct: 181 RGEVVLQREDFKALNAERLKQNLPLFANARNATVGSLRQLDSKIAAQRKLTFYPWGLGLV 240 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 E + + M ++ GF V + I + + RS + +D DG+V + Sbjct: 241 EEKYTSLKQSMQM-VKDWGFLSLEFV-LCESLEAIEETFKLFHTRRSEVTFDADGMVVML 298 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ LQ LG +SPR+ ++KF + T+LLD+ Q+GR+G +TPVA LEP+ + GA Sbjct: 299 DDLYLQSILGFTIKSPRFGFAYKFPATEKHTKLLDVLNQVGRSGAITPVALLEPIKLEGA 358 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 I+ ATL N I+ + + + D V++ R+G+VIPK++ + + R+ + Sbjct: 359 CISKATLDNYTQIQ-----------QQGLMINDTVVIVRSGDVIPKIIKPLKHLRNGTQK 407 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P + P+ CP CQS + + + + K + Sbjct: 408 PITPPTHCPACQSVLQKQPLNVCPECNLPLLLKNKPNFCPKCQILFKKYTHCPVCQTLLG 467 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 + + +S D F L+ ++ ++ + N + Sbjct: 468 KQHKKCPQCQS-DVTFPKHCLQCGGDLELKEYCYRCDLDLSNKDRYLFCPNKDCIARVKE 526 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYY------------------------LSYQNFAQ 582 +I L I+ +G ++ L + QN Q Sbjct: 527 SIVYFASKHGLEIKGLGDKVVAQLLQAGLIKGVIDLYSLEEKALLELEGWQQKKAQNLLQ 586 Query: 583 EINNIIAHN------------------------------NDDWLSLIRVPLVGD------ 606 I + + + + G Sbjct: 587 AITKSKQAPLWRFISALGIEHIGKGASKILAQHFGLEVFDKTYQEIASLEGFGAKGLKEE 646 Query: 607 --IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 IA + V F N ++ LL V+P I +K S ++KK+V TG+L+K R Sbjct: 647 EKKIAASFVRF--VKENKGLIKQLLTLVNP-IATEKKITPSFFKDKKIVITGSLEK-PRT 702 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + + LGA V +S KTD++I G+NPGSKLEKA++LG+++M E FL L+ Sbjct: 703 EISALLESLGAHVQTGVSSKTDLLIYGENPGSKLEKAKKLGIEVMEEVTFLERLKSEG 760 >gi|240047590|ref|YP_002960978.1| DNA ligase [Mycoplasma conjunctivae HRC/581] gi|239985162|emb|CAT05172.1| DNA ligase [Mycoplasma conjunctivae] Length = 673 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 209/719 (29%), Positives = 345/719 (47%), Gaps = 57/719 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + ++++ L ++I + Y+ P + D YD ++ + + + L E+ Sbjct: 1 MENHEIKQQILQLRKKIENWNHEYFDLQNPSVDDLIYDEELKKLKILENKYYFLFSLEEL 60 Query: 72 NG-PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 N P +IG + + KV HS P LSL K ++IE+L K++ + F + Sbjct: 61 NSSPTQQIGAQTSTKFNKVYHSSPMLSLNKAYDIEELEKWVKK------ANLVGEDNFYV 114 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 EPKIDG I + Y+KGK A RGDG GED+ I +N + +EVRGE Sbjct: 115 EPKIDGLSIALIYKKGKLSSALTRGDGLQGEDILHNALRIANKFIPKQINYQQDLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI------TRYLNFFVHGLG 244 ++IS DF L ANPRNAASG+LRR+ T YL+ F++ L Sbjct: 175 IFISNQDFQIL---QQNSNSSSLANPRNAASGLLRRIEKTSKNSKINDFDYLSCFIYNLV 231 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 K E + LGF +N A IV +++ +R L Y+IDG+V Sbjct: 232 NPQLHKIKNIKESYLFLEKLGFHLNPLSSLAKGLTNIVKQIGKIEKLRPQLEYNIDGVVI 291 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+++ + +QLG ++ P I+ KF ++ T+LLDI +GRTG +T A+LEP+N+ Sbjct: 292 KVNDYEIYEQLGRTSKFPHGAIAFKFEDQIVQTKLLDIFATVGRTGKITYNAKLEPINLL 351 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ A L N YI+ L I + VLVK++GE+IP+++ + + Sbjct: 352 GTTVSAAILPNYKYIENL-----------KIAINSDVLVKKSGEIIPQIIASVQDH---Q 397 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A F S CP C +V + + AC A QL+++ HF S+ AFNI Sbjct: 398 ATNFQKISHCPSCNFELVDSPSGID-------QFCQNFACPAIQLKKIAHFCSKSAFNIA 450 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR-QQTSTTKIENILGFGDVSVTNLYDSIN 543 L ++++ + I+ DIF L+ + + + + S+TN + I Sbjct: 451 SLAEKRIQTLIDTN----LIKNSCDIFFLKDNLDEMHSRFAKEKVKLKAKSITNFLNEIE 506 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + RFIF+LGI+++G + A+++AKY + N D+ L Sbjct: 507 LSKKNDFYRFIFALGIKNIGLKAAKAIAKYVGDVEQLI----------NFDFAQLENDYD 556 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 G I+ Q+++EF+ N N + K+V + +K+ TG L K R Sbjct: 557 FGPIMVQSLLEFFANSNNQELL-NCFKKVDFAFKPTQKDFP-VWA--SFAITGKLSK-SR 611 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + ++ + + GA + L++KT ++ G++ GSK+EKA+ + I+NEEQF L+++ Sbjct: 612 DQFEKIIVESGAQFDSNLNKKTTYLLAGESSGSKIEKAKAYNINIINEEQFWDLIEKQK 670 >gi|167647059|ref|YP_001684722.1| NAD-dependent DNA ligase [Caulobacter sp. K31] gi|190359242|sp|B0T1N5|DNLJ_CAUSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|167349489|gb|ABZ72224.1| DNA ligase, NAD-dependent [Caulobacter sp. K31] Length = 792 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 244/623 (39%), Positives = 342/623 (54%), Gaps = 35/623 (5%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I + L+ QA +EL L +++ HD Y+Q P I D+EYDALKRR I FP L Sbjct: 4 IAVADLTEAQAAEELERLADDLAAHDLRYHQQDAPTISDAEYDALKRRNLDIEDRFPHLV 63 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R N P ++G V H +P LSL+ ++ ++ +F RI RF + + + Sbjct: 64 RD---NSPSMRVGAARAEQFSPVEHGVPMLSLDNAFSNDEATEFDARIRRFLRLT-NEPV 119 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR------VLSLN 180 F+T EPKIDG ++RYEKG V A RGDG GEDV+A +R I IP Sbjct: 120 FYTAEPKIDGLSASLRYEKGVLVQGATRGDGRMGEDVTANLRTIADIPHRLRGGDPQGGG 179 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFF 239 P++IE+RGEVY+ F A N + G++ YANPRN A+G LR+++P R L FF Sbjct: 180 WPDVIEIRGEVYVELEAFAAFNAAALEAGQRTYANPRNFAAGSLRQIDPKISAQRPLRFF 239 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 + G TSE FA Q+E L K+R GF + G++ Y + + R L +D Sbjct: 240 AYAWGLTSEGFAATQWEALGKLRDWGFVTTAPPAERVQDAQGLLDIYAKFEVERPKLAFD 299 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKVD+ Q++LG +RSPRW I+ KF +QA T L ID+Q+GRTG +TPVARL Sbjct: 300 IDGVVYKVDDLEQQRRLGFVSRSPRWAIARKFPAQQARTILEAIDLQVGRTGAITPVARL 359 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 +PV +GG +TNATLHN D I +D+R+GD V+++RAG+VIP++V ++ Sbjct: 360 KPVTVGGVSVTNATLHNADEIAR-----------KDVRIGDTVILQRAGDVIPQIVGPVL 408 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ER A PF FP+ CP + + G RC+G AC Q++E L+HFVSR Sbjct: 409 EERPAGAVPFEFPTHCPCHLETPLVRESTAAGAETVVRRCSGEFACPFQRIEHLRHFVSR 468 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 AF+IEGLG++QL FF+ I+ PADIF L R + ++ G+G+ SV NL Sbjct: 469 RAFDIEGLGEKQLAAFFEE----GWIKEPADIFKL-ARDEAKLAELRERDGYGETSVANL 523 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS------YQNFAQEINNII-AHN 591 I RR I L+R I+ LG+R +G + LA+ + S +++ Sbjct: 524 VKGIEARRTIGLDRVIYGLGMRDIGETTSTVLARNFASPKGKGGFEDLQAAAERAAGQLP 583 Query: 592 NDDWLSLIRVPLVGDIIAQAIVE 614 +L L P VG +VE Sbjct: 584 GAVYLELAGAPGVGPKARDELVE 606 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 2/164 (1%) Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNI-IAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + + +LA+ Y + FAQ + +D+L L + +G + AQ+I Sbjct: 628 GHAVPKLSKPARVALAERYGDWDTFAQALAQAGQGAPGEDYLQLAAIDGIGPVAAQSIAR 687 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F+ N V L+ E+ K + + K +VFTG L+K+ R +A+ LG Sbjct: 688 FFAEAHNREKVANLIAELDIQPVAKPK-TDTAVAGKTIVFTGALEKMTRDEAKAQAEGLG 746 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A V++ +S+KTD+++ G GSKL+ A +LG+++M E+++L ++ Sbjct: 747 AKVASSVSKKTDLVVAGPGAGSKLKTATELGIQVMTEDEWLAMV 790 >gi|197301582|ref|ZP_03166655.1| hypothetical protein RUMLAC_00308 [Ruminococcus lactaris ATCC 29176] gi|197299312|gb|EDY33839.1| hypothetical protein RUMLAC_00308 [Ruminococcus lactaris ATCC 29176] Length = 662 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 182/711 (25%), Positives = 322/711 (45%), Gaps = 65/711 (9%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + ++ + L + ++ Y Q + I+ + EYD L + + ++ N P Sbjct: 12 KSKQQRMRELVELLNRARKAYEQDNTEIMSNYEYDRLYDELEELEKE----LGTKMANSP 67 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +G E+ L K H P LSL+K +E L++F+ + + K+ Sbjct: 68 TVNVGYEVVSGLPKERHERPMLSLDKTKEVERLKEFL------------GTKKAMISWKL 115 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I + Y+ G+ V A RG+G GE ++ + +P L + + +RGE IS Sbjct: 116 DGLTIVLTYQGGELVKAVTRGNGIEGEVITNNAKVFQNVP--LHIPYQGELVLRGEAVIS 173 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 DF A+N+++ V Y NPRN SG +R+LN R + FF L + E+ Sbjct: 174 YKDFEAINEKIEDV-DAKYKNPRNLCSGSVRQLNNEITAKRNVKFFAFTLVRAEEVDFHN 232 Query: 254 -QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 + +Q ++ GF V + DGLV D+ + Sbjct: 233 SRMYQMQWLKEQGFDVVEHHPVTAETIEEEVAW--FAKAIGKNEIPSDGLVLVYDDIAYG 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG A+ PR + K+A++ T LL+I+ RTG++ PVA EPV + G ++ A+ Sbjct: 291 QSLGTTAKFPRDSFAFKWADEIRETTLLEIEWSPSRTGLINPVAVFEPVELEGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 +HN ++ L+ + VGD + V +A +IP++ + + D P+ Sbjct: 351 VHNISIMEELE-----------LGVGDTIQVYKANMIIPQIAENLTRSGVKD-----IPT 394 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C + +T L C A+ ++ FVSRDA NIEGL + L+ Sbjct: 395 VCPVCGGTTKISMENETKTL-----FCTNPECQAKHVKAFSLFVSRDAMNIEGLSEATLE 449 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F ++ D+F L R ++ +I+++ GFG+ S L +I R +L R Sbjct: 450 KFILH----GYVKDFTDLFHLDRYEE----EIKSMDGFGEKSYQKLLRNIENARKTTLAR 501 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 I+SLGI ++G+ A+ + K + ++ L+ + +G I+A+ Sbjct: 502 LIYSLGIPNIGSANAKVICKAFG---------DDPKRAEEATEEELVEIQGIGGIMAKTY 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVT 671 VE++ +P++ LL EV ++ S + V TG+++ R + + + Sbjct: 553 VEYFADPKHREIYRRLLDEVELQKEVVTED-SQKFSGINFVITGSVEHFANRAEVKAEIE 611 Query: 672 QLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G V+ ++ KT +I D + SK +KA++LGV I++EE + +L+Q Sbjct: 612 KRGGKVTGSVTSKTGYLINNDVNSTSSKNKKARELGVPIISEETLIGMLEQ 662 >gi|308811310|ref|XP_003082963.1| COG0272: NAD-dependent DNA ligase (ISS) [Ostreococcus tauri] gi|116054841|emb|CAL56918.1| COG0272: NAD-dependent DNA ligase (ISS) [Ostreococcus tauri] Length = 808 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 236/793 (29%), Positives = 363/793 (45%), Gaps = 115/793 (14%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 ++L++++AR+EL L +E+++HD YY + +I DSEYD+L+ R AI P AR Sbjct: 61 APDSLTVDEARRELERLNEELAHHDRSYYNDGEGVISDSEYDSLRARYLAIERLHPSAAR 120 Query: 68 SEDPNGPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 + G ++G + L K+ H+ P SL ++I + F+ R+ + + Sbjct: 121 AL---GASARVGATPDDQSGLEKIAHATPMRSLGNAFDIAQVEAFVNRVEKAHGEI---- 173 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 G ++RYE G R D P L P ++ Sbjct: 174 ----------GVDASLRYENG-----FSRCD--------ETFSQARVRPTRLKAPYPAVL 210 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245 E+RGEV++++ DF +N E A G + + N RNAA+G +R LN D L F +G G Sbjct: 211 EIRGEVHVAEEDFRRVNAERAATGVRVFKNARNAAAGAMRLLNAEDNQMPLRFLAYGWGA 270 Query: 246 TSEIFAKGQYEMLQKMR-------CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 E A + + GF + +T G++ Y ++ R ++PY+ Sbjct: 271 AGETDADANAPWVTQSEFLSSFLPSQGFDAVPVLGVTSTVEGLMETYEALEIARPSMPYE 330 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV+ +LQ+ LG AR PRW I+HKF A T L I+IQ+GRTG LTPV L Sbjct: 331 IDGVVYKVNSVALQQTLGADARQPRWAIAHKFTAMSAVTTLRAIEIQVGRTGALTPVGLL 390 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 +PV+IGGA I ATLHN D I G + ++VG +V+V+RAG+VIP+VV + Sbjct: 391 DPVDIGGACIQRATLHNFDEI-----------GRKRLKVGAQVMVERAGDVIPRVVSLAG 439 Query: 419 NERHPDA---------QPFSFPSFCPICQ-SRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 + A + PS CP C S V L+ + RCTGGL C +Q Sbjct: 440 EDLAEAAAYPEDALPLPEWLPPSKCPDCGASVVRAPLSASKNAMGTIVRCTGGLKCPSQS 499 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQR-------RQQTST 521 +ERL HF SRDA +I GL + L+ + ++ PADIFTL+R + Sbjct: 500 MERLLHFCSRDALDIRGLARATLETLHRE----GVVKTPADIFTLERRFGPDSGETVPTW 555 Query: 522 TKIENI-----------LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 + + G +V +RR + L RFI++LGI ++GA A+ L Sbjct: 556 WRYTGVKNSKGEVKEGSDGLKASAVKLFQAIELRRRGVPLHRFIYALGIPNIGAHTAKVL 615 Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWL--SLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 A +Y+S F + + +L + VG ++AQ++V+F+ P N V + Sbjct: 616 ATHYVSLDAFRKASMAAAKGGSTSLAYGALTHIDGVGPVLAQSLVDFWGEPANASIVSEI 675 Query: 629 LKEVSPSIGRHEKNVSSE-----------------------------IENKKLVFTGTLQ 659 + + E + S + K++FTGT+ Sbjct: 676 IANGVVVLDAAESSKPSSTRQPPAAPLSSATSAASTKPAEYSAPGANLTGAKILFTGTVD 735 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 R + A V + LS KT ++ G G +KL KA LGV I++ F+ L Sbjct: 736 GYPRETVHRLIESASAEVVSSLSSKTTCVLAGSGAGPAKLAKASALGVPIIDAADFILAL 795 Query: 719 QQYN-TTLRIHDD 730 + ++ D Sbjct: 796 DRGEPVSIPPRQD 808 >gi|119953337|ref|YP_945546.1| NAD-dependent DNA ligase LigA [Borrelia turicatae 91E135] gi|254781266|sp|A1QZY4|DNLJ_BORT9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|119862108|gb|AAX17876.1| NAD-dependent DNA ligase [Borrelia turicatae 91E135] Length = 676 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 194/712 (27%), Positives = 342/712 (48%), Gaps = 55/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 I+ E+ L I + YY S P + D YD R + +P+ + Sbjct: 10 IKDIEDEILCLRDNIRKWNKEYYVDSSPSVSDLTYDKALLRLQDLESKYPEYKTL---DS 66 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K G ++ + +VTHS P LSL+K ++I++L +I ++ + ++EPK Sbjct: 67 PTLKFGSDLLNNFEEVTHSFPILSLDKAYDIKELLLWIEKMVLEGSSLGSYTG-ISVEPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I + Y+ G A RGDG G DV+ +R I +P + + + +RGE+YI Sbjct: 126 IDGCSIVLYYKDGILQKALTRGDGRVGNDVTENVRTIKNVPLSIDEKVE--LVLRGEIYI 183 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 +K +FL +N + + PY N RN ASGILRR+N ++ + S Sbjct: 184 TKENFLKINHTL----KNPYLNARNLASGILRRINSREVASFPLDIFVYDILYSSFGLST 239 Query: 254 QYEMLQKMRCLGFPVNNGVRQA--NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 ++ K++ GF +N + I ++ +++ R++L Y+IDG+V KVD F L Sbjct: 240 NHDAFDKLKKFGFKINPFCKFFGGKNLEEITNHVKKIEMQRNSLEYEIDGVVLKVDSFIL 299 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 + LG + P+W +++KF ++++DI +Q+GR+G +TPVA +E V + GA ITNA Sbjct: 300 RDILGYTSHHPKWSVAYKFESCTGVSKIVDIVVQVGRSGKITPVAHVEKVFVAGAFITNA 359 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHN+DYI + + VGD V + R G+VIP V ++ F Sbjct: 360 SLHNQDYIDSI-----------GLNVGDVVAISRRGDVIPAVELVVEKLSIGS---FKIS 405 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 S CP C+ ++++ + H C + +E++K+F S+ NI GL + + Sbjct: 406 SNCPSCKMALIKEGS---------HLFCVNKHCPYRIIEQIKYFCSKKCMNIVGLSGKTI 456 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 +F F+ + I +++T + ++ N+ GF + NL SI+ + Sbjct: 457 EFLFEMK----FISSEIELYT------FNFDRLINLRGFDLKRIDNLKRSISDSKGRPFR 506 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + +GI+ +GA L + N I+ + + L+++ +G+ IA Sbjct: 507 KLLLGMGIKELGANTILVLIN---NNLNSFDIISTLCKNKEAALAKLLKIKGIGEKIALN 563 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQE 668 I+E + + + KE+ + + N S + KK TG+ + R E Sbjct: 564 IIEAFNDKIILDKF-NFFKELGFKLEEYNTNYVVDDSFLFGKKFCITGSFEGHSRDVLIE 622 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI---MNEEQFLFL 717 +T+ GA+ + ++++ D ++VG+ PG KL+KA LG+K + + F+ L Sbjct: 623 KITKKGAIFNRAVTKRLDFLLVGEKPGLKLQKANNLGIKTFGLFDIKDFVDL 674 >gi|311900456|dbj|BAJ32864.1| putative DNA ligase [Kitasatospora setae KM-6054] Length = 718 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 197/733 (26%), Positives = 318/733 (43%), Gaps = 99/733 (13%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY + D EYDAL R A A P+ + + P K+ G V HS+P Sbjct: 34 YYGDGTTTLGDDEYDALVRAIAAYEEAHPEELLA---DSPTGKVAGGAAEG--DVPHSVP 88 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL+ +++ E+L + + R + + +EPK+DG I RYE G R Sbjct: 89 MLSLDNVFSGEELADWAASLERRLGRAPAG---WCVEPKLDGLAIAARYEGGALRRVLTR 145 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 G+G +GED++ + +P VL+ + +E+RGEV ++ F N+ A G P+A Sbjct: 146 GNGLAGEDITHTAGDVLGLPAVLAEPV--DVELRGEVLLTHAQFERANEIRTAHGAVPFA 203 Query: 215 NPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI-----------------FAKGQYEM 257 N RN A+G LR + F +G A + Sbjct: 204 NARNGAAGTLRAKDRPYRIELTFFAYDAVGLDENPGEKPGETPDETPGQAPSRALDHSAL 263 Query: 258 LQKMRCLGFPVNNGVR----QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 L+++ LG + + + ++ ++R LP+ IDG+V K D + Q+ Sbjct: 264 LERLAALGANTAASTAAAPLRCESIEEVQRRIEQITALRPQLPFGIDGVVVKADAAADQE 323 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 + G +R+PRW ++ K A + TRLL+++ +GRTGI+ P A LEPV I G +T ATL Sbjct: 324 RAGSGSRAPRWAVARKLAAEHKVTRLLEVEWAVGRTGIIAPRAVLEPVVIDGVTVTYATL 383 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN I+ R + +GDRV V RAG+VIP+V +V ER + +P FP+ Sbjct: 384 HNPADIER-----------RGLMLGDRVFVYRAGDVIPRVEAPLVEERTGEERPIVFPAA 432 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C RC G C A + + RD +IEGLG + Sbjct: 433 CPRC--------GEAIDSSEQRWRCVRGRNCQAV--ASIIYAAGRDQLDIEGLGSTRAVQ 482 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + A +R AD+FTL R Q + G+ S NL +I R L R Sbjct: 483 LVE----AGLVRDLADVFTLTREQLLG------LERMGETSTDNLLAAIATARTRPLGRV 532 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + +LG+R G ++R +A ++ S D +L V +G A+ +V Sbjct: 533 LCALGVRGTGRSMSRRIAAHFGSMAAIRAA----------DAETLAAVEGIGPEKARLVV 582 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEK---------------------NVSSEIENKKL 652 ++ L + + + + + + + Sbjct: 583 SELAELT--TLLDRLAELGVGTQVTAPQRPTAPKPAAEETGEAAEDADAPAAGPLSGEAV 640 Query: 653 VFTGTLQK----IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 V TG++ + R++ E V + G S+ +S++T +++ G+ GSK KA++LG++I Sbjct: 641 VVTGSMTGALAALTRNEMNELVERAGGKASSAVSKRTTLLVAGEKAGSKRAKAEELGIRI 700 Query: 709 MNEEQFLFLLQQY 721 + E F LL + Sbjct: 701 LTPEDFATLLADH 713 >gi|182413875|ref|YP_001818941.1| DNA ligase, NAD-dependent [Opitutus terrae PB90-1] gi|254778152|sp|B1ZMR3|DNLJ2_OPITP RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 2 gi|177841089|gb|ACB75341.1| DNA ligase, NAD-dependent [Opitutus terrae PB90-1] Length = 708 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 209/706 (29%), Positives = 330/706 (46%), Gaps = 49/706 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 ++ + L L EI+ HDD Y++ ++P I D++YDALK+ + F + L Sbjct: 42 ESLRRLELLRVEIARHDDLYFRKAQPEISDADYDALKQELRELESRFGRRVPRDPA--AL 99 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +G + K H + LSLEK +R F + R K I + +EPK D Sbjct: 100 RDMGDDRVSGFPKARHRMRMLSLEKTTTESGVRAFDQALRRLV--KPPAEIAYVVEPKFD 157 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYIS 194 G I+ YE+G+ V RG+G G+DV+A I T+P L+ P ++EVRGEV+++ Sbjct: 158 GLAISATYEEGRLVRLVTRGNGEEGDDVTAAAGRIRTLPPRLAGAAWPRVVEVRGEVFLT 217 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRR---LNPTDITRYLNFFVHGLGKTSEIFA 251 +F +N GR +++PRN A G L+ + + FF G Sbjct: 218 FAEFERINRGRRENGRPTFSSPRNLAVGTLKSLEPEDREVRQLDVVFFGLGAIDGHAA-P 276 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q ++L+ + G P R+ ++ E+ RS L + IDG V K+D+ Sbjct: 277 ASQTQLLEWIAQWGLPSVEDARRVDSIDDAWRAVQELGGRRSHLAFPIDGAVIKLDDAVG 336 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q G +PRW I+ K+A + TR+ + +Q+GRTG++TPVA LEPV + GA IT A Sbjct: 337 QTAAGVSEVAPRWAIAFKYAPARVGTRVRGVALQVGRTGVITPVAELEPVALAGARITRA 396 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN ++ D+RVGD V ++R GE+IP VV + +R + PF FP Sbjct: 397 TLHNASEMER-----------SDLRVGDFVWIERMGEIIPAVVAVDTAQRGTVSAPFVFP 445 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + +VR L+ A RCT C A+Q+ +++H+VS + I GLG + Sbjct: 446 RDCPGCGALLVRALD------DANWRCTND-DCPARQVRKVEHYVSDEGVGIRGLGAASV 498 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + +S+ +R D++TL + T+ T + D+I + R L Sbjct: 499 EALVRSQR----VREIPDLYTLTAAEVTAHT------RLSAAQAARVVDAIQRSRKAPLR 548 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R I LG+ +G A +L + FA + L +V + +A Sbjct: 549 RVIAGLGLPGIGPAGANALGARFADLPQFAAARES----------DLQQVEGLRPESVRA 598 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 + R + L + + + K++VFTGTL + R +A E V Sbjct: 599 LATALSAERTQQLLARLAAAGV--GAQSATADAGTLAGKEVVFTGTLPTLSRRRATELVE 656 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + G V+ ++ T ++ G NP SKL +A LGV ++ E + L L Sbjct: 657 EAGGRVADRVTAATWRLVAGRNPASKLHQATALGVPVIEEAELLRL 702 >gi|54020343|ref|YP_115627.1| DNA ligase [Mycoplasma hyopneumoniae 232] gi|81378764|sp|Q601T8|DNLJ_MYCH2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|53987516|gb|AAV27717.1| DNA ligase [Mycoplasma hyopneumoniae 232] Length = 692 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 211/736 (28%), Positives = 345/736 (46%), Gaps = 74/736 (10%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-G 73 Q R ++ L ++I + YYQ P++ D YD R + + L E+ N Sbjct: 5 SQIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQS 64 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+G ++ KV HS P LSL K ++ E+L K+ + + ++ F +EPK Sbjct: 65 PSQKVGSKITSKFEKVAHSSPMLSLNKAYSNEELEKWAKKAREILK-----TVTFFVEPK 119 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG +++ Y+ G + A RGDG GE+V I +N E +EVRGE+YI Sbjct: 120 IDGIALSLFYQNGNLIKALTRGDGVFGENVLVNALKINDEFIPKKINYLEDLEVRGEIYI 179 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD---------------ITRYLNF 238 + F +L + K + NPRNAASGILRR RYL Sbjct: 180 DNSTFASLQ-----LETKKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFRYLKS 234 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 F + L + Q++ +R LGF VN ++ + + ++ + +K R L Y+ Sbjct: 235 FFYTLVNPEKHKINSQFDSTNFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDFLNYN 294 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+V KV+EFS+ ++LG ++ P I+ KF + A T+LL I IGRTG +T A++ Sbjct: 295 IDGVVVKVNEFSIYEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTYNAKI 354 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV + G+ I++A L N YI+ L + + V +K+AGE+IP+++ + Sbjct: 355 EPVTLAGSKISSAILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQIIGSVH 403 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 N + FS CP C S +V + + C L+++ HF S+ Sbjct: 404 NYPKTN---FSIVKNCPKCNSELVNSESGLD-------QFCQNQFCPEIILQKIVHFCSK 453 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR----------QQTSTTKIENIL 528 +A NIE L +++++ F + I DIF L+ + + TK Sbjct: 454 NALNIESLAQKRIEKFLEK----GLISSACDIFYLKDKLELIYERLSNKNQLLTKQNASQ 509 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 S+ L + + + +NI R IF LGIR+VG + A+ L++Y + Sbjct: 510 SMQIKSIMKLLNEVERAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNLSELR------- 562 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648 N D+ L G +I +++++++ N +N + L N S+ Sbjct: 563 ---NLDFNLLKNQHDFGPVIIESLIDYFNNQKNSEQLNCLETVGFNFKTTFLTNQSNSWA 619 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 +G L K R + + + GA L++KTD +++G + GSK+EKA++ G+KI Sbjct: 620 --SFAISGKLSK-PRDEYVRIIEESGASFHESLTKKTDFLLLGQSAGSKIEKAKKAGIKI 676 Query: 709 MNEEQFLFLLQQYNTT 724 +NE QF L++ T Sbjct: 677 INEVQFFDLIKNSKKT 692 >gi|56807783|ref|ZP_00365637.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Streptococcus pyogenes M49 591] Length = 571 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 191/617 (30%), Positives = 314/617 (50%), Gaps = 48/617 (7%) Query: 102 WNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGE 161 + E+L F R+ + + + E KIDG I++ YE G A RGDG+ GE Sbjct: 2 FFREELDAFDKRVK-----AEFPNATYLAELKIDGLSISLSYENGFLQVGATRGDGNIGE 56 Query: 162 DVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAAS 221 +++ I+ I IP LS + I VRGE Y+S+ F A+N+ G +ANPRNAA+ Sbjct: 57 NITENIKKIKDIPHQLSEPL--TITVRGEAYMSRQSFKAINEARQENGETEFANPRNAAA 114 Query: 222 GILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI 281 G LR+L+ + + S Q E+L ++ LGF VN + ++ I Sbjct: 115 GTLRQLDTAVV-AKRELATFLYQEASPTARNQQNEVLAELADLGFSVNPYYQLTSSMDEI 173 Query: 282 VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341 + +++ R L YDIDG+V KV+ ++Q++LG ++PRW I++KF ++ +L Sbjct: 174 WDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGFTVKAPRWAIAYKFPAEEKEAEILS 233 Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401 +D +GRTG++TP A L PV + G ++ ATLHN DYI +DIR+GD V Sbjct: 234 VDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------AEKDIRIGDTV 282 Query: 402 LVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461 +V +AG++IP V+++++++R+ P CP C S +V + A RC Sbjct: 283 IVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSCGSELVHFEDE------VALRCINP 335 Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521 L C + L+HF SRDA NI GLG ++ F A + ADI+ L + Sbjct: 336 L-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF----LAGFVHDVADIYQLTKENFM-- 388 Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 + G + S L +I ++ S E+ +F LGIRH+G++++R + + Y Sbjct: 389 ----QLDGIKEKSADKLLAAIEASKSNSAEKLLFGLGIRHIGSKVSRLILEVYGDISALL 444 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR-HE 640 + R+ +G IAQ++ ++++ V+ L + Sbjct: 445 TAKE----------EEIARIDGLGSTIAQSLTQYFEQKTAAILVDELKTAGVNMHYSGQK 494 Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700 N + + +V TG L ++ R++A++ + LGA V+ +S+KTD++I G + GSKLEK Sbjct: 495 VNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAKVTGSVSKKTDLVIAGSDAGSKLEK 554 Query: 701 AQQLGVKIMNEEQFLFL 717 A+ LG++I +E+ L Sbjct: 555 AKSLGIRIEDEDWLRQL 571 >gi|228982993|ref|ZP_04143252.1| DNA ligase, NAD-dependent [Bacillus thuringiensis Bt407] gi|228777176|gb|EEM25484.1| DNA ligase, NAD-dependent [Bacillus thuringiensis Bt407] Length = 669 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 206/720 (28%), Positives = 339/720 (47%), Gaps = 72/720 (10%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 +++ L +E+ HD Y PII DSEYD + ++ P+ A D N P Sbjct: 2 IEQKIKQLREEVMKHDLLY-DEGTPIITDSEYDQMYYELVSLEEKHPEFA---DENSPTK 57 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +I + SL K+ HS P LS +K ED+ KF + + K DG Sbjct: 58 RIYSVVVDSLKKIKHSTPMLSQDKGHTEEDIVKFANK----------SDDEIIAGDKEDG 107 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I ++Y G + A+ RGDG+ GEDV+ +R I +P ++ +EVR E I + Sbjct: 108 LTIVLKYNNGIYYEASTRGDGYIGEDVTHTVRTITNLP--KKISFKGYLEVRAESVIPFS 165 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQY 255 +F +N Y +PRN SG +R LN L+ L K I + Sbjct: 166 EFERINV------DGKYKSPRNLVSGSVRTLNANIAKERGLSIIAFDLVKAEGITFEKDT 219 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM----KSIRSTLPYDIDGLVYKVDEFSL 311 E L+ ++ GF V NT GI K +R T+P+ IDGLV K + ++ Sbjct: 220 EQLEFLKEQGFNVVPYKVFKNTPEGIKELIQYCLTYNKEVRPTIPHMIDGLVLKFNNLAV 279 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 ++ LG ++ PRW + KF A+T+LL+I +G++G +TP EPV I G I A Sbjct: 280 RESLGYTSKFPRWGFAFKFDSLDATTKLLNIVETVGKSGQITPNGIFEPVEIDGVTIQKA 339 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +L N D IK RDIR+GD ++V RA +VIP++V + R + P Sbjct: 340 SLANYDNIK-----------ERDIRIGDTIVVARANDVIPQIVSAVTELRDGTEKEILPP 388 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+C + H CSAQQ LKHFVSR+A NI+GLG + + Sbjct: 389 TCCPVC-------KGEVVKEEDNVHYFCINSTCSAQQERILKHFVSRNAMNIDGLGAKTV 441 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F++ + +DI+TL+ + K+ + GFG+ + + I + +++ L Sbjct: 442 ETFYEK----GILSSISDIYTLKD----NLDKLSVLRGFGEKKIQKMLSGIEESKHVPLS 493 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 +F+++L I +VG+ + +AK + + ++ + + + L+++ +G+ +A + Sbjct: 494 KFLYALAIPNVGSSTGKDIAKKFKTMRHLIELSKDPVVLKT----ELMKIDGIGETVASS 549 Query: 612 IVEFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +V +++ NI +E L + E S EIE K V TG+L K R+ ++ + Sbjct: 550 MVSYFEESHNIELIEFLYSIGFTMMEEVEEIIASEEIEGKIFVITGSLSK-PRNDIKKEI 608 Query: 671 TQLGAVVSAILSRKTDIIIVG------------DNPGSKLEKAQQLGVKIMNEEQ-FLFL 717 G VS +S KT+ +++G + SK + A + I++EE+ F + Sbjct: 609 EARGGKVSGSVSAKTNFLVLGGYNHVTGELPEKETNSSKYKNAVKFECPIISEEELFAKM 668 >gi|326201860|ref|ZP_08191730.1| DNA ligase, NAD-dependent [Clostridium papyrosolvens DSM 2782] gi|325987655|gb|EGD48481.1| DNA ligase, NAD-dependent [Clostridium papyrosolvens DSM 2782] Length = 657 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 175/711 (24%), Positives = 308/711 (43%), Gaps = 65/711 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + + + ++ YYQ + I+ + EYD L + N Sbjct: 1 MADKIQLMKDKIEILNKAAKAYYQENTEIMPNIEYDKLYDELLELEKE----TGVVLSNS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +G E+ +L K H P LSL+K + L+++I + L K Sbjct: 57 PSIHVGYELLSNLPKERHEKPMLSLDKTKEVGALKEWI------------GTQKGILSWK 104 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG I + Y+ G V A RG G GE ++ R +P +++ + + +RGE I Sbjct: 105 LDGLTIVLTYQDGHLVKAVTRGTGEVGEVITNNARVFRNLP--VTIAYKDTLILRGEAII 162 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFA 251 +DF+ +N+E+ V Y NPRN SG +R+LN F + + Sbjct: 163 RYSDFIKINNEISDVD-AKYKNPRNLCSGSVRQLNNKVTSERNVYFFAFSLVKADNVELE 221 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + + ++ GF + + + DGLV D + Sbjct: 222 NSRASQMNWLKNQGFDIVEFKEVTSNDIEETVQWF--SQNIEANDLPSDGLVLTFDNIAY 279 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 + LG A+ PR I+ K+ ++ T LL+I+ RTG++ P+A EPV + G ++ A Sbjct: 280 GESLGSTAKFPRDSIAFKWRDEIKETTLLEIEWSASRTGLINPIAIFEPVELEGTTVSRA 339 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 ++HN ++GL+ + +GD + V +A +IP++ + + P Sbjct: 340 SIHNLSIMEGLE-----------LGIGDTIGVYKANMIIPQISENLTRSGMA-----PIP 383 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C + + C A+Q++ HFVSRDA NIEGL + L Sbjct: 384 EECPVCSGKT-----EIKQENGVKTLYCVNNECLAKQIKSFTHFVSRDAMNIEGLSEATL 438 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + I+ AD+F ++ + +I + G G+ S L SINK R + Sbjct: 439 EKLIAK----GLIKELADLFHIEMYKN----EIIEMEGLGEKSFNKLIASINKARKTTAI 490 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R ++SLGI +VG A+ + KY+ + N D+ LI++ +GDI+A++ Sbjct: 491 RLLYSLGIPNVGLSNAKLICKYFK---------YDWNNIENADFTELIQIGGIGDIMAES 541 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670 + F+ + + V +LKE+ EN V TG+++ + R + + + Sbjct: 542 FISFFADEKKRIIVHDVLKELELE-EVQVSQSEQIFENVNFVITGSVEMFKNRDELKGVI 600 Query: 671 TQLGAVVSAILSRKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + G V+ ++ KT+ +I DN SK +KA++L + I+ E QF+ + Sbjct: 601 EEKGGKVTGSVTSKTNYLINNDNLSNSSKNKKAKELNISIITEAQFVEWIN 651 >gi|260588405|ref|ZP_05854318.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583] gi|260541279|gb|EEX21848.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583] Length = 644 Score = 379 bits (973), Expect = e-102, Method: Composition-based stats. Identities = 173/702 (24%), Positives = 310/702 (44%), Gaps = 63/702 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E+ ++ +++ + YYQ S+ I+ + +YD L + + + P + Sbjct: 3 EMRAIIEQLKAANVAYYQESREIMSNYDYDKLYDKLVDMEKE----TGVIYSDSPTQSVA 58 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + L K H LSL+K ++E L+ +I + L K+DG + Sbjct: 59 NDFLDFLPKEKHEKKMLSLDKTKSVETLKSWI------------SDKDGILSWKLDGLTV 106 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 + Y+ G+ A RG+G +GE ++ + +P L + E + +RGE IS DF Sbjct: 107 VLTYDNGELQKAVTRGNGTTGEIITQNVSRCKGVP--LKIPYKEKLILRGEAVISYTDFD 164 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259 +N ++ VG Y NPRN ASG +R L+ ++ ++ N V S K + Sbjct: 165 RINSQIEDVG-ARYKNPRNLASGSIRLLDASE-SQKRNVQVIIFRLISGSKFKTMDKQFN 222 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 + +GF V + + K + DGLV + LG + Sbjct: 223 WLSEIGFNVVEHYPVNKDNIEECVKFFKRKIENN--DIPTDGLVVSYNNTDYGNSLGNTS 280 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 + R + K+ ++ A T L I+ RTG+L PVA EPV + G ++ A++HN I Sbjct: 281 KFERHSFAFKWKDEVAETTLKKIEWSPSRTGLLNPVAIFEPVELEGTTVSRASVHNISII 340 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439 K L + +GD + V ++ +IP++V+ + D P CPIC Sbjct: 341 KEL-----------KLGIGDTIKVIKSNMIIPQIVENSTKSNNLD-----IPKQCPICGG 384 Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 + T L+ C + + + HF RDA NIEG+ + +DF K Sbjct: 385 DTNIICSNDTEVLM-----CMNTHCPEKLIGKFVHFCERDAMNIEGMSEATVDFLVKK-- 437 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559 ++ D + L + + +I GFG SV L+ SI K + +S ER +++LGI Sbjct: 438 --GWLKTFKDFYNLSQYKA----TWMSIPGFGKKSVEKLFLSIEKSKQVSPERLLYALGI 491 Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 +G +R + ++ ++ + + + ++ GD++ ++I ++++ Sbjct: 492 PKIGRSQSREIFNHFDTWDDLIKSMKEKF--------DFSKLDGFGDVLNKSIYDWFKED 543 Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVS 678 +E L+K + + + S + NK V TG+L K R+ + + G V+ Sbjct: 544 YKSEEIEQLVKILVFEEKIKTEELLS-LTNKTFVITGSLNKFSNRNDLKSTIETHGGKVT 602 Query: 679 AILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++ KT +I D + SK +KA++LG+ I++EE+FL LL Sbjct: 603 GSVTSKTHYLINNDTTSNSSKNKKAKELGIPIISEEEFLTLL 644 >gi|330830678|ref|YP_004393630.1| NAD-dependent DNA ligase LigA [Aeromonas veronii B565] gi|328805814|gb|AEB51013.1| NAD-dependent DNA ligase LigA [Aeromonas veronii B565] Length = 787 Score = 379 bits (972), Expect = e-102, Method: Composition-based stats. Identities = 201/624 (32%), Positives = 324/624 (51%), Gaps = 43/624 (6%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 L + ++ + YY P + D+EYD L R A+ P+L P P ++G Sbjct: 7 RHRQLCELLTEYGHQYYVLDNPTVPDAEYDRLMRELIALEADHPELK---TPASPSVRVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G+ + +V H IP LSL+ +++ E+L+ F R+ ++ D F EPK+DG + Sbjct: 64 GQPLTAFSQVRHEIPMLSLDNVFSSEELQAFEQRMSDRLKR--DVRFTFCCEPKLDGLAV 121 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDF 198 ++ Y G+ V AA RGDG +GE+++ +R I IP L + P+ +EVRGEV++ K F Sbjct: 122 SLLYVNGQLVQAATRGDGATGEEITENVRTIKAIPLALRGSGWPDRLEVRGEVFMPKAGF 181 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 A+N + +A G K + NPRNAA+G LR+L+ +R L+F+ +G+G E+ + Sbjct: 182 EAMNAKALAAGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYGVGVGGELLGDSHFGR 241 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L +++ G P++ V+ G ++++++ + R LPY+IDG+VYKVD LQ++LG Sbjct: 242 LNQLKAWGLPLSPEVKLKEGAAGCQAFHDDILARRGELPYEIDGVVYKVDAIPLQEELGF 301 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 AR+PRW +HKF ++ T L +++ Q+GRTG +TPVA+L+PV +GG ++NATLHN D Sbjct: 302 VARAPRWATAHKFPAQEEMTLLENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNATLHNAD 361 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ L + VGD V+V+RAG+VIP++V ++ +R DA+ FP+ CP+C Sbjct: 362 EIERL-----------GVMVGDTVIVRRAGDVIPQIVAVVEAQRPSDARAILFPTECPVC 410 Query: 438 QSRVVRDLNPKT------GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 S +V++ K++A +CTGGL C AQ E LKHFVSR+A +IEG+G + + Sbjct: 411 GSDIVQEKKIVQQKTKTLEKILATRKCTGGLNCLAQVKESLKHFVSRNAVDIEGVGDKVI 470 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + ++ PAD+F L + + Sbjct: 471 EQLVD----GGLVKHPADLFRLSVDDFLKLDGFAEVSAKNAFDAIQAKIGTTSSID---- 522 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 F+F LGI VG +A L N I + ++ +G I Sbjct: 523 -FLFGLGIPSVGQVVAERLIVELGCLDNIISAPRGI----------ISQINGIGLDIDAE 571 Query: 612 IVEFYQNPRNICAVEALLKEVSPS 635 I +++ +V L + Sbjct: 572 ISDYFSAASVSDSVMELADVMGVE 595 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 31/86 (36%), Positives = 48/86 (55%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696 + S I K V TG+ + R K + +LG +S+ TD++I+GD GS Sbjct: 700 SEPAEKSDSFIAGKSFVITGSFTFMSRDKLNSKLKELGGESKTSVSKNTDMLIMGDKAGS 759 Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYN 722 KL+KA +LG+KI+NE++ LL+ N Sbjct: 760 KLKKATELGIKIINEDELRSLLESEN 785 >gi|166215831|sp|Q4AA72|DNLJ_MYCHJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|144227540|gb|AAZ44349.2| DNA ligase [Mycoplasma hyopneumoniae J] Length = 692 Score = 379 bits (972), Expect = e-102, Method: Composition-based stats. Identities = 211/736 (28%), Positives = 346/736 (47%), Gaps = 74/736 (10%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-G 73 Q R ++ L ++I + YYQ P++ D YD R + + L E+ N Sbjct: 5 SQIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQS 64 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+G ++ KV HS P LSL K ++ E+L K+ + + ++ F +EPK Sbjct: 65 PSQKVGSKITSKFEKVAHSSPMLSLNKAYSNEELEKWAKKASEILK-----TVTFFVEPK 119 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG +++ Y+ G + A RGDG GE+V I +N E +EVRGE+YI Sbjct: 120 IDGIALSLFYQNGNLIKALTRGDGVFGENVLVNALKINDEFIPKKINYLEDLEVRGEIYI 179 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD---------------ITRYLNF 238 + F +L + K + NPRNAASGILRR RYL Sbjct: 180 DNSTFASLQ-----LETKKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFRYLKS 234 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 F + L + Q++ + +R LGF VN ++ + + ++ + +K R L Y+ Sbjct: 235 FFYTLVNPEKHKINSQFDSINFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDFLNYN 294 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+V KV+EFS+ ++LG ++ P I+ KF + A T+LL I IGRTG +T A++ Sbjct: 295 IDGVVVKVNEFSIYEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTYNAKI 354 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV + G+ I++A L N YI+ L + + V +K+AGE+IP+++ + Sbjct: 355 EPVTLAGSKISSAILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQIIGSVH 403 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 N + FS CP C S +V + + C L+++ HF S+ Sbjct: 404 NYPKTN---FSIVKNCPKCNSELVNSESGLD-------QFCQNQFCPEIILQKIVHFCSK 453 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR----------QQTSTTKIENIL 528 +A NIE L +++++ F + I DIF L+ + + TK Sbjct: 454 NALNIESLAQKRIEKFLEK----GLISSACDIFYLKDKLELIYERLSNKNQLLTKQNASQ 509 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 S+ L + + + +NI R IF LGIR+VG + A+ L++Y + Sbjct: 510 SMQIKSIMKLLNEVERAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNLSELR------- 562 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648 N D+ L G +I +++++++ N +N + L N S+ Sbjct: 563 ---NLDFNLLKNQHDFGPVIIESLIDYFNNQKNSEQLNCLETVGFNFKTTFLTNQSNSWA 619 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 +G L K R + + + GA L++KTD +++G + GSK+EKA++ G+KI Sbjct: 620 --SFAISGKLSK-PRDEYVRIIEESGASFHESLTKKTDFLLLGQSAGSKIEKAKKAGIKI 676 Query: 709 MNEEQFLFLLQQYNTT 724 +NE QF L++ T Sbjct: 677 INEVQFFDLIKNSKKT 692 >gi|71893614|ref|YP_279060.1| DNA ligase [Mycoplasma hyopneumoniae J] Length = 693 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 211/736 (28%), Positives = 346/736 (47%), Gaps = 74/736 (10%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-G 73 Q R ++ L ++I + YYQ P++ D YD R + + L E+ N Sbjct: 6 SQIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQS 65 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+G ++ KV HS P LSL K ++ E+L K+ + + ++ F +EPK Sbjct: 66 PSQKVGSKITSKFEKVAHSSPMLSLNKAYSNEELEKWAKKASEILK-----TVTFFVEPK 120 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG +++ Y+ G + A RGDG GE+V I +N E +EVRGE+YI Sbjct: 121 IDGIALSLFYQNGNLIKALTRGDGVFGENVLVNALKINDEFIPKKINYLEDLEVRGEIYI 180 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD---------------ITRYLNF 238 + F +L + K + NPRNAASGILRR RYL Sbjct: 181 DNSTFASLQ-----LETKKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFRYLKS 235 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 F + L + Q++ + +R LGF VN ++ + + ++ + +K R L Y+ Sbjct: 236 FFYTLVNPEKHKINSQFDSINFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDFLNYN 295 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+V KV+EFS+ ++LG ++ P I+ KF + A T+LL I IGRTG +T A++ Sbjct: 296 IDGVVVKVNEFSIYEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTYNAKI 355 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV + G+ I++A L N YI+ L + + V +K+AGE+IP+++ + Sbjct: 356 EPVTLAGSKISSAILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQIIGSVH 404 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 N + FS CP C S +V + + C L+++ HF S+ Sbjct: 405 NYPKTN---FSIVKNCPKCNSELVNSESGLD-------QFCQNQFCPEIILQKIVHFCSK 454 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR----------QQTSTTKIENIL 528 +A NIE L +++++ F + I DIF L+ + + TK Sbjct: 455 NALNIESLAQKRIEKFLEK----GLISSACDIFYLKDKLELIYERLSNKNQLLTKQNASQ 510 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 S+ L + + + +NI R IF LGIR+VG + A+ L++Y + Sbjct: 511 SMQIKSIMKLLNEVERAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNLSELR------- 563 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648 N D+ L G +I +++++++ N +N + L N S+ Sbjct: 564 ---NLDFNLLKNQHDFGPVIIESLIDYFNNQKNSEQLNCLETVGFNFKTTFLTNQSNSWA 620 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 +G L K R + + + GA L++KTD +++G + GSK+EKA++ G+KI Sbjct: 621 --SFAISGKLSK-PRDEYVRIIEESGASFHESLTKKTDFLLLGQSAGSKIEKAKKAGIKI 677 Query: 709 MNEEQFLFLLQQYNTT 724 +NE QF L++ T Sbjct: 678 INEVQFFDLIKNSKKT 693 >gi|289663144|ref|ZP_06484725.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 833 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 223/690 (32%), Positives = 353/690 (51%), Gaps = 92/690 (13%) Query: 12 LSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 +++ + + +L I + Y+ +P + D +YD L R +A+ +P LA Sbjct: 1 MTVSPDPAQRIDALRSRIEDANYRYHVLDEPQMADVDYDRLMRELEALEAEYPQLA---S 57 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G +V H++P LSL +N E++ +F+ RI + K F+ Sbjct: 58 ADSPTQRVGHLAASRFAEVRHALPMLSLGNAFNDEEVTEFVRRISERLEVK---QPLFSA 114 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189 EPK+DG I++RYE G+FV A RGDG +GEDVSA +R + IP L P+++EVRG Sbjct: 115 EPKLDGLAISLRYENGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPQVLEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE 248 EVY+ + F + N +M A G K ANPRN A+G LR+L+ R L+FF +G+G+ SE Sbjct: 175 EVYMPRAAFESYNAQMRAQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSE 234 Query: 249 IF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + +L ++R GFPV++ V G+++YY + + R L +DIDG+VYK+D Sbjct: 235 GVLPQTHSAILAQLRAWGFPVSSLVEVVQGSDGLLAYYQRIGAARDGLAFDIDGVVYKLD 294 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + Q+++G +R+PRW I+HKF ++ ST + I+IQIGRTG TPVARL+PV++ G + Sbjct: 295 DLAGQREMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVI 354 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +TNATLHN D I L D+RVGD V+V+RAG+VIP+V ++ ++R P Q Sbjct: 355 VTNATLHNADQIARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQA 403 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + P+ CP+C S +VR+ A RC+G L C AQ+ E +HFVSR A +++GLG Sbjct: 404 WQMPTQCPVCGSEIVREEG------QAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLG 457 Query: 488 KQQL-------------DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK----------- 523 ++ + D + + D +R+ + + + + Sbjct: 458 EKFIEVLVDSGLVQGVADIYLLTVDQLLQLRMISTAESPHAFLREAREHLASGAYAQLET 517 Query: 524 -------------------------------IENILGFGDVSVTNLYDSINKRRNISLER 552 N NL ++I R+ +LER Sbjct: 518 TVVGIGVDMAGEREVPPTWQADLLRAGLPKFDWNRKKIATKWAENLIEAIETSRDTTLER 577 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+F+LGI HVG A++L+ ++ + W RVP +G +A+A+ Sbjct: 578 FLFALGIEHVGESTAKALSAWFGDLELIRHLP----------WPLFKRVPDIGGEVARAL 627 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKN 642 F P N A++ LL+ H + Sbjct: 628 GHFLDQPGNQQAIDDLLQRGVRIGDTHPPS 657 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 6/149 (4%) Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLV-GDIIAQAIVEFYQNPRNICAVEAL---LKEVS 633 Q A +++ A +L + V ++A A++++ P N A ++ V Sbjct: 684 QQLAAAVDSFAALRTAGADALQQ-AGVPAPVVA-ALLQWLDRPENAALASAAQQAMETVL 741 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 + + + ++ + +V TGTL + R A++ + LGA V+ +S+KT ++ G+ Sbjct: 742 ARLPEADALQTGPLDGQSVVITGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEE 801 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 GSKL+KAQ LGV I +E + L L ++ Sbjct: 802 AGSKLDKAQSLGVDIWDEARLLAFLSEHG 830 >gi|317502015|ref|ZP_07960199.1| DNA ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|316896695|gb|EFV18782.1| DNA ligase [Lachnospiraceae bacterium 8_1_57FAA] Length = 644 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 182/706 (25%), Positives = 305/706 (43%), Gaps = 68/706 (9%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L + ++ Y Q + I+ + EYD L ++ + + P +G Sbjct: 1 MRELVELLNKARRAYEQENTEIMSNFEYDRLYDELLSLEKE----LETTLASSPTVNVGY 56 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 E+ L K H P LSL+K ++E LR+F+ + K+DG I Sbjct: 57 EVLSELPKERHETPMLSLDKTKDVERLREFL------------GDQQAVISWKMDGLTIV 104 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + YE G A RG+G GE V+ + +P LS+ + +RGE IS DF Sbjct: 105 LTYENGVLKKAVTRGNGEIGEVVTNNAKVFRNVP--LSIPFKGELVLRGEAVISYKDFEK 162 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259 +N+E I Y NPRN SG +R+LN R + F+ L K + + Sbjct: 163 INEE-IGDADAKYKNPRNLCSGSVRQLNNEVTAKRNVRFYAFTLVKADNVDFENSRAYQL 221 Query: 260 KM-RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 K + GF V G DGLV D+ S + LG Sbjct: 222 KWLQEQGFDVVEHHLVTRDTVG--DEVAWFAEHIRENEVPSDGLVLIYDDISYGQSLGTT 279 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 A+ PR + K+ ++ T + +I+ RTG++ PVA +PV + G ++ A++HN Sbjct: 280 AKFPRDSFAFKWEDEVRKTTIREIEWSPSRTGLINPVAIFDPVELEGTTVSRASVHNISI 339 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 ++ L+ + +GD V V +A +IP++ + + P CP+C+ Sbjct: 340 MEELE-----------LGIGDTVTVYKANMIIPQIAENLTRSGVS-----EIPKECPVCK 383 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 + T L C A+ ++ F SRDA NIEGL + L+ F + Sbjct: 384 KPTKISMENNTKTL-----YCMNSKCQAKHVKSFSLFASRDAMNIEGLSEATLEKFIIN- 437 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 ++ DIF L R + +I+ + GFG+ S NL I R +L R I+SLG Sbjct: 438 ---GYVKDFTDIFHLDRYEA----EIKTMEGFGEKSYENLRKRIENARKTTLPRLIYSLG 490 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I ++G A+ + + + L + VG +IA VE++++ Sbjct: 491 IPNIGISNAKMICRALG---------EDPKRVIRATEEELSAISGVGGVIAGTFVEYFKD 541 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVV 677 ++ + LLKEV + E+ + V TG+++ R + +E + + G V Sbjct: 542 TAHVDVFDRLLKEVELTKETSEE--DQKFAGVNFVITGSVEHFVNRAQVKEEIEKRGGKV 599 Query: 678 SAILSRKTDIIIVGDNPGS---KLEKAQQLGVKIMNEEQFLFLLQQ 720 + ++ KT+ +I D GS K +KA++LG+ I++EE FL ++ + Sbjct: 600 TGSVTSKTNYLINND-TGSGTAKNKKARELGIPIISEEDFLQMMNE 644 >gi|323695090|ref|ZP_08109232.1| DNA ligase [Clostridium symbiosum WAL-14673] gi|323500845|gb|EGB16765.1| DNA ligase [Clostridium symbiosum WAL-14673] Length = 663 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 177/717 (24%), Positives = 296/717 (41%), Gaps = 80/717 (11%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IE + L +S YYQ S+ I+ + EYD L + Sbjct: 8 IENKTARIRELVDTLSAAGRAYYQESREIMSNFEYDRLYDELAELEKE----TGIVFAGS 63 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +G E+ SL K H P LSL K ++E+L++++ K Sbjct: 64 PTQNVGYEVMSSLPKERHEKPMLSLNKTKSVEELQEWLGDQKGLL------------SWK 111 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG I + YE G A RG G GE ++ + +P L++ + +RGE I Sbjct: 112 MDGLTIVLTYEGGTLAKAVTRGSGEIGEVITNNAKVFANVP--LNIGFTGQLILRGEAVI 169 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 +DF +N I Y NPRN SG +R+LN R + F+ L + Sbjct: 170 RYSDFEKINA-QIEDVDAKYKNPRNLCSGSVRQLNNEITARRNVRFYAFSLVMADGVDFG 228 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 + + C ++ + E S DGLV D+ Sbjct: 229 NSRKKQFEWLCSQGFEVVDYKEVTRDT-LPGKVQEFSDAVSGNDIPSDGLVLLYDDIEYG 287 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG A+ PR I+ K+ ++ T L I+ RTG++ PVA EPV + G ++ A+ Sbjct: 288 QSLGRTAKFPRDSIAFKWMDEIQETTLSYIEWSASRTGLINPVAVFEPVELEGTTVSRAS 347 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 +HN ++ L+ + VGD++ V +A +IP++ + + D P Sbjct: 348 VHNLSIMEALE-----------LGVGDKITVYKANMIIPQIAENLTKSGVKD-----IPK 391 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C + C A++++ F SRDA NI GL + L+ Sbjct: 392 HCPVCGADT-----EIRQINDVKSLYCTNPDCQAKKIKSFTLFASRDALNIGGLSEATLE 446 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 I ADIF L R +Q +I + GFG S NL S+ K +L R Sbjct: 447 KMI----GVGFIHEYADIFHLDRYEQ----EIVTMDGFGQKSYDNLIASVKKASETTLPR 498 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 ++SLGI +G A+ L + + + + A + L+ V +GD++A A Sbjct: 499 VVYSLGISGIGLANAKMLCRRFKN---------DFAAMRKAEKEELVAVDGIGDVLADAW 549 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVT 671 ++F+ + +N V+ LL E++ E+ + V TG+++ + R + QE + Sbjct: 550 IDFFSSEKNNEIVDHLLDELTIEETAEEEEAEGVFDGISFVITGSVEHFKNRKEIQEIIE 609 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ-----------QLGVKIMNEEQFLFL 717 Q G V+ ++ KT+ +I D +LG+ I++E++F+ + Sbjct: 610 QKGGKVTGSVTAKTNYLINND---------TASSSSKNKKAKELGIPIISEQEFIEM 657 >gi|323485704|ref|ZP_08091041.1| hypothetical protein HMPREF9474_02792 [Clostridium symbiosum WAL-14163] gi|323400967|gb|EGA93328.1| hypothetical protein HMPREF9474_02792 [Clostridium symbiosum WAL-14163] Length = 663 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 177/717 (24%), Positives = 295/717 (41%), Gaps = 80/717 (11%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IE + L +S YYQ S+ I+ + EYD L + Sbjct: 8 IENKTARIRELVDTLSAAGRAYYQESREIMSNFEYDRLYDELAELEKE----TGIVFAGS 63 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +G E+ SL K H P LSL K ++E+L++++ K Sbjct: 64 PTQNVGYEVMSSLPKERHEKPMLSLNKTKSVEELQEWLGDQKGLL------------SWK 111 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG I + YE G A RG G GE ++ + +P L++ + +RGE I Sbjct: 112 MDGLTIVLTYEGGTLAKAVTRGSGEIGEVITNNAKVFANVP--LNIGFTGQLILRGEAVI 169 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 +DF +N I Y NPRN SG +R+LN R + F+ L + Sbjct: 170 RYSDFEKINA-QIEDVDAKYKNPRNLCSGSVRQLNNEITARRNVRFYAFSLVMADGVDFG 228 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 + + C ++ + E S DGLV D+ Sbjct: 229 NSRKKQFEWLCSQGFEVVDYKEVTRDT-LPGKVQEFSDAVSGNDIPSDGLVLLYDDIEYG 287 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG A+ PR I+ K+ ++ T L I+ RTG++ PVA EPV + G ++ A+ Sbjct: 288 QSLGRTAKFPRDSIAFKWMDEIQETTLSYIEWSASRTGLINPVAVFEPVELEGTTVSRAS 347 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 +HN ++ L+ + VGD++ V +A +IP++ + + D P Sbjct: 348 VHNLSIMEALE-----------LGVGDKITVYKANMIIPQIAENLTKSGVKD-----IPK 391 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C + C A++++ F SRDA NI GL + L+ Sbjct: 392 HCPVCGADT-----EIRQINDVKSLYCTNPDCQAKKIKSFTLFASRDALNIGGLSEATLE 446 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 I ADIF L R +Q +I + GFG S NL S+ K +L R Sbjct: 447 KMI----GVGFIHEYADIFHLDRYEQ----EIVTMDGFGQKSYDNLIASVKKASETTLPR 498 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 ++SLGI +G A+ L + + + + A L+ V +GD++A A Sbjct: 499 VVYSLGISGIGLANAKMLCRRFKN---------DFAAMRKAKKEELVAVDGIGDVLADAW 549 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVT 671 ++F+ + +N V+ LL E++ E+ + V TG+++ + R + QE + Sbjct: 550 IDFFSSEKNNEIVDHLLDELTIEETAEEEEAEGVFDGISFVITGSVEHFKNRKEIQEIIE 609 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ-----------QLGVKIMNEEQFLFL 717 Q G V+ ++ KT+ +I D +LG+ I++E++F+ + Sbjct: 610 QKGGKVTGSVTAKTNYLINND---------TASSSSKNKKAKELGIPIISEQEFIEM 657 >gi|47459030|ref|YP_015892.1| NAD(+)-dependent DNA ligase [Mycoplasma mobile 163K] gi|81614352|sp|Q6KI95|DNLJ_MYCMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|47458358|gb|AAT27681.1| NAD(+)-dependent DNA ligase [Mycoplasma mobile 163K] Length = 671 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 208/717 (29%), Positives = 355/717 (49%), Gaps = 58/717 (8%) Query: 10 EALSIEQ----ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 ++ + E + L+ +I+ + Y+ Y +P++ DS YDA + + + L Sbjct: 5 SKMNDNEKNNRIISEYNDLKNKINLWNKAYFDYDEPLVEDSIYDATLLKLIKFENQYKFL 64 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 ++ + P IG +++ KV H P LSL K + +DL+ F I + + Sbjct: 65 ---DNSDSPTKNIGAKVSKKFSKVQHQFPMLSLNKAYKFDDLKIFERHINKLGFFPN--- 118 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + LE KIDG I+++Y+ G + A RGDG SGEDV+ + I IP + + I Sbjct: 119 --YFLELKIDGLSISLKYDNGNLIQALTRGDGISGEDVTENVFQIQDIP--KQIKYSKPI 174 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG 244 E+RGE+Y+SK+ F +N+ + +ANPRNAASG LR+L+ + R LN F + + Sbjct: 175 EIRGEIYLSKSTFYEINECQKSQNLTIFANPRNAASGSLRQLDSSIVKERKLNSFFYSVT 234 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL--PYDIDGL 302 + K + ++ F V + + +T + + + Y+IDG+ Sbjct: 235 NPLDHKIKNFNDQELFLKENNFQVPSLNKFVDTIEKAYEFIKDFEKNNYREKLNYEIDGI 294 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KVD+FSL LG+ ++ PR MI+ KF++ T+L+DI I +GRTG +T A LEPV Sbjct: 295 VVKVDDFSLYDILGQTSKFPRSMIAFKFSDISIETKLIDIFISVGRTGKITYNAILEPVI 354 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 I G L++ ATLHN +Y++ L + D V + +AGE+IPKVV + + Sbjct: 355 INGTLVSAATLHNYEYVESL-----------KLNKNDNVKIIKAGEIIPKVVSL---SKK 400 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 F +C C ++V+ + + C +L +++HF S+ A N Sbjct: 401 NSETIFKRIEYCTSCNEKLVQPEDE-------VDQYCINKKCLMIRLRKIEHFASKKAMN 453 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I GLG Q ++ FFK + +D+F L++ + IE+ FG+ S NL +SI Sbjct: 454 ILGLGFQNIEKFFK----LGILTKYSDLFFLEKYKN----LIESQPSFGEKSFNNLIESI 505 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 N+ ++ SLE+FIF++GI+ +G A+ +A N N D+ L + Sbjct: 506 NRSKSNSLEKFIFAIGIKQIGERSAKLIANEVKLLSNLI----------NFDFEKLNNIR 555 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 + ++ F+ + I ++ +L+ + S +++ V TGTL K Sbjct: 556 DISCKTINSLKCFFSDENEIEEIKIILELGLDFKNLENEFESKKLQGLNFVITGTLSK-P 614 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLL 718 R +E + + G V +S + + ++ G+ GSK+EKAQ++ +KI++E +F L+ Sbjct: 615 RDFFKELIIKNGGNVLNSISNRINYLLTGEKSGSKIEKAQKINTIKILDENEFNKLI 671 >gi|16125769|ref|NP_420333.1| DNA ligase, NAD-dependent [Caulobacter crescentus CB15] gi|221234527|ref|YP_002516963.1| NAD-dependent DNA ligase [Caulobacter crescentus NA1000] gi|81535469|sp|Q9A842|DNLJ_CAUCR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781280|sp|B8H5Y7|DNLJ_CAUCN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|13422903|gb|AAK23501.1| DNA ligase, NAD-dependent [Caulobacter crescentus CB15] gi|220963699|gb|ACL95055.1| NAD-dependent DNA ligase [Caulobacter crescentus NA1000] Length = 783 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 239/613 (38%), Positives = 339/613 (55%), Gaps = 24/613 (3%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 IP+ L+ QA ++L L ++ HD Y+Q P + D+EYDALKRR I FP L Sbjct: 4 IPVADLTEAQAVEDLERLADLLATHDIAYHQEDNPTVSDAEYDALKRRNLDIETRFPHLV 63 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R N P ++G V H +P LSL+ ++ ++ +F R+ RF + ++ Sbjct: 64 RD---NSPSMRVGATRAEQFAPVEHGVPMLSLDNAFSNDEAIEFDARVRRFLRISPSETV 120 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEII 185 +T EPKIDG ++RYEKG V A RGDG GEDV+A +R I IP L + P++I Sbjct: 121 AYTAEPKIDGLSASLRYEKGVLVQGATRGDGRVGEDVTANLRTIADIPHRLKGSGWPDVI 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG 244 EVRGEVY+ F A N G++ YANPRN A+G LR+++P R L FF + G Sbjct: 181 EVRGEVYVELAAFAAFNKAAEEAGQRTYANPRNFAAGSLRQIDPKISAQRPLRFFGYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 SE FA Q+ L+++ GF ++ G++ Y + + +R TL +DIDG+V Sbjct: 241 LVSEGFADSQWGALERLAEWGFVTTAPPAQRVLNAQGLLDIYAQFEVLRPTLGFDIDGVV 300 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YKVD+ LQ++LG +RSPRW I+ KF ++A T L ID+Q+GRTG +TPVARL+PV + Sbjct: 301 YKVDDLELQRRLGFVSRSPRWAIARKFPAQRARTVLEAIDLQVGRTGAITPVARLKPVTV 360 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII-VNERH 422 GG +TNATLHN D I L D+RVGD V+++RAG+VIP++V++ Sbjct: 361 GGVSVTNATLHNGDEIARL-----------DVRVGDTVVIQRAGDVIPQIVEVALDARPD 409 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P P+ FP CP + +G+ RCTG AC Q++E L+HFVSR AF+ Sbjct: 410 PAPPPYEFPHVCPCPLQTPLAREVTASGQESVVRRCTGEFACPFQRVEHLRHFVSRRAFD 469 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEGLG++QL FF+ I PADIF L R + G+G+ SV NL I Sbjct: 470 IEGLGEKQLQAFFEE----GWITEPADIFKL-ARDAEKLAVLREREGYGETSVANLVKGI 524 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA-QEINNIIAHNNDDWLSLIRV 601 RR I ++R I+ LG R +G + LA+ + +++ A + +L L Sbjct: 525 EARRTIGMDRMIYGLGARDIGETTSTVLARNFDRFEDLQAAAEAAARALPGETYLELSTA 584 Query: 602 PLVGDIIAQAIVE 614 P VG +VE Sbjct: 585 PGVGPKALDMLVE 597 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 86/165 (52%), Gaps = 2/165 (1%) Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + + +LA+ Y ++ FA + DD+L L + VG + AQ++ Sbjct: 619 GHAVPKLTKPARAALAQRYGTWDAFADGLVAAASGAPGDDYLHLAAIDGVGPVAAQSLAR 678 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F+ N V L+ E+ K + + K +VFTG+L+K+ R +A+ LG Sbjct: 679 FFAEDHNRQKVANLVAELDIQPVAKPK-TDTAVAGKTIVFTGSLEKMTRDEAKAQAEGLG 737 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A V++ +S+KTD+++ G GSKL+ A LG+++M E+++L L+ Sbjct: 738 AKVASSVSKKTDLVVAGPGAGSKLKTATDLGIQVMTEDEWLELVA 782 >gi|15594897|ref|NP_212686.1| NAD-dependent DNA ligase LigA [Borrelia burgdorferi B31] gi|7673988|sp|O51502|DNLJ_BORBU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|2688477|gb|AAC66923.1| DNA ligase (lig) [Borrelia burgdorferi B31] Length = 660 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 203/712 (28%), Positives = 347/712 (48%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + ++E++ L++ I D YY S P + D YD R + +P+ Sbjct: 1 MS-SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K G ++ +V HS P LSL+K+++++ L+ +I +I +NS ++E Sbjct: 57 DSPTLKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG I + Y+ G A RG+G G DV+ +R I IP L + + +RGEV Sbjct: 111 PKIDGCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEV 168 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 YI+K +FL +N + KPY N RN ASGILRR++ ++ + + + Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEF 224 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K +++ LGF VN +R + + +++Y ++ R + Y+IDG+V KV + Sbjct: 225 KTNDLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSD 284 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+L+++LG A P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA I Sbjct: 285 FALRERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 T+ATLHN+DYI+ + + VGD V V R G+VIP V +I F Sbjct: 345 TSATLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVINKFSTG---FF 390 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C++ VV++ AH C + +ER+K+F S++ +IEG Sbjct: 391 KVPDNCPACKTAVVKEG---------AHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSD 441 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + F F+ + I D++T K+ GF D + NL +SI + Sbjct: 442 KIISFLFEKK----FIFSEIDLYT------FDFYKLLEFKGFKDRKINNLINSIEASKKK 491 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + + S+GI+ +G R L +L+ N ++ + + +L+++ +G+ I Sbjct: 492 PFSKLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKI 548 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQ 667 A I+E + + + + + +++ KK TGT R Sbjct: 549 ALNIIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIII 608 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + GA+ + ++ D +IVG+ GSKL+KA L +KIM+ E L Sbjct: 609 DKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660 >gi|224826983|ref|ZP_03700081.1| DNA ligase, NAD-dependent [Lutiella nitroferrum 2002] gi|224600816|gb|EEG07001.1| DNA ligase, NAD-dependent [Lutiella nitroferrum 2002] Length = 815 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 216/664 (32%), Positives = 340/664 (51%), Gaps = 78/664 (11%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 EQA + ++ L ++ + YY+ +P + D EYD L R +A+ A P+L R+ + P Sbjct: 12 EQAVQRIAELVPLLNRYSREYYERDEPTVPDVEYDRLYRELEALEAAHPELRRA---DSP 68 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNI----------EDLRKFITRIYRFWQKKDDN 124 ++GG VTH++P LSL ++ +L +F R+ + Sbjct: 69 TLRVGGAPLAEFSSVTHAVPMLSLNNAFSDLDAADFEQRHAELIQFDERVRKALG---GA 125 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPE 183 + + ++PK DG +++ Y G V A RGDG SGE+V+ +R + IP R+ + P Sbjct: 126 EVEYAVQPKFDGLAVSLLYRDGVLVQGATRGDGFSGENVTENLRTVRAIPLRLTIEHPPA 185 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHG 242 ++EVRGEV + K DF LN E A G K +ANPRNAA+G LR+L+ R L+FF + Sbjct: 186 LLEVRGEVLMLKRDFEQLNAEQAARGDKTFANPRNAAAGSLRQLDSRITARRRLSFFAYA 245 Query: 243 LGKTSE-IFAKGQYEMLQKMRCLGFP--VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + + + L + LG P G+ +YY + R++LPYDI Sbjct: 246 IAQVEGADWPVSHQAELDWLHRLGIPLVPAELRPVVRGVAGLAAYYEAILRQRASLPYDI 305 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKV++ + Q+ LG +R+PRW I+HKF ++A T + I+ Q+GRTG +TPVARL+ Sbjct: 306 DGVVYKVNDRAQQEALGFVSRAPRWAIAHKFPAEEALTLVEAIEEQVGRTGAITPVARLK 365 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG +TNATLHNED ++ +D+RVGD V+V+RAG+VIP+VV +++ Sbjct: 366 PVFVGGVTVTNATLHNEDEVRR-----------KDVRVGDTVIVRRAGDVIPEVVAVVLE 414 Query: 420 ERH---------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLAC 464 R P + P+ CP+C S VVR+ A RC+GGL C Sbjct: 415 RRPMRPVAGGDLFSSGDEPQHPAYRLPTACPVCGSHVVREEGE------AIARCSGGLIC 468 Query: 465 SAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ-----RRQQT 519 AQ+ + ++HF R +I+GLG++ +D + + AD++TLQ + Sbjct: 469 RAQRSQAIQHFAGRRMMDIDGLGERYIDNLVE----FGYVNSVADLYTLQLADLLEMKHR 524 Query: 520 STTKIENIL------GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 + + + NL +I R +L R +F+LGIRHVG A++LA + Sbjct: 525 ADERDGVVPETVQKGQIATKWAENLLAAIAASRRPTLARLLFALGIRHVGESTAKTLADW 584 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + + ++A +G ++A+AI +F+ N +EALL+ V Sbjct: 585 LGRLELIRRAPAPLLAALP----------DIGGVVAEAIADFFAEDNNETVLEALLRHVQ 634 Query: 634 PSIG 637 P Sbjct: 635 PGDE 638 Score = 164 bits (415), Expect = 4e-38, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 4/148 (2%) Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637 Q A +I + A + L+++ L D+ A+ ++ P + L V + Sbjct: 669 QQLAGQIAGLAALAASERRELMQLDLPADVF-NALADWLDEPGRRAELSQLASLVDSILA 727 Query: 638 RHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694 SS +E K LV TGTL + R +A+E + G V+ +S+KT ++ G+ Sbjct: 728 DLPTQPSSANLLLEGKTLVLTGTLPTLSRDQAKELIEAAGGKVAGSVSKKTHYVVAGEAA 787 Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 GSKL KA++LGV +++E L LL Q Sbjct: 788 GSKLAKAEELGVPVLDEAGLLALLDQAE 815 >gi|300691610|ref|YP_003752605.1| DNA ligase [Ralstonia solanacearum PSI07] gi|299078670|emb|CBJ51328.1| DNA ligase [Ralstonia solanacearum PSI07] Length = 813 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 221/647 (34%), Positives = 334/647 (51%), Gaps = 69/647 (10%) Query: 29 SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88 + + YY +P + D+EYD L R +A+ P+L P+ P ++GG + Sbjct: 25 NRYAHEYYVLDQPSVPDAEYDRLYRELEALEADHPELK---TPDSPTLRVGGAVLPEFAP 81 Query: 89 VTHSIPTLSLEKIWNI--EDLRKFITRIYRFWQKKD-DNSIFFTLEPKIDGTMITIRYEK 145 V H +P LS+ + + F + R + D S+ + E K DG I +RYEK Sbjct: 82 VRHVVPMLSIRTETDTTADGALAFDASVRRELGLAESDPSVEYAAELKFDGLAINLRYEK 141 Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISKNDFLALN 202 G V AA RGDG +GEDV+ IR I IP R ++ +P+++EVRGEVY+ ++DF LN Sbjct: 142 GFLVQAATRGDGTTGEDVTQNIRTIRQIPLGLRPVNGAVPDVLEVRGEVYMRRDDFERLN 201 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGK--TSEIFAKGQYEMLQ 259 G K + NPRN A+G +R+L+P +FF +GLG+ +L Sbjct: 202 ARQRERGEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWAEMPGTHAGVLD 261 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 + GFPV++ G+V ++ ++++ R +LP+DIDG+VYKV+ +LQ++LG R Sbjct: 262 ALVAFGFPVSHERAAVTGGEGLVRFHADIRAKRDSLPFDIDGVVYKVNSLALQRELGFRT 321 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 R PRW ++HK+ ++A T + I +Q+GRTG +TPVARL PV +GG +TNATLHNED + Sbjct: 322 REPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLVPVFVGGVTVTNATLHNEDEV 381 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER---------------HPD 424 + +D+RVGD V+V+RAG+VIP+VV +++ R P Sbjct: 382 RR-----------KDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLFNPAQQPK 430 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 PF P CP+C S VVR+ A RC+GGL CSAQ+ E ++HF R +IE Sbjct: 431 YPPFELPKSCPVCGSHVVREEGE------AVARCSGGLFCSAQRKEAIRHFAGRRMMDIE 484 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL-----------GFGDV 533 GLG++ +D + E + AD++ L + + Sbjct: 485 GLGERYIDNLVELE----YVHGIADLYRLTLDDFLEMKRRADERDGVTPETVAAGKIATK 540 Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593 NL I + L RF+F+LGIRHVG A++LA + S + + Sbjct: 541 WAENLLAGIQASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAVIRRAPAPL------ 594 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 L+ +P VG +A+AI +F+ P+N A++ALL G H Sbjct: 595 ----LLTLPDVGATVAEAIADFFAEPKNQQALDALLAAGVTPQGEHP 637 Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 17/167 (10%) Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LG+ + A ++ LA + A + D ++ +++++ Sbjct: 654 ALGVPKLTATRSKQLATLVPALAQLATADAAQLEGLPAD-------------VSASLLDW 700 Query: 616 YQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + + +EAL E+ ++ + K +V TGTL + R A+ + Sbjct: 701 LEADDHRARLAQLEALRAELLAAMPA-GTAEEGALSGKTVVLTGTLPNLTRDAAKAMLEA 759 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GA VS +S+KTD ++ G GSKL +AQ+LGV++++E L LLQ Sbjct: 760 AGAKVSGSVSKKTDYLVAGVEAGSKLARAQELGVRVLDEAGMLALLQ 806 >gi|195941686|ref|ZP_03087068.1| DNA ligase (lig) [Borrelia burgdorferi 80a] gi|225549484|ref|ZP_03770450.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 118a] gi|225369761|gb|EEG99208.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 118a] Length = 660 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 203/712 (28%), Positives = 347/712 (48%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + ++E++ L++ I D YY S P + D YD R + +P+ Sbjct: 1 MS-SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K G ++ +V HS P LSL+K+++++ L+ +I +I +NS ++E Sbjct: 57 DSPTLKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG I + Y+ G A RG+G G DV+ +R I IP L + + +RGEV Sbjct: 111 PKIDGCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEV 168 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 YI+K +FL +N + KPY N RN ASGILRR++ ++ + + + Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEF 224 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K +++ LGF VN +R + + +++Y ++ R + Y+IDG+V KV + Sbjct: 225 KTNDLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSD 284 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+L+++LG A P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA I Sbjct: 285 FALRERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 T+ATLHN+DYI+ + + VGD V V R G+VIP V +I F Sbjct: 345 TSATLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVINKFSTG---FF 390 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C++ VV++ AH C + +ER+K+F S++ +IEG Sbjct: 391 KVPDNCPACKTAVVKEG---------AHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSD 441 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + F F+ + I D++T K+ GF D + NL +SI + Sbjct: 442 KIISFLFEKK----FIFSEIDLYT------FDFYKLLEFKGFKDRKINNLINSIEASKKK 491 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + + S+GI+ +G R L +L+ N ++ + + +L+++ +G+ I Sbjct: 492 PFSKLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKI 548 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQ 667 A I+E + + + + + +++ KK TGT R Sbjct: 549 ALNIIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIVI 608 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + GA+ + ++ D +IVG+ GSKL+KA L +KIM+ E L Sbjct: 609 DKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660 >gi|145356969|ref|XP_001422695.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582938|gb|ABP01012.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 755 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 242/772 (31%), Positives = 371/772 (48%), Gaps = 93/772 (12%) Query: 31 HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN--LSLFK 88 HD YY ++P+I DSEYD ++ R DAIA A + G ++G + L K Sbjct: 2 HDGKYYNDAEPVISDSEYDGMRARYDAIAAA---HPTAAKAGGARARVGATPDGASGLEK 58 Query: 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS-----IFFTLEPKIDGTMITIRY 143 + H++P SL +++ + F+ R+ + + + + I + EPK+DG ++RY Sbjct: 59 IAHAVPMRSLGNAFDVGQVEAFMKRVEKLRGETEGEAATTTAIEYCAEPKVDGASASLRY 118 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 E G+ VYA RGDG GEDV+ + +P L+ P ++E+RGEV+++ DF +N Sbjct: 119 ENGELVYAVSRGDGEMGEDVTRHLIGARGVPMKLAEPYPAVLEIRGEVHVADEDFQRVNA 178 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMR- 262 E A G + + N RNAA+G +R L D L F +G G + + Sbjct: 179 ERAATGLRVFKNARNAAAGAMRTLVVDDNQMPLRFLAYGWGAVGASNEETNAPWRTQSEF 238 Query: 263 ------CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 GF + A T ++ Y+ ++ R T+PY+IDG+VYKV+ LQ LG Sbjct: 239 LSAFLPAQGFDAVPFLGVAKTIGELIEAYDALEIARPTMPYEIDGVVYKVNSVELQTALG 298 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 AR PRW I+HKF A T L I+IQ+GRTG LTPVA L+PV+IGGA I+ ATLHN Sbjct: 299 ADARQPRWAIAHKFTAMSAVTTLRAIEIQVGRTGALTPVALLDPVDIGGASISRATLHNF 358 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA---------QP 427 D I + ++VG +V V+RAG+VIP+VV + ++ + Sbjct: 359 DEIAR-----------KHLKVGAQVTVERAGDVIPRVVSLAGDDLAEASAYAEDIKPLPE 407 Query: 428 FSFPSFCPICQSRVVRDLNPKTGK-LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + PS CP C S VVR + + + RCTGGL C +Q +ERL HF +RDA +I GL Sbjct: 408 WLPPSKCPDCGSSVVRAPLSASKTAMGSIVRCTGGLKCPSQSMERLLHFCARDALDIRGL 467 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRR------------------QQTSTTKIENIL 528 + L+ + ++ PADIFTL+RR + + Sbjct: 468 ARGTLETLHRE----GVVKTPADIFTLERRFGPDSGDAVPTWWRYAGVKNSKGEIKHGSD 523 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 G +V +R+ + L RFI++LGI ++GA A+ LA +Y S F + Sbjct: 524 GLKQSAVKLFQAIEVRRQGVPLHRFIYALGIPNIGAHTAKVLATHYGSLAAFKKAALAAA 583 Query: 589 AHNNDDWL--SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNV 643 +L V VG ++AQ++V+F+ P N V+ ++ + KN Sbjct: 584 KGGPASLAHAALTHVDGVGPVLAQSLVDFWGEPGNAFIVDEIIATGVVVLDADASSSKNQ 643 Query: 644 SSE---------------------------IENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 S + K++FTGT+ R + + G Sbjct: 644 PSPRFAEPASSSSVSPTPSPTVPSPEPTADLRGMKILFTGTIDGFSRDDVHDLIRAAGGD 703 Query: 677 VSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRI 727 V++ LSRKT +++ G G SKL KA+ L V I++ +F+ L + +L + Sbjct: 704 VASTLSRKTALVVAGVGAGPSKLAKARDLAVPIVDASRFVSALTSGDGSLPL 755 >gi|216264759|ref|ZP_03436751.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 156a] gi|223888694|ref|ZP_03623285.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 64b] gi|225548725|ref|ZP_03769772.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 94a] gi|215981232|gb|EEC22039.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 156a] gi|223885510|gb|EEF56609.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 64b] gi|225370755|gb|EEH00191.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 94a] Length = 660 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 201/712 (28%), Positives = 343/712 (48%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + ++E++ L++ I D YY S P + D YD R + +P+ Sbjct: 1 MS-SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K G ++ +V HS P LSL+K+++++ L+ +I +I +NS ++E Sbjct: 57 DSPTLKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG I + Y+ G A RG+G G DV+ +R I IP L + + +RGEV Sbjct: 111 PKIDGCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEV 168 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 YI+K +FL +N + KPY N RN ASGILRR++ ++ + + + Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEF 224 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K +++ LGF VN +R + + +++Y ++ R + Y+IDG+V KV + Sbjct: 225 KTNDLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSD 284 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+L+++LG A P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA I Sbjct: 285 FALRERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 T+ATLHN+DYI+ + + VGD V V R G+VIP V +I F Sbjct: 345 TSATLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVINKFSTG---FF 390 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C++ VV++ AH C + +ER+K+F S++ +IEG Sbjct: 391 KVPDNCPACKTAVVKEG---------AHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSD 441 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + F F+ + L K+ GF D + NL +SI + Sbjct: 442 KIISFLFEK-------KFIFSEIDLYAFD---FYKLLEFKGFKDRKINNLINSIEASKKK 491 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + + S+GI+ +G R L +L+ N ++ + + +L+++ +G+ I Sbjct: 492 PFSKLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKI 548 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQ 667 A I+E + + + + + +++ KK TGT R Sbjct: 549 ALNIIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIVI 608 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + GA+ + ++ D +IVG+ GSKL+KA L +KIM+ E L Sbjct: 609 DKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660 >gi|325278944|ref|YP_004251486.1| DNA ligase [Odoribacter splanchnicus DSM 20712] gi|324310753|gb|ADY31306.1| DNA ligase [Odoribacter splanchnicus DSM 20712] Length = 829 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 183/623 (29%), Positives = 303/623 (48%), Gaps = 51/623 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + + L + + YH+ YY + P I D E+D L + + +P+ DPN Sbjct: 1 MQTEKDRILELRKALEYHNYKYYIENAPEISDREFDGLMHDLEKLEEKYPE---MYDPNS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G ++N +V H P LSL ++ E+LR F R+ + + + + E K Sbjct: 58 PTQRVGRDINQEFTQVAHKYPMLSLGNTYSEEELRDFDQRVRKVVG----DRVQYVCELK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 DGT I++ Y G+ A RGDG G+DV+A +R I T+P L + P E+RGE+ + Sbjct: 114 YDGTSISLTYVNGELTQAVTRGDGVKGDDVTANVRTIRTVPLKLRGDYPPEFEIRGEILM 173 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + F LN E G +ANPRNAA+G L+ N + + + A+ Sbjct: 174 PFSVFNRLNQEKAEAGEPLFANPRNAAAGTLKLQNSSLVAKRHLDCFLYYIPGEVTPAET 233 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Y L K + GF + + A++F + ++ + R+ LP IDG+V KV++ +Q Sbjct: 234 HYGNLMKAKEWGFHMPPYIHLADSFEEVWAFITKWDKERTGLPVPIDGIVIKVNDIGMQH 293 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG A+SPRW I++KF +Q T L+D+ Q+GRTG +TPVA LEPV+I G + A+L Sbjct: 294 LLGYTAKSPRWAIAYKFKAEQVETPLIDVVYQVGRTGAVTPVANLEPVHIAGTTVKRASL 353 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I L D+ D V V++ GE+IPK+V + +R A F + Sbjct: 354 HNADIISSL-----------DLHEHDTVYVEKGGEIIPKIVGVDRAKRREGAAAVEFITC 402 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C ++++R A H C C Q +++HFVSR A NIEG+G++ ++ Sbjct: 403 CPECGTKLIRIEGE------ANHYCPNEDHCPPQIAGKIEHFVSRKAMNIEGMGEETIEL 456 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 IR ADI+ L ++ E ++G + ++ ++ + Sbjct: 457 LLGKR----LIRDVADIYGLPAKR-------EELIGLEKIVYPESFEMT--SIPLAKVIY 503 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG-DIIAQAI 612 F +GI+++ + A +LA ++ S + +A L V +G + I Sbjct: 504 GFEIGIKNISSRNAETLAGHFGSLEAYAAASK----------QELSAV--IGDETTVNRI 551 Query: 613 VEFYQNPRNICAVEALLKEVSPS 635 +++++ P N VE L + + Sbjct: 552 LDYFRTPFNQ-TVERLKEAGAVE 573 Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 53/193 (27%), Positives = 94/193 (48%), Gaps = 11/193 (5%) Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 + + SV NL I K + + +LGIR++G +R+LAK + + Sbjct: 648 VYRMQEKSVDNLIAGIEKSKTAGFPALLNALGIRYIGETASRNLAKSFRELTRLMEA--- 704 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 D+ L V +G+ +A +I+ ++ N V+ L+ + + + Sbjct: 705 -------DFEQLTEVEDIGEQMANSILRYFGKEENRQLVKRLIDYGVEAEIGETETGNDS 757 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + + V TGTL + R +E + G VS +S KT ++ G+N GSKL+KA++LG Sbjct: 758 LTGQTFVITGTLTR-PREYFKELILNAGGKVSDSVSAKTAYLLAGENAGSKLKKAEKLGT 816 Query: 707 KIMNEEQFLFLLQ 719 +I++EE+F LL+ Sbjct: 817 RIISEEEFYELLK 829 >gi|221218112|ref|ZP_03589578.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 72a] gi|221192060|gb|EEE18281.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 72a] Length = 660 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 202/712 (28%), Positives = 346/712 (48%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + ++E++ L++ I D YY S P + D YD R + +P+ Sbjct: 1 MS-SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K G ++ +V HS P LSL+K+++++ L+ +I +I +NS ++E Sbjct: 57 DSPTLKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG I + Y+ G A RG+G G DV+ +R I IP L + + +RGEV Sbjct: 111 PKIDGCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEV 168 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 YI+K +FL +N + KPY N RN ASGILRR++ ++ + + + Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEF 224 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K +++ LGF VN +R + + +++Y ++ R + Y+IDG+V KV + Sbjct: 225 KTNDLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSD 284 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+L+++LG A P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA I Sbjct: 285 FALRERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 T+ATLHN+DYI+ + + VGD V V R G+VIP V +I F Sbjct: 345 TSATLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVINKFSTG---FF 390 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C++ VV++ AH C + +ER+K+F S++ +IEG Sbjct: 391 KVPDNCPACKTAVVKEG---------AHFFCQNNNCPSVAVERIKYFCSKNCMDIEGFSD 441 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + F F+ + I D++T K+ GF D + NL +SI + Sbjct: 442 KIISFLFEKK----FIFSEIDLYT------FDFYKLLEFKGFKDRKINNLINSIEASKKK 491 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + + S+GI+ +G L +L+ N ++ + + +L+++ +G+ I Sbjct: 492 PFSKLLLSMGIKDLGENTIMLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKI 548 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQ 667 A I+E + + + + + +++ KK TGT R Sbjct: 549 ALNIIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIII 608 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + GA+ + ++ D +IVG+ GSKL+KA L +KIM+ E L Sbjct: 609 DKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660 >gi|216263494|ref|ZP_03435489.1| DNA ligase, NAD-dependent [Borrelia afzelii ACA-1] gi|215980338|gb|EEC21159.1| DNA ligase, NAD-dependent [Borrelia afzelii ACA-1] Length = 660 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 204/712 (28%), Positives = 352/712 (49%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + ++E++ L++ I + YY S P + D YD R + +P+ Sbjct: 1 MS-SKIQQEIADLKKLIRKWNKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K G ++ +V HS+P LSL+K++N++ L+ +I +I NS ++E Sbjct: 57 DSPTLKFGSDLLNDFKEVEHSVPVLSLDKVYNLDLLKLWIDKI------DFSNSFNISVE 110 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG I + Y+ G A RG+G G DV+ IR I +P L + + +RGEV Sbjct: 111 PKIDGCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHVPLFLGEKV--DLVLRGEV 168 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 YI+K +FL +N + KPY N RN ASGILRR++ ++ + + + Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLDF 224 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANT---FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K ++K++ LGF VN +R + +++Y ++ R++ Y+IDG+V KV + Sbjct: 225 KTNNLAIEKLKKLGFKVNPLIRFFDQKSSIKEVLNYIADITKKRNSFEYEIDGVVLKVSD 284 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+L+++LG P+W +++KF +++ I +Q+GR+G +TPVA ++ V + GA I Sbjct: 285 FALREKLGYTLHHPKWAMAYKFEALSGFSKVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 TNATLHN+DYI + ++ VGD V V R G+VIP V +I F Sbjct: 345 TNATLHNQDYIASI-----------NLNVGDIVKVSRRGDVIPAVEMVINKFSTG---FF 390 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C++ VV++ AH C + +ER+K+F S++ +IEG Sbjct: 391 KIPDKCPSCKTVVVKEG---------AHFFCTNNNCPSVAVERIKYFCSKNCMDIEGFSD 441 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + F F+ + I D++T + K+ GF D + NL +SI + Sbjct: 442 KTISFLFEKK----FISSEIDLYT------FNFYKLLKFKGFKDRKINNLINSIEASKKK 491 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + + S+GI+ +G R L +L+ N ++ + + +L+L+++ +G+ I Sbjct: 492 PFSKLLLSIGIKELGENTIRLL---FLNNLNSFSKLFRLCQDRDFAFLTLLKIKGIGEKI 548 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQ 667 A I++ + N I + R + +++ KK TG+ R Sbjct: 549 ALNIIDAFNNSIMINKFKVFENLGFKMEERILIDDENKLLVGKKFCITGSFNGYSRPIVI 608 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + GA+ +++ D ++VG+ G+KL+KA L VKIM+ E L Sbjct: 609 DKLENKGAIFKTCVTKGLDFLVVGEKAGTKLKKALNLNVKIMSFEDIKSYLD 660 >gi|225552370|ref|ZP_03773310.1| DNA ligase, NAD-dependent [Borrelia sp. SV1] gi|225371368|gb|EEH00798.1| DNA ligase, NAD-dependent [Borrelia sp. SV1] Length = 660 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 204/712 (28%), Positives = 348/712 (48%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + ++E++ L++ I D YY S P + D YD R + + +P+ Sbjct: 1 MS-SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELENKYPEYKTL--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K G ++ +V HS P LSL+K+++++ L+ +I +I +NS ++E Sbjct: 57 DSPTLKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG I + Y+ G A RG+G G DV+ +R I IP L + + +RGEV Sbjct: 111 PKIDGCSIVLYYKDGILEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEV 168 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 YI+K +FL +N + KPY N RN ASGILRR++ ++ + + + Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRIDSREVANFPLNIFIYDFLNAGLEF 224 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K +++ LGF VN +R + + +++Y ++ R + Y+IDG+V KV + Sbjct: 225 KTNDLATARLKKLGFKVNPLIRFFDQKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSD 284 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+L+++LG A P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA I Sbjct: 285 FALRERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 T+ATLHN+DYI + + VGD V V R G+VIP V +I F Sbjct: 345 TSATLHNQDYIASI-----------GLNVGDVVKVSRRGDVIPAVEMVINKFSTG---FF 390 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C+ VV++ AH C + +ER+K+F S++ +IEG Sbjct: 391 KVPDNCPACKMAVVKEG---------AHFFCPNNKCPSVAVERIKYFCSKNCMDIEGFSD 441 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + F F+ + I D++T K+ GF D + NL +SI + Sbjct: 442 KIISFLFEKK----FIFSEIDLYT------FDFYKLLEFKGFKDRKINNLINSIEASKQK 491 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + + S+GI+ +G R L +L+ N ++ + + + +L+++ +G+ I Sbjct: 492 PFSKLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRDFAFSTLLKIKGIGEKI 548 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQ 667 A I+E + + + + E + ++ + KK TGT R Sbjct: 549 ALNIIEAFNDSVMLNKFKFFENLEFKMEEVVEIDGENKFLAGKKFCITGTFNGYSRSIVI 608 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + GA+ + ++ D +IVG+ GSKL+KA L +KIM+ E L Sbjct: 609 DKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660 >gi|291549033|emb|CBL25295.1| DNA ligase, NAD-dependent [Ruminococcus torques L2-14] Length = 652 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 169/712 (23%), Positives = 306/712 (42%), Gaps = 65/712 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + ++ + L + ++ Y Q + I+ + EYD L + + Sbjct: 1 MDEQKEMNHMRELVELLNRARRSYEQENTEIMSNYEYDKLYDELLELEEK----LGTRMA 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P +G E+ L K H P LSL+K ++E L++F+ + Sbjct: 57 NSPTVNVGYEVLSELPKERHERPMLSLDKTKDVERLKEFL------------GGQKALIS 104 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG + + Y+ G+ V A RG+G GE ++ + +P L + + +RGE Sbjct: 105 WKLDGLTVVLTYQNGEIVKAVTRGNGVIGEVITNNAKVFKNVP--LKIPYQGELVLRGEA 162 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 IS DF +N+E+ V Y NPRN SG +R+LN R + F+ L + + Sbjct: 163 VISYKDFEKINEEIEDV-DAKYKNPRNLCSGSVRQLNNEITAKRNVRFYAFTLVRAEGVD 221 Query: 251 AKGQYEMLQKM-RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + + + GF V + + + DGLV D+ Sbjct: 222 FQNSRKYQMQWLENQGFDVVENHEVTRDTIEEEVAWFAREIEHN--EVPSDGLVLVYDDI 279 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + + LG A+ PR + K+A++ +T+LL+I+ RTG++ PVA EPV + G ++ Sbjct: 280 AYGQSLGTTAKFPRDSFAFKWADEIRNTKLLEIEWSPSRTGLINPVAVFEPVELEGTTVS 339 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A++HN ++ L+ + VGD + V +A +IP++ + + D Sbjct: 340 RASVHNISIMEELE-----------LGVGDEIQVYKANMIIPQIAENLTRSGVKD----- 383 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP+C + +T L + + FVSRDA NIEGL + Sbjct: 384 IPKVCPVCGGETKISMENETKTLYCTNPKCQAKHV-----KSFALFVSRDAMNIEGLSEA 438 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ F ++ D+F L + +I + GFG+ S L SI K R + Sbjct: 439 TLEKFIFH----GYVKDFTDLFHLDNYRD----EIMTMDGFGEKSFLKLQSSIEKARKTT 490 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R ++ LGI +G+ A+ + + + + + L+ + VG ++A Sbjct: 491 LARLVYGLGIPGIGSANAKVICRALGN---------DSQRVLQAEEAELVEIQGVGAVMA 541 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQE 668 ++ V++++ + + L + S + V TG+++ R + + Sbjct: 542 KSYVDYFKEEEHQEIYKR-LLDEVELEEEEVTEDSQKFAGVNFVITGSVEHFANRAEVKA 600 Query: 669 YVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + G V+ ++ KT+ +I D + SK +KA+ LGV I++E+ FL +L Sbjct: 601 EIEKRGGKVTGSVTSKTNYLINNDVNSTSSKNKKARDLGVPIISEKDFLEML 652 >gi|226320519|ref|ZP_03796084.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 29805] gi|226234083|gb|EEH32799.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 29805] Length = 660 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 203/712 (28%), Positives = 347/712 (48%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + ++E++ L++ I D YY S P + D YD R + +P+ Sbjct: 1 MS-SRVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K G ++ +V HS P LSL+K+++++ L+ +I +I +NS ++E Sbjct: 57 DSPTLKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG I + Y+ G A RG+G G DV+ +R I IP L + + +RGEV Sbjct: 111 PKIDGCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEV 168 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 YI+K +FL +N + KPY N RN ASGILRR++ ++ + + + Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEF 224 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K +++ LGF VN +R + + +++Y ++ R + Y+IDG+V KV + Sbjct: 225 KTNDLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSD 284 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+L+++LG A P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA I Sbjct: 285 FALRERLGYTAHHPKWAMAYKFEALSDFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 T+ATLHN+DYI+ + + VGD V V R G+VIP V +I F Sbjct: 345 TSATLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVINKFSTG---FF 390 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C++ VV++ AH C + +ER+K+F S++ +IEG Sbjct: 391 KVPDNCPACKTAVVKEG---------AHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSD 441 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + F F+ + I D++T K+ GF D + NL +SI + Sbjct: 442 KIISFLFEKK----FIFSEIDLYT------FDFYKLLEFKGFKDRKINNLINSIEASKKK 491 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + + S+GI+ +G R L +L+ N ++ + + +L+++ +G+ I Sbjct: 492 PFSKLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKI 548 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQ 667 A I+E + + + + + +++ KK TGT R Sbjct: 549 ALNIIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIVI 608 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + GA+ + ++ D +IVG+ GSKL+KA L +KIM+ E L Sbjct: 609 DKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660 >gi|312149444|gb|ADQ29515.1| DNA ligase, NAD-dependent [Borrelia burgdorferi N40] Length = 660 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 203/712 (28%), Positives = 346/712 (48%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + ++E++ L++ I D YY S P + D YD R + +P+ Sbjct: 1 MS-SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K G ++ +V HS P LSL+K+++++ L+ +I +I +NS ++E Sbjct: 57 DSPTLKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG I + Y+ G A RG+G G DV+ +R I IP L + + +RGEV Sbjct: 111 PKIDGCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEV 168 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 YI+K +FL +N + KPY N RN ASGILRR++ ++ + + + Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEF 224 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K +++ LGF VN +R + + +++Y ++ R + Y+IDG+V KV + Sbjct: 225 KTNDLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSD 284 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+L+++LG A P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA I Sbjct: 285 FALRERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 T+ATLHN+DYI+ + + VGD V V R G+VIP V +I F Sbjct: 345 TSATLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVINKFSTG---FF 390 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C++ VV++ AH C + +ER+K+F S++ +IEG Sbjct: 391 KVPDNCPACKTAVVKEG---------AHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSD 441 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + F F+ + I D++T K+ GF D + NL +SI + Sbjct: 442 KIISFLFEKK----FIFSEIDLYT------FDFYKLLEFKGFKDRKINNLINSIEASKKK 491 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + + S+GI+ +G R L +L+ N ++ + + L+++ +G+ I Sbjct: 492 PFSKLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRYFAFSILLKIKGIGEKI 548 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQ 667 A I+E + + + + + +++ KK TGT R Sbjct: 549 ALNIIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIVI 608 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + GA+ + ++ D +IVG+ GSKL+KA L +KIM+ E L Sbjct: 609 DKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660 >gi|293363574|ref|ZP_06610330.1| DNA ligase (NAD(+)) [Mycoplasma alligatoris A21JP2] gi|292552923|gb|EFF41677.1| DNA ligase (NAD(+)) [Mycoplasma alligatoris A21JP2] Length = 660 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 187/706 (26%), Positives = 335/706 (47%), Gaps = 51/706 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + L + ++ ++ YY P + D YD + I +P+ N P Sbjct: 4 EILERYKRLIENLNKWNNEYYNLDTPSVTDEVYDQEYQELLEIESMYPEAIL---ENSPS 60 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 IGG + K H+ P LSL K ++ KF I++ ++ F LEPK+D Sbjct: 61 QIIGGFASNKFSKYKHNKPMLSLNKANINSEIEKFYQDIFKVVTDQNKG---FFLEPKVD 117 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I++ Y GK V A RGDG GEDV+ I I ++ L ++ E IE+RGEVY+SK Sbjct: 118 GLSISLHYNNGKLVRAVTRGDGVFGEDVTENILQIKSVK--LKIDFLEEIEIRGEVYLSK 175 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQ 254 +F LN + +K +ANPRNAA+G LR+L+ R L+ ++ + + Q Sbjct: 176 KNFEKLNKTFLENDQKLFANPRNAAAGTLRQLDKKIVKQRNLDVVLYEIVQPENYNISTQ 235 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 + ++ ++ LG + I+ N+ +++++TL Y+ DGLV K ++F+ Sbjct: 236 EDAIKFIKNLGLNTQKNNQLLFELSDILKAVNDFETMKNTLEYECDGLVIKYNDFTKWNL 295 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++ P++ I++K+ +QA T + ID+ +GRTG + VA +EPV++ + ++ ATLH Sbjct: 296 LGFTSKFPKYAIAYKYKAEQAITTIRQIDVSVGRTGKINYVANVEPVSLNQSTVSKATLH 355 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N DYI+ L ++ + D V++ +AGE+IPKV+ + + F C Sbjct: 356 NYDYIRDL-----------NLNINDEVVIIKAGEIIPKVISLH---KKNSLNSFEKVLNC 401 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C+S + + L C + + + +F S+ +I GLG + + Sbjct: 402 PSCKSVLETIDGN-------VDQYCLNLNCEEKIINSIIYFASKPCLDINGLGDKIVKIL 454 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 +++ I+ DI+ L + +I + F D + NL S+ + + S+ + + Sbjct: 455 YENN----IIKNIQDIYLLNNK----VEEIAKLRSFKDKKIENLLTSVEQSKGASISKVL 506 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 SLGI+++GA ++ +AK I+ + + L + +G ++I Sbjct: 507 SSLGIKNIGARASKLIAKK----------IDKLEDLYYLNLNDLEDIADIGPKSVESIKL 556 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + +N N + L + + N ++ TG L+ +R+ + Q G Sbjct: 557 YLENESNKELI-MFLDNIFTYAHDKKANNEGKLNLLSFSITGKLEH-ERNYYISAIEQNG 614 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + +++T +IVG N G SKL KA + G K++ ++F L+ Sbjct: 615 GEFHTVPTKQTSYLIVGLNAGDSKLNKALKNGTKLLTLKEFDKLIN 660 >gi|224532693|ref|ZP_03673310.1| DNA ligase, NAD-dependent [Borrelia burgdorferi WI91-23] gi|224512311|gb|EEF82695.1| DNA ligase, NAD-dependent [Borrelia burgdorferi WI91-23] Length = 660 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 202/712 (28%), Positives = 346/712 (48%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + ++E++ L++ I D YY S P + D YD R + +P+ Sbjct: 1 MS-SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K G ++ +V HS P LSL+K+++++ L+ +I +I +NS ++E Sbjct: 57 DSPTLKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG I + Y+ G A RG+G G DV+ +R I IP L + + +RGEV Sbjct: 111 PKIDGCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEV 168 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 YI+K +FL +N + KPY N RN ASGILRR++ ++ + + + Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEF 224 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K +++ LGF VN +R + + +++Y ++ R + Y+IDG+V KV + Sbjct: 225 KTNDLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSD 284 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+L+++LG A P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA I Sbjct: 285 FALRERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 T+ATLHN+DYI+ + + VGD V V R G+VIP V +I F Sbjct: 345 TSATLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVINKFSTG---FF 390 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C++ VV++ AH C + +ER+K+F S++ +IEG Sbjct: 391 KVPDNCPACKTAVVKEG---------AHFFCQNNNCPSVAVERIKYFCSKNCMDIEGFSD 441 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + F F+ + I D++T K+ GF D + NL +SI + Sbjct: 442 KIISFLFEKK----FIFSEIDLYT------FDFYKLLEFKGFKDRKINNLINSIEASKKK 491 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + + S+GI+ +G L +L+ N ++ + + +L+++ +G+ I Sbjct: 492 PFSKLLLSMGIKDLGENTIMLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKI 548 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQ 667 A I+E + + + + + +++ KK TGT R Sbjct: 549 ALNIIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIVI 608 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + GA+ + ++ D +IVG+ GSKL+KA L +KIM+ E L Sbjct: 609 DKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660 >gi|312147884|gb|ADQ30543.1| DNA ligase, NAD-dependent [Borrelia burgdorferi JD1] Length = 660 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 202/712 (28%), Positives = 346/712 (48%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + ++E++ L++ I D YY S P + D YD R + +P+ Sbjct: 1 MS-SRVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K G ++ +V HS P LSL+K+++++ L+ +I +I +NS ++E Sbjct: 57 DSPTLKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG I + Y+ G A RG+G G DV+ +R I IP L + + +RGEV Sbjct: 111 PKIDGCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEV 168 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 YI+K +FL +N + KPY N RN ASGILRR++ ++ + + + Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEF 224 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K +++ LGF VN +R + + +++Y ++ R + Y+IDG+V KV + Sbjct: 225 KTNDLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSD 284 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+L+++LG A P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA I Sbjct: 285 FALRERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 T+ATLHN+DYI+ + + VGD V V R G+VIP V +I F Sbjct: 345 TSATLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVINKFSTG---FF 390 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C++ VV++ AH C + +ER+K+F S++ +IEG Sbjct: 391 KVPDNCPACKTAVVKEG---------AHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSD 441 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + F F+ + I D++T K+ GF D + NL +SI + Sbjct: 442 KIISFLFEKK----FIFSEIDLYT------FDFYKLLEFKGFKDRKINNLINSIEASKKK 491 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + + S+GI+ +G L +L+ N ++ + + +L+++ +G+ I Sbjct: 492 PFSKLLLSMGIKDLGENTIMLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKI 548 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQ 667 A I+E + + + + + +++ KK TGT R Sbjct: 549 ALNIIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIVI 608 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + GA+ + ++ D +IVG+ GSKL+KA L +KIM+ E L Sbjct: 609 DKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660 >gi|226321858|ref|ZP_03797384.1| DNA ligase, NAD-dependent [Borrelia burgdorferi Bol26] gi|226233047|gb|EEH31800.1| DNA ligase, NAD-dependent [Borrelia burgdorferi Bol26] Length = 660 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 202/712 (28%), Positives = 346/712 (48%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + ++E++ L++ I D YY S P + D YD R + +P+ Sbjct: 1 MS-SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K G ++ +V HS P LSL+K+++++ L+ +I +I +NS ++E Sbjct: 57 DSPTLKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG I + Y+ G A RG+G G DV+ +R I IP L + + +RGEV Sbjct: 111 PKIDGCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEV 168 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 YI+K +FL +N + KPY N RN ASGILRR++ ++ + + + Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEF 224 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K +++ LGF VN +R + + +++Y ++ R + Y+IDG+V KV + Sbjct: 225 KTNDLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSD 284 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+L+++LG A P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA I Sbjct: 285 FALRERLGYTAHHPKWAMAYKFEALSDFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 T+ATLHN+DYI+ + + VGD V V R G+VIP V +I F Sbjct: 345 TSATLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVINKFSTG---FF 390 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C++ VV++ AH C + +ER+K+F S++ +IEG Sbjct: 391 KVPDNCPACKTAVVKEG---------AHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSD 441 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + F F+ + I D++T K+ GF D + NL +SI + Sbjct: 442 KIISFLFEKK----FIFSEIDLYT------FDFYKLLEFKGFKDRKINNLINSIEASKKK 491 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + + S+GI+ +G L +L+ N ++ + + +L+++ +G+ I Sbjct: 492 PFSKLLLSMGIKDLGENTIMLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKI 548 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQ 667 A I+E + + + + + +++ KK TGT R Sbjct: 549 ALNIIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIVI 608 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + GA+ + ++ D +IVG+ GSKL+KA L +KIM+ E L Sbjct: 609 DKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660 >gi|21231024|ref|NP_636941.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768971|ref|YP_243733.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv. campestris str. 8004] gi|188992085|ref|YP_001904095.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv. campestris str. B100] gi|81305065|sp|Q4UTB0|DNLJ_XANC8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|81794799|sp|Q8PAB5|DNLJ_XANCP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254782312|sp|B0RUY2|DNLJ_XANCB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|21112648|gb|AAM40865.1| DNA ligase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574303|gb|AAY49713.1| DNA ligase [Xanthomonas campestris pv. campestris str. 8004] gi|167733845|emb|CAP52051.1| DNA ligase (NAD(+)) [Xanthomonas campestris pv. campestris] Length = 833 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 212/685 (30%), Positives = 336/685 (49%), Gaps = 82/685 (11%) Query: 12 LSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ++ + + +L Q I + Y+ +P I D EYD L R +A+ A P+LA + Sbjct: 1 MTASPDPAQRIDALRQRIEDANYRYHVLDEPQIADVEYDRLLRELEALEAAHPELATA-- 58 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G +V H +P LSL ++ E++ +F+ RI ++K F Sbjct: 59 -DSPTQRVGYLAASRFAEVRHVLPMLSLGNAFSDEEVAEFVRRISERLERK---QPVFCA 114 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189 EPK+DG I++RYE+G+FV A RGDG +GEDVSA +R + IP L PE++EVRG Sbjct: 115 EPKLDGLAISLRYEQGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGTGWPEVLEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT-S 247 EVY+ + F A N +M G K ANPRN A+G LR+L+ R L+FF +G+G+ Sbjct: 175 EVYMPRAAFEAYNAQMRLQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVAD 234 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 ML ++R GFPV+ V G+++YY + R LP+DIDG+VYK+D Sbjct: 235 GALPPTHSTMLAQLREWGFPVSQLVEVVQGSEGLLTYYRRIGEARDGLPFDIDGVVYKLD 294 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + Q+++G +R+PRW ++HKF ++ ST + I+IQIGRTG TPVARL+PV++ G + Sbjct: 295 DLAGQREMGFVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVV 354 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +TNATLHN D I L D+RVGD V+V+RAG+VIP+V ++ +R Sbjct: 355 VTNATLHNADQIARL-----------DVRVGDTVIVRRAGDVIPEVAGVVAEQRPAGTHA 403 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + P+ CP+C S +VR+ A RC+G L C AQ+ E +HFVSR A +++GLG Sbjct: 404 WQMPTQCPVCGSEIVREEG------QAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLG 457 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ ++ S ++ AD++ L Q I Sbjct: 458 EKFIEVLVDS----GVVQGVADLYLLNVDQLLQLRLISTADSPHAFLREAREHLAAGAYA 513 Query: 548 ISLERFIFSLGIRHVGAEIA--------------------RSLAKYY------------- 574 +E+ + +G+ G + A + +A + Sbjct: 514 Q-VEQTMVGIGVDLAGVQPAPQTWQADLLRAGLPAFDWNRKKIATKWAENLIEAIETSRD 572 Query: 575 -----------------LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 + + + + + W RVP +G +A+++ F+ Sbjct: 573 TTLERFLFALGIEHVGESTAKALSAWFGELDVIRHLPWPLFKRVPDIGGEVARSLGHFFD 632 Query: 618 NPRNICAVEALLKEVSPSIGRHEKN 642 N A++ LL+ H + Sbjct: 633 QAGNQQAIDDLLQRGVRIGDAHPPS 657 Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 22/183 (12%) Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 + L I V A+ LA S+ + D L VP +IA Sbjct: 666 FAVLLEDLDIPKVTPVRAQQLAAATASFDALI--------ASEADPLLQAGVP--APVIA 715 Query: 610 QAIVEFYQNPRNICA-------VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 ++ ++ P N ++ALL ++ + + + ++ + +V TGTL + Sbjct: 716 -SLQQWLARPENAALATAAQRAMDALLAQL----PQADAVQAGPLDGQTVVITGTLAALT 770 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 R A++ + LGA V+ +S+KT ++ G+ GSKL+KAQ LGV+I +E + L L ++ Sbjct: 771 RDAAKQRLESLGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLSEHG 830 Query: 723 TTL 725 + Sbjct: 831 QAV 833 >gi|291525249|emb|CBK90836.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Eubacterium rectale DSM 17629] gi|291529292|emb|CBK94878.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Eubacterium rectale M104/1] Length = 656 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 165/711 (23%), Positives = 288/711 (40%), Gaps = 63/711 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + + ++ L + ++ YY + I+ + E+DA+ + Sbjct: 1 MENNKIKDKIDELVESLNRASKAYYNGADEIMPNYEWDAMFDELTQLEKE----TGYIRH 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P G E + H P LSL K +IE+L+K+ + L Sbjct: 57 DSPTQNAGYEAEAG-NREPHEYPALSLAKTKSIEELKKWA------------GDMPIWLS 103 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG + + Y+ G+ V RG+G G +++ AI P + + VRGE Sbjct: 104 WKLDGLTLVLTYDGGRLVKILTRGNGTVGSNITFLQDAISGFP--KEIPYKGHMVVRGEA 161 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 IS DF LND + YANPRN ASG L + + R++ F+ L + Sbjct: 162 TISYTDFKLLNDTIEDDDE-KYANPRNLASGTLNLDDVEEVKRRHVVFYAFTLVHIDDDI 220 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 M V A V + + +DGLV D+ + Sbjct: 221 ISWGDRMSYLSDMKFNVVKREATDAAGLDEAVKRWTR-DVESGRMDVPVDGLVICYDDTA 279 Query: 311 LQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 R + K+ ++ TRL I+ + ++PVA EPV I G ++ Sbjct: 280 YAAGGSVTGHHATRAGFAFKWQDEAVDTRLRYIEWSCAVST-ISPVAVFEPVQIEGTTVS 338 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+L N I+ L + + V +A ++IPK + + Sbjct: 339 RASLCNLTEIERL-----------GVGKECTLSVIKANKIIPKCIAVKDAV-----GAVE 382 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP+C ++ +G V CT C+A+ +++ FVS+ +I+GL Q Sbjct: 383 IPKECPVCHHPTRIFVSKNSG--VKTLHCTNP-DCTAKNVKKFSRFVSKSGMDIDGLSVQ 439 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F I+ DI+ L KI ++ GFG+ S N+ +I K R++ Sbjct: 440 TMLKFINE----GFIKQFPDIYHLPEH----FDKISSMEGFGEKSCMNMQTAIEKSRHVH 491 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 IF+L I +G + + + + FA + N + + +G + Sbjct: 492 PVNLIFALCIPLIGTDAGKKIVNAIG-FDGFADRMRNAT--------DFVDIDGIGQEKS 542 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQE 668 +I+E+Y NP+N EAL+KE+ + + K V TG + R + + Sbjct: 543 GSILEWYANPKNSAMFEALIKELDIEKVDIKDMSEGSLNGKTFVITGDVHDFANRSEFKA 602 Query: 669 YVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFL 717 YV G V+ +S+KTD ++ ++ SK +KA++LG+ I++E+ F+ + Sbjct: 603 YVESQGGKVTGSVSKKTDYLVNNDTESTSSKNKKAKELGIPIISEDTFIEM 653 >gi|218249478|ref|YP_002375058.1| DNA ligase, NAD-dependent [Borrelia burgdorferi ZS7] gi|254781261|sp|B7J2B3|DNLJ_BORBZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218164666|gb|ACK74727.1| DNA ligase, NAD-dependent [Borrelia burgdorferi ZS7] Length = 660 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 202/712 (28%), Positives = 346/712 (48%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + ++E++ L++ I D YY S P + D YD R + +P+ Sbjct: 1 MS-SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K G ++ +V HS P LSL+K+++++ L+ +I +I +NS ++E Sbjct: 57 DSPTLKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG I + Y+ G A RG+G G DV+ +R I IP L + + +RGEV Sbjct: 111 PKIDGCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEV 168 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 YI+K +FL +N + KPY N RN ASGILRR++ ++ + + + Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEF 224 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K +++ LGF VN +R + + +++Y ++ R + Y+IDG+V KV + Sbjct: 225 KTNDLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADIIKKRDSFEYEIDGVVLKVSD 284 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+L+++LG A P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA I Sbjct: 285 FALRERLGYTAHHPKWAMAYKFEALSDFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 T+ATLHN+DYI+ + + VGD V V R G+VIP V +I F Sbjct: 345 TSATLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVINKFSTG---FF 390 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C++ VV++ AH C + +ER+K+F S++ +IEG Sbjct: 391 KVPDNCPACKTAVVKEG---------AHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSD 441 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + F F+ + I D++T K+ GF D + NL +SI + Sbjct: 442 KIISFLFEKK----FIFSEIDLYT------FDFYKLLEFKGFKDRKINNLINSIEASKKK 491 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + + S+GI+ +G L +L+ N ++ + + +L+++ +G+ I Sbjct: 492 PFSKLLLSMGIKDLGENTIMLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKI 548 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQ 667 A I+E + + + + + +++ KK TGT R Sbjct: 549 ALNIIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIVI 608 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + GA+ + ++ D +IVG+ GSKL+KA L +KIM+ E L Sbjct: 609 DKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660 >gi|51598803|ref|YP_072991.1| NAD-dependent DNA ligase LigA [Borrelia garinii PBi] gi|81609923|sp|Q660X2|DNLJ_BORGA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|51573374|gb|AAU07399.1| DNA ligase [Borrelia garinii PBi] Length = 660 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 209/713 (29%), Positives = 350/713 (49%), Gaps = 58/713 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +SI + ++E+ L++ I D YY S P + D YD R + P+ Sbjct: 1 MSI-KIQQEIEDLKKLIRKWDKEYYVDSLPSVEDFVYDNHILRLKELESRHPEYKTL--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K G ++ + +V HS+P LSL+K+++++ L+ +I +I +NS ++E Sbjct: 57 DSPTLKFGSDLLNNFEEVEHSVPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG I + Y+ G A RG+G G DV+ IR I IP L + + +RGEV Sbjct: 111 PKIDGCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHIPLFLDEKV--DLVLRGEV 168 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 YI+K +F +N + KPY + RN ASGILRR++ ++ + +E+ Sbjct: 169 YITKENFFKINKFL----EKPYTSSRNLASGILRRVDSREVANFPLNIFIYDFLNAELEL 224 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K + K++ LGF V+ +R + +++Y ++ R++ Y+IDG+V KV E Sbjct: 225 KTNDLAIAKLKKLGFKVDPLIRFFDQKSSIIEVLNYIADITKKRNSFEYEIDGVVLKVSE 284 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F L+++LG + P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA I Sbjct: 285 FVLREKLGYTSHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 TNATLHN+DYI + + VGD V V R G+VIP V +I F Sbjct: 345 TNATLHNQDYIISI-----------GLNVGDVVKVSRRGDVIPAVEMVINKCSKG---VF 390 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C++ +V++ AH +C + +ER+K+F S++ +IEG Sbjct: 391 KVPDNCPACKTVLVKEG---------AHFFCTNNSCPSVAVERIKYFCSKNCMDIEGFSD 441 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + F F+ E I D++T + K+ GF D V NL +SI + Sbjct: 442 KTISFLFEKE----FISSEIDLYT------FNFYKLLKFKGFKDRKVYNLINSIEASKKK 491 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + + S+GI+ +G R L +L+ N ++ + N + +L+++ +G+ I Sbjct: 492 PFSKLLLSIGIKELGENAIRLL---FLNNLNSFSKLFRLCQDRNFAFSTLLKIKGIGEKI 548 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKA 666 A I+E + + + + + + + + + KK TGT R Sbjct: 549 ALNIIEAFNDSTMLNKF-KFFENLGFKMEESILIDDENRLLAGKKFCITGTFNGYSRSII 607 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + GA+ ++ D +IVG+ GSKLEKA L VKIM+ E L Sbjct: 608 IDKLKNKGAIFKTCVTEGLDFLIVGEKAGSKLEKALNLNVKIMSFEDIKSYLN 660 >gi|325915467|ref|ZP_08177781.1| DNA ligase, NAD-dependent [Xanthomonas vesicatoria ATCC 35937] gi|325538349|gb|EGD10031.1| DNA ligase, NAD-dependent [Xanthomonas vesicatoria ATCC 35937] Length = 833 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 209/684 (30%), Positives = 337/684 (49%), Gaps = 80/684 (11%) Query: 12 LSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 +++ + + +L + I + Y+ +P + D +YD L R +A+ P LA + Sbjct: 1 MTVSPDPAQRIDALRRRIEDANYRYHVLDEPQMADVDYDRLMRELEALEAEHPALATA-- 58 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G +V H++P LSL ++ E++ +F+ RI + K F+ Sbjct: 59 -DSPTQRVGHLAASRFAEVRHALPMLSLGNAFSDEEVSEFVRRISERLEVK---QPVFSA 114 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189 EPK+DG I++RYE G+FV A RGDG +GEDVSA +R + IP L P+++EVRG Sbjct: 115 EPKLDGLAISLRYEDGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGQGWPKVLEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT-S 247 EVY+ + F A N M A G K ANPRN A+G LR+L+ R L+FF +G+G+ + Sbjct: 175 EVYMPRAAFEAYNAHMRAQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVGN 234 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + +L ++R GFPV+ V G+++YY + + R L +DIDG+VYK+D Sbjct: 235 GALPQTHSAILAQLRDWGFPVSQLVEVVQGSDGLLAYYQRIGAARDGLAFDIDGVVYKLD 294 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + Q+++G +R+PRW I+HKF ++ ST + I+IQIGRTG TPVARL+PV++ G + Sbjct: 295 DLAGQREMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVI 354 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +TNATLHN D I L D+RVGD V+V+RAG+VIP+V ++ ++R P Q Sbjct: 355 VTNATLHNADQIARL-----------DVRVGDTVIVRRAGDVIPEVAGVVADQRQPGTQE 403 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + P+ CP+C S +VR+ A RC+G L C AQ+ E +HFVSR A +++GLG Sbjct: 404 WRMPTHCPVCGSEIVREEG------QAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLG 457 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ ++ S ++ AD++ L Q I Sbjct: 458 EKFIEVLVDS----GLVQGVADLYLLTVDQLLQLRLISTADSPHAFLREAREHLATGAYA 513 Query: 548 ISLERFI---------------------------FSLGIRHVGAEIARSLAKYYL----- 575 + F R + + A +L + Sbjct: 514 QLEATMMRIGVDLAGEHEAPQTWQADLLRAGLPSFDWNRRKIATKWAENLIEAIETSRNT 573 Query: 576 -----------------SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 + + + ++ + W RVP +G +A+++ F+ Sbjct: 574 TLERFLFALGIEHVGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQ 633 Query: 619 PRNICAVEALLKEVSPSIGRHEKN 642 P N A++ LL+ H + Sbjct: 634 PGNQQAIDDLLQRGVRIGDAHPPS 657 Score = 164 bits (414), Expect = 5e-38, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 16/177 (9%) Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE-INNIIAHNNDDWLSLIRVPLVGDII 608 + + I V A+ LA S+ + ++ ++ Sbjct: 666 FASVLEDMDIPKVTPVRAQQLAAAVPSFDALRDAGSDALLQAGVPA-----------PVV 714 Query: 609 AQAIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A A++++ P N + ++ V + E + ++ + +V TGTL + R Sbjct: 715 A-ALLQWLDRPENAALATSAQRAMETVLARLPEAEAVQAGPLDGQTVVITGTLTALTRDA 773 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A++ + LGA V+ +S+KT ++ G+ GSKL+KAQ LGV+I +E + L L ++ Sbjct: 774 AKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLAEHG 830 >gi|224533503|ref|ZP_03674092.1| DNA ligase, NAD-dependent [Borrelia burgdorferi CA-11.2a] gi|224513176|gb|EEF83538.1| DNA ligase, NAD-dependent [Borrelia burgdorferi CA-11.2a] Length = 660 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 201/712 (28%), Positives = 345/712 (48%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + ++E++ L++ I D YY S P + D YD R + +P+ Sbjct: 1 MS-SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K G ++ +V HS P LSL+K+++++ L+ +I +I +NS ++E Sbjct: 57 DSPTLKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG I + Y+ G A RG+G G DV+ +R I IP L + + +RGEV Sbjct: 111 PKIDGCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEV 168 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 YI+K +FL +N + KPY N RN ASGILRR++ ++ + + + Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEF 224 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K +++ LGF VN +R + + +++Y ++ R + Y+IDG+V KV + Sbjct: 225 KTNDLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSD 284 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+L+++LG A P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA I Sbjct: 285 FALRERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 T+ATLHN+DYI+ + + VGD V V R G+VIP V +I F Sbjct: 345 TSATLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVINKFSTG---FF 390 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C++ VV++ AH C + +ER+K+F S++ +IEG Sbjct: 391 KVPDNCPACKTAVVKEG---------AHFFCQNNNCPSVAVERIKYFCSKNCMDIEGFSD 441 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + F F+ + I D++T K+ GF D + NL +SI + Sbjct: 442 KIISFLFEKK----FIFSEIDLYT------FDFYKLLEFKGFKDRKINNLINSIEASKKK 491 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + + S+GI+ +G L + + N ++ + + +L+++ +G+ I Sbjct: 492 PFSKLLLSMGIKDLGENTIMLL---FFNNFNSFSKLFKLCQDRYFAFSTLLKIKGIGEKI 548 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQ 667 A I+E + + + + + +++ KK TGT R Sbjct: 549 ALNIIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIVI 608 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + GA+ + ++ D +IVG+ GSKL+KA L +KIM+ E L Sbjct: 609 DKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660 >gi|294665962|ref|ZP_06731226.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604265|gb|EFF47652.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 833 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 218/685 (31%), Positives = 343/685 (50%), Gaps = 82/685 (11%) Query: 12 LSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 +++ + + +L + I + Y+ +P + D++YD L R +A+ A P+LA Sbjct: 1 MTVSPDPAQRIDALRRRIEDANYRYHVLDEPQMADADYDKLMRELEALERAHPELA---S 57 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G +V H++P LSL ++ E++ +F+ RI + K F+ Sbjct: 58 ADSPTQRVGHLAASRFAEVRHALPMLSLGNAFSDEEVAEFVRRIGERLEVK---QPLFSA 114 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189 EPK+DG I++RYE G+FV A RGDG +GEDVSA +R + IP L P+++EVRG Sbjct: 115 EPKLDGLAISLRYENGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPQVLEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE 248 EVY+ + F A N +M A G K ANPRN A+G LR+L+ R L+FF +G+G+ SE Sbjct: 175 EVYMPRAAFEAYNAQMRAQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSE 234 Query: 249 -IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + +L ++R GFPV+ V G+++YY + R L +DIDG+VYK+D Sbjct: 235 GALPQTHSAILAQLRAWGFPVSALVEVVQGSDGLLAYYQRIGEARDGLAFDIDGVVYKLD 294 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + Q+++G +R+PRW I+HKF ++ ST + I+IQIGRTG TPVARL+PV++ G + Sbjct: 295 DLAGQREMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVI 354 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +TNATLHN D I L D+RVGD V+V+RAG+VIP+V ++ ++R P Q Sbjct: 355 VTNATLHNADQIARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQA 403 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + P+ CP+C S +VR+ A RC+G L C AQ+ E +HFVSR A +++GLG Sbjct: 404 WQMPTQCPVCGSEIVREEG------QAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLG 457 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ ++ S ++ AD++ L Q I + Sbjct: 458 EKFIEVLVDS----GLVKGVADLYLLSVDQLLQLRLISTADSPHAFLREAREHLASGAYA 513 Query: 548 ISLERFIFSLGIRHVGAE------IARSLAKYYLSYQ------------NFAQEINNIIA 589 LE + +G+ G A L S+ N + I Sbjct: 514 Q-LEASVVGIGVDLAGERDVPQTWQADLLRAGLPSFDWNRKKIATKWAENLIEAIETSRD 572 Query: 590 HNNDDW-----------------------LSLI---------RVPLVGDIIAQAIVEFYQ 617 + + L LI RVP +G +A+++ F+ Sbjct: 573 TTLERFLFALGIEHVGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFD 632 Query: 618 NPRNICAVEALLKEVSPSIGRHEKN 642 N A++ LL+ H + Sbjct: 633 QAGNQQAIDDLLQRGVRIGDTHPPS 657 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 6/149 (4%) Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLV-GDIIAQAIVEFYQNPRNICAVEAL---LKEVS 633 Q A +++ A +L + V ++A ++++ P N A ++ V Sbjct: 684 QQLAAAVDSFAALRTAGADALQQ-AGVPAPVVAT-LLQWLDRPENAALASAAQQAMETVL 741 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 + + + ++ + +V TGTL + R A++ + LGA V+ +S+KT ++ G+ Sbjct: 742 ARLPEADALQTGPLDGQTVVITGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEE 801 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 GSKL+KAQ LGV+I +E + L L + Sbjct: 802 AGSKLDKAQSLGVEIWDEARLLVFLGDHG 830 >gi|254420802|ref|ZP_05034526.1| DNA ligase, NAD-dependent [Brevundimonas sp. BAL3] gi|196186979|gb|EDX81955.1| DNA ligase, NAD-dependent [Brevundimonas sp. BAL3] Length = 776 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 255/608 (41%), Positives = 359/608 (59%), Gaps = 29/608 (4%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 P+E L+ E A +EL+ L E++ HD Y + P I D++YDAL+ R AI AFP Sbjct: 6 PPFPPVEDLTAETAAEELAWLAAEMARHDALY-NEATPEISDADYDALRARNLAIETAFP 64 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 DL R P+ P +K+G ++ +V H +P LSL+ ++ ++R F+ RI RF + D Sbjct: 65 DLVR---PDSPSHKVGAAVSSQFAEVRHGVPMLSLDNAFDEGEVRDFVARIARFLKLPSD 121 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIP 182 I F EPKIDG + Y G+ A RGDG +GEDV+A + I + + L+ + P Sbjct: 122 EPIAFVAEPKIDGLSANLLYVDGRLTLGATRGDGRTGEDVTANLNTIADVKQTLAGDDWP 181 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVH 241 + IE+RGEVY F A N A GR+ YANPRN A+G LR+ + + NFF + Sbjct: 182 DRIEIRGEVYAPNAAFAAFNAAAEAEGRRTYANPRNFAAGSLRQKDARITGKRPLNFFAY 241 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G+ S FA+ Q+E LQK++ GFPVN R+ G+++ Y E++ R+TL YDIDG Sbjct: 242 AWGEHSSDFAETQWEALQKLKAWGFPVNARSRRVEGAEGLIAVYRELERDRATLGYDIDG 301 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYKVD Q++LG ARSPRW I+HKF +QA+T L IDIQ+GRTG LTPVARL PV Sbjct: 302 VVYKVDRLDWQRRLGFVARSPRWAIAHKFPAQQATTVLEGIDIQVGRTGSLTPVARLHPV 361 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 +GG ++ NATLHNED I+ L D+R+GD V ++RAG+VIP+++ ++ + R Sbjct: 362 TVGGVVVRNATLHNEDEIERL-----------DVRIGDTVRLQRAGDVIPQILGVVPDLR 410 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 DA P+ FP CP+C S VR+ + RCTGGL C AQ +ERLKHFV R AF Sbjct: 411 PADAVPYVFPDKCPVCGSEAVREGDE------VKRRCTGGLICDAQIVERLKHFVGRRAF 464 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +IEGLG++QL F I+ PADIF L R + ++E G+G+ S+ NL Sbjct: 465 DIEGLGEKQLAAFNAR----GWIKEPADIFRL-ARDEARLKELEREDGYGETSIRNLVAG 519 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE-INNIIAHNNDDWLSLIR 600 I+ RR ISL+RF+F LGIR +G + + LA+ + S+ + +D W +L Sbjct: 520 IDARRVISLDRFLFGLGIRDIGEQTSIVLARAFESWPALKAACLQAASGVPSDAWTALAG 579 Query: 601 VPLVGDII 608 + + Sbjct: 580 AHAISPRV 587 Score = 198 bits (502), Expect = 3e-48, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 1/164 (0%) Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 S + A RSLA + + ++ + V VG + A A+ Sbjct: 612 SQAFPGMAAPARRSLATMTGDWSGLVELARVAREEGPSEILNQIAGVTGVGPVAALALAH 671 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F+ P N+ V AL E++ + + + K +VFTG L++ R +A+ LG Sbjct: 672 FFHEPHNLQVVAALEAELTQILDAERPKSDTPVAGKTVVFTGALERFTRDEAKARAESLG 731 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A VS +S+KTD ++ G GSKL+ A++ GV+++ E+++L L+ Sbjct: 732 AKVSGSVSKKTDYLVAGPGAGSKLKDAEKHGVQVLTEDEWLALI 775 >gi|224531714|ref|ZP_03672346.1| DNA ligase, NAD-dependent [Borrelia valaisiana VS116] gi|224511179|gb|EEF81585.1| DNA ligase, NAD-dependent [Borrelia valaisiana VS116] Length = 660 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 202/713 (28%), Positives = 350/713 (49%), Gaps = 58/713 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + ++E++ L++ I D YY S P + D YD R + +P+ Sbjct: 1 MS-SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFIYDKHILRLQELESKYPEYKTL--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K G ++ +V HS+P LSL+K++++ L+ +I +I ++S ++E Sbjct: 57 DSPTLKFGSDLLNDFEEVEHSVPILSLDKVYDLNLLKTWIDKI------DFNDSFNISVE 110 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG I + Y+ G A RG+G G DV+ ++ I IP L + + +RGEV Sbjct: 111 PKIDGCSIVLYYKGGILEKALTRGNGKFGNDVTKNVKTIRYIPLFLDEEV--DLVLRGEV 168 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 YI+K +F +N + KPY+N RN ASGILRR++ ++ + + + Sbjct: 169 YITKENFFKINKFL----EKPYSNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEF 224 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANT---FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K +++ LGF VN +R + ++SY ++ R++ Y+IDG+V KV + Sbjct: 225 KTNNLATARLKKLGFKVNPLIRFFDQKSSIKEVLSYIADITKKRNSFEYEIDGVVLKVSD 284 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 FSL+++LG + P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA I Sbjct: 285 FSLRERLGYTSHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 TNATLHN+DYI + D+ VGD V V R G+VIP V +I F Sbjct: 345 TNATLHNQDYIMSI-----------DLNVGDVVKVSRRGDVIPAVEMVINKFSTG---FF 390 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C++ +V++ AH C + +ER+K+F S++ +IEG Sbjct: 391 KIPENCPACKTVLVKEG---------AHFFCTNNNCPSVVIERIKYFCSKNCMDIEGFSD 441 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + F F+ + I D++ + K+ GF V+NL +SI + Sbjct: 442 KIISFLFEKK----FISSEIDLY------IFNFCKLFEFKGFKGKRVSNLINSIEASKKK 491 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + + S+GI+ +G R L +L+ N ++ ++ + + +L+++ +G+ I Sbjct: 492 PFSKLLLSMGIKELGENTIRLL---FLNNLNSFSKLFSLCQDKDFAFSTLLKIKGIGEKI 548 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A I+E + + I + + + S + +KK TGT R Sbjct: 549 ALNIIEAFNDSIMINKF-KFFENLEFKMEECIVIDGESRLLADKKFCITGTFDGYSRPII 607 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + GA+ A +++ D ++ G+ GSKL+KA L +KIM+ E L Sbjct: 608 IDKLKNKGAIFKACVTKDLDFLVAGEKAGSKLKKALNLNIKIMSFEDIKSYLD 660 >gi|269794376|ref|YP_003313831.1| DNA ligase, NAD-dependent [Sanguibacter keddieii DSM 10542] gi|269096561|gb|ACZ20997.1| DNA ligase, NAD-dependent [Sanguibacter keddieii DSM 10542] Length = 871 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 190/650 (29%), Positives = 301/650 (46%), Gaps = 78/650 (12%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + AR + L + I H YY P + D+EYD L R I A P L P+ Sbjct: 41 LSAARTRWAELAETIEAHQFAYYVRDAPTVSDAEYDTLLRELGDIEEAHPQL---RTPDS 97 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + V H LSL+ +N EDL + R++R + + + E K Sbjct: 98 PTQRVGGTFSTDFAAVDHREQMLSLDNAFNAEDLDAWAERVHREIG---TSQVHYLCEVK 154 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVRGE 190 IDG I + YEKG+ V AA RGDG +GEDV+ + I IP+ L ++ E+ IE+RGE Sbjct: 155 IDGLAIALLYEKGRLVRAATRGDGRTGEDVTLNVLTIEGIPKALDASVREVPDLIEIRGE 214 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V++ + F ALN+ +A G+ P+ANPRNAA+G LR+ NP R L + HG+G Sbjct: 215 VFMLVDQFAALNEAQVAAGKPPFANPRNAAAGSLRQKNPKITAGRPLRMYAHGVGALHWE 274 Query: 250 -----FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + Q + R G PV++ R G+ + R + +++DG+V Sbjct: 275 AGTPSELRRQSDAYDYFRAWGVPVSDHNRVVEGMPGVQEMIDYYGDHRHDIEHELDGIVV 334 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVDE +LQ+QLG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP +EPV + Sbjct: 335 KVDELALQRQLGATSRAPRWAIAYKYPPEEVNTTLLDILVNVGRTGRVTPFGMMEPVLVA 394 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G+ ++ ATLHN ++ + + +GD V++++AG+VIP++V +V+ R Sbjct: 395 GSTVSMATLHNGSEVRR-----------KGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGS 443 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + F P+ CP C + + + RC +C +Q ER+ H R AF+IE Sbjct: 444 EREFVMPTECPSCGTTLA-----PAKEGDVDIRCPNQRSCPSQLRERVFHLAGRGAFDIE 498 Query: 485 GLGKQQLDFFFKSED--------------------PAFSIRIPAD------IFTLQRRQQ 518 +G + E A D ++ +++ Sbjct: 499 AMGWEAAIALVDPEHNRPESADAEGVPVQVPVLETEAGFFDFEVDALADVLVWREKKKAG 558 Query: 519 TSTTKIENILGFGDV-----------SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567 T E + F + ++ K + L R + +L IRHVG A Sbjct: 559 VGTGVWEQVPFFWTKATAKTPSKPSATTVKFFEEREKAKARPLWRVLVALSIRHVGPTAA 618 Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 R+LA + S + L VG IA+A+ ++ Sbjct: 619 RALATAFESVEAIMAATE----------EELAATEGVGPTIARAVRIWFN 658 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 2/115 (1%) Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 + ++ ++++ +E +V TG+L+ R + +E + G + Sbjct: 738 DWHREIIDRWRAAGVRMRDERDESIVRTLEGFTVVVTGSLEGFNRDQVKEAIIVRGGKAA 797 Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY--NTTLRIHDDD 731 +S+KTD ++VG+N GSK KA++LG+ I++E F+ LL + + DDD Sbjct: 798 GSVSKKTDFVVVGENAGSKEAKARELGLTILDEAGFVTLLAEGPPAAAEPLLDDD 852 >gi|111115379|ref|YP_709997.1| DNA ligase [Borrelia afzelii PKo] gi|123145685|sp|Q0SMV7|DNLJ_BORAP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110890653|gb|ABH01821.1| DNA ligase [Borrelia afzelii PKo] Length = 660 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 205/712 (28%), Positives = 351/712 (49%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + ++E++ L++ I D YY S P + D YD R + P+ Sbjct: 1 MS-SKIQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKCPEYKTL--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K G ++ +V HS+P LSL+K++N++ L+ +I +I NS ++E Sbjct: 57 DSPTLKFGSDLLNDFKEVEHSVPVLSLDKVYNLDLLKSWIDKI------DFSNSFNISVE 110 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG I + Y+ G A RG+G G DV+ IR I +P L + + +RGEV Sbjct: 111 PKIDGCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHVPLFLGEKV--DLVLRGEV 168 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 YI+K +FL +N + KPY N RN ASGILRR++ ++ + + + Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLDF 224 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANT---FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K ++K++ LGF VN +R + +++Y ++ R++ Y+IDG+V KV + Sbjct: 225 KTNNLAIEKLKKLGFKVNPLIRFFDQKSSIKEVLNYIADITKKRNSFEYEIDGVVLKVSD 284 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+L+++LG P+W +++KF +++ I +Q+GR+G +TPVA ++ V + GA I Sbjct: 285 FALREKLGYTLHHPKWAMAYKFEALSGFSKVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 TNATLHN+DYI + ++ VGD V V R G+VIP V +I F Sbjct: 345 TNATLHNQDYITSI-----------NLNVGDIVKVSRRGDVIPAVEMVINKFSTG---FF 390 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C++ VV++ AH C + +ER+K+F S++ +IEG Sbjct: 391 KVPDKCPSCKTVVVKEG---------AHFFCTNNNCPSVAVERIKYFCSKNCMDIEGFSD 441 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + F F+ + I D++T + K+ GF D + NL +SI + Sbjct: 442 KTISFLFEKK----FISSEIDLYT------FNFYKLLKFKGFKDRKINNLINSIEASKKK 491 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + + S+GI+ +G R L +L+ N ++ + + +L+L+++ +G+ I Sbjct: 492 PFSKLLLSIGIKELGENTIRLL---FLNNLNSFSKLFRLCQDRDFAFLTLLKIKGIGEKI 548 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQ 667 A I++ + N I + R + +++ KK TG+ R Sbjct: 549 ALNIIDAFNNSIMINKFKVFENLGFKMEERILIDDENKLLVGKKFCITGSFNGYSRPIVI 608 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + GA+ +++ D ++VG+ G+KL+KA L VKIM+ E L Sbjct: 609 DKLENKGAIFKTCVTKGLDFLVVGEKAGTKLKKALNLNVKIMSFEDIKSYLD 660 >gi|294626370|ref|ZP_06704972.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599371|gb|EFF43506.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 833 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 218/677 (32%), Positives = 340/677 (50%), Gaps = 81/677 (11%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + +L + I + Y+ +P + D++YD L R +A+ A P+LA + P ++ Sbjct: 9 QRIDALRRRIEDANYRYHVLDEPQMADADYDKLMRELEALERAHPELA---SADSPTQRV 65 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G +V H++P LSL ++ E++ +F+ RI + K F+ EPK+DG Sbjct: 66 GHLAASRFAEVRHALPMLSLGNAFSDEEVAEFVRRIGERLEVK---QPLFSAEPKLDGLA 122 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKND 197 I++RYE G+FV A RGDG +GEDVSA +R + IP L P+++EVRGEVY+ + Sbjct: 123 ISLRYENGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPQVLEVRGEVYMPRAA 182 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE-IFAKGQY 255 F A N +M A G K ANPRN A+G LR+L+ R L+FF +G+G+ SE + Sbjct: 183 FEAYNAQMRAQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGALPQTHS 242 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 +L ++R GFPV+ V G+++YY + R L +DIDG+VYK+D+ + Q+++ Sbjct: 243 AILAQLRAWGFPVSALVEVVQGSDGLLAYYQRIGEARDGLAFDIDGVVYKLDDLAGQREM 302 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +R+PRW I+HKF ++ ST + I+IQIGRTG TPVARL+PV++ G ++TNATLHN Sbjct: 303 GFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHN 362 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I L D+RVGD V+V+RAG+VIP+V ++ ++R P Q + P+ CP Sbjct: 363 ADQIARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCP 411 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C S +VR+ A RC+G L C AQ+ E +HFVSR A +++GLG++ ++ Sbjct: 412 VCGSEIVREEG------QAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLV 465 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 S ++ AD++ L Q I + LE + Sbjct: 466 DS----GLVKGVADLYLLSVDQLLQLRLISTADSPHAFLREAREHLASGAYAQ-LEASVV 520 Query: 556 SLGIRHVGAE------IARSLAKYYLSYQ------------NFAQEINNIIAHNNDDW-- 595 +G+ G A L S+ N + I + + Sbjct: 521 GIGVDLAGERDVPQTWQADLLRAGLPSFDWNRKKIATKWAENLIEAIETSRDTTLERFLF 580 Query: 596 ---------------------LSLI---------RVPLVGDIIAQAIVEFYQNPRNICAV 625 L LI RVP +G +A+++ F+ N A+ Sbjct: 581 ALGIEHVGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGNQQAI 640 Query: 626 EALLKEVSPSIGRHEKN 642 + LL+ H + Sbjct: 641 DDLLQRGVRIGDTHPPS 657 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 6/149 (4%) Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLV-GDIIAQAIVEFYQNPRNICAVEAL---LKEVS 633 Q A +++ A +L + V ++A ++++ P N A ++ V Sbjct: 684 QQLAAAVDSFAALRTAGADALQQ-AGVPAPVVAT-LLQWLDRPENAALASAAQQAMETVL 741 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 + + + ++ + +V TGTL + R A++ + LGA V+ +S+KT ++ G+ Sbjct: 742 ARLPEADALQTGPLDGQTVVITGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEE 801 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 GSKL+KAQ LGV+I +E + L L + Sbjct: 802 AGSKLDKAQSLGVEIWDEARLLVFLGDHG 830 >gi|238924576|ref|YP_002938092.1| DNA ligase, NAD-dependent [Eubacterium rectale ATCC 33656] gi|238876251|gb|ACR75958.1| DNA ligase, NAD-dependent [Eubacterium rectale ATCC 33656] Length = 656 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 165/711 (23%), Positives = 288/711 (40%), Gaps = 63/711 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + + ++ L + ++ YY + I+ + E+DA+ + Sbjct: 1 MENNKIKDKIDELVESLNRASKAYYNGADEIMPNYEWDAMFDELTQLEKE----TGYIRH 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P G E + H P LSL K +IE+L+K+ + L Sbjct: 57 DSPTQNAGYEAEAG-NREPHEYPALSLAKTKSIEELKKWA------------GDMPIWLS 103 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG + + Y+ G+ V RG+G G +++ AI P + + VRGE Sbjct: 104 WKLDGLTLVLTYDGGRLVKILTRGNGTVGSNITFLQDAISGFP--KEIPYKGHMVVRGEA 161 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 IS DF LND + YANPRN ASG L + + R++ F+ L + Sbjct: 162 TISYTDFKLLNDTIEDDDE-KYANPRNLASGTLNLDDVEEVKRRHVVFYAFTLVHIDDDI 220 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 M V A V + + +DGLV D+ + Sbjct: 221 ISWGDRMSYLSDMKFNVVKREATDAAGLDEAVKRWTR-DVESGRMDVPVDGLVICYDDTA 279 Query: 311 LQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 R + K+ ++ TRL I+ + ++PVA EPV I G ++ Sbjct: 280 YAAGGSVTGHHATRAGFAFKWQDEAVDTRLRYIEWSCAVST-ISPVAVFEPVQIEGTTVS 338 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+L N I+ L + + V +A ++IPK + + Sbjct: 339 RASLCNLTEIERL-----------GVGKECTLSVIKANKIIPKCIAVKDAV-----GEVE 382 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP+C ++ +G V CT C+A+ +++ FVS+ +I+GL Q Sbjct: 383 IPKECPVCHHPTRIFVSKNSG--VKTLHCTNP-DCTAKNVKKFSRFVSKSGMDIDGLSVQ 439 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F I+ DI+ L KI ++ GFG+ S N+ +I K R++ Sbjct: 440 TMLKFINE----GFIKQFPDIYHLPEH----FDKISSMEGFGEKSCMNMQTAIEKSRHVH 491 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 IF+L I +G + + + + FA + N + + +G + Sbjct: 492 PVNLIFALCIPLIGTDAGKKIVNAIG-FDGFADRMRNAT--------DFVDIDGIGQEKS 542 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQE 668 +I+E+Y NP+N EAL+KE+ + + K V TG + R + + Sbjct: 543 GSILEWYANPQNSTMFEALIKELDIEKVDIKDMSEGSLNGKTFVITGDVHDFANRSEFKA 602 Query: 669 YVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFL 717 YV G V+ +S+KTD ++ ++ SK +KA++LG+ I++E+ F+ + Sbjct: 603 YVESQGGKVTGSVSKKTDYLVNNDTESTSSKNKKAKELGIPIISEDTFIEM 653 >gi|300704237|ref|YP_003745840.1| DNA ligase [Ralstonia solanacearum CFBP2957] gi|299071901|emb|CBJ43230.1| DNA ligase [Ralstonia solanacearum CFBP2957] Length = 813 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 222/647 (34%), Positives = 331/647 (51%), Gaps = 61/647 (9%) Query: 29 SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88 + + YY +P + D+EYD L R +A+ P L P+ P ++GG + Sbjct: 25 NRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEHPAL---RTPDSPTLRVGGAVLPEFAP 81 Query: 89 VTHSIPTLSLEKIWNI--EDLRKFITRIYRFWQKKD-DNSIFFTLEPKIDGTMITIRYEK 145 V H +P LS+ + + F + R + D + + E K DG I +RYE+ Sbjct: 82 VRHVVPMLSIRTETDTTADGALAFDASVRRELGLAESDPPVEYAAELKFDGLAINLRYEQ 141 Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISKNDFLALN 202 G V AA RGDG +GEDV+ IR I IP R + +P+++EVRGEVY+ ++DF LN Sbjct: 142 GFLVQAATRGDGTTGEDVTQNIRTIRQIPLGLRPVDGAVPDVLEVRGEVYMRRDDFERLN 201 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGK--TSEIFAKGQYEMLQ 259 G K + NPRN A+G +R+L+P +FF +GLG+ + ML Sbjct: 202 ARQRERGEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWSAMPETHSGMLD 261 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 + LGFPV+ G+V ++ + + R +LP+DIDG+VYKV+ +LQ++LG R Sbjct: 262 ALVALGFPVSRERAAVKGGEGLVQFHAAIGAKRDSLPFDIDGVVYKVNSLALQRELGFRT 321 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 R PRW ++HK+ ++A T + I +Q+GRTG +TPVARL PV +GG +TNATLHNED + Sbjct: 322 REPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEV 381 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER---------------HPD 424 + +D+RVGD V+V+RAG+VIP+VV +++ R P Sbjct: 382 RR-----------KDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLFNAAQQPK 430 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 PF P CP+C S VVR+ A RC+GGL CSAQ+ E ++HF R +IE Sbjct: 431 HPPFELPKSCPVCGSHVVREEGE------AVARCSGGLFCSAQRKEAIRHFAGRRMMDIE 484 Query: 485 GLGKQQLDFFFKSEDPAF---SIRIPADIFTLQRRQQTSTTKIENILG----FGDVSVTN 537 GLG++ +D + E R+ D F +R+ + N Sbjct: 485 GLGERYIDNLVELEYVHGIADLYRLTLDAFLEMKRRADERDGVTPETVAAGKIATKWAEN 544 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L I + L RF+F+LGIRHVG A++LA + S + + Sbjct: 545 LLAGIQASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAVIRRAPAPL---------- 594 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 L+ +P VG +A+AI +F+ P+N A++ALL G H + Sbjct: 595 LLTLPDVGATVAEAIADFFDEPKNQQALDALLAAGVAPQGEHPPSAK 641 Score = 171 bits (432), Expect = 5e-40, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 17/166 (10%) Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LG+ + A ++ LA + A D L +P ++ +++++ Sbjct: 655 LGVPKLTAIRSKQLAALVPTLAQLATA----------DAAQLEGLP---AEVSASLLDWL 701 Query: 617 QNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + + ++AL E+ ++ E + K +V TGTL + R A+ + Sbjct: 702 EADGHRARLAQLDALRAELLAAMPA-ETAEEGALSGKTVVLTGTLPNLTRDAAKAMLEAA 760 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GA VS +S+KTD ++ G+ GSKL KA +LGVK+++E L LLQ Sbjct: 761 GAKVSGSVSKKTDYVVAGEEAGSKLAKAAELGVKVLDEAGMLALLQ 806 >gi|284931737|gb|ADC31675.1| DNA ligase [Mycoplasma gallisepticum str. F] Length = 715 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 204/747 (27%), Positives = 344/747 (46%), Gaps = 83/747 (11%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E ++ + L ++++ + YY S P + D YD R +P S P Sbjct: 7 ESIKEIIEDLVKKLTKWEHEYYVLSNPSVSDEVYDNTYRTLLGYERKYPQYVLSY---SP 63 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G ++ KV H LSL +N E+L F I + +++D+ + LEPKI Sbjct: 64 TQRVGSSISNKFIKVKHDYLMLSLGNCFNFEELLNFNENIAKISKQEDN---PYVLEPKI 120 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I++ Y G A RGDG GE V A I+ I TIP ++ I +I +RGEVY+S Sbjct: 121 DGLSISLIYLDGVLSEALTRGDGVFGESVIANIKTIKTIPLKINTTIKKI-VIRGEVYVS 179 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKG 253 DF A+N K +AN RN ASG LR ++ ++ R LN F + + E+ + Sbjct: 180 NQDFEAINASRDE--DKKFANSRNYASGSLRNIDVSEVAKRKLNAFFYYIPNAYELGFET 237 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 QY+++Q+++ GF V ++ + + + E+++ ++ L Y IDG V K + F + Sbjct: 238 QYQVIQQLKEWGFNVAKEIKLFSNIKELYTSLKELENNKNKLDYRIDGAVIKYNNFKDYE 297 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +G ++ P+W I++KFA Q T+L DI + +GRTG LT VA+L P+ + G++IT ATL Sbjct: 298 IIGYTSKFPKWAIAYKFAPTQVQTQLKDIILNVGRTGKLTFVAQLAPIELEGSIITYATL 357 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN +YI L DIR+ D V + +A E+IPKV+ + +++R +A+ F Sbjct: 358 HNLEYINDL-----------DIRINDYVYLIKAAEIIPKVIGVNLDKRPNNAKKLEFDYN 406 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C +V+ C C +QL+ L ++ S+ NIEGL + L Sbjct: 407 CPSCHQPLVKKPEE------VDWYCIYDQ-CKQKQLQYLIYYCSKPIMNIEGLSESTLAL 459 Query: 494 FFKSE-----------------------------DPAFSIRIPADIFTLQRRQQTSTTKI 524 FF ++ + + DI+ L+R ++ Sbjct: 460 FFNTKVNDVIRECNELITNQNVNEDLSLFKLLDNEEQTFVNSVLDIYQLERYKEIIIKPW 519 Query: 525 ENI----------LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574 F D S L +SIN+ +N L R + +L I+++G A+S+A Y Sbjct: 520 LKKGFSKSSLKYNFRFQDKSFDKLINSINESKNRELYRLLAALNIKYIGIATAKSIANTY 579 Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634 +R+ + I A ++ F+ + +N +E L Sbjct: 580 HDIDQLKSLT----------VEDYMRLADISSITANSLFSFFSDEKNWELIEQLKTLSIN 629 Query: 635 SIGRHE---KNVSSEIENKKLVFTGTLQKIQRHKAQEYV-TQLGAVVSAILSRKTDIIIV 690 + + SS +KK V TG+ I R+ + + + + +S+ D ++ Sbjct: 630 TKDEINNDLVDSSSIYYDKKFVITGSFS-ISRNDIIKKLSLKYKIKFVSGVSKNVDFVLA 688 Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLF 716 G++P K+ +A+ L + I+ EE + Sbjct: 689 GNSPTAKKINQAKVLNIPIIQEEIWNK 715 >gi|219685109|ref|ZP_03539929.1| DNA ligase, NAD-dependent [Borrelia garinii Far04] gi|219673205|gb|EED30224.1| DNA ligase, NAD-dependent [Borrelia garinii Far04] Length = 660 Score = 372 bits (956), Expect = e-100, Method: Composition-based stats. Identities = 205/713 (28%), Positives = 352/713 (49%), Gaps = 58/713 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +SI + ++E+ +L++ I D YY S P + D YD R + P+ Sbjct: 1 MSI-KIQQEIENLKKLIRKWDKEYYVDSLPSVEDFVYDNHILRLKELESKHPEYKTL--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K G ++ + +V HS+P LSL+K+++++ L+ +I +I +NS ++E Sbjct: 57 DSPTLKFGSDLLNNFEEVEHSVPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG I + Y+ G A RG+G G DV+ IR I IP L + + +RGEV Sbjct: 111 PKIDGCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHIPLFLDEKV--DLVLRGEV 168 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 YI+K +F +N + KPY + RN ASG+LRR++ ++ + +E+ Sbjct: 169 YITKENFFKINKFL----EKPYTSSRNLASGMLRRVDSREVANFPLNIFIYDFLNAELDF 224 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANT---FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K + K++ LGF ++ +R + +++Y ++ R++ Y+IDG+V KV + Sbjct: 225 KTNDLAIAKLKKLGFKIDPLIRFFDQKSSIKEVLNYIADITKQRNSFEYEIDGVVLKVSD 284 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F L+++LG P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA I Sbjct: 285 FVLREKLGYTLHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 TNATLHN+DYI + + VGD V V R G+VIP V +I F Sbjct: 345 TNATLHNQDYIISI-----------GLNVGDVVKVSRRGDVIPAVEMVINKCSKG---VF 390 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP C++ +V++ AH +C + +ER+K+F S++ +IEG Sbjct: 391 KFPDNCPACKTVLVKEG---------AHFFCTNNSCPSVTVERIKYFCSKNCMDIEGFSD 441 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + F F+ + I D++T + K+ GF D V NL +SI + Sbjct: 442 KTISFLFEKK----FISSEIDLYT------FNFYKLLKFKGFKDRKVYNLINSIEASKRK 491 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + + S+GI+ +G R L +L+ N ++ + + + +L+++ +G+ I Sbjct: 492 PFSKLLLSIGIKELGENAIRLL---FLNNLNSFSKLFRLCQDRDFAFSTLLKIKGIGEKI 548 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKA 666 A I+E + + + + + + + + + KK TGT + R Sbjct: 549 ALNIIEAFNDSTMLNKF-KFFENLGFKMEESILIDDDNRLLAGKKFCITGTFKDYSRPII 607 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + GA+ ++ D +IVG+ GSKLEKA L VKIM+ E L Sbjct: 608 IDKLKNKGAIFKTCVTEGLDFLIVGEKAGSKLEKALNLNVKIMSFEDIKSYLD 660 >gi|294660617|ref|NP_853482.2| DNA ligase [Mycoplasma gallisepticum str. R(low)] gi|298286803|sp|Q7NAF8|DNLJ_MYCGA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|284812280|gb|AAP57050.2| DNA ligase [Mycoplasma gallisepticum str. R(low)] gi|284930979|gb|ADC30918.1| DNA ligase [Mycoplasma gallisepticum str. R(high)] Length = 715 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 203/747 (27%), Positives = 344/747 (46%), Gaps = 83/747 (11%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E ++ + L ++++ + YY S P + D YD R +P S P Sbjct: 7 ESIKEIIEDLVKKLTKWEHEYYVLSNPSVSDEVYDNTYRTLLGYERKYPQYVLSY---SP 63 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G ++ KV H LSL +N E+L F I + +++D+ + LEPKI Sbjct: 64 TQRVGSSISNKFIKVKHDYLMLSLGNCFNFEELLNFNENIAKISKQEDN---PYVLEPKI 120 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I++ Y G A RGDG GE V A I+ I TIP ++ I +I +RGEVY+S Sbjct: 121 DGLSISLIYLDGVLSEALTRGDGVFGESVIANIKTIKTIPLKINTTIKKI-VIRGEVYVS 179 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKG 253 DF A+N K +AN RN ASG LR ++ ++ R LN F + + E+ + Sbjct: 180 NQDFEAINASRDE--DKKFANSRNYASGSLRNIDVSEVAKRKLNAFFYYIPNAYELGFET 237 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 QY+++Q+++ GF V ++ + + + E+++ ++ L Y IDG V K + F + Sbjct: 238 QYQVIQQLKEWGFNVAKEIKLFSNIKELYTSLKELENNKNKLDYRIDGAVIKYNNFKDYE 297 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +G ++ P+W I++KFA Q T+L DI + +GRTG LT VA+L P+ + G++IT ATL Sbjct: 298 IIGYTSKFPKWAIAYKFAPTQVQTQLKDIILNVGRTGKLTFVAQLAPIELEGSIITYATL 357 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN +YI L DIR+ D V + +A E+IPKV+ + +++R +A+ F Sbjct: 358 HNLEYINDL-----------DIRINDYVYLIKAAEIIPKVIGVNLDKRPNNAKKLEFDYN 406 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C +V+ C C +QL+ L ++ S+ NIEGL + L Sbjct: 407 CPSCHQPLVKKPEE------VDWYCIYDQ-CKQKQLQYLIYYCSKPIMNIEGLSESTLAL 459 Query: 494 FFKSE-----------------------------DPAFSIRIPADIFTLQRRQQTSTTKI 524 FF ++ + + DI+ L+R ++ Sbjct: 460 FFNTKVNDVIRECNELITNQNVSEDLSLFKLLDNEEQTFVNSVLDIYQLERYKEIIIKPW 519 Query: 525 ENI----------LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574 F + S L +SIN+ +N L R + +L I+++G A+S+A Y Sbjct: 520 LKKGFSKSSLKYNFRFQEKSFDKLINSINESKNRELYRLLAALNIKYIGIATAKSIANTY 579 Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634 +R+ + I A ++ F+ + +N +E L Sbjct: 580 HDIDQLKNLT----------VEDYMRLADISSITANSLFSFFSDEKNWELIEQLKTLSIN 629 Query: 635 SIGRHE---KNVSSEIENKKLVFTGTLQKIQRHKAQEYV-TQLGAVVSAILSRKTDIIIV 690 + + SS +KK V TG+ I R+ + + + + +S+ D ++ Sbjct: 630 TKDEINNDLVDSSSIYYDKKFVITGSFS-ISRNDIIKKLSLKYKIKFVSGVSKNVDFVLA 688 Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLF 716 G++P K+ +A+ L + I+ EE + Sbjct: 689 GNSPTAKKINQAKVLNIPIIQEEIWNK 715 >gi|226327977|ref|ZP_03803495.1| hypothetical protein PROPEN_01868 [Proteus penneri ATCC 35198] gi|225203681|gb|EEG86035.1| hypothetical protein PROPEN_01868 [Proteus penneri ATCC 35198] Length = 505 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 190/509 (37%), Positives = 291/509 (57%), Gaps = 30/509 (5%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ ++++ L + +H+ Y+ P I D+EYD L A+ +P+L S Sbjct: 1 MNKNT-QQKIDKLRVTLRHHEYLYHVMDAPEIPDAEYDRLMNELKALEAEYPELITS--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G + +V H IP LSL+ ++ F R+ K+ I F E Sbjct: 57 DSPTQRVGALPLTAFEQVRHEIPMLSLDNAFDETSYLAFDKRLRDRL--KNSEEITFCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190 K+DG +++ YE G V AA RGDG +GE+++ +R I IP L P IE+RGE Sbjct: 115 LKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLRLYGENIPTRIEIRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSE 248 V++++ F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 175 VFMNEKGFEYLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGG 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Y+ LQ+ + G PV++ V+ ++ +Y+ ++ IR L +DIDG+V KVD+ Sbjct: 235 ELPTSHYKRLQQFKKWGLPVSDAVKLCTGSKAVLDFYHHVEEIRPNLGFDIDGVVIKVDD 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ++LG +R+PRW I++KF ++ T + D++ Q+GRTG +TPVARLEPV + G ++ Sbjct: 295 IALQEELGFVSRAPRWAIAYKFQAQEQMTIIKDVEFQVGRTGAITPVARLEPVQVAGVVV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I+ L IR+GD V+++RAG+VIP+VV +I +R DAQ Sbjct: 355 SNATLHNADEIERL-----------GIRIGDTVVIRRAGDVIPQVVSVIEEKRPADAQEI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CPICQS + R A RCTGGL C AQ+ E LKHFVSR A +++G+G Sbjct: 404 IFPTQCPICQSDIERIEGE------AVARCTGGLICGAQRKEALKHFVSRRAMDVDGMGD 457 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQ 517 + +D + E ++ PAD+F + Sbjct: 458 KIIDQLVEKE----YVKTPADLFFRLDEK 482 >gi|78047224|ref|YP_363399.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|123744002|sp|Q3BV14|DNLJ_XANC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|78035654|emb|CAJ23345.1| DNA ligase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 833 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 210/684 (30%), Positives = 341/684 (49%), Gaps = 80/684 (11%) Query: 12 LSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ++ + + +L + I + Y+ +P + D++YD L R +A+ A P+LA Sbjct: 1 MTASPDPAQRIDALRRRIEDANYRYHVLDEPQMADADYDKLMRELEALERAHPELA---S 57 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G +V H++P LSL ++ E++ +F+ RI + K F+ Sbjct: 58 ADSPTQRVGHLAASRFAEVRHALPMLSLGNAFSEEEVTEFVRRISERLEVK---QPLFSA 114 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189 EPK+DG I++RYE G+FV A RGDG +GEDVSA +R + IP L P+++EVRG Sbjct: 115 EPKLDGLAISLRYENGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPQVLEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE 248 EVY+ + F A N +M A G K ANPRN A+G LR+L+ R L+FF +G+G+ SE Sbjct: 175 EVYMPRAAFEAYNAQMRAQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSE 234 Query: 249 -IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + +L ++R GFPV+ V G+++YY + + R L +DIDG+VYK+D Sbjct: 235 GALPQTHSAILAQLRAWGFPVSALVEVVQGSDGLLAYYQRIGAARDGLAFDIDGVVYKLD 294 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + Q+++G +R+PRW I+HKF ++ ST + I+IQIGRTG TPVARL+PV++ G + Sbjct: 295 DLAGQREMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVI 354 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +TNATLHN D I L D+RVGD V+V+RAG+VIP+V ++ ++R P Q Sbjct: 355 VTNATLHNADQIARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQA 403 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + P+ CP+C S++VR+ A RC+G L C AQ+ E +HFVSR A +++GLG Sbjct: 404 WQMPTQCPVCGSQIVREEG------QAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLG 457 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ ++ S ++ AD++ L Q I + Sbjct: 458 EKFIEVLVDS----GLVKGVADLYLLSVDQLLQLRLISTAESPHAFLREAREHLASGAYA 513 Query: 548 ISLERFI---------------------------FSLGIRHVGAEIARSLAKYYLS---- 576 + F + + + A +L + + Sbjct: 514 QLETSVVGIGVDLAGERDVPQTWQADLLRAGLPRFDWNRKKIATKWAENLIEAIETSRDT 573 Query: 577 ------------------YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 + + ++ + W RVP +G +A+++ F+ Sbjct: 574 TLERFLFALGIEHVGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQ 633 Query: 619 PRNICAVEALLKEVSPSIGRHEKN 642 N A++ LL+ H + Sbjct: 634 AGNQQAIDDLLQRGVRIGDTHPPS 657 Score = 151 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 6/149 (4%) Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLV-GDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636 Q A +++ A +L + V ++A A++++ P N A + + + Sbjct: 684 QQLAASVDSFAALRTAGADALQQ-AGVPAPVVA-ALLQWLDRPENTALANAAQQAMETVL 741 Query: 637 GRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 R + + ++ + +V TGTL + R A++ + LGA V+ +S+KT ++ G+ Sbjct: 742 ARLPQADALQTGPLDGQTVVITGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEE 801 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 GSKL+KAQ LGV+I E + L L + Sbjct: 802 AGSKLDKAQSLGVEIWGEARLLAFLGDHG 830 >gi|219684330|ref|ZP_03539274.1| DNA ligase, NAD-dependent [Borrelia garinii PBr] gi|219672319|gb|EED29372.1| DNA ligase, NAD-dependent [Borrelia garinii PBr] Length = 660 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 203/713 (28%), Positives = 351/713 (49%), Gaps = 58/713 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +SI + ++E+ L++ I D YY S P + D YD R + P+ Sbjct: 1 MSI-KIQQEIEDLKKLIRKWDKEYYVDSLPSVEDFVYDNHILRLKELESTHPEYKTL--- 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K G ++ + +V HS+P LSL+K+++++ L+ +I +I +NS ++E Sbjct: 57 DSPTLKFGSDLLNNFEEVEHSVPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG I + Y+ G A RG+G G DV+ IR I IP L + + +RGEV Sbjct: 111 PKIDGCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHIPLFLDEKV--DLVLRGEV 168 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 YI+K +F +N + KPY + RN ASG+LRR++ ++ + +E+ Sbjct: 169 YITKENFFKINKFL----EKPYTSSRNLASGMLRRVDSREVASFPLNIFIYDFLNAELEF 224 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANT---FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K + K++ LGF ++ +R + +++Y ++ R++ Y+IDG+V KV + Sbjct: 225 KTNDLAIAKLKKLGFKIDPLIRFFDQKSSIKEVLNYIADITKQRNSFEYEIDGVVLKVSD 284 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F L+++LG P+W +++KF +++ I +Q+GR+G +TPVA ++ V + GA I Sbjct: 285 FVLREKLGYTLHHPKWAMAYKFEALSGFSKVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 TNATLHN+DYI + + VGD V V R G+VIP V +I F Sbjct: 345 TNATLHNQDYIISI-----------GLNVGDVVKVSRRGDVIPAVEMVINKCSKG---VF 390 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP C++ +V++ AH +C + +ER+K+F S++ +I+G Sbjct: 391 KFPDNCPACKTVLVKEG---------AHFFCTNNSCPSVTVERIKYFCSKNCMDIKGFSD 441 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + F F+ + I D++T + K+ GF D V NL +SI + Sbjct: 442 KIISFLFEKK----FISSEIDLYT------FNFYKLLKFKGFKDRKVYNLINSIEASKRK 491 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + + S+GI+ +G R L +L+ N ++ + + + +L+++ +G+ I Sbjct: 492 PFSKLLLSIGIKELGENAIRLL---FLNNLNSFSKLFRLCQDRDFAFSTLLKIKGIGEKI 548 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKA 666 A I+E + + + + + + + + + KK TGT + R Sbjct: 549 ALNIIEAFNDSTMLNKF-KFFENLGFKMEESILIDDDNRLLAGKKFCITGTFKGYSRPII 607 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + GA+ ++ D +IVG+ GSKLEKA L VKIM+ E L Sbjct: 608 IDKLKNKGAIFKTCVTEGLDFLIVGEKAGSKLEKALNLNVKIMSFEDIKSYLD 660 >gi|325928155|ref|ZP_08189364.1| DNA ligase, NAD-dependent [Xanthomonas perforans 91-118] gi|325541451|gb|EGD12984.1| DNA ligase, NAD-dependent [Xanthomonas perforans 91-118] Length = 833 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 210/684 (30%), Positives = 341/684 (49%), Gaps = 80/684 (11%) Query: 12 LSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ++ + + +L + I + Y+ +P + D++YD L R +A+ A P+LA Sbjct: 1 MTASPDPAQRIDALRRRIEDANYRYHVLDEPQMADADYDKLMRELEALERAHPELA---S 57 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G +V H++P LSL ++ E++ +F+ RI + K F+ Sbjct: 58 ADSPTQRVGHLAASRFAEVRHALPMLSLGNAFSDEEVTEFVRRISERLEVK---QPLFSA 114 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189 EPK+DG I++RYE G+FV A RGDG +GEDVSA +R + IP L P+++EVRG Sbjct: 115 EPKLDGLAISLRYENGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPQVLEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE 248 EVY+ + F A N +M A G K ANPRN A+G LR+L+ R L+FF +G+G+ SE Sbjct: 175 EVYMPRAAFEAYNAQMRAQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSE 234 Query: 249 -IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + +L ++R GFPV+ V G+++YY + + R L +DIDG+VYK+D Sbjct: 235 GALPQTHSAILAQLRAWGFPVSALVEVVQGSDGLLAYYQRIGAARDGLAFDIDGVVYKLD 294 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + Q+++G +R+PRW I+HKF ++ ST + I+IQIGRTG TPVARL+PV++ G + Sbjct: 295 DLAGQREMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVI 354 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +TNATLHN D I L D+RVGD V+V+RAG+VIP+V ++ ++R P Q Sbjct: 355 VTNATLHNADQIARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQA 403 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + P+ CP+C S++VR+ A RC+G L C AQ+ E +HFVSR A +++GLG Sbjct: 404 WQMPTQCPVCGSQIVREEG------QAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLG 457 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ ++ S ++ AD++ L Q I + Sbjct: 458 EKFIEVLVDS----GLVKGVADLYLLSVDQLLQLRLISTAESPHAFLREAREHLASGAYA 513 Query: 548 ISLERFI---------------------------FSLGIRHVGAEIARSLAKYYLS---- 576 + F + + + A +L + + Sbjct: 514 QLETSVVGIGVDLAGERDVPQTWQADLLRAGLPRFDWNRKKIATKWAENLIEAIETSRDT 573 Query: 577 ------------------YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 + + ++ + W RVP +G +A+++ F+ Sbjct: 574 TLERFLFALGIEHVGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQ 633 Query: 619 PRNICAVEALLKEVSPSIGRHEKN 642 N A++ LL+ H + Sbjct: 634 AGNQQAIDDLLQRGVRIGDTHPPS 657 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 6/149 (4%) Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLV-GDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636 Q A +++ A +L + V ++A A++++ P N A + + + Sbjct: 684 QQLAAAVDSFAALRTAGADALQQ-AGVPAPVVA-ALLQWLDRPENTALANAAQQAMETVL 741 Query: 637 GRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 R + + ++ + +V TGTL + R A++ + LGA V+ +S+KT ++ G+ Sbjct: 742 ARLPQADALQTGPLDGQTVVITGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEE 801 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 GSKL+KAQ LGV+I +E + L L + Sbjct: 802 AGSKLDKAQSLGVEIWDEARLLAFLGDHG 830 >gi|83748812|ref|ZP_00945825.1| NAD-dependent DNA ligase [Ralstonia solanacearum UW551] gi|207743250|ref|YP_002259642.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) protein [Ralstonia solanacearum IPO1609] gi|83724504|gb|EAP71669.1| NAD-dependent DNA ligase [Ralstonia solanacearum UW551] gi|206594647|emb|CAQ61574.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) protein [Ralstonia solanacearum IPO1609] Length = 813 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 223/647 (34%), Positives = 332/647 (51%), Gaps = 61/647 (9%) Query: 29 SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88 + + YY +P + D+EYD L R +A+ P+L P+ P ++GG + Sbjct: 25 NRYAHEYYVLDQPSVPDAEYDRLYRALEALEAEHPEL---RTPDSPTLRVGGAVLPEFAP 81 Query: 89 VTHSIPTLSLEKIWNI--EDLRKFITRIYRFWQKKD-DNSIFFTLEPKIDGTMITIRYEK 145 V H +P LS+ + + F + R + D I + E K DG I +RYE+ Sbjct: 82 VRHVVPMLSIRTETDTTADGALAFDASVRRELGLAESDPPIEYAAELKFDGLAINLRYEQ 141 Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISKNDFLALN 202 G V AA RGDG +GEDV+ IR I IP R + +P+++EVRGEVY+ ++DF LN Sbjct: 142 GFLVQAATRGDGATGEDVTQNIRTIRQIPLGLRPVDGAVPDVLEVRGEVYMRRDDFERLN 201 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGK--TSEIFAKGQYEMLQ 259 G K + NPRN A+G +R+L+P +FF +GLG+ + ML Sbjct: 202 ARQRERGEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWSGMPETHSGMLD 261 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 + LGFPV+ G+V ++ + + R +LP+DIDG+VYKV+ +LQ++LG R Sbjct: 262 ALVALGFPVSKERAAVMGGEGLVQFHAAIGAKRDSLPFDIDGVVYKVNALALQRELGFRT 321 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 R PRW ++HK+ ++A T + I +Q+GRTG +TPVARL PV +GG +TNATLHNED + Sbjct: 322 REPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEV 381 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER---------------HPD 424 + +D+RVGD V+V+RAG+VIP+VV +++ R P Sbjct: 382 RR-----------KDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLFNPAQQPK 430 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 PF P CP+C S VVR+ A RC+GGL CSAQ+ E ++HF R +IE Sbjct: 431 YPPFELPKSCPVCGSHVVREEGE------AVARCSGGLFCSAQRKEAIRHFAGRRMMDIE 484 Query: 485 GLGKQQLDFFFKSEDPAF---SIRIPADIFTLQRRQQTSTTKIENILG----FGDVSVTN 537 GLG++ +D + E R+ D F +R+ + N Sbjct: 485 GLGERYIDNLVELEYVHGIADLYRLTLDAFLEMKRRADERDGVTPETVAAGKIATKWAEN 544 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L I + L RF+F+LGIRHVG A++LA + S + + Sbjct: 545 LLAGIQASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAVIRRAPAPL---------- 594 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 L+ +P VG +A+AI +F+ P+N A++ALL G H + Sbjct: 595 LLTLPDVGATVAEAIADFFDEPKNQQALDALLAAGVAPQGEHPPSAK 641 Score = 173 bits (437), Expect = 1e-40, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 79/166 (47%), Gaps = 17/166 (10%) Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LG+ + A ++ LA + D L +P ++ +++++ Sbjct: 655 LGVPKLTATRSKQLATLVPTLAQLTTA----------DAAQLEGLP---AEVSASLLDWL 701 Query: 617 QNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + + ++AL E+ ++ E + K +V TGTL + R A+ + Sbjct: 702 EADGHRARLAQLDALRAELLAAMPA-ETAEEGALSGKTVVLTGTLPNLTRDAAKAMLEAA 760 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GA VS +S+KTD ++ G+ GSKL KA++LGVK+++E L LLQ Sbjct: 761 GAKVSGSVSKKTDYVVAGEEAGSKLAKAEELGVKVLDEAGMLALLQ 806 >gi|187918415|ref|YP_001883978.1| NAD-dependent DNA ligase LigA [Borrelia hermsii DAH] gi|254781263|sp|B2S0Q2|DNLJ_BORHD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|119861263|gb|AAX17058.1| NAD-dependent DNA ligase [Borrelia hermsii DAH] Length = 669 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 197/713 (27%), Positives = 345/713 (48%), Gaps = 56/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IE E+ L+ I + YY S P + D YD R + +P+ + Sbjct: 2 IEDVEDEILRLKNIIKRWNREYYVDSSPSVGDLTYDKALLRLQDLESKYPEYKTL---DS 58 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P + G ++ +V HS P LSL+K ++I+ L +I ++ ++ ++EPK Sbjct: 59 PTFRFGSDLLNDFEEVKHSFPILSLDKTYDIKGLSLWIEKMVLESAISGLHTG-ISVEPK 117 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I + Y+ G A RGDG G DV+ ++ I +P + I + +RGE+YI Sbjct: 118 IDGCSIVLHYKDGILEKALTRGDGRVGNDVTENVKTIRNVPLRIDEKIE--LVLRGEIYI 175 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 +K +FL +N + + PY N RN ASGILRR++ ++ + S + Sbjct: 176 TKENFLKINRTL----KNPYVNARNLASGILRRISSKEVANFPLDIFVYDILYSSLKLNT 231 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 ++ K++ GF VN + GI+++ +++++R + Y+IDG+V K+D F Sbjct: 232 SHDAFDKLKQFGFKVNPFCEFFGGKNLEAGIIAHVKKIEALRDSFEYEIDGVVLKIDSFI 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 L+K LG + P+W I++KF ++++DI +Q+GR+G +TPVA +E V + GA ITN Sbjct: 292 LRKILGSTSHHPKWSIAYKFESCTGMSKVVDIVVQVGRSGKITPVAHVEKVLVAGASITN 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN+DYI + + VGD V++ R G+VIP V +I F Sbjct: 352 ASLHNQDYIDFV-----------GLNVGDIVVISRRGDVIPAVDLVIEKLAVGS---FKI 397 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP C+ ++++ AH CS + +E++K+F S+ NI GL ++ Sbjct: 398 PSNCPSCKMTLIKEG---------AHLFCVNRHCSCRIIEQVKYFCSKKCMNIVGLSEKT 448 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++F F+ + I +++T + ++ N+ GF + NL SI ++ Sbjct: 449 IEFLFEKK----FISSEVELYT------FNCDRLINLKGFNLKRINNLKRSIEDSKSRPF 498 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + + +GI+ +G L + N I+ + + L+++ +G+ IA Sbjct: 499 RKLLLGMGIKDLGENTILVLIN---NNLNSFDTISTLCKNKEAALAKLLKIKGIGERIAL 555 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKAQ 667 I+E + + + KE+ + N S + KK TG+ + R Sbjct: 556 NIIEAFNDKTILDKF-NFFKELGLKMEEDNTNDAVYDSFLFGKKFCITGSFKGYSRDVLI 614 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI---MNEEQFLFL 717 E +T+ GAV S +++ D ++VG+ G K++KA LG+K + + F+ L Sbjct: 615 EKLTKKGAVFSRSVTKCLDFLLVGEKFGLKVQKANNLGIKTFSLFDIKDFVDL 667 >gi|297196402|ref|ZP_06913800.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486] gi|197720877|gb|EDY64785.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486] Length = 715 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 199/734 (27%), Positives = 323/734 (44%), Gaps = 95/734 (12%) Query: 30 YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI-GGEMNLSLFK 88 YY+ + + D YD L R A PD P P K+ GG + Sbjct: 30 RASAAYYETGESTLDDDAYDRLVRGIAAYEQEHPD---ETSPASPTGKVAGGAVVAG--D 84 Query: 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148 V H++P LSL+ +++ E L + + R + +++EPK+DG + RYE+G Sbjct: 85 VPHTVPMLSLDNVFSAEQLVAWTASVERRTGPPVE---EWSVEPKLDGLAVAARYEEGAL 141 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208 RGDG +GEDVS I I +PR L+ + +E+RGEV +++ F N + Sbjct: 142 TRLITRGDGTAGEDVSHAIGTIVGLPRTLAEPV--TLEIRGEVLMTEEQFERANTVRVEH 199 Query: 209 GRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT-------SEIFAKGQYEMLQKM 261 G P+ANPRN A+G LR + F L + G +++ + Sbjct: 200 GGAPFANPRNGAAGTLRAKDRAYTVEMTFFGYGALAVPASGEELTGRLGEWGHGRIMRYV 259 Query: 262 RCLGFPVNNGV----RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 LG + R T I + +E+ + R LP+ IDG+V K D + Q G Sbjct: 260 ADLGVHTADSTAVAPRVLTTTEAIQARIDEIAAARPGLPFGIDGIVIKADSAADQAAAGF 319 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +R+PRW +++K + T LL ++ +GRTGI+ P A LEPV I G+ +T ATLHN Sbjct: 320 GSRAPRWAVAYKLPAVEKVTTLLGVEWNVGRTGIIAPRAVLEPVEIDGSTVTYATLHNPA 379 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I RD+R GD+V+V +AG++IP+V + + R QP FP CP C Sbjct: 380 DITR-----------RDLRTGDKVMVYKAGDIIPRVEAPVAHLRTGAEQPVVFPEVCPQC 428 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S + RC G C + + + RD +IEGLG ++ Sbjct: 429 GSEIDTSEQ--------RWRCVRGRDC--HVVASVSYAAGRDQLDIEGLGVTRVVQLVD- 477 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A +R AD+FTL R Q + G+ S NL +I+ R L R +L Sbjct: 478 ---AGLVRDLADLFTLTREQLLG------LERMGETSTDNLLAAIDTARTRPLSRVFCAL 528 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 G+R G ++R +A+Y+ + ++ D +L +V +G A+ +V + Sbjct: 529 GVRGTGRSMSRRIARYFAAMEHIRAA----------DAETLQQVDGIGVEKARTVVA--E 576 Query: 618 NPRNICAVEALLKEVSPSIGRHEKN--------------------------VSSEIENKK 651 ++ L+ + + Sbjct: 577 LEELAPLIDRLVAAGVNMTEPGATPPAARAEDGAGAEGEGQDTGAGASTAGGAGPLSGMT 636 Query: 652 LVFTGT----LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 +V TG L+K+ R++ E + + G S+ +S++T +++ G+N GSK +KA+QLG + Sbjct: 637 VVVTGAMTGALEKLSRNQMNELIERAGGKSSSSVSKRTSLLVAGENAGSKRDKAEQLGTR 696 Query: 708 IMNEEQFLFLLQQY 721 I ++F ++ + Sbjct: 697 IATPDEFAAIVADF 710 >gi|21242377|ref|NP_641959.1| NAD-dependent DNA ligase LigA [Xanthomonas axonopodis pv. citri str. 306] gi|81803317|sp|Q8PM07|DNLJ_XANAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|21107814|gb|AAM36495.1| DNA ligase [Xanthomonas axonopodis pv. citri str. 306] Length = 833 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 208/672 (30%), Positives = 334/672 (49%), Gaps = 80/672 (11%) Query: 12 LSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ++ + + +L + I + Y+ +P + D++YD L R +A+ A P+LA Sbjct: 1 MTASPDPAQRIDALRRRIEDANYRYHVLDEPQMADADYDKLMRELEALERAHPELA---S 57 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G +V H++P LSL ++ E++ +F+ RI + F+ Sbjct: 58 ADSPTQRVGHLAASRFAEVRHAMPMLSLGNAFSDEEVTEFVRRISERL---EVRQPLFSA 114 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189 EPK+DG I++RYE G+FV A RGDG +GEDVSA +R + IP L P ++EVRG Sbjct: 115 EPKLDGLAISLRYENGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPRVLEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE 248 EVY+ + F A N +M A G K ANPRN A+G LR+L+ R L+FF +G+G+ SE Sbjct: 175 EVYMPRAAFEAYNAQMRAQGGKILANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSE 234 Query: 249 -IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + +L ++R GFPV+ V G+++YY + R L +DIDG+VYK+D Sbjct: 235 GALPQAHSAILAQLRAWGFPVSALVEVVQGSDGLLAYYQRIGEARDGLAFDIDGVVYKLD 294 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + Q+++G +R+PRW I+HKF ++ ST + I+IQIGRTG TPVARL+PV++ G + Sbjct: 295 DLAGQREMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVI 354 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +TNATLHN D I L D+RVGD V+V+RAG+VIP+V ++ ++R P Q Sbjct: 355 VTNATLHNADQIARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQA 403 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + P+ CP+C S +VR+ A RC+G L C AQ+ E +HFVSR A +++GLG Sbjct: 404 WQMPTQCPVCGSEIVREEG------QAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLG 457 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ ++ S ++ AD++ L Q I + Sbjct: 458 EKFIEVLVDS----GLVKGVADLYLLSVDQLLQLRLISTADSPHAFLREAREHLASGAYA 513 Query: 548 ISLERFI---------------------------FSLGIRHVGAEIARSLAKYYL----- 575 + F + + + A +L + Sbjct: 514 QLEASVVGIGVDLAGERDVPQTWQADLLRAGLPSFDWNRKKIATKWAENLIEAIEISRDT 573 Query: 576 -----------------SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 + + + ++ + W RVP +G +A+++ F+ Sbjct: 574 TLERFLFALGIEHVGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQ 633 Query: 619 PRNICAVEALLK 630 N A++ LL Sbjct: 634 AGNQKAIDHLLA 645 Score = 165 bits (417), Expect = 3e-38, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + L I V A +A + S + V +A+ Sbjct: 667 ANLLEDLEIPKVTPIRAAQIATAFGSIDALRNGGPEPLVEA-----------GVPQSVAE 715 Query: 611 AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 ++ + P N + L E+ + + + ++ + +V TGTL + R A+ Sbjct: 716 SLAAWLLVPANDTLAVNAQRKLSELLAMLPEAGEEKTGPLDGQTVVITGTLAALTRDAAK 775 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + + LGA V+ +S+KT ++ G+ GSKL+KAQ LGV+I +E + L L + Sbjct: 776 QRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLGDHG 830 >gi|85702769|ref|ZP_01033873.1| DNA ligase, NAD-dependent [Roseovarius sp. 217] gi|85671697|gb|EAQ26554.1| DNA ligase, NAD-dependent [Roseovarius sp. 217] Length = 866 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 270/677 (39%), Positives = 386/677 (57%), Gaps = 40/677 (5%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ ++AR EL+ L ++ + Y+ P I D+ YDALK R AI P L Sbjct: 5 IAVEDLTEDEARTELARLAALLAEANRAYHTEDAPEITDAAYDALKARNAAIEARLPALK 64 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R+ + +++G + KVTH I LSL + D+ +F TRI R+ DD + Sbjct: 65 RA---DSASDQVGAAPSDGFAKVTHRIRMLSLGNAFEAGDVAEFDTRIRRYLGLADDAPL 121 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 +T EPKIDG +++RYE+G+ V AA RGDG GE+V+A I IP L+ PE++E Sbjct: 122 AYTAEPKIDGLSLSLRYEQGRLVQAATRGDGEVGENVTANAHTIADIPETLTGA-PEVLE 180 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245 VRGEVY+S DF ALN A K +ANPRNAA+G LR+L+ R L FF + G+ Sbjct: 181 VRGEVYMSHADFAALNARQAAKSDKSFANPRNAAAGSLRQLDATITAARPLRFFAYSWGE 240 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S A Q + ++ LGF N + +++ Y ++ R+TL YDIDG+VYK Sbjct: 241 LSAPLADTQMGAIDRLAALGFQTNPLTVLCDGTEALLAQYARIEQARATLGYDIDGVVYK 300 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ LQ +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV +GG Sbjct: 301 VDDLGLQARLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGG 360 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGG-----RDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 +++NATLHNEDYI G D+ G V+R +DIRVGD V V RAG+VIPK+ D+ + + Sbjct: 361 VVVSNATLHNEDYIAGRDSKGAVIRPDENGNAKDIRVGDWVQVYRAGDVIPKIADVDLTK 420 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R +A PF FP+ CP C S VR+ A RC GGL C AQ +E+LKHFVSR A Sbjct: 421 RPENAAPFIFPTTCPECGSDAVREEG------DAVRRCMGGLICPAQAVEKLKHFVSRAA 474 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 F+IEGLG +Q++ F+ D I+ PADIFTL+ R + TK+ N G+G+ SV L++ Sbjct: 475 FDIEGLGAKQIEMFYN--DDQLPIKQPADIFTLKERDGKNLTKLANREGWGEKSVAKLFE 532 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND-DWLSLI 599 +I RR++ L RFIF+LGI +VGAE+++ LA ++ S+ Q +++ Sbjct: 533 AIEARRSVELPRFIFALGIPNVGAEVSKDLANFHGSWTALVQANDDVKNQRIQTAIEHWS 592 Query: 600 RVPLVGD--------IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651 R+ + + +A + EF + + L + N+ + K Sbjct: 593 RIN-ISNDTNWLEVVEVANELREF-----ELSFWDRLYAYKGVAGVGLLANL-RKFLGK- 644 Query: 652 LVFTGTLQKIQRHKAQE 668 +L K+ +A + Sbjct: 645 -----SLTKVSDEQATK 656 Score = 173 bits (439), Expect = 8e-41, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 79/149 (53%) Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 Y + ++ + I + L+ + G + +I+ F+ N N+ AV ++LK Sbjct: 717 DNYGGWSASSKNLEEFIEKDAQICAQLLPLVGHGQVTVDSIIRFFGNNNNVAAVNSILKY 776 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 V P + S I K +VFTGTL+K+ R +A+ LGA V+ +S KTD++I G Sbjct: 777 VDPKEFEKQAITDSSIYGKTVVFTGTLEKMTRAEAKARAEGLGAKVAGSVSAKTDLLIAG 836 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 GSK +KA +LG++ ++E+ +L L+ Sbjct: 837 PGAGSKAKKAAELGIETIDEDGWLALIGD 865 >gi|253578000|ref|ZP_04855272.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850318|gb|EES78276.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 614 Score = 369 bits (947), Expect = e-99, Method: Composition-based stats. Identities = 169/672 (25%), Positives = 295/672 (43%), Gaps = 66/672 (9%) Query: 51 LKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKF 110 + A+ + N P +G E L K H P LSL+K + E LR+F Sbjct: 1 MYDELQALEKE----TGTVLANSPTVSVGYEAVDQLPKEEHESPMLSLDKTKDREVLREF 56 Query: 111 ITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI 170 I L K+DG I + YE G A RG+G +GE V+ R Sbjct: 57 I------------GEHKTLLSWKLDGLTIVLTYENGGLAKAVTRGNGVTGEVVTNNARVF 104 Query: 171 PTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230 +P L + + +RGE I+ +DF +N+ + V Y NPRN SG +R+LN Sbjct: 105 KNVP--LKIPYQGRLVLRGEAIITYSDFERINESIEDVD-AKYKNPRNLCSGSVRQLNNE 161 Query: 231 -DITRYLNFFVHGLGKTSEIFAKGQY-EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM 288 R + F+ L + + ++ GF V + Sbjct: 162 ITARRNVRFYAFTLVSADGVDFHNSRARQFEWLKEQGFDVVEYRTVTASTLD--EAMEYF 219 Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348 + + + DGLV D+ + LG A+ PR + K+A++ T LL+I+ R Sbjct: 220 STAITENDFPSDGLVALYDDIAYGDSLGRTAKFPRNAFAFKWADEIRETHLLEIEWSPSR 279 Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408 TG++ PVA EPV + G ++ A++HN +K L + +GD + V +A Sbjct: 280 TGLINPVAVFEPVELEGTTVSRASVHNVSILKELQ-----------LGIGDTITVYKANM 328 Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 +IP++ + + + P CP C C+A++ Sbjct: 329 IIPQIAENLTR-----SSKLEIPDTCPACGHGTQIQ-----KVNDVEALYCTNPDCAAKK 378 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 ++ F SRDA NI+GL + L+ F I DIF + + + +I + Sbjct: 379 IKSFALFASRDAMNIDGLSEATLEKFIAR----GFIHDFGDIFEIGKHRD----EIVEMD 430 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 GFG+ S NL S++K + +L + I+SLGI ++G A+ + +++ +++ Sbjct: 431 GFGEKSFENLMTSLDKAKETTLAKVIYSLGIANIGLANAKVICRHFD---------DDLE 481 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648 + D + + +G +IA ++ +++ N N ++ L+ ++ + EK Sbjct: 482 KIRHADKEEISSIDTIGPVIAGSLTDYFSNEDNNRKLDHLMSHLTVK--KEEKTGEQIFR 539 Query: 649 NKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLG 705 N V TG+++ R +A+E++ LG V+ ++ KT+ +I D + SK +KA++LG Sbjct: 540 NMNFVITGSVEHFANRAQAKEFIESLGGKVTGSVTSKTNYLINNDTTSNSSKNKKAKELG 599 Query: 706 VKIMNEEQFLFL 717 + I++EE FL + Sbjct: 600 IPILSEEDFLKM 611 >gi|15828860|ref|NP_326220.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Mycoplasma pulmonis UAB CTIP] gi|81532955|sp|Q98QH2|DNLJ_MYCPU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|14089803|emb|CAC13562.1| DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+]) [Mycoplasma pulmonis] Length = 679 Score = 369 bits (947), Expect = e-99, Method: Composition-based stats. Identities = 204/707 (28%), Positives = 358/707 (50%), Gaps = 51/707 (7%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD----LARSEDPNGPLNKI 78 L +++ ++ YY ++ ++ D YDA + I FP+ + + + L K+ Sbjct: 14 ELNEKLKLYNHHYYNKNESLVSDEYYDAKLLELENIRDNFPEEYNQVFQKDFSKSVLEKV 73 Query: 79 GG--EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 E ++ L K H LSL K ++ EDL ++ RI F N+ + L+ KIDG Sbjct: 74 NHLDEQDVKLKKEKHQKLMLSLNKAYSFEDLERYTNRINTFVG----NNHQYILQEKIDG 129 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I++ YE G A RGDG GE+V+ I IP ++NI E IE+RGE++ S Sbjct: 130 VSISLYYENGILTKALTRGDGIYGENVTHNALNIKDIP--KTINIKENIELRGEIFFSLK 187 Query: 197 DFL----ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 F D+ K + PRN ASGIL+ L TD + +L+ F++ + K Sbjct: 188 LFESLKNEFLDKQDGTKNKKWNTPRNKASGILKSLKTTDESSWLSCFIYEVVSPENFNLK 247 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q ++ ++ GF + I ++ K Y+IDGLV K+++ SL Sbjct: 248 TQKQLFDFLKIQGF-NLPKFEFIENENLIENFITNFKFEDDQRDYEIDGLVIKLNDLSLY 306 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 LG+ ++ I++KF +K T++ DI + +GRTG++T A+L+ V + G+ I AT Sbjct: 307 DLLGKTSKFFHHSIAYKFRKKFVMTKIEDIFVTVGRTGLITYNAKLQEVVLNGSKIKAAT 366 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN +YIK + I +GD+V +++AGE+IP+VV ++ + D FS Sbjct: 367 LHNYEYIKNI-----------KINIGDKVYIEKAGEIIPRVVKLVSPK--NDQNYFSPIE 413 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 FCP C++++ N ++ C +++++LK+FVS+D I+ LG ++++ Sbjct: 414 FCPSCKNKLSWSEN-------MLNQFCLNPDCIEKKIQKLKYFVSKDGMEIQELGGKKIE 466 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 FF ++ DI+ L+ + + + F + SV L I + +++ + Sbjct: 467 LFFAK----GWVKKIEDIYNLK----NNYDDLLKLENFQEHSVNVLLHKIEESKDVYTWK 518 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 I +LGI+++G ++A+SL K F + N+++ ++ L + G + +++ Sbjct: 519 LIAALGIKNIGKKLAKSLVKII-----FENDQKNLLSLLEFNYDELEKYDEFGSVKIESL 573 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 EF+ N N ++ L + E S+++ENK + TGTL+K R + + Q Sbjct: 574 KEFFANDENRNLIQFLDQNGFELKMEKEIIQSTKLENKTFLITGTLEK-PRDFYKNLIIQ 632 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G ++S+ +S+K D +IVG NPGSK +KA +L +KI++EE +L+ Sbjct: 633 NGGIISSSISKKLDYLIVGQNPGSKEKKAMELNIKIIDEEFLKKMLE 679 >gi|308375959|ref|ZP_07668156.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu007] gi|308344705|gb|EFP33556.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu007] Length = 614 Score = 369 bits (946), Expect = 1e-99, Method: Composition-based stats. Identities = 186/604 (30%), Positives = 291/604 (48%), Gaps = 43/604 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P + + ++ +L +E+ H YY PII D+E+D L RR +A+ P+L Sbjct: 4 PDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL-- 61 Query: 68 SEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P+ P +GG V H LSL+ + ++L + RI+ Sbjct: 62 -RTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAH--- 117 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIP 182 + E KIDG +++ Y +G+ A+ RGDG +GEDV+ R I +P L +P Sbjct: 118 -YLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVP 176 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 E++EVRGEV+ +DF ALN ++ G+ P+ANPRN+A+G LR+ +P R L H Sbjct: 177 EVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICH 236 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 GLG ++ +R G PV+ A G+ + R + ++IDG Sbjct: 237 GLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDG 296 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V KVDE +LQ++LG +R+PRW I++K+ ++A T+LLDI + +GRTG +TP A + PV Sbjct: 297 VVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPV 356 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G+ + ATLHN IK + + +GD V++++AG+VIP+V+ +V R Sbjct: 357 KVAGSTVGQATLHNASEIKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVELR 405 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 + F P+ CP C S + + + A RC C Q ER+ H SR+ Sbjct: 406 DGSEREFIMPTTCPECGSPLAPE-----KEGDADIRCPNARGCPGQLRERVFHVASRNGL 460 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +IE LG + +++ I ++F L R T G + L + Sbjct: 461 DIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVN 516 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 ++K + L R + +L IRHVG AR+LA + S A L V Sbjct: 517 LDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAIAAA----------STDQLAAV 566 Query: 602 PLVG 605 VG Sbjct: 567 EGVG 570 >gi|58426627|gb|AAW75664.1| DNA ligase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 961 Score = 368 bits (945), Expect = 2e-99, Method: Composition-based stats. Identities = 221/684 (32%), Positives = 337/684 (49%), Gaps = 90/684 (13%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +E + + + L + I D YY + P I D++YD L R + +P+L + Sbjct: 118 VETM-EQGVIERARELRRRIENADHRYYDLADPEITDAQYDQLFRELQELEQKYPELVTA 176 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P ++GG + S KV HSIP LSL ++ +++ F+ RI+R N + F Sbjct: 177 ---DSPSMRVGGAVRKSFVKVRHSIPMLSLANAFDEVEVKNFVDRIFRRMGS--SNPLEF 231 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187 ++EPK DG I++RYE GKFV RGDG GEDVS IR I ++P L N P I+EV Sbjct: 232 SVEPKFDGLAISLRYELGKFVQGVTRGDGDVGEDVSENIRTIRSVPLKLKGNNVPAILEV 291 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG-- 244 RGEVY+ ++ F N +A G K ANPRN A+G LR+L+ R L+FF +G+G Sbjct: 292 RGEVYMPRDGFSEFNKRAMARGEKLLANPRNGAAGSLRQLDSRISAQRPLSFFAYGVGLI 351 Query: 245 --------KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296 + + A ML ++R GFPV++ V G+++YY + R LP Sbjct: 352 QVEQDLFEEIPQSIASTHSAMLAQLRAWGFPVSSLVEVVQGSDGLLAYYQRIGEARDGLP 411 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 +DIDG+VYK+D+ + Q+++G +R+PRW ++HKF ++ ST + I+IQIGRTG TPVA Sbjct: 412 FDIDGVVYKLDDLAGQREMGFVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVA 471 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 RL+PV++ G ++TNATLHN D I L D+RVGD V+V+RAG+VIP+V + Sbjct: 472 RLKPVHVAGVIVTNATLHNADQIARL-----------DVRVGDTVIVRRAGDVIPEVAAV 520 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 + ++R P Q + P+ CP+C S +VR+ A RC+G L C AQ+ E +HFV Sbjct: 521 VADQRPPATQSWQMPTQCPVCGSEIVREEG------QAVWRCSGELTCPAQRKEAFRHFV 574 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 SR A +++GLG++ ++ S ++ AD++ L Q I Sbjct: 575 SRRAMDVDGLGEKFIEVLVDS----GVVQGVADLYLLTVDQLLQLRMISTAESPHAFLRE 630 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAE------IARSLAKYYLSYQ------------ 578 + LE + +G+ G A L ++ Sbjct: 631 AREHLASGAYAQ-LEATLVGIGVDLAGEREVPQTWQADLLRAGLPTFDWNRKKIATKWAE 689 Query: 579 NFAQEINNIIAHNND--------------------------------DWLSLIRVPLVGD 606 N + I + W RVP +G Sbjct: 690 NLIEAIETSRDTTLERFLFALGIEHVGESTAKALSAWFGDLDLIRHLPWPLFKRVPDIGG 749 Query: 607 IIAQAIVEFYQNPRNICAVEALLK 630 +A+++ F+ P N A++ LL Sbjct: 750 EVARSLGHFFDQPGNQKAIDHLLA 773 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + L I V A +A + S + V +A+ Sbjct: 795 ANLLEDLEIPKVTPIRAAQIATAFGSIDALRNGGPEPLVEA-----------GVPQSVAE 843 Query: 611 AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 ++ + P N + L + + + + ++ + +V TGTL + R A+ Sbjct: 844 SLATWLLVPANDTLAVKAQKKLSALLAMMPEAGEEKTGPLDGQTVVITGTLAALTRDAAK 903 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + + LGA V+ +S+KT ++ G+ GSKL+KAQ LGV+I +E + L L ++ Sbjct: 904 QRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLGEHG 958 >gi|167465474|ref|ZP_02330563.1| DNA ligase, NAD-dependent [Paenibacillus larvae subsp. larvae BRL-230010] Length = 579 Score = 368 bits (945), Expect = 2e-99, Method: Composition-based stats. Identities = 178/622 (28%), Positives = 295/622 (47%), Gaps = 58/622 (9%) Query: 112 TRIYRFWQKKDD-------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVS 164 R+ + + F +E K DG I + Y++G V A+ RG+G GE + Sbjct: 1 NRVQKLVNDYNSKNPSTPLPEPSFAVELKFDGLTINLTYDQGNLVQASTRGNGVVGEGIL 60 Query: 165 ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL 224 A ++ I ++P + +IEV+GE + + N +P N RNAA+G L Sbjct: 61 AQVKTIKSVPLEIPYK-EGLIEVQGEGMMLLSVLDQYNQTA----AEPLKNARNAAAGAL 115 Query: 225 RRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVS 283 R LNP R L F + +G + EM+ ++ F VN V+ NT + Sbjct: 116 RNLNPKVTAERRLTAFFYNVGFSDRKQFMNHQEMIAFLKENHFKVNPYVKYFNTIDEVFE 175 Query: 284 YYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDID 343 +++ R + IDG V KV + ++ LG + PRW I++KF ++ +T L + Sbjct: 176 EMKKLEQERHDFDFLIDGAVIKVTDIRTREVLGYTEKFPRWAIAYKFEAEEVTTVLEGVS 235 Query: 344 IQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLV 403 ++GRTG +TPVA++EPV + G + N TL+N I+ + +G V + Sbjct: 236 WEVGRTGKITPVAKVEPVELAGVTVQNCTLNNIGDIERKNLKHA---------LGSLVYI 286 Query: 404 KRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463 +R+ +VIP+++ + E + +P CP C + + + A C L Sbjct: 287 RRSNDVIPEILGKVTEEIDGEE--IKYPEHCPACGTELEQR--------GAHLFCPNRLG 336 Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK 523 C Q + R+ HF SRDA +IE + ++ D +R PAD++ L Sbjct: 337 CKPQLIGRITHFASRDAMDIETFSVMTAEQLYQQLD----VRDPADLYDLTYDDII---- 388 Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583 + FG+ NL D+I K + L F+F+LGI + G + LA+++ S Sbjct: 389 --QLPRFGEKKANNLLDAIEKSKERDLSSFLFALGIPNTGKTTTKVLAEHFRSLDKVMDA 446 Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP-----SIGR 638 + LI +P VG I+A +I F+++P I ++ + K G+ Sbjct: 447 V----------VEELIALPDVGGIVADSIYTFFRDPIMIESIRRMKKAGVQAQMEAEEGK 496 Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698 E + K +V TGTL + R +A + + LGA V+ +S+KTDI+I G+N GSKL Sbjct: 497 AEIDPGHPFYGKTIVLTGTLSSMSRDEAAKKLESLGAKVTGSVSKKTDIVIAGENAGSKL 556 Query: 699 EKAQQLGVKIMN-EEQFLFLLQ 719 KA+QLG+++++ E++ L LL Sbjct: 557 AKAEQLGIRVIDNEDELLHLLD 578 >gi|47169437|pdb|1V9P|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase gi|47169438|pdb|1V9P|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase Length = 584 Score = 368 bits (945), Expect = 2e-99, Method: Composition-based stats. Identities = 207/630 (32%), Positives = 328/630 (52%), Gaps = 49/630 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E+AR+ ++ L I YH+ YY + P I D+EYD L R + FP+ P Sbjct: 1 MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEFK---SP 57 Query: 72 NGPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G + V H SL+ + E++ F R+ R +K +T+ Sbjct: 58 DSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERLERALGRK--RPFLYTV 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K+DG + + YE+G V+ A RGDG GE+V+ + IPTIPR L P+ +EVRGE Sbjct: 116 EHKVDGLSVNLYYEEGVLVFGATRGDGEVGEEVTQNLLTIPTIPRRLKGV-PDRLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VY+ FL LN+E+ G K + NPRNAA+G LR+ +P R L + LG E Sbjct: 175 VYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLEE 234 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K QYE+L ++ GFPV +G +A G+ Y + R LP++ DG+V K+D+ Sbjct: 235 SGLKSQYELLLWLKEKGFPVEHGYEKALGAEGVEEVYRRFLAQRHALPFEADGVVVKLDD 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +L ++LG AR+PR+ +++KF ++ TRLLD+ Q+GRTG +TPV LEPV I G+ + Sbjct: 295 LALWRELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGSEV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + TLHNE YI+ L DIR+GD VLV +AG VIP+V+ ++ R + +P Sbjct: 355 SRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGEERPI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 +P CP C R+V++ HRC L C A++ E ++H+ SR A +IEGLG+ Sbjct: 404 RWPETCPECGHRLVKE--------GKVHRCPNPL-CPAKRFEAIRHYASRKAMDIEGLGE 454 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + +R AD++ L++ + G+ S NL I + ++ Sbjct: 455 KLIERLLEK----GLVRDVADLYHLRKEDLLG------LERMGEKSAQNLLRQIEESKHR 504 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 LER +++LG+ VG +AR+LA+ + + + + + Sbjct: 505 GLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELLEVEEVGEL----------T 554 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR 638 A+AI+E ++P V L + + Sbjct: 555 ARAILETLKDPAFRDLVRRLKEAGVSMESK 584 >gi|320007473|gb|ADW02323.1| DNA ligase, NAD-dependent [Streptomyces flavogriseus ATCC 33331] Length = 698 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 194/714 (27%), Positives = 312/714 (43%), Gaps = 84/714 (11%) Query: 39 SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98 + + D YD L R A P P K+ G V H++P LSL Sbjct: 33 GESTLDDDAYDRLVRAIAAYEEEHPQEVLDA---SPTGKVAGGAVSG--DVPHTVPMLSL 87 Query: 99 EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158 + +++ E + + R + +++EPK+DG + RY +G RGDG Sbjct: 88 DNVFSAEQFVTWTASVERRIGRPV---AAWSVEPKLDGLAVAARYRQGVLEQLITRGDGT 144 Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218 +GEDVS I + +P L P +E+RGE+ ++ F A N G P+ANPRN Sbjct: 145 AGEDVSHAIGTVLGLP--ERLGAPATLEIRGEILMTTEQFEAANAVRTEHGAAPFANPRN 202 Query: 219 AASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK------GQYEMLQKMRCLGFPVNNGV 272 A+G LR + F L E+L+ + +G Sbjct: 203 GAAGTLRAKDRPYRVEMTFFAYGALALPDSGELTDTLAGLPHSEVLEYVAGIGVHTAADT 262 Query: 273 ----RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 R T + + ++ ++R++LP+ IDG+V K D + Q+ G R+PRW I++ Sbjct: 263 AVAPRTVTTVEEVQAGVEDIAALRASLPFGIDGIVIKADLAADQRDAGSGTRAPRWAIAY 322 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388 K + TRLL ++ +GRTGI+ P A LEPV I G+ ++ ATLHN I Sbjct: 323 KLPAVEKVTRLLGVEWNVGRTGIIAPRAVLEPVEIDGSTVSYATLHNPADITR------- 375 Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448 RD+R+GD V+V +AG++IP++ + + R + QP FP CP C S + Sbjct: 376 ----RDLRLGDHVMVYKAGDIIPRIEAPVAHLRTGEEQPIEFPEACPRCGSEIDASEQ-- 429 Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508 RCT G C + + + + RD +IEGLG ++ A ++ A Sbjct: 430 ------RWRCTRGRDC--RLVASISYAAGRDQLDIEGLGTTRVVQLVD----AGLVQDFA 477 Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 D+FTL+R Q S + G+ S NL +I + L R +LG+R G ++R Sbjct: 478 DLFTLERDQLLS------LDRMGETSTDNLLAAIGAAASRPLSRVFCALGVRGTGRSMSR 531 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 +A+++ S A D +L +V +G A A+V Q + L Sbjct: 532 RIARHFASMDRIAAA----------DVEALQQVDGIGKEKAAAVVRELQELA--PLIGKL 579 Query: 629 LKEVSPS-----------------IGRHEKNVSSEIENKKLVFTGT----LQKIQRHKAQ 667 + + +V TG L+K+ R++ Sbjct: 580 VAAGVNMTEPGATPPPEPGAAQEGEAEESATSGLPLAGMTVVVTGAMTGALEKLSRNEMN 639 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 E + + G S+ +S++T +++ G+ GSK KA+ LGV+I E+F L+Q + Sbjct: 640 ELIERAGGKSSSSVSKRTSLLVAGEKAGSKRTKAEDLGVRIAAPEEFAELVQAH 693 >gi|195941083|ref|ZP_03086465.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. EC4024] Length = 504 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 194/541 (35%), Positives = 308/541 (56%), Gaps = 42/541 (7%) Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +EVRGEV++ + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+ Sbjct: 1 MEVRGEVFLPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGV 60 Query: 244 GKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G L + + G PV+N V+ ++ ++++Y++++ R TL +DIDG+ Sbjct: 61 GILEGGDLPDTHLGRLLQFKEWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGV 120 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KV+ +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV Sbjct: 121 VIKVNSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQ 180 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G L++NATLHN D I L +R+GD+V+++RAG+VIP+VV+++ +ER Sbjct: 181 VAGVLVSNATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVESERP 229 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 D + FP+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A + Sbjct: 230 ADTRAIEFPAHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMD 283 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 ++G+G + +D + E + PAD+FTL K+ + G S N+ +++ Sbjct: 284 VDGMGDKIIDQLVEKE----YVHTPADLFTLTA------GKLTGLDRMGPKSAQNIVNAL 333 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 +N + RF+++LGIR VG A LA Y+ + + L +VP Sbjct: 334 EAAKNTTFARFLYALGIREVGEATAAGLAAYFGTLDALEKAT----------IDELQKVP 383 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQ 659 VG ++A + F+ N + LL++ + + + + S K +V TG+L Sbjct: 384 DVGIVVATHVYNFFAEESNREVIGKLLEQGIHWPAPVVVNAEEIDSPFAGKTVVLTGSLS 443 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ R A+ + LGA V +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL Sbjct: 444 QLSRDDAKARLVALGAKVVGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLG 503 Query: 720 Q 720 Sbjct: 504 D 504 >gi|122879187|ref|YP_201049.6| NAD-dependent DNA ligase LigA [Xanthomonas oryzae pv. oryzae KACC10331] gi|166216280|sp|Q5H057|DNLJ_XANOR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 841 Score = 366 bits (940), Expect = 6e-99, Method: Composition-based stats. Identities = 220/674 (32%), Positives = 333/674 (49%), Gaps = 89/674 (13%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L + I D YY + P I D++YD L R + +P+L + + P ++ Sbjct: 7 ERARELRRRIENADHRYYDLADPEITDAQYDQLFRELQELEQKYPELVTA---DSPSMRV 63 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + S KV HSIP LSL ++ +++ F+ RI+R N + F++EPK DG Sbjct: 64 GGAVRKSFVKVRHSIPMLSLANAFDEVEVKNFVDRIFRRMGS--SNPLEFSVEPKFDGLA 121 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKND 197 I++RYE GKFV RGDG GEDVS IR I ++P L N P I+EVRGEVY+ ++ Sbjct: 122 ISLRYELGKFVQGVTRGDGDVGEDVSENIRTIRSVPLKLKGNNVPAILEVRGEVYMPRDG 181 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG----------KT 246 F N +A G K ANPRN A+G LR+L+ R L+FF +G+G + Sbjct: 182 FSEFNKRAMARGEKLLANPRNGAAGSLRQLDSRISAQRPLSFFAYGVGLIQVEQDLFEEI 241 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + A ML ++R GFPV++ V G+++YY + R LP+DIDG+VYK+ Sbjct: 242 PQSIASTHSAMLAQLRAWGFPVSSLVEVVQGSDGLLAYYQRIGEARDGLPFDIDGVVYKL 301 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ + Q+++G +R+PRW ++HKF ++ ST + I+IQIGRTG TPVARL+PV++ G Sbjct: 302 DDLAGQREMGFVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGV 361 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++TNATLHN D I L D+RVGD V+V+RAG+VIP+V ++ ++R P Q Sbjct: 362 IVTNATLHNADQIARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRPPATQ 410 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + P+ CP+C S +VR+ A RC+G L C AQ+ E +HFVSR A +++GL Sbjct: 411 SWQMPTQCPVCGSEIVREEG------QAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGL 464 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++ ++ S ++ AD++ L Q I + Sbjct: 465 GEKFIEVLVDS----GVVQGVADLYLLTVDQLLQLRMISTAESPHAFLREAREHLASGAY 520 Query: 547 NISLERFIFSLGIRHVGAE------IARSLAKYYLSYQ------------NFAQEINNII 588 LE + +G+ G A L ++ N + I Sbjct: 521 AQ-LEATLVGIGVDLAGEREVPQTWQADLLRAGLPTFDWNRKKIATKWAENLIEAIETSR 579 Query: 589 AHNND--------------------------------DWLSLIRVPLVGDIIAQAIVEFY 616 + W RVP +G +A+++ F+ Sbjct: 580 DTTLERFLFALGIEHVGESTAKALSAWFGDLDLIRHLPWPLFKRVPDIGGEVARSLGHFF 639 Query: 617 QNPRNICAVEALLK 630 P N A++ LL Sbjct: 640 DQPGNQKAIDHLLA 653 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + L I V A +A + S + V +A+ Sbjct: 675 ANLLEDLEIPKVTPIRAAQIATAFGSIDALRNGGPEPLVEA-----------GVPQSVAE 723 Query: 611 AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 ++ + P N + L + + + + ++ + +V TGTL + R A+ Sbjct: 724 SLATWLLVPANDTLAVKAQKKLSALLAMMPEAGEEKTGPLDGQTVVITGTLAALTRDAAK 783 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + + LGA V+ +S+KT ++ G+ GSKL+KAQ LGV+I +E + L L ++ Sbjct: 784 QRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLGEHG 838 >gi|84623945|ref|YP_451317.1| NAD-dependent DNA ligase LigA [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|123752764|sp|Q2P334|DNLJ_XANOM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|84367885|dbj|BAE69043.1| DNA ligase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 841 Score = 366 bits (940), Expect = 6e-99, Method: Composition-based stats. Identities = 220/674 (32%), Positives = 333/674 (49%), Gaps = 89/674 (13%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L + I D YY + P I D++YD L R + +P+L + + P ++ Sbjct: 7 ERARELRRRIENADHRYYDLADPEITDAQYDQLFRELQELEQKYPELVTA---DSPSMRV 63 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + S KV HSIP LSL ++ +++ F+ RI+R N + F++EPK DG Sbjct: 64 GGAVRKSFVKVRHSIPMLSLANAFDEVEVKNFVDRIFRRMGS--SNPLEFSVEPKFDGLA 121 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKND 197 I++RYE GKFV RGDG GEDVS IR I ++P L N P I+EVRGEVY+ ++ Sbjct: 122 ISLRYELGKFVQGVTRGDGDVGEDVSENIRTIRSVPLKLKGNNVPAILEVRGEVYMPRDG 181 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG----------KT 246 F N +A G K ANPRN A+G LR+L+ R L+FF +G+G + Sbjct: 182 FSEFNKRAMARGEKLLANPRNGAAGSLRQLDSRISAQRPLSFFAYGVGLIQVEQDLFEEI 241 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + A ML ++R GFPV++ V G+++YY + R LP+DIDG+VYK+ Sbjct: 242 PQSIASTHSAMLAQLRAWGFPVSSLVEVVQGSDGLLAYYQRIGEARDGLPFDIDGVVYKL 301 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ + Q+++G +R+PRW ++HKF ++ ST + I+IQIGRTG TPVARL+PV++ G Sbjct: 302 DDLAGQREMGFVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGV 361 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++TNATLHN D I L D+RVGD V+V+RAG+VIP+V ++ ++R P Q Sbjct: 362 IVTNATLHNADQIARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRPPATQ 410 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + P+ CP+C S +VR+ A RC+G L C AQ+ E +HFVSR A +++GL Sbjct: 411 SWQMPTQCPVCGSEIVREEG------QAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGL 464 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++ ++ S ++ AD++ L Q I + Sbjct: 465 GEKFIEVLVDS----GVVQGVADLYLLTVDQLLQLRMISTAESPHAFLREAREHLASGAY 520 Query: 547 NISLERFIFSLGIRHVGAE------IARSLAKYYLSYQ------------NFAQEINNII 588 LE + +G+ G A L ++ N + I Sbjct: 521 AQ-LEATLVGIGVDLAGEREVPQTWQADLLRAGLPTFDWNRKKIATKWAENLIEAIETSR 579 Query: 589 AHNND--------------------------------DWLSLIRVPLVGDIIAQAIVEFY 616 + W RVP +G +A+++ F+ Sbjct: 580 DTTLERFLFALGIEHVGESTAKALSAWFGDLDLIRHLPWPLFKRVPDIGGEVARSLGHFF 639 Query: 617 QNPRNICAVEALLK 630 P N A++ LL Sbjct: 640 DQPGNQKAIDHLLA 653 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + L I V A +A + S + V +A+ Sbjct: 675 ANLLEDLEIPKVTPIRAAQIATAFGSIDALRNGGPEPLVEA-----------GVPQSVAE 723 Query: 611 AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 ++ + P N + L + + + + ++ + +V TGTL + R A+ Sbjct: 724 SLATWLLVPANDTLAVNAQKKLSALLAMMPEAGEEKTGPLDGQTVVITGTLAALTRDAAK 783 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + + LGA V+ +S+KT ++ G+ GSKL+KAQ LGV+I +E + L L ++ Sbjct: 784 QRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLGEHG 838 >gi|282877678|ref|ZP_06286493.1| NAD-dependent DNA ligase domain protein [Prevotella buccalis ATCC 35310] gi|281300250|gb|EFA92604.1| NAD-dependent DNA ligase domain protein [Prevotella buccalis ATCC 35310] Length = 657 Score = 366 bits (940), Expect = 6e-99, Method: Composition-based stats. Identities = 165/712 (23%), Positives = 299/712 (41%), Gaps = 65/712 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ R+++ L +E++ D YY + D E+DA + + P Sbjct: 1 MT-NDLRQKMQQLVEELNRASDNYYSGRTESMTDFEWDAKFDELKRLEQE----SGLVLP 55 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P + K H P LSL K E+L K+ L Sbjct: 56 DSPTTNVSDGTITG-QKEAHEFPMLSLAKTKKPEELVKWAE------------ERPIWLS 102 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG + + Y+ GK RG+GH G +++ AI IP ++ + +RGE Sbjct: 103 WKLDGLTLVVTYDDGKLTKVVTRGNGHVGTNITHLAPAIQGIP--ATIKNSGHLVIRGEA 160 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 IS DF N E + YANPRN ASG L + ++ R ++ ++ Sbjct: 161 VISYADFEVFNMEA----DEAYANPRNLASGSLTLKDVEEVKRRKIQWIPFTLVFTDEAI 216 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQAN---TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E L +R +GF V R ++ + P+ +DGLV D+ Sbjct: 217 NSWGERLDWLREMGFNVVKHERISDPSIHNVNQAIEQWTNLVTHNQCPFPVDGLVITFDD 276 Query: 309 FSLQKQLG-ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + R ++ K+ ++ A+T L I+ + ++PVA +PV + G Sbjct: 277 TAFAATGSITGHHATRAGLAFKWEDEAATTELEYIEWSCAAST-ISPVAVFKPVELEGTT 335 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + A+L N + L G G + V +A ++IPKV+ ++ Sbjct: 336 VKKASLCNISECERLGIGG----------PGSVLSVIKANKIIPKVIKVVQTV-----GA 380 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P CP+C + D++ +G AC A+QL++ FVS++ +I+G+ Sbjct: 381 LEIPHECPVCHHQTRIDISKASGTRTLH---CTNEACPAKQLKKFNRFVSKNGMDIDGIS 437 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 +Q L F + ADI+ L +I ++ GFG+ S N+ SI K R Sbjct: 438 EQTLAKFIN----LGWLNTYADIYRLPNY----AQQIASLEGFGNKSAGNMMRSIEKSRT 489 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 + +F+++L I G + + L Y ++ ++ I D + +P +G Sbjct: 490 VEARKFLYALTIPMCGVDACKRLLDAYSLHELISKAIEA------DTPEAFANIPGIGPE 543 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKA 666 + ++V+++Q N V+ LLK ++ + + E V TG + + R + Sbjct: 544 TSASVVKWFQVEANRNVVDDLLKTLNVE-QPSTQPTGARCEGLTFVITGDVHHYKNRAEL 602 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLF 716 + Y+ G V+ +S+ T+ +I ++ K +KA++LG++I++E+QF Sbjct: 603 KAYIENQGGHVTGSVSKSTNYLINNNVNSTSGKNKKAKELGIEIISEDQFRE 654 >gi|315452902|ref|YP_004073172.1| DNA ligase [Helicobacter felis ATCC 49179] gi|315131954|emb|CBY82582.1| DNA ligase [Helicobacter felis ATCC 49179] Length = 733 Score = 366 bits (939), Expect = 9e-99, Method: Composition-based stats. Identities = 210/754 (27%), Positives = 344/754 (45%), Gaps = 96/754 (12%) Query: 30 YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89 + YY P++ D EYD L ++ HA P+ P ++G + L K Sbjct: 17 QYAHHYYVLDDPLVSDFEYDTLYQQIQDYEHAHPEQILEH---SPTQRVGDALLSYLPKH 73 Query: 90 THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149 TH SL+ ++++E L+ +I RI++ + FT PK+DG + + Y++GK V Sbjct: 74 THLERMWSLDNVFDLEGLQTWIARIFKVYPHA-----RFTCSPKLDGVSLNLFYDQGKLV 128 Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209 A RG+G GE V+ + IP+IP L + E +E+RGEV I DF +N E + Sbjct: 129 SATTRGNGIEGELVTHIAKTIPSIP--LRIAPTEPLEIRGEVTIENADFEKINAERAKLN 186 Query: 210 RKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268 + +ANPRNAA+G LR+L+P R L+F GLG+ + + M + P+ Sbjct: 187 QPLFANPRNAAAGSLRQLDPRISAKRKLSFTPWGLGRCAPTLPSFKAMMDCLLENHFLPM 246 Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 + I Y E+ + R +DG+V VD+F++QK+LG ++PR+ I++ Sbjct: 247 PFS--LCGSVEEIQQVYTELHAQRERAKVGMDGMVVVVDDFAMQKELGFTLKAPRFAIAY 304 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388 KF + TRLL++ Q+GR+G +TPVARLEPVN+ GA I ATL++ I+ Sbjct: 305 KFPALEKHTRLLEVIAQVGRSGAITPVARLEPVNLDGAQIARATLNSYTDIQ-------- 356 Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV------- 441 +D+++ D V+V R+G+VIP+V+ +V+ R +P P+ CP C+S + Sbjct: 357 ---QKDLQLNDMVVVLRSGDVIPQVIKPLVHLRDGSQKPIIPPNHCPSCESLLEQQPLNI 413 Query: 442 ----------------------------------------------VRDLNPKTGKLVAA 455 A Sbjct: 414 CPQCHLPLLLKDKPNFCPSCARFAPHAHLKNARSCPSCAQALEYKPFCYRCNLDLSAHAR 473 Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQR 515 C +CSA+ L +F S+ I GLG + + +++ I +D++TL+ Sbjct: 474 ALCCVNPSCSAKLHASLVYFASKQGLEIAGLGDKVVKQLLEAK----LISQISDLYTLRL 529 Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575 + + G+ NL D+I K ++ L RFI +LGI ++G ++ LA Sbjct: 530 ED------LLQLEGWKHKRAQNLLDAIAKTKHAPLWRFINALGIENIGKGASKKLAGILG 583 Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGD-IIAQAIVEFYQNPRNICAVEALLKEVSP 634 + F Q+ + + GD A+A EF + + L++ + P Sbjct: 584 -LEVFDQDYSGYQRAFKKIFQGARE-DQKGDYKSARAFWEF--VQTHRAKIAHLMRLIEP 639 Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694 +I + K +V TG+ I R ++Y+ LGA V LS KTD+++ GD P Sbjct: 640 TIAEKRAPQCGFFQGKVVVITGSFS-IPRDALRQYLEDLGAEVKGHLSAKTDLLLCGDKP 698 Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIH 728 GSKLE+A++ + IM + Q+ + Sbjct: 699 GSKLEEAKKHNISIMGIDALRV---QFKKSTPPP 729 >gi|227874422|ref|ZP_03992603.1| DNA ligase (NAD(+)) [Oribacterium sinus F0268] gi|227839738|gb|EEJ50187.1| DNA ligase (NAD(+)) [Oribacterium sinus F0268] Length = 692 Score = 366 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 182/716 (25%), Positives = 317/716 (44%), Gaps = 70/716 (9%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + + + L ++ YYQ + I+ + EYD ++ + Sbjct: 37 DKQDSIARMKELISFLNEAAKAYYQEGREIVSNLEYDKAYDTLLSLEKE----SGVVLSG 92 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +G + +L K H P LSL+K ++EDL+ F+ L Sbjct: 93 SPSQNVGYAVATALPKEAHETPMLSLDKTKSVEDLQSFLQ------------GQEGILSW 140 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG I + Y++GK + A RG+G GE V+ + +P L + + VRGE + Sbjct: 141 KLDGLTIVLHYQEGKLLKAVTRGNGIIGELVTENAKTFQNLP--LQIPFKGHLVVRGEAF 198 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS---- 247 IS +DF +N+E+ G Y NPRN SG +R+L+P R + + L Sbjct: 199 ISYSDFERINEELPEEG-AKYKNPRNLCSGSVRQLDPKVTKERRVQISLFSLVLAEEEGK 257 Query: 248 -EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 F E + + GF + R+ I E + + DGLV Sbjct: 258 APDFHNQHEEEFRFLEKQGF--SVVHRKMVNAENIQEAVAEFSKLMPKNDFPSDGLVLLY 315 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ + + LG A+ PR I+ K+ +++ +T+LL ++ RTG++ PVA PV + G Sbjct: 316 NDIAYGESLGRTAKFPRNAIAFKWQDEEETTKLLSVEWSPSRTGLINPVAIFTPVELEGT 375 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++ A+LHN Y + L + +GD + V +A +IP++ + + Sbjct: 376 VVSRASLHNITYCEDLA-----------LGIGDEITVYKANMIIPQIGENKT-----KSG 419 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP CQ + +T C A+++++ FVSRDA NIEGL Sbjct: 420 NLEIPKHCPACQGETKIVKDKETK-----MLYCTNPHCPAKRIKQFALFVSRDALNIEGL 474 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 + L+ + I+ D+F+L++ ++ +I + GFG S + ++I K + Sbjct: 475 SEMTLEKWLGR----GFIQEFPDLFSLEKYRE----EIIGMEGFGLKSFEKIQENIEKAK 526 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L R ++ LGI +G R LA+ + + + +++V +G Sbjct: 527 TSNLGRLLYGLGIEGIGVSNGRMLAEAF---------SQDPYKLMDATKEEILQVKGIGQ 577 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHK 665 ++A +I E++Q N V LL + E+ I K V TG + R Sbjct: 578 VLADSIAEYFQKEENRRIVLELLSILHLEKEEKEEKSG--ISGKHFVITGAVHHFPNRKA 635 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + + G S+ +S+ TD +I D+ SK +KA++LG+ I+ EE+FL LL+ Sbjct: 636 LEEEIRKAGGQSSSSVSQNTDYLINNDSTSGSSKNKKAKELGIPIITEEEFLKLLE 691 >gi|332704021|ref|ZP_08424109.1| DNA ligase [Desulfovibrio africanus str. Walvis Bay] gi|332554170|gb|EGJ51214.1| DNA ligase [Desulfovibrio africanus str. Walvis Bay] Length = 771 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 209/622 (33%), Positives = 331/622 (53%), Gaps = 53/622 (8%) Query: 113 RIYRFWQKKDDNSIF-----FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACI 167 R+ ++ S+ F ++PK+DG + YE G+ V AA RGDG GEDV+ + Sbjct: 179 RVLAELSEQTWQSLPALLGTFWIDPKLDGLALEAIYENGRLVRAATRGDGEIGEDVTQNV 238 Query: 168 RAIPTIPRVLS--LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILR 225 R + +P VL +P ++EVRGEV + K DF ALN+ G K +ANPRNAA+G +R Sbjct: 239 RTVKNLPLVLHDGGVMPRLLEVRGEVVMRKADFHALNERQAERGEKIFANPRNAAAGSVR 298 Query: 226 RLNPT-DITRYLNFFVHGLGKTSE---IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI 281 +L+P TR L FF +G+G+ +GQ E++ + LGF + RQ + Sbjct: 299 QLDPRITATRPLRFFAYGIGRVDWNGAPGWQGQDEIIAGLAQLGFAIPPEARQCRHPDEV 358 Query: 282 VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341 + + +++ R LP++IDGLV K++ LQ+ LG A++PRW ++ KF QA T L D Sbjct: 359 AASFERLQAGREALPFEIDGLVAKLNCLELQRFLGFTAKAPRWALALKFPAYQAETLLRD 418 Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401 I IQ+GRTG+LTPVA L+PV++GG +++A+LHNE YI+ +D+R+GDRV Sbjct: 419 IRIQVGRTGVLTPVAELDPVSVGGVTVSSASLHNESYIR-----------EKDLRLGDRV 467 Query: 402 LVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461 L++RAG+VIP+VV + +R Q ++FP CP+C + V+ + C Sbjct: 468 LIQRAGDVIPEVVRPLAEKRTGGEQEYTFPPECPVCHTEVILASEERRIWKCVNISCPA- 526 Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521 + + HFVS+ +IEGLG++ ++ +R PAD+FTL++ + Sbjct: 527 -----VIRQSIIHFVSKAGLDIEGLGRKWVEILIDK----GMVRSPADLFTLKKTDLLT- 576 Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISL-ERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580 + GD S +N +SI + + + R I +LGI HVG E AR LA + Sbjct: 577 -----LERMGDKSASNFVESIRQAKEEAKLPRLIAALGIPHVGEETARLLASRFRDLDAL 631 Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 L +P + D I+++IV+F+ N N + + Sbjct: 632 GAATR----------QELEELPGISDKISESIVDFFLNEANRSLLGRFKEIGLWPSNAPA 681 Query: 641 KNVSS----EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696 + K+++FTG L + R +A+ + Q G + +S+ D ++VG+NPGS Sbjct: 682 VAPEGKTKLPLAGKRVLFTGGLPSMSRSEAETLLEQAGGTAAKSISKNVDYVVVGENPGS 741 Query: 697 KLEKAQQLGVKIMNEEQFLFLL 718 KL+KA +LG+ ++ E+FL L+ Sbjct: 742 KLDKADKLGLAVIGFEEFLRLV 763 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 3/103 (2%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 E R+ + L +E+ +H+ YY P+I D+EYD + R + P+L D + Sbjct: 5 PEDIRQRVERLRKELHFHNYRYYVLDAPVISDAEYDRMMRELQDLEEHNPEL---RDTSS 61 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR 116 P ++G + H++ SL+ ++++ R+F+ R+ R Sbjct: 62 PTQRVGAAPAEGFAQYRHALRMYSLDNAMSVDEWREFVARVGR 104 >gi|254383856|ref|ZP_04999203.1| DNA ligase [Streptomyces sp. Mg1] gi|194342748|gb|EDX23714.1| DNA ligase [Streptomyces sp. Mg1] Length = 696 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 185/725 (25%), Positives = 297/725 (40%), Gaps = 76/725 (10%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R E + + + YY ++ D+ YD L+ A P P P Sbjct: 25 RSEYEAALRRLREASQAYYGDGDSVMDDASYDRLRLALLAWETEHPAEVA---PGSPTTL 81 Query: 78 I--GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 + G V H+ LSL+ +++ E L + + R + FT+EPKID Sbjct: 82 VADGAAPAGD---VAHTTRLLSLDNVFDAEGLVAWGASVERRLGRAPAGG--FTVEPKID 136 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + RY G+ V RGDG GED+S I I +P +L+ +EVRGEV ++ Sbjct: 137 GAAVAARYRGGRLVRIVTRGDGSQGEDISHVIGQIDGLPELLAG--EATVEVRGEVAFTQ 194 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL----GKTSEIFA 251 F N +A G +ANPRN +G LR + R F+ +G G Sbjct: 195 EQFEVANAVRVAHGAPVFANPRNGTAGTLRAKDRPYRLRMT-FWAYGAVELEGVPFLPAG 253 Query: 252 KGQYEMLQKMRCLGFPVNNGV----RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 Q E L + G + G + M ++R+ LP IDG+V K++ Sbjct: 254 ATQAEALAAVAAAGVRTTAAAGAGLHIVDDLAGAQQAVDAMAAMRAELPVGIDGVVIKLN 313 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + Q+ +G R P W I+ K + T L D+ ++GRTG+L P A L PV I G+ Sbjct: 314 DTAEQEAIGSGTRFPYWAIAVKLPAVERQTVLEDVVWEVGRTGVLAPTAVLAPVEIDGST 373 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +T ATLHN I+ RD+ +GD V V +AG++IP+V + R A+P Sbjct: 374 VTRATLHNPADIRR-----------RDLHIGDTVTVYKAGDIIPRVQAAVALLRPAGAKP 422 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P CP C + RC S +++ R+ +I+GLG Sbjct: 423 VPLPETCPRCGGEIN--------TAQERWRC--AKGTSCALPALIEYAAGREMLDIDGLG 472 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 K + S D + AD+FTL Q T+ + L + I + Sbjct: 473 KTYVAALVDSGD----VTDVADLFTLTLEQLTAASG-------SSRRAAKLAEQIEAAKA 521 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 L R +LG+ G ++R +A+++++ + + D + V +G Sbjct: 522 RPLSRVFCALGVLGTGRSMSRRIARHFVTMEAIRRA----------DAAEMQDVEGIGPE 571 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE---KNVSSEIENKKLVFTGT----LQK 660 A IVE Q ++ L+ + ++ K +V TG L+ Sbjct: 572 KAPVIVE--QVAALAPVIDKLIAAGVTLHEPEASATASAGGPLDGKVVVVTGKMAGPLEG 629 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----NPGSKLEKAQQLGVKIMNEEQFLF 716 R + + + G + +S +T +++ P SK KA +LGV+++ E F Sbjct: 630 FGRTEMNALIEKAGGRAGSGVSARTSVLVCAPSASGKPSSKAVKAAELGVEVLTPEAFAE 689 Query: 717 LLQQY 721 L+ Y Sbjct: 690 LVADY 694 >gi|282881715|ref|ZP_06290378.1| DNA ligase domain protein [Prevotella timonensis CRIS 5C-B1] gi|281304474|gb|EFA96571.1| DNA ligase domain protein [Prevotella timonensis CRIS 5C-B1] Length = 655 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 163/708 (23%), Positives = 286/708 (40%), Gaps = 64/708 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 ++ + L +++ D YY ++ D E+DAL + + + P+ P Sbjct: 2 DIQQRMRKLVDKLNLASDNYYGGKPELMTDYEWDALFDELKQLEMS----SGVVLPDSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 N++ K H P LSL K DL K+ L K+D Sbjct: 58 NRVSDGEMNG-KKEAHEFPALSLAKTKQPADLVKWAE------------GKPVWLSWKLD 104 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + Y+ G+ RG+GH G +++ +AI +P ++ +RGE IS Sbjct: 105 GLTLVATYDDGRLSKVVTRGNGHIGTNITHLAKAIGGMP--ATIPFQGHTVIRGEAVISY 162 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG- 253 DF N YANPRN ASG L + ++ R++ + L + Sbjct: 163 ADFEVFN----LESDDAYANPRNLASGSLTLKDVKEVERRHIQWIPFTLVFVEQEIKTWG 218 Query: 254 -QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q + L++ + V K + P+ +DGLV D+ S Sbjct: 219 EQMDWLEQQGFHPVERERINEPSLPVVEQVIERWTEKVTQKRNPFPVDGLVVVFDDISFA 278 Query: 313 KQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 R ++ K+ ++ A+T L I+ + ++PVA PV + G + A Sbjct: 279 ATGSVTGHHATRAGLAFKWQDEAATTTLRHIEWSCAAST-ISPVAVFAPVELEGTTVQRA 337 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +L N K L G G + V +A ++IPKV+ +I + F P Sbjct: 338 SLCNISECKRLGIGG----------PGSTLSVIKANKIIPKVIRVIQSV-----GTFDIP 382 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C V + +G L AC A+Q+++ FVS+ NI+G+ +Q L Sbjct: 383 KSCPVCHHEAVVRESAVSGTLTLH---CTNEACPAKQIKKFDRFVSKAGMNIDGISEQTL 439 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 D F I ADI+ L ++ ++ GFG+ S+ N+ SI + R + Sbjct: 440 DKFIN----LGWIETYADIYRLSAH----AAELASLEGFGEKSMRNIMQSIEQSRTVEAH 491 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 F+++L I G ++ + L + Y + + + +P +G + + Sbjct: 492 HFLYALSIPLCGVDVCKRLLEAYPLAELISVATTAT------SLDAFAHIPGIGPEKSAS 545 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670 +V ++Q N V LL EV + + + V TG + + R + + Y+ Sbjct: 546 LVTWFQGEANQRIVNDLLSEVQIE-EPSLQPQGARCQGMTFVITGDVHHYKNRAELKSYI 604 Query: 671 TQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLF 716 G V+ +S+ T +I D + K +KA+ LG+ I++E++F+ Sbjct: 605 ESQGGKVTGSVSKSTTYLINNDVNSTSGKNKKAKDLGISIISEDEFVE 652 >gi|313678467|ref|YP_004056207.1| DNA ligase (NAD+) [Mycoplasma bovis PG45] gi|312950136|gb|ADR24731.1| DNA ligase (NAD+) [Mycoplasma bovis PG45] Length = 654 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 195/708 (27%), Positives = 341/708 (48%), Gaps = 55/708 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + A++ + SL +I+ + YYQ +KP + D EYD + + +P+ Sbjct: 1 MESKNAKELIKSLVDKINQWNYEYYQLNKPSVSDLEYDKALWELEKLEKEYPEFVLD--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+G + K H P LSL K ++ +D++ FI I + I F +E Sbjct: 58 DSPTFKLGSFASEKFTKFIHKKPMLSLAKAYSYDDIKSFINNISKIV---PAERINFNIE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK+DG I + Y+KGK V A RGDG GEDV+ I I +IP +N +EVRGEV Sbjct: 115 PKVDGLSIALHYKKGKLVKAVTRGDGTEGEDVTENIYQIKSIP--KLINYLNDLEVRGEV 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 +ISK++F +N+ + A + + + + R L+ F++ + + Sbjct: 173 FISKDNFKKINESNNFANARNAA-----SGTLRQLDSTIVAKRNLSAFLYEVVEPEMHNI 227 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q E L+ M+ L P N + + ++ I++ L YD DGLV K+++ + Sbjct: 228 NYQNEALEFMKKLNIPTNPFSKVVE-IEELEEAISDFAEIKNKLDYDSDGLVIKLNDLQM 286 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 ++LG+ ++ P+ I+ K+ + AS+ ++DI +GRTG +T +A + PV + + A Sbjct: 287 WEKLGKTSKFPKHSIAFKYDVEVASSTIVDILTSVGRTGKITYIANIHPVILNQTSVRAA 346 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN ++IK + +I + D V + +AGE+IPKV+ + ++ + D + Sbjct: 347 TLHNHNFIKDM-----------NININDEVNIIKAGEIIPKVISLKNSKNYVD--YYKKA 393 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C S ++ + C + + + HF SR+ NI GLG + Sbjct: 394 TNCPSCNSELIEFEG-------IVDQFCTNDECPEKNVNNIYHFASRNCMNIVGLGLSTV 446 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F+ I+ DIF+L + + ++ + +G+ V N+ +SI +N + Sbjct: 447 KDFYPK-----FIKKIKDIFSLYKYKS----ELILLPRYGEQKVDNILNSIESVKNKAFS 497 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + +F+LGI+H+G A+ ++ Y+++ + L +G I ++ Sbjct: 498 KVLFALGIKHIGQRAAKLISDNYVNFAEILNDSE---------LSKLKSTKNIGPKIIES 548 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 + E+ NP N + L + K +S+ V TGTL + R + + Sbjct: 549 LTEYINNPLNKDLLIYLDSI--FNYEGKTKAISNIFSGYSFVITGTLSE-PRSHFVKIIE 605 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + VSA +S +T ++ G GSKLEKA +LGVK++NEEQF LL+ Sbjct: 606 ENSGSVSASVSGRTSYVLAGSEAGSKLEKAYKLGVKVINEEQFYKLLE 653 >gi|126347877|emb|CAJ89597.1| putative DNA ligase [Streptomyces ambofaciens ATCC 23877] Length = 702 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 195/717 (27%), Positives = 320/717 (44%), Gaps = 89/717 (12%) Query: 39 SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98 + D+ YD L R A PD P+ P K+ G V H++P LSL Sbjct: 35 GSSPLDDATYDRLARGIAAWEAEHPDEVL---PDSPTGKVAGGAAEG--DVPHTVPMLSL 89 Query: 99 EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158 + +++ E+ + + R ++ D F + PK+DG + RY G+ RGDG Sbjct: 90 DNVFSPEEFLAWTVSLARRTGREVD---RFVVGPKLDGLAVAARYRAGRLTRLITRGDGT 146 Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218 +GEDVS I + +P L+ + +E+RGE+ ++ F N+ G +P+ANPRN Sbjct: 147 AGEDVSHAIGTVEGLPETLAEPV--TVEIRGEILMTTAQFEHANEVRTGHGGQPFANPRN 204 Query: 219 AASGILRRLNPTDITRYLNFFVHGLGKTS-------EIFAKGQYEMLQKMRCLGFPVNNG 271 AA+G LR F L + Q +++ LG + G Sbjct: 205 AAAGTLRARERAYTVPMTFFGYGMLPLPETDAVLAGRLDDLAQSDLMSMAAGLGVHTSAG 264 Query: 272 VRQ----ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327 T +V+ E ++R+ LP+ IDG+V K D + ++ G +R+PRW ++ Sbjct: 265 TAVPDVVVTTPEQVVARVRETAALRAELPFGIDGIVVKADLAADRRAAGSGSRAPRWAVA 324 Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387 +K + TRLL+++ +GRTG++ P LEPV I G+ IT ATLHN I Sbjct: 325 YKLPAVERITRLLEVEWNVGRTGVIAPRGVLEPVVIDGSTITYATLHNPADITR------ 378 Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447 R +R+GD V+V RAG+VIP++ + + R D +P +FPS CP C S + Sbjct: 379 -----RGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGDERPIAFPSVCPRCGSDID----- 428 Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507 RC G C + L + RD +IEGLG ++ + A + Sbjct: 429 ---TSQERWRCAQGRNC--HLVASLAYAAGRDQLDIEGLGATRVVQLVE----AGLVADL 479 Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567 AD+FTL R Q + G S NL ++ + L R + +LG+R G ++ Sbjct: 480 ADLFTLGREQLLG------LDRMGQTSTDNLLAALAAAKEQPLSRVLCALGVRGTGRSMS 533 Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 R +A+++ + + D ++ +V +G A +IV ++ Sbjct: 534 RRIARHFATMDHIRAA----------DADAMQQVEGIGPEKAPSIVAEIAELA--PLIDK 581 Query: 628 LLKEVSPSIGR------------HEKNVSSEIEN---------KKLVFTG----TLQKIQ 662 L E++ S + ++V TG +L+K+ Sbjct: 582 LAAAGVGMTEPGATPPPVTGADAEEEDGGSPVAAPGAAGPLAGMRVVVTGAMTGSLEKLS 641 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R++ E V + G S+ +SRKT +++ G+ GSK KA+QLG+++ E+F L+ Sbjct: 642 RNEMNELVERAGGHSSSSVSRKTTLVVAGEGAGSKRAKAEQLGIRLATPEEFAALVA 698 >gi|329937546|ref|ZP_08287104.1| DNA ligase [Streptomyces griseoaurantiacus M045] gi|329303422|gb|EGG47309.1| DNA ligase [Streptomyces griseoaurantiacus M045] Length = 697 Score = 364 bits (935), Expect = 3e-98, Method: Composition-based stats. Identities = 204/731 (27%), Positives = 318/731 (43%), Gaps = 93/731 (12%) Query: 31 HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90 YY + D YD L R A P+ P P K+ G V Sbjct: 18 ASAAYYADGTSALDDEAYDRLVRGIAAWEADHPEQVL---PGSPTGKVAGGAVEG--DVP 72 Query: 91 HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150 H++ LSL+ +++ E+ + + R F++EPK+DG + RY KG+ Sbjct: 73 HTVAMLSLDNVFSPEEFTAWTASLARRAG---HEVERFSVEPKLDGLAVAARYTKGRLER 129 Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210 RGDG +GEDVS I I +P L+ + +EVRGEV ++ F N+ A G Sbjct: 130 LITRGDGTAGEDVSHAIGTIEGLPVELAEPV--TVEVRGEVLMTTAQFEHANEVRTAHGG 187 Query: 211 KPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA-------KGQYEMLQKMRC 263 +P+ANPR A++G LR F L A + E++ + Sbjct: 188 QPFANPRGASAGSLRARERAYTVPMTFFGYGLLPLPGTDTALATRLADEAHSELMTRAAA 247 Query: 264 LGFPVNNGVRQ----ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 G A T ++ E+ ++R+ LP+ IDG+V K D + Q+ G + Sbjct: 248 YGINTTATTAVPGSTAGTVTEVLDRVREIAALRAELPFGIDGIVVKADLAADQRAAGSGS 307 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 R+PRW I++K + TRLL+++ +GRTGI+ P A LEPV I GA IT ATLHN I Sbjct: 308 RAPRWAIAYKLPAVEKITRLLEVEWNVGRTGIIAPRAVLEPVEIDGATITYATLHNPADI 367 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439 RD+R+GDRV+V RAG+VIP+V + + R + QP FP+ CP C + Sbjct: 368 TR-----------RDLRLGDRVMVHRAGDVIPRVEAPVAHLRTGEEQPIVFPAVCPRCGA 416 Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 + RC G C + L + RD +IEGLG ++ Sbjct: 417 GIDTGEQ--------RWRCENGRNC--HLVAALSYAAGRDQLDIEGLGHTRVVQLVD--- 463 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559 A + AD+F+L R Q + G+ S NL ++ + L R + +LGI Sbjct: 464 -AGLVTDLADLFSLTREQLLG------LERMGETSTDNLLAALETAKGRPLARVLCALGI 516 Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 R G ++R +A+++ + + D ++ RV +G A +IV Sbjct: 517 RGTGRSMSRRIARHFATMDHIRAA----------DAEAMRRVEGIGTEKAPSIVAELAEL 566 Query: 620 RNICAVEALLKEVSPS-------------------------IGRHEKNVSSEIENKKLVF 654 ++ L+ E++ + +V Sbjct: 567 A--PLIDRLVAAGVNMTEPGATPPAPEEPATGEQAEDTRGGAEAAEESPGGPLAGMTVVV 624 Query: 655 TGT----LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 TG L+K+ R++ E V Q G S+ +SRKT +++ G+ GSK KA+ LG+++ Sbjct: 625 TGAMTGRLEKLSRNRMNELVEQAGGRSSSSVSRKTTLVVAGEGAGSKRAKAESLGIRLAT 684 Query: 711 EEQFLFLLQQY 721 E+F LL + Sbjct: 685 PEEFAALLADH 695 >gi|54024876|ref|YP_119118.1| putative DNA ligase [Nocardia farcinica IFM 10152] gi|81374723|sp|Q5YVN7|DNLJ1_NOCFA RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 1 gi|54016384|dbj|BAD57754.1| putative DNA ligase [Nocardia farcinica IFM 10152] Length = 663 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 213/720 (29%), Positives = 329/720 (45%), Gaps = 78/720 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 A + + L I YY P++ D+EYDA++ A+ A P+LA DPN PL Sbjct: 2 DAGERIRELADRIVELRTAYY-EGAPLVADAEYDAVEDELRALIAAHPELA--PDPN-PL 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +++G L V HS P LSLEK E + F R + PK+D Sbjct: 58 DQVGAPAVLH-APVRHSRPMLSLEKATTPEQVAAFFER---------FPGQPVVVMPKLD 107 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + YE G+ V A RGDG +G+DV+ +RA+ P +EVRGE + + Sbjct: 108 GLSLALVYEDGRLVRAVTRGDGTTGDDVTMLVRALVDGVPEQIDV-PGRVEVRGEAVMLR 166 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQ 254 + FLA N KP NPRNAA+G LR +P R L FF L A Sbjct: 167 STFLAYNAA---HPDKPLINPRNAAAGTLRAKDPATVAERRLRFFGFDLDTAEGGAAADL 223 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L+ + G +R + +++ R+ L YDIDG V ++ + Sbjct: 224 GEGLRALGIAGA----AMRMCADAEQAQAAITDIERGRNDLDYDIDGAVLRLADRDAYAA 279 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 G R+ SPR ++ KFA ++ +T L + +G+TG + PVARLEPV +GG +T ATL Sbjct: 280 AGTRSNSPRGALAFKFAAEEKTTVLEAVTWDVGKTGKIVPVARLEPVFVGGTTVTKATLA 339 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI-IVNERHPDAQPFSFPSF 433 N+ I+ RDI+VGD VLV+RAG+VIP V + ++R P+ Sbjct: 340 NQQVIR-----------ARDIKVGDTVLVRRAGDVIPFVAGVLDASKRTGAEVEIVPPTE 388 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C V N + +C AQ + RL H+ SR A +I+ +G ++ Sbjct: 389 CPSCGQPVTEQGNSRE-------LFCTNASCPAQTVRRLIHWASRAAADIDAIGGVWIER 441 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + A + P+D +TL + ++ G+VS T + +SI++ R++ L R Sbjct: 442 LAE----AGILENPSDFYTLTKE------RLLEFDRIGEVSATRMIESIDRSRDVGLRRA 491 Query: 554 IFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 + L I A LA+ + S + A L+ V +G +A ++ Sbjct: 492 LIGLAIPMASEGTAARLARAGFASLEEVADAGE----------ERLVAVEDIGPKVAASL 541 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTL------QKI 661 VE R +E L + R E + + K +V TG + +K+ Sbjct: 542 VEHLT--RLRPELERLRERGVSLDVREEDLPPVVAAGAPLAGKTVVVTGAISDPRSGEKV 599 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQ-FLFLLQ 719 R Q + GA ++ +S TD++I G G SKL KA++LGV+I+++ + L++ Sbjct: 600 ARPTFQRLCEKAGATAASSVSANTDLLITGAGVGESKLAKAEKLGVEIVDQATIWAQLIE 659 >gi|255521025|ref|ZP_05388262.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J1-175] Length = 550 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 206/583 (35%), Positives = 310/583 (53%), Gaps = 46/583 (7%) Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205 GK+ A RGDG GED++A +R I +IP L + IEVRGE ++ K F LN+ Sbjct: 4 GKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSFQKLNEIR 61 Query: 206 IAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264 G+ +ANPRNAA+G LR+L+ +R L+ F++ + E+ + L + L Sbjct: 62 EEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSAGLDMLETL 121 Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 G VN R N+ + +Y E R+ L YDIDG+V K++ Q+Q+G +SPRW Sbjct: 122 GLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMGNTVKSPRW 181 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384 I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNED Sbjct: 182 SIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNED------- 234 Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444 + +DIR+GD VL+K+AG++IP+V+ I +R +PF P CP C S +VR Sbjct: 235 ----LITEKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSEEPFHMPKNCPACDSELVRL 290 Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504 A RC C AQ E L HFVSR+A NI+GLG++ + F I Sbjct: 291 EEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFSQ----HLI 339 Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564 + AD+F L + K+ + G+ SVTNL SI + SLE+ +F LGIRHVGA Sbjct: 340 KDVADLFFLSKE------KLLELERMGEKSVTNLLASIQASKQNSLEKLLFGLGIRHVGA 393 Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 + A+SLA ++ + N D +L + +G+ +A +IV ++ N Sbjct: 394 KAAKSLAIHFDTMDNL----------KVADKETLTSINDIGEKMADSIVTYFANEEVHDL 443 Query: 625 VEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 +E L + K K +V TG L+K+ R+ A+ + LG VS Sbjct: 444 LEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIESLGGNVSG 503 Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 504 SVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 546 >gi|297571016|ref|YP_003696790.1| DNA ligase, NAD-dependent [Arcanobacterium haemolyticum DSM 20595] gi|296931363|gb|ADH92171.1| DNA ligase, NAD-dependent [Arcanobacterium haemolyticum DSM 20595] Length = 843 Score = 364 bits (933), Expect = 4e-98, Method: Composition-based stats. Identities = 206/856 (24%), Positives = 349/856 (40%), Gaps = 174/856 (20%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + + A+ L ++ + YY +++D+ YDAL R A+ FP L P+ Sbjct: 8 NFDDAQVRWQELAPQLLDAQETYYSTGDQVMVDATYDALMRELRALEEEFPQL---WSPD 64 Query: 73 GPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P K+G + L VTH SL+ +++ ++L ++ T + + + + FT E Sbjct: 65 SPSTKVGAKPVRGGLPSVTHISRMYSLQDVFSRDELAEWFTGVSKELP----DGVSFTTE 120 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190 KIDG + + Y G AA RGDG +GEDV+ +R I +IP L + PE++E+RGE Sbjct: 121 VKIDGLALNLTYRNGWLERAATRGDGVTGEDVTRNVRMIASIPDQLRGDRIPELVEIRGE 180 Query: 191 VYISKNDFLALN------------------------------------------------ 202 V+ F N Sbjct: 181 VFFPVAAFTQYNASVDARNAQIDARNERISAANREIAAQNRAIRAANASLPSDQQVAEIP 240 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG------KTSEIFAKGQY 255 + KP+ NPRNAASG +R+ + + R L+F HGLG Q Sbjct: 241 SKRREAHVKPFVNPRNAASGTMRQEDTGSVALRSLDFLAHGLGALDGADDVLRASLSSQE 300 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + G PV+N ++ I + + ++ R++LP++ DG+ K+D+ + Q++L Sbjct: 301 GVYSMFIEWGLPVSNVTETHSSLAEINDFLDRFQNARTSLPFEFDGVAIKIDDRATQERL 360 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G R PRW +++KF + TRLLDI +Q+GRTG +TP A +EPV + G+ ++ ATLHN Sbjct: 361 GYTTRVPRWAVAYKFPPTEVQTRLLDIRVQVGRTGRVTPYAVMEPVFVDGSTVSQATLHN 420 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 + + +R+GD V++++AG++IP+VV I +ER F P+ CP Sbjct: 421 PTEVAR-----------KGVRIGDVVVIRKAGDIIPEVVGPIESERDGSEVEFVMPTHCP 469 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + + + RCT +C AQ +R+ H SR A ++E LG + + Sbjct: 470 DCGAPIAAI-----SEGDIDLRCTNQKSCPAQLTQRVVHIGSRGALDVEALGDESAVWLC 524 Query: 496 K-SEDPAFSIRIPADIFTLQRRQQTSTTKIENI--LGFGDVSVTNLYDSINKRRNISLER 552 ++ A ++ A L T ++ + + + + +I +I Sbjct: 525 NPDKNRADALTAFATGSALIVEDNAGKTHKLHLSEQARIERGIVDKHGAILDHHHIVAPE 584 Query: 553 FIFSLGIRHVGAEIARSLAKYY-----------------------LSYQNFAQEINNIIA 589 LGI I + A+ + +++ Sbjct: 585 LQRELGIPQPQHPILSTEAELFHLTADQARDVWIWQAEKKAGEPTGNWKYVRAAWTKPTW 644 Query: 590 HNNDDWLS--------------LIRVPL-----------------VGDIIAQAIVEFYQN 618 D L + VG + +QA+ + + + Sbjct: 645 KGTGDAREISKETHPSKTLLKILDELEGAKHKDLWRKLVALNIRHVGPVASQALADTFGS 704 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEI-----------------ENKKL--------- 652 EA L+++S G SS + Sbjct: 705 LD--AMREASLEDISAVEGVGPIIASSFLAWFGEEWHRQIVERWQDAGVTFKKEESDADV 762 Query: 653 ---------VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 V TG+LQ R +E + G + +S+KT++++VG+N GSK KA++ Sbjct: 763 PQTLAGLTIVATGSLQHFTRDGIKETIAAHGGKATGSVSKKTNLVVVGENAGSKATKAEE 822 Query: 704 LGVKIMNEEQFLFLLQ 719 LG++I+NE QF LL+ Sbjct: 823 LGIRILNEAQFQQLLE 838 >gi|224534829|ref|ZP_03675401.1| DNA ligase, NAD-dependent [Borrelia spielmanii A14S] gi|224514077|gb|EEF84399.1| DNA ligase, NAD-dependent [Borrelia spielmanii A14S] Length = 660 Score = 364 bits (933), Expect = 4e-98, Method: Composition-based stats. Identities = 200/711 (28%), Positives = 344/711 (48%), Gaps = 59/711 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + ++E+++L++ I D YY S P + D YD R + +P+ + P Sbjct: 3 SKIQQEIANLKKLIRKWDKEYYVDSLPSVEDFVYDEHILRLQELESKYPEYKTL---DSP 59 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 K G ++ + +V HSIP LSL+K++++ L+ +I +I +NS ++EPKI Sbjct: 60 TLKFGSDLLNTFKEVEHSIPILSLDKVYDLNLLKSWIDKI------DFNNSFNISVEPKI 113 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I + Y+ G A RG+G G DV+ IR I IP L + + +RGEVYI+ Sbjct: 114 DGCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHIPFFLDEKV--DLVLRGEVYIT 171 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 K +F +N + KPY N RN ASGILRR++ ++ + + + K Sbjct: 172 KENFFKINKFL----EKPYTNSRNLASGILRRVDSKEVANFPLNVFIYDFLNAGLEFKTN 227 Query: 255 YEMLQKMRCLGFPVNNGVRQANT---FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +K++ LGF VN +R + +++Y ++ R++ Y+IDG+V KV +F+L Sbjct: 228 NLATEKLKKLGFQVNPLIRFFDQKSSIKEVLNYIADITKKRNSFEYEIDGVVLKVSDFAL 287 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +++LG P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA ITNA Sbjct: 288 RERLGYTLHHPKWAMAYKFESLSGLSRVNSIIVQVGRSGKITPVANIDKVFVSGAFITNA 347 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+DYI + ++ VGD V V R G+VIP V +I F Sbjct: 348 TLHNQDYIMSI-----------NLNVGDIVKVSRRGDVIPAVEMVINKFSTG---FFKIL 393 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C+ +V++ AH C + +ER+K+F S++ +IEG + + Sbjct: 394 DNCPACKMALVKEG---------AHFFCTNNNCPSVVVERIKYFCSKNCMDIEGFSDKTI 444 Query: 492 DFFFKSEDPAFSIR-IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 F F+ + + I D + L + + GF + V NL +SI + Sbjct: 445 SFLFEKKFISSEIDLYIFDFYKLLKFK-----------GFKERKVNNLINSIEASKKKPF 493 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + + S+GI+ +G R L +L+ N ++ + + + +L+++ +G+ IA Sbjct: 494 SKLLLSIGIKELGENTIRLL---FLNNFNSFSKLFKLCQDRDFAFSTLLKIKGIGEKIAL 550 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 I+ + + I + + + + + + KK TG+ R + Sbjct: 551 NIIGAFNDSIMINKF-KFFENLGFKMEECVLIDDKNKLLLGKKFCITGSFGDYSRSIVID 609 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + GA+ ++R D +IVG G+KL+KA L +KIM+ E L Sbjct: 610 KLENKGAIFQTCVTRSLDFLIVGKKAGTKLKKALNLNIKIMSFEDIKSYLD 660 >gi|325856672|ref|ZP_08172310.1| NAD-dependent DNA ligase OB-fold domain [Prevotella denticola CRIS 18C-A] gi|325483386|gb|EGC86361.1| NAD-dependent DNA ligase OB-fold domain [Prevotella denticola CRIS 18C-A] Length = 684 Score = 363 bits (931), Expect = 8e-98, Method: Composition-based stats. Identities = 170/730 (23%), Positives = 290/730 (39%), Gaps = 76/730 (10%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 KE+ SL ++++ D YY + ++ D E+DA R + P+ P + Sbjct: 3 KEIQSLVKQLNAASDAYYNGREELMTDYEWDAAFDRLKKLEEQ----TGIVLPDSPTQNV 58 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 + K H P LSL K +EDL ++ L K+DG Sbjct: 59 SADNVAG-KKEKHEFPALSLAKTKKVEDLARWAE------------GKPIWLSWKLDGLT 105 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + Y+ G+ RGDGH G +++ RAI ++ + +RGE IS DF Sbjct: 106 LVATYDNGRLTKVVTRGDGHIGTNITHLSRAIEGFL--QTIPYRGHLVIRGEAVISYPDF 163 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEM 257 N + YANPRN ASG L + + R+L++ L T E M Sbjct: 164 EKFN----MESEEAYANPRNLASGSLTLKDINEVKQRHLHWIPFTLVYTEEEIGSWGERM 219 Query: 258 LQKMRCLGFPVNNGVR--------------QANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 R PV+ + ++ G ++ PY +DGLV Sbjct: 220 AWLERQGFHPVDRELISRPTAENIQAVIDSWSSRVTGQALNTRYPEADTQRFPYPVDGLV 279 Query: 304 YKVDEFSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 D+ + R + K+ +++A T L I+ + ++PVA +PV Sbjct: 280 ITYDDTAYAATGSVTGHHATRAGYAFKWQDERAETELDYIEWSCAAST-ISPVAVFQPVE 338 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G + A+L N + L GK G ++ V +A ++IPKVV + Sbjct: 339 LEGTTVKRASLCNISECERLGIGGK----------GTKIAVIKANKIIPKVVSV-----V 383 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 F P CP+C+S + +G C A+QL++ FVS++ N Sbjct: 384 ERMGIFHVPETCPVCRSATEVVESEASGTRTLH---CTNDHCPAKQLKKFGRFVSKEGVN 440 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+GL +Q + F I AD F L ++ + GFGD SV+ L ++ Sbjct: 441 IDGLSEQTVQKFIN----LGWICEYADFFHLNEH----ALQLRTMDGFGDRSVSKLLAAV 492 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 K R++ R +F+L I VG ++ L Y + + +P Sbjct: 493 EKARSVEARRLLFALNIPLVGQDVCNRLLSAYPLKELIRTATESTDDDV------FSTIP 546 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +G + V++ ++ N ++ LL E++ S + V TG + + Sbjct: 547 GIGPEKSANFVQWMKDADNQPVLQHLLAELNVRQASSAPTGSG-CQGLTFVITGDVHHYK 605 Query: 663 -RHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R++ + Y+ G V+ +S+ TD +I ++ K +KA+ L + I++EE F+ Sbjct: 606 NRNELKAYIESQGGKVTGSVSKSTDFLINNDVESTSGKNQKAKALSIPIISEEDFIDRFA 665 Query: 720 QYNTTLRIHD 729 Q + + Sbjct: 666 QGSASGLPAQ 675 >gi|325002847|ref|ZP_08123959.1| NAD-dependent DNA ligase LigA [Pseudonocardia sp. P1] Length = 615 Score = 362 bits (930), Expect = 9e-98, Method: Composition-based stats. Identities = 182/600 (30%), Positives = 296/600 (49%), Gaps = 33/600 (5%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + + + EQAR+ + L E++ H YY P++ D ++D L + A P LA Sbjct: 1 MSSQTDEQARERHAQLAAEVADHQFRYYVLDAPVVSDGQFDELWHELLGLEDAHPGLA-- 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P P K+GG + H LSL+ ++ +DLR + R+ R + ++ + Sbjct: 59 -TPQSPTQKVGGTFSTEFTAHDHLERMLSLDNAFSADDLRTWQERVTREVGE----NLHY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEI 184 E KIDG + + YE G A RGDG +GED++ +R + +P L+ P + Sbjct: 114 LCELKIDGLAVNLLYEGGTLTRALTRGDGRTGEDITLNMRTLGEVPVTLTGTDEFPVPAL 173 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +EVRGEVY DF LN ++ G++P+ANPRN A+G LR+ +P +R L HG+ Sbjct: 174 VEVRGEVYFRLEDFDRLNASLVEAGKEPFANPRNTAAGSLRQKDPRVTASRNLRLICHGI 233 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G+ Q + + G P++ R +V + R + ++IDG+V Sbjct: 234 GRRDGFTPVTQSQAYDALVAWGLPISPRTRVLRGIEKVVEFVEHWGEHRHDVEHEIDGVV 293 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KVDE +LQ++LG +R PRW I++K+ +QA+TRLLDI + +GRTG +TP A +EPV + Sbjct: 294 VKVDEVALQRRLGATSRFPRWAIAYKYPPEQATTRLLDIRVNVGRTGRVTPFAVMEPVKV 353 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G+ + ATLHN D ++ + + +GDRV++++AG+VIP+V+ + + R Sbjct: 354 AGSTVEMATLHNADEVRR-----------KGVLIGDRVVIRKAGDVIPEVLGPVTDVRDG 402 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + F P+ CP C + +V+ RC +C AQ ERL H R +F+I Sbjct: 403 SERAFVMPTHCPECGTALVQQ-----KAGDVDRRCPNARSCPAQLRERLFHVAGRGSFDI 457 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGLG + + + D+F+L + T N G V+ L ++ Sbjct: 458 EGLGYEAAVALL----TSGVLTDEGDVFSLTEDELLRTDLFRNQKGELTVNGRKLLTNLE 513 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 ++ L R + L IRHVG A++LA+ + S + Q + ++ Sbjct: 514 AAKDRPLWRVLVGLSIRHVGPTAAQALAREFGSMEALEQAAARAKEDTEAAGVEIVS-DG 572 >gi|327313400|ref|YP_004328837.1| NAD-dependent DNA ligase domain-containing protein [Prevotella denticola F0289] gi|326944680|gb|AEA20565.1| NAD-dependent DNA ligase domain protein [Prevotella denticola F0289] Length = 684 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 172/730 (23%), Positives = 289/730 (39%), Gaps = 76/730 (10%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 KE+ SL ++++ D YY + ++ D E+DA R + P+ P + Sbjct: 3 KEIQSLVKQLNAASDAYYNGREELMTDYEWDAAFDRLKKLEEQ----TGIVLPDSPTQNV 58 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 + K H P LSL K +EDL ++ L K+DG Sbjct: 59 SADNVAG-KKEKHEFPALSLAKTKKVEDLARWAE------------GKPIWLSWKLDGLT 105 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + Y+ G+ RGDGH G +++ RAI I + + + +RGE IS DF Sbjct: 106 LVATYDNGRLTKVVTRGDGHIGTNITHLSRAIEGILQTV--PYRGHLVIRGEAVISYPDF 163 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEM 257 N + YANPRN ASG L + + R+L++ L T E M Sbjct: 164 EKFN----MESEEEYANPRNLASGSLTLKDINEVKQRHLHWIPFTLVYTEEEIDSWGERM 219 Query: 258 LQKMRCL--------------GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 R G ++ G ++ PY +DGLV Sbjct: 220 AWLERQGFHPVDRELISRPTAGNIQAVIDSWSSRVTGQALNTRHPEADTQRFPYPVDGLV 279 Query: 304 YKVDEFSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 D+ + R + K+ +++A T L I+ + ++PVA +PV Sbjct: 280 ITYDDTAYAATGSVTGHHATRAGYAFKWQDERAETELDYIEWSCAAST-ISPVAVFQPVE 338 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G + A+L N + L GK G ++ V +A ++IPKVV + Sbjct: 339 LEGTTVKRASLCNISECERLGIGGK----------GTKIAVIKANKIIPKVVSV-----V 383 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 F P CP+C+S + +G C A+QL++ FVS++ N Sbjct: 384 ERMGIFHVPETCPVCRSATEVVESEASGTRTLH---CTNTHCPAKQLKKFGRFVSKEGVN 440 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+GL +Q + F I AD F L ++ + GFGD SV+ L ++ Sbjct: 441 IDGLSEQTVQKFIN----LGWICEYADFFHLNEH----ALQLRTMDGFGDRSVSKLLAAV 492 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 K R++ R +F+L I VG ++ L Y + + +P Sbjct: 493 EKARSVEARRLLFALNIPLVGQDVCNRLLSAYPLKELIRTATESTDDDV------FSTIP 546 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +G + + V + ++ N ++ LL E++ SS + V TG + + Sbjct: 547 GIGPEKSASFVRWMKDADNQPVLQHLLAELNVRQASSAPTGSS-CQGLTFVITGDVHHYK 605 Query: 663 -RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R++ + Y+ G V+ +S+ TD +I D + K +KA+ L + I++EE F+ Sbjct: 606 NRNELKAYIESQGGKVTGSVSKSTDFLINNDVKSTSGKNQKAKALSIPIISEEDFIDHFA 665 Query: 720 QYNTTLRIHD 729 Q + + Sbjct: 666 QGSASGLPAQ 675 >gi|203284458|ref|YP_002222198.1| DNA ligase [Borrelia duttonii Ly] gi|254781262|sp|B5RMA6|DNLJ_BORDL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|201083901|gb|ACH93492.1| DNA ligase [Borrelia duttonii Ly] Length = 669 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 192/702 (27%), Positives = 335/702 (47%), Gaps = 53/702 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + + E+ SL I D YY S P + D YD R + + +P+ + P Sbjct: 3 KDIKDEILSLRDAIKKWDREYYVDSSPTVGDVTYDKALLRLQYLENRYPEYKTL---DSP 59 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 K G ++ +V HS P LSL+K +++++L ++ ++ + + EPKI Sbjct: 60 TLKFGSDLLNDFKEVEHSYPILSLDKAYDVKELLLWVEKMS-LEGSNLGFDMGISAEPKI 118 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I + Y+ G A RGDG G +V +R I +P + + + +RGE+YI+ Sbjct: 119 DGCSIVLYYKDGILEKALTRGDGRFGNNVIENVRTIKNVPLCIGERVE--LVLRGEIYIT 176 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 K DFL +N + Y N RN SGILRR+N ++ + S + Sbjct: 177 KKDFLKINHTL----DDSYINARNLTSGILRRINSREVVNFPLDIFVYDILYSSLELNTN 232 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 ++ K++ GF +N + + I++Y E++ R Y+IDG+V KVD+F L Sbjct: 233 HDAFDKLKHFGFKLNPFCKFFCGKNLGENIINYVKEIEEQRERFEYEIDGVVLKVDDFRL 292 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 + LG + P+W I++KF +A ++++DI +Q+GR+G +TPVA +E V I GA IT+A Sbjct: 293 RDVLGYTSHHPKWSIAYKFESLRAVSKVIDIVVQVGRSGKITPVANIEKVLIAGAFITSA 352 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHN+DYI + + V D V + R G+VIP V ++ + F P Sbjct: 353 SLHNQDYIDSI-----------GLNVKDVVAISRRGDVIPAVELVVEKLSVGN---FKIP 398 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 ++CP C+ ++++ AH + C + + +K+F S+ NI GL ++ + Sbjct: 399 NYCPSCKKSLIKEG---------AHLFCVNIHCPLKIMGHIKYFCSKKCMNIVGLSEKTI 449 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 +F F I D++T + + GF V L SI + +N + Sbjct: 450 EFLFNMN----FISSEIDLYTFDFDRLIG------LKGFNFKRVNKLKRSIEESKNRPFK 499 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + ++GI+ +G + N I+ + N + + L+ + +G+ IA Sbjct: 500 KLLLAMGIKDLGINTILL---LINNNLNSFDAISLLCQDNKNALVKLLDIKGIGERIAFN 556 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQE 668 I+ + + + K + + N SS + KK TG+ + RH + Sbjct: 557 IIRAFNDKIILDKF-NFFKGLGFKMQEDSINCVVDSSFLFGKKFCITGSFDEYPRHVLID 615 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +T+ GA+ ++ +SR D ++VG +PG KL+KA LG+KI++ Sbjct: 616 KITKKGAIFNSSVSRYLDFLLVGKSPGLKLKKANNLGIKILS 657 >gi|325269002|ref|ZP_08135623.1| NAD-dependent DNA ligase LigA [Prevotella multiformis DSM 16608] gi|324988623|gb|EGC20585.1| NAD-dependent DNA ligase LigA [Prevotella multiformis DSM 16608] Length = 684 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 169/730 (23%), Positives = 283/730 (38%), Gaps = 76/730 (10%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 KE+ L ++ D YY + ++ D E+DA R + P+ P + Sbjct: 3 KEIQRLVDRLNAASDAYYNGREELMTDYEWDAAFDRLKKLEEQ----TGIVLPDSPTQNV 58 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 + K H P LSL K +EDL ++ L K+DG Sbjct: 59 SADNVAG-KKEKHEFPALSLAKTKKVEDLARWAE------------GKPVWLSWKLDGLT 105 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + Y+ G+ RGDGH G +++ RAI I + + + +RGE IS DF Sbjct: 106 LVATYDNGRLTKVVTRGDGHIGTNITYLSRAIEGILQTV--PYRGHLVIRGEAVISYPDF 163 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEM 257 N + YANPRN ASG L + + R+L++ L T M Sbjct: 164 EKFN----MESEEAYANPRNLASGSLTLKDINEVRQRHLHWIPFTLVYTEGEIGSWGERM 219 Query: 258 LQKMRCL--------------GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 R G ++ G + PY +DGLV Sbjct: 220 AWLERQGFHPVDRELISRPTAGNIQAVIDSWSSRVTGQALNTRHPAADPQCFPYPVDGLV 279 Query: 304 YKVDEFSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 D+ + R + K+ +++A T L I+ + ++PVA +PV Sbjct: 280 ITYDDTAYAATGSVTGHHATRAGYAFKWQDERAETELDHIEWSCAAST-ISPVAVFQPVE 338 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G + A+L N + L GK G ++ V +A ++IPKVV + Sbjct: 339 LEGTTVKRASLCNISECERLGIGGK----------GTKIAVIKANKIIPKVVSV-----V 383 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 F P CP+C+S + +G C A+QL + FVS++ N Sbjct: 384 ERTGIFHVPETCPVCRSATEVVESEASGTRTLH---CTNAHCPAKQLRKFGRFVSKEGVN 440 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+GL +Q + F I AD F L ++ + GFGD SV+ L ++ Sbjct: 441 IDGLSEQTVQKFIN----LGWICEYADFFHLNEH----ALQLRAMDGFGDRSVSKLLAAV 492 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 K R++ R +F+L I VG ++ L Y + + +P Sbjct: 493 EKARSVEARRLLFALNIPLVGQDVCNRLLSAYPLKELIRTATESTDDDV------FSTIP 546 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +G + + V + ++ N ++ LL E++ SS + V TG + + Sbjct: 547 GIGPEKSASFVRWMKDEDNQPVLQHLLAELNVRQASFAPTGSS-CQGLTFVITGDVHHYK 605 Query: 663 -RHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R++ + Y+ G V+ +S+ TD +I ++ K +KA+ L + I++EE F+ Sbjct: 606 NRNELKAYIESQGGKVTGSVSKSTDFLINNDVESTSGKNQKAKALSIPIISEEDFIDRFA 665 Query: 720 QYNTTLRIHD 729 Q + + Sbjct: 666 QGSASGLPAQ 675 >gi|315924259|ref|ZP_07920483.1| NAD-dependent DNA ligase LigA [Pseudoramibacter alactolyticus ATCC 23263] gi|315622420|gb|EFV02377.1| NAD-dependent DNA ligase LigA [Pseudoramibacter alactolyticus ATCC 23263] Length = 654 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 162/713 (22%), Positives = 289/713 (40%), Gaps = 70/713 (9%) Query: 12 LSIEQ--ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 +++ + ++++ L +I+ + YY + ++ + E+DAL + A Sbjct: 1 MTMAELSINQQMADLIGKINAASEAYYGGREELMSNYEWDALFDALIRLEKK----AGYA 56 Query: 70 DPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ P ++G + + KV H P LSL K + DL K+ Sbjct: 57 LPDSPTQRVGTSSSEASGEKVAHEYPMLSLAKTKTVADLVKWAD------------GRDV 104 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 L K+DG + Y++G+ RG+G G D++ AI +P +S P + +R Sbjct: 105 WLSLKLDGLTLVATYDEGRLNRLVTRGNGSVGTDITHLASAIDGVPIQISE--PGHLVIR 162 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247 GE I+ DF + YANPRN ASG L + + R+L + L Sbjct: 163 GEALITYKDFETFL----LESEETYANPRNLASGSLSLKDIDEVRRRHLQWIPFTLVHLD 218 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + + LGF R G + + +PY +DGLV D Sbjct: 219 REMISWG-ARMDYLASLGFHPVERERLQADTLGDGIARWSEQISKGAIPYPVDGLVMTYD 277 Query: 308 EFSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + R ++ K+ + A + L I+ + +TPVA EPV + G Sbjct: 278 DTDYAQTGSVTGHHATRAGLAFKWQDTSADSILTGIEWSCAAST-ITPVAIFEPVALEGT 336 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ A+LHN + L G G +V V +A ++IPKV+ Sbjct: 337 IVKRASLHNISECRRLGIGGA----------GTKVTVIKANKIIPKVIAA------KGEG 380 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F P CP+C + ++ + + C+ + + + SR +I+GL Sbjct: 381 NFVIPEACPVCSAPTAVAVSSSGAETL---HCSNPECAAKHLQKFNRFV-SRYGMDIDGL 436 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 Q ++ F I+ +DI+ L + I + GFG+ SV NL +I K R Sbjct: 437 SIQTMNKFINQ----GFIKSFSDIYQLAKY----FDAIREMDGFGEKSVANLAAAIEKSR 488 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + E +F+L I +G + + L + + + + +G Sbjct: 489 RVKPENLLFALCIPMIGVDAGKRLINAIG---------LEGVLNRLNANEDFDDIEGIGP 539 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHK 665 + +++ +Y + +N + LL E+ + ++N S E V TG +Q R Sbjct: 540 EKSDSLLAWYADEKNASDLTRLLAELQVDMEAKQRN-SGRCEGLTFVITGKVQHYQNRDA 598 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLF 716 + YV G VS +S+KTD ++ ++ +K +A+ LGV I++E +F+ Sbjct: 599 FKAYVESQGGHVSGSVSKKTDYLVNNDVESTSAKNRRARDLGVPIISEAEFVE 651 >gi|281424041|ref|ZP_06254954.1| putative DNA ligase [Prevotella oris F0302] gi|281401824|gb|EFB32655.1| putative DNA ligase [Prevotella oris F0302] Length = 665 Score = 361 bits (925), Expect = 3e-97, Method: Composition-based stats. Identities = 168/714 (23%), Positives = 294/714 (41%), Gaps = 61/714 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ ++ RK + L ++ D YY ++ D E+DA+ + + + P Sbjct: 1 MAEDKLRK-MRELVDLLNRAADAYYNGQGELMTDYEWDAMFDQVKQLETE----TGQKFP 55 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P N++ + K H P LSL K +L K+ L Sbjct: 56 DSPTNRVSEDNITG-QKEEHEFPALSLAKTKQPTELAKWAE------------GRPIWLS 102 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG + + ++ GK RG+GH G +++ AI IP+ + + VRGE Sbjct: 103 WKLDGLTLVVTFDNGKLTKVVTRGNGHIGTNITHLANAIQGIPQE--IKSKGHVVVRGEC 160 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 IS DF N + YANPRN ASG L + + R+LN+ L E Sbjct: 161 VISYADFEQFN----IESDEEYANPRNLASGSLTLKDVNEVRQRHLNWIPFTLVYAEEPI 216 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQ---ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + + G + V K PY +DGLV D Sbjct: 217 NSWG-ARMDWLEQNGMKAVEREKIEVPTLQNIEQVIAKWTEKVTGKVNPYPVDGLVITYD 275 Query: 308 EFSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + S + R + K+ ++ A T L I+ ++PVA PV + G Sbjct: 276 DTSFAQTGSVTGHHATRAGYAFKWQDESADTVLDHIEWSCAA-NTISPVAVFTPVELEGT 334 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + A+L N + L G+ G ++ V +A ++IPKV+ + + Sbjct: 335 TVKRASLCNISECERLGIGGQ----------GTKLSVIKANKIIPKVIRV-----NEKIG 379 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C S+ ++ T CT G + Q + FVS++ NI+G+ Sbjct: 380 DLKIPETCPVCGSKTQITMS--TASETKTLHCTNGKCPAKQL-RKFARFVSKEGVNIDGM 436 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 +Q + F ++ AD++ L+ ++ + GFG+ SV NL +I K R Sbjct: 437 SEQTVAKFIN----LGWVKEYADLYQLKNH----ALELSFMEGFGEKSVRNLLHAIEKAR 488 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 ++ F+++L I G ++ + L Y ++ + +G Sbjct: 489 DVEAHHFLYALSIPLCGQDVCKRLLSAYPLHEIIDIASGKSDKTVPGVEAPFSLIAGIGP 548 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHK 665 + IV+++ + N VE LL++V S +E + + + V TG + + R++ Sbjct: 549 EKSNQIVKWFHDEENRMMVEKLLRQVHISQENNEASGEN-CKGLTFVVTGDVNHYKNRNE 607 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFL 717 + Y+ G V+ +S+ T+ +I D + SK +KAQQLG+ I++EE+F+ L Sbjct: 608 LKAYIESQGGKVTGSVSKSTNYLINNDVTSASSKNQKAQQLGIPIISEEEFINL 661 >gi|213618983|ref|ZP_03372809.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 544 Score = 361 bits (925), Expect = 4e-97, Method: Composition-based stats. Identities = 199/577 (34%), Positives = 314/577 (54%), Gaps = 42/577 (7%) Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++G + ++ H +P LSL+ +++ E F R+ K ++ + Sbjct: 2 TPDSPTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSTENVIWC 59 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVR 188 E K+DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVR Sbjct: 60 CELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVR 119 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-T 246 GEV++ + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 120 GEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILE 179 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV Sbjct: 180 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 239 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 240 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 299 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + Sbjct: 300 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 348 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 349 PIVFPTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 402 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L K+ + G S N+ +++ K + Sbjct: 403 GDKIIDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAK 452 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + L +VP VG Sbjct: 453 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGI 502 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 ++A + F+ N + LL E N Sbjct: 503 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINA 539 >gi|284031885|ref|YP_003381816.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836] gi|283811178|gb|ADB33017.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836] Length = 671 Score = 361 bits (925), Expect = 4e-97, Method: Composition-based stats. Identities = 200/710 (28%), Positives = 322/710 (45%), Gaps = 77/710 (10%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + +L +I D YY+ P + D+EYDA++ A+ A P+LA DPN PL+++ Sbjct: 12 ERIETLADQIVQLRDAYYR-GAPAVADAEYDAIEDELRALIAAHPELA--PDPN-PLDQV 67 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G L V HS P LSLEK E + F R + PK+DG Sbjct: 68 GAPAVLH-APVRHSRPMLSLEKATRPEQVEAFFNR---------FPGRSVVVMPKLDGLS 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + + YE G+ A RGDG +G+DV+ +RA+ P +EVRGE + ++ F Sbjct: 118 LALVYEDGQLARAITRGDGTTGDDVTPLVRALADGVPAKIDA-PGRVEVRGEAVMLRSTF 176 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEM 257 A N KP NPRNAA+G LR +P R L F L ++ Sbjct: 177 AAYNAA---HPDKPLINPRNAAAGTLRAKDPATVAERRLQFLAFDL---HTDPDSTDSDL 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 + +R LGF +R + + ++ R+ L YD+DG V ++ + G Sbjct: 231 DRALRTLGF-AVADMRHCDDAAAAQAVITTIEQQRNDLDYDLDGAVLRLADRDAFAAAGT 289 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 R+ SPR +++KFA ++ +T L D+ +G+TG + PVA LEPV +GG +T ATL N++ Sbjct: 290 RSSSPRGALAYKFAAEEKTTVLADVVWDVGKTGKIAPVAWLEPVFVGGTTVTRATLANQE 349 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI-IVNERHPDAQPFSFPSFCPI 436 I+ R I++GD VLV+RAG+VIP V + + R Q P+ CP Sbjct: 350 VIR-----------ARGIKIGDTVLVRRAGDVIPFVAGVLDASRRTGAEQDIVPPTNCPS 398 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + N + ++C AQ + RL H+ SR A +I+ +G ++ + Sbjct: 399 CGQPLTEQGNSRE-------LFCTNVSCPAQTVRRLIHWASRAAADIDAIGGVWIERLAE 451 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 A + P+D + L + K+ G+VS + +SI+ R + L R + Sbjct: 452 ----AGILEHPSDFYHLTKE------KLLEFDRIGEVSAARMIESIDASRQVGLRRALIG 501 Query: 557 LGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 L + A L + + S + A L+ V +G +A ++VE Sbjct: 502 LAVPMASEGTAARLCRAGFGSLEEVADAGE----------EGLVAVEDIGPKVAASLVEH 551 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTL------QKIQRH 664 R +E L E + + K +V TG + +K+ R Sbjct: 552 LS--RLRPELERLRAAGVSLDVLEEDLPPVVAAGAPLAGKTVVVTGAISDPRSGEKVARP 609 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQ 713 Q GA +++ +S TD +I G + G +KL KA++LGV+++++ + Sbjct: 610 AFQRLCESAGATIASSVSASTDYLITGADVGAAKLTKAEKLGVEVVDQSE 659 >gi|282864620|ref|ZP_06273675.1| DNA ligase, NAD-dependent [Streptomyces sp. ACTE] gi|282560559|gb|EFB66106.1| DNA ligase, NAD-dependent [Streptomyces sp. ACTE] Length = 709 Score = 360 bits (924), Expect = 4e-97, Method: Composition-based stats. Identities = 193/718 (26%), Positives = 316/718 (44%), Gaps = 91/718 (12%) Query: 39 SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98 + ++ D YD L R A P + P K+ G + V H++P LSL Sbjct: 40 GESLLDDDAYDRLARGIAAYEAEHPQEVLAA---SPTGKVAGGAAVG--DVPHTVPMLSL 94 Query: 99 EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158 + +++ E + + R + +++EPK+DG + RY++G+ RGDG Sbjct: 95 DNVFSAEQFVTWTASVERRIGRPV---AAWSVEPKLDGLAVAARYQQGRLDRLITRGDGT 151 Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218 +GEDVS I + +P L+ P +EVRGE+ ++ F A N A G P+ANPRN Sbjct: 152 AGEDVSHAIGTVLGLPERLNE--PATLEVRGEILMTDEQFDAANAARTAHGAAPFANPRN 209 Query: 219 AASGILRRLNPTDITRYLNFFVHGLGKT------SEIFAKGQYEMLQKMRCLGFPVNNGV 272 A+G LR + F L + E+L+ + LG Sbjct: 210 GAAGTLRAKDRPYRVEMTFFAYAALPLPGSGTSAETLTGLPHSEVLRHVAGLGVRTAADT 269 Query: 273 ----RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 R A T + + ++ R+TLP+ IDG+V K D + Q+ G R+PRW I++ Sbjct: 270 AVAPRTAGTVEEVQAGVEDIAGQRATLPFGIDGIVIKADLAADQRDAGTGTRAPRWAIAY 329 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388 K + TRLL ++ +GRTGI+ P A LEPV I G+ + ATLHN I Sbjct: 330 KLPAVEKVTRLLGVEWNVGRTGIIAPRAVLEPVEIDGSTVGYATLHNPADITR------- 382 Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448 RD+R+GD+V+V +AG++IP++ + + R + +P FP CP C S + Sbjct: 383 ----RDLRLGDQVMVYKAGDIIPRIEAPVAHLRTGEERPIEFPQSCPQCGSEIDTSEQ-- 436 Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508 RC G C + + + + RD +IEGLG ++ A + A Sbjct: 437 ------RWRCVRGRDC--RLVASVSYAAGRDQLDIEGLGATRVVQLVD----AGLVADFA 484 Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 D+FTL+R Q + G+ S NL ++ R+ L R +LG+R G ++R Sbjct: 485 DLFTLEREQLLG------LERMGETSTDNLLAAVETARSRPLSRVFCALGVRGTGRSMSR 538 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 +A+++ + A D +L RV +G A A+V + + L Sbjct: 539 RIARHFATMDRIAAA----------DTEALQRVDGIGKEKAAAVVA--ELAELAPLIAKL 586 Query: 629 LKEVSPSIGRHEKN------------------------VSSEIENKKLVFTG----TLQK 660 + ++ +V TG L+K Sbjct: 587 VAAGVNMTEPGATPPPDPGTEADEERAGAEGVSEGAGGTGLPLDAMTVVVTGAMTGVLEK 646 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R++ E + + G S+ +S++T +++ G+ GSK KA+ LGV+I ++F L+ Sbjct: 647 LSRNEMNELIERAGGKASSSVSKRTSLLVAGEKAGSKRTKAEGLGVRIATPDEFAELV 704 >gi|299142918|ref|ZP_07036045.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Prevotella oris C735] gi|298575647|gb|EFI47526.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Prevotella oris C735] Length = 657 Score = 360 bits (924), Expect = 4e-97, Method: Composition-based stats. Identities = 166/705 (23%), Positives = 286/705 (40%), Gaps = 60/705 (8%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L ++ D YY ++ D E+DA+ + + + P+ P N++ Sbjct: 1 MRELIDLLNRAADAYYNGQGELMTDYEWDAMFDQVKQLETE----TGQKFPDSPTNRVSE 56 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + K H P LSL K +L K+ L K+DG + Sbjct: 57 DNITG-QKEEHEFPALSLAKTKQPTELAKWAE------------GRPIWLSWKLDGLTLV 103 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + ++ GK RG+GH G +++ AI IP+ + + VRGE IS DF Sbjct: 104 VTFDNGKLTKVVTRGNGHIGTNITHLANAIQGIPQE--IKSKGHVVVRGECVISYADFEQ 161 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259 N + YANPRN ASG L + + R+LN+ L E + Sbjct: 162 FN----IESDEEYANPRNLASGSLTLKDVNEVRQRHLNWIPFTLVYAEEPINSWG-ARMD 216 Query: 260 KMRCLGFPVNNGVRQ---ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + G + V K PY +DGLV D+ + + Sbjct: 217 WLEQNGMKAVEREKIEVPTLQNIEQVIAKWTEKVTGKVNPYPVDGLVITYDDTTFAQTGS 276 Query: 317 ERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 R + K+ ++ A T L I+ ++PVA PV + G + A+L N Sbjct: 277 VTGHHATRAGYAFKWQDESADTVLDHIEWSCAA-NTISPVAVFTPVELEGTTVKRASLCN 335 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 + L G+ G ++ V +A ++IPKV+ + + P CP Sbjct: 336 ISECERLGIGGQ----------GTKLSVIKANKIIPKVIRV-----NEKIGDLKIPEACP 380 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C S+ ++ T CT G + Q + FVS++ NI+G+ +Q + F Sbjct: 381 VCGSKTQITMS--TASETKTLHCTNGKCPAKQL-RKFARFVSKEGVNIDGMSEQTVAKFI 437 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 ++ AD++ L+ ++ + GFG SV NL +I K R++ F++ Sbjct: 438 N----LGWVKEYADLYQLKNH----ALELSFMEGFGKKSVRNLLHAIEKARDVEAHHFLY 489 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +L I G ++ + L Y Y+ + +G + IV++ Sbjct: 490 ALSIPLCGQDVCKRLLSAYPLYEIIDIASGKSDKTVPGVEAPFSLIAGIGPEKSNQIVKW 549 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLG 674 + + N VE LL++V S E + + + V TG + + R++ + Y+ G Sbjct: 550 FHDEENRMMVEKLLRQVHISQENKEASGEN-CKGLTFVVTGDVNHYKNRNELKAYIESQG 608 Query: 675 AVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+ T+ +I D + SK +KAQQLG+ I++EE+F+ L Sbjct: 609 GKVTGSVSKSTNYLINNDVTSASSKNQKAQQLGIPIISEEEFINL 653 >gi|149928191|ref|ZP_01916436.1| DNA ligase (NAD+) [Limnobacter sp. MED105] gi|149823082|gb|EDM82322.1| DNA ligase (NAD+) [Limnobacter sp. MED105] Length = 597 Score = 360 bits (924), Expect = 5e-97, Method: Composition-based stats. Identities = 214/572 (37%), Positives = 323/572 (56%), Gaps = 34/572 (5%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L ++ + YY P + DSEYD + R I + P+L ++ + P ++GG Sbjct: 27 MRRLIDLLNRWEYAYYVLDAPEVPDSEYDKVYRSLQQIENNHPELIQN---DSPTQRVGG 83 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + +V H +P LSL + D+ F R+ D +I + ++PK DG I+ Sbjct: 84 KPADGFEQVRHRVPMLSLGNAFEDSDVLAFDRRVKELADLPIDTTIAYAVDPKFDGLAIS 143 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFL 199 I Y G F A RGDG GEDVSA ++ I ++P L + +P +E+RGE++++K DFL Sbjct: 144 IHYTNGMFDQAITRGDGTVGEDVSANVKTIRSLPLKLKGSVVPAHLEIRGEIFMTKKDFL 203 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHG--LGKTSEIFAKGQYE 256 +N +G K +ANPRNAA+G +R+L+P F+ +G L + K Q Sbjct: 204 QMNQRQAELGLKVFANPRNAAAGTIRQLDPKVAASRPLRFYCYGAALEREQLRELKSQSA 263 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 M++ + LG PV+ + A G++S+Y + RSTLP++IDG+VYKVD F LQ QLG Sbjct: 264 MMKWLAALGLPVSELSQTATGAEGLLSFYRSVGGRRSTLPFEIDGVVYKVDSFDLQDQLG 323 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A++PR+ ++HKF + +RLL+I++Q+GRTG +TPVA+LEPV +GG ++++ATLHN Sbjct: 324 YVAKAPRFAVAHKFPPDEVLSRLLNIEVQVGRTGSITPVAKLEPVKVGGVVVSSATLHNL 383 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ +D+RVGD+VLV+RAG+VIP+V+ N+R P + F P+ CPI Sbjct: 384 DEIQR-----------KDLRVGDQVLVRRAGDVIPEVLPFPGNQRSPVSSAFVMPTHCPI 432 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S V ++ AA RCTGGL C AQ + + HF R A +IEGLG + ++ Sbjct: 433 CNSLVRKEEGE------AAFRCTGGLVCKAQLTQSIIHFAHRRAIDIEGLGSKLVEVLVD 486 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 E ++ PAD+F L+ + + GD S NL DSI+K + + RF+F Sbjct: 487 KE----WVKTPADLFRLE------FDALVQLERMGDKSARNLLDSIDKAKQTTFGRFLFG 536 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 LGIRHVG AR LA Y+ + + + Sbjct: 537 LGIRHVGEATARDLAAYFKNVERLMNASEEEL 568 >gi|285018504|ref|YP_003376215.1| NAD-dependent_DNA_ligase [Xanthomonas albilineans GPE PC73] gi|283473722|emb|CBA16225.1| putative nad-dependent_dna_ligase protein [Xanthomonas albilineans] Length = 838 Score = 359 bits (922), Expect = 8e-97, Method: Composition-based stats. Identities = 228/688 (33%), Positives = 346/688 (50%), Gaps = 104/688 (15%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + L ++ + YY + P I D+EYDAL R +A+ A P LAR + P Sbjct: 8 QQRVVELRSQLEDANHRYYVLADPAIPDAEYDALMRELEALESAHPALAR---EDSPTRS 64 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNI-------------EDLRKFITRIYRFWQKKDDN 124 +G + +V H+IP LSL + ++ F RI R + Sbjct: 65 VGARPDSGFPEVRHAIPMLSLANAFETPSVAEDADDRIRFAEVADFERRIERELELAAPV 124 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NI 181 F++EPK+DG I++RYE G FV A RGDG +GEDV+A +R + ++P L + Sbjct: 125 ---FSVEPKLDGLAISLRYEDGVFVQGATRGDGSTGEDVTANLRQVRSVPLRLRELGMPM 181 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240 P ++EVRGE+Y+ + F A N + K ANPRN A+G LR+L+P R L FF Sbjct: 182 PAVLEVRGEIYMPRAAFAAWNARALERNEKLLANPRNGAAGSLRQLDPAVTRRRPLAFFA 241 Query: 241 HGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + +G+ + + + LQ +R GFPV A F G+++Y+ + + R LPYDI Sbjct: 242 YSVGEVRGLELPETHSQTLQLLRRYGFPVAPEADTATGFDGLIAYFRRIGARRDALPYDI 301 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYK+D++ Q +G AR+PRW ++HKF ++ ST L I++QIGRTG TPVARLE Sbjct: 302 DGVVYKLDDYDQQTAMGFVARAPRWALAHKFPAQEQSTVLRAIEVQIGRTGAATPVARLE 361 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G ++TNATLHN D I L D+RVGD V+V+RAG+VIP+VV +I Sbjct: 362 PVQVAGVIVTNATLHNADQIARL-----------DVRVGDTVIVRRAGDVIPEVVRVIEA 410 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R P P++ P+ CP+C S +V++ + RC+GGLAC+AQ+ E ++HF SR Sbjct: 411 RRPPGTLPWTMPAVCPVCGSELVKEDD------AVTWRCSGGLACAAQRKEAVRHFASRR 464 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI--------------- 524 A +IEGLG++Q D + ++ AD++ L+ Sbjct: 465 ALDIEGLGERQADALVE----FGFVQSLADLYALRVEDLVRMKAALDAASSADLLQAVEE 520 Query: 525 ----------------ENILGFGD------------------VSVTNLYDSINKRRNISL 550 + + G+ NL I+ R +L Sbjct: 521 SKGALVLDAAGYAALAQQVPGWRHADFLRRHLAVDLGGKLATKWAENLLAGIDASRATTL 580 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+F+LGI H+G A++LA + S F + ++ L +P +G +A+ Sbjct: 581 SRFLFALGIPHLGETTAKALAHWLGSL-AFVRSTPAVL---------LQALPDIGGEVAR 630 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR 638 AI F++ P N V+AL+ Sbjct: 631 AIATFFEQPGNAAVVDALIAAGIGFADE 658 Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 75/175 (42%), Gaps = 14/175 (8%) Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + +L + +G + A+ LA Y + + + Sbjct: 672 AHLLSTLPVDKLGGKSAQRLAATYGTLDALLRANESGWTGAGLSAAGAAN---------- 721 Query: 611 AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +V + +P + EA ++ + + + ++ + V TG+L ++ R A+ Sbjct: 722 -LVAYLADPAQRQGLLDAEAAMQRLLDAAPQQPTRHGGPLDGQTAVLTGSLTQLTRDAAK 780 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + LGA V+ +S+KT ++ G GSKL+KAQ+LGV + +E Q L L ++ Sbjct: 781 ARLEALGAKVAGSVSKKTSFVVAGSEAGSKLDKAQELGVVVWDERQLLTFLAEHE 835 >gi|332141274|ref|YP_004427012.1| DNA ligase, NAD-dependent [Alteromonas macleodii str. 'Deep ecotype'] gi|327551296|gb|AEA98014.1| DNA ligase, NAD-dependent [Alteromonas macleodii str. 'Deep ecotype'] Length = 517 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 196/550 (35%), Positives = 297/550 (54%), Gaps = 42/550 (7%) Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237 P+ +EVRGEV++ + F LN+ G K +ANPRNAA+G LR+L+ R L Sbjct: 5 DAHPDRVEVRGEVFMPREGFAKLNEHQKNAGGKVFANPRNAAAGSLRQLDSKITAKRPLM 64 Query: 238 FFVHGLGKTSEIFAK---GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 F+ + LG E L ++ G P+ + A G + YY+ + R Sbjct: 65 FYAYSLGVVQPDNFTLPTTHSERLSQLGKWGLPLCPDIDTAEGGRGCLDYYHHILEKRDN 124 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 LPYDIDG+V+KV+ LQ LG AR+PRW I+ KF ++ T+LLD++ Q+GRTG +TP Sbjct: 125 LPYDIDGVVFKVNRIDLQAALGFVARAPRWAIAQKFPAQEEVTKLLDVEFQVGRTGAITP 184 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VARLEPV +GG ++NATLHN+D I L ++VGD V+++RAG+VIP+VV Sbjct: 185 VARLEPVFVGGVTVSNATLHNQDEITRL-----------GVKVGDTVVIRRAGDVIPQVV 233 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 ++ +R +FPS CP+C S+V + + A RCTGGL C+AQ+ + LKH Sbjct: 234 SVVDTKRTGSETDIAFPSQCPVCGSQVEKLEDE------AVARCTGGLICAAQRKQALKH 287 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 F SR AF+I+GLG + +D A + PAD FTL S + + + S Sbjct: 288 FASRKAFDIDGLGDKLVDQLVD----ADLVHSPADFFTL------SLGDVVGLERMAEKS 337 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + L S+ + +L +F+++LGIR VG A +LA ++ + Sbjct: 338 ASKLLSSLEASKQTTLAKFLYALGIREVGEATAANLAAHFETLDAIRDA----------S 387 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLV 653 +L+ V VG+I+A I F+ N ++ALLKE + + + +E K V Sbjct: 388 IEALVEVQDVGEIVATHIFNFFNESHNTDVIDALLKEGINWPAIEKPDADNLPLEGKTCV 447 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 TGTL ++ R A+ + LGA V+ +S+ TD ++ G+ GSKL KAQ+L V++ +E + Sbjct: 448 ITGTLSEMGRSDAKARLQLLGAKVAGSVSKNTDFLVAGEKAGSKLTKAQELDVEVWDEAK 507 Query: 714 FLFLLQQYNT 723 + L + Sbjct: 508 LIAFLAENEK 517 >gi|302668858|ref|YP_003832683.1| NAD-dependent DNA ligase LigA2 [Butyrivibrio proteoclasticus B316] gi|302397198|gb|ADL36101.1| NAD-dependent DNA ligase LigA2 [Butyrivibrio proteoclasticus B316] Length = 745 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 192/753 (25%), Positives = 315/753 (41%), Gaps = 76/753 (10%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 AL + ++K+ L+ ++ YY P + D EYD L + A P Sbjct: 9 ALGEQLSKKDYEKLKNKLMDLARAYYDDDAPKVSDHEYDMLMVQLKACEKKNPSWVTD-- 66 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + IGG + KVTH +P LS+E ++N E +++++ + + FT+ Sbjct: 67 -DSISQVIGGTASSKFSKVTHDVPMLSIEDVFNKESVKEWMENVK-----TNYPDAGFTV 120 Query: 131 EPKIDGTMITIRYEKG-------------KFVYAALRGDGHSGEDVSACIRAIPTIPRV- 176 E KIDG T+RY+ V A RG+G GEDV+ + IP +P+ Sbjct: 121 EEKIDGLSCTLRYKTNDTEPYDEANCVCYDLVLAETRGNGIIGEDVTENVLQIPDVPKRL 180 Query: 177 --LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT- 233 + +VRGE+Y+ +F N++ + GRKP ANPRN A+G LR+ + Sbjct: 181 FLSHDLYGDSFQVRGEIYMKHENFEKFNEKEVKAGRKPAANPRNLAAGTLRQKEAVLVKE 240 Query: 234 ---RYLNFFVHGL-GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK 289 F V + G T +I + QYE +Q ++ GF Sbjct: 241 RGLNMFIFRVQKVEGATRDILTRTQYEAMQILKKDGFKTAICGFARTFEEVEALIDEYET 300 Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349 YDIDG V K+D Q ++ I++K+ +K+ R+ DID+ +GRT Sbjct: 301 HKDGRFGYDIDGAVVKIDVIEHQDDFSTSSKYIPGHIAYKYPQKEQKARVTDIDVALGRT 360 Query: 350 GILTPVARLE------PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLV 403 G LT A + P+ + G ++ TLHN DYI+ R I +G + Sbjct: 361 GKLTFTAVVCDDETGEPLQMCGTSVSRVTLHNMDYIR-----------ERHIGIGGVYGI 409 Query: 404 KRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463 ++GE+IPK+ + I + F P+ CP C S +V L + Sbjct: 410 FKSGEIIPKLTETIYK---EPERLFEVPTVCPFCGSPIVN--------LGSTDYFCSNDN 458 Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED-------PAFSIRIPADIFTLQRR 516 C + +++L +FV RD NIEGL + + F + + + Sbjct: 459 CKERAIQQLDYFVGRDQMNIEGLSIESIRFLDSKGYINASAPASLYFQAEKWHEDGVFAK 518 Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576 +EN G+ + SV NL +I+K R R + S G+ +VG A+ L K Sbjct: 519 LGKPEIHLENEDGWSEKSVENLVTAIDKSRTSDFIRVLASFGLPNVGHGQAKLLKKAIEK 578 Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN---------PRNICAVEA 627 + + ++ GD+I + + +F Q+ Sbjct: 579 FDGKEANYFGRLLEMYKAGYDFSKIEGFGDVIKKTLNDFCQSILDLGIPDKDHTAQKYVD 638 Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTD 686 LL V + +S +E V TG+ + + R ++ + LG VS +S KT Sbjct: 639 LLDAVDILFIEEKAAGASSLEGLTFVVTGSFENYKPRKLLEDEIESLGGKVSGTVSAKTS 698 Query: 687 IIIVGDNPGS--KLEKAQQLGVKIMNEEQFLFL 717 +I D S K +KA++LGVKI++E+++ + Sbjct: 699 YLINNDTTSSSGKNKKAKELGVKIISEQEYRAM 731 >gi|326445394|ref|ZP_08220128.1| DNA ligase [Streptomyces clavuligerus ATCC 27064] Length = 687 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 187/738 (25%), Positives = 298/738 (40%), Gaps = 76/738 (10%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 L ++A S +R E + Q + YY + D+ YD L+R A P Sbjct: 3 TLPAVQAQSAVSSRTEYEAALQRLRDASRAYYGDGDSPLDDATYDQLRRSVLAWEQENP- 61 Query: 65 LARSEDPNGPLNKI--GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P+ P + G V H+ P LSL+ + + E L + + R Sbjct: 62 --AEVSPDSPTGLVADGAAPVGD---VAHTTPLLSLDNVSDAEGLTAWGLSVQRRLGHVP 116 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 FT+EPK+DG + RY G+ V RG G GEDVS I I +P L+L + Sbjct: 117 QGG--FTVEPKLDGAAVAARYRGGRLVQVITRGVGSHGEDVSHVIGQIDGLPEQLTLPV- 173 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHG 242 +EVRGEV ++ F N+ A + +ANPRN +G LR + F+ +G Sbjct: 174 -TVEVRGEVAFTQEQFETANEVRAAHNEQVFANPRNGVAGTLRA-KGRSYQLRMTFWAYG 231 Query: 243 LGK----TSEIFAKGQYEMLQKMRCLGFPVNNGV----RQANTFHGIVSYYNEMKSIRST 294 + E L + +G + + ++R+ Sbjct: 232 AVELDSVAYLPAGATHAETLAAVAAVGIQTTADSPAGLHVVADLASAQQRVDAIAAMRAG 291 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 LP IDG+V K+D+ + Q G +R P W I+ K + T L D+ ++GRTG+L P Sbjct: 292 LPVGIDGVVVKLDDATEQAAAGVGSRFPHWAIAFKLPAVERQTVLEDVVWEVGRTGVLAP 351 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 A L PV I G+ +T ATLHN I+ RD+ +GD V V +AG++IP+V Sbjct: 352 TAILAPVEIDGSTVTRATLHNPADIRR-----------RDLHIGDAVTVFKAGDIIPRVQ 400 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 + R A+ P CP C + K RC + + + Sbjct: 401 GPVAQLRPEGAREVPLPEVCPNCGGEIN--------KAQERWRC--AKGTACALPALIGY 450 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 R+ +IEGLGK + +S + AD+FTL Q T+ + Sbjct: 451 AAGREMLDIEGLGKTYVAALVES----GYVTDIADLFTLSAEQLTTASGS-------AKR 499 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 L + I + + L R +LG+ G ++R +A+++ + Q D Sbjct: 500 AAKLAEQIEAAKALPLSRVFCALGVLGTGRSMSRRIARHFGDMGSIRQA----------D 549 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKK 651 +L V +G A IVE Q ++ L+ E + + + K Sbjct: 550 AAALRDVEGIGPEKAPVIVE--QVASLAPVIDKLIAAGVSMAEPREASPAGDAGPLAGKV 607 Query: 652 LVFTGTLQK----IQRHKAQEYVTQLGAVVSAILSRKTDIII----VGDNPGSKLEKAQQ 703 +V TG + R + + + G + ++ KT I++ G P +K KA + Sbjct: 608 VVVTGKMTGPLAAYARAEMTALIERAGGRAGSSVNAKTSILVAAPSAGGKPSTKAIKAAE 667 Query: 704 LGVKIMNEEQFLFLLQQY 721 LGV++ E F L+ + Sbjct: 668 LGVEVHTPEDFAELVADF 685 >gi|254389746|ref|ZP_05004971.1| DNA ligase [Streptomyces clavuligerus ATCC 27064] gi|197703458|gb|EDY49270.1| DNA ligase [Streptomyces clavuligerus ATCC 27064] Length = 719 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 187/738 (25%), Positives = 298/738 (40%), Gaps = 76/738 (10%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 L ++A S +R E + Q + YY + D+ YD L+R A P Sbjct: 35 TLPAVQAQSAVSSRTEYEAALQRLRDASRAYYGDGDSPLDDATYDQLRRSVLAWEQENP- 93 Query: 65 LARSEDPNGPLNKI--GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P+ P + G V H+ P LSL+ + + E L + + R Sbjct: 94 --AEVSPDSPTGLVADGAAPVGD---VAHTTPLLSLDNVSDAEGLTAWGLSVQRRLGHVP 148 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 FT+EPK+DG + RY G+ V RG G GEDVS I I +P L+L + Sbjct: 149 QGG--FTVEPKLDGAAVAARYRGGRLVQVITRGVGSHGEDVSHVIGQIDGLPEQLTLPV- 205 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHG 242 +EVRGEV ++ F N+ A + +ANPRN +G LR + F+ +G Sbjct: 206 -TVEVRGEVAFTQEQFETANEVRAAHNEQVFANPRNGVAGTLRA-KGRSYQLRMTFWAYG 263 Query: 243 LGK----TSEIFAKGQYEMLQKMRCLGFPVNNGV----RQANTFHGIVSYYNEMKSIRST 294 + E L + +G + + ++R+ Sbjct: 264 AVELDSVAYLPAGATHAETLAAVAAVGIQTTADSPAGLHVVADLASAQQRVDAIAAMRAG 323 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 LP IDG+V K+D+ + Q G +R P W I+ K + T L D+ ++GRTG+L P Sbjct: 324 LPVGIDGVVVKLDDATEQAAAGVGSRFPHWAIAFKLPAVERQTVLEDVVWEVGRTGVLAP 383 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 A L PV I G+ +T ATLHN I+ RD+ +GD V V +AG++IP+V Sbjct: 384 TAILAPVEIDGSTVTRATLHNPADIRR-----------RDLHIGDAVTVFKAGDIIPRVQ 432 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 + R A+ P CP C + K RC + + + Sbjct: 433 GPVAQLRPEGAREVPLPEVCPNCGGEIN--------KAQERWRC--AKGTACALPALIGY 482 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 R+ +IEGLGK + +S + AD+FTL Q T+ + Sbjct: 483 AAGREMLDIEGLGKTYVAALVES----GYVTDIADLFTLSAEQLTTASGS-------AKR 531 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 L + I + + L R +LG+ G ++R +A+++ + Q D Sbjct: 532 AAKLAEQIEAAKALPLSRVFCALGVLGTGRSMSRRIARHFGDMGSIRQA----------D 581 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKK 651 +L V +G A IVE Q ++ L+ E + + + K Sbjct: 582 AAALRDVEGIGPEKAPVIVE--QVASLAPVIDKLIAAGVSMAEPREASPAGDAGPLAGKV 639 Query: 652 LVFTGTLQK----IQRHKAQEYVTQLGAVVSAILSRKTDIII----VGDNPGSKLEKAQQ 703 +V TG + R + + + G + ++ KT I++ G P +K KA + Sbjct: 640 VVVTGKMTGPLAAYARAEMTALIERAGGRAGSSVNAKTSILVAAPSAGGKPSTKAIKAAE 699 Query: 704 LGVKIMNEEQFLFLLQQY 721 LGV++ E F L+ + Sbjct: 700 LGVEVHTPEDFAELVADF 717 >gi|149911742|ref|ZP_01900348.1| NAD-dependent DNA ligase [Moritella sp. PE36] gi|149805167|gb|EDM65187.1| NAD-dependent DNA ligase [Moritella sp. PE36] Length = 482 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 202/507 (39%), Positives = 287/507 (56%), Gaps = 33/507 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ K++ +L ++ ++ YY P + D+EYD L R + FP+LA + Sbjct: 1 MKEQAKQIQTLTLQLEEYNHQYYVLDNPTVPDAEYDRLLRELKQLETEFPELALA---TS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+GGE ++ H IP LSL+ +++ E+L F R+ K I F+ EPK Sbjct: 58 PTQKVGGEALTGFSQIQHEIPMLSLDNVFSAEELLAFEKRLQDRLLTKA--EIKFSCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG ++I YE G FV AA RGDG GED+S ++ I +IP L N PE +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVFVRAATRGDGQIGEDISENVKTIKSIPLRLRGNDFPERLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250 + K F LN G K + NPRNAA+G LR+L+P F + LG Sbjct: 176 MPKAGFDLLNVNAKKKGEKTFVNPRNAAAGSLRQLDPKIAASRPLAFNAYSLGVVEGEVE 235 Query: 251 ----AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + E LQK++ G PV V A + G + +Y ++ R +L YDIDG+VYKV Sbjct: 236 GKGLSNSHAENLQKLKLWGIPVCADVTVAMGYQGCLDFYEQIGERRDSLSYDIDGVVYKV 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ +LQK LG AR+PRW SHKF ++ T LLD++ Q+GRTG +TPVARLEPV +GG Sbjct: 296 DDLALQKTLGFVARAPRWATSHKFPAQEEITTLLDVEFQVGRTGAITPVARLEPVFVGGV 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++NATLHN D I L I++ D+V+++RAG+VIP+V +++ R DAQ Sbjct: 356 TVSNATLHNSDEIARL-----------GIKIKDQVIIRRAGDVIPQVARVMLERRPDDAQ 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 FP+ CP+C S V R A RCT GL C AQ+ E +KHF SR A N++GL Sbjct: 405 DIVFPATCPVCDSEVERIEGE------ATVRCTAGLYCGAQRKEAIKHFASRKALNVDGL 458 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTL 513 G + ++ A I+ PAD+FT+ Sbjct: 459 GDKLVEQLVD----ADLIKTPADLFTV 481 >gi|331695637|ref|YP_004331876.1| DNA ligase [Pseudonocardia dioxanivorans CB1190] gi|326950326|gb|AEA24023.1| DNA ligase [Pseudonocardia dioxanivorans CB1190] Length = 812 Score = 357 bits (917), Expect = 3e-96, Method: Composition-based stats. Identities = 184/575 (32%), Positives = 290/575 (50%), Gaps = 32/575 (5%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P + + R+ ++L E++ H YY P++ D ++D L R A+ +PDL Sbjct: 17 PAPEPAPDADRERHAALATEVADHQFRYYVLDAPVVSDGQFDELWRELVALEERYPDLV- 75 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P K+G H LSL+ ++ ++LR + R+ R + Sbjct: 76 --SPDSPTQKVGSRFATEFAAHDHLERMLSLDNAFSADELRTWAERVGREIG----TDVH 129 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPE 183 + E KIDG + + YE GK V A RGDG +GEDV+ +R + +P L+ +P Sbjct: 130 YLCELKIDGLAVNLLYENGKLVRALTRGDGRTGEDVTLNMRTLAEVPEQLTGTAEFPVPA 189 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 ++EVRGEVY DF ALN ++ G+ P+ANPRN A+G LR+ +P +R L HG Sbjct: 190 LLEVRGEVYFRLEDFQALNASLVEAGKPPFANPRNTAAGSLRQKDPRVTASRNLRLICHG 249 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 LGK + + +R G PV+ + +V++ R + ++IDG+ Sbjct: 250 LGKREGFNPERLSQAYDALRAWGLPVSGRTKIVQGIDQVVAHVEYWGEHRHDIEHEIDGI 309 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KVDE +LQ++LG +R+PRW I+ K+ ++A+TRLLDI + +GRTG +TP A +EPV Sbjct: 310 VVKVDEVALQRRLGATSRAPRWAIAFKYPPEEATTRLLDIRVNVGRTGRVTPFAFMEPVT 369 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G+ ++ ATLHN D ++ + + +GDRV++++AG+VIP+V+ I++ R Sbjct: 370 VAGSTVSLATLHNADEVRR-----------KGVLIGDRVVIRKAGDVIPEVLGPIIDVRD 418 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 + F P+ CP C + + RC +C AQ ERL H R AF+ Sbjct: 419 GSEREFVMPTHCPECGTELAHQ-----KAGDVDIRCPNARSCPAQLRERLFHVAGRGAFD 473 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEGLG + A + D+F L G + L D++ Sbjct: 474 IEGLGYEAATALLN----AGVVADEGDVFALTEEDLLRVDLFRTKAGVLSANGRKLLDNL 529 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577 K ++ L R + L IRHVG A++LA+ + S Sbjct: 530 EKAKDRPLWRVLVGLSIRHVGPTAAQALAREFGSL 564 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 58/120 (48%) Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 V VG IA A+ +++ + V + + +V +E +V TG++ Sbjct: 679 VEGVGPTIATAVRDWFTVDWHRDVVAKWRAAGVRMVDEVDTSVPRTLEGMSIVVTGSMAG 738 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R +A+E + G + +S+KT ++ GD PGSK +KA +L V I++E F LL Sbjct: 739 YSRDEAKEAIAARGGRAAGSVSKKTSFVVAGDAPGSKYDKALELRVPILDEAGFGVLLAD 798 >gi|203287992|ref|YP_002223007.1| DNA ligase [Borrelia recurrentis A1] gi|254781265|sp|B5RPQ2|DNLJ_BORRA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|201085212|gb|ACH94786.1| DNA ligase [Borrelia recurrentis A1] Length = 669 Score = 357 bits (917), Expect = 3e-96, Method: Composition-based stats. Identities = 190/702 (27%), Positives = 335/702 (47%), Gaps = 53/702 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + + E+ SL I D YY S P + D YD R + + +P+ + P Sbjct: 3 KDIKDEILSLRDAIKKWDREYYVDSSPTVGDVTYDKALLRLQYLENRYPEYKTL---DSP 59 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 K G ++ ++ HS P LSL+K +++++L ++ ++ + + EPKI Sbjct: 60 TLKFGSDLLNDFKEIEHSYPILSLDKAYDVKELLLWVEKMS-LEGSNLGFDMGISAEPKI 118 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I + Y+ G A RGDG G +V +R I +P + + + +RGE+YI+ Sbjct: 119 DGCSIVLYYKDGILEKALTRGDGRFGNNVIENVRTIKNVPLCIGERVE--LVLRGEIYIT 176 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 K DFL +N + Y N RN SGILRR+N ++ + S + Sbjct: 177 KKDFLKINHTL----DDSYINARNLTSGILRRINSREVVNFPLDIFVYDILYSSLKLNTN 232 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 ++ K++ GF +N + + I++Y E++ R Y+IDG+V KV++F L Sbjct: 233 HDAFDKLKHFGFKLNPFCKFFCGKNLGENIINYVKEIEEQRERFEYEIDGVVLKVNDFRL 292 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 + LG + P+W I++KF +A ++++DI +Q+GR+G +TPVA +E V I GA IT+A Sbjct: 293 RDVLGYTSHHPKWSIAYKFESLRAVSKVIDIVVQVGRSGKITPVANIEKVLIAGAFITSA 352 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHN+DYI + + V D V + R G+VIP V ++ + F P Sbjct: 353 SLHNQDYIDSI-----------GLNVKDVVAISRRGDVIPAVELVVEKLSVGN---FKIP 398 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 ++CP C+ ++++ AH + C + + +K+F S+ NI GL ++ + Sbjct: 399 NYCPSCKKSLIKEG---------AHLFCVNIHCPLKIMGHIKYFCSKKCMNIVGLSEKTI 449 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 +F F I D++T + + GF V L SI + +N + Sbjct: 450 EFLFNMN----FISSEIDLYTFDFDRLIG------LKGFNFKRVNKLKRSIEESKNRPFK 499 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + ++GI+ +G + N I+ + N + + L+ + +G+ IA Sbjct: 500 KLLLAMGIKDLGINTILL---LINNNLNSFDAISLLCQDNKNALVKLLDIKGIGERIAFN 556 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQE 668 I+ + + + K++ + N SS + KK TG+ + RH + Sbjct: 557 IIRAFNDKIILDKF-NFFKKLGFKMQEDSMNCVIDSSFLFGKKFCITGSFDEYSRHVLID 615 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +T+ GA+ + +SR D ++VG +PG KL+KA LG+KI++ Sbjct: 616 KITKKGAIFHSAVSRYLDFLLVGKSPGLKLKKANNLGIKILS 657 >gi|291529755|emb|CBK95341.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Eubacterium rectale M104/1] Length = 709 Score = 357 bits (916), Expect = 4e-96, Method: Composition-based stats. Identities = 166/749 (22%), Positives = 298/749 (39%), Gaps = 93/749 (12%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 + L +++ + YY I+ + E+D + + + P+ P +K+G Sbjct: 6 RMKELVNKLNEASNAYYNGKDEIMSNHEWDTMFDQLAQLEEE----TGIILPDSPTSKVG 61 Query: 80 GEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 + L KV H P LSL+K +I + K ++ S + K+DG Sbjct: 62 ADEIGGNGLKKVRHEFPALSLDKTKDIYEFPKVFSK---------AASGDCVVMHKLDGC 112 Query: 138 MITIRYEK------GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 + + Y+ G+ V A RG+G G D++ I IP + + VRGE Sbjct: 113 TLCLTYDGSRNGGCGRLVQAVTRGNGEIGSDMTYQASYIEGIPMT--IGFKGKLIVRGEA 170 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 ++ ++F +N + G + Y+NPRN A+ + P R + F L Sbjct: 171 LMTYSEFERINSNL-EEGEEEYSNPRNLANSTITMKEPGLKGRKVIFKAFKLVYMEPAAD 229 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANT----------------FHGIVSYYNEMKSIRSTL 295 L G I++ N TL Sbjct: 230 DKIEVPATFFGALTLLERLGFGVVEHELARAYSSNPDVDSDLPDQIINVMNSFSDRVETL 289 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRW--MISHKFAEKQASTRLLDIDIQIGRTGILT 353 Y +DGLV D++ L P + K+A++ T L +I+ RTG + Sbjct: 290 DYPVDGLVVASDDYKTADALPVTGHHPNRLTGFAFKWADECVETTLREIEWSPSRTGRIN 349 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 PVA +PV + G +T A++HN +K L +RVGD++ V +A ++IP + Sbjct: 350 PVAVFDPVQLEGTTVTRASVHNVSIVKKLR-----------LRVGDKISVFKANKIIPCI 398 Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473 + S CP+C + + V CT C+ +Q+++ Sbjct: 399 DKNLTPG-DELTYAESHACTCPVCGMETSPMITHSGDRDVEVEMCTNP-NCAVKQVKKFV 456 Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533 HF RD +I GL ++ L+ F + I+ AD++ L ++ I + GFG Sbjct: 457 HFCERDCMDIVGLSEKTLEKFIEK----GFIKQLADLYRLDTFERN----IAAMDGFGQK 508 Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNN 592 S N++ SI R + FI +LGI VG A+ K Y + + F ++ N Sbjct: 509 SYDNIWKSIQISRKTTFVPFIHALGIPMVGKGQAKLFDKAYKGNVKKFFNDVYNRK---- 564 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQ-----NPRNICAVEA------------LLKEVSPS 635 + + +G+ I ++ ++ P ++ LL+ + Sbjct: 565 ----TFTDIDGIGEKIELSLWDWGSRYLGWIPFEKDLLDEMRRTSCNTEVYDLLRWIDVE 620 Query: 636 I-GRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVG-- 691 I + K V TG++ + R + Q + +LG + +++KT +I Sbjct: 621 IPAEANVAGKDILSGKTFVITGSVNHFKNRAELQAKIEELGGKATGSVTKKTSYLINNDV 680 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ K +KA++LGV I++E++FL ++ + Sbjct: 681 ESTSGKNKKAKELGVPIISEDEFLEMIGE 709 >gi|302345294|ref|YP_003813647.1| DNA ligase (NAD+) [Prevotella melaninogenica ATCC 25845] gi|302149440|gb|ADK95702.1| DNA ligase (NAD+) [Prevotella melaninogenica ATCC 25845] Length = 673 Score = 356 bits (914), Expect = 6e-96, Method: Composition-based stats. Identities = 169/708 (23%), Positives = 290/708 (40%), Gaps = 67/708 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 KE+ SL +++ D YY ++ D E+DA + + P+ P + Sbjct: 3 KEIQSLVNQLNAASDAYYNGRDELMTDYEWDAAFDKLKKLEEE----TGIILPDSPTQNV 58 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 + K H P LSL K +EDL K+ + L K+DG Sbjct: 59 SADNVAG-KKEEHEFPALSLAKTKKVEDLAKWAE------------NKPIWLSWKLDGLT 105 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + + Y+ GK RG+GH G +++ AI I + + + +RGE IS DF Sbjct: 106 LVVTYDNGKLTKVVTRGNGHIGTNITHLSTAIDGILQT--IPYKGHLVIRGEAVISYPDF 163 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEM 257 N E + YANPRN ASG L + + R+L + L T E M Sbjct: 164 EQFNMEA----EEEYANPRNLASGSLTLKDINEVKARHLRWIPFTLVYTEEEINSWGGRM 219 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI-----RSTLPYDIDGLVYKVDEFSLQ 312 V+ + + T + I + + S PY +DGLV ++ Sbjct: 220 EWLEHQGFRVVDRELIEQPTVNNIEAVIHHWTERVTGVSSSPFPYPVDGLVISYEDTVYA 279 Query: 313 KQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 R + K+ ++ A T L I+ + ++PVA P+ + G + A Sbjct: 280 ATGSVTGHHATRAGYAFKWQDESAETELDYIEWSCAAST-ISPVAVFRPIELEGTTVKRA 338 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +L N + L K G ++ V +A ++IPKV+++I F P Sbjct: 339 SLCNISECERLGIGDK----------GTKIAVIKANKIIPKVINVI-----ESVGTFHIP 383 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C S + +G C A+QL++ FVS++ NI+GL +Q + Sbjct: 384 ETCPVCHSATEVSESEVSGTRTLH---CTNTHCPAKQLKKFGRFVSKEGVNIDGLSEQTV 440 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F +R AD+F L T++ + GFG+ SVT L +I K RN+ Sbjct: 441 QKFIN----LGWVREYADLFHLTEH----ATELRTMEGFGNKSVTKLLAAIEKARNVEAR 492 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R +F+L I VG ++ L Y + I + + +G + + Sbjct: 493 RLLFALNIPLVGQDVCNRLLSAYPLEELIKTAIE------SAAEDVFSTIAGIGPEKSAS 546 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670 V + ++ N ++ LL E++ S S + V TG + + R++ + Y+ Sbjct: 547 FVRWMKDTDNQSMLQHLLAELNVSQPSSAPTGDS-CQGLTFVVTGDVHHYKNRNELKAYI 605 Query: 671 TQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLF 716 G V+ +S+ T+ +I ++ K +KA++L + I++E++F+ Sbjct: 606 ESQGGKVTGSVSKSTNYLINNDVESTSGKNQKAKELSIPIISEDEFIA 653 >gi|71892277|ref|YP_278011.1| DNA ligase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123747814|sp|Q492G5|DNLJ_BLOPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|71796383|gb|AAZ41134.1| DNA ligase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 595 Score = 356 bits (913), Expect = 9e-96, Method: Composition-based stats. Identities = 210/622 (33%), Positives = 339/622 (54%), Gaps = 51/622 (8%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++++ L +++ + + YY ++ + D +YDA+ + + + +P L + P Sbjct: 4 VKQKIQKLRKKLRHWEYLYYTKNESAVSDEKYDAMLEKLNQLEQIYPHLIA---ESSPTQ 60 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +IGG + K+ H +P LSL I L F RI + ++ + + E KIDG Sbjct: 61 RIGGVSQYNFKKIHHKVPMLSLNSIVASFQLLSFDKRIK--IKLHANHVMSYCCELKIDG 118 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV------LSLNIPEIIEVRGE 190 +++ Y++GK +YAA RGDG GEDV+ I I +P +P ++E+RGE Sbjct: 119 VAVSLLYKEGKLIYAATRGDGKIGEDVTENISTIRAVPMCLKIDSNKYGKLPYLLEIRGE 178 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL--GKTS 247 V+ISK FL LN I G KP++N RNAASG LR+L+P+ TR L+F+ +G+ Sbjct: 179 VFISKLCFLELNKITIQQGNKPFSNARNAASGSLRQLDPSVTATRPLSFYCYGISNYCGE 238 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + +E LQ G P+NN +R + + ++ YY+ +K+IRS L ++IDG+V KV+ Sbjct: 239 KELPDSHWERLQLCENWGLPINNYIRLISGVNKVLEYYSYIKTIRSNLEFNIDGIVIKVN 298 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + Q +LG +R+P W +++KF + +S ++ ++ Q+GRTGI+TP+A LEP+ I Sbjct: 299 SCAYQSKLGCGSRAPHWALAYKFPSEVSSAKVDNVIFQVGRTGIITPIAYLEPIVISDVT 358 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 I +HN + +K L + +GD V ++R+G+VIPK+V++I++ER + Sbjct: 359 IRKVNMHNINEVKRL-----------GLMIGDTVRIQRSGDVIPKIVEVILSERTDHVKT 407 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P FCP+C SR+ KT + + RCT GL+C AQ+ L+HFVS+ A NI G+G Sbjct: 408 IELPRFCPVCGSRI------KTWRNQSILRCTAGLSCLAQRKATLEHFVSKKAMNIYGMG 461 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + +D I +D+F L + K+ + GFG ++ L SI + Sbjct: 462 NKIIDQLVNQ----GLIFTSSDVFRLNK------NKLLCLEGFGLENIERLLRSIEDSKK 511 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 I+L RFI++LGI VG +A +LA Y + +N A D SL + VG I Sbjct: 512 ITLARFIYALGIYGVGETVASNLAIVYKTIENLAAA----------DLQSLSNLKYVGPI 561 Query: 608 IAQAIVEFYQNPRNICAVEALL 629 IA I F++NP N+ V+ L+ Sbjct: 562 IANNIYHFFRNPDNLKNVQDLI 583 >gi|117926963|ref|YP_867580.1| Fis family transcriptional regulator [Magnetococcus sp. MC-1] gi|166215818|sp|A0LDY1|DNLJ_MAGSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|117610719|gb|ABK46174.1| transcriptional regulator, Fis family [Magnetococcus sp. MC-1] Length = 768 Score = 356 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 220/617 (35%), Positives = 318/617 (51%), Gaps = 47/617 (7%) Query: 113 RIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT 172 R R W + + + EPK+DG ++ Y +G V AA RGDG GEDV+A R I Sbjct: 172 RRLRLWAAEQPQRVEYVAEPKLDGLAFSLTYAEGVLVRAATRGDGQEGEDVTAHARTIQD 231 Query: 173 IPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT- 230 +P L P ++EVRGEVY+ F LN E G K +ANPRNAA+G LR+L+P Sbjct: 232 VPLRLQGAGYPALLEVRGEVYMPLATFEKLNAEARERGEKTFANPRNAAAGSLRQLDPKI 291 Query: 231 DITRYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK 289 +R L F +G G A E+L ++ G V+ + G ++Y + Sbjct: 292 TASRGLRMFCYGTGYVEGGTLADRYAEILAALKGWGLRVSPEAERVEGAQGCLAYTERLG 351 Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349 R TLPY+IDG V KVD L+++LG AR+PRW ++ KF + ST + ID+Q+GRT Sbjct: 352 EKRETLPYEIDGAVLKVDSQRLRERLGFVARAPRWAMAFKFPATEESTTVQAIDLQVGRT 411 Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409 G++TPVARLEPV +GG +TNATLHN + +D+RVGDRV+V+RAG+V Sbjct: 412 GVITPVARLEPVAVGGVTVTNATLHNFLELAR-----------KDVRVGDRVIVRRAGDV 460 Query: 410 IPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 IP+VV +I E H + P CP+C + R+ A RC+GGL C AQ Sbjct: 461 IPEVVRVIPRESHGALAVYKEPVACPVCGAPTEREGGET------ALRCSGGLTCRAQVK 514 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529 E +KHF SR A NIEGLG + + + A + +D++ L ++Q + + Sbjct: 515 EGVKHFASRKAMNIEGLGDKLVALLMQ----AGLVERISDLYRLHEQRQ----VLVGLER 566 Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 G SV NL ++I + + S RF+F LGIR VG +A SLA ++ S Sbjct: 567 LGGKSVANLLEAIEQSKAQSAARFLFGLGIRDVGVTLAGSLAAHFTSLDALMAAT----- 621 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--------- 640 L+ + VG+++A+ +V F+ + + AL + G Sbjct: 622 -----VEDLVGIEDVGEVVARRVVHFFAQAHHGAELAALRALGVAAAGEPWRVEPDGHGV 676 Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700 + +V TGTL + R A + LGA V A +S KT ++ G++ GSKL K Sbjct: 677 AAAEQPLSGLSVVLTGTLAGLTREAAAVRLEGLGAKVVASVSGKTGCLVCGESAGSKLAK 736 Query: 701 AQQLGVKIMNEEQFLFL 717 AQ+ GV +++E L Sbjct: 737 AQKAGVPVLDEAALEGL 753 Score = 148 bits (373), Expect = 3e-33, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 3/102 (2%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 + L + ++++ Y+ ++ D+EYD L R ++ A P L + P +++G Sbjct: 5 RAAELRKRLNHYAHSYHTLDTSLVSDAEYDRLFRELQSLEAADPTLI---SADSPTHRVG 61 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 G + KV H + LSL+ ++ +DL +F R+ + Sbjct: 62 GAILEGFEKVRHRVAMLSLDNAFSAQDLVEFHRRVQEGLAES 103 >gi|225572684|ref|ZP_03781439.1| hypothetical protein RUMHYD_00873 [Blautia hydrogenotrophica DSM 10507] gi|225039920|gb|EEG50166.1| hypothetical protein RUMHYD_00873 [Blautia hydrogenotrophica DSM 10507] Length = 622 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 167/691 (24%), Positives = 294/691 (42%), Gaps = 84/691 (12%) Query: 43 ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102 + + EYD L + + N P ++G + L K TH P LSL+K Sbjct: 1 MSNLEYDRLYDELVKLEQE----TKVILANSPTVQVGYQALDELPKETHETPMLSLDKTK 56 Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162 ++E+LR+FI K+DG I + YE+GK A RG+G GE Sbjct: 57 DMEELREFIGDHRSLL------------SWKLDGLTIVLTYEEGKLSKAVTRGNGIVGEV 104 Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222 ++ R IP L++ + +RGE I+ +DF +N + + Y NPRN SG Sbjct: 105 ITNNARVFQNIP--LTIPYKGKLVLRGEAVITYSDFERINASIAQI-EARYKNPRNLCSG 161 Query: 223 ILRR-LNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM-RCLGFPVNNGVRQANTFHG 280 +R+ N R + F L ++ + + + + GF V + Sbjct: 162 SVRQLSNEITAKRNVQFLAFALVSAQDVDFRNSRDFQMRWLKSQGFDVVEYRIVTSENLE 221 Query: 281 IVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLL 340 + DGLV D+ + LG ++ PR + K+A++ T L Sbjct: 222 --ESVQYFSEAVERNDFPSDGLVAIYDDIAYGDSLGSTSKFPRNSYAFKWADETKETVLK 279 Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400 +++ RTG++ PVA EPV + G ++ A++HN +K L + +GD Sbjct: 280 EMEWSPSRTGLINPVAIFEPVELEGTTVSRASVHNISILKELQ-----------LGIGDH 328 Query: 401 VLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG 460 + V +A +IP++ + + + + P CP+C + Sbjct: 329 IQVYKANMIIPQIAENLTR-----SGNLTIPDACPVCGQEARVI-----KENEVESLYCM 378 Query: 461 GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS 520 C A++++ FVSRDA N+EGL + L+ I DIF L+R ++ Sbjct: 379 NPQCQAKRIKAFTLFVSRDAMNVEGLSEATLEKLIAR----GFIHDFGDIFELERYRE-- 432 Query: 521 TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580 +I + G G+ S NL SI K R+ +L + I+SLGI ++G A+ + +++ Sbjct: 433 --QITEMEGLGEKSFDNLVSSIEKARDTTLPKMIYSLGIPNIGLANAKVICRHFD----- 485 Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 ++ N + + +G +IA+ +V F +N N +E L+ + + + Sbjct: 486 ----YDLERLKNASEDEVSGIDGIGPVIAKNLVRFLENEENQKKLEHLVSHLR--LEKPA 539 Query: 641 KNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD------- 692 + + +E V TG+++ R+ +E + + G V+ ++ KT +I D Sbjct: 540 ETLKKSLEGLNFVITGSVEHFPNRNAVKEAIEEQGGKVTGTVTSKTSYLINNDTASSSSK 599 Query: 693 ----NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGV I++EE+FL +L Sbjct: 600 NKKA---------KALGVPIISEEEFLEMLN 621 >gi|317502616|ref|ZP_07960737.1| NAD-dependent DNA ligase LigA [Prevotella salivae DSM 15606] gi|315666297|gb|EFV05843.1| NAD-dependent DNA ligase LigA [Prevotella salivae DSM 15606] Length = 665 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 156/717 (21%), Positives = 281/717 (39%), Gaps = 59/717 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ ++ R + L +++ + YY + D E+DAL + + P Sbjct: 1 MAEDKLRT-MRELVDKLNSAANAYYNGQGEQMSDYEWDALFDEVKHLEKE----TGQQFP 55 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P N++ + + K H P LSL K +L K+ L Sbjct: 56 DSPTNRVSEDNIIG-KKEEHEFPALSLAKTKQPVELAKWAE------------EHPIWLS 102 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG + + + GK RG+GH G +++ AI IP+ + + VRGE Sbjct: 103 WKLDGLTLVVTFNNGKLTKVVTRGNGHIGTNITHLATAIQGIPQE--IKNKGHVVVRGEC 160 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 IS DF N + YANPRN ASG L + ++ + ++ ++ Sbjct: 161 VISYADFEQFN----IESEEEYANPRNLASGSLTLKDINEVKQRHLVWIPFTLVYTDEVI 216 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANT---FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + + G + V K PY +DGLV D+ Sbjct: 217 TSWGKRMDWLEKNGMKAVEREEIEHPTLQNIEQVIAKWTEKVTGKENPYPVDGLVITYDD 276 Query: 309 FSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + R ++ K+ ++ A T L ++ ++PVA PV++ G Sbjct: 277 TAFAQTGSVTGHHATRAGLAFKWQDESADTVLDHVEWSCAA-NTISPVAVFSPVDLEGTS 335 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + A+L N + L G+ G ++ V +A ++IPKV+ +I D Sbjct: 336 VKRASLCNISECERLGIGGQ----------GTKLSVIKANKIIPKVIRVIEKVGDLDIP- 384 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 C + + CT + Q + FVS++ NI+G+ Sbjct: 385 ------CSCPVCNAPTRITISSASETKTLHCTNPKCPAKQL-RKFARFVSKEGVNIDGMS 437 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 +Q + F ++ AD++ L+ ++ + GFG+ SV NL SI K R+ Sbjct: 438 EQTVAKFIN----FGWVKTYADLYKLKDH----AIQLSSTDGFGEKSVRNLLRSIEKARD 489 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 + F+++L I G ++ + L Y + +G Sbjct: 490 VEAHHFLYALSIPLCGQDVCKRLLSAYSLQDIITIASGKSENIVPASDSPFSLIAGIGPE 549 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKA 666 + +V ++ + N+ VE LL++V S S + V TG + + R++ Sbjct: 550 KSNQVVTWFHDEENLAMVEELLQQVRVSQENTAAEGDS-CKGLTFVVTGDVTHYKNRNEL 608 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQQY 721 + Y+ G V+ +S+ TD +I D SK +KAQQLG+ I++EE+F+ + Sbjct: 609 KAYIESQGGKVTGSVSKSTDYLINNDVASQSSKNQKAQQLGIPIISEEEFIEKFGKE 665 >gi|261880335|ref|ZP_06006762.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270333026|gb|EFA43812.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 665 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 165/707 (23%), Positives = 292/707 (41%), Gaps = 61/707 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L ++++ D YY ++ D E+DAL + I P+ P N++ Sbjct: 5 QRMQELVEQLNRASDAYYNGRDELMSDYEWDALFDKLKLIEQE----TGKTLPDSPTNRV 60 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 + K H TLSL K ++DL K+ T L K+DG Sbjct: 61 SEDNITG-QKEEHEFATLSLAKTKLVDDLVKWAT------------GRPIWLSWKLDGLT 107 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + + Y+ GK RG+GH G +++ +AI IP + + +RGE IS DF Sbjct: 108 LVVTYDNGKLTKVVTRGNGHIGTNITHLAKAIAGIP--QKIKNKGHVVIRGEAIISYEDF 165 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 N YANPRN ASG L +P ++++ ++ S+ + Sbjct: 166 EQFN----MENDAEYANPRNLASGSLTLKDPNEVSQRNIRWIPFTLVHSDEDISSWGSRM 221 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVS---YYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 +R G + + ++ PY +DGLV D+ + Sbjct: 222 DFLRENGMQCVDHECIEQPTLENIQKAIDQWTLRVTNRENPYPVDGLVIVYDDTAYASTG 281 Query: 316 GERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 R + K+ ++ A T L +I+ + ++PVA PV + G + A+L Sbjct: 282 SVTGHHATRAGYAFKWQDESADTELEEIEWSCAAST-ISPVAVFRPVELEGTTVKRASLC 340 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N + L GK G ++ V +A ++IPKV+ + P C Sbjct: 341 NISECERLGIGGK----------GTKLAVIKANKIIPKVIKVY-----EKVGELETPHEC 385 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S ++P +G C A++L++ + F+S+D +++G+ +Q + F Sbjct: 386 PVCKSPTEIIVSPSSGTRTLH---CTNETCPAKELKKFRRFLSKDGMDVDGISEQTISKF 442 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + ADI+ L +I + GFG+ S N+ SI K R + RF+ Sbjct: 443 IN----LGWVAEYADIYHLPAH----AGQIARLEGFGEKSAANMVSSIEKSRKVEARRFL 494 Query: 555 FSLGIRHVGAEIARSLAKYY--LSYQNFAQEINNIIAHNNDDWLSLIR-VPLVGDIIAQA 611 ++L I VG + L Y N L+ +P +G + + Sbjct: 495 YALSIPLVGKDACNRLLSTYALTDLINMVTGRGKSTDLFTPAPGDLLAMIPGIGPETSAS 554 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670 +V ++ + RN V+ LL+EV + + E+ V TG + + R++ + Y+ Sbjct: 555 LVNWFSDVRNQTIVDRLLQEVVIE-QVSIEPTGKKCESLTFVVTGDVHHYKNRNELKAYI 613 Query: 671 TQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFL 715 G V+ +S+ T +I D + K +KAQQL + I++E++F+ Sbjct: 614 ESQGGKVTGSVSKSTSFLINNDVTSTSGKNQKAQQLHIPIISEDEFI 660 >gi|260202156|ref|ZP_05769647.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T46] gi|289444580|ref|ZP_06434324.1| DNA ligase, NAD-dependent [Mycobacterium tuberculosis T46] gi|289417499|gb|EFD14739.1| DNA ligase, NAD-dependent [Mycobacterium tuberculosis T46] Length = 517 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 169/545 (31%), Positives = 271/545 (49%), Gaps = 31/545 (5%) Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +PE++EVRGEV+ +DF ALN ++ G+ P+ANPRN+A+G LR+ +P R L Sbjct: 1 MPEVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMI 60 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 HGLG ++ +R G PV+ A G+ + R + ++I Sbjct: 61 CHGLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEI 120 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KVDE +LQ++LG +R+PRW I++K+ ++A T+LLDI + +GRTG +TP A + Sbjct: 121 DGVVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMT 180 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G+ + ATLHN IK + + +GD V++++AG+VIP+V+ +V Sbjct: 181 PVKVAGSTVGQATLHNASEIKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVE 229 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R + F P+ CP C S + + + A RC C Q ER+ H SR+ Sbjct: 230 LRDGSEREFIMPTTCPECGSPLAPE-----KEGDADIRCPNARGCPGQLRERVFHVASRN 284 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 +IE LG + +++ I ++F L R T G + L Sbjct: 285 GLDIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLL 340 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +++K + L R + +L IRHVG AR+LA + S A L Sbjct: 341 VNLDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAIAAA----------STDQLA 390 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 V VG IA A+ E++ + V+ + +++V + +V TG+L Sbjct: 391 AVEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLT 450 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R A+E + G + +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F LL Sbjct: 451 GFSRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLLA 510 Query: 720 QYNTT 724 + Sbjct: 511 DGPAS 515 >gi|288802753|ref|ZP_06408191.1| DNA ligase [Prevotella melaninogenica D18] gi|288334903|gb|EFC73340.1| DNA ligase [Prevotella melaninogenica D18] Length = 673 Score = 353 bits (906), Expect = 5e-95, Method: Composition-based stats. Identities = 169/708 (23%), Positives = 290/708 (40%), Gaps = 67/708 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 KE+ SL +++ D YY ++ D E+DA + + P+ P + Sbjct: 3 KEIQSLVNQLNAASDAYYNGRDELMTDYEWDAAFDKLKKLEEE----TGIILPDSPTQNV 58 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 + +V H P LSL K +EDL K+ + L K+DG Sbjct: 59 SADNVAGKKEV-HEFPALSLAKTKKVEDLAKWAE------------NRPIWLSWKLDGLT 105 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + + Y+ GK RG+GH G +++ AI I + + + +RGE IS DF Sbjct: 106 LVVTYDNGKLTKVVTRGNGHIGTNITHLSTAIDGILQT--IPYKGHLVIRGEAVISYPDF 163 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEM 257 N E + YANPRN ASG L + + R+L + L E M Sbjct: 164 EQFNMEA----EEEYANPRNLASGSLTLKDINEVKARHLRWIPFTLVYAEEEINSWGGRM 219 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI-----RSTLPYDIDGLVYKVDEFSLQ 312 V+ + + T I + + S PY +DGLV D+ Sbjct: 220 EWLEHQGFRVVDRELIEQPTIANIKAVIHHWTERVTGASTSPFPYPVDGLVITYDDTVYA 279 Query: 313 KQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 R + K+ ++ A T L I+ + ++PVA PV++ G + A Sbjct: 280 ATGSVTGHHATRAGYAFKWQDESAETELNYIEWSCAAST-ISPVAVFRPVDLEGTTVKRA 338 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +L N + L K G ++ V +A ++IPKV+++I F P Sbjct: 339 SLCNISECERLGIGDK----------GTKIAVIKANKIIPKVINVI-----ESVGTFHIP 383 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C S + +G C A+QL++ FVS++ NI+GL +Q + Sbjct: 384 ETCPVCHSATEVSESEVSGTRTLH---CTNTHCPAKQLKKFGRFVSKEGVNIDGLSEQTV 440 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F +R AD+F L T++ + GFG+ SVT L +I K RN+ Sbjct: 441 QKFIN----LGWVREYADLFHLTEH----ATELRTMEGFGNKSVTKLLAAIEKARNVEAR 492 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R +F+L I VG ++ L Y + + + +G + + Sbjct: 493 RLLFALNIPLVGQDVCNRLLSAYPLEELIKTAT------GSAAEDVFSTIAGIGPEKSAS 546 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670 V + ++ N ++ LL E++ S +S + V TG + + R++ + Y+ Sbjct: 547 FVRWIKDTDNQSMLQHLLVELNVSQLSSAPTGNS-CQGLTFVVTGDVHHYKNRNELKAYI 605 Query: 671 TQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLF 716 G V+ +S+ T+ +I ++ K +KA++L + I++E++F+ Sbjct: 606 ESQGGKVTGSVSKSTNYLINNDVESSSGKNQKAKELSIPIISEDEFIA 653 >gi|281420079|ref|ZP_06251078.1| putative DNA ligase [Prevotella copri DSM 18205] gi|281405879|gb|EFB36559.1| putative DNA ligase [Prevotella copri DSM 18205] Length = 656 Score = 352 bits (904), Expect = 1e-94, Method: Composition-based stats. Identities = 167/714 (23%), Positives = 292/714 (40%), Gaps = 65/714 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E+ ++ SL + ++ D YY ++ D E+DAL + + ++ PN Sbjct: 1 MEEKLLQMKSLVERLNQASDSYYNGKGELMTDYEWDALFDQLKRLEEETGEIL----PNS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P N++ + + K H LSL K + DL K+ + K Sbjct: 57 PTNRVSEDSIVG-KKEEHEFAALSLAKTKQVSDLVKWAE------------DRPIWISWK 103 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG + + Y+ GK RG+GH G +++ AI IP +S + VRGE I Sbjct: 104 LDGLTLVVTYDGGKLTKIVTRGNGHIGTNITHLAPAISGIPATISE--KGHLVVRGEAVI 161 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAK 252 S DF I YANPRN ASG L + + R++ + L T + Sbjct: 162 SYADFEQF----IIESEGDYANPRNLASGSLTLKDIEEVKQRHIQWIPFTLVYTERELSS 217 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM--KSIRSTLPYDIDGLVYKVDEFS 310 M PV T I ++ K P+ +DGLV D+ + Sbjct: 218 WGERMQMLKDLGMNPVERERIDHPTTENIQLEIDKFTEKVTSKKNPFPVDGLVICYDDTA 277 Query: 311 LQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 R + K+ ++ A T L I+ + +TPVA +PV + G + Sbjct: 278 YAATGSVTGHHATRAGFAFKWQDEHADTVLDHIEWSCAAST-ITPVAVFKPVELEGTTVQ 336 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+L N + L K G R+ V +A ++IPKV++I F Sbjct: 337 RASLCNVSECERLGIGDK----------GTRLQVIKANKIIPKVINITEVV-----GSFV 381 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C + V + K + AC A+QL++ FVS++ NI+G+ +Q Sbjct: 382 IPAECPVCHAPAVVRESESGTKTLH----CTNAACPAKQLKKFARFVSKEGINIDGISEQ 437 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F I AD + L+ +I GFG SV+NL +S+ K R+ Sbjct: 438 TVWKFINH----GFISEYADFYKLKNY----AFEISCFEGFGKKSVSNLLESVEKSRHTD 489 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +++L I G ++A+ L Y + ++ + +G + Sbjct: 490 GRHLLYALNIPLCGGDVAKKLLSRYKVKELIETARLSMFD------DEFASIDGIGPEKS 543 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQE 668 + ++++ + V+ LL E+ + ++ + V TG + + R++ + Sbjct: 544 AKFIAWFKDDVHFLHVQHLLSELIIE-EQEPVETGNKCQGLTFVVTGDVHHYKNRNELKA 602 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQQ 720 Y+ G V+ +S+ T+ +I D SK +KA +L + I+ E++F+ Q+ Sbjct: 603 YIESQGGKVTGSVSKSTNFLINNDAASQSSKNKKAHELNIPIITEDEFIEKFQE 656 >gi|315608256|ref|ZP_07883246.1| NAD-dependent DNA ligase LigA [Prevotella buccae ATCC 33574] gi|315250037|gb|EFU30036.1| NAD-dependent DNA ligase LigA [Prevotella buccae ATCC 33574] Length = 662 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 160/712 (22%), Positives = 287/712 (40%), Gaps = 65/712 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ ++ R+++ + ++ D YY ++ D E+DAL R + + P Sbjct: 1 MTEDK-RQQMRQFVERLNAASDAYYNGQPELMTDYEWDALFDRLRQLEEETGE----TLP 55 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+ + K H P LSL K E+L K+ L Sbjct: 56 DSPTAKVSADDVKG-QKEEHEFPALSLAKTKRPEELVKWAE------------GRPIWLS 102 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG + Y+ G+ RG+GH G +++ +AI +P + +RGE Sbjct: 103 WKLDGLTLVATYDGGRLTKVVTRGNGHIGTNITHLAQAINGLP--ARIKSAGHTVIRGEA 160 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 IS DF N + YANPRN ASG L + + R++ + L T E Sbjct: 161 VISYEDFERFN----MESDEEYANPRNLASGSLTLKDVNEIKQRHIRWIPFTLVYTDEEI 216 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM--KSIRSTLPYDIDGLVYKVDE 308 M PV + T + + K PY +DGLV D+ Sbjct: 217 DAWGKRMDWLEANGFKPVERELIANPTLEEVETVIARWTEKVTHRINPYPVDGLVISYDD 276 Query: 309 FSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + R ++ K+ ++ A T L ++ T ++PVA PV + G Sbjct: 277 TAYAATGAVTGHHATRAGLAFKWQDEAAETELDHVEWS-CATNTISPVAVFRPVELEGTT 335 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + A+L N + L G G R+ V +A ++IPKV+ +I Sbjct: 336 VKRASLCNISECRRLGIGGS----------GTRLSVIKANKIIPKVIKVI-----ETVGE 380 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P CP+C + +++ CT + Q + + S++A NI+G+ Sbjct: 381 FDIPGKCPVCCAPT--EISISGMSDTETLHCTNDACPAKQLKKFTRFV-SKEAMNIDGIS 437 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 +Q L F + AD++ L+ Q+ ++ + GFG+ S N+ S+ K R+ Sbjct: 438 EQTLAKFIN----LGWVGEYADLYHLREHQR----ELAGLEGFGERSAANIMASVEKSRD 489 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R +F+L I GA++ + L Y + ++ +P +G Sbjct: 490 AEAHRLLFALSIPLCGADVCKRLLSAYPLADLLSTA------RTVENLDHFAHIPGIGPE 543 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKA 666 + + + + ++ N V+ LL E+ S E ++ V TG + + R++ Sbjct: 544 KSASFINWNRSQANQQLVDHLLCEIRVS-QVSEVPQGNKCAGLTFVITGDVYHFKNRNEL 602 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLF 716 + Y+ G V+ +S T +I ++ K +KA+ LG++I++E+ F+ Sbjct: 603 KSYIESEGGKVAGSVSGATSFLINNDVESTSGKNKKAKLLGIEIISEDDFIS 654 >gi|300785073|ref|YP_003765364.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32] gi|299794587|gb|ADJ44962.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32] Length = 663 Score = 351 bits (900), Expect = 3e-94, Method: Composition-based stats. Identities = 199/719 (27%), Positives = 324/719 (45%), Gaps = 80/719 (11%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-GPL 75 A++ + L I+ D YY+ P++ D+EYDA++ ++ A P+ P+ PL Sbjct: 3 AQERIPELADRITVLRDAYYR-GSPLVADAEYDAVEDELRSLIEAHPEF----TPDPNPL 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +++G L + HS P LSLEK E + F R + PK+D Sbjct: 58 DQVGAPAVLH-APIRHSRPMLSLEKATKPEQVEAFFDR---------FPGQPVVVMPKLD 107 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + YE G+ A RGDG +G+DV+ +RA+ P +EVRGE + + Sbjct: 108 GLSLAVVYENGRLARAVTRGDGTTGDDVTKLVRALTDGIPEQVEA-PGRVEVRGEAVMLR 166 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQ 254 + F A N A KP NPRNAA+G LR +P R L FF L + Sbjct: 167 STFAAYN---TAHPDKPLINPRNAAAGTLRAKDPATVAERRLRFFAFDLYTEPDSAETDL 223 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 L + +R+ S E++ R+ L YD+DG V ++ Sbjct: 224 GSALHTLGF----TAADMRRCADAAEAQSVIGEIEQQRNELDYDLDGAVLRLASRDAYAA 279 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 G R+ SPR ++ KFA ++ +T L D+ +G+TG + PVA LEPV +GG +T ATL Sbjct: 280 AGTRSSSPRGALAFKFAAEEKTTVLSDVVWDVGKTGKIAPVAWLEPVFVGGTTVTRATLA 339 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI-IVNERHPDAQPFSFPSF 433 N++ I+ R I++GD VLV+RAG+VIP V + ++R + P Sbjct: 340 NQEVIR-----------ARGIKIGDTVLVRRAGDVIPFVAGVLDASKRTGAEREIVPPEV 388 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C + N + ++C AQ + RL H+ SR A +I+ +G ++ Sbjct: 389 CPSCGQPLTEQGNSRE-------LFCTNVSCPAQTVRRLIHWASRAAADIDAIGGVWIER 441 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + A + P+D + L + K+ G+VS T + +SI+ R + L R Sbjct: 442 LAE----AGILENPSDFYGLTKE------KLLEFDRIGEVSATRMIESIDASRGVGLRRA 491 Query: 554 IFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 + L I A L + + S ++ A+ L+ V +G +A ++ Sbjct: 492 LIGLAIPMASEGTAARLCRAGFGSLEDVAEA----------GVDGLVAVEDIGPKVAASL 541 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTL------QKI 661 +E R +E L K R E + + K +V TG + +K+ Sbjct: 542 IEHLT--RLRPELERLRKAGVSLDVREEDLPPVVAAGAPLAGKTVVVTGAISDPRSGEKV 599 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQ-FLFLL 718 R Q + GA + +S TD++I G + G SKL KA++ GV+++++ + + L+ Sbjct: 600 PRPTFQRLCERAGATTATSVSASTDLLITGADVGASKLTKAEKHGVEVVDQGEIWQQLI 658 >gi|289767058|ref|ZP_06526436.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24] gi|289697257|gb|EFD64686.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24] Length = 703 Score = 351 bits (899), Expect = 4e-94, Method: Composition-based stats. Identities = 195/716 (27%), Positives = 319/716 (44%), Gaps = 88/716 (12%) Query: 39 SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98 + D YD L R A PD P+ P K+ G V H++P LSL Sbjct: 39 GSSPLDDDAYDRLARGIAAWEAEHPDEVL---PDSPTGKVAGGAAEG--DVPHTVPMLSL 93 Query: 99 EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158 + +++ E+ + + R ++ F++ PK+DG + RY +G+ RGDG Sbjct: 94 DNVFSPEEFTVWTASLARRIDREV---TRFSVGPKLDGLAVAARYREGRLTRLITRGDGT 150 Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218 +GEDVS I + +P L+ + +EVRGE+ ++ F N+ I G +P+ANPRN Sbjct: 151 AGEDVSHAIGTVEGLPGTLAEPV--TVEVRGEILMTTAQFEHANEVRIRHGGQPFANPRN 208 Query: 219 AASGILRRLNPTDITRYLNFFVHGL--------GKTSEIFAKGQYEMLQKMRCLGFPVNN 270 AA+G LR FF +GL + E+++ LG + Sbjct: 209 AAAGTLRAKERAYTVPMT-FFGYGLLALPGTDAALAGRLEELPYSELMETAAGLGVHTSA 267 Query: 271 GVRQ----ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 G T +V+ E+ ++R+ LP+ IDG+V K D + ++ G +R+PRW I Sbjct: 268 GTAVPDVVVGTPEQVVARVQEIAALRAELPFGIDGIVVKADLAADRRAAGSGSRAPRWAI 327 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386 ++K + TRLL+++ +GRTGI+ P LEPV I G+ IT ATLHN I Sbjct: 328 AYKLPAVEKITRLLEVEWNVGRTGIIAPRGVLEPVVIEGSTITYATLHNPADITR----- 382 Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446 R +R+GD V+V RAG+VIP++ + + R + QP FP CP C S + Sbjct: 383 ------RGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGEEQPIVFPEACPRCGSDIDTSEE 436 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506 RC G C + L + RD +IEGLG ++ + A + Sbjct: 437 --------RWRCAQGRNC--HLVASLAYAAGRDQLDIEGLGTTRVVQLVE----AGLVAD 482 Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 AD+F L+R Q + G+ S NL ++ + + L R + +LG+R G + Sbjct: 483 LADLFLLRREQL------LALERMGETSTDNLLAALARAKEQPLSRVLCALGVRGTGRSM 536 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 +R +A+Y+ + + D ++ RV +G A ++V ++ Sbjct: 537 SRRIARYFATMDHIRAA----------DAEAMQRVDGIGVEKAPSVVAEIAELA--PLID 584 Query: 627 ALLKEVSPSIGR------------------HEKNVSSEIENKKLVFTGT----LQKIQRH 664 L + K+V TG L+++ R+ Sbjct: 585 RLAAAGVNMTEPGATPPRPADTDGADGATAEAPGDGGPLAGMKVVVTGAMTGNLERLSRN 644 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + E + + G S+ +S+ T +++ G+ GSK KA+QLGV++ E+F L+ Sbjct: 645 EMNELIERAGGRSSSSVSKNTSLVVAGEGAGSKRAKAEQLGVRLATPEEFAVLVAD 700 >gi|256783179|ref|ZP_05521610.1| DNA ligase [Streptomyces lividans TK24] Length = 690 Score = 351 bits (899), Expect = 4e-94, Method: Composition-based stats. Identities = 195/716 (27%), Positives = 319/716 (44%), Gaps = 88/716 (12%) Query: 39 SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98 + D YD L R A PD P+ P K+ G V H++P LSL Sbjct: 26 GSSPLDDDAYDRLARGIAAWEAEHPDEVL---PDSPTGKVAGGAAEG--DVPHTVPMLSL 80 Query: 99 EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158 + +++ E+ + + R ++ F++ PK+DG + RY +G+ RGDG Sbjct: 81 DNVFSPEEFTVWTASLARRIDREV---TRFSVGPKLDGLAVAARYREGRLTRLITRGDGT 137 Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218 +GEDVS I + +P L+ + +EVRGE+ ++ F N+ I G +P+ANPRN Sbjct: 138 AGEDVSHAIGTVEGLPGTLAEPV--TVEVRGEILMTTAQFEHANEVRIRHGGQPFANPRN 195 Query: 219 AASGILRRLNPTDITRYLNFFVHGL--------GKTSEIFAKGQYEMLQKMRCLGFPVNN 270 AA+G LR FF +GL + E+++ LG + Sbjct: 196 AAAGTLRAKERAYTVPMT-FFGYGLLALPGTDAALAGRLEELPYSELMETAAGLGVHTSA 254 Query: 271 GVRQ----ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 G T +V+ E+ ++R+ LP+ IDG+V K D + ++ G +R+PRW I Sbjct: 255 GTAVPDVVVGTPEQVVARVQEIAALRAELPFGIDGIVVKADLAADRRAAGSGSRAPRWAI 314 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386 ++K + TRLL+++ +GRTGI+ P LEPV I G+ IT ATLHN I Sbjct: 315 AYKLPAVEKITRLLEVEWNVGRTGIIAPRGVLEPVVIEGSTITYATLHNPADITR----- 369 Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446 R +R+GD V+V RAG+VIP++ + + R + QP FP CP C S + Sbjct: 370 ------RGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGEEQPIVFPEACPRCGSDIDTSEE 423 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506 RC G C + L + RD +IEGLG ++ + A + Sbjct: 424 --------RWRCAQGRNC--HLVASLAYAAGRDQLDIEGLGTTRVVQLVE----AGLVAD 469 Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 AD+F L+R Q + G+ S NL ++ + + L R + +LG+R G + Sbjct: 470 LADLFLLRREQL------LALERMGETSTDNLLAALARAKEQPLSRVLCALGVRGTGRSM 523 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 +R +A+Y+ + + D ++ RV +G A ++V ++ Sbjct: 524 SRRIARYFATMDHIRAA----------DAEAMQRVDGIGVEKAPSVVAEIAELA--PLID 571 Query: 627 ALLKEVSPSIGR------------------HEKNVSSEIENKKLVFTGT----LQKIQRH 664 L + K+V TG L+++ R+ Sbjct: 572 RLAAAGVNMTEPGATPPRPADTDGADGATAEAPGDGGPLAGMKVVVTGAMTGNLERLSRN 631 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + E + + G S+ +S+ T +++ G+ GSK KA+QLGV++ E+F L+ Sbjct: 632 EMNELIERAGGRSSSSVSKNTSLVVAGEGAGSKRAKAEQLGVRLATPEEFAVLVAD 687 >gi|166215594|sp|Q93IZ8|DNLJ2_STRCO RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 2 Length = 700 Score = 350 bits (897), Expect = 6e-94, Method: Composition-based stats. Identities = 195/715 (27%), Positives = 319/715 (44%), Gaps = 88/715 (12%) Query: 39 SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98 + D YD L R A PD P+ P K+ G V H++P LSL Sbjct: 36 GSSPLDDDAYDRLARGIAAWEAEHPDEVL---PDSPTGKVAGGAAEG--DVPHTVPMLSL 90 Query: 99 EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158 + +++ E+ + + R ++ F++ PK+DG + RY +G+ RGDG Sbjct: 91 DNVFSPEEFTVWTASLARRIDREV---TRFSVGPKLDGLAVAARYREGRLTRLITRGDGT 147 Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218 +GEDVS I + +P L+ + +EVRGE+ ++ F N+ I G +P+ANPRN Sbjct: 148 AGEDVSHAIGTVEGLPGTLAEPV--TVEVRGEILMTTAQFEHANEVRIRHGGQPFANPRN 205 Query: 219 AASGILRRLNPTDITRYLNFFVHGL--------GKTSEIFAKGQYEMLQKMRCLGFPVNN 270 AA+G LR FF +GL + E+++ LG + Sbjct: 206 AAAGTLRAKERAYTVPMT-FFGYGLLALPGTDAALAGRLEELPYSELMETAAGLGVHTSA 264 Query: 271 GVRQ----ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 G T +V+ E+ ++R+ LP+ IDG+V K D + ++ G +R+PRW I Sbjct: 265 GTAVPDVVVGTPEQVVARVQEIAALRAELPFGIDGIVVKADLAADRRAAGSGSRAPRWAI 324 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386 ++K + TRLL+++ +GRTGI+ P LEPV I G+ IT ATLHN I Sbjct: 325 AYKLPAVEKITRLLEVEWNVGRTGIIAPRGVLEPVVIEGSTITYATLHNPADITR----- 379 Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446 R +R+GD V+V RAG+VIP++ + + R + QP FP CP C S + Sbjct: 380 ------RGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGEEQPIVFPEACPRCGSDIDTSEE 433 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506 RC G C + L + RD +IEGLG ++ + A + Sbjct: 434 --------RWRCAQGRNC--HLVASLAYAAGRDQLDIEGLGTTRVVQLVE----AGLVAD 479 Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 AD+F L+R Q + G+ S NL ++ + + L R + +LG+R G + Sbjct: 480 LADLFLLRREQL------LALERMGETSTDNLLAALARAKEQPLSRVLCALGVRGTGRSM 533 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 +R +A+Y+ + + D ++ RV +G A ++V ++ Sbjct: 534 SRRIARYFATMDHIRAA----------DAEAMQRVDGIGVEKAPSVVAEIAELA--PLID 581 Query: 627 ALLKEVSPSIGR------------------HEKNVSSEIENKKLVFTGT----LQKIQRH 664 L + K+V TG L+++ R+ Sbjct: 582 RLAAAGVNMTEPGATPPRPADTDGADGATAEAPGDGGPLAGMKVVVTGAMTGNLERLSRN 641 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + E + + G S+ +S+ T +++ G+ GSK KA+QLGV++ E+F L+ Sbjct: 642 EMNELIERAGGRSSSSVSKNTSLVVAGEGAGSKRAKAEQLGVRLATPEEFAVLVA 696 >gi|21225788|ref|NP_631567.1| DNA ligase [Streptomyces coelicolor A3(2)] gi|14495032|emb|CAC42149.1| putative DNA ligase [Streptomyces coelicolor A3(2)] Length = 723 Score = 350 bits (897), Expect = 6e-94, Method: Composition-based stats. Identities = 195/715 (27%), Positives = 319/715 (44%), Gaps = 88/715 (12%) Query: 39 SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98 + D YD L R A PD P+ P K+ G V H++P LSL Sbjct: 59 GSSPLDDDAYDRLARGIAAWEAEHPDEVL---PDSPTGKVAGGAAEG--DVPHTVPMLSL 113 Query: 99 EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158 + +++ E+ + + R ++ F++ PK+DG + RY +G+ RGDG Sbjct: 114 DNVFSPEEFTVWTASLARRIDREV---TRFSVGPKLDGLAVAARYREGRLTRLITRGDGT 170 Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218 +GEDVS I + +P L+ + +EVRGE+ ++ F N+ I G +P+ANPRN Sbjct: 171 AGEDVSHAIGTVEGLPGTLAEPV--TVEVRGEILMTTAQFEHANEVRIRHGGQPFANPRN 228 Query: 219 AASGILRRLNPTDITRYLNFFVHGL--------GKTSEIFAKGQYEMLQKMRCLGFPVNN 270 AA+G LR FF +GL + E+++ LG + Sbjct: 229 AAAGTLRAKERAYTVPMT-FFGYGLLALPGTDAALAGRLEELPYSELMETAAGLGVHTSA 287 Query: 271 GVRQ----ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 G T +V+ E+ ++R+ LP+ IDG+V K D + ++ G +R+PRW I Sbjct: 288 GTAVPDVVVGTPEQVVARVQEIAALRAELPFGIDGIVVKADLAADRRAAGSGSRAPRWAI 347 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386 ++K + TRLL+++ +GRTGI+ P LEPV I G+ IT ATLHN I Sbjct: 348 AYKLPAVEKITRLLEVEWNVGRTGIIAPRGVLEPVVIEGSTITYATLHNPADITR----- 402 Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446 R +R+GD V+V RAG+VIP++ + + R + QP FP CP C S + Sbjct: 403 ------RGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGEEQPIVFPEACPRCGSDIDTSEE 456 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506 RC G C + L + RD +IEGLG ++ + A + Sbjct: 457 --------RWRCAQGRNC--HLVASLAYAAGRDQLDIEGLGTTRVVQLVE----AGLVAD 502 Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 AD+F L+R Q + G+ S NL ++ + + L R + +LG+R G + Sbjct: 503 LADLFLLRREQL------LALERMGETSTDNLLAALARAKEQPLSRVLCALGVRGTGRSM 556 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 +R +A+Y+ + + D ++ RV +G A ++V ++ Sbjct: 557 SRRIARYFATMDHIRAA----------DAEAMQRVDGIGVEKAPSVVAEIAELA--PLID 604 Query: 627 ALLKEVSPSIGR------------------HEKNVSSEIENKKLVFTGT----LQKIQRH 664 L + K+V TG L+++ R+ Sbjct: 605 RLAAAGVNMTEPGATPPRPADTDGADGATAEAPGDGGPLAGMKVVVTGAMTGNLERLSRN 664 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + E + + G S+ +S+ T +++ G+ GSK KA+QLGV++ E+F L+ Sbjct: 665 EMNELIERAGGRSSSSVSKNTSLVVAGEGAGSKRAKAEQLGVRLATPEEFAVLVA 719 >gi|269103205|ref|ZP_06155902.1| DNA ligase [Photobacterium damselae subsp. damselae CIP 102761] gi|268163103|gb|EEZ41599.1| DNA ligase [Photobacterium damselae subsp. damselae CIP 102761] Length = 495 Score = 350 bits (897), Expect = 6e-94, Method: Composition-based stats. Identities = 196/532 (36%), Positives = 302/532 (56%), Gaps = 41/532 (7%) Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIF 250 + K F LN + G K +ANPRNAA+G LR+L+ TR L+F+ + +G Sbjct: 1 MPKKGFEQLNQRALKKGEKTFANPRNAAAGSLRQLDSKVTATRPLSFYAYAVGIVEGREL 60 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 QY+ L +++ GFP++ +R+ ++ ++ Y+ + R +L YDIDG+V KVD+ Sbjct: 61 EGSQYDRLCQLKSWGFPMSPEIRRVDSIEEVIRYHQMIGEKRESLEYDIDGVVIKVDKVD 120 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q QLG AR+PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEPV +GG ++N Sbjct: 121 TQLQLGFVARAPRWAIAYKFPAQEEMTLLNNVEFQVGRTGAITPVAKLEPVFVGGVTVSN 180 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L + VGD V+++RAG+VIP++V ++ + R DA P F Sbjct: 181 ATLHNADEIARL-----------GVMVGDTVIIRRAGDVIPQIVSVVESRRPADASPVIF 229 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS+V R A RCTGGL C AQ+ E LKHFVSR A +++G G++ Sbjct: 230 PTECPVCQSKVERIEGE------AVARCTGGLFCQAQRKEALKHFVSRKALDVDGCGEKV 283 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + PAD+F L S + + G S L D++ + +L Sbjct: 284 IEQLVDRE----MVTTPADLFRL------SAGVVTALDRMGPKSAQKLVDALGNAKETTL 333 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFI+SLGIR VG A +LA Y+ + + LI VP VG+I+A Sbjct: 334 SRFIYSLGIREVGEATAANLAHYFETLEALMTASK----------DQLIEVPDVGEIVAA 383 Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 I F++ N+ V L P I + +V E K +V TG+L ++ R +A+E Sbjct: 384 HIFNFFREEHNLAVVNDLRDVGIHWPDIEKVADDVELPFEGKTVVLTGSLSQLSRTEAKE 443 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + +LGA V+ +S+KTD+++ G+ GSKL KAQ+LG+++ +E+Q + +Q+ Sbjct: 444 ALQKLGAKVTGSVSKKTDLVVAGEAAGSKLTKAQELGIEVWDEQQLIDFMQR 495 >gi|281212695|gb|EFA86855.1| BRCT domain-containing protein [Polysphondylium pallidum PN500] Length = 1835 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 201/777 (25%), Positives = 333/777 (42%), Gaps = 114/777 (14%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PDLARSEDPNGPL 75 E+ + EI ++D YY S+ +I D +YD L +R + F P PL Sbjct: 58 EILKIRDEIKKYNDSYYNKSQSLISDYQYDMLFKRLATLESQFHQRFPHSKMLGQ--SPL 115 Query: 76 NKIGGEM---NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI--------YRFWQKKDDN 124 N +G + S KV HS+ LSL ++IE+L+ F RI D+ Sbjct: 116 NTVGAPLPQSQSSKSKVEHSVRMLSLNNAYSIEELQTFERRIVADCLHESRGGGDGDGDH 175 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTI----------- 173 I FTLE K DG ++ YE GK V RGDG GEDV+ C Sbjct: 176 QITFTLERKHDGIALSAIYEDGKLVRLVTRGDGIIGEDVTECGNIFINTGLPRELLPGSS 235 Query: 174 --PRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILR------ 225 S EVRGEV +SK L +N Y N RN SGILR Sbjct: 236 GGSSNNSPYKKGTFEVRGEVVLSKQQLLEINSSRAKANLPLYKNTRNTVSGILRAGRTIG 295 Query: 226 --RLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVS 283 + + V G + Q E L +++ LGF + V + + Sbjct: 296 EFDKDLIKFDFFAYQMVSGEESPTTTAITSQSESLAELKRLGFKCGDIVAIRSLAL-VDR 354 Query: 284 YYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDID 343 Y ++++ R + +DIDG+V KVD LQ++LGE R+PRW +++KF Q T L +I Sbjct: 355 YIDQLEMERPSYKWDIDGIVIKVDSLELQRRLGETERAPRWAVAYKFGASQYLTTLNEIV 414 Query: 344 IQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLV 403 +Q+GR+G +TPVA ++PV++ G ++ ATL+N ++K + ++R+GDRV++ Sbjct: 415 LQVGRSGKITPVAIVDPVDVHGVTVSRATLNNIQFVKRM-----------NLRLGDRVVI 463 Query: 404 KRAGEVIPKVVDI---------IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK--- 451 +RAG+VIP + V+ R F P C +R K + Sbjct: 464 ERAGDVIPYLTRYIDENNADGDQVDNREEMDDTTLARLFNPQCNDGKIRCPCEKKLELFT 523 Query: 452 -LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510 +A G C+ Q ++ FVS+D + G+G Q++ A I D+ Sbjct: 524 ADDSADHFCMGSECTLQLQGQILWFVSKDGMAMTGIGPSQVEALM----AAGLISDAGDL 579 Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 ++L+ ++ ++ I GF V N+ ++I + E + +LGI G ++L Sbjct: 580 YSLKDKRD----QMLQIPGFNKKRVDNILEAIETSKQRPFESVLCALGIPGFGKSRCKTL 635 Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ--NPRNICAVEAL 628 AK + ++ +N + +GD+ + F+ + +++L Sbjct: 636 AKSFKTFDQL----------SNTSLEDITNRVQLGDLTTYQLYSFFHPYDKAQQLGIDSL 685 Query: 629 LKEV------------------------------SPSIGRHEKNVSSEIENKKLVFTGTL 658 + ++ +P+ K++ + KK+V +GT Sbjct: 686 VNKLKSNGIGVEMNKQKSLKSKSTKAAQQSQQPSTPTSKPQNKSLLEMVAGKKVVVSGTF 745 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GSKLEKAQQLGVKIMNEEQF 714 R + + Q GA + +S TD +IV P SK+++A+ L + I++E++ Sbjct: 746 SIGSRDEVVTILEQNGAKSQSKVSSATDYLIVSQKPSSSKVKQAESLNIPILSEQEL 802 >gi|260591596|ref|ZP_05857054.1| putative DNA ligase [Prevotella veroralis F0319] gi|260536396|gb|EEX19013.1| putative DNA ligase [Prevotella veroralis F0319] Length = 676 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 168/708 (23%), Positives = 289/708 (40%), Gaps = 67/708 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 E+ SL ++++ D YY + I+ + E+DA R + P+ P + Sbjct: 3 DEIQSLVEQLNAASDAYYNGREEIMTNYEWDAAFDRLKKLEEE----TGIILPDSPTQNV 58 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 + K H P LSL K + +L K+ + L K+DG Sbjct: 59 SADNLTG-QKEEHEFPALSLAKTKKVAELAKWAE------------NRPIWLSWKLDGLT 105 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + + Y+ GK RG+GH G +++ +AI I + + + +RGE IS DF Sbjct: 106 LVVTYDNGKLTKVVTRGNGHIGTNITHLSKAIDGILQA--IPYKGHLVIRGEAVISYPDF 163 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEM 257 N + YANPRN ASG L N + R++ + L E M Sbjct: 164 EQFN----MESEEEYANPRNLASGSLTLKNINEVKERHIRWIPFTLVYEEEEIISWGNRM 219 Query: 258 LQKMRCLGFPVNNGVRQANTFHGI-----VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 + PV+ + + T I S PY +DGLV D+ + Sbjct: 220 AWLEQQGFKPVDRELIEQPTEANIQAVIDCWTERVTGKSSSPFPYPVDGLVITYDDTAYA 279 Query: 313 KQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 R + K+ ++ A T L I+ + ++PVA +PV + G + A Sbjct: 280 ATGSVTGHHATRAGYAFKWQDESAETELEYIEWSCAAST-ISPVAVFKPVELEGTTVKRA 338 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +L N + L K G ++ V +A ++IPKV++++ F P Sbjct: 339 SLCNISECERLGIGDK----------GTKIAVIKANKIIPKVINVVERL-----GVFHIP 383 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+CQS + +G C A+QL++ FVS++ NI+GL +Q + Sbjct: 384 EVCPVCQSATEVTESESSGTKTLH---CTNTHCPAKQLKKFGRFVSKEGINIDGLSEQTI 440 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F +R AD+F L +++ + GFGD SV+ L +I K RN+ Sbjct: 441 QKFIN----LGWVREYADLFHLNNH----ASELRTMDGFGDKSVSKLLTAIEKARNVEAH 492 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R +F+L I +G ++ L Y F + +G + + Sbjct: 493 RLLFALNIPLIGRDVCNRLLSAYQIADLFHTATEATTEDV------FATIAGIGPEKSAS 546 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670 V + ++ N ++ LL E++ S +S E V TG + + R++ + Y+ Sbjct: 547 FVRWMKDKDNYSMMQQLLVELNISQSSSAPTGNS-CEGLTFVITGDVHHYKNRNELKAYI 605 Query: 671 TQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLF 716 G V+ +S+ T +I ++ K +KA++L + I++EE+F+ Sbjct: 606 ENQGGKVTGSVSKSTSFLINNDIESSSGKNKKAKELSIPIISEEEFIA 653 >gi|282858246|ref|ZP_06267432.1| NAD-dependent DNA ligase domain protein [Prevotella bivia JCVIHMP010] gi|282588955|gb|EFB94074.1| NAD-dependent DNA ligase domain protein [Prevotella bivia JCVIHMP010] Length = 678 Score = 347 bits (890), Expect = 4e-93, Method: Composition-based stats. Identities = 161/726 (22%), Positives = 287/726 (39%), Gaps = 73/726 (10%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ ++ K + +L +++ D YY + D E+DA R A+ ++ P Sbjct: 1 MTEDK-HKIMEALVLQLNEASDAYYNGKGEAMTDFEWDAAFDRLKALEEELGEVL----P 55 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P N + + K H P LSL K + +L K+ L Sbjct: 56 NSPTNSVSADKLKG-QKEEHEYPALSLAKTKSETELAKWAE------------ERPIWLS 102 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG + + Y+ GK RG+GH G +++ AI I + I +RGE Sbjct: 103 WKLDGLTLVVTYDNGKLTKVVTRGNGHIGTNITHLAAAIDNILPTV--KANGHIVIRGEA 160 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 IS DF N + YANPRN ASG L + + R+L + L T E Sbjct: 161 VISYADFEQFN----LESEEEYANPRNLASGSLTLKDINEVKARHLRWIPFSLVHTDEEI 216 Query: 251 AKGQYEMLQKMR------CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 M + + + + PY +DGLV Sbjct: 217 ISWGDRMAFLDKLGFNTVERELITLPTAENIEKVIATWTLRVTDTTRKDKQPYPVDGLVI 276 Query: 305 KVDEFSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 D+ R + K+ ++ T L I+ + ++PVA +PV + Sbjct: 277 TYDDTEYAATGSVTGHHATRAGFAFKWQDESVETTLEYIEWSCATST-ISPVAVFKPVEL 335 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G + A+L N + L G +++V +A ++IPKV+ + Sbjct: 336 EGTTVKRASLCNISECERLGIGDA----------GTKLMVIKANKIIPKVISV-----TE 380 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 F+ P+ CP+C + +G C A+QL++ FVS++ NI Sbjct: 381 CLGSFTIPTTCPVCHQPTQIVESEASGTRTLH---CTNHHCPAKQLKKFARFVSKEGINI 437 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +GL +Q + F + AD+F LQ + ++ + GFG+ S NL +I Sbjct: 438 DGLSEQTVQKFIN----LGWVSEYADLFHLQEK----AEALKYMEGFGEKSCDNLLTAIE 489 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI----------IAHNND 593 K R + ++ +F+L I VG ++ L Y + + N+ + Sbjct: 490 KSRKVEAKQLLFALSIPLVGKDVCTRLLSAYPLEELINKSRENMVSPTLQRSLFEEPRPN 549 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653 + + +G + + V + Q+ N ++ LL+E++ S E + + V Sbjct: 550 NEEIFSTIDGIGPEKSASFVGWMQDDSNYAQLQRLLQELTVSQTSSEPK-GNLCQGLTFV 608 Query: 654 FTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMN 710 TG + + R++ + Y+ G V+ +S+ T +I D + K +KA++L + I++ Sbjct: 609 ITGDVHHYKNRNELKAYIESEGGKVTGSVSKSTHYLINNDVKSTSGKNKKAKELNIPILS 668 Query: 711 EEQFLF 716 E+ F+ Sbjct: 669 EDDFMA 674 >gi|255994850|ref|ZP_05427985.1| DNA ligase [Eubacterium saphenum ATCC 49989] gi|255993563|gb|EEU03652.1| DNA ligase [Eubacterium saphenum ATCC 49989] Length = 647 Score = 346 bits (888), Expect = 7e-93, Method: Composition-based stats. Identities = 162/709 (22%), Positives = 298/709 (42%), Gaps = 75/709 (10%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ L +S + YY + I+ + EYD L A+ + P +G Sbjct: 6 RMNELIDILSKANKAYYSDANEIMSNREYDELYDELQALEEE----SGIVLAASPTVNVG 61 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 E + SL K+ H LSL K ++++L +++ L PK+DG + Sbjct: 62 YEASSSLEKMAHEKKMLSLNKTKSVDELVEWL------------GEQEGLLSPKLDGLTV 109 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 I Y++G A RGDG GE ++ + IP L + + +RGE YI+ DF Sbjct: 110 VITYDEGSLKLAVTRGDGVEGEVITKNAKTFIGIP--LKIPYAGRLVLRGEAYITYGDFN 167 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN+E Y NPRN SG +R L+P+ R + F V + E + E + Sbjct: 168 KLNEE--IDDAAKYKNPRNLCSGSVRNLDPSITKERRVRFKVFSMLGGIEHGFNKKRECM 225 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + +GF V + T + N + +DGLV D+ LGE Sbjct: 226 KWLGDIGFDVVHTEMV--TGENLKDTMNSLMEELQNGDIPVDGLVLTYDDIKTCNLLGET 283 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 A+ P+ I+ K++++ T L ++ RTG++ PVA PV I G + A LHN D Sbjct: 284 AKYPKDSIAFKWSDELYDTELTGVEWNTSRTGLVNPVAVFSPVEISGTTVKRAALHNLDI 343 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 + GL + GD++ V +A +IP+V + I + +P CP+C Sbjct: 344 LDGLA-----------LGKGDKIRVYKANMIIPQVYENITR-----SGNIEYPKVCPVCG 387 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 + + C A +R+ HF + NI+G+ ++ ++ + Sbjct: 388 CGLKLETEGARVLRCVNDDCPAKNA------KRIVHFAGKSGINIKGISEKTIEKLIAT- 440 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 IR D+ ++ + +I + GF + S NL +I+ + ++L+RFI ++ Sbjct: 441 ---GIIRNEVDLLDIENYKD----EILKLDGFKEKSFENLKKAIDGAKTMTLQRFISAMA 493 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 +G A +A +++ + + +G+++ ++ + + Sbjct: 494 FTGIGYTNAGKIAAALG---------FDVMKLFELTPEKINNIEGLGEVLTESFMAELSD 544 Query: 619 P----RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQL 673 R ++ + + E++ KK V TG + + R ++ + Sbjct: 545 ENMKRRMREIIKRC------KFKEITRTRNDEVDGKKFVITGNVNIFKNRDDLKQKIEIS 598 Query: 674 GAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G V + +S TD +I ++ SK +KA++LG+ I++E+ +L + Sbjct: 599 GGQVVSSVSSNTDFLINNDRESTSSKNKKAKELGIAIISEKDIAEMLGE 647 >gi|320527941|ref|ZP_08029107.1| NAD-dependent DNA ligase OB-fold domain protein [Solobacterium moorei F0204] gi|320131567|gb|EFW24131.1| NAD-dependent DNA ligase OB-fold domain protein [Solobacterium moorei F0204] Length = 658 Score = 346 bits (887), Expect = 8e-93, Method: Composition-based stats. Identities = 174/713 (24%), Positives = 303/713 (42%), Gaps = 68/713 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S ++ + + + +++ D YY + D E+DAL R + Sbjct: 1 MSEDKL-ELMRQMVAQLNQAADAYYDGKAEQMTDYEWDALFDRLKKLEEE----TGVVLE 55 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+ + K H LSL K E++ K+ + Sbjct: 56 DSPTMKVSSDHTAG-QKEAHEFLALSLAKTKKPEEVEKWAE------------GKPIWIS 102 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG + + Y+ GK RGDGH G +++ AI IP+ +S + +RGE Sbjct: 103 WKLDGLTLVVTYDNGKLSKVVTRGDGHIGTNITHLSSAIHGIPQTISE--KGHLVIRGEA 160 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 IS DF + YANPRN ASG L + ++ + ++ +E Sbjct: 161 VISYEDFNQFV----MESGEDYANPRNLASGSLTLKDIEEVKKRQIHWIPFTLVYTEEDI 216 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM---KSIRSTLPYDIDGLVYKVDE 308 + + M LGF V + ++ E K + PY +DGLV D+ Sbjct: 217 TSWGKRMDYMEKLGFQVVERECVEHPTLANINKEIEQWTKKVTDAINPYPVDGLVVVYDD 276 Query: 309 FSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 R + K+ ++ ++L I+ + +TPVA EPV I G Sbjct: 277 TEYASGGSVTGHHATRAGFAFKWQDESVLSKLEYIEWSCAAST-ITPVAVFEPVEIEGTT 335 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + A+L N K L VG V V +A ++IPKV+ + Sbjct: 336 VKRASLCNISECKRLGIGD----------VGSEVEVIKANKIIPKVISVKHA-----EGS 380 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P CP+C S+ + D++ + + + +C A++L++ FVS+ +I+G+ Sbjct: 381 FHIPETCPVCHSKTIVDMSERGTETLK----CTNPSCPAKKLKKFNRFVSKAGMDIDGIS 436 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 +Q L F I DIF L + +I ++ GFG+ S TN+ +SI++ R Sbjct: 437 EQTLARFINE----GWITKYGDIFRLSKH----HEEITDLEGFGEKSATNIMESIDRARE 488 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 I + +++L I +G ++A+ L Y F + ++ IA N + + +G Sbjct: 489 IDESKLVYALNIPLIGKDVAKRLLSVYP----FRELVS--IARNTETTEVFSSIDGIGPE 542 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKI-QRHK 665 + A V + ++P NI +E LL E++ R +S + E V TG + R++ Sbjct: 543 KSNAFVSWCKDPENISQLEDLLDEITLQ--RTNTVLSGNLCEGLTFVVTGDVHHYANRNE 600 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLF 716 + Y+ G V+ +S+ T+ +I D + SK KA+QL + I++EE+F+ Sbjct: 601 LKAYIESQGGKVTGSVSKSTNYLINNDVTSSSSKNTKAKQLNIPILSEEEFIA 653 >gi|303281478|ref|XP_003060031.1| predicted protein [Micromonas pusilla CCMP1545] gi|226458686|gb|EEH55983.1| predicted protein [Micromonas pusilla CCMP1545] Length = 887 Score = 346 bits (887), Expect = 9e-93, Method: Composition-based stats. Identities = 235/827 (28%), Positives = 370/827 (44%), Gaps = 133/827 (16%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 AL + ++SL + IS D+ Y+ + P+ D+ YDA + R +A+ P + R Sbjct: 75 SALPASEVPAAMASLAEFISRADEAYHNDADPVASDAAYDATRLRLEALEALHPAMIR-- 132 Query: 70 DPNGPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----- 122 + P+ +G + +L +V H++P SL ++ +D+R F+ R+ R + Sbjct: 133 -EDSPIGAVGAKPAAWSALPQVEHAVPMRSLGNCFDDDDVRAFVARVTRALGPPERFDDD 191 Query: 123 -DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LS 178 + F EPKIDG ++RY G V AA RGDG GEDV+ I IP P + Sbjct: 192 ARAPLRFCAEPKIDGASASLRYVDGVLVVAASRGDGEVGEDVTRQIGGIPGAPTTLTGRA 251 Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR-----LNPTDIT 233 + P +E+RGEV+I+ +DF ALN A G + + RNAA+G +RR + D Sbjct: 252 GDWPATLEIRGEVFIADDDFAALNARREARGMPTFKSARNAAAGAMRRLEPPSRDGADAG 311 Query: 234 RYLNFFVHGLGKTSE----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM- 288 RYL F +G G+ + Q L + LG + + + Sbjct: 312 RYLRFLAYGWGEVKPQTELLPWSSQRAFLASLPALGLSPVPTLGPITDDVAALVAGSHAA 371 Query: 289 -KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347 + R++L Y +DG+VYKVD+ + Q+ LG +R+PRW +HKFA + A T L +D+Q+G Sbjct: 372 LERDRASLGYRVDGVVYKVDDVASQRILGADSRAPRWATAHKFAAETAVTTLRAVDVQVG 431 Query: 348 RTGILTPVARLE-PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRA 406 RTG LTPVA L+ PV +GGA +T ATLHN + + + +R+G RV+V+RA Sbjct: 432 RTGALTPVATLDPPVALGGATVTRATLHNFEDVAR-----------KGLRLGARVVVERA 480 Query: 407 GEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV------------------------- 441 G+VIP+VV ++ A + P+ CP C S V Sbjct: 481 GDVIPRVVRVVAEGEEEGA-VVATPTRCPACGSAVSKTPLAASVKCPKKRLSSPYESGDA 539 Query: 442 -------VRDLNP-------KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 V D + + A RCTGG C AQ LER+ HF SRDA ++ GL Sbjct: 540 ASSSFAAVDDESEDATSSPSSSSSSAAVLRCTGGWRCPAQALERVAHFASRDALDVRGLA 599 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS--------------------------T 521 ++Q+ A I PAD+FT++ R + T Sbjct: 600 RKQIADLLD----AGVIASPADLFTMRARFEHLGVDPDASGEDDDARGDGGGVAVPEFWT 655 Query: 522 TKIENILGFGDVSVTNLYDSINK-RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580 G S L+D++++ + L RFI+SLGI VG A+ L++ Y + F Sbjct: 656 YASGKDEGKLKRSAKKLFDALDETAAGVPLHRFIYSLGIPQVGLTTAKLLSRKYRTLDAF 715 Query: 581 AQEINNIIAHNNDDWL---------SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 A ++ + +G ++A I EF+ N+ V+ +L+ Sbjct: 716 RDAAEEAAAAKAAASADAAASTEAPAMTDIDGIGPVVAATIGEFWSERANVNVVDDMLRN 775 Query: 632 VSP---------------SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + + + +V TG + + R +A + V G Sbjct: 776 GVVVSDDASPPDASDASDASNAAAASATGPLTGYAVVVTGAVPGMTREEAFDAVAAAGGS 835 Query: 677 VSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722 +S KT +++VG+ G K E A+ GV +++ E FL +L Sbjct: 836 PQKAVSGKTHVLVVGEGAGRRKAEAAEARGVAVIDAEAFLRVLAGEE 882 >gi|288925794|ref|ZP_06419725.1| DNA ligase [Prevotella buccae D17] gi|288337449|gb|EFC75804.1| DNA ligase [Prevotella buccae D17] Length = 654 Score = 346 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 160/703 (22%), Positives = 280/703 (39%), Gaps = 64/703 (9%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + + ++ D YY ++ D E+DAL R + + P+ P K+ Sbjct: 1 MRQFVERLNAASDAYYNGQPELMTDYEWDALFDRLRQLEEETGE----TLPDSPTAKVSA 56 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + K H P LSL K E+L K+ L K+DG + Sbjct: 57 DDVKG-QKEEHEFPALSLAKTKRPEELVKWAE------------GRPIWLSWKLDGLTLV 103 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 Y+ G+ RG+GH G +++ +AI +P + +RGE IS DF Sbjct: 104 ATYDGGRLTKVVTRGNGHIGTNITHLAQAINGLP--ARIKSAGHTVIRGEAVISYEDFER 161 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259 N + YANPRN ASG L + + R++ + L T E M Sbjct: 162 FN----MESDEEYANPRNLASGSLTLKDVNEIKQRHIRWIPFTLVYTDEEIDAWGKRMDW 217 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEM--KSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 PV + T + + K PY +DGLV D+ + Sbjct: 218 LEANGFKPVERELIANPTLEEVETVIARWTEKVTHRINPYPVDGLVISYDDTAYAATGAV 277 Query: 318 RARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 R ++ K+ ++ A T L ++ T ++PVA PV + G + A+L N Sbjct: 278 TGHHATRAGLAFKWQDEAAETELDHVEWS-CATNTISPVAVFRPVELEGTTVKRASLCNI 336 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 + L G G R+ V +A ++IPKV+ +I F P CP+ Sbjct: 337 SECRRLGIGGS----------GTRLSVIKANKIIPKVIKVI-----ETVGEFDIPGKCPV 381 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + +++ CT + Q + + S++A NI+G+ +Q L F Sbjct: 382 CCAPT--EISISGMSDTETLHCTNDACPAKQLKKFTRFV-SKEAMNIDGISEQTLAKFIN 438 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + AD++ L+ Q+ ++ + GFG+ S N+ S+ K R+ R +F+ Sbjct: 439 ----LGWVGEYADLYHLREHQR----ELAGLEGFGERSAANIMASVEKSRDAEAHRLLFA 490 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 L I GA++ + L Y + ++ +P +G + + + + Sbjct: 491 LSIPLCGADVCKRLLSAYPLADLLSTA------RTVENLDHFAHIPGIGPEKSASFINWN 544 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGA 675 ++ N V+ LL E+ S E ++ V TG + + R++ + Y+ G Sbjct: 545 RSQANQQLVDHLLCEIRVS-QVSEAPQGNKCAGLTFVITGDVYHFKNRNELKSYIESEGG 603 Query: 676 VVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLF 716 V+ +S T +I D + K +KA+ LG++I++E+ F+ Sbjct: 604 KVAGSVSGATSFLINNDVKSTSGKNKKAKLLGIEIISEDDFIS 646 >gi|85713360|ref|ZP_01044373.1| NAD-dependent DNA ligase [Idiomarina baltica OS145] gi|85692818|gb|EAQ30803.1| NAD-dependent DNA ligase [Idiomarina baltica OS145] Length = 449 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 185/471 (39%), Positives = 270/471 (57%), Gaps = 28/471 (5%) Query: 12 LSIEQ-ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 +S + + LEQ+++ ++ YY+ +P I DSEYD L R + P+L Sbjct: 1 MSRSSTVEQRMRELEQQLTRYNKEYYELDEPTIPDSEYDKLFRELQTLEANNPELK---S 57 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P K+G + + VTH +P LSL+ ++ E+ F RI + + F Sbjct: 58 QHSPTEKVGSKPLDAFTSVTHELPMLSLDNAFSSEEFSAFAERIQQRVDSSV--AWAFCC 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 EPK+DG ++I YE G+ V AA RGDG+SGED++A ++ I +P LS + PE +EVRGE Sbjct: 116 EPKLDGLAVSILYENGQLVRAATRGDGYSGEDITANVKTIKNVPLQLSDDAPERLEVRGE 175 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLG----K 245 V++ + F ND K +ANPRNAA+G LR+L+ R L+F+ + LG + Sbjct: 176 VFMMTDAFERFNDNARKRDEKVFANPRNAAAGSLRQLDSRITAKRPLHFYAYSLGVVSEQ 235 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 E A YE LQ++ G P+N+ V++ + +YY M R L Y+IDG+VYK Sbjct: 236 DQEQLADSHYERLQQLSAWGLPINDEVKRVESVEACETYYQAMLEKRDRLRYEIDGIVYK 295 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD +Q +LG AR+PRW I+ KF ++ TR+ +D Q+GRTG +TPVARLEPV++GG Sbjct: 296 VDSIRMQNELGFVARAPRWAIARKFPAQEQLTRITGVDFQVGRTGAITPVARLEPVSVGG 355 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++NATLHN D + L + +GD V ++RAG+VIP+VV ++ +ER DA Sbjct: 356 VTVSNATLHNADEVARL-----------GVMIGDTVSIRRAGDVIPQVVSVLESERPEDA 404 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 Q FPS CP+C S V R A RC+GGL C+AQ+ E +KHF Sbjct: 405 QAIEFPSHCPVCDSEVERIEGE------AVARCSGGLICAAQRKEAIKHFA 449 >gi|196234150|ref|ZP_03132983.1| DNA ligase, NAD-dependent [Chthoniobacter flavus Ellin428] gi|196221801|gb|EDY16338.1| DNA ligase, NAD-dependent [Chthoniobacter flavus Ellin428] Length = 658 Score = 342 bits (878), Expect = 1e-91, Method: Composition-based stats. Identities = 205/665 (30%), Positives = 317/665 (47%), Gaps = 87/665 (13%) Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 + + +EPK+DG +++ YE G F A RGDG G++++ ++ + +IP L Sbjct: 3 PGEQLEWLVEPKVDGLAVSLLYENGVFTRGATRGDGERGDEITDNLKTLRSIPLRLHGKG 62 Query: 182 -PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 PE++EVRGEVY+ F + +EMIA G +P+AN RN A+G L++L+P R L Sbjct: 63 APEVLEVRGEVYLPVAGFQRIREEMIAAGEEPFANARNTAAGTLKQLDPALVAKRPLEIV 122 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 ++GLG+ S Q +L+ M+ G R +T ++ +E+ SIR ++ Sbjct: 123 LYGLGEISVDPPPTQAALLEWMKAFGLRTPKFTRVCHTAEEVMKAIDELDSIRDGFGFET 182 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG V K++ ++++G +R+P+W + K+ +QA T L I IQ+GRTG+LTPVA L Sbjct: 183 DGAVIKLNSIEQRERVGYHSRAPKWAKAWKYVSEQAETVLESITIQVGRTGVLTPVAELR 242 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G+ I+ ATLHNED IK +DIR+GD VL+++AGEVIP VV +++ Sbjct: 243 PVFLRGSTISRATLHNEDEIKR-----------KDIRIGDTVLIEKAGEVIPAVVKVVLE 291 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R AQPF FP CP+C S+ RD N A C + C AQ RL++F R Sbjct: 292 KRPSSAQPFPFPHECPVCHSQAKRDPN------FAVWVC-ENVNCPAQLTRRLEYFAKRG 344 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL--GFGDVSVTN 537 A +I+GLG D + +R P D+F L+ Q + + FG+ + T Sbjct: 345 ALDIDGLGGIVADKLVERS----LVRDPLDLFELKLEQLATLNLGTDDEPRVFGEKNATK 400 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI------------- 584 + ++I + + L R++ +L I VG E A LAK++ S + Sbjct: 401 VTEAIKRAKTQPLARWLHALAIPEVGEETAHDLAKHHPSLEAVRDSAMLRDVVALDRLHG 460 Query: 585 ---------NNIIAHNNDDWLSLIRVPLVGDIIAQA-------IVEFYQNPRNI------ 622 + L ++IA+A + + P Sbjct: 461 EAEESNPRGKRNKDKTELEKQKLASRH--AEVIAEANAAGRRLLEAGFAAPAKKKSATDA 518 Query: 623 ------------------------CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 ++ L G K V TGTL Sbjct: 519 DVVTVVGPVVAQAALHWFAGESGHETLKRLHHLHIAPKGATPGAGDQAFAGKTFVLTGTL 578 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +K+ R+ A E + LG VS+ +SRKT ++ G GSKLE AQ LGV +++E+QFL +L Sbjct: 579 EKMGRNAAAEKIRALGGNVSSSVSRKTSYVVAGPGAGSKLEDAQSLGVTVLSEDQFLKML 638 Query: 719 QQYNT 723 Sbjct: 639 ADSGA 643 >gi|302526819|ref|ZP_07279161.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4] gi|302435714|gb|EFL07530.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4] Length = 663 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 202/711 (28%), Positives = 322/711 (45%), Gaps = 77/711 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 R+ + L +I D YY+ P + D+EYDA++ + A P+LA DPN PL Sbjct: 2 DVRERIQELADQIVALRDAYYR-GSPAVADAEYDAIEDELRGLIEASPELA--PDPN-PL 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +++GG L + HS P LSLEK E + F R + PK+D Sbjct: 58 DQVGGPAVLH-APIRHSRPMLSLEKATKPEQVEAFFDR---------FPGQAVVVMPKLD 107 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + YE G+ A RGDG +G+DV+ +RA+ P +EVRGE + + Sbjct: 108 GLSLALVYEDGRLARAVTRGDGTTGDDVTMLVRALTDGVPHQVSA-PGRVEVRGEAVMLR 166 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254 + F A N A KP NPRNAA+G LR +P R L FF L Sbjct: 167 STFAAYN---TAHPDKPLINPRNAAAGTLRAKDPAAVAERRLRFFAFDLDTEPGSAETDL 223 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 L + +R+ + ++ R+ L YDIDG V ++ + + Sbjct: 224 GSGLLALGF----TAADMRRCADAASAQAVITAIEQQRNDLDYDIDGAVLRLADRAAYAA 279 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 G R+ SPR +++KFA ++ +T L D+ +G+TG + PVA LEPV +GG +T ATL Sbjct: 280 AGTRSSSPRGALAYKFAAEEKTTVLSDVVWDVGKTGKIAPVAWLEPVFVGGTTVTRATLA 339 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI-IVNERHPDAQPFSFPSF 433 N++ I+ R I++GD VLV+RAG+VIP V + ++R + PS Sbjct: 340 NQEVIR-----------ARGIKIGDTVLVRRAGDVIPFVAGVLDESKRTGAEREIVPPST 388 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C+ + N + ++C AQ + RL H+ SR A +I+ +G ++ Sbjct: 389 CPSCEQPLTEQGNSRE-------LFCTNVSCPAQTVRRLIHWASRAAADIDAIGGVWIER 441 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + A + P+D + L + ++ G+VS T + +SI+ R + L R Sbjct: 442 LAE----AGILEHPSDFYRLTKE------RLLEFDRIGEVSATRMIESIDASRQVGLRRA 491 Query: 554 IFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 + L I A L + + S + L+ V +G +A ++ Sbjct: 492 LIGLAIPMASEGTAARLCRAGFASLEAVLDA----------GVDGLVEVEDIGPKVAASL 541 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTL------QKI 661 VE R +E L + E + +E K +V TG + +K+ Sbjct: 542 VEHLT--RLRPELERLRERGVSLDVLEEDLPPAVVAGAPLEGKTVVVTGAISDPRSGEKV 599 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNE 711 R Q GA ++ +S TD++I G + G SKL KA++LGV+++++ Sbjct: 600 PRPTFQRLCETAGATTASSVSASTDLLITGADVGASKLTKAEKLGVEVVDQ 650 >gi|307565636|ref|ZP_07628114.1| NAD-dependent DNA ligase domain protein [Prevotella amnii CRIS 21A-A] gi|307345668|gb|EFN91027.1| NAD-dependent DNA ligase domain protein [Prevotella amnii CRIS 21A-A] Length = 676 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 165/726 (22%), Positives = 291/726 (40%), Gaps = 72/726 (9%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E RK + L ++ D YY I+ D E+DA I P+ P Sbjct: 3 ENKRKRMEELVLCLNNASDAYYNGKGEIMTDFEWDAAFDELKKIEKE----LGIILPSSP 58 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 N + + K H P LSL K + E L K+ + L K+ Sbjct: 59 TNNVSADNITG-KKEEHEYPALSLAKTKSEEVLVKWAA------------NRPIWLSWKL 105 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG + + Y++GK RG+GH G +++ AI I ++N E + +RGE IS Sbjct: 106 DGLTLVVTYDEGKLTKVVTRGNGHIGTNITHLASAIKGIL--PTINTKEHLVIRGEAVIS 163 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKG 253 DF N + YANPRN ASG L + + +R+L + L Sbjct: 164 YADFEIFN----MESEEEYANPRNLASGSLTLKDINEVKSRHLQWKPFTLVHCDRTIISW 219 Query: 254 QYEMLQK------MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 M F ++ + + + PY +DGLV D Sbjct: 220 GERMSFLDSLGFNTVEREFIAIPSIKNIEDVIAAWTQRVTDSARKDKQPYPVDGLVITYD 279 Query: 308 EFSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + R ++ K+ ++ T L I+ + ++PVA PV I G Sbjct: 280 DTDYAATGSVTGHHATRAGLAFKWQDESMETELKFIEWSCATST-ISPVAVFAPVEIEGT 338 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ A+L N + L G +++V +A ++IPKV+ + Sbjct: 339 IVKRASLCNISECERLGIGDA----------GTKIMVIKANKIIPKVICVSKRI-----G 383 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F PS CP+CQ N K+G CT + Q ++L FVS++ NI+GL Sbjct: 384 SFLIPSVCPVCQCPTEIVENEKSGTRT--LHCTNHYCPAKQL-KKLARFVSKEGVNIDGL 440 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 +Q + F ++ +DIF + +++ I GFG S NL+ +I K R Sbjct: 441 SEQTMQKFIN----LGWVKEYSDIFQ----LKKKEKELKQIDGFGTKSCENLFSAIEKSR 492 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN-----NDDWLS---- 597 + ++ +++L I +G ++ L Y S + + N+ + Sbjct: 493 IVEAKQLLYALSIPLIGKDVCNRLLSTY-SLEELISMSRPTTIASQQLLFNEAYADTETI 551 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657 + +G + + V + ++ N ++ LL+E++ E S + V TG Sbjct: 552 FSTIAGIGPEKSTSFVRWMRDENNYTQLQHLLQELTIKQTTTEIKGKS-CKGLTFVITGD 610 Query: 658 LQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQF 714 + + R++ + Y+ G V+ +S+ T+ +I ++ +K +KA++L + I++E+ F Sbjct: 611 VYHYKNRNELKAYIESEGGKVTGSVSKNTNYLINNDTESISNKNKKAKELNIPIISEDDF 670 Query: 715 LFLLQQ 720 + L + Sbjct: 671 ISLFNK 676 >gi|182434930|ref|YP_001822649.1| putative NAD-dependent DNA ligase [Streptomyces griseus subsp. griseus NBRC 13350] gi|254778149|sp|B1VUC2|DNLJ1_STRGG RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 1 gi|178463446|dbj|BAG17966.1| putative NAD-dependent DNA ligase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 719 Score = 342 bits (876), Expect = 2e-91, Method: Composition-based stats. Identities = 195/721 (27%), Positives = 313/721 (43%), Gaps = 94/721 (13%) Query: 39 SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98 + + D YD L R A P+ + + P K+ G + V H++P LSL Sbjct: 42 GESALDDDAYDRLARGIAAYEADHPEEVLA---DSPTGKVAGGAAVG--DVPHTVPMLSL 96 Query: 99 EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158 + +++ E + + R + +++EPK+DG + RY G+F RGDG Sbjct: 97 DNVFSAEQFVTWTASLERRIGRPV---TAWSVEPKLDGLAVAARYRDGRFERLITRGDGT 153 Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218 +GEDVS A+ +P L+ + IEVRGE+ ++ F N G P+ANPRN Sbjct: 154 AGEDVSHAAGAVVGLPERLAEPV--TIEVRGEILMTNEQFAQGNAIRTEHGGAPFANPRN 211 Query: 219 AASGILRRLNPTDITRYLNFFVHGLGKTSE------IFAKGQYEMLQKMRCLGFPVNNGV 272 A+G LR + F L + E+L + LG G Sbjct: 212 GAAGTLRAKDRAYRVETTFFAYGALPLPDSGELGEALAELPHSEVLAYVAGLGVHTAAGT 271 Query: 273 RQANTF----HGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 A + + + + ++R+ LP+ IDG+V K D + Q++ G R+PRW +++ Sbjct: 272 AVAPLRATTVEEVQARVDGIGALRAALPFGIDGIVIKADLAADQQEAGSGTRAPRWAVAY 331 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388 K + TRLL ++ +GRTGI+ P A LEPV I G+ + ATLHN I Sbjct: 332 KLPAVEKITRLLAVEWNVGRTGIIAPRAVLEPVEIDGSTVGYATLHNPADITR------- 384 Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448 RD+R+GD+V+V +AG++IP++ +V+ R D P +FP CP C S + Sbjct: 385 ----RDLRLGDQVMVYKAGDIIPRIEAPVVHLRTGDETPIAFPESCPQCGSEIDASEQ-- 438 Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508 RCT G C + + + + RD +IEGLG ++ A + A Sbjct: 439 ------RWRCTRGRDC--RLVASVSYAAGRDQLDIEGLGSTRVVQLVD----AGLVADFA 486 Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 D+FTL+R Q + G+ S NL +I R L R +LG+R G ++R Sbjct: 487 DLFTLRREQL------LALDRMGETSTDNLLAAIETARTRPLSRVFCALGVRGTGRSMSR 540 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 +A+++ + D SL RV +G A A+V + L Sbjct: 541 RIARHFATMDRIVAA----------DAESLQRVDGIGKEKAAAVVAELVELA--PLIGKL 588 Query: 629 LKEVSPSIGR---------------------------HEKNVSSEIENKKLVFTGT---- 657 + + + +V TG Sbjct: 589 VAAGVSMTEPGATPPPDPGTEEAAAPATADAGAPGGDAATGSALPLAGMTVVVTGAMSGA 648 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L+K+ R++ E + + G S+ +SR+T +++ G+ GSK KA+ LGV+I E+F L Sbjct: 649 LEKLSRNQMNELIERAGGKSSSSVSRRTTLLVAGEKAGSKRAKAEDLGVRIAVPEEFAEL 708 Query: 718 L 718 + Sbjct: 709 V 709 >gi|309805867|ref|ZP_07699902.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 03V1-b] gi|308167776|gb|EFO69920.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 03V1-b] Length = 567 Score = 341 bits (873), Expect = 4e-91, Method: Composition-based stats. Identities = 184/601 (30%), Positives = 300/601 (49%), Gaps = 44/601 (7%) Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + + +E KIDG +++ Y+ GK V A+ RG+GH GEDV+A I IP+ L I I Sbjct: 6 VDYNVELKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKI--DI 63 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245 EVRGE Y+ K F LN E G +ANPRNAA+G LR+L+ + Sbjct: 64 EVRGECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWV 123 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 Q++ + M LGF N + ++ + + + ++ + RS L Y IDG+V K Sbjct: 124 NPPETITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLK 183 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ +LQ +LG + PRW I++KF ++ T + +I +GRTG++TP A ++PVN+ G Sbjct: 184 VDDLALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAG 243 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++ A LHN D ++ +DIR+GD VL+ +AG++IP++ +++N+R + Sbjct: 244 TVVSRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQAS 292 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ P CP C +V + A RC + C AQ E + HF SR A NI G Sbjct: 293 LPYEIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVG 345 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG + + + AD++ L Q + F D S+ NL ++I Sbjct: 346 LGPKIVRQLI----ALHLVNDIADLYFLSAAQL------AKLDHFKDKSIQNLLNAIENS 395 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + S+E +F LGI HVGA+ AR +A+ + + L+++ +G Sbjct: 396 KQNSVELLLFGLGIDHVGAKAARLIAQKFHDLNTIREC----------SIADLMQIDTIG 445 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKI 661 IA+++V++++ ++ L + + + K +V TG L Sbjct: 446 QAIAESMVKYFEQQSVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKEKNVVLTGKLAHY 505 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R + +T LGA V + +S+ TD +I GD GSK +AQQL + ++ E++ + L Sbjct: 506 SRADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVIAKLNSQ 565 Query: 722 N 722 Sbjct: 566 K 566 >gi|283769205|ref|ZP_06342109.1| NAD-dependent DNA ligase domain protein [Bulleidia extructa W1219] gi|283104181|gb|EFC05560.1| NAD-dependent DNA ligase domain protein [Bulleidia extructa W1219] Length = 656 Score = 339 bits (870), Expect = 9e-91, Method: Composition-based stats. Identities = 162/711 (22%), Positives = 294/711 (41%), Gaps = 66/711 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + +L Q+++ + YY + I+ D E+D L A+ P+ P K Sbjct: 4 KERMLALIQQLNEASNAYYNGQREILSDQEWDRLFDELKALEEQ----TGLILPDSPTQK 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 + + + K H P LSL K ++ +L K+ + K+DG Sbjct: 60 VSADEIVG-QKEIHEFPALSLAKTKSVNELVKWAD------------GHPIWMSWKLDGL 106 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YEKGK RGDGH G +++ + + IP + P + VRGE IS D Sbjct: 107 TLVVTYEKGKLEKVVTRGDGHVGTNITHLVDGLFGIP--KEIRYPGRLIVRGEAIISYVD 164 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 F + YANPRN ASG L +++ R ++F L + Sbjct: 165 FEQYV----RETGENYANPRNLASGSLSLKKASEVLERKIHFRPFTLVHCDQEINSWGDR 220 Query: 257 MLQKMRCLG--FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 M + + + V K + PY +DGLV ++ Sbjct: 221 MGFLTKLGFDVVEHTFIEKPSEESVQKVLKQFSEKVKQRKNPYPVDGLVIVYEDIQYASS 280 Query: 315 LGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 R ++ K+A++ ++L+ ++ + +TPVA EPV + G + A+L Sbjct: 281 GTVTGHHATRSGLAFKWADQSKLSKLIRVEWSNAIST-ITPVAVFEPVELEGTTVQRASL 339 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 N + L G V V +A +IPKV+ + P+ Sbjct: 340 ANISECERLGIGSG----------GTEVEVIKANMIIPKVISV-----VKKVGNLEIPTL 384 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C ++ + C A+ L++ FVS+ +I+G+ + L Sbjct: 385 CPVCGKPTKIHVSEISETKT---LKCSNAHCPAKALKKYVRFVSKQGMDIDGISEATLST 441 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F I+ DI+ L+ R++ IEN+ GFG S N+ S+ K + + ++F Sbjct: 442 FIAQ----GWIQNYGDIYRLKDRKE----AIENLDGFGLKSAENILTSLEKAQVVRGDKF 493 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F+L I VG ++A L + Y + I + + +G ++A V Sbjct: 494 LFALSIPLVGIDVASRLLRVYP-------LMELITLAKEKELDFFSHIDGIGPQKSEAFV 546 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQ 672 + ++ N +E LL ++ H+ + S ++ V TG + + R++ +E+++ Sbjct: 547 RWMKDLNNQKEMEDLLSFLTIE-DLHKVSHDSVLDGLTFVVTGEVHYFKNRNELKEWISA 605 Query: 673 LGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFL-FLLQQ 720 G V++++S TD +I D + SK KA+ LG+ I++E F+ + + Sbjct: 606 RGGKVASVVSGSTDFLINNDIHSTSSKNAKAKSLGIPILSEADFMTRFIDK 656 >gi|254233094|ref|ZP_04926421.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis C] gi|124602153|gb|EAY61163.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis C] Length = 495 Score = 339 bits (869), Expect = 9e-91, Method: Composition-based stats. Identities = 156/523 (29%), Positives = 253/523 (48%), Gaps = 31/523 (5%) Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 ++ G+ P+ANPRN+A+G LR+ +P R L HGLG ++ + Sbjct: 1 SSLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPATLHQAYLAL 60 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 R G PV+ A G+ + R + ++IDG+V KVDE +LQ++LG +R+ Sbjct: 61 RAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGSTSRA 120 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW I++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ + ATLHN IK Sbjct: 121 PRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQATLHNASEIKR 180 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 + + +GD V++++AG+VIP+V+ +V R + F P+ CP C S + Sbjct: 181 -----------KGVLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPTTCPECGSPL 229 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 + + A RC C Q ER+ H SR+ +IE LG + +++ Sbjct: 230 APE-----KEGDADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYEAGVALLQAK--- 281 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 I ++F L R T G + L +++K + L R + +L IRH Sbjct: 282 -VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVALSIRH 340 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 VG AR+LA + S A L V VG IA A+ E++ + Sbjct: 341 VGPTAARALATEFGSLDAIAAA----------STDQLAAVEGVGPTIAAAVTEWFAVDWH 390 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 V+ + +++V + +V TG+L R A+E + G + + Sbjct: 391 REIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVARGGKAAGSV 450 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 S+KT+ ++ GD+PGSK +KA +LGV I++E+ F LL + Sbjct: 451 SKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLLADGPAS 493 >gi|326775447|ref|ZP_08234712.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1] gi|326655780|gb|EGE40626.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1] Length = 712 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 196/721 (27%), Positives = 315/721 (43%), Gaps = 94/721 (13%) Query: 39 SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98 + + D YD L R A P+ + + P K+ G + V H++P LSL Sbjct: 35 GESALDDDAYDRLARGIAAYEADHPEEVLA---DSPTGKVAGGAAVG--DVPHTVPMLSL 89 Query: 99 EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158 + +++ E + + R + +++EPK+DG + RY G+F RGDG Sbjct: 90 DNVFSAEQFVTWTASLERRIGRPV---TAWSVEPKLDGLAVAARYRDGRFERLITRGDGT 146 Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218 +GEDVS A+ +P L+ + IEVRGE+ ++ F N G P+ANPRN Sbjct: 147 AGEDVSHAAGAVVGLPERLAEPV--TIEVRGEILMTNEQFAQGNAIRTEYGGAPFANPRN 204 Query: 219 AASGILRRLNPTDITRYLNFFVHGLGKTS------EIFAKGQYEMLQKMRCLGFPVNNGV 272 A+G LR + F L + E+L + LG G Sbjct: 205 GAAGTLRAKDRAYRVETTFFAYGALPLPDSGELGETLAELPHSEVLAYVAGLGVHTAAGT 264 Query: 273 RQAN----TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 A T + + + + ++R+ LP+ IDG+V K D + Q++ G R+PRW +++ Sbjct: 265 AVAPLRATTVEEVQARVDGIGALRAALPFGIDGIVIKADLAADQQEAGSGTRAPRWAVAY 324 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388 K + TRLL ++ +GRTGI+ P A LEPV I G+ + ATLHN I Sbjct: 325 KLPAVEKITRLLAVEWNVGRTGIIAPRAVLEPVEIDGSTVGYATLHNPADITR------- 377 Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448 RD+R+GD+V+V +AG++IP++ +V+ R D P +FP CP C S + Sbjct: 378 ----RDLRLGDQVMVYKAGDIIPRIEAPVVHLRTGDETPIAFPESCPQCGSEIDASEQ-- 431 Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508 RCT G C + + + + RD +IEGLG ++ A + A Sbjct: 432 ------RWRCTRGRDC--RLVASVSYAAGRDQLDIEGLGSTRVVQLVD----AGLVADFA 479 Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 D+FTL+R Q + + G+ S NL +I R L R +LG+R G ++R Sbjct: 480 DLFTLRREQ------LLALDRMGETSTDNLLAAIETARTRPLSRVFCALGVRGTGRSMSR 533 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 +A+++ + D SL RV +G A A+V + L Sbjct: 534 RIARHFATMDRIVAA----------DAESLQRVDGIGKEKAAAVVAELVELA--PLIGKL 581 Query: 629 LKEVSPSIGR---------------------------HEKNVSSEIENKKLVFT----GT 657 + + + +V T G Sbjct: 582 VVAGVSMTEPGATPPPDPGTEEAAAPATADAGAPGGDAATGSALPLAGMTVVVTGAMSGA 641 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L+K+ R++ E + + G S+ +SR+T +++ G+ GSK KA+ LGV+I E+F L Sbjct: 642 LEKLSRNQMNELIERAGGKSSSSVSRRTTLLVAGEKAGSKRAKAEDLGVRIAVPEEFAEL 701 Query: 718 L 718 + Sbjct: 702 V 702 >gi|262199205|ref|YP_003270414.1| DNA ligase, NAD-dependent [Haliangium ochraceum DSM 14365] gi|262082552|gb|ACY18521.1| DNA ligase, NAD-dependent [Haliangium ochraceum DSM 14365] Length = 751 Score = 339 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 183/598 (30%), Positives = 295/598 (49%), Gaps = 38/598 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + AR E L E+S HD YY ++PII D EYD L ++ AI P Sbjct: 1 MSDDTARAEYLGLVDELSDHDRRYYVEAEPIISDVEYDKLLKKLRAIEEEHPAWVVEW-- 58 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFT 129 P ++G S KV +P LSL+ ++ +L F R+ R D ++ + Sbjct: 59 -SPTQRVGHSPISSFPKVVREVPMLSLDNTYDESELADFHQRVLRGLGLSGDEAGAVNYV 117 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 +EPKIDG + + YE+G F RGDG GED+S +R + +P L + + VRG Sbjct: 118 VEPKIDGIGVELSYERGAFRLGTTRGDGRVGEDISQNLRTLRGLPLRLREEV--DLIVRG 175 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E ++++ DF ALN+ G +P+ NPRN +G L++L+P + + E Sbjct: 176 EAFMTRADFTALNEARAEAGEEPFKNPRNTVAGSLKQLDPRLVAERPMQVILYEVVGGER 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 FA+ +E+L ++R LG P + +A+++ + R+ LP+D+DGLV KV+ F Sbjct: 236 FAREHFEVLARLRELGLPTSEHNSRADSWAALKREVAAWAERRAELPFDVDGLVIKVNSF 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + LG ++ PRW I++KF +Q +T + D+++ +GRTG +TPVA L PV + G + Sbjct: 296 DQRDALGTTSKFPRWAIAYKFPAQQVTTVIEDLEVNVGRTGAVTPVAMLTPVEVSGTTVQ 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN D I+ L I DRVL+++AGE+IP+V+ ++ Q F Sbjct: 356 RASLHNWDQIERL-----------GIGPKDRVLLEKAGEIIPQVIAVVER---ASEQVFP 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 PS CP C ++++ A C LAC Q L L+ F R NI+GLG++ Sbjct: 402 RPSTCPSCGHGLIQEPG------RVALLCPNRLACPRQLLASLEFFAGRGQMNIDGLGEK 455 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI- 548 + + AD+F L + + + FG+ S NL D+I + R+ Sbjct: 456 VAQALLDT----GLVSNVADLFALSKEDLLT------LERFGEQSAQNLVDAIARARDSA 505 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + R + +LG+ H+G AR++A +Y +++ L + G+ Sbjct: 506 TFSRLLAALGVAHIGGVAARAIAAHYPDMDALLALVDSTAPSAEAAALEVTAEDGAGE 563 Score = 147 bits (371), Expect = 6e-33, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 5/125 (4%) Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFT 655 L + VG I+A ++ F ++P + LL+E V+P E + K+LV T Sbjct: 627 LGEIEGVGRIMASSLESFLRDPEAREVL-RLLRERGVNPREPATEVTGEGVLSGKRLVIT 685 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQF 714 GTL + R ++ + G V+ +S++T ++ G + GS KL A++ GV +++E Sbjct: 686 GTLSR-PRSDIKKAIEAAGGKVTGSVSKQTAYLVAGADTGSAKLASAEKYGVPVIDEAAL 744 Query: 715 LFLLQ 719 LL Sbjct: 745 DALLA 749 >gi|256377071|ref|YP_003100731.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827] gi|255921374|gb|ACU36885.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827] Length = 674 Score = 337 bits (865), Expect = 3e-90, Method: Composition-based stats. Identities = 198/720 (27%), Positives = 326/720 (45%), Gaps = 77/720 (10%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-GPL 75 A + + L + D YY+ P++ D+EYDA + ++ A P+L P+ PL Sbjct: 11 AEERIRDLADRVVSLRDAYYR-GSPLVADAEYDATEDELRSLIAANPEL----TPDPNPL 65 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +++G L V H+ P LSLEK E + F+ R + PK+D Sbjct: 66 DQVGAPAVLH-APVRHARPMLSLEKATQPEQVAAFLDR---------FPGQPVVVMPKLD 115 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +++ YE G + A RGDG +G+DV+ +RA+ P +EVRGE + + Sbjct: 116 GLSLSLVYEGGALLRAVTRGDGTTGDDVTPLVRALADGVPTRV-PAPGRVEVRGEAVMLR 174 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQ 254 + F A N+ KP NPRNAA+G LR +P R L F L +E A Sbjct: 175 STFTAYNEA---HPDKPLINPRNAAAGTLRAKDPATVAGRRLRFLAFELDTDAEAGAGVG 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 ++ + +R LGF +R A +++ R+ L YD+DG V ++ + Sbjct: 232 ADLEEGLRALGF-TPADMRHAADAEAAQRVITGIETGRADLDYDLDGAVLRLADRRAYAA 290 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 G R+ SPR ++ KFA ++ +T L+D+ +G+TG + PVA LEPV +GG +T ATL Sbjct: 291 AGTRSNSPRGALAFKFAAEEKTTLLVDVVWDVGKTGKVVPVAHLEPVFVGGTTVTRATLA 350 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI-IVNERHPDAQPFSFPSF 433 N++ IK R + VGD VLV+RAG+VIP V + +R + + PS Sbjct: 351 NQEVIK-----------ARGVMVGDTVLVRRAGDVIPFVAGVLDAAKRTGEEREIVPPST 399 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C + N + ++C+AQ + RL H+ SR A +I+ +G ++ Sbjct: 400 CPSCDQPLTEQGNSRE-------LFCTNVSCAAQTVRRLIHWASRAAADIDAIGPVWIER 452 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F + A + P+D + L + Q + G+ S T + +SI R + L R Sbjct: 453 FAE----AGLLEHPSDFYLLTKEQ------LLEFERVGETSATRMIESIAASRAVGLRRA 502 Query: 554 IFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 + + A L + + S + A L+ V +G +A ++ Sbjct: 503 LIGFAVPMASEGTATRLCRAGFGSLEEVADAGE----------ERLVEVEDIGPKVAASL 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTL------QKI 661 E R + L + R E + + K +V TG + +K+ Sbjct: 553 TEHLA--RLRPELTRLRQRGVSLDVRDEDLPPVVASDAPLAGKTVVITGAISDPRSGEKV 610 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQ-FLFLLQ 719 R Q + GA ++ +S TD++I G G+ K KA++LGV ++++ + + L+ Sbjct: 611 ARPAFQRLCEKAGATTASSVSANTDMLITGAEVGAGKTAKAEKLGVAVVDQGEIWAQLIA 670 >gi|295135415|ref|YP_003586091.1| DNA ligase [Zunongwangia profunda SM-A87] gi|294983430|gb|ADF53895.1| DNA ligase [Zunongwangia profunda SM-A87] Length = 812 Score = 337 bits (863), Expect = 5e-90, Method: Composition-based stats. Identities = 170/592 (28%), Positives = 281/592 (47%), Gaps = 47/592 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 ++ +L +E+ +H+ YY P I D ++D + + P+ DPN P Sbjct: 2 DIENKIYTLREELQHHNYQYYVLDNPEISDYDFDMKLKELQELEEKHPEF---NDPNSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + + V H SL ++ E+L+ + TRI + D I +T E K D Sbjct: 59 QRVGGAVTKNFTTVVHDYRMYSLSNSYSKEELQDWETRIRKLV----DGDIKYTCELKYD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +++ Y+KG+ V A RGDG G+DV+ ++ I ++P L + PE +RGE+ + Sbjct: 115 GASMSLMYDKGQLVQAVTRGDGFQGDDVTNNVKTIRSVPLKLRGDYPEKFHIRGEIVLPF 174 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 F LN E + G +PYANPRN ASG L+ + ++ + + + Q+ Sbjct: 175 EGFAKLNAERVENGEEPYANPRNTASGSLKLQDSAEVAKRPLDCLLYNIAGENLPISSQF 234 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L+K R GF V N ++SY N R LPY+ DG+V KV++F Q++L Sbjct: 235 ESLEKARDWGFKVPAESELKNNIEEVLSYINYWDIHRHDLPYETDGVVVKVNDFGQQEEL 294 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW +++KF +Q +T+L I Q+GRTG +TPVA LEPV + G ++ A+LHN Sbjct: 295 GYTAKSPRWAMAYKFKAEQETTKLHKITYQVGRTGAITPVANLEPVQLAGTIVKRASLHN 354 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I L DIR GD+V V++ GE+IPK+V + +R PD++P ++ +CP Sbjct: 355 ADQIAKL-----------DIREGDKVFVEKGGEIIPKIVGVDFKQRDPDSEPTTYAIYCP 403 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + + R A H C + C Q + R++HFVSR A +I+GLGK ++ + Sbjct: 404 ECGTELQRKEGE------AQHFCPNYVGCPPQIIGRMEHFVSRKAMDIDGLGKGTIEILY 457 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + I +D + L + + G L + + + Sbjct: 458 YN----GIINNYSDFYYLTYDDIIGQERWLDNEEAGIKKSGELQVKLGQA------IYAL 507 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 S G + + + + + ++ + + + Sbjct: 508 SQGWGSITRADSEKIGNEIVYLEEIFSL-------------NIAEISGIDEK 546 Score = 186 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 65/412 (15%), Positives = 156/412 (37%), Gaps = 26/412 (6%) Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 + P ++ Q R+ + +E + G + + + Sbjct: 417 QHFCPNYVGC----PPQIIGRMEHFVSRKAMDIDGLGKGTIEILYYNGIINNYSDFYYLT 472 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA----QPFSFPSF 433 Y + + I+ + V + G+ I + + D+ + Sbjct: 473 YDDIIGQERWLDNEEAGIKKSGELQV-KLGQAIYALSQGWGSITRADSEKIGNEIVYLEE 531 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS-----RDAFNIEGLGK 488 + ++ K K T + ++ VS F + Sbjct: 532 IFSLNIAEISGIDEKKFKRFLMELNTAIQRVAISDYTSMEDCVSVNLLIDLKFPDHQENQ 591 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ +R + + + + + + N+ +S+ + + Sbjct: 592 PAKEALKNADYIDELLRNESFQHYPKFDDFITKISDRSRISIQKKTTENILNSVEESKKR 651 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + ++ +F+LGIR VG AR +A+++ + + LI++ VG+ + Sbjct: 652 TFDKVLFALGIRDVGEVSARKIAEHFGNIDKLMAA----------NTEELIQLRDVGERV 701 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A +I+EF+ + NI V+ L ++ ++ S+++E V +GT I R + ++ Sbjct: 702 AASIIEFFTDEENIDIVKRLREKDLQFEMEEKETSSNKLEGLSFVVSGTFS-ISRSELKK 760 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ + G + LS+ T+ +IVG+ G SK KA++ G+ +++EE+F +++ Sbjct: 761 HIEENGGKNLSSLSKSTNYLIVGEKMGPSKKVKAEKEGIAMISEEEFFKMIE 812 >gi|332755049|gb|EGJ85414.1| DNA ligase, NAD-dependent [Shigella flexneri 4343-70] Length = 421 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 162/456 (35%), Positives = 261/456 (57%), Gaps = 40/456 (8%) Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 PV++ V + ++++Y++++ R TL +DIDG+V KV+ Q+QLG AR+PRW Sbjct: 1 MPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARAPRWA 60 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++NATLHN D I+ L Sbjct: 61 VAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERL--- 117 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 +R+GD+V+++RAG+VIP+VV+++++ER D + FP+ CP+C S V R Sbjct: 118 --------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVE 169 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 A RCTGGL C AQ+ E LKHFVSR A +++G+G + +D + E + Sbjct: 170 GE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKE----YVH 219 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 PAD+F L K+ + G N+ +++ K + + RF+++LGIR VG Sbjct: 220 TPADLFKLTA------GKLTGLERMGPKLAQNVVNALEKAKETTFARFLYALGIREVGEA 273 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 A LA Y+ + + L +VP VG ++A + F+ N + Sbjct: 274 TAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVASHVHNFFAEESNRNVI 323 Query: 626 EALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 LL E I + + + S K +V TG+L ++ R A+ + +LGA V+ +S Sbjct: 324 SELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVS 383 Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 384 KKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 419 >gi|303237245|ref|ZP_07323815.1| NAD-dependent DNA ligase domain protein [Prevotella disiens FB035-09AN] gi|302482632|gb|EFL45657.1| NAD-dependent DNA ligase domain protein [Prevotella disiens FB035-09AN] Length = 655 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 160/701 (22%), Positives = 282/701 (40%), Gaps = 62/701 (8%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L +++ + YY I+ D E+DA + + P+ P + Sbjct: 9 MRELVDKLNEASNTYYNGQNEIMSDHEWDAAFDELKHLEEE----TGTILPDSPTANVSA 64 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + K H LSL K DL K+ + K+DG + Sbjct: 65 DSIAG-EKEEHEFAALSLAKTKKTTDLLKWAE------------EKPIWISWKLDGLTLV 111 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + Y+KGK RG+GH G +++ AI I ++ + +RGE IS +DF Sbjct: 112 VTYDKGKLSKVVTRGNGHIGTNITHLAPAIAGIL--PTITDKGHVVIRGEAIISYSDFNV 169 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259 N + YANPRN ASG L N R+L++ L + E F +M Sbjct: 170 FN----METGEEYANPRNLASGSLTLKNIETLKERHLHWIPFTLVYSDEPFNSWGAQMDY 225 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 + V + I + ++ Y +DGLV D+ + Sbjct: 226 LTKLGFKTVEHEAINVPNIENIDATIENWTHKLNSFDYPVDGLVICFDDIAYATTGSVTG 285 Query: 320 RS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 R + K+ ++ A T L I+ + ++PVA +PV + G + A+L N Sbjct: 286 HHATRGGYAFKWQDESAETELEYIEWSCAAST-ISPVAVFKPVELEGTTVKRASLCNISE 344 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 + L GK G ++ V +A ++IPKV++++ S P+ CP+C+ Sbjct: 345 CERLGIGGK----------GTKISVIKANKIIPKVIEVLQT-----EGKLSIPTECPVCK 389 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S ++ + CT + + + ++ S++ NI+GL +Q L F Sbjct: 390 SPT--EVVVSSSSETKTLHCTNPNCAAKELKKFVRFV-SKEGVNIDGLSEQTLQKFIN-- 444 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I ADIF L ++ + GFGD SV NL +I+K + + + +FSL Sbjct: 445 --LGWINQYADIFHLHEH----ANDLKIMEGFGDKSVLNLLRAIDKAKIVEAKNLLFSLS 498 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I VG ++ L Y + + D + +G + + + + Q Sbjct: 499 IPLVGQDVCSRLLSAYPFNELIMKARLAT------DSAEFSNIAGIGPEKSASFIAWIQA 552 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVV 677 NI + LL E+ + ++ + + V TG + + R + + Y+ G V Sbjct: 553 EENIKRLNNLLVELKITQPVVKE-IGTRCNGLTFVVTGDVHHYKNRSELKAYIESQGGKV 611 Query: 678 SAILSRKTDIIIVGD-NPGS-KLEKAQQLGVKIMNEEQFLF 716 + +S+ T+ +I D N S K +KA+Q + I++E++F+ Sbjct: 612 TGSVSKSTNYLINNDVNSTSEKNKKARQFEIPIISEDEFVE 652 >gi|67809897|gb|AAY81980.1| NAD-dependent DNA ligase [Wolbachia pipientis] Length = 552 Score = 333 bits (854), Expect = 5e-89, Method: Composition-based stats. Identities = 222/590 (37%), Positives = 323/590 (54%), Gaps = 41/590 (6%) Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + KV H P LSLE ++ + + KF+++I RF + + I EPKIDG Sbjct: 1 VGAPPDERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFLIE---DKIEILCEPKIDGL 57 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + YE G+FV AA RGDG GEDV+ + I P+ L +EVRGE+YIS +D Sbjct: 58 SFSAIYEDGRFVKAATRGDGFVGEDVTHNVATIKGFPKFLQGV-QGRLEVRGEIYISNSD 116 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 FL LN+ +ANPRNAA+G L++L+ + K Q E+ Sbjct: 117 FLKLNEN------DEFANPRNAAAGSLKQLDANITASRP--LRYFAYSLIGGAEKSQSEV 168 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L K+ LGF VN ++ G++ +Y + YDIDG+VYKV++ LQ +LG Sbjct: 169 LNKLEALGFCVNEHQSLTSSLDGMLKFYTKSILSLYL-DYDIDGIVYKVNDLVLQNRLGN 227 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PR +++KF+ A T+L I IQ+GRTG+LTPVA L PVNIGG L++ A+LHN+D Sbjct: 228 THKAPRSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVNIGGVLVSRASLHNQD 287 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 IK +DIR GD V +KRAG+VIP++V++ + R P+ F FP CP C Sbjct: 288 EIKR-----------KDIREGDIVTIKRAGDVIPQIVEVSRDSRLPNTPEFVFPEVCPEC 336 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S+V + AA RC AC AQ +E+LKHFVS+DAF+I GLG +Q++FF+ Sbjct: 337 GSKVRQVEGE------AAVRCPEEFACKAQIIEKLKHFVSKDAFDIVGLGDKQIEFFYD- 389 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I+ DIFTL+ R +E G+G S+ +L ++I RR I+L+RFIFSL Sbjct: 390 ---LGLIKQIPDIFTLEERL--DEFNLEEQSGWGKKSIAHLLNAIQSRRVITLDRFIFSL 444 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR +G A LA YY+SY N+ + + + D L+ + +G +A+++ F+ Sbjct: 445 GIRFIGQVAAELLADYYVSYDNWYNSMIEL----SSDNTELVGIDGIGKKVAESLESFFS 500 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 NI + L + + S K +VFTG L + R +A+ Sbjct: 501 KEHNIKMLNDLTACLQILPVSSNSSNSVLNN-KIIVFTGKLLAMSRGEAK 549 >gi|291448912|ref|ZP_06588302.1| DNA ligase [Streptomyces roseosporus NRRL 15998] gi|291351859|gb|EFE78763.1| DNA ligase [Streptomyces roseosporus NRRL 15998] Length = 710 Score = 333 bits (853), Expect = 7e-89, Method: Composition-based stats. Identities = 196/720 (27%), Positives = 312/720 (43%), Gaps = 93/720 (12%) Query: 39 SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98 + + D YD L R A P+ + P K+ G + V H++P LSL Sbjct: 34 GESGLDDDAYDRLARGIAAYEADHPEEVLAA---SPTGKVAGGAAVG--DVPHTVPMLSL 88 Query: 99 EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158 + +++ E + + R + +++EPK+DG + RY G+F RGDG Sbjct: 89 DNVFSAEQFATWTASLERRIGRPV---TAWSVEPKLDGLAVAARYRDGRFERLITRGDGT 145 Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218 +GEDVS A+ +P L+ + IEVRGE+ ++ + F N G P+ANPRN Sbjct: 146 AGEDVSHAAGAVVGLPERLAEPV--TIEVRGEILMTNDQFDQGNAIRTEHGGAPFANPRN 203 Query: 219 AASGILRRLNPTDITRYLNFFVHGLGKTS------EIFAKGQYEMLQKMRCLGFPVNNGV 272 A+G LR + F L + E+L + LG G Sbjct: 204 GAAGTLRAKDRAYRVETTFFAYGALPLPDSGELGETLAELPHSEILSYVAGLGVHTAAGT 263 Query: 273 RQAN----TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 A T + + + + +R+ LP+ IDG+V K D + Q++ G R+PRW I++ Sbjct: 264 DVAPVLAATVEEVQARVDAIGPLRAALPFGIDGIVIKADLAADQREAGSGTRAPRWAIAY 323 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388 K + TRL+ ++ +GRTGI+ P A LEPV I G+ + ATLHN I Sbjct: 324 KLPAVEKITRLVSVEWNVGRTGIIAPRAVLEPVEIDGSTVGYATLHNPADITR------- 376 Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448 RD+R+GD+V+V +AG++IP++ +V+ R D P FP CP C S + Sbjct: 377 ----RDLRLGDQVMVYKAGDIIPRIEAPVVHLRTGDETPIDFPESCPQCGSAIDTSEQ-- 430 Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508 RCT G C + + + + RD +IEGLG ++ A + A Sbjct: 431 ------RWRCTRGRNC--RLVASVSYAAGRDQLDIEGLGATRVVQLVD----AGLVADFA 478 Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 D+FTL+R Q + G+ S NL +I R L R +LG+R G ++R Sbjct: 479 DLFTLEREQL------LALDRMGETSTDNLLAAIETARTRPLSRVFCALGVRGTGRSMSR 532 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 +A+Y+ + D +L RV +G A A+V + + L Sbjct: 533 RIARYFATMDRIVAA----------DVETLQRVDGIGKEKAAAVVA--ELAELAPLIAKL 580 Query: 629 LKEVSPSIGRHEKNVSS--------------------------EIENKKLVFTGT----L 658 + + +V TG L Sbjct: 581 VAAGVNMTEPGATPPPEPGTEEEAAAAGADAEAGGEGGTGPTLPLAGMTVVVTGAMTGAL 640 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +K+ R++ E + + G S+ +S++T +++ GD GSK KA+ LGV+I E+F L+ Sbjct: 641 EKLSRNQMNELIERAGGKSSSSVSKRTSLLVAGDKAGSKRTKAEDLGVRIAVPEEFAELV 700 >gi|239945456|ref|ZP_04697393.1| putative NAD-dependent DNA ligase [Streptomyces roseosporus NRRL 15998] gi|239991920|ref|ZP_04712584.1| putative NAD-dependent DNA ligase [Streptomyces roseosporus NRRL 11379] Length = 702 Score = 333 bits (853), Expect = 7e-89, Method: Composition-based stats. Identities = 196/720 (27%), Positives = 312/720 (43%), Gaps = 93/720 (12%) Query: 39 SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98 + + D YD L R A P+ + P K+ G + V H++P LSL Sbjct: 26 GESGLDDDAYDRLARGIAAYEADHPEEVLAA---SPTGKVAGGAAVG--DVPHTVPMLSL 80 Query: 99 EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158 + +++ E + + R + +++EPK+DG + RY G+F RGDG Sbjct: 81 DNVFSAEQFATWTASLERRIGRPV---TAWSVEPKLDGLAVAARYRDGRFERLITRGDGT 137 Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218 +GEDVS A+ +P L+ + IEVRGE+ ++ + F N G P+ANPRN Sbjct: 138 AGEDVSHAAGAVVGLPERLAEPV--TIEVRGEILMTNDQFDQGNAIRTEHGGAPFANPRN 195 Query: 219 AASGILRRLNPTDITRYLNFFVHGLGKTS------EIFAKGQYEMLQKMRCLGFPVNNGV 272 A+G LR + F L + E+L + LG G Sbjct: 196 GAAGTLRAKDRAYRVETTFFAYGALPLPDSGELGETLAELPHSEILSYVAGLGVHTAAGT 255 Query: 273 RQAN----TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 A T + + + + +R+ LP+ IDG+V K D + Q++ G R+PRW I++ Sbjct: 256 DVAPVLAATVEEVQARVDAIGPLRAALPFGIDGIVIKADLAADQREAGSGTRAPRWAIAY 315 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388 K + TRL+ ++ +GRTGI+ P A LEPV I G+ + ATLHN I Sbjct: 316 KLPAVEKITRLVSVEWNVGRTGIIAPRAVLEPVEIDGSTVGYATLHNPADITR------- 368 Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448 RD+R+GD+V+V +AG++IP++ +V+ R D P FP CP C S + Sbjct: 369 ----RDLRLGDQVMVYKAGDIIPRIEAPVVHLRTGDETPIDFPESCPQCGSAIDTSEQ-- 422 Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508 RCT G C + + + + RD +IEGLG ++ A + A Sbjct: 423 ------RWRCTRGRNC--RLVASVSYAAGRDQLDIEGLGATRVVQLVD----AGLVADFA 470 Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 D+FTL+R Q + G+ S NL +I R L R +LG+R G ++R Sbjct: 471 DLFTLEREQL------LALDRMGETSTDNLLAAIETARTRPLSRVFCALGVRGTGRSMSR 524 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 +A+Y+ + D +L RV +G A A+V + + L Sbjct: 525 RIARYFATMDRIVAA----------DVETLQRVDGIGKEKAAAVVA--ELAELAPLIAKL 572 Query: 629 LKEVSPSIGRHEKNVSS--------------------------EIENKKLVFTGT----L 658 + + +V TG L Sbjct: 573 VAAGVNMTEPGATPPPEPGTEEEAAAAGADAEAGGEGGTGPTLPLAGMTVVVTGAMTGAL 632 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +K+ R++ E + + G S+ +S++T +++ GD GSK KA+ LGV+I E+F L+ Sbjct: 633 EKLSRNQMNELIERAGGKSSSSVSKRTSLLVAGDKAGSKRTKAEDLGVRIAVPEEFAELV 692 >gi|13235527|emb|CAC33654.1| DNA ligase [Rickettsia montanensis] Length = 488 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 196/508 (38%), Positives = 310/508 (61%), Gaps = 23/508 (4%) Query: 213 YANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L +FV+ G T + A Q ++L K++ GF +N Sbjct: 1 FANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTEQNLASSQDQLLTKLKECGFNINEI 60 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 + A++ I ++Y +K+ R LPY+IDG+VYK+++F+LQ ++G ARSPR+ +HKF Sbjct: 61 SKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLNDFALQNRMGFIARSPRFATAHKFP 120 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 T+LL I +Q+GRTG LTPVA LEP+ IGG ++ ATLHN I Sbjct: 121 AIIGRTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSRATLHNFQEIAR---------- 170 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +D+R+ D V ++RAG+VIPK++ + ++R D F P FC C S++ Sbjct: 171 -KDVRIKDYVFLQRAGDVIPKIMGVDFDKRPSDTATFDTPLFCLSCNSKLHYMPE----- 224 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 RC GL C AQ ER++HFVS++A +IEGLG++Q++F + I P DIF Sbjct: 225 -DIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQIEFLIDN----GLISNPLDIF 279 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 L+ + +S K+EN+ G+G SV NL+ +I K +N+SL RFI++LGIR +G + A+ LA Sbjct: 280 FLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKNVSLPRFIYALGIRRIGEQNAKLLA 339 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 K + SY NF ++ + + D + L + +GD I I++F+ NI ++ L Sbjct: 340 KEFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDKILVDIIDFFDVKENIELIKKLGAI 399 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ + + SS + +K +VFTG+L I R +A+ +LGA V+A +S TD+++ G Sbjct: 400 LNIEDYKETREQSS-LTDKIVVFTGSLPTISRAEAKATAEKLGAKVAAGVSSNTDLVVAG 458 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + GSKL+KA++L +KI++EE++L L++ Sbjct: 459 VDAGSKLKKAKELNIKIIDEEEWLTLIK 486 >gi|253797891|ref|YP_003030892.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 1435] gi|253319394|gb|ACT23997.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 1435] Length = 474 Score = 330 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 144/494 (29%), Positives = 233/494 (47%), Gaps = 30/494 (6%) Query: 231 DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290 R L HGLG ++ +R G PV+ A G+ + Sbjct: 9 TARRRLRMICHGLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGE 68 Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350 R + ++IDG+V KVDE +LQ++LG +R+PRW I++K+ ++A T+LLDI + +GRTG Sbjct: 69 HRHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTG 128 Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410 +TP A + PV + G+ + ATLHN IK + + +GD V++++AG+VI Sbjct: 129 RITPFAFMTPVKVAGSTVGQATLHNASEIKR-----------KGVLIGDTVVIRKAGDVI 177 Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 P+V+ +V R + F P+ CP C S + + + A RC C Q E Sbjct: 178 PEVLGPVVELRDGSEREFIMPTTCPECGSPLAPE-----KEGDADIRCPNARGCPGQLRE 232 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530 R+ H SR+ +IE LG + +++ I ++F L R T G Sbjct: 233 RVFHVASRNGLDIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGE 288 Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 + L +++K + L R + +L IRHVG AR+LA + S A Sbjct: 289 LSANGKRLLVNLDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAIAAA------- 341 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650 L V VG IA A+ E++ + V+ + +++V + Sbjct: 342 ---STDQLAAVEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGL 398 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TG+L R A+E + G + +S+KT+ ++ GD+PGSK +KA +LGV I++ Sbjct: 399 TIVVTGSLTGFSRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILD 458 Query: 711 EEQFLFLLQQYNTT 724 E+ F LL + Sbjct: 459 EDGFRRLLADGPAS 472 >gi|227494609|ref|ZP_03924925.1| DNA ligase (NAD(+)) [Actinomyces coleocanis DSM 15436] gi|226832343|gb|EEH64726.1| DNA ligase (NAD(+)) [Actinomyces coleocanis DSM 15436] Length = 806 Score = 330 bits (846), Expect = 5e-88, Method: Composition-based stats. Identities = 154/505 (30%), Positives = 248/505 (49%), Gaps = 25/505 (4%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 + P++ +A + L EI+ YY P D+EYD L + + Sbjct: 19 STEKTPVDTPVPAEATAKWRDLVTEINQMRFDYYNLDAPTASDAEYDVLFEELKDLEAKW 78 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P L P+ P +GG + V H IP LSL+ ++++E +++ R Sbjct: 79 PMLV---TPDSPTQTVGGSAVNTFAPVAHRIPMLSLDDVFSVEATHQWLDRCLTGLGM-- 133 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 N + E K+DG ++I YE G AA RGDG GEDV+A + I +PR L+ + P Sbjct: 134 -NQVEILAEVKVDGLAVSILYENGLLTRAATRGDGRVGEDVTANVLTISNVPRQLTGDFP 192 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFF 239 +EVRGE+Y DFL N++ G K + N RNAA+G LR+ +P + + + Sbjct: 193 ASVEVRGEIYFPIADFLDFNEQRALRGEKTFVNARNAAAGSLRQKDPAETAKRPLAMVCH 252 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 G+ + + Q+ ++++ G PV+ R +T I R+ L ++I Sbjct: 253 GIGIYEGGQSQPDSQHAWYEQLKAWGLPVSEYTRLISTHAEIDEVIEYFGKHRADLSHEI 312 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V+KVD Q LG +R+PRW ++KF + TRLLDI Q+GRTG +TP +E Sbjct: 313 DGMVFKVDSRQYQAALGTTSRAPRWAAAYKFPPTEVHTRLLDIRTQVGRTGRVTPYGVME 372 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 V + G+ +++ATLHN+D +K + + +GD V++++AG+VIP+++ + + Sbjct: 373 KVLVAGSHVSSATLHNQDEVKR-----------KGVLIGDMVILRKAGDVIPEILGPVES 421 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R + F PS CP C + + + RC +C AQ +R+ R Sbjct: 422 LRDGSERAFVMPSHCPSCGAPLA-----PAKEGDVDLRCPNQASCPAQITQRISFMGGRS 476 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSI 504 AF+IEGLG + + E F + Sbjct: 477 AFDIEGLGDESALALTQPEVNRFEV 501 Score = 193 bits (490), Expect = 9e-47, Method: Composition-based stats. Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 11/216 (5%) Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564 R ++ RR ++ +T + D + K + L R + +L IRHVG Sbjct: 595 RQIRAFWSTGRRLKSGEWAKGQEPK-PTQDLTKMLDQLEKAKQQPLWRVLNALSIRHVGP 653 Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 +++LA ++ S Q L V VG IIA+A+V ++Q + Sbjct: 654 TASQALADHFRSLDALQQA----------SVAELAAVEGVGQIIAEAVVAWFQVDWHKHI 703 Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684 V + + + +V +GT+ R A+ + GA S+ +S+K Sbjct: 704 VNTWAASGVRMEDEATEELPQTLAGLTIVVSGTMPGYDRESAKAAIIARGAKASSSVSKK 763 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 T +++ G GSK KA+ LGV +++E +F LL + Sbjct: 764 TSLVVAGPGAGSKATKAETLGVPLVDETKFQLLLDE 799 >gi|13235515|emb|CAC33719.1| DNA ligase [Rickettsia rickettsii] Length = 488 Score = 330 bits (845), Expect = 6e-88, Method: Composition-based stats. Identities = 194/508 (38%), Positives = 311/508 (61%), Gaps = 23/508 (4%) Query: 213 YANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L +FV+ G T + A Q ++L K++ GF +N Sbjct: 1 FANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTEQNLASSQDQLLTKLKECGFNINEI 60 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 + A++ I ++Y +K+ R LPY+IDG+VYK+++F+LQ ++G AR+PR+ +HKF Sbjct: 61 SKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLNDFALQNRMGFIARNPRFATAHKFP 120 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 T+LL I +Q+GRTG LTPVA LEP+ IGG ++ ATLHN I Sbjct: 121 AIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSRATLHNFQEIAR---------- 170 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +D+R+ D V ++RAG+VIPK++ + ++R D + F P FC C S++ Sbjct: 171 -KDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTETFDTPLFCLSCNSKLHY------TP 223 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 RC GL C AQ ER++HFVS++A +IEGLG++Q++F I P DIF Sbjct: 224 EDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQVEFLIDK----GLISNPLDIF 279 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 L+ + +S K+EN+ G+G SV NL+ +I K +N+SL RFI++LGIRH+G + A+ LA Sbjct: 280 FLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKNVSLPRFIYALGIRHIGEQNAKLLA 339 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 + + SY NF ++ + + D + L + +GD I I++F+ NI ++ L + Sbjct: 340 REFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDKILVDIIDFFDVKENIELIKKLGEI 399 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ + + SS + +K +VFTG+L I R +A+ +LGA V+ +S TD+++ G Sbjct: 400 LNIEDYKETREQSS-LTDKIVVFTGSLPTISRAEAKATAEKLGAKVAVGVSSNTDLVVAG 458 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + GSKL+KA++L +KI++EE++L L++ Sbjct: 459 VDAGSKLKKAKELNIKIIDEEEWLTLIK 486 >gi|328869954|gb|EGG18329.1| BRCT domain-containing protein [Dictyostelium fasciculatum] Length = 842 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 187/812 (23%), Positives = 329/812 (40%), Gaps = 140/812 (17%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S Q ++ +L +I+ ++D YY S+ +I D EYD L ++ + + + Sbjct: 67 SRNQLVDDIKTLRNDINKYNDLYYNKSETVISDFEYDMLFKKLETLEQLYESQYSGSTDL 126 Query: 73 G--------PLNKIGGEMNLS----LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 P+N++G + + KV H + LSL+ ++ EDL F +R+ K Sbjct: 127 SASGSGSTTPINQVGAPIATAGNERGEKVKHIVRMLSLDNTYSKEDLMAFESRVLGNLSK 186 Query: 121 KDDN--------SIFFTLEPKIDGTMITIRYEK-GKFVYAALRGDGHSGEDVSACIRAIP 171 ++ F+ E K DG ++I Y+ GK A RGDG GE ++ Sbjct: 187 SSSGISNNNNNNNLEFSCELKYDGIGLSIVYDSFGKLERIATRGDGDIGEIITTNALYYI 246 Query: 172 TIPRVLSLN-------------IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218 + IEVRGEV K+ LN Y N RN Sbjct: 247 PSLPKQISTSHLVNNNNNLTLGQNDKIEVRGEVVFKKSQLEKLNTWRSMNDEVEYKNTRN 306 Query: 219 AASGILRRLNPTDITR-------YLNFFVHGL----------------GKTSEIFAKGQY 255 SG LR + +F + L + Sbjct: 307 IVSGKLRSILDPKQEELDNPFGIEFDFISYQLFIHQNQNNQINNNQNNNNQNNNNTNTHN 366 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS------TLPYDIDGLVYKVDEF 309 + + +GF ++ + S E + +DIDG+V KV+ Sbjct: 367 NNIILLEKIGFNIDRNAILVGSLSQRDSSRLEEFIKMWSGEKRESFDWDIDGIVVKVNSL 426 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q LG+ RSPRW +++KF + T + I +QIGR+G +TPVA +EPV+I G ++ Sbjct: 427 EKQAILGQANRSPRWAVAYKFGARSMPTVVKSIQLQIGRSGKVTPVAEVEPVDIHGVTVS 486 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI------------- 416 ATL+N +I+ L +R G RVLV+RAG+VIPK++ Sbjct: 487 RATLNNLLFIQKL-----------GVRTGSRVLVERAGDVIPKIIQSLDAKEPMTKKELL 535 Query: 417 IVNERHPDAQPFSFPSFCPI-CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475 + +R P + CP S + + + C Q+L+ + + Sbjct: 536 DMFDRCPTSATDGDSLKCPCALGSPLSQPDGYQD-------YYCFESNCPNQRLQSISWY 588 Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 VS+D N+ G+G Q+ + I+ D+++L ++ ++ + GF D V Sbjct: 589 VSKDGMNMTGIGPSQIKVLLEY----GLIQDIGDLYSLADKKD----QLLKLRGFSDKKV 640 Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 N+ +S+ K + +L +LGI VG + LA+ + + ++ A Sbjct: 641 ANMIESVEKSKKENLAHLFCALGIPGVGKASCKWLAERFTTIESLATA----------SL 690 Query: 596 LSLIRVPLVGDIIAQAIVEFYQ--NPRNICAVEALLKEV---------------SPSIGR 638 + V +G I+ I ++ + ++ +E LL + + S + Sbjct: 691 QDIEVVGDLGPNISTNIYYYFHPTDQQSKDGIEKLLSIIQKHNVYDSQSQNRNQNRSDEK 750 Query: 639 HEKNV-----SSEIENKKLVFTGTLQKIQRHKAQEYVT-QLGAVVSAILSRKTDIIIVGD 692 + SS ++K +V TG + + R + Q+ V G ++ + + + T+ +++G Sbjct: 751 KNSSTTTLQQSSIFKDKNVVVTGKFKNMTREEIQDIVQHNFGGIIQSQIRKNTNYLLMGQ 810 Query: 693 NPG-SKLEKAQQLGVKIMNEEQF---LFLLQQ 720 + G SK+ KA+Q G I+ E +F L+Q+ Sbjct: 811 DAGSSKITKAEQNGTTIITENEFDDLYKLIQK 842 >gi|4235374|gb|AAD13190.1| NAD-dependent DNA ligase [Thermus thermophilus] Length = 557 Score = 327 bits (839), Expect = 3e-87, Method: Composition-based stats. Identities = 191/605 (31%), Positives = 307/605 (50%), Gaps = 54/605 (8%) Query: 61 AFPDLARSEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119 FP+L P+ P ++G + V H SL+ +N ++L+ F RI R Sbjct: 1 RFPELK---SPDSPTEQVGARPLEATFRPVRHPTRMYSLDNAFNFDELKAFEERIERALG 57 Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179 ++ +T+E K+DG + + YE G VY A RGDG GE+V+ + IPTIPR L Sbjct: 58 RE--GPFAYTVEHKVDGLSVNLYYEDGVLVYGATRGDGEVGEEVTQNLLTIPTIPRRLKG 115 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YL 236 PE +EVRGEVY+ FL LN+E+ G + + NPRNAA+G LR+ +P + Sbjct: 116 V-PERLEVRGEVYMPVEAFLRLNEELEERGARIFKNPRNAAAGSLRQKDPRITAKRGLRA 174 Query: 237 NFFVHGLG--KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 F+ GLG + Q+ +L ++ FPV +G +A G+ + Y + R Sbjct: 175 TFYALGLGLEEVEREGVATQFALLHWLKEKSFPVEHGYARAVGAEGVEAVYQDWLKKRRA 234 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 LP++ DG+V K+DE +L ++LG AR+PR+ I++KF ++ TRLLD+ Q+GRTG +TP Sbjct: 235 LPFEADGVVVKLDELALWRELGYTARAPRFAIAYKFPAEEKETRLLDVAFQVGRTGRVTP 294 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 V LEPV + G+ ++ TLHNE YI+ L DIR+GD VLV +AG VIP+V+ Sbjct: 295 VGILEPVFLEGSEVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVL 343 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 ++ R + +P +P CP C R++++ HRC L C A++ E ++H Sbjct: 344 RVLKERRTGEERPIRWPETCPECGHRLLKE--------GKVHRCPNPL-CPAKRFEAIRH 394 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 F SR A +I+GLG++ ++ + ++ AD++ L++ + G+ S Sbjct: 395 FPSRKAMDIQGLGEKLIERLLEK----GLVKDVADLYRLRKEDLVG------LERMGEKS 444 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 NL I + + LER +++LG+ VG +AR+LA + + + + + Sbjct: 445 AQNLLRQIEESKRRGLERLLYALGLPGVGEVLARNLAARFGNMDRLLEASLEELLEVEEV 504 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654 A+AI+E ++P V L + + + ++ V Sbjct: 505 GEL----------TARAILETLKDPAFRDLVRRLKEAGVEMEAK--EKGGEALKGLTFVI 552 Query: 655 TGTLQ 659 TG L Sbjct: 553 TGELS 557 >gi|254994698|ref|ZP_05276888.1| DNA ligase [Anaplasma marginale str. Mississippi] Length = 624 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 221/605 (36%), Positives = 337/605 (55%), Gaps = 46/605 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +EQAR+ L+ L ++ +HD Y+ P + D +YD L + + FPD+++ +D Sbjct: 2 LEQARRRLAGLNAKLRHHDVLYHGLDAPEVTDHQYDLLVQEKKRLLDEFPDISQYDD--- 58 Query: 74 PLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 + +G ++ KV H P LSLE + ++D+ KFITR+ RF + + D+ + + E Sbjct: 59 YADVVGTPKIDSRFPKVQHLEPMLSLENAFTVQDVEKFITRVRRFLELQPDDILELSCEL 118 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG + Y GK A RG+GH GED++ + +P L + PE++EVRGE+Y Sbjct: 119 KMDGMSFSALYHGGKLTRVATRGNGHFGEDITTNAMVLRGLPHQL-DSAPEVLEVRGEIY 177 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + DF L G +ANPRNAA+G +R+LN + + Sbjct: 178 MHHEDFEKLR------GSCNFANPRNAAAGSIRQLNQKIVEERN--LSYVAYSAVNSTFA 229 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E+L+++ GF N V + +++YN + + RS L YDIDG+VYKV+ + Q Sbjct: 230 TQQEILKQLDEWGFHTNKQVLFTDKIEEAIAFYNSVYTTRSALGYDIDGVVYKVNSTNFQ 289 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 K LG +SPRW I+HKF +A T+LLDI +Q+GRTG++TP+A LEP+NIGG +++ A+ Sbjct: 290 KLLGATGKSPRWAIAHKFPSTEARTKLLDITVQVGRTGVVTPIAELEPINIGGVMVSRAS 349 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN + I+ +D+R+GD V+VKRAGEVIP+VVD+ R Q F FPS Sbjct: 350 LHNLNEIER-----------KDVRIGDLVIVKRAGEVIPQVVDVDKTLRSSGTQKFVFPS 398 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S++ R+ A RC L+C AQ LER+KHFVSRD NI GLG +Q++ Sbjct: 399 HCPSCGSKLHREPGE------VALRCVAELSCKAQALERVKHFVSRDGLNIMGLGAKQIE 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 FF I ADIF+L+ + E+ G+G+ SV NL +I + L Sbjct: 453 FFCNH----GLIGSIADIFSLEEKLHGINLDTEH--GWGEKSVANLIAAIRNSATVRLSN 506 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LGIR +G A+ +A++Y SY+N+ Q + + ++ I++ +G Sbjct: 507 FIFALGIRFIGVGAAKLIAEHYRSYKNWHQAMLALTETHDT-----IQIRGLGKK----- 556 Query: 613 VEFYQ 617 +F++ Sbjct: 557 HKFFE 561 >gi|303252067|ref|ZP_07338236.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649049|gb|EFL79236.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 451 Score = 325 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 150/411 (36%), Positives = 244/411 (59%), Gaps = 19/411 (4%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +L +L Q++ ++ Y+ P++ D+EYD L + P+ + + P ++ Sbjct: 16 AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + +VTH IP LSL+ ++ E+L F+ R+ + + ++ F EPK+DG Sbjct: 73 GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 ++I Y G AA RGDG +GED+++ IR I IP ++ N P +EVRGEV++ + Sbjct: 132 VSILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKG 191 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGKTSEIFAKGQ 254 F ALN+ + G K +ANPRNAA+G LR+L+P + N + G+ ++ + Sbjct: 192 FEALNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATH 251 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y ++++ R TL YDIDG V KV++ LQ+Q Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 N D I+ L I +GD V+++RAG+VIP++V +++ R +A Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENA 411 >gi|115379272|ref|ZP_01466385.1| DNA ligase [Stigmatella aurantiaca DW4/3-1] gi|115363713|gb|EAU62835.1| DNA ligase [Stigmatella aurantiaca DW4/3-1] Length = 443 Score = 325 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 156/426 (36%), Positives = 245/426 (57%), Gaps = 27/426 (6%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 +L P++ ++ A L +E+++H+ YY P + D+EYD L R + FP Sbjct: 39 RLPPVD---LKTAETRARDLRRELAHHNHRYYVLDSPEVSDAEYDRLMRELQGLEAQFPA 95 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 LA P+ P ++GGE KV H P LSL ++N E+ +F RI + D Sbjct: 96 LA---TPDSPTQRVGGEAAEKFAKVVHRAPMLSLANVFNDEEFTEFDERIRKVVGPAD-- 150 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP----RVLSLN 180 + + EPK+DG IT+RYE G+F+ A RGDG +GEDV+ +R + +P + Sbjct: 151 -VTYVCEPKLDGLAITLRYENGRFLQGATRGDGTTGEDVTGNLRTVRPLPLELLPEAGMA 209 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +P ++EVRGEV+I K DF LN++ G +ANPRNAA+G LR+L+P +R L+ Sbjct: 210 VPPVLEVRGEVFIRKEDFKKLNEKREEEGEALFANPRNAAAGSLRQLDPKITASRPLSVS 269 Query: 240 VHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 ++ + T L+ ++ LG PVN+ +A G+ + Y R L ++ Sbjct: 270 LYEIVPTEGVPAFDTHTAKLEYLQKLGLPVNHH-ERAQGLEGVRAAYQAALKGRHALKFE 328 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 +DG+V KVD +++LG+ ++SPRW +++KF ++ STR+ I++Q+GRTG LTPVA L Sbjct: 329 VDGMVVKVDSEDQRRRLGQVSKSPRWAVAYKFPPEEESTRVEAIEVQVGRTGALTPVAHL 388 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 +PV +GG ++ ATLHNED ++ +D+R GD V V+RAG+VIP++V ++ Sbjct: 389 KPVKVGGVTVSRATLHNEDELRR-----------KDVRQGDTVFVRRAGDVIPEIVSVVP 437 Query: 419 NERHPD 424 N+R D Sbjct: 438 NQRPAD 443 >gi|28493381|ref|NP_787542.1| DNA ligase [Tropheryma whipplei str. Twist] gi|28476422|gb|AAO44511.1| DNA ligase [Tropheryma whipplei str. Twist] Length = 634 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 173/667 (25%), Positives = 302/667 (45%), Gaps = 73/667 (10%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M R+ +P ++ + + L +I YYQ + ++ D EYDAL+ H Sbjct: 1 MTTRRNMPHPDGDLD---RRIELLTAQIIAARKAYYQENTSLMSDVEYDALEHELKDAEH 57 Query: 61 AFPDLARSEDPNGPLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119 A D N P +G V H P LSL+ +++++ L + + + Sbjct: 58 A----KGFSDRNSPSLTVGIAAQLNLFEPVKHIEPMLSLDNVFSLDQLHSWYEKTKKIC- 112 Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179 + + F E KIDG +++RY G + AA RGDG GED++ + +P+IP + Sbjct: 113 -PEGDQCTFVCELKIDGVGVSLRYANGYLISAATRGDGAIGEDITQNMLYVPSIP--PRI 169 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNF 238 +P I E+RGE +I +++F +N ++ K +ANPRN SG +R P ++F Sbjct: 170 ALPGIFEIRGEAFIKRDEFDRIN-QLSLERSKQFANPRNFVSGCIRTKTPNMRYLESISF 228 Query: 239 FVHGL--------------------GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTF 278 + HG G G + ++ PVN+ R F Sbjct: 229 YAHGFTQVYGYTSGGMNLHSDITASGGVKTEIEHGMFSAYSRLSECKIPVNSYNRLCTNF 288 Query: 279 HGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTR 338 I SY ++ R +PY IDG+V K+D Q LG ++PRW +++KF + TR Sbjct: 289 SEIESYIENIRLNRQCVPYAIDGIVVKIDSLQKQALLGSTTKAPRWAVAYKFPSESTVTR 348 Query: 339 LLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVG 398 LLDI++ +GRTG +TP A L+P+ + G+ ++ ATLHN + + G +D+ +G Sbjct: 349 LLDIEVSVGRTGRVTPYAVLQPIQLDGSEVSRATLHN-----------QKVIGDKDLLIG 397 Query: 399 DRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458 D V +++AG+++P+V+ + +R F PS CP C + ++ + RC Sbjct: 398 DYVRIRKAGDIVPEVLCALPEKRDGSEVLFKMPSLCPSCGAELM-----PSKLGDIDLRC 452 Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQ------QLDFFFKSEDPAFSIRIPADIFT 512 +C Q RL++ SR +I L ++ L F KS + D+ Sbjct: 453 PNMQSCLVQLAGRLEYIGSRGVLDIAYLAEENAYALSHLRKFGKSAEVQLFKITIDDLVA 512 Query: 513 LQRRQQTSTTKIENILGF-------GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 L+ + + G S ++ DSI + + L +F+ +L IRH+G Sbjct: 513 LEFMYKGNMRSPFRKKGDSFPGFEEPTKSAQDMVDSIERAKRSPLWKFLLALNIRHIGPA 572 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 A++LA ++ S ++ L++V +G+ IA ++ +++++P + V Sbjct: 573 SAKALADHFGSIESIINA----------KIDELLKVRSLGETIAISVHDWFRDPWRVELV 622 Query: 626 EALLKEV 632 + Sbjct: 623 NTWRSDG 629 >gi|168334213|ref|ZP_02692416.1| DNA ligase, NAD-dependent [Epulopiscium sp. 'N.t. morphotype B'] Length = 639 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 183/704 (25%), Positives = 320/704 (45%), Gaps = 73/704 (10%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L + + Y Q I+ + EYD L + + N KI Sbjct: 5 ARMKELVTLLDKANFAYEQEDTEIMSNLEYDKLVVELEELEKE----LGIIYGNSVTQKI 60 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G ++ L +H LSL+K I+ L+ F+ + L K+DG Sbjct: 61 GHTVSNELVTKSHDTSILSLDKTKKIDILQNFL------------GNEEGLLSYKLDGLT 108 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + I+Y+ G + A RGDG GEDV+A + +P L + + + +RGE I+ ++F Sbjct: 109 VVIKYDNGNLIEAVTRGDGQVGEDVTANAKTFRNLP--LKIKYKDKLTIRGEAIITNSNF 166 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257 +N V Y NPRN SG +R+L+ + R ++F + + + EM Sbjct: 167 ARIN----MVEDNKYKNPRNLCSGSVRQLDSSVTAKRNIDFICFAV-MKCDKNFVTKKEM 221 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+ ++ GF V + V + + + + DGLV ++ + K LG Sbjct: 222 LKFLKQQGFAVVEAEVVTDKTLKTVVE--KFTANITNKDFQADGLVLSFNDIAYSKSLGV 279 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++ P+ +++K+ + Q T L I+ RTG + PVA V++ G +T+A++HN Sbjct: 280 TSKFPKDSMAYKWKDIQKETILEAIEWNTSRTGKINPVAVFAAVDLEGTTVTHASIHNIS 339 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 ++ L + +GDR++V +A +IP++++ + P + P+ C C Sbjct: 340 MVEEL-----------KLGLGDRIIVYKANMIIPQILENLSQ-----TGPVAIPNVCSKC 383 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 + +T L G C +QL++L HFVSR+A +I+GL + L+ Sbjct: 384 GGNTIIKQEKETKTL-----YCGNPNCLEKQLKQLVHFVSRNAMDIKGLSEAILEKL--- 435 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I ++I+++++ + +I ++ GFG+ S T L SI+K R ++L RF+ +L Sbjct: 436 -----PINDVSEIYSIEKYKD----EIISMRGFGEKSYTKLVKSIDKSRKVALHRFVTAL 486 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI VG E A+ + KY+ +N+ A L + +G +IA+ I ++ Sbjct: 487 GIPQVGVENAKLICKYF---------XDNLDAIRAASEEELHDIEGIGSLIAKEIYRYFN 537 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAV 676 N N ++ LL E + E N SS ++ K TG L R Q+ + Q G Sbjct: 538 NEENKQLIDKLLME--IKFEQKETNSSSSLDGKIFAITGKLNYFENRQALQKKIEQCGGK 595 Query: 677 VSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718 VS +S KT +I + + K KA +L + I++EE F+ +L Sbjct: 596 VSESISSKTSYLINNEINSTSKKNSKAHELSIPIISEEDFVKML 639 >gi|166216282|sp|Q83G99|DNLJ_TROWT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 628 Score = 324 bits (830), Expect = 4e-86, Method: Composition-based stats. Identities = 170/649 (26%), Positives = 295/649 (45%), Gaps = 70/649 (10%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L +I YYQ + ++ D EYDAL+ HA D N P + Sbjct: 10 RRIELLTAQIIAARKAYYQENTSLMSDVEYDALEHELKDAEHA----KGFSDRNSPSLTV 65 Query: 79 G-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 G V H P LSL+ +++++ L + + + + + F E KIDG Sbjct: 66 GIAAQLNLFEPVKHIEPMLSLDNVFSLDQLHSWYEKTKKIC--PEGDQCTFVCELKIDGV 123 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +++RY G + AA RGDG GED++ + +P+IP + +P I E+RGE +I +++ Sbjct: 124 GVSLRYANGYLISAATRGDGAIGEDITQNMLYVPSIP--PRIALPGIFEIRGEAFIKRDE 181 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL------------- 243 F +N ++ K +ANPRN SG +R P ++F+ HG Sbjct: 182 FDRIN-QLSLERSKQFANPRNFVSGCIRTKTPNMRYLESISFYAHGFTQVYGYTSGGMNL 240 Query: 244 -------GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296 G G + ++ PVN+ R F I SY ++ R +P Sbjct: 241 HSDITASGGVKTEIEHGMFSAYSRLSECKIPVNSYNRLCTNFSEIESYIENIRLNRQCVP 300 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 Y IDG+V K+D Q LG ++PRW +++KF + TRLLDI++ +GRTG +TP A Sbjct: 301 YAIDGIVVKIDSLQKQALLGSTTKAPRWAVAYKFPSESTVTRLLDIEVSVGRTGRVTPYA 360 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 L+P+ + G+ ++ ATLHN + + G +D+ +GD V +++AG+++P+V+ Sbjct: 361 VLQPIQLDGSEVSRATLHN-----------QKVIGDKDLLIGDYVRIRKAGDIVPEVLCA 409 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 + +R F PS CP C + ++ + RC +C Q RL++ Sbjct: 410 LPEKRDGSEVLFKMPSLCPSCGAELM-----PSKLGDIDLRCPNMQSCLVQLAGRLEYIG 464 Query: 477 SRDAFNIEGLGKQ------QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530 SR +I L ++ L F KS + D+ L+ + + G Sbjct: 465 SRGVLDIAYLAEENAYALSHLRKFGKSAEVQLFKITIDDLVALEFMYKGNMRSPFRKKGD 524 Query: 531 -------GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583 S ++ DSI + + L +F+ +L IRH+G A++LA ++ S ++ Sbjct: 525 SFPGFEEPTKSAQDMVDSIERAKRSPLWKFLLALNIRHIGPASAKALADHFGSIESIINA 584 Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632 L++V +G+ IA ++ +++++P + V + Sbjct: 585 ----------KIDELLKVRSLGETIAISVHDWFRDPWRVELVNTWRSDG 623 >gi|28572508|ref|NP_789288.1| DNA ligase [Tropheryma whipplei TW08/27] gi|81629879|sp|Q83HX4|DNLJ_TROW8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|28410640|emb|CAD67026.1| DNA ligase [Tropheryma whipplei TW08/27] Length = 628 Score = 324 bits (830), Expect = 4e-86, Method: Composition-based stats. Identities = 170/649 (26%), Positives = 295/649 (45%), Gaps = 70/649 (10%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L +I YYQ + ++ D EYDAL+ HA D N P + Sbjct: 10 RRIELLTAQIIAARKAYYQENTSLMSDVEYDALEHELKDAEHA----KGFSDRNSPSLTV 65 Query: 79 G-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 G V H P LSL+ +++++ L + + + + + F E KIDG Sbjct: 66 GIAAQLNLFEPVKHIEPMLSLDNVFSLDQLHSWYEKTKKIC--PEGDQCTFVCELKIDGV 123 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +++RY G + AA RGDG GED++ + +P+IP + +P I E+RGE +I +++ Sbjct: 124 GVSLRYANGYLISAATRGDGAIGEDITQNMLYVPSIP--PRIALPGIFEIRGEAFIKRDE 181 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL------------- 243 F +N ++ K +ANPRN SG +R P ++F+ HG Sbjct: 182 FDRIN-QLSLERSKQFANPRNFVSGCIRTKTPNMRYLESISFYAHGFTQVYGYTSGGMNL 240 Query: 244 -------GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296 G G + ++ PVN+ R F I SY ++ R +P Sbjct: 241 HSDITASGGVKTEIEHGMFSAYSRLSECKIPVNSYNRLCTNFSEIESYIENIRLNRQCVP 300 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 Y IDG+V K+D Q LG ++PRW +++KF + TRLLDI++ +GRTG +TP A Sbjct: 301 YAIDGIVVKIDSLQKQALLGSTTKAPRWAVAYKFPSESTVTRLLDIEVSVGRTGRVTPYA 360 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 L+P+ + G+ ++ ATLHN + + G +D+ +GD V +++AG+++P+V+ Sbjct: 361 VLQPIQLDGSEVSRATLHN-----------QKVIGDKDLLIGDYVRIRKAGDIVPEVLCA 409 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 + +R F PS CP C + ++ + RC +C Q RL++ Sbjct: 410 LPEKRDGSEVLFKMPSLCPSCGAELM-----PSKLGDIDLRCPNMQSCLVQLAGRLEYIG 464 Query: 477 SRDAFNIEGLGKQ------QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530 SR +I L ++ L F KS + D+ L+ + + G Sbjct: 465 SRGVLDIAYLAEENAYALSHLRKFGKSAEVQLFKITIDDLVALEFMYKGNMRSPFRKKGD 524 Query: 531 -------GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583 S ++ DSI + + L +F+ +L IRH+G A++LA ++ S ++ Sbjct: 525 SFPGFEEPTKSAQDMVDSIERAKRSPLWKFLLALNIRHIGPASAKALADHFGSIESIINA 584 Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632 L++V +G+ IA ++ +++++P + V + Sbjct: 585 ----------KIDELLKVRSLGETIAISVHDWFRDPWRVELVNTWRSDG 623 >gi|149924280|ref|ZP_01912652.1| DNA ligase, NAD-dependent [Plesiocystis pacifica SIR-1] gi|149814860|gb|EDM74426.1| DNA ligase, NAD-dependent [Plesiocystis pacifica SIR-1] Length = 706 Score = 323 bits (828), Expect = 6e-86, Method: Composition-based stats. Identities = 182/756 (24%), Positives = 304/756 (40%), Gaps = 104/756 (13%) Query: 7 IPIEALSIEQARK-----ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 + L + +L I + Y+ P I D YD L + A Sbjct: 13 PDVSGLDTAAIEAGLPSFDADTLAALIRRTNHEYWNLHAPTIPDPVYDRLVEGLRRLDPA 72 Query: 62 FPDL--ARSEDPNGPLNKIGG----EMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRI 114 P L P GP+ + L V H+ LSL+K + EDL + + Sbjct: 73 HPVLDELGEATPEGPVIEADATASIPPAERLGAPVRHTRAMLSLDKCYGPEDLYSWTEKF 132 Query: 115 YRFWQKKDDNSIFFTLEPKIDGTMITIRYE-KGKFVYAALRGDGHSGEDVSACIRAIPTI 173 + PK+DG ++RY+ +GK AA RG+G GED++ + + + Sbjct: 133 ----------EGEVLVMPKMDGVACSLRYDAEGKLFLAATRGNGSEGEDITVNVLEVEDV 182 Query: 174 PRVLSLNIPEI----------IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGI 223 P+ L +EVRGE+++ + F ++ Y+NPRN +G Sbjct: 183 PQQLDPAAFAELPGPDGAAPAVEVRGELFMKLSVFERYKEQ--------YSNPRNLTAGA 234 Query: 224 LRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282 ++ L+F+ + L T + ++ +R LGF V Sbjct: 235 IKHKERGKTKAYTLSFYAYDLQGTELPTEREKFAS---LRALGFAVEECDFVPRGELQAA 291 Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342 + + Y+IDG+VY+ E + Q+++GE PRW +++KF +T L ++ Sbjct: 292 YERWSARRSADEIDYEIDGVVYRASEVAEQRRMGETGHHPRWSMAYKFQGDTGTTTLEEV 351 Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402 + RTG +TPVA +P+ + GA+I A L N ++ L + G + Sbjct: 352 LWSVSRTGTITPVAIFKPIELSGAMIARAGLFNLNHFDEL-----------GLTAGAAIE 400 Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462 V R G VIP V ++ + P CP C S VR + C+ Sbjct: 401 VTRRGGVIPYVERVVTPGAEGETFDI--PKRCPACNSEAVRRK----KRDGEFLYCSKPE 454 Query: 463 ACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT 522 C + +L L+HF +I+G G + + A + PAD +TL+ Sbjct: 455 GCGSARLGELQHFA--KVVDIQGFGPKVVTQAVD----AGLLSSPADFYTLRVEDL---- 504 Query: 523 KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582 E G S NL ++ R I L F+ SLGI H+G + A LA + + Sbjct: 505 --EEFDRLGRRSAENLVAQVDAHRRIELPIFLQSLGIDHLGKQNAVLLANEFRTL----- 557 Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642 +L+ V + D IA A++ + ++ALL+ V+ Sbjct: 558 -----AGVRGVSREALLEVKGIKDAIADALLAGLETRA--ELIDALLEHVTVVDLPERDP 610 Query: 643 VSSE----------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + + K +FTG L+ R +AQE V G V ++ +S+ D ++VG Sbjct: 611 EAEAEAAAAAAEGALGGKTFLFTGALEAFTRKQAQEKVEANGGVPASGVSKSLDYLVVGA 670 Query: 693 NPG---SKLEKAQQL--G---VKIMNEEQFLFLLQQ 720 G SK +KA++L G +K+++E FL ++ + Sbjct: 671 GKGAKSSKQKKAEKLIDGGAALKVISEGDFLAMIGE 706 >gi|162452733|ref|YP_001615100.1| DNA ligase [Sorangium cellulosum 'So ce 56'] gi|190359289|sp|A9F3W3|DNLJ_SORC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|161163315|emb|CAN94620.1| DNA ligase [Sorangium cellulosum 'So ce 56'] Length = 676 Score = 323 bits (828), Expect = 7e-86, Method: Composition-based stats. Identities = 164/725 (22%), Positives = 274/725 (37%), Gaps = 100/725 (13%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L + I + YY P I D+ +DAL+ A+ A P LA + Sbjct: 26 KARIEELAERIEKYRASYY-AGHPEISDAAFDALEDELRALDPAHPVLA----------R 74 Query: 78 IGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF--------- 127 +G K H IP SL K+ + ++L ++ R K Sbjct: 75 VGSASLITEWEKARHEIPMGSLNKVVSEDELLGWVARCDEILVKDGHGDGGTGAAPPAPG 134 Query: 128 ---------FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 F E K+DG I + Y+ GK V A RGDG GE ++A + + IP + Sbjct: 135 SISSVAGDLFVAE-KLDGISIEVIYKGGKLVDAITRGDGEWGERITANVARMKGIPSRIR 193 Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF 238 + VRGE+ + +D + +PRN A+G +R + + Sbjct: 194 E--KGRLSVRGEIILRLSD--------MKRHFPGVTSPRNMAAGAAKRFDGQGA-EHCTV 242 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 + + EI + P + Y +E +R+ L Y+ Sbjct: 243 LFYDVADHLEIPTCRARFAWLRELGFATPQTAHGSVEDVVKLYRRYSSE---LRAGLDYE 299 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDGLV VD +Q LG+ R PR ++ KFA T ++ I G +G +TPVA + Sbjct: 300 IDGLVVYVDSLHVQGLLGDVNRRPRGAVAFKFASPAKVTTVVAIQWDTGPSGRVTPVAIV 359 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV + GA + A+LHN ++ L I VGD VLV R +VIP V +++ Sbjct: 360 EPVELAGANVRRASLHNSANVRSL-----------GIGVGDEVLVSRRNDVIPYVEEVV- 407 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 PS CP+C + +V + + A C + Sbjct: 408 ---EKRGPVAVPPSVCPVCSAPLVVEGEYLLCRNAA---CRALIEGRIHNWIDAI----- 456 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 + D + A +R P D++ L + I ++ G+ S T Sbjct: 457 -------GALEWGDKLIEQVVAAGLVREPLDLYKL------TVKSIADLDRRGEKSATKC 503 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLS 597 + + R ++L F+ +LGI + AR L Y + + Sbjct: 504 LEQLKSRLPLALPVFLAALGIEGFAIQTARLLVSAGYTTIEKLLAAGE----------DE 553 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657 L +P +G I A +IV + + LL + + + FTG Sbjct: 554 LAGIPGLGAIKAASIVRGLRARS--DEIGRLLAAGIVPVAPEAE---GPLAGLTFCFTGA 608 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFL 715 + R + V G V ++++ + +++ D + SK KA++ G K++ E+ Sbjct: 609 GAR-PRGELTHLVESSGGRVLNSVTKELNYLVIADVASTSSKAVKARKYGTKLITEDDLD 667 Query: 716 FLLQQ 720 L+ + Sbjct: 668 KLIAE 672 >gi|33519955|ref|NP_878787.1| DNA ligase [Candidatus Blochmannia floridanus] gi|81666906|sp|Q7VRU2|DNLJ_BLOFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|33504301|emb|CAD83193.1| DNA ligase [Candidatus Blochmannia floridanus] Length = 594 Score = 323 bits (827), Expect = 8e-86, Method: Composition-based stats. Identities = 199/627 (31%), Positives = 316/627 (50%), Gaps = 49/627 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + + L + ++Y + YY S+ + D EYD L + +P L + Sbjct: 1 MKLIKNRVQILRERLNYLEYLYYVKSESKVSDEEYDILLEELRQLEFKYPYLI---TKSS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS---IFFTL 130 I + SL ++ H P LSL I + L F RI + + I + Sbjct: 58 STQSISNVCDNSLNRIRHQKPMLSLNSIRDKSQLLLFDKRIKYKLSNHYNINQNLIVYCC 117 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI----IE 186 E KIDG ++I Y++GK V+AA RGDG GE+V+ + AI +IP+ L N EI +E Sbjct: 118 ELKIDGVALSILYKQGKLVHAATRGDGKIGENVTKNVNAIDSIPKNLKKNNNEILPDLLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245 +RGE++ISK F LN EM++ G+K ++N RNAASG LR+L+P R L F +G+ Sbjct: 178 IRGEIFISKLSFSKLNQEMLSSGKKVFSNARNAASGSLRQLDPHVTELRSLVFCCYGISY 237 Query: 246 TSEIF--AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 + + + L+ G +NN ++ + ++ YYN ++ IRS L Y IDG+V Sbjct: 238 YAGLKQLPNSHWGRLKLCNRWGLSINNYIQIVSGIDPVLEYYNYVRKIRSELEYQIDGIV 297 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 K+D Q QLG R+P W +++KF + T+L D+ ++GRTG++TP+A + PV I Sbjct: 298 IKIDNCIYQDQLGCGFRAPNWAVAYKFPAELKLTKLNDVVFKVGRTGLITPIAYINPVVI 357 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G +I +HN + +K L ++ +GD V+V+R+G+VIPK++ II+ R Sbjct: 358 GNVIIKKVNMHNVNEVKRL-----------NLMIGDTVIVQRSGDVIPKILKIILENRVD 406 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 +A+ P FCP C S + + N + RC L C AQ+ LKHF SR A NI Sbjct: 407 NAKFIKIPEFCPSCGSILKVEDN-----KSSVLRCLAKLTCLAQRKSALKHFASRKAMNI 461 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +G+G + ++ I P D F+L + K+ + +G+ S L SI Sbjct: 462 QGMGSRVINQLVDK----GLICTPVDFFSLSKE------KLLCLDRYGEKSAERLLQSIL 511 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + I+L FI++LGI VG ++ LA Y + +N D S +++ Sbjct: 512 IAKEITLSAFIYALGIPGVGESVSNKLAYMYRTIENLMNA----------DLQSFLQLKF 561 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLK 630 +G I A I F N ++ L++ Sbjct: 562 IGKIAAMNIYSFLHQSDNYNNIQGLIR 588 >gi|289759140|ref|ZP_06518518.1| LOW QUALITY PROTEIN: NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T85] gi|289714704|gb|EFD78716.1| LOW QUALITY PROTEIN: NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T85] Length = 449 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 137/463 (29%), Positives = 222/463 (47%), Gaps = 30/463 (6%) Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 R G P N G+ + R + ++IDG+V KVDE +LQ++LG +R+ Sbjct: 15 RAWGLPGFRTHHPGNRPAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGFTSRA 74 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW I++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ + ATLHN IK Sbjct: 75 PRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQATLHNASEIKR 134 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 + + +GD V++++AG+VIP+V+ +V R + F P+ CP C S + Sbjct: 135 -----------KGVLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPTTCPECGSPL 183 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 + + A RC C Q ER+ H SR+ +IE LG + +++ Sbjct: 184 APE-----KEGDADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYEAGVALLQAK--- 235 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 I ++F L R T G + L +++K + L R + +L IRH Sbjct: 236 -VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVALSIRH 294 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 VG AR+LA + S A L V VG IA A+ E++ + Sbjct: 295 VGPTAARALATEFGSLDAIAAA----------STDQLAAVEGVGPTIAAAVTEWFAVDWH 344 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 V+ + +++V + +V TG+L R A+E + G + + Sbjct: 345 REIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVARGGKAAGSV 404 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 S+KT+ ++ GD+PGSK +KA +LGV I++E+ F LL + Sbjct: 405 SKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLLADGPAS 447 >gi|237757130|ref|ZP_04585563.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium yellowstonense SS-5] gi|237690707|gb|EEP59882.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium yellowstonense SS-5] Length = 490 Score = 320 bits (819), Expect = 6e-85, Method: Composition-based stats. Identities = 174/487 (35%), Positives = 270/487 (55%), Gaps = 35/487 (7%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + + L+ E+A+K + L + I +HD YY ++P+I D EYD L + I + +P+L Sbjct: 20 LDAKKLTKEEAKKIVEDLREVIRFHDWRYYILAQPVISDYEYDKLFKLLKDIENKYPELI 79 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P+ P +I E+ +V H P LSL+ +N DLR F R+ + + Sbjct: 80 ---TPDSPTQRIPSEITKVFPQVKHLTPMLSLDNSYNEADLRDFDRRVRELTGL---DKV 133 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-- 184 +++EPK DG I++ YEK FV A RGDG GE+++ ++ I TIP + I Sbjct: 134 EYSVEPKFDGAGISLIYEKDLFVRGATRGDGEVGEEITNNLKVIKTIPLSAKFSQYGIDK 193 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL 243 +E+RGEV I K+ F +N+E + G +ANPRNAA+G +R +P++ R L FV+ + Sbjct: 194 VEIRGEVLIRKDLFKKMNEERLEEGLPLFANPRNAAAGSIRLQDPSEVAKRNLEAFVYHI 253 Query: 244 GKTSEI-------FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTL 295 + K + ++ + LGF ++ ++ Y E + R T Sbjct: 254 TYAEKDGKNLLGTVLKKHSDNIKMLHELGFKTPYPVMKVCIGIEEVIQYCEEWQRKRDTY 313 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 PY+IDG+V KV++ SL +LG + PRW I+ KF +QA+T+++++ Q+GRTG +TPV Sbjct: 314 PYEIDGMVIKVNDISLYDKLGFTSHHPRWAIAFKFKARQATTKIINVVFQVGRTGAITPV 373 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 A+LEPV IGG ++++ +L NED+I+ +DIR+GD VLV+RAG+VIP VV Sbjct: 374 AKLEPVEIGGVIVSSVSLINEDFIR-----------EKDIRIGDTVLVERAGDVIPYVVM 422 Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475 +I R + +P FP CP C S +V+ A +RC + C AQ +ERL HF Sbjct: 423 VIKEARTGNEKPIEFPKTCPSCGSPIVKPPGE------AVYRCVN-INCPAQVIERLIHF 475 Query: 476 VSRDAFN 482 S+DA Sbjct: 476 ASKDAMR 482 >gi|254430924|ref|ZP_05044627.1| DNA ligase, NAD-dependent [Cyanobium sp. PCC 7001] gi|197625377|gb|EDY37936.1| DNA ligase, NAD-dependent [Cyanobium sp. PCC 7001] Length = 667 Score = 319 bits (816), Expect = 1e-84, Method: Composition-based stats. Identities = 165/517 (31%), Positives = 256/517 (49%), Gaps = 40/517 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 E R ++ L++ ++ YY P++ D YD L R + A P+L R P+ Sbjct: 5 PEPLRDRIAELQRLLTQAAHAYYVLDAPVMEDPVYDRLYRELLELEQAHPELIR---PDS 61 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK-----KDDNSIFF 128 P ++GG V H I LSL+ ++ E+L + R+ + + + + Sbjct: 62 PTQRVGGSPAEGFRSVEHRIALLSLDNAFSTEELEAWYARLLKVLDRTPAAGEPLPDLAM 121 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEV 187 E KIDG + + Y +G AA RGDG GE+++A +R I ++P L P +EV Sbjct: 122 VGELKIDGNALALSYREGLLERAATRGDGERGEEITANVRTIQSVPLRLRLQAPPAWVEV 181 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL--- 243 RGE I F A+N E +A G +ANPRNA +G LR+L+P R L+FF + L Sbjct: 182 RGEALIPDGTFAAINAERLARGEPAFANPRNACAGTLRQLDPQVVADRRLDFFAYTLHLP 241 Query: 244 -----GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 G Q+E L +R GF VN + +++ + R LPY Sbjct: 242 DDWQPGPGDPPRPSSQWESLAWLRAAGFKVNPNAELLADLAAVEAFFTRWEPERRQLPYA 301 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 DG+V K+D+ LQ G ++PRW I+ K+A ++A +RLL + Q+GRTG++TPVA Sbjct: 302 TDGVVVKLDDLRLQADAGFTQKAPRWAIALKYAAEEAPSRLLRLSCQVGRTGVVTPVAEF 361 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV + G ++ ATLHN D + L D+ GD ++V++AGE+IP+VV ++ Sbjct: 362 EPVALAGTSVSRATLHNADRLAEL-----------DLHAGDTIVVRKAGEIIPEVVRVLP 410 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 R A+ P CP C S +VR+ AA RC +C A L+H+VS+ Sbjct: 411 ELRPAAARRLELPRHCPECGSELVREAGE------AATRCVNS-SCPAILRGALRHWVSK 463 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQR 515 A +++GLG + ++ +R A ++ L Sbjct: 464 AALDVDGLGSKLIEQLVDR----GLVRSIAGLYRLDA 496 >gi|254229732|ref|ZP_04923141.1| DNA ligase, NAD-dependent [Vibrio sp. Ex25] gi|151937777|gb|EDN56626.1| DNA ligase, NAD-dependent [Vibrio sp. Ex25] Length = 407 Score = 319 bits (816), Expect = 2e-84, Method: Composition-based stats. Identities = 165/444 (37%), Positives = 256/444 (57%), Gaps = 39/444 (8%) Query: 278 FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAST 337 + +YY ++ R LPY+IDG+V K+D+ ++Q++LG AR+PRW I++KF ++ T Sbjct: 1 MADVKAYYQDILQRRDALPYEIDGVVIKIDDIAVQERLGFVARAPRWAIAYKFPAQEEMT 60 Query: 338 RLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRV 397 L +++ Q+GRTG +TPVA+LEPV +GG ++NATLHN D I+ L +++ Sbjct: 61 TLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIERLQ-----------VKI 109 Query: 398 GDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR 457 GD V+++RAG+VIP+VV +I R A+ FP+ CP+C S V R A R Sbjct: 110 GDHVVIRRAGDVIPQVVSVIKERRPETARDIIFPTQCPVCGSHVERIEGE------AVTR 163 Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ 517 CTGGL C AQ+ + LKHFVSR A +++GLG + ++ E ++ PAD+F L Sbjct: 164 CTGGLVCQAQRKQALKHFVSRKALDVDGLGDKVIEQLVDRE----MVKTPADLFKL---- 215 Query: 518 QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577 S + + G S N+ +++ K + +L RF++SLGIR VG A +LA ++ + Sbjct: 216 --SAGILTVLDRMGPKSAQNIVNALEKSKETTLPRFLYSLGIREVGEATAANLAMHFKTL 273 Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS--PS 635 + LI V +G ++AQ I F+ +N V+ LL++ P Sbjct: 274 EAIQNANE----------EQLIEVQDIGAVVAQHITTFFSEEQNQAVVKDLLEQGIHWPE 323 Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695 I E+ +E K +V TGTL ++ R +A+E + LGA V+ +S+KTDI+ G+N G Sbjct: 324 INTTEQVGELPLEGKTVVLTGTLSQLGRTEAKEALQSLGAKVTGSVSKKTDILFAGENAG 383 Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719 SKL KAQ+LG++I E+ L L+ Sbjct: 384 SKLAKAQELGIEIKTEQDLLELMN 407 >gi|13235502|emb|CAC33764.1| DNA ligase [Rickettsia typhi] Length = 492 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 191/508 (37%), Positives = 313/508 (61%), Gaps = 23/508 (4%) Query: 213 YANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G +R+L+ R L +F++ G T + A Q ++L K++ L F VN Sbjct: 1 FANPRNAAAGSIRQLDVAITAQRPLKYFIYSGGVTEKNLASTQEQLLAKLKALSFSVNEI 60 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 + A++ I ++Y +K+ R LPY+IDG+VYK++ F++Q ++G ARSPR+ I+HKF Sbjct: 61 SKLASSEEEIFAFYEYLKTNRHNLPYEIDGVVYKLNNFAMQNRMGFIARSPRFAIAHKFP 120 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 T+LL I +Q+GRTG+LTPVA L+P+ IGG +++ ATLHN I Sbjct: 121 AIIGQTKLLSITVQVGRTGMLTPVAELDPLEIGGVVVSRATLHNFQDIAR---------- 170 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +D+R+ D V ++RAG+VIP++ + +++R D F P FCP C S++ Sbjct: 171 -KDVRIKDYVFLQRAGDVIPQITGVDISKRSNDTVKFDTPVFCPSCNSKLRY------VS 223 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 RC GL C AQ ER+ HFVS++A +I GLG++Q+ F I P DIF Sbjct: 224 EDIIIRCDNGLNCPAQNYERICHFVSKNAMDIAGLGRKQVAFLIDKR----LISNPLDIF 279 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 L+++ +T+ ++EN+ G+G SV NL+ +I K + ISL+RFI++LGIRH+G + A+ LA Sbjct: 280 FLKKKNETNLIRLENMDGWGKKSVANLWQNIEKSQKISLQRFIYALGIRHIGEQNAKLLA 339 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 + ++SY NF ++ + +++D + L + +GD + I++F+ NI ++ L Sbjct: 340 REFVSYNNFIAQMELLSKNDSDVYQKLNDLEGIGDKMLVDIIDFFYVKENIQLIKKLGAV 399 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ + + + + K LVFTG+L+ I R +A+E +LGA V++ +S TD++IVG Sbjct: 400 LNIEDYKETREQN-ILTGKILVFTGSLKTISRVEAKEIAEKLGAKVASSVSSNTDLLIVG 458 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 N GSKL+KA++L +KI++E ++L ++ Sbjct: 459 VNGGSKLKKAKELNIKIIDEAEWLAFIK 486 >gi|289178474|gb|ADC85720.1| NAD-dependent DNA ligase [Bifidobacterium animalis subsp. lactis BB-12] Length = 889 Score = 317 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 159/509 (31%), Positives = 263/509 (51%), Gaps = 35/509 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + + L++EQA + S L + YY P+ D+ YDA + FP L Sbjct: 64 LDVSKLNVEQAVRLWSRLSAWVEGDQVAYYVKDAPLSSDAAYDARMNCLKRLESEFPQL- 122 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 + P P +++GG + V H +SL+ +++ E+LR + + + + +D + Sbjct: 123 --DTPQSPTHRVGGTFSNDFTAVRHPSQMMSLDDVFSFEELRAWYDGVRKDLEWPEDKLL 180 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPE 183 T E KIDG + + Y G RGDG +GED++ +R I +IP +IP+ Sbjct: 181 PMTCEVKIDGLALNLIYRNGVLTQGLTRGDGVTGEDITMNVRTIHSIPTNLDGPEGDIPD 240 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 ++E+RGEV++ +DF LN+ GR P+ANPRNAA+G LR+ +P R+L+F+ HG Sbjct: 241 MVEIRGEVFMRWDDFHKLNEANEDAGRPPFANPRNAAAGSLRQKDPRITAQRHLSFYAHG 300 Query: 243 LGKTSE---------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293 +G+ + Q + R G P++ R+ F I+ R Sbjct: 301 IGELVWGSGKPVDVADEVRNQSDAYTMYRKWGVPISPHNREVTDFDQILDMIEYYGEHRG 360 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 + + +DG+V KVD+ +LQ++LG +R+PRW I++K+ ++ +T+LL+I +Q+GRTG +T Sbjct: 361 DIEHALDGIVVKVDDLALQRRLGSTSRAPRWAIAYKYPPEEVNTKLLNIVVQVGRTGRVT 420 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 PVA L PV + G+ ++ TLHN +K + I +GD V+V++AG+VIP++ Sbjct: 421 PVAILNPVYVAGSTVSRTTLHNAYEVKR-----------KGILIGDTVVVRKAGDVIPEL 469 Query: 414 VDIIVNERHPDAQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 V ++ +R Q F P+ CP C + + + + RC +C AQ E Sbjct: 470 VGPVIAKREGHEQDLREFVMPTRCPSCDTVLRYE-----KEGDKDLRCPNSESCPAQLAE 524 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 R+ + +R AF+IE LG Q ED Sbjct: 525 RVINLAARKAFDIEHLGDQSAVALTNPED 553 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 16/194 (8%) Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 + + D I K ++ L R + +L IRHVG A +LAK++ + A Sbjct: 702 PTENTRKMLDEIEKAKHTDLSRVLVALSIRHVGPPTAFTLAKHFKTLDALADA------- 754 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI-----CAVEALLKEVSPSIGRHEKNVSS 645 L ++ +G IA +I F++ R +EA + H++ + Sbjct: 755 ---SAEELEQIDGIGAEIADSIATFFEEARMPGNWRGRVLEAWKAAGV-GMSTHDEGLPQ 810 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 +E K +V TGTL+ R A+E + + G S +SRKTD ++VG NPGSK KA++LG Sbjct: 811 TLEGKSVVVTGTLEHFSRESAKEAIERRGGKASGSVSRKTDWVVVGANPGSKATKAEELG 870 Query: 706 VKIMNEEQFLFLLQ 719 + I++E+QF LL Sbjct: 871 IPIIDEQQFDTLLA 884 >gi|183601766|ref|ZP_02963136.1| LigA [Bifidobacterium animalis subsp. lactis HN019] gi|219683704|ref|YP_002470087.1| DNA ligase, NAD-dependent [Bifidobacterium animalis subsp. lactis AD011] gi|241190736|ref|YP_002968130.1| LigA [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196142|ref|YP_002969697.1| LigA [Bifidobacterium animalis subsp. lactis DSM 10140] gi|254781258|sp|B8DU32|DNLJ_BIFA0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|183219372|gb|EDT90013.1| LigA [Bifidobacterium animalis subsp. lactis HN019] gi|219621354|gb|ACL29511.1| DNA ligase, NAD-dependent [Bifidobacterium animalis subsp. lactis AD011] gi|240249128|gb|ACS46068.1| LigA [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250696|gb|ACS47635.1| LigA [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793725|gb|ADG33260.1| LigA [Bifidobacterium animalis subsp. lactis V9] Length = 863 Score = 317 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 159/509 (31%), Positives = 263/509 (51%), Gaps = 35/509 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + + L++EQA + S L + YY P+ D+ YDA + FP L Sbjct: 38 LDVSKLNVEQAVRLWSRLSAWVEGDQVAYYVKDAPLSSDAAYDARMNCLKRLESEFPQL- 96 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 + P P +++GG + V H +SL+ +++ E+LR + + + + +D + Sbjct: 97 --DTPQSPTHRVGGTFSNDFTAVRHPSQMMSLDDVFSFEELRAWYDGVRKDLEWPEDKLL 154 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPE 183 T E KIDG + + Y G RGDG +GED++ +R I +IP +IP+ Sbjct: 155 PMTCEVKIDGLALNLIYRNGVLTQGLTRGDGVTGEDITMNVRTIHSIPTNLDGPEGDIPD 214 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 ++E+RGEV++ +DF LN+ GR P+ANPRNAA+G LR+ +P R+L+F+ HG Sbjct: 215 MVEIRGEVFMRWDDFHKLNEANEDAGRPPFANPRNAAAGSLRQKDPRITAQRHLSFYAHG 274 Query: 243 LGKTSE---------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293 +G+ + Q + R G P++ R+ F I+ R Sbjct: 275 IGELVWGSGKPVDVADEVRNQSDAYTMYRKWGVPISPHNREVTDFDQILDMIEYYGEHRG 334 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 + + +DG+V KVD+ +LQ++LG +R+PRW I++K+ ++ +T+LL+I +Q+GRTG +T Sbjct: 335 DIEHALDGIVVKVDDLALQRRLGSTSRAPRWAIAYKYPPEEVNTKLLNIVVQVGRTGRVT 394 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 PVA L PV + G+ ++ TLHN +K + I +GD V+V++AG+VIP++ Sbjct: 395 PVAILNPVYVAGSTVSRTTLHNAYEVKR-----------KGILIGDTVVVRKAGDVIPEL 443 Query: 414 VDIIVNERHPDAQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 V ++ +R Q F P+ CP C + + + + RC +C AQ E Sbjct: 444 VGPVIAKREGHEQDLREFVMPTRCPSCDTVLRYE-----KEGDKDLRCPNSESCPAQLAE 498 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 R+ + +R AF+IE LG Q ED Sbjct: 499 RVINLAARKAFDIEHLGDQSAVALTNPED 527 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 16/194 (8%) Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 + + D I K ++ L R + +L IRHVG A +LAK++ + A Sbjct: 676 PTENTRKMLDEIEKAKHTDLSRVLVALSIRHVGPPTAFTLAKHFKTLDALADA------- 728 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI-----CAVEALLKEVSPSIGRHEKNVSS 645 L ++ +G IA +I F++ R +EA + H++ + Sbjct: 729 ---SAEELEQIDGIGAEIADSIATFFEEARMPGNWRGRVLEAWKAAGV-GMSTHDEGLPQ 784 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 +E K +V TGTL+ R A+E + + G S +SRKTD ++VG NPGSK KA++LG Sbjct: 785 TLEGKSVVVTGTLEHFSRESAKEAIERRGGKASGSVSRKTDWVVVGANPGSKATKAEELG 844 Query: 706 VKIMNEEQFLFLLQ 719 + I++E+QF LL Sbjct: 845 IPIIDEQQFDTLLA 858 >gi|215447287|ref|ZP_03434039.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T85] Length = 416 Score = 317 bits (811), Expect = 6e-84, Method: Composition-based stats. Identities = 132/444 (29%), Positives = 217/444 (48%), Gaps = 30/444 (6%) Query: 281 IVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLL 340 + + R + ++IDG+V KVDE +LQ++LG +R+PRW I++K+ ++A T+LL Sbjct: 1 MRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGFTSRAPRWAIAYKYPPEEAQTKLL 60 Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400 DI + +GRTG +TP A + PV + G+ + ATLHN IK + + +GD Sbjct: 61 DIRVNVGRTGRITPFAFMTPVKVAGSTVGQATLHNASEIKR-----------KGVLIGDT 109 Query: 401 VLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG 460 V++++AG+VIP+V+ +V R + F P+ CP C S + + + A RC Sbjct: 110 VVIRKAGDVIPEVLGPVVELRDGSEREFIMPTTCPECGSPLAPE-----KEGDADIRCPN 164 Query: 461 GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS 520 C Q ER+ H SR+ +IE LG + +++ I ++F L R Sbjct: 165 ARGCPGQLRERVFHVASRNGLDIEVLGYEAGVALLQAK----VIADEGELFALTERDLLR 220 Query: 521 TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580 T G + L +++K + L R + +L IRHVG AR+LA + S Sbjct: 221 TDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAI 280 Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 A L V VG IA A+ E++ + V+ + + Sbjct: 281 AAA----------STDQLAAVEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERD 330 Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700 ++V + +V TG+L R A+E + G + +S+KT+ ++ GD+PGSK +K Sbjct: 331 ESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDK 390 Query: 701 AQQLGVKIMNEEQFLFLLQQYNTT 724 A +LGV I++E+ F LL + Sbjct: 391 AVELGVPILDEDGFRRLLADGPAS 414 >gi|171742735|ref|ZP_02918542.1| hypothetical protein BIFDEN_01849 [Bifidobacterium dentium ATCC 27678] gi|283456203|ref|YP_003360767.1| NAD-dependent DNA ligase [Bifidobacterium dentium Bd1] gi|171278349|gb|EDT46010.1| hypothetical protein BIFDEN_01849 [Bifidobacterium dentium ATCC 27678] gi|283102837|gb|ADB09943.1| NAD-dependent DNA ligase [Bifidobacterium dentium Bd1] Length = 897 Score = 317 bits (811), Expect = 6e-84, Method: Composition-based stats. Identities = 166/509 (32%), Positives = 258/509 (50%), Gaps = 34/509 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + + +LS E A + + + + YY PI D+ YDA R A+ FP L Sbjct: 61 LDVSSLSAEAAARLWAKVAAWVESDQIAYYIDDAPISSDAAYDARLRCLQALESQFPSL- 119 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 + P P +++GG + V H +SL+ +++IE+LR + + R + + Sbjct: 120 --DTPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVIRDLDWPESKPL 177 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPE 183 T E KIDG + + Y G RGDG +GED++ +R I TIP+ +IPE Sbjct: 178 PMTCEVKIDGLALNLVYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEGDIPE 237 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 +E+RGEV++ +DF ALN E GR P+ANPRNAA+G LR+ +P TR L+F+ HG Sbjct: 238 FVEIRGEVFMRWDDFAALNGENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 297 Query: 243 LGKTSE--------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 +G Q E G PV+ R+ +F I+ + R Sbjct: 298 IGSLRWGAGRADRHDVINHQSEAYALYEKWGVPVSPHNREITSFTDILDMIDYYGEHRGD 357 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LLDI +Q+GRTG +TP Sbjct: 358 IEHALDGIVVKVDDLGLQRALGATSRAPRWAIAYKYPPEEVNTDLLDITVQVGRTGRVTP 417 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VA L+PV + G+ ++ TLHN ++ + + +GD V+V++AG+VIP++V Sbjct: 418 VAILKPVYVAGSTVSRTTLHNPFEVER-----------KGVLIGDTVVVRKAGDVIPELV 466 Query: 415 DIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 ++ R F P+ CP C + + K RC +C AQ ER Sbjct: 467 GPVLERRKGREESLHAFVMPTHCPSCGAELA-----PAKKGDKDIRCPNVESCPAQLTER 521 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 + + SR AF+IE LG Q E+ Sbjct: 522 IINLASRKAFDIEHLGDQSAIALTNPEED 550 Score = 200 bits (509), Expect = 7e-49, Method: Composition-based stats. Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 16/199 (8%) Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 + + + + D + K R++ L R + +L IR +G AR++A + S Sbjct: 705 QPVYVRPAENTRKMLDEMEKARHVDLWRVLVALSIRRLGPPTARTIATAFGSLDAIEHA- 763 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY---QNPRNIC--AVEALLKEVSPSIGRH 639 L + +G IA+++V ++ P N ++A + Sbjct: 764 ---------SVEELSAIDGIGPEIAESVVTWFTAAHEPGNWRGTVLDAWKTAGVGVVAET 814 Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 ++ + K +V TG+L R A+E + G + +SRKTD ++VG+N GSK Sbjct: 815 N-DLPQTLAGKTVVVTGSLVDFSRDSAKEAIISHGGKAAGSVSRKTDWVVVGENAGSKAA 873 Query: 700 KAQQLGVKIMNEEQFLFLL 718 KA++LG+ ++NE+QF LL Sbjct: 874 KAEELGIPMLNEDQFKQLL 892 >gi|1770452|emb|CAA66920.1| ligase-like protein [Homo sapiens] Length = 454 Score = 316 bits (810), Expect = 7e-84, Method: Composition-based stats. Identities = 151/446 (33%), Positives = 238/446 (53%), Gaps = 22/446 (4%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 + PIE LS A++E++ L+ +++ + YY+ P++ D YDAL R A+ AFP Sbjct: 3 PEFTPIEQLSTSAAQQEVAQLQADLTEYGVAYYEQDAPLVEDHVYDALYARLVALESAFP 62 Query: 64 DLARSEDPNGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 + P +GG + L KV H P LSL ++++E+L + R + + Sbjct: 63 QFVTQ---DSPTQNVGGALTKSGLAKVEHPAPMLSLGDVFSLEELAAWDERTTKSLGFQS 119 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 + LE KIDG + + Y G+ V A+ RG+G GEDV+ ++ I IP+ L+ + Sbjct: 120 ----PYNLELKIDGLAVALTYVDGRLVQASTRGNGTIGEDVTRNVKTIKAIPQQLTEPL- 174 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVH 241 IEVRGE+Y+ K F ALN + A G +P+ANPRNAA+G LR+L+ R L+ FV+ Sbjct: 175 -TIEVRGEIYMPKKSFAALNVQREADGLEPFANPRNAAAGSLRQLDAQVTKQRELSAFVY 233 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 + + Q L + LG P + + I + + R TL Y IDG Sbjct: 234 YTAEPEVLGVTTQSGALARFAELGLPTDTHNQVIEKMADIADFIATYTAKRDTLAYGIDG 293 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V KV+ Q +LG + PRW I++KF ++A T + DI+ +GRTG +TP A ++PV Sbjct: 294 VVVKVNALDNQVELGNTVKIPRWAIAYKFPPEEALTVVRDIEWTVGRTGAVTPTAIMDPV 353 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G + A+LHN DY++ +DIR+GD V + +AG++IP+V +I+++R Sbjct: 354 QLAGTTVQRASLHNPDYLQ-----------QKDIRIGDTVTLHKAGDIIPEVGQVILSQR 402 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNP 447 D+ + P CP C S +V Sbjct: 403 PADSIAYPIPVACPACGSELVHISGE 428 >gi|154488672|ref|ZP_02029521.1| hypothetical protein BIFADO_01979 [Bifidobacterium adolescentis L2-32] gi|154082809|gb|EDN81854.1| hypothetical protein BIFADO_01979 [Bifidobacterium adolescentis L2-32] Length = 890 Score = 316 bits (810), Expect = 7e-84, Method: Composition-based stats. Identities = 161/510 (31%), Positives = 261/510 (51%), Gaps = 35/510 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + + ++S E A + + + + YY P+ D+ YDA R ++ FP L Sbjct: 59 VDVASMSAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARLRCLQSLEAQFPSL- 117 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 + P P +++GG + V H +SL+ +++IE+LR++ + R + + Sbjct: 118 --DSPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELREWYDGVLRGLDWPESKPL 175 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPE 183 T E KIDG + + Y G RGDG +GED++ +R I TIP+ +IPE Sbjct: 176 PMTCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEEDIPE 235 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 +E+RGEV++ +DF LN E GR P+ANPRNAA+G LR+ +P TR L+F+ HG Sbjct: 236 FVEIRGEVFMRWDDFNKLNAENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 295 Query: 243 LGKTSE---------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293 +G Q E + + G PV+ R+ +F I+ + R Sbjct: 296 IGSLRWGAGHAGNGHDVVNDQSEAYELYKKWGVPVSPHNREVTSFKEILDMIDYYGEHRG 355 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LLDI +Q+GRTG +T Sbjct: 356 DIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVT 415 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 PVA L+PV + G+ ++ TLHN ++ + + +GD V+V++AG+VIP++ Sbjct: 416 PVAVLKPVYVAGSTVSRTTLHNPFEVER-----------KGVLIGDTVVVRKAGDVIPEL 464 Query: 414 VDIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 V ++ R + F P+ CP C + + + RC +C AQ E Sbjct: 465 VGPVLERRKGREGQIRRFVMPTRCPSCGAELA-----PAKEGDKDIRCPNVESCPAQLTE 519 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 R+ + SR AF+IE LG Q E+ Sbjct: 520 RIINLASRKAFDIEHLGDQSAIALTNPEED 549 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 15/194 (7%) Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 + + D ++K R+ L R + +L IR +G AR++A + + Sbjct: 702 PAENTRKMLDEMDKARHADLWRVLVALSIRRLGPPTARTIASAFGTLDAIEHA------- 754 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFY---QNPRNI--CAVEALLKEVSPSIGRHEKNVSS 645 L ++ +G IA+++V ++ + P N ++A + Sbjct: 755 ---SVDELSQIDGIGPEIAESVVTWFTAAREPGNWRGAVLDAWKAAGVGVGQAQASGLPQ 811 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 + K +V TG+L+ R A+E + G + +S+KTD ++VG+N GSK KA++LG Sbjct: 812 TLAGKTVVVTGSLEGFSRDSAKEAIVLRGGKAAGSVSKKTDWVVVGENAGSKAAKAEELG 871 Query: 706 VKIMNEEQFLFLLQ 719 + ++NE+QF LL Sbjct: 872 IPMLNEDQFKQLLD 885 >gi|119025970|ref|YP_909815.1| LigA [Bifidobacterium adolescentis ATCC 15703] gi|166215398|sp|A1A200|DNLJ_BIFAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|118765554|dbj|BAF39733.1| LigA [Bifidobacterium adolescentis ATCC 15703] Length = 892 Score = 316 bits (810), Expect = 7e-84, Method: Composition-based stats. Identities = 161/510 (31%), Positives = 261/510 (51%), Gaps = 35/510 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + + ++S E A + + + + YY P+ D+ YDA R ++ FP L Sbjct: 61 VDVASMSAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARLRCLQSLEAQFPSL- 119 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 + P P +++GG + V H +SL+ +++IE+LR++ + R + + Sbjct: 120 --DSPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELREWYDGVLRGLDWPESKPL 177 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPE 183 T E KIDG + + Y G RGDG +GED++ +R I TIP+ +IPE Sbjct: 178 PMTCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEEDIPE 237 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 +E+RGEV++ +DF LN E GR P+ANPRNAA+G LR+ +P TR L+F+ HG Sbjct: 238 FVEIRGEVFMRWDDFNKLNAENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 297 Query: 243 LGKTSE---------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293 +G Q E + + G PV+ R+ +F I+ + R Sbjct: 298 IGSLRWGAGHAGNGHDVVNDQSEAYELYKKWGVPVSPHNREVTSFKEILDMIDYYGEHRG 357 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LLDI +Q+GRTG +T Sbjct: 358 DIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVT 417 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 PVA L+PV + G+ ++ TLHN ++ + + +GD V+V++AG+VIP++ Sbjct: 418 PVAVLKPVYVAGSTVSRTTLHNPFEVER-----------KGVLIGDTVVVRKAGDVIPEL 466 Query: 414 VDIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 V ++ R + F P+ CP C + + + RC +C AQ E Sbjct: 467 VGPVLERRKGREGELRRFVMPTRCPSCGAELA-----PAKEGDKDIRCPNVESCPAQLTE 521 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 R+ + SR AF+IE LG Q E+ Sbjct: 522 RIINLASRKAFDIEHLGDQSAIALTNPEED 551 Score = 201 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 15/194 (7%) Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 + + D ++K R+ L R + +L IR +G AR++A + + Sbjct: 704 PAENTRKMLDEMDKARHADLWRVLVALSIRRLGPPTARTIASAFGTLDAIEHA------- 756 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFY---QNPRNI--CAVEALLKEVSPSIGRHEKNVSS 645 L ++ +G IA+++V ++ + P N ++A + Sbjct: 757 ---SVDELSQIDGIGSEIAESVVTWFTAAREPGNWRGAVLDAWKAAGVGVGQAQASGLPQ 813 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 + K +V TG+L+ R A+E + G + +S+KTD ++VG+N GSK KA++LG Sbjct: 814 TLAGKTVVVTGSLEGFSRDSAKEAIVLRGGKAAGSVSKKTDWVVVGENAGSKAAKAEELG 873 Query: 706 VKIMNEEQFLFLLQ 719 + ++NE+QF LL Sbjct: 874 IPMLNEDQFKQLLD 887 >gi|207723346|ref|YP_002253745.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) (partial sequence n terminus) protein [Ralstonia solanacearum MolK2] gi|206588545|emb|CAQ35508.1| probable dna ligase (polydeoxyribonucleotide synthase [nad+]) (partial sequence n terminus) protein [Ralstonia solanacearum MolK2] Length = 568 Score = 316 bits (809), Expect = 1e-83, Method: Composition-based stats. Identities = 199/564 (35%), Positives = 295/564 (52%), Gaps = 51/564 (9%) Query: 29 SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88 + + YY +P + D+EYD L R +A+ P+L P+ P ++GG + Sbjct: 25 NRYAHEYYVLDQPSVPDAEYDRLYRALEALEAEHPEL---RTPDSPTLRVGGAVLPEFAP 81 Query: 89 VTHSIPTLSLEKIWNI--EDLRKFITRIYRFWQKKD-DNSIFFTLEPKIDGTMITIRYEK 145 V H +P LS+ + + F + R + D + + E K DG I +RYE+ Sbjct: 82 VRHVVPMLSIRTETDTTADGALAFDASVRRELGLAESDPPVEYAAELKFDGLAINLRYEQ 141 Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISKNDFLALN 202 G V AA RGDG +GEDV+ IR I IP R + +P+++EVRGEVY+ ++DF LN Sbjct: 142 GFLVQAATRGDGATGEDVTQNIRTIRQIPLGLRPVDGAVPDVLEVRGEVYMRRDDFERLN 201 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGK--TSEIFAKGQYEMLQ 259 G K + NPRN A+G +R+L+P +FF +GLG+ + ML Sbjct: 202 ARQRERGEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWSGMPETHSGMLD 261 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 + LGFPV+ G+V ++ + + R +LP+DIDG+VYKV+ +LQ++LG R Sbjct: 262 ALVALGFPVSKERAAVMGGEGLVQFHAAIGAKRDSLPFDIDGVVYKVNALALQRELGFRT 321 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 R PRW ++HK+ ++A T + I +Q+GRTG +TPVARL PV +GG +TNATLHNED + Sbjct: 322 REPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEV 381 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER---------------HPD 424 + +D+RVGD V+V+RAG+VIP+VV +++ R P Sbjct: 382 RR-----------KDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLFNPVQQPK 430 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + PF P CP+C S VVR+ A RC+GGL CSAQ+ E ++HF R +IE Sbjct: 431 SPPFELPKSCPVCGSHVVREEGE------AVARCSGGLFCSAQRKEAIRHFAGRRMMDIE 484 Query: 485 GLGKQQLDFFFKSEDPAF---SIRIPADIFTLQRRQQTSTTKIENILG----FGDVSVTN 537 GLG++ +D + E R+ D F +R+ + N Sbjct: 485 GLGERYIDNLVELEYVHGIADLYRLTLDAFLEMKRRADERDGVTPETVAAGKIATKWAEN 544 Query: 538 LYDSINKRRNISLERFIFSLGIRH 561 L I + L RF+F+LGIR Sbjct: 545 LLAGIQASKTPPLARFLFALGIRP 568 >gi|309800924|ref|ZP_07695056.1| DNA ligase (NAD+) [Bifidobacterium dentium JCVIHMP022] gi|308222460|gb|EFO78740.1| DNA ligase (NAD+) [Bifidobacterium dentium JCVIHMP022] Length = 885 Score = 315 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 166/509 (32%), Positives = 258/509 (50%), Gaps = 34/509 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + + +LS E A + + + + YY PI D+ YDA R A+ FP L Sbjct: 61 LDVSSLSAEAAARLWAKVAAWVESDQIAYYIDDAPISSDAAYDARLRCLQALESQFPPL- 119 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 + P P +++GG + V H +SL+ +++IE+LR + + R + + Sbjct: 120 --DTPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVIRDLDWPESKPL 177 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPE 183 T E KIDG + + Y G RGDG +GED++ +R I TIP+ +IPE Sbjct: 178 PMTCEVKIDGLALNLVYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEDDIPE 237 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 +E+RGEV++ +DF ALN E GR P+ANPRNAA+G LR+ +P TR L+F+ HG Sbjct: 238 FVEIRGEVFMRWDDFAALNGENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 297 Query: 243 LGKTSE--------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 +G Q E G PV+ R+ +F I+ + R Sbjct: 298 IGSLRWGAGRADRHDVINHQSEAYALYEKWGVPVSPHNREVTSFTDILDMIDYYGEHRGD 357 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LLDI +Q+GRTG +TP Sbjct: 358 IEHALDGIVVKVDDLGLQRALGATSRAPRWAIAYKYPPEEVNTDLLDITVQVGRTGRVTP 417 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VA L+PV + G+ ++ TLHN ++ + + +GD V+V++AG+VIP++V Sbjct: 418 VAILKPVYVAGSTVSRTTLHNPFEVER-----------KGVLIGDTVVVRKAGDVIPELV 466 Query: 415 DIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 ++ R F P+ CP C + + K RC +C AQ ER Sbjct: 467 GPVLERRKGREESLHAFVMPTHCPSCGAELA-----PAKKGDKDIRCPNVESCPAQLTER 521 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 + + SR AF+IE LG Q E+ Sbjct: 522 IINLASRKAFDIEHLGDQSAIALTNPEED 550 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 49/199 (24%), Positives = 86/199 (43%), Gaps = 28/199 (14%) Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 + + + + D + K R++ L R + +L IR +G AR++A + S Sbjct: 705 QPVYVRPAENTRKMLDEMEKARHVDLWRVLVALSIRRLGPPTARTIATAFGSLDAIEHA- 763 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY---QNPRNIC--AVEALLKEVSPSIGRH 639 L + +G IA+++V ++ P N ++A + Sbjct: 764 ---------SVEELSAIDGIGPEIAESVVTWFTAAHEPGNWRGTVLDAWKTAGVGVVAET 814 Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 ++ + K +V TG+L A LSRKTD ++VG+N GSK Sbjct: 815 N-DLPQTLAGKTVVVTGSLVDFS------------ATPPRSLSRKTDWVVVGENAGSKAA 861 Query: 700 KAQQLGVKIMNEEQFLFLL 718 KA++LG+ ++NE+QF LL Sbjct: 862 KAEELGIPMLNEDQFKQLL 880 >gi|306822599|ref|ZP_07455977.1| NAD-dependent DNA ligase LigA [Bifidobacterium dentium ATCC 27679] gi|304554144|gb|EFM42053.1| NAD-dependent DNA ligase LigA [Bifidobacterium dentium ATCC 27679] Length = 897 Score = 315 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 166/509 (32%), Positives = 258/509 (50%), Gaps = 34/509 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + + +LS E A + + + + YY PI D+ YDA R A+ FP L Sbjct: 61 LDVSSLSAEAAARLWAKVAAWVESDQIAYYIDDAPISSDAAYDARLRCLQALESQFPPL- 119 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 + P P +++GG + V H +SL+ +++IE+LR + + R + + Sbjct: 120 --DTPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVIRDLDWPESKPL 177 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPE 183 T E KIDG + + Y G RGDG +GED++ +R I TIP+ +IPE Sbjct: 178 PMTCEVKIDGLALNLVYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEDDIPE 237 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 +E+RGEV++ +DF ALN E GR P+ANPRNAA+G LR+ +P TR L+F+ HG Sbjct: 238 FVEIRGEVFMRWDDFAALNGENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 297 Query: 243 LGKTSE--------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 +G Q E G PV+ R+ +F I+ + R Sbjct: 298 IGSLRWGAGRADRHDVINHQSEAYALYEKWGVPVSPHNREVTSFTDILDMIDYYGEHRGD 357 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LLDI +Q+GRTG +TP Sbjct: 358 IEHALDGIVVKVDDLGLQRALGATSRAPRWAIAYKYPPEEVNTDLLDITVQVGRTGRVTP 417 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VA L+PV + G+ ++ TLHN ++ + + +GD V+V++AG+VIP++V Sbjct: 418 VAILKPVYVAGSTVSRTTLHNPFEVER-----------KGVLIGDTVVVRKAGDVIPELV 466 Query: 415 DIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 ++ R F P+ CP C + + K RC +C AQ ER Sbjct: 467 GPVLERRKGREESLHAFVMPTHCPSCGAELA-----PAKKGDKDIRCPNVESCPAQLTER 521 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 + + SR AF+IE LG Q E+ Sbjct: 522 IINLASRKAFDIEHLGDQSAIALTNPEED 550 Score = 200 bits (509), Expect = 7e-49, Method: Composition-based stats. Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 16/199 (8%) Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 + + + + D + K R++ L R + +L IR +G AR++A + S Sbjct: 705 QPVYVRPAENTRKMLDEMEKARHVDLWRVLVALSIRRLGPPTARTIATAFGSLDAIEHA- 763 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY---QNPRNIC--AVEALLKEVSPSIGRH 639 L + +G IA+++V ++ P N ++A + Sbjct: 764 ---------SVEELSAIDGIGPEIAESVVTWFTAAHEPGNWRGTVLDAWKTAGVGVVAET 814 Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 ++ + K +V TG+L R A+E + G + +SRKTD ++VG+N GSK Sbjct: 815 N-DLPQTLAGKTVVVTGSLVDFSRDSAKEAIISHGGKAAGSVSRKTDWVVVGENAGSKAA 873 Query: 700 KAQQLGVKIMNEEQFLFLL 718 KA++LG+ ++NE+QF LL Sbjct: 874 KAEELGIPMLNEDQFKQLL 892 >gi|4235372|gb|AAD13189.1| NAD-dependent DNA ligase [Thermus aquaticus] Length = 527 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 185/573 (32%), Positives = 303/573 (52%), Gaps = 49/573 (8%) Query: 63 PDLARSEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 P+L P+ P ++G S V H SL+ ++++++R F RI R +K Sbjct: 1 PELK---SPDSPTEQVGARPLESTFRPVRHPTRMYSLDNAFSLDEVRAFEERIERALGRK 57 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 +T+E K+DG + + YE+G V+ A RGDG +GE+V+ + I TIPR L+ Sbjct: 58 --GPFLYTVEHKVDGLSVNLYYEEGILVFGATRGDGETGEEVTQNLLTIRTIPRRLTGV- 114 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240 P+ +EVRGEVY+ FL LN E+ G + + NPRNAA+G LR+ +P R L Sbjct: 115 PDRLEVRGEVYMPIEAFLRLNQELEEAGERIFKNPRNAAAGSLRQKDPRVTARRGLRATF 174 Query: 241 HGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + LG E K Q+++L ++ GFPV +G +A G+ Y R LP++ Sbjct: 175 YALGLGLEETGLKSQHDLLLWLKERGFPVEHGFTRALGAEGVEEVYQAWLKERRKLPFEA 234 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V K+D+ +L ++LG AR+PR+ +++KF ++ TRLL + Q+GRTG +TPV LE Sbjct: 235 DGVVVKLDDLALWRELGYTARAPRFALAYKFPAEEKETRLLSVAFQVGRTGRITPVGVLE 294 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV I G+ ++ TLHNE +I+ L D+R+GD VLV +AG VIP+V+ ++ Sbjct: 295 PVFIEGSEVSRVTLHNESFIEEL-----------DVRIGDWVLVHKAGGVIPEVLRVLKE 343 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R + +P +P CP C ++++ HRC L C A++ E ++H+ SR Sbjct: 344 RRTGEEKPILWPENCPECGHALLKE--------GKVHRCPNPL-CPAKRFEAIRHYASRK 394 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +I+GLG++ ++ + +R AD++ L++ + ++ G+ S NL Sbjct: 395 AMDIQGLGEKLIEKLLEK----GLVRDVADLYRLRKED------LLDLERMGEKSAENLL 444 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 I + + LER +++LG+ VG +AR+LA + + L+ Sbjct: 445 RQIEESKGRGLERLLYALGLPGVGEVLARNLALRFGHMDRLLEAGLG----------DLL 494 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632 V VG++ A+AI+ ++P V L + Sbjct: 495 EVEGVGELTARAILNTLKDPEFRDLVRRLKEAG 527 >gi|257458169|ref|ZP_05623323.1| DNA ligase, NAD-dependent [Treponema vincentii ATCC 35580] gi|257444463|gb|EEV19552.1| DNA ligase, NAD-dependent [Treponema vincentii ATCC 35580] Length = 641 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 162/715 (22%), Positives = 283/715 (39%), Gaps = 95/715 (13%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 + LE I H + YY ++P I D+++D L ++ +L + + Sbjct: 6 RIQELEALIKKHQNLYYN-AEPEISDADFDMLWDELRSLDPQN-ELFATVPKDS------ 57 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 K H IP S EK + E +K+ ++ F ++ K+DG + Sbjct: 58 ---ADGFPKAEHIIPMGSQEKAADPESFQKWAEKM---------PFTEFLVQYKLDGASM 105 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE------VRGEVYI 193 ++YEKG+ + A RGDG G+D++A ++ + + L + VRGEV + Sbjct: 106 ELQYEKGRLIRAVTRGDGKIGDDITANVKKMQGVVLELKGDSAPTGAAPFSGGVRGEVLM 165 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV------HGLGKTS 247 +K N RNAA+G+++R + + G T Sbjct: 166 TKEVLHRFY--------PDKKNCRNAANGLMKRKDGSGSEHLEIICYDAAAGTIGHPFTE 217 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + E L ++ GF R + ++ Y + IRST+PYDIDGLV K D Sbjct: 218 PAPFTTETEKLNWLKTQGFLQVPVTR-CGSVREVIDYRAHIMDIRSTIPYDIDGLVIKND 276 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + P I+ KF+ ++A T L ++ TP+A ++PV + G Sbjct: 277 LIDIADL---SRARPEKQIAFKFSLEEAITALRSVEWSESGVT-YTPIALIDPVQLAGTT 332 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + A L N + I L ++++G RVLV + GE+IPK+ +I N A+P Sbjct: 333 VKRANLCNPNMIAEL-----------NLKIGSRVLVTKRGEIIPKIEALIENP--ASAKP 379 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 PS C C + + + AC R++ ++ D +I+ G Sbjct: 380 IEQPSRCTSCGTVLRDEG---------TRLYCPNPACPKLIHHRIEKWI--DTLDIQDFG 428 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + F ++ IR +D++TL + + G S +Y +++ +R Sbjct: 429 TTLIKRLFDTQR----IRSVSDLYTLTVEELAAF------ERMGQKSAEKVYRALHAKRE 478 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 I L F+ I +G + L + + + V G Sbjct: 479 IPLPVFVAGFDIEGIGRTMMEKLVDAGFDTLEKLLAASE----------EDFAAVYQFGS 528 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHK 665 ++A + + + L I + + K FTG L ++R + Sbjct: 529 VLAHTLTAGLRE--VKDEMLRLTGSGIIVIQPPVSAQENLPLAGKSFCFTGELNSLKRKE 586 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ V Q G V + +++ ++ D+ SK +KAQ+LG I+ EE+FL LL Sbjct: 587 AEAMVQQKGGTVKSSVTKGLTYLVTNTPDSGSSKNKKAQELGTVIITEEEFLKLL 641 >gi|219882959|ref|YP_002478123.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6] gi|254778150|sp|B8HIQ9|DNLJ2_ARTCA RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 2 gi|219861965|gb|ACL42306.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6] Length = 701 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 170/726 (23%), Positives = 302/726 (41%), Gaps = 87/726 (11%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF---PDLARSEDPNGP 74 +E + Y + D+E+D L + + A P+ + Sbjct: 37 EEEYQAAVTTALSAAKAYETTDVEEMNDAEFDRLLAKIASHEAANGIEPEHDLHDTI--- 93 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 G V H+ P SLEK + + +F + + +EPKI Sbjct: 94 -----GHGGAGGGDVEHATPMKSLEKP-GEDAVIEFAAKHPKA-----------VIEPKI 136 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I++RYE GK V AA RGDG++GEDV+ +R + +P + EVRGE+Y++ Sbjct: 137 DGLAISVRYENGKMVRAARRGDGYTGEDVTDRVRGVDGLPEMAGD---GDYEVRGELYLN 193 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 + N A G+ P+AN RN +G+L + + + + F + T+ Sbjct: 194 DENKAKANAIRQAAGKAPFANARNGVAGMLNKQDGSYAGLFS-FAAYS---TTIDEKADH 249 Query: 255 YEMLQKMRCLGFPVNNG--VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 + +Q++ +GF + ++ + + R L + +DG V KV+ + + Sbjct: 250 LDSMQQLEGMGFTTARSLLPQSVLDAEDPMAAIAALGAERKGLNFLMDGAVLKVNTAAER 309 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LGE +R+P+W +++K+ + T + DI+ IG+TG L+ ARL PV + G+++ A+ Sbjct: 310 AELGEGSRAPKWAVAYKYPAVEEPTVIEDIEYNIGKTGRLSIRARLTPVEVDGSVVEYAS 369 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN +++ D+R+GD V +A ++IP+V + R +QP+ PS Sbjct: 370 LHNVGHLQ-----------AADMRIGDTVSAYKANDIIPQVHLPRADLRDESSQPWQPPS 418 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + K RC + ++ +IEGLG D Sbjct: 419 VCPQC--------SEPFDKSTELWRCHTPECSVSGRISYA--ASRDAGLDIEGLGGSIGD 468 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG----DVSVTNLYDSINKRRNI 548 + + ++ +D+F L Q E G + + I K ++ Sbjct: 469 ALIEKD----LVKDVSDLFYLGEDQLAEVELGETSTGGTRTLGQKNAAKIMAEIEKAKSQ 524 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L R I +L +R G R LA + + + L V +G Sbjct: 525 PLNRVITALSMRFTGRTFGRRLAAEFGTMEALQAAT----------VSQLANVEGIGQKK 574 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-------SEIENK--KLVFTGT-- 657 A+ I E Q +N + L + + ++ + K +V TG+ Sbjct: 575 AEVIHE--QLKKNAPVIAKLREAGVNMGAPKAAPAAGAKAPKLTKPDGKPMNVVVTGSVK 632 Query: 658 ---LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 L + R QE + G S +S+ TD+++ G+ SK KAQ+LG++I+ ++F Sbjct: 633 GSPLGSLSRSGVQELIEAKGGKASGSVSKTTDLLVCGEPGSSKFLKAQELGIRIVTPDEF 692 Query: 715 LFLLQQ 720 +++ Sbjct: 693 AQMVED 698 >gi|154507531|ref|ZP_02043173.1| hypothetical protein ACTODO_00010 [Actinomyces odontolyticus ATCC 17982] gi|153799320|gb|EDN81740.1| hypothetical protein ACTODO_00010 [Actinomyces odontolyticus ATCC 17982] Length = 777 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 162/500 (32%), Positives = 257/500 (51%), Gaps = 27/500 (5%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 + P+ + E R + L I+ YY P + D++YD + R + I +P L Sbjct: 1 MDPMADSTFETTRDRYNDLVDRINEARAAYYDRDSPTLADADYDRMYREVEEIEERYPQL 60 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 + + P +GG ++ +V H +SL+ ++++E+L + TR+ D Sbjct: 61 RGA---DSPTMSVGGSVDSGFSEVRHLAQMMSLDDVFSLEELAGWETRMAEATGISD--- 114 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + T E K+DG I + YE G+ V AA RGDG+ GEDV+A R I +IP+ LS +P I Sbjct: 115 LEMTTEVKVDGLSINLLYENGRLVRAATRGDGYVGEDVTANARTIASIPQTLSGTVPTRI 174 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG 244 EVRGEVY DF A N+ + G K + N RNAA+G LR+ +P + R L HG+G Sbjct: 175 EVRGEVYFPVADFAAFNEARVEAGEKTFVNARNAAAGSLRQKDPAETAKRPLAMVAHGIG 234 Query: 245 KT----SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 Q +++R G PV+ R I E+ R L ++ID Sbjct: 235 FVEAGEDFTEPITQMGWYEQLRDWGLPVSPYTRVLTGRKAIEERIAELGEKRHDLEHEID 294 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V K+++ LQ+ LG +R+PRW ++KF ++ TRLLDI +Q+GRTG +TP +E Sbjct: 295 GVVVKINDLDLQRSLGSTSRTPRWAAAYKFPPEEVHTRLLDIRVQVGRTGRVTPYGVMES 354 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V + G+ + ATLHN + + + +GD V++++AG+VIP++V + + Sbjct: 355 VLVAGSNVARATLHNAQEVAR-----------KGVLIGDLVVLRKAGDVIPEIVAPVEDA 403 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R+ +PF P+ CP C + +V++ + RC C AQ ERL H +R A Sbjct: 404 RNGSERPFVMPTECPSCGTTLVQE-----KEGDVDLRCPNKGLCPAQITERLAHVGARSA 458 Query: 481 FNIEGLGKQQLDFFFKSEDP 500 ++EGLG + + E+ Sbjct: 459 LDVEGLGDESALAMTQPEND 478 Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 10/204 (4%) Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575 R+ T E I + + K ++ L R + +L IRHVG AR+LA+ +L Sbjct: 576 RKLRGQTVFEPIEPTASKGTEKMLVELEKAKSQPLARVLVALSIRHVGPTAARALAEKFL 635 Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635 S L V VG+ I +++ +++ ++ ++A + Sbjct: 636 SMDALRAA----------SVEELSAVEGVGEEIGRSLRDWFTVDWHLEVLQAWARAGVRM 685 Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695 + S + +V +G + R A+E +T G +S+KT +++ G G Sbjct: 686 ADEAPEPTSDVLAGLTVVVSGAMPGYDREGAKEAITSRGGKAVGSVSKKTSLVVAGPGAG 745 Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719 SK KA+ LGV ++ E+QF LL+ Sbjct: 746 SKAAKAEALGVPVITEQQFTDLLE 769 >gi|254673676|emb|CBA09270.1| DNA ligase [Neisseria meningitidis alpha275] Length = 423 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 154/410 (37%), Positives = 230/410 (56%), Gaps = 30/410 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + + L ++ + YY P + D+EYD L R +A+ P+L P+ P Sbjct: 26 AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQ 82 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127 ++GGE +V H +P LSL ++ + ++ F R+ D + Sbjct: 83 RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPE 139 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186 + +EPK DG I++ Y G + AA RGDG +GEDV+ I+ + IP L PE+IE Sbjct: 140 YVIEPKFDGLAISLLYRDGVLIQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245 VRGEV + K DF ALN G+KP+ANPRNAA+G LR+L+ R L+FF + + + Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259 Query: 246 TS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTF-HGIVSYYNEMKSIRSTLPYDIDGLV 303 A+ + L + LGF + NG ++++Y M+ R LPY+IDG+V Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYGHMQQKRPELPYEIDGMV 319 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV+ + Q +LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV + Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+V Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEV 418 >gi|311747945|ref|ZP_07721730.1| DNA ligase, NAD-dependent [Algoriphagus sp. PR1] gi|126574918|gb|EAZ79276.1| DNA ligase, NAD-dependent [Algoriphagus sp. PR1] Length = 791 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 165/563 (29%), Positives = 269/563 (47%), Gaps = 28/563 (4%) Query: 38 YSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLS 97 + +I D E+D L + FPDL + P+ P ++GG + V H+ LS Sbjct: 2 EDQAVISDFEFDKLLEELVQLETEFPDLLQ---PDSPSQRVGGTITKEFETVVHAYKMLS 58 Query: 98 LEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157 L ++ E+L F R+ + N + E K DG I++ YE GK V A RGDG Sbjct: 59 LGNTYSKEELIAFDERVQKGLG---GNPYEYFCEMKFDGVAISLVYENGKLVRAVTRGDG 115 Query: 158 HSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANP 216 G+DV+A +R I IP + + IPE EVRGE+++ +F +N E G ANP Sbjct: 116 TRGDDVTANVRTIRNIPLYVKGDKIPERFEVRGEIFLPHREFEKINAERNENGEALMANP 175 Query: 217 RNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQAN 276 RNAASG L+ + + + + +I E + + GF V+ R+ N Sbjct: 176 RNAASGTLKMQDSSVVAKRRLNCYFYQLLGEDIGVNAHDEAISLIESWGFNVSPTYRKTN 235 Query: 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAS 336 T +++Y + + R TLP D DG+V K++++ +++LG A++PRW I++K+ + + Sbjct: 236 TIEDVLTYIEDWREKRFTLPLDTDGVVLKINDYEQREELGFTAKNPRWAIAYKYKAESSE 295 Query: 337 TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIR 396 T LL + Q+GRTG +TPVA L PV++ G + A+LHN + I+ L + Sbjct: 296 TELLSVTYQVGRTGAITPVANLAPVSLAGTTVKRASLHNANEIERL-----------GLH 344 Query: 397 VGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456 GD V V++ GE+IPK+ + + +R PD++P + S CP C + + R A H Sbjct: 345 TGDVVFVEKGGEIIPKITGVSLEQRKPDSKPIEYISECPECGTPLERKEGE------AKH 398 Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516 C C Q L R++HFV + A +I+ LG +++ I+ PADI+ L+ + Sbjct: 399 FCPNASNCPPQVLGRIEHFVHKRAMDIDSLGTERIRALIDQ----GFIQNPADIYDLESK 454 Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576 Q + + L+ + K E+ F + A L + + Sbjct: 455 QSDLLGLEMSQDQYELEGTGLLFVKLEKALFALTEQISFKQISDWLAANTELPLFEKLKA 514 Query: 577 YQNFAQEINNIIAHNNDDWLSLI 599 +Q ++ + N LI Sbjct: 515 FQEQIRKWKKKVPANTGMVDYLI 537 Score = 188 bits (476), Expect = 4e-45, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 114/244 (46%), Gaps = 14/244 (5%) Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ-TSTTKIENILGFGDVSVTNLY 539 I + Q + ++ ++ L+ Q+ K F + ++N+ Sbjct: 558 LEIFLGRRIQFEAILEASKRHGTVHRILLDLDLELSQELRERIKKLKANTFQEGVISNMM 617 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 + I + E+ +F+LG+R++G A LA+++ S + L+ Sbjct: 618 EGIAASKKQPFEKVLFALGVRNIGENTAALLAQHFGSIDKLNEA----------STEELL 667 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGT 657 + VG+ + Q+I EF+ N+ + L K + VS + +E KK++ +G Sbjct: 668 EINGVGETLVQSIHEFFSRQENLDIISRLKKSGLQFDAEQIETVSLGNALEGKKILASGK 727 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLF 716 L + +R + +++ G + +S+K D II G++ G SK EKAQ+LG+ +++EE FL Sbjct: 728 LNQFKRDEIVDFIKSHGGQYVSSVSKKLDFIIEGEDMGPSKKEKAQKLGIPLISEEDFLK 787 Query: 717 LLQQ 720 +L++ Sbjct: 788 MLEE 791 >gi|224282769|ref|ZP_03646091.1| LigA [Bifidobacterium bifidum NCIMB 41171] gi|313139930|ref|ZP_07802123.1| LigA [Bifidobacterium bifidum NCIMB 41171] gi|313132440|gb|EFR50057.1| LigA [Bifidobacterium bifidum NCIMB 41171] Length = 900 Score = 314 bits (804), Expect = 4e-83, Method: Composition-based stats. Identities = 167/509 (32%), Positives = 258/509 (50%), Gaps = 35/509 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + + +LS E A + + + + YY P+ D+ YDA R + FP L Sbjct: 62 LDVSSLSNEVAARLWARVAAWVEADQIAYYIDDAPVSSDAAYDARLRCLQRLEAEFPSL- 120 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 + P P +++GG + V H +SL+ +++IE+LR + + R + + Sbjct: 121 --DSPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVLRDLDWPEGKPL 178 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPE 183 T E KIDG + + Y G RGDG +GED++ +R I +IP L IPE Sbjct: 179 PMTCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPAADIPE 238 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 +E+RGEV++ +DF ALN E GR P+ANPRNAA+G LR+ +P TR L+F+ HG Sbjct: 239 FVEIRGEVFMRWDDFKALNGEQEDAGRPPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 298 Query: 243 LGKTSE---------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293 +G Q E G PV+ R+ +F I+ + R Sbjct: 299 IGTLRWGSGRPAGSHDVVADQSEAYTLYSKWGVPVSPHNREVTSFAQILDMIDYYGEHRG 358 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LLDI +Q+GRTG +T Sbjct: 359 DIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVT 418 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 PVA L+PV + G+ ++ TLHN +K + + +GD V+V++AG+VIP++ Sbjct: 419 PVAVLKPVYVAGSTVSRTTLHNPFEVKR-----------KGVLIGDTVVVRKAGDVIPEL 467 Query: 414 VDIIVNERHP---DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 V +V R D + F P CP C S++ + RC +C AQ E Sbjct: 468 VGPVVERRKGREDDLREFVMPDRCPSCGSKLA-----PAKEGDKDIRCPNVESCPAQLTE 522 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 R+ + SR AF+IE LG Q E+ Sbjct: 523 RIINLASRKAFDIEHLGDQSAIALTNPEE 551 Score = 205 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 51/214 (23%), Positives = 96/214 (44%), Gaps = 15/214 (7%) Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 + R+ + T + + ++D ++K R+ L R + +L IR +G AR + Sbjct: 692 VRVDRKTTRNGTVDVPVYVRPGENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLI 751 Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI-----CAV 625 A + S + Q L + +G IA+++V ++ R + Sbjct: 752 ASAFGSLEAIEQA----------GVDELSAIDGIGPEIAESVVNWFAAAREPRDWRGETL 801 Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 A + + K +V TG+L+ R A+E + + G + +S+KT Sbjct: 802 RAWQAAGVGVAAAETSTLPQTLAGKTVVVTGSLEGFSRDSAKEAIIERGGKAAGSVSKKT 861 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 D ++VG+N GSK KA++LG+ +++E QF LL+ Sbjct: 862 DWVVVGENAGSKAAKAEELGIPMLDEAQFRTLLE 895 >gi|311064086|ref|YP_003970811.1| NAD-dependent DNA ligase [Bifidobacterium bifidum PRL2010] gi|310866405|gb|ADP35774.1| LigA NAD-dependent DNA ligase [Bifidobacterium bifidum PRL2010] Length = 896 Score = 314 bits (803), Expect = 4e-83, Method: Composition-based stats. Identities = 166/509 (32%), Positives = 258/509 (50%), Gaps = 35/509 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + + +LS E A + + + + YY P+ D+ YDA R + FP L Sbjct: 62 LDVSSLSNEVAARLWARVAAWVEADQIAYYIDDAPVSSDAAYDARLRCLQRLEAEFPSL- 120 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 + P P +++GG + V H +SL+ +++IE+LR + + R + + Sbjct: 121 --DSPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVLRDLDWPEGKPL 178 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPE 183 T E KIDG + + Y G RGDG +GED++ +R I +IP L IPE Sbjct: 179 PMTCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPAADIPE 238 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 +E+RGEV++ +DF ALN E GR P+ANPRNAA+G LR+ +P TR L+F+ HG Sbjct: 239 FVEIRGEVFMRWDDFKALNGEQEDAGRPPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 298 Query: 243 LGKTSE---------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293 +G Q E G PV+ R+ +F I+ + R Sbjct: 299 IGTLRWGSGRPAGSHDVVADQSEAYTLYSKWGVPVSPHNREVTSFAQILDMIDYYGEHRG 358 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LLD+ +Q+GRTG +T Sbjct: 359 DIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDVTVQVGRTGRVT 418 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 PVA L+PV + G+ ++ TLHN +K + + +GD V+V++AG+VIP++ Sbjct: 419 PVAVLKPVYVAGSTVSRTTLHNPFEVKR-----------KGVLIGDTVVVRKAGDVIPEL 467 Query: 414 VDIIVNERHP---DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 V +V R D + F P CP C S++ + RC +C AQ E Sbjct: 468 VGPVVERRKGREDDLREFVMPDRCPSCGSKLA-----PAKEGDKDIRCPNVESCPAQLTE 522 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 R+ + SR AF+IE LG Q E+ Sbjct: 523 RIINLASRKAFDIEHLGDQSAIALTNPEE 551 Score = 206 bits (523), Expect = 2e-50, Method: Composition-based stats. Identities = 56/281 (19%), Positives = 112/281 (39%), Gaps = 15/281 (5%) Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503 +++ R + S + + + +Q P + Sbjct: 621 EIHETVTADGKTKRTRKRIGGSGLWHQVPAFWTAPTPAKKLSARRQAAADAAAEPYPGYD 680 Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563 + A + + R+ + T + + ++D ++K R+ L R + +L IR +G Sbjct: 681 VPADAVVVRVDRKTTRNGTVDVPVYVRPGENTRKMFDEMDKARHADLWRVLVALSIRRLG 740 Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI- 622 AR +A + S + Q L + +G IA+++V ++ R Sbjct: 741 PPTARLIASAFGSLEAIEQA----------GVDELSAIDGIGPEIAESVVNWFAAAREPR 790 Query: 623 ----CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 + A + + K +V TG+L+ R A+E + + G + Sbjct: 791 DWRGETLRAWQAAGVGVAAAETSTLPQTLAGKTVVVTGSLEGFSRDSAKEAIIERGGKAA 850 Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +S+KTD ++VG+N GSK KA++LG+ +++E QF LL+ Sbjct: 851 GSVSKKTDWVVVGENAGSKAAKAEELGIPMLDEAQFRTLLE 891 >gi|229817979|ref|ZP_04448261.1| hypothetical protein BIFANG_03266 [Bifidobacterium angulatum DSM 20098] gi|229784583|gb|EEP20697.1| hypothetical protein BIFANG_03266 [Bifidobacterium angulatum DSM 20098] Length = 927 Score = 314 bits (803), Expect = 5e-83, Method: Composition-based stats. Identities = 159/507 (31%), Positives = 256/507 (50%), Gaps = 33/507 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + + + + A + + L + YY P+ D+ YDA R + AFP L Sbjct: 70 LDVSGMEADTAARLWAKLAAWVESDQIAYYIDDAPVSSDAAYDARLRCLQRLEAAFPTL- 128 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 ++P P ++GG + V H +SL+ +++IE+L + + R + + Sbjct: 129 --DNPQSPTRRVGGTFSNDFVSVRHPSRMMSLDDVFSIEELHDWYDGVLRGLDWPEGKPL 186 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPE 183 + E KIDG + + Y G RGDG +GED++ +R I TIP + +IP+ Sbjct: 187 PMSCEVKIDGLALNLIYRHGVLEQGLTRGDGVTGEDITLNVRTIGTIPANLAGPTEDIPD 246 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 +E+RGEV++ +DF LNDE GR+P+ANPRNAA+G LR+ +P TR L+F+ HG Sbjct: 247 FVEIRGEVFMRWDDFRRLNDEQEDAGREPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 306 Query: 243 L-------GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295 + G Q E + G PV+ R +F ++ + R + Sbjct: 307 IGRLEWGAGHAGHDEINDQSEAYELYTKWGVPVSPHNRTVASFAEVLDMIDYYGEHRGDI 366 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 + +DG+V KVD+ +LQ+ LG +R+PRW I++K+ ++ +T LLDI +Q+GRTG +TPV Sbjct: 367 EHALDGIVVKVDDLALQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVTPV 426 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 A L+PV++ G+ + TLHN +K + I +GD V+V++AG+VIP++V Sbjct: 427 AMLKPVHVAGSTVARTTLHNPFEVKR-----------KGILIGDTVVVRKAGDVIPELVG 475 Query: 416 IIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472 ++ R + F P CP C +++ + RC +C AQ ER+ Sbjct: 476 PVLERRKGRESELREFVMPEHCPSCGAKLA-----PAKEGDKDIRCPNVESCPAQLTERV 530 Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKSED 499 R AF+IE LG Q E+ Sbjct: 531 ISLGMRKAFDIEHLGDQSAIALTNPEE 557 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 16/205 (7%) Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 I+ + + + I+K + L R + +L IR +G AR +A S ++ Sbjct: 718 PIIVKPAENTRKMLEEIDKAKQADLWRVLVALSIRRLGPPTARLIASAMGSLDAISKA-- 775 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI-----CAVEALLKEVSPSIGRHE 640 L ++ VG IA+++V ++ R + A + Sbjct: 776 --------SVDDLTQIDGVGPEIAESVVHWFAAAREPGDWRGQTLTAWRAAGVGVGEAAK 827 Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700 ++ + K +V TG+L+ R A+E + + G + +S+KTD +++G N GSK K Sbjct: 828 SSLPQTLAGKTVVVTGSLEGFSRDSAKEAIMERGGKAAGSVSKKTDYVVIGANAGSKAAK 887 Query: 701 AQQLGVKIMNEEQFLFLLQ-QYNTT 724 A++LG+ +++E QF LL +Y Sbjct: 888 AEELGIPMLDEAQFELLLAGEYGAD 912 >gi|319760626|ref|YP_004124564.1| DNA ligase [Candidatus Blochmannia vafer str. BVAF] gi|318039340|gb|ADV33890.1| DNA ligase [Candidatus Blochmannia vafer str. BVAF] Length = 598 Score = 314 bits (803), Expect = 5e-83, Method: Composition-based stats. Identities = 204/609 (33%), Positives = 319/609 (52%), Gaps = 46/609 (7%) Query: 30 YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89 + YY ++ D EYD + + +P L N P +G + + +V Sbjct: 17 QWEYAYYLKNESETSDEEYDKTLQELRQLEFEYPCLI---TENSPTKFLGKILENNFRQV 73 Query: 90 THSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148 H P LSL + N L F RI + + SI + E KIDG I++ Y+ GK Sbjct: 74 YHRAPMLSLNSVMNKSQLLLFNDRIEYKLRDNNQNKSIIYCCELKIDGVAISLLYKSGKL 133 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRGEVYISKNDFLALNDE 204 + AA RGDG GEDV+ +R + +IP L N P ++E+RGE++ISK FL LN + Sbjct: 134 LKAATRGDGKIGEDVTKNVRVVSSIPECLRKNDGMQLPYLLEIRGEIFISKLCFLKLNQK 193 Query: 205 MIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK--TSEIFAKGQYEMLQKM 261 ++ G KP++N RNAASG LR+LNP +R L F+ +G+ ++ ++ LQ Sbjct: 194 ILKSGNKPFSNARNAASGSLRQLNPNITASRSLMFYCYGISYYVGADELPNSHWDRLQLC 253 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 LG P+N+ ++ N ++ YY+ + IRS L YDIDG+V KVD QK+LG R+ Sbjct: 254 LKLGIPINDHIQLVNGVDKVLKYYDHITYIRSNLKYDIDGIVVKVDNCVFQKKLGYGTRA 313 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 P W I++KF + T+L DI ++GRTG++TP+ ++P+ I +I ++HN + I+ Sbjct: 314 PHWAIAYKFPAESKLTQLNDIIFKVGRTGLITPIVYIKPIVINNVVIKKVSMHNVNEIRR 373 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 ++ GD VLV+R+G+VIPK+V +I+++R D + + P FCP+C + + Sbjct: 374 F-----------NLMFGDTVLVQRSGDVIPKIVKVILSKRTNDMKVITLPQFCPVCGTLL 422 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 + + RC L C AQ+ LKHFVSR A NI G+G++ ++ Sbjct: 423 ITSNC-----RSSVLRCPAKLICLAQRKSMLKHFVSRKAMNIHGMGEKVINQLVDKN--- 474 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 + P D F L R + N+ G+G SV L SI+ ++ +L FI++LGI + Sbjct: 475 -LVFSPVDFFYLNRE-----NLLFNLDGYGVKSVEKLLRSIDLAKHTTLANFIYALGIPN 528 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 VG +A SLA Y + + D+ SL + VGD IA I F+++P N Sbjct: 529 VGESVANSLAVKYKTIEKLISA----------DFQSLSTLQYVGDSIAFTIYSFFKDPIN 578 Query: 622 ICAVEALLK 630 + ++ L+ Sbjct: 579 LKNIKDLIN 587 >gi|317481657|ref|ZP_07940691.1| DNA ligase [Bifidobacterium sp. 12_1_47BFAA] gi|316916889|gb|EFV38277.1| DNA ligase [Bifidobacterium sp. 12_1_47BFAA] Length = 920 Score = 314 bits (803), Expect = 5e-83, Method: Composition-based stats. Identities = 158/508 (31%), Positives = 256/508 (50%), Gaps = 35/508 (6%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 + ++ E A + + + + YY P+ D+ YDA R + + AFP L Sbjct: 53 DVNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL-- 110 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 ++P P +++GG + V H +SL+ +++IE+L+ + + R + + Sbjct: 111 -DNPQSPTHRVGGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLP 169 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--- 184 + E KIDG + + Y G RGDG +GED++ +R I +IP L ++ Sbjct: 170 MSCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLVGPKEDVPDF 229 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +E+RGEV++ +DF LN+E GR P+ANPRNAA+G LR+ +P TR L+F+ HGL Sbjct: 230 VEIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGL 289 Query: 244 GKTSEIFAKG---------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 G+ + Q + G PV+ R +F I+ R Sbjct: 290 GQLTWGPDHPRGTHDVVADQSQAYDLYTKWGVPVSPHNRAVTSFQEILDMIEYYGEHRGD 349 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LL+I +Q+GRTG +TP Sbjct: 350 IEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTP 409 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VA L+PV + G+ + TLHN +K + I +GD V+V++AG+VIP++V Sbjct: 410 VAVLKPVYVAGSTVARTTLHNGFEVKR-----------KGILIGDTVVVRKAGDVIPELV 458 Query: 415 DIIVNERHPDAQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 ++ R F P FCP C +++ + RC +C AQ ER Sbjct: 459 GPVLERRKGREDQLREFVMPEFCPSCGAKL-----SPAKEGDKDIRCPNVESCPAQLTER 513 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSED 499 + SR AF+IE LG+Q E+ Sbjct: 514 VISLASRKAFDIEHLGEQSAIALTNPEE 541 Score = 200 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 15/192 (7%) Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592 + ++D ++K R+ L R + +L IR +G AR +A S Sbjct: 735 ENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLIASAMGSLAAIENAT-------- 786 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQN-----PRNICAVEALLKEVSPSIGRHEKNVSSEI 647 L + VG IA+++V ++ + A ++ + Sbjct: 787 --IEDLTAIDGVGPEIAESVVNWFAATREPGDWRGATLRAWQAAGVGVDEAETSSLPQTL 844 Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 K +V TG+L+ R A+E + + G + +S+KTD +++G N GSK KA++LG+ Sbjct: 845 AGKTVVVTGSLEGYSRDSAKEAIIERGGKAAGSVSKKTDYVVIGANAGSKAAKAEELGIP 904 Query: 708 IMNEEQFLFLLQ 719 +++E QF LL Sbjct: 905 MLSETQFAQLLA 916 >gi|322689624|ref|YP_004209358.1| DNA ligase [Bifidobacterium longum subsp. infantis 157F] gi|322691585|ref|YP_004221155.1| DNA ligase [Bifidobacterium longum subsp. longum JCM 1217] gi|291516189|emb|CBK69805.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. longum F8] gi|320456441|dbj|BAJ67063.1| DNA ligase [Bifidobacterium longum subsp. longum JCM 1217] gi|320460960|dbj|BAJ71580.1| DNA ligase [Bifidobacterium longum subsp. infantis 157F] Length = 920 Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats. Identities = 158/508 (31%), Positives = 257/508 (50%), Gaps = 35/508 (6%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 + ++ E A + + + + YY P+ D+ YDA R + + AFP L Sbjct: 53 DVNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL-- 110 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 ++P P +++GG + V H +SL+ +++IE+L+ + + R + + Sbjct: 111 -DNPQSPTHRVGGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLP 169 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPEI 184 + E KIDG + + Y G RGDG +GED++ +R I +IP ++P+ Sbjct: 170 MSCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDF 229 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +E+RGEV++ +DF LN+E GR P+ANPRNAA+G LR+ +P TR L+F+ HGL Sbjct: 230 VEIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGL 289 Query: 244 GKTSEIFAKG---------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 G+ + Q + G PV+ R +F I+ R Sbjct: 290 GQLTWGPDHPRGTHDVVADQSQAYDLYTKWGVPVSPHNRAVTSFQEILDMIEYYGEHRGD 349 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LL+I +Q+GRTG +TP Sbjct: 350 IEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTP 409 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VA L+PV + G+ + TLHN +K + I +GD V+V++AG+VIP++V Sbjct: 410 VAVLKPVYVAGSTVARTTLHNGFEVKR-----------KGILIGDTVVVRKAGDVIPELV 458 Query: 415 DIIVNERHPDAQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 ++ R F P FCP C +++ + RC +C AQ ER Sbjct: 459 GPVLERRKGREDQLREFVMPEFCPSCGAKL-----SPAKEGDKDIRCPNVESCPAQLTER 513 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSED 499 + SR AF+IE LG+Q E+ Sbjct: 514 VISLASRKAFDIEHLGEQSAIALTNPEE 541 Score = 200 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 15/192 (7%) Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592 + ++D ++K R+ L R + +L IR +G AR +A S Sbjct: 735 ENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLIASAMGSLAAIENAT-------- 786 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQN-----PRNICAVEALLKEVSPSIGRHEKNVSSEI 647 L + VG IA+++V ++ + A ++ + Sbjct: 787 --IEDLTAIDGVGPEIAESVVNWFAATREPGDWRGATLRAWQAAGVGVDEAETSSLPQTL 844 Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 K +V TG+L+ R A+E + + G + +S+KTD +++G N GSK KA++LG+ Sbjct: 845 AGKTVVVTGSLEGYSRDSAKEAIIERGGKAAGSVSKKTDYVVIGANAGSKAAKAEELGIP 904 Query: 708 IMNEEQFLFLLQ 719 +++E QF LL Sbjct: 905 MLSETQFAQLLA 916 >gi|239620760|ref|ZP_04663791.1| LigA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132368|ref|YP_003999707.1| lig [Bifidobacterium longum subsp. longum BBMN68] gi|239516336|gb|EEQ56203.1| LigA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311772424|gb|ADQ01912.1| Lig [Bifidobacterium longum subsp. longum BBMN68] Length = 920 Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats. Identities = 158/508 (31%), Positives = 257/508 (50%), Gaps = 35/508 (6%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 + ++ E A + + + + YY P+ D+ YDA R + + AFP L Sbjct: 53 DVNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL-- 110 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 ++P P +++GG + V H +SL+ +++IE+L+ + + R + + Sbjct: 111 -DNPQSPTHRVGGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLP 169 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPEI 184 + E KIDG + + Y G RGDG +GED++ +R I +IP ++P+ Sbjct: 170 MSCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDF 229 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +E+RGEV++ +DF LN+E GR P+ANPRNAA+G LR+ +P TR L+F+ HGL Sbjct: 230 VEIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGL 289 Query: 244 GKTSEIFAKG---------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 G+ + Q + G PV+ R +F I+ R Sbjct: 290 GQLTWGPDHPRGTHDVVADQSQAYDLYTKWGVPVSPHNRAVTSFQEILDMIEYYGEHRGD 349 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LL+I +Q+GRTG +TP Sbjct: 350 IEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTP 409 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VA L+PV + G+ + TLHN +K + I +GD V+V++AG+VIP++V Sbjct: 410 VAVLKPVYVAGSTVARTTLHNGFEVKR-----------KGILIGDTVVVRKAGDVIPELV 458 Query: 415 DIIVNERHPDAQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 ++ R F P FCP C +++ + RC +C AQ ER Sbjct: 459 GPVLERRKGREDQLREFVMPEFCPSCGAKL-----SPAKEGDKDIRCPNVESCPAQLTER 513 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSED 499 + SR AF+IE LG+Q E+ Sbjct: 514 VISLASRKAFDIEHLGEQSAIALTNPEE 541 Score = 200 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 15/192 (7%) Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592 + ++D ++K R+ L R + +L IR +G AR +A S Sbjct: 735 ENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLIASAMGSLAAIENAT-------- 786 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQN-----PRNICAVEALLKEVSPSIGRHEKNVSSEI 647 L + VG IA+++V ++ + A ++ + Sbjct: 787 --IEDLTAIDGVGPEIAESVVNWFAATREPGDWRGATLRAWQAAGVGVDEAETSSLPQTL 844 Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 K +V TG+L+ R A+E + + G + +S+KTD +++G N GSK KA++LG+ Sbjct: 845 AGKTVVVTGSLEGYSRDSAKEAIIERGGKAAGSVSKKTDYVVIGANAGSKAAKAEELGIP 904 Query: 708 IMNEEQFLFLLQ 719 +++E QF LL Sbjct: 905 MLSETQFAQLLA 916 >gi|23464680|ref|NP_695283.1| LigA [Bifidobacterium longum NCC2705] gi|81754681|sp|Q8G830|DNLJ_BIFLO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|23325242|gb|AAN23919.1| LigA [Bifidobacterium longum NCC2705] Length = 920 Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats. Identities = 158/508 (31%), Positives = 257/508 (50%), Gaps = 35/508 (6%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 + ++ E A + + + + YY P+ D+ YDA R + + AFP L Sbjct: 53 DVNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL-- 110 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 ++P P +++GG + V H +SL+ +++IE+L+ + + R + + Sbjct: 111 -DNPQSPTHRVGGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLP 169 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPEI 184 + E KIDG + + Y G RGDG +GED++ +R I +IP ++P+ Sbjct: 170 MSCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDF 229 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +E+RGEV++ +DF LN+E GR P+ANPRNAA+G LR+ +P TR L+F+ HGL Sbjct: 230 VEIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGL 289 Query: 244 GKTSEIFAKG---------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 G+ + Q + G PV+ R +F I+ R Sbjct: 290 GQLTWGPDHPRGTHDVVADQSQAYDLYTKWGVPVSPHNRAVTSFQEILDMIEYYGEHRGD 349 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LL+I +Q+GRTG +TP Sbjct: 350 IEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTP 409 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VA L+PV + G+ + TLHN +K + I +GD V+V++AG+VIP++V Sbjct: 410 VAVLKPVYVAGSTVARTTLHNGFEVKR-----------KGILIGDTVVVRKAGDVIPELV 458 Query: 415 DIIVNERHPDAQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 ++ R F P FCP C +++ + RC +C AQ ER Sbjct: 459 GPVLERRKGREDQLREFVMPEFCPSCGAKL-----SPAKEGDKDIRCPNVESCPAQLTER 513 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSED 499 + SR AF+IE LG+Q E+ Sbjct: 514 VISLASRKAFDIEHLGEQSAIALTNPEE 541 Score = 200 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 15/192 (7%) Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592 + ++D ++K R+ L R + +L IR +G AR +A S Sbjct: 735 ENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLIASAMGSLAAIENAT-------- 786 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQN-----PRNICAVEALLKEVSPSIGRHEKNVSSEI 647 L + VG IA+++V ++ + A ++ + Sbjct: 787 --IEDLTAIDGVGPEIAESVVNWFAATREPGDWRGATLRAWQAAGVGVDEAETSSLPQTL 844 Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 K +V TG+L+ R A+E + + G + +S+KTD +++G N GSK KA++LG+ Sbjct: 845 AGKTVVVTGSLEGYSRDSAKEAIIERGGKAAGSVSKKTDYVVIGANAGSKAAKAEELGIP 904 Query: 708 IMNEEQFLFLLQ 719 +++E QF LL Sbjct: 905 MLSETQFAQLLA 916 >gi|310287227|ref|YP_003938485.1| NAD-dependent DNA ligase [Bifidobacterium bifidum S17] gi|309251163|gb|ADO52911.1| NAD-dependent DNA ligase [Bifidobacterium bifidum S17] Length = 900 Score = 313 bits (802), Expect = 6e-83, Method: Composition-based stats. Identities = 167/509 (32%), Positives = 258/509 (50%), Gaps = 35/509 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + + +LS E A + + + + YY P+ D+ YDA R + FP L Sbjct: 62 LDVSSLSNEVAARLWARVAAWVEADQIAYYIDDAPVSSDAAYDARLRCLQRLEAEFPSL- 120 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 + P P +++GG + V H +SL+ +++IE+LR + + R + + Sbjct: 121 --DSPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVLRDLDWPEGKPL 178 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPE 183 T E KIDG + + Y G RGDG +GED++ +R I +IP L IPE Sbjct: 179 PMTCEVKIDGLALNLIYRNGVLEQGLTRGDGLTGEDITLNVRTIGSIPANLGGPAADIPE 238 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 +E+RGEV++ +DF ALN E GR P+ANPRNAA+G LR+ +P TR L+F+ HG Sbjct: 239 FVEIRGEVFMRWDDFKALNGEQEDAGRPPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 298 Query: 243 LGKTSE---------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293 +G Q E G PV+ R+ +F I+ + R Sbjct: 299 IGTLRWGSGRPVGSHDVVADQSEAYTLYSKWGVPVSPHNREVTSFAQILDMIDYYGEHRG 358 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LLDI +Q+GRTG +T Sbjct: 359 DIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVT 418 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 PVA L+PV + G+ ++ TLHN +K + + +GD V+V++AG+VIP++ Sbjct: 419 PVAVLKPVYVAGSTVSRTTLHNPFEVKR-----------KGVLIGDTVVVRKAGDVIPEL 467 Query: 414 VDIIVNERHP---DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 V +V R D + F P CP C S++ + RC +C AQ E Sbjct: 468 VGPVVERRKGREDDLREFVMPDRCPSCGSKLA-----PAKEGDKDIRCPNVESCPAQLTE 522 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 R+ + SR AF+IE LG Q E+ Sbjct: 523 RIINLASRKAFDIEHLGDQSAIALTNPEE 551 Score = 205 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 51/214 (23%), Positives = 95/214 (44%), Gaps = 15/214 (7%) Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 + R+ + T + + ++D ++K R+ L R + +L IR +G AR + Sbjct: 692 VRVDRKTTRNGTVDVPVYVRPGENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLI 751 Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI-----CAV 625 A + S Q L + +G IA+++V ++ R + Sbjct: 752 ASAFGSLDAIEQA----------GVDELSAIDGIGPEIAESVVNWFAAAREPRDWRGETL 801 Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 A + + K +V TG+L+ R A+E + + G + +S+KT Sbjct: 802 RAWQAAGVGVAAAETSTLPQTLAGKTVVVTGSLEGFSRDSAKEAIIERGGKAAGSVSKKT 861 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 D ++VG+N GSK KA++LG+ +++E QF LL+ Sbjct: 862 DWVVVGENAGSKAAKAEELGIPMLDEAQFRTLLE 895 >gi|227546782|ref|ZP_03976831.1| DNA ligase (NAD(+)) [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212744|gb|EEI80625.1| DNA ligase (NAD(+)) [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 920 Score = 313 bits (801), Expect = 7e-83, Method: Composition-based stats. Identities = 158/508 (31%), Positives = 257/508 (50%), Gaps = 35/508 (6%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 + ++ E A + + + + YY P+ D+ YDA R + + AFP L Sbjct: 53 DVNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL-- 110 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 ++P P +++GG + V H +SL+ +++IE+L+ + + R + + Sbjct: 111 -DNPQSPTHRVGGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLP 169 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPEI 184 + E KIDG + + Y G RGDG +GED++ +R I +IP ++P+ Sbjct: 170 MSCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDF 229 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +E+RGEV++ +DF LN+E GR P+ANPRNAA+G LR+ +P TR L+F+ HGL Sbjct: 230 VEIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGL 289 Query: 244 GKTSEIFAKG---------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 G+ + Q + G PV+ R +F I+ R Sbjct: 290 GQLTWGADHPRGTHDVVADQSQAYDLYTKWGVPVSPHNRAVTSFQEILDMIEYYGEHRGD 349 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LL+I +Q+GRTG +TP Sbjct: 350 IEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTP 409 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VA L+PV + G+ + TLHN +K + I +GD V+V++AG+VIP++V Sbjct: 410 VAVLKPVYVAGSTVARTTLHNGFEVKR-----------KGILIGDTVVVRKAGDVIPELV 458 Query: 415 DIIVNERHPDAQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 ++ R F P FCP C +++ + RC +C AQ ER Sbjct: 459 GPVLERRKGREDQLREFVMPEFCPSCGAKL-----SPAKEGDKDIRCPNVESCPAQLTER 513 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSED 499 + SR AF+IE LG+Q E+ Sbjct: 514 VISLASRKAFDIEHLGEQSAIALTNPEE 541 Score = 200 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 15/192 (7%) Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592 + ++D ++K R+ L R + +L IR +G AR +A S Sbjct: 735 ENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLIASAMGSLAAIENAT-------- 786 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQN-----PRNICAVEALLKEVSPSIGRHEKNVSSEI 647 L + VG IA+++V ++ + A ++ + Sbjct: 787 --IEDLTAIDGVGPEIAESVVNWFAATREPGDWRGATLRAWQAAGVGVDEAETSSLPQTL 844 Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 K +V TG+L+ R A+E + + G + +S+KTD +++G N GSK KA++LG+ Sbjct: 845 AGKTVVVTGSLEGYSRDSAKEAIIERGGKAAGSVSKKTDYVVIGANAGSKAAKAEELGIP 904 Query: 708 IMNEEQFLFLLQ 719 +++E QF LL Sbjct: 905 MLSETQFAQLLA 916 >gi|300728177|ref|ZP_07061548.1| putative DNA ligase [Prevotella bryantii B14] gi|299774603|gb|EFI71224.1| putative DNA ligase [Prevotella bryantii B14] Length = 705 Score = 313 bits (801), Expect = 7e-83, Method: Composition-based stats. Identities = 167/755 (22%), Positives = 286/755 (37%), Gaps = 103/755 (13%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ ++ E+ ++ D YY I+ D E+DAL R + Sbjct: 1 MAEDKI-LEMRKAVDLLNRAADAYYNGQAEIMTDYEWDALFDRLKVLEQE----TGVILE 55 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P++ + + K H LSL K EDL K+ + Sbjct: 56 ESPIHHVSADSITG-QKEEHEFAALSLAKTKKTEDLTKWAD------------GKPIWIS 102 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG + Y+KGK RGDGH G +++ AI IP + I VRGE Sbjct: 103 WKLDGLTLVATYDKGKLTKVVTRGDGHFGTNITHLAPAIQGIP--QKIKNKGHIVVRGEC 160 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 IS DF + YANPRN ASG L + + +R+L + L T E Sbjct: 161 VISYADFNQFL----IESGEDYANPRNLASGSLTLKDIDEVKSRHLQWIPFTLVYTDENI 216 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM--KSIRSTLPYDIDGLVYKVDE 308 M V + I + + ++ P+ +DGLV ++ Sbjct: 217 NSWGKRMAFLEDNGMKTVKHECILTPNQDNIQKVIDRWTEEVTKNKNPFPVDGLVIAYED 276 Query: 309 FSLQKQLG-ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + + R + K+ ++ A+++L I+ + ++PVA EPV + G Sbjct: 277 YEYSQTGSITGHHATRAGYAFKWKDESATSKLDHIEWSCAAST-ISPVAVFEPVELEGTT 335 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + A+L N + L K + V +A ++IPKV+ + Sbjct: 336 VQRASLCNISECERLGIGDKD----------SVLSVIKANKIIPKVIQVQQKV-----GE 380 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P CP+C S+ + +G C+ + Q ++ FVS+D +I+G+ Sbjct: 381 LHIPETCPVCHSQTQIVTSIASGTRT--LHCSNPKCPAKQL-KKFARFVSKDGLDIDGIS 437 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 +Q L F I+ ADIF L +I + GFG S N++ +I K RN Sbjct: 438 EQTLSRFIN----MGWIKEYADIFRLSAHLN----QIATLEGFGKKSANNIHKAIEKSRN 489 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ------EINNIIAHNNDDWLSL--- 598 + +++L I VG ++ L K Y + A IN I +D L Sbjct: 490 AEAHKLLYALCIPLVGKDVCNRLLKSYP-LEKLAAIASGNPNINKPIVTEKEDNYELDLF 548 Query: 599 ----------------------------------IRVPLVGDIIAQAIVEFYQNPRNICA 624 + +G + ++V+++ + N Sbjct: 549 AQNEQENLLSNTTEGTTDANTFTPLSIDTRIAIFAGIDGLGPEKSASVVKWFSDEENQNE 608 Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSR 683 LL + S + + + E V TG + + R++ + Y+ G V+ +S+ Sbjct: 609 YRNLLGLLHLSQDDNN-PLGQKCEGLTFVITGDVHHYKNRNELKAYIESQGGKVTGSVSK 667 Query: 684 KTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLF 716 T +I D + K +KA QL + I++E+QF+ Sbjct: 668 STSYLINNDVTSTSGKNQKAHQLNIPIISEDQFIE 702 >gi|23336066|ref|ZP_00121295.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Bifidobacterium longum DJO10A] gi|189438929|ref|YP_001954010.1| NAD-dependent DNA ligase [Bifidobacterium longum DJO10A] gi|254781259|sp|B3DPR8|DNLJ_BIFLD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|189427364|gb|ACD97512.1| NAD-dependent DNA ligase [Bifidobacterium longum DJO10A] Length = 920 Score = 312 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 158/508 (31%), Positives = 257/508 (50%), Gaps = 35/508 (6%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 + ++ E A + + + + YY P+ D+ YDA R + + AFP L Sbjct: 53 DVNMMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL-- 110 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 ++P P +++GG + V H +SL+ +++IE+L+ + + R + + Sbjct: 111 -DNPQSPTHRVGGSFSNDFTSVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLP 169 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPEI 184 + E KIDG + + Y G RGDG +GED++ +R I +IP ++P+ Sbjct: 170 MSCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDF 229 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +E+RGEV++ +DF LN+E GR P+ANPRNAA+G LR+ +P TR L+F+ HGL Sbjct: 230 VEIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGL 289 Query: 244 GKTSEIFAKG---------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 G+ + Q + G PV+ R +F I+ R Sbjct: 290 GQLTWGPDHPRGTHDVVADQSQAYDLYTKWGVPVSPHNRAVTSFQEILDMIEYYGEHRGD 349 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LL+I +Q+GRTG +TP Sbjct: 350 IEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTP 409 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VA L+PV + G+ + TLHN +K + I +GD V+V++AG+VIP++V Sbjct: 410 VAVLKPVYVAGSTVARTTLHNGFEVKR-----------KGILIGDTVVVRKAGDVIPELV 458 Query: 415 DIIVNERHPDAQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 ++ R F P FCP C +++ + RC +C AQ ER Sbjct: 459 GPVLERRKGREDQLREFVMPEFCPSCGAKL-----SPAKEGDKDIRCPNVESCPAQLTER 513 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSED 499 + SR AF+IE LG+Q E+ Sbjct: 514 VISLASRKAFDIEHLGEQSAIALTNPEE 541 Score = 200 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 15/192 (7%) Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592 + ++D ++K R+ L R + +L IR +G AR +A S Sbjct: 735 ENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLIASAMGSLAAIENAT-------- 786 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQN-----PRNICAVEALLKEVSPSIGRHEKNVSSEI 647 L + VG IA+++V ++ + A ++ + Sbjct: 787 --IEDLTAIDGVGPEIAESVVNWFAATREPGDWRGATLRAWQAAGVGVDEAETSSLPQTL 844 Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 K +V TG+L+ R A+E + + G + +S+KTD +++G N GSK KA++LG+ Sbjct: 845 AGKTVVVTGSLEGYSRDSAKEAIIERGGKAAGSVSKKTDYVVIGANAGSKAAKAEELGIP 904 Query: 708 IMNEEQFLFLLQ 719 +++E QF LL Sbjct: 905 MLSETQFAQLLA 916 >gi|296454555|ref|YP_003661698.1| DNA ligase [Bifidobacterium longum subsp. longum JDM301] gi|296183986|gb|ADH00868.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. longum JDM301] Length = 920 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 158/508 (31%), Positives = 258/508 (50%), Gaps = 35/508 (6%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 + ++ E A + + + + YY P+ D+ YDA R + + AFP L Sbjct: 53 DVNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL-- 110 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 ++P P +++GG + V H +SL+ +++IE+L+ + + R + + Sbjct: 111 -DNPQSPTHRVGGSFSNDFTSVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLP 169 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPEI 184 + E KIDG + + Y G RGDG +GED++ +R I +IP ++P+ Sbjct: 170 MSCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDF 229 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +E+RGEV++ +DF LN+E GR P+ANPRNAA+G LR+ +P TR L+F+ HGL Sbjct: 230 VEIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGL 289 Query: 244 GKTSEIFAKG---------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 G+ + Q + G PV+ R +F I+ R Sbjct: 290 GQLTWGPDHPRGTHDVVADQSQAYDLYTRWGVPVSPHNRAVTSFQEILDMIEYYGEHRGD 349 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LL+I +Q+GRTG +TP Sbjct: 350 IEHALDGIVVKVDDLGLQRALGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTP 409 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VA L+PV + G+ + TLHN +K + I +GD V+V++AG+VIP++V Sbjct: 410 VAVLKPVYVAGSTVARTTLHNGFEVKR-----------KGILIGDTVVVRKAGDVIPELV 458 Query: 415 DIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 ++ R + F P FCP C +++ + RC +C AQ ER Sbjct: 459 GPVLERRKGREGQLREFVMPEFCPSCGAKLA-----PAKEGDKDIRCPNVESCPAQLTER 513 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSED 499 + SR AF+IE LG+Q E+ Sbjct: 514 VISLASRKAFDIEHLGEQSAIALTNPEE 541 Score = 200 bits (508), Expect = 8e-49, Method: Composition-based stats. Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 15/192 (7%) Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592 + ++D ++K R+ L R + +L IR +G AR +A S Sbjct: 735 ENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLIASAMGSLAAIENAT-------- 786 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNI-----CAVEALLKEVSPSIGRHEKNVSSEI 647 L + VG IA+++V ++ R + A ++ + Sbjct: 787 --IEDLTAIDGVGPEIAESVVNWFAAAREPGDWRGATLRAWQAAGVGVDEAETSSLPQTL 844 Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 K +V TG+L+ R A+E + + G + +S+KTD +++G N GSK KA++LG+ Sbjct: 845 AGKTVVVTGSLEGYSRDSAKEAIIERGGKAAGSVSKKTDYVVIGANAGSKATKAEELGIP 904 Query: 708 IMNEEQFLFLLQ 719 ++ E QF LL Sbjct: 905 MLGEAQFAQLLA 916 >gi|116514984|ref|YP_802613.1| DNA ligase [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285620|sp|Q058C9|DNLJ_BUCCC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116256838|gb|ABJ90520.1| DNA ligase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 587 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 194/626 (30%), Positives = 322/626 (51%), Gaps = 42/626 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++ L+ +I YH+ Y+ PII D YD L + + + + Sbjct: 1 MKDIYNQILKLQLQIKYHNYMYHTLDSPIISDILYDELYNKLLQLEKLYFKKKSLDKKIK 60 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 L+++G + + H IP LSL I NI D F +I + K N I + + K Sbjct: 61 LLDQVGAKKLHIFTEFFHKIPMLSLRSINNISDFDLFDKKIKEY--FKHINVITYFCDFK 118 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 DG + + Y+ G + A+ RG+G GE+++ I I +IP+ ++ + P+ IE+RGE++ Sbjct: 119 FDGLAVNLFYKNGILISASTRGNGSVGENITKNILMISSIPKKIAGSNIPKKIEIRGEIF 178 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG-KTSEIF 250 + K+DF LN G+K ++NPRNAA+G +R+LNP R LNFFV+G G Sbjct: 179 MRKSDFFILNQSCKLSGKKEFSNPRNAAAGSVRQLNPEIVKKRKLNFFVYGFGLFDYNKK 238 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y+ L +++ GFP+ ++ +Y+ IRS L ++IDG+V K+D Sbjct: 239 IDSHYQRLLQIKKWGFPLYKNYCVCKNKKEVIHFYHYANKIRSQLDFEIDGIVIKLDSIK 298 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ LG + P+W I+ KF T++ I ++GRTGI+TPVA P+N+ G I+ Sbjct: 299 LQNNLGCIEKYPKWAIALKFFSLDKETKIFKISFKVGRTGIITPVAYFFPINLFGVSISK 358 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+L+N IK L DIR+ D V V RAG+VIPK+ ++++++R+ Q Sbjct: 359 ASLYNIKTIKLL-----------DIRLHDYVTVYRAGDVIPKIRNVLIHKRNKYTQKIII 407 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P++CP C ++++ + KT C +C +Q ++RL +F S++ N +GLGK+ Sbjct: 408 PTYCPSCCTKLIFSDDLKT------CYCPASFSCFSQNVKRLIYFSSKNGLNFKGLGKKN 461 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + + P D F+L + K++NI GD + +I + +SL Sbjct: 462 IIKLINY----GYLYTPIDFFSL------TVKKLKNIFRMGDKLSEKIIKNIAFSKRVSL 511 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ++FI SLGI VG IA+ LA YY S + F N ++ +L ++ +G I+ Sbjct: 512 DKFICSLGIFGVGTSIAKRLAYYYRSVEKFF----------NTNYDTLSKIDHIGYNISN 561 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSI 636 AI+ F +N N + L++ ++ I Sbjct: 562 AIISFLKNKSNRSIILKLIRILNIFI 587 >gi|212715716|ref|ZP_03323844.1| hypothetical protein BIFCAT_00616 [Bifidobacterium catenulatum DSM 16992] gi|212661083|gb|EEB21658.1| hypothetical protein BIFCAT_00616 [Bifidobacterium catenulatum DSM 16992] Length = 891 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 163/509 (32%), Positives = 260/509 (51%), Gaps = 34/509 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + + ++S E A + + + + YY P+ D+ YDA R A+ FP L Sbjct: 63 LDVSSMSAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARMRCLQALEAQFPSL- 121 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 + P +++GG + V H +SL+ ++++E+LR++ + R D + Sbjct: 122 --DSTQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSLEELREWYDSVIRGLDWSDTKPL 179 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPE 183 T E KIDG + + Y G RGDG +GED++ +R I TIP+ +IPE Sbjct: 180 PMTCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEEDIPE 239 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHG 242 +E+RGEV++ +DF LN E GR P+ANPRNAA+G LR+ +P TR L+F+ HG Sbjct: 240 FVEIRGEVFMRWDDFNTLNRESEDAGRAPFANPRNAAAGSLRQKDPRITSTRRLSFYAHG 299 Query: 243 LGKTSE--------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 +G Q E + + G PV+ R+ TF I+ + R Sbjct: 300 IGTLQWGAKRGDGHDIVNNQSEAYELYKKWGIPVSPHNREVTTFSQILDMIDYYGEHRGD 359 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LLDI +Q+GRTG +TP Sbjct: 360 IEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVTP 419 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VA L+PV + G+ ++ TLHN ++ + + +GD V+V++AG+VIP++V Sbjct: 420 VAILKPVYVAGSTVSRTTLHNPFEVER-----------KGVLIGDTVVVRKAGDVIPELV 468 Query: 415 DIIVNERHPDAQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 ++ R F PS CP C +++ + RC +C AQ ER Sbjct: 469 GPVLERREGREDQLRRFVMPSQCPSCGAQLA-----PAKEGDKDIRCPNVESCPAQLTER 523 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 + + SR AF+IE LG Q E+ Sbjct: 524 IINLASRKAFDIEHLGDQSAIALTNPEED 552 Score = 161 bits (408), Expect = 3e-37, Method: Composition-based stats. Identities = 51/194 (26%), Positives = 91/194 (46%), Gaps = 15/194 (7%) Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 + + D I+K R+ L R + +L IR +G AR +A S + Sbjct: 704 PAENTRKMLDEIDKARHADLWRVLVALSIRRLGPPTARVIANTLGSLDAIERA------- 756 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI-----CAVEALLKEVSPSIGRHEKNVSS 645 L ++ +G IA+++V ++ + + +EA + + Sbjct: 757 ---SVDELSQIDGIGPEIAESVVTWFASAKEPGDWRGTVLEAWKAAGVGAEQVEISTLPQ 813 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 +E K +V TG+L R A+E + G S +S+KTD +++G+N G+K KA++LG Sbjct: 814 TLEGKTVVVTGSLIDFSRDSAKEAIISRGGRASGSVSKKTDWVVIGENAGAKAAKAEELG 873 Query: 706 VKIMNEEQFLFLLQ 719 V ++NE+QF LL+ Sbjct: 874 VPMLNEDQFKILLE 887 >gi|315124105|ref|YP_004066109.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017827|gb|ADT65920.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 561 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 173/617 (28%), Positives = 297/617 (48%), Gaps = 59/617 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++E + YY+ +P+ D EYD L R + P K Sbjct: 3 KEEYLEKVALANLWMRAYYEKDEPLASDEEYDVLIRELRVFEEQN---KDEISKDSPTQK 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 I + K+ H S+E +++ +LR + R F +EPK DG Sbjct: 60 IAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE GK V A RGDG GED++ + I IP ++ E IE+RGEV I K+D Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIP--KNIAYKERIEIRGEVVILKDD 169 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N++ + + +ANPRNAASG LR+L+ + R L F+ G+G + + + Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVG-ENTLNFTKHSD 228 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++Q +R LGF ++ ++ ++ Y+E+ ++R P +DG+V +VD+ +L ++LG Sbjct: 229 VMQFIRELGFLKDDFIKLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELG 288 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + P++M + KF + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I L D+++ D V V R+G+VIPK+ + R S P CP Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 CQS ++ + + C + + + HFVS+ NI+GLG+ ++ +K Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + I TL+ + E + GF + + NL ++I + R L RFI + Sbjct: 449 HK----------KITTLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI H+G A+ L+ + + + + + G+ +A ++ EF Sbjct: 499 LGIEHIGEVAAKKLSLSFG------------KEWHKQSFEAYANLEGFGEQMALSLCEFT 546 Query: 617 QNPRNICAVEALLKEVS 633 + N ++ K ++ Sbjct: 547 RV--NRTRIDEFYKLLN 561 >gi|301168580|emb|CBW28170.1| DNA ligase [Bacteriovorax marinus SJ] Length = 628 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 167/702 (23%), Positives = 302/702 (43%), Gaps = 81/702 (11%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K + LE+EI +H YY + I D EYD L+ + P+ P+ K+ Sbjct: 4 KRIQELEKEIEHHKVLYY-KGQTEIPDHEYDKLEDELREL-----------SPDSPILKM 51 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + + KV H LSL K + ++L ++ KIDG Sbjct: 52 VGSVVTAEDKVKHDEKMLSLAKTYKEDELATWMD------------GREAISMYKIDGMS 99 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 ++ YE G V A RGDG GE++++ I TIP + + IEVRGE+Y + F Sbjct: 100 CSLIYENGNLVLAKTRGDGTFGENITSKALWIDTIPNTIKE--EKRIEVRGEIYCDEEHF 157 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +L+D+M+A+G + + RN +GI+ R + +++ L F L +I + + E + Sbjct: 158 FSLSDDMVALGLEKPTSQRNIVAGIISRKDHLQLSKKLTFKAFEL--LGDISVQTEVEKV 215 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + GF + +E K + Y IDG+V+ ++ ++LGE Sbjct: 216 KYLEAQGFETLEYT-LHKDAKSLSKTIDEAKDFMAEGDYLIDGIVFSFNDQKWHRELGET 274 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 A PR+ ++ KF + T + +I Q+ R GILTPVA ++PV + GA I+ TLHN Sbjct: 275 AHHPRYKMAFKFQGESRETVIENILWQVSRNGILTPVANVKPVELSGAKISRVTLHNFGL 334 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 +K + ++ GDR+ + R+GEVIPK ++++ + FS+P CP C Sbjct: 335 VKQFE-----------LKQGDRIEIIRSGEVIPKFLEVVESSDEE----FSYPKTCPSC- 378 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 + + + C + + L + I+ L ++L+ +++ Sbjct: 379 -------DEEIEVVDIRLICRNSECPAIVKESILNYI---QKIGIDDLSSKRLEELIRAK 428 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 + +D++ L + + + T L +I K + + L F+ +LG Sbjct: 429 ----LVLKISDLYKLNME------SLLTLDKVKEKLATKLLGAIEKSKTVDLVTFLSALG 478 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I + +++ + LI + A + Sbjct: 479 ISGGAYNKCEKV---------VFAGHDSLEKVKSLTPDKLILIDGFAKKSADDF--YLSL 527 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 +E L V +++ NKK+ TG+L + +R + + +V Sbjct: 528 SEKFPLIEELESVG--FSFEEVIKVETKVSNKKICITGSLSE-KRSVIESKIRDASGIVV 584 Query: 679 AILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +S+ TDI++ D + SKL+KA+ LG+ I+ EE+ + ++ Sbjct: 585 SSVSKNTDILVTNDQSSGSSKLKKAKDLGILIITEEELISMI 626 >gi|189490484|ref|YP_001957054.1| putative DNA ligase [Pseudomonas phage 201phi2-1] gi|164609549|gb|ABY63158.1| putative DNA ligase [Pseudomonas phage 201phi2-1] Length = 695 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 178/726 (24%), Positives = 305/726 (42%), Gaps = 78/726 (10%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R E L + I +++ YY II DS YD L + P+ + P Sbjct: 4 RHEYDVLCKRIRHYNYMYYVLDISIIPDSLYDQLLISLKLLEKEHPEWVTR---DSPTQT 60 Query: 78 IGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEPKID 135 +G + V P LSL+ ++ ++ + I+ + K D S E K+D Sbjct: 61 VGHPVYESHFELVKRVKPMLSLDNLFTCDEAVDWSIDIHGDIYVGKKDESAEIVAEWKMD 120 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y A+ RGDG +GEDV+ + IPRVL + +RGEV + Sbjct: 121 GLSLDVNYTYDTMELASTRGDGTTGEDVTPNAMVVEGIPRVLKTPRHGGVSIRGEVVVRL 180 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 D+ +N ++ A G+K +ANPRN A+G LR+ +P R L F + + +T Sbjct: 181 ADYNQINADLEAAGKKTFANPRNYAAGSLRQKDPRITRERKLVFVAYSVERTLGDPEATW 240 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFH-----GIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Y+ ++ GF + ++ + G + E ++ RS+ P+++DG+V+KV + Sbjct: 241 YDDQAWLKENGFYTADTGKRLSHDQRGMTSGFPALIAECQAERSSYPFEVDGIVFKVVKH 300 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + ++ LG +R PRW ++KF + TRL+ +D Q+GRTG LTP+AR+EP+++ G I+ Sbjct: 301 THRETLGYTSRFPRWGRAYKFPASKGETRLISVDRQVGRTGKLTPMARIEPIHVHGTTIS 360 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 N T+HN ++ + G V + RAG+VIP + I + H + + Sbjct: 361 NVTIHNLKELE-----------QHKLFEGCYVEISRAGDVIPYLERRITD--HNGEKLYG 407 Query: 430 FPSFCPICQSRVVRDLNPKTGK--LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 CP C ++VV KT + + C +Q+ L + R NI+GLG Sbjct: 408 EVEACPCCGTKVVVVHGKKTKENPEGSRTEYCPNTKCKDRQVAHLLYCTQRHVLNIKGLG 467 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + + + + + P + L+ + E + + N Sbjct: 468 DELVMDLYNAGVVD--VTRPLSLLMLKHEDFLKIGQSERM------AEKLAMAVTIASAN 519 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 + L R I +LGI A LA+ + + + ++ + +GD+ Sbjct: 520 LDLTRVITALGISGAADGTAERLAREIRTLEEISIAT----------IDRMLEIDDIGDV 569 Query: 608 IAQAIVEFYQNPRNICAV--EALLKEVSPSIGRHEKNVSSEIE-NKKLVFTGTLQKIQ-- 662 AQ+I EF+ + N A V + + + + V TG+ K Sbjct: 570 TAQSIFEFF-DEDNRKPHGQSAWRPYVGDRYLKAPEPLGTLFRPGTTFVVTGS--KFGDK 626 Query: 663 -RHKAQEYVTQLGAVVS------------AILSRKTDIIIVGDNPGSKLEKAQQLGVK-- 707 R + + Q GA VS ++ T KL A++LG+ Sbjct: 627 ARKDLERWFKQNGATVSSTVTKSTTTVYCG--TKYTAH---------KLATAKELGIPYV 675 Query: 708 IMNEEQ 713 I NE+ Sbjct: 676 IYNEDG 681 >gi|213691626|ref|YP_002322212.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254781260|sp|B7GPV4|DNLJ_BIFLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|213523087|gb|ACJ51834.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457713|dbj|BAJ68334.1| DNA ligase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 921 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 157/508 (30%), Positives = 257/508 (50%), Gaps = 35/508 (6%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 + ++ E A + + + + YY P+ D+ YDA R + + AFP L Sbjct: 53 DVNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL-- 110 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 ++P P +++GG + V H +SL+ +++IE+L+ + + R + + Sbjct: 111 -DNPQSPTHRVGGSFSNDFVSVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLP 169 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPEI 184 + E KIDG + + Y G RGDG +GED++ +R I +IP ++P+ Sbjct: 170 MSCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDF 229 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +E+RGEV++ +DF LN+E GR P+ANPRNAA+G LR+ +P TR L+F+ HGL Sbjct: 230 VEIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGL 289 Query: 244 GKTSEIFAKG---------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 G+ + Q + G PV+ R +F I+ R Sbjct: 290 GQLTWGADHPRGTHDVVADQSQAYDLYTRWGVPVSPHNRAVTSFQEILDMIEYYGEHRGD 349 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LL+I +Q+GRTG +TP Sbjct: 350 IEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTP 409 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VA L+PV + G+ + TLHN +K + + +GD V+V++AG+VIP++V Sbjct: 410 VAVLKPVYVAGSTVARTTLHNGFEVKR-----------KGVLIGDTVVVRKAGDVIPELV 458 Query: 415 DIIVNERHPDAQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 ++ R F P FCP C +++ + RC +C AQ ER Sbjct: 459 GPVLERRKGREDQLREFVMPEFCPSCGAKLA-----PAKEGDKDIRCPNVESCPAQLTER 513 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSED 499 + SR AF+IE LG+Q E+ Sbjct: 514 VISLASRKAFDIEHLGEQSAIALTNPEE 541 Score = 197 bits (500), Expect = 7e-48, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 15/192 (7%) Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592 + ++D ++K R+ L R + +L IR +G AR +A S + Sbjct: 735 ENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLIASAMGSLAAIEKAT-------- 786 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQN-----PRNICAVEALLKEVSPSIGRHEKNVSSEI 647 L + VG IA+++V ++ + A ++ + Sbjct: 787 --IEDLTAIDGVGPEIAESVVNWFAATREPGDWRGATLRAWQAAGVGVDEAETSSLPQTL 844 Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 K +V TG+L+ R A+E + + G + +S+KTD +++G N GSK KA++LG+ Sbjct: 845 AGKTVVVTGSLEGYSRDSAKEAIIERGGKAAGSVSKKTDYVVIGANAGSKAIKAEELGIP 904 Query: 708 IMNEEQFLFLLQ 719 ++ E QF LL+ Sbjct: 905 MLGEIQFAQLLE 916 >gi|284047072|ref|YP_003397412.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684] gi|283951293|gb|ADB54037.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684] Length = 670 Score = 310 bits (795), Expect = 4e-82, Method: Composition-based stats. Identities = 170/719 (23%), Positives = 295/719 (41%), Gaps = 72/719 (10%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++ +L +I +H Y P ++D++YDAL+ A+ A P++ + PL++ Sbjct: 7 EQARALAAQIDHHRGLY-ARGAPALVDADYDALEDELRALLAASPEVVLD---DNPLDRP 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 + + HS P LSLEK E L F R F + PK+DG Sbjct: 63 WAPELVPGQTIRHSRPMLSLEKATTAEQLDAFCAR---------FPGQAFRVTPKLDGIS 113 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I I Y+ G+ Y A RGDG GE V+ R + + +EVRGE + + + Sbjct: 114 IAIVYQDGELEYVATRGDGRDGERVTDKARLVVLGLPLTLGA-AGRVEVRGEAVMLDSIW 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 A ND +P NPR+AA+G +P + ++ Sbjct: 173 RAYNDA---HPDRPLTNPRSAAAGTFVVKSPEACVAEGRTLRF-FAFDLDEAEVSDGDVS 228 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 +++ LGF V + + A + ++ + R + IDG V ++ + G Sbjct: 229 ERLVALGFEVPDVL-PAADAEQARAAIEQVAARRGEYDFGIDGAVVRLASRRAFEAAGAT 287 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 + +PR ++ K+ ++ +T L + +G+ G + P A+++PV +GG +T A+LHN Sbjct: 288 SSAPRGALAWKYPAEERTTVLRAVTWPVGKIGRVVPRAQVDPVFVGGTTVTFASLHNPRL 347 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 ++ RDIR+GD V + R G+VIP + +V +R D P+ CP C Sbjct: 348 VR-----------ERDIRIGDTVRIMRRGDVIPFIAGSVVEQRTGDEVEIELPTHCPSCG 396 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 + +V + L C AQ + RL H+ SR A ++EG+G ++ + Sbjct: 397 TELVVRGTGEELW-------CENLQCPAQAVRRLIHWSSRHASDMEGVGNTWIEKLAED- 448 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 + P+D + L Q G+VS + SI++ R + L R + L Sbjct: 449 ---GVLERPSDFYALTVEQLVGY------ERMGEVSANAMVASIDRSRGVGLRRALIGLA 499 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I +A+ L I L + +G +A ++V ++ Sbjct: 500 IPMASEGVAKRLC---------LAGFERIEEIVERTAEELEAIRDIGPKVAASMVAYFAR 550 Query: 619 PRNICAVEALLKEVSPSIG-------RHEKNVSSEIENKKLVFTGTLQKIQRHKAQ---- 667 P + AL + ++ +V TG A+ Sbjct: 551 PEVQEELCALRAAGVDLDVRDEDRPIEVADAAETPLKGATVVVTGAFAD-PDSGAKVARP 609 Query: 668 ---EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + Q GA + +S T ++I G N G +K +KA +LGV+++++EQ L + Sbjct: 610 AVVRLLEQAGATSVSSVSATTTMLIAGSNVGAAKTDKAARLGVQVVDQEQAWDWLAEAG 668 >gi|225352232|ref|ZP_03743255.1| hypothetical protein BIFPSEUDO_03848 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157479|gb|EEG70818.1| hypothetical protein BIFPSEUDO_03848 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 909 Score = 310 bits (795), Expect = 5e-82, Method: Composition-based stats. Identities = 161/509 (31%), Positives = 257/509 (50%), Gaps = 34/509 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + + ++S E A + + + + YY P+ D+ YDA R A+ FP L Sbjct: 81 LDVSSISAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARIRCLQALEAQFPSL- 139 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 + P +++GG + V H +SL+ ++++E+L ++ + R + + Sbjct: 140 --DSAQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSLEELHEWYDGVIRGLDWPETKPL 197 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPE 183 T E KIDG + + Y G RGDG GED++ +R I TIP+ +IPE Sbjct: 198 PMTCEVKIDGLALNLIYRNGVLEQGLTRGDGVIGEDITLNVRTISTIPQNLAGPEEDIPE 257 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 +E+RGEV++ +DF LN E GR P+ANPRNAA+G LR+ +P TR L+F+ HG Sbjct: 258 FVEIRGEVFMRWDDFNTLNKENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 317 Query: 243 LGKTSE--------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 +G Q E + G PV+ R+ TF I+ + R Sbjct: 318 IGTLQWGAKRGADHDAVNNQSEAYGLYKKWGIPVSPHNREVTTFSQILDMIDYYGEHRGD 377 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LLDI +Q+GRTG +TP Sbjct: 378 IEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVTP 437 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VA L+PV + G+ ++ TLHN ++ + + +GD V+V++AG+VIP++V Sbjct: 438 VAILKPVYVAGSTVSRTTLHNPFEVER-----------KGVLIGDTVVVRKAGDVIPELV 486 Query: 415 DIIVNERHPDAQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 ++ R F PS CP C +++ + RC +C AQ ER Sbjct: 487 GPVLERREGHEDQLRRFVMPSQCPSCGAQLA-----PAKEGDKDIRCPNVESCPAQLTER 541 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 + + SR AF+IE LG Q E+ Sbjct: 542 IINLASRKAFDIEHLGDQSAIALTNPEED 570 Score = 164 bits (416), Expect = 3e-38, Method: Composition-based stats. Identities = 51/194 (26%), Positives = 92/194 (47%), Gaps = 15/194 (7%) Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 + + D I+K R+ L R + +L IR +G AR +A + S + Sbjct: 722 PAENTRKMLDEIDKARHADLWRVLVALSIRRLGPPTARVIANTFGSLDAIERA------- 774 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI-----CAVEALLKEVSPSIGRHEKNVSS 645 L ++ +G IA+++V ++ + + +EA + + Sbjct: 775 ---SVDELSQIDGIGPEIAESVVTWFASAKEPGDWRGTVLEAWKAAGVGAEQVEISTLPQ 831 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 +E K +V TG+L R A+E + G S +S+KTD +++G+N G+K KA++LG Sbjct: 832 TLEGKTVVVTGSLIDFSRDSAKEAIISRGGRASGSVSKKTDWVVIGENAGAKAAKAEELG 891 Query: 706 VKIMNEEQFLFLLQ 719 V ++NE+QF LL+ Sbjct: 892 VPMLNEDQFKILLE 905 >gi|330722364|gb|EGH00218.1| DNA ligase [gamma proteobacterium IMCC2047] Length = 394 Score = 310 bits (794), Expect = 6e-82, Method: Composition-based stats. Identities = 161/418 (38%), Positives = 240/418 (57%), Gaps = 38/418 (9%) Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 + Y+IDG+V+K++ LQ ++G +R+PRW I++KF ++ T+LL ++ Q+GRTG +TP Sbjct: 1 MHYEIDGIVFKLNSLELQNKVGFVSRAPRWAIAYKFPAQEEITQLLGVEFQVGRTGAVTP 60 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VARL+PV +GG ++NATLHN D I+ L +R GD V+V+RAG+VIP+VV Sbjct: 61 VARLQPVFVGGVTVSNATLHNGDEIERL-----------GVRCGDTVVVRRAGDVIPQVV 109 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 +++ +R ++ FPS CP+C S V+R A RCTGGL C+AQ+ + +KH Sbjct: 110 QVVLEKRPENSTAIEFPSSCPVCGSDVIRAEGE------AVARCTGGLYCAAQRKQAIKH 163 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 F SR AF+IEGLG + +D + I AD+F LQ + N+ GD S Sbjct: 164 FASRKAFDIEGLGDKLVDMLVDQQ----LINSIADLFHLQHE------ALSNLERMGDKS 213 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 NL D++ K + +L RFI++LGIR VG A +LA ++ Q Sbjct: 214 AQNLLDALQKSKQTTLARFIYALGIREVGEATAANLAHHFADLGALMQAKE--------- 264 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLV 653 L+ V VG I+A I F+Q P N +EALL E +KNV + + + V Sbjct: 265 -EQLLEVNDVGPIVASHIAHFFQQPHNQEIIEALLAEGIRWPSVDKKNVEAMPLAGQTWV 323 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 TGTL+ + R +A+ + LGA VS +S KT ++ G + GSKL KA+ LG+++ +E Sbjct: 324 LTGTLETLTRDQAKSRLVALGAKVSGSVSAKTHCVVAGASAGSKLTKAESLGIEVRDE 381 >gi|291456400|ref|ZP_06595790.1| DNA ligase, NAD-dependent [Bifidobacterium breve DSM 20213] gi|291381677|gb|EFE89195.1| DNA ligase, NAD-dependent [Bifidobacterium breve DSM 20213] Length = 930 Score = 310 bits (793), Expect = 7e-82, Method: Composition-based stats. Identities = 161/509 (31%), Positives = 259/509 (50%), Gaps = 35/509 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + + L+ E A + + + + YY P+ D+ YDA R + AFP L Sbjct: 52 LDVNTLNAEVAARLWARVAAWVEADQIAYYIDDAPVSSDAAYDARLRCLQKLEAAFPSL- 110 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 ++P P +++GG + V H +SL+ +++IE+L+ + + R D + Sbjct: 111 --DNPQSPTHRVGGSFSNDFTSVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPDGKPL 168 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPE 183 + E KIDG + + Y G RGDG +GED++ +R I +IP +IP+ Sbjct: 169 PMSCEVKIDGLALNLIYRGGVLEQGLTRGDGVTGEDITLNVRTIGSIPAQLGGPKEDIPD 228 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 +E+RGEV++ +DF LN+E GR +ANPRNAA+G LR+ +P TR L+F+ HG Sbjct: 229 FVEIRGEVFMRWDDFHTLNNEQEDAGRALFANPRNAAAGSLRQKDPRITATRRLSFYAHG 288 Query: 243 LGKTSEIFAKG---------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293 LG+ + Q + G PV+ R +FH I+ + R Sbjct: 289 LGQLTWGPDHPRGTHDVIADQSQAYDLYAKWGVPVSPHNRSVTSFHEILDMIDYYGEHRG 348 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LL+I +Q+GRTG +T Sbjct: 349 DIEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVT 408 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 PVA L+PV + G+ + TLHN +K + I +GD V+V++AG+VIP++ Sbjct: 409 PVAVLKPVYVAGSTVARTTLHNGFEVKR-----------KGILIGDTVVVRKAGDVIPEL 457 Query: 414 VDIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 V ++ R + F P FCP C +++ + RC +C AQ E Sbjct: 458 VGPVLERRKGRESELREFVMPEFCPSCGAKLA-----PAKEGDKDIRCPNVESCPAQLTE 512 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 R+ SR AF+IE LG+Q E+ Sbjct: 513 RVISLASRKAFDIEHLGEQSAIALTNPEE 541 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 15/192 (7%) Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592 + ++D ++K R+ L R + +L IR +G AR +A S Sbjct: 745 ENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLIASAMGSLGAIENAT-------- 796 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNI-----CAVEALLKEVSPSIGRHEKNVSSEI 647 L + VG IA+++V ++ R + A + + Sbjct: 797 --VEDLTAIDGVGPEIAESVVNWFAAAREPGDWRGETLRAWQAAGVGVDVAETSTLPQTL 854 Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 K +V TG+L+ R A+E + + G + +S+KTD ++VG+N GSK KA++LG+ Sbjct: 855 AGKTVVVTGSLEGYSRDSAKEAIIERGGKAAGSVSKKTDYVVVGENAGSKAAKAEELGIP 914 Query: 708 IMNEEQFLFLLQ 719 ++NE QF LL+ Sbjct: 915 MLNEAQFAQLLE 926 >gi|255595065|ref|XP_002536222.1| DNA ligase, NAD-dependent, putative [Ricinus communis] gi|223520412|gb|EEF26161.1| DNA ligase, NAD-dependent, putative [Ricinus communis] Length = 491 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 191/529 (36%), Positives = 286/529 (54%), Gaps = 41/529 (7%) Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSEIF 250 ++K DF +N E+ A G + ANPRNAA+G LR+L+P +R L F +G G Sbjct: 1 MNKADFALVNAELAAKGEETKANPRNAAAGSLRQLDPKVTASRRLRFLAYGFGVCEGFEP 60 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A Q E L + +GF +++ GI++++ +K+ R+ LP+DIDG+VYKV+ Sbjct: 61 ADTQEEQLASLVQMGFEISHTNTVVKGAAGILAHFESVKATRADLPFDIDGVVYKVNSKK 120 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q +LG +R+PRW I+ KF ++A TR + I+ Q+GRTG LTPVARLEPV +GG +TN Sbjct: 121 QQDELGWNSRTPRWAIALKFPPEEAVTRCIAIEPQVGRTGPLTPVARLEPVFVGGVTVTN 180 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNE + +DIR+GD V+V+RAG+VIP++V + R + Sbjct: 181 ATLHNEQEVHR-----------KDIRIGDHVIVRRAGDVIPEIVRSLPERRDGTETVYYT 229 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C + V ++ + AAHRCTGGL C+ Q+L + HF SR A +IEGLG+ Sbjct: 230 PAHCPTCGTPVHKEED------TAAHRCTGGLKCADQRLYAITHFASRLALDIEGLGEGT 283 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + + A I P+ +F L Q + + G G S L +I + R L Sbjct: 284 VTKLVE----AGLIERPSHLFALLPSQIAA------LPGEGKNSAAKLVAAIERTRAPEL 333 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFI++LGI +VG A++ A+++LS+ F L + VG A Sbjct: 334 NRFIYALGIPNVGENSAKNFARHFLSFAAFKAAT----------ADELQALEDVGPTTAA 383 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ F++N N VEAL++ V P + S + V TGTL + R + + Sbjct: 384 SVRAFFENADNAAEVEALVECVQPKDVTVSTD-SQSLTGLTFVITGTLSR-DRESFKATI 441 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G VS +S+KT+ ++ G G+KL KAQ++GV I++E F LL Sbjct: 442 EAAGGKVSGSVSKKTNYLLAGAEAGTKLAKAQEMGVTILDEAAFDALLA 490 >gi|297243530|ref|ZP_06927462.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis AMD] gi|296888575|gb|EFH27315.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis AMD] Length = 922 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 164/483 (33%), Positives = 243/483 (50%), Gaps = 36/483 (7%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY P D+ YDA R A+ AFP L + P P +++GG + V H Sbjct: 79 AYYVEDSPTSSDAAYDARMRALSALEAAFPTL---DTPQSPTHRVGGTFSNDFTSVKHPS 135 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 +SL+ +++IE+L + + R Q + + T E KIDG + + Y G Sbjct: 136 RMMSLDDVFSIEELHDWYNSVIRDLQWDESQPLPMTCEVKIDGLALNLIYRNGTLEQGLT 195 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209 RGDG +GED++ +R I IP L +IPE +E+RGEV++ DF LNDE G Sbjct: 196 RGDGVTGEDITLNVRTIEAIPTQLHSDNPDDIPEFVEIRGEVFMKWEDFRKLNDEQENAG 255 Query: 210 RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQK-------- 260 R +ANPRNAA+G LR+ +P TR L+FF HGLG+ K Sbjct: 256 RVAFANPRNAAAGSLRQKDPRITATRRLSFFAHGLGELRWKENTSHNNSETKFNQSDAYK 315 Query: 261 -MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 + G PV+ R+ F I + R+ + + +DG+V KVD+ +LQ QLG + Sbjct: 316 LYQQWGIPVSPYTRKVTNFSEIEEMIDYYGKHRANILHALDGIVVKVDDRALQHQLGATS 375 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 R+PRW I++K+ ++ +T L DI +Q+GRTG +TPVA LEPV + G+ I+ TLHN + Sbjct: 376 RAPRWAIAYKYPPEEVNTYLKDIIVQVGRTGRVTPVAVLEPVTVAGSTISRTTLHNAYEV 435 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ---PFSFPSFCPI 436 + + + +GD V+V++AG+VIP++V ++ R F P +CP Sbjct: 436 E-----------HKGVLIGDTVVVRKAGDVIPELVGPVLKAREGRENELRKFVMPEYCPS 484 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C +++ + RC C AQ ER+ H SR AF+IE LG Sbjct: 485 CGTKLA-----PAKEGDKDIRCPNVENCPAQLTERIIHLASRQAFDIENLGDNAALALTN 539 Query: 497 SED 499 ED Sbjct: 540 PED 542 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 16/199 (8%) Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 + + + L + K +N +L R + +L IR +G AR +A + S N ++ Sbjct: 715 RPSETTRSMLEEIAQKGKNAALWRVLVALSIRRLGPPTARLIAANFGSLDNISKA----- 769 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQ---NPRNI--CAVEALLKEVSPSIGRHEKNV 643 L ++ VG IAQA+ ++Q +P N +++ + + Sbjct: 770 -----SIEELTQIDGVGPEIAQAVYNWFQQAKDPANWQFEVLKSWQEAGVVG-KVEASSF 823 Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 + + K +V TG+LQ R A+E + G S +S+ T +I+G+N GSK KAQ+ Sbjct: 824 AQTLVGKTIVVTGSLQGFTRDSAKEAIVSRGGKASGSVSKNTYCVILGENAGSKATKAQE 883 Query: 704 LGVKIMNEEQFLFLLQQYN 722 LG+ ++NE+QF LL+ N Sbjct: 884 LGIPMLNEQQFNTLLKTGN 902 >gi|283783245|ref|YP_003373999.1| DNA ligase (NAD(+)) [Gardnerella vaginalis 409-05] gi|283441754|gb|ADB14220.1| DNA ligase (NAD(+)) [Gardnerella vaginalis 409-05] Length = 962 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 164/483 (33%), Positives = 243/483 (50%), Gaps = 36/483 (7%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY P D+ YDA R A+ AFP L + P P +++GG + V H Sbjct: 119 AYYVEDSPTSSDAAYDARMRALSALEAAFPTL---DTPQSPTHRVGGTFSNDFTSVKHPS 175 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 +SL+ +++IE+L + + R Q + + T E KIDG + + Y G Sbjct: 176 RMMSLDDVFSIEELHDWYNSVIRDLQWDESQPLPMTCEVKIDGLALNLIYRNGTLEQGLT 235 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209 RGDG +GED++ +R I IP L +IPE +E+RGEV++ DF LNDE G Sbjct: 236 RGDGVTGEDITLNVRTIEAIPTQLHSDNPDDIPEFVEIRGEVFMKWEDFRKLNDEQENAG 295 Query: 210 RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQK-------- 260 R +ANPRNAA+G LR+ +P TR L+FF HGLG+ K Sbjct: 296 RVAFANPRNAAAGSLRQKDPRITATRRLSFFAHGLGELRWKENTSHNNSETKFNQSDAYK 355 Query: 261 -MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 + G PV+ R+ F I + R+ + + +DG+V KVD+ +LQ QLG + Sbjct: 356 LYQQWGIPVSPYTRKVTNFSEIEEMIDYYGKHRANILHALDGIVVKVDDRALQHQLGATS 415 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 R+PRW I++K+ ++ +T L DI +Q+GRTG +TPVA LEPV + G+ I+ TLHN + Sbjct: 416 RAPRWAIAYKYPPEEVNTYLKDIIVQVGRTGRVTPVAVLEPVTVAGSTISRTTLHNAYEV 475 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ---PFSFPSFCPI 436 + + + +GD V+V++AG+VIP++V ++ R F P +CP Sbjct: 476 E-----------HKGVLIGDTVVVRKAGDVIPELVGPVLKAREGRENELRKFVMPEYCPS 524 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C +++ + RC C AQ ER+ H SR AF+IE LG Sbjct: 525 CGTKLA-----PAKEGDKDIRCPNVENCPAQLTERIIHLASRQAFDIENLGDNAALALTN 579 Query: 497 SED 499 ED Sbjct: 580 PED 582 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 16/199 (8%) Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 + + + L + K +N +L R + +L IR +G AR +A + S N ++ Sbjct: 755 RPSETTRSMLEEIAQKGKNAALWRVLVALSIRRLGPPTARLIAANFGSLDNISKA----- 809 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQ---NPRNI--CAVEALLKEVSPSIGRHEKNV 643 L ++ VG IAQA+ ++Q +P N +++ + + Sbjct: 810 -----SIEELTQIDGVGPEIAQAVYNWFQQAKDPANWQFEVLKSWQEAGVVG-KVEASSF 863 Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 + + K +V TG+LQ R A+E + G S +S+ T +I+G+N GSK KAQ+ Sbjct: 864 AQTLVGKTIVVTGSLQGFTRDSAKEAIVSRGGKASGSVSKNTYCVILGENAGSKATKAQE 923 Query: 704 LGVKIMNEEQFLFLLQQYN 722 LG+ ++NE+QF LL+ N Sbjct: 924 LGIPMLNEQQFNTLLKTGN 942 >gi|298252820|ref|ZP_06976614.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis 5-1] gi|297533184|gb|EFH72068.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis 5-1] Length = 962 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 164/483 (33%), Positives = 243/483 (50%), Gaps = 36/483 (7%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY P D+ YDA R A+ AFP L + P P +++GG + V H Sbjct: 119 AYYVEDSPTSSDAAYDARMRALSALEAAFPTL---DTPQSPTHRVGGTFSNDFTSVKHPS 175 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 +SL+ +++IE+L + + R Q + + T E KIDG + + Y G Sbjct: 176 RMMSLDDVFSIEELHDWYNSVIRDLQWDESKPLPMTCEVKIDGLALNLIYRNGTLEQGLT 235 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209 RGDG +GED++ +R I IP L +IPE +E+RGEV++ DF LNDE G Sbjct: 236 RGDGVTGEDITLNVRTIEAIPTQLHSDNPDDIPEFVEIRGEVFMKWEDFRKLNDEQENAG 295 Query: 210 RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQK-------- 260 R +ANPRNAA+G LR+ +P TR L+FF HGLG+ K Sbjct: 296 RVAFANPRNAAAGSLRQKDPRITATRRLSFFAHGLGELRWKENTSHNNSETKFNQSDAYK 355 Query: 261 -MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 + G PV+ R+ F I + R+ + + +DG+V KVD+ +LQ QLG + Sbjct: 356 LYQQWGIPVSPYTRKVTNFSEIEEMIDYYGKHRANILHALDGIVVKVDDRALQHQLGATS 415 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 R+PRW I++K+ ++ +T L DI +Q+GRTG +TPVA LEPV + G+ I+ TLHN + Sbjct: 416 RAPRWAIAYKYPPEEVNTYLKDIIVQVGRTGRVTPVAVLEPVTVAGSTISRTTLHNAYEV 475 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ---PFSFPSFCPI 436 + + + +GD V+V++AG+VIP++V ++ R F P +CP Sbjct: 476 E-----------HKGVLIGDTVVVRKAGDVIPELVGPVLKAREGRENELRKFVMPEYCPS 524 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C +++ + RC C AQ ER+ H SR AF+IE LG Sbjct: 525 CGTKLA-----PAKEGDKDIRCPNVENCPAQLTERIIHLASRQAFDIENLGDNAALALTN 579 Query: 497 SED 499 ED Sbjct: 580 PED 582 Score = 196 bits (497), Expect = 2e-47, Method: Composition-based stats. Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 16/199 (8%) Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 + + + L + K +N +L R + +L IR +G AR +A + S N ++ Sbjct: 755 RPSETTRSMLEEIAQKGKNAALWRVLVALSIRRLGPPTARLIAANFGSLDNISKA----- 809 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQ---NPRNI--CAVEALLKEVSPSIGRHEKNV 643 L ++ VG IAQA+ ++Q +P N +++ + + Sbjct: 810 -----SIEELTQIDGVGPEIAQAVYNWFQQAKDPANWQFEVLKSWQEAGVVG-KVETSSF 863 Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 + + K +V TG+LQ R A+E + G S +S+ T +I+G+N GSK KAQ+ Sbjct: 864 AQTLVGKTIVVTGSLQGFTRDSAKEAIVSRGGKASGSVSKNTYCVILGENAGSKATKAQE 923 Query: 704 LGVKIMNEEQFLFLLQQYN 722 LG+ ++NE+QF LL+ N Sbjct: 924 LGIPMLNEQQFNALLKTGN 942 >gi|330879787|gb|EGH13936.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea str. race 4] Length = 347 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 124/350 (35%), Positives = 191/350 (54%), Gaps = 11/350 (3%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + L E+ H+ Y+ +P I D EYD L A+ P L P+ Sbjct: 1 MKAVETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127 P ++G + +V H +P LSL + D+ +F R+ + + Sbjct: 58 PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQ 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP L P+++E Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEV++SK F LN + +G K +ANPRNAA+G LR+L+ R L F +GLG+ Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 TS A +L+ ++ G PV++ ++ AN + YY ++ R TL Y+IDG+V+K Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSHELKLANGVEECLDYYRDIGERRLTLSYEIDGVVFK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 V+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPV Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPV 347 >gi|225631070|ref|ZP_03787806.1| DNA ligase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591237|gb|EEH12383.1| DNA ligase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 508 Score = 304 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 210/535 (39%), Positives = 309/535 (57%), Gaps = 36/535 (6%) Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243 +EVRGE+YIS +DFL LN+ +ANPRNAA+G L++L+ + Sbjct: 4 RLEVRGEIYISNSDFLKLNEN------DEFANPRNAAAGSLKQLDANITASRP--LRYFA 55 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 K Q E+L K+ LGF VN ++ G++ +YNE+ + R L YDIDG+V Sbjct: 56 YSLIGGAEKSQSEVLNKLEALGFCVNEHQSLTSSLDGMLKFYNEVYNCRYNLDYDIDGIV 115 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YKV++ LQ +LG ++PR +++KF+ A T+L I IQ+GRTG+LTPVA L PVN+ Sbjct: 116 YKVNDLVLQNRLGNTHKAPRSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVNV 175 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG L++ A+LHN+D IK +DIR GD V +KRAG+VIP++V++ + R P Sbjct: 176 GGVLVSRASLHNQDEIKR-----------KDIREGDIVTIKRAGDVIPQIVEVSRDSRLP 224 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + F FP CP C S+V + AA RC AC AQ +E+LKHFVS+DAF+I Sbjct: 225 NTPEFVFPEVCPECGSKVRQVEGE------AAVRCPEEFACKAQIIEKLKHFVSKDAFDI 278 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 GLG +Q++FF+ I+ DIFTL+ R +E G+G S+ +L ++I Sbjct: 279 VGLGDKQIEFFYD----LGLIKQIPDIFTLEERL--DEFNLEEQSGWGKKSIAHLLNAIQ 332 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 RR I+L+RFIFSLGIR +G A LA YY+SY N+ + + + D L+ + Sbjct: 333 SRRVITLDRFIFSLGIRFIGQVAAELLADYYVSYDNWYNSMIEL----SSDNTELVGIDG 388 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 +G +A+++ F+ NI + L + + S K +VFTG L + R Sbjct: 389 IGKKVAESLESFFSKEHNIKMLNDLTACLQILPVSSNSSNSVLNN-KIIVFTGKLLAMSR 447 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+ LGA VS+ LS KTD +I G+ PGSK +KA +LGV+I++E+Q+ ++ Sbjct: 448 GEAKVRAKTLGAKVSSHLSAKTDYLIAGEKPGSKYKKAVELGVEILDEDQWHKVI 502 >gi|4235378|gb|AAD13192.1| NAD-dependent DNA ligase [Thermus filiformis] Length = 537 Score = 304 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 191/583 (32%), Positives = 302/583 (51%), Gaps = 49/583 (8%) Query: 61 AFPDLARSEDPNGPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119 FP+ P+ P ++G + V H SL+ + E++ F R+ R Sbjct: 1 RFPEFK---SPDSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERLERALG 57 Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179 +K +T+E K+DG + + YE+G V+ A RGDG GE+V+ + IPTIPR L Sbjct: 58 RK--RPFLYTVEHKVDGLSVNLYYEEGVLVFGATRGDGEVGEEVTQNLLTIPTIPRRLKG 115 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238 P+ +EVRGEVY+ FL LN+E+ G K + NPRNAA+G LR+ +P R L Sbjct: 116 V-PDRLEVRGEVYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRA 174 Query: 239 FVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 + LG E K QYE+L ++ GFPV +G +A G+ Y + R LP+ Sbjct: 175 TFYALGLGLEESGLKSQYELLLWLKEKGFPVEHGYEKALGAEGVEEVYRRFLAQRHALPF 234 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 + DG+V K+D+ +L ++LG AR+PR+ +++KF ++ TRLLD+ Q+GRTG +TPV Sbjct: 235 EADGVVVKLDDLALWRELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGV 294 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 LEPV I G+ ++ TLHNE YI+ L DIR+GD VLV +AG VIP+V+ ++ Sbjct: 295 LEPVFIEGSEVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVL 343 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 R + +P +P CP C R+V++ HRC L C A++ E ++H+ S Sbjct: 344 KERRTGEERPIRWPETCPECGHRLVKE--------GKVHRCPNPL-CPAKRFEAIRHYAS 394 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R A +IEGLG++ ++ + +R AD++ L++ + G+ S N Sbjct: 395 RKAMDIEGLGEKLIERLLEK----GLVRDVADLYHLRKEDLLG------LERMGEKSAQN 444 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L I + ++ LER +++LG+ VG +AR+LA+ + + + + + Sbjct: 445 LLRQIEESKHRGLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELLEVEEVGEL 504 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 A+AI+E ++P V L + + E Sbjct: 505 ----------TARAILETLKDPAFRDLVRRLKEAGVSMESKEE 537 >gi|294790698|ref|ZP_06755856.1| DNA ligase, NAD-dependent [Scardovia inopinata F0304] gi|294458595|gb|EFG26948.1| DNA ligase, NAD-dependent [Scardovia inopinata F0304] Length = 815 Score = 304 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 155/510 (30%), Positives = 263/510 (51%), Gaps = 32/510 (6%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 +K + + + L QA + + + YY PI D+ YD + + Sbjct: 18 QKLKDLNVADLDTSQAAHLWAKVASWVEDDQLAYYVNDSPISSDAAYDERMKTLQRLEAH 77 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP L ++P +++GG + V H P +SL+ ++++++L+ + + + Sbjct: 78 FPQL---DNPQSLTHRVGGTFSNDFASVRHPSPMMSLDDVFSLQELKSWYQGVRDDLEWP 134 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-- 179 + T E KIDG + + Y KG RGDG GED++ +R I +IP L+ Sbjct: 135 SSQPLPMTCEVKIDGLALNLIYRKGILEQGLTRGDGIVGEDITMNVRTISSIPTQLTGKA 194 Query: 180 -NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237 +IP+++E+RGEV++ +DF LND+ G+ P+ANPRNAA+G LR+ +P +R+L+ Sbjct: 195 EDIPDLVEIRGEVFMRFDDFTRLNDQAEREGKAPFANPRNAAAGSLRQKDPRITASRHLS 254 Query: 238 FFVHGLGKTSEIFAKGQYEMLQK------MRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 F+ HG+G + ++ G PV+ RQA +F I + Sbjct: 255 FYAHGIGSLVWPQGSNHPSIERQSQAYDLYAAWGIPVSTHTRQARSFTDITDMISYYGEH 314 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R ++ + +DG+V K+D+ +LQ++LG AR+PRW ++K+ ++ +T L+DI +Q+GRTG Sbjct: 315 RYSIEHALDGIVVKIDDLALQRRLGSTARAPRWATAYKYPPEEVNTDLIDITVQVGRTGR 374 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVA L+PV + G+ ++ TLHN ++ + I +GD V+V++AG+VIP Sbjct: 375 VTPVAHLKPVKVAGSTVSRTTLHNAYEVER-----------KGILIGDLVVVRKAGDVIP 423 Query: 412 KVVDII---VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 ++V + +R +PF P CP C + + + + RC +C AQ Sbjct: 424 ELVGPVVAARPDRKSQLRPFLMPKTCPSCGALLAPE-----KEGDKDIRCPNVESCPAQL 478 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 R+ H SR AF+IE LG+Q E Sbjct: 479 ANRVLHLASRQAFDIEHLGEQSALALTNPE 508 Score = 208 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 15/197 (7%) Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587 + +++ +K + L R + +L IRHVGA AR L++ + + Q +Q Sbjct: 622 DAQPSRTTLAMFEEFDKAKRADLWRVLVALSIRHVGAPTARLLSRKFKTLQALSQA---- 677 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ-----NPRNICAVEALLKEVSPSIGRHEKN 642 L++V VG+ IAQ+I ++ + + E Sbjct: 678 ------SVEDLLQVDGVGEEIAQSIERWFSHARDPQDWRGKILRSWTAAGIGQQAAEENT 731 Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702 + K +V TGTL+ R A+E + + G S +S+KT ++VG + GSK KAQ Sbjct: 732 AEQTLTGKTVVVTGTLEDFSRESAKEAIEERGGKASGSVSKKTSYVVVGASAGSKAVKAQ 791 Query: 703 QLGVKIMNEEQFLFLLQ 719 +LG+ +++E+QF LL+ Sbjct: 792 ELGIPMLDEDQFKALLE 808 >gi|308235729|ref|ZP_07666466.1| DNA ligase (NAD(+)) [Gardnerella vaginalis ATCC 14018] gi|311114720|ref|YP_003985941.1| NAD-dependent DNA ligase LigA [Gardnerella vaginalis ATCC 14019] gi|310946214|gb|ADP38918.1| NAD-dependent DNA ligase LigA [Gardnerella vaginalis ATCC 14019] Length = 960 Score = 303 bits (776), Expect = 6e-80, Method: Composition-based stats. Identities = 163/531 (30%), Positives = 262/531 (49%), Gaps = 51/531 (9%) Query: 1 MKKRQLIPIEA----------LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDA 50 + K + ++A L+ EQA + + L YY P D+ YD Sbjct: 78 ISKLEPTDVDAIALSKLEPSLLTSEQAARLWAKLAAWAQSDQIAYYVDDSPSSSDAAYDT 137 Query: 51 LKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKF 110 R ++ FP L + P P +++GG + V H +SL+ ++++E+L+ + Sbjct: 138 RMRVLSSLESTFPIL---DTPQSPTHRVGGTFSNDFASVKHPSRMMSLDDVFSLEELKSW 194 Query: 111 ITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI 170 I R + + + T E KIDG + + Y G RGDG +GED+S +R I Sbjct: 195 YDSIIRDLKWPQNKPLPMTCEVKIDGLALNLIYRNGTLEQGLTRGDGVTGEDISLNVRTI 254 Query: 171 PTIP----RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR 226 IP S +IPE +E+RGEV++ DF LN E +G+ +ANPRNAA+G LR+ Sbjct: 255 EEIPTQLKCENSDDIPEFVEIRGEVFMKWADFRKLNIEQEDLGKPAFANPRNAAAGSLRQ 314 Query: 227 LNPT-DITRYLNFFVHGLGKTSEIF--------------AKGQYEMLQKMRCLGFPVNNG 271 +P TR L+F HGLG + Q + + + G PV+ Sbjct: 315 KDPRITATRRLSFIAHGLGDLKWKDSVRNDSEHKSHKQTSFNQSDAYELYKKWGIPVSPY 374 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 R+ +F I R+++ + +DG+V KVD+ +LQ++LG +R+PRW I++K+ Sbjct: 375 TRKVTSFEQIEDMIEYYGEHRNSIIHALDGIVVKVDDRALQRELGSTSRAPRWAIAYKYP 434 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +T L DI +Q+GRTG +TPVA L+PV + G+ I+ TLHN ++ Sbjct: 435 PEEVNTVLKDIVVQVGRTGRVTPVAVLDPVTVAGSTISRTTLHNPYEVE----------- 483 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPK 448 + + +GD V+V++AG+VIP++V ++ R + + F P +CP C S++ Sbjct: 484 HKGVLIGDTVVVRKAGDVIPELVGPVLKYRDGNESKLRKFVMPEYCPSCGSKLA-----P 538 Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 + RC C AQ ER+ + SR AF+IE LG+ ED Sbjct: 539 AKEGDKDIRCPNVENCPAQLTERIINLASRHAFDIENLGESSALALTNPED 589 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 50/198 (25%), Positives = 96/198 (48%), Gaps = 17/198 (8%) Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 + + L + K ++ +L R + +L IR +G AR +A + S +N ++ Sbjct: 753 RPSETTRAMLEEIAQKGKSATLWRVLVALSIRRLGPPTARLIAARFGSIENISKA----- 807 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI-----CAVEALLKEVSP--SIGRHEK 641 L ++ VG IAQA+ ++++ +N + + S + Sbjct: 808 -----SVEDLTQIDGVGPEIAQAVYDWFEKSKNPQDWRSEVLRKWNEAGVVGSSDSSNAD 862 Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701 ++ + K +V TG+L+ R A+E ++ G ++ +S+KT +IVG+N GSK KA Sbjct: 863 SIEQTLSGKTVVVTGSLEGFTRDSAKEAISSRGGKAASSVSKKTYCVIVGENAGSKATKA 922 Query: 702 QQLGVKIMNEEQFLFLLQ 719 ++LG+ +++E QF LL Sbjct: 923 EELGIPMLDENQFKILLN 940 >gi|261337889|ref|ZP_05965773.1| DNA ligase, NAD-dependent [Bifidobacterium gallicum DSM 20093] gi|270277364|gb|EFA23218.1| DNA ligase, NAD-dependent [Bifidobacterium gallicum DSM 20093] Length = 906 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 162/517 (31%), Positives = 265/517 (51%), Gaps = 38/517 (7%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 K + + + AL E+AR + + YY S PI D+ YDA R +A+ A+ Sbjct: 27 KLETVDVPALGAERARTLWRKVASWVEADQVAYYIDSAPISSDAAYDARLRFLEAMERAY 86 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P+L + P+ P +++GG + V LSL+ +++I++LR++ + Q + Sbjct: 87 PEL---DVPSSPTHRVGGSFSNEFVSVPQPSQMLSLDDVFSIQELREWYEGVRADLQWPE 143 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---- 178 + T E KIDG + + Y G RGDG GED++ +R I +IP L+ Sbjct: 144 GERLPMTCEVKIDGLALNLIYRDGVLSQGLTRGDGKIGEDITLNVRTISSIPGNLTEAGA 203 Query: 179 --LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRY 235 +IP ++E+RGEV++ + F ALN+ G+ P+ANPRNAA+G LR+ +P R+ Sbjct: 204 SLGDIPHMVEIRGEVFMRWDTFHALNERNEQDGKTPFANPRNAAAGSLRQKDPRITAERH 263 Query: 236 LNFFVHGLGKTSE---------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYN 286 L+F+ HG+G Q + + G PV+ R TF I+ + Sbjct: 264 LSFYAHGIGTLDWGEGKPVDAVDVVHDQSQAYDLYQRWGIPVSPHNRMVGTFDEILDMID 323 Query: 287 EMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQI 346 R + + +DG+V KVD+ +LQ++LG+ +R+PRW I++K+ ++ T+L DI +++ Sbjct: 324 YYGQHRDDIEHPLDGIVVKVDDLALQRRLGQTSRAPRWAIAYKYPPEEVHTKLRDIIVEV 383 Query: 347 GRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRA 406 GRTG +TP A L+PV + G+ ++ TLHN +K + I +GD V+V++A Sbjct: 384 GRTGRITPAAVLDPVYVAGSTVSRTTLHNGYEVKR-----------KGILIGDIVVVRKA 432 Query: 407 GEVIPKVVDIIVNERHPDAQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463 G+VIP++V ++ R F P+ CP C + + + RC + Sbjct: 433 GDVIPELVGPVIEARKGHEDQLREFQMPTTCPSCGATL-----EYDMEGGKDLRCPNHES 487 Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 C AQ ER+ + SR AF+IE LG+Q ED Sbjct: 488 CPAQLTERIINMGSRKAFDIEQLGEQSAVALTNPEDQ 524 Score = 207 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 50/209 (23%), Positives = 99/209 (47%), Gaps = 15/209 (7%) Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575 ++ T ++ + +L + I ++ L+R + +L IRHVG AR +A+ + Sbjct: 692 KRVRGETSVQPQYVCPSETTRSLLEEIEHAKHAELDRVLVALSIRHVGPPTARLIAQRFG 751 Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP-----RNICAVEALLK 630 + L VP +G +AQAI++++ + + + Sbjct: 752 TLDALMHASK----------DELESVPGIGSEVAQAILDWFADADDPTSWHGSILARWKA 801 Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690 ++ +E K +V TG+LQ+ R A+E + G + +S+KTD +++ Sbjct: 802 AGVEMKAPESSSLPKTLEGKTVVVTGSLQQFTRDSAKEAIVNRGGKAAGSVSKKTDYVVI 861 Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G+ GSK +KA++LG+ +++E QF+ LL+ Sbjct: 862 GEAAGSKAKKAEELGIPMLDEAQFVHLLE 890 >gi|302538378|ref|ZP_07290720.1| DNA ligase, NAD-dependent [Streptomyces sp. C] gi|302447273|gb|EFL19089.1| DNA ligase, NAD-dependent [Streptomyces sp. C] Length = 699 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 189/736 (25%), Positives = 304/736 (41%), Gaps = 81/736 (11%) Query: 12 LSIEQA-----RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 ++I A R E + YY + D+ +D L A A+P+ Sbjct: 15 MTITTASALADRDEYADAIATAVKASAAYYGSGGSPLDDASFDLLVSLIQAYEAAYPEHV 74 Query: 67 RSEDPNGPLNKI-GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 DP P K+ GG + +V H+ LSL + +DL + + R Sbjct: 75 ---DPASPTGKVAGGAVAGG--EVAHTAAMLSLANAFGPQDLLDWEASLVRRLGGPVTGG 129 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + +EPK+DG + RY G+ V RGDG SGEDVS I I +P L L + Sbjct: 130 --YAVEPKLDGASLAARYRAGRLVQLVTRGDGTSGEDVSHAIGTIVGLP--LELAVEATF 185 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGL 243 EVRGEV ++ F N G P++N RN A+G LR + F L Sbjct: 186 EVRGEVLLTAEQFERANRTRAEHGAGPFSNARNGAAGTLRAKGRAYTVEMSFWAFAAVEL 245 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGV----RQANTFHGIVSYYNEMKSIRSTLPYDI 299 + + E++ + G A T G + + +R+ LP+ I Sbjct: 246 EGGTALPGTTHSEVMAYVAAAGVRTAADTAAGLTVAATAAGAQEQVDRIAGMRAGLPFGI 305 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V K+D + Q G +R P W ++K A + TRLLD+ +GRTG+L P A LE Sbjct: 306 DGVVVKLDSLAEQAAAGTGSRHPHWATAYKLAAVERRTRLLDVTWAVGRTGVLAPTAVLE 365 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G+++ +ATLHN I R + +GD V V +AG+VIP+V +V Sbjct: 366 PVEVDGSVVRHATLHNPADIAR-----------RGLLIGDTVTVYKAGDVIPRVEAPVVE 414 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R +P P CP CQ + + RC ++ + + RD Sbjct: 415 LRTGAERPVVVPEVCPGCQGEID--------RSQERWRC--AQPADCGRIAAILYAAGRD 464 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 +I+GLG++ + + E +R AD+FTL + L Sbjct: 465 QLDIDGLGERYVRALVEEEG----VRDVADLFTLD-------PAALARAAGSEKRAVKLA 513 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 + I + + L R +LG+ G ++R +A+++ + + + Sbjct: 514 ERIEAAKALPLSRVFCALGVVGTGRGMSRRIARHFGTMEAVRAADAAAMTA--------- 564 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-------EKNVSSEIENKKL 652 V LVG+ A AIV Q ++ L + + + + + + Sbjct: 565 -VELVGETKAAAIVA--QVAELGPVIDKLAAAGVRPVEPQVPAAAPAGEAEAGPLAGQNV 621 Query: 653 VFTGTLQK-----IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 V TG + R + +E + + G S +S KT +++ G+ GSK+ KA+ G++ Sbjct: 622 VVTGKMTGALAAYDTRDRVRELIERAGGRSSGSISGKTTLLVAGEKAGSKVAKAEAAGIE 681 Query: 708 IMNEEQF----LFLLQ 719 I+ EE F LL+ Sbjct: 682 ILGEEAFAVRIAALLE 697 >gi|320537878|ref|ZP_08037793.1| DNA ligase, NAD-dependent [Treponema phagedenis F0421] gi|320145297|gb|EFW36998.1| DNA ligase, NAD-dependent [Treponema phagedenis F0421] Length = 648 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 165/717 (23%), Positives = 293/717 (40%), Gaps = 93/717 (12%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 LE+ I YH D YY I DSE+DAL A+ +L + Sbjct: 9 ELEKLIRYHQDLYYNKEA-EIPDSEFDALWDELRALEPEN-ELFFTVPKES--------- 57 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 + K +H IP S EK N E + ++ F ++ K+DG + ++ Sbjct: 58 SDGFPKASHIIPMGSQEKAANPEAFTAWALKM---------PFTQFLVQYKLDGASLELQ 108 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIP------TIPRVLSLNIPEIIEVRGEVYISKN 196 YE+G+FV A RGDG G+D++A +R + + P +RGEV ++K Sbjct: 109 YERGRFVRAVTRGDGKIGDDITANVRKMQGVVSELQGESAPAGAQPFSGGIRGEVLMTKE 168 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 AN RNAA+G+++R + + L + + E G Sbjct: 169 IHKKFYA--------DKANCRNAANGLMKRKDGSGSEHLLVICYDAVQGSPEKPFTGTAP 220 Query: 257 MLQKMRCLGFPVNN-----GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 ++ L + N ++ N+ ++ + + IR +LPYDIDGLV K + Sbjct: 221 FSTELEKLAWLKRNGFSTVEIQVCNSIQEVIDWRAHVMDIRESLPYDIDGLVIKNNLID- 279 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 P I+ KF+ ++A T L +++ TP+A +PV + G + A Sbjct: 280 --PDDVSRPRPEKQIAFKFSLEEAITTLREVEWSES-GATYTPIAITDPVRLAGTTVKRA 336 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 L N + I + ++++G +V++ + GE+IPK+ ++ N + P Sbjct: 337 NLANPNMITDM-----------NLKIGSKVVITKRGEIIPKIETLVENT--DECTEIPMP 383 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + C C S ++ + AC R++ +++ +I G + Sbjct: 384 TVCGTCGSSLLNEG---------TRLFCPNAACPKLIHHRIEKWIA--TLDIRDFGINLI 432 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F S + D++TL S I G++S ++ +++ ++ ISLE Sbjct: 433 QRLFDSNK----VNSIVDLYTLTVEDLAS------IERMGEISAKKVHSALHAKKEISLE 482 Query: 552 RFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 FI I +G + L + + + + D V G+++AQ Sbjct: 483 TFIAGFDIDGIGVTMVEKLTQAGFNTLDKLFEA----------DEQKFSTVYQFGEVLAQ 532 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEY 669 +V Q + + AL+++ I + + FTG L I+R +A++ Sbjct: 533 NLVRGLQTLK--AEMTALIEKGFIPIKPPAAPDENAPLHGMSFCFTGELTAIKRSEAEQL 590 Query: 670 VTQLGAVVSAILSRKTDIIIVG-DNPGS-KLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 V + G V + +++ ++ GS K +KAQQLG I+ EE F LLQ+ + T Sbjct: 591 VKEKGGSVKSSVTKGLSYLVTNTPESGSAKNKKAQQLGTAIITEEAFFALLQKEHKT 647 >gi|328947954|ref|YP_004365291.1| DNA ligase [Treponema succinifaciens DSM 2489] gi|328448278|gb|AEB13994.1| DNA ligase [Treponema succinifaciens DSM 2489] Length = 651 Score = 300 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 149/707 (21%), Positives = 285/707 (40%), Gaps = 83/707 (11%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K +S LE+ I + YY + I D+E+D L ++ A P L +K+ Sbjct: 23 KRISELEKLIEKYQASYYN-GEAEISDAEFDKLWDELKSLDSANPIL----------HKV 71 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + + + K H +P S EK E+ + + + + +E K+DG Sbjct: 72 GAD-SGNFQKSPHVMPMGSQEKAATPEEFLDWAKK---------HDYSEYLVEYKLDGAS 121 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + ++Y G F+ A RGDG G+ ++A + + + + L +RGEV ++ Sbjct: 122 LELQYSDGIFLRAVTRGDGTVGDVITANAKKMQGVVQELKEKFTG--GIRGEVIMTHQVH 179 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 AN RNAA+G+++R + + + L Sbjct: 180 EKFFS--------DKANCRNAANGLMKRKDGEGSENLTLITYDVWASEGKQPFNDEEGKL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ GF ++ + ++ Y + + +R L YDIDGLV K + Sbjct: 232 DFLQRNGF-NVVPLKICKSTQEVIDYRSSVMELRKNLDYDIDGLVVKERAVDHED---AL 287 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 P I+ KF+ ++A + + +I+ TPVA +PV++ G + A+L N + Sbjct: 288 RDRPDRQIAFKFSLEEAVSIVRNIEWNE-TGATYTPVAVFDPVDLNGTTVKRASLVNPNL 346 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I+ L ++++G V+V + GE+IPK+V ++ + + P C C Sbjct: 347 IRAL-----------NVKIGSHVVVVKRGEIIPKIVSVLPEQ--ENLPSVKIPEKCACCG 393 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 + ++ + C + LK + +I LG+ + F+++ Sbjct: 394 TSLIDE--------GTRLFCPNKNCEKRILHQLLKWI---NVIDIRDLGETLITSLFETK 442 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS--VTNLYDSINKRRNISLERFIFS 556 +R +D+++L + S ++ SI RR I L +FI Sbjct: 443 K----VRSISDLYSLTASDLVPYFLNSESMEKEKKSLGAEKVFASIQSRRKIPLAKFIAG 498 Query: 557 LGIRHVGAEIAR-SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 I +G + +A + + Q + V + +A +VE Sbjct: 499 FDIEGIGETVVETLIAGGFNTLQKIFDAKE----------EEIAGVYRFAETLAHTLVEG 548 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 Q N +++L+ + S+ ++ K FTG L ++R AQ V Q G Sbjct: 549 IQE--NREEMQSLVSSGTISVIEGAAQ--GKLAGKSFCFTGELVSMKRQDAQNLVKQNGG 604 Query: 676 VVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 V + + + ++ D + SK +KA +LG+ +++E++FL L++ Sbjct: 605 AVKSSVVKGLSFLVTNDTSSGSSKNKKAMELGIPVIDEKEFLALIKD 651 >gi|242279308|ref|YP_002991437.1| DNA ligase (NAD(+)) [Desulfovibrio salexigens DSM 2638] gi|242122202|gb|ACS79898.1| DNA ligase (NAD(+)) [Desulfovibrio salexigens DSM 2638] Length = 614 Score = 300 bits (768), Expect = 6e-79, Method: Composition-based stats. Identities = 157/710 (22%), Positives = 276/710 (38%), Gaps = 102/710 (14%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ KE+ L + H++ Y + P I D+ YD L + + P L E P Sbjct: 1 MKNKNKEIKDLVALLEKHNEAY-RRGMPTISDARYDELTEQLRDLDPENPFLTNVE-PEN 58 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 K+ +V H P LS EK + E+L +F++R+ + + + + + PK Sbjct: 59 FSEKV---------EVRHPRPMLSTEKAYTTEELERFVSRVEKEAKAMGIKEVTYRITPK 109 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG + GK A RG+G G ++S+ + + GE+ Sbjct: 110 LDGLAAR---DDGKVF--ATRGNGEVGYEISSAFTKGVVA-------VGGRGQGVGEIVC 157 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 S F + +PRN GI+ + ++ Sbjct: 158 SLEYFDEHLAN-------SFEHPRNMVVGIITSDKVNEASKQAL---------------- 194 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM-KSIRSTLPYDIDGLVYKVDEFSLQ 312 Q P + ++ +VS E+ + Y +DG+V +V + +LQ Sbjct: 195 -----QDEAVRFVPYSTLPKKVVNGEELVSRVWEITDELWEAADYPLDGMVAEVTDTALQ 249 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG A RW I+ K + A T + I Q+GR G +TPV ++PV++ GA I N T Sbjct: 250 ERLGATAHHYRWQIAIKKKGESAVTEVEGIRWQVGRMGAVTPVMEVKPVSVSGATIRNVT 309 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 HN ++ I +G + + R+GEVIPK+ ++I AQ P+ Sbjct: 310 AHNAGMLRDQS-----------IGIGATIRIIRSGEVIPKLEEVIKP-----AQEVELPA 353 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + + + +C A+ +RL+++ D Sbjct: 354 ECPSCGAELFWQND---------FLKCPDFSCPARVEQRLEYWFKTLGNA---------D 395 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 +F K + ++ + K+ LY I+K + R Sbjct: 396 WFGKKTIAKLVKAGHNSLESVYTMAEDDFQKLGFGPVQSTNLAEALY--ISKTKETDDWR 453 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+ + GI +G +R L Y+ + N LI + GDI + ++ Sbjct: 454 FLAAFGIPDLGKADSRKLLGYFK-----------LEDVVNVKQEQLIELHGFGDITSHSV 502 Query: 613 VEFYQ--NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 E + +E + +++ S I K +VFTG +++ R Q Sbjct: 503 TEGIAAIKETILHMLEFDFNLRRTPLVSETESMESPITGKGIVFTGKMEQGSREDMQAMA 562 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 +LGA V ++ KTD ++ G G K+E A+ GV+IM E +F+ ++ Sbjct: 563 RRLGAKVQTSVTGKTDFLVCGSKVGAKKIESAKAKGVEIMKESEFMDIVN 612 >gi|4235376|gb|AAD13191.1| NAD-dependent DNA ligase [Thermus filiformis] Length = 546 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 186/591 (31%), Positives = 294/591 (49%), Gaps = 48/591 (8%) Query: 72 NGPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G + V H SL+ + E++ F R+ R +K +T+ Sbjct: 1 DSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERLDRALGRK--RPFLYTV 58 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K+DG + + YE+G V+ A RGD IPTIPR L P+ +EVRGE Sbjct: 59 EHKVDGLSVNLYYEEGVLVFGATRGDXXXXXXXXXXXXTIPTIPRRLKGV-PDRLEVRGE 117 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VY+ FL LN+E+ G K + NPRNAA+G LR+ +P R L + LG E Sbjct: 118 VYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLEE 177 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K QYE+L ++ GFPV +G +A G+ Y R LP++ DG+V K+D+ Sbjct: 178 SGLKSQYELLLWLKEKGFPVEHGYEKALGAEGVEEVYQAXXXKRHALPFEADGVVVKMDD 237 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +L +LG AR+PR+ I++KF ++ TRLLD+D Q+GRTG +TPV LEPV + G+ + Sbjct: 238 LTLWGELGYTARAPRFAIAYKFPAEENETRLLDVDFQVGRTGRVTPVGILEPVFLEGSEV 297 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + TLHNE YI+ L DIR+GD VLV +AG VIP+V+ ++ R + +P Sbjct: 298 SRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGEERPI 346 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 +P CP C R++++ HRC L C A++ E ++HF SR A +I+GLG+ Sbjct: 347 RWPETCPECGHRLLKE--------GKVHRCPNPL-CPAKRFEAIRHFPSRKAMDIQGLGE 397 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + ++ AD++ L++ + G+ S NL I + + Sbjct: 398 KLIERLLEK----GLVKDVADLYRLRKEDLVG------LERMGEKSAQNLLRQIEESKRR 447 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 LER +++LG+ VG +AR+LA + + + + + Sbjct: 448 GLERLLYALGLPGVGEVLARNLAARFGNMDRLLEASLEELLEVEEVGEL----------T 497 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 A+AI+E ++P V L + + + ++ V TG L Sbjct: 498 ARAILETLKDPAFRDLVRRLKEAGVEMEAK--EKGGEALKGLTFVITGELS 546 >gi|332297848|ref|YP_004439770.1| DNA ligase [Treponema brennaborense DSM 12168] gi|332180951|gb|AEE16639.1| DNA ligase [Treponema brennaborense DSM 12168] Length = 646 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 150/714 (21%), Positives = 278/714 (38%), Gaps = 77/714 (10%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + +A + L I + D YY + I D+E+DAL + A P L Sbjct: 1 MDLFEAS-RVQELAALIEKYQDSYYN-GEAEISDAEFDALWDELKQLDPAHPVL------ 52 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 ++IG + + + K +H +P S EK + E+ + + + +E Sbjct: 53 ----HRIGSD-SGNFLKASHRMPMGSQEKAADPEEFLAWAEK---------HPYDEYLVE 98 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVR 188 K+DG + ++Y+ G F A RG+G G+D++ R + + L+ P +R Sbjct: 99 YKLDGASLELQYDNGVFAKAVTRGNGAVGDDITVNARKMGGVKLRLTRDSSPCPYTGSIR 158 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GEV + + AN RNAA+G++RR + + YL+ + + Sbjct: 159 GEVVMDHDVHRTHF--------PDKANCRNAANGLMRRKDG-EGCEYLHVVCYDALFSDH 209 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 FA Q ++ C + T ++ Y ++ R+ LPYDIDGLV K Sbjct: 210 QFADEQDKIAWLSACGFQ--TVPLEICKTAQEVIDYRAKVMESRAELPYDIDGLVVKERR 267 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 P I+ KF+ ++A + + +I+ TP+A +PV + G + Sbjct: 268 ID---PEDAARARPDRQIAFKFSLEEAVSVVREIEWSES-GATYTPIAVFDPVELAGTTV 323 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A+L N + ++ L +R+G ++V + GE+IPK+ ++ + P Sbjct: 324 KRASLVNPNTMRAL-----------GVRLGSHIVVTKRGEIIPKIESVVPQSDSAEDSPD 372 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 + + R C K D + Sbjct: 373 ESATCAVPSECGTCRT---ALVDEGTRLYCPNKACPKRILHRLEKWITVLDI-------R 422 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS--VTNLYDSINKRR 546 ++ + +R +D++TL ++ T E L S +Y S+ RR Sbjct: 423 DLGTTLIRALFDSGRVRSVSDLYTLTVQELTPYFLAEESLAKEKKSLGAEKVYKSLQSRR 482 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 ISL F+ I +G + L + + + A + V GD Sbjct: 483 KISLAAFVAGFDIEGIGETLVEKLVASHPDMDTLEKLLGAAEA-------EIALVNGFGD 535 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I AQA+V+ N + +L+ + + S ++ + FTG L ++R +A Sbjct: 536 ITAQALVQGLAE--NAAEMRSLVDSGTIEL--EAVVSSGKLSGRSFCFTGELS-VKRSEA 590 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++ V LG + + + ++ ++ SK +KA LG+ +++E F L+ Sbjct: 591 EQAVKALGGTTKSSVVKGLSYLVTNDTESGSSKNKKAAGLGIPVIDEAAFWELV 644 >gi|32491184|ref|NP_871438.1| hypothetical protein WGLp435 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|81741654|sp|Q8D2B9|DNLJ_WIGBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|25166391|dbj|BAC24581.1| lig [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 591 Score = 297 bits (760), Expect = 5e-78, Method: Composition-based stats. Identities = 188/621 (30%), Positives = 321/621 (51%), Gaps = 50/621 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + ++ +L ++I ++ YY + ++ D +YD+ + + + Sbjct: 9 KIKTKILNLRKKIEMWNNNYYVKNLSLVSDEKYDSTLFELNELEKKYSMFLN----TSYS 64 Query: 76 NKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 NKI + + K+ H LSLE I+N ++L F ++ + + ++ E KI Sbjct: 65 NKIVAKNICNKFKKIKHLSNMLSLESIFNYKNLLNFHEKVKKNL--FYNEKRYYCCELKI 122 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPEIIEVRGEV 191 DG I + Y+ G A+ RGDG GEDV+ I +IP + +L+ P+ IE+RGEV Sbjct: 123 DGLAINLIYKNGILDSASTRGDGLQGEDVTKNALEIKSIPHILKKNNLSFPKKIEIRGEV 182 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249 +I + F +N + + +K ++N RN ASG LR++NP R L+F+ +G+G + + Sbjct: 183 FIKLSTFNKINKMLKSKRKKLFSNARNMASGSLRQINPKITKNRSLSFYGYGIGYVNEKK 242 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + Q++ L+ + G P+ + + + ++Y + IR L ++IDG+V KV+ Sbjct: 243 YYYDQHDALKLINSWGIPIEKNTELCKSLNEVKNFYEKSIKIRDYLDFNIDGIVVKVNSM 302 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQK+LG ++ PRW I++KF+ ++ T++L ++ +GRTG++TPVA+L+PV G +I Sbjct: 303 KLQKKLGCSSKYPRWAIAYKFSSEEKCTKILGVNFNVGRTGVITPVAKLKPVYFMGTIIK 362 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ++LHN+D I L I + D V +K++G+VIPK+ +I +R + + Sbjct: 363 YSSLHNKDIIDKL-----------GIMINDTVCLKKSGDVIPKISRVIFEKR-KNVKEII 410 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP C C+S++ L K CTGG C AQ+ + L HFVSR+A NI+G+G + Sbjct: 411 FPKTCIFCKSKIEFCLRKKN------LYCTGGFLCYAQRKQLLNHFVSREALNIKGMGNK 464 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + + + I+ P+DIF L +T KI + G G S NL I K + Sbjct: 465 IISQLIEKK----IIKYPSDIFKL------NTDKIIFLKGMGLKSSENLIKEIIKSKTTE 514 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R I+ +GI +VG + +LA YY + NF N + L + +G + Sbjct: 515 LYRVIYGIGIPNVGIYTSMNLANYYKNISNFI----------NTSYEDLRSIKGIGSFTS 564 Query: 610 QAIVEFYQNPRNICAVEALLK 630 I +F ++ RNI + LL Sbjct: 565 NCIKKFLKDKRNISIISDLLN 585 >gi|42527046|ref|NP_972144.1| DNA ligase, NAD-dependent [Treponema denticola ATCC 35405] gi|81412203|sp|Q73MH0|DNLJ_TREDE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|41817470|gb|AAS12055.1| DNA ligase, NAD-dependent [Treponema denticola ATCC 35405] Length = 645 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 156/724 (21%), Positives = 280/724 (38%), Gaps = 104/724 (14%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 K + LE+ I H D YY ++P I D+E+DAL A+ + Sbjct: 4 EKRILDLEKTIKKHQDLYYN-AQPEISDAEFDALWDELKALDPQNKLFFTVPLES----- 57 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 K H IP S EK + + ++ + ++ K+DG Sbjct: 58 -----TEGFAKSEHIIPMGSQEKAADPPSFEAWALKM---------PFKEYIVQYKMDGA 103 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSAC-------IRAIPTIPRVLSLNIPEIIEVRGE 190 + ++YE+G FV A RGDG G+D++ I+ I P +R E Sbjct: 104 SLELQYEEGHFVRAVTRGDGKIGDDITENVLKMKGLIKDITVNAGPAYGTKPFSGGIRCE 163 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 V + ++ AN RNAA+G++++ N F + + Sbjct: 164 VIMLRSIHQKYFK--------DKANCRNAANGLMKKKNGELCEHLNLFAYDAVQGSIGRP 215 Query: 251 AKGQYEMLQ------KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 G ++ GF V+ + ++ Y + IR +L YDIDGLV Sbjct: 216 FTGDAPFKTESEKLVWLKKAGFNCVE-VKYCKSIAEVIEYRAHVMDIRPSLDYDIDGLVI 274 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 K D + P I+ KF+ ++A T L +I+ TP+A +EPV + Sbjct: 275 KNDTID---PEDMKRARPEKQIAFKFSLEEAVTVLKEIEWSES-GATYTPIALIEPVRLA 330 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G + A+L N + IK L ++++G RV+V + GE+IPK+ + N P+ Sbjct: 331 GTTVKRASLANPNIIKAL-----------NLKIGSRVVVTKRGEIIPKIEALAENP--PN 377 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + +P C +C S + + ++C R++ ++S +I Sbjct: 378 VKEIEYPDTCSVCGSPLTNEG---------TRLYCPNMSCPKLIHHRIEKWISV--LDIR 426 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G + F+ + D++TL ++ I G +S +Y +++ Sbjct: 427 DFGITLIKRLFE----MGRVNSITDLYTLTVE------ELAAIDRMGKLSAEKVYKALHS 476 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 ++ ISL FI I +G + L + + V Sbjct: 477 KKEISLTEFIAGFDIEGIGETMVEKLEEAGFNDLNELLGASEA----------DFANVYQ 526 Query: 604 VGDIIAQAIVEFYQNPRNICAVEA----LLKEVSPSIGRHEKNVSSE-IENKKLVFTGTL 658 G +++ +V N+ ++ L+ + I + ++ FTG L Sbjct: 527 FGQVLSHTLVT------NLSILKDEMTGLIDKGYIKIKPPLTSEEGAVLKGLSFCFTGEL 580 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLF 716 ++R +A+ V + G V + + + ++ D+ SK +KAQ+LG I+ EE FL Sbjct: 581 NTMKRAQAEALVKEKGGTVKSSVVKGLSYLVTNTPDSGSSKNKKAQELGTAIITEEAFLN 640 Query: 717 LLQQ 720 L+ + Sbjct: 641 LIGK 644 >gi|320533083|ref|ZP_08033816.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 171 str. F0337] gi|320134698|gb|EFW26913.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 171 str. F0337] Length = 825 Score = 294 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 156/503 (31%), Positives = 253/503 (50%), Gaps = 38/503 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQ--YSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 AR+ S L ++I D YY ++ + D++YDAL R + + A P LAR+ Sbjct: 33 PAAARERWSELVRDIEAARDAYYNAIDAESPLSDADYDALYRELEGLEAAHPLLARAG-- 90 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P +GG H SL+ ++++++++++ R+ D+ + T E Sbjct: 91 -SPTRSVGGRAITDFAPAPHHERMYSLQDVFSLDEVQEWAERMVAETGV-GDDELAMTAE 148 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 KIDG + + YE G AA RGDG +GEDV+ +R I ++P VL+ + P ++EVRGE Sbjct: 149 VKIDGLAVALTYEDGILTRAATRGDGTTGEDVTGNVRTIASVPLVLAGDAHPSLLEVRGE 208 Query: 191 VYISKNDFLALNDEMIAVGRKP----------YANPRNAASGILRRLNPT-DITRYLNFF 239 VY +F + N+E + +ANPRNAA+G LR+ NP +R L Sbjct: 209 VYFPTQEFESFNEERRTRNLQRQADGTPLLQVFANPRNAAAGSLRQKNPAVTASRPLAMI 268 Query: 240 VHGLGKTSEIF----AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295 HG+G + Q+E + + G PV+ +Y + R L Sbjct: 269 AHGVGAITPAPGEKLPTRQHEWYELLAGWGLPVSPYNTVVRGRAEREAYIERYATHRHDL 328 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 ++IDG+V+K+D+ SLQ++LG +R PRW ++K+ ++ TRLLDI +Q+GRTG +TP Sbjct: 329 IHEIDGIVFKLDDHSLQRRLGHTSRVPRWATAYKYPPEEVRTRLLDIAVQVGRTGRVTPF 388 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 +EPV + G+ + ATLHN + + +R+GD V+V++AG+VIP+++ Sbjct: 389 GMMEPVLVAGSTVARATLHNATEVAR-----------KGVRIGDMVIVRKAGDVIPEILG 437 Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475 + R + F P+ CP C + + RC +C AQ ER+ H Sbjct: 438 PVAELRDGSERDFVMPTHCPSCGTELA-----PAKDGDVDLRCPNTRSCPAQLTERIAHI 492 Query: 476 VSRDAFNIEGLGKQQLDFFFKSE 498 SR A ++EGLG + + + Sbjct: 493 GSRGALDVEGLGDEAAGALTRPD 515 Score = 188 bits (477), Expect = 3e-45, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 13/207 (6%) Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575 +Q + T + + + R L R + +L +RHVG AR+LA + Sbjct: 615 KQIYDADGRVKRATAPGKNATAMISQLRQARTRPLWRILVALSVRHVGPTAARALAARFR 674 Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635 S + Q D L V VG IA++ V + + + + + Sbjct: 675 SLEALCQA----------DVAELAEVDGVGPTIAESWVRWREVDWHREILSRWEAAGVRT 724 Query: 636 IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 +E +V TG+L++ R A+E + G S +S+KT ++VGD Sbjct: 725 REETSDQQEEPARTLEGLTIVVTGSLERFTRDSAKEAIVSRGGKASGSVSKKTSFVVVGD 784 Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GSK KA+ LG+ I++E+ F+ LL+ Sbjct: 785 KAGSKESKARDLGLTILDEDGFVALLE 811 >gi|326774207|ref|ZP_08233489.1| DNA ligase, NAD-dependent [Actinomyces viscosus C505] gi|326636346|gb|EGE37250.1| DNA ligase, NAD-dependent [Actinomyces viscosus C505] Length = 818 Score = 294 bits (751), Expect = 6e-77, Method: Composition-based stats. Identities = 159/514 (30%), Positives = 259/514 (50%), Gaps = 39/514 (7%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQ--YSKPIILDSEYDALKRRCDAIAH 60 +R + + A+ AR+ S L ++I D YY ++ + D++YD L R + + Sbjct: 23 QRGPVDLSAI-PTAARERWSELVRDIEAARDAYYNAIDAESPLSDADYDTLYRELEGLEA 81 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 A P LAR+ P +GG H SL+ ++++++++++ R+ Sbjct: 82 AHPLLARAG---SPTRSVGGRAVTDFAPAPHHERMYSLQDVFSLDEVQEWAERMVAETGV 138 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 D+ + T E KIDG + + YE G AA RGDG +GEDV+ +R I ++P VL+ + Sbjct: 139 -GDDELAMTAEVKIDGLAVALTYEDGILTRAATRGDGTTGEDVTGNVRTIASVPLVLAGD 197 Query: 181 -IPEIIEVRGEVYISKNDFLALNDEMIAVGRKP----------YANPRNAASGILRRLNP 229 P ++EVRGEVY DF A N+E + +ANPRNAA+G LR+ NP Sbjct: 198 AHPSLLEVRGEVYFPTQDFEAFNEERRTRNVQRQADGAPLLQVFANPRNAAAGSLRQKNP 257 Query: 230 T-DITRYLNFFVHGLGKTSEIF----AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSY 284 +R L HG+G + Q+E + + G PV+ +Y Sbjct: 258 AVTASRPLAMIAHGVGAITPAPGESLPTRQHEWYELLAGWGLPVSPYNAVVRGRVEREAY 317 Query: 285 YNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDI 344 + R L ++IDG+V+K+D+ SLQ++LG +R PRW ++K+ ++ TRLLDI + Sbjct: 318 IERYAAHRHDLIHEIDGIVFKLDDHSLQRRLGHTSRVPRWATAYKYPPEEVRTRLLDIAV 377 Query: 345 QIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVK 404 Q+GRTG +TP +EPV + G+ + ATLHN + + +R+GD V+V+ Sbjct: 378 QVGRTGRVTPFGMMEPVLVAGSTVARATLHNATEVAR-----------KGVRIGDMVIVR 426 Query: 405 RAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLAC 464 +AG+VIP+++ + + R + F P+ CP C + + RC +C Sbjct: 427 KAGDVIPEILGPVADLRDGSERDFVMPTHCPSCGTELA-----PAKDGDVDLRCPNTRSC 481 Query: 465 SAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 AQ ER+ H SR A ++EGLG + + + Sbjct: 482 PAQLTERIAHIGSRGALDVEGLGDEAAGALTRPD 515 Score = 184 bits (466), Expect = 6e-44, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 13/207 (6%) Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575 +Q + T + + + R+ L R + +L +RHVG AR+LA + Sbjct: 615 KQTYDADGRVKKATAPGKNATAMLSQLRQARSRPLWRILVALSVRHVGPTAARALAARFR 674 Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635 S + Q D L V VG IA++ + + + + + Sbjct: 675 SLEALCQA----------DVAELAEVDGVGPTIAESWARWREVDWHREILSRWEAAGVRT 724 Query: 636 IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + +E +V TG+L+ R A+E + G S +S+KT ++VGD Sbjct: 725 REEDSEEQEEPARTLEGLTVVVTGSLEGFTRDSAKEAIVSRGGKASGSVSKKTSFVVVGD 784 Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GSK KA++LG+ I++EE F+ LL+ Sbjct: 785 KAGSKETKARELGLTILDEEGFVALLE 811 >gi|111226523|ref|XP_001134548.1| BRCT domain-containing protein [Dictyostelium discoideum AX4] gi|90970627|gb|EAS66865.1| BRCT domain-containing protein [Dictyostelium discoideum AX4] Length = 843 Score = 293 bits (750), Expect = 7e-77, Method: Composition-based stats. Identities = 176/804 (21%), Positives = 332/804 (41%), Gaps = 148/804 (18%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L +I+ ++D YY SK I D EYD L +R + + F N++G ++ Sbjct: 71 LRNKINRYNDLYYNKSKSEISDFEYDKLFKRLEILEKKFNQQTI-------TNQVGAPIS 123 Query: 84 LSLF----KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS-------IFFTLEP 132 K H LSL+ ++ +D+ F +I +F KK + I ++LE Sbjct: 124 DYSNNRGLKFRHKSRMLSLQNTYSKDDIIAFKNKIEKFLLKKQTSQQQQPQQQIEYSLEL 183 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K DG I++ YE K RG+G GED++ + L + + Sbjct: 184 KYDGIGISLVYENNKLKRVLTRGNGEIGEDITTNALQFIPSLKNLLTLPSNLTVFILFLI 243 Query: 193 ISKNDFLALND--------------EMIAVGRKPYANPRNAASGILRRLNPTDI------ 232 + DF + ++ + Y N RN SGILR+ D Sbjct: 244 LKYKDFEIRGEVVLNKSYLKIINKLKLDNNDQHQYKNTRNIVSGILRKSIEEDANDSLNI 303 Query: 233 --------TRYLNFFVHGLGK----------------------------TSEIFAKGQYE 256 +FF + + Q + Sbjct: 304 EPILLLNEQMKFDFFPYFFIPTNNNNNNINNGENENENDNEKENDNEMIIDDERCNTQSK 363 Query: 257 MLQKMRCLGFPVNNGVRQA-----------NTFHGIVSYYNEMK-SIRSTLPYDIDGLVY 304 L+ +GF ++NG N I + E + R +DIDG+V Sbjct: 364 NLKLFEKMGFQIDNGSNTVVTLSTGGGGNNNDIKNIEEFIKEWELKKRENHNWDIDGIVI 423 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++ ++Q+ LG+ RSPRW ++KF K + + DI +Q+G++G +TPVA +EP+ + Sbjct: 424 KVNDINIQRILGDINRSPRWAFAYKFGAKSEISTIKDIVLQVGKSGRITPVALVEPIQVH 483 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G I+ ATL+N YI L +I++G +VL++RAG+VIPK++ + + + Sbjct: 484 GVTISRATLNNLSYINKL-----------NIKIGSKVLIERAGDVIPKIITNLDDNINNT 532 Query: 425 AQPFSFPS--------FCPICQSRVVRD--LNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 + + C + + + ++ C Q ++++ Sbjct: 533 NTNTNTNNTNNIESLFKCNENGNILCPCNLKSELVNRVGYVDYFCVAENCPNQLVQQISW 592 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 FV + A NI+G+GK Q+ +++ I D++ L + ++ K+ ++ GF Sbjct: 593 FVDKKAMNIQGVGKSQIQVLLENQ----LIEDFGDLYELYQFKE----KLLSLKGFSHTK 644 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 V NL +SI ++ L + ++GI +G+ ++ L++ + S N N+ Sbjct: 645 VNNLLESIEDSKSRGLASLLCAIGIPGIGSSNSKILSEKFQSLDNLI---------NSPS 695 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQ--NPRNICAVEALL--------------------KEV 632 S+ +G +++I F+ + ++ L+ + Sbjct: 696 IESIELQSGLGRQTSESIFNFFNPLDQFEKQYLDYLIFKFKSNNLKLTHNNNNDNNEEIG 755 Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT-QLGAVVSAILSRKTDIIIVG 691 + + + +N +S + NK +V TG + R ++++ + A V + ++ T I+++G Sbjct: 756 NNNNNNNNENNNSFLSNKYIVITGKFKLGDRDFVKDFIQRKFNAKVQSSINSFTQILLIG 815 Query: 692 DNPG-SKLEKAQQLGVKIMNEEQF 714 + P +KL KA +LG++I +E + Sbjct: 816 EKPAIAKLNKANELGIQIKSENEL 839 >gi|332992914|gb|AEF02969.1| DNA ligase, NAD-dependent [Alteromonas sp. SN2] Length = 404 Score = 293 bits (750), Expect = 7e-77, Method: Composition-based stats. Identities = 129/349 (36%), Positives = 196/349 (56%), Gaps = 10/349 (2%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 ++EQA+ SL +I+ ++ YY P + D++YD + +I FP+L + + Sbjct: 4 TLEQAKARAESLRGQINEYNYQYYVLDAPTVPDAQYDRDMQELISIEKQFPEL---QSVS 60 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P K+GG + +VTH +P LSL+ ++ L F RIY KD+ + F+ EP Sbjct: 61 SPSQKVGGSALSAFEQVTHEVPMLSLDNAFDDVSLLAFEKRIYDRL--KDNKELGFSCEP 118 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEV 191 K+DG ++I YE G+ V AA RGDG GE+++ +R I +P L N P +EVRGEV Sbjct: 119 KLDGLAVSILYENGEMVRAATRGDGQVGENITTNVRTIANVPLKLRGENYPSRLEVRGEV 178 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 ++ K F ALND A K +ANPRNAA+G LR+L+ R L F+ + LG + Sbjct: 179 FMPKKGFEALNDYQRANDGKVFANPRNAAAGSLRQLDSKVTAKRPLMFYAYSLGVVTPED 238 Query: 251 A---KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 L ++ G P+ + A G ++YY + ++R LPYDIDG+V+KVD Sbjct: 239 FELPHHHSARLAQLGEWGIPLCPDIDTAEGGKGCLAYYQRILTLRDDLPYDIDGVVFKVD 298 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 + S+Q+ LG AR+PRW I+ KF ++ T+LLD++ Q+GRTG + Sbjct: 299 DISVQQTLGFVARAPRWAIAQKFPAQEEITKLLDVEFQVGRTGAMGVTM 347 >gi|281358582|ref|ZP_06245061.1| DNA ligase (NAD(+)) [Victivallis vadensis ATCC BAA-548] gi|281314930|gb|EFA98964.1| DNA ligase (NAD(+)) [Victivallis vadensis ATCC BAA-548] Length = 626 Score = 293 bits (750), Expect = 7e-77, Method: Composition-based stats. Identities = 171/735 (23%), Positives = 289/735 (39%), Gaps = 120/735 (16%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + I E L ++ L + I YH+ Y+ +P I D+ YD L R + Sbjct: 1 MDTKNFIA-EKLDRDE-------LIRLIEYHNRRYWDEGEPEIPDARYDELIRALQKLEP 52 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 +L ++ KV H P LSL+K +++E++ ++ + R Sbjct: 53 DH-ELVT---------RVYAPAVAGSGKVRHLRPMLSLDKAYSLEEVLEWAKKFAR---- 98 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 +EPK DG G+ + RGDG GE+++ + + + Sbjct: 99 --SEDEELLVEPKYDGISANF---DGRVLS--TRGDGELGENITDKLPLVELETAGHTGK 151 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV 240 + VRGE+ I +DF L + G Y N RNA +GI+ + Sbjct: 152 VDRP--VRGELVIRDDDFKTLYSHIRKKGGGVYKNSRNAVAGIMGLKEIAE--------- 200 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 M + + N V + + + + E++ LPY D Sbjct: 201 ----------------MELQGAKITLVDYNLVSFRVKYSELAAKWEELRRQLEALPYPQD 244 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V K+ + + LG A PR I+ KF + TRL+ ++ G+ LTPVA LEP Sbjct: 245 GIVIKLADSAYSASLGNTAHHPRGEIAFKFTNIRRETRLIGVEWSFGK-NCLTPVAELEP 303 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V I G I ATLHN I L +++GD V V+RAG+VIP +V Sbjct: 304 VEISGTTIRRATLHNIQNILEL-----------GVQIGDTVTVERAGDVIPYIVSST--- 349 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 + + CP C +++VR C C QL+RL + Sbjct: 350 -PGEERRSPLIEDCPSCGAKLVRRGPE---------LCCPNPECPETQLQRL--AAAVRN 397 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 IE LG+ L ++ +R D+F L + + GF S NL + Sbjct: 398 LGIERLGEPTLRKLMENSG----VRHLGDLFELTAMD------LLRLDGFAAKSAANLIE 447 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 I K R ++ + + +L I ++GA +A+ + + + L Sbjct: 448 EIQKARIVNDYQLLAALNIPNIGANVAKVIFSH-----------TDFAGLRRMSEEELSA 496 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQ 659 +P +G A+A+V ++ LL V + + FTG + Sbjct: 497 IPGIGPERAKALVSELAAQS--EYLDELLGAVRLIHAAAPAAEIP------TVCFTGKMP 548 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIV---GDNPGSKLEKAQQLGVKIMNEEQFLF 716 + +R ++ T G + ++ +++ +N G KL+KA +LGVK+++ ++FL Sbjct: 549 E-KRSYYEKLATAHGYRSADDVTSSLSLLVAADPAENSG-KLKKAARLGVKVVSLDEFLS 606 Query: 717 LLQQYNTTLRIHDDD 731 +L + I + D Sbjct: 607 MLS--PASAPIAEAD 619 >gi|153217072|ref|ZP_01950836.1| DNA ligase [Vibrio cholerae 1587] gi|124113902|gb|EAY32722.1| DNA ligase [Vibrio cholerae 1587] Length = 330 Score = 293 bits (750), Expect = 7e-77, Method: Composition-based stats. Identities = 110/335 (32%), Positives = 175/335 (52%), Gaps = 8/335 (2%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + L+ L + + H YY P I D+EYD L R + A P+L + Sbjct: 1 MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELM---SSDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + V H IP LSL+ ++ +L F R+ + F EPK Sbjct: 58 PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHS--TFCCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192 +DG +++ YE G AA RGDG +GE+++ +R I +IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIF 250 + K F ALN + G K + NPRNAA+G LR+L+ R L F+ + +G Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A Y+ +++ G P+ + + + ++Y ++ R +L Y+IDG+V KVD+ Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDIFQRRQSLAYEIDGVVIKVDDIQ 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQ 345 LQ++LG AR+PRW I++KF ++ T L D++ Q Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQ 330 >gi|257793742|ref|ZP_05642721.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9781] gi|257787714|gb|EEV26054.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9781] Length = 425 Score = 293 bits (750), Expect = 8e-77, Method: Composition-based stats. Identities = 161/463 (34%), Positives = 248/463 (53%), Gaps = 42/463 (9%) Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 GF N + N G++ Y + S R +LPYDIDG+V KV++ Q ++G +SPRW Sbjct: 1 GFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFTQKSPRW 60 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384 I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+LHNED I Sbjct: 61 AIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDLIH---- 116 Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444 RDIR+GD V+VK+AG++IP+VV I R DA + P+ CP C +VR Sbjct: 117 -------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCGHELVRI 169 Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504 A RC C AQ +E L HFVSR A NI+GLG + + ++SE I Sbjct: 170 EGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE----LI 218 Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564 + ADIF L + G V NL +I + ++ SLE +F LGIRH+G Sbjct: 219 KDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLENLLFGLGIRHLGV 272 Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 + ++ LA+ Y + L+ + +GD +AQ++V + +N Sbjct: 273 KASQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSVVTYLENEDIRAL 322 Query: 625 VEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680 ++ L + I + K E K +V TG L ++ R++A +++ GA V++ Sbjct: 323 IQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQGAKVTSS 382 Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 +++ TD++I G++ GSKL KAQ LG++I E+QF+ + N+ Sbjct: 383 VTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 425 >gi|145218922|ref|YP_001129631.1| DNA ligase, NAD-dependent [Prosthecochloris vibrioformis DSM 265] gi|145205086|gb|ABP36129.1| DNA ligase, NAD-dependent [Chlorobium phaeovibrioides DSM 265] Length = 488 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 165/527 (31%), Positives = 264/527 (50%), Gaps = 40/527 (7%) Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + K DF ALND +ANPRNA +G L+ + ++ +FV + Sbjct: 1 MRKEDFTALNDTRPE--EDRFANPRNATAGTLKLQDSAEVAVRRLWFVAYYLDGIQDPDT 58 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 + LQ + GF R I ++ R LPY+ DG+V K+++ Sbjct: 59 PHFHRLQLLETAGFFTGGHYRLCKGMQEIAAFIARWNEERWHLPYETDGVVLKLNDVRQW 118 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 K LG ++SPRW I++K+ +QA+T L D+ Q+GR G +TPVA LEPV + G+ ++ +T Sbjct: 119 KTLGATSKSPRWAIAYKYPAQQATTVLRDVVFQVGRLGTITPVAELEPVRLAGSTVSRST 178 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D ++ L I +GDRV+++++GEVIPKV+ ++ R DA+ PS Sbjct: 179 LHNFDEMRRL-----------GIMIGDRVVIEKSGEVIPKVIRVVTEARPVDARLVELPS 227 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + +VR+ C C AQ R+ HF SR+A +I+ LG+ ++ Sbjct: 228 RCPACSTPIVREEGE------VGFYCPNEAGCPAQLKGRILHFASRNAMDIQNLGEALVE 281 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + P D++ LQ Q N+ G S N+ ++++ R+ S R Sbjct: 282 QLV----AFGLVHDPGDLYFLQEPQL------RNLERMGPKSAQNVVRALDESRSQSYAR 331 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F+LGIRHVG AR LA+ + S + +A V +G +IA++I Sbjct: 332 LLFALGIRHVGQATARELARAFPSIEALEAASEEELA----------DVADIGPVIARSI 381 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 E+++ P +E L P K ++S E +VFTG L + R A E V Sbjct: 382 REWFEAPAVSALLEKLRDARLPLAAEDPKPLINSNFEGLSVVFTGALLRHDRQSASELVL 441 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + G + + +S+KT +++ G GSKLEKA +LG+++++EE+F +L Sbjct: 442 ERGGKIVSTVSKKTGLVVAGREAGSKLEKALKLGLRVISEEEFEAML 488 >gi|329946006|ref|ZP_08293693.1| DNA ligase [Actinomyces sp. oral taxon 170 str. F0386] gi|328528454|gb|EGF55432.1| DNA ligase [Actinomyces sp. oral taxon 170 str. F0386] Length = 811 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 156/500 (31%), Positives = 253/500 (50%), Gaps = 38/500 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQ--YSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 AR+ L ++I D YY ++ + D++YD L R + + A P LAR+ P Sbjct: 27 ARERWGELVRDIEAARDAYYNAVDAESSLSDADYDVLYRELEDLEAAHPLLARAG---SP 83 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +GG H SL+ ++++++++++ R+ DD + T E KI Sbjct: 84 TRSVGGRAITDFTPAPHHERMYSLQDVFSLDEVQEWAERMMAETGVADD-DLAMTAEVKI 142 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193 DG + + YE G AA RGDG +GEDV+ +R I ++P VLS + P ++EVRGEVY Sbjct: 143 DGLAVALTYENGILTRAATRGDGTTGEDVTGNVRTIASVPLVLSGDAHPSLLEVRGEVYF 202 Query: 194 SKNDFLALNDEMIAVGRKP----------YANPRNAASGILRRLNPT-DITRYLNFFVHG 242 +F A N++ + +ANPRNAA+G LR+ NP +R L HG Sbjct: 203 PTQEFEAFNEDRRTRNVQRQADGAPLLQVFANPRNAAAGSLRQKNPAITASRPLAMIAHG 262 Query: 243 LGKTSEIF----AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G + Q+E + + G PV+ +Y + R L ++ Sbjct: 263 VGAITPAPGERLPARQHEWYELLAGWGLPVSPYNTVVRGRAEREAYIERYATHRHDLIHE 322 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+V+K+D+ SLQ++LG +R PRW ++K+ ++ TRLLDI +Q+GRTG +TP + Sbjct: 323 IDGIVFKLDDHSLQRRLGHTSRVPRWATAYKYPPEEVRTRLLDIAVQVGRTGRVTPFGMM 382 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV + G+ + ATLHN + + +R+GD V+V++AG+VIP+++ + Sbjct: 383 EPVLVAGSTVARATLHNATEVAR-----------KGVRIGDMVIVRKAGDVIPEILGPVA 431 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R + F+ P+ CP C + + RC +C AQ ER+ H SR Sbjct: 432 DLRDGTERDFAMPTHCPSCGTELA-----PAKDGDVDLRCPNTRSCPAQLTERIAHIGSR 486 Query: 479 DAFNIEGLGKQQLDFFFKSE 498 A ++EGLG + + + Sbjct: 487 GALDVEGLGDEAAGALTRPD 506 Score = 183 bits (463), Expect = 1e-43, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 13/207 (6%) Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575 +Q + + + R L R + +L +RHVG AR+LA + Sbjct: 606 KQTYDADGRVKKATVPGKNAIAMLSQLRDARTRPLWRILVALSVRHVGPTAARALAARFR 665 Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635 S + D L V VG IA++ V + + + + Sbjct: 666 SLETLCHA----------DVAELAEVDGVGSTIAESWVRWRDVDWHREILNRWEAAGVRT 715 Query: 636 IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 ++ +V TG+L+ R A+E + G S +SRKT +IVGD Sbjct: 716 REEASDQQEEPARTLDGLTVVVTGSLEGFTRDSAKEAIVSRGGKASGSVSRKTSFVIVGD 775 Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GSK KA++LG+ I++EE F+ LL+ Sbjct: 776 KAGSKEAKARELGLTILDEEGFVSLLE 802 >gi|256829851|ref|YP_003158579.1| DNA ligase (NAD(+)) [Desulfomicrobium baculatum DSM 4028] gi|256579027|gb|ACU90163.1| DNA ligase (NAD(+)) [Desulfomicrobium baculatum DSM 4028] Length = 615 Score = 290 bits (743), Expect = 5e-76, Method: Composition-based stats. Identities = 150/709 (21%), Positives = 284/709 (40%), Gaps = 117/709 (16%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E L + ++ ++D Y + P++ D++YD L R + P L +++ Sbjct: 10 EAHRLVERLAEYNDAY-RRGAPLVGDAQYDLLLARLRELDPDHPFL----------HRVE 58 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 E ++ H +P LS +K + E+L +F+ R+ + + + + + + PK+DG Sbjct: 59 PETFSGKREIRHPVPMLSTDKAYTSEELERFVARVEKEAGEIGVSEVRYRVTPKLDGLAG 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 + G F RG+G SG +VS+ + + GE+ I ++ F Sbjct: 119 R---DDGTFF--VTRGNGESGYEVSSAFAKG-------MIPLGGRGRGVGEMVILQSYFQ 166 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTD------ITRYLNFFVHGLGKTSEIFAKG 253 + + +PRN GI+ + + F + + E Sbjct: 167 EHLSDA-------FEHPRNLVVGIVSSDTVNELAKKALADEAVRFVPYAELPSWEGSGAE 219 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 + + + + + + + Y +DG+V +V + +++ Sbjct: 220 LLQRMDAL--------------------------TEELSAQVDYPLDGMVVEVVDEDVRR 253 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +G + RW I+ K + A T + + Q+GRTG +TPV +EPVN+ GA I T Sbjct: 254 TMGATSHHYRWQIAVKRKGETALTVVTGVVWQVGRTGKVTPVLMVEPVNVSGATIRRVTA 313 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN ++ + + G + + R+GEVIPKV ++V + P+ Sbjct: 314 HNAGLLEK-----------KGLGPGAEIEIIRSGEVIPKVEAVLVPAAT------TLPTA 356 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C + + R+ + C Q ++ ++H+ N + G++ ++ Sbjct: 357 CPSCGAALEREND---------FLLCRNEHCPDQVVQTIEHWFK-TLGNADWFGRKTVEK 406 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 +S + ++ L + + G +V +++ R + RF Sbjct: 407 MVRSGYDSL-----EKVYELGEDDFRAMGFGPVLSGNLAEAVY-----LSRTREVEDWRF 456 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + +LGI +G +R L + + + + V G I A +I Sbjct: 457 LAALGIEDLGKGDSRKLLEQFR-----------LQDLLTVSRERIEAVHGFGAITAASIA 505 Query: 614 EFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 R + LL P+ EK S + K +VFTG ++ R QE Sbjct: 506 RGL--ERVGPTLRHLLDLGFRIMPTGAAREKVTDSPLAGKHVVFTGKMRG-SREDMQEEA 562 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 GA+V + ++ KTD +I G+N G SKL KA+Q G I+ E+++L L+ Sbjct: 563 RAQGALVQSAVNSKTDFLICGENVGASKLAKARQFGTAILQEDEYLRLI 611 >gi|225013055|ref|ZP_03703470.1| DNA ligase, NAD-dependent [Flavobacteria bacterium MS024-2A] gi|225002783|gb|EEG40764.1| DNA ligase, NAD-dependent [Flavobacteria bacterium MS024-2A] Length = 487 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 164/519 (31%), Positives = 258/519 (49%), Gaps = 39/519 (7%) Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260 +N++ +G Y NPRN ASG L+ + + + + QY+ L K Sbjct: 1 MNEQRAILGEPLYRNPRNTASGSLKLQDSSIVAERPLTCFLYSLAGDNLPVTSQYDALIK 60 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 R GF V R N+ + + + R +LPY+IDG+V KV+ LQ++LG A+ Sbjct: 61 AREWGFKVPESARLVNSIDAVFEFITYWEEQRKSLPYEIDGIVIKVNSLFLQEELGFTAK 120 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 +PRW I++K+ +QASTRL + Q+GRTG +TPVA+LEPV I G + A+LHN D I+ Sbjct: 121 APRWAIAYKYKAEQASTRLNAVQYQVGRTGAITPVAQLEPVVISGTTVKRASLHNADQIE 180 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 L D+R+GD V V++ GE+IPK+ I + R F CP C S Sbjct: 181 KL-----------DMRIGDTVFVEKGGEIIPKITGIDNHNRGKHEDRVLFIENCPECNSP 229 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 + R A H C+ L+C QQ+ +++HF+ R A +IEGLG + + +K Sbjct: 230 LRRVQGE------AQHYCSNELSCPPQQIGKIQHFIGRKAMDIEGLGGETVGLLYKE--- 280 Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560 +R AD++ L++ Q I + SV NL + I K + + +F LGIR Sbjct: 281 -GLLRSIADLYQLKKEQV------LPIERMAEKSVANLLEGIEKSKEKPFSKVLFGLGIR 333 Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 +VG +A+ LA+ + S A L +GD IAQ++++++ + + Sbjct: 334 YVGETVAKQLAREFKSIDRLALAT----------LEELTNTEEIGDRIAQSVLDYFASTK 383 Query: 621 NICAVEALLKEVSPSIGRHEK-NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 N + AL + N + KK V +G + R + + +G V++ Sbjct: 384 NQSQISALKNFGLQMQALESEHNFHDDFVGKKFVVSGVFEAFSREVLKSEIENMGGKVAS 443 Query: 680 ILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717 +S KTD +I G+ G SK EKA + GV I++E+ +L L Sbjct: 444 SVSAKTDYLISGEGVGPSKKEKADKFGVTILDEKSYLAL 482 >gi|257069044|ref|YP_003155299.1| DNA ligase, NAD-dependent [Brachybacterium faecium DSM 4810] gi|256559862|gb|ACU85709.1| DNA ligase, NAD-dependent [Brachybacterium faecium DSM 4810] Length = 871 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 152/533 (28%), Positives = 253/533 (47%), Gaps = 68/533 (12%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E A++ +++L I YY++ P + D+EYD L++ A+ A P LA + P Sbjct: 19 ETAQQRIAALTARIEQARVDYYEHDAPTMADAEYDELEKELRALEEANPQLAA---EDSP 75 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +GG L + H+ SL+ ++++E+LR++ + + E KI Sbjct: 76 TRTVGGAAAAGLPTIDHAERMQSLDNVFSLEELREWCAHAAAELG----GEVRYLTELKI 131 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193 DG I +RYE G+ V AA RGDG +GEDV+ I IP+ LS + P ++EVRGEV++ Sbjct: 132 DGLAINLRYEHGELVTAATRGDGRTGEDVTVNALQIDGIPQRLSGSGHPALVEVRGEVFM 191 Query: 194 SKNDFLA------------------LNDEMIAVGRKPYANPR-----------------N 218 DF + GR+P+ R Sbjct: 192 PTADFERLNDLQVELRERAVAESRTRWESRQGSGRRPFDEQRESLAAARRFPTFANPRNT 251 Query: 219 AASGILRRLNPTD---------ITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVN 269 AA G+ ++L+ + L VHGLG + Q EM + + G P + Sbjct: 252 AAGGLRQQLDKKEGLEREAGEARLAALRLTVHGLGAWPDPPVGSQSEMYELLASWGLPTS 311 Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329 + ++ + +Y R L ++IDG+V KVD F+ Q+ LG +R+PRW I+ K Sbjct: 312 RYMDVVDSIDEVAAYVEHHGEHRHDLEHEIDGIVVKVDSFAQQRALGSTSRAPRWAIAVK 371 Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389 F ++ +T+LLDI +Q+GRTG +TP +EPV + G+ + ATLHN+ ++ Sbjct: 372 FPPEEVTTKLLDIQVQVGRTGRVTPFGVMEPVTVAGSTVEKATLHNQFDVER-------- 423 Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449 + + +GD +++++AG+VIP+++ + + R +PF P+ CP C + + + Sbjct: 424 ---KGVLIGDTIVLRKAGDVIPEILAPVESLRDGSERPFVMPAQCPACGTEIRPER---- 476 Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502 + RC C AQ R++H SR AF+IE LG++ + Sbjct: 477 -EGDKDWRCPNQRDCPAQVTGRVEHAGSRGAFDIESLGEESAIALTDPDKRRG 528 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 61/241 (25%), Positives = 103/241 (42%), Gaps = 10/241 (4%) Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 Q + + I+ R + + S L + K ++ Sbjct: 611 WQPERRNGEPTGDWRIQPAFWSRPQFRHYKRDEEWRQQKAPSVLKSTEVLISELEKAKSQ 670 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L R + +L IRHVG ARSLA Y S + L VG+II Sbjct: 671 PLWRVLVALSIRHVGPTAARSLATAYGSMDAIREA----------SVEQLSDTDGVGEII 720 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A+A+VE++ + V+ + E+ + +E +V TG L+ R A+E Sbjct: 721 AEAVVEWFAVDWHRELVDGWARSGVRMADEVEEGFTKTLEGLTVVVTGGLEGFTRDGAKE 780 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIH 728 + G S +S+KTD ++VG+N GSK KA++LG++I++E F+ LL+ + + Sbjct: 781 AIITRGGKASGSVSKKTDFVVVGENAGSKETKARELGLRILDEAGFVALLEGGAEAVALE 840 Query: 729 D 729 + Sbjct: 841 E 841 >gi|325068288|ref|ZP_08126961.1| DNA ligase (NAD(+)) [Actinomyces oris K20] Length = 818 Score = 289 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 157/514 (30%), Positives = 260/514 (50%), Gaps = 39/514 (7%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQ--YSKPIILDSEYDALKRRCDAIAH 60 +R + + A+ AR+ S L ++I D YY ++ + D++YD L R + + Sbjct: 23 QRGPVDLSAI-PSAARERWSELVRDIEAARDAYYNAIDAESPLSDADYDLLYRELEGLEA 81 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 A+P LAR+ P +GG H SL+ ++++++++++ R+ Sbjct: 82 AYPLLARAG---SPTRSVGGRAVTDFAPAPHHERMYSLQDVFSLDEVQEWAERMVAETGV 138 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 D+ + T E KIDG + + YE G AA RGDG +GEDV+ +R I ++P VL+ + Sbjct: 139 -GDDELAMTAEVKIDGLAVALTYEDGILTRAATRGDGTTGEDVTGNVRTIASVPLVLAGD 197 Query: 181 -IPEIIEVRGEVYISKNDFLALNDEMIAVGRKP----------YANPRNAASGILRRLNP 229 P ++EVRGEVY +F A N+E + + +ANPRNAA+G LR+ NP Sbjct: 198 AHPSLLEVRGEVYFPTQEFEAFNEERRTLNLQRQADGAPLLQVFANPRNAAAGSLRQKNP 257 Query: 230 T-DITRYLNFFVHGLGKTSEIF----AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSY 284 +R L HG+G + Q+E + + G V+ +Y Sbjct: 258 AVTASRPLAMIAHGVGAITPAPGERLPTRQHEWYELLAGWGLAVSPYNAVVRGRAEREAY 317 Query: 285 YNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDI 344 + R L ++IDG+V+K+D+ SLQ++LG +R PRW ++K+ ++ TRLLDI + Sbjct: 318 IERYATHRHDLIHEIDGIVFKLDDHSLQRRLGHTSRVPRWATAYKYPPEEVRTRLLDIAV 377 Query: 345 QIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVK 404 Q+GRTG +TP +EPV + G+ + ATLHN + + +R+GD V+V+ Sbjct: 378 QVGRTGRVTPFGMMEPVLVAGSTVARATLHNATEVAR-----------KGVRIGDMVIVR 426 Query: 405 RAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLAC 464 +AG+VIP+++ + + R + F P+ CP C + + RC +C Sbjct: 427 KAGDVIPEILGPVADLRDGSERDFVMPTHCPSCGTELA-----PAKAGDVDLRCPNTRSC 481 Query: 465 SAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 AQ ER+ H SR A ++EGLG + + + Sbjct: 482 PAQLTERIAHIGSRGALDVEGLGDEAAGALTRPD 515 Score = 186 bits (473), Expect = 8e-45, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 13/207 (6%) Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575 +Q + T + + + R+ L R + +L +RHVG AR+LA + Sbjct: 615 KQTYDADGRVKKATVPGKNATAMLSQLRQARSRPLWRILVALSVRHVGPTAARALAARFR 674 Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635 S + Q D L V VG IA++ V + + + + + Sbjct: 675 SLEALCQA----------DVAELAEVDGVGPTIAESWVRWREVDWHREILSRWEAAGVRT 724 Query: 636 IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + +E +V TG+L+ R A+E + G S +S+KT ++VGD Sbjct: 725 WEEDSEEQEEPARTLEGLTVVVTGSLEGFTRDSAKEAIVSRGGKASGSVSKKTSFVVVGD 784 Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GSK KA++LG+ I++EE F+ LL+ Sbjct: 785 KAGSKETKARELGLTILDEEGFVALLE 811 >gi|56966057|pdb|1TA8|A Chain A, Structural Rearrangement Accompanying Nad+ Synthesis Within A Bacterial Dna Ligase Crystal Length = 332 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 117/329 (35%), Positives = 183/329 (55%), Gaps = 10/329 (3%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L++ A L ++++ + YY +P + D YD L + I FPDL P Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ K H IP SL ++ ED+ F R+ + K + + E Sbjct: 63 DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++RYE G FV A RGDG GE+++ +R + ++P L+ I +EVRGE Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ R LN F++ + + Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+EF+ Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRL 339 LQ +LG ++PRW I++KF ++A T + Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVV 325 >gi|269219963|ref|ZP_06163817.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 848 str. F0332] gi|269210599|gb|EEZ76939.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 848 str. F0332] Length = 799 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 149/490 (30%), Positives = 246/490 (50%), Gaps = 34/490 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 AR+ + + +S Y+ +PI+ D YD L R + P+LA + P Sbjct: 13 DARERWNEIAPLVSSAQRAYHSGDEPIVTDEHYDRLVRELRRLEAEHPELAVD---SSPA 69 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +G V H SL+ ++ ++DL+++ + T E KID Sbjct: 70 QSVGAPAAAGFENVAHLERLYSLQDVFTLDDLKEWYE--------GTAGAARCTAEVKID 121 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + +RY G+ V A RGDG +GEDV+A +R I ++P+ L + P+++E+RGEV+I Sbjct: 122 GLAVNLRYVGGELVVGATRGDGVTGEDVTANVRTISSVPQSLRGDFPDVVEIRGEVFIPL 181 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS------E 248 F + N A G K +ANPRNAA+G LR+ +P +F HG G+ + Sbjct: 182 AKFDSFNARQRAAGLKEFANPRNAAAGSLRQKDPKVAAERPLDFIAHGAGRIDGTSSAVD 241 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q + + + G PV+ VR +++ + + E +RS L + IDG V+K+D Sbjct: 242 EKLASQKGLYELFQEWGVPVSPYVRLVSSWDDVEGFVREYADLRSDLIHGIDGAVFKIDS 301 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q+ LG +R PRW +++K+ ++ TRLLDI +Q+GRTG +TP A ++PV + G+ + Sbjct: 302 RAEQEDLGATSRVPRWAVAYKYPPEEVETRLLDIKVQVGRTGRVTPFAVMKPVTVAGSTV 361 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATLHN + + + +GD V+V++AG+VIP+V+ + R + + Sbjct: 362 AQATLHNPSEVAR-----------KGVLIGDVVVVRKAGDVIPEVLGPVSALRDGSEREW 410 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 + PS CP C + + RC +C AQ ER+ + SR A ++E LG+ Sbjct: 411 TMPSACPSCGTELA-----PAKDGDVDIRCPNARSCPAQLAERVAYIGSRAALDVEALGE 465 Query: 489 QQLDFFFKSE 498 + + E Sbjct: 466 ETSLWLTDPE 475 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 55/233 (23%), Positives = 91/233 (39%), Gaps = 12/233 (5%) Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + K E R+ A + R+ + + + R Sbjct: 565 WIWQEVRVKGEPTGDFRRVRAAWTKPKWRRPQGKPAELASPSKPGKMIELVVAELQAART 624 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 L R I +L IRHVG A+++A + S A + ++ VG + Sbjct: 625 KELWRKIVALSIRHVGPTAAKAIASSFGSL----------SAAREASVEEMAQIDGVGRV 674 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHK 665 IAQ+ ++++ P + VEA + ++ +V TG L R Sbjct: 675 IAQSFLDWFDVPWHTEIVEAWEAAGVVFADEAAERQELPQTLKGMTVVATGALAGYTRDS 734 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +E + G + +S+KT ++VG NPGSK KA+ LGV ++E QF LL Sbjct: 735 VKEAIEARGGKAAGSVSKKTAAVVVGANPGSKAAKAEALGVPTLDEGQFEELL 787 >gi|295698750|ref|YP_003603405.1| DNA ligase, NAD-dependent [Candidatus Riesia pediculicola USDA] gi|291157368|gb|ADD79813.1| DNA ligase, NAD-dependent [Candidatus Riesia pediculicola USDA] Length = 593 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 190/634 (29%), Positives = 322/634 (50%), Gaps = 51/634 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + + LSSL ++I H Y+ K I D EYD + R+ D I + ++ E+ Sbjct: 1 MKKKNIHQYLSSLRKKIKKHQYLYHILGKSEIPDFEYDLMIRKLDRIEKEISEKSKKEEE 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 I ++ K+ H P LSL ++N + KF I + ++ I+F E Sbjct: 61 T-----ILSDLRRRSKKIKHYSPMLSLNNVFNQHEYLKFYKNILKIINNQE-ERIYFCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVR 188 KIDG + + Y+ G+F A+ RG+G +GED+S+ I+ I IP R +PE+IE+R Sbjct: 115 LKIDGLAVNLVYKNGEFHSASTRGNGETGEDISSKIQYIRDIPLSIRNRKGYVPELIEIR 174 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLG--- 244 GE+++ F N + +K ++NPR+AA G++++++ +I R LNFF +G G Sbjct: 175 GEIFMKFKKFQEFNSMLKKEKKKTFSNPRSAAIGLVKKVSQKEIIRESLNFFSYGCGLIK 234 Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 + K Q+E L+ ++ P+ + + I+ YY + ++R L Y IDG+V Sbjct: 235 LNNTFESPKNQFECLKMLKTWNVPIVENTKMYSCSKKILEYYKNIYNMRDQLDYGIDGIV 294 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV+ F QK +G + +P+W ++ KF K+ T LLD+ Q+GRTG++TP+A+++ ++ Sbjct: 295 IKVNSFIYQKIIGHTSYAPKWSVAFKFPAKKKITTLLDVIFQVGRTGVITPIAKIDTISF 354 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G I +LHN ++IK L I +GD+V+V AG++IPK+ I + Sbjct: 355 NGIQINRVSLHNTNFIKDL-----------GIMIGDKVIVSIAGDIIPKITGKIFDSTSN 403 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 FP +CP C S + K RCTGGL+C +Q+ + HFVS+ A NI Sbjct: 404 HINEIVFPKYCPSCFSITQIEKKGK-------IRCTGGLSCLSQRESLINHFVSKKAINI 456 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 G+GK + + I P+D+++L + ++ G + + +SI Sbjct: 457 IGIGKMTVKKMVQKN----LISDPSDLYSL------KFNDLLSLNGITQATSKKILNSIE 506 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP- 602 K +NI+LERF++SLGI VG +++ +A SYQ F + ++ + ++P Sbjct: 507 KSKNITLERFLYSLGIPGVGYVLSKKIASNSESYQFFLR-------ISSGEKYLPCKIPF 559 Query: 603 -LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635 +G I + I+ F++ N L K + Sbjct: 560 KGIGKNITENIISFFKKDHNRRMFSKLRKIFNIK 593 >gi|56966058|pdb|1TAE|A Chain A, Structural Rearrangement Accompanying Nad+ Synthesis Within A Bacterial Dna Ligase Crystal gi|56966059|pdb|1TAE|B Chain B, Structural Rearrangement Accompanying Nad+ Synthesis Within A Bacterial Dna Ligase Crystal gi|56966060|pdb|1TAE|C Chain C, Structural Rearrangement Accompanying Nad+ Synthesis Within A Bacterial Dna Ligase Crystal gi|56966061|pdb|1TAE|D Chain D, Structural Rearrangement Accompanying Nad+ Synthesis Within A Bacterial Dna Ligase Crystal gi|212374930|pdb|3BA8|A Chain A, Structural Basis For The Inhibition Of Bacterial Nad+ Dependent Dna Ligase gi|212374931|pdb|3BA9|A Chain A, Structural Basis For Inhbition Of Nad-Dependent Ligase gi|212374932|pdb|3BAA|A Chain A, Structural Basis For The Inhibition Of Bacterial Nad+ Dependent Dna Ligase gi|212374933|pdb|3BAB|A Chain A, Structural Basis For The Inhibition Of Bacterial Nad+ Dependent Dna Ligase Length = 332 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 118/330 (35%), Positives = 183/330 (55%), Gaps = 10/330 (3%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L++ A L ++++ + YY +P + D YD L + I FPDL P Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ K H IP SL ++ ED+ F R+ + K + + E Sbjct: 63 DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++RYE G FV A RGDG GE+++ +R + ++P L+ I +EVRGE Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ R LN F++ + + Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+EF+ Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLL 340 LQ +LG ++PRW I++KF ++A T L Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVLE 326 >gi|4235380|gb|AAD13193.1| NAD-dependent DNA ligase [Thermus sp. Vil3] Length = 505 Score = 286 bits (731), Expect = 9e-75, Method: Composition-based stats. Identities = 183/547 (33%), Positives = 289/547 (52%), Gaps = 46/547 (8%) Query: 70 DPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ P ++G + + + H SL+ + +E++R F RI R +K + Sbjct: 2 SPDSPTEQVGAKPLEATFRPIRHPTRMYSLDNAFTLEEVRTFEERIERALGRK--GPFVY 59 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T+E K+DG + + YE+G V+ A RGDG +GE+V+ + IPTIPR L PE +EVR Sbjct: 60 TVEHKVDGLSVNLYYEEGILVWGATRGDGETGEEVTQNLLTIPTIPRRLKGV-PERLEVR 118 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVY+ FL LN+E+ G K + NPRNAA+G R+ +P R L + LG Sbjct: 119 GEVYMPIEAFLRLNEELEEKGEKIFKNPRNAAAGSFRQKDPRITARRGLRATFYALGLGL 178 Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 E K Q ++L +R GFPV +G +A G+ Y R +LP++ DG+V K+ Sbjct: 179 EESGLKTQLDLLHWLREKGFPVEHGFARAEGAEGVERIYQGWLKERRSLPFEADGVVVKL 238 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 DE SL ++LG AR+PR+ I++KF ++ T L + +Q+GRTG +TPV LEPV I G+ Sbjct: 239 DELSLWRELGYTARAPRFAIAYKFPAEEKETALFQVVLQVGRTGQVTPVGILEPVFIEGS 298 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ TLHNE YI+ L D+R+G+ VLV AG VIP+V+ ++ +R + + Sbjct: 299 EVSRVTLHNESYIEDL-----------DVRIGEWVLVHNAGGVIPEVLRVLKEKRTGEER 347 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P +P CP C R+V++ HRC L C A++ E ++H+ SR A +I GL Sbjct: 348 PIRWPETCPECGHRLVKE--------GKVHRCPNPL-CPAKRFEAIRHYASRKAMDIGGL 398 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++ ++ + ++ AD++ L+ + G S NL I K + Sbjct: 399 GEKLIEKLLEK----GLVKDVADLYRLKEEDLVG------LERMGKKSAQNLLRQIEKSK 448 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 LER +++LG+ VG +AR+LA ++ + + + +V VG+ Sbjct: 449 ARGLERLLYALGLPGVGEVLARNLAAHFGTMDRLLEASLEELL----------QVEEVGE 498 Query: 607 IIAQAIV 613 + A+ I Sbjct: 499 LTARGIY 505 >gi|145627934|ref|ZP_01783735.1| DNA ligase [Haemophilus influenzae 22.1-21] gi|144979709|gb|EDJ89368.1| DNA ligase [Haemophilus influenzae 22.1-21] Length = 346 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 137/381 (35%), Positives = 216/381 (56%), Gaps = 38/381 (9%) Query: 339 LLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVG 398 + D++ Q+GRTG +TPVA+LEPV + G ++NATLHN D I+ L +I +G Sbjct: 1 MNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIERL-----------NIAIG 49 Query: 399 DRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458 D V+++RAG+VIP+++ ++ R +A+P FP+ CP+C S+++R A RC Sbjct: 50 DTVVIRRAGDVIPQIIGVLHERRPDNAKPIIFPTNCPVCDSQIIRIEGE------AVARC 103 Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518 TGGL C+AQ+ E LKHFVSR A +I+G+G + ++ E I PAD+F L Sbjct: 104 TGGLFCAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRE----LIHTPADLFKL----- 154 Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578 T + + G S N +S+ ++ +L RFIF+LGIR VG A +LA ++ + Sbjct: 155 -DLTTLTRLERMGAKSAENALNSLENAKSTTLARFIFALGIREVGEATALNLANHFKTLD 213 Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIG 637 + L +VP VG+++A I F++ N+ VE L+ + Sbjct: 214 ALKDA----------NLEELQQVPDVGEVVANRIFIFWREAHNVAVVEDLIAQGVHWETV 263 Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697 ++ + ++K +V TGTL ++ R++A+ + QLGA VS +S KTD +I GD GSK Sbjct: 264 EVKEASENLFKDKTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSK 323 Query: 698 LEKAQQLGVKIMNEEQFLFLL 718 L KAQ+L + ++ EE+FL + Sbjct: 324 LAKAQELNITVLTEEEFLAQI 344 >gi|6573451|pdb|1B04|A Chain A, Structure Of The Adenylation Domain Of An Nad+ Dependent Ligase gi|6573452|pdb|1B04|B Chain B, Structure Of The Adenylation Domain Of An Nad+ Dependent Ligase Length = 318 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 115/327 (35%), Positives = 180/327 (55%), Gaps = 11/327 (3%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + +QA + + L + ++ + YY +P + D+EYD L + AI +P+L S Sbjct: 1 MDRQQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTS--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +IGG + KV H +P +SL + DLR F R+ ++ + E Sbjct: 58 DSPTQRIGGPPLEAFRKVAHRVPMMSLANAFGEGDLRDFDRRVR-----QEVGEAAYVCE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 IDG +++RYE G FV A RGDG +GED++ ++ I ++P L + +E RGE Sbjct: 113 LAIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLKEPVS--LEARGEA 170 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250 ++ K FL LN+E A G + +ANPRNAA+G LR+L+P +R L+ FV+GL + Sbjct: 171 FMPKASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADAEALG 230 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L ++ LGF VN R+ ++++ +E R LPY+IDG+V KVD F+ Sbjct: 231 IASHSEALDYLQALGFKVNPERRRCANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDSFA 290 Query: 311 LQKQLGERARSPRWMISHKFAEKQAST 337 Q+ LG A+SPRW I++KF ++ T Sbjct: 291 QQRALGATAKSPRWAIAYKFPAEEVVT 317 >gi|217032016|ref|ZP_03437517.1| hypothetical protein HPB128_187g43 [Helicobacter pylori B128] gi|216946326|gb|EEC24932.1| hypothetical protein HPB128_187g43 [Helicobacter pylori B128] Length = 458 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 156/484 (32%), Positives = 237/484 (48%), Gaps = 32/484 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE ++ YY PI+ D+ YD L + A P+ ++ N P Sbjct: 3 KSQKEYLERIAYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G S K +H + SL+ ++N +L+ ++ RI K S F PK+D Sbjct: 60 QKVGAITTNSFNKNSHLMRMWSLDDVFNQSELQAWLQRI-----LKAYPSASFVCSPKLD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y+ GK V A RG+G GE V+ + I IP + IE+RGEV ISK Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVTNNAKHIANIPH--FIAYDGEIEIRGEVIISK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +ANPRNAASG LR+L+ R L F G+GK + Sbjct: 173 KDFDALNQERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + LGF + I Y+ + R +DG+V VDE +QK+ Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEDNYHTLIREREGFFALLDGMVIVVDELDIQKE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SP++ ++KF + T+++ + Q+GR+G +TPVA LEP+ I GA+I ATLH Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPIEIAGAMINRATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ ++I + DRV+V R+G+VIPK++ + + R P C Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC ++ + L C A+ E L HF S+DA NI+GLG + ++ Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451 Query: 495 FKSE 498 F+ + Sbjct: 452 FEEK 455 >gi|323226774|gb|EGA10965.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 338 Score = 283 bits (725), Expect = 6e-74, Method: Composition-based stats. Identities = 130/373 (34%), Positives = 206/373 (55%), Gaps = 40/373 (10%) Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408 TG +TPVARLEPV + G L++NATLHN D I+ L +R+GD+V+++RAG+ Sbjct: 1 TGAITPVARLEPVQVAGVLVSNATLHNADEIERL-----------GLRIGDKVVIRRAGD 49 Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 VIP+VV+++++ER + +P FP+ CP+C S V R A RCTGGL C AQ+ Sbjct: 50 VIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGE------AVTRCTGGLICGAQR 103 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 E LKHFVSR A +++G+G + +D + E + PAD+F L K+ + Sbjct: 104 KESLKHFVSRRAMDVDGMGDKIIDQLVERE----YVHTPADLFRLTA------GKLTGLD 153 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 G S N+ +++ K + + RF+++LGIR VG A LA Y+ + + Sbjct: 154 RMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAAT---- 209 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSS 645 L +VP VG ++A + F+ N + LL E + + + + S Sbjct: 210 ------IDELQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDS 263 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 K +V TG+L ++ R A+ + +GA V+ +S+KTD++I G+ GSKL KAQ+LG Sbjct: 264 PFAGKTVVLTGSLSQMSRDDAKARLVAVGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELG 323 Query: 706 VKIMNEEQFLFLL 718 + +++E + + LL Sbjct: 324 ITVIDEAEMIRLL 336 >gi|218460243|ref|ZP_03500334.1| NAD-dependent DNA ligase LigA [Rhizobium etli Kim 5] Length = 327 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 136/314 (43%), Positives = 202/314 (64%), Gaps = 4/314 (1%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 + ++ L+IE+A EL L +EI++HD Y+ +P I D++YDALKRR DA+ F Sbjct: 2 STEGSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEARF 61 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P+L R + P +G +++ VTH+ P LSL+ ++ ED++ F+ +YRF + Sbjct: 62 PELIRE---DSPSRHVGAAPSVTFSPVTHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLP 118 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 D SI FT EPKIDG ++IRYE G+ V AA RGDG +GE+V+A IR I IP L +P Sbjct: 119 DQSIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVP 178 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 ++E+RGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF + Sbjct: 179 AVVEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAY 238 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G+ SE+ Q+ M+Q + GFPVN +++ N+ I+++Y+E+ R L YDIDG Sbjct: 239 AWGEMSEMPEDTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDG 298 Query: 302 LVYKVDEFSLQKQL 315 +VYKVD LQ++ Sbjct: 299 VVYKVDSLELQRRP 312 >gi|218777900|ref|YP_002429218.1| DNA ligase (NAD(+)) [Desulfatibacillum alkenivorans AK-01] gi|254781309|sp|B8FKD5|DNLJ_DESAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218759284|gb|ACL01750.1| DNA ligase (NAD(+)) [Desulfatibacillum alkenivorans AK-01] Length = 631 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 151/715 (21%), Positives = 279/715 (39%), Gaps = 113/715 (15%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L Q + +++ Y + KP+I D+ YD L R IA L+ + E Sbjct: 17 LGQWLEKYNEAY-RAGKPMISDAHYDLLVERLREIAPDHGFLSA----------VEAETF 65 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 +V H P LS EK ++ + L +F+ R+Y+ + + F + PK+DG Sbjct: 66 ADKREVRHPAPMLSTEKAYDKQSLERFVERVYKEAAQIGVTDVLFQVTPKLDGLAAR--- 122 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 + G+ A RG+G++G D++ IP+ E+ ++ F Sbjct: 123 DDGQI--LATRGNGYAGYDIT-NALEKGVIPQGGRGLGLG------EIVAVQSYFQENLA 173 Query: 204 EMIAVGRKPYANPRNAASGILRRL------NPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 + + +PRN GI+ + ++F + Sbjct: 174 DR-------FEHPRNMVVGIISSDVLNISAKQALEDKQVHFVPYA--------------T 212 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L K G + + + Y +DG+V V ++ +G Sbjct: 213 LNKWEGSGKELLENSEKITQ------------DLIQATDYPMDGMVASVMNQDVRDHMGA 260 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 + RW I+ K + T + I Q+GRTG +TPV +EP+ + GA I T HN Sbjct: 261 TSHHYRWQIAIKAKGETGVTTVNAITWQVGRTGNVTPVLEVEPLKLSGATIRRVTAHNAG 320 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ + VG + V R+GEVIPK+ +++ + P CP+C Sbjct: 321 RIR-----------EKGAGVGASIEVIRSGEVIPKLENVLTP-----SDDTLIPENCPVC 364 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 ++ + + + L C A+ +R++H+ R N + G + ++ Sbjct: 365 ETPLEWNND---------FLKCPNLNCKARVEQRIRHWF-RILGNADWFGIKTVERLVAG 414 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + I+ + S G +++K R + RF+ + Sbjct: 415 GFDSL-----EKIYAMTEEDFLS-----LEFGPVQSKNLAEAINLSKSRPVEDWRFLAAF 464 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI +G +R + ++ + + ++ + GD+ + +I + + Sbjct: 465 GISDLGEGDSRKILSFFP-LEELLDKTR----------DDIVALHGFGDVTSISIEKGLK 513 Query: 618 N--PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 P ++ L + P+ + E +VSS I K +VFTG+++ R +E LGA Sbjct: 514 ALGPTIRHMLD-LGFNLQPTPLKSEMDVSSPISGKGVVFTGSMETGSRKDMEENARSLGA 572 Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729 V ++ KTD +I G G K +KAQ LGV ++ E+++L L++ + Sbjct: 573 NVQKAVTGKTDYLICGAKVGAKKTQKAQDLGVTVLTEQEYLQLVEGGESQSSPEQ 627 >gi|317455470|pdb|3PN1|A Chain A, Novel Bacterial Nad+-Dependent Dna Ligase Inhibitors With Broad Spectrum Potency And Antibacterial Efficacy In Vivo Length = 318 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 104/322 (32%), Positives = 175/322 (54%), Gaps = 7/322 (2%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S + Sbjct: 1 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ ++ + F+ RI + F EPK Sbjct: 58 PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I Y G+ AA RGDG +GED++A IR I +P ++L+ N P +EVRGEV+ Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250 + F LN + K +ANPRNAA+G LR+L+P ++ +G+G + Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ + Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296 Query: 311 LQKQLGERARSPRWMISHKFAE 332 LQ +LG +++PRW I++KF Sbjct: 297 LQNELGFISKAPRWAIAYKFPA 318 >gi|281414408|ref|ZP_06246150.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665] Length = 549 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 145/549 (26%), Positives = 229/549 (41%), Gaps = 93/549 (16%) Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGI-----VSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q+E + G PV+ R+ V+ E R L ++IDG+V K D Sbjct: 10 QHEAYDALASWGLPVSPYTRRVEGADEEALAAVVAVIEEYGRRRHELIHEIDGIVLKADA 69 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+ Q+ LG +R PRW ++K+ ++ T L DI + +GRTG +TP A LEPV + G+ + Sbjct: 70 FADQRYLGHTSRVPRWAAAYKYPPEEVHTLLRDIAVSVGRTGRVTPFAVLEPVTVAGSTV 129 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP----- 423 + ATLHN+D +K + + +GD V+V++AG+VIP+VV ++ R Sbjct: 130 SLATLHNQDVVK-----------AKGVLIGDTVVVRKAGDVIPEVVGPVLPLREKAIEAG 178 Query: 424 -DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 + + F P+ CP C + + + RC +C AQ R++H SR AF+ Sbjct: 179 RELREFVMPAHCPSCGTPLA-----PAKEGDVDLRCPNARSCPAQLAGRVEHLASRGAFD 233 Query: 483 IEGLGKQQLDFF-------------FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529 +E LG++ + + I A IF L + T G Sbjct: 234 VEALGEEAARWLVQGPGEDPAEHEGHVRPEGPGPITAEAQIFDLASGTPEAITGPRGEDG 293 Query: 530 -----------------------------------------------FGDVSVTNLYDSI 542 + L+D + Sbjct: 294 LTDLQRSLGAVRVWREGRTKVDGRMVPSGVFTLKPYFFTAGTAKRPSAPTANTLRLFDEL 353 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 K ++ L R + +L IRHVG ARSLA + S D L + Sbjct: 354 EKAKSQPLWRTLVALSIRHVGPTAARSLATAFGSMTALRAAAEA------GDRDRLAEID 407 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 VG IIA A++E++ + V+ +++ +E +V TG+L+ Sbjct: 408 GVGPIIADALIEWFAEDWHREIVDRWTAAGVAMEDEQDESTPRTLEGLTVVVTGSLEGFS 467 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 R A+E + G S +S+KTD ++ G+ GSKL+KAQ LGV ++ EQ LL Sbjct: 468 RDSAKEAILVRGGKASGSVSKKTDFLVAGEAAGSKLDKAQSLGVPVLEPEQVTALLAGGP 527 Query: 723 TTLRIHDDD 731 +R D D Sbjct: 528 DAVRPADTD 536 >gi|37788926|gb|AAO65604.1| hypothetical NAD-dependent DNA ligase [Candidatus Phytoplasma solani] Length = 495 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 175/533 (32%), Positives = 279/533 (52%), Gaps = 41/533 (7%) Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251 +S F LN + + P+ANPRNAASG LR+LN R L+ F++ + I Sbjct: 1 LSYPAFEKLNQKQKENNKTPFANPRNAASGTLRQLNSKIVAQRNLSIFIYNIASPYLIKP 60 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q L+ + LGF VN A TF ++ K I+ T PYD DG+V KV+E +L Sbjct: 61 T-QLASLEFLIQLGFTVNPHYNLALTFEDLLVKIQNYKVIKDTQPYDTDGVVIKVNELAL 119 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +G +++P+W I++KF K + + + DI Q+GRTG++TP+ ++ PV + G+LI+ Sbjct: 120 HALIGATSKAPKWAIAYKFPAKTSQSIVTDIIFQLGRTGMITPICQIMPVLVDGSLISKV 179 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 LHN D+I +DIR+GD V V +AG VIP++++++ ++R + + Sbjct: 180 VLHNYDFISK-----------KDIRIGDCVTVHKAGSVIPEILEVVASKRT-NQKKTMMI 227 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C+S +V K C Q+++RL HFVS+ A +I LG++ + Sbjct: 228 LQCPYCKSNLV-------KKEGKVDYFCLNDDCYWQKIQRLIHFVSKKAMDINVLGEKTI 280 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F I+ P+D++ L ++ + FG + N+ +I + + LE Sbjct: 281 ITLFNQ----HLIQKPSDLYLLHTHLNI----LQTLPSFGQKKINNILKAIEQSKTKPLE 332 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R +F LGI+HVG +I++ L K LS + A +L +P +GD IA++ Sbjct: 333 RVLFGLGIKHVGEKISQVLVKNNLSLEKLATI----------KLEALTAIPEIGDKIAKS 382 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEY 669 I F+ NPRNI ++ L + + V + +KK+V TGTLQ R + + Sbjct: 383 INIFFNNPRNIAEIQKLQQLGVSFQNTINQTVVKKTFFSDKKIVLTGTLQNYTRLELTQI 442 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + Q+GA +S+ LS KTD +I G N GSKL KAQ+L + I+ E Q ++Q + Sbjct: 443 LKQMGANISSSLSAKTDFLIAGTNAGSKLTKAQKLKISIIEEAQLEKWIKQTD 495 >gi|148989161|ref|ZP_01820551.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae SP6-BS73] gi|147925384|gb|EDK76462.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae SP6-BS73] Length = 374 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 117/361 (32%), Positives = 187/361 (51%), Gaps = 11/361 (3%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 ++ L ++ + YY P + DSEYD L R + A+P+ + + P +++GG Sbjct: 1 MNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRVGG 57 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 ++ K +H P SL+ ++ E+L F R+ + + E KIDG I+ Sbjct: 58 KVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLSIS 112 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + YEKG V RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 113 LTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASFDQ 170 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260 +N G +ANPRNAA+G LR+L+ + N + S Q + L+ Sbjct: 171 VNQVRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGLKY 229 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 + LGF VN A I ++ E+ R LPYDIDG+V KV++ + Q++LG + Sbjct: 230 LEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVK 289 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 +P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 290 APKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIA 349 Query: 381 G 381 Sbjct: 350 E 350 >gi|317470612|ref|ZP_07929998.1| DNA ligase [Anaerostipes sp. 3_2_56FAA] gi|316901903|gb|EFV23831.1| DNA ligase [Anaerostipes sp. 3_2_56FAA] Length = 559 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 145/570 (25%), Positives = 258/570 (45%), Gaps = 49/570 (8%) Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 G+G GE V+ + +P + + +RGE I +DF +N++M + Y Sbjct: 34 GNGEVGEVVTNNAKVFVNLP--KKIAYKGTLVIRGEAVIHYSDFRRMNEDMEDLD-SRYK 90 Query: 215 NPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ-YEMLQKMRCLGFPVNNGV 272 NPRN SG +R+LN R + F+ + ++ E R LGF + + V Sbjct: 91 NPRNLCSGSVRQLNNEVTAKRNVRFYGFSVADVPDVDFHNSVEEKFIWARSLGFDIVDYV 150 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 DGLV D+ + + LG A+ PR I+ K+A+ Sbjct: 151 AVTKDTVA--EEVERFSQAIENNDQPSDGLVLIYDDIAYGRSLGTTAKFPRDSIAFKWAD 208 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 + A T L +I+ RTG++ PVA +PV + G+ ++ A+LHN ++ L+ Sbjct: 209 EIAETTLKEIEWSPSRTGLINPVAIFDPVELEGSTVSRASLHNISVMEELE--------- 259 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 + VGD++ V +A +IP++ R DA P CP C + + Sbjct: 260 --LGVGDQISVYKANMIIPQL--AENQTRSGDAP---IPDTCPACGGKT-----EIEEEN 307 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512 CSA++++ HFVSRDA N++GL + L + D+FT Sbjct: 308 GIRTLVCPNQFCSAKKIKLFSHFVSRDAMNVDGLSEASLHKMMDK----GLLNELYDLFT 363 Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572 L+ ++ +I + GFG+ S + + ++L +F++SLGI +VG A+ + + Sbjct: 364 LKEHKE----EIIEMEGFGEKSFIIWRMPLRGTKKVTLPKFLYSLGIANVGLSNAKLICR 419 Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632 Y+ +++ A N + + +G II +A+ +++ N V+ LL+ V Sbjct: 420 YFE---------DDLDAIRNAEAEDFTAIDGIGPIIGEAVSGYFRLENNKQTVDRLLQYV 470 Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 R + ++ K V TG+L+ R + QE + LG + +++KTD +I Sbjct: 471 EIE-KRQTEETEKLLDGKTFVITGSLEHYENRKQLQEQIEILGGKATGSVTKKTDYLINN 529 Query: 692 DN--PGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + SK +KA +L + I+ EE+F+ +++ Sbjct: 530 NKNSASSKNKKAMELSIPIITEEEFMDMIK 559 >gi|163784741|ref|ZP_02179548.1| DNA ligase (NAD dependent) [Hydrogenivirga sp. 128-5-R1-1] gi|159879989|gb|EDP73686.1| DNA ligase (NAD dependent) [Hydrogenivirga sp. 128-5-R1-1] Length = 414 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 155/419 (36%), Positives = 226/419 (53%), Gaps = 32/419 (7%) Query: 2 KKRQL--IPIEAL-SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58 K RQL I IE L + E A K ++ L + I YHD YY + P+I D EYD L +I Sbjct: 13 KTRQLLKISIEDLKTKEDAEKIINDLREVIKYHDWKYYVLANPVISDYEYDKLFHLLVSI 72 Query: 59 AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118 +P+L + + P ++ + KV H P LSLE +N EDLR F R+ Sbjct: 73 EKKYPELITA---DSPTQRVPSGLIKEFPKVKHLAPMLSLENSYNEEDLRDFDRRVKEIT 129 Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP--RV 176 + I +++EPK DG I + YE FV A RGDG G+D++ ++ I TIP Sbjct: 130 GL---DEIEYSVEPKFDGAGIALVYENNLFVRGATRGDGAVGDDITPNLKVIRTIPLSAD 186 Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRY 235 + IE+RGEV I+K F +N E + G +ANPRNAA+G LR NP + R Sbjct: 187 FEKYGIKTIEIRGEVLINKELFKKINQERLEEGLPLFANPRNAAAGSLRLQNPKEVAKRG 246 Query: 236 LNFFVHGLGKTSEIFAKG--------QYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYN 286 L FV+ + T + E ++ + LGF ++ ++ Y N Sbjct: 247 LEAFVYQITYTVDENENNLLGTKLKKHSESIKMLYELGFKSPYKEIKVCKNIDEVIDYCN 306 Query: 287 EMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQI 346 + + R + PY+IDG+V KV++ SL LG + PRW I++KF +QA+T+L+D+ Q+ Sbjct: 307 QWQEKRDSYPYEIDGMVVKVNDISLYDTLGATSHHPRWAIAYKFQARQATTKLIDVVFQV 366 Query: 347 GRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKR 405 GRTG +TPV +LEPV IGG ++++ +L NED+IK +DIR+GD VLV+R Sbjct: 367 GRTGAITPVGKLEPVEIGGVVVSSVSLINEDFIK-----------EKDIRIGDLVLVER 414 >gi|317968249|ref|ZP_07969639.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CB0205] Length = 372 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 114/406 (28%), Positives = 197/406 (48%), Gaps = 39/406 (9%) Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I+ K+ ++A ++LL + Q+GRTG++TPVA EPV + G ++ ATLHN D Sbjct: 1 TQKAPRWAIALKYPAEEAPSKLLRLSCQVGRTGVITPVAEFEPVPLAGTSVSRATLHNAD 60 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 + L D+ GD ++V++AGE+IP+VV ++ R A+ P CP C Sbjct: 61 RLLEL-----------DLHAGDTIVVRKAGEIIPEVVRVLPELRPAAAERLELPHTCPEC 109 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +VR+ AA RC +C A L+H+VS+ A +++GLG + ++ Sbjct: 110 GSELVREEGE------AATRCVNS-SCPAILRGALRHWVSKGALDVDGLGSKLIEQLVDR 162 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + A ++ L S + G S NL ++ + R ++ L Sbjct: 163 ----GLVGSIAGLYRLDCALLCS------LERMGSKSAENLVAALADSKQQPWHRQLYGL 212 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI HVG A++LAK + S + + + ++ V +G IAQ++ +++ Sbjct: 213 GIHHVGEVNAKALAKAFPSAADLSTA-------ATETPEAITAVYGIGAEIAQSLQQWFS 265 Query: 618 NPRNICAVEALLKEVSP----SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 N + +L + + E + + + + V TGTL + R +AQ + Sbjct: 266 TGANQELLTSLERLGFSLASGDEEQPEPSGPAPLTGQTFVLTGTLPSLSRSQAQALIEAA 325 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G V+ +S+KT ++ G+ GSKL KA+ LG+ +++E LL Sbjct: 326 GGKVTGSVSKKTSYVVAGEEAGSKLSKAESLGIPVLDEASLQALLA 371 >gi|95930744|ref|ZP_01313477.1| DNA ligase (NAD+) [Desulfuromonas acetoxidans DSM 684] gi|95133224|gb|EAT14890.1| DNA ligase (NAD+) [Desulfuromonas acetoxidans DSM 684] Length = 690 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 151/709 (21%), Positives = 280/709 (39%), Gaps = 111/709 (15%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDAL-KRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L + ++ + +Y+ +P+I D +YD + + P L + + Sbjct: 70 AELVEFLTIAN-SFYRDGQPLISDHDYDHIALAELKTRQPSHPFL----------HTVEP 118 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS--IFFTLEPKIDGTM 138 E + V LS EK + ++L ++ RI++ + + + F + PK+DG Sbjct: 119 EPKFTGKTVELPARMLSTEKAYTDKELSDWLKRIHKAANEIGRDPAGLQFRITPKLDGFA 178 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 ++ G RGDG G D++ + + GE+ + ++ F Sbjct: 179 A---FDDGD--RLYTRGDGRRGTDITRAFERGLVVANNQPRGLGA-----GEIVVQRSYF 228 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 A + Y NPRN + +++ + Sbjct: 229 AANLAQ-------DYENPRNFQASVVKEKALEPAVEQALGNQAVVFYPFSTLP------- 274 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 R + I S + +R++L YD+DG+V ++ + L+ +G Sbjct: 275 -------------YRVRRSDDLIDSVAALSRELRASLDYDMDGIVIEITDDELKTYMGAT 321 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 RW I++K +++A ++L + Q R+G + PVA +EP + GALI AT H+ Sbjct: 322 RHHHRWQIAYKQNQEKAEVKVLQVVPQTSRSGRVNPVAEVEPTRLSGALIQRATAHHYGM 381 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 ++ + I + + R+GEVIPK++D++ A P+ CP C Sbjct: 382 VR-----------DKGIGPDAVIELTRSGEVIPKIIDVV------KAVEPQIPASCPSCD 424 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 + + D + C C AQ ++HF R NI+G G ++ + + Sbjct: 425 TELFWDSD--------YLYCPNNTGCPAQISHTIEHFF-RTLGNIDGFGPATIEKLYTNN 475 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI--SLERFIFS 556 IR ++ LQ Q GFG NL + + + R+ RF+ + Sbjct: 476 -----IRTIDAVYGLQADQLEGM-------GFGPKQSENLVNELQRSRHEVIEDWRFLAA 523 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 G+ +G L ++ + + ++ + + A+ +V+ + Sbjct: 524 FGVFRMGGGNCERLLGHHR-LEEIFELSE----------EQIVAIEGFAERTAEVVVKGF 572 Query: 617 QNPRNICAVEALLKEV-----SPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQEYV 670 R + L +P + + + + + I K LVFTGT+ R + Sbjct: 573 A--RIRPLFDKLQALGFNLQRTPLVSELQASGALNPIAGKLLVFTGTMTHGSRDDMKAEA 630 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 +LGA V A ++ KTD ++ GD G SKL A GV+I+ EEQ+L L+ Sbjct: 631 KKLGAKVGASVTGKTDYLVTGDKVGASKLNAATSKGVEILTEEQYLKLI 679 >gi|257439785|ref|ZP_05615540.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165] gi|257197805|gb|EEU96089.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165] Length = 449 Score = 277 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 137/488 (28%), Positives = 235/488 (48%), Gaps = 41/488 (8%) Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295 ++ FV + + E L ++ LG PV+ + ++ ++ R+ L Sbjct: 1 MSIFVFNVQQVRGRELTSHAESLDYLKSLGLPVSPRYHIVHDIEDAIAEIEQIGQNRAAL 60 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 +D+DG V KV+ F+ ++ LG + PRW I+ K+ + T L I++ +GRTG+LTP Sbjct: 61 DFDMDGAVIKVNNFAQRELLGSTNKFPRWAIAFKYPPEVKETTLRSIEVGVGRTGVLTPT 120 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 A +PV + G ++ ATLHNED+I+ L + +GD + V++AG++IP+V+ Sbjct: 121 ACFDPVFLAGTTVSRATLHNEDFIRQL-----------GLCIGDTIQVRKAGDIIPEVIG 169 Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475 + +E PDAQP+ P FCP C + V + AA RC + + HF Sbjct: 170 VTRHE--PDAQPYQMPEFCPSCGAPAVHLEDE------AALRCVNPECPAQAL-RNIIHF 220 Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 SRDA +I+GLG + AD++ L Q + + F + S Sbjct: 221 ASRDAMDIDGLGTMVATQLVDK----GLVHSAADLYDLTIEQLLT------LEKFKEKSA 270 Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 NL +I + +L++ +F+ GIR++G + A LA+++ S Q + Sbjct: 271 NNLLQAIEASKQNNLDKLMFAFGIRNIGDKAAALLAEHFGSLQAIREATE---------- 320 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655 + + G ++AQ++ EF+ V L + E ++ K LV T Sbjct: 321 EQIGEIDGFGGVMAQSVTEFFAKDGTTDLVHRLADAGVNMQWKGEPKGD-KLAGKTLVVT 379 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL+ + R +A+ + + G S +S+KT ++ G GSKL KAQ LGV ++ E +FL Sbjct: 380 GTLETLSRSEAEALIVKNGGKASGSVSKKTAYVVAGAAAGSKLTKAQALGVPVLTEVEFL 439 Query: 716 FLLQQYNT 723 ++ + + Sbjct: 440 AMIAEDKS 447 >gi|294669029|ref|ZP_06734115.1| DNA ligase, NAD-dependent [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309021|gb|EFE50264.1| DNA ligase, NAD-dependent [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 730 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 214/769 (27%), Positives = 335/769 (43%), Gaps = 191/769 (24%) Query: 102 WNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGE 161 ++ ++ F R+ D ++ + +EPK DG I++ Y G V AA RGDG +GE Sbjct: 2 FDHAEMYAFDQRVRDGL---DGSNPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGE 58 Query: 162 DVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAA 220 DV+ ++ + IP L N PE+IEVRGEV + K DF ALN G+KP+ANPRNAA Sbjct: 59 DVTQNVKTVANIPLRLHGENPPELIEVRGEVLMLKADFAALNKRQAENGQKPFANPRNAA 118 Query: 221 SGILRRLN-PTDITRYLNFFVHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTF 278 +G LR+L+ R L+FF + + + A+ + L + LGF + NG Sbjct: 119 AGSLRQLDSRITAQRKLHFFPYSVARQQGGFEAEEHIQELAYFQELGFSLPNGNFGCFKN 178 Query: 279 HGIVSYYNEMKSIRSTL-PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAST 337 V + E + PY+IDG+V KV+ + Q++LG +R+PRW I+HKF ++A T Sbjct: 179 IDEVLAFYEQMQQKRPELPYEIDGMVVKVNSLAQQRELGFISRAPRWAIAHKFPAEEALT 238 Query: 338 RLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRV 397 + ID+QIGRTG +TPVARL PV +GG +TNATLHN+D + +D+RV Sbjct: 239 IVEAIDVQIGRTGAVTPVARLHPVFVGGVTVTNATLHNQDEVSR-----------KDVRV 287 Query: 398 GDRVLVKRAGEVIPKVVDIIVNERHPDA-------------------------------- 425 GD V+V+RAG+VIP+VV +I R Sbjct: 288 GDTVVVRRAGDVIPEVVRVIFERRPMQETAVAVSDDLKQQQDDLFAETPSANQTQSVPLH 347 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 +P+ P+ CPIC+S + R+ A RC+GG+ C AQ+ + L HF SR A +I+G Sbjct: 348 KPYRLPTHCPICRSEIEREEGE------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDG 401 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI------------------ 527 LG++Q++ + +R AD++ L + + Sbjct: 402 LGQKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETADKGSSENENGDAETVSDDLS 457 Query: 528 -------LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580 N+ I + L RF+F+LGIRHVG A++LA+ + S ++ Sbjct: 458 ESNTPNGKKQPTKWAENILAGIEASKTPELARFLFALGIRHVGERTAKTLAQAFGSLEHV 517 Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS------- 633 + I+A +P +G ++A++I F+ ++ LL Sbjct: 518 RRAPEPILAC----------LPDIGTVVARSIAHFFAQDAQQAMIDELLAAGVAPQTQAV 567 Query: 634 -------------------PSIGRHEKNVSSEIENKKLVFTGTLQKIQ---------RHK 665 I ++ E+ K + LQ + R + Sbjct: 568 TIPPARHAEPQRWIARLPGFKISENKAQALWELAGKSI---DGLQTDKALPADWQIWRSE 624 Query: 666 AQ--EYVTQLGAVV----SAI--------------LSRKTDIIIVG-------------- 691 AQ + L ++ ++ KT ++ G Sbjct: 625 AQNAALLENL--KSFFAQTSSENQEATISDDVNEAVAGKT-FVLTGTLPTLKRDQAQALI 681 Query: 692 DNPGSK---------------------LEKAQQLGVKIMNEEQFLFLLQ 719 + G K LEKA LGV +++EE+ L +L+ Sbjct: 682 EAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVAVLSEEELLAMLK 730 >gi|322379217|ref|ZP_08053608.1| NAD-dependent DNA ligase LigA [Helicobacter suis HS1] gi|321148357|gb|EFX42866.1| NAD-dependent DNA ligase LigA [Helicobacter suis HS1] Length = 680 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 161/696 (23%), Positives = 273/696 (39%), Gaps = 95/696 (13%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++ L ++ + YY + P+I D+ YD L R+ +P P P ++ Sbjct: 6 EDYKHLVDKLCQYAYHYYVLASPLISDAIYDQLYRQVLDYETKYPQNIL---PYSPTQRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS-----------IF 127 GG + +L K TH + SLE ++N+E+L+ +I RI Sbjct: 63 GGVVLETLPKHTHKVRMWSLENVFNLEELQVWINRIVESEHALKTKGRISQTYPSASFTR 122 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 FT PK+DG + + YE G+ A++RG+G GE V+ + I +IP L + + IE+ Sbjct: 123 FTCSPKLDGASLNLYYENGQLQSASMRGNGLEGELVTHNAKTIHSIP--LIIPYTKPIEI 180 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT 246 RGEV + + DF ALN E + +AN RNA G LR+L+ R L F+ GLG Sbjct: 181 RGEVVLQREDFKALNAERLKQNLPLFANARNATVGSLRQLDSKIAAQRKLTFYPWGLGLV 240 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 E + + M ++ GF V + I + + RS + +D DG+V + Sbjct: 241 EEKYTSLKQSMQM-VKDWGFLSLEFV-LCESLEAIEETFKLFHTRRSEVTFDADGMVVML 298 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ LQ LG +SPR+ ++KF + T+LLD+ Q+GR+G +TPVA LEP+ + GA Sbjct: 299 DDLYLQSILGFTIKSPRFGFAYKFPATEKHTKLLDVLNQVGRSGAITPVALLEPIKLEGA 358 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 I+ ATL N I+ + + + D V++ R+G+VIPK++ + + R+ + Sbjct: 359 CISKATLDNYTQIQ-----------QQGLMINDTVVIVRSGDVIPKIIKPLKHLRNGTQK 407 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P + P+ CP CQS + + + + K + Sbjct: 408 PITPPTHCPACQSVLQKQPLNVCPECNLPLLLKNKPNFCPKCQILFKKYTHCPVCQTLLG 467 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 + + +S D F L+ ++ ++ + N + Sbjct: 468 KQHKKCPQCQS-DVTFPKHCLQCGGDLELKEYCYRCDLDLSNKDRYLFCPNKDCMARVKE 526 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYY------------------------LSYQNFAQ 582 +I L I+ +G ++ L + QN Q Sbjct: 527 SIVYFASKHGLEIKGLGDKVVAQLLQAGLIKGVIDLYSLEEKALLELEGWQQKKAQNLLQ 586 Query: 583 EINNIIAHN------------------------------NDDWLSLIRVPLVGD------ 606 I + + + + G Sbjct: 587 AITKSKQAPLWRFISALGIEHIGKGASKILAQHFGLEVFDKTYQEIASLEGFGAKGLKEE 646 Query: 607 --IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 IA + V F N ++ LL V+P + Sbjct: 647 EKKIAASFVRF--VKENKGLIKQLLTLVNPIATEKK 680 >gi|219127319|ref|XP_002183885.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404608|gb|EEC44554.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 864 Score = 273 bits (699), Expect = 6e-71, Method: Composition-based stats. Identities = 203/781 (25%), Positives = 325/781 (41%), Gaps = 115/781 (14%) Query: 17 ARKELSSLEQEISYHDDCYY--------QYSKPIILDSEYDALKR-----RCDAIAHAFP 63 +EL L ++ HD YY P + D+ R + A Sbjct: 102 IYEELVRLASDLRRHDALYYESEMARNSVGRIPPCSN---DSNVRVAWAYKPRGTEDASE 158 Query: 64 DLA---RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 R PN + + K H P LSL+ + E+L ++ RI + Sbjct: 159 TFFCRPRRPTPNDATRIVVDRV-----KRPHVRPMLSLDNVHREEELLAWLERIRKKLTV 213 Query: 121 KDDN-SIFFTLEPKIDGTMITIRYEKGK-------FVYAALRGDGHSGEDVSACIRAIPT 172 D S+ EPK+DG ++ RYE+ + FV+A+ RGDG G+DV+ ++ Sbjct: 214 DDGPSSLTILTEPKLDGLSLSCRYEQRQSNTTLYTFVWASTRGDGKQGQDVTHAVQQGNL 273 Query: 173 IP----------RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222 +P S P+++E+RGE+ + F +L E +AN RNAASG Sbjct: 274 VPLTLDWASLVADPESYTHPKVLEIRGEIVLPTTVFQSLEGE-----GLAFANARNAASG 328 Query: 223 ILRRLNPTDIT-------RYLNFFVHGLGK------------------TSEIFAKGQYEM 257 IL R L F+ + + + Sbjct: 329 ILLRKESITDPVASQALREKLCFYAYDVAGDDGFTVSGVQLRRVLPTLGFRVPEPVAVTR 388 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+ + VN+ H + + K+ ++ YD+DG V+KV E L+ LG+ Sbjct: 389 LRLNNTTAWNVNDIQALLKYHHSMQHHRQGKKTSQTYGDYDMDGAVHKVSESDLRIILGQ 448 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 R+PRW I+HKFA A T LLDI +Q+GRTG LTPVA L+PV + G ++ ATLHN Sbjct: 449 SNRAPRWAIAHKFAPLAAVTTLLDITVQVGRTGALTPVAILQPVELAGVVVRRATLHNFA 508 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS-----FPS 432 +++ + S + VLV+RAG+VIP+VV I F FP Sbjct: 509 HMQQVLGSTTTIAKE------SSVLVRRAGDVIPQVVQRIAGTDAGSNNGFDTISVAFPE 562 Query: 433 FCPICQSRVVRDLNPKT---GKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 CP C S VV D KT RC C+ + + + H VSRDA ++ GL + Sbjct: 563 TCPACGSPVVTDEVNKTASKETAGQVLRCGGPQWNCTPRAVGSIAHAVSRDALDVTGLSE 622 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI-LGFGDVSVTNLYDSINKRRN 547 ++ + A I P+DIF L + E G + + Sbjct: 623 ARIMQLIE----AGFISRPSDIFALAKSPTQLEKLAEMDGWGPKSAQNLAAVANRIAKNG 678 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP----- 602 ISL RF++SLGIR G + +A Y S ++F +++ Sbjct: 679 ISLSRFVYSLGIRFSGVHSSALIAAAYGSVEDFLKDVEAASTLPIKQVQDQESNDEQVQS 738 Query: 603 ------------LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-----S 645 +G ++ ++ F Q+ + A E+L + VS Sbjct: 739 FARLREETDITKGIGPVLLNSLDTFAQDQELVEAAESLASSILVLADDSAMVVSTLATTG 798 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS-AILSRKTDIIIVGDNPGSKLEKAQQL 704 +++ +VFTG++ ++ R +A+++ +GA + +S+ T +++ G+ G KLE+A++L Sbjct: 799 PLQDMAVVFTGSISEMSRSEAKKWAKVMGAKSTPGSISKLTGLVVAGEKGGKKLEQAEKL 858 Query: 705 G 705 G Sbjct: 859 G 859 >gi|57168176|ref|ZP_00367315.1| DNA ligase (NAD) Cj0586 [Campylobacter coli RM2228] gi|57020550|gb|EAL57219.1| DNA ligase (NAD) Cj0586 [Campylobacter coli RM2228] Length = 467 Score = 273 bits (699), Expect = 6e-71, Method: Composition-based stats. Identities = 153/482 (31%), Positives = 247/482 (51%), Gaps = 36/482 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +KE + YY+ +P+ D EYDAL R + P K Sbjct: 3 KKEYLEKVALAASWMRAYYEKDEPLASDEEYDALIRELRVFEEQN---KDEISKDSPTQK 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 I + K+ H S+E +++ +LR + R F +EPK DG Sbjct: 60 IAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAR--------CEENFFIEPKFDGA 111 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + Y+KG+ V A RGDG GED++ + I IP ++N E IE+RGEV I K+D Sbjct: 112 SLNLLYDKGRLVSGATRGDGEIGEDITLNVLEIDNIP--KTINYKEKIEIRGEVVILKDD 169 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N++ + + +ANPRNAASG LR+L+ + R L F+ G+G + + E Sbjct: 170 FEKINEKRARLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVG-ENTLNFTKHSE 228 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++Q +R LGF ++ ++ ++ YNE+ S+R P +DG+V +VD+ +L K+LG Sbjct: 229 VMQFIRELGFLKDDFIKLCANLDEVLKAYNELLSLRDKKPMMMDGMVVRVDDLALCKELG 288 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + P++M + KF + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN Sbjct: 289 HTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVIVKSATLHNF 348 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I L + + D V V R+G+VIPK+ + R+ P+ CP Sbjct: 349 DEIARL-----------GVCINDEVSVIRSGDVIPKITKVF-KIRNNLRTKIIKPTVCPE 396 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S ++ + A L C A+ + + HFVS+ NI+GLG+ ++ FK Sbjct: 397 CLSELLDEG---------AFLKCQNLDCKARLVNSIIHFVSKKCLNIDGLGENIVELLFK 447 Query: 497 SE 498 + Sbjct: 448 EK 449 >gi|330800435|ref|XP_003288242.1| hypothetical protein DICPUDRAFT_152457 [Dictyostelium purpureum] gi|325081750|gb|EGC35255.1| hypothetical protein DICPUDRAFT_152457 [Dictyostelium purpureum] Length = 835 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 177/809 (21%), Positives = 313/809 (38%), Gaps = 154/809 (19%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA-FPDLARSEDPNGPLNK 77 E++ L +I ++D YY S I D EYD L ++ +++ D +++ + NK Sbjct: 50 DEINELRNKIKRYNDLYYNKSISEISDYEYDKLFKKLESLEKQINNDEDGNDNASLITNK 109 Query: 78 IGGEMNLSL--FKVTHSIPTLSLEKIWNIEDLRKFITRIY-------------------R 116 +G + + K H+ LSL+ +++ED++ F +I Sbjct: 110 VGAPVRSNGNNNKYRHTTRMLSLQNTYSLEDIQSFKNKIEKFLLKKLKLENNTTSNSDLN 169 Query: 117 FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTI--- 173 N++ +++E K DG I++ Y K V RGDG GED+++ Sbjct: 170 TLSSFGINNLEYSMELKYDGIGISLVYSDSKLVRILTRGDGEIGEDITSNALQFIPQLNK 229 Query: 174 ----PRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR-KPYANPRNAASGILRRLN 228 + + E+RGEV ++K +N Y N RN SGILR+ Sbjct: 230 LINLKLPNQYSNYKEFEIRGEVVLNKTYLETINKIKSDNNDTHQYKNTRNIVSGILRKNL 289 Query: 229 PTDITRY--------------------------------LNFFVHGLGKTSEIFAKG--- 253 +FF + +++ Sbjct: 290 IEIDDEQHNENNVDDDNSSNSSSNVKKNDIEQLLHNNIKFDFFAYNFIPSNKNQTINGDT 349 Query: 254 QYEMLQKMRCLGFPVNN----------GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 Q L ++ +GF V+ +Q + I Y + R +DIDG+V Sbjct: 350 QSSRLGLLKSIGFQVDPGADVISLPTLNNKQPHDIGPIQQYIEKWNENRFKFQWDIDGIV 409 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 K++ Q +LG+ RSPRW ++KF K + +LDI +Q+GRTG +TPVA ++PV I Sbjct: 410 IKINSIDTQTKLGDINRSPRWAFAYKFNAKSEVSTILDIVLQVGRTGKVTPVALVDPVVI 469 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G I+ ATL+N +YI+ L + G +VL++RAG+VIPK++ I Sbjct: 470 HGVTISRATLNNLNYIQKLQ-----------LNKGSKVLIERAGDVIPKIISKINVPEQQ 518 Query: 424 DAQPFSFPSF--------CPICQSRVVRDLNPKTG--KLVAAHRCTGGLACSAQQLERLK 473 + P C + V N K C QQ + + Sbjct: 519 PQEQQLQPEDGYLKNIFKCNSNGNLVCPCANESELIQKPGYIDYFCVDSNCPDQQFQEIS 578 Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533 FV + A NI+G+G Q+ F+ I D++ L++ + ++ + G+ V Sbjct: 579 WFVDKKAMNIKGIGISQIKDLFEHN----FIEDAGDLYLLKKYKS----QLLELKGYNHV 630 Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593 V N+ ++I + ++ L + +GI +G ++ LA+ + N Sbjct: 631 KVNNMLEAIEESKSRGLSSLLCGMGIPGIGRANSKILAQKFQHLDNLINA---------P 681 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQ--NPRNICAVEALL---------------------- 629 S+ +G ++AI ++ +P + L+ Sbjct: 682 SIQSIENQSKLGRQTSEAIYNYFNPIDPTEKEYINFLIYKFKENNLNLSYTNNNNDNDND 741 Query: 630 ---------------KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ-L 673 + +I N+ + I K +V TG L R ++ + Sbjct: 742 NDNDNDNDNDNDNDNNNNNNNIESKNINIDNPIYKKNIVITGKLSIGDRDSVKDILESKY 801 Query: 674 GAVVSAILSRKTDIIIVGDNPGS-KLEKA 701 V + ++ TDI+++G P + K+ KA Sbjct: 802 NCKVQSTINSLTDILLIGGKPANAKISKA 830 >gi|290242978|ref|YP_003494648.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. K90mix] gi|288945483|gb|ADC73181.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. K90mix] Length = 652 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 151/710 (21%), Positives = 255/710 (35%), Gaps = 107/710 (15%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALK-RRCDAIAHAFPDLARSEDPNGPLNKIG 79 + L + Y + +P++ D+ YD L P L E Sbjct: 30 VDELATACERLNASY-RAGQPLVPDAVYDHLFIATLSEKDPEHPFLKAVEPE-------- 80 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD--DNSIFFTLEPKIDGT 137 GE V H P LS +K + ++LR+F+ R+ + ++ F + PK+DG Sbjct: 81 GEAFEG-DTVKHDTPMLSTDKAYTEDELRRFLGRVEVAAEALGIRSETLTFRMTPKLDGI 139 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 R G+ V RG+G +G D+S P P E+ + + Sbjct: 140 AGMQR-PDGRLV---TRGNGFAGADISHAFERGLRTPDGSMEPGPG------ELVLEEMF 189 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 F +PRN +G + + + Q Sbjct: 190 FQDEIRVAF-----GMPHPRNFVAGFVGADTVKPHHQKAADAQAIIFFPYRQLPAWQASA 244 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 M M+++R +PY DG+V +V + +++ +G Sbjct: 245 AVVMASW--------------------QERMEALRQAVPYRTDGVVLEVTDETVKAHMGS 284 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 + RW ++ K + A R+ DI IQ GRTG +TPV +PV + GA I+N T H Sbjct: 285 TSHHHRWRVALKTKGEVAHVRVRDIRIQTGRTGRITPVLEFDPVLLTGARISNVTAHTAA 344 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 + + + VG + + RAG+VIPK+ ++ P + CP C Sbjct: 345 NL-----------AQQGLGVGAEIEISRAGDVIPKLERVLEPASEP-----MTVTHCPSC 388 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 G+ C + C AQ RL+HF D F Sbjct: 389 GHEA-----EVEGEYAV---CPNTVGCLAQAEARLRHFFHVMGNA---------DLFGPK 431 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 D+ L + + G V L + + + RF+ +L Sbjct: 432 TVEVLVENGHTDLRGLFDLNAVAFVSMGFGPGQASNLVRELARCLREA--VPDWRFLAAL 489 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 G+RH+G +R L Y + + N + V G I + +I E Q Sbjct: 490 GLRHLGRGDSRKLLAVYP-----------LESITNLTAEDIAAVEGFGPITSASIAEQLQ 538 Query: 618 NPRNICAVEALLKEVSP----SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 R +EA+++ + + + +VFTGTL R + +E L Sbjct: 539 EQRER--IEAMIRLGFNLERTPLAGEGAAAEGPLAGQSIVFTGTLTLGSRGELEEQARGL 596 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-------VKIMNEEQFLF 716 GA + + ++ KT I++ G+ GSK +KA+ + V+I++E + Sbjct: 597 GATIQSGVNSKTTILVCGEKAGSKRKKAEAINEKAGKEQVRILDEAAWAA 646 >gi|254479199|ref|ZP_05092546.1| NAD-dependent DNA ligase adenylation domain subfamily [Carboxydibrachium pacificum DSM 12653] gi|214034862|gb|EEB75589.1| NAD-dependent DNA ligase adenylation domain subfamily [Carboxydibrachium pacificum DSM 12653] Length = 271 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 87/267 (32%), Positives = 138/267 (51%), Gaps = 11/267 (4%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E + E+ARK + L ++I+YH+ YY +P I D EYD L R + +P+ Sbjct: 13 EFMDREEARKRIEELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEFK--- 69 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++GGE TH +P LSL + E+++ F R+ + + Sbjct: 70 TPDSPSQRVGGEPLDEFEPFTHIVPMLSLANAFTAEEIKDFDRRVKEAVG-----EVEYV 124 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 +EPKIDG + + YE G F + RGDG GE+V+ ++ I +IP L ++ + VRG Sbjct: 125 VEPKIDGLSVELVYENGIFTVGSTRGDGIVGENVTPNLKTIKSIPLRLKDSVN--LVVRG 182 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EV++ K F LN+E G +ANPRNAA+G +R+L+P R L+ F+ L + Sbjct: 183 EVFMPKASFAKLNEERAERGESLFANPRNAAAGSVRQLDPKVTAKRDLDIFIFNLQRIEG 242 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQA 275 K E L+ ++ GF V +++ Sbjct: 243 RDFKTHVEALEFLKEQGFKVIPFIKKC 269 >gi|218667573|ref|YP_002425666.1| DNA ligase, NAD-dependent, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519786|gb|ACK80372.1| DNA ligase, NAD-dependent, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 609 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 155/697 (22%), Positives = 247/697 (35%), Gaps = 100/697 (14%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++ + Y + PI+ D+EYDAL R P L + E Sbjct: 3 LVHKLEEANAAY-RAGAPIMSDAEYDALVERLRREQPDHPYL----------QTVEPEPE 51 Query: 84 LSL--FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141 KV H P LS EK + DL ++ + + R + + + + + K+DG + Sbjct: 52 NIFGGAKVRHHAPMLSTEKAYTESDLIRYFSAVTRQAARLGMDEVIYAMTAKLDGLAGSR 111 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201 G V A RG+G GED+ I + ++ GE+ + K+ F Sbjct: 112 DRAHG--VDLATRGNGLQGEDIGKAFARGLKI-------VGADVDGPGEIVMPKDFFEEH 162 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 + + +PRN G + D + + Sbjct: 163 LVPL------GFKHPRNFMVGFVGADTEKD---------------------HHRLVKESG 195 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEM-KSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 P N R I+ + + IR PYD DG+V +V+E L+ LG Sbjct: 196 MAHFVPYANLPRFYADKDTILRDIAYISEDIRKNTPYDTDGIVIEVEEPELRAALGSTNH 255 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 RW I++K + A T + + Q GRTG +TPV ++PV + GA I AT HN + Sbjct: 256 HHRWQIAYKTKGETAETTVTGVVWQTGRTGRITPVIEIDPVELSGATIRRATAHNFQKAR 315 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 + VG RV + R+GEVIP ++D++ P+ CP C Sbjct: 316 K-----------DGLGVGSRVTMIRSGEVIPFIMDVLSPAPLD------VPTACPCCNGP 358 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 V + + C AQ + HF I G + Sbjct: 359 V---------EEDGEYLTCVNPHCEAQAEGAISHFFK-----IMGTADGFGPKAVEKIVA 404 Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560 A I + + R G G + RF+ + GIR Sbjct: 405 AG-ITDILAVLDMTRADFEGMGF-----GPGQAENLEREMKRCMSTPVEDWRFLAAFGIR 458 Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 ++G ++ I + A N ++ + + A I Sbjct: 459 YLGRGDSK----------ALLCAIGGLDALNGITPAQIMAIDGFAEKTALCIAHDLTWRW 508 Query: 621 -NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 I AV ++ S + + LVFTGT K R + LGA V + Sbjct: 509 MEIEAVRDRMEAPLVSSAPAGDIGTLPLAGMSLVFTGTFSK-DREVMETQAEALGAKVQS 567 Query: 680 ILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715 ++ KT ++++G+ PG SK KA LG + E ++L Sbjct: 568 GVNGKTSVLVIGEKPGASKTTKAAALGTPVWTEAEYL 604 >gi|332992966|gb|AEF03021.1| DNA ligase [Alteromonas sp. SN2] Length = 326 Score = 267 bits (681), Expect = 6e-69, Method: Composition-based stats. Identities = 115/363 (31%), Positives = 187/363 (51%), Gaps = 38/363 (10%) Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 + +GG ++NATLHN+D I L ++VGD V+++RAG+VIP+VV ++ + Sbjct: 1 MFVGGVTVSNATLHNQDEIDRL-----------GVKVGDYVIIRRAGDVIPQVVSVVQAK 49 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R + + FP+ CP+C S V + + A RCTGGL C+AQ+ + LKHF SR A Sbjct: 50 RDDNVKDIVFPTDCPVCGSNVEKLEDE------AVARCTGGLICAAQRKQALKHFASRKA 103 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 F+I+GLG + +D A + PAD F L+ + + S L Sbjct: 104 FDIDGLGDKLVDQLVD----ADLVHSPADFFNLKLGDVVG------LERMAEKSAAKLLL 153 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 S+ + +L +F+++LGIR VG A +LA ++ + + LI Sbjct: 154 SLEASKATTLAKFLYALGIREVGEATAANLALHFETLEAIRNASE----------DELIE 203 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQ 659 V VG I+A + F+ P N ++ALL+ +K S+ ++ K V TGTL Sbjct: 204 VQDVGGIVAAHLHNFFNEPHNTDVIDALLEAGINWPAIEKKPQSALPLDGKTCVVTGTLS 263 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ R + + LGA V+ +S+ T ++ G+ GSKL KAQ+L V++ +E + L L Sbjct: 264 EMGRSDVKAKLQLLGAKVAGSVSKNTSFLVAGEKAGSKLTKAQELDVEVWDEAKLLAFLA 323 Query: 720 QYN 722 +++ Sbjct: 324 EHD 326 >gi|291060005|gb|ADD72740.1| DNA ligase, NAD-dependent [Treponema pallidum subsp. pallidum str. Chicago] Length = 840 Score = 267 bits (681), Expect = 6e-69, Method: Composition-based stats. Identities = 149/731 (20%), Positives = 276/731 (37%), Gaps = 103/731 (14%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + A++ + LE+ I +H D YY ++ I D +DAL + P L Sbjct: 18 MSTAQRRVQELEKLILHHQDRYYN-AESDISDDAFDALWEELARLDPGNPLLKA------ 70 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 IG + K H +P S K + E + + + F ++ K Sbjct: 71 ----IGSDSQRDAVKKRHIVPMGSQHKAADEESFSAWAKK---------NALQAFLVQHK 117 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTI------PRVLSLNIPEIIEV 187 +DG + ++YE+G F A RG+G G+DV+A +R + N+P V Sbjct: 118 LDGVSLELQYERGHFCCALTRGNGIVGDDVTANVRGMRGFVPTLTAEWGPCGNLPFTGGV 177 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247 RGEV + K+ + +AN RN +GIL+R + T + T Sbjct: 178 RGEVIMHKDIHRSHY--------PTHANCRNTVNGILKRKDGRGRTHLHIVCYDAVPGTP 229 Query: 248 EIFAKGQYEMLQKMRCLGFPVNN-----GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G + L + + +V+ +E+ R LPY IDGL Sbjct: 230 GKPFTGSLPFADETEKLAWLARQGFVTVHSHRCANAQEVVALRSEIMRTRELLPYSIDGL 289 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V K + Q + P+ I+ KF+ ++A T L D+ Q TP+ +PV Sbjct: 290 VVKSTDLDFQD---AQLPRPKKQIAFKFSTQEAITTLRDVQWQTSGVT-YTPIGITDPVR 345 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G + A L N + + L +++G VL+ + GE+IPK+ ++ Sbjct: 346 LAGTTVKRANLCNPNMLTKLC-----------LKIGSHVLISKRGEIIPKIEALVST--P 392 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 AQ P+ C C + + + C + + Sbjct: 393 AHAQEIHIPTQCTSCNTVL--------ENSGSRLFCPNVNCPLLSHHRITRWI---ECLE 441 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+ +G + + F+ + +R D++TL I G+ + + ++I Sbjct: 442 IKHVGTELIQRLFEEKK----VRRIPDLYTLTCEDLI------EIEHVGNATAKKILEAI 491 Query: 543 NKRRNISLERFIFSLGIRHVGAEIA-RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 + ++ I+L+ FI GI +G + + + + + + +L + Sbjct: 492 HHKKEIALQTFIAGFGIEGIGETMGEKLICAGFDTLEKVLHATT----------ETLESI 541 Query: 602 PLVGDIIAQAIVEFYQ--NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 G +A+++V ++ ++ S + K F+G+L+ Sbjct: 542 YQFGTELAKSVVTGIARVKDDMCELLDR-----GFVRILAKQQAESPLRGKSFCFSGSLR 596 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL----GV--KIMNEEQ 713 R + LG VV ++R +I ++ AQ+L GV +I++E++ Sbjct: 597 NGDRATI-HRIRALGGVVRTSVTRDLSYLIF-ESLSQPYRTAQKLKKEQGVALEIISEDE 654 Query: 714 FLFLLQQYNTT 724 F LL Q + + Sbjct: 655 FCRLLDQASAS 665 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQ 703 + F+G L + R +A V +LG V +S + ++ D K + A + Sbjct: 762 PLHGMSFCFSGDLDGMTRAQAIALVQRLGGTVKTAVSTQLTYLVSNDPHGQSRKCQNAVR 821 Query: 704 LGVKIMNEEQFLFL 717 GV+I++E FL L Sbjct: 822 CGVRIISEHVFLAL 835 >gi|15639622|ref|NP_219072.1| DNA ligase (lig) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025860|ref|YP_001933632.1| DNA ligase [Treponema pallidum subsp. pallidum SS14] gi|6014987|sp|O83642|DNLJ_TREPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781445|sp|B2S3M4|DNLJ_TREPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|3322933|gb|AAC65609.1| DNA ligase (lig) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018435|gb|ACD71053.1| DNA ligase [Treponema pallidum subsp. pallidum SS14] Length = 823 Score = 267 bits (681), Expect = 6e-69, Method: Composition-based stats. Identities = 149/731 (20%), Positives = 276/731 (37%), Gaps = 103/731 (14%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + A++ + LE+ I +H D YY ++ I D +DAL + P L Sbjct: 1 MSTAQRRVQELEKLILHHQDRYYN-AESDISDDAFDALWEELARLDPGNPLLKA------ 53 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 IG + K H +P S K + E + + + F ++ K Sbjct: 54 ----IGSDSQRDAVKKRHIVPMGSQHKAADEESFSAWAKK---------NALQAFLVQHK 100 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTI------PRVLSLNIPEIIEV 187 +DG + ++YE+G F A RG+G G+DV+A +R + N+P V Sbjct: 101 LDGVSLELQYERGHFCCALTRGNGIVGDDVTANVRGMRGFVPTLTAEWGPCGNLPFTGGV 160 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247 RGEV + K+ + +AN RN +GIL+R + T + T Sbjct: 161 RGEVIMHKDIHRSHY--------PTHANCRNTVNGILKRKDGRGRTHLHIVCYDAVPGTP 212 Query: 248 EIFAKGQYEMLQKMRCLGFPVNN-----GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G + L + + +V+ +E+ R LPY IDGL Sbjct: 213 GKPFTGSLPFADETEKLAWLARQGFVTVHSHRCANAQEVVALRSEIMRTRELLPYSIDGL 272 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V K + Q + P+ I+ KF+ ++A T L D+ Q TP+ +PV Sbjct: 273 VVKSTDLDFQD---AQLPRPKKQIAFKFSTQEAITTLRDVQWQTSGVT-YTPIGITDPVR 328 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G + A L N + + L +++G VL+ + GE+IPK+ ++ Sbjct: 329 LAGTTVKRANLCNPNMLTKLC-----------LKIGSHVLISKRGEIIPKIEALVST--P 375 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 AQ P+ C C + + + C + + Sbjct: 376 AHAQEIHIPTQCTSCNTVL--------ENSGSRLFCPNVNCPLLSHHRITRWI---ECLE 424 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+ +G + + F+ + +R D++TL I G+ + + ++I Sbjct: 425 IKHVGTELIQRLFEEKK----VRRIPDLYTLTCEDLI------EIEHVGNATAKKILEAI 474 Query: 543 NKRRNISLERFIFSLGIRHVGAEIA-RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 + ++ I+L+ FI GI +G + + + + + + +L + Sbjct: 475 HHKKEIALQTFIAGFGIEGIGETMGEKLICAGFDTLEKVLHATT----------ETLESI 524 Query: 602 PLVGDIIAQAIVEFYQ--NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 G +A+++V ++ ++ S + K F+G+L+ Sbjct: 525 YQFGTELAKSVVTGIARVKDDMCELLDR-----GFVRILAKQQAESPLRGKSFCFSGSLR 579 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL----GV--KIMNEEQ 713 R + LG VV ++R +I ++ AQ+L GV +I++E++ Sbjct: 580 NGDRATI-HRIRALGGVVRTSVTRDLSYLIF-ESLSQPYRTAQKLKKEQGVALEIISEDE 637 Query: 714 FLFLLQQYNTT 724 F LL Q + + Sbjct: 638 FCRLLDQASAS 648 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQ 703 + F+G L + R +A V +LG V +S + ++ D K + A + Sbjct: 745 PLHGMSFCFSGDLDGMTRAQAIALVQRLGGTVKTAVSTQLTYLVSNDPHGQSRKCQNAVR 804 Query: 704 LGVKIMNEEQFLFL 717 GV+I++E FL L Sbjct: 805 CGVRIISEHVFLAL 818 >gi|71042246|pdb|1ZAU|A Chain A, Adenylation Domain Of Nad+ Dependent Dna Ligase From M.Tuberculosis Length = 328 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 106/332 (31%), Positives = 168/332 (50%), Gaps = 13/332 (3%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P + + ++ +L +E+ H YY PII D+E+D L RR +A+ P+L Sbjct: 4 PDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL-- 61 Query: 68 SEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P+ P +GG V H LSL+ + ++L + RI+ Sbjct: 62 -RTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAH--- 117 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIP 182 + E KIDG +++ Y +G+ A+ RGDG +GEDV+ R I +P L +P Sbjct: 118 -YLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVP 176 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 E++EVRGEV+ +DF ALN ++ G+ P+ANPRN+A+G LR+ +P R L H Sbjct: 177 EVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICH 236 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 GLG ++ +R G PV+ A G+ + R + ++IDG Sbjct: 237 GLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDG 296 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333 +V KVDE +LQ++LG +R+PRW I++K+ + Sbjct: 297 VVVKVDEVALQRRLGSTSRAPRWAIAYKYPPE 328 >gi|153813748|ref|ZP_01966416.1| hypothetical protein RUMOBE_04182 [Ruminococcus obeum ATCC 29174] gi|149830168|gb|EDM85261.1| hypothetical protein RUMOBE_04182 [Ruminococcus obeum ATCC 29174] Length = 538 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 146/585 (24%), Positives = 252/585 (43%), Gaps = 59/585 (10%) Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +G E L K TH P LSL+K + + LR FI + L Sbjct: 11 DSPTVNVGYEAVDVLPKETHESPMLSLDKTKDRDVLRAFI------------GTHPTLLS 58 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG I + YE G+ + A RG+G GE ++ + IP L + + +RGE Sbjct: 59 WKMDGLTIVLTYENGELLKAVTRGNGTVGEVITNNAKVFKNIP--LKIAYRGRLVLRGEA 116 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRR-LNPTDITRYLNFFVHGLGKTSEIF 250 I+ +DF +ND + V Y NPRN SG +R+ N R + F+ L ++ Sbjct: 117 IITYSDFEKINDTIEDVD-AKYKNPRNLCSGSVRQLNNQITAERNVRFYAFALVSAQDVD 175 Query: 251 AKGQYEMLQ-KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + +R GF V + + DGLV D+ Sbjct: 176 MHNSRKYQMEWLRRQGFEVVEYRMVTGENLD--EAMDYFAHAIEKNDFPSDGLVALYDDI 233 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + + LG A+ PR + K+A++ T L +I+ RTG++ PVA +PV + G ++ Sbjct: 234 AYGESLGSTAKFPRNAFAFKWADEVRETTLREIEWSPSRTGLINPVAVFDPVELEGTTVS 293 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A++HN +K L + +GD + V +A +IP++ + + + Sbjct: 294 RASVHNVSIVKDLQ-----------LGIGDTIQVYKANMIIPQIAENLTR-----SSNLE 337 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C + C+A++++ FVSRDA NI+GL + Sbjct: 338 IPEICPACGQEARVIR-----ENDVEALYCMNPDCAAKKIKAFTLFVSRDAMNIDGLSEA 392 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ F I DIF +++ + +I + GFG+ S NL +SI K + Sbjct: 393 TLEKFIAK----GFIHNFGDIFEIEKFRD----EIVTMEGFGEKSYENLMNSIEKAEETT 444 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L + I+SLGI ++G A+ + +++ +++ + D + + +G +IA Sbjct: 445 LAKVIYSLGIANIGLSNAKVICRHFD---------DDLDKIRSADEEEISAIDGIGPVIA 495 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654 +++ +++ NP N V+ LLK + + + E + V Sbjct: 496 KSLTKYFSNPENNQKVDHLLKYLHIN--KEEISGEQIFAGMNFVI 538 >gi|126174865|ref|YP_001051014.1| DNA ligase (NAD(+)) [Shewanella baltica OS155] gi|166216240|sp|A3D5Y2|DNLJ_SHEB5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|125998070|gb|ABN62145.1| DNA ligase (NAD(+)) [Shewanella baltica OS155] Length = 648 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 153/723 (21%), Positives = 289/723 (39%), Gaps = 106/723 (14%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 K+ I I SI++ + L + + Y + P+I D YD+ + Sbjct: 24 KKLEIAISKESIDELSE--DELLALLKVTNALY-RSGFPVIEDILYDSFWNKFALNHPNH 80 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P + E E+ V LS +K ++ E+++K++ RI + ++ D Sbjct: 81 PFITSVET----------EVLNLGKTVALPQKMLSTDKAYSKEEIKKWLDRILKAAEELD 130 Query: 123 --DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 N I + PK+DG ++ G+ RGDG G+DVS + Sbjct: 131 IDTNEIEIRITPKLDGYAA---FDDGE--RLYTRGDGVKGQDVSRAFERGLKVV-----R 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV 240 E GE+ I+K F + + N RN + I+ N + Sbjct: 181 NSERGLGAGEIVINKAYFEKKLSQ-------YFENSRNIQAAIIAEKNVDERVLEAIKEG 233 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 + + M + ++ + +++ YD+D Sbjct: 234 ACVFHPFAVLPNWTGNYQDLM--------------------TDFDGIIEQVWNSVEYDVD 273 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G++ + + +++ +G + RW I+ K ++ A ++ + Q RTG +TPVA L P Sbjct: 274 GVILEATDTRIKEHMGANRKFHRWQIAFKINDEVAEVEVISVTPQTSRTGRVTPVAELVP 333 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 I GA+I+ T+H+ + +K + G V + R+G VIPK+ +I Sbjct: 334 TRISGAMISRVTVHHYNMVK-----------INGVGPGAIVQIVRSGLVIPKIEKVIKPV 382 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 P CP C+S ++ + + C C AQ L HF A Sbjct: 383 DP------QMPELCPSCKSHLLWESD--------HLVCPNKSDCPAQTENTLVHFFKTLA 428 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 N +G G + ++ ++ ++ L+ Q + GFG+ + NLYD Sbjct: 429 NN-DGFGPKNIEKLANLG-----VKHIHQMYDLKPHQF-------AMYGFGEKTSKNLYD 475 Query: 541 SINKRRNISL--ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 + +NI + RF+ + G+ +G L ++Y S + + + Sbjct: 476 QLQASKNIEIEDWRFLSAFGVSRLGGGNCEKLLQHY-SLRELFEAT----------VEDI 524 Query: 599 IRVPLVGDIIAQAIVEFYQN-PRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTG 656 + + A+AIV+ N V L +S + + E ++++S + K +VFTG Sbjct: 525 AELNGFARVSAEAIVKGLANIKEEFFKVYDLGFNLSITPKQSELESLASPLTGKIVVFTG 584 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715 + + +R +++ LGA V ++ T +I G G +K+ A++ GVK+++E+++L Sbjct: 585 KMLQGKRSDMEKHAKALGAKVGTSVTSNTTYLIAGLKVGETKINDAKEKGVKVLSEQEYL 644 Query: 716 FLL 718 L+ Sbjct: 645 DLI 647 >gi|332755050|gb|EGJ85415.1| DNA ligase domain protein [Shigella flexneri 4343-70] Length = 256 Score = 263 bits (671), Expect = 9e-68, Method: Composition-based stats. Identities = 81/257 (31%), Positives = 131/257 (50%), Gaps = 8/257 (3%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFP 267 L + + G Sbjct: 236 PDTHLGRLLQFKKWGCR 252 >gi|218678588|ref|ZP_03526485.1| NAD-dependent DNA ligase LigA [Rhizobium etli CIAT 894] Length = 264 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 114/265 (43%), Positives = 169/265 (63%), Gaps = 4/265 (1%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 + ++ L+IE+A EL L +EI++HD Y+ +P I D++YDALKRR DA+ F Sbjct: 2 STEGSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEVRF 61 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P+L R + P ++G +++ V H+ P LSL+ ++ ED++ F+ IYRF + Sbjct: 62 PELIRE---DSPSRRVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVASIYRFLGRLP 118 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 D SI FT EPKIDG ++IRYE G+ V AA RGDG +GE+V+A IR I IP L +P Sbjct: 119 DQSIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVP 178 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 ++E+RGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF + Sbjct: 179 AVVEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAY 238 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGF 266 G+ S++ A Q+ ++ LGF Sbjct: 239 AWGEMSDMPADTQFRHGADLQGLGF 263 >gi|323228068|gb|EGA12205.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 276 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 145/280 (51%), Gaps = 8/280 (2%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ +++ E F R+ K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEIPMLSLDNVFDEESFLAFNKRVQDRL--KSTENVIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290 L + + G PV++ V ++ ++ +Y+ ++ Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEK 275 >gi|227875717|ref|ZP_03993845.1| DNA ligase (NAD(+)) [Mobiluncus mulieris ATCC 35243] gi|269976734|ref|ZP_06183710.1| DNA ligase, NAD-dependent [Mobiluncus mulieris 28-1] gi|227843659|gb|EEJ53840.1| DNA ligase (NAD(+)) [Mobiluncus mulieris ATCC 35243] gi|269935099|gb|EEZ91657.1| DNA ligase, NAD-dependent [Mobiluncus mulieris 28-1] Length = 917 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 173/774 (22%), Positives = 294/774 (37%), Gaps = 172/774 (22%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI------ILDSEYDALKRR 54 M+K++ IP Q + E L +I YY P + D++YDAL R Sbjct: 1 MRKKREIPP------QIQNEHQELVAQIEAARADYY--DNPDEHGVTRLSDADYDALFVR 52 Query: 55 CDAIAHAFPDLARSEDPNGPLNKI---------------------GGE----------MN 83 + ++P L P+ P + G Sbjct: 53 LQLLEGSYPALV---TPDSPTQTVGGGAGGGGGVKRAAAATTEAVGAAHVPENAVAVATT 109 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 TH+ S++ +++ ++ + R+ + + K + E K+DG +++ Y Sbjct: 110 EGFPPHTHAKRMQSIDDVFSTAEVDAWWERVEKGLEGK---PFTVSAEVKVDGLAMSLTY 166 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALN 202 G+ + A RGDG GEDV+A +R I T+P+ L IP ++E+RGEVY+ DF +N Sbjct: 167 VDGQLMTGATRGDGRVGEDVTANVRTIKTVPQTLGGTVIPHLVEIRGEVYLPLEDFAQMN 226 Query: 203 DEMIAVG--------------------RKPYANPRNAASGILRRLNPTDITRYL-NFFVH 241 E A +ANPRNAA+G L++ + + + F H Sbjct: 227 AEREANNAAWEAARAAGDKEKLKTLKKMPLFANPRNAATGSLKQKDSIEAAKRPLAFLAH 286 Query: 242 GLGKTSEI-----FAKGQYEMLQKMRCLGFPVNN--------GVRQANTFHGIVSYYNEM 288 GLG Q + +++ G P + T + + M Sbjct: 287 GLGAVQGWPDGVSPMATQEDFYRQLEVWGIPSVRRTPQSLGLRMAGLTTLTQVHAVLAAM 346 Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348 R + IDG+V KVD + + LG AR+PRW ++KF ++ TRLL I++Q+GR Sbjct: 347 TEHRHDFSHQIDGVVLKVDNLAARVLLGSTARAPRWACAYKFPPEEVHTRLLGIEVQVGR 406 Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408 TG +TP A +E V + G+ ++ ATLHN + +D+R GD V++++AG+ Sbjct: 407 TGRVTPFAVMERVLVDGSYVSRATLHNAKEVAR-----------KDVRPGDTVVLRKAGD 455 Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 +IP+V+ +++ R + P CP C +R+ ++ + RC C AQ Sbjct: 456 IIPEVLGPVLSLRPGGLPEWVMPEMCPSCGTRLGQE-----KEGDIDLRCPNQAGCPAQI 510 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSED----------------------------- 499 ERL H +R A +IEGLG++ + E Sbjct: 511 TERLIHVGARGALDIEGLGEEGALALTQPEAGRADVAAALSAGGSCMLEDGTEIRVPAGK 570 Query: 500 --------------PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS-INK 544 +R A +F L+ + + G + Sbjct: 571 PLELGAIESLLPPTQEPVLRSEAGLFDLKSKDLRDVFVWREVPGTAGRDWQQVRFFWAKP 630 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL------ 598 +R + E F L +G +A + + + A+ L Sbjct: 631 KRVTAAEAATFGLVAGELGEPVAGKTVETFFNQLAAARSKETWRVLVALSIRHLGPVAAR 690 Query: 599 --------------IRVPL------VGDIIAQAIVEFYQNPRNICAVEALLKEV 632 V VG +IA ++V++++ P + V A + Sbjct: 691 AVARRFPTLAAVAAADVEGLSQVEGVGAVIAASVVDWFRVPWHQEIVLAWTQAG 744 Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 41/81 (50%) Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 + + LV TG + R AQ V G + +S+KT +++ G GSKL Sbjct: 832 WEEPEQTLAGLTLVITGNIPGFTRESAQLAVEDRGGKATGSVSKKTSVVVAGTGAGSKLA 891 Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720 KA+ LG+ ++ E+F LL++ Sbjct: 892 KAEALGIPVIPAEEFPALLER 912 >gi|302562478|ref|ZP_07314820.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000] gi|302480096|gb|EFL43189.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000] Length = 533 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 167/559 (29%), Positives = 257/559 (45%), Gaps = 54/559 (9%) Query: 30 YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89 YY + D YD L R PD P P K+ G V Sbjct: 17 RAAAAYYGGGTSALDDDAYDRLVRGIADWEAEHPDAIL---PGSPTGKVAGGAVEG--DV 71 Query: 90 THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149 H++P LSL+ +++ E+ + + R ++ F++ PK+DG + RY G+ Sbjct: 72 PHTVPMLSLDNVFSAEEFTAWTASLARRIG---HDAARFSVGPKLDGLAVAARYSDGRLT 128 Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209 RGDG +GEDVS I + +P L + +EVRGEV ++ F N+ A G Sbjct: 129 RLITRGDGTAGEDVSHAIGTVEGLPEKLEEPV--TVEVRGEVLMTTAQFEHANEVRTAHG 186 Query: 210 RKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK--------GQYEMLQKM 261 +P+ANPRNAA+G LR + FF +GL E++ Sbjct: 187 GQPFANPRNAAAGTLRARDRVYTVPMT-FFGYGLLPLPGTDPALAGRLDDLPHSELMALA 245 Query: 262 RCLGFPVNNGVR----QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 R LG + A T +++ E+ + R+ LP+ IDG+V K D Q+ G Sbjct: 246 RDLGVHTSARTAVPDVVAGTVEEVLARVKEIAAARAELPFGIDGIVIKADLAEEQRAAGS 305 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +R+PRW I++K + TRLL+++ +GRTGI+ P LEPV I G+ IT ATLHN Sbjct: 306 GSRAPRWAIAYKLPAVEKITRLLEVEWNVGRTGIIAPRGVLEPVVIDGSTITYATLHNPA 365 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I RD+R+GD V+V RAG+VIP++ + + R + QP FP+ CP C Sbjct: 366 DITR-----------RDLRLGDHVMVHRAGDVIPRIEAPVAHLRTGEEQPIVFPAQCPRC 414 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S + D + + C + L + RD +IEGLG ++ Sbjct: 415 GSDI--DTGEERWRCAQGRNC--------HLVASLAYAAGRDQLDIEGLGATRVVQLVD- 463 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + AD+F L+R Q + + G+ S NL ++ K + L R + +L Sbjct: 464 ---AGLVADLADLFALRREQ------LLALERMGETSTDNLLAALAKAKEQPLSRVLCAL 514 Query: 558 GIRHVGAEIARSLAKYYLS 576 G+R G ++R +A+Y+ + Sbjct: 515 GVRGTGRSMSRRIARYFAT 533 >gi|221134260|ref|ZP_03560565.1| DNA ligase (NAD(+)) [Glaciecola sp. HTCC2999] Length = 643 Score = 260 bits (664), Expect = 7e-67, Method: Composition-based stats. Identities = 146/705 (20%), Positives = 261/705 (37%), Gaps = 106/705 (15%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDA-LKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 L + + CY + P++ D+ YD L A P L K+ Sbjct: 36 EQLIAVLEATNACY-RAGFPLVEDAFYDHHLLSALQAREPDHPFLL----------KVEP 84 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK--DDNSIFFTLEPKIDGTM 138 E+ +T LS +K ++I ++ K++TRI + + + + + PK+DG Sbjct: 85 EIVSG-KTITLPQKMLSTDKAYSITEIEKWVTRIKKAADELSIPHSDVNIRITPKLDGYA 143 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 Y+ G RGDG G+D++ + N E GE+ ISK F Sbjct: 144 A---YDDGN--TLYTRGDGVRGQDITRAFTRGLAVA-----NQGERGLGPGEIVISKQYF 193 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 + + N RN + I+ + + + Sbjct: 194 DTFLSDQ-------FENSRNIQAAIIAEKKIEPSVVKAIQDEACVFYPFALLPNWTGLID 246 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ I + YDIDG++ + ++ LG Sbjct: 247 VLAED--------------------VEARIEPIWQAVDYDIDGVILETTHPDIKAHLGAT 286 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 RW I+ K ++ A +L + Q RTG ++PVA L P + GA I+ AT+H+ + Sbjct: 287 RHHHRWQIAFKVNDESAEVEVLSVTPQTSRTGRVSPVAELVPTKLSGATISRATVHHYNM 346 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 ++ + G V + R+G VIPK+ +I P CP C Sbjct: 347 VQS-----------NGVGPGAIVQLVRSGLVIPKIEKVITAVTP------QLPDACPSCH 389 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S ++ + + C C AQ+ L HF N +G G + ++ ++ Sbjct: 390 SHLIWEAD--------HLICPNKNDCPAQRENTLVHFFK-TLGNNDGFGPKVVEKLCQNG 440 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN--ISLERFIFS 556 ++ DI+ L + GFG+ + NL + +N R+ I RF+ + Sbjct: 441 -----VKHIHDIYALGPVDLMAW-------GFGEKTALNLVEQLNVSRSVAIEDWRFLAA 488 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 GI +G L ++ + +++ + + A+AIVE Sbjct: 489 FGITRLGGGNGEKLLQH-HTLSELFDLT----------VDAMVEIDGFAQLSAEAIVEGL 537 Query: 617 QN-PRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 N V L + + + K++VFTG++ R +++ LG Sbjct: 538 ANVKTEFFKVYELGFNLIVTPKLSESDLADTVLFGKQVVFTGSMTSGSRSDMEKHAKTLG 597 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 A V +S T +I GD G +K+ A+ GV ++ E ++L ++ Sbjct: 598 AKVGKSVSGNTTYLITGDKVGANKINAARDKGVTVLTELEYLAMI 642 >gi|307826049|ref|ZP_07656262.1| DNA ligase (NAD(+)) [Methylobacter tundripaludum SV96] gi|307732888|gb|EFO03752.1| DNA ligase (NAD(+)) [Methylobacter tundripaludum SV96] Length = 654 Score = 260 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 151/708 (21%), Positives = 273/708 (38%), Gaps = 106/708 (14%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 L + + + Y + +P I D++YD + + P E + E Sbjct: 42 EQLLEFLQVCNALY-RGGEPFISDADYDFVF--LAELQKRHPHHPYLET-------VEPE 91 Query: 82 MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK--KDDNSIFFTLEPKIDGTMI 139 + VT P LS EK ++ + K+++R+ + D +++ PK+DG Sbjct: 92 VVAVGKTVTLPEPMLSTEKTYSQSGIEKWLSRLEKAADDCDVDFSTLMIRATPKLDGYAA 151 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 Y+ GK RGDG G D+S + + + GE+ +S+ F Sbjct: 152 ---YDDGKL--LYTRGDGRKGTDISRVFERGLKV-----GGNGKRGQGAGEIVVSQTYFN 201 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259 + + N RN + I++ + + + + Sbjct: 202 NHLAD-------YFENSRNFQASIIKEKDLEQHALEAIQNHAAVFFPFSQLPDWKGTAAE 254 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDEFSLQKQLGER 318 + + YD+DG+V++ V ++K LG Sbjct: 255 VLADFDQVIEKVYSLV--------------------DYDVDGVVFELVGNEQIKKYLGAT 294 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 RW I++K + A ++ + Q R+G + PVA L P + GA+I+ AT H+ Sbjct: 295 RHHHRWQIAYKSNVETAEVIVIKVTPQTSRSGRVNPVAELTPTKLSGAVISRATAHHYGM 354 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 +K L I VG + + R+G VIPK+ +I+ + P CP C Sbjct: 355 VKEL-----------GIGVGTLIELTRSGLVIPKIERVIIPKEP------QIPEHCPSCG 397 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S +V D + C C AQ ++HF R N++G G++ ++ Sbjct: 398 SELVWDSD--------YLYCLNTTKCPAQIENTIEHFF-RTLANVDGFGQKTVEKLHACG 448 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI--SLERFIFS 556 I ++ L Q GFGD + NL D + + R+ RF+ + Sbjct: 449 -----INSVYAVYQLDMEQLQDM-------GFGDKTAQNLMDQLQRSRSESIEDWRFLGA 496 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 GI +G L +++ F +I + + + A+VE Sbjct: 497 FGIHRMGLGNCERLLQHHHLMDIF-----------KLTVEDVINIEGFAEKTSAAVVECL 545 Query: 617 QN-PRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + + L + +P I ++N+ S I K +VFTG + +R + +L Sbjct: 546 AKIKTDFMQIHQLGFNLIQTPLIAEQQQNI-SPISGKTIVFTGAMIHGKRDDMSKEAKRL 604 Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 GA V + ++ KTD ++ G + G +K+ A + GV++++EE +L LL + Sbjct: 605 GAKVGSSVTGKTDFLVTGSDVGAAKIAAATEKGVRVISEEDYLALLGR 652 >gi|153217073|ref|ZP_01950837.1| DNA ligase [Vibrio cholerae 1587] gi|124113903|gb|EAY32723.1| DNA ligase [Vibrio cholerae 1587] Length = 324 Score = 260 bits (663), Expect = 9e-67, Method: Composition-based stats. Identities = 120/361 (33%), Positives = 196/361 (54%), Gaps = 39/361 (10%) Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 + +GG ++NATLHN D I+ L + VGD V+++RAG+VIP++V +++ Sbjct: 1 MFVGGVTVSNATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLER 49 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R +A+ FP+ CP+CQS V R A RC+GGL C AQ+ E LKHFVSR A Sbjct: 50 RPENAKSIVFPTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKA 103 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 ++EGLG + ++ E + PAD+F L+ ++ + G S N+ D Sbjct: 104 MDVEGLGDKVIEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVID 153 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 ++NK + +L +F+++LGIR VG A +LA+++LS + Q I Sbjct: 154 ALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIE 203 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTL 658 VP VG ++A + F+ RN + LL++ P++ V S + K +V TG+ Sbjct: 204 VPDVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSF 263 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++ R+ A+ + LGA V+ +S+ TDI+ G+ GSKL KA +LG+++ +E+ + L Sbjct: 264 TQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFL 323 Query: 719 Q 719 + Sbjct: 324 K 324 >gi|68171542|ref|ZP_00544921.1| DNA ligase (NAD+) [Ehrlichia chaffeensis str. Sapulpa] gi|67999047|gb|EAM85719.1| DNA ligase (NAD+) [Ehrlichia chaffeensis str. Sapulpa] Length = 366 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 153/388 (39%), Positives = 229/388 (59%), Gaps = 32/388 (8%) Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 +A T+L I IQIGRTG+LTP+A L P+NIGG ++T A+LHN++ I+ Sbjct: 1 AAEAKTQLNKISIQIGRTGVLTPIAELSPINIGGVIVTRASLHNKNEIER---------- 50 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR GD V+VKRAG+VIP++VD+ N R + F FP+ CP C S V + Sbjct: 51 -KDIREGDYVIVKRAGDVIPQIVDVDKNLRTQELTKFVFPTTCPSCGSSVYQAKQE---- 105 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A+ CTG L C Q LE++KHFVS+DAFNI G GK+QL FF++ I DIF Sbjct: 106 --ASIYCTGELFCKDQILEKIKHFVSKDAFNIIGFGKKQLLFFYEQR----LITNITDIF 159 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 TL+ + S K+E++ G+G+ S++NL+ +IN + ISLE FIF+LGIR +G IA+ LA Sbjct: 160 TLEEKISNSDVKLESLHGWGEKSMSNLFSAINNSKVISLENFIFALGIRFIGKYIAKILA 219 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 ++ SY+ + E+ + + + + + +G ++ F+ P N+ + L+K Sbjct: 220 NHFSSYETWYNEMLKLAQNEDYS----LNIQQIGSKTIGSLKMFFSQPHNLNMINDLVKH 275 Query: 632 VSPSIGRHEKNVSSEIE---NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 ++ + SS + K +VFTG L + R +A+ GA VS+ LS+ TD + Sbjct: 276 LTI----TDTQSSSYLSLIHGKIIVFTGELSSMSRSEAKIRSETAGAKVSSSLSKNTDFL 331 Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 I G+NPGSK +KAQ L V+I+ E+ +L Sbjct: 332 IAGNNPGSKYKKAQSLNVQILTEDLWLQ 359 >gi|168017901|ref|XP_001761485.1| predicted protein [Physcomitrella patens subsp. patens] gi|162687169|gb|EDQ73553.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1163 Score = 258 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 155/689 (22%), Positives = 277/689 (40%), Gaps = 55/689 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + +L + I+ + Y+ P+I DS YDAL R + P Sbjct: 315 DILDRVETLRRVIADYSYQYHTLGNPLISDSAYDALVRELKDLESKLP---AEASEESVT 371 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF----FTLE 131 K+G L + KV H++P LSL ++ ++L+ + R+ + + + + +E Sbjct: 372 AKVGAPPPLEIAKVRHAVPMLSLAAVYKEDELKAWHERLQQRLNRMSNGEQPSTGAWVVE 431 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE------II 185 PK+DG +T+ YE+GK V AA RGDG GEDV+ R + +P VLS + E ++ Sbjct: 432 PKVDGIALTLLYERGKLVCAATRGDGAEGEDVTHNARNLKGVPEVLSDHHKEINLQESVL 491 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL- 243 EVRGEVY++ DF LND + G KP+ANPRNA +G +R L D R L+F + + Sbjct: 492 EVRGEVYMTLLDFQELNDMKVKGGEKPFANPRNATAGSMRILKNRDGDDRRLSFMAYAIL 551 Query: 244 ---------GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 +T + Q++ L ++ L F VN+ R+ +F + Y + RST Sbjct: 552 SPEDNVSAGVETPPRLVRAQWDALNLLKQLDFSVNDDNRKFASFDDALHYATRWRDSRST 611 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L Y+ DG+V+K+++ + Q +LG PRW ++ KFA + T L I++ IGR+G + P Sbjct: 612 LKYESDGVVFKINDLATQAKLGVVGSDPRWAVAWKFAATEVVTILEGIELSIGRSGAIIP 671 Query: 355 VARLEPVNIGGALITNATLHNEDYI---------KGLDASGKVMRGGRDIR--VGDRVLV 403 ARL+ + + + N ++ + L ++ D V Sbjct: 672 NARLKDITVSSSSDGCPLHFNPKFMFESENVAYSQLLSLYYVQCSWDDELCSLEVDVYQV 731 Query: 404 KRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463 + + + ++ D F P + + + +P+ C G Sbjct: 732 VPHNQESSRTLGCLI-----DHITFLVPYLSRFACNEYLSNFSPEDRIWF--LTCNGWWK 784 Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR-QQTSTT 522 E + F ++ + + K P + + R + Sbjct: 785 NWESVKETMLLFNEQEMSYLRPINTYFAVLLSKFLVSFTCHFSPCQVVQVLRELRSDHMH 844 Query: 523 KIENILGFGDVSVTNL--YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580 + D+ + S I+H + + L LS Sbjct: 845 SWVPPDRCPFCNGELTVSKDNNITSCCNNKCPGRHSRKIKHFAKTLFKGLGPSILSDLEE 904 Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 A + + D +SL R+ +G+ A +V+ + + E + PS+G Sbjct: 905 AGMVVDPADFYALDVVSLSRLDGLGEKSAAKLVKAIEESKGKALWELITALGIPSVGVTA 964 Query: 641 KNVSSEIENKKLVFTGTLQKI---QRHKA 666 + + G+++++ R + Sbjct: 965 AKLLEQWF-------GSMERLLVASREEL 986 Score = 147 bits (370), Expect = 8e-33, Method: Composition-based stats. Identities = 79/382 (20%), Positives = 135/382 (35%), Gaps = 70/382 (18%) Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK-VVDIIVNERHPDAQPFSFP 431 L NE + L + + LV P VV ++ R + P Sbjct: 795 LFNEQEMSYLRPINTYFAV-----LLSKFLVSFTCHFSPCQVVQVLRELRSDHMHSWVPP 849 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + + C C + ++KHF L K Sbjct: 850 DRCPFCNGELTVSKDNN------ITSCCNNK-CPGRHSRKIKHFAK-------TLFKGLG 895 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + A + PAD + L + + G G+ S L +I + + +L Sbjct: 896 PSILSDLEEAGMVVDPADFYAL------DVVSLSRLDGLGEKSAAKLVKAIEESKGKALW 949 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 I +LGI VG A+ L +++ S + L+ VP +G + A A Sbjct: 950 ELITALGIPSVGVTAAKLLEQWFGSMERLLVA----------SREELLLVPGIGTVSASA 999 Query: 612 IVEFYQNPRNICAVEALLKEV------SPSIGRHEK------------------------ 641 I ++ +P N+ V ++ + P I H Sbjct: 1000 IHDWCTDPFNVQLVSSIKEAGFSPTFNDPEIENHAAGNALSDSASQTTTSKVRTTDSEES 1059 Query: 642 --NVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SK 697 NV + ++ K +V TG ++ R + ++ V G + ++ KT I+ G +PG SK Sbjct: 1060 KGNVETPRLQGKNVVVTGEFEEYSREQIEQLVVLNGGQLRKSVNSKTSFIVAGQSPGPSK 1119 Query: 698 LEKAQQLGVKIMNEEQFLFLLQ 719 + KA QL V +++ F LL+ Sbjct: 1120 MTKAAQLAVPVLDISSFQQLLE 1141 >gi|254229733|ref|ZP_04923142.1| DNA ligase [Vibrio sp. Ex25] gi|151937778|gb|EDN56627.1| DNA ligase [Vibrio sp. Ex25] Length = 287 Score = 257 bits (657), Expect = 4e-66, Method: Composition-based stats. Identities = 83/254 (32%), Positives = 126/254 (49%), Gaps = 8/254 (3%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 +S E + L L++ + YH YY P I D+EYD L R I PDL Sbjct: 20 TMS-ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITV-- 76 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++GG+ + +VTH +P LSL+ ++ +L F R + + Sbjct: 77 -DSPSQRVGGQPLSAFSQVTHEVPMLSLDNAFDDSELDSFHKRAQERVGSQSVK--EYCC 133 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189 EPK+DG +++ YE G V AA RGDG +GE+++ +R I IP L N P +EVRG Sbjct: 134 EPKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLKLRGNDWPNRLEVRG 193 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE 248 EV++ K F LN+ G K + N RNAA+G LR+L+ +R L+F+ + G+ + Sbjct: 194 EVFMPKAGFEKLNELARKKGEKIFVNXRNAAAGSLRQLDSRITASRPLSFYAYSGGRGCK 253 Query: 249 IFAKGQYEMLQKMR 262 Q + Sbjct: 254 ALNWRQVTTNASCK 267 >gi|281307118|pdb|3JSL|A Chain A, Crystal Structure Of The Adenylation Domain Of Nad+- Dependent Dna Ligase From Staphylococcus Aureus gi|281307119|pdb|3JSL|B Chain B, Crystal Structure Of The Adenylation Domain Of Nad+- Dependent Dna Ligase From Staphylococcus Aureus gi|281307120|pdb|3JSN|A Chain A, Crystal Structure Of The Adenylation Domain Of Nad+- Dependent Dna Ligase From Staphylococcus Aureus Length = 318 Score = 257 bits (655), Expect = 7e-66, Method: Composition-based stats. Identities = 108/322 (33%), Positives = 168/322 (52%), Gaps = 11/322 (3%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++ L ++ + YY P + DSEYD L I P+ + Sbjct: 1 MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N +DLRKF RI ++ + E K Sbjct: 58 PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++Y G FV RGDG +GED++ ++ I IP + + +EVRGE Y+ Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLN--VEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + FL LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L ++ LGF N + N G++ Y + S R +LPYDIDG+V KV++ Q Sbjct: 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQ 334 ++G +SPRW I++KF ++ Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEE 312 >gi|119945995|ref|YP_943675.1| DNA ligase (NAD(+)) [Psychromonas ingrahamii 37] gi|166216251|sp|A1SX61|DNLJ_PSYIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|119864599|gb|ABM04076.1| DNA ligase (NAD(+)) [Psychromonas ingrahamii 37] Length = 649 Score = 256 bits (654), Expect = 9e-66, Method: Composition-based stats. Identities = 151/696 (21%), Positives = 277/696 (39%), Gaps = 103/696 (14%) Query: 33 DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHS 92 + +Y+ ++ II DS YDA P L + E+ V Sbjct: 50 NAFYRSAEQIINDSTYDAFLSEFSTYNPDHPYLLT----------VEPEVLADSKTVPLP 99 Query: 93 IPTLSLEKIWNIEDLRKFITRIYRFWQKKD--DNSIFFTLEPKIDGTMITIRYEKGKFVY 150 LS +K ++ E+++K+I R+ + + ++ I + PK+DG Y+ G + Sbjct: 100 KKMLSTDKAYSFEEIKKWIDRLLKAAIEVGVSESEIQIKVTPKLDGYAA---YDDG--IS 154 Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210 RGDG G+D++ + + GE+ I K+ F + + Sbjct: 155 LYTRGDGARGQDITRAFNKGLQVANNGDRGLGP-----GEIVIKKSYFDTVLSD------ 203 Query: 211 KPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN 270 + N RN + I+ + + +G + + + Sbjct: 204 -KFENSRNIQAAIIAEKKVDESIQ----KAIDVGACVFFPFLSLENWIGHYTEILVDFES 258 Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 V + + S + YDIDG+V +V +L++ +G RW I+ K Sbjct: 259 IVEK----------------MWSAVDYDIDGVVLEVTNETLKEHMGATRHHHRWQIAFKV 302 Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390 + A ++L++ Q RTG +TPVA LEP + GA I+ AT+H+ + +K Sbjct: 303 NAESAEVKVLNVTPQTSRTGRVTPVAELEPTKLSGATISRATVHHYNMVK---------- 352 Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450 + G V + R+G VIPK+ +I A CP C + ++ + + Sbjct: 353 -TNGVGPGAIVQLVRSGLVIPKIEKVI------KAVEPQLAKECPSCGTHLIWESD---- 401 Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510 C C AQ L HF N +G G + ++ + I+ +I Sbjct: 402 ----HLVCPNKTDCPAQTENTLVHFFK-TLGNNDGFGPKVIEKLHEFG-----IKKIHEI 451 Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN--ISLERFIFSLGIRHVGAEIAR 568 + L++ S GFGD + NL + + R+ I RF+ + G+ + Sbjct: 452 YELKQESFVSF-------GFGDKTAQNLVEQLQVSRDVEIEDWRFLAAFGVSRLAGGNCE 504 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN-PRNICAVEA 627 L ++ S + + L+++ + A AIVE N + A Sbjct: 505 KLLQH-HSLDSLFEAT----------VEDLVQLDGFAQVSADAIVEGLANIKEEFLKLSA 553 Query: 628 LLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 L ++ + EK+ + + K +VFTG + + R ++ LGA V+ ++ KT Sbjct: 554 LNFNLTITPKASEKSPGETPVFGKIIVFTGAMTQGSRGDMEKQAKALGAKVAKSVTGKTS 613 Query: 687 IIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQY 721 +++ GD G +K+ A+ GV++++E +L L+ Y Sbjct: 614 LLVTGDKVGANKINAARDKGVQVLSELDYLALISTY 649 >gi|145627933|ref|ZP_01783734.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.1-21] gi|145640788|ref|ZP_01796371.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021] gi|144979708|gb|EDJ89367.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.1-21] gi|145274714|gb|EDK14577.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.4-21] Length = 278 Score = 254 bits (648), Expect = 4e-65, Method: Composition-based stats. Identities = 83/270 (30%), Positives = 136/270 (50%), Gaps = 7/270 (2%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S + Sbjct: 1 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ ++ + F+ RI + F EPK Sbjct: 58 PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I Y G+ AA RGDG +GED++A IR I +P ++L+ N P +EVRGEV+ Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250 + F LN + K +ANPRNAA+G LR+L+P ++ +G+G + Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHG 280 Y LQ ++ +G PVN +R N Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADE 266 >gi|309800538|ref|ZP_07694688.1| DNA ligase [Streptococcus infantis SK1302] gi|308115831|gb|EFO53357.1| DNA ligase [Streptococcus infantis SK1302] Length = 315 Score = 253 bits (647), Expect = 5e-65, Method: Composition-based stats. Identities = 99/324 (30%), Positives = 167/324 (51%), Gaps = 11/324 (3%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L + ++ + YY P + DSEYD L R + A PD P P +++ Sbjct: 3 ERMKELVELLNRYATEYYTSDNPSVSDSEYDRLYRELVELEKARPDQVL---PESPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ K +H P SL+ ++ E+L F R+ + + + + E KIDG Sbjct: 60 GGKILDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEL-----DDVTYICELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YE+G FV A RGDG GE+++ ++ + IP L + I VRGE Y+ + F Sbjct: 115 ISLTYEQGIFVAGATRGDGSIGENITENLKRVKDIPLSLPEKL--DITVRGECYMPRVSF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ + N + S Q ++L Sbjct: 173 DQVNQSRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKVL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + LGF VN A++ + ++ E+ R LPYDIDG+V K+++ + Q+QLG Sbjct: 232 KHLEQLGFVVNQRRLLAHSMDEVWTFIQEIGRERDQLPYDIDGVVIKINDLAGQEQLGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDI 342 ++P+W +++KF ++ +LL + Sbjct: 292 VKAPKWAVAYKFPAEEKEAKLLSV 315 >gi|306818992|ref|ZP_07452709.1| NAD-dependent DNA ligase LigA [Mobiluncus mulieris ATCC 35239] gi|304648185|gb|EFM45493.1| NAD-dependent DNA ligase LigA [Mobiluncus mulieris ATCC 35239] Length = 917 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 151/570 (26%), Positives = 249/570 (43%), Gaps = 102/570 (17%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI------ILDSEYDALKRR 54 M+K++ IP Q + E L +I YY P + D++YDAL R Sbjct: 1 MRKKREIPP------QIQNEHQELVAQIEAARADYY--DNPDEHGVTRLSDADYDALFVR 52 Query: 55 CDAIAHAFPDLARSEDPNGPLNKI---------------------GGE----------MN 83 + ++P L P+ P + G Sbjct: 53 LQLLEGSYPALV---TPDSPTQTVGGGAGGGGGVKRAAAATTEAVGAAHVPENTVAVATT 109 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 TH+ S++ +++ ++ + R+ + + K + E K+DG +++ Y Sbjct: 110 EGFPPHTHAKRMQSIDDVFSTAEVDAWWERVEKGLEGK---PFTVSAEVKVDGLAMSLTY 166 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALN 202 G+ + A RGDG GEDV+A +R I T+P+ L IP ++E+RGEVY+ DF +N Sbjct: 167 VDGQLMTGATRGDGRVGEDVTANVRTIKTVPQTLGGTVIPHLVEIRGEVYLPLEDFAQMN 226 Query: 203 DEMIAVG--------------------RKPYANPRNAASGILRRLNPTDITRYL-NFFVH 241 E A +ANPRNAA+G L++ + + + F H Sbjct: 227 AEREANNAAWEAARAAGDKEKLKTLKKMPLFANPRNAATGSLKQKDSIEAAKRPLAFLAH 286 Query: 242 GLGKTSEI-----FAKGQYEMLQKMRCLGFPVNN--------GVRQANTFHGIVSYYNEM 288 GLG Q + +++ G P + T + + M Sbjct: 287 GLGAVQGWPDGVSPMATQEDFYRQLEVWGIPSVRRTPQSLGLRMAGLTTLTQVHAVLAAM 346 Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348 R + IDG+V KVD + + LG AR+PRW ++KF ++ TRLL I++Q+GR Sbjct: 347 TEHRHDFSHQIDGVVLKVDNLAARVLLGSTARAPRWACAYKFPPEEVHTRLLGIEVQVGR 406 Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408 TG +TP A +E V + G+ ++ ATLHN + +D+R GD V++++AG+ Sbjct: 407 TGRVTPFAVMERVLVDGSYVSRATLHNAKEVAR-----------KDVRPGDTVVLRKAGD 455 Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 +IP+V+ +++ R + P CP C +R+ ++ + RC C AQ Sbjct: 456 IIPEVLGPVLSLRPRGLPEWVMPEMCPSCGTRLGQE-----KEGDIDLRCPNQAGCPAQI 510 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 ERL H +R A +IEGLG++ + E Sbjct: 511 TERLIHVGARGALDIEGLGEEGALALTQPE 540 Score = 122 bits (305), Expect = 3e-25, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 41/81 (50%) Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 + + LV TG + R AQ V G + +S+KT +++ G GSKL Sbjct: 832 WEEPEQTLAGLTLVITGIIPGFTRESAQLAVEDRGGKATGSVSKKTSVVVAGTGAGSKLA 891 Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720 KA+ LG+ ++ E+F LL++ Sbjct: 892 KAEALGIPVIPAEEFPALLER 912 Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 82/281 (29%), Gaps = 14/281 (4%) Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR--VLVKRAGEVIPK 412 E G + + D A R I VG R + ++ GE Sbjct: 475 WVMPEMCPSCGTRLGQEKEGDIDLRCPNQAGCPAQITERLIHVGARGALDIEGLGEEGAL 534 Query: 413 VVDIIVNERHPDAQPFSFPSFCP-ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 + R A S C + + + Sbjct: 535 ALTQPEAGRADVAAALSAGGSCMLEDGTEIRVPAGKPLELGAIESLLPPTQEPVLRSEAG 594 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L S+D ++ + + F P T E Sbjct: 595 LFDLKSKDLRDVFVWREVPGTAGRDWQQVRFFWAKP-KRVTAAEAATFGLVAGELGEPVA 653 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 +V ++ + R+ R + +L IRH+G AR++A+ + + A Sbjct: 654 GKTVETFFNQLAAARSKETWRVLVALSIRHLGPVAARAVARKFPTL----------AAVA 703 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632 D L +V VG +IA ++V++++ P + V A + Sbjct: 704 AADVEDLSQVEGVGTVIAASVVDWFRVPWHQEIVLAWTQAG 744 >gi|307700359|ref|ZP_07637399.1| DNA ligase (NAD+) [Mobiluncus mulieris FB024-16] gi|307614570|gb|EFN93799.1| DNA ligase (NAD+) [Mobiluncus mulieris FB024-16] Length = 917 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 151/570 (26%), Positives = 249/570 (43%), Gaps = 102/570 (17%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI------ILDSEYDALKRR 54 M+K++ IP Q + E L +I YY P + D++YDAL R Sbjct: 1 MRKKREIPP------QIQNEHQELVAQIEAARADYY--DNPDEHGVTRLSDADYDALFVR 52 Query: 55 CDAIAHAFPDLARSEDPNGPLNKI---------------------GGE----------MN 83 + ++P L P+ P + G Sbjct: 53 LQLLEGSYPALV---TPDSPTQTVGGGAGGGGGVKRAAAATTEAVGAAHVPENAVAVATT 109 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 TH+ S++ +++ ++ + R+ + + K + E K+DG +++ Y Sbjct: 110 EGFPPHTHAKRMQSIDDVFSTAEVDAWWERVEKGLEGK---PFTVSAEVKVDGLAMSLTY 166 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALN 202 G+ + A RGDG GEDV+A +R I T+P+ L IP ++E+RGEVY+ DF +N Sbjct: 167 VDGQLMTGATRGDGRVGEDVTANVRTIKTVPQTLGGTVIPHLVEIRGEVYLPLEDFAQMN 226 Query: 203 DEMIAVG--------------------RKPYANPRNAASGILRRLNPTDITRYL-NFFVH 241 E A +ANPRNAA+G L++ + + + F H Sbjct: 227 AEREANNAAWEAARAAGDKEKLKTLKKMPLFANPRNAATGSLKQKDSIEAAKRPLAFLAH 286 Query: 242 GLGKTSEI-----FAKGQYEMLQKMRCLGFPVNN--------GVRQANTFHGIVSYYNEM 288 GLG Q + +++ G P + T + + M Sbjct: 287 GLGAVQGWPDGVSPMATQEDFYRQLEVWGIPSVRRTPQSLGLRMAGLTTLTQVHAVLAAM 346 Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348 R + IDG+V KVD + + LG AR+PRW ++KF ++ TRLL I++Q+GR Sbjct: 347 TEHRHDFSHQIDGVVLKVDNLAARALLGSTARAPRWACAYKFPPEEVHTRLLGIEVQVGR 406 Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408 TG +TP A +E V + G+ ++ ATLHN + +D+R GD V++++AG+ Sbjct: 407 TGRVTPFAVMERVLVDGSYVSRATLHNAKEVAR-----------KDVRPGDTVVLRKAGD 455 Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 +IP+V+ +++ R + P CP C +R+ ++ + RC C AQ Sbjct: 456 IIPEVLGPVLSLRPRGLPEWVMPEMCPSCGTRLGQE-----KEGDIDLRCPNQAGCPAQI 510 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 ERL H +R A +IEGLG++ + E Sbjct: 511 TERLIHVGARGALDIEGLGEEGALALTQPE 540 Score = 120 bits (301), Expect = 7e-25, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 41/81 (50%) Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 + + LV TG + R AQ V G + +S+KT +++ G GSKL Sbjct: 832 WEEPEQTLAGLTLVITGNIPGFTRESAQLAVEDRGGKATGSVSKKTSVVVAGTGSGSKLA 891 Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720 KA+ LG+ ++ E+F LL++ Sbjct: 892 KAEALGIPVIPAEEFPALLER 912 Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 82/281 (29%), Gaps = 14/281 (4%) Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR--VLVKRAGEVIPK 412 E G + + D A R I VG R + ++ GE Sbjct: 475 WVMPEMCPSCGTRLGQEKEGDIDLRCPNQAGCPAQITERLIHVGARGALDIEGLGEEGAL 534 Query: 413 VVDIIVNERHPDAQPFSFPSFCP-ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 + R A S C + + + Sbjct: 535 ALTQPEAGRADVAAALSAGGSCMLEDGTEIRVPAGKPLELGAIESLLPPTQEPVLRSEAG 594 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L S+D ++ + + F P T E Sbjct: 595 LFDLKSKDLRDVFVWREVPGTAGRDWQQVRFFWAKP-KRVTAAEAATFGLVAGELGEPVA 653 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 +V ++ + R+ R + +L IRH+G AR++A+ + + A Sbjct: 654 GKTVETFFNQLAAARSKETWRVLVALSIRHLGPVAARAVARKFPTL----------AAVA 703 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632 D L +V VG +IA ++V++++ P + V A + Sbjct: 704 AADVEDLSQVEGVGTVIAASVVDWFRVPWHQEIVLAWTQAG 744 >gi|332992915|gb|AEF02970.1| DNA ligase (NAD(+)) [Alteromonas sp. SN2] Length = 649 Score = 252 bits (642), Expect = 3e-64, Method: Composition-based stats. Identities = 152/697 (21%), Positives = 278/697 (39%), Gaps = 102/697 (14%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 I + Y+ PI+ D +YD H P L N + E + Sbjct: 48 ILKASNALYRAGSPILSDKQYDIYISLLRDQNHLHPYL----------NTVEPEPLIESK 97 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK--DDNSIFFTLEPKIDGTMITIRYEK 145 V LS EK ++++D+ K++ RI + Q+ + I + PK+DG Y+ Sbjct: 98 TVELPERMLSTEKAYSLQDIEKWVKRIQKAAQETNVPEEEIDIRVTPKLDGYAA---YDD 154 Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205 G RGDG+ G+DV+ + + N E GE+ I K+ F + Sbjct: 155 GD--TLYTRGDGYRGQDVTRAFKRGLKVA-----NSGERGLGPGEIVIKKSYFTEVLSS- 206 Query: 206 IAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 + N RN + I+ + + + + Sbjct: 207 ------YFENSRNIQAAIIAEKKVDNRIQKAIKDGACVFYPFAL---------------- 244 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 NN V+ + S + I S++ +D+DG++ + +++K +G R+ RW Sbjct: 245 -LKNNTVKISVLMDEFESIV---EGIWSSVDFDVDGVILETTNETIKKYMGATRRNHRWQ 300 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 I+ K E+ A+ ++ + Q RTG + PVA L P + G I+ T+H+ + +K Sbjct: 301 IAFKVNEESANVEVVRVIPQTSRTGRIAPVAELVPTKLSGVTISRVTVHHYNMVK----- 355 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 + G + + R+G VIPK+ +++ P CP C S ++ + Sbjct: 356 ------TNGVGAGAIIRLVRSGLVIPKIEEVLTKVAPD------IPDSCPSCGSHLLWES 403 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 + C + C AQ L HF N K + +F ++ Sbjct: 404 DN--------LICPNKIDCPAQTENTLVHFFKTLGNNDGFGSKTI------EKLTSFGVK 449 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR--NISLERFIFSLGIRHVG 563 +I++L+ GFG+ + NL++ + R I RF+ + G+ +G Sbjct: 450 YIHEIYSLEVDDFLKI-------GFGEKTAINLFNQLQASRSIEIEDWRFLSAFGVSRLG 502 Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN-PRNI 622 + L ++ S + + +I++ +I A+AI E +N Sbjct: 503 SGNCEKLLEH-HSLVSLFELT----------VSDMIQIDGFAEISAEAIKEGLENIREEF 551 Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 V L + P+ + + +SS I +VFTGT+ + R ++ LGA V ++ Sbjct: 552 FKVYDLGFALRPTAIENTEKLSSPISGAIIVFTGTMIEGSRSDMEKNAKALGAKVGKSVT 611 Query: 683 RKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 KT ++ GD G +K+ A+ GVK+++E+Q+L + Sbjct: 612 SKTTYLVTGDKVGETKINAAKDKGVKVLSEQQYLDFI 648 >gi|218515813|ref|ZP_03512653.1| NAD-dependent DNA ligase LigA [Rhizobium etli 8C-3] Length = 216 Score = 249 bits (636), Expect = 1e-63, Method: Composition-based stats. Identities = 98/218 (44%), Positives = 142/218 (65%), Gaps = 3/218 (1%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 + ++ L+IE+A EL L +EI++HD Y+ +P I D++YDALKRR DA+ F Sbjct: 2 STEGSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEARF 61 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P+L R + P +G +++ V H+ P LSL+ ++ ED++ F+ +YRF + Sbjct: 62 PELIRE---DSPSRHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLP 118 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 D SI FT EPKIDG ++IRYE G+ V AA RGDG +GE+V+A IR I IP L +P Sbjct: 119 DQSIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVP 178 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAA 220 ++E+RGEVY++K+DFLALN +M A G++ Y NPRN A Sbjct: 179 AVVEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTA 216 >gi|167461915|ref|ZP_02327004.1| NAD-dependent DNA ligase LigA [Paenibacillus larvae subsp. larvae BRL-230010] Length = 363 Score = 247 bits (629), Expect = 6e-63, Method: Composition-based stats. Identities = 109/363 (30%), Positives = 176/363 (48%), Gaps = 17/363 (4%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L +EI+ H+ YY +P I D EYDAL R + + + PN P ++GG Sbjct: 8 MKILIEEINKHNYHYYTLDEPTITDQEYDALYDRLLKLEKE----SGTVLPNSPTLRVGG 63 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-------NSIFFTLEPK 133 ++ H SL+K +IE L+ + R+ + + F +E K Sbjct: 64 DILKGFEPHRHRSRLWSLDKAQSIEVLKNWHNRVQKLVNDYNSKNPSTPLPEPSFAVELK 123 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 DG I + Y++G V A+ RG+G GE + A ++ I ++P + +IEV+GE + Sbjct: 124 FDGLTINLTYDQGNLVQASTRGNGVVGEGILAQVKTIKSVPLEIPYK-EGLIEVQGEGMM 182 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + N +P N RNAA+G LR LNP R L F + +G + Sbjct: 183 LLSVLDQYNQTA----AEPLKNARNAAAGALRNLNPKVTAERRLTAFFYNVGFSDRKQFM 238 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 EM+ ++ F VN V+ NT + +++ R + IDG V KV + + Sbjct: 239 NHQEMIAFLKENHFKVNPYVKYFNTIDEVFEEMKKLEQERHDFDFLIDGAVIKVTDIRTR 298 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG + PRW I++KF ++ +T L + ++GRTG +TPVA++EPV + G + N T Sbjct: 299 EVLGYTEKFPRWAIAYKFEAEEVTTVLEGVSWEVGRTGKITPVAKVEPVELAGVTVQNCT 358 Query: 373 LHN 375 L+N Sbjct: 359 LNN 361 >gi|330722383|gb|EGH00233.1| DNA ligase [gamma proteobacterium IMCC2047] Length = 258 Score = 247 bits (629), Expect = 7e-63, Method: Composition-based stats. Identities = 68/194 (35%), Positives = 108/194 (55%), Gaps = 6/194 (3%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ R+E+ +L +++ H+ YY +P I D EYD L R+ I P+L Sbjct: 1 MTSAPLRQEVEALRAQLNQHNYRYYVLDEPSIPDVEYDRLLRQLQTIEAQHPELI---SQ 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G + + +VTH + LSL+ +N +++R F RI KD + + F E Sbjct: 58 DSPTQRVGAQPLTAFGEVTHDMRMLSLDNAFNDDEMRDFERRIKDRL--KDTSELEFVCE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 PK+DG +++ YE G FV A RGDG +GE+++ +R +P+IP L PE +EVRGE Sbjct: 116 PKLDGIAVSLLYENGIFVRGATRGDGQTGENITQNLRTVPSIPLTLMGTGWPERLEVRGE 175 Query: 191 VYISKNDFLALNDE 204 VY+ K F A N + Sbjct: 176 VYMPKAGFDAFNKQ 189 >gi|149198973|ref|ZP_01876014.1| NAD-dependent DNA ligase [Lentisphaera araneosa HTCC2155] gi|149137968|gb|EDM26380.1| NAD-dependent DNA ligase [Lentisphaera araneosa HTCC2155] Length = 647 Score = 245 bits (626), Expect = 2e-62, Method: Composition-based stats. Identities = 131/712 (18%), Positives = 244/712 (34%), Gaps = 96/712 (13%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + +L+ ++ + Y + + D+EYD L + R K+G Sbjct: 3 IDALKAKLDQANQLYRTGGESPLSDAEYDYL------LEQVNDQKFRD--------KVGY 48 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 E+ + KV ++P SL KI ++ + K + PK DG + Sbjct: 49 EIEKN--KVELAVPMGSLNKIKTQAEVFDWSK------SKSIPLDTEICVTPKYDGLSLL 100 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + + G + A RGDG G+DV P L L + GE + + F Sbjct: 101 VYFVDGIYKGAYTRGDGMFGQDVGEHFTVNP--LCDLRLPQDFTGYLIGECIMDEAKFQT 158 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260 E + NPRN +G+L R + + + +G+ + Q E + Sbjct: 159 KYSE-------KFKNPRNMVAGLLSRKTLSRELADVCYVAYGVRSAQMAHKQDQVEFCNR 211 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 + + K S + DGLV ++++ L Q+G+ Sbjct: 212 YINAQWKYKVLCPL--YKLEDLKDAELQKVYDSETRFQCDGLVLEINDSDLFHQIGKETN 269 Query: 321 --SPRWMISHKFAEKQAS-TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +P + K + + + ++ QI + G PV R+EP+++ G I+N T N Sbjct: 270 SLNPGAARAWKPESDDSLPSIVKEVVWQISKNGAAKPVIRIEPIDLAGVTISNVTGINAR 329 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 +I+ I G V + R+G+VIPKV+ + + P CP C Sbjct: 330 FIE-----------DSGIAKGATVTIIRSGDVIPKVIGVPNAI-----ENVDLPKQCPSC 373 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +S +V + N C L + + + F + A + +G+ + + + Sbjct: 374 ESELVWNEN------RVDIVCENKLCPATNKAALIDFFSTLKA---DEVGEGIITSLWDA 424 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 +++ + + + GF + DSI + Sbjct: 425 G-----------YQSVKNLLNLTMEDLLKLEGFKQRKAKKVLDSIKISVVDVPLPRLQHA 473 Query: 558 GIRHVGAEIARS-LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 G + L + Y A + L+ V +I A++ ++ Sbjct: 474 SNLFKGLGEKKLELLQKY------------DQAGIKPSFEELLEVDGYSEISAKSYLD-- 519 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 L + N + LVFTG + + +E V G Sbjct: 520 SIDAYWEFAAEL---PGLKYKKVLVNEGGMFAGQTLVFTG----FRSPELEEQVKTEGGK 572 Query: 677 VSAILSRKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 + + +S+KT +++V SK +KA LGV++ + L Sbjct: 573 IGSSVSKKTSVLVVKAKGSGSSKEKKAIDLGVEVWGRDDLENKLNSAEDEPE 624 >gi|325662258|ref|ZP_08150873.1| hypothetical protein HMPREF0490_01611 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471510|gb|EGC74731.1| hypothetical protein HMPREF0490_01611 [Lachnospiraceae bacterium 4_1_37FAA] Length = 402 Score = 245 bits (624), Expect = 3e-62, Method: Composition-based stats. Identities = 111/438 (25%), Positives = 199/438 (45%), Gaps = 42/438 (9%) Query: 284 YYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDID 343 ++ DGLV D+ + + LG A+ PR + K+A++ T L +I+ Sbjct: 1 MFDFFAEHIEENDIPSDGLVLTYDDIAYGQSLGSTAKFPRDSFAFKWADEIRETTLREIE 60 Query: 344 IQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLV 403 RTG++ PVA +PV + G ++ A++HN ++ L+ + +GD + V Sbjct: 61 WSPSRTGLINPVAIFDPVELEGTTVSRASVHNLSIMEELE-----------LGIGDTIQV 109 Query: 404 KRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463 +A +IP++ + + P CP C Sbjct: 110 YKANMIIPQIAENLTRSGMA-----PVPECCPACGGET-----EIRQVSDTKTLYCTNPD 159 Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK 523 C A+ ++ FVSRDA NI+GL + L+ F IR +DIF L+R + Sbjct: 160 CGAKHIKAFSLFVSRDAMNIDGLSEATLEKFITR----GFIRHFSDIFHLERY----GEE 211 Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583 I ++ GFG+ S NL DSI K R +L + I+ LGI ++G A+ + + + Sbjct: 212 IRSMEGFGEKSYKNLQDSIEKARTTTLPKLIYGLGIANIGLSNAKMICRAFD-------- 263 Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 ++ D +L + VGD+IA+A V+++ + LL+EV + Sbjct: 264 -YDVEKMLQADVEALNEIQGVGDVIARAFVDYFAVEDHREEFFRLLEEVKIPEEETTQEE 322 Query: 644 SSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEK 700 V TG+++ R++ +E + G V+ ++ KT+ +I ++ SK +K Sbjct: 323 Q-IFAGMNFVITGSVEHFANRNEVKEVIESKGGKVTGSVTSKTNWLINNDVESTSSKNKK 381 Query: 701 AQQLGVKIMNEEQFLFLL 718 A++LG+ I++E+ FL ++ Sbjct: 382 ARELGIPIISEDTFLKMI 399 >gi|297250739|ref|ZP_06934237.1| DNA ligase, NAD-dependent [Neisseria polysaccharea ATCC 43768] gi|296838226|gb|EFH22164.1| DNA ligase, NAD-dependent [Neisseria polysaccharea ATCC 43768] Length = 539 Score = 244 bits (623), Expect = 4e-62, Method: Composition-based stats. Identities = 158/555 (28%), Positives = 243/555 (43%), Gaps = 141/555 (25%) Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347 M+ R LPY+IDG+V KV+ + Q++LG +R+PRW I+HKF ++ T + ID+QIG Sbjct: 1 MQQKRPELPYEIDGMVVKVNSLAQQRELGFISRAPRWAIAHKFPAEETLTVVEAIDVQIG 60 Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407 RTG +TPVARL+PV +GG +TNATLHN+D + +D+RVGD V+V+RAG Sbjct: 61 RTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAG 109 Query: 408 EVIPKVVDIIVNERHPDA---------------------------------QPFSFPSFC 434 +VIP+VV +I R +P+ P+ C Sbjct: 110 DVIPEVVRVIFERRPMQETDVTGLSDGIGHRQDDLFAEAPAANQTQSVPLHKPYRLPTRC 169 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC+S + R+ A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ Sbjct: 170 PICRSEIEREEGE------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQL 223 Query: 495 FKSEDPAFSIRIPA-DIFTLQRRQQTSTTKIENILGFG----------------DVSVTN 537 + + DI TLQ+ ++ + + + N Sbjct: 224 VAQDLVRHFADLYRLDIPTLQKMKEAADKTVAELDQMPSEGSSVGASGKHKKQPTKWAEN 283 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ--------------- 582 + I + L RF+F+LGIRHVG A++LA+ + + + + Sbjct: 284 ILAGIEASKTPELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTV 343 Query: 583 -----EINNIIAHNNDDWLSLIR--------------------------VPL--VGDIIA 609 A L+ +P + + A Sbjct: 344 VAHSIAHFFAQAEQQAMIDELLAAGVTPQTQAVTIPPARHAEPQRWIARLPDFKISENKA 403 Query: 610 QAIVE---------------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS--- 645 QA+ E + P+N +E L + E S Sbjct: 404 QALWELAGKNIEGLQNDKALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGI 463 Query: 646 --EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 + K V TGTL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA Sbjct: 464 NKAVAGKTFVLTGTLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANA 523 Query: 704 LGVKIMNEEQFLFLL 718 LGV +++E + L LL Sbjct: 524 LGVSVLSEAELLTLL 538 >gi|218459622|ref|ZP_03499713.1| NAD-dependent DNA ligase LigA [Rhizobium etli Kim 5] Length = 186 Score = 244 bits (623), Expect = 4e-62, Method: Composition-based stats. Identities = 75/182 (41%), Positives = 117/182 (64%) Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 LY +IN+ R+I+L RFI++LGIRHVG A+ LA+ Y +Y+ FA + + D W Sbjct: 3 KLYAAINEPRSIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMREAAPLSGDAWN 62 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 L + +G+++A+A+VEFY+ P NI + LL EV+P S + K +VFTG Sbjct: 63 DLNAIEGIGEVVARAMVEFYKEPLNIEVITRLLDEVTPQEAEQPVTAGSPVAGKTVVFTG 122 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+K R +A+ LGA V+ +S+KTDI++ G GSKL+KA++LGV+ M+E+++L Sbjct: 123 SLEKFTRDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLA 182 Query: 717 LL 718 L+ Sbjct: 183 LI 184 >gi|255067693|ref|ZP_05319548.1| DNA ligase, NAD-dependent [Neisseria sicca ATCC 29256] gi|255048034|gb|EET43498.1| DNA ligase, NAD-dependent [Neisseria sicca ATCC 29256] Length = 543 Score = 243 bits (621), Expect = 6e-62, Method: Composition-based stats. Identities = 157/564 (27%), Positives = 248/564 (43%), Gaps = 153/564 (27%) Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347 M+ R +LPY+IDG+V KV+ + Q++LG +R+PRW I+HKF ++A T + ID+QIG Sbjct: 1 MQQKRPSLPYEIDGMVVKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIG 60 Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407 RTG +TPVARL+PV +GG +TNATLHN+D + +D+RVGD V+V+RAG Sbjct: 61 RTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAG 109 Query: 408 EVIPKVVDIIVNERHPDA---------------------------------QPFSFPSFC 434 +VIP+VV +I R +P+ P+ C Sbjct: 110 DVIPEVVRVIFERRPMQETAVSNVSDGLKYQQDDLFAETPSTNQTQSVPLHKPYRLPTHC 169 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC+S + R+ A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ Sbjct: 170 PICRSEIEREEGE------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGQKQIEQL 223 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI-------------------------LG 529 + +R AD++ L + + Sbjct: 224 VAQD----LVRHFADLYRLDIPTLQKMKETADKVSSENENGDAETVSDDLSELNTQNGKK 279 Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 N+ I + L RF+F+LGIRHVG A++LA+ + S ++ + I+A Sbjct: 280 QPTKWAENILAGIEASKTPELTRFLFALGIRHVGERTAKTLAQAFGSLEHVRRAPEPILA 339 Query: 590 --------------------HNNDDWLSLIR--------------------------VPL 603 L+ +P Sbjct: 340 CLPDIGTVVARSIAHFFAQDAQQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPG 399 Query: 604 --VGDIIAQAIVE---------------------FYQNPRNICAVEALLKEVSPSIGRHE 640 + + AQA+ E + +N +E L + + ++ Sbjct: 400 FKISENKAQALWELAGKSIEGLQTDKALPADWQTWRSETQNAALLENLKTFFAQTSSENQ 459 Query: 641 KNV-----SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695 + + + K V TGTL ++R +AQ + G VS +S+KTD ++ G+ G Sbjct: 460 EATVSDDLNEAVAGKTFVLTGTLPTLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAG 519 Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719 SKLEKA LGV +++EE+ L +L Sbjct: 520 SKLEKANALGVAVLSEEELLTMLD 543 >gi|213421996|ref|ZP_03355062.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 271 Score = 243 bits (621), Expect = 6e-62, Method: Composition-based stats. Identities = 92/274 (33%), Positives = 146/274 (53%), Gaps = 8/274 (2%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 Y+ P ILD+EYD L R + PDL P+ P ++G + ++ H +P Sbjct: 2 YHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDSPTQRVGAAPLTAFNQIRHEVP 58 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL+ +++ E F R+ K ++ + E K+DG ++I YE G V AA R Sbjct: 59 MLSLDNVFDEESFLAFNKRVQDRL--KSTENVIWCCELKLDGLAVSILYENGVLVSAATR 116 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 GDG +GED+++ +R I IP L + P +EVRGEV++ + F +N++ G K + Sbjct: 117 GDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINEDARRTGGKVF 176 Query: 214 ANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIFAKGQYEMLQKMRCLGFPVNNG 271 ANPRNAA+G LR+L+P R L FF +G+G L + + G PV++ Sbjct: 177 ANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQFKAWGLPVSDR 236 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 V ++ ++ +Y+ ++ R TL +DIDG+V K Sbjct: 237 VTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIK 270 >gi|51244858|ref|YP_064742.1| NAD-dependent DNA ligase [Desulfotalea psychrophila LSv54] gi|81642639|sp|Q6API9|DNLJ_DESPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|50875895|emb|CAG35735.1| related to NAD-dependent DNA ligase [Desulfotalea psychrophila LSv54] Length = 679 Score = 243 bits (620), Expect = 9e-62, Method: Composition-based stats. Identities = 151/707 (21%), Positives = 262/707 (37%), Gaps = 106/707 (14%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYD-ALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 L + + Y + P++ D YD P L ++ E Sbjct: 65 DLLSFLQAANALY-RAGYPLLSDEAYDFTFLTELRRRNPQHPYLL----------QVEAE 113 Query: 82 MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK--DDNSIFFTLEPKIDGTMI 139 V + LS +K +++E +R++ RI + Q+K D S+ F PK+DG Sbjct: 114 PVQQGKTVELPMRMLSTDKAYDLESIRRWGRRIEKAAQEKGIDFTSLVFRGTPKLDGFAA 173 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 Y+ G+ RGDG G DVS + R S + GE+ ++K+ F Sbjct: 174 ---YDDGR--RLYTRGDGKKGTDVSRAFARGLQVSRGGSRGLGA-----GEIVVNKDYFT 223 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259 + + N RN + +++ G + Sbjct: 224 EHLAQ-------FFDNSRNFQASLIKEK----TLALPVVKAIEAGAAIFFPFSMLPDWRG 272 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 L V + + +PY+IDG+V+++ + L++ +G Sbjct: 273 SWLELLQEFEEIV----------------EGLWQKVPYEIDGVVFEIIDEGLREVMGATR 316 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 RW I+ K + A +L + Q R G + PVA +EP + GALI T H+ + Sbjct: 317 HHHRWQIAFKKNTEIAEVTVLRVRPQTSRLGRVNPVAEVEPTRLSGALIQRVTAHHYAMV 376 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439 + R I G R+ + R+GEVIPK+ +++ A P+ CP C S Sbjct: 377 R-----------DRGIGPGARIRMSRSGEVIPKIEEVVKPVA---AAQLDIPAHCPSCGS 422 Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 + D + C ++C AQ ++HF N++G G + ++ Sbjct: 423 DLAWDGD--------YLFCLNNMSCPAQITNSMEHFFKIL-GNVDGFGPSSVQRLYE--- 470 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI--SLERFIFSL 557 + L + E + GFG TN+ + +N+ R RF+ + Sbjct: 471 -GGLV-------DLPALYAMESADFEQV-GFGPKQATNMVEQLNRSREELIEDWRFLAAF 521 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 G+ +G L +Y F I+A + + A +I Sbjct: 522 GVHRLGMGNCEKLLRYVRLEDVFNLSEEQIVA----------EIKGFQEKTAHSICAGLA 571 Query: 618 NPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 L +P + + S I K +VFTG + R ++ Sbjct: 572 --GIKDLFFQLFALGFKLEPTPLLAEGGQGEKSPISGKTIVFTGAMLAASRGDMEKQAKA 629 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 LGA V ++ KTD+++ G G +K+ KA+ LG+ I++EE + L+ Sbjct: 630 LGATVGKSITGKTDMLVTGQRVGATKMAKAETLGIAILSEEAYRQLV 676 >gi|312878358|ref|ZP_07738269.1| DNA ligase (NAD(+)) [Caldicellulosiruptor lactoaceticus 6A] gi|311794859|gb|EFR11277.1| DNA ligase (NAD(+)) [Caldicellulosiruptor lactoaceticus 6A] Length = 259 Score = 243 bits (619), Expect = 1e-61, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 124/247 (50%), Gaps = 8/247 (3%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 +K + L I+YHD YY P I D EYD L R + +P+ P+ P Sbjct: 5 IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQ 61 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ +V H +P LSL ++N +L F R+ ++ + +E KIDG Sbjct: 62 RVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLG---TSNFDYVVEYKIDG 118 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + + YE G FV A RGDG+ GEDV+ ++ I +IP L +I I VRGEV++ K+ Sbjct: 119 LSVALEYENGLFVRGATRGDGNVGEDVTENLKTIRSIPLRLKEDIS--IVVRGEVFMPKD 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 +F+ LN E +ANPRNAA+G LR+L+P + + E + E Sbjct: 177 EFIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNVQWCEKRIETHAE 236 Query: 257 MLQKMRC 263 L+ + Sbjct: 237 ALEFFKS 243 >gi|289751694|ref|ZP_06511072.1| LOW QUALITY PROTEIN: DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis T92] gi|289692281|gb|EFD59710.1| LOW QUALITY PROTEIN: DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis T92] Length = 409 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 119/427 (27%), Positives = 196/427 (45%), Gaps = 30/427 (7%) Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ +R G PV+ A G+ + R + ++IDG+V KVDE +LQ+ Sbjct: 1 MHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQR 60 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG +R+PRW I++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ + ATL Sbjct: 61 RLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQATL 120 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN IK + + +GD V++++AG+VIP+V+ +V R + F P+ Sbjct: 121 HNASEIKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPTT 169 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S + + + A RC C Q ER+ H SR+ +IE LG + Sbjct: 170 CPECGSPLAPE-----KEGDADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYEAGVA 224 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 +++ I ++F L R T G + L +++K + L R Sbjct: 225 LLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRV 280 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + +L IRHVG AR+LA + S A L V VG IA A+ Sbjct: 281 LVALSIRHVGPTAARALATEFGSLDAIAAA----------STDQLAAVEGVGPTIAAAVT 330 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 E++ + V+ + +++V + +V TG+L R A+E + Sbjct: 331 EWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVAR 390 Query: 674 GAVVSAI 680 G + Sbjct: 391 GGKAAGS 397 >gi|215428469|ref|ZP_03426388.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T92] Length = 411 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 119/426 (27%), Positives = 196/426 (46%), Gaps = 30/426 (7%) Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 ++ +R G PV+ A G+ + R + ++IDG+V KVDE +LQ++ Sbjct: 3 HQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRR 62 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PRW I++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ + ATLH Sbjct: 63 LGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQATLH 122 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N IK + + +GD V++++AG+VIP+V+ +V R + F P+ C Sbjct: 123 NASEIKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPTTC 171 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S + + + A RC C Q ER+ H SR+ +IE LG + Sbjct: 172 PECGSPLAPE-----KEGDADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYEAGVAL 226 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 +++ I ++F L R T G + L +++K + L R + Sbjct: 227 LQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVL 282 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +L IRHVG AR+LA + S A L V VG IA A+ E Sbjct: 283 VALSIRHVGPTAARALATEFGSLDAIAAA----------STDQLAAVEGVGPTIAAAVTE 332 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 ++ + V+ + +++V + +V TG+L R A+E + G Sbjct: 333 WFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVARG 392 Query: 675 AVVSAI 680 + Sbjct: 393 GKAAGS 398 >gi|303252068|ref|ZP_07338237.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649050|gb|EFL79237.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 253 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 94/272 (34%), Positives = 147/272 (54%), Gaps = 21/272 (7%) Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510 + A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ + E + PAD+ Sbjct: 2 EGEAVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQLMECE----LVHTPADL 57 Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 F L T + + G+ S N +SI K +N +L RF+F+LGIR VG A++L Sbjct: 58 FKL------DHTTLMRLERMGEKSAQNALNSIEKAKNTTLARFLFALGIRDVGEATAQNL 111 Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 A ++ + + L V VG+++A IV F+Q P N+ VE L+ Sbjct: 112 ANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVRFWQEPHNVAVVEDLIS 161 Query: 631 EVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 + + + ++ K +V TGTL ++ R +A+ + G VS +S KTD +I Sbjct: 162 QGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSFGCKVSGSVSSKTDYLI 221 Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 G+ GSKL KAQ+LGVK++ E++F+ L + Sbjct: 222 AGEKAGSKLAKAQELGVKVLTEQEFIALTGEN 253 >gi|313618396|gb|EFR90422.1| DNA ligase [Listeria innocua FSL S4-378] Length = 303 Score = 240 bits (612), Expect = 7e-61, Method: Composition-based stats. Identities = 107/325 (32%), Positives = 162/325 (49%), Gaps = 32/325 (9%) Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462 +K+AG++IP+V+ I ER+ +PF P CP C S +VR A RC Sbjct: 2 IKKAGDIIPEVIKSITEERNGSEKPFHMPKNCPTCDSELVRLEEE------VALRCINPK 55 Query: 463 ACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT 522 C AQ E L HFVSR+A NI+GLG++ + F I+ AD+F L + Sbjct: 56 -CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS----MHLIKDVADLFFLSKE------ 104 Query: 523 KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582 K+ + G+ SVTNL SI + SLE+ +F LGIRHVGA+ A+SLA ++ + N Sbjct: 105 KLLELERMGEKSVTNLLASIEASKQNSLEKLLFGLGIRHVGAKAAKSLAVHFETMDNL-- 162 Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK- 641 D +L + +G+ +A +IV ++ N +E L + K Sbjct: 163 --------KIADKETLTSINDIGEKMADSIVTYFANEEVHDLLEELKRAGVNMTYTGPKL 214 Query: 642 ----NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697 K +V TG L+K+ R+ A+ + LG VS +S+KTD+++ G + GSK Sbjct: 215 ENMSEEELVFAGKTVVLTGKLEKLTRNDAKALIESLGGNVSGSVSKKTDVVVAGSDAGSK 274 Query: 698 LEKAQQLGVKIMNEEQFLFLLQQYN 722 L KA++L + I +EE + L Sbjct: 275 LAKAEELAIPIWSEEDLIEYLPDEG 299 >gi|166788183|emb|CAP40308.1| NAD-dependent DNA ligase [Candidatus Phytoplasma solani] Length = 333 Score = 240 bits (611), Expect = 9e-61, Method: Composition-based stats. Identities = 124/340 (36%), Positives = 184/340 (54%), Gaps = 12/340 (3%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A K++ SL + ++ + YY S P I D +YDAL + + +P P P Sbjct: 5 AIKKIKSLVKLLNEANYQYYNLSNPKINDQQYDALLKELIILETNYPQ---HRLPYSPTL 61 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 KIGG + H+IP +SL+ +NIE+L+ F RI + + S E KIDG Sbjct: 62 KIGGFVEKKFKNFHHTIPMMSLDNAFNIEELKNFYDRIVKI-----NPSFSLLTELKIDG 116 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I ++Y+KG A RG+G GED++ ++ I T+P LS I IEVRGE+Y+S Sbjct: 117 VAINLKYKKGILTQALTRGNGILGEDITKNVQTIKTVPLKLSQPI--DIEVRGEIYLSYP 174 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQY 255 F LN + + P+ANPRNAASG LR+LN R L+ F++ + I Q Sbjct: 175 AFEKLNQKQKENNKTPFANPRNAASGTLRQLNSKIVAQRNLSIFIYNIASPYLIKP-TQL 233 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 L+ + LGF VN A TF ++ K I+ T PYD DG+V KV+E +L + Sbjct: 234 ASLEFLIQLGFTVNPHYNLALTFEDLLVKIQNYKVIKDTQPYDTDGVVIKVNELALHALI 293 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 G +++P+W I++KF K + + + DI Q+GRTG++TP+ Sbjct: 294 GATSKAPKWAIAYKFPAKTSQSIVTDIIFQLGRTGMITPI 333 >gi|311977685|ref|YP_003986805.1| DNA ligase [Acanthamoeba polyphaga mimivirus] gi|82000023|sp|Q5UPZ0|DNLJ_MIMIV RecName: Full=DNA ligase; AltName: Full=NAD-dependent DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|55416925|gb|AAV50575.1| NAD-dependent DNA ligase [Acanthamoeba polyphaga mimivirus] gi|308204745|gb|ADO18546.1| DNA ligase [Acanthamoeba polyphaga mimivirus] Length = 636 Score = 239 bits (609), Expect = 2e-60, Method: Composition-based stats. Identities = 117/695 (16%), Positives = 234/695 (33%), Gaps = 97/695 (13%) Query: 32 DDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN-KIGGEMNLSLFKVT 90 + Y+ +I D EYD L R + +P+ + ++G + KV Sbjct: 33 SEYYHNTGTSLISDQEYDILMDRLKEL-----------NPSSKIFAQVGAPV--KGKKVK 79 Query: 91 HSIPTLSLEKIW-NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149 S+ KI + + + K++ + S + + K+DG + + K Sbjct: 80 LPFWMGSMNKIKADEKAVNKWLN----------EYSGPYVISDKLDGISCLLTIKNNK-T 128 Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209 RGDG G+D++ + + I L I + I +RGE+ +SK +F + Sbjct: 129 KLYTRGDGTYGQDITHLLG-LINIDIGLLEEIDQDIAIRGELIMSKKNFEKYQE------ 181 Query: 210 RKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVN 269 AN RN GI+ + + V + L+ ++ G V Sbjct: 182 --IMANARNMVGGIVNSKPESVNKDHAA-DVDLIFYEVIKPNDKLSRQLKILKEWGLKVV 238 Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329 + + + + Y+IDG++ + ++ G P + + K Sbjct: 239 YYN--IYKTFDVNILESVLSERKKKSGYEIDGIIVTDNNKHVRNISGN----PSYSFAFK 292 Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389 T + + + G+L P + + V + + T N YI Sbjct: 293 GDTPTIDTVVKRVIWTPSKDGVLVPRIKFKKVRLSNVDLEYTTGFNAKYI---------- 342 Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449 I G + V R+G+VIP + ++ + PD + + + +T Sbjct: 343 -VDNKIGSGAIINVVRSGDVIPYITHVVKPAKKPDLPNIEYVWDKNGVNIILADINDNET 401 Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509 + + + V I + + F Sbjct: 402 VIIKRLTKFMRNIGAENISEGITTRLVEAGFDTIPKIINMTEEDFL-------------- 447 Query: 510 IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569 T + NL +S++ ++L G R G + + Sbjct: 448 ------------TIDGFQERLAEKIYNNLQNSLDNLDILTLMDASNIFG-RGFGTKKFKK 494 Query: 570 LAKYYLSYQN-FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 + Y + N + +E +NI L+ + I +F N + Sbjct: 495 ILDVYPNIVNQYTKETDNIWRKK------LLDIEGFDTITVN---KFLGEMPNFQKFYKV 545 Query: 629 LKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 + + ++ E N +N+ +VFTG + Q+++ G VS +S+ T + Sbjct: 546 INKTITIKPYISEVNSEGIFQNQTVVFTG----FRNADWQKFIENEGGKVSGSVSKNTSL 601 Query: 688 IIV--GDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ G+ +K +KA+QLG+K M + F ++ Sbjct: 602 LVYNDGEESSAKYQKAKQLGIKTMTKSSFSKKFEK 636 >gi|82701055|ref|YP_418155.1| putative NAD-dependent DNA ligase [Pseudomonas phage EL] gi|82657960|emb|CAG27216.1| putative NAD-dependent DNA ligase [Pseudomonas phage EL] Length = 656 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 158/710 (22%), Positives = 272/710 (38%), Gaps = 86/710 (12%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + + L ++++YH Y+ ++ I D YD L++ + + +P++A D Sbjct: 1 MGKHSPVERIKYLHEQLTYHAHLYFVENRNEISDEAYDVLEQELNELYDRYPEIAAKFDF 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 I ++ V P LSL+K ++E+ F+ K + F E Sbjct: 61 YNRPVPIHEPSGETIQPVRFEEPMLSLKKALSVEEADTFL--------LKFPDGTNFFYE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACI--------RAIPTIPRVLSLNIPE 183 K+DG + + YE+G+ V + RG G GEDV+ I + Sbjct: 113 EKLDGLALELVYEQGQLVSMSTRGSGLVGEDVTHSIVLFDEATLPRTLRTLPDRHKPQGD 172 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILR---RLNPTDITRYLNFFV 240 + +RGE YIS F +LN+ +NPRNA SG +R + DI L F Sbjct: 173 RLVIRGEGYISLERFDSLNET-----GGKRSNPRNAVSGWVRSLPQNQREDIRGTLYFAA 227 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 + A + + G P + + +D Sbjct: 228 YYASDRLGTKAYSELRQVLLGLGFGVPESRDWIAVSENRRGNIR-------------PVD 274 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V KVD+F Q G ++ P W I++KF ++A ++ R G + PV + P Sbjct: 275 GIVIKVDKFKEQDASGNGSKFPHWAIAYKFPAEEALAQVEGCIWNTSRFGRVVPVVQYTP 334 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V I G + +A+L N L + +GDR+++ R +VIP++ + Sbjct: 335 VTIQGVICQSASLDNYGSFMDL-----------GLSIGDRIVITRNNDVIPRLNRVEE-- 381 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 + P+ CP C S + + + +LV C C AQ + R + Sbjct: 382 -CGEGDLLEAPTSCPSCDSLLEVVVGRDSSELV----CNNVAECPAQIVMRCVTTFDKFG 436 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +++GLG ++ + ++ PADI TL + G V + Sbjct: 437 LDVDGLGPVKVSELVEK----GWVKQPADILTLPEGIKDQCLTPTTRRGLERVLQEPVP- 491 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 L RF+ +LGI +G +A+ LA I + + L Sbjct: 492 ---------LHRFLKALGIPDIGITLAKRLANAIP---------EGKIEESLTNPKFLQS 533 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 V V IA +V + +P AL ++ + + K+ TG + Sbjct: 534 VRGVSVGIAYRVVNAFDSPVFKDNFHALKGLLTLQYTGTQDDC------IKVCITGNI-G 586 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIM 709 R + + G +S L++ +IVGD PG SKL A + G+ ++ Sbjct: 587 PSRGELCNLFAKEGIELSDRLTQDCAFVIVGDRPGKSKLLIATESGIPML 636 >gi|4235382|gb|AAD13194.1| NAD-dependent DNA ligase [Thermus sp. SM32] Length = 481 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 174/483 (36%), Positives = 266/483 (55%), Gaps = 35/483 (7%) Query: 99 EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158 + + DL+ F R+ R ++ +T+E K+DG + + YE+G V+ A RGDG Sbjct: 1 DNAFTHHDLKAFEDRVDRALGRE--GPFVYTVEHKVDGLSVNLYYEEGILVFGAPRGDGE 58 Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218 GE+V+ + IPTIPR L PE +EVRGEVY+ FL LN+E+ G K + NPRN Sbjct: 59 VGEEVTQNLLTIPTIPRRLKGV-PERLEVRGEVYMPIEAFLRLNEELEEAGEKVFKNPRN 117 Query: 219 AASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQAN 276 AA+G LR+ +P R L + LG E K QYE L + GFPV +G +A Sbjct: 118 AAAGSLRQKDPRITAKRGLRATFYALGLGLEESGLKTQYEFLLWFKEKGFPVEHGFARAT 177 Query: 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAS 336 G+ Y R LP++ DG+V K+DE +L ++LG AR+PR+ I++KF ++ Sbjct: 178 GAEGVERVYQGWLQKRRKLPFEADGVVVKLDELALWRELGYTARAPRFAIAYKFPAEEKE 237 Query: 337 TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIR 396 TRLLD+ Q+GRTG +TPV LEPV I G+ ++ TLHNE YI+ L DIR Sbjct: 238 TRLLDVVFQVGRTGRVTPVGILEPVLIEGSEVSRVTLHNESYIEEL-----------DIR 286 Query: 397 VGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456 +GD VLV +AG VIP+V+ ++ R +P +P CP C +V++ H Sbjct: 287 IGDWVLVHKAGGVIPEVLRVLKERRTGAERPIVWPENCPECGHHLVKE--------GKVH 338 Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516 RC L C A++ E ++H+ SR A +I+GLG++ ++ ++ ++ AD++ L++ Sbjct: 339 RCPNPL-CPAKRFEAIRHYASRKAMDIQGLGEKLIEKLLEN----GLVKDVADLYRLRKE 393 Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576 + G+ S NL I + ++ LER +++LG+ VG +AR+LA + + Sbjct: 394 DLVG------LERMGEKSAENLLRQIEESKHRGLERLLYALGLPGVGEVLARNLAARFGT 447 Query: 577 YQN 579 Sbjct: 448 MDR 450 >gi|213865477|ref|ZP_03387596.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 423 Score = 233 bits (594), Expect = 9e-59, Method: Composition-based stats. Identities = 175/450 (38%), Positives = 268/450 (59%), Gaps = 30/450 (6%) Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRG 189 E K+DG ++I YE G V AA RGDG +GED+++ +R I IP L + P +EVRG Sbjct: 1 ELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRG 60 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TS 247 EV++ + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 61 EVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEG 120 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV+ Sbjct: 121 GELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVN 180 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L Sbjct: 181 SLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVL 240 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P Sbjct: 241 VSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRP 289 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 FP+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G Sbjct: 290 IVFPTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRWAMDVDGMG 343 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + +D + E + PAD+F L K+ + G S N+ +++ K + Sbjct: 344 DKIIDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKA 393 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSY 577 + RF+++LGIR VG A LA Y+ + Sbjct: 394 TTFARFLYALGIREVGEATAAGLAAYFGTL 423 >gi|82913524|ref|XP_728678.1| NAD-dependent DNA ligase [Plasmodium yoelii yoelii str. 17XNL] gi|23485151|gb|EAA20243.1| DNA ligase, NAD-dependent, putative [Plasmodium yoelii yoelii] Length = 354 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 54/161 (33%), Positives = 87/161 (54%), Gaps = 6/161 (3%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++ L +EI +H+ YY+ P+I D+EYD L AI +P+L P+ Sbjct: 184 PAEVVEKARKLREEIEFHNVRYYRLDDPLITDAEYDRLMAELLAIEARYPELV---TPDS 240 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSLE ++ EDL F R+ + + +++ + EPK Sbjct: 241 PTQRVGAPPVEAFTEVRHEVPMLSLENAFSEEDLTAFDRRVRKELSR---DTLEYVAEPK 297 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 +DG + + Y+ G V AA RGDG GEDV+ +RA+ IP Sbjct: 298 LDGLAVNLLYQDGVLVRAATRGDGEVGEDVTHNVRAVRAIP 338 >gi|325989607|ref|YP_004249306.1| DNA ligase [Mycoplasma suis KI3806] gi|323574692|emb|CBZ40348.1| DNA ligase [Mycoplasma suis] Length = 590 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 163/619 (26%), Positives = 278/619 (44%), Gaps = 66/619 (10%) Query: 33 DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG--GEMNLSLFKVT 90 + YY P + D YD ++ A+ + ++G + K Sbjct: 18 EKYY-KGVPDLPDDVYDFKLKKLRAL-----------GGDIEQTQVGHVYSESKKFKK-E 64 Query: 91 HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--SIFFTLEPKIDGTMITIRYEKGKF 148 H P LSL +N E+L F I + ++ + + F +EPKIDG I+++Y+KG+ Sbjct: 65 HLEPMLSLNNAFNQEELCLFFDSIEKTLKQNNRPYKNNEFFVEPKIDGMSISLQYKKGEL 124 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVL--SLNIPEIIEVRGEVYISKNDFLALNDEMI 206 + A RGDG GED+ I I +IP+ + + PE I VRGE++I K+DF + +E Sbjct: 125 IEALSRGDGIKGEDLFEPILRINSIPKKIKLPESFPEEILVRGEIFILKSDFKKIQEESS 184 Query: 207 AVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT---SEIFAKGQYEMLQKMR 262 K ++N RN +G LR + I + L+F + + E K Q +M++ + Sbjct: 185 EKRIKTFSNARNFVAGTLRLKDFEQISDKKLSFIAYRIIPVSKEQEFPVKTQEQMIRTLE 244 Query: 263 CLGF--PVNNGVRQANTFHGIVSYYNEMKSI----RSTLPYDIDGLVYKVDEFSLQKQLG 316 LGF P + + + + + + DGLV K++ + +G Sbjct: 245 ELGFTTPPKEYSKTIIGNRANLDIFLDFIGQFGEVKDEIDIPNDGLVIKLNSLEDHEIIG 304 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ P+W I++K+ T+LL I++++GR+G +T + +LEP+ + G+ I +LHN Sbjct: 305 STAKFPKWAIAYKYPSLVKKTKLLKIELKVGRSGRITYIGKLEPIELKGSQIECVSLHNF 364 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D IK L D+R G V V ++GEVIP+++ N P P+ P+ CP Sbjct: 365 DNIKKL-----------DLREGSIVEVCKSGEVIPQIIFAESNSELP---PYELPTECPS 410 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +V K + C Q++ ++ +F S+ A NIEGL + ++ Sbjct: 411 CSSTLVFGEGDK-------LQYCRNKDCWEQKISKIVYFCSQQAVNIEGLSRGIIEKLVN 463 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + DI++L+ ++Q + + + L SI + + S ++ + Sbjct: 464 K----GFLTNILDIYSLKEKEQEIYSSKDLK--IKEKLFKKLVTSIEESKKASPQKILIG 517 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI H+G E A+ L K + S + N D S + VP VG A+ + Sbjct: 518 LGIDHIGGEAAKLLLKKFSSLEELF----------NSDLESKLNVPKVGPKSGYALENWL 567 Query: 617 QNPRNICAVEALLKEVSPS 635 ++ N VE L Sbjct: 568 KDEDNKKLVEGLKNLGFNF 586 >gi|281414409|ref|ZP_06246151.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665] Length = 248 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 87/241 (36%), Positives = 128/241 (53%), Gaps = 6/241 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + + R+E L + + YYQ P I D+EYDAL RR + + P+L Sbjct: 11 PDPQDIPAADLREEYEDLVERVRAARTAYYQRDAPEISDAEYDALYRRLEDLEALHPELV 70 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK-KDDNS 125 + P ++GGE++ + V H SLE ++++E+L + R + + + + Sbjct: 71 ---SNDSPTQEVGGEVSEAFAPVRHGARMYSLEDVFSVEELEVWFRRAAQALTQVRPGVA 127 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184 + +E KIDG + +RY G+ V AA RGDG +GEDV+A +R I IP LS P Sbjct: 128 PRWLVEVKIDGLAVALRYRDGRLVQAATRGDGVTGEDVTANVRTIGDIPHELSGEGWPAE 187 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 EVRGEV++S F LN G+ P+ANPRNAA+G LR+ +P R L FVHG+ Sbjct: 188 FEVRGEVFMSSAAFAELNARRAEEGQPPFANPRNAAAGALRQKDPAVTAQRPLAMFVHGI 247 Query: 244 G 244 G Sbjct: 248 G 248 >gi|325973164|ref|YP_004250228.1| DNA ligase [Mycoplasma suis str. Illinois] gi|323651766|gb|ADX97848.1| DNA ligase [Mycoplasma suis str. Illinois] Length = 590 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 163/619 (26%), Positives = 278/619 (44%), Gaps = 66/619 (10%) Query: 33 DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG--GEMNLSLFKVT 90 + YY P + D YD ++ A+ + ++G + K Sbjct: 18 EKYY-KGVPDLPDDVYDFKLKKLRAL-----------GGDIEQTQVGHVYSESKKFKK-E 64 Query: 91 HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--SIFFTLEPKIDGTMITIRYEKGKF 148 H P LSL +N E+L F I + ++ + + F +EPKIDG I+++Y+KG+ Sbjct: 65 HLEPMLSLNNAFNQEELCLFFDSIEKTLKQNNRPYKNNEFFVEPKIDGMSISLQYKKGEL 124 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVL--SLNIPEIIEVRGEVYISKNDFLALNDEMI 206 + A RGDG GED+ I I +IP+ + + PE I VRGE++I K+DF + +E Sbjct: 125 IEALSRGDGIKGEDLFEPILRINSIPKKIKLPESFPEEILVRGEIFILKSDFKKIQEESS 184 Query: 207 AVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT---SEIFAKGQYEMLQKMR 262 K ++N RN +G LR + I + L+F + + E K Q +M++ + Sbjct: 185 EKRIKTFSNARNFVAGTLRLKDFEQISDKKLSFIAYRIIPVSKEQEFPVKTQEQMIRTLE 244 Query: 263 CLGF--PVNNGVRQANTFHGIVSYYNEMKSI----RSTLPYDIDGLVYKVDEFSLQKQLG 316 LGF P + + + + + + DGLV K++ + +G Sbjct: 245 ELGFTTPPKEYSKTIIGNRANLDIFLDFIGQFGEVKDEIDIPNDGLVIKLNSLEDHEIIG 304 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ P+W I++K+ T+LL I++++GR+G +T + +LEP+ + G+ I +LHN Sbjct: 305 STAKFPKWAIAYKYPSLVKKTKLLKIELKVGRSGRITYIGKLEPIELKGSQIECVSLHNF 364 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D IK L D+R G V V ++GEVIP+++ N P P+ P+ CP Sbjct: 365 DNIKKL-----------DLREGSIVEVCKSGEVIPQIIFAESNSELP---PYELPTECPS 410 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +V K + C Q++ ++ +F S+ A NIEGL + ++ Sbjct: 411 CSSTLVFGGGDK-------LQYCRNKDCWEQKISKIVYFCSQQAVNIEGLSRGIIEKLVN 463 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + DI++L+ ++Q + + + L SI + + S ++ + Sbjct: 464 K----GFLTNILDIYSLKEKEQEIYSSKDLK--IKEKLFKKLVTSIEESKKASPQKILIG 517 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI H+G E A+ L K + S + N D S + VP VG A+ + Sbjct: 518 LGIDHIGGEAAKLLLKKFSSLEELF----------NSDLESKLNVPKVGPKSGYALENWL 567 Query: 617 QNPRNICAVEALLKEVSPS 635 ++ N VE L Sbjct: 568 KDEDNKKLVEGLKNLGFNF 586 >gi|291545735|emb|CBL18843.1| pseudouridine synthase family [Ruminococcus sp. SR1/5] Length = 610 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 116/456 (25%), Positives = 186/456 (40%), Gaps = 38/456 (8%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 K++ L +++ YYQ + I+ + EYDAL A+ + P Sbjct: 166 IHKKMKELGEKLREASRAYYQEDREIMSNVEYDALYDTLSALEKE----TGIVLADSPTV 221 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +G E L K H P LSL+K E LR+FI L K+DG Sbjct: 222 NVGYEAVEQLPKEEHERPMLSLDKTKEREALREFI------------GEHPTLLSWKLDG 269 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I + YE G+ + A RG+G GE ++ R IP L ++ + +RGE I+ + Sbjct: 270 LTIVLTYENGELIKAVTRGNGIVGEVITNNARVFKNIP--LKISFKGRLVLRGEAIITYS 327 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255 DF +N+ I Y NPRN SG +R+LN R + F+ L + + Sbjct: 328 DFEKINET-IGDADAKYKNPRNLCSGSVRQLNNEITAKRNVRFYAFSLVSAEGVDFRNSR 386 Query: 256 EMLQKM-RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E+ + GF V + + +T + DGLV D+ + + Sbjct: 387 EVQFRWLNEQGFEVVEYRKVTAETLD--EAMDYFAEAVTTNDFPSDGLVALYDDIAYGES 444 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+ PR ++ K+A++ TRLL+I+ RTG++ PVA EPV + G ++ A++H Sbjct: 445 LGTTAKFPRNAMAFKWADEMRDTRLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRASVH 504 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N +K L + +GD + V +A +IP++ + + + Sbjct: 505 NISIMKEL-----------KLGIGDTIRVYKANMIIPQIAENL----TGSGNAPIPHTCP 549 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 Q VV+ N C S Sbjct: 550 ACGQETVVKKENDVECLFCVNPGCPAKKIKSFGLFY 585 >gi|48374262|gb|AAT41954.1| putative DNA ligase [Fremyella diplosiphon Fd33] Length = 268 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 79/294 (26%), Positives = 139/294 (47%), Gaps = 31/294 (10%) Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 PS CP+C VVR+L A RC +C+A ++H+VSRDA +I+G+G++ Sbjct: 1 MPSNCPVCGQPVVRELGE------AVTRCVNA-SCAAILKGAIEHWVSRDALDIKGMGEK 53 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + + AD++ L + + G S L D+I + +N Sbjct: 54 LVHQLVDK----GLVHSVADLYDLTEEKLY------VLERMGQKSAQKLIDAIAQSKNQP 103 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 R ++ LGIRHVG+ A+ L + + + Q + + + +G IA Sbjct: 104 WSRVLYGLGIRHVGSVNAQLLTEKFSDVEKITQARQS----------DIAGIYGIGVEIA 153 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSE-IENKKLVFTGTLQKIQRHK 665 +++ +++Q N + L E + S+ +K V TGTL ++R + Sbjct: 154 ESVHQWFQIHANQTLISRLQAAGLQLANSAETSTITDSNPQFTDKTFVVTGTLPTLKRDE 213 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+ + + G V+ +S+KTD ++VG++ GSKL KA+ LG+ + E Q L +L+ Sbjct: 214 AKALIQKAGGKVTDSVSKKTDYLVVGEDAGSKLAKAEALGITQLTEAQLLQMLE 267 >gi|118602318|ref|YP_903533.1| DNA ligase (NAD(+)) [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|166216237|sp|A1AVV5|DNLJ_RUTMC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|118567257|gb|ABL02062.1| DNA ligase (NAD(+)) [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 614 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 147/720 (20%), Positives = 280/720 (38%), Gaps = 116/720 (16%) Query: 9 IEALSIEQARK--ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 ++ LS E+ + ++++L Y+ KPII D +YD + DA+ Sbjct: 1 MDELSDEELAQFCQIANLA----------YRAGKPIISDQDYDFIY--LDAL-------- 40 Query: 67 RSEDPNGPLNKIGGEMNLSL--FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK--KD 122 ++ DP+ L K S KV LS++K ++ +++ K+I R+ + + D Sbjct: 41 KNRDPDNLLFKFIETEGQSFSEEKVLLPEAMLSIDKAYSWDEISKWIKRLEKSAMQISLD 100 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 ++I PK+DG ++ G RGDG G D+S + N Sbjct: 101 LSAIQIKATPKLDGFSG---FDDG--SRLYTRGDGKKGSDISRVFERGLCV-----FNDA 150 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHG 242 E GE+ I K+ F + PRN + +++ + + Sbjct: 151 ERGLGAGEIVIKKSYFKKYLAH-------SFEYPRNFQASLIKEKALDEQAQKAIIDKAA 203 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 L + + + V + +D+DG+ Sbjct: 204 LFIPFIKLPTWSGLVAELVAKFDQIVAQVLVMV--------------------DFDVDGV 243 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V++ L+ Q+G + RW I+ K + +A ++L++ Q+GR+G +TPV LEP Sbjct: 244 VFEAINTDLKTQMGANRKFHRWQIAFKENKDKAHVKVLNVIPQVGRSGKITPVVELEPTL 303 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + GA I AT HN +K + + VG V + R+G VIPK++ ++ Sbjct: 304 LSGATIMRATGHNYGLVK-----------EQGLGVGSVVELTRSGLVIPKIIFVLKP--- 349 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P P CP C +V + C C AQ + ++ +F A N Sbjct: 350 ---MPVDIPDNCPSCDKPLVWKSD--------FLTCINHKNCPAQIIGKMAYFFKILANN 398 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 +G G ++ + + IR + I+ L + G + Sbjct: 399 -DGFGIATIEKLYAHD-----IRSVSQIYALNIEDLVTIGF-----GEKTSMNLINQLNR 447 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + + RF+ + G+ +G +L K +++ + + + + Sbjct: 448 SVSEQVEDWRFLAAFGMHRMGLGNCENLLK-----------SHHLNDIFDLNLKEIANID 496 Query: 603 LVGDIIAQAIVEFY---QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 ++ Q IV+ + N + + + + + ++ E+ +KK+VFTG + Sbjct: 497 GFAELTGQIIVQGLISIADEFN-HIYQYGFNLETTILTKDLQTLTHELFDKKIVFTGKMN 555 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 R +++ +G VS +S K D +++GD G K++ A++ GV +M E +L + Sbjct: 556 H-SRDDMKKHAKSIGIKVSTSISAKIDYLVIGDKVGQKKIKDAEKFGVVVMTETDYLSKI 614 >gi|257793288|ref|ZP_05642267.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9781] gi|257787260|gb|EEV25600.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9781] Length = 245 Score = 227 bits (579), Expect = 5e-57, Method: Composition-based stats. Identities = 83/254 (32%), Positives = 128/254 (50%), Gaps = 11/254 (4%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++ L ++ + YY P + DSEYD L I P+ + Sbjct: 1 MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE S KV H P LSL +N +DLRKF RI ++ + E K Sbjct: 58 PTVRVGGEAQASFKKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVGYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++Y G FV RGDG +GED++ ++ I IP + + +EVRGE Y+ Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLN--VEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + FL LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230 Query: 253 GQYEMLQKMRCLGF 266 Q E L ++ LGF Sbjct: 231 SQSEALDELDKLGF 244 >gi|261884935|ref|ZP_06008974.1| NAD-dependent DNA ligase LigA [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 195 Score = 226 bits (577), Expect = 7e-57, Method: Composition-based stats. Identities = 82/189 (43%), Positives = 114/189 (60%), Gaps = 4/189 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P ++G + V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYIS 194 EVRGEVY+ Sbjct: 181 EVRGEVYMH 189 >gi|317968248|ref|ZP_07969638.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CB0205] Length = 239 Score = 226 bits (577), Expect = 8e-57, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 114/234 (48%), Gaps = 5/234 (2%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + S L ++ YY P++ D YD L R + +A L + P + Sbjct: 9 QARASELRDLLNRAAHAYYVLDAPVMEDPVYDRLYRELLDLENADASLI---SADSPTQR 65 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG V H I LSL+ +N ++L + R+ + ++ ++ E KIDG Sbjct: 66 VGGAPAAGFSSVRHRIGLLSLDNAFNTDELEAWYGRLLKVLDREAGTALPMVGELKIDGN 125 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKN 196 + + YE G V AA RGDG GE+++A +R I ++P L N P +EVRGE I Sbjct: 126 ALALSYENGVLVRAATRGDGEQGEEITANVRTIASVPLRLQLENPPAWLEVRGEALIPDG 185 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 F A+N E A G +ANPRNA +G LR+L+P R L+FF + L + Sbjct: 186 TFAAINSERQARGEALFANPRNACAGTLRQLDPKVVAARKLDFFAYTLHLPAHW 239 >gi|299145804|ref|ZP_07038872.1| putative BRCA1 C Terminus (BRCT) domain protein [Bacteroides sp. 3_1_23] gi|298516295|gb|EFI40176.1| putative BRCA1 C Terminus (BRCT) domain protein [Bacteroides sp. 3_1_23] Length = 652 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 132/712 (18%), Positives = 258/712 (36%), Gaps = 89/712 (12%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L I H++ Y + P I D+EYDA + + + +P Sbjct: 13 LLDMIKRHNNMY-RMGTPEISDAEYDAEIELLKTLDPDN-EWFKHTEP---------AFV 61 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 K IP SL K+ +I +L+K+ K + + PK+DG + Sbjct: 62 PETRKRALPIPMKSLNKVKDISELKKWY----MSLGLKGNAGV--ICMPKLDGLSLLYNE 115 Query: 144 EKGKFVYAALRGD-GHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 G+ RG + G+D ++ GE I+++D+ Sbjct: 116 LTGE---TYSRGGIENEGQDCTSHY----RASIQCYNPASCFHYTFGEFVINRSDWEQHF 168 Query: 203 D-EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 + + +PRN A+G+L R P D + +FF +G+ ++S + +++ + Sbjct: 169 HGKRSKFTGDIFKSPRNTAAGLLNRDEPCDYLEHASFFRYGVDESSLHDYNNFHSLIETI 228 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR- 320 + + + + Y IDG+V +D+ L + +G Sbjct: 229 CNIYQQEHLYH--FAFIDELNEELLMNLFKEWSKVYPIDGIVIYIDDLRLWEVIGRHQTS 286 Query: 321 -SPRWMISHKFAEKQ--ASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +P + I++K + T + DI ++ ++G L PV +E V+ G + N T +N Sbjct: 287 GNPLYAIAYKHPDFTESFETTVKDIVWKVSKSGALKPVVNIEMVDTGDCNMENPTGYNAG 346 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFCPI 436 +I +I G +LV R+G VIPK++ + + + + S CP Sbjct: 347 WI-----------NDHEIAKGAEILVTRSGGVIPKILSTLTPATQEEQEKLWDEMSECPH 395 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S + + N C L+C QL ++ F E +G++ L F Sbjct: 396 CGSPTMWNENHIE-------LCCTNLSCPGVQLAKIIFFY--LTCGAENMGEETLSKIFN 446 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + + + L + + + + IL + + Sbjct: 447 AGFTSIPAILNITFNDLIKIEGFGDSISKIILENNRKIMQGV-----------------D 489 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 L ++ + + K + + +++D S + + +F Sbjct: 490 LATLMQASDCFKGIGK--------IKAQKILDEMDDEDLCSFCQGWYINHEPDVQSEDFK 541 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ------RHK-AQEY 669 P + + LL E + ++ K +V G + + R +E Sbjct: 542 NCPITVQNL--LLGYFPFMAFLEETKIPYKLSPKTVVLEGKCKGLSICVSGFRDSNLEEV 599 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQ 719 +T G + + +S+KT ++V D SK+ KA+ LG+ I++ E+F Sbjct: 600 ITNEGGKIVSGVSKKTTHLVVKDKSANSSKISKAKLLGIPILSIEEFCDFFN 651 >gi|332141273|ref|YP_004427011.1| NAD-dependent DNA ligase [Alteromonas macleodii str. 'Deep ecotype'] gi|327551295|gb|AEA98013.1| NAD-dependent DNA ligase [Alteromonas macleodii str. 'Deep ecotype'] Length = 171 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 95/167 (56%), Gaps = 5/167 (2%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 ++EQARK+++ L ++ ++ YY P I D+ YD + A+ +P L + PN Sbjct: 4 TLEQARKKVAELRNTLNEYNYQYYVLDDPSIPDAVYDRDMQSLIALEKQYPSL---QSPN 60 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P K+GGE + +VTH +P LSL+ ++ E L F R+ KD +S+ F+ EP Sbjct: 61 SPSQKVGGEALSAFEQVTHDVPMLSLDNAFDEESLLAFEKRLKDRL--KDTSSLHFSCEP 118 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179 K+DG ++I YE G+ V AA RGDG GE+++A +R I +P + Sbjct: 119 KLDGLAVSILYENGELVRAATRGDGQVGENITANVRTISNVPLCCAE 165 >gi|265763497|ref|ZP_06092065.1| NAD-dependent DNA ligase [Bacteroides sp. 2_1_16] gi|263256105|gb|EEZ27451.1| NAD-dependent DNA ligase [Bacteroides sp. 2_1_16] Length = 652 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 132/712 (18%), Positives = 253/712 (35%), Gaps = 89/712 (12%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L I H+ Y + P I D+EYDA + + + +P Sbjct: 13 LLDMIKRHNKMY-RMGAPEISDAEYDAEIELLKTLDPDN-EWFKHTEP---------AFV 61 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 K IP SL K+ +I +L+K+ K + + PK+DG + Sbjct: 62 SETRKRALPIPMKSLNKVKDISELKKWY----MSLGLKGNAGV--VCMPKLDGLSLLYNE 115 Query: 144 EKGKFVYAALRGD-GHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 G+ A RG + G+D + GE I+++D+ Sbjct: 116 LTGE---AYSRGGIENEGQDCTNHY----QASTQCYNPASSFHYTFGEFVINRSDWEQHF 168 Query: 203 D-EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 + + +PRN A+G+L R P D + +FF +G+ ++S + +++ + Sbjct: 169 HGKRSKFTGDIFKSPRNTAAGLLNRDEPCDYLEHASFFRYGVDESSLHDYNNFHSLIETI 228 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR- 320 + + + + Y IDG+V VD+ L + +G Sbjct: 229 CNIYQQEHLYH--FAFIDELNEELLMNLFKEWSKIYPIDGIVIYVDDLRLWEVIGRHQTS 286 Query: 321 -SPRWMISHKFAEKQ--ASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +P + I++K + T + I ++ ++G L PV +E V+ G + N T +N Sbjct: 287 GNPLYAIAYKHPDFTESFETTVKGIVWKVSKSGALKPVVNIEMVDTGDCNMENPTGYNAG 346 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFCPI 436 +I +I G +LV R+G VIPK++ + + + + S CP Sbjct: 347 WI-----------NDHEIAKGAEILVTRSGGVIPKILSTLSPATQEEQEKLWDEMSECPH 395 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S + + N C +C QL ++ F E +G++ L F Sbjct: 396 CGSSTMWNENHIE-------LCCTNPSCPGVQLAKIIFFY--LTCGAENMGEETLSKIFN 446 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + + + L + + + IL + + Sbjct: 447 AGFTSIPAILNVTFNDLIKIEGFGDSISNIILENNRKIMQGV-----------------D 489 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 L ++ + + K + + +++D S + + +F Sbjct: 490 LATLMQASDCFKGIGK--------IKAQKILDEMDDEDLCSFCQGWYINHEPDVQSEDFK 541 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ------RHK-AQEY 669 P + + LL E + ++ K V G + + R +E Sbjct: 542 NCPITVQNL--LLGYFPFMAFLEETKIPYKLSPKTAVLEGKCKGLSICVSGFRDSNLEEV 599 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQ 719 +T G + + +S+KT ++V D SK+ KA+ LG+ I++ E+F Sbjct: 600 ITNEGGKIVSGVSKKTTHLVVKDKSANSSKISKAKLLGIPILSIEEFCDFFN 651 >gi|218678540|ref|ZP_03526437.1| NAD-dependent DNA ligase LigA [Rhizobium etli CIAT 894] Length = 274 Score = 224 bits (571), Expect = 4e-56, Method: Composition-based stats. Identities = 130/274 (47%), Positives = 188/274 (68%) Query: 399 DRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458 D V+V+RAG+VIP+++D+++ +R +A + FP CP+C S VR++N KTGK+ + RC Sbjct: 1 DTVIVQRAGDVIPQILDVVMEKRTAEAGSYEFPRTCPVCGSHAVREVNEKTGKMDSVRRC 60 Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518 TGG C AQ E LKHFVSR+AF+IEGLG +Q+DFFF++EDP+ IR DIFTL++RQQ Sbjct: 61 TGGFICRAQATEHLKHFVSRNAFDIEGLGSKQIDFFFENEDPSLQIRTAPDIFTLEKRQQ 120 Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578 S TK+ENI GFG VSV LY +IN+RR+I+L RFI++LGIRHVG A+ LA+ Y +Y+ Sbjct: 121 QSLTKLENIDGFGKVSVGKLYAAINERRSIALHRFIYALGIRHVGETTAKLLARSYNTYE 180 Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638 FA + + + W L + +G+++A+A+VEFY+ PRNI + L+ EV+P+ Sbjct: 181 AFATAMKEAAPLSGEAWNDLNAIEGIGEVVARAMVEFYKEPRNIEVINRLIGEVTPAEAE 240 Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 S + K +VFTG+L+K R +A+ Sbjct: 241 QPVTTGSPVAGKTVVFTGSLEKFTRDEAKARAES 274 >gi|257439787|ref|ZP_05615542.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165] gi|257197807|gb|EEU96091.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165] Length = 209 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 74/216 (34%), Positives = 103/216 (47%), Gaps = 9/216 (4%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + +EQARK L I ++ YY P + D EYDAL R A+ FP L + Sbjct: 1 MELEQARKRAEELRVIIERNNRLYYDQDAPELEDFEYDALTRELKALEAEFPQLVTA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P K+GG + KVTH++ SL ++ ++LR F R+ + +E Sbjct: 58 NSPTQKVGGTPSGRFAKVTHAVKMESLLDAFSFDELRDFDRRVRE-----AGIEPEYVVE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG ++ YE G V A+ RGDG GEDV+A ++AI IP+ L PE +EVRGEV Sbjct: 113 IKIDGLSCSLEYENGVLVRASTRGDGVVGEDVTANVKAIKRIPKTLKNA-PEYLEVRGEV 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL 227 Y+ + F L E G P + Sbjct: 172 YMPHDAFQHLCAEQELQGAAPLQKSAQCCRRVSASE 207 >gi|310831452|ref|YP_003970095.1| putative NAD-dependent DNA ligase [Cafeteria roenbergensis virus BV-PW1] gi|309386636|gb|ADO67496.1| putative NAD-dependent DNA ligase [Cafeteria roenbergensis virus BV-PW1] Length = 651 Score = 223 bits (568), Expect = 9e-56, Method: Composition-based stats. Identities = 128/722 (17%), Positives = 263/722 (36%), Gaps = 117/722 (16%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ LE+ + YY S PI+ D ++D L D + P + L ++G Sbjct: 22 KIKELEKLLEQASKSYYNTSNPILTDDQFDIL---LDFLNKRNP-------KSTFLKQVG 71 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIE-DLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 + KV S++KI L K++ + S + L K+DG Sbjct: 72 APIKN---KVELDYYLGSMDKIKPPSTKLEKWLKK----------YSAPYYLSDKLDGIS 118 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---------IPEIIEVRG 189 + Y+ K + RG G D++ I+ + + +I +RG Sbjct: 119 GLVVYQNNK-IKLFTRGTATEGMDITTLIKYLNLPSYNVVETKLKKLGLKGHKNLIALRG 177 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 E+ +SK++F N + N RN +G++ + +++ L+F ++ + Sbjct: 178 EIIMSKSNFSKHNK--------EFKNARNLVAGLVNSKHKKPSLSQDLDFVLYQVVDPVI 229 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 F E + ++ LGF + +K ++ Y++DG++ ++ Sbjct: 230 TFV----EQMDLIKELGFKNVYYQK--EKELNYNVLSQILKQRKNNSDYEVDGIIVTNNK 283 Query: 309 FSLQKQLGERARSPRWMISHKF--AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++P + + K E + + ++ I ++G + P + PV + G Sbjct: 284 LHKL----NIGKNPEFAFAFKELVEETFKESTVKHVEWNISKSGKIMPTVVILPVEMEGV 339 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ T N Y+K + G ++ + R+G+VIP +V +I Sbjct: 340 TVSRVTAFNAKYVK-----------ENGLGPGSKIQITRSGDVIPYIVKVIKKV------ 382 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 S ++ K R + Sbjct: 383 ------------SPEFPKIDYKWTDSGVDIRTLDQSDEQQIRQIYFFFKTLDTK------ 424 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 + + T+++ + + G D S TN Y+ + + + Sbjct: 425 ---------RFGLKLIVKMFENNFNTIEKILKMDKDDFIKLDGVKDKSATNFYNELQRIK 475 Query: 547 NISLERFIFSLGIR----HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + + L + G++ A+ + Y F + I N+ L +P Sbjct: 476 STNFPLEKLILATNSLGDNFGSKKAKLIFDNYPDI--FNKNIIKNEKIKNEWILKFKNIP 533 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKI 661 + A+ I+ + ++ L K + +I + K VS++ ++ K V TG Sbjct: 534 GIEQKTAEQIIN--KWDVLQKNIKWLEKYFTININKSSKQVSNKNLKYIKWVLTG----F 587 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-----NPGSKLEKAQQLGVKIMNEEQFLF 716 + + Q + ++G VS +S+ TDI++V D NP K+ KA+ LG+KI+ + + Sbjct: 588 RDKELQNKIEEMGGTVSNSVSKNTDIVVVKDSSVLNNPTGKVLKAKDLGIKIIEKSKVSK 647 Query: 717 LL 718 L+ Sbjct: 648 LI 649 >gi|326392616|ref|ZP_08213952.1| DNA ligase (NAD(+)) [Thermoanaerobacter ethanolicus JW 200] gi|325991342|gb|EGD49998.1| DNA ligase (NAD(+)) [Thermoanaerobacter ethanolicus JW 200] Length = 210 Score = 222 bits (566), Expect = 2e-55, Method: Composition-based stats. Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 10/197 (5%) Query: 29 SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88 +YH+ YY +P I D EYD L R + +P+ P+ P ++GGE Sbjct: 20 NYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEFK---TPDSPSQRVGGEPLKEFEP 76 Query: 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148 TH +P LSL ++ +LR F R+ + + +E KIDG + + YE G F Sbjct: 77 FTHVVPMLSLANAFSEGELRDFDRRVREAVG-----DVEYVVELKIDGLSVELIYENGIF 131 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208 + RGDG GE+V+ ++ I +IP L ++ + VRGEV++ + F LN+E + Sbjct: 132 TVGSTRGDGIVGENVTQNLKTIKSIPLRLKDDVS--LVVRGEVFMPRTSFEKLNEEREKI 189 Query: 209 GRKPYANPRNAASGILR 225 KP+ + S + Sbjct: 190 RGKPFCKSQKCCSRFFK 206 >gi|213419664|ref|ZP_03352730.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 190 Score = 221 bits (564), Expect = 3e-55, Method: Composition-based stats. Identities = 57/198 (28%), Positives = 100/198 (50%), Gaps = 13/198 (6%) Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583 + + G S N+ +++ K + + RF+++LGIR VG A LA Y+ + + Sbjct: 1 MTGLDRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAA 60 Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS---PSIGRHE 640 L +VP VG ++A + F+ N + LL E + + Sbjct: 61 T----------IDELQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINA 110 Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700 + + S K +V TG+L ++ R A+ + LGA V+ +S+KTD++I G+ GSKL K Sbjct: 111 QEIDSPFAGKTVVLTGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAK 170 Query: 701 AQQLGVKIMNEEQFLFLL 718 AQ+LG+ +++E + + LL Sbjct: 171 AQELGITVIDEAEMIRLL 188 >gi|312601241|gb|ADQ90496.1| DNA ligase [Mycoplasma hyopneumoniae 168] Length = 559 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 173/602 (28%), Positives = 280/602 (46%), Gaps = 68/602 (11%) Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 + A RGDG GE+V I +N E +EVRGE+YI + F +L Sbjct: 1 MIKALTRGDGVFGENVLVNALKINDEFIPKKINYLEDLEVRGEIYIDNSTFASLQ----- 55 Query: 208 VGRKPYANPRNAASGILRRLNPTD---------------ITRYLNFFVHGLGKTSEIFAK 252 + K + NPRNAASGILRR RYL F + L + Sbjct: 56 LETKKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFRYLKSFFYTLVNPEKHKIN 115 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q++ + +R LGF VN ++ + + ++ + +K R L Y+IDG+V KV+EFS+ Sbjct: 116 SQFDSINFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDFLNYNIDGVVVKVNEFSIY 175 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG ++ P I+ KF + A T+LL I IGRTG +T A++EPV + G+ I++A Sbjct: 176 EKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTYNAKIEPVTLAGSKISSAI 235 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 L N YI+ L + + V +K+AGE+IP+++ + N + FS Sbjct: 236 LPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQIIGSVHNYPKTN---FSVVK 281 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S +V + + C L+++ HF S++A NIE L ++++ Sbjct: 282 NCPKCNSELVNSESGLD-------QFCQNQFCPEIILQKIVHFCSKNALNIESLAQKRIK 334 Query: 493 FFFKSEDPAFSIRIPADIFTLQRR----------QQTSTTKIENILGFGDVSVTNLYDSI 542 F + I DIF L+ + + TK S+ L + + Sbjct: 335 KFLEK----GLISSACDIFYLKDKLELIYERLSNKNQLLTKQNASQSMQIKSIMKLLNEV 390 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 K +NI R IF LGIR+VG + A+ L++Y + N D+ L Sbjct: 391 EKAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNISELR----------NLDFNLLKNQY 440 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 G +I +++++++ N +N + L N S+ +G L K Sbjct: 441 DFGPVIIESLIDYFNNQKNSEQLNCLETVGFSFKTTFLTNQSNSWA--SFAISGKLSK-P 497 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 R + + + GA L++KTD +++G + GSK+EKA++ G+KI+NE QF L++ Sbjct: 498 RDEYVRIIEESGASFHESLTKKTDFLLLGQSAGSKIEKAKKAGIKIINEVQFFDLIKNSK 557 Query: 723 TT 724 T Sbjct: 558 KT 559 >gi|153831338|ref|ZP_01984005.1| DNA ligase [Vibrio cholerae 623-39] gi|148873180|gb|EDL71315.1| DNA ligase [Vibrio cholerae 623-39] Length = 159 Score = 221 bits (563), Expect = 4e-55, Method: Composition-based stats. Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 5/161 (3%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + L+ L + + H YY P I D+EYD L R + A P+L + Sbjct: 1 MSDVAQRLTELRKTLHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELM---SSDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + V H IP LSL+ ++ +L F R+ ++ F EPK Sbjct: 58 PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 +DG +++ YE G AA RGDG +GE+++ +R I +IP Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIP 156 >gi|48249475|gb|AAT40982.1| putative DNA ligase [Xenorhabdus nematophila] Length = 168 Score = 220 bits (560), Expect = 8e-55, Method: Composition-based stats. Identities = 54/175 (30%), Positives = 93/175 (53%), Gaps = 14/175 (8%) Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RFI+SLGIR VG A +L ++ + + D +LI V VG I+A Sbjct: 4 FARFIYSLGIREVGETTAANLVSHFGTLEKLQAA----------DTEALIAVQDVGGIVA 53 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHK 665 +V F+ P N ++ L+ + E + K +V TG+L ++ R + Sbjct: 54 SHVVNFFNEPHNQAVIDDLVNNIGIHWESAESPNLGEIDGPFAGKTVVLTGSLNRLSRDE 113 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LGA V+ +S+KTD++I G+ GSKL KA +LG+ +++E++ + LL++ Sbjct: 114 AKDKLAALGAKVTGSVSKKTDLVIAGEAAGSKLAKANELGIPVIDEDEMIRLLRE 168 >gi|298486340|ref|ZP_07004403.1| DNA ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159347|gb|EFI00405.1| DNA ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 628 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 172/482 (35%), Positives = 260/482 (53%), Gaps = 43/482 (8%) Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P+++EVRGEV++SK F LN + +G K +ANPRNAA+G LR+L+ R L F Sbjct: 13 WPDVLEVRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFC 72 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 +GLG+TS A +L+ ++ G PV+ ++ AN + YY ++ R TL Y+I Sbjct: 73 CYGLGQTSAEIADTHIGVLETLKKWGMPVSRELKLANGVEECLDYYRDIGERRLTLSYEI 132 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V+KV+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+ Sbjct: 133 DGVVFKVNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLK 192 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++ Sbjct: 193 PVKVAGVMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAE 241 Query: 420 ERHPDAQPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473 R +A+ P CP+C S V R +T A +RC G LAC AQ + + Sbjct: 242 RRPENARAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAII 301 Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533 H+VSR A +IEGLG + ++ + I PAD++ L+ Q + GF ++ Sbjct: 302 HYVSRRAMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEI 351 Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593 S L +I R +L RFI++LGI VG E A+ LA+ S Q + + Sbjct: 352 SSNKLLKAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV------ 405 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIE 648 L +P VG +A I F+++ N ++ALL E + + S+ +E Sbjct: 406 ----LTYLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLKLQDQGELGAEFAASTTLE 461 Query: 649 NK 650 Sbjct: 462 GL 463 Score = 170 bits (431), Expect = 6e-40, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 103/257 (40%), Gaps = 20/257 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R +++ + + + D + F + + G Sbjct: 387 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLKL 444 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + +LE I L I VG A+ LA + + + D Sbjct: 445 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISA----------D 494 Query: 595 WLSLIR-VPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649 WL + + +P + A+++ +F+ + A+EA LK+ +K V + Sbjct: 495 WLDMRQTLP---EKQAKSVRDFFDESAHAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 551 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 + V TG+L+++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ ++ Sbjct: 552 QTWVLTGSLERMSRDVAKEKLETLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 611 Query: 710 NEEQFLFLLQQYNTTLR 726 +E+ L L + + Sbjct: 612 DEDALLKRLTELGVAVD 628 >gi|218509214|ref|ZP_03507092.1| NAD-dependent DNA ligase LigA [Rhizobium etli Brasil 5] Length = 202 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 93/200 (46%), Positives = 132/200 (66%), Gaps = 3/200 (1%) Query: 26 QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS 85 +EI++HD Y + I D++YDALKRR DA+ FP+L R + P +G +++ Sbjct: 6 KEIAHHDALYQGKDQREISDADYDALKRRNDALEVRFPELIRE---DSPSRHVGAAPSVT 62 Query: 86 LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEK 145 V H+ P LSL+ ++ ED++ F+ +YRF + D SI FT EPKIDG ++IRYE Sbjct: 63 FSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAFTAEPKIDGLSMSIRYEN 122 Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205 G+ V AA RGDG +GE+V+A IR I IP L +P ++E+RGEVY++K+DFLALN +M Sbjct: 123 GRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIRGEVYMAKSDFLALNRQM 182 Query: 206 IAVGRKPYANPRNAASGILR 225 A G++ Y NPRN A+G LR Sbjct: 183 EAEGKQTYVNPRNTAAGSLR 202 >gi|148244425|ref|YP_001219119.1| DNA ligase (NAD+) [Candidatus Vesicomyosocius okutanii HA] gi|166216276|sp|A5CXB8|DNLJ_VESOH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146326252|dbj|BAF61395.1| DNA ligase (NAD+) [Candidatus Vesicomyosocius okutanii HA] Length = 632 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 140/690 (20%), Positives = 258/690 (37%), Gaps = 102/690 (14%) Query: 36 YQYSKPIILDSEYDALK-RRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 Y+ KPII + +YD + P E P + E KV Sbjct: 36 YRSGKPIISNEDYDFIYLATLKNKEPNNPLFKSIE----PEGRAFAE-----EKVLLPEL 86 Query: 95 TLSLEKIWNIEDLRKFITRIYRF--WQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152 LS++K ++ ++ K+I R+ + D N+I PK+DG ++ G Sbjct: 87 MLSIDKAYSWNEMSKWIERLEKSGMLIGLDLNAIQIKATPKLDGFAG---FDDGN--RLY 141 Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 RGDG G D+S + + GE+ + K+ F Sbjct: 142 TRGDGKKGSDISRVFKRGLCV-----FKDSGRGLGAGEIVVKKSYFEKYLVH-------S 189 Query: 213 YANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 + PRN S +++ + + L M + + V+ + Sbjct: 190 FEYPRNFQSSLIKEKALDEQAQKAIIDKGALFVPFIKLPIWSGSMTELVAKFEEIVSQVL 249 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 +D+DG+V++V L+ Q+G + RW I+ K + Sbjct: 250 VMV--------------------DFDVDGVVFEVINIDLKTQMGANRKFHRWQIAFKENK 289 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 ++L++ Q+GR+G +TPVA +EP + GA I T H+ + Sbjct: 290 DIVQVKVLNVMPQVGRSGKITPVAEVEPTLLSGATIVRVTGHHY-----------GLVKE 338 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 + + +G V + R+G VIPK++ ++ P P C C +V + + Sbjct: 339 QGLGIGSVVELTRSGLVIPKIISVLKP------MPVDIPDNCLSCGMPLVWESD------ 386 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512 C C AQ + R+ +F A N +G G ++ + IR + I+T Sbjct: 387 --FLVCVNHKNCPAQIIGRITYFFKVLANN-DGFGIATVEKLYAHN-----IRSVSQIYT 438 Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572 L + + G S + I RF+ + G+ +G +L K Sbjct: 439 LNVERLMAIGF-----GEKTSINLISQLSRSISEKIEDWRFLAAFGMHRMGLGNCENLLK 493 Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ---NPRNICAVEALL 629 Y F + + + ++ AQ IV+ + N + Sbjct: 494 SYRLNDIF-----------DLTLEQITNIDGFAELTAQVIVQGLVSIVDEYNQ-IYQYNF 541 Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 + + + + E+ +K++VFTG + R++ +++ +G VS +S K D ++ Sbjct: 542 NLDTTVFTKDLQTLMHELFDKRIVFTGKM-NCPRNEMKKHAKLVGIKVSTTISTKIDYLV 600 Query: 690 VGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 +G G K++ A++LGV +M E +L + Sbjct: 601 IGSRVGQKKIQNAEKLGVVVMTEADYLSKI 630 >gi|226327976|ref|ZP_03803494.1| hypothetical protein PROPEN_01867 [Proteus penneri ATCC 35198] gi|225203680|gb|EEG86034.1| hypothetical protein PROPEN_01867 [Proteus penneri ATCC 35198] Length = 186 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 57/196 (29%), Positives = 102/196 (52%), Gaps = 14/196 (7%) Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 L +++K ++ + RFI++LGIR VG A L ++ + + Sbjct: 1 MKNQQKKLITALDKAKSTTFARFIYALGIREVGEATASGLTAHFSTLEALRNA------- 53 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSE 646 D +L VP VGDI+A+ +V F+Q N ++ L+ + + + + Sbjct: 54 ---DVEALKLVPDVGDIVAKHVVNFFQEEHNRTVIDQLINDAGITWQAPIIVTHEVGENP 110 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 K +V TG+L ++ R +A++ + LGA VS +S+KTD++I G+ GSKL KA +LG+ Sbjct: 111 FAGKTVVLTGSLSQLTRDEAKDRLVALGAKVSGSVSKKTDMVIAGEAAGSKLVKANELGI 170 Query: 707 KIMNEEQFLFLLQQYN 722 +++E++ + LL Q Sbjct: 171 TVIDEDEMIRLLDQSK 186 >gi|225013054|ref|ZP_03703469.1| DNA ligase (NAD(+)) [Flavobacteria bacterium MS024-2A] gi|225002782|gb|EEG40763.1| DNA ligase (NAD(+)) [Flavobacteria bacterium MS024-2A] Length = 183 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 51/173 (29%), Positives = 89/173 (51%), Gaps = 5/173 (2%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ R ++ +L + + H+ YY PII D E+D L ++ + + PDL D N Sbjct: 1 MQEIRNKIEALREVLHDHNHRYYILDDPIISDYEFDQLLQQLNELEVQNPDLT---DLNS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + S V H P SL ++ E+L ++ R+ + ++ I +T E K Sbjct: 58 PTRRVGGGVTKSFETVPHKYPMYSLSNTYSKEELMQWEERLRKSLGEE--TQIEYTCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 DG I++ YE G + A RGDG G++++ +R I T+P L + P+ Sbjct: 116 FDGASISLTYENGILIKAITRGDGLQGDNITTNVRTIKTVPLKLKSDFPKFFV 168 >gi|115380146|ref|ZP_01467179.1| hypothetical protein STIAU_7665 [Stigmatella aurantiaca DW4/3-1] gi|115362851|gb|EAU62053.1| hypothetical protein STIAU_7665 [Stigmatella aurantiaca DW4/3-1] Length = 150 Score = 207 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 50/144 (34%), Positives = 81/144 (56%), Gaps = 1/144 (0%) Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635 + + A+ D +L RV VG +AQ + F+Q P+N A++ALL + Sbjct: 3 TAKALAEAFPEAPLLYTADMEALTRVKDVGPTMAQVLHAFFQEPQNRAAIDALLAAGV-T 61 Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695 + N K +V TG + + R +A+E + + G VS +SRKTD ++ G++ G Sbjct: 62 PAPPQVNTGGPFAGKTVVLTGGMTGMSRDQAKEEIERRGGKVSGSVSRKTDFVVAGEDAG 121 Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719 SKL+KAQ+LGV++++E+ FL LLQ Sbjct: 122 SKLKKAQELGVRVLDEQAFLKLLQ 145 >gi|148989162|ref|ZP_01820552.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP6-BS73] gi|147925385|gb|EDK76463.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP6-BS73] Length = 251 Score = 203 bits (517), Expect = 6e-50, Method: Composition-based stats. Identities = 78/268 (29%), Positives = 134/268 (50%), Gaps = 22/268 (8%) Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510 + A RC C AQ +E L HF SRDA NI GLG ++ F A ++ ADI Sbjct: 5 EDEVALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADI 59 Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 + LQ + G + S LY +I + S E+ +F LGIRHVG++ ++ L Sbjct: 60 YRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQLL 113 Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 +Y+ S +N Q D + + +G +IA+++ ++ + + L + Sbjct: 114 LQYFHSIENLYQA----------DSEEVASIESLGGVIAKSLQTYFAAEGSEILLRELKE 163 Query: 631 EVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 + + + +V TG L++++R +A+ + LGA V+ +S+KTD+++ Sbjct: 164 TGVNLNYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTDLVV 223 Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 VG + GSKL+KAQ+LG+++ +E L Sbjct: 224 VGADAGSKLQKAQELGIQVRDEAWLESL 251 >gi|261886171|ref|ZP_06010210.1| NAD-dependent DNA ligase LigA [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 292 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 96/303 (31%), Positives = 146/303 (48%), Gaps = 14/303 (4%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + ++ YY P+ D EYD L PDL S P N+ Sbjct: 3 KNDYLKAVDSLNLWAKAYYTDDSPMASDDEYDKLYNAVVQFEKENPDLKLSY---SPTNR 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 IGGE+ K++H S+E I++ +L +I+R D F EPK DG Sbjct: 60 IGGEILDEFKKISHIEKMWSMEDIFSDSELVAWISR-------GDKTDCEFFAEPKFDGA 112 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G + AA RGDG GEDV+ + I ++P L ++ + IE+RGEV I+K+D Sbjct: 113 SLNLLYENGNLISAATRGDGSVGEDVTNNAKVISSVP--LQIDYKDKIEIRGEVVITKDD 170 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N E P ANPRNAA+G LR+L+ R L F+ G+G + + + Sbjct: 171 FELINIERSKNSEPPLANPRNAAAGSLRQLDNGIVKQRKLKFYPWGVG-ENSLKFNKHSQ 229 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++ +R LGF +N + + Y E+ S+R P +DG+V +V++ S QLG Sbjct: 230 IMDFVRSLGFLHDNFCKVIRGIDELKIAYKELLSVRELKPILMDGMVIRVNDLSKANQLG 289 Query: 317 ERA 319 Sbjct: 290 YTR 292 >gi|255023537|ref|ZP_05295523.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J1-208] Length = 419 Score = 201 bits (510), Expect = 5e-49, Method: Composition-based stats. Identities = 170/459 (37%), Positives = 251/459 (54%), Gaps = 41/459 (8%) Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210 A RGDG GED++A +R I +IP L + IEVRGE ++ K F LN+ G+ Sbjct: 1 GATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSFQKLNEIREEEGQ 58 Query: 211 KPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVN 269 +ANPRNAA+G LR+L+ +R L+ F++ + E+ + L + LG VN Sbjct: 59 MLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSAGLDMLETLGLKVN 118 Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329 R N+ + +Y +E R+ L YDIDG+V K++ Q+Q+G +SPRW I++K Sbjct: 119 KERRLCNSLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNNLEQQRQMGTTVKSPRWSIAYK 178 Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389 F ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNED + Sbjct: 179 FPAEEVPTKLLDIELNVGRTGVVTPTAVLEPVRVAGTTVSRASLHNED-----------L 227 Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449 +DIR+GD VL+K+AG++IP+V+ I ER +PF P CP C S +VR Sbjct: 228 ITEKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEKPFHMPKNCPTCDSELVRLEEE-- 285 Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509 A RC C AQ E L HFVSR+A NI+GLG++ + F I+ AD Sbjct: 286 ----VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFSQ----HLIKDVAD 336 Query: 510 IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569 +F L + K+ + G+ SVTNL SI + SLE+ +F LGIRHVGA+ A+S Sbjct: 337 LFFLSKE------KLLELERMGEKSVTNLLASIEASKQNSLEKLLFGLGIRHVGAKAAKS 390 Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 LA ++ + N D +L + +G+ + Sbjct: 391 LAIHFDTMDNL----------KVADKETLTSINDIGEKM 419 >gi|145640786|ref|ZP_01796369.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021] gi|145274712|gb|EDK14575.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.4-21] Length = 150 Score = 200 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 84/158 (53%), Gaps = 11/158 (6%) Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 +G A +LA ++ + + L +VP VG+++A I F++ N Sbjct: 1 MGEATALNLANHFKTLDALKDA----------NLEELQQVPDVGEVVANRIFIFWREAHN 50 Query: 622 ICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680 + VE L+ + ++ + ++K +V TGTL ++ R++A+ + QLGA VS Sbjct: 51 VAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKALLQQLGAKVSGS 110 Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +S KTD +I GD GSKL KAQ+L + ++ EE+FL + Sbjct: 111 VSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 148 >gi|34764322|ref|ZP_00145154.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27885904|gb|EAA23248.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 455 Score = 196 bits (499), Expect = 8e-48, Method: Composition-based stats. Identities = 141/475 (29%), Positives = 236/475 (49%), Gaps = 41/475 (8%) Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGL 243 +E+RGEV + +F LN+E + G + +ANPRNAASG LR+L+ + L+ + + L Sbjct: 1 MEIRGEVVLPLANFEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKERGLDAYFYFL 60 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 + ++ K E ++ + +G T I + + R LPY+ DGLV Sbjct: 61 VEADKLGLKSHSESIKFLESMGIKTTGIFELLETSKDIEKRIDYWEKERENLPYETDGLV 120 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KVDE +L ++G +++PRW I++KF Q ST L + Q+GRTG LTPVA L+ V + Sbjct: 121 IKVDEINLWNEIGYTSKTPRWAIAYKFPAHQVSTILNGVTWQVGRTGKLTPVAELQEVEL 180 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G+ + A+LHN I+ +DIR+GDRV +++A E+IP+VV I +R Sbjct: 181 SGSKVKRASLHNISEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKSIKEDRTG 229 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + + P CP+C ++ R+ K C A+ +++FVSRDA NI Sbjct: 230 NEKVIEEPINCPVCNHKLEREEGLVDIK-------CVNEECPAKVQGEIEYFVSRDALNI 282 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 GLG + ++ F I+ DI+ L+ ++ +ENI G S+ NL +SI Sbjct: 283 MGLGSKIVEKFID----LGYIKTVVDIYDLKNHRE----ALENIDKMGKRSIENLLNSIE 334 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + +N ++ I++LGI +G ++ LAK + N + L + Sbjct: 335 ESKNRDYDKVIYALGIAEIGKVTSKILAKASKNIDKLM----------NMTFEELTSIEG 384 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVF 654 +G I A I+ F++ +N +E+L ++ + + N++ KK + Sbjct: 385 IGXIAANEIIAFFKKEKNQKIIESLKEKGLKFEIKESETNVQNINPNFAXKKFLI 439 >gi|212374934|pdb|3BAC|A Chain A, Structural Basis For The Inhibition Of Bacterial Nad+ Dependent Dna Ligase Length = 270 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 92/265 (34%), Positives = 149/265 (56%), Gaps = 4/265 (1%) Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + ++ H IP LSL+ ++ + F+ RI + F EPK+DG + Sbjct: 1 AKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPKLDGLAV 59 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198 +I Y G+ AA RGDG +GED++A IR I +P ++L+ N P +EVRGEV++ F Sbjct: 60 SILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHAGF 119 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF-AKGQYE 256 LN + K +ANPRNAA+G LR+L+P ++ +G+G + Y Sbjct: 120 ERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVGLPTTHYA 179 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ +LQ +LG Sbjct: 180 RLQWLKSIGIPVNPEIRLCNGADEVLDFYQDIQNKRSSLGYDIDGTVLKINDIALQNELG 239 Query: 317 ERARSPRWMISHKFAEKQASTRLLD 341 +++PRW I++KF ++ T L D Sbjct: 240 FISKAPRWAIAYKFPAQEELTLLND 264 >gi|167950972|ref|ZP_02538046.1| DNA ligase, NAD-dependent [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 256 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 92/223 (41%), Gaps = 13/223 (5%) Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL-----ERFIFSL 557 R D+ L ++ I G G + + D++ ++ + Sbjct: 31 LARHFRDLQPLMTAERDDFIHDSGIKGVGASTAQAICDALAGPLPAEPLAGGLADWLAGM 90 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 +R + +A L++ + S + Q ++ V VG I+A IV F++ Sbjct: 91 NVRGLNRAVAERLSERFGSLEALRQATPELLRREQRSL-----VEGVGPIVADHIVTFFR 145 Query: 618 NPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 P N +E L + E + + K +V TGTL + R + + LG Sbjct: 146 QPHNQEVIEKLRQVGVNWEEEAPPETPAEAPLLGKTVVLTGTLSR-PRSAIKAELQALGG 204 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 V+ +S+ TD +I G GSKL KAQQLGV+I++E LL Sbjct: 205 QVTGSVSKNTDYLIAGAEAGSKLSKAQQLGVEILDEAGLARLL 247 Score = 43.2 bits (100), Expect = 0.18, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 7/77 (9%) Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + + SL RF+F+LGIR VG A +LA+++ Q + H++ + Sbjct: 4 QRSKQTSLARFLFALGIREVGDATAAALARHFRDLQPLMTAERDDFIHDSG-------IK 56 Query: 603 LVGDIIAQAIVEFYQNP 619 VG AQAI + P Sbjct: 57 GVGASTAQAICDALAGP 73 >gi|237756712|ref|ZP_04585213.1| DNA ligase [Sulfurihydrogenibium yellowstonense SS-5] gi|237691122|gb|EEP60229.1| DNA ligase [Sulfurihydrogenibium yellowstonense SS-5] Length = 215 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 115/223 (51%), Gaps = 18/223 (8%) Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 +R DI+ L + I+NI GFG SV NL ++I + + L R I+ LGIR+V Sbjct: 10 LVRTIPDIYRL------NYNLIKNIPGFGPKSVENLKNAIEESKKRPLYRLIYGLGIRYV 63 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 G A++LA + LI++P VGD +A I F+ N +N+ Sbjct: 64 GEVTAKTLASAVKCIDDLKDFT----------ITDLIKLPDVGDKVASEIYNFFHNQQNL 113 Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 ++ L + E+ ++ VFTGTL+ R KA+E V LG V +S Sbjct: 114 KMIQELRDLGVKTCHEEEEKK-GKLAGLNFVFTGTLKCCSREKAKEIVESLGGNVLDTVS 172 Query: 683 RKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQYNTT 724 +K ++VG+ PGSKL+KAQ+LG VKI+NEE+FL L+ N Sbjct: 173 KKVHYLVVGEEPGSKLQKAQKLGTVKIINEEEFLKLIGGENAE 215 >gi|257484999|ref|ZP_05639040.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 181 Score = 193 bits (491), Expect = 7e-47, Method: Composition-based stats. Identities = 62/184 (33%), Positives = 94/184 (51%), Gaps = 10/184 (5%) Query: 48 YDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDL 107 YD L A+ P L P+ P ++G + +V H +P LSL + D+ Sbjct: 1 YDRLFHELKALEAENPHLV---TPDSPTQRVGSAALSAFTQVRHEMPMLSLGNAFEESDM 57 Query: 108 RKFITRIYRFWQKKDDN------SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGE 161 +F R+ + + ++ EPK+DG +++ Y G V A RGDG +GE Sbjct: 58 LEFDRRVTEGLDLPAGDLFGAGSKVQYSCEPKLDGLAVSLLYRDGALVCGATRGDGTTGE 117 Query: 162 DVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAA 220 D+S +R + IP L P+++EVRGEV++SK F LN + +G K +ANPRNAA Sbjct: 118 DISVNVRTVRNIPLKLKGKGWPDVLEVRGEVFMSKAGFERLNASQLEIGGKTFANPRNAA 177 Query: 221 SGIL 224 +G L Sbjct: 178 AGSL 181 >gi|15078917|ref|NP_149668.1| 205R [Invertebrate iridescent virus 6] gi|82012211|sp|Q91FW5|VF205_IIV6 RecName: Full=Putative DNA ligase 205R gi|15042287|gb|AAK82067.1|AF303741_205 205R [Invertebrate iridescent virus 6] Length = 615 Score = 193 bits (491), Expect = 7e-47, Method: Composition-based stats. Identities = 123/694 (17%), Positives = 253/694 (36%), Gaps = 113/694 (16%) Query: 29 SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88 D Y+ K I+ D+EYD L + +G +S K Sbjct: 26 EKADHFYFNTEKEILTDNEYDILAEQLQ------------------STNVGCSPLIS--K 65 Query: 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148 + SL+K++N ++L +I ++ S + ++ K+DG I + K Sbjct: 66 TDLPLWMGSLDKVYNDKELNLWIKKV---------ASDKYIIQCKLDGVSCLIINKDNKL 116 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208 A RG+G G D+S I+ + +P I +R E+ I K F + Sbjct: 117 -KAYTRGNGKVGTDISHLIKYF-----IKDKCLPNNIALRCEIIIKKETFNQKYKHAFSN 170 Query: 209 GRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268 R + N + D+ ++ + Q E+++++ Sbjct: 171 PRSFVSGVVNRKQENIVISELNDLCLIAYELINFPVNEYQKNILTQIEIIEQL--NFIQF 228 Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 N +N F + N K +++ +++DGLV + ++ G P+ I+ Sbjct: 229 VNFKTISNEFLTQKALSNLFKEMKNNSLFEMDGLVILANTPYIRVTEGN----PKHSIAF 284 Query: 329 KFA-EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387 K + ++ I+ +G+TG+ TP + P I G ++ T N +Y+ Sbjct: 285 KVRGDNVKEAKVTFIEWNVGKTGVFTPKVHIVPTEINGTTVSCFTGFNANYL-------- 336 Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447 + I G +LV RAG+ IP+++ + + + + C Sbjct: 337 ---IEKGIGEGAIILVTRAGDAIPQIIGVKQTGVLTFPKDYEWKGDCR------------ 381 Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507 + + ++++ HFV ++ +I + + ++ + + Sbjct: 382 ----------IVEKIESKERIIKQILHFV--ESVDIPYIKEATINKLYNNG-----CTSI 424 Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567 L ++ +L FG + +Y+SI K +E+F+ Sbjct: 425 ELFLKLTQKD---------LLLFGPKLSSTIYNSIQKSFEAPIEKFLSGYNAFGDYIGEK 475 Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI--CAV 625 + L Q+ N+ N D + L+ + +G A I + + N + I + Sbjct: 476 KILL--------LLQKYPNLFELENLDAIDLVSIEGIGSKTATQIKQHFINAKLIYNNII 527 Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA-QEYVTQLGAVVSAILSRK 684 + L + + V K+ +GT R + + G V+S +++K Sbjct: 528 QNKLFKGVLHTPSKQNTVELF----KVCVSGT-----RDPLFIQELKNRGFVLSDNITKK 578 Query: 685 TDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLF 716 ++IV ++ +K++KA +G+ I+ E F Sbjct: 579 VKVLIVKNSNEETTKVKKANSVGITILTLEDFKQ 612 >gi|257484998|ref|ZP_05639039.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 572 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 147/431 (34%), Positives = 224/431 (51%), Gaps = 42/431 (9%) Query: 231 DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290 R L F +GLG+TS A +L+ ++ G PV+ ++ AN + YY ++ Sbjct: 8 TANRPLEFCCYGLGQTSAEIADTHIGVLETLKKWGMPVSRELKLANGVEECLDYYRDIGE 67 Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350 R TL Y+IDG+V+KV+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG Sbjct: 68 RRLTLSYEIDGVVFKVNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTG 127 Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410 +TPVARL+PV + G ++ NATLHN D + L + +GD V+++RAG+VI Sbjct: 128 AVTPVARLKPVKVAGVMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVI 176 Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLAC 464 P+VV ++ R +A+ P CP+C S V R +T A +RC G LAC Sbjct: 177 PQVVQVVAERRPENARAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLAC 236 Query: 465 SAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI 524 AQ + + H+VSR A +IEGLG + ++ + I PAD++ L+ Q Sbjct: 237 GAQLKQAIIHYVSRRAMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID---- 288 Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 + GF ++S L +I R +L RFI++LGI VG E A+ LA+ S Q + Sbjct: 289 --LEGFAEISSNKLLKAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQAL 346 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--- 641 + L +P VG +A I F+++ N ++ALL E + + Sbjct: 347 PEV----------LTYLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLKLQDQGELGA 396 Query: 642 --NVSSEIENK 650 S+ +E Sbjct: 397 EFAASTTLEGL 407 Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 105/257 (40%), Gaps = 20/257 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R +++ + + + D + F + + G Sbjct: 331 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLKL 388 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + +LE I L I VG A+ LA + + + D Sbjct: 389 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISA----------D 438 Query: 595 WLSLIR-VPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649 WL + + +P + A+++ +F+ + + A+EA LK+ +K V + Sbjct: 439 WLDMRQTLP---EKQAKSVRDFFDDSAHAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 495 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 + V TG+L+++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ ++ Sbjct: 496 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 555 Query: 710 NEEQFLFLLQQYNTTLR 726 +E+ L L + T+ Sbjct: 556 DEDALLKRLTELGVTVD 572 >gi|6179416|emb|CAB59902.1| DNA ligase [Campylobacter jejuni] Length = 245 Score = 191 bits (484), Expect = 5e-46, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 121/250 (48%), Gaps = 15/250 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +KE + YY+ +P+ D EYDAL R A + P K Sbjct: 3 KKEYLEKVALAASWMRAYYEKDEPLASDEEYDALIRELRAFEEQN---KDEISKDSPTQK 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 I + K+ H S+E +++ +LR + R F +EPK DG Sbjct: 60 IAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE GK V A RGDG GED++ + I IP ++N E IE+RGEV I K+D Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVLEIDNIP--KTINYKEKIEIRGEVVILKDD 169 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N++ + + +ANPRNAASG LR+L+ + R L F+ G+G + + E Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVG-ENTLNFTKHSE 228 Query: 257 MLQKMRCLGF 266 ++Q +R LGF Sbjct: 229 VMQFIRELGF 238 >gi|288575281|ref|ZP_06393611.1| DNA ligase, NAD-dependent [Neisseria mucosa ATCC 25996] gi|288568349|gb|EFC89909.1| DNA ligase, NAD-dependent [Neisseria mucosa ATCC 25996] Length = 446 Score = 190 bits (482), Expect = 8e-46, Method: Composition-based stats. Identities = 106/455 (23%), Positives = 176/455 (38%), Gaps = 141/455 (30%) Query: 395 IRVGDRVLVKRAGEVIPKVVDIIVNERHPDA----------------------------- 425 +RVGD V+V+RAG+VIP+VV +I R Sbjct: 1 MRVGDTVVVRRAGDVIPEVVRVIFERRPMQETAVAVSDDLKQQQDDLFAETPSANQTQSV 60 Query: 426 ---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 +P+ P+ CPIC+S + R+ A RC+GG+ C AQ+ + L HF SR A + Sbjct: 61 PLHKPYRLPTHCPICRSEIEREEGE------AVARCSGGMLCQAQRAQGLIHFASRKAMD 114 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI--------------- 527 I+GLG++Q++ + +R AD++ L ++ + Sbjct: 115 IDGLGQKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKEMADKASSENENGDAETVSG 170 Query: 528 ----------LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577 N+ I + L RF+F+LGIRHVG A++LA+ + S Sbjct: 171 DLSEPNTQTGKKQPTKWAENILAGIEASKTPELARFLFALGIRHVGERTAKTLAQAFGSL 230 Query: 578 QNFAQEINNIIA--------------------HNNDDWLSLIR----------------- 600 ++ + I+A L+ Sbjct: 231 EHVRRAPEPILACLPDIGTVVARSIAHFFAQDAQQAMIDELLAAGVVPQTQTVTIPPARH 290 Query: 601 ---------VPL--VGDIIAQAIVE---------------------FYQNPRNICAVEAL 628 +P + + AQA+ E + +N +E L Sbjct: 291 AEPQHWIARLPGFKISENKAQALWELAGKSIEGLQTDKALPADWQTWRSEAQNTALLENL 350 Query: 629 LKEVSPSIGRHEKNV-----SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 + + +++ + + K V TGTL ++R +AQ + G VS +S+ Sbjct: 351 KTFFAQTSSKNQDEAFSDGLNEAVAGKTFVLTGTLPTLKRDQAQALIEAAGGKVSGSVSK 410 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 KTD ++ G+ GSKLEKA LGV +++EE+ L +L Sbjct: 411 KTDYVVAGEAAGSKLEKANALGVAVLSEEELLAML 445 >gi|46204823|ref|ZP_00049431.2| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Magnetospirillum magnetotacticum MS-1] Length = 277 Score = 190 bits (481), Expect = 1e-45, Method: Composition-based stats. Identities = 126/277 (45%), Positives = 180/277 (64%), Gaps = 2/277 (0%) Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL + E++ +F+ RI RF + D I FT EPKIDG + +RYE GK V AA R Sbjct: 1 MLSLGNAFADEEVEEFVARIRRFLNLQADAPIAFTAEPKIDGLSLFLRYEAGKLVTAATR 60 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 GDG GE+V+A + IP LS +IPE++EVRGEVY+S DF A+N A G+ + Sbjct: 61 GDGEVGENVTANALTVKDIPETLSGADIPEVLEVRGEVYLSHADFAAINARQEAAGKPLF 120 Query: 214 ANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 ANPRNAA+G LR+L+P +R L FF + G+ SE F + Q +L + G PVN Sbjct: 121 ANPRNAAAGSLRQLDPAITASRPLRFFAYAWGEVSEPFTQTQSAVLDRFGGWGLPVNPQT 180 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 + + ++++Y +++ R+ L YDIDG+VYKVD+ Q++LG +R+PRW ++HKFA Sbjct: 181 KLCRSAEEMIAHYRAIEAERADLGYDIDGVVYKVDDLGFQRRLGFVSRAPRWALAHKFAA 240 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 ++A T LL IDI +GRTG L P+ARL+PV +GG +++ Sbjct: 241 QEALTELLAIDINVGRTGSLNPLARLKPVTVGGVVVS 277 >gi|254673677|emb|CBA09272.1| DNA ligase [Neisseria meningitidis alpha275] Length = 414 Score = 189 bits (480), Expect = 1e-45, Method: Composition-based stats. Identities = 94/410 (22%), Positives = 156/410 (38%), Gaps = 105/410 (25%) Query: 404 KRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463 R ++ + + P +P+ P+ CPIC+S + R+ A RC+GG+ Sbjct: 14 HRQDDLFAEAPAANQTQSVPLYKPYRLPTHCPICRSEIEREEGE------AVARCSGGML 67 Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK 523 C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ L + Sbjct: 68 CQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKE 123 Query: 524 IENI---------------------LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 + N+ I + L RF+F+LGIRHV Sbjct: 124 TADKTVAESDQMPSEGSSVGASGKHKKQPTKWAENILAGIESGKTPELARFLFALGIRHV 183 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------------------WLSLIR-- 600 G A++LA+ + + + + ++A D L+ Sbjct: 184 GERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAMIDELLAAG 243 Query: 601 ------------------------VPL--VGDIIAQAIVE-------------------- 614 +P + + AQA+ E Sbjct: 244 VAPQAQAVSLPAAQYAEPQRWIARLPGFKISENKAQALWELAGKSIEGLQTDKSLPADWQ 303 Query: 615 -FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGTLQKIQRHKAQE 668 + P+N +E L + E S + K V TGTL ++R +AQ Sbjct: 304 AWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINEAVAGKTFVLTGTLPTLKRDQAQS 363 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L LL Sbjct: 364 LIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 413 >gi|325474099|gb|EGC77287.1| hypothetical protein HMPREF9353_01637 [Treponema denticola F0402] Length = 437 Score = 188 bits (477), Expect = 3e-45, Method: Composition-based stats. Identities = 106/473 (22%), Positives = 188/473 (39%), Gaps = 68/473 (14%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 K + LE+ I H D YY ++P I D+E+DAL A+ + Sbjct: 4 EKRILDLEKTIKKHQDLYYN-AQPEISDAEFDALWDELKALDPQNKLFFTVPLES----- 57 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 K H IP S EK + + ++ + ++ K+DG Sbjct: 58 -----TDGFAKSEHIIPMGSQEKAADPPSFEAWALKM---------PFKEYIVQYKMDGA 103 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-------SLNIPEIIEVRGE 190 + ++YE+G FV A RGDG G+D++ + + + + + P +R E Sbjct: 104 SLELQYEEGHFVRAVTRGDGKIGDDITENVLKMKGLIKDITVNEGPAYGTKPFSGGIRCE 163 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 V + ++ AN RNAA+G++++ N F + + Sbjct: 164 VIMLRSIHQKYFK--------DKANCRNAANGLMKKKNGELCEHLNLFAYDAVQGSIGNP 215 Query: 251 AKGQYEMLQ------KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 G ++ GF V+ + ++ Y + IR +L YDIDGLV Sbjct: 216 FTGDAPFKTESEKLVWLKEAGFNCVE-VKYCKSIDEVIEYRAHVMDIRPSLDYDIDGLVI 274 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 K D + P I+ KF+ ++A T L +I+ TP+A +EPV + Sbjct: 275 KNDTID---PEDMKRARPEKQIAFKFSLEEAVTVLKEIEWSES-GATYTPIALIEPVRLA 330 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G + A+L N + I+ L ++++G RV+V + GE+IPK+ + N P+ Sbjct: 331 GTTVKRASLANPNIIRAL-----------NLKIGSRVVVTKRGEIIPKIEALAEN--PPN 377 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 + +P C +C S + + ++C R++ ++S Sbjct: 378 VKEIEYPDTCSVCGSPLTNEG---------TRLYCPNMSCPKLIHHRIEKWIS 421 >gi|229593084|ref|YP_002875203.1| NAD-dependent DNA ligase LigB [Pseudomonas fluorescens SBW25] gi|257096558|sp|C3K3F7|LIGB_PSEFS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|229364950|emb|CAY53062.1| putative exported DNA-ligase protein [Pseudomonas fluorescens SBW25] Length = 554 Score = 188 bits (476), Expect = 4e-45, Method: Composition-based stats. Identities = 126/621 (20%), Positives = 227/621 (36%), Gaps = 97/621 (15%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 ++AR +S+L ++I DD Y++ + + D YD ++R FP A + PN P Sbjct: 24 DEARAHVSTLAEQIRQWDDSYHRLGQSPVSDELYDQARQRLAQWHQCFP--APTATPNTP 81 Query: 75 --LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 ++ G + H + LEK+ + + ++ W ++P Sbjct: 82 LASSR-GAQP--------HPVAHTGLEKLLDEHAVDAWLGTRKDVW-----------IQP 121 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG +T+ Y++G+ RGDG G D SA R IP I + L I + ++GE+Y Sbjct: 122 KVDGVAVTLVYQQGRLRQVISRGDGVMGHDWSASARKIPGIVQQLPDPI--DLVLQGELY 179 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 +D N R+ +G++ R + D G+G + + Sbjct: 180 WRLDD--------HVQSASGGLNARSKVAGLMNRKHLGDTDAA------GIGLFVWAWPQ 225 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 G +++ L ++ + +S ++ P + + Sbjct: 226 GPAAFTERLSTLKRWGFTDTQRFSQPIRNISEAAHWRAYWYGHPLPFASDGVVLHQAQHA 285 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + +P W + K+ +A + D+ +IGRTG +TP+ LEPV + I+ + Sbjct: 286 PAERWQVSTPYWAAAWKYPTTKALALVRDVQFKIGRTGRITPMLELEPVRLDDRQISRVS 345 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 DIR GD V + AG+VIP++ ++I+ Sbjct: 346 A-----------GSLKRWQSLDIRPGDHVSISLAGQVIPRLDEVILR------------- 381 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 S DL A C C Q L RL + +G++ Sbjct: 382 ------SSTRADLPVPNPGKFHALSCWQLDPGCEEQLLARLSWLSGNQGLALPHIGRETW 435 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + A I D TL T ++ NI GFGD + + DS + R Sbjct: 436 SVLIQ----AGLIAGFLDWLTL------DTAELANIDGFGDRTRARVVDSFHSARQRPFA 485 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 +++ +LG+ N + ++A + W + + +G A Sbjct: 486 QWLKALGVPPAARN-------------NLEGDWQTLVARDTQAW---LAIDGIGPGRAAQ 529 Query: 612 IVEFYQNPRNICAVEALLKEV 632 + F+++P E L Sbjct: 530 LSAFFRDPHVQALAETLRVAG 550 >gi|15828872|ref|NP_326232.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) (fragment) [Mycoplasma pulmonis UAB CTIP] gi|14089815|emb|CAC13574.1| DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+]) (FRAGMENT) [Mycoplasma pulmonis] Length = 367 Score = 187 bits (475), Expect = 5e-45, Method: Composition-based stats. Identities = 111/397 (27%), Positives = 210/397 (52%), Gaps = 34/397 (8%) Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 K+++ SL LG+ ++ I++KF +K T + DI + +G+TG++T A+L+ V + Sbjct: 2 IKLNDLSLYDLLGKTSKFFHHSIAYKFRKKIVMTTIQDIFVTVGKTGLITYNAKLQEVIL 61 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G+ I ATLHN +YIK + I +GD+V +++AGE+IP+VV ++ + Sbjct: 62 NGSKINAATLHNYEYIKNI-----------KINIGDKVYIEKAGEIIPRVVKLVNPK--N 108 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + FS CP C++++ N ++ L C +++++LK+FVS+D I Sbjct: 109 NHNYFSPIEICPSCKNKLSWSKN-------MLNQFCLNLDCIEKKIQKLKYFVSKDGLEI 161 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 + LG ++++ FF ++ DI+ L+ + + + F + SV L I Sbjct: 162 QELGGKKIELFFAK----GWVKKIEDIYNLK----NNYDDLLKLEKFQEHSVNVLLHKIE 213 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + + + + I +LGI+++G ++A+SL K F + N+++ + ++ L + Sbjct: 214 ESKQVYTWKLIAALGIKNIGKKLAKSLVKII-----FENDQKNLLSLLDFNYDELEKYDE 268 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 G + +++ EF+ N N ++ L + E S+++ENK + TGTL+K R Sbjct: 269 FGSVKIESLKEFFANDENKNLIKFLSENGFEVKLEKEIIQSTKLENKTFLITGTLEK-PR 327 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700 + + Q G ++S+ +S+K D +IVG NPGSK +K Sbjct: 328 DFYKNLIVQNGGLISSSISKKLDYLIVGQNPGSKEKK 364 >gi|117306975|emb|CAL25732.1| hypothetical protein [Bacillus halodurans] Length = 143 Score = 186 bits (473), Expect = 8e-45, Method: Composition-based stats. Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 4/130 (3%) Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEI 647 N LI VP VGDI+A +IV F+++ N +V+ LL+ P + S Sbjct: 1 MNATREELIAVPDVGDIVADSIVSFFEDEVNKMSVQRLLEFGVHPQPIEKPKPVSTDSYF 60 Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 K +V TGTL + R +A + GA V+ +S+KTD++I G+ GSKL KA+QLG+ Sbjct: 61 YGKTVVLTGTLHLMTREEATAKLEACGAKVTGSVSKKTDLVIAGEKAGSKLAKAEQLGIP 120 Query: 708 IM-NEEQFLF 716 ++ +E + + Sbjct: 121 VITDENELVK 130 >gi|167751779|ref|ZP_02423906.1| hypothetical protein ALIPUT_00019 [Alistipes putredinis DSM 17216] gi|167660694|gb|EDS04824.1| hypothetical protein ALIPUT_00019 [Alistipes putredinis DSM 17216] Length = 323 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 21/238 (8%) Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +IEGLG++ ++ F++ + AD++ L+ Q + G+ S N+ Sbjct: 1 MDIEGLGEETVELLFEN----GLLHDIADLYDLRAEQL------ACLPRLGEKSAENIIR 50 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 SI + +R +F+LGIR VG A+ LA ++ + LI Sbjct: 51 SIRGSVEVPFQRVLFALGIRFVGETTAKYLAAHFRTLDAVMHATR----------EELIE 100 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 VG IA AI++++ + N+ +E L K + H+ S + K V TG Sbjct: 101 ADEVGGKIADAIIDYFADAENLRIIERLRKAGLQTEAAHKALESESLAGKNFVITGRFSG 160 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717 R + +E + G A +S + ++ G G K++KA QLGV+++ EE+ L + Sbjct: 161 HSRDELKELIEAHGGKNLAGVSGNVEFLVAGKKIGPGKIQKATQLGVRLIPEEELLAM 218 >gi|291545736|emb|CBL18844.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Ruminococcus sp. SR1/5] Length = 225 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 60/240 (25%), Positives = 116/240 (48%), Gaps = 22/240 (9%) Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 NI+GL + L+ F I DIF + R + +I + GFG S NL + Sbjct: 1 MNIDGLSEATLEKFIAR----GFIHDFGDIFEISRYKD----EIVEMEGFGQKSYDNLME 52 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 S+ + + +L R I+SLGI ++G A+ + +++ + ++ + + Sbjct: 53 SLERAKETTLPRVIYSLGIANIGLANAKVICRHFDN---------DLDRIRHASLEEVSD 103 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 + +G +IA +V ++++ N ++ L+ + ++ E V TG+L Sbjct: 104 IDTIGPVIAGNLVAYFRDEDNDRRLDHLMSFLHIQEDSPKQ--EQIFEGMNFVITGSLVH 161 Query: 661 I-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFL 717 R +A+E + LG V+ +++KT+ +I D + SK +KA++LG+ I++EE F L Sbjct: 162 FGNRSEAKELIESLGGKVTGSVTKKTNYLINNDIQSNSSKNKKARELGIPILSEEDFRKL 221 >gi|153834101|ref|ZP_01986768.1| DNA ligase [Vibrio harveyi HY01] gi|148869566|gb|EDL68561.1| DNA ligase [Vibrio harveyi HY01] Length = 124 Score = 185 bits (469), Expect = 3e-44, Method: Composition-based stats. Identities = 48/124 (38%), Positives = 76/124 (61%), Gaps = 2/124 (1%) Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFT 655 +I V +G I+A+ I F+ +N V+ LL + P I ++ V +E K +V T Sbjct: 1 MIEVQDIGVIVAKHITTFFGEEKNQAVVQDLLAQGINWPEIAAPQEGVELPLEGKTVVLT 60 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL ++ R +A+E + LGA V+ +S+KTDI+ G+N GSKL KAQ+LG++I E+ L Sbjct: 61 GTLSQLGRSEAKEALQNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIQTEQDLL 120 Query: 716 FLLQ 719 L++ Sbjct: 121 NLMK 124 >gi|149912310|ref|ZP_01900877.1| NAD-dependent DNA ligase [Moritella sp. PE36] gi|149804613|gb|EDM64677.1| NAD-dependent DNA ligase [Moritella sp. PE36] Length = 171 Score = 185 bits (469), Expect = 3e-44, Method: Composition-based stats. Identities = 56/177 (31%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 ++ +L +F++SLGIR VG A +LA L+ + LI + Sbjct: 1 KAAKHTTLAKFLYSLGIREVGEATAANLANDLLTLDAIKKA----------SVERLILIS 50 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 VGDI+A+ I F++ N+ + LL+ S ++ + V TGTL I Sbjct: 51 DVGDIVAKHIYYFFREAHNLEVIVQLLEAGMSWDDVAVKEASQQPLLGAIYVITGTLVNI 110 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+ + LGA V+ +S+KT ++ G GSKL KAQ+LG+ I+ E+ L LL Sbjct: 111 SRADAKTRLQDLGAKVAGSVSKKTTALVAGPAAGSKLTKAQELGIDILTEDDLLALL 167 >gi|238794537|ref|ZP_04638145.1| DNA ligase B [Yersinia intermedia ATCC 29909] gi|238726117|gb|EEQ17663.1| DNA ligase B [Yersinia intermedia ATCC 29909] Length = 567 Score = 184 bits (466), Expect = 6e-44, Method: Composition-based stats. Identities = 112/625 (17%), Positives = 203/625 (32%), Gaps = 106/625 (16%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P E +S E+++L+Q++ Y+Q +I D YD L+ + Sbjct: 33 PPERMS-----AEINTLKQQLDKWSVAYHQQGISLIADDVYDQLQEKLALWQSCH----- 82 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ G + H + L+K+ N L ++ W Sbjct: 83 -RLPDN----HGNTLIPGNGTFRHPVAHTGLKKLKNEAALANWMVGRKSLW--------- 128 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 ++PK+DG +T+ Y+ GK + RG+G G++ + I IP+ P + + Sbjct: 129 --VQPKVDGVAVTLVYQDGKLIQLLSRGNGLKGQNWTDKAPFITAIPQY-IATAPPWLTL 185 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247 +GE+++ D L + N R A +G L R +P + L F+ Sbjct: 186 QGELFLQMGDHLQASS--------GGVNARAAVAGALMRKSPAALLPQLGIFIWAWPDGP 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + + ++ +GFP+ + + + LP+ DG+V + Sbjct: 238 SSMVEKG----ELLQAMGFPLTAKYSK-PIASSRDVAHFRHHWFHTALPFVTDGVVIRQA 292 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + W ++ K+ +Q T + DI IGRTG +T V + PV I Sbjct: 293 AEPAGRNWQAVPGY--WAVAWKYPAQQQITEIKDIHFTIGRTGRVTVVLLVSPVKIDDKW 350 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 I + DI GD++++ AG IP++ ++ Sbjct: 351 IRRVNV-----------GSVSRWRQWDITSGDQIIIALAGHGIPRLESVVWRVSQ----- 394 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSA--QQLERLKHFVSRDAFNIEG 485 ++ P G C ++ Q L RL +I+ Sbjct: 395 --------------RQEFTPPAGDQFHQLSCFRLISPECEPQLLSRLIWLSGPKGLDIQS 440 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 + I +L R Q + G G N+Y Sbjct: 441 ISSGYWRDLIHH----GLINDLVGWLSLTRDQIAG------VPGIGTARAENIYQQFQST 490 Query: 546 RNISLERFIFSLGIRH--VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 R +++ +LG V R L + +P Sbjct: 491 RQKPFSQWLQALGFAQGIVVNSPWRLLQQR--------------------SIAEWGLIPG 530 Query: 604 VGDIIAQAIVEFYQNPRNICAVEAL 628 +G + A+ I F +P + L Sbjct: 531 IGPVRAKQITRFLHHPEVQAMADFL 555 >gi|126174866|ref|YP_001051015.1| DNA ligase (NAD(+)) [Shewanella baltica OS155] gi|125998071|gb|ABN62146.1| DNA ligase (NAD(+)) [Shewanella baltica OS155] Length = 145 Score = 183 bits (464), Expect = 1e-43, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 8/138 (5%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E ++ E A + + +L Q ++ H+ YY P I DSEYD L +R + +P L + Sbjct: 12 EDVTPENASQVMQALSQPLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVA- 70 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 + P ++GG ++TH P LSL+ ++ D F R+ + F Sbjct: 71 --DSPTQRVGGLALAKFDQITHLKPMLSLDNAFDEADFSAFHKRVTDKVG-----EVSFC 123 Query: 130 LEPKIDGTMITIRYEKGK 147 EPK+DG ++I Y G Sbjct: 124 CEPKLDGLAVSILYRNGV 141 >gi|188532209|ref|YP_001906006.1| NAD-dependent DNA ligase LigB [Erwinia tasmaniensis Et1/99] gi|188027251|emb|CAO95090.1| Putative NAD-dependent DNA ligase [Erwinia tasmaniensis Et1/99] Length = 561 Score = 183 bits (463), Expect = 1e-43, Method: Composition-based stats. Identities = 126/617 (20%), Positives = 227/617 (36%), Gaps = 91/617 (14%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S +A E+S+L+ ++ DD YY+ + I D +YD L + F P Sbjct: 23 SASRADAEISALQAQLEKWDDAYYRRGESPIPDEQYDTLHGKLRQWQRCF-------SPA 75 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 L K + + KV H + + ++K+ + L +++ R W ++P Sbjct: 76 SDLRK---PLLKTDGKVLHPVSHMRVKKLPDKTALTRWMARRSGLW-----------VQP 121 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG +++ Y G+ RGDG GED + R IP IP+ + ++ + +GE+Y Sbjct: 122 KIDGVAVSLLYRDGQLEQMISRGDGVRGEDWTEKARLIPDIPKFIPHSMR-VQVFQGELY 180 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + D N R+A +G L P + + + FFV A Sbjct: 181 LKMTDHRQAI--------NGGKNARSAVAGALMAKAPAPLLQQIGFFVWEWPDGPTSLA- 231 Query: 253 GQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + L + R LGFP + + + + S+ LP+ DG+V Sbjct: 232 ---QRLTETRSLGFPDISAWTHRVDNVDEVESWRERW--FHQPLPFVTDGIVVHS--IPT 284 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 ++ W+I+ K+A +A+ + ++ IGRTG + V L PV +G I+ Sbjct: 285 RRGSDWLPEFGEWVIAWKYAPPEATAEVRSVEFAIGRTGRVNVVLNLLPVQLGDKRISRV 344 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 ++ D+ GD+V + AG P++ ++ Sbjct: 345 SV-----------GSIENWKQTDVIAGDQVSISLAGLGAPRLDKVLWRV----------- 382 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + P + + C Q L RL+ + N+ G G+Q Sbjct: 383 -------AERAYPPQPDAAQFNSVSCFHLTPQCRQQFLARLEWLGGKSVLNLVGTGRQTW 435 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 +S S+ L + Q +E + G G+ + R + + Sbjct: 436 QQLIQS----GSMVHIFSWLALTKEQ------LEAVPGIGEQRAQLFWQQFKLSRQLPFK 485 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R++ +LG+ + + +L +N + ++P VG +A Sbjct: 486 RWVKALGV-PIPEKALNTLTD------------DNWQPLVSRRLQEWQQLPGVGRKLAGK 532 Query: 612 IVEFYQNPRNICAVEAL 628 IV F Q +E L Sbjct: 533 IVSFLQQREVRQLIEGL 549 >gi|92113642|ref|YP_573570.1| NAD-dependent DNA ligase LigB [Chromohalobacter salexigens DSM 3043] gi|123387489|sp|Q1QXD7|LIGB_CHRSD RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|91796732|gb|ABE58871.1| DNA ligase (NAD+) [Chromohalobacter salexigens DSM 3043] Length = 629 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 121/624 (19%), Positives = 219/624 (35%), Gaps = 87/624 (13%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 P ++ E + + +L+ I+ D YY+ + ++ D YD+ KRR A FP LA Sbjct: 44 PPCPQMTPEAMQNDYQALDARIARWDRAYYRQGQRLVDDGTYDSAKRRLAHWAECFPLLA 103 Query: 67 RSE-DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 + + + P G + H + + K+ + + + ++ R Sbjct: 104 KPSVNTHEPT---GAK--------HHPVAQTGIAKLPDRDAVAGWVAR---------QGD 143 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 ++PK+DG +T+ Y G+ A RGDG SG+D I IP L + P ++ Sbjct: 144 HPLWVQPKVDGVAVTLVYRHGRLAAAISRGDGVSGQDWYTKALHIAAIPSHLPADAPPLV 203 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245 ++GE+Y + + A R A L + + Sbjct: 204 ILQGELYARRTA------HRQSRDGTDGARARIAG---LMARDTLTDREGSTIGLFVWAW 254 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + + G V T I ++ R LP+ DG+V K Sbjct: 255 PNGPDTMPERLETLAGWGFG-DVAEMTHGVATAEDIAAWRQRW--YRHALPFATDGVVVK 311 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 +A P W ++ K+ ++A R+ ++ +GRTG + VA LEPV +G Sbjct: 312 RG--DRPPGSDWQASPPDWAMAWKYPAREALARVDALEFSVGRTGRIAVVAELEPVLLGD 369 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +T +L D+R GD+V ++ AG IP++ +++V R Sbjct: 370 KRVTRVSL-----------GSLAHWRRTDVRPGDQVRLRLAGLTIPQLQEVVVRTRP--- 415 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL-ACSAQQLERLKHFVSRDAFNIE 484 ++ C AC Q L RL+ S + + Sbjct: 416 ----------------RPQVDAPEADQYDRLSCLRFTPACRDQFLARLEWLGSDEGLDFP 459 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+G + A ++ D TL T +E + G G + Sbjct: 460 GIGPATWNQLVD----AGLVKGLLDWRTL------DTAALEALPGVGKKTARAWQRHFAL 509 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 S R++ +LG+ V + + Y + + DW + Sbjct: 510 ADTRSAVRWLRALGVPAVPRQALTDALERYG--------MAGLGTLAPPDWRDYS---GI 558 Query: 605 GDIIAQAIVEFYQNPRNICAVEAL 628 G+ A + F+++ + +L Sbjct: 559 GETRAMQLTRFFRDTDIRHWLASL 582 >gi|313500944|gb|ADR62310.1| LigB [Pseudomonas putida BIRD-1] Length = 566 Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats. Identities = 113/634 (17%), Positives = 224/634 (35%), Gaps = 95/634 (14%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + +QA E++ L ++ D+ Y++ ++ D YD + R + + F Sbjct: 27 NPQQAEAEVAQLRATLARWDEHYHRQGIALVADELYDQSRERLNHLQQCF------AVGT 80 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P + + V H +P ++K+ + + + +++ ++P Sbjct: 81 SPS-----PLASARGPVPHPVPHTGVDKLADRQAVARWMA-----------GKTGVWVQP 124 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG +++ Y++G+ V RGDG G D S ++ + + R L + + ++GE+Y Sbjct: 125 KVDGVAVSLTYQQGRLVQLTSRGDGVHGHDWSRHVKQLGAVTRQLPEAV--DLHLQGELY 182 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + ND + AN R +G+L R T + Sbjct: 183 LRLND--------HVQAKAGSANARGTVAGLLARKQLTGEQGNAIGLF---VWGWPHGPE 231 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L ++ LGFP + A + + RS LP+ DG++ + Sbjct: 232 QQAERLAQLARLGFPDSQLYSIAIDTLE-DAAHWREHWYRSALPFATDGVILRQGSR--P 288 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +A++P W+ + K+ QA + D+ ++GRTG +TPV ++PV + IT + Sbjct: 289 PAERWQAKAPYWIAAWKYPYAQALAEVRDVRFRVGRTGRVTPVLHVQPVTLDDRRITQVS 348 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 L DIR GD+V + AG IP++ ++ Sbjct: 349 L-----------GSLARWQRLDIRPGDQVAISLAGLTIPRLEHVVHRAVE---------- 387 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + + AH C C Q + RL + + G Sbjct: 388 ---------RQPITAPAPDQHHAHSCWRASEGCDEQFIARLTWLGGKQGLALPRTGPGTW 438 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + A + D L + G ++ +L S ++ R+ ++ Sbjct: 439 RRLVE----AGLVTSMTDWLQLDAERLQ------QAPGISRLTAAHLMGSFDEARSRPVD 488 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 +++ +LG+ + K+ + A + + VP +G + Sbjct: 489 QWLRALGVP---------IGKHLP-------LTGDWQALASRNAEQWQTVPGIGAKRSHQ 532 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645 +VEF+ L + + Sbjct: 533 LVEFFAASEVQAIAAQLADAGIEGFRTPPQRIEQ 566 >gi|330989493|gb|EGH87596.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. lachrymans str. M301315] Length = 561 Score = 181 bits (460), Expect = 3e-43, Method: Composition-based stats. Identities = 112/625 (17%), Positives = 204/625 (32%), Gaps = 94/625 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 S +AR E+++L+Q+++ DD Y++ I D YD +++ F Sbjct: 25 CPDWSAAKARSEVTALQQQVAAWDDSYHRQGLSKIPDELYDQARQKLSVWRSCF--AISK 82 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + + +G H +P + K+ + + ++ ++ W Sbjct: 83 PESDPLTTAVGPLP--------HPVPHTGVNKLEDEDSVKAWLKGRKDLW---------- 124 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PKIDG +T+ YEKG+ V A RGDG G+D ++ R I IP+ L + + ++ Sbjct: 125 -IQPKIDGVAVTLVYEKGQLVQAISRGDGRKGQDWTSQARLIKAIPQNLF--HRDSLILQ 181 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+Y D + N R+ +G+L +G Sbjct: 182 GELYWRLTDHIQAIS--------GSVNARSKVAGMLA------RQTISPQQADAIGLFVW 227 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + G +M Q++ L G + P + + Sbjct: 228 DWPNGPTDMAQRLAGLQAMGFEGSEAYTLSLENHVQAARWREHWYRNPLPFATDGVIMRQ 287 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +A +P W+ + K QA + + +GR+G +TPV L PV + + Sbjct: 288 GQRPPAQRWQASAPYWIAAWKHPYAQALAEVRKVSFNVGRSGRITPVLELTPVRLDDRTV 347 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + + DIR GD+V V AG IP++ +I Sbjct: 348 SRIS-----------TGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVISRAAERVEMII 396 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLG 487 C C +Q RL + + G+G Sbjct: 397 -------------------PQADDFHELSCWQATPGCESQFRARLIWLSGKKGLALPGVG 437 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 D ++ I +L + ++ NI GF + S L S+ R Sbjct: 438 PGTWDKLIENG----------QIESLLDWMTLNHAELANIPGFAERSSAKLLASLQTARE 487 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 + ++ ++G+ G+ +N P +G Sbjct: 488 RPFQTWLKAIGLPPTGSAT----------------LPDNWQELAGRSVEQWQAEPGIGPG 531 Query: 608 IAQAIVEFYQNPRNICAVEALLKEV 632 A + F+Q P L + Sbjct: 532 RAAKLRSFFQAPEVQALSHQLQAQG 556 >gi|330967268|gb|EGH67528.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. actinidiae str. M302091] Length = 560 Score = 181 bits (459), Expect = 4e-43, Method: Composition-based stats. Identities = 115/616 (18%), Positives = 211/616 (34%), Gaps = 101/616 (16%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PD 64 S +A E+++L+Q+I+ DD Y++ I D YD +++ + F P Sbjct: 25 CPDWSHAKASSEITALQQQIAKWDDSYHRQGLSQIPDELYDQSRQKLNDWRSCFAVSTPQ 84 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 + GPL H +P + K+ + +D++ ++ Sbjct: 85 ANPLKTATGPL--------------AHPVPHTGVNKLADEKDVKAWLK-----------G 119 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 ++PK+DG +T+ Y++G+ V A RGDG G+D + + I IP L P Sbjct: 120 RTDLWIQPKVDGVAVTLVYDEGRLVQAISRGDGTKGQDWTPQAQLIKAIP--QQLPQPGS 177 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244 + ++GE+Y D + N R+ +G+L R + + +G Sbjct: 178 LILQGELYWRLTDHVQAAS--------GSVNARSKVAGMLARQSISPQQAD------AIG 223 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + G +M Q++ L N + + + P Sbjct: 224 LFVWDWPDGPADMAQRLAGLQALGFNDSVAYTHPLENQAQAADWREHWYRNPLPFATDGV 283 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 + + +A +P W+ + K QA + + IGR+G +TPV L PV + Sbjct: 284 IMRQGQRPPAQRWQASAPYWIAAWKHPYAQALAEVRKVHFNIGRSGKITPVLELTPVRLD 343 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 ++ + DIR GD + V AG IP++ ++ Sbjct: 344 DRTVSRISA-----------GSLPRWEKLDIRPGDHIAVSLAGLTIPRLDGVVSRATERA 392 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A + AA C +Q RL + + Sbjct: 393 AMSVP-----HSDYHDLSCW--------QAAPGC------ESQFRARLVWLSGKKGLALP 433 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+G D +S + + D TL + ++ NI G + S L DS+ Sbjct: 434 GVGPGTWDKLIESGHISGLL----DWMTL------NHAELANIPGLAERSSAKLLDSLQT 483 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 R + ++ ++G+ G A+ +N P + Sbjct: 484 ARERPFQTWLKAIGLPPAGN----------------AKLPDNWHDLAERSVAQWQAEPGI 527 Query: 605 GDIIAQAIVEFYQNPR 620 G A + F+ +P Sbjct: 528 GPGRAAKLRAFFHDPH 543 >gi|238784014|ref|ZP_04628030.1| DNA ligase B [Yersinia bercovieri ATCC 43970] gi|238715122|gb|EEQ07118.1| DNA ligase B [Yersinia bercovieri ATCC 43970] Length = 553 Score = 181 bits (458), Expect = 4e-43, Method: Composition-based stats. Identities = 116/625 (18%), Positives = 220/625 (35%), Gaps = 97/625 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 S E+ E++SL++++ D Y+Q ++ D YD L+ + Sbjct: 15 CPEWSAERVSLEVNSLKKQLDKWDAAYHQQGVSLLEDDIYDQLQIKLQGWQ------VCG 68 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ NK G K +H + L+K+ + ++ ++ R + W Sbjct: 69 GQPDSTENK--GVPGHG--KFSHPVAHTGLKKLKSETEVANWMLRREKLW---------- 114 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y+ GK + RGDG G++ S I IP ++ P ++ ++ Sbjct: 115 -VQPKVDGVAVTLVYQNGKLMQLLSRGDGWKGQNWSDKAPFIAAIPHYIAGAPP-LLTLQ 172 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + G N R++ +G L R + + + L F+ + Sbjct: 173 GELFL-----QMEGHKQAQFGG---VNARSSVAGALMRKSSSPLLAQLGIFIWAWPDGPK 224 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E +++ +GFP+ + + ++ LP+ DG+V + +E Sbjct: 225 SMV----EKNMRLQDMGFPLTAQYSK-PVTSAKDVARWRERWHQTPLPFVTDGVVIRQEE 279 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W ++ K+ +Q + DI IGRTG +T V ++ PV I I Sbjct: 280 EPAGRYWQAVPGP--WSVAWKYPPQQQMAEIKDIQFTIGRTGKITVVLQVSPVKIDDKWI 337 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD+V + AG+ IP++ +++ R F Sbjct: 338 RRVNI-----------GSIARWRQWDITTGDQVTITLAGQSIPRLNNVVW--RVNQRHKF 384 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRC--TGGLACSAQQLERLKHFVSRDAFNIEGL 486 + P G C C Q L RL N+ + Sbjct: 385 T-----------------PPDGDKFHQLSCFRNLPYECEPQFLSRLIWLSGPKGLNMHNI 427 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 ++ +L Q I +I G ++Y + Sbjct: 428 SGGLWRELIHH----GLVKDLVGWLSLTPDQ------IADIPGISRDRAESIYQQFQRTT 477 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +++ +LG V + S + L+ P VG Sbjct: 478 QKPFSQWLQALGFPLVTFSNGHWHSLQRKSIAEWR----------------LM--PGVGP 519 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE 631 + A+ I +F +P + L K+ Sbjct: 520 VRAKQINDFLHHPEVQTMADFLSKQ 544 >gi|166226374|sp|A4VRF3|LIGB_PSEU5 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B Length = 556 Score = 181 bits (458), Expect = 4e-43, Method: Composition-based stats. Identities = 130/624 (20%), Positives = 224/624 (35%), Gaps = 98/624 (15%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +AR+E+ L+ +++ DD Y++ + ++ D YD + + D F + P+ Sbjct: 27 DDARARQEIHQLQAQLAQWDDAYHRRGQSLVDDEIYDQSRAQLDGWRRCF--VGTGAAPD 84 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 PL GG + H + L K+ + + + +I R W ++P Sbjct: 85 -PLQDAGGPL-------RHPVRQTGLVKLADEQAVATWIARRRDLW-----------IQP 125 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG +T+ Y G A RGDG +G D +A R + IP L +P+ + ++GE+Y Sbjct: 126 KIDGVAVTLVYRHGALQQAISRGDGLTGHDWTANARRLAAIP--ARLAVPDEVILQGELY 183 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + + + A R A + L+ R F Sbjct: 184 WRLDRHVQASH------GSAGARGRVAGAMASNGLDRNTAARIGLF-----VWDWPNGPD 232 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 L ++ LGFP Q ++ E R LP+ DG+V + ++ Sbjct: 233 SMNARLGQLAALGFPDTQAFSQPVETLEHARHWREH-WYRQALPFATDGVVLRQEQRPPA 291 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++ P W + K+ ++A T + D++ +IGRTG +TP+ +L PV + Sbjct: 292 ERW---QAEPHWAAAWKYPLRKALTEVRDVEFRIGRTGRITPLLQLAPVQLDD------- 341 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE--RHPDAQPFSF 430 ++ L D+R GDRV V AG IP++ ++ R P A P Sbjct: 342 ----RRVRMLSLGSLDRWQALDVRPGDRVAVALAGHSIPQLDSVVWRHTERAPVAAPDPR 397 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 C C Q L RL R +EG+G Sbjct: 398 RYHPDSCWRPAP--------------------GCEQQFLARLVWLGGRQGLALEGVGAGS 437 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ L + +E + G G L S + R L Sbjct: 438 WQALLEAGLLP----------DLLAWLELDAAALEQVPGIGKARANKLAASFARARQRPL 487 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +++ +LG+ A+ L A + + + A + W + VG A+ Sbjct: 488 AQWLKALGLP------AKQL--------PPAADWDALAARDLAQWQAEA---GVGPARAK 530 Query: 611 AIVEFYQNPRNICAVEALLKEVSP 634 + F++ E L P Sbjct: 531 QLQAFFRAAELPALRERLRAVGVP 554 >gi|146284243|ref|YP_001174396.1| NAD-dependent DNA ligase LigB [Pseudomonas stutzeri A1501] gi|145572448|gb|ABP81554.1| DNA ligase, NAD-dependent, putative [Pseudomonas stutzeri A1501] Length = 597 Score = 181 bits (458), Expect = 4e-43, Method: Composition-based stats. Identities = 130/624 (20%), Positives = 224/624 (35%), Gaps = 98/624 (15%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +AR+E+ L+ +++ DD Y++ + ++ D YD + + D F + P+ Sbjct: 68 DDARARQEIHQLQAQLAQWDDAYHRRGQSLVDDEIYDQSRAQLDGWRRCF--VGTGAAPD 125 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 PL GG + H + L K+ + + + +I R W ++P Sbjct: 126 -PLQDAGGPL-------RHPVRQTGLVKLADEQAVATWIARRRDLW-----------IQP 166 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG +T+ Y G A RGDG +G D +A R + IP L +P+ + ++GE+Y Sbjct: 167 KIDGVAVTLVYRHGALQQAISRGDGLTGHDWTANARRLAAIP--ARLAVPDEVILQGELY 224 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + + + A R A + L+ R F Sbjct: 225 WRLDRHVQASH------GSAGARGRVAGAMASNGLDRNTAARIGLF-----VWDWPNGPD 273 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 L ++ LGFP Q ++ E R LP+ DG+V + ++ Sbjct: 274 SMNARLGQLAALGFPDTQAFSQPVETLEHARHWREH-WYRQALPFATDGVVLRQEQRPPA 332 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++ P W + K+ ++A T + D++ +IGRTG +TP+ +L PV + Sbjct: 333 ERW---QAEPHWAAAWKYPLRKALTEVRDVEFRIGRTGRITPLLQLAPVQLDD------- 382 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE--RHPDAQPFSF 430 ++ L D+R GDRV V AG IP++ ++ R P A P Sbjct: 383 ----RRVRMLSLGSLDRWQALDVRPGDRVAVALAGHSIPQLDSVVWRHTERAPVAAPDPR 438 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 C C Q L RL R +EG+G Sbjct: 439 RYHPDSCWRPAP--------------------GCEQQFLARLVWLGGRQGLALEGVGAGS 478 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ L + +E + G G L S + R L Sbjct: 479 WQALLEAGLLP----------DLLAWLELDAAALEQVPGIGKARANKLAASFARARQRPL 528 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +++ +LG+ A+ L A + + + A + W + VG A+ Sbjct: 529 AQWLKALGLP------AKQL--------PPAADWDALAARDLAQWQAEA---GVGPARAK 571 Query: 611 AIVEFYQNPRNICAVEALLKEVSP 634 + F++ E L P Sbjct: 572 QLQAFFRAAELPALRERLRAVGVP 595 >gi|330874636|gb|EGH08785.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 561 Score = 181 bits (458), Expect = 5e-43, Method: Composition-based stats. Identities = 115/616 (18%), Positives = 212/616 (34%), Gaps = 100/616 (16%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PD 64 S +A E+++L+Q+I+ DD Y+ I D YD +++ + F P Sbjct: 25 CPDWSHAKASSEITALQQQIAKWDDSYHLQGLSQIPDELYDQSRQKLNDWRSCFAVSTPQ 84 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 + GPL TH +P + K+ + +D++ ++ Sbjct: 85 ANPLKTATGPL--------------THPVPHTGVNKLADEKDVKAWLK-----------G 119 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 ++PK+DG +T+ Y++G+ V A RGDG G+D + + I IP L Sbjct: 120 RTDLWIQPKVDGVAVTLVYDEGRLVQAISRGDGTKGQDWTPQAQLIKAIP--QQLPQLGS 177 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244 + ++GE+Y +D + N R+ +G+L R + + +G Sbjct: 178 LILQGELYWRLSDHVQAAS--------GSVNARSKVAGMLARQSISPQQAD------AIG 223 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + G +M+Q++ L N + + + P Sbjct: 224 LFVWDWPDGPADMVQRLAGLQTLGFNDSVAYTHPLENHAQAADWREHWYRNPLPFATDGV 283 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 + + +A +P W+ + K QA + + IGR+G +TPV L PV + Sbjct: 284 IMRQGQRPPAQRWQASAPYWIAAWKHPYAQALAEVRKVHFNIGRSGKITPVLELTPVRLD 343 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 ++ + DIR GD + V AG IP++ ++ Sbjct: 344 DRTVSRISA-----------GSLPRWEKLDIRPGDHIAVSLAGLTIPRLDGVVSRATERA 392 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A + AA C +Q RL + + Sbjct: 393 AMSVPH----ASDYHDLSCW--------QAAPGC------ESQFRARLVWLSGKKGLALP 434 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+G D +S + + D TL + ++ NI G + S L DS+ Sbjct: 435 GVGPGTWDKLIESGHISGLL----DWMTL------NHAELANIPGLAERSSAKLLDSLQT 484 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 R + ++ ++G+ G A+ +N P + Sbjct: 485 ARERPFQTWLKAIGLPPAGN----------------AKLPDNWHDLAERSVAQWQAEPGI 528 Query: 605 GDIIAQAIVEFYQNPR 620 G A + F+ +P Sbjct: 529 GPGRAAKLRAFFHDPH 544 >gi|26991646|ref|NP_747071.1| NAD-dependent DNA ligase LigB [Pseudomonas putida KT2440] gi|81439525|sp|Q88D59|LIGB_PSEPK RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|24986741|gb|AAN70535.1|AE016695_9 DNA ligase, NAD-dependent, putative [Pseudomonas putida KT2440] Length = 566 Score = 181 bits (458), Expect = 5e-43, Method: Composition-based stats. Identities = 114/634 (17%), Positives = 224/634 (35%), Gaps = 95/634 (14%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + +QA+ E++ L ++ D+ Y++ ++ D YD R + + F Sbjct: 27 NPQQAKAEVAQLRATLARWDEHYHRQGIALVADELYDQSHERLNHLQQCF------AVGT 80 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P + + V H +P ++K+ + + + +++T ++P Sbjct: 81 SPS-----PLASARGPVPHPVPHTGVDKLADRQAVARWMT-----------GKTGVWVQP 124 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG +++ Y++G+ V RGDG G D S I + + R L + + ++GE+Y Sbjct: 125 KVDGVAVSLTYQQGRLVQLTSRGDGVHGHDWSRHIPQLGAVTRQLPEAV--DLHLQGELY 182 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + ++ + AN R +G+L R T + Sbjct: 183 LRLDE--------HVQAKAGSANARGTVAGLLARKQLTGAQGNAIGLF---VWGWPHGPE 231 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L ++ LGFP + A + + RS LP+ DG++ + Sbjct: 232 QQAERLAQLARLGFPDSQLYSIAIDTLE-DAAHWREHWYRSALPFATDGVILRQGSR--P 288 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +A++P W+ + K+ QA + D+ ++GRTG +TPV ++PV + IT + Sbjct: 289 PAERWQAKAPYWIAAWKYPYAQALAEVRDVRFRVGRTGRVTPVLHVQPVTLDDRRITQVS 348 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 L DIR GD+V + AG IP++ ++ Sbjct: 349 L-----------GSLARWQRLDIRPGDQVAISLAGLTIPRLEHVVHRAVE---------- 387 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + + AH C C Q + RL + + G Sbjct: 388 ---------RQPITAPAPDQHHAHSCWQASEGCDEQFIARLTWLGGKQGLALPRTGPGTW 438 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + A + D L + G ++ T + S ++ R+ + Sbjct: 439 RRLVE----AGLVTSMTDWLQLDAERLQ------QAPGISRLTATQMLGSFDQARSRPFD 488 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 +++ +LG+ + K+ N A + VP +G ++ Sbjct: 489 QWLRALGVP---------IGKHLP-------LTGNWQALASRSAGQWQTVPGIGAKRSRQ 532 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645 +VEF+ L + + + Sbjct: 533 LVEFFAASEVQAIAAQLAEAGIEGFRTPPQRIEQ 566 >gi|28867612|ref|NP_790231.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. tomato str. DC3000] gi|81840358|sp|Q88AK8|LIGB_PSESM RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|28850847|gb|AAO53926.1| DNA ligase, NAD-dependent, putative [Pseudomonas syringae pv. tomato str. DC3000] Length = 561 Score = 180 bits (457), Expect = 7e-43, Method: Composition-based stats. Identities = 116/616 (18%), Positives = 208/616 (33%), Gaps = 100/616 (16%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PD 64 S +A E+++L+Q+I+ DD Y++ I D YD +++ + F P Sbjct: 25 CPDWSHARASSEITALQQQIASWDDSYHRQGLSQIPDELYDQSRQKLNDWRSCFAVSTPQ 84 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 + GPL H +P + K+ + +D++ ++ Sbjct: 85 ANPLKTATGPL--------------AHPVPHTGVNKLADEKDVKAWLK-----------G 119 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 ++PK+DG +T+ Y++G+ V A RGDG G+D + R I IP L P+ Sbjct: 120 RTDLWIQPKVDGVAVTLVYDEGRLVQAISRGDGTQGQDWTPQARLIKAIP--QQLPQPDS 177 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244 + ++GE+Y D + N R+ +G+L +G Sbjct: 178 LILQGELYWRLTDHVQAAS--------GSVNARSKVAGMLA------RQTISPQQADAIG 223 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + G +M Q++ L N + + + P Sbjct: 224 LFVWDWPDGPADMAQRLAGLQAMGFNHSVAYTHPLENHAQAADWREHWYRNPLPFATDGV 283 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 + + +A +P W+ + K QA + + IGRTG + PV L PV + Sbjct: 284 IMRQGQRPPAQRWQASAPYWIAAWKHPYAQALAEVRKVHFNIGRTGKIAPVLELTPVRLD 343 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 ++ + DIR GD + V AG IP++ ++ Sbjct: 344 DRTVSRISA-----------GSLSRWEKLDIRPGDHIAVSLAGLTIPRLDGVVSRAAERA 392 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 S AA C +Q RL + + Sbjct: 393 EMSVPHASDYHESSC------------WQAAPGC------ESQFRARLVWLSGKKGLALP 434 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+G D +S + + D TL + ++ NI G + S L DS+ Sbjct: 435 GVGPGTWDKLIESGHISGLL----DWMTL------NHAELANIPGLAERSSDKLLDSLQT 484 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 R + ++ ++G+ G A+ +N P + Sbjct: 485 ARERPFQTWLKAIGLPPAGN----------------AKLPDNWHDLAERSVEQWQAEPGI 528 Query: 605 GDIIAQAIVEFYQNPR 620 G A + F+Q+P Sbjct: 529 GPGRAAKLRAFFQDPH 544 >gi|312963566|ref|ZP_07778047.1| DNA ligase B [Pseudomonas fluorescens WH6] gi|311282075|gb|EFQ60675.1| DNA ligase B [Pseudomonas fluorescens WH6] Length = 553 Score = 180 bits (457), Expect = 7e-43, Method: Composition-based stats. Identities = 116/620 (18%), Positives = 224/620 (36%), Gaps = 93/620 (15%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 E AR ++ L +++ DD Y++ + + D YD ++R ++ Sbjct: 22 PEDARTQIHELAEQVRLWDDSYHRLGQSPVSDELYDQARQRLADWRPC-----AAQPATV 76 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P G + S + H + LEK+ + + + ++ W ++PK Sbjct: 77 P----GNPLTTSRGTLPHPVAHTGLEKLRDEQAVGTWLDTHKEVW-----------IQPK 121 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y +G+ RGDG G+D SA R IP I + L + + ++GE+Y Sbjct: 122 VDGVAVTLMYRQGRLSRVISRGDGTLGQDWSASARKIPGIVQQLPEPL--DLVLQGELYW 179 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + N R+ +G++ R +D G+G + +G Sbjct: 180 RLHA--------HVQSASGGLNARSKVAGLMNRRQLSDTDAA------GIGLFVWAWPEG 225 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +++ L ++ + ++ ++ P + + Sbjct: 226 PTGFTERLATLARLGFVDSQRYSQPVQDLTDAMHWRAYWYNHPLPFASDGVVLHQAQHAP 285 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +A +P W ++ K+ +A + + ++GRTG +TP+ L+PV++ I+ + Sbjct: 286 AQRWQANAPYWAVAWKYPATKALALVRKVHFKVGRTGRITPILELQPVHLDDRQISRVSA 345 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DIR GD+V + AG+VIP++ ++I+ Sbjct: 346 -----------GSLKRWQALDIRPGDQVSISLAGQVIPRLDEVILRN------------- 381 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 DL + A C C Q L RL + +G++ + Sbjct: 382 ------ATRVDLPVPDPRNFHALSCWQLDPGCEEQLLARLSWLSGNQGLALPHMGRETWN 435 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + A I D TL ++ NI G GD+S + DSI R + Sbjct: 436 VLIQ----AGLIAGFLDWLTLDA------AELANIDGLGDLSRARVLDSIRSARQRPFAQ 485 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 ++ +LG+ N + +IA + W + +G A + Sbjct: 486 WLKALGVPPAARN-------------NLEGDWQTLIARDTQAWQ---AIDGIGPGRAAQL 529 Query: 613 VEFYQNPRNICAVEALLKEV 632 F+++P+ E L Sbjct: 530 SAFFRDPQIQALAETLRMAG 549 >gi|330891383|gb|EGH24044.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. mori str. 301020] Length = 561 Score = 179 bits (455), Expect = 1e-42, Method: Composition-based stats. Identities = 108/619 (17%), Positives = 198/619 (31%), Gaps = 94/619 (15%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +AR E+++L+Q+++ DD Y++ I D YD +++ F + + Sbjct: 31 AKARSEVTALQQQVATWDDSYHRQGLSKIPDELYDQARQKLSVWRSCF--AISKPESDPL 88 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +G H +P + K+ + + ++ ++ W ++PKI Sbjct: 89 TTAVGPLP--------HPVPHTGVNKLEDEDSVKAWLKGRKDLW-----------IQPKI 129 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +T+ YEKG+ V A RGDG G+D ++ R I IP L + + ++GE+Y Sbjct: 130 DGVAVTLVYEKGQLVQAISRGDGRKGQDWTSQARLIKAIP--QRLPQHDSLILQGELYWR 187 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 D + + + + +G + G Sbjct: 188 LTDHIQAIS--------------GSVNARSKVAGMPARQTISPQQADAIGLFVWDWPNGP 233 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +M Q++ L G + P + + Sbjct: 234 GDMAQRLAGLQAMGFEGSEAYTHSLENHVQAARWREHWYRNPLPFATDGVIMRQGQRPPM 293 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 +A +P W+ + K QA + + IGR+G +TPV L PV + ++ + Sbjct: 294 QRWQASAPYWIAAWKHPYAQALAEVRKVSFNIGRSGRITPVLELTPVRLDDRTVSRIS-- 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 DIR GD+V V AG IP++ +I Sbjct: 352 ---------TGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVISRAAERVEMII------ 396 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 C C +Q RL + + G+G D Sbjct: 397 -------------PQADDFHELSCWQATPGCESQFRARLIWLSGKKGLALPGVGPGTWDK 443 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ I +L + ++ NI GF + S L S+ R + + Sbjct: 444 LIENG----------QIESLLDWMTLNHAELANIPGFAERSSAKLLASLQTARERPFQTW 493 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + ++G+ G+ +N P +G A + Sbjct: 494 LKAIGLPPTGSAT----------------LPDNWQELAARSVEQWQAEPGIGPGRAAKLR 537 Query: 614 EFYQNPRNICAVEALLKEV 632 F+Q P L + Sbjct: 538 SFFQAPEVQALSHQLQAQG 556 >gi|213967844|ref|ZP_03395991.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1] gi|301382481|ref|ZP_07230899.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tomato Max13] gi|302062268|ref|ZP_07253809.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tomato K40] gi|302132915|ref|ZP_07258905.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927620|gb|EEB61168.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1] Length = 563 Score = 179 bits (454), Expect = 1e-42, Method: Composition-based stats. Identities = 115/616 (18%), Positives = 208/616 (33%), Gaps = 100/616 (16%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PD 64 S +A E+++L+Q+I+ DD Y++ I D YD +++ + F P Sbjct: 27 CPDWSHARASSEITALQQQIASWDDSYHRQGLSQIPDELYDQSRQKLNDWRSCFAVSTPQ 86 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 + GPL H +P + K+ + +D++ ++ Sbjct: 87 ANPLKTATGPL--------------AHPVPHTGVNKLADEKDVKAWLK-----------G 121 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 ++PK+DG +T+ Y++G+ V A RGDG G+D + R I IP L P+ Sbjct: 122 RTDLWIQPKVDGVAVTLVYDEGRLVQAISRGDGTQGQDWTPQARLIKAIP--QQLPQPDS 179 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244 + ++GE+Y D + N R+ +G+L +G Sbjct: 180 LILQGELYWRLTDHVQAAS--------GSVNARSKVAGMLA------RQTISPQQADAIG 225 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + G +M Q++ L N + + + P Sbjct: 226 LFVWDWPDGPADMAQRLAGLQALGFNHSVAYTHPLENHAQAADWREHWYRNPLPFATDGV 285 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 + + +A +P W+ + K QA + + IGRTG + PV L PV + Sbjct: 286 IMRQGQRPPAQRWQASAPYWIAAWKHPYAQALAEVRKVHFNIGRTGKIAPVLELTPVRLD 345 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 ++ + DIR GD + V AG IP++ ++ Sbjct: 346 DRTVSRISA-----------GSLSRWEKLDIRPGDHIAVSLAGLTIPRLDGVVSRAAERA 394 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + AA C +Q RL + + Sbjct: 395 EMSVPH----ASDYHELSCW--------QAAPGC------ESQFRARLVWLSGKKGLALP 436 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+G D +S + + D TL + ++ NI G + S L DS+ Sbjct: 437 GVGPGTWDKLIESGHISGLL----DWMTL------NHAELANIPGLAERSSDKLLDSLQT 486 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 R + ++ ++G+ G A+ +N P + Sbjct: 487 ARERPFQTWLKAIGLPPAGN----------------AKLPDNWHDLAERSAQQWQAEPGI 530 Query: 605 GDIIAQAIVEFYQNPR 620 G A + F+Q+P Sbjct: 531 GPGRAAKLRAFFQDPH 546 >gi|310765950|gb|ADP10900.1| NAD-dependent DNA ligase LigB [Erwinia sp. Ejp617] Length = 560 Score = 179 bits (453), Expect = 2e-42, Method: Composition-based stats. Identities = 118/623 (18%), Positives = 215/623 (34%), Gaps = 89/623 (14%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S +A E+S+LE ++ DD YY+ + I D YD L + F P Sbjct: 23 SASRADAEISALEAQLKKWDDAYYRRGESQIPDERYDTLHGKLQQWQRCF-------SPA 75 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 L + + + KV H + ++K+ + + +++ + W ++P Sbjct: 76 SDLRQ---PLLKTDGKVLHPVSHTGVKKLSDKAAVARWMEKRDGLW-----------IQP 121 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG +T+ Y G+ V RGDG GED +A R IP IP+ + P + +GE+Y Sbjct: 122 KVDGVAVTLLYRDGRLVQMISRGDGVKGEDWTAKARQIPAIPKSIP-RFPAVQVFQGELY 180 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + D D + R+ +G L P+ + + + FV A+ Sbjct: 181 LKMTDHQQATD--------GGKSARSIVAGALMAKAPSTMLQRVGIFVWAWPDGPNSIAQ 232 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 + + V + G + P+ DG+V Sbjct: 233 RLTGIRALGFPDISNWTHRVENVDEVEGWRERWFHQAL-----PFATDGIVVHSIPTRQG 287 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 W I+ K+ + ++ + ++ IGRTG + V L PV + ++ Sbjct: 288 TDWLPELGD--WAIAWKYPPPEVTSEVRSVEFAIGRTGRINAVLNLLPVQLDDKRVSRVN 345 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 + D+ GD V + AG +P++ D + Sbjct: 346 I-----------GSIEHWKQTDVIAGDLVSISLAGLGVPRM----------DKVIWRVKE 384 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 + +L A C Q L RL+ S+ N+ G G+Q Sbjct: 385 RVLPPLPDATHFNSLSCFRLTAQ--------CRQQFLARLEWLSSKPVLNLSGAGRQTWQ 436 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + A S+ L Q + + G G+ + R + +R Sbjct: 437 QLIQ----AGSMAHIFSWLALSEEQLKA------VPGIGEQRAHFFWQQFRLSRQLPFKR 486 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 ++ +LG+ + +L +++H+ DW L P VG +A+ I Sbjct: 487 WVKALGV-PIPERAMNTLTD---------DNWQQLLSHSLQDWQQL---PGVGQTLARKI 533 Query: 613 VEFYQNPRNICAVEALLKEVSPS 635 + + ++ L V S Sbjct: 534 FSYLRQQEVRQLIDVLEASVVLS 556 >gi|327482626|gb|AEA85936.1| NAD-dependent DNA ligase LigB [Pseudomonas stutzeri DSM 4166] Length = 553 Score = 179 bits (453), Expect = 2e-42, Method: Composition-based stats. Identities = 131/624 (20%), Positives = 224/624 (35%), Gaps = 98/624 (15%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +AR+E+ L+ +++ DD Y++ + ++ D YD + + D F + P+ Sbjct: 24 DDARARQEIHQLQAQLAQWDDAYHRRGQSLVDDEIYDQSRAQLDGWRRCF--VGTGAAPD 81 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 PL GG + H I L K+ + + + +I R W ++P Sbjct: 82 -PLQDAGGPL-------RHPIRQTGLVKLADEQAVATWIARRRDLW-----------IQP 122 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG +T+ Y G A RGDG +G+D +A R + IP L +P+ + ++GE+Y Sbjct: 123 KIDGVAVTLVYRHGALQQAISRGDGLTGQDWTANARRLAAIP--ARLAVPDEVILQGELY 180 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + + + A R A + L+ R F Sbjct: 181 WRLDRHVQASH------GSAGARGRVAGAMASNGLDRDTAARIGLF-----VWDWPNGPD 229 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 L ++ LGFP Q ++ E R LP+ DG+V + ++ Sbjct: 230 SMNARLGQLAALGFPDTQAFSQPVETLEHARHWREH-WYRQALPFATDGVVLRQEQRPPA 288 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++ P W + K+ ++A T + D++ +IGRTG +TP+ +L PV + Sbjct: 289 ERW---QAEPHWAAAWKYPLRKALTEVRDVEFRIGRTGRITPLLQLAPVQLDD------- 338 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE--RHPDAQPFSF 430 ++ L D+R GDRV V AG IP++ ++ R P A P Sbjct: 339 ----RRVRTLSLGSLDRWQALDVRPGDRVAVALAGHSIPQLDSVVWRHTERAPVAAPDPR 394 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 C C Q L RL R +EG+G Sbjct: 395 RYHPDSCWRPAP--------------------GCDQQFLARLVWLGGRQGLALEGVGAGS 434 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ L + +E + G G L S + R L Sbjct: 435 WQALLEAGLLP----------DLLAWLELDAAALEQVPGIGKARANKLAASFARARQRPL 484 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +++ +LG+ A+ L A + + + A + W + VG A+ Sbjct: 485 AQWLKALGLP------AKQL--------PPAADWDALAARDLAQWQAEA---GVGPARAK 527 Query: 611 AIVEFYQNPRNICAVEALLKEVSP 634 + F+ E L P Sbjct: 528 QLQAFFGAAELPALRERLRAVGVP 551 >gi|291619488|ref|YP_003522230.1| YicF [Pantoea ananatis LMG 20103] gi|291154518|gb|ADD79102.1| YicF [Pantoea ananatis LMG 20103] Length = 568 Score = 178 bits (452), Expect = 3e-42, Method: Composition-based stats. Identities = 128/627 (20%), Positives = 220/627 (35%), Gaps = 91/627 (14%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A + +A E++ L+Q++ D Y+Q + ++ D++YD+L++R + F A Sbjct: 2 CPAWTSARAVNEIAHLQQQLRQWDKAYFQQGRSLVSDADYDSLQQRLNHWQRCFTQAADE 61 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P P E V H+ ++K R R Sbjct: 62 YVPALP------EDGTQWHPVAHT-------------GVKK--VRDKRALGYWMQARNDL 100 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PKIDG +++ Y +GK V RGDG GE A R IP IP + + I ++ Sbjct: 101 WVQPKIDGVAVSLIYRQGKLVSLISRGDGLHGEQWLAKARHIPAIP-SVIDSQQGSIVLQ 159 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+ FL + AV A R A + + + +P + + G S Sbjct: 160 GEL------FLKMTGHQQAVDGGRNARARVAGAMMSQADSPLLAQLGIFIWSWPDGPASM 213 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E L ++ GF + + Q + + + LP+ DG+V Sbjct: 214 P------ERLARLSSWGFDLASHWTQ-PVQDEEDAASWRERWFHAPLPFVTDGIVVHQAA 266 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 K W I+ K+ + S+ + +D IGRTG + V ++PV + + Sbjct: 267 RPAGKYWQPGEGE--WAIAWKYQPPEVSSEVRSVDFSIGRTGKVAVVLNIQPVQLDDKTV 324 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + +D+ GD+V V AG+ IP++ +I D Sbjct: 325 RRVNI-----------GSLKRWREQDVIAGDQVTVSLAGQGIPRLERVIWRVAQRD---- 369 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P + C T C Q L RL + NI G+ Sbjct: 370 ---------------YPEPPGSEHFTHLSCYTLTPDCHRQLLARLSWLSQKFVLNIPGVQ 414 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + + I T+ Q + G ++ R Sbjct: 415 RSTWQRLLDT----GCITHLFSWLTITPEQIAAA------AGISSERAQQIWHRFELTRQ 464 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 L R++ +LGI + + R+LA +E ++A + W +L P VG Sbjct: 465 QPLRRWVNALGIA-LPQKALRALAD---------KEWEPLLARDVQTWQAL---PGVGAR 511 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP 634 A+ I +Q+ + L ++ P Sbjct: 512 RAERIAAQFQDAGLRKLITFLQQQGIP 538 >gi|257482942|ref|ZP_05636983.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011813|gb|EGH91869.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 561 Score = 178 bits (452), Expect = 3e-42, Method: Composition-based stats. Identities = 111/619 (17%), Positives = 202/619 (32%), Gaps = 94/619 (15%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +AR E+++L+Q+++ DD Y++ I D YD +++ F + + Sbjct: 31 AKARSEVTNLQQQMAAWDDSYHRQGLSKIPDELYDQARQKLSVWRSCF--AISKPESDPL 88 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +G H +P + K+ + + ++ ++ W ++PKI Sbjct: 89 TTAVGPLP--------HPVPHTGVNKLEDEDSVKAWLKGRNDLW-----------IQPKI 129 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +T+ YEKG+ V A RGDG G+D ++ R I IP L + + ++GE+Y Sbjct: 130 DGVAVTLVYEKGQLVQAISRGDGRKGQDWTSQARLIKAIP--QRLPHHDSLILQGELYWR 187 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 D + N R+ +G+L +G + G Sbjct: 188 LTDHIQATS--------GSVNARSKVAGMLA------RQTISPQQADAIGLFVWDWPNGP 233 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +M Q++ L G + P + + Sbjct: 234 TDMAQRLSGLQAMGFEGSEAYTLSLENHVQAARWREHWYRNPLPFATDGVIMRQGQRPPA 293 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 +A +P W+ + K QA + + +GR+G +TPV L PV + ++ + Sbjct: 294 QRWQASAPYWIAAWKHPYAQALAEVRKVSFNVGRSGRITPVLELTPVRLDDRTVSRIS-- 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 DIR GD+V V AG IP++ +I Sbjct: 352 ---------TGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVISRAAERVEMII------ 396 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 C C +Q RL + + G+G D Sbjct: 397 -------------PQADDFHELSCWQATPGCESQFRARLIWLSGKKGLALPGVGPGTWDK 443 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ I +L + ++ NI GF + S L S+ R + + Sbjct: 444 LIENG----------QIESLLDWMTLNHAELANIPGFAERSSAKLLASLQTARERPFQTW 493 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + ++G+ G+ +N P +G A + Sbjct: 494 LKAIGLPPTGSAT----------------LPDNWQELAGRSVEQWQAEPGIGPGRAAKLR 537 Query: 614 EFYQNPRNICAVEALLKEV 632 F+Q P L + Sbjct: 538 SFFQAPEVQALSHQLQAQG 556 >gi|77461491|ref|YP_350998.1| NAD-dependent DNA ligase LigB [Pseudomonas fluorescens Pf0-1] gi|123772014|sp|Q3K5E7|LIGB_PSEPF RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|77385494|gb|ABA77007.1| putative exported DNA-ligase protein [Pseudomonas fluorescens Pf0-1] Length = 558 Score = 178 bits (450), Expect = 4e-42, Method: Composition-based stats. Identities = 133/627 (21%), Positives = 222/627 (35%), Gaps = 95/627 (15%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 + +A E+ +L+Q+I DD Y++ + +I D YD + R + F Sbjct: 23 DCPDWAAARASSEVVALQQQIDRWDDAYHREGRSVIADELYDQSRLRLNQWRQCF----N 78 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P PL G V H + L+K+ + D+ ++ W Sbjct: 79 LPSPPEPLRTASGP-------VAHPVAHTGLDKLHDAADIATWLRDRQNVW--------- 122 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 ++PK+DG +T+ Y G+ A RGDG G+D +A + I IP+ L+ + V Sbjct: 123 --VQPKVDGVAVTLIYRDGRLHQAISRGDGVRGQDWTASAKKIGAIPQQLTQPQ--DLLV 178 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247 +GE+Y N R AN R +G+L R + Sbjct: 179 QGELYWRLNG--------HMQARAGSANARATVAGLLGRKDLGAEHAAGIGLF---VWDW 227 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + E + + GFP QA + + S LP+ DG+V + Sbjct: 228 PHGPRDLPERITALTQFGFPTTVPYTQAVASLN-DAQHWRDHWYHSPLPFATDGVVLRQS 286 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +AR P W ++ K+ QA + + +IGRTG +TPV L PV + Sbjct: 287 LR--PPAERWQARPPYWAVAWKYPFAQALADVRKVHFKIGRTGRITPVLELSPVMLDD-- 342 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 IK + S DIR GD+V + AG IP++ + Sbjct: 343 ---------RQIKRVSVSSLRRWQELDIRPGDQVAISLAGLTIPRLDSV----------- 382 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL-ACSAQQLERLKHFVSRDAFNIEGL 486 + +S DLN A C C +Q L RL + + + Sbjct: 383 --------VLRSTERADLNVPLASDFHALSCWQPTPGCESQFLARLTWLSGKQGLALPHV 434 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G+ + ++ + D TL ++ NI G G+ S L S + R Sbjct: 435 GRGTWEKLLETGRLNSLL----DWLTL------DGPELANIAGLGERSSARLLHSFHSAR 484 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +++ +LG+ G A + N + W + +G Sbjct: 485 QRPFAQWLKALGLPPTGQAT-------------LADSWQALAQRNTEQWQAEA---GIGP 528 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVS 633 A + F+++P+ + E L Sbjct: 529 GRAAQLSAFFRDPQVLTLSETLQAAGV 555 >gi|331014918|gb|EGH94974.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 561 Score = 178 bits (450), Expect = 4e-42, Method: Composition-based stats. Identities = 114/616 (18%), Positives = 206/616 (33%), Gaps = 100/616 (16%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PD 64 S +A E+++L+Q+I+ DD Y++ I D YD +++ + F P Sbjct: 25 CPDWSHARASSEITALQQQIASWDDSYHRQGLSQIPDELYDQSRQKLNDWRSCFAVSTPQ 84 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 + GPL H +P + K+ + +D++ ++ Sbjct: 85 ANPLKTATGPL--------------AHPVPHTGVNKLADEKDVKAWLK-----------G 119 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 ++PK+DG +T+ Y +G+ A RGDG G+D + R I IP L P+ Sbjct: 120 RTDLWIQPKVDGVAVTLVYHEGRLAQAISRGDGTQGQDWTPQARLIKAIP--QQLPQPDS 177 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244 + ++GE+Y D + N R+ +G+L +G Sbjct: 178 LILQGELYWRLTDHVQAAS--------GSVNARSKVAGMLA------RQTISPQQADAIG 223 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + G +M Q++ L N + + + P Sbjct: 224 LFVWDWPDGPADMAQRLAGLQALGFNHSVAYTHPLENHAQAADWREHWYRNPLPFATDGV 283 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 + + +A +P W+ + K QA + + IGRTG + PV L PV + Sbjct: 284 IMRQGQRPPAQRWQASAPYWIAAWKHPYAQALAEVRKVHFNIGRTGKIAPVLELTPVRLD 343 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 ++ + DIR GD + V AG IP++ ++ Sbjct: 344 DRTVSRISA-----------GSLSRWEKLDIRPGDHIAVSLAGLTIPRLDGVVSRAAERA 392 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + AA C +Q RL + + Sbjct: 393 EMSVPH----ASDYHELSCW--------QAAPGC------ESQFRARLVWLSGKKGLALP 434 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+G D +S + + D TL + ++ NI G + S L DS+ Sbjct: 435 GVGPGTWDKLIESGHISGLL----DWMTL------NHAELANIPGLAERSSDKLLDSLQT 484 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 R + ++ ++G+ G A+ +N P + Sbjct: 485 ARERPFQTWLKAIGLPPAGN----------------AKLPDNWHDLAERSAQQWQAEPGI 528 Query: 605 GDIIAQAIVEFYQNPR 620 G A + F+Q+P Sbjct: 529 GPGRAAKLRAFFQDPH 544 >gi|259906726|ref|YP_002647082.1| NAD-dependent DNA ligase LigB [Erwinia pyrifoliae Ep1/96] gi|224962348|emb|CAX53803.1| NAD-dependent DNA ligase [Erwinia pyrifoliae Ep1/96] gi|283476511|emb|CAY72326.1| putative NAD-dependent DNA ligase [Erwinia pyrifoliae DSM 12163] Length = 560 Score = 177 bits (449), Expect = 5e-42, Method: Composition-based stats. Identities = 117/620 (18%), Positives = 218/620 (35%), Gaps = 89/620 (14%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S +A E+S+LE ++ DD YY+ + I D YD L + F P Sbjct: 23 SASRADAEISALEAQLKKWDDAYYRRGESQIPDERYDTLHGKLQQWQRCF-------SPA 75 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 L + + + KV H + ++K+ + + +++ + W ++P Sbjct: 76 SDLRQ---PLLKTDGKVLHPVSHTGVKKLSDKAAVARWMEKRDGLW-----------IQP 121 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG +T+ Y G+ V RGDG GED +A R IP IP+ + P + +GE+Y Sbjct: 122 KVDGVAVTLLYRDGRLVQMISRGDGVKGEDWTAKARQIPAIPKSIP-RFPAVQVFQGELY 180 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + D D + R+ +G L P+ + + + FV A+ Sbjct: 181 LKMTDHQQATD--------GGKSARSIVAGALMAKAPSTMLQRVGIFVWAWPDGPNSIAQ 232 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 + + V + G + P+ DG+V Sbjct: 233 RLTGIRALGFPDISNWTHRVENVDEVEGWRERWFHQAL-----PFATDGIVVHSIPTRQG 287 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 W I+ K+ + ++ + ++ IGRTG + V L PV + ++ Sbjct: 288 TDWLPELGD--WAIAWKYPPPEVTSEVRSVEFAIGRTGRINAVLNLLPVQLDDKRVSRVN 345 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 + D+ GD V + AG +P++ +I Sbjct: 346 I-----------GSIEHWKQTDVIAGDLVSISLAGLGVPRMDKVIW-------------- 380 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 + + + + ++ R T C Q L RL+ S+ N+ G G+Q Sbjct: 381 --RVKERVLPPLPDATHFNSLSCFRLTPQ--CRQQFLARLEWLSSKPVLNLSGAGRQTWQ 436 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + A S+ L Q + + G G+ + R + +R Sbjct: 437 QLIQ----AGSMTHIFSWLALSEEQLKA------VPGIGEQRAHFFWQQFRLSRQLPFKR 486 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 ++ +LG+ + +L +++H+ DW L P VG +A+ I Sbjct: 487 WVKALGV-PIPERAMNTLTD---------DNWQQLLSHSLQDWQQL---PGVGQTLARKI 533 Query: 613 VEFYQNPRNICAVEALLKEV 632 + + ++ L V Sbjct: 534 FSYLRQQEVRQLIDVLEASV 553 >gi|148550043|ref|YP_001270145.1| NAD-dependent DNA ligase LigB [Pseudomonas putida F1] gi|257096559|sp|A5WA01|LIGB_PSEP1 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|148514101|gb|ABQ80961.1| DNA ligase (NAD(+)) [Pseudomonas putida F1] Length = 566 Score = 177 bits (449), Expect = 5e-42, Method: Composition-based stats. Identities = 116/638 (18%), Positives = 226/638 (35%), Gaps = 95/638 (14%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 S +QA+ E++ L ++ D+ Y++ ++ D YD + R + + F Sbjct: 23 CPQWSPQQAKAEVAQLRATLARWDEHYHRQGIALVADELYDQSRERLNHLQQCF------ 76 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P + + V H +P ++K+ + + + +++ Sbjct: 77 AVGTSPS-----PLASARGPVPHPVPHTGVDKLADRQAVARWMA-----------GKSGV 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +++ Y++G+ V RGDG +G D S I + + R L + + ++ Sbjct: 121 WVQPKVDGVAVSLTYQQGRLVQLTSRGDGVNGHDWSRHIPQLDAVTRQLPEAL--DLHLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+Y+ +D + AN R +G+L R T Sbjct: 179 GELYLRLSD--------HVQAKAGSANARGTVAGLLARKQLTGAQGNAIGLF---VWGWP 227 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + Q E L ++ LGFP + A + + RS LP+ DG++ + Sbjct: 228 HGPEQQAERLAQLARLGFPDSQLYSIAIDTLE-DAAHWREHWYRSALPFATDGVILRQSS 286 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +A++P W+ + K+ QA + D+ ++GRTG +TPV L PV + I Sbjct: 287 R--PPAERWQAKAPYWIAAWKYPYAQALAEVRDVRFRVGRTGRVTPVLHLLPVTLDDRRI 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 T +L DIR GD+V + AG IP++ ++ A Sbjct: 345 TQVSL-----------GSLARWHTLDIRPGDQVAISLAGLTIPRLEQVVHRTVERQAVA- 392 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLG 487 AH C C Q + RL + + G Sbjct: 393 ------------------APAPDRYHAHSCWQASEGCDEQFIARLTWLGGKQGLALPRTG 434 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + A + D L + G ++ +L S ++ R+ Sbjct: 435 PGTWRRLVE----AGLVTSMTDWLQLDAERLQ------QAPGISRLTAAHLLGSFDEARS 484 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 ++++ +LG+ + K+ + + + + W + VP +G Sbjct: 485 RPFDQWLRALGVP---------IGKHLP----LTGDWQALASRSAGHWQT---VPGIGAK 528 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645 ++ +VEF+ L + + + Sbjct: 529 RSRQLVEFFAASEVQAIAAQLAETGIEGFRPPPQRIEQ 566 >gi|213024616|ref|ZP_03339063.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 130 Score = 177 bits (449), Expect = 5e-42, Method: Composition-based stats. Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 13/140 (9%) Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 A LA Y+ + + L +VP VG ++A + F+ N + Sbjct: 1 TAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVATHVFNFFAEESNRDVI 50 Query: 626 EALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 LL E + + + + S K +V TG+L ++ R A+ + LGA V+ +S Sbjct: 51 GQLLAEGVHWPAPVVINAQEIDSPFAGKTVVLTGSLSQMSRDDAKARLVALGAKVAGSVS 110 Query: 683 RKTDIIIVGDNPGSKLEKAQ 702 +KTD++I G+ GSKL KAQ Sbjct: 111 KKTDLVIAGEAAGSKLAKAQ 130 >gi|312170612|emb|CBX78875.1| putative NAD-dependent DNA ligase [Erwinia amylovora ATCC BAA-2158] Length = 554 Score = 177 bits (448), Expect = 6e-42, Method: Composition-based stats. Identities = 119/621 (19%), Positives = 218/621 (35%), Gaps = 91/621 (14%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S +A E+++L+ ++ D+ YY+ + + D YD L + F P Sbjct: 23 SPSRADAEIAALKAQLEKWDEAYYRRGEAQVPDERYDTLHDKLQQWQRCF-------SPA 75 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 L + + + KV H + ++K + +++ + W ++P Sbjct: 76 SDLRQ---PLLKTDGKVLHPVSHTGVKKASGKAAVARWMEKRDGLW-----------IQP 121 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG +T+ Y G+ V RGDG GED +A R IP IP+ + P + +GE+Y Sbjct: 122 KVDGVAVTLLYRDGRLVQMISRGDGVKGEDWTAKARQIPDIPKSIP-RFPAMQVFQGELY 180 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + D ND + R+ +G L + + + + FV AK Sbjct: 181 LKMTDHQQAND--------GGKSARSLVAGALMAKAASTVLQRVGIFVWAWPDGPNSIAK 232 Query: 253 GQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +R LGFP + + + + LP+ DG+V Sbjct: 233 RLTG----IRALGFPDIKDWTHRVENVDEVEGWRERW--FHQRLPFATDGIVVHGMPTRQ 286 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 W I+ K+ + ++ + ++ IGRTG + V L PV + ++ Sbjct: 287 GTDWLPERGD--WAIAWKYPPPEVTSEVRSVEFAIGRTGRINAVLNLLPVQLDDKRVSRV 344 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 + D+ GD+V + AG +P++ +I + + Sbjct: 345 NI-----------GSIEHWKQTDVIAGDQVSISLAGMGVPRMDKVIWRVK---ERVLPPL 390 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 S L PK C Q L RL+ S+ N+ G G+Q Sbjct: 391 PDATHFNSLSCFHLTPK---------------CRQQFLARLEWLSSKPVLNLSGAGRQTW 435 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 +S A L + + + G G+ + R + + Sbjct: 436 QQLMQSGSMA----HIFSWLALSEEELKA------VPGIGEQRAHFFWHQFRLSRQLPFK 485 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R++ +LG+ + +L +++H+ DW L P VG +A+ Sbjct: 486 RWVKALGV-PIPERAMNTLTD---------DNWQQLLSHSLQDWQQL---PGVGQTLARK 532 Query: 612 IVEFYQNPRNICAVEALLKEV 632 I + Q ++ L Sbjct: 533 IFSYLQQQEVRQLIDVLEAPG 553 >gi|292486544|ref|YP_003529410.1| putative NAD-dependent DNA ligase [Erwinia amylovora CFBP1430] gi|292897779|ref|YP_003537148.1| DNA ligase [Erwinia amylovora ATCC 49946] gi|291197627|emb|CBJ44721.1| putative DNA ligase [Erwinia amylovora ATCC 49946] gi|291551957|emb|CBA18994.1| putative NAD-dependent DNA ligase [Erwinia amylovora CFBP1430] Length = 554 Score = 177 bits (448), Expect = 6e-42, Method: Composition-based stats. Identities = 119/621 (19%), Positives = 218/621 (35%), Gaps = 91/621 (14%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S +A E+++L+ ++ D+ YY+ + + D YD L + F P Sbjct: 23 SPSRADAEIAALKAQLEKWDEAYYRRGEAQVPDERYDTLHDKLQQWQRCF-------SPA 75 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 L + + + KV H + ++K + +++ + W ++P Sbjct: 76 SDLRQ---PLLKTDGKVLHPVSHTGVKKASGKAAVARWMEKRDGLW-----------IQP 121 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG +T+ Y G+ V RGDG GED +A R IP IP+ + P + +GE+Y Sbjct: 122 KVDGVAVTLLYRDGRLVQMISRGDGVKGEDWTAKARQIPDIPKSIP-RFPAMQVFQGELY 180 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + D ND + R+ +G L + + + + FV AK Sbjct: 181 LKMTDHQQAND--------GGKSARSLVAGALMAKAASTVLQRVGIFVWAWPDGPNSIAK 232 Query: 253 GQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +R LGFP + + + + LP+ DG+V Sbjct: 233 RLTG----IRALGFPDIKDWTHRVENVDEVEGWRERW--FHQRLPFATDGIVVHGMPTRQ 286 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 W I+ K+ + ++ + ++ IGRTG + V L PV + ++ Sbjct: 287 GTDWLPEQGD--WAIAWKYPPPEVTSEVRSVEFAIGRTGRINAVLNLLPVQLDDKRVSRV 344 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 + D+ GD+V + AG +P++ +I + + Sbjct: 345 NI-----------GSIEHWKQTDVIAGDQVSISLAGMGVPRMDKVIWRVK---ERVLPPL 390 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 S L PK C Q L RL+ S+ N+ G G+Q Sbjct: 391 PDATHFNSLSCFHLTPK---------------CRQQFLARLEWLSSKPVLNLSGAGRQTW 435 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 +S A L + + + G G+ + R + + Sbjct: 436 QQLMQSGSMA----HIFSWLALSEEELKA------VPGIGEQRAHFFWQQFRLSRQLPFK 485 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R++ +LG+ + +L +++H+ DW L P VG +A+ Sbjct: 486 RWVKALGV-PIPERAMNTLTD---------DNWQQLLSHSLQDWQQL---PGVGQTLARK 532 Query: 612 IVEFYQNPRNICAVEALLKEV 632 I + Q ++ L Sbjct: 533 IFSYLQQQEVRQLIDVLEAPG 553 >gi|295095236|emb|CBK84326.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 556 Score = 176 bits (447), Expect = 9e-42, Method: Composition-based stats. Identities = 119/621 (19%), Positives = 214/621 (34%), Gaps = 97/621 (15%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S +A +E+++L+ +++ +D Y++ + D YD L R F D +D Sbjct: 24 SPAKAGQEIAALKAQLTRWNDDYWKQGSSEVSDDVYDRLNARLKQWQRCFHDEPLHDDL- 82 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 V H + K+ + + L +++ W ++P Sbjct: 83 --------PAASG--TVKHPFAHTGVHKVESKQALSRWMATQQDLW-----------VQP 121 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG +T+ Y+ GK V A RGDG GE+ +A R IP IP+ L+ ++GE++ Sbjct: 122 KVDGVAVTLVYKNGKLVQAISRGDGLQGEEWTAQARMIPAIPQTLAGP-LANSVLQGELF 180 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + + +G N R +G + R + F+ + Sbjct: 181 LLREG-----HIQQRMGGM---NARAKVAGAMMRATDRAALKQTGIFIWAWPDGPKAMKA 232 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 + + L V+ A + + + P+ DG+V + + Sbjct: 233 RLSTLAEAGFTLTARYTVPVKNAADVEAQRTAWFKASL-----PFATDGIVVRAS--AEP 285 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 W+++ K+ T + I +GRTG +T +A+LEP+ + + + Sbjct: 286 PGERWLPGEGSWVVAWKYLPVAQVTEVKAIHFTVGRTGRITAIAQLEPLMLDDKRVQRVS 345 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 L DI GD+VLV AG+ IP++ Sbjct: 346 L-----------GSVNRWQRLDIAPGDQVLVSLAGQGIPRLD------------------ 376 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + V R C C Q RL SR A +IEG+G+ Sbjct: 377 --NVVWRNVDRRKPQPPSSRYNGLTCFYASPECMEQFFARLTWLSSRQALDIEGVGESGW 434 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 +++ L Q + ++ G L+ N R Sbjct: 435 RTLYQA----------HRFEHLFSWLQLTQAQLTATAGISASHGAALWHQFNLARERPFI 484 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R+I ++GI + + A ++Q Q +P VG A+ Sbjct: 485 RWITAMGIPLARSTLK---AAGDRTWQALIQRSEA----------EWRMLPGVGQEKARQ 531 Query: 612 IVEFYQNPRNICAVEALLKEV 632 IV + P+ ++AL K + Sbjct: 532 IVNWLHQPQ----IDALAKWL 548 >gi|237802303|ref|ZP_04590764.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025160|gb|EGI05216.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 560 Score = 176 bits (447), Expect = 9e-42, Method: Composition-based stats. Identities = 115/624 (18%), Positives = 211/624 (33%), Gaps = 92/624 (14%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 S +A E+++L+++I+ DD Y++ I D YD + + F S Sbjct: 25 CPDWSAARANNEITALQKQIAEWDDSYHRQGVSQIPDELYDQSRLKLKVWRSCF---RVS 81 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + PL G + H IP + K+ + + + ++ Sbjct: 82 TVADNPLKTATGPL-------AHPIPHTGVNKLADEKSVTAWLR-----------GRTDV 123 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ YE G+ V A RGDG G+D + R I IP L E + ++ Sbjct: 124 WIQPKVDGVAVTLVYEGGRLVQAISRGDGKKGKDWTPQARLIKAIP--QQLPHAEYLVLQ 181 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+Y +D + N R+ +G+L R + +G Sbjct: 182 GELYWRLDDHIQAIS--------GSINARSKVAGLLARRTISPQQAD------AIGLLVW 227 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + G +M Q++ L + ++ + P + + Sbjct: 228 DWPNGPADMPQRLAGLQAQGFEDSATYTHRLENHAQASQWREHWYRNPLPFATDGVIIRQ 287 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +A +P W+ + K QA + ++ IGR+G +TPV L+PV + + Sbjct: 288 GQRPPAQRWQASAPYWIAAWKHPYAQALAEVRKVNFNIGRSGRITPVLELKPVRLDDRTV 347 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + + DIR GD++ V AG IP++ ++ + Sbjct: 348 SRIS-----------TGSLQRWQTLDIRPGDQIAVSLAGLTIPRLDGVVARAAERVSMTI 396 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 + A C +Q RL + + G+G Sbjct: 397 PH----ASDFHELSCW--------QATPGC------ESQFRARLIWLSGKKGLALPGVGP 438 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 D +S + + D TL + ++ NI G + S L DS+ R Sbjct: 439 GTWDKLIESGQISGLL----DWMTL------NHAELANIPGLAERSSAKLLDSLQTARAK 488 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 ++ ++G+ G A+ +N P VG Sbjct: 489 PFLAWLKAIGMPPTGD----------------AKLPDNWHDLTTRSVEQWQAEPGVGASR 532 Query: 609 AQAIVEFYQNPRNICAVEALLKEV 632 + + F+Q+P + L Sbjct: 533 SAKLRAFFQDPHVKAMSQQLQAHG 556 >gi|330812312|ref|YP_004356774.1| DNA ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380420|gb|AEA71770.1| putative exported DNA-ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 557 Score = 176 bits (447), Expect = 1e-41, Method: Composition-based stats. Identities = 130/628 (20%), Positives = 230/628 (36%), Gaps = 97/628 (15%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P E+AR E+++L+Q+I DD Y++ + + D YD + + F +LA Sbjct: 22 PCPDWPTERARAEIAALQQQIDTWDDGYHRLGQSPVADELYDQSRAQLGQWRRCF-NLAA 80 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 +DP + KV H + LEK+ + + + ++ W Sbjct: 81 PDDP----------PRSTGGKVPHPVVHTGLEKLKDADAVGAWLRGREDVW--------- 121 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 +PK+DG +T+ Y KG+ A RGDG G D + R I IP+ L ++ + V Sbjct: 122 --AQPKVDGVAVTLVYRKGRLHQAISRGDGVQGHDWTTNARKIGAIPQRLHQSV--DLVV 177 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246 +GE+Y + + N R +G++ R N T Y++ FV + Sbjct: 178 QGELYWRLEAHVQASS--------GSVNARGTMAGLMARSNLTVHDGVYIDLFVWDWPEG 229 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + + + N VR ++ + LP+ DG+V Sbjct: 230 PDTLPERMAALNALGFADTLDYNQPVRTLADAEQWRDHWYR-----TPLPFASDGIVLHQ 284 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 +AR+P W ++ K+ QA + + ++GRTG +TPV LE + + Sbjct: 285 SRR--PPADRWQARAPFWSVAWKYPYAQALAEVRKVHFKVGRTGRITPVLELERIRLDDR 342 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 I ++ DIR GDRV + AG IP++ + Sbjct: 343 WIRRVSVS-----------SLKRWEEMDIRPGDRVAISLAGLTIPRLDSV---------- 381 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL-ACSAQQLERLKHFVSRDAFNIEG 485 + +S ++LN C C +Q L RL + + Sbjct: 382 ---------VLRSVERQNLNVPAETDHHFLSCWQPTPGCESQFLARLGWLSGKQGLALPH 432 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 +G + + + D TL ++ NI GFG+ S T L S++ Sbjct: 433 VGPGTWEKLLAAGRLDGLL----DWMTLDA------AELANIAGFGEHSSTRLLASLHSA 482 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R E+++ +LG+ G A+ +Q A+ +G Sbjct: 483 RQRPFEQWLKALGLPPAGE------ARLEGPWQALAERSTEQWQAEA----------GIG 526 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVS 633 A + F+++P+ + + L Sbjct: 527 PGRAAQLSAFFRDPQVLALSDVLRTAGV 554 >gi|325662259|ref|ZP_08150874.1| hypothetical protein HMPREF0490_01612 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471511|gb|EGC74732.1| hypothetical protein HMPREF0490_01612 [Lachnospiraceae bacterium 4_1_37FAA] Length = 260 Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats. Identities = 68/275 (24%), Positives = 111/275 (40%), Gaps = 21/275 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +EQ ++ + L Q ++ YYQ +K I+ + EYD L + N Sbjct: 1 MEQKKQRMQELVQLLNQAGKAYYQDAKEIMSNHEYDRLYDELLVLEQE----LGITMANS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +G E+ L K H P LSL+K + L++F+ + K Sbjct: 57 PTVNVGYEVLSELPKERHEKPMLSLDKTKETDRLKEFV------------GEKKAVISWK 104 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG I + YE G+ A RG+G GE ++ + +P L + + +RGE I Sbjct: 105 LDGLTIVLTYENGELKKAVTRGNGEVGEVITNNAKVFQNVP--LRIAYRGELILRGEAVI 162 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 DF +N+E+ V Y NPRN SG +R+LN R + F+ L K + + Sbjct: 163 GYRDFEKINEEIEDV-DAKYKNPRNLCSGSVRQLNNEITARRNVQFYAFSLVKAEGVDFQ 221 Query: 253 GQYEML-QKMRCLGFPVNNGVRQANTFHGIVSYYN 286 + + ++ GF V + Sbjct: 222 NSRNIQLEWLKEQGFDVVEHYEVTKDTLEERVRFF 256 >gi|307543787|ref|YP_003896266.1| NAD-dependent DNA ligase LigB [Halomonas elongata DSM 2581] gi|307215811|emb|CBV41081.1| NAD-dependent DNA ligase LigB [Halomonas elongata DSM 2581] Length = 561 Score = 176 bits (445), Expect = 2e-41, Method: Composition-based stats. Identities = 129/627 (20%), Positives = 217/627 (34%), Gaps = 97/627 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 S A +EL++L + + Y + + D YD + R +A FPD++ Sbjct: 21 CPDWSKGHAERELAALHDRLDAWERAYRRNGSSPVSDDIYDQAQARFEAWQDCFPDISVD 80 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P + L H +P L K+ ++ + ++ R W Sbjct: 81 PAPTL------DPPDGELS---HPVPQSGLAKLDDVVEAGAWLARRDDVW---------- 121 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 L+PK+DG +T+ YE+G+ A RGDG SG+D +A R IP +P L + + +R Sbjct: 122 -LQPKVDGVAVTLVYEQGELSQAISRGDGLSGQDWTAKARFIPDVPD--RLPTQQRLVLR 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL--NPTDITRYLNFFVHGLGKT 246 GE+Y+ + + A R+ +G L R + + F Sbjct: 179 GELYLKLDG--------HVQAERGAAGARSVVAGWLARDSLDGAKARQIGLF-----VWD 225 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 K E L ++ LGFP V R+ LP+ DG+V K Sbjct: 226 WPDGPKALPERLARLAELGFPDTTDWTLPAESLEAVLS-QRDDWYRTPLPFATDGVVLKQ 284 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + P W + K+ + R+ ++ ++GRTG +TP+ L P + G Sbjct: 285 GQR--PGGEARTEAPPDWAAAWKYPPRSVLARVRGVEFRVGRTGRITPLLHLVPETLAGR 342 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 I T+ DIR GD V + AG+ IP++ + Sbjct: 343 SIRRVTV-----------GSLGRWQTLDIRPGDVVTISLAGQTIPRLDSVAWRAAE---- 387 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEG 485 ++ P A C C Q LERL +A ++ G Sbjct: 388 ---------------RPEVEPPPASDYNALSCWHPSPGCKGQFLERLAWLGGPEALDLAG 432 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 +G + A ++ D +L + + I + G L + Sbjct: 433 VGAGTWRSLVE----AGLVKDLLDWMSLSAETLQAASGIGEVRG------RQLVEVFATA 482 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R + ++ +LG A E + D +P VG Sbjct: 483 RQRPFDAWLEALGAPS----------------GALADEATEWSTLASRDLEQWRALPEVG 526 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEV 632 + A+A+ +F+ N E L +E Sbjct: 527 ETRAEALHDFFANAEVRGLAERLGEEG 553 >gi|32396667|gb|AAP49291.1| NAD-dependent DNA ligase [Bacillus sp. IMG-2] Length = 107 Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 8/115 (6%) Query: 45 DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104 D+EYD R + +P+L P+ P ++GG + + KV H +P LSL +N Sbjct: 1 DAEYDRFMRELIELEEKYPELK---TPDSPSQRVGGAVLDAFRKVAHRVPMLSLANAFNE 57 Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHS 159 +DLR F R+ + + + +E KIDG +++RYE G FV + RGDG + Sbjct: 58 QDLRDFDRRVRQAVG-----DVEYVVELKIDGLAVSLRYENGLFVQGSTRGDGTT 107 >gi|330961969|gb|EGH62229.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 523 Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats. Identities = 113/615 (18%), Positives = 213/615 (34%), Gaps = 102/615 (16%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PDLARSEDPNGPLNKI 78 +L+Q+I+ DD Y++ +I D YD +++ A F P+ GPL Sbjct: 2 ALQQQIASWDDSYHRQGISLIPDELYDQARQKLSAWRTCFAVSTPEANPLATATGPL--- 58 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 H IP + K+ + +D++ ++ ++PK+DG Sbjct: 59 -----------AHPIPHTGVNKLADEKDVKAWLK-----------GRTDLWIQPKVDGVA 96 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 +T+ Y++G+ V A RGDG G+D + R I IP L E + ++GE+Y ++ Sbjct: 97 VTLIYDEGRLVQAISRGDGVQGQDWTPQARLIKAIP--RQLPRTESVILQGELYWRLDEH 154 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 + N R+ +G+L R +G + G +M Sbjct: 155 IQATS--------GSVNARSKVAGLLARQTIKPQQAN------AIGLFVWDWPNGPTDMA 200 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 Q++ L + + + P + + + Sbjct: 201 QRLAGLQAMGFGDSVGYTHLLENHAQAAKWREHWYRNPLPFATDGVIMRQGQRPPAQRWQ 260 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 A +P W+ + K QA + +++ +GR+G +TPV L PV + ++T + Sbjct: 261 ATAPYWIAAWKHPYAQALAEVRNVNFTVGRSGRITPVLELTPVRLDDRIVTRISA----- 315 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 DIR GD+V V AG IP++ ++ Sbjct: 316 ------GSLQRWQALDIRPGDQVAVSLAGLTIPRLDSVVSRATE---------------- 353 Query: 439 SRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +++ + C C +Q RL + + G+G D ++ Sbjct: 354 ---RAEMSTPDARDFHELSCWQATPGCESQFRARLVWLSGKKGLALPGVGPGTWDRLIEN 410 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + D TL + ++ NI GF + S L S+ R + ++ ++ Sbjct: 411 GRIAGLL----DWMTL------NHAELANIPGFAERSSAKLLASLQTARERPFQVWLKAI 460 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 G+ G A+ +N P +G A + F+ Sbjct: 461 GLPPTGT----------------AKLPDNWHDLAARSVEQWQAEPGIGPGRAAKLRAFFH 504 Query: 618 NPRNICAVEALLKEV 632 +P+ + L + Sbjct: 505 DPQVQAISQQLQAQG 519 >gi|327395796|dbj|BAK13218.1| DNA ligase YicF [Pantoea ananatis AJ13355] Length = 589 Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats. Identities = 127/624 (20%), Positives = 219/624 (35%), Gaps = 91/624 (14%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A + +A E++ L+Q++ D Y+Q + ++ D++YD+L++R + F A Sbjct: 23 CPAWTSARAVSEIAHLQQQLRQWDKAYFQQGRSLVSDADYDSLQQRLNHWQRCFTQAADE 82 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P P E V H+ ++K R R Sbjct: 83 YVPALP------EDGTQWHPVAHT-------------GVKK--VRDKRALGYWMQARNDL 121 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PKIDG +++ Y +GK V RGDG GE A R IP IP + + I ++ Sbjct: 122 WVQPKIDGVAVSLIYRQGKLVSLISRGDGLHGEQWLAKARHIPAIP-SVIDSQQGSIVLQ 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+ FL + AV A R A + + + +P + + G S Sbjct: 181 GEL------FLKMTGHQQAVDGGRNARARVAGAMMSQADSPLLAQLGIFIWSWPDGPASM 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E L ++ GF + + Q + + + LP+ DG+V Sbjct: 235 P------ERLARLSSWGFDLASHWTQ-PVQDEEDAASWRERWFHAPLPFVTDGIVVHQAA 287 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 K W I+ K+ + S+ + +D IGRTG + V ++PV + + Sbjct: 288 RPAGKYWQPGEGE--WAIAWKYQPPEVSSEVRSVDFSIGRTGKVAVVLNIQPVQLDDKTV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + +D+ GD+V V AG+ IP++ +I D Sbjct: 346 RRVNI-----------GSLKRWREQDVIAGDQVTVSLAGQGIPRLERVIWRVAQRD---- 390 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P + C T C Q L RL + NI G+ Sbjct: 391 ---------------YPEPPGSEHFTHLSCYTLTPDCHRQLLARLSWLSQKFVLNIPGVQ 435 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + + I T+ Q + G ++ R Sbjct: 436 RSTWQRLLDT----GCITHLFSWLTITPEQIAAA------AGISSERAQQIWHRFELTRQ 485 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 L R++ +LGI + + R+LA +E ++A + W +L P VG Sbjct: 486 QPLRRWVNALGIA-LPQKALRALAD---------KEWEPLLARDVQTWQAL---PGVGAR 532 Query: 608 IAQAIVEFYQNPRNICAVEALLKE 631 A+ I +Q+ + L ++ Sbjct: 533 RAERIAAQFQDAGLRKLITFLQQQ 556 >gi|251791698|ref|YP_003006419.1| NAD-dependent DNA ligase LigB [Dickeya zeae Ech1591] gi|247540319|gb|ACT08940.1| DNA ligase (NAD(+)) [Dickeya zeae Ech1591] Length = 560 Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats. Identities = 128/628 (20%), Positives = 232/628 (36%), Gaps = 91/628 (14%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 P A S +A +E++ L Q+++ D+ YY+ + + D YD L++ F Sbjct: 21 TPCPAWSSARAEREVTQLGQQLTQWDNAYYEQGRSPVDDQVYDQLRQTLATWQRCF---- 76 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 + S K +H + L+K+ +L++++ R W Sbjct: 77 -----QSDTERF-AIRLSSTGKQSHPVAHTGLKKLSEPTELKQWVARHDGLW-------- 122 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 ++PKIDG +T+ YE+GK V A RG+G GED + +R I +P+ LS + Sbjct: 123 ---VQPKIDGVAVTLVYEQGKLVSAVSRGNGRQGEDWTDKVRQINAVPQALSG-MSGRQI 178 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246 +GE+Y+ G N R +G +RR P+ + L F+ Sbjct: 179 FQGELYLP-----VTEHRQYVSGGI---NARAQVAGEMRRKQPSPLLSRLGVFIWAWPDG 230 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 L K+R +GF + QA + + + E + R+ LP+ DG+V + Sbjct: 231 PADMP----TRLAKLREMGFGLTADYTQAISSLEAAAQWRE-RWYRAPLPFVTDGVVLRQ 285 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + W ++ K+ T + +D++IGRTG +T V +L+PV + Sbjct: 286 A--KEPAGRYWQDTPAEWAVAWKYPLMNQVTEVTGVDVEIGRTGRMTVVLQLQPVMLDDK 343 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ L D+ GDRV + AG IP++ ++ R + Sbjct: 344 SVSRVNL-----------GSVGRWRQWDVLPGDRVSISLAGLGIPRLDAVVW--RAAVRE 390 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEG 485 + P+ P C C Q L RL R+ ++ G Sbjct: 391 SITVPAVSPFD-----------------VFSCLQWSRECQPQFLARLVWMSGRNGLSLSG 433 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 + + + A + L+ Q + F + +Y + + Sbjct: 434 ISEATWRRLAQRGTLADVVS----WLALEPAQLAAAGD------FNEQQAARIYRQLQQA 483 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R L R++ +LG+ + A S + Q + +W +G Sbjct: 484 RRQPLRRWLLALGL---PVPSSARYALEGASLEQLQQ-------RSIVEWQQFS---GIG 530 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVS 633 AQ I +F +P + + L ++ Sbjct: 531 ARRAQRIRDFLHHPEIVRQLAWLNEQGV 558 >gi|213859393|ref|ZP_03385097.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 109 Score = 174 bits (442), Expect = 3e-41, Method: Composition-based stats. Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 3/107 (2%) Query: 615 FYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ N + LL E + + + + S K +V TG+L ++ R A+ + Sbjct: 1 FFAEESNRDVIGQLLAEGVHWPAPVVINAQEIDSPFAGKTVVLTGSLSQMSRDDAKARLV 60 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 61 ALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 107 >gi|330955486|gb|EGH55746.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae Cit 7] Length = 296 Score = 174 bits (442), Expect = 4e-41, Method: Composition-based stats. Identities = 56/255 (21%), Positives = 103/255 (40%), Gaps = 20/255 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R ++E + + + D + F + + + G Sbjct: 57 VLARSLASLERVQQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRSVIDALLGECGLQL 114 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + +LE I L I VG A+ LA + + + D Sbjct: 115 QDQGELGAEFAASTTLEGMIDKLHIPSVGPGAAQKLADRFGTLEAIISA----------D 164 Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649 WL + +P + A+++ +F+ + N A+EA LK+ +K V + Sbjct: 165 WLDMRQALP---EKQAKSVRDFFDDSANAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 221 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 + V TG+L+++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ ++ Sbjct: 222 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 281 Query: 710 NEEQFLFLLQQYNTT 724 +E+ L L + Sbjct: 282 DEDALLKRLAELGVA 296 Score = 68.7 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 21/149 (14%) Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 PAD++ L+ Q + GF ++S L +I R +L RFI++LGI VG E Sbjct: 1 PADLYKLKYEQIID------LEGFAEISSNKLLKAIADSRQPTLARFIYALGIPDVGEET 54 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 A+ LA+ S + Q + + L +P VG +A I F+++ N ++ Sbjct: 55 AKVLARSLASLERVQQALPEV----------LTYLPDVGLEVAYEIHSFFEDEHNRSVID 104 Query: 627 ALLKEVSPSIGRHEK-----NVSSEIENK 650 ALL E + + S+ +E Sbjct: 105 ALLGECGLQLQDQGELGAEFAASTTLEGM 133 >gi|238797649|ref|ZP_04641145.1| DNA ligase B [Yersinia mollaretii ATCC 43969] gi|238718513|gb|EEQ10333.1| DNA ligase B [Yersinia mollaretii ATCC 43969] Length = 565 Score = 174 bits (441), Expect = 4e-41, Method: Composition-based stats. Identities = 107/622 (17%), Positives = 216/622 (34%), Gaps = 97/622 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 S E+ E+ SL++++ D Y+Q ++ D YD L+ + + R Sbjct: 27 CPEWSTERVSLEVHSLQKQLDQWDAIYHQQGVSLLTDDLYDQLQAKLQGW-----QVCRG 81 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + + ++ K +H + L+K+ + +L ++ R + W Sbjct: 82 QPDDTENRRV-----PGHGKFSHPVAHTGLKKLKDEAELANWMQRREKIW---------- 126 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y+ GK RGDG G++ S I IP ++ ++ Sbjct: 127 -VQPKVDGIAVTLVYQNGKLAQLLSRGDGLKGQNWSDKASFITAIP-QTIAAAAPMLTLQ 184 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R++ +G L R + + + L F+ + Sbjct: 185 GELFLQREGHKQA--------QFGGVNARSSVAGALMRKSSSPLLAQLGIFIWAWPDGPK 236 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E ++++ +GFP+ + + ++ LP+ DG+V + +E Sbjct: 237 SM----MEKNRRLQKMGFPLTAQYSK-PVSSAKDVAQWRERWYQTPLPFVTDGVVIRQEE 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W ++ K+ +Q T + DI IGRTG +T + ++ PV I I Sbjct: 292 EPAGRYWQAVPGP--WSVAWKYPPQQKMTEIKDIHFTIGRTGKITVILQVSPVKIDDKWI 349 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI +GD+V + AG+ IP++ +++ Sbjct: 350 RRVNI-----------GSIARWRQWDITLGDQVTIALAGQGIPRLDNVVWRVSQ------ 392 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG--LACSAQQLERLKHFVSRDAFNIEGL 486 +L P C C Q L RL ++ + Sbjct: 393 -------------RHELTPPERDKFHQLSCFRHLPHECEPQFLSRLIWLSGPKGLDMRSI 439 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G ++ +L Q + +I G ++Y + + Sbjct: 440 GGGLWRELIHH----GLVKDLVGWLSLTTDQ------LADIPGVSLERAEDIYQQFQRAK 489 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +++ +LG V + A S ++ VG Sbjct: 490 QKPFSQWLQALGFPRVVSSDDHWHALQRKSITEWSLAS------------------GVGL 531 Query: 607 IIAQAIVEFYQNPRNICAVEAL 628 + A+ I+ F +P + L Sbjct: 532 MRAKQIIHFLHHPEVQAIADFL 553 >gi|146309759|ref|YP_001174833.1| NAD-dependent DNA ligase LigB [Enterobacter sp. 638] gi|257096556|sp|A4W502|LIGB_ENT38 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|145316635|gb|ABP58782.1| DNA ligase (NAD(+)) [Enterobacter sp. 638] Length = 556 Score = 174 bits (441), Expect = 4e-41, Method: Composition-based stats. Identities = 127/627 (20%), Positives = 223/627 (35%), Gaps = 99/627 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A +E++ L +IS +D Y+Q K + D YD L R F + Sbjct: 20 CPAWSHAKAEQEIAGLNAQISRWNDAYWQEGKSDVSDEIYDQLNTRLKQWQQCFNHEPAT 79 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 ED + H + K+ E+LR+++ W Sbjct: 80 EDI---------PPANG--TLRHPFAHTGVHKVSGKEELRQWMHSRRDLW---------- 118 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y KGK V A RGDG GED +A ++AIP++P + + E ++ Sbjct: 119 -VQPKVDGVAVTLVYRKGKLVQAISRGDGVKGEDWTARVQAIPSVPLNVKGVLSE-SVLQ 176 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ E + N R +G++ R N + L F+ + Sbjct: 177 GEIFLR--------CERHIQQQMGGMNARAKVAGMMMRQNNKTVLENLGVFIWAWPDGPQ 228 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + + R +T + E + P+ DG+V + Sbjct: 229 SMP---QRLSELTKAGFTLTAQYTRAVSTADEVEKNRKEWLTSSL--PFVTDGIVVRSSI 283 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + +Q W+++ K++ + I IGRTG ++ VA LE + + + Sbjct: 284 EPVGEQWLPGEGD--WVVAWKYSPVSQVAEVNAIQFAIGRTGKISVVAVLESIQLDDKRV 341 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV--NERHPDAQ 426 L DI GD++LV AG+ IP+V ++ N+R A Sbjct: 342 KRVNL-----------GSVSRWQALDIAPGDQILVSLAGQGIPRVDKVVWRGNDRKKPAP 390 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P S A+ C Q RL S+ N+EGL Sbjct: 391 PASQYHSLTCF---------------YASPECLE------QFFARLVWLSSKQILNMEGL 429 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G ++ + + +IE G L+ R Sbjct: 430 GDSSWRLLHQT----------YHFEHIFSWLAVTQEQIEKTSGLNPARRLQLWHRFELAR 479 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +++I +LGI + A +L+ + + + W L P +G Sbjct: 480 HHPFKKWIKALGI-PLPQAAADALSVH---------SWRQLQDKDAVSWNQL---PGIGT 526 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVS 633 A+ +VEF + + + L + Sbjct: 527 EKARKLVEFVHDSQ----ITRLATWLG 549 >gi|242241341|ref|YP_002989522.1| NAD-dependent DNA ligase LigB [Dickeya dadantii Ech703] gi|242133398|gb|ACS87700.1| DNA ligase (NAD(+)) [Dickeya dadantii Ech703] Length = 575 Score = 174 bits (441), Expect = 5e-41, Method: Composition-based stats. Identities = 110/617 (17%), Positives = 216/617 (35%), Gaps = 91/617 (14%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A +E+ L +++ D YY + I D YD L++R + F + P Sbjct: 34 AEQEMERLGHQLAVWDRAYYGAGESQIDDHTYDQLRKRLETWQACFHADQTAFPIPLPTE 93 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 K H + L+K+ +LR++I + W ++PKIDG Sbjct: 94 ----------GKTPHPVAHTGLKKLSEAGELRRWIAQHRGLW-----------VQPKIDG 132 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 +T+ YE+GK V A RG+G+ GED + +R +P +P+ L P+ + ++GE+Y+ Sbjct: 133 VAVTLVYEQGKLVSAVSRGNGYRGEDWTEKVRRMPQVPQQLP-TAPDQLVLQGELYLGMP 191 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 + AN R +G +RR P+ + + FV + + + Sbjct: 192 G--------HRQQQDGGANARARVAGEMRRSQPSSLASRIGVFVWEWPDGPQSMPERLSQ 243 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + + + + LP+ DG+V + + Sbjct: 244 LRSLGFEMTERYTQPITTLEDAARWRERWYR-----EPLPFATDGVVLRQAQ--EPAARY 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + + W ++ K+ + T + ++I +GRTG + V L+P+ + I + Sbjct: 297 WQNKPAEWAVAWKYPLTRLVTEVEGVEIAVGRTGNMAVVLTLQPLTLDDKTIRRVNV--- 353 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+ GD+V + AG+ IP++ ++ Sbjct: 354 --------GSISRWRQWDVLPGDQVSIGLAGQGIPRLDAVVWR----------------- 388 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 + V ++ + C C +Q + RL + + G+G+ Sbjct: 389 --TSVREPMSVPENVGFSEFTCLTWREGCRSQFIARLVWLSGKRGLGLTGVGEGVWQRLV 446 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + + ++ + G G +Y + R L R++ Sbjct: 447 LRGMLPDVVS----------WLALTPAQLIGLGGLGATQGEKVYQQFQRARRQPLSRWLM 496 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGI A A + +S Q + +W +G A I +F Sbjct: 497 ALGI---PVPRAAQGALHGVSLIALQQ-------RSLAEWRQFS---GIGVARAGNIRDF 543 Query: 616 YQNPRNICAVEALLKEV 632 P ++ L+++ Sbjct: 544 LHQPEIAALLQWLVRQG 560 >gi|261823684|ref|YP_003261790.1| NAD-dependent DNA ligase LigB [Pectobacterium wasabiae WPP163] gi|261607697|gb|ACX90183.1| DNA ligase (NAD(+)) [Pectobacterium wasabiae WPP163] Length = 563 Score = 173 bits (439), Expect = 7e-41, Method: Composition-based stats. Identities = 123/616 (19%), Positives = 223/616 (36%), Gaps = 94/616 (15%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF-PD-LARSEDPNGPLN 76 KE+++L Q++ DD YY K + D YD L+ + + F P P+ Sbjct: 37 KEITALRQQLERWDDVYYTEGKSPVEDDVYDQLREQLNQWLSCFQPQNAIPVRLPDNGKQ 96 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 + H + L+K+ + L ++I + W ++PK+DG Sbjct: 97 R-------------HPVAHTGLKKVSDRGRLVQWIAQREGLW-----------IQPKVDG 132 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 IT+ Y+ GK V A RG+G GED + +R IP IP +L+ + ++GE+++ Sbjct: 133 VAITLVYQHGKLVSAVSRGNGLQGEDWTEKVRLIPGIPHLLTGAPSSL-VLQGELFLKMT 191 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 D G N R+ +G +RR P+ + ++ FV + E Sbjct: 192 D-----HRQYTQGG---VNARSVVAGEMRRHQPSPVLSQISLFVWEWPDGPKAMP----E 239 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+K++ +GF + G A + S LP+ DG+V + + + Sbjct: 240 RLEKLKEMGFAMTAGYTHAIESFA-DAEKWRHYWHHSPLPFVTDGVVIRQTKEPQGRYWR 298 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + W I+ K+ + D+ +GRTG + V +L P+ + L++ + Sbjct: 299 NTSAD--WAIAWKYPPVHQVAEVTDVAFSVGRTGKIAVVLKLNPMKLDDKLVSRVNV--- 353 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D++ GDRV V AG+ IP++ Sbjct: 354 --------GSLSRWKQWDVQPGDRVSVSLAGQGIPRL------------------DSVAW 387 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 + + P A C Q L RL N+ G+ + Sbjct: 388 RGAERPALVPPNEHDFHAFSCFRYSAVCQQQFLARLVWLSGEHGLNLAGMRDGMWLRLMQ 447 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + + + ++ + G GD ++Y S+ R + L R++ + Sbjct: 448 HDLLG----------DVLAWLSLTEAQLNAVNGMGDKRARDIYTSLQSTRQVPLSRWLLA 497 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI ARS + + + W +G+ A+ I+ F Sbjct: 498 LGIP--VPRSARSALDH--------ADWLALQQRTAQQWRQFS---GIGERRAEEIMAFL 544 Query: 617 QNPRNICAVEALLKEV 632 +P + + L +E Sbjct: 545 NHPIVVEFIARLEREG 560 >gi|296100486|ref|YP_003610632.1| NAD-dependent DNA ligase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295054945|gb|ADF59683.1| NAD-dependent DNA ligase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 556 Score = 173 bits (438), Expect = 9e-41, Method: Composition-based stats. Identities = 121/620 (19%), Positives = 207/620 (33%), Gaps = 94/620 (15%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S +A KE+++L +I DD Y+Q + D YD L R H F P+ Sbjct: 24 SQARAEKEIATLSAQIKRWDDAYWQQGISEVNDEVYDQLNGRLKQWQHCF----GHASPD 79 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 + ++ H + + K+ + E+L +++ W ++P Sbjct: 80 -------AALPALTGRIKHPVAHTGVHKVSSKEELGQWMHARRNLW-----------MQP 121 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG +T+ Y G A RGDG GED ++ +R IP++P+ L ++GE++ Sbjct: 122 KVDGVAVTLVYRGGTLAQAISRGDGLKGEDWTSQVRLIPSVPQHLYGA-LANSVLQGELF 180 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + + + + G A A ++ ++ + G + A+ Sbjct: 181 WQRENHI----QQQMGGMNARAKVAGAMMRQQDNAFLREVGVFIWAWPDGPKEMKTALAE 236 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 PV + + LP+ DG+V + Sbjct: 237 LSDAGFTLTARYTLPVEHIEAVEKQRSAWH---------TAALPFATDGIVVRSA--DEL 285 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 W+++ K+ + DI +GRTG + VA LEPV + + + Sbjct: 286 PGENWLPGEGSWVVAWKYPPVAQVAEVRDIHFTVGRTGKIAVVAGLEPVRLDDKQVQRVS 345 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 L DI GD++ V AG+ IP+ Sbjct: 346 L-----------GSVGRWQRLDIAPGDQIQVSLAGQGIPRFD------------------ 376 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + R + C C Q RL S+ +I GLG+ Sbjct: 377 --KVVWRGTDRQKPEPPVPQYHSLSCFYASPECMEQFFARLTWLSSKQGLDIAGLGESGW 434 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 ++ A L + Q +T GF L+ N R Sbjct: 435 RALWQ----AHRFEHIFSWLLLTQAQLQTT------PGFSAARGLALWHQFNLVRERPFI 484 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R+I ++G+ A A LS+Q Q + DW +L P G+ A+ Sbjct: 485 RWIMAMGV---PLAQATLKAAGELSWQTMHQ-------RSAMDWQTL---PGTGEEKARQ 531 Query: 612 IVEFYQNPRNICAVEALLKE 631 IV + P + + L E Sbjct: 532 IVNWLHAPE-VDVLAKWLAE 550 >gi|289804479|ref|ZP_06535108.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 119 Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 5/124 (4%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P ILD+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSTENVIWCCELK 115 Query: 134 IDGT 137 +DG Sbjct: 116 LDGL 119 >gi|50119005|ref|YP_048172.1| NAD-dependent DNA ligase LigB [Pectobacterium atrosepticum SCRI1043] gi|81827264|sp|Q6DB58|LIGB_ERWCT RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|49609531|emb|CAG72964.1| putative DNA ligase [Pectobacterium atrosepticum SCRI1043] Length = 563 Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats. Identities = 123/616 (19%), Positives = 220/616 (35%), Gaps = 90/616 (14%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A KE+ +L Q++ DD YY K I D YD L+ + + + F P Sbjct: 35 ASKEIDALRQQLEQWDDVYYTEGKSPIEDDVYDQLREQLNQWSQCF----------QP-Q 83 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 + K H + L+K+ + L ++I + W ++PK+DG Sbjct: 84 NVIPARLPDNGKQPHPVAHTGLKKLSDRVQLVQWIVQREDLW-----------VQPKVDG 132 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 +T+ Y+ GK V A RG+G GED + R IP IP +LS ++GE+++ Sbjct: 133 VAVTLVYQHGKLVSAVSRGNGLQGEDWTEKARLIPDIPHLLSGAPSS-FVLQGELFLKMT 191 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 D A G N R+ +G +RR P+ + + FV + E Sbjct: 192 D-----HRQYAQGG---VNARSIVAGEMRRHQPSPVLSQIGLFVWEWPDGPKAMP----E 239 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L K++ +GF + A S LP+ DG+V + + + Sbjct: 240 RLDKLKEMGFAMTADYTHAIESFA-DVEKWRDHWYHSPLPFVTDGVVIRQTKEPQGRYWR 298 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + W I+ K+ ++D+ +GRTG + V ++ P+ + ++ + Sbjct: 299 NTSAD--WAIAWKYPPVHQVAEVVDVAFSVGRTGKVAVVLKISPLKLDDKSVSRVNV--- 353 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+ GDRV V AG+ IP++ +++ Sbjct: 354 --------GSLSRWKQWDVLPGDRVSVSLAGQGIPRLDNVVW------------------ 387 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 + ++P A + C Q L RL N+ G+ + Sbjct: 388 RGTERPVIVSPDEHNFHAFSCFRYSVVCQQQFLARLVWLSGEHGLNLAGMRDGMWLRLMQ 447 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + + + ++ + G GD ++Y S+ R SL ++ + Sbjct: 448 HDLLGDVLS----------WLYLTEAQLNAVNGMGDKRARDIYMSLQSARQKSLSHWLLA 497 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI V +L N +A + +G+ A+ I+ F Sbjct: 498 LGI-PVPRSAISALNNV------------NWLALQQRTAQQWRQFSGIGERRAEEIMAFL 544 Query: 617 QNPRNICAVEALLKEV 632 +P + + L E Sbjct: 545 NHPIVMELIARLDLEG 560 >gi|293393631|ref|ZP_06637941.1| NAD-dependent DNA ligase adenylation domain protein [Serratia odorifera DSM 4582] gi|291423966|gb|EFE97185.1| NAD-dependent DNA ligase adenylation domain protein [Serratia odorifera DSM 4582] Length = 566 Score = 173 bits (437), Expect = 1e-40, Method: Composition-based stats. Identities = 114/618 (18%), Positives = 218/618 (35%), Gaps = 94/618 (15%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E+ E+++LEQ+++ D YYQ + +I D YD+L+++ P P Sbjct: 32 ERLSLEMTALEQQLTRWDVAYYQQGQGLIDDELYDSLRQKLRLWQSCAGSGDGDALPALP 91 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +G K H + L K+ + + + +++ W ++PK+ Sbjct: 92 ---VG--------KTPHPVAHTGLRKLADRQAVVQWMRGRDALW-----------VQPKV 129 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +T+ Y++G + A RGDG GED +++IP +P L PE + ++GE+ Sbjct: 130 DGVAVTLVYQRGTLIGAISRGDGKQGEDWLEKVKSIPAVPSSLPDA-PERVVLQGEL--- 185 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 FL + D + A R A + + +R +P L + G + Q Sbjct: 186 ---FLIMTDHQQNLTGGVNARSRVAGALLRQRPSPLLAQIGLFVWGWPDGPATMAERLRQ 242 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 + LGFP+ ++ + ++ LP+ DG+V D + Sbjct: 243 ------LATLGFPLAQAYTRSVNDVDG-VEHWRSHWHQNPLPFVTDGVVIHQDSPPQGRY 295 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 + W ++ K+ Q R+ + +IGRTG + V L+P+ + + + Sbjct: 296 WRNKPAE--WAVAWKYPAVQQVARVNKVIFRIGRTGKIAVVLALDPIRLDDKWVRRVNV- 352 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 + + GD V + G IP + D++ Sbjct: 353 ----------GSLPLWQQLNALPGDHVAISLQGHGIPYLRDVVWRAVE------------ 390 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGL-ACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 + L A C C Q + RL N+ G+ + Sbjct: 391 -------RQPLTVPDANRYHALSCFELQPGCRQQLIARLVWLSGAQGLNLRGVNEASWQA 443 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + ++ D TL +Q + + G G ++Y R R+ Sbjct: 444 LIEQS----LVKNLVDWLTLTPQQLMA------VPGIGHKRAQDIYQQFRLARQRPFARW 493 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + +LG ++ L +++ + + +G A I Sbjct: 494 LIALGAPLTPSQS--------LGVEHWVPALQQTTQAWQKNA-------GIGAKRANNIR 538 Query: 614 EFYQNPRNICAVEALLKE 631 F+Q+P +AL ++ Sbjct: 539 AFFQHPSVRQLADALAEQ 556 >gi|289679601|ref|ZP_06500491.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae FF5] Length = 261 Score = 173 bits (437), Expect = 1e-40, Method: Composition-based stats. Identities = 55/254 (21%), Positives = 103/254 (40%), Gaps = 18/254 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 ++R ++E + + + D + F + + + G Sbjct: 21 VLARSLASLERVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRSVIDALLGECGLQL 78 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + +LE I L I VG A+ LA + + + D Sbjct: 79 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISA----------D 128 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENK 650 WL + + + + A+++ +F+ + N A+EA LK+ +K V + + Sbjct: 129 WLDMRQA--LSEKQAKSVRDFFDDSANAERARAIEAQLKDFGMHWRSEKKTVEGLPLAGQ 186 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 V TG+L+++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++ Sbjct: 187 TWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLD 246 Query: 711 EEQFLFLLQQYNTT 724 E+ L L + Sbjct: 247 EDALLKRLTELGVA 260 Score = 59.8 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 15/105 (14%) Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFI++LGI VG E A+ LA+ S + Q + + L +P VG +A Sbjct: 3 ARFIYALGIPDVGEETAKVLARSLASLERVKQALPEV----------LTYLPDVGLEVAY 52 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650 I F+++ N ++ALL E + + S+ +E Sbjct: 53 EIHSFFEDEHNRSVIDALLGECGLQLQDQGELGAEFAASTTLEGL 97 >gi|289623888|ref|ZP_06456842.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646918|ref|ZP_06478261.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aesculi str. 2250] gi|330869835|gb|EGH04544.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 561 Score = 173 bits (437), Expect = 1e-40, Method: Composition-based stats. Identities = 113/623 (18%), Positives = 204/623 (32%), Gaps = 102/623 (16%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PDLARSED 70 +AR E+++L+Q+++ DD Y++ I D YD +++ + F P+ + Sbjct: 31 AKARSEVTNLQQQMAAWDDSYHRQGISHIPDELYDQARQKLNLWRSCFAVSTPEADPLKT 90 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 GPL H +P + K+ + ++ ++ W + Sbjct: 91 AVGPL--------------PHPVPHTGVNKLADESSVKDWLKGRKDLW-----------I 125 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ YEKG+ V A RGDG G++ ++ R I IP L + + ++GE Sbjct: 126 QPKVDGVAVTLVYEKGQLVQAISRGDGRKGQNWTSQARLIKAIP--QRLPQHDSLILQGE 183 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +Y D + N R+ +G+L +G + Sbjct: 184 LYWRLTDHIQATS--------GSVNARSKVAGMLA------RQTISPQQADAIGLFVWDW 229 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 G +M Q++ L G + P + + Sbjct: 230 PNGPTDMAQRLAGLQAMGFEGSEAYTHSLENHVQAARWREHWYRNPLPFATDGVIMRQGQ 289 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +A +P W+ + K QA + + IGR+G +TPV L PV + ++ Sbjct: 290 RPPMQRWQASAPYWIAAWKHPYAQALAEVRKVSFNIGRSGRITPVLELTPVRLDDRTVSR 349 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 + DIR GD+V V AG IP++ +I Sbjct: 350 IS-----------TGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVISRAAERVEMII-- 396 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 C C +Q RL + + G+G Sbjct: 397 -----------------PQADDFHELSCWQATPGCESQFRARLIWLSGKKGLALSGVGPG 439 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 D ++ I +L + ++ NI GF + S L S+ R Sbjct: 440 TWDKLIENG----------QIESLLDWMTLNHAELANIPGFAEHSSAKLLASLQTARERP 489 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 + ++ ++G+ G+ +N P +G A Sbjct: 490 FQTWLKAIGLPPTGSAT----------------LPDNWQELAGRSVEQWQAEPGIGPGRA 533 Query: 610 QAIVEFYQNPRNICAVEALLKEV 632 + F+Q P L + Sbjct: 534 AKLRSFFQAPEVQALSHQLQAQG 556 >gi|270265241|ref|ZP_06193503.1| DNA ligase B [Serratia odorifera 4Rx13] gi|270040875|gb|EFA13977.1| DNA ligase B [Serratia odorifera 4Rx13] Length = 567 Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats. Identities = 115/619 (18%), Positives = 214/619 (34%), Gaps = 93/619 (15%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 E+ + E+++L+ ++ D YYQ +I D YD+L+++ + H L R E+P+ Sbjct: 32 PERLQLEITALKNQLERWDVAYYQQGDSLIEDQVYDSLRQKLQ-LWHRCAGLERVEEPSS 90 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 L K H + L K+ + + +++ W ++PK Sbjct: 91 ---------LLPAGKTPHPVAHTGLHKLADPAAVDQWLRGRSDVW-----------VQPK 130 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG IT+ Y G+ A RG+G GE+ +RAIP IP + P + ++GE+++ Sbjct: 131 VDGVAITLVYRDGELAAAVSRGNGLQGENWLEKVRAIPAIPAAVKDA-PATLILQGELFL 189 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 N N R+ +G L + + + + + FV + Sbjct: 190 MVNGHQQKIH--------GGINARSTVAGALMKNRLSPVLQQIGLFVWAWPDGPKEM--- 238 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 + LQ++ +GFP+ Q + + R LP+ DG+V + Sbjct: 239 -TQRLQQLAAMGFPLALAYSQPVSSLD-DVRQWRERWYREALPFVTDGVVIHQARSPQGR 296 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 + W ++ K+ Q R+ D++ +GRTG + V +L+P+ + ++ L Sbjct: 297 YWQAKPGD--WAVAWKYPPVQQVARVNDVEFSVGRTGKIAVVLKLDPLRMDDKWVSRVNL 354 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 + GD+V + G IP++ + Sbjct: 355 -----------GSLPRWRQWAVVPGDQVAISLMGNGIPRLDKVAWR-------------- 389 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGL-ACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 + + + A C L C Q L RL + G+ + Sbjct: 390 -----TTERIEPSAPAADRYHALSCFTWLPECRQQFLARLVWLGGPQGLGLHGVSESTWQ 444 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 +R D L Q S G GD +++ R R Sbjct: 445 VLIDQ----GLVRHLLDWLVLTPEQLMSA------PGIGDKRGRSIHRQFQLARQQPFAR 494 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 ++ +LG+ + + S+ Q +G A+ I Sbjct: 495 WLIALGVPLSLQQT-----QALKSWHQIRQLPVGEWRKMT----------GIGAKKAEQI 539 Query: 613 VEFYQNPRNICAVEALLKE 631 F Q+P + V L + Sbjct: 540 TGFLQHPPFLTLVSTLEAQ 558 >gi|325271326|ref|ZP_08137858.1| NAD-dependent DNA ligase LigB [Pseudomonas sp. TJI-51] gi|324103542|gb|EGC00857.1| NAD-dependent DNA ligase LigB [Pseudomonas sp. TJI-51] Length = 562 Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats. Identities = 117/630 (18%), Positives = 221/630 (35%), Gaps = 95/630 (15%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + +Q E++ L + + DD Y++ ++ D YD ++R + F Sbjct: 27 NPQQVASEVAQLRKTLGSWDDHYHRQGIALVPDELYDQSRQRLAQLQQCF------GLAG 80 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 GP + + V H IP ++K+ + +++++ ++P Sbjct: 81 GP-----APLANAGGPVPHPIPHTGIDKLHDRHAVQRWLA-----------GKADVWVQP 124 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG +++ Y +G+ V RG+G G D S I + +I R L + ++++GE+Y Sbjct: 125 KVDGVAVSLIYREGRLVQLISRGNGAQGHDWSRHIPQLGSITRQLPQAM--DLQLQGELY 182 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + N + A R+ +G+L R + + Sbjct: 183 LRLNA--------HVQAQAGGAKARDTVAGLLARKRLSSEQGEAVGLF---VWDWPQGPE 231 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L ++ LGF + A + + E + LP+ DG+V + Sbjct: 232 QQAERLAQLAQLGFADSQRYSVAINTLDEAAQWREH-WYHAALPFASDGVVLRQGSR--P 288 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +A++P W+ + K+ QA + D+ ++GRTG +TPV L PV + +T + Sbjct: 289 PAERWQAKAPYWLAAWKYPYMQALAEVRDVRFRVGRTGRVTPVLHLLPVTLDNRRVTQVS 348 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 + DIR GD+V V AG IP++ ++ Sbjct: 349 M-----------GSLARWHSLDIRPGDQVAVSLAGLTIPRLEQVVHRAVE---------- 387 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + AH C + C Q + RL + + G Sbjct: 388 ---------RVPVAAPAADQYHAHSCWQASVGCEEQFIARLAWLSGKHGLALLRTGPGTW 438 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 A D L T++ + G + + L S N R S + Sbjct: 439 RRLV----AAGLATSLTDWLQLDA------TRLSEVAGISERTAAQLRSSFNDARTRSFD 488 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 +++ LG + + + A D W +L P +G+ A+ Sbjct: 489 QWLRGLGAP-------------LPNGMQITGDWQALAARTADTWQAL---PGIGEKRARQ 532 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 +V+F+ L + R ++ Sbjct: 533 LVDFFAAAEVRAIATQLGEHGIEGFERPKQ 562 >gi|320326326|gb|EFW82379.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. glycinea str. B076] Length = 561 Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats. Identities = 112/623 (17%), Positives = 204/623 (32%), Gaps = 102/623 (16%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PDLARSED 70 +AR E+++L+Q+++ +D Y++ I D YD +++ + F P+ + Sbjct: 31 AKARSEVTNLQQQMAAWNDSYHRQGISHIPDELYDQARQKLNLWRSCFAVPPPEADPLKT 90 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 GPL H + + K+ + ++ ++ W + Sbjct: 91 AVGPL--------------PHPVAHTGVNKLADESSVKDWLEGRNDLW-----------I 125 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ YE G+ V A RGDG G+D ++ R I TIP L PE ++GE Sbjct: 126 QPKVDGVAVTLVYENGQLVQAISRGDGRKGQDWTSQARLIKTIP--QHLPQPESAILQGE 183 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +Y +D N R+ +G+L +G + Sbjct: 184 LYWRLDD--------HIQSASGSVNARSKVAGLLA------RQTISPQQADAIGLFVWDW 229 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 G +M Q++ L + + + P + + Sbjct: 230 PNGPGDMAQRLAGLQAMGFEDSAAYSHPLENYAKAARWREHWYRNPLPFATDGVIMRQGQ 289 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +A +P W+ + K QA + + +GR+G +TPV L PV + ++ Sbjct: 290 RPPMQRWQASAPYWIAAWKHPYAQALAEVRKVSFNVGRSGRITPVLELTPVRLDDRTVSR 349 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 + DIR GD+V V AG IP++ +I Sbjct: 350 IS-----------TGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVISRAAERVEMII-- 396 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 C C +Q RL + + G+G Sbjct: 397 -----------------PQADDFHELSCWQATPGCESQFRARLIWLSGKKGLALPGVGPG 439 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 D ++ I +L + ++ NI GF + S L S+ R Sbjct: 440 TWDKLIENG----------QIESLLDWMTLNHAELANIPGFAERSSAKLLASLQTARERP 489 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 + ++ ++G+ G+ +N P +G A Sbjct: 490 FQTWLKAIGLPPTGSAT----------------LPDNWQELAGRSVEQWQAEPGIGPGRA 533 Query: 610 QAIVEFYQNPRNICAVEALLKEV 632 + F+Q P L + Sbjct: 534 AKLRSFFQAPEVQALSHQLQAQG 556 >gi|289672514|ref|ZP_06493404.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. syringae FF5] Length = 561 Score = 172 bits (435), Expect = 3e-40, Method: Composition-based stats. Identities = 115/614 (18%), Positives = 211/614 (34%), Gaps = 96/614 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 S +AR E+++L+Q+I+ DD Y++ I D YD +++ F A S Sbjct: 25 CPDWSAAKARSEITALQQQIAAWDDSYHRQGISQIPDELYDQARQKLSLWRSCF---AVS 81 Query: 69 EDPNGPLNK-IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + PL +G H +P + K+ + ++ ++ W Sbjct: 82 TPESNPLKTAVGPLP--------HPVPHTGVNKLADEGSVKDWLKGRNDLW--------- 124 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 ++PK+DG +T+ YE+G+ V A RGDG G+D ++ R I TIP+ L + + Sbjct: 125 --IQPKVDGVAVTLVYEQGQLVQAISRGDGRKGQDWTSQARLIKTIPQQLPQAESPV--L 180 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247 +GE+Y +D + N R+ +G+L +G Sbjct: 181 QGELYWRLDDHIQAAS--------GSVNARSKVAGLLA------RQTISPQQADAIGLFV 226 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + G +M Q++ L + + P + Sbjct: 227 WDWPNGPADMAQRLAGLQAMGFEDSAAYTHPLQNYAQAARWREHWYRNPLPFATDGVIMR 286 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +A +P W+ + K QA + ++ +IGR+G +TPV L PV + Sbjct: 287 QGQRPPAQRWQASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVRLDDRT 346 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ + DIR GD+V V AG IP++ ++ Sbjct: 347 VSRIS-----------TGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVVSRAAERADMI 395 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGL 486 C C +Q RL + + G+ Sbjct: 396 I-------------------PRADDFHELSCWQATPGCESQFRARLAWLSGKKGLALPGV 436 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ + D TL + + I GF + S L DS+ R Sbjct: 437 GPGTWNTLIENGQIMGLL----DWMTLNHAELVN------IPGFAERSSAKLLDSLQTAR 486 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + ++ ++G+ G A+ +N + P +G Sbjct: 487 ERPFQTWLKAIGLPPTGG----------------ARLPDNWHELADRSVEQWQAEPGIGP 530 Query: 607 IIAQAIVEFYQNPR 620 A + F+Q+P+ Sbjct: 531 GRAARLRAFFQDPQ 544 >gi|253690568|ref|YP_003019758.1| DNA ligase (NAD(+)) [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259494926|sp|C6DJC3|LIGB_PECCP RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|251757146|gb|ACT15222.1| DNA ligase (NAD(+)) [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 562 Score = 171 bits (433), Expect = 4e-40, Method: Composition-based stats. Identities = 114/615 (18%), Positives = 224/615 (36%), Gaps = 90/615 (14%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +KE+ +L Q++ DD YY K + D YD L+ + + F P Sbjct: 35 KKEIDALRQQLEQWDDVYYTEGKSPVADDVYDQLREQLNQWLGCF----------QP-QS 83 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 + K H + L+K+ + E L ++I + W ++PKIDG Sbjct: 84 VASVRLPDHGKQLHPVAHTGLKKLSDREQLVQWIAQREDVW-----------IQPKIDGV 132 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +T+ Y+ GK A RG+G GED + +R IP IP +L+ ++ ++GE+++ D Sbjct: 133 AVTLVYQHGKLESAVSRGNGLQGEDWTEKVRLIPEIPHLLTNVPS-LLVLQGELFLKMTD 191 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 G N R+ +G +RR P+ + + F+ + + ++ Sbjct: 192 -----HRQHIQGG---VNARSVVAGEMRRHQPSPVLSQIGLFIWEWPDGPKTMPERLEKL 243 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 + + + + Y+ + LP+ DG+V + + + Sbjct: 244 TEMGFAMTADYTHAIGSFADAEKWHHYWY-----HNPLPFVTDGVVLRQTKEPQGRYWRN 298 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 + W I+ K+ ++D+ +GRTG L V +L + + ++ + Sbjct: 299 TSAD--WAIAWKYPPFHQVAEVIDVVFSVGRTGKLAVVLKLNLLKLDDKSVSRVNV---- 352 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 D+ GDRV V AG+ IP++ +++ Sbjct: 353 -------GSLSRWKQWDVLPGDRVSVSLAGQGIPRLDNVVWRS----------------- 388 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 + + ++P A C Q L RL N+ G+ + Sbjct: 389 -TERLPIVSPSEHDFHAFSCFRYSTVCQQQFLARLVWLSGEHGLNLTGVRDGMWLRLMQH 447 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + +L Q + + G GD ++Y S+ R + L R++ +L Sbjct: 448 ----GLLEDVLSWLSLTEAQLNA------VTGMGDKRARDIYKSLQSARQMPLSRWLLAL 497 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 G+ + I+ A ++++ Q + +G+ A+ I+ F + Sbjct: 498 GLPVPRSAIS---ALNHVNWLALQQWTAQQWRQFS----------GIGERRAEEIMAFLK 544 Query: 618 NPRNICAVEALLKEV 632 +P + + L E Sbjct: 545 HPAVVEFIARLDAEG 559 >gi|207723347|ref|YP_002253746.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) (partial sequencecentral part) protein [Ralstonia solanacearum MolK2] gi|206588546|emb|CAQ35509.1| probable dna ligase (polydeoxyribonucleotide synthase [nad+]) (partial sequencecentral part) protein [Ralstonia solanacearum MolK2] Length = 228 Score = 171 bits (432), Expect = 5e-40, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 17/166 (10%) Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LG+ + A ++ LA + A D L +P ++ +++ + Sbjct: 70 LGVPKLTATRSKQLATLVPTLAQLATA----------DAAQLEGLP---AEVSASLLGWL 116 Query: 617 QNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + + ++AL E+ ++ E + K +V TGTL + R A+ + Sbjct: 117 EADGHRARLAQLDALRAELLAAMPA-ETAEDGALSGKTVVLTGTLPNLTRDAAKAMLEAA 175 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GA VS +S+KTD ++ G+ GSKL KA++LGVK+++E L LLQ Sbjct: 176 GAKVSGSVSKKTDYVVAGEEAGSKLAKAEELGVKVLDEAGMLALLQ 221 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 26/47 (55%) Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 L+ +P VG +A+AI +F+ P+N A++ALL G H + Sbjct: 10 LLTLPDVGATVAEAIADFFDEPKNQQALDALLAAGVAPQGEHPPSAK 56 >gi|271502618|ref|YP_003335644.1| DNA ligase [Dickeya dadantii Ech586] gi|270346173|gb|ACZ78938.1| DNA ligase (NAD(+)) [Dickeya dadantii Ech586] Length = 561 Score = 171 bits (432), Expect = 6e-40, Method: Composition-based stats. Identities = 122/631 (19%), Positives = 233/631 (36%), Gaps = 93/631 (14%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 + P A S +A +E++ L Q+++ D+ YY + + D YD L++ F Sbjct: 20 KAEPCPAWSPARAEQEIARLGQQLTQWDNAYYDRGQSPVDDQVYDQLRQTLATWQVCF-- 77 Query: 65 LARSEDPNGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 D + G ++ S K H + L+K+ +L+++I + W Sbjct: 78 ---QADAD------GFAVSLPSSGKQPHPVAHTGLKKLTEPAELKQWIAQHRNLW----- 123 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 ++PKIDG +T+ YE+GK V A RG+G GED + +R + +P+ LS I Sbjct: 124 ------IQPKIDGVAVTLVYEQGKLVSAISRGNGRQGEDWTDKVRQMNAVPQQLSG-ISG 176 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243 + ++GE+Y+S + N R +G +RR P+ + ++ F+ Sbjct: 177 RLVLQGELYLS--------VTAHRQQQTGGINARAQVAGEMRRKQPSPLLSRIDVFIWAW 228 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 + L +R LGF + Q + + E + ++ LP+ DG+V Sbjct: 229 PDGPADMS----TRLAALRELGFGLTADYTQPIASFEEAARWRE-RWYQAPLPFVTDGVV 283 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 + + W ++ K+ T + +D++IGRTG +T V +++P+ + Sbjct: 284 LHQSQ--EPAGRYWQDTPAEWAVAWKYPLVNRVTEVTGVDVEIGRTGRMTVVLQVQPMML 341 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 ++ L D+ GDRV + AG IP++ ++ Sbjct: 342 DDKNVSRVNL-----------GSVSRWRQWDVLPGDRVSISLAGLGIPRLDAVVWRGAVR 390 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFN 482 +A S C AC Q L RL R+ + Sbjct: 391 EAISVPVAS-------------------SFDVFSCLQWSKACQPQFLARLVWMSGRNGLS 431 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 + G+ + + + L+ Q + F V +Y Sbjct: 432 LSGISEGTWRRLIQQGKVIDVVS----WLALEPAQLAAGGD------FDKQHVERIYHQF 481 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + R L +++ +LG+ + + ++L + + W Sbjct: 482 QRARRQPLRQWLLALGL-PLPSSARQALD---------GASFEQLQQRSVAQWQQFS--- 528 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 +G AQ I +F +P + + L ++ Sbjct: 529 GIGVRRAQRIRDFLHHPEIVRQLTWLNEQGV 559 >gi|104783946|ref|YP_610444.1| NAD-dependent DNA ligase LigB [Pseudomonas entomophila L48] gi|123255217|sp|Q1I3X5|LIGB_PSEE4 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|95112933|emb|CAK17661.1| putative DNA ligase, NAD-dependent [Pseudomonas entomophila L48] Length = 557 Score = 170 bits (431), Expect = 6e-40, Method: Composition-based stats. Identities = 116/625 (18%), Positives = 215/625 (34%), Gaps = 95/625 (15%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P ++AR E+S L + +S+ DD Y++ ++ D YD ++ + F DLA Sbjct: 22 PCPDWPAQRARAEVSQLLKTLSHWDDHYHRQGVALVADELYDQSRQHLRHLQGCF-DLAS 80 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 ++ + + +V H +P ++K+ + +++++ W Sbjct: 81 ND----------APLATARGQVPHPVPHTGVDKLRDEPAVQRWLQGRQGMW--------- 121 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 ++PK+DG +++ Y++G+ RGDG G D S I + I V L P Sbjct: 122 --IQPKVDGVAVSLVYQQGQLTQLLSRGDGVLGHDWSRHIPQLGRI--VRQLPQPLDTVF 177 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247 +GE+Y D AN R +G+L R +D G+G Sbjct: 178 QGELYWRLAD--------HVQAEAGSANARGIVAGLLARKQLSDEQGS------GIGLFV 223 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + G +++ L ++ + + + Sbjct: 224 WDWPAGPGSQAERLAQLTALGFIDSQRFSVAIEGFDAAAHWRQHWYRTALPFATDGVILR 283 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + RA++P W+ + K+ QA ++ DI +IGRTG +TP+ +LEP+ + Sbjct: 284 QDARPPAQRWRAQAPYWIAAWKYPFSQALAQVRDIHFRIGRTGRITPLLQLEPIQLDDRR 343 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 I+ +L DIR GD+V V AG IP+V ++ Sbjct: 344 ISQVSL-----------GSLARWTQLDIRPGDQVAVSLAGLTIPRVESVVHR-------- 384 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGL 486 S + + C AC Q L RL ++ G+ Sbjct: 385 -----------SPLRAPVLVPDPADHHLLSCWQASPACQEQFLARLAWLGGNKGLDMAGV 433 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +S A TL + + + + G L + + R Sbjct: 434 GSGVWHQLVESGKVA----------TLSDWLELTREDLLEVPGIAQARAERLLQAFSLGR 483 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 ER++ LG+ ++ + A + + + P VG Sbjct: 484 RQPFERWLRGLGLPA---------PSHF-------SPGADWSALASRNIEQWLAEPGVGA 527 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE 631 + A + F + + L Sbjct: 528 VRAAQLQAFLSHEQVQALARRLRAH 552 >gi|32396672|gb|AAP49293.1| NAD-dependent DNA ligase [Geobacillus thermodenitrificans] gi|32396682|gb|AAP49297.1| NAD-dependent DNA ligase [Bacillus coagulans] Length = 107 Score = 170 bits (431), Expect = 6e-40, Method: Composition-based stats. Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 8/115 (6%) Query: 45 DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104 D+EYD L + AI +P+L S + P +IGG + KVTH +P +SL ++ Sbjct: 1 DAEYDRLMQELMAIEEQYPELKTS---DSPTQRIGGPPLEAFRKVTHVVPMMSLANAFDE 57 Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHS 159 DLR F R+ ++ + E KIDG +++RYE G FV A RGDG + Sbjct: 58 GDLRDFDRRVR-----QEVGEAAYVCELKIDGLAVSVRYEDGYFVQGATRGDGTT 107 >gi|32482045|gb|AAP49289.1| NAD-dependent DNA ligase [Bacillus sp. IMG-1] Length = 107 Score = 170 bits (431), Expect = 7e-40, Method: Composition-based stats. Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 8/115 (6%) Query: 45 DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104 D+EYD L + AI +P+L S + P +IGG + KV H +P +SL + Sbjct: 1 DAEYDRLMQELIAIEEQYPELKTS---DSPTQRIGGPPLEAFRKVAHPVPMMSLANAFGE 57 Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHS 159 DLR F R+ ++ + E KIDG +++RYE G FV A RGDG + Sbjct: 58 GDLRDFDRRVR-----QEVGEAAYVCELKIDGLAVSVRYEDGYFVQGATRGDGTT 107 >gi|58699501|ref|ZP_00374229.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila ananassae] gi|58533981|gb|EAL58252.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila ananassae] Length = 143 Score = 170 bits (431), Expect = 7e-40, Method: Composition-based stats. Identities = 53/146 (36%), Positives = 82/146 (56%), Gaps = 12/146 (8%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 L+ +I+YH+ Y+Q +KP I D+EYD LK++ I P++ +++ +G Sbjct: 9 EKLQDQINYHNVLYHQKNKPEISDAEYDELKKKLAEIE---PEIYATQES------VGAP 59 Query: 82 MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141 + KV H P LSLE ++ + + KF+++I RF + + I EPKIDG + Sbjct: 60 PDERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFLIE---DKIEILCEPKIDGLSFSA 116 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACI 167 YE G+FV AA RGDG GEDV+ + Sbjct: 117 IYEDGRFVKAATRGDGFVGEDVTHNV 142 >gi|123440450|ref|YP_001004444.1| NAD-dependent DNA ligase LigB [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166226365|sp|A1JHV9|LIGB_YERE8 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|122087411|emb|CAL10192.1| putative DNA ligase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 565 Score = 170 bits (430), Expect = 8e-40, Method: Composition-based stats. Identities = 106/632 (16%), Positives = 211/632 (33%), Gaps = 93/632 (14%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 S E+ E+ LE+++ + Y+Q I D YD L+ + Sbjct: 27 CPEWSEERMSGEMHLLEKQLDQWNIAYHQQGISPIADDIYDQLQDKLHRWR------LCL 80 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ N+ K+ H + L+K+ + L ++T W Sbjct: 81 GLPDKTDNR----PIPGNGKMLHPVAHTGLKKLKDEAALISWMTGRKNLW---------- 126 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PKIDG +T+ Y+ GK RG+G G++ + I IP+ ++ P ++ ++ Sbjct: 127 -VQPKIDGVAVTLVYQAGKLTQVLSRGNGLKGQNWADKAPFISAIPQYIASAPP-LLTLQ 184 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GEV++ AN R + +G L R + + + L F+ + Sbjct: 185 GEVFLQMEGHQQAQS--------GGANARASVAGALMRKSVSPLLAKLGIFIWAWPDGPK 236 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E + ++ +GFP+ + + + LP+ DG+V + + Sbjct: 237 SMV----EKSRLLQEMGFPLTAHYSE-PVISSSDVALWRDRWFKMPLPFVTDGVVIRQEN 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W ++ K+ Q T + DI +GRTG +T + ++ PV I I Sbjct: 292 VPAGRYWQATPG--NWSVAWKYPPPQQITEIKDIHFTVGRTGKITAILQVIPVKIDDKWI 349 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD+V + AG+ IP++ +I Sbjct: 350 RRVNI-----------GSIARWKQWDIVPGDQVTISLAGQGIPRLDKVIWRVSQ------ 392 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 +++ P C L + + ++ + Sbjct: 393 -------------RQEIVPPDADKFHQLTCFRRLPFECEPQFLSRLAWLSGTNGLDM--Q 437 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ I D +L Q I + G G +Y + R Sbjct: 438 SVGNGLWRELIHHGFINGLLDWLSLSVEQ------IAAVPGIGQGRAEKIYQQFQRARQQ 491 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +++ +LG + +++ + +W + P +G + Sbjct: 492 PFSQWLQALG---------------FPQGIPLDTSWHSLRQRSIAEWRLM---PGIGQVR 533 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 A+ I F +P + L ++ E Sbjct: 534 AKQINHFLHHPEVQMMADFLSQQGIAGFSPEE 565 >gi|330501400|ref|YP_004378269.1| NAD-dependent DNA ligase LigB [Pseudomonas mendocina NK-01] gi|328915686|gb|AEB56517.1| NAD-dependent DNA ligase LigB [Pseudomonas mendocina NK-01] Length = 564 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 123/634 (19%), Positives = 219/634 (34%), Gaps = 94/634 (14%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P + +A EL +L ++I+ DD Y+ ++ D YD + R A FP Sbjct: 19 PCPNWADARAAMELGALSRQIAEWDDAYHNQGHSLVADEIYDQARGRLQAWHQCFPTALD 78 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + + S K+ H + L K+ N + ++I W Sbjct: 79 NLPE---------PLAGSTGKLAHPVAQTGLRKL-NDAAVAEWIASRSDLW--------- 119 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 ++PK+DG +T+ Y G +A RGDG G+D +A R +P +P L + + + Sbjct: 120 --IQPKVDGVAVTLVYRHGVLQHAVSRGDGRHGQDWTARARQLPGVPTRLPEPLDAV--L 175 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247 +GE+Y N + + + A + A + L+ + F Sbjct: 176 QGELYWRLN------EHVQSRDGGAGARGKVAGLMARQTLDQHEADAIGLF-----VWDW 224 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + E LQ + LGF + QA S + P+ DG+V + Sbjct: 225 PDGPEQMPERLQALHRLGFSDSLQYTQALRSPDQASL-WRQRWFDQPQPFASDGVVLRQG 283 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +A +P W I+ K+ QA + + IGRTG +TP+ L+PV++ Sbjct: 284 TR--PSGERWQAEAPHWAIAWKYPASQALAVVQAVHFSIGRTGRITPILHLQPVDLDERR 341 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 I+ L DIR GD+V ++ AG IP++ +I Sbjct: 342 ISRVAL-----------GSLQSWEKLDIRPGDQVSIRLAGLTIPRLDQVIWR-------- 382 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGL 486 S ++ A C C Q L RL + N+ GL Sbjct: 383 -----------SPERAVVHAPDPDQYHALSCWRLSAECRQQFLARLNWLAGKQGLNLNGL 431 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G SE + + + +++ + G G + L S + + Sbjct: 432 GPGTWSTLLASEQLDGLL----------DWLEFDSQRLQQLPGIGPRRASQLQQSFAQAQ 481 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 SL++++ +LG ++ + ++ P + Sbjct: 482 QRSLQQWLQALGAPP----------------DLKLGAEDDWATLLTRNRAEWMQQPGMSQ 525 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 A+ ++ F+ +P E L + E Sbjct: 526 KSAERLLAFFSHPEVQRLGERLQRAGIAGFQPRE 559 >gi|227327138|ref|ZP_03831162.1| NAD-dependent DNA ligase LigB [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 563 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 120/618 (19%), Positives = 225/618 (36%), Gaps = 98/618 (15%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI----AHAFPDLARSEDPNGP 74 KE+ +L ++ DD YY K I D YD L+ + + P P+ Sbjct: 37 KEIDALRHQLEQWDDVYYTEGKSPIEDDVYDQLREQLNQWLGCFQPQNP--IPVRLPDN- 93 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 K +H + L+K+ + L ++I + W ++PK+ Sbjct: 94 ------------GKQSHPVAHTGLKKLSDRRQLMQWIAQREDLW-----------IQPKV 130 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +T+ Y+ GK V A RG+G GED + +R IP IP +L+ + ++GE+++ Sbjct: 131 DGVAVTLVYQHGKLVSAVSRGNGLQGEDWTEKVRLIPGIPHLLTDAPSSL-VLQGELFL- 188 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 N + G N R+ +G +RR P+ + + FV + Sbjct: 189 ----KMTNHQQRTQGG---VNARSVVAGEMRRHQPSPVLSQIALFVWEWPDGPKTMP--- 238 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L+K++ +GF + A + LP+ DG+V + + + Sbjct: 239 -ERLEKLKEMGFAMTADYTHAIGSFA-DAEKWRHDWYHGPLPFVTDGVVIRQTKEPQGRY 296 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 + W I+ K+ + D+ +GRTG + V +L P+ + ++ + Sbjct: 297 WRNTSAD--WAIAWKYPPVNQVAEVADVAFSVGRTGKIAVVLKLNPLKLDDKSVSRVNV- 353 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 D+ GDRV V AG+ IP++ +++ Sbjct: 354 ----------GSLSRWKQWDVLPGDRVSVSLAGQGIPRLDNVVW---------------- 387 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 + + P A C Q L RL + G+ + Sbjct: 388 --RGTERPAIVFPSEHDFHAFSCFRYSAVCQQQFLARLVWLSGDHGLKLAGVREGMWLRL 445 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + + + +L Q + + G GD ++YDS+ R + L R++ Sbjct: 446 IQHD----LLEDVLSWLSLTEAQLNA------VNGMGDKRARDIYDSLQSARQMPLSRWL 495 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGI + I+ + + +A + +G+ A+ I+ Sbjct: 496 FALGIPVPRSAISAL-------------DDVDWLALQQWTAQQWRQFSGIGERRAEEIMA 542 Query: 615 FYQNPRNICAVEALLKEV 632 F ++P + + L +E Sbjct: 543 FLKHPIVVELITRLDREG 560 >gi|170719684|ref|YP_001747372.1| NAD-dependent DNA ligase LigB [Pseudomonas putida W619] gi|257096560|sp|B1J2Z7|LIGB_PSEPW RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|169757687|gb|ACA71003.1| DNA ligase (NAD(+)) [Pseudomonas putida W619] Length = 567 Score = 168 bits (425), Expect = 3e-39, Method: Composition-based stats. Identities = 118/617 (19%), Positives = 212/617 (34%), Gaps = 94/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 S +QAR E++ L ++ DD Y++ ++ D YD + + F Sbjct: 23 CPDWSTKQARTEVAQLRATLANWDDHYHRQGIALVADELYDQARHHLLHLQQCFGQEFTD 82 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P + + + H + +EK+ + + +++T W Sbjct: 83 PSP----------LASARGPIAHPVAHTGVEKLHDAAAVARWMTGKKGVW---------- 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +++ Y +G+ V RGDG G D S I+ + +I L P + ++ Sbjct: 123 -VQPKVDGVAVSLVYRQGRLVQLLSRGDGLQGHDWSRHIKDLDSI--TRQLPQPLDVVLQ 179 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+Y+ +N R +G+L R + + Sbjct: 180 GELYLRLQA--------HVQAEAGSSNVRGTVAGMLAR---KQLGPEPGASIGLFVWDWP 228 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q E L ++ GFP + A + + + RS LP+ DG++ + D Sbjct: 229 HGPDNQGERLTQLAAWGFPDSQRFSTAIDTPEE-ATHWRLHWYRSPLPFATDGVILRQDS 287 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + +P W+ + K+ QA + ++ IGRTG +TP+ RL+PV + I Sbjct: 288 R--PPADRWQPNAPYWIAAWKYPFAQALAEVREVRFLIGRTGKVTPLLRLKPVTLDDRRI 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + +L DIR GD+V + AG IP+ ++ P Sbjct: 346 SQVSL-----------GSLARWRALDIRPGDQVAISLAGLTIPRFDQVVHRAVERQVLPV 394 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLG 487 + H C C Q + RL + + G G Sbjct: 395 -------------------PEAEQYGQHSCWQASDGCQEQFIARLVWLSGKQGLAMPGTG 435 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 K + A + D TL +Q S + G + T L S + RN Sbjct: 436 KGTWKRLVQ----AGLVTSLTDWLTLDAQQLLS------VPGISRKTATQLQRSFDIGRN 485 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 ++ LG+ + + + DW +L P +G Sbjct: 486 RPFAQWRKGLGVPAPAQVPR-------------DENWQTLAGRSASDWQTL---PGIGAT 529 Query: 608 IAQAIVEFYQNPRNICA 624 A + F+ + + Sbjct: 530 RATQLANFFTHEQVQRI 546 >gi|332159673|ref|YP_004296250.1| NAD-dependent DNA ligase LigB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325663903|gb|ADZ40547.1| NAD-dependent DNA ligase LigB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 565 Score = 168 bits (425), Expect = 3e-39, Method: Composition-based stats. Identities = 104/632 (16%), Positives = 209/632 (33%), Gaps = 93/632 (14%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + E+ E+ LE+++ + Y+Q I D YD L+ + Sbjct: 27 CPEWTEERMSGEMHILEKQLDQWNIAYHQQGISPIADDIYDQLQDKLHRWR------LCL 80 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ + K+ H + L+K+ + L ++T W Sbjct: 81 GLPDKTDIR----PIPGNGKMLHPVAHTGLKKLKDEAALISWMTGRKDLW---------- 126 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PKIDG +T+ Y+ GK RG+G G++ + I IP+ ++ P ++ ++ Sbjct: 127 -VQPKIDGVAVTLVYQAGKLTQVLSRGNGLKGQNWADKAPFISAIPQYIASAPP-LLTLQ 184 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GEV++ AN R + +G L R + + + L F+ + Sbjct: 185 GEVFLQMEGHQQAQS--------GGANARASVAGALMRKSVSPLLAKLGIFIWAWPDGPK 236 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E + ++ +GFP+ + + + LP+ DG+V + + Sbjct: 237 SMV----EKSRLLQEMGFPLTAHYSE-PVISSSDVAQWRDRWFKMPLPFVTDGVVIRQEN 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W ++ K+ Q T + DI +GRTG +T + ++ PV I I Sbjct: 292 VPAGRYWQATPG--NWSVAWKYPPPQQITEIKDIHFTVGRTGKITAILQVVPVKIDDKWI 349 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD+V + AG+ IP++ +I Sbjct: 350 RRVNI-----------GSIARWRLWDIVPGDQVTISLAGQGIPRLDKVIWRVSQ------ 392 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 +++ P C L + + ++ + Sbjct: 393 -------------RQEIVPPDADKFHQLTCFRRLPFECEPQFLSRLAWLSGTNGLDM--Q 437 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ I D +L Q I + G G +Y + R Sbjct: 438 SVGNGLWRELIHHGFINGLLDWLSLSVEQ------IAAVPGIGQGRAEKIYQQFQRARQQ 491 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +++ +LG + +++ +W + P +G + Sbjct: 492 PFSQWLQALG---------------FPQGIPLDSSWHSLRQRGIAEWRLM---PGIGQVR 533 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 A+ I F +P + L ++ E Sbjct: 534 AKQINHFLHHPEVQMMADFLSQQGIAGFSPEE 565 >gi|311277433|ref|YP_003939664.1| DNA ligase (NAD(+)) [Enterobacter cloacae SCF1] gi|308746628|gb|ADO46380.1| DNA ligase (NAD(+)) [Enterobacter cloacae SCF1] Length = 556 Score = 168 bits (425), Expect = 3e-39, Method: Composition-based stats. Identities = 124/623 (19%), Positives = 221/623 (35%), Gaps = 94/623 (15%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E+++L +++ + Y++ + D YD L R F +E+ Sbjct: 25 PAKAEQEMAALNAQLTRWSEAYWREGASAVSDEVYDQLSARLKQWQRCFSQERTAEEAPA 84 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 IGG V H + + K+ + L +++ R + ++PK Sbjct: 85 ----IGGA-------VKHPVAHTGVRKMASKAALEQWM-RTRQGL----------WVQPK 122 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y +G+ V A RGDG GED +A R I IP+ ++GE++ Sbjct: 123 VDGVAVTLVYRQGRLVRAISRGDGLKGEDWTAKARVIAAIPQQTQGP-LANSVLQGEIFW 181 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 N +G N R A+G + R + D +L F+ + + Sbjct: 182 R-----QDNHIQQRMGGM---NARAKAAGAMMRQSDGDALAHLGLFIWEWPDGPQTMPER 233 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 + L V + + + LP+ DG++ + + + Sbjct: 234 LAALAAAGFRLTADWTLPVNTIGDVEQRRAAWF-----SAPLPFATDGIIIRAAQEPAGE 288 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 + W+++ K+A ++ I +GRTG + +A LEPV + + +L Sbjct: 289 RWLPGEGG--WVVAWKYAPASQVAQVKTIRFAVGRTGKVAVIAALEPVVLDDKRVQRVSL 346 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP+V Sbjct: 347 -----------GSVARWRALDIAPGDQILVSLAGQGIPRVDG------------------ 377 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 + V R A C C AQ + RL SR A +IEG+G Sbjct: 378 --VVWRGVDRQKPSPPVPRYNALTCLYASPECMAQFIARLVWLSSRQALDIEGVGNAGWQ 435 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 +++ L Q + +++ G L+ N R R Sbjct: 436 ILYQA----------HHFEHLFSWLQLTPAQLQATPGLSPARGLTLWHRFNLAREQPFIR 485 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +I ++G A A S+Q Q + DW +L P +G+ A+ I Sbjct: 486 WIVAMGA---PLAQAALKAAGDRSWQAMRQ-------RSEADWRTL---PGMGEEKARQI 532 Query: 613 VEFYQNPRNICAVEALLKEVSPS 635 V + +P+ + A+ L + Sbjct: 533 VSWLHHPQ-VEALAGWLAGLRIP 554 >gi|318603769|emb|CBY25267.1| DNA ligase, LigB [Yersinia enterocolitica subsp. palearctica Y11] Length = 565 Score = 168 bits (425), Expect = 3e-39, Method: Composition-based stats. Identities = 104/632 (16%), Positives = 209/632 (33%), Gaps = 93/632 (14%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + E+ E+ LE+++ + Y+Q I D YD L+ + Sbjct: 27 CPEWTEERMSGEMHLLEKQLDQWNIAYHQQGISPIADDIYDQLQDKLHRWR------LCL 80 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ + K+ H + L+K+ + L ++T W Sbjct: 81 GLPDKTDIR----PIPGNGKMLHPVAHTGLKKLKDEAALISWMTGRKDLW---------- 126 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PKIDG +T+ Y+ GK RG+G G++ + I IP+ ++ P ++ ++ Sbjct: 127 -VQPKIDGVAVTLVYQAGKLTQVLSRGNGLKGQNWADKAPFISAIPQYIASAPP-LLTLQ 184 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GEV++ AN R + +G L R + + + L F+ + Sbjct: 185 GEVFLQMEGHQQAQS--------GGANARASVAGALMRKSVSPLLAKLGIFIWAWPDGPK 236 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E + ++ +GFP+ + + + LP+ DG+V + + Sbjct: 237 SMV----EKSRLLQEMGFPLTAHYSE-PVISSSDVAQWRDRWFKMPLPFVTDGVVIRQEN 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W ++ K+ Q T + DI +GRTG +T + ++ PV I I Sbjct: 292 VPAGRYWQATPG--NWSVAWKYPPPQQITEIKDIHFTVGRTGKITAILQVVPVKIDDKWI 349 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD+V + AG+ IP++ +I Sbjct: 350 RRVNI-----------GSIARWRLWDIVPGDQVTISLAGQGIPRLDKVIWRVSQ------ 392 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 +++ P C L + + ++ + Sbjct: 393 -------------RQEIVPPDADKFHQLTCFRRLPFECEPQFLSRLAWLSGTNGLDM--Q 437 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ I D +L Q I + G G +Y + R Sbjct: 438 SVGNGLWRELIHHGFINGLLDWLSLSVEQ------IAAVPGIGQGRAEKIYQQFQRARQQ 491 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +++ +LG + +++ +W + P +G + Sbjct: 492 PFSQWLQALG---------------FPQGIPLDSSWHSLRQRGIAEWRLM---PGIGQVR 533 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 A+ I F +P + L ++ E Sbjct: 534 AKQINHFLHHPEVQMMADFLSQQGIAGFSPEE 565 >gi|32307199|gb|AAP79092.1| NAD-dependent DNA ligase [Bacillus catenulatus] Length = 107 Score = 168 bits (425), Expect = 3e-39, Method: Composition-based stats. Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 8/115 (6%) Query: 45 DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104 D+EYD L + AI +P+L S + P +IGG + KVTH +P +SL + Sbjct: 1 DAEYDLLMQELIAIEEQYPELKTS---DSPTQRIGGPPLEAFRKVTHRVPMMSLANAFGE 57 Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHS 159 DLR F R+ ++ + E KIDG +++RYE G FV A RGDG + Sbjct: 58 GDLRDFDRRVR-----QEVGEAAYVCELKIDGLAVSVRYEDGYFVQGATRGDGTT 107 >gi|330980117|gb|EGH78327.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 561 Score = 167 bits (423), Expect = 6e-39, Method: Composition-based stats. Identities = 114/608 (18%), Positives = 208/608 (34%), Gaps = 96/608 (15%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +A E+++L+Q+I+ DD Y++ I D YD +++ LA S + P Sbjct: 31 AKAHSEVTALQQQIAAWDDSYHRQGISQIPDELYDQARQKLSLWRSC---LAVSSPESNP 87 Query: 75 LNK-IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 L +G H +P + K+ + ++ ++ W ++PK Sbjct: 88 LKTAVGPLP--------HPVPHTGVNKLADEGSVKDWLKGRNDLW-----------IQPK 128 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ YEKG+ V A RGDG G+D ++ R I TIP+ L + ++GE+Y Sbjct: 129 VDGVAVTLVYEKGQLVQAISRGDGRKGQDWTSQARLIETIPQQLPQAESPV--LQGELYW 186 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 +D N R+ +G+L +G + G Sbjct: 187 RLDD--------HIQSASGSVNARSKVAGLLA------RQTISPQQADAIGLFVWDWPNG 232 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +M Q++ L + + P + + Sbjct: 233 PADMAQRLAGLQAMGFEDSAAYTHPLQNYAQAARWREHWYRNPLPFATDGVIMRQGQRPP 292 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +A +P W+ + K QA + ++ +IGR+G +TPV L PV + ++ + Sbjct: 293 AQRWQASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVRLDDRTVSRIS- 351 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DIR GD+V V AG IP++ ++ Sbjct: 352 ----------TGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVVSRAAERADMII----- 396 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 C C +Q RL + + G+G + Sbjct: 397 --------------PRADDFHELSCWQATPGCESQFRARLAWLSGKKGLALPGVGPGTWN 442 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++ + D TL + + I GF + S L DS+ R + Sbjct: 443 TLIENGQIIGLL----DWMTLNHAELVN------IPGFAERSSAKLLDSLQTARERPFQT 492 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 ++ ++G+ G A+ +N + P +G A + Sbjct: 493 WLKAIGLPPTGG----------------ARLPDNWHELADRSVEQWQAEPGIGPGRAARL 536 Query: 613 VEFYQNPR 620 F+Q+P+ Sbjct: 537 RAFFQDPQ 544 >gi|298489227|ref|ZP_07007245.1| DNA ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156246|gb|EFH97348.1| DNA ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 561 Score = 167 bits (422), Expect = 6e-39, Method: Composition-based stats. Identities = 114/623 (18%), Positives = 207/623 (33%), Gaps = 102/623 (16%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PDLARSED 70 +AR E+++L+Q+++ DD Y++ I D YD +++ + F P+ + Sbjct: 31 AKARSEVTNLQQQMAAWDDSYHRQGISHIPDELYDQARQKLNLWRSCFAVSTPEADPLKT 90 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 GPL H + + K+ + ++ ++ W + Sbjct: 91 AVGPL--------------PHPVAHTGVNKLADESSVKDWLKGRNDLW-----------I 125 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ YEKG+ V A RGDG G+D ++ R I IP L+ + + ++GE Sbjct: 126 QPKVDGVAVTLVYEKGQLVQAISRGDGRKGQDWTSQARLIKAIP--QHLSHHDSLILQGE 183 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +Y D + N R+ +G+L +G + Sbjct: 184 LYWRLTDHIQATS--------GSVNARSKVAGMLA------RQTISPQQADAIGLFVWDW 229 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 G +M Q++ L G + P + + Sbjct: 230 PNGPTDMAQRLAGLQAMGFEGSEAYTHSLENHVQAARWREHWYRNPLPFATDGVIMRQGQ 289 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +A +P W+ + K QA + + IGR+G +TPV L PV + ++ Sbjct: 290 RPPMQRWQASAPYWIAAWKHPYAQALAEVRKVSFNIGRSGRITPVLELTPVRLDDRTVSR 349 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 + DIR GD+V V AG IP++ +I Sbjct: 350 IS-----------TGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVISRAAE-------- 390 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 ++ C C +Q RL + + G+G Sbjct: 391 -----------RVEMITPQADDFHELSCWQATPGCESQFRARLIWLSGKKGLALPGVGPG 439 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 D ++ I +L + T++ NI GF + S L S+ R Sbjct: 440 TWDKLIENG----------QIESLLDWMTLNHTELANIPGFAERSSAKLLASLQTARERP 489 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 + ++ ++G+ G+ +N P +G A Sbjct: 490 FQTWLKAIGLPPTGSAT----------------LPDNWQELAGRSVEQWQAEPGIGSGRA 533 Query: 610 QAIVEFYQNPRNICAVEALLKEV 632 + F+Q P L + Sbjct: 534 AKLRSFFQAPEVQALSYQLQAQG 556 >gi|227113300|ref|ZP_03826956.1| NAD-dependent DNA ligase LigB [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 563 Score = 166 bits (421), Expect = 9e-39, Method: Composition-based stats. Identities = 123/616 (19%), Positives = 227/616 (36%), Gaps = 94/616 (15%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF--PDLARSEDPNGPLN 76 KE+ +L ++ DD YY K I D YD L+ + + F + + P+ Sbjct: 37 KEIDALRHQLELWDDVYYTEGKSPIEDDVYDQLRDQLNQWLGCFQPKNAIPARLPDN--- 93 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 K H + L+K+ + L ++I W ++PK+DG Sbjct: 94 ----------GKQLHPVAHTGLKKLSDRRQLVQWIAPREDLW-----------IQPKVDG 132 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 +T+ Y+ GK V A RG+G GED + +R IP IP +L+ + ++GE+++ Sbjct: 133 VAVTLVYQHGKLVSAVSRGNGLQGEDWTEKVRLIPGIPHLLTDAPSSL-VLQGELFLKMT 191 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 D + N R+ +G +RR P+ + + FV + E Sbjct: 192 DHRQRI--------QGSVNARSVVAGEMRRHQPSPVLSQIGLFVWEWPDGPKTMP----E 239 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+K++ +GF + A + S LP+ DG+V + + + Sbjct: 240 RLEKLKEMGFAMTADYTHAIGSFA-DAEKWRHHWYHSPLPFVTDGVVIRQTKEPQGRYWR 298 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 W I+ K+ ++D+ +GRTG + V +L P+ + + + Sbjct: 299 NTLAD--WAIAWKYPPVHQVAEVVDVAFSVGRTGKVAVVLKLNPLKLDDKSVRRVNV--- 353 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+ GDRV V AG+ IP++ +++ Sbjct: 354 --------GSLSRWKQWDVLPGDRVSVSLAGQGIPRLDNVVWRS---------------- 389 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 + ++P A +AC Q L RL N+ G+ + + Sbjct: 390 --TERPAIVSPNEHDFHAFSCFRYSVACQQQFLARLVWLSGEHGLNLAGVREGMWQRLIQ 447 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + + +L Q + + G GD ++Y S+ RN+ L R++ + Sbjct: 448 HD----VLEDVLSWLSLTEAQLNA------VNGMGDKRARDIYTSLQSARNMPLSRWLLA 497 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI V + +L +A + P +G+ A+ I+ F Sbjct: 498 LGI-PVPRSASSALDNV------------GWLALQQWTAQQWRQFPGIGEGRAEEIMAFL 544 Query: 617 QNPRNICAVEALLKEV 632 ++P + + L +E Sbjct: 545 KHPIVVELIARLDREG 560 >gi|238750790|ref|ZP_04612288.1| DNA ligase B [Yersinia rohdei ATCC 43380] gi|238710934|gb|EEQ03154.1| DNA ligase B [Yersinia rohdei ATCC 43380] Length = 563 Score = 166 bits (421), Expect = 1e-38, Method: Composition-based stats. Identities = 106/637 (16%), Positives = 210/637 (32%), Gaps = 93/637 (14%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 R S ++A E++ L ++++ D Y+Q ++ D YD L+ + Sbjct: 20 RAKPVCPEWSEKRASDEINILVKQLNQLDVAYHQQGISLLDDDIYDQLQDKLHGWREC-- 77 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 L + N + K+ H + L+K+ + L +++ W Sbjct: 78 -LGLPDKANN-------TLIPGDGKLLHPVAHTGLKKLKDENALADWMSGREDLW----- 124 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 ++PK+DG +T+ Y+ G+ + RG+G G + + I IP+ P Sbjct: 125 ------VQPKVDGVAVTLVYQAGELIQLLSRGNGLKGLNWTDKAPFISAIPQH-ISMAPP 177 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243 + ++GE+ FL ++ A A + + + ++P + Sbjct: 178 WLTLQGEL------FLQMDGHQQVQSGGVNARASVAGALMRKTMSPLLANLGVFI----- 226 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 K E ++ +GFP+ + ++ LP+ DG+V Sbjct: 227 -WAWPDGPKNLVEKTTLLQEMGFPLAAKYSK-PVTSSQDVMQWRDFWYQTPLPFVTDGVV 284 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 + +E + + W ++ K+ Q +T + DI IGRTG +T V ++ PV I Sbjct: 285 IRQEEEPAGRYWRAASG--NWSVAWKYPPLQKTTEIQDIHFTIGRTGKITVVLQVAPVKI 342 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 I + + +I VGD+V + AG+ IP++ +++ Sbjct: 343 DDKQIRRVNI-----------GSLALWRQWNIAVGDQVTITLAGQGIPRLENVVWRVSQR 391 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + K + L C Q L RL ++ Sbjct: 392 E-----------------YLIPPEKDKFHPLSCFRLLPLECEPQFLSRLAWLSGPKGLDM 434 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +G+ F++ I +L Q + + G G V +Y Sbjct: 435 RNVGRG----FWREIVRHGLINDMVGWLSLTAEQIAT------VPGIGRVRAEKIYQQFQ 484 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 R +++ +LG G + + Sbjct: 485 NTRLKPFSQWLPALGFPLGGVVDSH------------------WHPLQQRSIAEWRLISG 526 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 +G + A+ I F +P + L ++ E Sbjct: 527 IGAVRAKQINHFLSHPEVQEMADFLSQQGIAGFRPEE 563 >gi|330972946|gb|EGH73012.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aceris str. M302273PT] Length = 561 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 110/607 (18%), Positives = 204/607 (33%), Gaps = 94/607 (15%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +AR E ++L+Q+I+ DD Y++ I D YD +++ + F DP Sbjct: 31 AKARSEATALQQQIAEWDDSYHRQGISQIADELYDQARQKLNLWRSCFAVSIPESDP--- 87 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 + ++ + H +P + K+ + ++ ++ W ++PK+ Sbjct: 88 -------LKTAVGPLPHPVPHTGVNKLADEGSVKDWLKGRNDLW-----------IQPKV 129 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +T+ YEKG+ V A RGDG G+D ++ R I I L E ++GE+Y Sbjct: 130 DGVAVTLVYEKGRLVQAISRGDGRKGQDWTSQARLIKAIA--QQLPQAESTILQGELYWR 187 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 +D + N R+ +G+L +G + G Sbjct: 188 LDDHIQAAS--------GSVNARSKVAGLLA------RQTISPQQADAIGLFVWDWPNGP 233 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +M Q++ L + + P + + Sbjct: 234 ADMAQRLAGLQAMGFEDSAAYTHPLENYAQAARWREHWYRNPLPFATDGVIMRQGQRPPA 293 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 +A +P W+ + K QA + ++ +IGR+G +TPV L PV + ++ + Sbjct: 294 QRWQASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVRLDDRTVSRIS-- 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 DIR GD++ V AG IP++ ++ Sbjct: 352 ---------TGSLQRWQTLDIRPGDQIAVSLAGLTIPRLDGVVSRTAERADMII------ 396 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 C C +Q RL + + G+G + Sbjct: 397 -------------PRADDFHELSCWQATPGCESQFRARLAWLSGKKGLALPGVGPGTWNT 443 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + + D TL + + I GF + S L DS+ R + + Sbjct: 444 LIDNGQIMGLL----DWMTLNHAELVN------IPGFAERSSAKLLDSLQTARERPFQTW 493 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + ++G+ G A+ +N P +G A + Sbjct: 494 LKAIGLPPTGG----------------ARLPDNWHELAGRSVEQWQAEPGIGPGRAARLR 537 Query: 614 EFYQNPR 620 F+Q+P+ Sbjct: 538 AFFQDPQ 544 >gi|238759846|ref|ZP_04621002.1| DNA ligase B [Yersinia aldovae ATCC 35236] gi|238701907|gb|EEP94468.1| DNA ligase B [Yersinia aldovae ATCC 35236] Length = 532 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 106/615 (17%), Positives = 204/615 (33%), Gaps = 98/615 (15%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF-PDLARSEDPNGPLNKI 78 E+ L +++ D Y+Q I D YD L + P + Sbjct: 4 EIKELTKQLGKWDIAYHQQGHSPIADDAYDQLVAKLHQWQLCHLPHGKQENK-------- 55 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 + L + +H + L+K+ + L ++ W ++PK+DG Sbjct: 56 --QPILGNGQFSHPVAHTGLKKLKDEATLVSWMKGRKNLW-----------VQPKVDGVA 102 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 +++ Y G+ RG+G G++ + I IP+ + P ++ ++GE+++ Sbjct: 103 VSLVYVNGELTQLISRGNGLKGQNWTDKATFISAIPQFIVAAPP-LLTLQGELFLKMEGH 161 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 N R + +G L R +P+ + L L K E Sbjct: 162 QQAQS--------GGVNARASVAGALMRKSPSLLLPQLGI----LIWAWPDGPKSIVEKG 209 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + +R +GFP+ + + + +S LP+ DG+V + +E + Sbjct: 210 KLLRIMGFPLTAEYSK-SVTSSMDVTRWRQFWFKSPLPFVTDGIVIRQEEEPAGRYWQAT 268 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 W ++ K+ +Q T + +I IGRTG + V ++ P+ I + + Sbjct: 269 PGP--WSVAWKYPPQQQVTEVENIHFTIGRTGRSSVVLQVSPIKIDDKWVRRVNV----- 321 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 RDI +GD+V + AG+ IP++ ++I D+ Sbjct: 322 ------GTIARWKQRDITLGDQVTIALAGQGIPRLENVIWRATQRDSVV----------- 364 Query: 439 SRVVRDLNPKTGKLVAAHRC--TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 P + C AC AQ L RL +I+ + + Sbjct: 365 --------PPDWHQLHQWSCFRPLPQACEAQFLSRLIWLSGPQGLDIKNVSGGLWQPLIQ 416 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + +L Q + G G +Y + R ++ + Sbjct: 417 Q----GLVNDLVGWLSLTTEQIAG------VPGIGHKRAEKIYQQFQQTRQKPFSDWLQA 466 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LG G + ++ + +W S+ +G A+ I F Sbjct: 467 LGFPLKGLNETQ---------------WQILLERSMAEWTSMA---GIGQARAKQIKHFL 508 Query: 617 QNPRNICAVEALLKE 631 + L K+ Sbjct: 509 HHHEVQVMSNFLSKQ 523 >gi|188576356|ref|YP_001913285.1| DNA ligase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520808|gb|ACD58753.1| DNA ligase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 590 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + L I V A +A + S + V +A+ Sbjct: 424 ANLLEDLEIPKVTPIRAAQIATAFGSIDALRNGGPEPLVEA-----------GVPQSVAE 472 Query: 611 AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 ++ + P N + L + + + + ++ + +V TGTL + R A+ Sbjct: 473 SLATWLLVPANDTLAVKAQKKLSALLAMMPEAGEEKTGPLDGQTVVITGTLAALTRDAAK 532 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + + LGA V+ +S+KT ++ G+ GSKL+KAQ LGV+I +E + L L ++ Sbjct: 533 QRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLGEHG 587 Score = 137 bits (345), Expect = 7e-30, Method: Composition-based stats. Identities = 128/421 (30%), Positives = 201/421 (47%), Gaps = 72/421 (17%) Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 ++R GFPV++ V G+++YY + R LP+DIDG+VYK+D+ + Q+++G + Sbjct: 4 QLRAWGFPVSSLVEVVQGSDGLLAYYQRIGEARDGLPFDIDGVVYKLDDLAGQREMGFVS 63 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 R+PRW ++HKF ++ ST + I+IQIGRTG TPVARL+PV++ G ++TNATLHN D I Sbjct: 64 RAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNADQI 123 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439 L D+RVGD V+V+RAG+VIP+V ++ ++RHP QP+ P+ CP+C S Sbjct: 124 ARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRHPATQPWQMPTQCPVCGS 172 Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 +VR+ A RC+G L C AQ+ E +HFVSR A +++GLG++ ++ S Sbjct: 173 EIVREEG------QAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDS-- 224 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559 ++ AD++ L Q I + LE + +G+ Sbjct: 225 --GVVQGVADLYLLTVDQLLQLRMISTAESPHAFLREAREHLASGAYAQ-LEATLVGIGV 281 Query: 560 RHVGAE------IARSLAKYYLSYQ------------NFAQEINNIIAHNND-------- 593 G A L ++ N + I + Sbjct: 282 DLAGEREVPQTWQADLLRAGLPTFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGI 341 Query: 594 ------------------------DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629 W RVP +G +A+++ F+ P N A++ LL Sbjct: 342 EHVGESTAKALSAWFGDLDLIRHLPWPLFKRVPDIGGEVARSLGHFFDQPGNQKAIDHLL 401 Query: 630 K 630 Sbjct: 402 A 402 >gi|302186902|ref|ZP_07263575.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. syringae 642] Length = 561 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 110/607 (18%), Positives = 209/607 (34%), Gaps = 94/607 (15%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +AR E+++L+Q+I+ DD Y++ I D YD +++ F P Sbjct: 31 AKARSEVTTLQQQIAAWDDSYHRQGISQIPDELYDQARQKLSLWRSCF----AVSTPES- 85 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 + ++ + H +P + K+ + ++ ++ W ++PK+ Sbjct: 86 -----NPLKTAVGPLHHPVPHTGVNKLADEGSVKDWLKGRNDLW-----------IQPKV 129 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +T+ YEKG+ V RGDG +G+D ++ R I IP+ L I ++GE+Y Sbjct: 130 DGVAVTLVYEKGQLVQVISRGDGRNGQDWTSQARLIKAIPQQLPQAESPI--LQGELYWR 187 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 +D + N R+ +G+L +G + G Sbjct: 188 LDDHIQAAS--------GSVNARSKVAGLLA------RQTISPQQADAIGLFVWDWPNGP 233 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +M Q++ L + + P + + Sbjct: 234 ADMTQRLAGLQTMGFEDSAAYTHSLENYAQAARWREHWYRNPLPFATDGVIMRQGQRPPA 293 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 +A +P W+ + K QA + ++ +IGR+G +TPV L PV + ++ + Sbjct: 294 QRWQASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVRLDDRTVSRIS-- 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 DIR GD++ V AG IP++ ++ Sbjct: 352 ---------TGSLQRWQTLDIRPGDQIAVSLAGLTIPRLDGVVSRAAERADMII------ 396 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 C C +Q RL F + + G+G + Sbjct: 397 -------------PRAADFHELSCWQATPGCESQFRARLAWFSGKKGLALPGIGPGTWNT 443 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ + D TL + + I GF + S L DS++ R + + Sbjct: 444 LIENGQIMGLL----DWMTLNHAELVN------IPGFAERSSAKLLDSLHSARERPFQTW 493 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + ++G+ G A+ +N + P +G A + Sbjct: 494 LKAIGLPPTGD----------------ARLPDNWHELADRSVEQWQAEPGIGPGRAARLR 537 Query: 614 EFYQNPR 620 F+Q+P+ Sbjct: 538 AFFQDPQ 544 >gi|23011876|ref|ZP_00052108.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Magnetospirillum magnetotacticum MS-1] Length = 114 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 40/111 (36%), Positives = 71/111 (63%), Gaps = 1/111 (0%) Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++++F+ P N AV ALL++V+ + ++ K +VFTGTL+K+ R +A+ Sbjct: 4 DSLIQFFSEPHNDAAVRALLEQVNTEP-LASTHSAAAFAGKTVVFTGTLEKMTRSEAKAT 62 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +LGA VS +S KTD+++ G GSKL+ A++ GVK+++E+ +L +L + Sbjct: 63 AERLGAKVSGSVSAKTDLVVAGPGAGSKLKDAERHGVKVVSEDAWLEMLAE 113 >gi|32396687|gb|AAP49299.1| NAD-dependent DNA ligase [Bacillus circulans] Length = 108 Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats. Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 7/114 (6%) Query: 45 DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104 D+EYD + A+ +P+ + P ++GG+ + KV H IP LSL ++ Sbjct: 1 DAEYDLFMQELIALEEQYPEFK---TKDSPSQRVGGQPLDAFQKVEHRIPMLSLANAFHE 57 Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158 DLR F R+ ++ + + + E KIDG +++RYE G FV A RGDG Sbjct: 58 GDLRDFDRRVR----QEVGDDVAYVCELKIDGLAVSVRYENGYFVQGATRGDGT 107 >gi|330955026|gb|EGH55286.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae Cit 7] Length = 561 Score = 166 bits (419), Expect = 2e-38, Method: Composition-based stats. Identities = 111/617 (17%), Positives = 209/617 (33%), Gaps = 102/617 (16%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PD 64 S +AR E+++L+Q+++ DD Y++ I D YD +++ F P+ Sbjct: 25 CPDWSAAKARSEVTNLQQQMAAWDDSYHRQGISPIPDELYDQARQKLSLWRSCFAVSTPE 84 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 + GPL H + + K+ + ++ ++ W Sbjct: 85 ADPLKTAVGPL--------------PHPVAHTGVNKLADESSVKDWLKGRNDLW------ 124 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 ++PK+DG +T+ YE G+ V A RGDG G+D ++ R I IP+ L I Sbjct: 125 -----IQPKVDGVAVTLVYENGQLVQAISRGDGRKGQDWTSQARLIKAIPQQLPQADSAI 179 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244 ++GE+Y +D N R+ +G+L +G Sbjct: 180 --LQGELYWRLDD--------HIQSASGSVNARSKVAGLLA------RQTISPQQADAIG 223 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + G +M Q++ L + + + P Sbjct: 224 LFVWDWPNGPGDMAQRLAGLQAMGFEDSAAYSHPLENYAKAARWREHWYRNPLPFATDGV 283 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 + + +A +P W+ + K QA + ++ +IGR+G +TPV L PV + Sbjct: 284 IMRQGQRPPAQRWQASAPYWIAAWKHPYAQALAEVCKVNFKIGRSGRITPVLELTPVRLD 343 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 ++ + DIR G ++ V AG IP++ + R + Sbjct: 344 DRTVSRIS-----------TGSLQRWQTLDIRPGAQIAVSLAGLTIPRLDGV--VTRAAE 390 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNI 483 + C C +Q RL + + Sbjct: 391 RADIII-----------------PRAEDFHELSCWQATPGCESQFRARLAWLSGKKGLAL 433 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 G+G + ++ + D TL + ++ NI GF + S L +S+ Sbjct: 434 PGVGPGTWNTLIENGQIMGLL----DWMTL------NHAELANIPGFAERSSAKLLNSLQ 483 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 R + ++ ++G+ G A+ +N P Sbjct: 484 TARERPFQTWLKAIGLPPTGG----------------ARLPDNWHELAERSVEQWQAEPG 527 Query: 604 VGDIIAQAIVEFYQNPR 620 +G A + F+Q+P+ Sbjct: 528 IGPGRAARLRAFFQDPQ 544 >gi|146305490|ref|YP_001185955.1| NAD-dependent DNA ligase LigB [Pseudomonas mendocina ymp] gi|172046035|sp|A4XPF7|LIGB_PSEMY RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|145573691|gb|ABP83223.1| DNA ligase (NAD(+)) [Pseudomonas mendocina ymp] Length = 562 Score = 166 bits (419), Expect = 2e-38, Method: Composition-based stats. Identities = 131/631 (20%), Positives = 223/631 (35%), Gaps = 100/631 (15%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF-P 63 Q P +A+ E ++L Q+I+ DD Y+ + I D YD + R F P Sbjct: 18 QAEPCPDWPDSRAQVEFAALSQQIAQWDDAYHNQGRSPIADELYDQARERLQRWQQCFAP 77 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 +P + S + H +P L K+ N + ++I W Sbjct: 78 ARQPLPEP----------LTGSAGPIAHPVPQTGLRKL-NDAAIGEWIGSRDDLW----- 121 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 ++PK+DG +T+ Y +G+ A RGDG G+D SA R +P +P L + Sbjct: 122 ------IQPKVDGVAVTLVYRQGRLHQAISRGDGRHGQDWSARARQLPAVPTRLPEAL-- 173 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243 + ++GE+Y D L D A R +G++ R +D Sbjct: 174 DLVLQGELYWRLEDHLQARD--------GGAGARGKVAGMMARHELSDTDGAAIGLF--- 222 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 E L +++ LGF + + + R LP+ DG+V Sbjct: 223 VWDWPDGPASMDERLSQLQALGFADSQHYSKPIRSVEE-ARQWRQHWYRHRLPFASDGVV 281 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 + +A +P W ++ K+ QA + +D +IGR+G +TPV RL+PV++ Sbjct: 282 LRQGTR--PAGARWQAEAPHWAVAWKYPASQALAVVQAVDFRIGRSGRITPVLRLQPVDL 339 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 I+ L D+R GD+V ++ AG IP++ +I Sbjct: 340 DDRRISRVAL-----------GSVPTWKSLDVRPGDQVAIRLAGLTIPRLDSVIWR---- 384 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFN 482 S + A C +C Q RL S+ Sbjct: 385 ---------------SPHRAPVEVPRSADYHALSCWRSSPSCQHQFQARLAWLSSKQGLA 429 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 + G+G ++ D L + Q S + G G L + Sbjct: 430 LSGVGPGTWSSL--------PLQGLLDWLELDKAQLQS------LPGIGPRRAAQLQQAF 475 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + R+ L++++ +LG + ++I DDW +R P Sbjct: 476 AQARDRPLQQWLRALGAPPGFDAGG-------------LDDWPSLIERQRDDW---LRRP 519 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 VG A ++ F+ +P L + Sbjct: 520 GVGPKGADRLLAFFSHPEVQRLGRQLQQAGV 550 >gi|66048020|ref|YP_237861.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. syringae B728a] gi|81307820|sp|Q4ZLZ9|LIGB_PSEU2 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|63258727|gb|AAY39823.1| DNA ligase (NAD+) [Pseudomonas syringae pv. syringae B728a] Length = 561 Score = 166 bits (419), Expect = 2e-38, Method: Composition-based stats. Identities = 109/607 (17%), Positives = 203/607 (33%), Gaps = 94/607 (15%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +AR E+++L+Q+I+ DD Y++ I D YD +++ + F P Sbjct: 31 AKARSEVTALQQQIAEWDDSYHRQGISQIADELYDQARQKLNLWRSCF----AVSTPES- 85 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 + ++ + H +P + K+ + ++ ++ W ++PK+ Sbjct: 86 -----DPLKTAVGPLPHPVPHTGVNKLADEGSVKGWLKGRNDLW-----------IQPKV 129 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +T+ YEKG+ V A RGDG G+D ++ R I I L E ++GE+Y Sbjct: 130 DGVAVTLVYEKGRLVQAISRGDGRKGQDWTSQARLIKAIA--QQLPQAESTILQGELYWR 187 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 +D + N R+ +G+L +G + G Sbjct: 188 LDDHIQAAS--------GSVNARSKVAGLLA------RQTISPQQADAIGLFVWDWPNGP 233 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +M Q++ L + P + + Sbjct: 234 ADMAQRLAGLQAMGFEDSAAYTHPLENYVQAARWREHWYRNPLPFATDGVILRQGQRPPA 293 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 +A +P W+ + K QA + ++ +IGR+G +TPV L PV + ++ + Sbjct: 294 QRWQASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVRLDDRTVSRIS-- 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 DIR GD++ V AG IP++ ++ Sbjct: 352 ---------TGSLQRWQTLDIRPGDQIAVSLAGLTIPRLDGVVSRAAERADMII------ 396 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 C C +Q RL + + G+G + Sbjct: 397 -------------PRADDFHELSCWQATPGCESQFRARLAWLSGKKGLALPGVGPGTWNT 443 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + + D TL + + I GF + S L DS+ R + + Sbjct: 444 LIDNGQIMGLL----DWMTLNHAELVN------IPGFAERSSAKLLDSLQTARERPFQTW 493 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + ++G+ G A+ +N P +G A + Sbjct: 494 LKAIGLPPTGG----------------ARLPDNWHELAGRSVEQWQAEPGIGPGRAARLR 537 Query: 614 EFYQNPR 620 F+Q+P+ Sbjct: 538 AFFQDPQ 544 >gi|308188670|ref|YP_003932801.1| DNA ligase [Pantoea vagans C9-1] gi|308059180|gb|ADO11352.1| DNA ligase [Pantoea vagans C9-1] Length = 583 Score = 166 bits (419), Expect = 2e-38, Method: Composition-based stats. Identities = 115/624 (18%), Positives = 219/624 (35%), Gaps = 91/624 (14%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + +A +E+ L+Q++ + DD YY+ + + D++YDAL++R H F Sbjct: 29 TPNRATEEIRRLQQQLQHWDDAYYRQGQSPVADADYDALQQRLIQWQHCF---------- 78 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P H + ++K+ + L ++ W ++P Sbjct: 79 SPYQPAYAPQLPGNGTSLHPVAHTGVKKMRDKLALAYWMQGRRDLW-----------VQP 127 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG +++ Y +G+ V RGDG GE+ A IP IP + + ++GE++ Sbjct: 128 KVDGIAVSLVYRQGRLVSLLSRGDGLRGEEWLAKAAWIPAIPLN-IETRLDEVVLQGELF 186 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + D D N R +G + + L+ F+ + Sbjct: 187 LPMTDHQQAID--------GGKNARTQVAGAMMSKQRVPLLNSLDVFIWAWPDGPATMTE 238 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 ++ + + ++ V+ + + LP+ DG+V Sbjct: 239 RLEQLSRWGLGIAAKWSHSVK-----DEEEVAAWRDRWFHAALPFVTDGVVVHQSLRPAG 293 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 K + W ++ K+ + S +L +D +GRTG + V L+PV + + Sbjct: 294 KNWLPGEGT--WAVAWKYQPPEVSAEVLSVDFPVGRTGKIAAVLNLQPVQLDDKTVRRVN 351 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 + DI GD + + AG+ IP++ +I D Sbjct: 352 V-----------GSLRRWQESDIVAGDVITLSLAGQGIPRLERVIWRVAERDYPQ----- 395 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 P C T C Q L +L+ + NI G+ + Sbjct: 396 --------------PPDASHYTPLSCYTFSAECQKQLLAKLRWLSQKTVLNIPGVERSTW 441 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 ++ TL Q + T GF + L+ N R Sbjct: 442 LRLLETGSMTHL----FGWLTLTPEQIAAAT------GFSPERASQLWHRFNLTRQQPFR 491 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R++ +LGI + + +SL Q+ +++ + W +L P VG +A+ Sbjct: 492 RWVDALGI-SLPRKALKSLPD---------QQWESLMQRDVTGWQAL---PGVGAALAKR 538 Query: 612 IVEFYQNPRNICAVEALLKEVSPS 635 +V + + R + L ++ PS Sbjct: 539 LVAQFHDARVQALIAFLQQQGIPS 562 >gi|6561410|gb|AAF16907.1|AF173987_5 DNA ligase [Rhodothermus marinus DSM 4252] Length = 154 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 +EA+ ++A + L + ++ H YY P+I D++YD L + + FP+L Sbjct: 29 DLEAIDRKEAEALAARLREVLNQHAYRYYVLDNPLIPDADYDLLMQALRKLEARFPELV- 87 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++GG KV H P LSL + ED+R + R R ++ + Sbjct: 88 --TPDSPTQRVGGPPLGRFEKVRHPEPLLSLNNAFGEEDVRVWYERCCRMLAERLGQPVQ 145 Query: 128 --FTLEPKI 134 T E KI Sbjct: 146 PAVTAELKI 154 >gi|166711580|ref|ZP_02242787.1| NAD-dependent DNA ligase LigA [Xanthomonas oryzae pv. oryzicola BLS256] Length = 590 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + L I V A +A + S + V +A+ Sbjct: 424 ANLLEDLEIPKVTPIRAAQIAAAFGSIDALRNGGPEPLVEA-----------GVPQSVAE 472 Query: 611 AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 ++ + P N + L + + + + ++ + +V TGTL + R A+ Sbjct: 473 SLATWLLVPANDTLAVNAQKKLSALLAMMPEAGEEKTGPLDGQTVVITGTLAALTRDAAK 532 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + + LGA V+ +S+KT ++ G+ GSKL+KAQ LGV+I +E + L L ++ Sbjct: 533 QRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDETRLLAFLGEHG 587 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 122/420 (29%), Positives = 201/420 (47%), Gaps = 70/420 (16%) Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 ++R GFPV++ V G+++YY + R LP+DIDG+VYK+D+ + Q+++G + Sbjct: 4 QLRAWGFPVSSLVEVVQGSDGLLAYYQRIGEARDGLPFDIDGVVYKLDDLAGQREMGFVS 63 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 R+PRW ++HKF ++ ST + I+IQIGRTG TPVARL+PV++ G ++TNATLHN D I Sbjct: 64 RAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNADQI 123 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439 L D+RVGD V+V+RAG+VIP+V ++ ++R P QP+ P+ CP+C S Sbjct: 124 ARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRPPATQPWQMPTQCPVCGS 172 Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 +VR+ A RC+G L C AQ+ E +HFVSR A +++GLG++ ++ S Sbjct: 173 EIVREEG------QAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDS-- 224 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI----- 554 ++ AD++ L Q I + + + Sbjct: 225 --GVVQGVADLYLLTVDQLLQLRMISTVESPHAFLREAREHLASGAYAQLEATVVGIGVD 282 Query: 555 ----------------------FSLGIRHVGAEIARSLAKYYL----------------- 575 F + + + A +L + Sbjct: 283 LAGEREVSQTWQADLLRAGLPTFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIE 342 Query: 576 -----SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 + + + ++ + W RVP +G +A+++ F+ P N A++ LL Sbjct: 343 HVGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQPGNQKAIDHLLA 402 >gi|261884680|ref|ZP_06008719.1| NAD-dependent DNA ligase LigA [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 212 Score = 164 bits (416), Expect = 3e-38, Method: Composition-based stats. Identities = 65/237 (27%), Positives = 114/237 (48%), Gaps = 26/237 (10%) Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 NI+GLG ++ ++ I+ ADI+ L + GF ++NL Sbjct: 1 MNIDGLGDAIVELLYQKN----IIKDIADIYRLDE------LSFIGLEGFKTKKISNLLS 50 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 +IN + +L++FI SLGI H+G A+ +A Y + Sbjct: 51 AINNSKTPNLDKFIASLGIEHIGEVAAKKIANNYGDRWLELTLEELLAL----------- 99 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 G+ +A + +EF + N+ ++ LL+ ++P + E + K +V TGTL + Sbjct: 100 -DGFGEAMALSYLEFMRV--NLEKIKELLEFITPKMQNLELKTN-IFSGKTVVITGTLSR 155 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 R + + + GA VS+ +S+KTD ++ G+ GSKLEKA +LGV+ ++E ++ L Sbjct: 156 -SRDEFKAELESYGAKVSSSVSKKTDFVLYGNEAGSKLEKANELGVRAIDESEYESL 211 >gi|269469037|gb|EEZ80601.1| NAD-dependent DNA ligase [uncultured SUP05 cluster bacterium] Length = 398 Score = 164 bits (416), Expect = 3e-38, Method: Composition-based stats. Identities = 103/436 (23%), Positives = 196/436 (44%), Gaps = 55/436 (12%) Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348 + + + +D+DG+V++V +L+ +G + RW I+ K + +A ++L + Q+GR Sbjct: 13 ERVLQMVDFDVDGVVFEVTNENLKNYMGANRKFHRWQIAFKENKDKAQVKVLSVTPQVGR 72 Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408 TG +TPVA LEP + GA I AT H+ +K + + G + + R+G Sbjct: 73 TGKITPVAELEPTLLSGATIVRATGHHYGLVK-----------EQGLGAGSVIELTRSGL 121 Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 VIPK+ ++ + P P CP C + + + C C AQ Sbjct: 122 VIPKINQVL------KSAPVKIPKLCPSCSEALEWESD--------FLMCVNHDLCPAQV 167 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 + ++++F A N +G G ++ ++ IR + I+ L + Sbjct: 168 IGKMEYFFKILANN-DGFGIATIEKLYEHG-----IRKISQIYALSASDLSDM------- 214 Query: 529 GFGDVSVTNLYDSINKRRNISL--ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 GFGD + TNL + + + N + RF+ + G+ +G +L K Y + F Sbjct: 215 GFGDKTSTNLVNQLKRSTNEQIEDWRFLAAFGVVRMGTGNCENLLKSYPLNEIF------ 268 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN-PRNICAVEALLKEVSP-SIGRHEKNVS 644 + + + ++ AQ IV + + + S+ ++ + + Sbjct: 269 -----ELNLEQISAIDGFAELTAQMIVTGLKIIQTEFNLLSRYRFNLEITSLQKNLEEFT 323 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQ 703 + KK+VFTG +Q R K +++ +G + +S KTD ++VG+ G K+E A++ Sbjct: 324 HVLFGKKIVFTGKMQG-SRDKMKKHAKSIGIKILTSVSAKTDYLVVGEKVGQKKIESAKK 382 Query: 704 LGVKIMNEEQFLFLLQ 719 GVK+++EE + ++ Sbjct: 383 FGVKVLSEEDYQATIE 398 >gi|330940502|gb|EGH43581.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. pisi str. 1704B] Length = 561 Score = 164 bits (416), Expect = 4e-38, Method: Composition-based stats. Identities = 114/614 (18%), Positives = 210/614 (34%), Gaps = 96/614 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 S +AR E+++L+Q+I+ DD Y++ I D YD +++ F A S Sbjct: 25 CPDWSAAKARSEITALQQQIAAGDDSYHRQGISQIPDELYDQARQKLSLWRSCF---AVS 81 Query: 69 EDPNGPLNK-IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + PL +G H +P + K+ + ++ ++ W Sbjct: 82 TPESNPLKTAVGPLP--------HPVPHTGVNKLADEGSVKDWLKGRNDLW--------- 124 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 ++PK+DG +T+ YE+G+ V A RGDG G+D + R I TIP+ L + + Sbjct: 125 --IQPKVDGVAVTLVYEQGQLVQAISRGDGRKGQDWTLQARLIKTIPQQLPQAESPV--L 180 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247 +GE+Y +D + N R+ +G+L +G Sbjct: 181 QGELYWRLDDHIQAAS--------GSVNARSKVAGLLA------RQTISPQQADAIGLFV 226 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + G +M Q++ L + + P + Sbjct: 227 WDWPNGPADMAQRLAGLQAMGFEDSAAYTHPLQNYAQAARGREHWYRNPLPFATDGVIMR 286 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +A +P W+ + K QA + ++ +IGR+G +TPV L PV + Sbjct: 287 QGQRPPAQRWQASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVRLDDRT 346 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ + DIR GD++ V AG IP++ ++ Sbjct: 347 VSRIS-----------TGSLQRWQTLDIRPGDQIAVSLAGLTIPRLDGVVSRAAERADMI 395 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGL 486 C C +Q RL + + G+ Sbjct: 396 I-------------------PRADDFHELSCWQATPGCESQFRARLAWLSGKKGLALPGV 436 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ + D TL + + I GF + S L DS+ R Sbjct: 437 GPGTWNTLIENGQIMGLL----DWMTLNHAELVN------IPGFAERSSAKLLDSLQTAR 486 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + ++ ++G+ G A+ +N + P +G Sbjct: 487 ERPFQTWLKAIGLPPTGG----------------ARLPDNWHELADRSVEQWQAEPGIGP 530 Query: 607 IIAQAIVEFYQNPR 620 A + F+Q+P+ Sbjct: 531 GRAARLRAFFQDPQ 544 >gi|153831457|ref|ZP_01984124.1| DNA ligase [Vibrio cholerae 623-39] gi|148873061|gb|EDL71196.1| DNA ligase [Vibrio cholerae 623-39] Length = 373 Score = 164 bits (416), Expect = 4e-38, Method: Composition-based stats. Identities = 149/394 (37%), Positives = 230/394 (58%), Gaps = 29/394 (7%) Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238 + P +EVRGEV++ K F ALN + G K + NPRNAA+G LR+L+ R L F Sbjct: 7 DFPTRLEVRGEVFMPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAF 66 Query: 239 FVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 + + +G A Y+ +++ G P+ + + + ++Y ++ R +L Y Sbjct: 67 YAYSVGVIEGGELATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAY 126 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 +IDG+V KVD+ LQ++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+ Sbjct: 127 EIDGVVIKVDDIQLQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAK 186 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 LEPV +GG ++NATLHN D I+ L + VGD V+++RAG+VIP++V ++ Sbjct: 187 LEPVFVGGVTVSNATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVV 235 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 + R +A+ FP+ CP+CQS V R A RC+GGL C AQ+ E LKHFVS Sbjct: 236 LERRPENAKSIVFPTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVS 289 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R A ++EGLG + ++ E + PAD+F L+ ++ + G S N Sbjct: 290 RKAMDVEGLGDKVIEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQN 339 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 + D++NK + +L +F+++LGIR VG A +LA Sbjct: 340 VIDALNKAKQTTLPKFLYALGIREVGEATALNLA 373 >gi|330859974|emb|CBX70302.1| DNA ligase B [Yersinia enterocolitica W22703] Length = 527 Score = 164 bits (416), Expect = 4e-38, Method: Composition-based stats. Identities = 102/617 (16%), Positives = 204/617 (33%), Gaps = 93/617 (15%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 LE+++ + Y+Q I D YD L+ + P+ + Sbjct: 4 LEKQLDQWNIAYHQQGISPIADDIYDQLQDKLHRWR------LCLGLPDKTDIR----PI 53 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 K+ H + L+K+ + L ++T W ++PKIDG +T+ Y Sbjct: 54 PGNGKMLHPVAHTGLKKLKDEAALISWMTGRKDLW-----------VQPKIDGVAVTLVY 102 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 + GK RG+G G++ + I IP+ ++ P ++ ++GEV++ Sbjct: 103 QAGKLTQVLSRGNGLKGQNWADKAPFISAIPQYIASAPP-LLTLQGEVFLQMEGHQQAQS 161 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263 AN R + +G L R + + + L F+ + E + ++ Sbjct: 162 --------GGANARASVAGALMRKSVSPLLAKLGIFIWAWPDGPKSMV----EKSRLLQE 209 Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323 +GFP+ + + + LP+ DG+V + + + Sbjct: 210 MGFPLTAHYSE-PVISSSDVAQWRDRWFKMPLPFVTDGVVIRQENVPAGRYWQATPG--N 266 Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383 W ++ K+ Q T + DI +GRTG +T + ++ PV I I + Sbjct: 267 WSVAWKYPPPQQITEIKDIHFTVGRTGKITAILQVVPVKIDDKWIRRVNI---------- 316 Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443 DI GD+V + AG+ IP++ +I + Sbjct: 317 -GSIARWRLWDIVPGDQVTISLAGQGIPRLDKVIWRVSQ-------------------RQ 356 Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503 ++ P C L + + ++ + + ++ Sbjct: 357 EIVPPDADKFHQLTCFRRLPFECEPQFLSRLAWLSGTNGLDM--QSVGNGLWRELIHHGF 414 Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563 I D +L Q I + G G +Y + R +++ +LG Sbjct: 415 INGLLDWLSLSVEQ------IAAVPGIGQGRAEKIYQQFQRARQQPFSQWLQALG----- 463 Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623 + +++ +W + P +G + A+ I F +P Sbjct: 464 ----------FPQGIPLDSSWHSLRQRGIAEWRLM---PGIGQVRAKQINHFLHHPEVQM 510 Query: 624 AVEALLKEVSPSIGRHE 640 + L ++ E Sbjct: 511 MADFLSQQGIAGFSPEE 527 >gi|70733074|ref|YP_262847.1| NAD-dependent DNA ligase LigB [Pseudomonas fluorescens Pf-5] gi|123761963|sp|Q4K4I6|LIGB_PSEF5 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|68347373|gb|AAY94979.1| DNA ligase, NAD-dependent, putative [Pseudomonas fluorescens Pf-5] Length = 556 Score = 164 bits (415), Expect = 4e-38, Method: Composition-based stats. Identities = 124/609 (20%), Positives = 226/609 (37%), Gaps = 93/609 (15%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A E+++L+Q++ D YY+ + ++ D YD ++R FP R+ + PL Sbjct: 28 ATDEITALQQQLQRWDSSYYRDGRSLVADELYDQARQRLLTWRQCFPQAPRAM--DQPLL 85 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 GG + H IP +EK+ + + ++ W +PK+DG Sbjct: 86 GAGG-------SIRHPIPHTGVEKLADANAVTGWLKGRDDIW-----------AQPKVDG 127 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 +T+ Y +G+F A RGDG G D + I IP L P + ++GE+Y+ Sbjct: 128 VAVTLIYHRGQFQQALSRGDGVHGHDWTRAAWQIEAIP--KRLPRPVDLLLQGELYLRLE 185 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 R RN +G + R T +G + +G Sbjct: 186 --------QHVQARSGSLKARNRVAGWMARKQLTAAEAA------QIGLFVWDWPQGPAT 231 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + +++ L R+ + G + + ++ P + + Sbjct: 232 LSERLEQLADLGFAEPREYSRPVGGFADAQQWRARWYRSPLPFASDGIILRQSRRPAAER 291 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +A++P W+ + K+ Q + +D +IGRTG +TP+ +EPV + I +L Sbjct: 292 WQAKAPYWIAAWKYPYAQVLASVRQVDFRIGRTGRITPLLEIEPVTLDDRQIRRVSL--- 348 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DI GD+V + AG IP++ ++ + Sbjct: 349 --------GSLQRWRSLDIVPGDQVAISLAGLSIPRLDEV-------------------V 381 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +S + + + P C C Q L RL S+ N++ +G + Sbjct: 382 LRSTLRQSIQPPREADFHFLSCWQPSPGCEEQFLARLTWLSSKQGLNLQNIGSRTWARLV 441 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 ++ + D TL + ++ NI GFGD S L +S++ R R++ Sbjct: 442 ETGRIKGLL----DWLTLDQ------AELANIAGFGDRSSKRLLESLHSARQQPFPRWLK 491 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGI G+ A +Q + N + N+ +G A +V F Sbjct: 492 ALGIPPSGS------ADLSGPWQAL--AMKNSLDWQNEA--------GIGAERAAQLVAF 535 Query: 616 YQNPRNICA 624 ++ P + Sbjct: 536 FRAPEVLAL 544 >gi|288550204|ref|ZP_05969603.2| hypothetical protein ENTCAN_08224 [Enterobacter cancerogenus ATCC 35316] gi|288316113|gb|EFC55051.1| NAD-dependent DNA ligase adenylation domain protein [Enterobacter cancerogenus ATCC 35316] Length = 548 Score = 164 bits (415), Expect = 5e-38, Method: Composition-based stats. Identities = 122/618 (19%), Positives = 214/618 (34%), Gaps = 96/618 (15%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A KE+++L + D+ Y++ + D YD L R F + PL Sbjct: 19 KAEKEIAALSAQKIRWDEAYWKEGTSEVSDEIYDQLTARLAQWQRCF----SNAPAESPL 74 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 V H I ++K+ + E LR+++ W ++PK+D Sbjct: 75 -----PALKG--TVKHPIAHTGVQKVASKEALRQWMYARRDLW-----------VQPKVD 116 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +T+ Y G A RGDG GED +A +RA+P +P+ ++GE+++ + Sbjct: 117 GVAVTLVYRNGTLSQAVSRGDGVKGEDWTAQVRAMPLVPQSTEGA-LANSVLQGELFLLR 175 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 ++ + N R +G + R + + + F+ + + Sbjct: 176 DN--------HIQQQMGGMNARAKVAGAMMRHADASLLKQIGVFIWAWPDGPKAMQQHLT 227 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 ++ Q L V+ A+ +++ S LP+ DG+V + + Sbjct: 228 QLSQSGFDLTARYTLPVQSADEVEKQRAHWF-----TSPLPFVTDGVVVRSA--AEPAGD 280 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 W+I+ K+ + DI +GRTG ++ VA L PV + + +L + Sbjct: 281 RWLPGEGNWVIAWKYTPVSQVADVRDIQFAVGRTGKISVVALLAPVQLDDKRVQRVSLGS 340 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D DI GD +L+ AG+ IP+ Sbjct: 341 VD-----------RWQRLDIAPGDHILISLAGQGIPRFE--------------------K 369 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 + V R + C C Q RL S +++GLG+ Sbjct: 370 VIWRGVERQKPRPPASQFHSLTCFYASPECMDQFFSRLTWLSSTQGLDVKGLGEAGWRAL 429 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 ++ A L + Q ST GF L+ N R R+I Sbjct: 430 YQ----AHHFEHIFSWLRLNQAQIQST------PGFSAARGVALWHRFNLIREQPFIRWI 479 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEIN-NIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 ++GI A + + A + +P G A IV Sbjct: 480 TAMGIPVTKAT--------------LNAAGDTSWQAMRSRRAEEWQHLPGTGKEKALQIV 525 Query: 614 EFYQNPRNICAVEALLKE 631 E+ +P+ + A+ A L E Sbjct: 526 EWLHHPQ-VEALAAWLAE 542 >gi|156936180|ref|YP_001440096.1| NAD-dependent DNA ligase LigB [Cronobacter sakazakii ATCC BAA-894] gi|166226363|sp|A7MQB5|LIGB_ENTS8 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|156534434|gb|ABU79260.1| hypothetical protein ESA_04079 [Cronobacter sakazakii ATCC BAA-894] Length = 561 Score = 164 bits (415), Expect = 5e-38, Method: Composition-based stats. Identities = 114/627 (18%), Positives = 225/627 (35%), Gaps = 96/627 (15%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 + +QA++E+++LE +++ D+ Y+ + + + D+ YD++++R A F L Sbjct: 20 ACPDWTPQQAQQEVAALENQLTRWDEAYWLHGENKVSDAVYDSMRQRLRAWQTCF-ALPV 78 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 D + L+ + H + ++K+ + L +++ Sbjct: 79 FND---------APVALAAGRTRHPVAHTGVQKLNDATSLSQWM-----------HGKTD 118 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 ++PK+DG +++ Y KGK RGDG GED +A R IP IP ++ + Sbjct: 119 LWVQPKVDGVAVSLVYRKGKLQQVISRGDGERGEDWTARARHIPAIPLQVTGE-LADSVL 177 Query: 188 RGEVYISKNDF-LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246 +GE+++ + + + A G+ A R+ S +L L+ Sbjct: 178 QGELFLRQTGHRQQQDGGINARGQVAGAMMRSTVSSVLNDLDL-------------FIWA 224 Query: 247 SEIFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 K L + GFP + ++ + + LP+ DG+V + Sbjct: 225 WPDGPKAMEARLSTLAEGGFPLAQAWSKPVHSVSDVARLREQW--FSEPLPFVTDGVVIR 282 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 K S W+++ K+ + T + + +GRTG ++ VA+LEPV + Sbjct: 283 EGREPPGKSWRPGEGS--WVVAWKYPPAKQITEIKALRFAVGRTGKISVVAQLEPVTLDD 340 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ ++ D+ GD+V + AG+ IP++ Sbjct: 341 KKVSKVSI-----------GSLARWEKLDLAEGDQVEISLAGQGIPRLD----------- 378 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIE 484 + R C C Q + RL + F++ Sbjct: 379 ---------AVIWRPTQRIKPVPPTARFDTLSCLYGTTGCEEQFISRLVWLSGKHVFDLA 429 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+G+ + L S ++ GF L+ N Sbjct: 430 GMGEATWRQLSEH----------HHFEHLFSWLALSVDALKQTPGFSAQRAAQLWHQFNL 479 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 R +R++ +LG+ + A ++L + + A + W +L P V Sbjct: 480 TRQQPFQRWVKALGL-PLPARDWQALTD---------DKWQQLQARDERSWQTL---PGV 526 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKE 631 G A+ +V + +P E L + Sbjct: 527 GAERARQLVSYIHHPDIAALAEWLAAQ 553 >gi|302844550|ref|XP_002953815.1| hypothetical protein VOLCADRAFT_118457 [Volvox carteri f. nagariensis] gi|300260923|gb|EFJ45139.1| hypothetical protein VOLCADRAFT_118457 [Volvox carteri f. nagariensis] Length = 1842 Score = 164 bits (415), Expect = 5e-38, Method: Composition-based stats. Identities = 136/546 (24%), Positives = 209/546 (38%), Gaps = 136/546 (24%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++L LE +S+H+D YY + I D+ YD LK + +A L + Sbjct: 89 QQLRQLESALSHHNDLYYNQQRTEISDAAYDTLKLQYRQLAAQ---LRGELPLEELELPV 145 Query: 79 GGEM--NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-------------- 122 G + L KV H + LSL + + E+ ++ + Q Sbjct: 146 GAPPPASGGLRKVPHRVAMLSLAAVNSREEAETWLDKTLAKLQADAGGGGGNDAGGGGGA 205 Query: 123 --------------------------------------DNSIFFTLEPKIDGTMITIRY- 143 S + +EPK+DG + + Y Sbjct: 206 GMVRGGGGGGGGGGQKGVQKKKATKKSKTGADVPASSVGRSYRWVMEPKVDGLAVRVLYG 265 Query: 144 --EKG--KFVYAALRGDGHSG------------------EDVSACIRAIPTIPRVLSLNI 181 G AA RGDG G D + + + Sbjct: 266 RTAHGTYILKEAATRGDGWLGRGSHIAASISPSPAGAANHDGDGNEWENGSAASAPAADC 325 Query: 182 --PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NF 238 PE +E RGEV+ D +N E AVG+ P+AN RNAASG +R L+P + R +F Sbjct: 326 GAPEWVEARGEVFCRTADLELVNREQEAVGQPPFANTRNAASGAVRLLDPAECRRRRLSF 385 Query: 239 FVH-------------------------------------------GLGKTSEIFAKGQY 255 + G + Q+ Sbjct: 386 VAYAALAPSPPPSPSQQRRPEPATTTPPPSSSSPPPYPSSPSNRSSGNAAAVQPLHPSQW 445 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + LQ ++ GF V+ R ++ ++ E R+TL YD DG V K+D+ +L L Sbjct: 446 DTLQWLKSAGFSVSPDNRLCDSREEVLGAVEEWMEKRATLGYDADGAVIKLDDTTLYDIL 505 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G PRW ++ KF ++A TR+ +++ +GR G +TPVA L PV +GG I A+LHN Sbjct: 506 GTAGSDPRWAVAWKFPGEEAVTRVTGVELTVGRQGQITPVALLSPVVVGGVTIRRASLHN 565 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 + L GD V+V+R+G+VIP+VV ++ R P A+ + PS CP Sbjct: 566 LGLARALGLHL----------PGDAVVVRRSGDVIPQVVRVLPELRPPGAELWQPPSACP 615 Query: 436 ICQSRV 441 C + Sbjct: 616 ACGGPL 621 Score = 57.5 bits (137), Expect = 9e-06, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 8/107 (7%) Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 + GFG L S+ R++S + L I VG A +L + + S + A E+ Sbjct: 786 LPGFGPARTAALMSSLESSRHMSPGTLLRGLNIPRVGEVAAEALGRAFPSLELLAAEVPY 845 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 V +A+ + ++Q P N + L + Sbjct: 846 ADRIAAAA--------GVAPSVARNVANWFQQPANQRLLARLREAGV 884 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 6/61 (9%) Query: 647 IENKKLVFTGTL-----QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEK 700 +E ++ TGTL + + R++ + + GA + + T +++ G G K K Sbjct: 977 LEGMRVCVTGTLMGPYGKGLVRNEMRRMLEAAGAEFHLTVKKDTQVLLAGTGAGERKTRK 1036 Query: 701 A 701 A Sbjct: 1037 A 1037 >gi|37524304|ref|NP_927648.1| NAD-dependent DNA ligase LigB [Photorhabdus luminescens subsp. laumondii TTO1] gi|81420505|sp|Q7N9N4|LIGB_PHOLL RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|36783727|emb|CAE12581.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 580 Score = 164 bits (414), Expect = 6e-38, Method: Composition-based stats. Identities = 110/609 (18%), Positives = 215/609 (35%), Gaps = 87/609 (14%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 S ++ ++E +SL Q++++ D Y Q I D YD L Sbjct: 31 CPEWSQDKLQRETNSLMQQMAHWDQLYRQKGISEIDDEVYDQLMSELT-----HWQFCLK 85 Query: 69 EDPNGPLNKIGGEMNLSL--FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 + P+ K+ H + L K+ + +++ +++ + Sbjct: 86 QAPHS------DFPVEVFPDNKLVHPVAHTGLSKLKDKQEINRWL-----------HGRL 128 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 L+PKIDG +T+ Y+ GK V RG+G G + +A R IP IP+ + P++ Sbjct: 129 PVWLQPKIDGVAVTLVYQNGKLVSLISRGNGAEGVNWTAKSRYIPDIPQNIENAPPDL-V 187 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246 ++GE+++ K + RN +G++ R + + + + F+ Sbjct: 188 LQGELFLHKEE--------HRQQLLGSDGARNRVAGLMMRKDHSSELKQIGLFIWSWPDG 239 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 L+K+ +GFP+ V M + + DG+V K Sbjct: 240 PAEM----ESKLRKLADMGFPLALRYSHKIEEPEQVQK-LRMHYFEQPMLFATDGIVLKQ 294 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + K R+ S W ++ K + T++ +++ IGRTG ++ V L+ V + Sbjct: 295 EI--EPKGNQWRSGSNSWAVAWKHPLRHQVTQVREVNFTIGRTGKISVVLGLDKVKLDDR 352 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 I+ + D+ GDRV + AG IPK+ ++ + Sbjct: 353 QISRVNI-----------GSVRRWRQLDVLPGDRVTLTLAGHGIPKLAQVVWRIKE---- 397 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 +D+ P + A C L +Q + + + G+ Sbjct: 398 ---------------RQDIQPPDKQHYHALSCLT-LTVGCEQQFNARLKWLGENLQMTGV 441 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 + + + L S +I + G GD +Y +K + Sbjct: 442 SSGSWAMLTERKL----------VTDLTGWLALSAQQIAALPGIGDKRAQAIYSQFSKAK 491 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL-VG 605 N ++ +G+ ++ L+ +Q Q++ L ++ V Sbjct: 492 NQPFSYWMKGIGVPYM-----DKLSDNVYHWQQLEQKLAAAQLKQQLTVGQLKKLSDFVS 546 Query: 606 DIIAQAIVE 614 D +AI E Sbjct: 547 DAQIKAIAE 555 >gi|291562521|emb|CBL41337.1| NAD-dependent DNA ligase (contains BRCT domain type II) [butyrate-producing bacterium SS3/4] Length = 169 Score = 164 bits (414), Expect = 6e-38, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 18/186 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ K + L +S YYQ S+ I+ + EYD L + + Sbjct: 1 MDDKIKRMKELIPILSEAAKAYYQESREIMSNFEYDRLYDELLKLEQE----TGTVFAGS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+G E+ L K H P LSL K ++++LR+++ L K Sbjct: 57 PTQKVGYEVLSELPKERHERPMLSLNKTKSVDELREWL------------GGQTGLLSWK 104 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG + + YE G A RG+G GE +++ R IP ++ + +RGE I Sbjct: 105 MDGLTVVLTYEDGVLAKAVTRGNGEIGEVITSNARTFINIP--TTIPYKGQLILRGEAVI 162 Query: 194 SKNDFL 199 S +DF Sbjct: 163 SYSDFE 168 >gi|291335083|gb|ADD94712.1| NAD dependent DNA ligase [uncultured phage MedDCM-OCT-S09-C23] Length = 717 Score = 163 bits (413), Expect = 8e-38, Method: Composition-based stats. Identities = 136/752 (18%), Positives = 245/752 (32%), Gaps = 124/752 (16%) Query: 24 LEQEISYHDDCYYQYSKPII----LDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 L + ++ D YYQ P I D+ YD + + F G +G Sbjct: 25 LREVLACFDRLYYQ---PTIDEGIPDAIYDQVV---EIYDSKFGKKKTYHQKKG----VG 74 Query: 80 GE--MNLSLFK-VTHSIPTLSLEKIWN------IEDLRKF------ITRIYRFWQKKDDN 124 + + K V ++ K ++ + L K+ + + W+KK Sbjct: 75 AKGVASTDTRKDVKLPYYMGTVNK-FSAMMVDADKGLSKWRSKPVNYEKKFNAWKKKY-P 132 Query: 125 SIFFTLEPKIDGTMITIRYE--KGKFVY-AALRGDGHSGEDVSACIRAIPTIPR------ 175 +T+E K DG + YE G RG G +G+D+S I+ + Sbjct: 133 KGPYTIEGKADGISCLLIYEKKNGTIKRTIYSRGTGKTGKDLSRYIQNLRDGFNLIPSGE 192 Query: 176 VLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL-NPTDITR 234 I +RGE+ + + + ++NPRN G + + N TR Sbjct: 193 DFDFPPENKIVIRGELVMRYRVWKRKYSD-------DFSNPRNIVGGFVTKKTNSGVSTR 245 Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 + F + Q + L++M V+ + + + KS R Sbjct: 246 DIEFVSYEKLVPRNETRFDQIKTLKRMGFATVEVSQLTKNSELTEKNLFKIL--KSFRKK 303 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 PY+IDGLV D+ + E S ++K + A ++ ++ T L P Sbjct: 304 SPYEIDGLVVFADDKVRKVSDKEVLDS---AFAYKVNAQTAIAEVVGVEWSSSTTNALKP 360 Query: 355 VARLEPVNIG---------GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKR 405 V +PV IG GAL AT N ++IK I G ++L+ R Sbjct: 361 VVVYKPVTIGRVMEDGSIVGALYRRATAFNANFIKK-----------NKIGPGAKLLIVR 409 Query: 406 AGEVIPKVVDIIVNERH--PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463 +G+VIP + I+ + P+ + P + + + + + Sbjct: 410 SGDVIPHIEQILKQGKPDLPNKARAAQPKYNYKGHPEINFEWGDGKNRRSKLDIFAVEML 469 Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK 523 A+ + F + + F I Sbjct: 470 DDAKIQQMDLFFSGGRQKRGMNIKGIAKKTLRQLFQEGF--DSITSILQASEEDLAEALG 527 Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583 + ++ + + I +F HV + A + Y Sbjct: 528 KPGVAANIKKAIDERFSTPVDLSQIMGASQVF----PHVRTKTATKIIAKYP-------- 575 Query: 584 INNIIAHNNDDWLSLIRVPLVGDII----AQA---IVEFYQNPRNICAVEALLKEVSPSI 636 I+ N + + V VG A A F ++ I Sbjct: 576 --KIMKMNAKELKKIKDVSGVGQETLDGFAAAMPGFKLFLRDNPQIKIASK--------- 624 Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV------ 690 +K S++++ K VFTGT+ K++R AQ V +G L + D +++ Sbjct: 625 SVTKKPTSNKLQGKIFVFTGTMDKMRREDAQNLVEDMGGKAPGTLKKNVDFLVIGDKGGA 684 Query: 691 ----GDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 L +A++ I++E FL ++ Sbjct: 685 GKKK-------LAQAEKFDTPIISETDFLTMI 709 >gi|206576543|ref|YP_002235985.1| NAD(+)-dependent DNA ligase LigB [Klebsiella pneumoniae 342] gi|257096557|sp|B5XTF0|LIGB_KLEP3 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|206565601|gb|ACI07377.1| NAD(+)-dependent DNA ligase LigB [Klebsiella pneumoniae 342] Length = 558 Score = 163 bits (413), Expect = 9e-38, Method: Composition-based stats. Identities = 109/611 (17%), Positives = 204/611 (33%), Gaps = 90/611 (14%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+E+S L Q+I + Y++ + D YD L R FP ED + P Sbjct: 30 RQEISRLHQQIVAWKEDYWRQGASEVSDEVYDQLTLRLAQWRQCFPG-TTPEDDDLP--- 85 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 H + + K+ + + ++ N ++PK+DG Sbjct: 86 ---PPTGD---ARHPVAHTGVRKLADEVSVAHWMK-----------NKTDLWIQPKVDGV 128 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +T+ Y +G V A RGDG GE +A R IP + +V + ++GE+++ ++ Sbjct: 129 AVTLVYRQGSLVQAISRGDGLRGEAWTARARQIPALAKVTTGE-LANSVLQGELFLRRDG 187 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 + N R +G++ R + L+ F+ + Q + Sbjct: 188 --------HVQQQAGGMNARAKVAGLMMRADAAAALSQLDVFIWAWPDGPSDMRRRQQLL 239 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 Q + V + + S LP+ DG++ + Sbjct: 240 TQAGFKYSGQYTHPVTRVEQVAQWRQRWYR-----SPLPFVSDGVIVREGR--EPPGRAW 292 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 W+ + K+ + I GR+G L VA+LEP + + + Sbjct: 293 SPGKGEWLAAWKYPPASQVMEVRAIHFSTGRSGRLNVVAQLEPQRLDDKRVQRVNV---- 348 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 DI VGD++ + AG+ IP++ ++ Sbjct: 349 -------GSVARWQALDIGVGDQLQISLAGQGIPRIDAVVWR------------------ 383 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 + P K A CS Q L RL S+ A +++G+G+ +++ Sbjct: 384 -TAERHKPTPPAAKFNALTCYFATPECSEQFLSRLIWLSSKSALDVDGVGEH----LWRA 438 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + L Q + + G +L+ + R R++ ++ Sbjct: 439 IQQQNPMTHIFSWLALTVEQLQA------VPGISAARGQHLWHQFDLVRKRPFIRWVLAM 492 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 G+ +A+ E N +P VG+I A+ +V F Sbjct: 493 GLPVPQGALAQL-------------ESENWHLLAAKSEAQWRALPGVGEIRARQLVAFLH 539 Query: 618 NPRNICAVEAL 628 +P + + L Sbjct: 540 HPDVVALAQWL 550 >gi|217032017|ref|ZP_03437518.1| hypothetical protein HPB128_187g44 [Helicobacter pylori B128] gi|216946327|gb|EEC24933.1| hypothetical protein HPB128_187g44 [Helicobacter pylori B128] Length = 157 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 53/171 (30%), Positives = 93/171 (54%), Gaps = 19/171 (11%) Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 I +LGI H+G +++LA+Y L+ ++ + + G +A+++ Sbjct: 1 MINALGIEHIGKGASKTLARYGLNVLEKSEA-------------EFLEMEGFGVEMARSL 47 Query: 613 VEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 V FY + N + +L + ++P + ++ SS NK +V TGTL K R + + Sbjct: 48 VNFYAS--NQEFIRSLFELLNPRNSDMAEEKQKSSSVFNNKTIVLTGTLSK-PRQEYAQM 104 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA +S+ +S KTD +I G+NPGSKL A++ GV ++NEE+ L L++ Sbjct: 105 LENLGAKISSSVSAKTDFLIAGENPGSKLALAKKHGVSVLNEEELLKRLKE 155 >gi|253987704|ref|YP_003039060.1| NAD-dependent DNA ligase LigB [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779154|emb|CAQ82314.1| similar to putative dna ligase-like protein yicf of escherichia coli [Photorhabdus asymbiotica] Length = 578 Score = 163 bits (411), Expect = 1e-37, Method: Composition-based stats. Identities = 116/643 (18%), Positives = 216/643 (33%), Gaps = 97/643 (15%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 A S ++ ++E SL Q+++ D Y Q I D YD L L Sbjct: 28 DCPAWSQDKLQRETKSLMQQMARWDQLYRQKGISEIDDEVYDQLMADLI-----HWQLCL 82 Query: 68 SEDPNGPLNKIGGEMNLSLF--KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 ++P+ K+ H + L K+ + ++ +++ Sbjct: 83 KQEPHS------DFPATVFPDNKLVHPVAHTGLSKLKDEREINRWL-----------HGR 125 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + L+PKIDG +T+ Y++GK V RG+G G D +A I IP+ + P + Sbjct: 126 LPVWLQPKIDGVAVTLVYQQGKLVSLISRGNGSEGVDWTAKSPYISEIPQEIENAPPY-M 184 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245 ++GE+++ KN RN +G++ R + + + F+ Sbjct: 185 VLQGELFLHKNG--------HIQQSSGSDGARNRVAGLMMRKEHSPELKQVGVFIWSWPD 236 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 LQK+ +GFP+ V M +P+ DG+V K Sbjct: 237 G----PVDMDGKLQKLANMGFPLALRYSHKIERPEQVQK-LRMHYFEQPMPFATDGIVLK 291 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 + K R+ S W ++ K + T++ ++ IGRTG ++ V L+ V + Sbjct: 292 QEI--EPKGNQWRSGSNSWAVAWKHPLRHQVTQVREVSFTIGRTGKISVVLGLDKVKLDD 349 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ + D+ GDRV + AG IPK+ ++ + Sbjct: 350 RQVSRVNI-----------GSVRRWQQLDVLPGDRVTLTLAGHGIPKLAQVVWRIKE--- 395 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 +D+ P + A C A QQ ++ ++ G Sbjct: 396 ----------------RQDIQPPDKQRYHALSCLTLTAGCEQQFNARLKWLGE-HLHMTG 438 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 + + + + L S I + G GD +Y +K Sbjct: 439 VSSGSWAMLTEQKL----------VTDLTSWLTLSVQDIAALPGIGDKRAQAIYSQFSKA 488 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 +N ++ +G+ ++ L+ +Q Q++ L + Sbjct: 489 KNQPFSYWMKGIGVPYM-----DKLSNDVDHWQQLEQKLAEAQLKQQLTSGQLKK----- 538 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648 + EF + R E L GR + + Sbjct: 539 ------LSEFVNDTRIKAIAEKLSVSGIKGFGRENGAGPNPVS 575 >gi|195940543|ref|ZP_03085925.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. EC4024] Length = 98 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 3/101 (2%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI 114 P ++G + ++ H +P LSL+ +++ E F R+ Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRV 98 >gi|283787721|ref|YP_003367586.1| DNA ligase [Citrobacter rodentium ICC168] gi|282951175|emb|CBG90867.1| putative DNA ligase [Citrobacter rodentium ICC168] Length = 560 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 121/623 (19%), Positives = 210/623 (33%), Gaps = 103/623 (16%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----- 62 S +A++E+S L Q+I+ DD Y++ K I D YD L+ R F Sbjct: 20 ACPNWSSARAQEEISRLRQQIARWDDDYWKKGKSAIEDGVYDQLRTRLGDWQRCFGGDAT 79 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P L + IGG V H + ++K+ + L++++ W Sbjct: 80 PALLPA---------IGGT-------VAHPVAHTGVKKLTDKRALQQWMAGRDDLW---- 119 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 ++PK+DG +T+ Y G+ A RGDG GED +A ++ I +P+ ++ Sbjct: 120 -------VQPKVDGVAVTLVYRNGRLTRAISRGDGLKGEDWTAKVQQIAAVPQTVTGG-L 171 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHG 242 ++GE++ ++ + N R +G+L R T F+ Sbjct: 172 ANSVLQGEIFWPQD--------RHIQQKMGGKNARAKVAGLLMRRETTSEIASQGIFIWA 223 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + A+ ++ Q L V+ A S++ S LP+ DG+ Sbjct: 224 WPDGPQSMAEKVTQLSQAGFTLTERFTLAVKNAQEVERARSHWW-----SSGLPFVTDGV 278 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V + W+ + K+ + I +G++G + VA L PV Sbjct: 279 VVRTG--KEPGARYWLPGQGNWLAAWKYPSVAQVAEVTAIRFMVGKSGKIAAVATLMPVM 336 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + + L DI GD++L+ AG+ IP++ Sbjct: 337 LDDKRVQRVNL-----------GSVRRWQEWDIAPGDQILISLAGQGIPRID-------- 377 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAF 481 + V R A C C Q + RL SR Sbjct: 378 ------------KVVWRGVDRTKPVPPKDRFNALTCFYATDACQEQFISRLAWVGSRGVL 425 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +IEG G+ + A L Q GF L+ Sbjct: 426 DIEGTGEAGWRALHQHHHFA----HIFSWLGLTLEQIQ------LTPGFTKARGEKLWHQ 475 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 N R +R++ ++GI L + L+ + A + W L Sbjct: 476 FNLARKKPFKRWLLAMGIP---------LTQAALNISG-DSSWPQLAAQSEKHWRQL--- 522 Query: 602 PLVGDIIAQAIVEFYQNPRNICA 624 P G A +++E+ + + Sbjct: 523 PGTGAGRAASVIEWIRCAEIVAL 545 >gi|307128799|ref|YP_003880815.1| DNA ligase [Dickeya dadantii 3937] gi|306526328|gb|ADM96258.1| DNA ligase [Dickeya dadantii 3937] Length = 561 Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats. Identities = 118/630 (18%), Positives = 228/630 (36%), Gaps = 91/630 (14%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 + A S +A +E++ L Q+++ D+ YY+ + + D YD L++ F Sbjct: 20 EAASCPAWSSTRAEQEITQLGQQLTQWDNAYYEQGQSPVDDQVYDQLRQTLATWQVCFQA 79 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 A + P + H + L+K+ +L+++I + W Sbjct: 80 DAGRFAISLPTT----------GRRQHPVAHTGLKKLSEPTELKQWIAQHNDLW------ 123 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 ++PKIDG +T+ YE+GK V A RG+G GED + +R + ++P+ L + Sbjct: 124 -----VQPKIDGVAVTLVYEQGKLVAAISRGNGRQGEDWTDKVRQMNSVPQQL-SAMSGR 177 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244 +GE+Y+ D + N R +G +RR P+ + + FV Sbjct: 178 QVFQGELYLQVTD--------HRQQQVGGINARAQVAGEMRRKQPSPLLSRIGVFVWAWP 229 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 L K+R LGF + Q + + + E + R+ LP+ DG+V Sbjct: 230 DGPADMP----ARLAKLRELGFGLTADYTQPVSSLEAAAQWRE-RWYRAPLPFVTDGVVV 284 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 + + + W ++ K+ T + +D+++GRTG +T V +L+PV + Sbjct: 285 RQAQ--EPAGRYWQDTPAEWAVAWKYPLVNRVTEVTGVDVEVGRTGRMTVVLQLQPVILD 342 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 ++ L D+ GDRV + AG IP++ ++ R Sbjct: 343 DKTVSRVNL-----------GSVSRWRQWDVLPGDRVSISLAGLGIPRLDAVVW--RGAV 389 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNI 483 + + P+ P C C Q L RL R+ ++ Sbjct: 390 REAITVPATSPFD-----------------VFSCLQWSRECQPQFLARLVWMSGRNGLSL 432 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 G+ + + + L+ Q + + ++ Sbjct: 433 SGISEATWQRLTQRGALVDVVS----WLALEPAQLAAAGDFG------EQQAERIHRQFQ 482 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 R L ++ +LG+ V + + +L + + + +W Sbjct: 483 LARRQPLRNWLLALGL-PVPSRVRHALD---------GASLEQLQQRSAAEWQQFS---G 529 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 +G AQ I +F + + + L + Sbjct: 530 IGVRRAQRIRDFLHHTDIVRQLAWLNEHGV 559 >gi|288932991|ref|YP_003437050.1| DNA ligase (NAD(+)) [Klebsiella variicola At-22] gi|288887720|gb|ADC56038.1| DNA ligase (NAD(+)) [Klebsiella variicola At-22] Length = 558 Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats. Identities = 109/611 (17%), Positives = 204/611 (33%), Gaps = 90/611 (14%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+E+S L Q+I + Y++ + D YD L R FP A ED + P Sbjct: 30 RQEISRLHQQIVAWKEDYWRQGASEVSDEVYDQLTLRLTQWRQCFPG-ATPEDDDLP--- 85 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 H + + K+ + + ++ N ++PK+DG Sbjct: 86 ---PPTGD---ARHPVAHTGVRKLADEVSVAHWMK-----------NKTDLWIQPKVDGV 128 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +T+ Y +G V A RGDG GE +A R IP + +V + ++GE+++ ++ Sbjct: 129 AVTLVYRQGSLVQAISRGDGLRGEAWTARARQIPALAKVTTGE-LANSVLQGELFLRRDG 187 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 + N R +G++ R + L+ F+ + Q + Sbjct: 188 --------HVQQQAGGMNARAKVAGLMMRADAAAALSQLDVFIWAWPDGPSDMRRRQQLL 239 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 Q + V + + S LP+ DG++ + Sbjct: 240 TQAGFKYSGQYTHPVTRVEQVAQWRQRWYR-----SPLPFVSDGVIVREGR--EPPGRAW 292 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 W+ + K+ + I GR+G L VA+LEP + + + Sbjct: 293 SPGKGEWLAAWKYPPASQVMEVRAIHFSTGRSGRLNVVAQLEPQRLDDKRVQRVNV---- 348 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 DI VGD++ + AG+ IP++ ++ Sbjct: 349 -------GSVARWQALDIGVGDQLQISLAGQGIPRIDAVVWR------------------ 383 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 + P K A CS Q L RL S+ A +++G+G+ +++ Sbjct: 384 -TAERHKPTPPAAKFNALTCYFATPECSEQFLSRLIWLSSKSALDVDGVGEN----LWRA 438 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + L Q + + G +L+ + R R++ ++ Sbjct: 439 IQQQNPMTHIFSWLALTVEQLQA------VPGISAARGQHLWHQFDLVRKRPFIRWVLAM 492 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 G+ + + E N +P VG+I A+ +V F Sbjct: 493 GLPVPQGALTQL-------------ESENWHLLAAKSEAQWRALPGVGEIRARQLVAFLH 539 Query: 618 NPRNICAVEAL 628 +P + + L Sbjct: 540 HPDVVALAQWL 550 >gi|238789535|ref|ZP_04633319.1| DNA ligase B [Yersinia frederiksenii ATCC 33641] gi|238722288|gb|EEQ13944.1| DNA ligase B [Yersinia frederiksenii ATCC 33641] Length = 565 Score = 161 bits (406), Expect = 5e-37, Method: Composition-based stats. Identities = 108/634 (17%), Positives = 213/634 (33%), Gaps = 97/634 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + + E++ L+Q++S D Y+Q ++ D+ YD L+ + Sbjct: 27 CPEWTESRISNEINLLDQQLSKWDIAYHQQGVSLLDDNVYDQLQDKLRGWREC------R 80 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ N+ + K H + L+K+ N L +++ W Sbjct: 81 GLPDKTNNR----LIPGNGKRLHPVAHTGLKKLKNEMALTNWMSGRKNLW---------- 126 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y+ GK RG+G G+ I IP+ P ++ ++ Sbjct: 127 -VQPKVDGVAVTLVYQAGKLTQLLSRGNGLKGQSWIDKAPFISAIPQY-IAMAPPLLTLQ 184 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ N R + +G L R + + + L F+ Sbjct: 185 GELFLQMEGHQQAQS--------GGVNARTSVAGALMRKSASPLLAKLGIFIWAWPDG-- 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E ++ +GFP+ + + R+ LP+ DG+V + +E Sbjct: 235 --PRNMVERTTLLQIMGFPLAAQYSK-SVTSSKDVIQWREHWYRAPLPFVTDGVVIRQEE 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + + W ++ K+ Q T + DI +GRTG +T V ++ PV I I Sbjct: 292 EPAGRYWRSASG--NWSVAWKYPPIQQLTEIQDIHFTVGRTGKITVVLQVSPVKIDDKWI 349 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + +I GD+V + AG+ IP++ ++ Sbjct: 350 RRVNI-----------GSMARWRQWNITSGDQVTIALAGQGIPRLDKVVWRV-------- 390 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRC--TGGLACSAQQLERLKHFVSRDAFNIEGL 486 + NP C L C Q + RL + +++ + Sbjct: 391 -----------DQRHEFNPPMADRFHQLSCFRLPPLECEQQLIARLTWLSGPNGLDMQSI 439 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + F++ I +L Q I + G G V ++ R Sbjct: 440 GSK----FWQEIVHHGLINNMVGWLSLTAEQ------IAAVPGVGPVRAEKIHQQFQLTR 489 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +++ +LG + + S + +P +G Sbjct: 490 KKPFSQWLPALGFPQGMPVGTQWHSLQQRSIAEWRL------------------IPGIGL 531 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 + A+ + F +P + L ++ E Sbjct: 532 VRAKQMSNFLHHPEVQAQADFLSQQGIAGFRPEE 565 >gi|57168175|ref|ZP_00367314.1| DNA ligase (NAD) Cj0586 [Campylobacter coli RM2228] gi|57020549|gb|EAL57218.1| DNA ligase (NAD) Cj0586 [Campylobacter coli RM2228] Length = 141 Score = 161 bits (406), Expect = 5e-37, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 15/156 (9%) Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 A+ LA + + + + G+ +A ++ EF + N Sbjct: 1 MAAKKLALSFG------------KEWHKQSLEAYANLEGFGEQMALSLCEF--SRVNSAR 46 Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684 ++ K ++ + + S I K V TG L + R + + + LG VS +S+K Sbjct: 47 IDEFYKLLNLKEQKVQIQEDSVIFGKTFVITGALSR-PRDEFKNLIESLGGKVSGSVSKK 105 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 TD ++ G GSKL+KAQ+LGVK ++E +F L+++ Sbjct: 106 TDYVLFGQEAGSKLDKAQELGVKCIDENEFNELIEK 141 >gi|170767052|ref|ZP_02901505.1| NAD(+)-dependent DNA ligase LigB [Escherichia albertii TW07627] gi|170124490|gb|EDS93421.1| NAD(+)-dependent DNA ligase LigB [Escherichia albertii TW07627] Length = 561 Score = 161 bits (406), Expect = 5e-37, Method: Composition-based stats. Identities = 107/625 (17%), Positives = 203/625 (32%), Gaps = 93/625 (14%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 A S +A E+S L+Q+I DD Y++ + I DS YD L R F + Sbjct: 21 ACPAWSPAKAHDEISRLQQQIKQWDDDYWKEGQSTIEDSIYDQLSARLAQWQRCFGEETN 80 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + V H + + K+ + + +++ Sbjct: 81 RDAI--------APPLHG--TVMHPVAHTGVRKLTDKNAVSQWMR-----------GRGD 119 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 ++PK+DG +T+ Y GK A RG+G GED + +R I ++P +S + Sbjct: 120 LWVQPKVDGVAVTLVYHDGKLSQAISRGNGLKGEDWTQKVRQISSVPHSVSGP-LANSTL 178 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247 +GE+++ + + N R+ +G++ R + L F+ Sbjct: 179 QGEIFLQRES--------HIQQQMGGMNARSKVAGLMMRQDNAGTLNSLGVFIWAWPDGP 230 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + + + L V+ A+ + + + K P+ DG+V + Sbjct: 231 QSMTDRLHLLATAGFALTQRYTRAVKNADEVECARNEWWKAKL-----PFVTDGVVVRGA 285 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + W+ + K+ + I +G++G ++ VA L PV + Sbjct: 286 KEPESSHW--LPGQADWLAAWKYQPVAQVAGVNAIQFAVGKSGKISVVASLAPVMLDDKR 343 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + + DI GD++L+ AG+ IP++ Sbjct: 344 VQRVNI-----------GSVRRWQEWDIAPGDQILISLAGQGIPRID------------- 379 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGL 486 + R + C C Q + RL S+ +EG+ Sbjct: 380 -------DVVWRGAERTKPVPPENRFNSLTCYFASDVCREQFISRLVWLGSKQVLGLEGI 432 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G+ ++ L + ++ N G L+ N R Sbjct: 433 GEAGWRTLHQT----------HRFEHLFSWLSLTPDQLHNTPGIAKSKSEQLWHQFNLAR 482 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 R++ ++GI A A S++ Q W L P G Sbjct: 483 KQPFTRWVMAMGI---PLTQAALNASDERSWEQLLQRTEQY-------WQQL---PGTGA 529 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE 631 A ++E+ ++ I + L Sbjct: 530 RRASKVMEW-KDNAQIKMLGNWLAA 553 >gi|109287930|ref|YP_654624.1| hypothetical protein MIV052L [Invertebrate iridescent virus 3] gi|123878657|sp|Q197A8|VF205_IIV3 RecName: Full=Putative DNA ligase 052L gi|106073553|gb|ABF82082.1| hypothetical protein MIV052L [Aedes taeniorhynchus iridescent virus] Length = 756 Score = 160 bits (404), Expect = 8e-37, Method: Composition-based stats. Identities = 106/790 (13%), Positives = 228/790 (28%), Gaps = 144/790 (18%) Query: 19 KELSSLEQEISYHDDCYYQY-SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN- 76 ++ + L + D YY PI+ D EYD L D + +P+G + Sbjct: 7 EKYNQLLKLKEKADKAYYNGVGDPIMSDEEYDNLVDYMDEL-----------NPDGGVKT 55 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 K+G + S V +P SL+KI + ++ ++ K+DG Sbjct: 56 KVGASPSRS-KSVKLPMPMNSLDKIKTQHEFDNWMKNWK--------PKAMLLVKEKLDG 106 Query: 137 TMITIRY--EKGKF--VYAALRGDGHSGEDVSACIRA----------------------- 169 + E+ K + RGDG +G +++ + Sbjct: 107 VSCLAVFTLEQNKPPKIELFTRGDGTTGTNITRLLNHGLKVGNDYCFDDMVNEDKWTTDW 166 Query: 170 ----IPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILR 225 + + +RGE+ +++ +F N RN SG + Sbjct: 167 GCYLNAEAIDHWKKLPVKKVYIRGELIVTRKNFQTWYSNRFM-------NARNLVSGQVN 219 Query: 226 RLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG-FPVNNGVRQANTFHGIVS 283 + +P + ++F + L + R +G PV + S Sbjct: 220 KKSPDPKILQDIDFVPYDLVIDLKRPTMTHEVEHLLFRMIGATPVYTRFLFLSDTISTES 279 Query: 284 YYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDID 343 + ++ + Y+IDGLV +VD R+P+ ++ K A T + ++ Sbjct: 280 MADYLERRKEKSDYEIDGLVIQVD--DDTLFAPPDNRNPKDTVAFKIMGTTARTTVTHVE 337 Query: 344 IQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLV 403 + + P + PV++ G I+ T + YI I G VL+ Sbjct: 338 WNLSKGSKYKPTIHITPVSLSGVTISKVTGFHGKYI-----------SENKIGKGAVVLI 386 Query: 404 KRAG----EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN-PKTGKLVAAHRC 458 R+G ++ + + + + R++ K + C Sbjct: 387 TRSGEVIPHIVSVISPAAKQDVLLPSNGVWKGVDIYYDGAEEPREITVKKMVHFFTSLGC 446 Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518 G + +L + + ++ F Sbjct: 447 LGLKTMTVGRLYDAGYRTVEAIVGADTKKLVLINGFRMVAQKLLPSMWVNVAKATPHELM 506 Query: 519 TSTTKIENILGFGDVSVTNLYD---------SINKRRNISLERFIFSLGIRHVGAEIARS 569 + +G + + + + L + + +A+S Sbjct: 507 AALNAFGEGIGLRKIQNIDCSKPEALEVIGMTKKTVETRIWPIWNDVLARVNALSRMAKS 566 Query: 570 LAKY---------------YLSYQN-----------FAQEINNIIAHNNDDWLSLIRVPL 603 + + SY + + A + + Sbjct: 567 QLRKQETGSCEPEEDDDYNFGSYHPCHMPCQSSNKIWECRSRSPSAAGSASPCRPTKRRD 626 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 +++ + + CA E + ++ VFT + + Sbjct: 627 ----------DWFDSSESSCATE-------TCVVESPPKKRPPMQGYVFVFT----RFRD 665 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDN-------PGSKLEKAQQLGVKIMNEEQFLF 716 + +T LG V +++ +I + G KL+ A + + + Sbjct: 666 KDLERQITALGGKVLNNVNQNVTHVITKEKGPYKKPYTG-KLKFALDNNLFVWSLVHLKS 724 Query: 717 LLQQYNTTLR 726 ++ L+ Sbjct: 725 IVADEQEKLK 734 >gi|330995011|ref|ZP_08318931.1| DNA ligase [Gluconacetobacter sp. SXCC-1] gi|329757924|gb|EGG74448.1| DNA ligase [Gluconacetobacter sp. SXCC-1] Length = 239 Score = 160 bits (404), Expect = 8e-37, Method: Composition-based stats. Identities = 77/212 (36%), Positives = 111/212 (52%), Gaps = 3/212 (1%) Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--SIFFTLEPKIDG 136 G + H +P LSL+ +++ E+ FI+RI RF ++ + F EPKIDG Sbjct: 2 GAPATGPFRRHRHMVPMLSLDNVFSREEFEGFISRIARFLGLDEEQARQLSFVAEPKIDG 61 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I++ YE G+FV RGDG GEDV+A +R + IP L P++IE+RGEV++SK Sbjct: 62 LSISLTYEHGRFVRGTTRGDGTEGEDVTANLRTLRDIPDQLPAPCPDVIEIRGEVFLSKQ 121 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQY 255 FL LN G +P+ANPRNAA+G LR+L+ R L+ F + G S A + Sbjct: 122 AFLELNAAQERAGDRPFANPRNAAAGSLRQLDAGITARRPLSLFAYAAGYCSAPLAATHH 181 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE 287 L ++ GF VN Q ++ Sbjct: 182 GYLAQLAAWGFRVNPLSTQVKDAGAAEAFMER 213 >gi|257096605|sp|A9R666|LIGB_YERPG RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B Length = 567 Score = 160 bits (404), Expect = 8e-37, Method: Composition-based stats. Identities = 103/624 (16%), Positives = 198/624 (31%), Gaps = 93/624 (14%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 E+++LEQ+++ Y+Q + D YD L+ + P+ Sbjct: 37 IAVEINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSC------RGLPD---- 86 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 K + + H + L+K+ + L +++ W ++PK+DG Sbjct: 87 KTESQPIPGKGQFLHPVAHTGLKKLKDETALTRWMAGRKNLW-----------VQPKVDG 135 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 +T+ Y GK V RG+G G++ + I IP+ ++ P ++ ++GE+++ + Sbjct: 136 VAVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIANA-PALLTLQGELFLLMD 194 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 G + A + ++ + G E A Q Sbjct: 195 GHQQAKS----GGVNARSTVAGALMRKSPSPLLAQVGVFIWAWPDGPTTMKEKVALLQVM 250 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 PV + + ++ LP+ DG+V + +E + Sbjct: 251 GFPFTAKYSEPVMSHLDVVQ---------WRQFWFQAPLPFVTDGVVVRQEEEPAGRYWQ 301 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 W ++ K+ Q + DI +GRTG T V + P+ I I + Sbjct: 302 ATPGQ--WSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKIDDKWIRRVNI--- 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DI GD + + AG IP++ +++ + Sbjct: 357 --------GSVTRWKQWDIAPGDHITLALAGHGIPRLDNVV--------WRVHQRNTITA 400 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 L+ C Q L RL +I G+G Sbjct: 401 PNWDKFHQLS---------CFQRLPHGCEPQFLSRLIWLSGPGGLDIGGIGGGFWQELIH 451 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 E I L Q S I G G+ +Y + + R++ + Sbjct: 452 HE----LINDLVGWLLLTPEQIAS------IPGIGNARAEKIYQQFQRAKQQPFSRWLLA 501 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LG V + A+ ++ + +W ++ +G + A+ I F+ Sbjct: 502 LGFPQVVSVDAQ---------------WQVVLRRSLSEWATMA---GIGQMRAKQIKHFW 543 Query: 617 QNPRNICAVEALLKEVSPSIGRHE 640 +P + L + E Sbjct: 544 DHPDVQALADFLSTQKVVGFELTE 567 >gi|162420613|ref|YP_001604687.1| NAD-dependent DNA ligase LigB [Yersinia pestis Angola] gi|162353428|gb|ABX87376.1| DNA ligase, NAD-dependent [Yersinia pestis Angola] Length = 558 Score = 160 bits (404), Expect = 8e-37, Method: Composition-based stats. Identities = 103/624 (16%), Positives = 198/624 (31%), Gaps = 93/624 (14%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 E+++LEQ+++ Y+Q + D YD L+ + P+ Sbjct: 28 IAVEINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSC------RGLPD---- 77 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 K + + H + L+K+ + L +++ W ++PK+DG Sbjct: 78 KTESQPIPGKGQFLHPVAHTGLKKLKDETALTRWMAGRKNLW-----------VQPKVDG 126 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 +T+ Y GK V RG+G G++ + I IP+ ++ P ++ ++GE+++ + Sbjct: 127 VAVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIANA-PALLTLQGELFLLMD 185 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 G + A + ++ + G E A Q Sbjct: 186 GHQQAKS----GGVNARSTVAGALMRKSPSPLLAQVGVFIWAWPDGPTTMKEKVALLQVM 241 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 PV + + ++ LP+ DG+V + +E + Sbjct: 242 GFPFTAKYSEPVMSHLDVVQ---------WRQFWFQAPLPFVTDGVVVRQEEEPAGRYWQ 292 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 W ++ K+ Q + DI +GRTG T V + P+ I I + Sbjct: 293 ATPGQ--WSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKIDDKWIRRVNI--- 347 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DI GD + + AG IP++ +++ + Sbjct: 348 --------GSVTRWKQWDIAPGDHITLALAGHGIPRLDNVV--------WRVHQRNTITA 391 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 L+ C Q L RL +I G+G Sbjct: 392 PNWDKFHQLS---------CFQRLPHGCEPQFLSRLIWLSGPGGLDIGGIGGGFWQELIH 442 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 E I L Q S I G G+ +Y + + R++ + Sbjct: 443 HE----LINDLVGWLLLTPEQIAS------IPGIGNARAEKIYQQFQRAKQQPFSRWLLA 492 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LG V + A+ ++ + +W ++ +G + A+ I F+ Sbjct: 493 LGFPQVVSVDAQ---------------WQVVLRRSLSEWATMA---GIGQMRAKQIKHFW 534 Query: 617 QNPRNICAVEALLKEVSPSIGRHE 640 +P + L + E Sbjct: 535 DHPDVQALADFLSTQKVVGFELTE 558 >gi|165926076|ref|ZP_02221908.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. F1991016] gi|165936320|ref|ZP_02224889.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. IP275] gi|166011507|ref|ZP_02232405.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. E1979001] gi|165915934|gb|EDR34542.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. IP275] gi|165921936|gb|EDR39113.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. F1991016] gi|165989653|gb|EDR41954.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. E1979001] gi|262360227|gb|ACY56948.1| DNA ligase, NAD-dependent [Yersinia pestis D106004] gi|262364173|gb|ACY60730.1| DNA ligase, NAD-dependent [Yersinia pestis D182038] Length = 558 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 103/624 (16%), Positives = 197/624 (31%), Gaps = 93/624 (14%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 E+++LEQ+++ Y+Q + D YD L+ + P+ Sbjct: 28 IAVEINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSC------RGLPD---- 77 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 K + + H + L+K+ + L +++ W ++PK+DG Sbjct: 78 KTESQPIPGKGQFLHPVAHTGLKKLKDETALTRWMAGRKNLW-----------VQPKVDG 126 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 +T+ Y GK V RG+G G++ + I IP+ ++ P ++ ++GE+++ + Sbjct: 127 VAVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIANA-PALLTLQGELFLLMD 185 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 G + A + ++ + G E A Q Sbjct: 186 GHQQAKS----GGVNARSTVAGALMRKSPSPLLAQVGVFIWAWPDGPTTMKEKVALLQVM 241 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 PV + + ++ LP+ DG+V + +E + Sbjct: 242 GFPFTAKYSEPVMSHLDVVQ---------WRQFWFQAPLPFVTDGVVVRQEEEPAGRYWQ 292 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 W ++ K+ Q + DI +GRTG T V + P+ I I + Sbjct: 293 ATPGQ--WSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKIDDKWIRRVNI--- 347 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DI GD + + AG IP++ +++ + Sbjct: 348 --------GSVTRWKQWDIAPGDHITLALAGHGIPRLDNVV--------WRVHQRNTITA 391 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 L+ C Q L RL +I G+G Sbjct: 392 PNWDKFHQLS---------CFQRLPHGCEPQFLSRLIWLSGPGGLDIGGIGGGFWQELIH 442 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 E I L Q S I G G+ +Y + + R++ + Sbjct: 443 HE----LINDLVGWLLLTPEQIAS------IPGIGNARAEKIYQQFQRAKQQPFSRWLLA 492 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LG V + A+ ++ + +W ++ +G + A+ I F Sbjct: 493 LGFPQVVSVDAQ---------------WQVVLRRSLSEWATMA---GIGQMRAKQIKHFL 534 Query: 617 QNPRNICAVEALLKEVSPSIGRHE 640 +P + L + E Sbjct: 535 DHPDVQALADFLSTQKVVGFELTE 558 >gi|153948758|ref|YP_001399043.1| NAD-dependent DNA ligase LigB [Yersinia pseudotuberculosis IP 31758] gi|166990677|sp|A7FCR5|LIGB_YERP3 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|152960253|gb|ABS47714.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis IP 31758] Length = 567 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 103/624 (16%), Positives = 197/624 (31%), Gaps = 93/624 (14%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 E+++LEQ+++ Y+Q + D YD L+ + P+ Sbjct: 37 IAVEINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSC------RGLPD---- 86 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 K + + H + L+K+ + L +++ W ++PK+DG Sbjct: 87 KTESQPIPGKGQFLHPVAHTGLKKLKDETALTRWMAGRKNLW-----------VQPKVDG 135 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 +T+ Y GK V RG+G G++ + I IP+ ++ P ++ ++GE+++ + Sbjct: 136 VAVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIANA-PALLTLQGELFLLMD 194 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 G + A + ++ + G E A Q Sbjct: 195 GHQQAKS----GGVNARSTVAGALMRKSPSPLLAQVGVFIWAWPDGPTTMKEKVALLQVM 250 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 PV + + ++ LP+ DG+V + +E + Sbjct: 251 GFPFTAKYSEPVMSHLDVVQ---------WRQFWFQAPLPFVTDGVVVRQEEEPAGRYWQ 301 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 W ++ K+ Q + DI +GRTG T V + P+ I I + Sbjct: 302 ATPGQ--WSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKIDDKWIRRVNI--- 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DI GD + + AG IP++ +++ + Sbjct: 357 --------GSVTRWKQWDIAPGDHITLALAGHGIPRLDNVV--------WRVHQRNTITA 400 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 L+ C Q L RL +I G+G Sbjct: 401 PNWDKFHQLS---------CFQRLPHGCEPQFLSRLIWLSGPGGLDIGGIGGGFWQELIH 451 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 E I L Q S I G G+ +Y + + R++ + Sbjct: 452 HE----LINDLVGWLLLTPEQIAS------IPGIGNARAEKIYQQFQRAKQQPFSRWLLA 501 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LG V + A+ ++ + +W ++ +G + A+ I F Sbjct: 502 LGFPQVVSVDAQ---------------WQVVLRRSLSEWATMA---GIGQMRAKQIKHFL 543 Query: 617 QNPRNICAVEALLKEVSPSIGRHE 640 +P + L + E Sbjct: 544 DHPDVQALADFLSTQKVVGFELTE 567 >gi|51594396|ref|YP_068587.1| NAD-dependent DNA ligase LigB [Yersinia pseudotuberculosis IP 32953] gi|186893383|ref|YP_001870495.1| NAD-dependent DNA ligase LigB [Yersinia pseudotuberculosis PB1/+] gi|81640832|sp|Q66GE4|LIGB_YERPS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|226737628|sp|B2JYM4|LIGB_YERPB RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|51587678|emb|CAH19278.1| putative DNA ligase [Yersinia pseudotuberculosis IP 32953] gi|186696409|gb|ACC87038.1| NAD-dependent DNA ligase adenylation [Yersinia pseudotuberculosis PB1/+] Length = 567 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 103/624 (16%), Positives = 197/624 (31%), Gaps = 93/624 (14%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 E+++LEQ+++ Y+Q + D YD L+ + P+ Sbjct: 37 IAVEINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSC------RGLPD---- 86 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 K + + H + L+K+ + L +++ W ++PK+DG Sbjct: 87 KTESQPIPGKGQFLHPVAHTGLKKLKDETALTRWMAGRKNLW-----------VQPKVDG 135 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 +T+ Y GK V RG+G G++ + I IP+ ++ P ++ ++GE+++ + Sbjct: 136 VAVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIANA-PALLTLQGELFLLMD 194 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 G + A + ++ + G E A Q Sbjct: 195 GHQQAKS----GGVNARSTVAGALMRKSPSPLLAQVGVFIWAWPDGPTTMKEKVALLQVM 250 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 PV + + ++ LP+ DG+V + +E + Sbjct: 251 GFPFTAKYSEPVMSHLDVVQ---------WRQFWFQAPLPFVTDGVVVRQEEEPAGRYWQ 301 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 W ++ K+ Q + DI +GRTG T V + P+ I I + Sbjct: 302 ATPGQ--WSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKIDDKWIRRVNI--- 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DI GD + + AG IP++ +++ + Sbjct: 357 --------GSVTRWKQWDIAPGDHITLALAGHGIPRLDNVV--------WRVHQRNTITA 400 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 L+ C Q L RL +I G+G Sbjct: 401 PNWDKFHQLS---------CFQRLPHGCEPQFLSRLIWLSGPGGLDIGGIGGGFWQKLIH 451 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 E I L Q S I G G+ +Y + + R++ + Sbjct: 452 HE----LINDLVGWLLLTPEQIAS------IPGIGNARAEKIYQQFQRAKQQPFSRWLLA 501 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LG V + A+ ++ + +W ++ +G + A+ I F Sbjct: 502 LGFPQVVSVDAQ---------------WQVVLRRSLSEWATMA---GIGQMRAKQIKHFL 543 Query: 617 QNPRNICAVEALLKEVSPSIGRHE 640 +P + L + E Sbjct: 544 DHPDVQALADFLSTQKVVGFELTE 567 >gi|22124020|ref|NP_667443.1| NAD-dependent DNA ligase LigB [Yersinia pestis KIM 10] gi|45439907|ref|NP_991446.1| NAD-dependent DNA ligase LigB [Yersinia pestis biovar Microtus str. 91001] gi|108813969|ref|YP_649736.1| NAD-dependent DNA ligase LigB [Yersinia pestis Nepal516] gi|145601104|ref|YP_001165180.1| NAD-dependent DNA ligase LigB [Yersinia pestis Pestoides F] gi|150260895|ref|ZP_01917623.1| putative DNA ligase [Yersinia pestis CA88-4125] gi|166213764|ref|ZP_02239799.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. B42003004] gi|167419052|ref|ZP_02310805.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426671|ref|ZP_02318424.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468217|ref|ZP_02332921.1| NAD-dependent DNA ligase LigB [Yersinia pestis FV-1] gi|170026382|ref|YP_001722887.1| NAD-dependent DNA ligase LigB [Yersinia pseudotuberculosis YPIII] gi|218927262|ref|YP_002345137.1| NAD-dependent DNA ligase LigB [Yersinia pestis CO92] gi|229836152|ref|ZP_04456320.1| putative DNA ligase [Yersinia pestis Pestoides A] gi|229839890|ref|ZP_04460049.1| putative DNA ligase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229841972|ref|ZP_04462127.1| putative DNA ligase [Yersinia pestis biovar Orientalis str. India 195] gi|229904499|ref|ZP_04519610.1| putative DNA ligase [Yersinia pestis Nepal516] gi|270488499|ref|ZP_06205573.1| NAD-dependent DNA ligase OB-fold domain protein [Yersinia pestis KIM D27] gi|294502148|ref|YP_003566210.1| DNA ligase [Yersinia pestis Z176003] gi|123073072|sp|Q1CCZ4|LIGB_YERPN RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|123777855|sp|Q7CLB2|LIGB_YERPE RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|166226366|sp|A4TSE5|LIGB_YERPP RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|226737629|sp|B1JQZ3|LIGB_YERPY RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|21956763|gb|AAM83694.1|AE013610_6 putative enzyme [Yersinia pestis KIM 10] gi|45434762|gb|AAS60323.1| putative DNA ligase [Yersinia pestis biovar Microtus str. 91001] gi|108777617|gb|ABG20136.1| DNA ligase [Yersinia pestis Nepal516] gi|115345873|emb|CAL18731.1| putative DNA ligase [Yersinia pestis CO92] gi|145212800|gb|ABP42207.1| DNA ligase [Yersinia pestis Pestoides F] gi|149290303|gb|EDM40380.1| putative DNA ligase [Yersinia pestis CA88-4125] gi|166205166|gb|EDR49646.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. B42003004] gi|166963046|gb|EDR59067.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167054360|gb|EDR64177.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752916|gb|ACA70434.1| DNA ligase (NAD(+)) [Yersinia pseudotuberculosis YPIII] gi|229678617|gb|EEO74722.1| putative DNA ligase [Yersinia pestis Nepal516] gi|229690282|gb|EEO82336.1| putative DNA ligase [Yersinia pestis biovar Orientalis str. India 195] gi|229696256|gb|EEO86303.1| putative DNA ligase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706600|gb|EEO92606.1| putative DNA ligase [Yersinia pestis Pestoides A] gi|270337003|gb|EFA47780.1| NAD-dependent DNA ligase OB-fold domain protein [Yersinia pestis KIM D27] gi|294352607|gb|ADE62948.1| DNA ligase [Yersinia pestis Z176003] gi|320013395|gb|ADV96966.1| putative DNA ligase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 567 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 103/624 (16%), Positives = 197/624 (31%), Gaps = 93/624 (14%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 E+++LEQ+++ Y+Q + D YD L+ + P+ Sbjct: 37 IAVEINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSC------RGLPD---- 86 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 K + + H + L+K+ + L +++ W ++PK+DG Sbjct: 87 KTESQPIPGKGQFLHPVAHTGLKKLKDETALTRWMAGRKNLW-----------VQPKVDG 135 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 +T+ Y GK V RG+G G++ + I IP+ ++ P ++ ++GE+++ + Sbjct: 136 VAVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIANA-PALLTLQGELFLLMD 194 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 G + A + ++ + G E A Q Sbjct: 195 GHQQAKS----GGVNARSTVAGALMRKSPSPLLAQVGVFIWAWPDGPTTMKEKVALLQVM 250 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 PV + + ++ LP+ DG+V + +E + Sbjct: 251 GFPFTAKYSEPVMSHLDVVQ---------WRQFWFQAPLPFVTDGVVVRQEEEPAGRYWQ 301 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 W ++ K+ Q + DI +GRTG T V + P+ I I + Sbjct: 302 ATPGQ--WSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKIDDKWIRRVNI--- 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DI GD + + AG IP++ +++ + Sbjct: 357 --------GSVTRWKQWDIAPGDHITLALAGHGIPRLDNVV--------WRVHQRNTITA 400 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 L+ C Q L RL +I G+G Sbjct: 401 PNWDKFHQLS---------CFQRLPHGCEPQFLSRLIWLSGPGGLDIGGIGGGFWQELIH 451 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 E I L Q S I G G+ +Y + + R++ + Sbjct: 452 HE----LINDLVGWLLLTPEQIAS------IPGIGNARAEKIYQQFQRAKQQPFSRWLLA 501 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LG V + A+ ++ + +W ++ +G + A+ I F Sbjct: 502 LGFPQVVSVDAQ---------------WQVVLRRSLSEWATMA---GIGQMRAKQIKHFL 543 Query: 617 QNPRNICAVEALLKEVSPSIGRHE 640 +P + L + E Sbjct: 544 DHPDVQALADFLSTQKVVGFELTE 567 >gi|290511785|ref|ZP_06551153.1| DNA ligase (NAD+) [Klebsiella sp. 1_1_55] gi|289775575|gb|EFD83575.1| DNA ligase (NAD+) [Klebsiella sp. 1_1_55] Length = 559 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 109/612 (17%), Positives = 205/612 (33%), Gaps = 91/612 (14%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+E+S L Q+I + Y++ + D YD L R FP A ED + P Sbjct: 30 RQEISRLHQQIVAWKEDYWRQGASEVSDEVYDQLTLRLAQWRQCFPG-ATPEDDDLP--- 85 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 H + + K+ + + ++ N ++PK+DG Sbjct: 86 ---PPTGDT---RHPVAHTGVRKLADEASVAHWMK-----------NKADLWVQPKVDGV 128 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +T+ Y +G V A RGDG GE +A R IP + ++ + ++GE+++ + Sbjct: 129 AVTLVYRQGSLVQAISRGDGLRGEAWTARARQIPALAKLTTGE-LANSVLQGELFLRREG 187 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256 + N R +G++ R + L+ F+ + Q Sbjct: 188 --------HIQQQAGGMNARAKVAGLMMRADAAAAPLSQLDVFIWAWPDGPSDMRRRQQL 239 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + Q + V + + S LP+ DG++ + + Sbjct: 240 LAQAGFGYSGQYTHSVTRVEQVAQWRQRWYR-----SPLPFVSDGVIVREGHEPPGRVWS 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 W+ + K+ + I GR+G L VA+LEP + + + Sbjct: 295 PGKGE--WLAAWKYPPASQVMEVRAIHFSTGRSGRLNVVAQLEPQRLDDKRVQRVNV--- 349 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DI VGD++ + AG+ IP++ ++ Sbjct: 350 --------GSVARWQALDIGVGDQLQISLAGQGIPRIDAVVWR----------------- 384 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 + P K A CS Q L RL S+ A +++G+G+ ++ Sbjct: 385 --TAERHKPTPPAAKFNALTCYFATPECSEQFLSRLIWLSSKSALDVDGVGEH----LWR 438 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + + L Q + + G +L+ + R R++ + Sbjct: 439 AIQQQNPMTHIFSWLALTVEQLQA------VPGISAARGQHLWHQFDLVRKRPFIRWVLA 492 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 +G+ +A+ E N +P VG+I A+ +V F Sbjct: 493 MGLPVPQGALAQL-------------ESENWHLLAAKSEAQWRALPGVGEIRARQLVAFL 539 Query: 617 QNPRNICAVEAL 628 +P + + L Sbjct: 540 HHPDVVALAQWL 551 >gi|126669208|ref|ZP_01740125.1| hypothetical protein MELB17_00020 [Marinobacter sp. ELB17] gi|126626327|gb|EAZ97005.1| hypothetical protein MELB17_00020 [Marinobacter sp. ELB17] Length = 490 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 112/553 (20%), Positives = 196/553 (35%), Gaps = 90/553 (16%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 +E+ + +D Y II DS+YDAL L + E Sbjct: 19 RQIEESLERANDAYRNTDDSIISDSDYDALIDELARRDPGHALLTE----------VESE 68 Query: 82 MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-DNSIFFTLEPKIDGTMIT 140 + KV H IP LS EK+ +L ++ R+ Q + ++ K+DG Sbjct: 69 ADFGAGKVRHQIPMLSTEKVKTDSELSAWVRRVESAAQNIGIRTPVLLSVTAKLDGMAGR 128 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + + G A RGDG +G +++ + + GE+ + ++ F Sbjct: 129 L--KDGVL---ASRGDGLTGNNITHILPKLVV-----------HGVGDGELVMIQSYFDE 172 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260 + + +PRN +G + P + Sbjct: 173 HLS-------EEFKHPRNVVTGAVGADTPRPA--------------AMKALNDHSIHFVS 211 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 L + I + + PY DGLV V+ L+K+LG Sbjct: 212 FTTLTRIDSRTDTIVAQLPEI------REYLLGNTPYPTDGLVLAVESPELRKELGSTGH 265 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 WM++ K + A+T ++ + QIG+TG LTPV +L+ V + GA+I N T HN ++ Sbjct: 266 HHNWMVAAKTVGETATTAVVGVQWQIGKTGRLTPVIQLKKVTLSGAVIANVTGHNAGKVE 325 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 + I VG + R+GE+IP +V P+ CP C Sbjct: 326 EM-----------GIDVGAMATITRSGEIIPFLVSATPAPNGAS-----LPTHCPACTEH 369 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 + R + C ++ RL HF +I+ G D + Sbjct: 370 LKRRGD---------FLVCINNECEGRRHARLHHFF-NIIGSIDLFGPVACDKLIAAG-- 417 Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560 +R ++F + + + G G + K R + R + ++GI Sbjct: 418 ---VRSIQEVFAITAAEFEAMGF-----GPGQSANLVAELEAAKTRPVDDFRVLAAMGIS 469 Query: 561 HVGAEIARSLAKY 573 ++G ++ L ++ Sbjct: 470 NLGRGDSKKLLRH 482 >gi|317050124|ref|YP_004117772.1| DNA ligase (NAD(+)) [Pantoea sp. At-9b] gi|316951741|gb|ADU71216.1| DNA ligase (NAD(+)) [Pantoea sp. At-9b] Length = 589 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 110/627 (17%), Positives = 204/627 (32%), Gaps = 99/627 (15%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF-PD---LARS 68 S +A +E++ L ++ + DD YY+ + D++YD+L +R H F PD A Sbjct: 26 SPIRAGQEIAQLTTQLRHWDDAYYRQGLNPVSDADYDSLSQRLQQWQHCFTPDQSAYAAQ 85 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 +G + H + + K+ + + +++ Sbjct: 86 PTTDGSTH--------------HPVAHTGVRKLRDKRAVMEWMQ-----------GKADL 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG IT+ Y +G RGDG GE+ A IP IP+ I + Sbjct: 121 WVQPKVDGVAITLVYRQGHLASMLSRGDGWRGEEWRAKASLIPAIPQQ-------IATTQ 173 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 EV + FL + D A A + A + + R P + + G + Sbjct: 174 DEVVLQGELFLQMTDHQQAQDGGKNARAQVAGAMMRRDDTPLLAQLGVFIWAWPDGPVAL 233 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q + N + S+ + + LP+ DG+V Sbjct: 234 SERLAQLSRWGFG-----LTARWSERVNNEDEVASWRDRW--FQGKLPFVTDGIVIHQSP 286 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W + K+ + S+ + + IGRTG + V L PV + + Sbjct: 287 VRRGRDWQPGQGE--WSAAWKYQPAEVSSEVRSVAFNIGRTGKIAVVLNLIPVQLDDKTV 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + D+ GD+V + AG+ IP+V +I D Sbjct: 345 RRVNI-----------GSLRRWRELDVIAGDQVTLALAGQGIPRVERVIWRVAQRD---- 389 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF-NIEGLG 487 + C Q ++S + +I G+ Sbjct: 390 ---------------YPDAPQSDDFNQLSCLTFSPPCRAQFLSRLSWLSEKSVLDISGIQ 434 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + S +I L Q I + G ++ N+ R Sbjct: 435 RSTWQRLLDS----GTISHLFSWLALTPEQ------IAQVAGISPARAQQIWHRFNQTRQ 484 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 L R++ +LG+ + +++ + + + + W L P +G Sbjct: 485 QPLRRWVMALGL-PIPRAALQAMPD---------SQWQQLQLRSVESWQQL---PGIGGT 531 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP 634 +AQ IV + + + L ++ P Sbjct: 532 LAQRIVTMLHDHQVQQLITFLQQQAIP 558 >gi|189426842|ref|YP_001949941.1| NAD-dependent DNA ligase [Ralstonia phage RSL1] gi|189233154|dbj|BAG41511.1| NAD-dependent DNA ligase [Ralstonia phage RSL1] Length = 625 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 118/710 (16%), Positives = 232/710 (32%), Gaps = 120/710 (16%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + A ++ +A+K YY+ I+ D+E+DAL+ + + +L ++ Sbjct: 3 VTAQNLNKAKKLYKQ-------ARVAYYEK-AEIMTDAEFDALEDSIRRLDPKWDELQKT 54 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 K+ E+ +V S KI+ + ++ K + + Sbjct: 55 GT------KV--EVKNKKQEVKLLEFMPSKNKIYPE--------HVAKYAAKHASVEV-W 97 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIE 186 + K+DGT + + Y G+ RGDG G+D+S + + I + + ++ Sbjct: 98 NVSHKLDGTSLQLAYRGGRPWKLITRGDGALGKDISFFLPHLVKIGMIPDHIKTDALVVV 157 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246 R E + F Y N R A+G+ R + ++ V + Sbjct: 158 FRCEGIMPVAVFEKKWA-------GKYDNARQLANGVFNRQDMHPALADVHMVVLSV--- 207 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + Q E + + GF R + R Y++DGL+ Sbjct: 208 ---YGMKQGEGIMYAKRQGF-HVVPTRMLKGRLDAEVLTRLLNKEREASIYEMDGLILV- 262 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQA--STRLLDIDIQIGRTGILTPVARLEPVNIG 364 S + P+ + + KF +++ + + Q R P ++P + Sbjct: 263 --PSPRIMSYTSPDRPKDITAFKFNDEENAAEVPVESVVWQKTRLHRWQPKITIKPTFMD 320 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TN T HN ++K R I G V V R+G VIPK+V ++ + Sbjct: 321 GVMVTNVTAHNPAWMK-----------ERGIGPGAIVKVLRSGGVIPKIVGVVKKGKFQP 369 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + ++ H L IE Sbjct: 370 PPGPYV-----EDGRLFRMTEGDASTEVRGIHHFMTTLG-------------------IE 405 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 L + + ++ D L + I + + + Sbjct: 406 LLASKTITKLYEEGF-----TTVYDYIDLAINGDEGRLQTAGIGVKMSQKIQAELERVLG 460 Query: 545 RRNISLERFIFSLGIRHVGAEIARS--LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 I+L + + G G + L +S + + + + L +V Sbjct: 461 S-TINLRLLMVASGCFRDGIGRRKLEALEAAGISMRFLLKSSDFALRG------ELSKVK 513 Query: 603 LVGDIIAQAIVE-------FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655 DI +A+++ ++ V LL EV S+ + +K V+ ++ + V Sbjct: 514 GFSDITIEAVIDGVNAFRKWFDE------VRELL-EVDGSLPKAKKVVTGKLTGQ-FV-- 563 Query: 656 GTLQKIQRHKAQEYVTQLGAVVS--AILSRKTDIIIVGD--NPGSKLEKA 701 + + ++ V G + KT I++ SK+EKA Sbjct: 564 -SWTGYRNKDEEQKVEAWGGTIVPFGS---KTTILLYSPSGKTSSKVEKA 609 >gi|300714635|ref|YP_003739438.1| NAD-dependent DNA ligase [Erwinia billingiae Eb661] gi|299060471|emb|CAX57578.1| Putative NAD-dependent DNA ligase [Erwinia billingiae Eb661] Length = 563 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 131/635 (20%), Positives = 229/635 (36%), Gaps = 92/635 (14%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 A + +A +E+++LE ++S DD YY+ + + D YDAL + + H F Sbjct: 18 ACPAWTPARAEQEMNALENQLSAWDDAYYRAGEQKVPDDRYDALALKYQSWQHCF----- 72 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P L + KV H + + ++K+ + + L +++ Sbjct: 73 --APGSDLRQ---PALARNGKVLHPVAHVGVKKVADQQALSRWMA-----------GKDA 116 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 ++PK+DG +T+ Y++GK RG+G GED + R IP IP+ ++L + + + Sbjct: 117 LWVQPKVDGVAVTLHYKRGKLAQVISRGNGLQGEDWTEKARFIPDIPQQIALG-SDSLVL 175 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247 +GE+Y+ D N R +G +RR P+D L F+ Sbjct: 176 QGELYLKMTDHQQTL--------LGGLNARATVAGAMRRNAPSDTLNRLGIFIWAWPDG- 226 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E ++++ GFP+ + V+ + E + +V+ Sbjct: 227 ---PATLRERIERLSEAGFPMMGEWSKPVRSAEEVAGWRERWFAQPLPFVTDGVVVHSQP 283 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 Q GE A W ++ K+ +T + +D IGRTG ++ V L PV + Sbjct: 284 VKGAYWQPGENA----WSVAWKYPPATVTTEVRSVDFPIGRTGKISTVLNLVPVKLDDKQ 339 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ + DI GD+V V AG+ IP++ +++ R D Sbjct: 340 VSRVNV-----------GSFNRWREADIVAGDQVAVSLAGQGIPRLDEVVW--RVADRTL 386 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGL 486 L C C Q L RL R A + G Sbjct: 387 -----------------PELPDATLFHPLSCFSLTPVCRQQLLARLVWLSGRAALTLSGA 429 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 + +S TL Q + I G LY N+ Sbjct: 430 SESTWQRIMQSGQLTHL----FSWLTLTAEQLS------QIAGITPARANQLYHQFNQTH 479 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +R++ +LG+ V + +L ++++ DW L P +G+ Sbjct: 480 QQPFKRWVRALGV-PVPNKALDALDD---------DNWQSLLSRKVADWQRL---PEIGE 526 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 A IV F Q+P + L + SI + Sbjct: 527 RRAGQIVTFLQHPDVQALIAFLSTHLQQSISVQHE 561 >gi|317494707|ref|ZP_07953119.1| NAD-dependent DNA ligase adenylation domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917309|gb|EFV38656.1| NAD-dependent DNA ligase adenylation domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 571 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 107/556 (19%), Positives = 197/556 (35%), Gaps = 75/556 (13%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 P + E+A E+S+L+Q+++ D+ Y+ + D YD + +R + F L Sbjct: 18 PPCPDWAAERATHEISALQQQMAKWDEAYFLQGSSPVSDEIYDQMAQRLKSWKQCF--LT 75 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 S N L E ++H + L K+ N +R ++ Sbjct: 76 NSSSSNSAL-----EPTSPRNTLSHPVAHTGLNKLENEAAVRDWLK-----------GKE 119 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 ++PKIDG +T+ Y+ G+ RGDG G+D + +I IP+ + + Sbjct: 120 SVWIQPKIDGVAVTLHYQHGRLKSMISRGDGLIGQDWTKASASISAIPKKIPDD-EAYTV 178 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246 ++GE+ FL + D A + A + L+ L+ + F Sbjct: 179 LQGEL------FLKVTDHQQKRDGGINARSKVAGAMRLKFLSSETANQLEIF-----IWG 227 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + L K+ LGFP+ A T + + LP+ DG+V + Sbjct: 228 YPDGPAEMPQRLNKLARLGFPLAEQYTHAVTDV-VDVEKWREYWYQQPLPFVTDGIVLHM 286 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + R P W + K+ K + T + D+ IGR+G + V LEPV + Sbjct: 287 AQ--QPASVLWRPSPPGWAAAWKYPLKSSVTEVKDVQFSIGRSGRINAVLLLEPVTVDDK 344 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ +L + D++ D+V V AG+ P + +I Sbjct: 345 RVSRVSL-----------GSVMRWQQWDVQPHDQVSVVLAGQGTPHLEKVIWR------- 386 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 S +N + C A +Q + + I G+ Sbjct: 387 ------------SPERVIVNAPDRGKYHSLSCWH-YAPGCEQQFIARVVWMAQSLGITGV 433 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G+ +S + + D+ L + S G G L +I + + Sbjct: 434 GEAFWRELAQSGELSDL----DDVLALTEHRLVSR-------GMGINRAQRLSAAIERIK 482 Query: 547 NISLERFIFSLGIRHV 562 + ++ +LG+ Sbjct: 483 LVPSGAWLRALGMPST 498 >gi|289679598|ref|ZP_06500488.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae FF5] Length = 245 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 94/231 (40%), Positives = 143/231 (61%), Gaps = 2/231 (0%) Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180 + + + ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP L Sbjct: 14 EGSKVQYSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKG 73 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P+++EVRGEV++SK F LN + +G K +ANPRNAA+G LR+L+ R L F Sbjct: 74 WPDVLEVRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFC 133 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 +GLG+TS A +L+ ++ G PV+ ++ AN ++YY ++ R L Y+I Sbjct: 134 CYGLGQTSAEIADTHIGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEI 193 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350 DG+V+KV+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG Sbjct: 194 DGVVFKVNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTG 244 >gi|152972501|ref|YP_001337647.1| NAD-dependent DNA ligase LigB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|166226364|sp|A6TFP6|LIGB_KLEP7 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|150957350|gb|ABR79380.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 564 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 110/611 (18%), Positives = 206/611 (33%), Gaps = 90/611 (14%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+E S L Q+I + Y++ + D YD L R FP A ED + P Sbjct: 36 RQETSRLHQQIVAWKEAYWRQGASGVSDDVYDQLTLRLAQWRQCFPG-ATPEDDDLP--- 91 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 H + + K+ + + + +++ N ++PK+DG Sbjct: 92 ---PPTGD---ARHPVAHTGVRKLADEDSVARWMK-----------NKSDLWIQPKVDGV 134 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +T+ Y +G+ V A RGDG GE +A R IP + +V++ ++GE+++ ++ Sbjct: 135 AVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALAKVMTGE-LADSVLQGELFLRRDG 193 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 + N R +G++ R + L+ F+ + Q + Sbjct: 194 --------HVQQQTGGMNARAKVAGLMMRADAAAALSQLDVFIWAWPDGPSDMRRRQQLL 245 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 Q + V + + S LP+ DG++ + + Sbjct: 246 AQAGFKYSGQYTHPVSRIEQVAQWRQRWYR-----SPLPFVSDGVIVREGREPPGRVWSP 300 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 W+ + K+ ++ I IGR+G L VA LEP + + + Sbjct: 301 GKGE--WLAAWKYPPASRVMQVRAIRFSIGRSGRLNVVAELEPQRLDDKRVQRVNV---- 354 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 DI VGD++ + AG+ IP+V ++ F + Sbjct: 355 -------GSVSRWQMLDIGVGDQLQISLAGQGIPRVDAVVWRTAERHKPTPPPAKFNALT 407 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 + + Q L RL S+ A N++G+G+ + Sbjct: 408 CYFATPECSE-------------------QFLSRLIWLSSKSALNVDGVGENLWRVIQQQ 448 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + L Q + + G +L+ + R R++ ++ Sbjct: 449 N----PMTHIFSWLALTVEQLQA------VPGISAARGQHLWHQFDLVRKRPFIRWVLAM 498 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI +A+ E N +P VG+I A+ +V F Sbjct: 499 GIPVPQGALAQL-------------ESENWHLLAAKSEAQWRTLPGVGEIRARQLVAFLH 545 Query: 618 NPRNICAVEAL 628 +P + + L Sbjct: 546 HPDVVALAQWL 556 >gi|238897097|ref|YP_002921843.1| NAD-dependent DNA ligase LigB [Klebsiella pneumoniae NTUH-K2044] gi|238549425|dbj|BAH65776.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 565 Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 110/611 (18%), Positives = 205/611 (33%), Gaps = 90/611 (14%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+E S L Q+I + Y++ + D YD L R FP A ED + P Sbjct: 37 RQETSRLHQQIVAWKEAYWRQGASGVSDDVYDQLTLRLAQWRQCFPG-ATPEDDDLP--- 92 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 H + + K+ + + + +++ N ++PK+DG Sbjct: 93 ---PPTGD---ARHPVAHTGVRKLADEDSVARWMK-----------NKSDLWIQPKVDGV 135 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +T+ Y +G+ V A RGDG GE +A R IP + +V++ ++GE+++ ++ Sbjct: 136 AVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALAKVMTGE-LADSVLQGELFLRRDG 194 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 G N R +G++ R + L+ F+ + Q + Sbjct: 195 -----HVQQRAGGM---NARAKVAGLMMRADAAAALSQLDVFIWAWPDGPSDMRRRQQLL 246 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 Q + V + + S LP+ DG++ + + Sbjct: 247 AQAGFKYSGQYTHPVSRIEQVAQWRQRWYR-----SPLPFVSDGVIVREGREPPGRVWSP 301 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 W+ + K+ ++ I GR+G L VA LEP + + + Sbjct: 302 GKGE--WLAAWKYPPASRVMQVRAIRFSTGRSGRLNVVAELEPQRLDDKRVQRVNV---- 355 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 DI VGD++ + AG+ IP+V ++ F + Sbjct: 356 -------GSVSRWQMLDIGVGDQLQISLAGQGIPRVDAVVWRTAERHKPTPPPAKFNALT 408 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 + + Q L RL S+ A N++G+G+ + Sbjct: 409 CYFATPECSE-------------------QFLSRLIWLSSKSALNVDGVGENLWRVIQQQ 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + L Q + + G +L+ + R R++ ++ Sbjct: 450 N----PMTHIFSWLALTVEQLQA------LPGISAARGQHLWHQFDLVRKRPFIRWVLAM 499 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI +A+ E N +P VG+I A+ +V F Sbjct: 500 GIPVPQGALAQL-------------ESENWHLLAAKSEAQWRTLPGVGEIRARQLVAFLH 546 Query: 618 NPRNICAVEAL 628 +P + + L Sbjct: 547 HPDVVALAQWL 557 >gi|325922521|ref|ZP_08184282.1| NAD-dependent DNA ligase [Xanthomonas gardneri ATCC 19865] gi|325546986|gb|EGD18079.1| NAD-dependent DNA ligase [Xanthomonas gardneri ATCC 19865] Length = 590 Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 77/149 (51%), Gaps = 6/149 (4%) Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLV-GDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636 Q A +++ A + +L++ V ++A ++ ++ + P N + + + Sbjct: 441 QQLAAAVDSFDALRSAGADALLQ-AGVPAPVVA-SVQQWLERPENAALASDAQQAMETVL 498 Query: 637 GRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 R + + ++ + +V TGTL + R A++ + LGA V+ +S+KT ++ G+ Sbjct: 499 SRLPEADALQTGPLDGQTVVITGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEE 558 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 GSKL+KAQ LGV+I +E + L L ++ Sbjct: 559 AGSKLDKAQSLGVEIWDEARLLAFLGEHG 587 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 124/432 (28%), Positives = 201/432 (46%), Gaps = 70/432 (16%) Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 ++R GFPV+ V G+++YY + + R LP+DIDG+VYK+D+ + Q+++G + Sbjct: 4 QLREWGFPVSALVEVVQGSDGLLAYYQRIGAARDGLPFDIDGVVYKLDDLAGQREMGFVS 63 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 R+PRW I+HKF ++ ST + I+IQIGRTG TPVARL+PV++ G ++TNATLHN D I Sbjct: 64 RAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNADQI 123 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439 L D+RVGD V+V+RAG+VIP+V ++ ++R P QP+ P+ CP+C S Sbjct: 124 ARL-----------DVRVGDTVIVRRAGDVIPEVAGVVADQRPPGTQPWQMPTQCPVCGS 172 Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 +VR+ A RC+G L C AQ+ E +HFVSR A +++GLG++ ++ S Sbjct: 173 EIVREEGE------AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDS-- 224 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI----- 554 ++ AD++ L Q I + Sbjct: 225 --GVVQGVADLYLLTVDQLLQLRLISTAESPHAFLREAREHLATGAYAQLENTVVSIGVD 282 Query: 555 ----------------------FSLGIRHVGAEIARSLAKYYL----------------- 575 F + + + A +L + Sbjct: 283 LAGEREVPQTWQADLLRAGLPAFDWNRKKIATKWAENLIEAIEKSRDTTLERFLFALGIE 342 Query: 576 -----SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 + + + ++ + W RVP +G +A+++ F P N A++ LL+ Sbjct: 343 HVGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFLDQPGNQQAIDDLLQ 402 Query: 631 EVSPSIGRHEKN 642 H + Sbjct: 403 RGVRIGDAHPPS 414 >gi|329996951|ref|ZP_08302648.1| NAD-dependent DNA ligase OB-fold domain protein [Klebsiella sp. MS 92-3] gi|328539241|gb|EGF65270.1| NAD-dependent DNA ligase OB-fold domain protein [Klebsiella sp. MS 92-3] Length = 564 Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 109/611 (17%), Positives = 205/611 (33%), Gaps = 90/611 (14%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+E S L Q+I + Y++ + D YD L R FP A ED + P Sbjct: 36 RQETSRLHQQIVAWKEAYWRQGASGVSDDVYDQLTLRLAQWRQCFPG-ATPEDDDLP--- 91 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 H + + K+ + + + +++ N ++PK+DG Sbjct: 92 ---PPTGD---ARHPVAHTGVRKLADEDSVARWMK-----------NKSDLWIQPKVDGV 134 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +T+ Y +G+ V A RGDG GE +A R IP + +V++ ++GE+++ ++ Sbjct: 135 AVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALAKVMTGE-LADSVLQGELFLRRDG 193 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 + N R +G++ R + L+ F+ + Q + Sbjct: 194 --------HVQQQAGGMNARAKVAGLMMRADAAAALGQLDVFIWAWPDGPSDMRRRQQLL 245 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 Q + V + + S LP+ DG++ + + Sbjct: 246 AQAGFKYSGQYTHPVSRIEQVAQWRQRWYR-----SPLPFVSDGVIVREGREPPGRVWSP 300 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 W+ + K+ ++ I GR+G L VA LEP + + + Sbjct: 301 GKGE--WLAAWKYPPASRVMQVRAIRFSTGRSGRLNVVAELEPQRLDDKRVQRVNV---- 354 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 DI VGD++ + AG+ IP+V ++ F + Sbjct: 355 -------GSVSRWQMLDIGVGDQLQISLAGQGIPRVDAVVWRTAERHKPTPPPAKFNALT 407 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 + + Q L RL S+ A N++G+G+ + Sbjct: 408 CYFATPECSE-------------------QFLSRLIWLSSKSALNVDGVGENLWRVIQQQ 448 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + L Q + + G +L+ + R R++ ++ Sbjct: 449 N----PMTHIFSWLALTVEQLQA------VPGISAARGQHLWHQFDLVRKRPFIRWVLAM 498 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI +A+ E N +P VG+I A+ +V F Sbjct: 499 GIPVPQGALAQL-------------ESENWHLLAAKSEAQWRTLPGVGEIRARQLVAFLH 545 Query: 618 NPRNICAVEAL 628 +P + + L Sbjct: 546 HPDVVALAQWL 556 >gi|300725264|ref|YP_003714593.1| DNA ligase [Xenorhabdus nematophila ATCC 19061] gi|297631810|emb|CBJ92531.1| DNA ligase [Xenorhabdus nematophila ATCC 19061] Length = 577 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 103/620 (16%), Positives = 201/620 (32%), Gaps = 82/620 (13%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + E+ + E + L+Q+++ D Y Q I D YD L + + Sbjct: 38 TQEKLQHETAHLKQQMAKWDHLYRQQGISEIDDEIYDQLLETLR-LWQRCSEQIPEGTF- 95 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 K H + L K+ + +R+++ + W L+P Sbjct: 96 -------AVPVSQEGKQPHPVQHTGLHKLKEVRGVRQWLQGRTKVW-----------LQP 137 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG +T+ YEKG+ + RG+G G D I +IP L + PE + ++GE+ Sbjct: 138 KIDGVAVTLIYEKGQLMRLISRGNGIEGTDWMDKSPFISSIP-KLIKHAPEHLVLQGEL- 195 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 F A + A + + P + + F + Sbjct: 196 -----FWQQKSHRQFTVGSQGARSKVAGLMMRKTPEPEALRQIGIF-----IWSWPDGPT 245 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 +++ +GFP+ T + LP+ DG+V + + Sbjct: 246 DMVAKSEQLASMGFPLTQQYSHPITHID-DAEKRWTDYFVQPLPFATDGVVLRQEI--EP 302 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 R S W I+ K+ +Q T + D++ IGRTG ++ V LE V + ++ + Sbjct: 303 TGRQWRTGSNSWAIAWKYPLRQQVTTVKDVNFTIGRTGRISVVLMLEKVRLDDRQVSRVS 362 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 + R++ GD++ V AG IPK+ ++ Sbjct: 363 I-----------GSVKRWKQRNVYPGDKITVALAGHGIPKLDKVVWRMVERPVIQLPDEQ 411 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 + V H C + LG++ Sbjct: 412 HYHFLSCLSLNHEGGTGVNDVNEHPCQQQF-----------------IARLTWLGEKLKM 454 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + ++ + L ++E + G G L+ + ++ + Sbjct: 455 KGVGPGTWSLLVKHGM-VTNLTDWLALDQVRLEKVPGIGSKRAELLFSQFRQAKSRPVSL 513 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 + ++G+ + A + + + E+ + H + + I Sbjct: 514 WREAVGLPY---------ANRFTDHIGWPWEVQLLDKHIKGSLTA---------KQREKI 555 Query: 613 VEFYQNPRNICAVEALLKEV 632 + F Q+P AV+ L + Sbjct: 556 LAFLQHPEIKAAVDILDSQG 575 >gi|108809492|ref|YP_653408.1| NAD-dependent DNA ligase LigB [Yersinia pestis Antiqua] gi|167402095|ref|ZP_02307572.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. UG05-0454] gi|123072562|sp|Q1C259|LIGB_YERPA RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|108781405|gb|ABG15463.1| putative DNA ligase [Yersinia pestis Antiqua] gi|167048470|gb|EDR59878.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 567 Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 103/624 (16%), Positives = 197/624 (31%), Gaps = 93/624 (14%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 E+++LEQ+++ Y+Q + D YD L+ + P+ Sbjct: 37 IAVEINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSC------RGLPD---- 86 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 K + + H + L+K+ + L +++ W ++PK+DG Sbjct: 87 KTESQPIPGKGQFLHPVAHSGLKKLKDETALTRWMAGRKNLW-----------VQPKVDG 135 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 +T+ Y GK V RG+G G++ + I IP+ ++ P ++ ++GE+++ + Sbjct: 136 VAVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIANA-PALLTLQGELFLLMD 194 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 G + A + ++ + G E A Q Sbjct: 195 GHQQAKS----GGVNARSTVAGALMRKSPSPLLAQVGVFIWAWPDGPTTMKEKVALLQVM 250 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 PV + + ++ LP+ DG+V + +E + Sbjct: 251 GFPFTAKYSEPVMSHLDVVQ---------WRQFWFQAPLPFVTDGVVVRQEEEPAGRYWQ 301 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 W ++ K+ Q + DI +GRTG T V + P+ I I + Sbjct: 302 ATPGQ--WSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKIDDKWIRRVNI--- 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DI GD + + AG IP++ +++ + Sbjct: 357 --------GSVTRWKQWDIAPGDHITLALAGHGIPRLDNVV--------WRVHQRNTITA 400 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 L+ C Q L RL +I G+G Sbjct: 401 PNWDKFHQLS---------CFQRLPHGCEPQFLSRLIWLSGPGGLDIGGIGGGFWQELIH 451 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 E I L Q S I G G+ +Y + + R++ + Sbjct: 452 HE----LINDLVGWLLLTPEQIAS------IPGIGNARAEKIYQQFQRAKQQPFSRWLLA 501 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LG V + A+ ++ + +W ++ +G + A+ I F Sbjct: 502 LGFPQVVSVDAQ---------------WQVVLRRSLSEWATMA---GIGQMRAKQIKHFL 543 Query: 617 QNPRNICAVEALLKEVSPSIGRHE 640 +P + L + E Sbjct: 544 DHPDVQALADFLSTQKVVGFELTE 567 >gi|262045607|ref|ZP_06018626.1| NAD-dependent DNA ligase adenylation domain protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037033|gb|EEW38285.1| NAD-dependent DNA ligase adenylation domain protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 564 Score = 158 bits (399), Expect = 3e-36, Method: Composition-based stats. Identities = 107/611 (17%), Positives = 204/611 (33%), Gaps = 90/611 (14%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+E S L Q+I + Y++ + D YD L R FP A ED + P Sbjct: 36 RQETSRLHQQIVAWKEAYWRQGASGVSDDVYDQLTLRLAQWRQCFPG-ATPEDDDLP--- 91 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 H + + K+ + + + +++ N ++PK+DG Sbjct: 92 ---PPTGD---ARHPVAHTGVRKLADEDSVARWMK-----------NKSDLWIQPKVDGV 134 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +T+ Y +G+ V A RGDG GE +A R IP + +V++ ++GE+++ ++ Sbjct: 135 AVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALAKVMTGE-LADSVLQGELFLRRDG 193 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 + N R +G++ R + L+ F+ + Q + Sbjct: 194 --------HVQQQAGGMNARAKVAGLMMRADAAAALSQLDVFIWAWPDGPSDMRRRQKLL 245 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 Q + V + + S LP+ DG++ + + Sbjct: 246 AQAGFKYSGQYTHPVSRIEQVAQWRQRWYR-----SPLPFVSDGVIVREGREPPGRVWSP 300 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 W+ + K+ ++ I GR+G L VA LE + + + Sbjct: 301 GKGE--WLAAWKYPPASRVMQVRAIRFSTGRSGRLNVVAELEAQRLDDKRVQRVNV---- 354 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 DI VGD++ + AG+ IP+V ++ F + Sbjct: 355 -------GSVSRWQMLDIGVGDQLQISLAGQGIPRVDAVVWRTAERHKPTPPPAKFNALT 407 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 + + Q L RL S+ A +++G+G+ + Sbjct: 408 CYFATPECSE-------------------QFLSRLIWLSSKSALDVDGVGENLWRVIQQQ 448 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + L Q + + G +L+ + R R++ ++ Sbjct: 449 N----PMTHIFSWLALTVEQLQA------VPGISAARGQHLWHQFDLVRKRPFIRWVLAM 498 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI +A+ E N +P VG+I A+ +V F Sbjct: 499 GIPVPQGALAQL-------------ESENWHLLAAKSEAQWRTLPGVGEIRARQLVAFLH 545 Query: 618 NPRNICAVEAL 628 +P + + L Sbjct: 546 HPDVVALAQWL 556 >gi|213850350|ref|ZP_03381248.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 110 Score = 158 bits (398), Expect = 4e-36, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 3/110 (2%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P ILD+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 P ++G + ++ H +P LSL+ +++ E F R+ + ++ Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN 107 >gi|304399036|ref|ZP_07380905.1| DNA ligase (NAD(+)) [Pantoea sp. aB] gi|304353496|gb|EFM17874.1| DNA ligase (NAD(+)) [Pantoea sp. aB] Length = 583 Score = 157 bits (397), Expect = 5e-36, Method: Composition-based stats. Identities = 118/622 (18%), Positives = 218/622 (35%), Gaps = 89/622 (14%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + +A +E+ L+Q++ + DD YY+ + + D++YDAL++R H F + P Sbjct: 29 TPVRATEEIGRLQQQLQHWDDAYYRQGQSPVTDTDYDALQQRLVTWQHCFSASQPTYSPQ 88 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P + H I ++K+ + L ++ W ++P Sbjct: 89 LP----------GKGEHLHPIAHTGVKKMRDKLALAYWMQGRRDLW-----------VQP 127 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG +++ Y G+ V RGDG GE+ A IP IP + + EV Sbjct: 128 KVDGIAVSLVYRHGRLVSLLSRGDGLRGEEWLAKAAWIPAIPLHIETPLD-------EVV 180 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + FL +N A+ N R+ +G + T + L F+ + Sbjct: 181 LQGELFLLMNGHQQAIDG--GKNARSLVAGAMMSRQRTPLLDSLGVFIWAWPDGPATMTE 238 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 ++ + + ++ V+ + + LP+ DG+V Sbjct: 239 RHEQLSRWGLGIAAEWSHNVK-----DEEDVAIWRERWFHAALPFVTDGVVVHQSLRPAG 293 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 K W ++ K+ + S +L +D IGRTG + V L+PV + + Sbjct: 294 KNWLPGEGI--WAVAWKYQPPEVSAEVLSVDFLIGRTGKIAAVLNLQPVQLDDKTVRRVN 351 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 + DI GD V + AG+ IP++ +I Sbjct: 352 V-----------GSLRRWQESDIVAGDVVTLSLAGQGIPRLERVIWRV------------ 388 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 + P+ + T C Q L +L+ + NI G+ + Sbjct: 389 ------AERHYPQPPEASRYTPLSCYTFSAECQKQLLAKLRWLSQKTVLNIPGVERSTWL 442 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 +S TL Q + T + L+ N R R Sbjct: 443 RLLESGSMTHL----FGWLTLTPEQIAAATAL------SPERAEQLWHRFNLARQQPFRR 492 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 ++ +LG+ + + +L Q+ +I+ + W +L P VG +A + Sbjct: 493 WVKALGV-SLPQKALNALPD---------QQWESIMRRDVMAWQTL---PGVGAGLATRL 539 Query: 613 VEFYQNPRNICAVEALLKEVSP 634 E +Q+ R + L ++ P Sbjct: 540 AEQFQDARLQALIAFLQQQGIP 561 >gi|322652149|gb|EFY48511.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] Length = 100 Score = 157 bits (397), Expect = 5e-36, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 57/98 (58%), Gaps = 3/98 (3%) Query: 624 AVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680 + LL E + + + + S K +V TG+L ++ R A+ + +GA V+ Sbjct: 1 MIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAKARLVAVGAKVAGS 60 Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 61 VSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 98 >gi|237728943|ref|ZP_04559424.1| NAD-dependent DNA ligase LigB [Citrobacter sp. 30_2] gi|226909565|gb|EEH95483.1| NAD-dependent DNA ligase LigB [Citrobacter sp. 30_2] Length = 559 Score = 156 bits (395), Expect = 8e-36, Method: Composition-based stats. Identities = 111/619 (17%), Positives = 219/619 (35%), Gaps = 93/619 (15%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S +A +E+S L+Q+I+ +D Y++ + + D YD L + F D A Sbjct: 26 SPARANEEISRLQQQITQWNDSYWKQGESAVDDGVYDQLNAQLIQWQRCFGDEAP----- 80 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P + V+H +P + K+ + + L +++ ++P Sbjct: 81 -PDLSV--PPISG--TVSHPVPHTGVRKLADKQALHQWM-----------HARSDLWVQP 124 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG +T+ Y KG V A RG+G GED + + IP++P ++GE++ Sbjct: 125 KVDGVAVTLVYRKGNLVRAISRGNGLKGEDWTQKVLQIPSVPHSTKGK-LANSTLQGEIF 183 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + G N R+ +G++ R T++ R L F+ + + Sbjct: 184 L-----QQEGHIQKQRGGM---NARSKVAGLMMRQGNTEMLRSLAIFIWAWPDGPAVMPE 235 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 ++ V+ A+ + + S LP+ DG+V + + Sbjct: 236 RLEQLTAAGFSYTQRYTQAVKNADDVEKSRARWW-----SSALPFVTDGVVVRTAKEPRA 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + W+ + K+ + + I +G++G + VA L PV + + Sbjct: 291 QYWLPGQGD--WLAAWKYPPVTRVSEVTGIQFSVGKSGKIAVVALLTPVMLDDKRVQRVN 348 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 + DI GD++LV AG+ IP++ +++ Sbjct: 349 I-----------GSVRRWNEWDIAPGDQILVSLAGQGIPRIDEVVWR------------- 384 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 S P G+ + C Q + RL ++ +EG+G+ Sbjct: 385 ------STQRTKPIPPEGRFNSLTCFYATAECQEQFVARLVWLGGKEVLGLEGIGEAGWR 438 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + L + Q S + L+ N R++ R Sbjct: 439 ELNQVYRFE----HIFSWLGLTQEQLESALGVIKGE--------KLWHQFNLSRDLPFTR 486 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 ++ ++GI A A S+Q + D S ++P +G+ A+ + Sbjct: 487 WVIAMGI---PLTQATLNASRDGSWQQLKE----------RDEQSWRQLPFMGERRARQV 533 Query: 613 VEFYQNPRNICAVEALLKE 631 +++ R + A+ L Sbjct: 534 IQWL-EDREVTALSNWLAA 551 >gi|260599943|ref|YP_003212514.1| NAD-dependent DNA ligase LigB [Cronobacter turicensis z3032] gi|260219120|emb|CBA34475.1| DNA ligase B [Cronobacter turicensis z3032] Length = 550 Score = 156 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 110/620 (17%), Positives = 216/620 (34%), Gaps = 92/620 (14%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + EQAR+E+++LE +++ D+ Y+ + + D+ YD +++R + F S P Sbjct: 14 TSEQARQEVAALESQLARWDEAYWLRGENNVSDAVYDGMRQRLNVWKTCFSLATVSAAP- 72 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 + H + ++K+ + L +++ ++P Sbjct: 73 --------PPVAAGRTH-HPVAHTGVQKLKDAASLSQWM-----------HGKTDLWVQP 112 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG +++ Y KG+ RGDG GED +A R IP IP + ++GE++ Sbjct: 113 KVDGVAVSLVYRKGELRQVISRGDGLQGEDWTARARHIPAIPLQVKGE-LADSVLQGELF 171 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + + + N R +G + R + + L+ F+ + Sbjct: 172 LRREG--------HHQQQDGGINARAQVAGAMMRNTASPLLNDLDLFIWAWPDGPKEM-- 221 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 L + GFP+ R + V+ + P + E Sbjct: 222 --ETRLTILAQGGFPL---ARAWSQPVSSVADVTRWRKQWFREPLPFVTDGVVIREAREP 276 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 R W+ + K+ + T + + +GRTG ++ VA+LEP+ + ++ + Sbjct: 277 PGKSWRPGEGSWVAAWKYPPVKQVTEVNALRFAVGRTGKISVVAQLEPITLDDKQVSKVS 336 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 + D+ GD V V AG+ IP++ Sbjct: 337 I-----------GSLTRWEKLDLAEGDEVEVSLAGQGIPRLD------------------ 367 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + R A C C Q + RL + F++ G+G+ Sbjct: 368 --AVVWRPAKRSKPAPPAARFDALSCLFATGACEEQFISRLVWLSGKPVFDLAGMGEATW 425 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 L S ++ GF T L+ N R + + Sbjct: 426 RQLSSR----------HRFEHLFSWLALSVDALKQTPGFSAPRATRLWHQFNLTRQLPFQ 475 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R++ +LG+ + A ++LA + + + W +L P VG A+ Sbjct: 476 RWVKALGL-PLPARAWQALAD---------DTWHQLQMRDERSWQTL---PGVGAERARQ 522 Query: 612 IVEFYQNPRNICAVEALLKE 631 +V + +P + L+++ Sbjct: 523 LVNYIHHPDVAALAQWLVEQ 542 >gi|289679597|ref|ZP_06500487.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae FF5] Length = 102 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 3/105 (2%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + L E+ H+ Y+ +P I D EYD L A+ P L P+ Sbjct: 1 MKAVETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118 P ++G + +V H +P LSL + D+ +F R+ Sbjct: 58 PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTAGL 102 >gi|322835054|ref|YP_004215081.1| DNA ligase (NAD(+)) [Rahnella sp. Y9602] gi|321170255|gb|ADW75954.1| DNA ligase (NAD(+)) [Rahnella sp. Y9602] Length = 565 Score = 154 bits (390), Expect = 3e-35, Method: Composition-based stats. Identities = 116/630 (18%), Positives = 211/630 (33%), Gaps = 90/630 (14%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K E+ +E L +++ D Y+Q I DS YD L+++ + Sbjct: 20 KNMPSPDCPVWPSERLTQETHHLTAQLTQWDAAYHQSGSSPIEDSVYDHLRQK-QRL--- 75 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 + P + + TH + L K+ + + ++ W Sbjct: 76 ---WLQCASQPVPELTV---PASDDAEFTHPVAHTGLHKMKDKHAVANWMQGRKNLW--- 126 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 ++PKIDG +++ Y G+ RGDG G++ + +IP IP + Sbjct: 127 --------VQPKIDGVAVSLIYRYGQLAALVSRGDGEKGQNWTVKAASIPAIPLHIPDMS 178 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVH 241 PE+I ++GE+Y+ D N R+ +G + R + +D+ + F+ Sbjct: 179 PELI-LQGELYLLMTGHQQSAD--------GGMNARSKVAGAMMRASASDLLKQTGIFIW 229 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 + A + L+K+ GFPV A + LP+ DG Sbjct: 230 SWPDGPTLMA----DHLEKLSQFGFPVVAQFTHAVSAVE-DVEKWREDWFHQPLPFATDG 284 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V + E K + W ++ K+ + T + I GR+G +T + L+P+ Sbjct: 285 VVVRQQEEPAGKYWQNKPAV--WAVAWKYPPARQLTDVTGITTTTGRSGKVTVILNLKPL 342 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + L + + D+ GD+V V AG+ IP++ ++ Sbjct: 343 RLDDKL-----------VSKVSVGSVSRFRQWDVLPGDQVAVALAGQGIPRLDEVTWRV- 390 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 S+ P+ + A T C Q L RL +A Sbjct: 391 -----------------SKRTEMPLPEPTRYNALSCFTPEPGCMQQFLSRLIWLSGPEAL 433 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 ++ G G + I + ++ + G G L Sbjct: 434 DMAGFGGATWQKLLDASPADSLIS----------WLSFNEKELAAVPGIGVKQAQKLMAQ 483 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I+ R S R++ ++G A Q N + + DW Sbjct: 484 IHLAREKSFRRWLSAIGFPSFALGFAER-----------QQSWNRLKQLTSRDWEM---T 529 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 +G A + +F +P EAL + Sbjct: 530 EGIGRKRAAQVFDFIHHPDVEILTEALRQA 559 >gi|325499453|gb|EGC97312.1| NAD-dependent DNA ligase LigB [Escherichia fergusonii ECD227] Length = 547 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 107/619 (17%), Positives = 210/619 (33%), Gaps = 93/619 (15%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E+S L+ ++ D Y++ K + D YD L R F ++ + Sbjct: 13 PARANEEISRLQLQLKQWSDTYWKEGKSTVEDHVYDQLSARLAQWQRCF-----GDNADS 67 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 V H + + K+ + L++++ W ++PK Sbjct: 68 ETMM---PPISG--TVMHPVAHTGVRKLADKNALQQWMRARRDVW-----------VQPK 111 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y GK A RG+G GED + +R IP++P+ +S ++GE+Y+ Sbjct: 112 VDGVAVTLVYRDGKLNQAISRGNGLKGEDWTQRLRLIPSVPQNVSGP-LANSTLQGEIYL 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + + N R+ +G++ R TD L F+ + Sbjct: 171 QREG--------HIQQQMGGMNARSKVAGMMMRHGNTDTLNSLGVFIWAWPDGPQSMP-- 220 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 + R+ N+ + +E ++ LP+ DG+V +V + + Sbjct: 221 -ERLQILTAAGFILTQQYTREVNSAREVEQIRSEW--WKTKLPFVTDGVVVRVGKEPDSR 277 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 W+ + K+ + I +G++G + VA L P+ + + + Sbjct: 278 HWQPGQGD--WLAAWKYPPIAQVAEVNAIHFTVGKSGKIAVVASLAPIKLDDKRVQRVNI 335 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP++ Sbjct: 336 -----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID------------------- 365 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 + R + C C Q + RL S+ ++G+G+ Sbjct: 366 -NVVWRGTERTKPTPPENRFNSLTCYFASDVCREQFISRLVWLGSKQVLGLDGIGEAGWR 424 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++ L Q +T G L+ N R R Sbjct: 425 ALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARKQPFTR 474 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 ++ ++GI A + L + S+Q + DW L P G A + Sbjct: 475 WLMAMGIPLTQAALKSHL---FDSWQQVMSQTKQ-------DWQQL---PGTGSRRASQV 521 Query: 613 VEFYQNPRNICAVEALLKE 631 +++ ++ +I + + + Sbjct: 522 IKW-RDDSDISVLRSWMSA 539 >gi|166226376|sp|A8ARN4|LIGB_CITK8 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B Length = 560 Score = 153 bits (387), Expect = 8e-35, Method: Composition-based stats. Identities = 112/624 (17%), Positives = 221/624 (35%), Gaps = 93/624 (14%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 S +A E++ L+Q+++ +D Y+Q + DS YD L + F Sbjct: 21 ACPDWSPARANDEIARLQQQLAQWNDSYWQQGVSAVDDSVYDQLSAQLVQWQRCFGGDTG 80 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 +E + H +P + K+ + + +++++ + W Sbjct: 81 AEL---------APPVSG--SLPHPVPHTGVRKLADKQAVQQWMRKRSDLW--------- 120 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 ++PK+DG +T+ Y G+ V A RG+G GED + +R IP +P+ + Sbjct: 121 --VQPKVDGVAVTLVYRDGRLVSAISRGNGLKGEDWTQKVRLIPAVPQSTKGA-LANSTL 177 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247 +GE+++ L N +G N R+ +G++ R N T + L+ F+ Sbjct: 178 QGEIFL-----LHDNHIQRQMGGM---NARSKVAGMMMRQNNTSSLQSLSVFIWAWPDGP 229 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + ++ + V+ A+ + + + + LP+ DG+V + Sbjct: 230 ATMPERLRQLSGAGFGFAQQYSQPVKSADDVERVRTAWW-----TTGLPFVTDGVVVRTG 284 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + W+++ K+ + + +G++G ++ VA L PV + Sbjct: 285 KEPEARHW--MPGQGDWLVAWKYPPVAKVAEVTGVQFAVGKSGKISVVASLAPVMLDDKR 342 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + + DI GD +LV AG+ IP++ Sbjct: 343 VKRVNV-----------GSVRRWEEWDIAPGDHILVSLAGQGIPRID------------- 378 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGL 486 + RD G A C C Q + RL S++A ++G+ Sbjct: 379 -------KVVWRSTQRDKPAPPGNRYNALTCFYATEVCQEQFIARLVWLGSKEALEVDGM 431 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G+ + A L + Q +T GF L+ N R Sbjct: 432 GEAGWRVLHQ----AHRFEHIFSWLALTQEQLQAT------PGFSKEKSKQLWHQFNLVR 481 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + R++ ++GI + N + ++A + W L P G+ Sbjct: 482 HRPFIRWVMAMGIPLTQGALK----------ANGDRSWGQLLARTAEYWQQL---PTTGE 528 Query: 607 IIAQAIVEFYQNPRNICAVEALLK 630 A+ ++++ NP L Sbjct: 529 GRARRVIQWRDNPEIRALGNWLAA 552 >gi|157149264|ref|YP_001456583.1| NAD-dependent DNA ligase LigB [Citrobacter koseri ATCC BAA-895] gi|157086469|gb|ABV16147.1| hypothetical protein CKO_05104 [Citrobacter koseri ATCC BAA-895] Length = 576 Score = 153 bits (387), Expect = 8e-35, Method: Composition-based stats. Identities = 112/624 (17%), Positives = 221/624 (35%), Gaps = 93/624 (14%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 S +A E++ L+Q+++ +D Y+Q + DS YD L + F Sbjct: 37 ACPDWSPARANDEIARLQQQLAQWNDSYWQQGVSAVDDSVYDQLSAQLVQWQRCFGGDTG 96 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 +E + H +P + K+ + + +++++ + W Sbjct: 97 AEL---------APPVSG--SLPHPVPHTGVRKLADKQAVQQWMRKRSDLW--------- 136 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 ++PK+DG +T+ Y G+ V A RG+G GED + +R IP +P+ + Sbjct: 137 --VQPKVDGVAVTLVYRDGRLVSAISRGNGLKGEDWTQKVRLIPAVPQSTKGA-LANSTL 193 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247 +GE+++ L N +G N R+ +G++ R N T + L+ F+ Sbjct: 194 QGEIFL-----LHDNHIQRQMGGM---NARSKVAGMMMRQNNTSSLQSLSVFIWAWPDGP 245 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + ++ + V+ A+ + + + + LP+ DG+V + Sbjct: 246 ATMPERLRQLSGAGFGFAQQYSQPVKSADDVERVRTAWW-----TTGLPFVTDGVVVRTG 300 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + W+++ K+ + + +G++G ++ VA L PV + Sbjct: 301 KEPEARHW--MPGQGDWLVAWKYPPVAKVAEVTGVQFAVGKSGKISVVASLAPVMLDDKR 358 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + + DI GD +LV AG+ IP++ Sbjct: 359 VKRVNV-----------GSVRRWEEWDIAPGDHILVSLAGQGIPRID------------- 394 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGL 486 + RD G A C C Q + RL S++A ++G+ Sbjct: 395 -------KVVWRSTQRDKPAPPGNRYNALTCFYATEVCQEQFIARLVWLGSKEALEVDGM 447 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G+ + A L + Q +T GF L+ N R Sbjct: 448 GEAGWRVLHQ----AHRFEHIFSWLALTQEQLQAT------PGFSKEKSKQLWHQFNLVR 497 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + R++ ++GI + N + ++A + W L P G+ Sbjct: 498 HRPFIRWVMAMGIPLTQGALK----------ANGDRSWGQLLARTAEYWQQL---PTTGE 544 Query: 607 IIAQAIVEFYQNPRNICAVEALLK 630 A+ ++++ NP L Sbjct: 545 GRARRVIQWRDNPEIRALGNWLAA 568 >gi|1816524|gb|AAB42062.1| DNA ligase [Escherichia coli] Length = 90 Score = 153 bits (387), Expect = 8e-35, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 3/92 (3%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE 105 P ++G + ++ H +P LSL+ +++ E Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEE 89 >gi|306816005|ref|ZP_07450143.1| NAD-dependent DNA ligase LigB [Escherichia coli NC101] gi|305850401|gb|EFM50858.1| NAD-dependent DNA ligase LigB [Escherichia coli NC101] Length = 560 Score = 153 bits (387), Expect = 9e-35, Method: Composition-based stats. Identities = 109/617 (17%), Positives = 198/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + LR ++ W Sbjct: 76 ---GNETRDVMMPPLAG--TVMHPVAHTGVRKLADKNALRLWMREHNDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV Sbjct: 179 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + R + NE ++ LP+ DG+V + + Sbjct: 231 LMT---DRLKDLATAGFTLTQTYTRAVKNTDEVAHVRNEW--WKAKLPFVTDGVVVRAAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|309800389|ref|ZP_07694554.1| DNA ligase [Streptococcus infantis SK1302] gi|308115980|gb|EFO53491.1| DNA ligase [Streptococcus infantis SK1302] Length = 240 Score = 153 bits (386), Expect = 1e-34, Method: Composition-based stats. Identities = 66/259 (25%), Positives = 117/259 (45%), Gaps = 28/259 (10%) Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S+++ + A RC C AQ E L HF SRDA NI GLG Sbjct: 9 PTNCPSCDSKLLHFEDE------VALRCINPR-CPAQIKEGLTHFASRDAMNISGLGPSI 61 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F A ++ ADI+ L + G + S LY +I + S Sbjct: 62 VKKLF----AADLVKDVADIYHLTVEDL------LLLDGIKEKSAQKLYQAIQASKENSA 111 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E+ +F LGIRHVG++ ++ L + + S ++ AQ + + + +G +IAQ Sbjct: 112 EKLLFGLGIRHVGSKASQLLLQNFHSIESLAQA----------NPEEIASIESLGSVIAQ 161 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++ ++ + + L + + ++ + +V TG L+++ R +A+ Sbjct: 162 SLQTYFATEGSEILLRELKESGVNLDYKGQTVAANAALSGLTVVLTGKLERLNRSEAKNK 221 Query: 670 VTQLGAVVSAILSRKTDII 688 + LGA V+ +S+K ++ Sbjct: 222 LESLGAKVTGSVSKKQTLL 240 >gi|293417108|ref|ZP_06659735.1| DNA ligase [Escherichia coli B185] gi|291431139|gb|EFF04132.1| DNA ligase [Escherichia coli B185] Length = 562 Score = 153 bits (386), Expect = 1e-34, Method: Composition-based stats. Identities = 108/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 24 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 78 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV + Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 233 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 287 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N+ R Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNQARK 484 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A S+ W L P +G Sbjct: 485 QPFTRWVMAMGIPLTRVA---LNASDERSWSQLLVSTEQF-------WQQL---PGIGSG 531 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 532 RARQVIEWKENAQIKKL 548 >gi|323934808|gb|EGB31190.1| NAD-dependent DNA ligase adenylation domain-containing protein [Escherichia coli E1520] Length = 560 Score = 153 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 108/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + E+ L V+ A+ + + + + + P+ DG+V + + Sbjct: 231 LMSDRLKELATAGFTLTQRYTRAVKNADEVARVRNDWWKAEL-----PFVTDGVVVRAAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|167036006|ref|YP_001671237.1| NAD-dependent DNA ligase LigB [Pseudomonas putida GB-1] gi|189046591|sp|B0KLZ2|LIGB_PSEPG RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|166862494|gb|ABZ00902.1| DNA ligase (NAD(+)) [Pseudomonas putida GB-1] Length = 566 Score = 153 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 111/616 (18%), Positives = 210/616 (34%), Gaps = 95/616 (15%) Query: 31 HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90 D+ Y++ ++ D YD ++R + F LA S P + + + Sbjct: 45 WDEHYHRQGIALVADELYDQSRQRLVHLQQCFG-LAPSPSP----------LTSARGPLP 93 Query: 91 HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150 H +P ++K+ + + + +++ ++PK DG ++ Y +G+ V Sbjct: 94 HPVPHTGVDKLADRQAVARWMA-----------GKTGVWVQPKFDGVAASLIYRQGQLVQ 142 Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210 RGDG G D S I + + R L I + ++GE+Y+ N+ + Sbjct: 143 LISRGDGLQGHDWSRHIPQLGAVTRQLPQAI--DLHLQGELYLRLNE--------HVQAK 192 Query: 211 KPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN 270 AN R +G+L R T + Q + L ++ LGFP + Sbjct: 193 AGSANARGTVAGLLARKQLTREQGNTIGLF---VWGWPHGPERQADRLAQLAQLGFPDSQ 249 Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 A + + E RS LP+ DG++ ++ +A++P W+ + K+ Sbjct: 250 HYSIAVDTLEDAARWREH-WYRSPLPFASDGVILRLGSR--PPAERWQAKAPYWIAAWKY 306 Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390 QA + D+ ++GRTG +TP+A ++PV + IT +L Sbjct: 307 PYVQALAEVRDVRFRVGRTGRITPIAHVQPVTLDDRRITQVSL-----------GSLARW 355 Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450 DIR GD+V + AG IP++ ++ + L Sbjct: 356 QALDIRPGDQVAISLAGLTIPRLEHVVHRAVE-------------------RQPLGAPAP 396 Query: 451 KLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509 A C C Q + RL + + G A + D Sbjct: 397 GRHHALSCWQPSEGCEEQFIARLTWLSGKQGLALPRTGPGTWRRLVD----AGLVTSMTD 452 Query: 510 IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569 L + + G ++ L S ++ R+ ++++ LG Sbjct: 453 WLQLDAERLQ------QVPGISSLTAAQLLGSFDQARSRPFDQWLRGLGAP--------- 497 Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629 + K+ Q + VP +G ++ +V F+ L Sbjct: 498 IGKH-------LQLTGGWQEMASRSAGQWQTVPDIGVKRSRQLVGFFAAAEVQAIATRLA 550 Query: 630 KEVSPSIGRHEKNVSS 645 + + + Sbjct: 551 ESGIEGFSPPPERIEQ 566 >gi|300898582|ref|ZP_07116912.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 198-1] gi|300357745|gb|EFJ73615.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 198-1] Length = 561 Score = 153 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 112/617 (18%), Positives = 208/617 (33%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + Sbjct: 23 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF----GN 78 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 E P+ + V H + + K+ + L ++ W Sbjct: 79 ETPD-----VMMPPLNG--AVIHPVAHTGVRKMADKIALSLWMRERSDLW---------- 121 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S ++ Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 179 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 180 GEIFLKREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 232 LMTDRLKELATAGFTLTQTYTRAVKNADEVARVRNAWWKAKL-----PFVTDGVVVRAAK 286 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKTIQFAVGKSGKISVVASLAPVMLDDKKV 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 345 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 379 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 433 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 434 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 483 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 484 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLLSTEQF-------WQQL---PGTGSG 530 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 531 RARQVIEWKENAQIKKL 547 >gi|218707281|ref|YP_002414800.1| NAD-dependent DNA ligase LigB [Escherichia coli UMN026] gi|293407270|ref|ZP_06651194.1| DNA ligase B [Escherichia coli FVEC1412] gi|298383016|ref|ZP_06992611.1| DNA ligase [Escherichia coli FVEC1302] gi|226737618|sp|B7NEV1|LIGB_ECOLU RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|218434378|emb|CAR15303.1| DNA ligase, NAD(+)-dependent [Escherichia coli UMN026] gi|291426081|gb|EFE99115.1| DNA ligase B [Escherichia coli FVEC1412] gi|298276852|gb|EFI18370.1| DNA ligase [Escherichia coli FVEC1302] Length = 560 Score = 153 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 112/617 (18%), Positives = 208/617 (33%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF----GN 77 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 E P+ + V H + + K+ + L ++ W Sbjct: 78 ETPD-----VMMPPLNG--AVIHPVAHTGVRKMADKIALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 179 GEIFLKREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 231 LMTDRLKELATAGFTLTQTYTRAVKNADEVARVRNAWWKAKL-----PFVTDGVVVRAAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKTIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLLSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|330903436|gb|EGH34008.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. japonica str. M301072PT] Length = 130 Score = 153 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 4/124 (3%) Query: 607 IIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQ 662 QA+ +F+ + N A+EA LK+ +K V + + V TG+L+++ Sbjct: 7 ETGQAVCDFFDDSANAERARAIEAQLKDFGMHWRSEKKTVEGLPLAGQTWVLTGSLERMS 66 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++E+ L L + Sbjct: 67 RDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRLTELG 126 Query: 723 TTLR 726 + Sbjct: 127 VAVD 130 >gi|312948208|gb|ADR29035.1| NAD-dependent DNA ligase LigB [Escherichia coli O83:H1 str. NRG 857C] Length = 560 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 110/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---GNETRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV Sbjct: 179 GEIFLQRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + ++ L V+ A+ + + + + K P+ DG+V + + Sbjct: 231 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + I Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKI 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|227883837|ref|ZP_04001642.1| NAD-dependent DNA ligase LigB [Escherichia coli 83972] gi|300984900|ref|ZP_07177188.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 45-1] gi|301047437|ref|ZP_07194516.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 185-1] gi|227839115|gb|EEJ49581.1| NAD-dependent DNA ligase LigB [Escherichia coli 83972] gi|300300645|gb|EFJ57030.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 185-1] gi|300408329|gb|EFJ91867.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 45-1] gi|307555765|gb|ADN48540.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli ABU 83972] gi|315292916|gb|EFU52268.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 153-1] Length = 561 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 110/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 23 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 76 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 77 ---GNETRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 121 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S ++ Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 179 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV Sbjct: 180 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + ++ L V+ A+ + + + + K P+ DG+V + + Sbjct: 232 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 286 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + I Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKI 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 345 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 379 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 433 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 434 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 483 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 484 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 530 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 531 RARQVIEWKENAQIKKL 547 >gi|166226372|sp|Q8FC83|LIGB_ECOL6 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B Length = 560 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 110/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---GNETRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV Sbjct: 179 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + ++ L V+ A+ + + + + K P+ DG+V + + Sbjct: 231 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + I Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKI 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|26250293|ref|NP_756333.1| NAD-dependent DNA ligase LigB [Escherichia coli CFT073] gi|26110723|gb|AAN82907.1|AE016769_22 Hypothetical DNA ligase-like protein yicF [Escherichia coli CFT073] Length = 562 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 110/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 24 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 78 ---GNETRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S ++ Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV Sbjct: 181 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + ++ L V+ A+ + + + + K P+ DG+V + + Sbjct: 233 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 287 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + I Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKI 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 484 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 532 RARQVIEWKENAQIKKL 548 >gi|324111541|gb|EGC05522.1| NAD-dependent DNA ligase adenylation domain-containing protein [Escherichia fergusonii B253] Length = 561 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 102/619 (16%), Positives = 208/619 (33%), Gaps = 93/619 (15%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E+S L+ ++ D Y++ K + D YD L R F ++ + Sbjct: 27 PARANEEISRLQLQLKQWSDTYWKEGKSKVEDHVYDQLSARLAQWQRCF-----GDNADS 81 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 V H + + K+ + L++++ W ++PK Sbjct: 82 ETMM---PPISG--TVMHPVAHTGVRKLADKNALQQWMRARRDVW-----------VQPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y GK A RG+G GED + +R IP++P+ +S + ++GE+Y+ Sbjct: 126 VDGVAVTLVYRDGKLNQAISRGNGLKGEDWTQRLRLIPSVPQNVSGPLSN-STLQGEIYL 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + + N R+ +G++ R TD L F+ + Sbjct: 185 QREG--------HIQQQMGGMNARSKVAGMMMRHGNTDTLNSLGVFIWAWPDGPQSMP-- 234 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 + R+ N+ + +E ++ LP+ DG+V +V + + Sbjct: 235 -ERLQILTAAGFILTQQYTREVNSAREVEQVRSEW--WKTKLPFVTDGVVVRVGKEPDSR 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 W+ + K+ + I +G++G + VA L P+ + + + Sbjct: 292 HWQPGQGD--WLAAWKYPPIAQVAEVNAIHFTVGKSGKIAVVASLAPIKLDDKRVQRVNI 349 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP++ Sbjct: 350 -----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID------------------- 379 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 + R + C C Q + RL S+ ++G+G+ Sbjct: 380 -NVVWRGTERTKPTPPENRFNSLTCYFASDVCREQFISRLVWLGSKQVLGLDGIGEAGWR 438 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++ L Q ST G L + + R Sbjct: 439 ALHQTHRFE----HIFSWLLLTPEQIQST------PGIAKSKSEQLRHQFHLAKKQPFTR 488 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 ++ ++GI A + + S+Q + ++P G A + Sbjct: 489 WLMAMGI---PLTQAALKSHPFDSWQQVMSQTK----------QEWQQLPGTGSRRASQV 535 Query: 613 VEFYQNPRNICAVEALLKE 631 +++ ++ +I + + + Sbjct: 536 IKW-RDDSDISVLSSWMSA 553 >gi|331644366|ref|ZP_08345495.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli H736] gi|331655280|ref|ZP_08356279.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli M718] gi|331036660|gb|EGI08886.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli H736] gi|331047295|gb|EGI19373.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli M718] Length = 562 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 108/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 24 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 78 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + E+ L V+ A+ + + + + + P+ DG+V + + Sbjct: 233 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 287 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 484 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 532 RARQVIEWKENAQIKKL 548 >gi|300950021|ref|ZP_07163971.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 116-1] gi|300955364|ref|ZP_07167743.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 175-1] gi|301644314|ref|ZP_07244316.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 146-1] gi|300317736|gb|EFJ67520.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 175-1] gi|300450635|gb|EFK14255.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 116-1] gi|301077352|gb|EFK92158.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 146-1] Length = 561 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 108/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 23 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 76 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 77 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 121 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 179 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 180 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + E+ L V+ A+ + + + + + P+ DG+V + + Sbjct: 232 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 286 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 345 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 379 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 433 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 434 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 483 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 484 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 530 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 531 RARQVIEWKENAQIKKL 547 >gi|256025622|ref|ZP_05439487.1| NAD-dependent DNA ligase LigB [Escherichia sp. 4_1_40B] gi|307140346|ref|ZP_07499702.1| NAD-dependent DNA ligase LigB [Escherichia coli H736] gi|315618649|gb|EFU99235.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli 3431] Length = 560 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 108/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + E+ L V+ A+ + + + + + P+ DG+V + + Sbjct: 231 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|331649461|ref|ZP_08350547.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli M605] gi|331041959|gb|EGI14103.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli M605] Length = 562 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 109/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 24 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 78 ---GNETRDVMIPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S ++ Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV Sbjct: 181 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + ++ L V+ A+ + + + + K P+ DG+V + + Sbjct: 233 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 287 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 484 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 532 RARQVIEWKENAQIKKL 548 >gi|330909708|gb|EGH38222.1| DNA ligase , LigB [Escherichia coli AA86] Length = 560 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 109/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---GNETRDVMIPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV Sbjct: 179 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + ++ L V+ A+ + + + + K P+ DG+V + + Sbjct: 231 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|218697368|ref|YP_002405035.1| NAD-dependent DNA ligase LigB [Escherichia coli 55989] gi|300923458|ref|ZP_07139498.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 182-1] gi|301325330|ref|ZP_07218837.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 78-1] gi|307314268|ref|ZP_07593876.1| DNA ligase (NAD(+)) [Escherichia coli W] gi|254809144|sp|B7L771|LIGB_ECO55 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|218354100|emb|CAV00658.1| DNA ligase, NAD(+)-dependent [Escherichia coli 55989] gi|300420285|gb|EFK03596.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 182-1] gi|300847857|gb|EFK75617.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 78-1] gi|306906091|gb|EFN36610.1| DNA ligase (NAD(+)) [Escherichia coli W] gi|315062935|gb|ADT77262.1| DNA ligase, NAD(+)-dependent [Escherichia coli W] gi|323376472|gb|ADX48740.1| DNA ligase (NAD(+)) [Escherichia coli KO11] gi|324116014|gb|EGC09940.1| NAD-dependent DNA ligase adenylation domain-containing protein [Escherichia coli E1167] Length = 560 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 109/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 231 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|300815113|ref|ZP_07095338.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 107-1] gi|300532005|gb|EFK53067.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 107-1] Length = 560 Score = 151 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 109/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 231 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWEEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|300822417|ref|ZP_07102557.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 119-7] gi|309797611|ref|ZP_07691999.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 145-7] gi|300525064|gb|EFK46133.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 119-7] gi|308118798|gb|EFO56060.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 145-7] Length = 561 Score = 151 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 109/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 23 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 76 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 77 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 121 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 179 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 180 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 232 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 286 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 345 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 379 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 433 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 434 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 483 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 484 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 530 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 531 RARQVIEWKENAQIKKL 547 >gi|171855259|sp|A7ZTJ9|LIGB_ECO24 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B Length = 560 Score = 151 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 109/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 231 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|157158891|ref|YP_001465128.1| NAD-dependent DNA ligase LigB [Escherichia coli E24377A] gi|331670488|ref|ZP_08371327.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli TA271] gi|331679739|ref|ZP_08380409.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli H591] gi|157080921|gb|ABV20629.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E24377A] gi|331062550|gb|EGI34470.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli TA271] gi|331072911|gb|EGI44236.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli H591] Length = 562 Score = 151 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 109/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 24 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 78 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 233 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 287 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 484 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 532 RARQVIEWKENAQIKKL 548 >gi|284923709|emb|CBG36806.1| putative DNA ligase [Escherichia coli 042] Length = 560 Score = 151 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 110/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---GNETRDVMMPPLNG--AVIHPVAHTGVRKMADKIALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 179 GEIFLKREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 231 LMTDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRAAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVVEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLLSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|323975134|gb|EGB70239.1| NAD-dependent DNA ligase adenylation domain-containing protein [Escherichia coli TW10509] Length = 560 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 115/617 (18%), Positives = 209/617 (33%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ + I D YD L R F + +R Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCFGNESRD 81 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 V H + + K+ + LR ++ W Sbjct: 82 AMM---------PPLAG--TVMHPVAHTGVRKLADKNALRLWMREHNDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + IP++P+ +S + ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLIPSVPQTVSGPLVN-STLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R+ +G+L R +D L FV ++ Sbjct: 179 GEIFLKREG--------HIQQQMGGINARSKVAGLLMRQGNSDTLNSLGVFVWAWPDGTQ 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + Q R N + NE ++ LP+ DG+V + + Sbjct: 231 LMT---DRLQQLTTAGFTLTQMYTRAVNNADEVERIRNEW--WKAKLPFVTDGVVVRAAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNV-----------GSVRRWQEWDIAPGDKILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------NVVWRGTERTKPTPPENRFNSLTCYFASDVCREQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G T L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSTQLWHQFNLARK 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|301028426|ref|ZP_07191672.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 196-1] gi|299878537|gb|EFI86748.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 196-1] Length = 560 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 108/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLWG--------- 121 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 122 --QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + E+ L V+ A+ + + + + + P+ DG+V + + Sbjct: 231 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|293413081|ref|ZP_06655749.1| DNA ligase [Escherichia coli B354] gi|291468728|gb|EFF11221.1| DNA ligase [Escherichia coli B354] Length = 561 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 115/617 (18%), Positives = 211/617 (34%), Gaps = 92/617 (14%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGEETHR 81 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + PLN G V H + + K+ + L ++ W Sbjct: 82 DAMMPPLN--GA--------VIHPVAHTGVRKMADKIALSLWMRERSDLW---------- 121 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S ++ Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 179 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L+ FV + Sbjct: 180 GEIFLKREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLDVFVWAWPDGPQ 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 232 LMTDRLKELATAGFTLTQTYTRAVKNADEVARVRNAWWKAKL-----PFVTDGVVVRAAK 286 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVAQVVEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 345 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 379 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ F ++G+G Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVFGLDGIG 433 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ F L Q +T G L+ N R Sbjct: 434 EAGWRALHQTHRFE----HIFSWFLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 483 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A S+ W L P G Sbjct: 484 QPFTRWVMAMGIPLTRVA---LNASDERSWSQLLLSTEQF-------WQQL---PGTGSG 530 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 531 RARQVIEWKENAQIKKL 547 >gi|191170589|ref|ZP_03032142.1| NAD-dependent DNA ligase adenylation domain [Escherichia coli F11] gi|190909397|gb|EDV68983.1| NAD-dependent DNA ligase adenylation domain [Escherichia coli F11] Length = 562 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 110/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ + I D YD L R F + R Sbjct: 24 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCFGNEPRD 83 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 V H + + K+ + LR ++ W Sbjct: 84 AMM---------PPLAG--TVMHPVAHTGVRKLADKNALRLWMREHNDLW---------- 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV Sbjct: 181 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + ++ L V+ A+ + + + + K P+ DG+V + + Sbjct: 233 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 287 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 484 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 532 RARQVIEWKENAQIKKL 548 >gi|110643888|ref|YP_671618.1| NAD-dependent DNA ligase LigB [Escherichia coli 536] gi|300983472|ref|ZP_07176619.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 200-1] gi|110345480|gb|ABG71717.1| hypothetical DNA ligase-like protein YicF [Escherichia coli 536] gi|300306936|gb|EFJ61456.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 200-1] gi|324012718|gb|EGB81937.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 60-1] Length = 561 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 110/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ + I D YD L R F + R Sbjct: 23 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCFGNEPRD 82 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 V H + + K+ + LR ++ W Sbjct: 83 AMM---------PPLAG--TVMHPVAHTGVRKLADKNALRLWMREHNDLW---------- 121 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 179 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV Sbjct: 180 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + ++ L V+ A+ + + + + K P+ DG+V + + Sbjct: 232 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 286 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 345 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 379 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 433 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 434 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 483 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 484 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 530 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 531 RARQVIEWKENAQIKKL 547 >gi|166226371|sp|Q0TBG2|LIGB_ECOL5 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B Length = 560 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 110/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ + I D YD L R F + R Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCFGNEPRD 81 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 V H + + K+ + LR ++ W Sbjct: 82 AMM---------PPLAG--TVMHPVAHTGVRKLADKNALRLWMREHNDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV Sbjct: 179 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + ++ L V+ A+ + + + + K P+ DG+V + + Sbjct: 231 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|218691930|ref|YP_002400142.1| NAD-dependent DNA ligase LigB [Escherichia coli ED1a] gi|254809145|sp|B7N287|LIGB_ECO81 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|218429494|emb|CAR10458.2| DNA ligase, NAD(+)-dependent [Escherichia coli ED1a] Length = 560 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 109/617 (17%), Positives = 207/617 (33%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---GNETRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV Sbjct: 179 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + ++ L V+ A+ + + + + K P+ DG+V + + Sbjct: 231 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + I Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKI 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI L + L+ + + + ++ W L P G Sbjct: 483 QPFTRWVMAMGIP---------LTRAALNASD-ERSWSQLLFSKEQFWQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|213620585|ref|ZP_03373368.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 82 Score = 151 bits (381), Expect = 5e-34, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 50/80 (62%) Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694 + + + + S K +V TG+L ++ R A+ + LGA V+ +S+KTD++I G+ Sbjct: 3 PVVINAQEIDSPFAGKTVVLTGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAA 62 Query: 695 GSKLEKAQQLGVKIMNEEQF 714 GSKL KAQ+LG+ +++E + Sbjct: 63 GSKLAKAQELGITVIDEAEM 82 >gi|293463971|ref|ZP_06664385.1| DNA ligase B [Escherichia coli B088] gi|291321603|gb|EFE61039.1| DNA ligase B [Escherichia coli B088] Length = 562 Score = 151 bits (381), Expect = 5e-34, Method: Composition-based stats. Identities = 108/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 24 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 78 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + E+ L V+ A+ + + + + + P+ DG+V + + Sbjct: 233 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRGAK 287 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 484 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 532 RARQVIEWKENAQIKKL 548 >gi|218556210|ref|YP_002389123.1| NAD-dependent DNA ligase LigB [Escherichia coli IAI1] gi|226737616|sp|B7M4D2|LIGB_ECO8A RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|218362978|emb|CAR00615.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI1] Length = 560 Score = 151 bits (381), Expect = 5e-34, Method: Composition-based stats. Identities = 108/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + E+ L V+ A+ + + + + + P+ DG+V + + Sbjct: 231 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRGAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|331675125|ref|ZP_08375882.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli TA280] gi|331068034|gb|EGI39432.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli TA280] Length = 562 Score = 151 bits (380), Expect = 5e-34, Method: Composition-based stats. Identities = 109/616 (17%), Positives = 206/616 (33%), Gaps = 91/616 (14%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 24 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 78 ---GNETRDVMMPPLNG--AVIHPVAHTGVRKMADEIALSLWMRECSDLW---------- 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S ++ Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 181 GEIFLKREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG++ + + Sbjct: 233 LMTDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVIVRAAK 287 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ KF + I +G++G ++ VA L PV + + Sbjct: 288 EPESRHW--LPGQAEWLVAWKFQPVAQVVEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ D++ Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAE------ 388 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P + + C Q + RL S+ ++G+G+ Sbjct: 389 -------------RAKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIGE 435 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 ++ L Q +T G ++ N R Sbjct: 436 AGWRALHQTHRFE----HIFSWLLLTTEQLQNT------PGIAKSKSAQIWHQFNLARKQ 485 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 R++ ++GI A A S+ W L P G Sbjct: 486 PFTRWVMAMGI---PLTRAALNASDERSWSQLLLSTEQF-------WQQL---PGTGSGR 532 Query: 609 AQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 533 ARQVIEWKENAQIKKL 548 >gi|260857958|ref|YP_003231849.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O26:H11 str. 11368] gi|260870377|ref|YP_003236779.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O111:H- str. 11128] gi|257756607|dbj|BAI28109.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O26:H11 str. 11368] gi|257766733|dbj|BAI38228.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O111:H- str. 11128] Length = 560 Score = 151 bits (380), Expect = 5e-34, Method: Composition-based stats. Identities = 109/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 231 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|323965913|gb|EGB61361.1| NAD-dependent DNA ligase adenylation domain-containing protein [Escherichia coli M863] Length = 562 Score = 151 bits (380), Expect = 5e-34, Method: Composition-based stats. Identities = 114/617 (18%), Positives = 208/617 (33%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ + I D YD L R F + +R Sbjct: 24 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCFGNESRD 83 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 V H + + K+ + LR ++ W Sbjct: 84 AMM---------PPLAG--TVMHPVAHTGVRKLADKNALRLWMREHNDLW---------- 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + IP++P+ +S + ++ Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLIPSVPQTVSGPLVN-STLQ 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R+ +G+L R +D L FV ++ Sbjct: 181 GEIFLKREG--------HIQQQMGGINARSKVAGLLMRQGNSDTLNSLGVFVWAWPDGTQ 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + Q R N + NE ++ LP+ DG+V + + Sbjct: 233 LMT---DRLQQLTTAGFTLTQTYTRAVNNADEVERIRNEW--WKAKLPFVTDGVVVRAAK 287 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 381 ------NVVWRGTERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 484 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 532 RARQVIEWKENAQIKKL 548 >gi|315296990|gb|EFU56270.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 16-3] Length = 561 Score = 151 bits (380), Expect = 5e-34, Method: Composition-based stats. Identities = 110/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 23 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 76 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 77 ---GNETRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 121 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S ++ Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 179 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV + Sbjct: 180 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 232 LMTDRLKELATAGFTLTQTYTRAVKNADEVARVRNAWWKTKL-----PFVTDGVVVRAAK 286 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 345 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 379 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 433 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 434 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGSAKSKSAQLWHQFNLARK 483 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 484 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLLSTEQF-------WQQL---PGTGSG 530 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 531 RARQVIEWKENAQIKKL 547 >gi|331659983|ref|ZP_08360921.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli TA206] gi|331053198|gb|EGI25231.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli TA206] Length = 560 Score = 151 bits (380), Expect = 5e-34, Method: Composition-based stats. Identities = 110/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---GNETRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV + Sbjct: 179 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 231 LMTDRLKELATAGFTLTQTYTRAVKNADEVARVRNAWWKTKL-----PFVTDGVVVRAAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGSAKSKSAQLWHQFNLARK 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLLSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|161367494|ref|NP_290227.2| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EDL933] Length = 560 Score = 151 bits (380), Expect = 6e-34, Method: Composition-based stats. Identities = 108/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+ L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 231 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRXAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ ++ I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|12518406|gb|AAG58791.1|AE005592_2 putative enzyme [Escherichia coli O157:H7 str. EDL933] Length = 562 Score = 151 bits (380), Expect = 6e-34, Method: Composition-based stats. Identities = 108/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+ L+Q+I DD Y++ K + D YD L R F Sbjct: 24 CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 78 ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 233 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRXAK 287 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ ++ I +G++G ++ VA L PV + + Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 484 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 532 RARQVIEWKENAQIKKL 548 >gi|300927922|ref|ZP_07143481.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 187-1] gi|300464014|gb|EFK27507.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 187-1] Length = 561 Score = 150 bits (379), Expect = 7e-34, Method: Composition-based stats. Identities = 106/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 23 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 76 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 77 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 121 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 179 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 180 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + E+ L V+ A+ + + + + + P+ DG+V + + Sbjct: 232 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 286 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 345 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 379 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + R+ ++ ++G+G Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRVVWLGAKQVLGLDGIG 433 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 434 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 483 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 484 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 530 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 531 RARQVIEWKENAQIKKL 547 >gi|301018976|ref|ZP_07183199.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 69-1] gi|300399470|gb|EFJ83008.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 69-1] Length = 561 Score = 150 bits (379), Expect = 7e-34, Method: Composition-based stats. Identities = 109/617 (17%), Positives = 201/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 23 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGIYDQLSARLTQWQRCF------ 76 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 77 ---GNETRDVMMPPLNG--AVIHPVAHTGVRKMADKIALSLWMRERSDLW---------- 121 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ S ++ Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTASGP-LANSTLQ 179 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 180 GEIFLKREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + Sbjct: 232 LMTDRLKELTTAGFTLTQTYTRAVKNADEVARVRNAWWKAKL-----PFVTDGVVVRAA- 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 -KEPESRYWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 345 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 379 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 433 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 434 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 483 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A S+ W L P G Sbjct: 484 QPFTRWVMAMGIPLTRVA---LNASDERSWSQLLLSTEQF-------WQQL---PGTGSG 530 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 531 RARQVIEWKENAQIKKL 547 >gi|315285425|gb|EFU44870.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 110-3] gi|324008103|gb|EGB77322.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 57-2] Length = 561 Score = 150 bits (379), Expect = 7e-34, Method: Composition-based stats. Identities = 107/617 (17%), Positives = 200/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 23 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 76 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 77 ---GNETRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 121 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S ++ Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 179 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV Sbjct: 180 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + ++ L V+ A+ + + + + K P+ DG+V + + Sbjct: 232 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 286 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 345 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 379 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 433 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 434 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 483 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ P G Sbjct: 484 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQFWQQQ----------PGTGSG 530 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 531 RARQVIEWKENAQIKKL 547 >gi|218560719|ref|YP_002393632.1| NAD-dependent DNA ligase LigB [Escherichia coli S88] gi|166226370|sp|A1AHH8|LIGB_ECOK1 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|166226373|sp|Q1R4U5|LIGB_ECOUT RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|226737614|sp|B7MFK8|LIGB_ECO45 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|218367488|emb|CAR05270.1| DNA ligase, NAD(+)-dependent [Escherichia coli S88] gi|307628720|gb|ADN73024.1| NAD-dependent DNA ligase LigB [Escherichia coli UM146] Length = 560 Score = 150 bits (379), Expect = 7e-34, Method: Composition-based stats. Identities = 107/617 (17%), Positives = 200/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---GNETRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + ++ L V+ A+ + + + + K P+ DG+V + + Sbjct: 231 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQFWQQQ----------PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|91213164|ref|YP_543150.1| NAD-dependent DNA ligase LigB [Escherichia coli UTI89] gi|117625919|ref|YP_859242.1| NAD-dependent DNA ligase LigB [Escherichia coli APEC O1] gi|237703441|ref|ZP_04533922.1| NAD-dependent DNA ligase LigB [Escherichia sp. 3_2_53FAA] gi|91074738|gb|ABE09619.1| hypothetical DNA ligase-like protein YicF [Escherichia coli UTI89] gi|115515043|gb|ABJ03118.1| NAD-dependent DNA ligase [Escherichia coli APEC O1] gi|226902705|gb|EEH88964.1| NAD-dependent DNA ligase LigB [Escherichia sp. 3_2_53FAA] gi|294489423|gb|ADE88179.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli IHE3034] gi|323949886|gb|EGB45770.1| NAD-dependent DNA ligase adenylation domain-containing protein [Escherichia coli H252] gi|323954950|gb|EGB50729.1| NAD-dependent DNA ligase adenylation domain-containing protein [Escherichia coli H263] Length = 562 Score = 150 bits (379), Expect = 7e-34, Method: Composition-based stats. Identities = 107/617 (17%), Positives = 200/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 24 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 78 ---GNETRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S ++ Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + ++ L V+ A+ + + + + K P+ DG+V + + Sbjct: 233 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 287 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 484 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ P G Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQFWQQQ----------PGTGSG 531 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 532 RARQVIEWKENAQIKKL 548 >gi|194435653|ref|ZP_03067756.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli 101-1] gi|194425196|gb|EDX41180.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli 101-1] Length = 562 Score = 150 bits (379), Expect = 7e-34, Method: Composition-based stats. Identities = 107/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 24 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 78 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + E+ L V+ A+ + + + + + P+ DG+V + + Sbjct: 233 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 287 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL ++ ++G+G Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLDGIG 434 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 484 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 532 RARQVIEWKENAQIKKL 548 >gi|170018123|ref|YP_001723077.1| NAD-dependent DNA ligase LigB [Escherichia coli ATCC 8739] gi|253771511|ref|YP_003034342.1| NAD-dependent DNA ligase LigB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163575|ref|YP_003046683.1| NAD-dependent DNA ligase LigB [Escherichia coli B str. REL606] gi|312972067|ref|ZP_07786241.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli 1827-70] gi|189046590|sp|B1IYV3|LIGB_ECOLC RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|169753051|gb|ACA75750.1| DNA ligase (NAD(+)) [Escherichia coli ATCC 8739] gi|242379171|emb|CAQ33973.1| DNA ligase [Escherichia coli BL21(DE3)] gi|253322555|gb|ACT27157.1| DNA ligase (NAD(+)) [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975476|gb|ACT41147.1| NAD-dependent DNA ligase LigB [Escherichia coli B str. REL606] gi|253979632|gb|ACT45302.1| NAD-dependent DNA ligase LigB [Escherichia coli BL21(DE3)] gi|310334444|gb|EFQ00649.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli 1827-70] gi|323959895|gb|EGB55543.1| NAD-dependent DNA ligase adenylation domain-containing protein [Escherichia coli H489] gi|323971289|gb|EGB66534.1| NAD-dependent DNA ligase adenylation domain-containing protein [Escherichia coli TA007] Length = 560 Score = 150 bits (379), Expect = 7e-34, Method: Composition-based stats. Identities = 107/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + E+ L V+ A+ + + + + + P+ DG+V + + Sbjct: 231 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL ++ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|300919785|ref|ZP_07136260.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 115-1] gi|300413138|gb|EFJ96448.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 115-1] Length = 561 Score = 150 bits (379), Expect = 7e-34, Method: Composition-based stats. Identities = 107/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 23 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 76 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 77 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 121 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 179 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 180 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + E+ L V+ A+ + + + + + P+ DG+V + + Sbjct: 232 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 286 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 345 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 379 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL ++ ++G+G Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLDGIG 433 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 434 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 483 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 484 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 530 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 531 RARQVIEWKENAQIKKL 547 >gi|89110365|ref|AP_004145.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. W3110] gi|90111628|ref|NP_418104.2| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. MG1655] gi|170083154|ref|YP_001732474.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. DH10B] gi|238902738|ref|YP_002928534.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952] gi|401583|sp|P25772|LIGB_ECOLI RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|226737617|sp|B1X980|LIGB_ECODH RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|259494925|sp|C4ZXN9|LIGB_ECOBW RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|85676396|dbj|BAE77646.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K12 substr. W3110] gi|87082305|gb|AAC76671.2| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. MG1655] gi|169890989|gb|ACB04696.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. DH10B] gi|238860823|gb|ACR62821.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952] gi|260447334|gb|ACX37756.1| DNA ligase (NAD(+)) [Escherichia coli DH1] gi|309704049|emb|CBJ03395.1| putative DNA ligase [Escherichia coli ETEC H10407] gi|315138229|dbj|BAJ45388.1| NAD-dependent DNA ligase LigB [Escherichia coli DH1] gi|332345636|gb|AEE58970.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 560 Score = 150 bits (379), Expect = 7e-34, Method: Composition-based stats. Identities = 107/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + E+ L V+ A+ + + + + + P+ DG+V + + Sbjct: 231 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL ++ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|254038848|ref|ZP_04872900.1| conserved hypothetical protein [Escherichia sp. 1_1_43] gi|290497|gb|AAA62000.1| f562 [Escherichia coli] gi|226838813|gb|EEH70840.1| conserved hypothetical protein [Escherichia sp. 1_1_43] Length = 562 Score = 150 bits (379), Expect = 7e-34, Method: Composition-based stats. Identities = 107/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 24 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 78 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + E+ L V+ A+ + + + + + P+ DG+V + + Sbjct: 233 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 287 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL ++ ++G+G Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLDGIG 434 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 484 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 532 RARQVIEWKENAQIKKL 548 >gi|193063789|ref|ZP_03044876.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E22] gi|192930504|gb|EDV83111.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E22] Length = 577 Score = 150 bits (378), Expect = 8e-34, Method: Composition-based stats. Identities = 109/616 (17%), Positives = 204/616 (33%), Gaps = 91/616 (14%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 39 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 92 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 93 ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 137 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 138 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 195 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 196 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 247 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 248 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 302 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 303 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 360 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ D++ Sbjct: 361 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAE------ 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P + + C Q + RL S+ ++G+G+ Sbjct: 404 -------------RTKPTPPENRFNSLTCYFASEVCQEQFISRLVWLGSKQVLGLDGIGE 450 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 ++ L Q +T G L+ N R Sbjct: 451 AGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARKQ 500 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 R++ ++GI A A S+ W L P G Sbjct: 501 PFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSGR 547 Query: 609 AQAIVEFYQNPRNICA 624 A+ + E+ +N + Sbjct: 548 ARQVTEWKENAQIKKL 563 >gi|172044492|sp|A8A6A9|LIGB_ECOHS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B Length = 560 Score = 150 bits (378), Expect = 9e-34, Method: Composition-based stats. Identities = 107/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDVYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + E+ L V+ A+ + + + + + P+ DG+V + + Sbjct: 231 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL ++ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|157163128|ref|YP_001460446.1| NAD-dependent DNA ligase LigB [Escherichia coli HS] gi|157068808|gb|ABV08063.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli HS] Length = 562 Score = 150 bits (378), Expect = 9e-34, Method: Composition-based stats. Identities = 107/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 24 CPAWSPARAQEEISRLQQQIKQWDDVYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 78 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + E+ L V+ A+ + + + + + P+ DG+V + + Sbjct: 233 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 287 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL ++ ++G+G Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLDGIG 434 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 484 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 532 RARQVIEWKENAQIKKL 548 >gi|332282582|ref|ZP_08394995.1| NAD-dependent DNA ligase LigB [Shigella sp. D9] gi|323944100|gb|EGB40180.1| NAD-dependent DNA ligase adenylation domain-containing protein [Escherichia coli H120] gi|332104934|gb|EGJ08280.1| NAD-dependent DNA ligase LigB [Shigella sp. D9] Length = 562 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 108/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+ L+Q+I DD Y++ K + D YD L R F Sbjct: 24 CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 78 ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 233 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 287 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 484 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 532 RARQVIEWKENAQIKKL 548 >gi|256021349|ref|ZP_05435214.1| NAD-dependent DNA ligase LigB [Shigella sp. D9] Length = 560 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 108/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+ L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 231 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|193070347|ref|ZP_03051289.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E110019] gi|192956286|gb|EDV86747.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E110019] Length = 577 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 108/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+ L+Q+I DD Y++ K + D YD L R F Sbjct: 39 CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 92 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 93 ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 137 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 138 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 195 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 196 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 247 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 248 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 302 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 303 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 360 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 361 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 395 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 396 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 449 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 450 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 499 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 500 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 546 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 547 RARQVIEWKENAQIKKL 563 >gi|187775663|ref|ZP_02992667.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4196] gi|188024760|ref|ZP_02997228.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4113] gi|189010103|ref|ZP_02804810.2| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4076] gi|189401811|ref|ZP_03006485.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4401] gi|189402714|ref|ZP_03006814.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4486] gi|189403713|ref|ZP_03007195.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4501] gi|189404723|ref|ZP_02810531.2| NAD-dependent DNA ligase adenylation domain [Escherichia coli O157:H7 str. EC869] gi|189405711|ref|ZP_03007918.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC508] gi|208809321|ref|ZP_03251658.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4206] gi|208814147|ref|ZP_03255476.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4045] gi|208820627|ref|ZP_03260947.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4042] gi|209397991|ref|YP_002273126.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4115] gi|217325818|ref|ZP_03441902.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. TW14588] gi|187771517|gb|EDU35361.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4196] gi|188016999|gb|EDU55121.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4113] gi|189002376|gb|EDU71362.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4076] gi|189358909|gb|EDU77328.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4401] gi|189364410|gb|EDU82829.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4486] gi|189369721|gb|EDU88137.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4501] gi|189374635|gb|EDU93051.1| NAD-dependent DNA ligase adenylation domain [Escherichia coli O157:H7 str. EC869] gi|189378779|gb|EDU97195.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC508] gi|208729122|gb|EDZ78723.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4206] gi|208735424|gb|EDZ84111.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4045] gi|208740750|gb|EDZ88432.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4042] gi|209159391|gb|ACI36824.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4115] gi|217322039|gb|EEC30463.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. TW14588] Length = 577 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 108/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+ L+Q+I DD Y++ K + D YD L R F Sbjct: 39 CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 92 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 93 ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 137 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 138 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 195 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 196 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 247 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 248 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 302 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ ++ I +G++G ++ VA L PV + + Sbjct: 303 EPESRHW--LPGQAEWLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDKKV 360 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 361 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 395 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 396 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 449 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 450 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 499 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 500 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 546 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 547 RARQVIEWKENAQIKKL 563 >gi|38704188|ref|NP_312549.2| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str. Sakai] gi|195936208|ref|ZP_03081590.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4024] gi|254795602|ref|YP_003080439.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str. TW14359] gi|261224170|ref|ZP_05938451.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str. FRIK2000] gi|261254780|ref|ZP_05947313.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str. FRIK966] gi|166226377|sp|Q8XD89|LIGB_ECO57 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|257096607|sp|B5YWE6|LIGB_ECO5E RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|254595002|gb|ACT74363.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str. TW14359] gi|320639554|gb|EFX09162.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str. G5101] gi|326337353|gb|EGD61188.1| DNA ligase , LigB [Escherichia coli O157:H7 str. 1044] Length = 560 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 108/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+ L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 231 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ ++ I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|13363997|dbj|BAB37945.1| putative enzyme [Escherichia coli O157:H7 str. Sakai] gi|209754570|gb|ACI75592.1| putative enzyme [Escherichia coli] gi|209754572|gb|ACI75593.1| putative enzyme [Escherichia coli] gi|209754576|gb|ACI75595.1| putative enzyme [Escherichia coli] Length = 562 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 108/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+ L+Q+I DD Y++ K + D YD L R F Sbjct: 24 CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 78 ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 233 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 287 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ ++ I +G++G ++ VA L PV + + Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 484 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 532 RARQVIEWKENAQIKKL 548 >gi|260846568|ref|YP_003224346.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O103:H2 str. 12009] gi|257761715|dbj|BAI33212.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O103:H2 str. 12009] Length = 560 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 109/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 231 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ + E+ +N + Sbjct: 530 RARQVTEWKENAQIKKL 546 >gi|194430072|ref|ZP_03062577.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli B171] gi|194411899|gb|EDX28216.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli B171] Length = 577 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 109/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 39 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 92 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 93 ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 137 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 138 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 195 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 196 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 247 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 248 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 302 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 303 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 360 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 361 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 395 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 396 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 449 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 450 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 499 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 500 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 546 Query: 608 IAQAIVEFYQNPRNICA 624 A+ + E+ +N + Sbjct: 547 RARQVTEWKENAQIKKL 563 >gi|291285018|ref|YP_003501836.1| DNA ligase B [Escherichia coli O55:H7 str. CB9615] gi|290764891|gb|ADD58852.1| DNA ligase B [Escherichia coli O55:H7 str. CB9615] gi|320644993|gb|EFX14023.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H- str. 493-89] gi|320650260|gb|EFX18749.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H- str. H 2687] gi|320655612|gb|EFX23540.1| NAD-dependent DNA ligase LigB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661346|gb|EFX28770.1| NAD-dependent DNA ligase LigB [Escherichia coli O55:H7 str. USDA 5905] gi|320666360|gb|EFX33359.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str. LSU-61] Length = 560 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 108/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+ L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 231 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|209754568|gb|ACI75591.1| putative enzyme [Escherichia coli] gi|209754574|gb|ACI75594.1| putative enzyme [Escherichia coli] Length = 562 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 108/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+ L+Q+I DD Y++ K + D YD L R F Sbjct: 24 CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 78 ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 233 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 287 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 484 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 532 RARQVIEWKENAQIKKL 548 >gi|289669579|ref|ZP_06490654.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 511 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 6/149 (4%) Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLV-GDIIAQAIVEFYQNPRNICAVEAL---LKEVS 633 Q A +++ A +L + V ++A A++++ P N A ++ V Sbjct: 362 QQLAAAVDSFAALRTAGADALQQ-AGVPAPVVA-ALLQWLDRPENAALASAAQQAMETVL 419 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 + + + ++ + +V TGTL + R A++ + LGA V+ +S+KT ++ G+ Sbjct: 420 ARLPEADALQTGPLDGQSVVITGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEE 479 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 GSKL+KAQ LGV I +E + L L ++ Sbjct: 480 AGSKLDKAQSLGVDIWDEARLLAFLSEHG 508 Score = 111 bits (278), Expect = 3e-22, Method: Composition-based stats. Identities = 105/362 (29%), Positives = 163/362 (45%), Gaps = 82/362 (22%) Query: 336 STRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI 395 T + I+IQIGRTG TPVARL+PV++ G ++TNATLHN D I L D+ Sbjct: 1 MTVVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNADQIARL-----------DV 49 Query: 396 RVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAA 455 RVGD V+V+RAG+VIP+V ++ ++R P Q + P+ CP+C S +VR+ A Sbjct: 50 RVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCPVCGSEIVREEG------QAV 103 Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL-------------DFFFKSEDPAF 502 RC+G L C AQ+ E +HFVSR A +++GLG++ + D + + D Sbjct: 104 WRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVQGVADIYLLTVDQLL 163 Query: 503 SIRIPADIFTLQRRQQTSTTK--------------------------------------- 523 +R+ + + + + Sbjct: 164 QLRMISTAESPHAFLREAREHLASGAYAQLETTVVGIGVDMAGEREVPPTWQADLLRAGL 223 Query: 524 ---IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580 N NL ++I R+ +LERF+F+LGI HVG A++L+ ++ + Sbjct: 224 PKFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEHVGESTAKALSAWFGDLELI 283 Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 W RVP +G +A+A+ F P N A++ LL+ H Sbjct: 284 RHLP----------WPLFKRVPDIGGEVARALGHFLDQPGNQQAIDDLLQRGVRIGDTHP 333 Query: 641 KN 642 + Sbjct: 334 PS 335 >gi|166226367|sp|Q3YW09|LIGB_SHISS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B Length = 560 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 109/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV + Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 231 LMTDRLKELATAGFTLTQRYTRAVKNADEIARVRNEWWKAKL-----PFVTDGVVVRAAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQRL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|74314119|ref|YP_312538.1| NAD-dependent DNA ligase LigB [Shigella sonnei Ss046] gi|73857596|gb|AAZ90303.1| putative enzyme [Shigella sonnei Ss046] Length = 562 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 109/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 24 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 78 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV + Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 233 LMTDRLKELATAGFTLTQRYTRAVKNADEIARVRNEWWKAKL-----PFVTDGVVVRAAK 287 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 484 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQRL---PGTGSG 531 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 532 RARQVIEWKENAQIKKL 548 >gi|290473319|ref|YP_003466185.1| DNA ligase [Xenorhabdus bovienii SS-2004] gi|289172618|emb|CBJ79387.1| DNA ligase (modular protein) [Xenorhabdus bovienii SS-2004] Length = 619 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 110/632 (17%), Positives = 206/632 (32%), Gaps = 95/632 (15%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E+ ++E+ L ++++ D Y Q I D YD L + + Sbjct: 51 EKIQREMQHLTRQMAEWDQLYRQQGISEIDDEFYDQLLEILTLWRTC-----LHQTSDS- 104 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 + K H + L K+ ++++ +++ W L+PK+ Sbjct: 105 TFSV-AVPREG--KQPHPVQHTGLNKLKGVKEIHQWLQGRSVVW-----------LQPKV 150 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +T+ YEKG+ V RG+G G + I IP+ + PE + ++GE++ Sbjct: 151 DGVAVTLVYEKGRLVGLISRGNGSEGTNWMDKSSFITDIPKQIKNA-PERLVLQGELFW- 208 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 N G R+ +G++ R + + F+ G A Sbjct: 209 ----QQDNHRQSVAGG---QGARSKVAGLMMRKSSAPELGQIGIFIWGWPDGPNEMA--- 258 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 L+++ +GFP F + LP+ DG+V + + Sbjct: 259 -VKLERLASMGFPTAQQY-SHRIFSAEDAEKRWSSYFIQPLPFATDGVVLRQET--EPTG 314 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 RA S W I+ K+ +Q T + D++ +IGRTG ++ + LE V + + L Sbjct: 315 RQWRAGSNSWAIAWKYPLQQQLTTVRDVNFKIGRTGRISVLLELEKVKLDDRQVRRVNL- 373 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 ++ GD+V V AG +PK+ ++ R + P+ Sbjct: 374 ----------GSVSRWRQWNVYPGDKVTVALAGHGVPKLDKVVW--RIAERPDIQPPNA- 420 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 S QQ + + N++G+G+ Sbjct: 421 -----------------QDFHSLSCLVSHDSCQQQFIARLTWLGENLNMQGIGQGTWAAL 463 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 K + D L Q + + G ++ + R L + Sbjct: 464 VKH----GLVTHLTDWLALDIAQ------LTEVPNIGIKRAELIFAQFQQARLQPLSSWR 513 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++G+ + A + + Q++ + + I Sbjct: 514 EAIGLPY---------ANRFTDEMGWQQDLLLSKTGAKNSLTT---------KQTAKIAA 555 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 F Q+P V AL E+N E Sbjct: 556 FLQHPEIKTLVHALTVHGIGEKQESEENTVGE 587 >gi|218509071|ref|ZP_03506949.1| NAD-dependent DNA ligase LigA [Rhizobium etli Brasil 5] Length = 275 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 147/267 (55%), Positives = 200/267 (74%), Gaps = 1/267 (0%) Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 GFPVN +++ N+ I+++Y+E+ R L YDIDG+VYKVD LQ++LG R+RSPRW Sbjct: 1 GFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVVYKVDSLELQQRLGFRSRSPRW 60 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384 +HKF +QA T + I+IQ+GRTG LTPVARL+P+ +GG ++TNATLHNEDYIKG+ Sbjct: 61 ATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITVGGVVVTNATLHNEDYIKGIGN 120 Query: 385 SGKVMRGG-RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443 SG+ +R DIR D V+V+RAG+VIP+++D+++ +R DA+ + FP CP+C S VR Sbjct: 121 SGERIRPEEHDIRERDTVIVQRAGDVIPQILDVVMEKRAADARSYEFPKTCPVCGSHAVR 180 Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503 ++N KTGK + RCTGG C AQ E LKHFVSR+AF+IEGLG +Q+DFFF++EDP+ Sbjct: 181 EVNEKTGKTDSVRRCTGGFICRAQATEHLKHFVSRNAFDIEGLGSKQVDFFFENEDPSLQ 240 Query: 504 IRIPADIFTLQRRQQTSTTKIENILGF 530 IR +IFTL++RQQ S TK+ENI GF Sbjct: 241 IRTAPEIFTLEKRQQDSLTKLENIDGF 267 >gi|226942521|ref|YP_002797594.1| NAD-dependent DNA ligase LigB [Azotobacter vinelandii DJ] gi|257096555|sp|C1DIC2|LIGB_AZOVD RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|226717448|gb|ACO76619.1| NAD-dependent DNA ligase [Azotobacter vinelandii DJ] Length = 560 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 108/607 (17%), Positives = 196/607 (32%), Gaps = 98/607 (16%) Query: 30 YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF-K 88 D Y++ + + D YD + R FP A + P E Sbjct: 46 QWDVAYHRDGRSPVADELYDQARARLADWNRCFPGQADA----SP------EPLAGSAGP 95 Query: 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148 + H +P L K+ + +R ++ W +PK+DG +T+ Y G+ Sbjct: 96 LLHPVPHTGLAKL-DEAAVRDWMATREDLWT-----------QPKVDGVAVTLEYADGRL 143 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208 A RGDG G+D +A +R +P +PR L+ + ++GE+Y + Sbjct: 144 RRAISRGDGRHGQDWTARVRRLPALPRQLAERR--RLILQGELYWRLPGHVQAEA----- 196 Query: 209 GRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268 A R A L+ D G+G + G +M ++ L Sbjct: 197 -GGRSARARVAGLLARDTLDDGDAA--------GIGLFVWDWPNGPADMRARLDGLERLG 247 Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 R+ + + + + P + + RA P W ++ Sbjct: 248 FAEARRYSRPVADFATARQWRERWYREPLPFASDGVVLRQGRRPPGERWRAEPPHWAVAW 307 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388 K+ QA + + +IGR+G +TP L+PV + I L Sbjct: 308 KYPLAQALAEVRAVRFRIGRSGRITPQLELQPVRLDDRQIRRVAL-----------GSLR 356 Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDAQPFSFPSFCPICQSRVVRDLN 446 D+R GD+V ++ AG+ IP+V ++ ER P C + Sbjct: 357 RWRELDVRPGDQVAIRLAGQSIPQVDAVVWRAAERPALPSPDPAAHHALSCWRPLPGCEE 416 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506 Q L RL R ++ G+G+ + ++ Sbjct: 417 --------------------QFLARLDWLGGRRGLDLRGVGRGTWEALLENGRLD----- 451 Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 L + ++ + GFG+ S + L + R ++ +LG+ G Sbjct: 452 -----DLLGWLELDEARLAELPGFGERSASLLAERFRAARRRPFPMWLRALGLPPAGEAT 506 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 + + + W P +G A+ + F+ +P + Sbjct: 507 -------------LPPSWDELAGRGPEQWQR---EPGIGPGRARQLQAFFAHPEVQALRQ 550 Query: 627 ALLKEVS 633 L Sbjct: 551 RLRAAGV 557 >gi|191167813|ref|ZP_03029619.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli B7A] gi|190902156|gb|EDV61899.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli B7A] Length = 562 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 109/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 24 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 78 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 123 -VQPKVDGVAVTMVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 233 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 287 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 484 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 532 RARQVIEWKENAQIKKL 548 >gi|204928646|ref|ZP_03219845.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322079|gb|EDZ07277.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 561 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 108/618 (17%), Positives = 215/618 (34%), Gaps = 91/618 (14%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E++ L+Q+++ +D Y++ + DS YD L R S P Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P H + + K+ + + + +++ ++PK Sbjct: 86 P-------PLNGTT--RHPVAHTGVRKLVDRQAVEQWMR-----------GRSELWVQPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y+ GK A RG+G GED + IR IP+IP+ ++GE+++ Sbjct: 126 VDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + +G N R+ +G+L R + L F+ + Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ + L + V+ A+ + + S LP+ DG+V ++ + + Sbjct: 237 LSQLAKAGFSLTKKYSLAVKNASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 W+ + K+ ++ I +G++G +T VA L PV + + + Sbjct: 292 HWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVMLDDKRVQRVNI 349 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP++ +++ R Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P + C Q + RL SR A ++G+G+ Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRA 439 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ + ++ +I N GF ++ N R R+ Sbjct: 440 LHQT----------HRFEHIFSWLALTSAQIANTPGFAKGKSEQIWRQFNLARRQPFTRW 489 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I ++ + A A S++ ++P G+ A ++ Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWR----------QLPSTGERRAGRVI 536 Query: 614 EFYQNPRNICAVEALLKE 631 ++ NP+ I A+ L Sbjct: 537 DWRDNPQ-IKALSRWLAA 553 >gi|170681126|ref|YP_001745947.1| NAD-dependent DNA ligase LigB [Escherichia coli SMS-3-5] gi|226737619|sp|B1LK84|LIGB_ECOSM RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|170518844|gb|ACB17022.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli SMS-3-5] Length = 560 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 111/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + R Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETRD 81 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 V H + + K+ + L ++ W Sbjct: 82 AMM---------PPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV + Sbjct: 179 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 231 LMTDRLKELATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|218702416|ref|YP_002410045.1| NAD-dependent DNA ligase LigB [Escherichia coli IAI39] gi|226737615|sp|B7NQ11|LIGB_ECO7I RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|218372402|emb|CAR20276.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI39] Length = 560 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 111/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + R Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETRD 81 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 V H + + K+ + L ++ W Sbjct: 82 AMM---------PPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV + Sbjct: 179 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 231 LMTDRLKELATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRHWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|332750605|gb|EGJ81013.1| NAD-dependent DNA ligase adenylation domain protein [Shigella flexneri 4343-70] Length = 556 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 110/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 18 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 71 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 72 ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 116 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 117 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 174 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV + Sbjct: 175 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 226 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 227 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 281 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 282 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 339 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 340 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 374 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R C C Q + RL S+ ++G+G Sbjct: 375 ------DVVWRGAERTKPTPPENRFNPLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 428 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N RN Sbjct: 429 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARN 478 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 479 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 525 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 526 RARQVIEWKENAQIKKL 542 >gi|166226369|sp|Q0SYH4|LIGB_SHIF8 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B Length = 560 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 110/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV + Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 231 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNPLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N RN Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARN 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|110807676|ref|YP_691196.1| NAD-dependent DNA ligase LigB [Shigella flexneri 5 str. 8401] gi|110617224|gb|ABF05891.1| putative enzyme [Shigella flexneri 5 str. 8401] Length = 562 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 110/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 24 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 78 ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV + Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 233 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 287 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R C C Q + RL S+ ++G+G Sbjct: 381 ------DVVWRGAERTKPTPPENRFNPLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N RN Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARN 484 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 532 RARQVIEWKENAQIKKL 548 >gi|153829889|ref|ZP_01982556.1| DNA ligase [Vibrio cholerae 623-39] gi|148874632|gb|EDL72767.1| DNA ligase [Vibrio cholerae 623-39] Length = 103 Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 2/103 (1%) Query: 619 PRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 RN + LL++ P++ V S + K +V TG+ ++ R+ A+ + LGA Sbjct: 1 DRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQALGAK 60 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V+ +S+ TDI+ G+ GSKL KA +LG+++ +E+ + L+ Sbjct: 61 VTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 103 >gi|331665272|ref|ZP_08366173.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli TA143] gi|331057782|gb|EGI29768.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli TA143] Length = 560 Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 107/612 (17%), Positives = 201/612 (32%), Gaps = 93/612 (15%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 27 PARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF---------GN 77 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 + V H + + K+ + L ++ W ++PK Sbjct: 78 ETRDVMMPPLNG--AVIHPVAHTGVRKMADKIALSLWMRERSDLW-----------VQPK 124 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y GK A RG+G GED + +R I +P+ +S ++GE+++ Sbjct: 125 VDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQGEIFL 183 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + + N R +G++ R + +D L FV ++ Sbjct: 184 KREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLMTDR 235 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E+ L V+ A+ + + + + K P+ DG+V + + + Sbjct: 236 LKELATAGFTLTQTYTRAVKNADEVARVRNAWWKAKL-----PFVTDGVVVRAAKEPESR 290 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 W+++ K+ + I +G++G ++ VA L PV + + + Sbjct: 291 HW--LPGQAEWLVAWKYQPVAQVVEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNI 348 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP++ Sbjct: 349 -----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID------------------- 378 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 + R + C C Q + RL S+ ++G+G+ Sbjct: 379 -DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIGEAGWR 437 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++ L Q +T G L+ N R R Sbjct: 438 ALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARKQPFTR 487 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 ++ ++GI A S+ W L P G A+ + Sbjct: 488 WVMAMGIPLTRVA---LNASDERSWSQLLLSTEQF-------WQQL---PGTGSGRARQV 534 Query: 613 VEFYQNPRNICA 624 +E+ +N + Sbjct: 535 IEWKENAQIKKL 546 >gi|298712196|emb|CBJ33067.1| DNA ligase, NAD-dependent [Ectocarpus siliculosus] Length = 1170 Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 159/467 (34%), Positives = 225/467 (48%), Gaps = 92/467 (19%) Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 + + F EPKIDG + YE G+FV AA RGDG GEDV+A A+ Sbjct: 387 GGEARAELCFVAEPKIDGLTCALLYEDGRFVRAATRGDGERGEDVTANALALGDAVIPHH 446 Query: 179 LN----------------------------------------IPEIIEVRGEVYISKNDF 198 L EVRGEV++S F Sbjct: 447 LPLSSAAAVAEGADGGAVPTREAEAAAAAAAAAERAPSSPVVPRGRFEVRGEVFMSDEAF 506 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL-------------- 243 LN+E A G +A+ RNAA+G LR+L+P R L FF +G Sbjct: 507 ERLNEEREAEGLPAFASARNAAAGSLRQLDPAVTRRRGLRFFAYGAAVGQERGRSASEEA 566 Query: 244 ------GKTSEIFAKGQYEMLQKMRCLGFPVNNGV-RQANTFHGIVSYYNEMKSIRSTLP 296 G Q +L + GF V + +V ++ + RS+L Sbjct: 567 AAAAVGGDALASAFGTQDALLTALEGWGFEVARPRLPPTVSADELVEFHRRLARERSSLG 626 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 Y +DG+VYK+D+ +LQ++LG AR+PRW ++HKF ++ T L +I IQ+GRTG LTPVA Sbjct: 627 YAVDGVVYKLDDLALQERLGASARAPRWAVAHKFGAEEGETVLSEIVIQVGRTGALTPVA 686 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 LEPV +GGA ++ ATLHN ++ L +R GDRV V+RAG+VIP+V+ + Sbjct: 687 VLEPVLLGGATVSRATLHNAREVEEL-----------GLRPGDRVKVRRAGDVIPQVLGL 735 Query: 417 IVNERH---------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467 D+ F+FP+ CP C + VV++ + A RC GL+C AQ Sbjct: 736 ASPPHPDSSSAGEGDDDSARFAFPTCCPACGTPVVKEEDK------AVTRCPAGLSCPAQ 789 Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ 514 +ERLKHFVS+ AF+I+GLG +L ++ A +R P D+ L+ Sbjct: 790 AVERLKHFVSKGAFDIQGLGPARLLELYE----AGIVRSPVDVLRLR 832 Score = 141 bits (354), Expect = 6e-31, Method: Composition-based stats. Identities = 65/233 (27%), Positives = 114/233 (48%), Gaps = 39/233 (16%) Query: 525 ENILGFGDVSVTNLYDSINKRRN-ISLERFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQ 582 E G+G +S N+ D++++ ++ +SL RFI+SLG+ VGA +A +A+ + ++ F Sbjct: 934 EGREGWGRLSARNVLDAVDRAKDGVSLGRFIYSLGVPLVGARMAEVIAEEFNGEFEAFWG 993 Query: 583 EINNIIAHNN------------DDWLSLIRVPLVGDIIAQAIVEF-YQNPRNICAVEALL 629 + + + +G + +++ F N VEAL Sbjct: 994 ALTRAGLPTPPKVVNGTGPTEPAAAEAFQGIQGMGPAMLASLLRFAKAENGNRPVVEALA 1053 Query: 630 KEVSPSIGRHEKNVSSE------------------------IENKKLVFTGTLQKIQRHK 665 EV S ++ +E K +VFTGTL +++R + Sbjct: 1054 SEVRFSARARRRHAGGGEWMVALDAVVRKGGGGGSAGGGAWVEGKTVVFTGTLTRMKRTE 1113 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 QE +LGA V+ +SRKTD+++VG NPG KLEKA++LGV++++EE++ + Sbjct: 1114 TQEAARELGARVTGSISRKTDMVVVGLNPGGKLEKARELGVEVVSEEEWYRRI 1166 Score = 89.5 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 47/138 (34%), Gaps = 42/138 (30%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS-- 85 I+ HD YY P + D+EYDAL+ R I AFP L RS + P +++G + Sbjct: 191 IAAHDVRYYLEDVPSVTDAEYDALRLRNGEIEAAFPSLVRS---DSPSSRVGAASTTTDM 247 Query: 86 -------------------------------------LFKVTHSIPTLSLEKIWNIEDLR 108 L V H SL+ +++ E Sbjct: 248 EALNNQQELPVAAAAATSDGEGGAAPAGPKASKRAARLPAVRHLRSLGSLDNVFDEEKAA 307 Query: 109 KFITRIYRFWQKKDDNSI 126 +F+ R+ R Sbjct: 308 EFVDRVRRAADVATLGEG 325 >gi|331685309|ref|ZP_08385895.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli H299] gi|331077680|gb|EGI48892.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli H299] Length = 561 Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 113/617 (18%), Positives = 208/617 (33%), Gaps = 92/617 (14%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGIYDQLSARLTQWQRCFGEETHR 81 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + PLN G V H + + K+ + L ++ W Sbjct: 82 DAMMPPLN--GA--------VIHPVAHTGVRKMADKIALSLWMRERSDLW---------- 121 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S ++ Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 179 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 180 GEIFLKREG--------HIQKQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 232 LMTDRLKELATAGFTLTQTYTRAVKNADEVARVRNAWWKTKL-----PFVTDGVVVRAAK 286 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVARVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 345 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 379 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 433 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 434 EAGWRSLHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 483 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 484 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLLSTEQF-------WQQL---PGTGSG 530 Query: 608 IAQAIVEFYQNPRNICA 624 + ++E+ +N + Sbjct: 531 RVRQVIEWKENAQIKKL 547 >gi|322612905|gb|EFY09857.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618970|gb|EFY15857.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625253|gb|EFY22080.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630079|gb|EFY26852.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634271|gb|EFY31006.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635828|gb|EFY32537.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642969|gb|EFY39547.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645038|gb|EFY41569.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649862|gb|EFY46285.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653069|gb|EFY49404.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661112|gb|EFY57340.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662399|gb|EFY58612.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667277|gb|EFY63443.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674346|gb|EFY70439.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678446|gb|EFY74507.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680952|gb|EFY76986.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687112|gb|EFY83085.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323198247|gb|EFZ83353.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200865|gb|EFZ85935.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206619|gb|EFZ91577.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210468|gb|EFZ95354.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216243|gb|EGA00971.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220466|gb|EGA04920.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225330|gb|EGA09564.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228444|gb|EGA12575.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234265|gb|EGA18353.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237250|gb|EGA21317.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244769|gb|EGA28773.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245856|gb|EGA29846.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250961|gb|EGA34837.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257291|gb|EGA40990.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262215|gb|EGA45776.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264574|gb|EGA48078.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268863|gb|EGA52321.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 561 Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats. Identities = 108/618 (17%), Positives = 214/618 (34%), Gaps = 91/618 (14%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E++ L+Q+++ +D Y++ + DS YD L R S P Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P H + + K+ + + + +++ ++PK Sbjct: 86 P-------PLNGTT--RHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y+ GK A RG+G GED + IR IP+IP+ ++GE+++ Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + +G N R+ +G+L R + L F+ + Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ + L V+ A+ + + S LP+ DG+V ++ + + Sbjct: 237 LSQLAKAGFSLTKKYTLAVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPAAQ 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 W+ + K+ ++ I +G++G +T VA L PV + + + Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP++ +++ R Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P + C Q + RL SR A ++G+G+ Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRA 439 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ + ++ +I N GF ++ N R R+ Sbjct: 440 LHQT----------HRFEHIFSWLALTSAQIANTPGFAKGKSEQIWRQFNLARRQPFTRW 489 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I ++ + A A S++ ++P G+ A ++ Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWR----------QLPSTGERRAGRVI 536 Query: 614 EFYQNPRNICAVEALLKE 631 ++ NP+ I A+ L Sbjct: 537 DWRDNPQ-IKALSRWLAA 553 >gi|188492181|ref|ZP_02999451.1| putative DNA ligase domain protein [Escherichia coli 53638] gi|188487380|gb|EDU62483.1| putative DNA ligase domain protein [Escherichia coli 53638] Length = 562 Score = 148 bits (372), Expect = 4e-33, Method: Composition-based stats. Identities = 109/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 24 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 78 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV + Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 233 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 287 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 346 QQVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 484 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 532 RARQVIEWKENAQIKKL 548 >gi|312967984|ref|ZP_07782195.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli 2362-75] gi|312287243|gb|EFR15152.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli 2362-75] Length = 561 Score = 148 bits (372), Expect = 4e-33, Method: Composition-based stats. Identities = 112/617 (18%), Positives = 208/617 (33%), Gaps = 92/617 (14%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGEETHR 81 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + PLN G V H + + K+ + L ++ W Sbjct: 82 DAMMPPLN--GA--------VIHPVAHTGVRKMADKIALSLWMRERSDLW---------- 121 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S ++ Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 179 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 180 GEIFLKREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 232 LMTDRLKELATAGFTLTQTYTRAVKNADEVARVRNAWWKTKL-----PFVTDGVVVRAAK 286 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + +I GD++LV AG+ IP++ Sbjct: 345 QRVNI-----------GSVRRWQEWNIAPGDQILVSLAGQGIPRID-------------- 379 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 433 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 434 EAGWRSLHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 483 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 484 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLLSTEQF-------WQQL---PGTGSG 530 Query: 608 IAQAIVEFYQNPRNICA 624 + ++E+ +N + Sbjct: 531 RVRQVIEWKENAQIKKL 547 >gi|323939593|gb|EGB35799.1| NAD-dependent DNA ligase adenylation domain-containing protein [Escherichia coli E482] Length = 562 Score = 148 bits (372), Expect = 4e-33, Method: Composition-based stats. Identities = 108/616 (17%), Positives = 207/616 (33%), Gaps = 91/616 (14%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 24 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 78 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N +G++ R + +D L FV + Sbjct: 181 GEIFLQREG--------HIQQQMGGINAHAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + E+ L V+ A+ + + + + + P+ DG+V + + Sbjct: 233 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 287 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ D++ Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTP 394 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 SF + A+ C Q + RL ++ ++G+G+ Sbjct: 395 PENSFNSLTC-------------YFASDVC------QEQFISRLVWLGAKQVLGLDGIGE 435 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 ++ L Q +T G L+ N R Sbjct: 436 AGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARKQ 485 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 R++ ++GI A A S+ W L P G Sbjct: 486 PFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSGR 532 Query: 609 AQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 533 ARQVIEWKENAQIKKL 548 >gi|323189446|gb|EFZ74727.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli RN587/1] Length = 561 Score = 148 bits (372), Expect = 4e-33, Method: Composition-based stats. Identities = 112/617 (18%), Positives = 208/617 (33%), Gaps = 92/617 (14%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + Sbjct: 22 CPAWSSARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGEETHR 81 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + PLN G V H + + K+ + L ++ W Sbjct: 82 DAMMPPLN--GA--------VMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 121 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S ++ Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 179 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV + Sbjct: 180 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + ++ L V+ A+ + + + + K P+ DG+V + + Sbjct: 232 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 286 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVMLDDKKV 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ++ DI GD++LV AG+ IP++ Sbjct: 345 QRVSI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 379 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL + ++G+G Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGLKQVLGLDGIG 433 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 434 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 483 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 484 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 530 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 531 RARQVIEWKENAQIKTL 547 >gi|207858976|ref|YP_002245627.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|226737622|sp|B5R5H2|LIGB_SALEP RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|206710779|emb|CAR35140.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 561 Score = 147 bits (371), Expect = 5e-33, Method: Composition-based stats. Identities = 108/618 (17%), Positives = 210/618 (33%), Gaps = 91/618 (14%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E++ L+Q+++ +D Y++ + DS YD L R S P Sbjct: 27 PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P H + + K+ + + + +++ ++PK Sbjct: 86 P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y+ GK A RG+G GED + IR IP+IP+ ++GE+++ Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + +G N R+ +G+L R + L F+ + Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ + L V+ A+ + + S LP+ DG+V ++ + + Sbjct: 237 LSQLAKAGFSLTNKYTLAVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 W+ + K+ ++ I +G++G +T VA L PV + + + Sbjct: 292 HWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP++ +++ R Sbjct: 350 D-----------SVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P + C Q + RL SR A ++G+G+ Sbjct: 393 -------------PPDSHFNSLTCFYASETCQEQFISRLVWLGSRSALGLDGMGEASWRA 439 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ + L Q +T GF ++ N R S R+ Sbjct: 440 LHQTHRF----KHIFSWLALTSAQIANT------PGFAKGKSEQIWRQFNLARRQSFTRW 489 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I ++ + A A S++ G+ A ++ Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536 Query: 614 EFYQNPRNICAVEALLKE 631 ++ NP+ I + L Sbjct: 537 DWRNNPQ-IKTLSRWLAA 553 >gi|326629797|gb|EGE36140.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 562 Score = 147 bits (370), Expect = 7e-33, Method: Composition-based stats. Identities = 108/618 (17%), Positives = 210/618 (33%), Gaps = 91/618 (14%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E++ L+Q+++ +D Y++ + DS YD L R S P Sbjct: 28 PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 86 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P H + + K+ + + + +++ ++PK Sbjct: 87 P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 126 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y+ GK A RG+G GED + IR IP+IP+ ++GE+++ Sbjct: 127 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 185 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + +G N R+ +G+L R + L F+ + Sbjct: 186 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 237 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ + L V+ A+ + + S LP+ DG+V ++ + + Sbjct: 238 LSQLAKAGFSLTNKYTLAVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 292 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 W+ + K+ ++ I +G++G +T VA L PV + + + Sbjct: 293 HWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 350 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP++ +++ R Sbjct: 351 D-----------SVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 393 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P + C Q + RL SR A ++G+G+ Sbjct: 394 -------------PPDSHFNSLTCFYASETCQEQFISRLVWLGSRSALGLDGMGEASWRA 440 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ + L Q +T GF ++ N R S R+ Sbjct: 441 LHQTHRF----KHIFSWLALTSAQIANT------PGFAKGKSEQIWRQFNLARRQSFTRW 490 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I ++ + A A S++ G+ A ++ Sbjct: 491 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWWQLPAT----------GERRAGRVI 537 Query: 614 EFYQNPRNICAVEALLKE 631 ++ NP+ I + L Sbjct: 538 DWRNNPQ-IKTLSRWLAA 554 >gi|205354659|ref|YP_002228460.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|226737623|sp|B5RG75|LIGB_SALG2 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|205274440|emb|CAR39472.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 561 Score = 147 bits (370), Expect = 7e-33, Method: Composition-based stats. Identities = 108/618 (17%), Positives = 210/618 (33%), Gaps = 91/618 (14%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E++ L+Q+++ +D Y++ + DS YD L R S P Sbjct: 27 PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P H + + K+ + + + +++ ++PK Sbjct: 86 P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y+ GK A RG+G GED + IR IP+IP+ ++GE+++ Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + +G N R+ +G+L R + L F+ + Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ + L V+ A+ + + S LP+ DG+V ++ + + Sbjct: 237 LSQLAKAGFSLTNKYTLAVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 W+ + K+ ++ I +G++G +T VA L PV + + + Sbjct: 292 HWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP++ +++ R Sbjct: 350 D-----------SVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P + C Q + RL SR A ++G+G+ Sbjct: 393 -------------PPDSHFNSLTCFYASETCQEQFISRLVWLGSRSALGLDGMGEASWRA 439 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ + L Q +T GF ++ N R S R+ Sbjct: 440 LHQTHRF----KHIFSWLALTSAQIANT------PGFAKGKSEQIWRQFNLARRQSFTRW 489 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I ++ + A A S++ G+ A ++ Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWWQLPAT----------GERRAGRVI 536 Query: 614 EFYQNPRNICAVEALLKE 631 ++ NP+ I + L Sbjct: 537 DWRNNPQ-IKTLSRWLAA 553 >gi|215488942|ref|YP_002331373.1| NAD-dependent DNA ligase LigB [Escherichia coli O127:H6 str. E2348/69] gi|254809143|sp|B7UM69|LIGB_ECO27 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|215267014|emb|CAS11459.1| conserved inner membrane protein [Escherichia coli O127:H6 str. E2348/69] Length = 561 Score = 147 bits (370), Expect = 8e-33, Method: Composition-based stats. Identities = 111/617 (17%), Positives = 207/617 (33%), Gaps = 92/617 (14%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGEETHR 81 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + PLN G V H + + K+ + L ++ W Sbjct: 82 DAMMPPLN--GA--------VIHPVAHTGVRKMADKIALSLWMRERSDLW---------- 121 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S ++ Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 179 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R + ++ R + +D L FV + Sbjct: 180 GEIFLKREG--------HIQQQMGGINARAKVADLMMRQDDSDTLNSLGVFVWAWPDGPQ 231 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 232 LMTDRLKELATAGFTLTQTYTRAVKNADEVARVRNAWWKTKL-----PFVTDGVVVRAAK 286 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + +I GD++LV AG+ IP++ Sbjct: 345 QRVNI-----------GSVRRWQEWNIAPGDQILVSLAGQGIPRID-------------- 379 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 433 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 434 EAGWRSLHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 483 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 484 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLLSTEQF-------WQQL---PGTGSG 530 Query: 608 IAQAIVEFYQNPRNICA 624 + ++E+ +N + Sbjct: 531 RVRQVIEWKENAQIKKL 547 >gi|197247797|ref|YP_002148670.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|226737620|sp|B5EXF2|LIGB_SALA4 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|197211500|gb|ACH48897.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 561 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 109/618 (17%), Positives = 211/618 (34%), Gaps = 91/618 (14%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E++ L+Q+++ +D Y++ + DS YD L R S P Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P H + + K+ + + + +++ ++PK Sbjct: 86 P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y+ GK A RG+G GED + IR IP+IP+ ++GE+++ Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + +G N R+ +G+L R + L F+ + Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ + L + V+ A+ + + S LP+ DG+V ++ + + Sbjct: 237 LSQLAKAGFSLTKKYSLVVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 W+ + K+ ++ I +G++G +T VA L PV + + + Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP++ +++ R Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P + C Q + RL SR A ++G+G+ Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRA 439 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ TL Q +T GF ++ N R S R+ Sbjct: 440 LHQTHRFE----HIFSWLTLTSAQIANT------PGFAKGKSEQIWRQFNLARRQSFTRW 489 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I ++ + A A S++ G+ A ++ Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536 Query: 614 EFYQNPRNICAVEALLKE 631 ++ NP+ I + L Sbjct: 537 DWRNNPQ-IKTLSRWLAA 553 >gi|281603010|gb|ADA75994.1| DNA ligase B [Shigella flexneri 2002017] Length = 562 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 109/617 (17%), Positives = 201/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 24 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 78 ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I + + +S ++ Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVLQTVSGP-LANSTLQ 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV + Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 233 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 287 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R C C Q + RL S+ ++G+G Sbjct: 381 ------DVVWRGAERTKPTPPENRFNPLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N RN Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARN 484 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 532 RARQVIEWKENAQIKKL 548 >gi|30065077|ref|NP_839248.1| NAD-dependent DNA ligase LigB [Shigella flexneri 2a str. 2457T] gi|56480394|ref|NP_709426.2| NAD-dependent DNA ligase LigB [Shigella flexneri 2a str. 301] gi|81839371|sp|Q83PM9|LIGB_SHIFL RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|30043338|gb|AAP19059.1| putative enzyme [Shigella flexneri 2a str. 2457T] gi|56383945|gb|AAN45133.2| putative enzyme [Shigella flexneri 2a str. 301] gi|332751117|gb|EGJ81520.1| NAD-dependent DNA ligase adenylation domain protein [Shigella flexneri 2747-71] Length = 560 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 109/617 (17%), Positives = 201/617 (32%), Gaps = 93/617 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I + + +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVLQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R +D L FV + Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 231 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNPLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N RN Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARN 482 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R++ ++GI A A S+ W L P G Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529 Query: 608 IAQAIVEFYQNPRNICA 624 A+ ++E+ +N + Sbjct: 530 RARQVIEWKENAQIKKL 546 >gi|161616820|ref|YP_001590785.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|189046593|sp|A9MVP4|LIGB_SALPB RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|161366184|gb|ABX69952.1| hypothetical protein SPAB_04639 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 561 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 106/618 (17%), Positives = 211/618 (34%), Gaps = 91/618 (14%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E++ L+Q+++ +D Y++ + DS YD L R S P Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P H + + K+ + + + +++ ++PK Sbjct: 86 P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y+ GK A RG+G GED + IR IP+IP+ ++GE+++ Sbjct: 126 VDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + +G N R+ +G+L R + L F+ + Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ + L + V+ A+ + + S LP+ DG+V ++ + + Sbjct: 237 LSQLAKAGFSLTKKYSLAVKNASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 W+ + K+ ++ I +G++G +T VA L PV + + + Sbjct: 292 HWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP++ +++ R Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P + C Q + RL SR A ++G+G+ Sbjct: 393 -------------PPDSHFNSLTCFYASETCQEQFISRLVWLGSRSALGLDGMGEASWRA 439 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ + ++ +I N GF ++ N R R+ Sbjct: 440 LHQT----------HRFEHIFSWLALTSAQIANTPGFAKGKSEQIWRQFNLARRQPFTRW 489 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I ++ + A A S++ G+ A ++ Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536 Query: 614 EFYQNPRNICAVEALLKE 631 ++ NP+ I + L Sbjct: 537 DWRDNPQ-IKTLSRWLAA 553 >gi|255019090|ref|ZP_05291216.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL F2-515] Length = 99 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 38/106 (35%), Positives = 51/106 (48%), Gaps = 7/106 (6%) Query: 52 KRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI 111 + I A P+ P P ++GGE+ KV H P LSL +N EDL F Sbjct: 1 MQELLKIEEAHPEWV---TPESPSKRVGGEVLEGFKKVAHDTPMLSLANAFNHEDLADFD 57 Query: 112 TRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157 RI K + I + E KIDG ++++YE GK+ A RGDG Sbjct: 58 RRIRD----KVGDDIAYMCELKIDGLAVSLQYENGKYKQGATRGDG 99 >gi|149928190|ref|ZP_01916435.1| DNA ligase [Limnobacter sp. MED105] gi|149823081|gb|EDM82321.1| DNA ligase [Limnobacter sp. MED105] Length = 93 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 30/85 (35%), Positives = 45/85 (52%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 P+ + S K V TGTL + R +A + G V+ +S+KTD ++ G+ Sbjct: 9 PAEETQTTDESHPFFGKTFVLTGTLSQYSRDEAGALIVARGGKVTGSVSKKTDYLLAGEA 68 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLL 718 GSKLEKA LGV +++E F +L Sbjct: 69 AGSKLEKATALGVAVLDESTFQGML 93 >gi|162139527|ref|YP_218649.2| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224585537|ref|YP_002639336.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|166226375|sp|Q57I94|LIGB_SALCH RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|254809146|sp|C0Q1X9|LIGB_SALPC RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|224470065|gb|ACN47895.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322716720|gb|EFZ08291.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 561 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 106/618 (17%), Positives = 210/618 (33%), Gaps = 91/618 (14%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E++ L+Q+++ +D Y++ + DS YD L R S P Sbjct: 27 PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P H + + K+ + + + +++ ++PK Sbjct: 86 P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y+ GK A RG+G GED + IR IP+IP+ ++GE+++ Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + +G N R+ +G+L R + L F+ + Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ + L V+ A+ + + S LP+ DG+V ++ + + Sbjct: 237 LSQLAKAGFSLTNKYTLAVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 W+ + K+ ++ I +G++G +T VA L PV + + + Sbjct: 292 HWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP++ +++ R Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P + C Q + RL SR A ++G+G+ Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRA 439 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ + ++ +I N GF ++ N R R+ Sbjct: 440 LHQT----------HRFEHIFSWLALTSAQIANTPGFAKGKSEQIWRQFNLARRQPFTRW 489 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I ++ + A A S++ G+ A ++ Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536 Query: 614 EFYQNPRNICAVEALLKE 631 ++ NP+ I + L Sbjct: 537 DWRDNPQ-IKTLSRWLAA 553 >gi|168241918|ref|ZP_02666850.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205339075|gb|EDZ25839.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 561 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 106/618 (17%), Positives = 211/618 (34%), Gaps = 91/618 (14%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E++ L+Q+++ +D Y++ + DS YD L R S P Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P H + + K+ + + + +++ ++PK Sbjct: 86 P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y+ GK A RG+G GED + IR IP+IP+ ++GE+++ Sbjct: 126 VDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQSTQGA-LANAVLQGEIFL 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + +G N R+ +G+L R + L F+ + Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ + L + V+ A+ + + S LP+ DG+V ++ + + Sbjct: 237 LSQLAKAGFSLTKKYSLVVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 W+ + K+ ++ I +G++G +T VA L PV + + + Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP++ +++ R Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P + C Q + RL SR A ++G+G+ Sbjct: 393 -------------PPDSHFNSLTCFYASETCQEQFISRLVWLGSRSALGLDGMGEASWRA 439 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ + ++ +I N GF ++ N R R+ Sbjct: 440 LHQT----------HRFEHIFSWLALTSAQIANTPGFAKGKSEQIWRQFNLARRQPFTRW 489 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I ++ + A A S++ G+ A ++ Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536 Query: 614 EFYQNPRNICAVEALLKE 631 ++ NP+ I + L Sbjct: 537 DWRDNPQ-IKTLSRWLAA 553 >gi|197263258|ref|ZP_03163332.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197241513|gb|EDY24133.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 561 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 109/618 (17%), Positives = 211/618 (34%), Gaps = 91/618 (14%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E++ L+Q+++ +D Y++ + DS YD L R S P Sbjct: 27 PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P H + + K+ + + + +++ ++PK Sbjct: 86 P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y+ GK A RG+G GED + IR IP+IP+ ++GE+++ Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + +G N R+ A+G+L R + L F+ + Sbjct: 185 QREG-----HIQQRMGGM---NARSKAAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ + L + V+ A+ + + S LP+ DG+V ++ + + Sbjct: 237 LSQLAKAGFSLTKKYSLVVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 W+ + K+ ++ I +G++G +T VA L PV + + + Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP++ +++ R Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRDRSKPV------ 392 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P + C Q + RL SR A ++G+G+ Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRA 439 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ TL Q +T GF ++ N R R+ Sbjct: 440 LHQTHRFE----HIFSWLTLTSAQIANT------PGFAKGKSEQIWRQFNLARRQPFTRW 489 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I ++ + A A S++ G+ A ++ Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536 Query: 614 EFYQNPRNICAVEALLKE 631 ++ NP+ I + L Sbjct: 537 DWRNNPQ-IKTLSRWLAA 553 >gi|198244266|ref|YP_002217699.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|226737621|sp|B5FM71|LIGB_SALDC RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|197938782|gb|ACH76115.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326625484|gb|EGE31829.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 561 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 107/618 (17%), Positives = 212/618 (34%), Gaps = 91/618 (14%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E++ L+Q+++ +D Y++ + DS YD L R S P Sbjct: 27 PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P H + + K+ + + + +++ ++PK Sbjct: 86 P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y+ GK A RG+G GED + IR IP+IP+ ++GE+++ Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + +G N R+ A+G+L R + L F+ + Sbjct: 185 QREG-----HIQQRMGGM---NARSKAAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ + L + V+ A+ + + S LP+ DG+V ++ + + Sbjct: 237 LSQLAKAGFSLTKKYSLAVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 W+ + K+ ++ I +G++G +T VA L PV + + + Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP++ +++ R Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P + C Q + RL SR A ++G+G+ Sbjct: 393 -------------PPDSHFNSLTCFYASETCQEQFISRLVWLGSRSALGLDGMGEASWRA 439 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ + ++ +I N GF ++ N R R+ Sbjct: 440 LHQT----------HRFEHIFSWLALTSAQIANTPGFAKGKSEQIWRQFNLARRQPFTRW 489 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I ++ + A A S++ G+ A ++ Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536 Query: 614 EFYQNPRNICAVEALLKE 631 ++ NP+ I + L Sbjct: 537 DWRDNPQ-IKTLSRWLAA 553 >gi|238910220|ref|ZP_04654057.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 561 Score = 146 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 106/618 (17%), Positives = 211/618 (34%), Gaps = 91/618 (14%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E++ L+Q+++ +D Y++ + DS YD L R S P Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P H + + K+ + + + +++ ++PK Sbjct: 86 P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y+ GK A RG+G GED + IR IP+IP+ ++GE+++ Sbjct: 126 VDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + +G N R+ +G+L R + L F+ + Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ + L + V+ A+ + + S LP+ DG+V ++ + + Sbjct: 237 LSQLAKAGFSLTKKYSLAVKNASEVERARQSW-----LTSALPFVTDGVVIRMAKEPAAQ 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 W+ + K+ ++ I +G++G +T VA L PV + + + Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP++ +++ R Sbjct: 350 -----------GSVKRWKAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P + C Q + RL SR A ++G+G+ Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRA 439 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ + ++ +I N GF ++ N R R+ Sbjct: 440 LHQT----------HRFEHIFSWLALTSAQIANTPGFAKGKSEQIWRQFNLARRQPFTRW 489 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I ++ + A A S++ G+ A ++ Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536 Query: 614 EFYQNPRNICAVEALLKE 631 ++ NP+ I + L Sbjct: 537 DWRNNPQ-IKTLSRWLAA 553 >gi|16767024|ref|NP_462639.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|81853648|sp|Q8ZL42|LIGB_SALTY RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|16422307|gb|AAL22598.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|312914765|dbj|BAJ38739.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 561 Score = 146 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 108/618 (17%), Positives = 209/618 (33%), Gaps = 91/618 (14%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E++ L+Q+++ +D Y++ + DS YD L R S P Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P H + + K+ + + + +++ ++PK Sbjct: 86 P-------PLNGTT--MHPVAHTGVRKLVDRQAVEQWMR-----------GRSELWVQPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y+ GK A RG+G GED + IR IP+IP+ ++GE+++ Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + +G N R+ +G+L R + L F+ + Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ + L V+ A+ + + S LP+ DG+V ++ + + Sbjct: 237 LSQLAKAGFSLTNKYTLAVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 W+ + K+ ++ I +G++G +T VA L PV + + + Sbjct: 292 HWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP++ +++ R Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P + C Q + RL SR A ++G+G+ Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLIWLGSRSALGLDGMGEASWRA 439 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ TL Q +T GF ++ N R R+ Sbjct: 440 LHQTHRFE----HIFSWLTLTSAQIANT------PGFAKGKSEQIWRQFNLARRQPFTRW 489 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I ++ + A A S++ G+ A ++ Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536 Query: 614 EFYQNPRNICAVEALLKE 631 ++ N + I A+ L Sbjct: 537 DWRNNLQ-IKALSRWLAA 553 >gi|59897249|gb|AAX12044.1| DNA ligase [Enterobacteria phage T5] Length = 323 Score = 146 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 90/400 (22%), Positives = 151/400 (37%), Gaps = 86/400 (21%) Query: 25 EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84 ++ I + YYQ +I D EYD L +R + IG + Sbjct: 5 KEFIKRCQEAYYQ-GMSLISDEEYDRLVKRF-PLEEE----------------IGPK--- 43 Query: 85 SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144 + H SL+K++ Y K N + K+DG I++ Y Sbjct: 44 --GDIPHLYRMYSLQKVY------------YNRGDKPPFNPLGQVETDKLDGCAISLLYI 89 Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204 G+FV A RG+G G DV++ +R + ++ ++ GEV I+K Sbjct: 90 NGEFVQALTRGNGILGNDVTSNVRLLNIPKKISQKVP---TQITGEVLITKEV------- 139 Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDITRYL-----NFFVHGLGKTSEIFAKGQYEMLQ 259 N RN ASG + + D + + F +G+ Sbjct: 140 ---------ENKRNFASGAINLKDSDDFVQRIGEGGLIFVAYGI---------------- 174 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 + + + + ++ + DG V ++++ + G Sbjct: 175 QCSAESVGITEAYLKDMLWLENENFLTVVNVRSFFKWIPTDGKVVRINDNHQFFREGWTN 234 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 + PR + K E+ T L ++ Q+G +G +TPV EPV I A I ATL+N DYI Sbjct: 235 KFPRGAFAIKEDEEGEITTLTKVEWQVGASGKVTPVGYFEPVIIDDATIVKATLNNVDYI 294 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 L D+ +G ++ V RAG VIP +V+ + + Sbjct: 295 NSL-----------DLEIGCQIRVIRAGGVIPCIVERVYD 323 >gi|167995212|ref|ZP_02576302.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205327077|gb|EDZ13841.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261248887|emb|CBG26741.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996002|gb|ACY90887.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160276|emb|CBW19799.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|321226792|gb|EFX51842.1| DNA ligase, LigB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132100|gb|ADX19530.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990588|gb|AEF09571.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 561 Score = 146 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 108/618 (17%), Positives = 209/618 (33%), Gaps = 91/618 (14%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E++ L+Q+++ +D Y++ + DS YD L R S P Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P H + + K+ + + + +++ ++PK Sbjct: 86 P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y+ GK A RG+G GED + IR IP+IP+ ++GE+++ Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + +G N R+ +G+L R + L F+ + Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ + L V+ A+ + + S LP+ DG+V ++ + + Sbjct: 237 LSQLAKAGFSLTNKYTLAVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 W+ + K+ ++ I +G++G +T VA L PV + + + Sbjct: 292 HWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP++ +++ R Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P + C Q + RL SR A ++G+G+ Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLIWLGSRSALGLDGMGEASWRA 439 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ TL Q +T GF ++ N R R+ Sbjct: 440 LHQTHRFE----HIFSWLTLTSAQIANT------PGFAKGKSEQIWRQFNLARRQPFTRW 489 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I ++ + A A S++ G+ A ++ Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536 Query: 614 EFYQNPRNICAVEALLKE 631 ++ N + I A+ L Sbjct: 537 DWRNNLQ-IKALSRWLAA 553 >gi|194449070|ref|YP_002047770.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|226737624|sp|B4T9Z1|LIGB_SALHS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|194407374|gb|ACF67593.1| NAD-dependent DNA ligase domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] Length = 561 Score = 146 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 106/618 (17%), Positives = 211/618 (34%), Gaps = 91/618 (14%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E++ L+Q+++ +D Y++ + DS YD L R S P Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P H + + K+ + + + +++ ++PK Sbjct: 86 P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y+ GK A RG+G GED + IR IP+IP+ ++GE+++ Sbjct: 126 VDGVAVTLLYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQSTQGA-LANAVLQGEIFL 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + +G N R+ +G+L R + L F+ + Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ + L + V+ A+ + + S LP+ DG+V ++ + + Sbjct: 237 LSQLAKAGFSLTKKYSLVVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 W+ + K+ ++ I +G++G +T VA L PV + + + Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP++ +++ R Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P + C Q + RL SR A ++G+G+ Sbjct: 393 -------------PPDSHFNSLTCFYASETCQEQFISRLVWLGSRSALGLDGMGEASWRA 439 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ + ++ +I N GF ++ N R R+ Sbjct: 440 LHQT----------HRFEHIFSWLALTSAQIANTPGFAKGKSEQIWRQFNLARRQPFTRW 489 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I ++ + A A S++ G+ A ++ Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536 Query: 614 EFYQNPRNICAVEALLKE 631 ++ NP+ I + L Sbjct: 537 DWRDNPQ-IKTLSRWLAA 553 >gi|167549012|ref|ZP_02342771.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325606|gb|EDZ13445.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 561 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 107/618 (17%), Positives = 212/618 (34%), Gaps = 91/618 (14%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E++ L+Q+++ +D Y++ + DS YD L R S P Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P H + + K+ + + + +++ ++PK Sbjct: 86 P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y+ GK A RG+G GED + IR IP+IP+ ++GE+++ Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + +G N R+ +G+L R + L F+ + Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ + L + V+ A+ + + S LP+ DG+V ++ + + Sbjct: 237 LSQLAKAGFSLTKKYSLVVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 W+ + K+ ++ I +G++G +T VA L PV + + + Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP++ +++ R Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P + C Q + RL SR A ++G+G+ Sbjct: 393 -------------PPDSHFNSLTCFYASETCQEQFISRLVWLGSRSALGLDGMGEASWRA 439 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ + ++ +I N LGF ++ N R R+ Sbjct: 440 LHQT----------HRFEHIFSWLALTSAQIANTLGFAKGKSEQIWRQFNLARRQPFTRW 489 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I ++ + A A S++ G+ A ++ Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536 Query: 614 EFYQNPRNICAVEALLKE 631 ++ NP+ I + L Sbjct: 537 DWRDNPQ-IKTLSRWLAA 553 >gi|168464952|ref|ZP_02698844.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195632322|gb|EDX50806.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 561 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 108/618 (17%), Positives = 210/618 (33%), Gaps = 91/618 (14%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E++ L+Q+++ +D Y++ + DS YD L R S P Sbjct: 27 PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P H + + K+ + + + +++ ++PK Sbjct: 86 P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y+ GK A RG+G GED + IR IP+IP+ ++GE+++ Sbjct: 126 VDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQSTQGA-LANAVLQGEIFL 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + +G N R+ +G+L R + L F+ + Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ + L + V+ A+ + + S LP+ DG+V ++ + + Sbjct: 237 LSQLAKAGFSLTKKYSLVVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 W+ + K+ ++ I +G++G +T VA L PV + + + Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP++ +++ R Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P + C Q + RL SR A ++G+G+ Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRA 439 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ TL Q +T GF ++ N R R+ Sbjct: 440 LHQTHRFE----HIFSWLTLTSAQIANT------PGFAKGKSEQIWRQFNLARRQPFTRW 489 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I ++ + A A S++ G+ A ++ Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536 Query: 614 EFYQNPRNICAVEALLKE 631 ++ NP+ I + L Sbjct: 537 DWRNNPQ-IKTLSRWLAA 553 >gi|182682929|ref|YP_001837053.1| NAD-dependent DNA ligase subunit A [Enterobacteria phage EPS7] gi|182630641|gb|ACB97573.1| NAD-dependent DNA ligase subunit A [Enterobacteria phage EPS7] Length = 323 Score = 144 bits (364), Expect = 3e-32, Method: Composition-based stats. Identities = 90/395 (22%), Positives = 148/395 (37%), Gaps = 76/395 (19%) Query: 25 EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84 ++ I + YYQ +I D EYD L +R + IG + Sbjct: 5 KEFIKRCQEAYYQ-GMSLISDEEYDRLIKRF-PLEEE----------------IGPK--- 43 Query: 85 SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144 + H SL+K++ Y K N + K+DG I++ Y Sbjct: 44 --GDIPHLYRMYSLQKVY------------YGRGDKAPFNPLGQVETDKLDGCAISLLYI 89 Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204 G+FV A RG+G G DV+ ++ + + ++ GEV I+K Sbjct: 90 NGEFVQALTRGNGILGNDVTHNVKMLNIPKTISQKVP---TQITGEVLITKEV------- 139 Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264 N RN ASG + + D G G + Q Sbjct: 140 ---------ENKRNYASGAINLKDSDD-----FIQRIGEGGLIFVAYGIQCS------AE 179 Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 + + + ++ + DG V ++++ + + G + PR Sbjct: 180 TVGITEAYLKDMLWLENENFLTVVNVRSFFKWIPTDGKVVRINDNNKFFREGWTNKFPRG 239 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384 + K E+ T L+ ++ Q+G +G +TPV EPV I A I ATL+N DYI L Sbjct: 240 AFAIKEDEEGEITTLVKVEWQVGASGKVTPVGYFEPVIIDDATIVKATLNNVDYINAL-- 297 Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 D+ +G ++ V RAG VIP +V+ + + Sbjct: 298 ---------DLEIGCQIRVIRAGGVIPCIVERVYD 323 >gi|46401852|ref|YP_006944.1| NAD-dependent DNA ligase, subunit A [Enterobacteria phage T5] gi|45775030|gb|AAS77162.1| NAD-dependent DNA ligase, subunit A [Enterobacteria phage T5] gi|51512054|gb|AAU05253.1| NAD-dependent DNA ligase subunit A [Enterobacteria phage T5] Length = 323 Score = 144 bits (364), Expect = 4e-32, Method: Composition-based stats. Identities = 90/400 (22%), Positives = 152/400 (38%), Gaps = 86/400 (21%) Query: 25 EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84 ++ I + YYQ +I D EYD L +R + IG + Sbjct: 5 KEFIKRCQEAYYQ-GMSLISDEEYDRLVKRF-PLEEE----------------IGPK--- 43 Query: 85 SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144 + H SL+K++ Y K N + K+DG I++ Y Sbjct: 44 --GDIPHLYRMYSLQKVY------------YNRGDKPPFNPLGQVETDKLDGCAISLLYI 89 Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204 G+FV A RG+G G DV++ +R + ++ ++ GEV I+K Sbjct: 90 NGEFVQALTRGNGILGNDVTSNVRLLNIPKKISQKVP---TQITGEVLITKEV------- 139 Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDITRYL-----NFFVHGLGKTSEIFAKGQYEMLQ 259 N RN ASG + + D + + F +G+ Sbjct: 140 ---------ENKRNFASGAINLKDSDDFVQRIGEGGLIFVAYGI---------------- 174 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 + + + + ++ + DG V ++++ + + G Sbjct: 175 QCSAESVGITEAYLKDMLWLENENFLTVVNVRSFFKWIPTDGKVVRINDNNKFFREGWTN 234 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 + PR + K E+ T L ++ Q+G +G +TPV EPV I A I ATL+N DYI Sbjct: 235 KFPRGAFAIKEDEEGEITTLTKVEWQVGASGKVTPVGYFEPVIIDDATIVKATLNNVDYI 294 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 L D+ +G ++ V RAG VIP +V+ + + Sbjct: 295 NSL-----------DLEIGCQIRVIRAGGVIPCIVERVYD 323 >gi|168235353|ref|ZP_02660411.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734322|ref|YP_002116682.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|226737627|sp|B4TZZ8|LIGB_SALSV RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|194709824|gb|ACF89045.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291581|gb|EDY30933.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 561 Score = 144 bits (363), Expect = 5e-32, Method: Composition-based stats. Identities = 108/618 (17%), Positives = 212/618 (34%), Gaps = 91/618 (14%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E++ L+Q+++ +D Y++ + DS YD L R S P Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P H + + K+ + + + +++ ++PK Sbjct: 86 P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y+ GK A RG+G GED + IR IP+IP+ ++GE+++ Sbjct: 126 VDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + +G N R+ +G+L R + L F+ + Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ + L V+ A+ + + S LP+ DG+V ++ + + Sbjct: 237 LSQLAKAGFSLTKKYTLAVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPAAQ 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 W+ + K+ ++ I +G++G +T VA L PV + + + Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP++ +++ R Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P + C Q + RL SR A ++G+G+ Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRA 439 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ + ++ +I N GF ++ N R S R+ Sbjct: 440 LHQT----------HRFEHIFSWLALTSAQIANTPGFAKGKSEQIWRQFNLARRQSFTRW 489 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I ++ + A A S++ G+ A ++ Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536 Query: 614 EFYQNPRNICAVEALLKE 631 ++ NP+ I A+ L Sbjct: 537 DWRDNPQ-IKALSRWLSA 553 >gi|56415629|ref|YP_152704.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364556|ref|YP_002144193.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81821323|sp|Q5PC41|LIGB_SALPA RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|226737626|sp|B5BI22|LIGB_SALPK RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|56129886|gb|AAV79392.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096033|emb|CAR61620.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 561 Score = 144 bits (363), Expect = 5e-32, Method: Composition-based stats. Identities = 107/618 (17%), Positives = 212/618 (34%), Gaps = 91/618 (14%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E++ L+Q+++ +D Y++ + DS YD L R S P Sbjct: 27 PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P H + + K+ + + + +++ ++PK Sbjct: 86 P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWVR-----------GRSELWVQPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y+ GK A RG+G GED + IR IP+IP+ ++GE+++ Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + +G N R+ A+G+L R + L F+ + Sbjct: 185 QREG-----HIQQRMGGM---NARSKAAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ + L + V+ A+ + + S LP+ DG+V ++ + + Sbjct: 237 LSQLAKAGFSLTKKYSLAVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 W+ + K+ ++ I +G++G +T VA L PV + + + Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP++ +++ R Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P + C Q + RL SR A ++G+G+ Sbjct: 393 -------------PPGSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRA 439 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ + ++ +I N G ++ R S R+ Sbjct: 440 LHQT----------HRFEHIFSWLALTSAQIANTPGVAKGKSEQIWRQFYLARRQSFTRW 489 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I ++ + A A S++ G+ A ++ Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536 Query: 614 EFYQNPRNICAVEALLKE 631 ++ NP+ I A+ L Sbjct: 537 DWRNNPQ-INALSRWLAA 553 >gi|168260506|ref|ZP_02682479.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205350522|gb|EDZ37153.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 561 Score = 144 bits (363), Expect = 5e-32, Method: Composition-based stats. Identities = 109/618 (17%), Positives = 211/618 (34%), Gaps = 91/618 (14%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E++ L+Q+++ +D Y++ + DS YD L R S P Sbjct: 27 PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P H + + K+ + + + +++ ++PK Sbjct: 86 P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y+ GK A RG+G GED + IR IP+IP+ ++GE+++ Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + +G N R+ A+G+L R + L F+ + Sbjct: 185 QREG-----HIQQRMGGM---NARSKAAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ + L + V+ A+ + + S LP+ DG+V ++ + + Sbjct: 237 LSQLAKAGFSLTKKYSLVVKNASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 W+ + K+ ++ I +G++G +T VA L PV + + + Sbjct: 292 HWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP++ +++ Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSCERSKPV------ 392 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P + C Q + RL SR A ++G+G+ Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRA 439 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ TL Q +T GF ++ N R S R+ Sbjct: 440 LHQTHRFE----HIFSWLTLTSAQIANT------PGFAKGKSEQIWRQFNLARRQSFTRW 489 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I ++ + A A S++ G+ A ++ Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536 Query: 614 EFYQNPRNICAVEALLKE 631 ++ NP+ I + L Sbjct: 537 DWRNNPQ-IKTLSRWLAA 553 >gi|168233263|ref|ZP_02658321.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194470644|ref|ZP_03076628.1| NAD-dependent DNA ligase adenylation domain [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194457008|gb|EDX45847.1| NAD-dependent DNA ligase adenylation domain [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332601|gb|EDZ19365.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 561 Score = 143 bits (361), Expect = 8e-32, Method: Composition-based stats. Identities = 109/618 (17%), Positives = 211/618 (34%), Gaps = 91/618 (14%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E++ L+Q+++ +D Y++ + DS YD L R S P Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P H + + K+ + + + +++ ++PK Sbjct: 86 P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y+ GK A RG+G GED + IR IP+IP+ ++GE+++ Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + +G N R+ +G+L R + L F+ + Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASTLNSLGIFIWAWPDGPANMPER 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ + L + V+ A+ + + S LP+ DG+V ++ + + Sbjct: 237 LSQLAKAGFSLTNKYSLAVKNASEVERARQSW-----LTSALPFVTDGVVIRMAKEPAAQ 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 W+ + K+ ++ I +G++G +T VA L PV + + + Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP++ +++ R Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P + C Q + RL SR A ++G+G+ Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRA 439 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ TL Q +T GF ++ N R S R+ Sbjct: 440 LHQTHRFE----HIFSWLTLTSAQIANT------PGFAKGKSEQIWRQFNLARRQSFTRW 489 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I ++ + A A S++ G+ ++ Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRVGRVI 536 Query: 614 EFYQNPRNICAVEALLKE 631 ++ NP+ I A+ L Sbjct: 537 DWRDNPQ-INALSRWLAA 553 >gi|183597041|ref|ZP_02958534.1| hypothetical protein PROSTU_00276 [Providencia stuartii ATCC 25827] gi|188023700|gb|EDU61740.1| hypothetical protein PROSTU_00276 [Providencia stuartii ATCC 25827] Length = 570 Score = 143 bits (361), Expect = 8e-32, Method: Composition-based stats. Identities = 92/439 (20%), Positives = 159/439 (36%), Gaps = 50/439 (11%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 LS ++ +KE L +++ + Y + D YD L +L+ Sbjct: 41 CSTLSQDELKKESQKLGEQLQQWNRLYRLSGNSPVTDETYDQLLNTWQQWQKC-QNLSGQ 99 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P I + V H I L+K+ N D+ K+I W Sbjct: 100 LPP------IHLPPHS--RTVKHPIVHTGLKKL-NEVDIGKWIDTREEVW---------- 140 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 L+PK+DG I++ Y++GK V RG+G G + IP IP+ L + P++I ++ Sbjct: 141 -LQPKVDGVAISLVYQQGKLVSMISRGNGIEGLEWRDKADFIPAIPKQLPTSQPQLI-LQ 198 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE++ D N RN +G L R + Sbjct: 199 GELFWRLKD--------HRQQASGGVNARNQVAGWLMR---KSKPVTPEANIDVFIWAWP 247 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E +++ LGFP+ T V + + +P+ DG+V K Sbjct: 248 EGVGKAEEQWRQLANLGFPLTQQYSHKVTTMAQVKKWQSY-YYQQPMPFATDGIVLKS-- 304 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F + + W ++ K + ++++ D+ ++GRTG ++ VA +EPV + + Sbjct: 305 FPTPRVAAWQVNHNSWSVAWKHPYTRIASKVTDLHFRVGRTGAVSVVAEIEPVELDSKKV 364 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV---DIIVNERHPDA 425 + L +D+ VGD + V AG IPK+ + +PD Sbjct: 365 SRLYL-----------GSLKSWQKKDLLVGDTIQVALAGHGIPKLESVIWRLQQRTYPDL 413 Query: 426 QPFSFPSFCPICQSRVVRD 444 F + Sbjct: 414 SQFKQFHALSCFVMTPQCE 432 >gi|196234149|ref|ZP_03132982.1| DNA ligase (NAD(+)) [Chthoniobacter flavus Ellin428] gi|196221800|gb|EDY16337.1| DNA ligase (NAD(+)) [Chthoniobacter flavus Ellin428] Length = 122 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 3/95 (3%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + + L Q++ H+ YY + P I D++YDAL R + A P+ P+ Sbjct: 1 MPNVQTRIEELRQQLEEHNRRYYDEATPTISDADYDALFRELRDLEDAHPEFI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLR 108 P ++G + +V H++P LSL+ ++ E LR Sbjct: 58 PTRRVGEKATAGFRQVRHAVPMLSLDNLFAKEGLR 92 >gi|200387460|ref|ZP_03214072.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604558|gb|EDZ03103.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 561 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 108/618 (17%), Positives = 210/618 (33%), Gaps = 91/618 (14%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E++ L+Q+++ +D Y++ + DS YD L R S P Sbjct: 27 PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P H + + K+ + + + +++ ++PK Sbjct: 86 P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y+ GK A RG+G GED + IR IP+IP+ ++GE+++ Sbjct: 126 VDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQSTQGA-LANAVLQGEIFL 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + +G N R+ +G+L R + L F+ + Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ + L + V+ A+ + + S LP+ DG+V ++ + + Sbjct: 237 LSQLAKAGFSLTKKYSLVVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 W+ + K+ ++ I +G++G +T VA L PV + + + Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP++ +++ R Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P + C Q + RL SR A ++G+G+ Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLIWLGSRSALGLDGMGEASWRA 439 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ TL Q +T GF ++ N R R+ Sbjct: 440 LHQTHRFE----HIFSWLTLTSAQIANT------PGFAKGKSEQIWRQFNLARRQPFTRW 489 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I ++ + A A S++ G+ A ++ Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536 Query: 614 EFYQNPRNICAVEALLKE 631 ++ N + I A+ L Sbjct: 537 DWRNNLQ-IKALSRWLAA 553 >gi|161505725|ref|YP_001572837.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189046592|sp|A9MKM6|LIGB_SALAR RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|160867072|gb|ABX23695.1| hypothetical protein SARI_03901 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 561 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 106/614 (17%), Positives = 210/614 (34%), Gaps = 93/614 (15%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +E++ L+Q+++ +D Y++ + DS YD L + S P P Sbjct: 32 EEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSAKLVQWQRCVGQDVSS-TPVSP---- 86 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 TH + + K+ + + + +++ F ++PK+DG Sbjct: 87 ---PLNGTT--THPVAHTGVRKLADRQAVAQWMR-----------GHSEFWVQPKVDGVA 130 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 +T+ Y+ GK A RG+G GED + IR I +IP+ ++GE+++ Sbjct: 131 VTLVYQNGKLTRAISRGNGLQGEDWTQKIRQISSIPQTTRGA-LANAVLQGEIFL----- 184 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +G N R+ +G+L R T L F+ + ++ Sbjct: 185 QLKGHIQQRMGGM---NARSKVAGMLMRQKNTSALNSLGIFIWAWPDGPANMTERLSQLA 241 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + L + V+ A+ + + S LP+ DG+V ++ + + Sbjct: 242 KAGFSLTQKYSQMVKNASEVERARRSW-----LTSALPFVTDGVVIRMAKEPSSQYWRPG 296 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 W+ + K+ ++ I +G++G ++ +A L PV + + + Sbjct: 297 QGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKISVIASLVPVMLDDKRVKRVNI----- 349 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 DI GD++LV AG+ IP++ +++ R Sbjct: 350 ------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV----------- 392 Query: 439 SRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 G + C C Q + RL SR A ++G+G+ ++ Sbjct: 393 ---------PPGNHFNSLTCFYASATCQEQFISRLVWLGSRAALGLDGMGEASWRALHQT 443 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + + +I N GF ++ N R R++ ++ Sbjct: 444 ----------HRFEHIFSWLALTPAEIANTPGFAKGKSELIWRQFNLARRQPFSRWVMAM 493 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 + A A S++ + G+ A + ++ Sbjct: 494 ---DIPLTQAALQASGDRSWEQLLMRTDQHWRQLPAT----------GERRAGRVSDWRD 540 Query: 618 NPRNICAVEALLKE 631 NPR I A+ L Sbjct: 541 NPR-IKALSRWLAA 553 >gi|168818429|ref|ZP_02830429.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205344676|gb|EDZ31440.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320088159|emb|CBY97921.1| DNA ligase Polydeoxyribonucleotide synthase [NAD+] [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 561 Score = 143 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 106/618 (17%), Positives = 211/618 (34%), Gaps = 91/618 (14%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E++ L+Q+++ +D Y++ + DS YD L R S P Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P H + + K+ + + + +++ ++PK Sbjct: 86 P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWIQPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y+ GK A RG+G GED + IR IP+IP+ ++GE+++ Sbjct: 126 VDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + +G N R+ +G+L R + L F+ + Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ + L + V+ A+ + + S LP+ DG+V ++ + + Sbjct: 237 LSQLAKAGFSLTKKYSLAVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPAAQ 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 W+ + K+ ++ I +G++G +T VA L PV + + + Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP++ +++ R Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P + C Q + RL SR A ++G+G+ Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRA 439 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ + ++ +I N GF ++ N R R+ Sbjct: 440 LHQT----------HRFEHIFSWLALTSAQIANTPGFAKGKSEQIWRQFNLARRQPFTRW 489 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I ++ + A A S++ G+ A ++ Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536 Query: 614 EFYQNPRNICAVEALLKE 631 ++ N + I A+ L Sbjct: 537 DWRNNLQ-IKALSRWLAA 553 >gi|324019686|gb|EGB88905.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 117-3] Length = 450 Score = 143 bits (359), Expect = 2e-31, Method: Composition-based stats. Identities = 81/411 (19%), Positives = 154/411 (37%), Gaps = 49/411 (11%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+ L V+ A+ + + + + K P+ DG+V + + Sbjct: 231 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 + DI GD++LV AG+ IP++ D++ Sbjct: 344 QRVNI-----------GSVRRWEEWDIAPGDQILVSLAGQGIPRIDDVVWR 383 >gi|149911106|ref|ZP_01899733.1| DNA ligase, NAD-dependent, putative [Moritella sp. PE36] gi|149805856|gb|EDM65845.1| DNA ligase, NAD-dependent, putative [Moritella sp. PE36] Length = 413 Score = 141 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 84/405 (20%), Positives = 158/405 (39%), Gaps = 53/405 (13%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP--L 75 + +S LE +I H YY P++ D E+D L ++H P Sbjct: 50 QHRISYLETQIIKHRRIYYAGQTPLLHDGEFDLLVDELTVLSHCL----------SPVLT 99 Query: 76 NKIGGEMNLSLFKVT----HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 GG + + + H LSL + + KF ++ Sbjct: 100 QIGGGNLQHNDTRQRDRQPHRQQMLSLNSVRERTAVDKFYQ---------LHQDQQLLIQ 150 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK DG I + YEKG V A+ RGDG G+D+ A + + + P + + GE+ Sbjct: 151 PKFDGMAIELVYEKGMLVGASSRGDGKQGKDLLAL--MLRSNAVNSMIAYPYTLVIHGEL 208 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250 Y+ + D+ Y + R+ +GI +L+P L F + Sbjct: 209 YVGQQDWQLRGK---------YVSSRHMTAGIASQLSPAQTDVMSLRFMPWRWIDSPYN- 258 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E++ + + + ++ + ++T + +DG+V K+ + Sbjct: 259 ----NELMGLAQLAMLGFADMSKMSHVIDRPQDIDYWLAHYQNTEAFLLDGIVLKLANNT 314 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+Q G +PRW ++ KF + + ++DI Q+G++G +TP+ ++P+ + G +T Sbjct: 315 LQRQYGHTQHAPRWALALKFTGPKGLSNVIDITYQVGKSGRVTPIIHVQPLALSGRQVTR 374 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 + + I VG +V ++ G P++ Sbjct: 375 VSG-----------RSQPWLLQSKIEVGSQVEIELVGNATPQLTR 408 >gi|194445315|ref|YP_002042988.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|226737625|sp|B4SXE9|LIGB_SALNS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|194403978|gb|ACF64200.1| NAD-dependent DNA ligase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 561 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 108/618 (17%), Positives = 210/618 (33%), Gaps = 91/618 (14%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E++ L+Q+++ +D Y++ + DS YD L R S P Sbjct: 27 PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P H + + K+ + + + +++ ++PK Sbjct: 86 P-------PLNGTT--MHPVAHTGVRKLADRQVVEQWMR-----------GRSELWVQPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y+ GK A RG+G GED + IR IP+IP+ ++GE+++ Sbjct: 126 VDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQSTQGA-LANAVLQGEIFL 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 + +G N R+ +G+L R + L F+ + Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ + L + V+ A+ + + S LP+ DG+V ++ + + Sbjct: 237 LSQLAKAGFSLTKKYSLVVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 W+ + K+ ++ I +G++G +T VA L PV + + + Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 DI GD++LV AG+ IP++ +++ R Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P + C Q + RL SR A ++G+G+ Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLIWLGSRSALGLDGMGEASWRA 439 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ TL Q +T GF ++ N R R+ Sbjct: 440 LHQTHRFE----HIFSWLTLTSAQIANT------PGFAKGKSEQIWRQFNLARRQPFTRW 489 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I ++ + A A S++ G+ A ++ Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536 Query: 614 EFYQNPRNICAVEALLKE 631 ++ N + I A+ L Sbjct: 537 DWRNNLQ-IKALSRWLAA 553 >gi|330883607|gb|EGH17756.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea str. race 4] Length = 94 Score = 141 bits (354), Expect = 6e-31, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 47/90 (52%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696 + + + V TG+L+++ R A+E + LGA VS +S KT ++ G GS Sbjct: 5 SEKKTVEGLPLAGQTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGS 64 Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 KL KA +LG+ +++E+ L L + + Sbjct: 65 KLTKANELGLTVLDEDALLKRLTELGVAVD 94 >gi|238755583|ref|ZP_04616920.1| DNA ligase B [Yersinia ruckeri ATCC 29473] gi|238706183|gb|EEP98563.1| DNA ligase B [Yersinia ruckeri ATCC 29473] Length = 569 Score = 141 bits (354), Expect = 6e-31, Method: Composition-based stats. Identities = 103/629 (16%), Positives = 198/629 (31%), Gaps = 104/629 (16%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRC-------DAIAHA 61 S + E++ +E++ D Y+Q +I D YD L +R A+ A Sbjct: 24 CPEWSEHELVTEIAKMEEQFGQWDKAYHQQGNSLIDDDIYDQLHQRLSHWKSCVKALEPA 83 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 + KVTH + L+K+ ++I W Sbjct: 84 VNSHITALAGVS-------------DKVTHPVAHTGLKKLTGNLAASEWILARKNLW--- 127 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 ++PK+DG +T+ Y +G RGDG G+D + + I IP L Sbjct: 128 --------VQPKVDGVAVTLTYLQGHLTQVISRGDGVRGQDWTDKAQYISAIP-SLISPA 178 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVH 241 P ++ + GE+++ +D + G A+ A + I ++ + Sbjct: 179 PPLLVLHGELFLRVHDHRQKDS----GGINARASVAGALMRKSPSSLLSQIGVFIWAWPD 234 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G E P+ + + + +S LP+ DG Sbjct: 235 GPASMVEKLRTLHRMGFTLSEEFSVPITSFT---------DAVHWRKIWFQSPLPFVTDG 285 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V + +E + W I+ K+ Q ++ ++ IGRTG ++ V L P+ Sbjct: 286 IVIRQEEEPAGHYWQSQPGY--WSIAWKYPPFQQMAQVKSVNFTIGRTGKISAVLHLSPI 343 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + +KG++ ++ GD+V+V AG+ IP++ + Sbjct: 344 KLDDKW-----------VKGVNLGTVARWKRWNVLPGDQVIVSLAGQGIPRLDKVAWRVD 392 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE--RLKHFVSRD 479 D +++ C + + RL R Sbjct: 393 KRD-------------------EISTPDMDQFHTFSCFRRESTLCETQFIARLTWLSGRS 433 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 ++ G+ L + + I + G G+V +Y Sbjct: 434 GLDMLGISSGIWQALTAHGLMG----------DLASWLELTPEIIATVPGIGEVKANKIY 483 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 K + ++ +LG + + +WL++ Sbjct: 484 LQFQKAKTRPFISWLAALGFPKAAIN------------PRVPKTWAALQQQPRGEWLTMA 531 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 +G + I EF +P + E L Sbjct: 532 N---IGAGRLKQITEFTTHPEMLQLAERL 557 >gi|326633001|ref|YP_004306590.1| NAD-dependent DNA ligase subunit A [Enterobacteria phage SPC35] gi|321272195|gb|ADW80087.1| NAD-dependent DNA ligase subunit A [Enterobacteria phage SPC35] Length = 323 Score = 139 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 92/397 (23%), Positives = 152/397 (38%), Gaps = 86/397 (21%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 I + YYQ +I D EYD L +R + IG + Sbjct: 8 IKRCQEAYYQ-GMSLISDEEYDRLIKRF-PLEEE----------------IGPK-----G 44 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 + H SL+K++ Y K N + K+DG I++ Y G+ Sbjct: 45 DIPHLYRMYSLQKVY------------YNRGDKPPFNPLGQVETDKLDGCAISLLYINGE 92 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 FV A RG+G G DV++ +R + ++ ++ GEV I+K Sbjct: 93 FVQALTRGNGILGNDVTSNVRLLNIPKKISQKVP---TQITGEVLITKEV---------- 139 Query: 208 VGRKPYANPRNAASGILRRLNPTDITRYL-----NFFVHGLGKTSEIFAKGQYEMLQKMR 262 N RN ASG + + D + + F +G+ + Sbjct: 140 ------ENKRNFASGAINLKDSDDFVQRIGEGGLIFVAYGI----------------QCS 177 Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322 + + + ++ + DG V ++++ + + G +SP Sbjct: 178 AESVGITEAYLKDMLWLENENFLTVVNVRSFFKWIPTDGKVVRINDNNKFFREGWTNKSP 237 Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382 R + K E+ T L ++ G +G +TPV EPV I A+IT ATL+N DYI L Sbjct: 238 RGAFAIKEDEEGEITTLTKVEWATGASGKITPVGYFEPVIIDDAVITKATLNNVDYINSL 297 Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 D+ +G ++ V RAG VIPK+V+ + + Sbjct: 298 -----------DLEIGCQIRVIRAGGVIPKIVERVYD 323 >gi|32396677|gb|AAP49295.1| NAD-dependent DNA ligase [Meiothermus ruber] Length = 99 Score = 139 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 6/104 (5%) Query: 45 DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWN 103 D+EYD L + A+ A P+L P+ P +G + + V H SL ++ Sbjct: 1 DAEYDRLLQELRALEEAHPELII---PDSPTQTVGSAILETPFTPVPHPTRMYSLGNAFS 57 Query: 104 IEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 +D+ F I RF +++ + LE KIDG + + YE+G Sbjct: 58 QDDIADFEASINRFLGREESR--EYVLEYKIDGLSVNLIYEEGV 99 >gi|320177344|gb|EFW52346.1| DNA ligase , LigB [Shigella dysenteriae CDC 74-1112] Length = 508 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 95/556 (17%), Positives = 184/556 (33%), Gaps = 80/556 (14%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+ +Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEIFRQQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + E+ L V+ A+ + + + + + P+ DG+V + + Sbjct: 231 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 285 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L V + + Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLASVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + DI GD++LV AG+ IP++ Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487 + R + C C Q + RL S+ ++G+G Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ L Q +T G L+ N R Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482 Query: 548 ISLERFIFSLGIRHVG 563 R++ ++GI Sbjct: 483 QPFTRWVMAMGIPLTR 498 >gi|291086421|ref|ZP_06571502.1| NAD-dependent DNA ligase adenylation domain protein [Citrobacter youngae ATCC 29220] gi|291068208|gb|EFE06317.1| NAD-dependent DNA ligase adenylation domain protein [Citrobacter youngae ATCC 29220] Length = 519 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 105/602 (17%), Positives = 212/602 (35%), Gaps = 93/602 (15%) Query: 30 YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89 +D Y++ + D YD L + F D + S+ P+N + Sbjct: 3 RWNDSYWKQGVSAVDDGVYDQLNAQLTQWQRCFGDDSSSDLSTPPIN----------GTI 52 Query: 90 THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149 H +P + K+ + + L++++ R+ ++PK+DG +T+ Y G V Sbjct: 53 AHPVPHTGVRKLADKQALQQWM-RVRSDL----------WVQPKVDGVAVTLVYRHGNLV 101 Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209 A RG+G GED + + IP++P ++GE+++ G Sbjct: 102 RAISRGNGLKGEDWTQKVLLIPSVPHTTKGL-LANSTLQGEIFL-----QQEGHVQQQRG 155 Query: 210 RKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVN 269 N R+ +G++ R + ++ R L F+ + ++ ++ Sbjct: 156 GM---NARSKVAGMMMRQSNPELLRSLAIFIWAWPDGPAVMSERLAQLTAAGFSFAQRYT 212 Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329 V+ A+ + + S LP+ DG+V + + W+ + K Sbjct: 213 QAVKNADDVEHARARWW-----TSALPFVTDGVVVRSG--KEPQARYWVPGQGDWLAAWK 265 Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389 + + + DI +G++G + VA L PV + + + Sbjct: 266 YPPVAQVSEVTDIQFSVGKSGKIAVVALLAPVMLDDKRVQRVNI-----------GSVRR 314 Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449 DI GDR+L+ AG+ IP++ +++ S P Sbjct: 315 WNEWDIAPGDRILISLAGQGIPRIDEVVWR-------------------STQRTKPKPPE 355 Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509 G+ + C Q + RL +++ +EG+G+ + A+ Sbjct: 356 GRFNSMTCFYATPECYEQFIARLVWLGAKEVLELEGIGEAGWRELHQ----AYRFEHIFS 411 Query: 510 IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569 L + Q ST + ++ N R++ R++ ++GI A Sbjct: 412 WLGLTQEQLQSTLGVSKGE--------KIWHQFNLSRHLPFTRWVIAMGI---PLTQATL 460 Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629 A S+Q D S ++P +G+ + ++++ R I A+ L Sbjct: 461 NASRDDSWQQLQD----------RDEQSWRQLPSMGERRTRRVIQWL-EDREITALSNWL 509 Query: 630 KE 631 Sbjct: 510 AA 511 >gi|159487072|ref|XP_001701559.1| predicted protein [Chlamydomonas reinhardtii] gi|158271500|gb|EDO97317.1| predicted protein [Chlamydomonas reinhardtii] Length = 623 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 69/251 (27%), Positives = 108/251 (43%), Gaps = 35/251 (13%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + LE ++ H + Y+ P I D+ YD LKRR +A L + +G Sbjct: 1 MKLLEAALTKHRELYFNQ-TPEISDAAYDELKRRFRDLAAR---LRGVAAED-VAFPVGA 55 Query: 81 EMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI---FFTLEPKID 135 + +L KV H++P SL + + +++ ++ R + + + +EPK+D Sbjct: 56 PVAAASALRKVKHTVPMTSLAAVNSRQEVEAWMGRTLARLAQLRQGAAGSWGWVVEPKVD 115 Query: 136 GTMITIRYEK-----------GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-- 182 G + + Y + + AA RGDG GEDV+ L +P Sbjct: 116 GLAVRVVYRRVAKGDGGGGAAYELQEAATRGDGEVGEDVTHNALHGGIQGLPLRFTMPPG 175 Query: 183 -----------EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD 231 E +EVRGEVY+ D +N E A G +AN RNAASG LR L+P + Sbjct: 176 AATSAPTSAAPEWVEVRGEVYVRIADLQQVNKEAEAAGGSGFANARNAASGGLRLLDPAE 235 Query: 232 ITRYL-NFFVH 241 R +F + Sbjct: 236 CRRRRLSFVAY 246 Score = 67.1 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 8/70 (11%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + ++ TGTL+ + GA + T +++VG + GSK ++A + GV Sbjct: 557 VAGMRICVTGTLE--------AMLEASGAEFHKDVKSDTQVLVVGADAGSKRDRAAKKGV 608 Query: 707 KIMNEEQFLF 716 ++M E F Sbjct: 609 RVMEERDFWQ 618 Score = 53.3 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 73/233 (31%), Gaps = 22/233 (9%) Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL---ACSAQQ 468 +V+ ++ R P AQP++ P+ CP C V + C CSAQQ Sbjct: 281 EVMRVLPELRPPGAQPWALPACCPACGGPVRLQP-AASKDAGEQLLCVAAEQGAGCSAQQ 339 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 L HF GL + + + + + Sbjct: 340 ERMLLHFAKV-CLKGSGLAAGVMQALTAAGLLEGGLPDFYTRLD--------RATLSALP 390 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 GFG + + +++ + L I+ VG A++L Y + Sbjct: 391 GFGAARAEAIAARVAASKSMRSAELLHGLNIKSVGETAAKALGVAYPRL---------VP 441 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 W + +G +++Q + + + P N ++ L + + Sbjct: 442 ELQRASWQEIKAASGLGQVVSQNVETWMRQPANQQLLQRLSQAGVACVASAPA 494 >gi|270700816|ref|ZP_06223057.1| DNA ligase [Haemophilus influenzae HK1212] gi|270315848|gb|EFA27948.1| DNA ligase [Haemophilus influenzae HK1212] Length = 152 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 56/152 (36%), Positives = 85/152 (55%), Gaps = 3/152 (1%) Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL+ ++ + F+ RI + F EPK+DG ++I Y G+ AA R Sbjct: 1 MLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPKLDGLAVSILYVNGELTQAATR 59 Query: 155 GDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 GDG +GED++A IR I +P ++L+ N P +EVRGEV++ F LN + K + Sbjct: 60 GDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHAGFERLNKYALEHNEKTF 119 Query: 214 ANPRNAASGILRRLNPTDITRYL-NFFVHGLG 244 ANPRNAA+G LR+L+P ++ +G+G Sbjct: 120 ANPRNAAAGSLRQLDPNITSKRPLVLNAYGIG 151 >gi|213024998|ref|ZP_03339445.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 262 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 114/285 (40%), Positives = 173/285 (60%), Gaps = 27/285 (9%) Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 +DIDG+V KV+ +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG Sbjct: 5 MPHAGFDIDGVVIKVNSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGA 64 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARLEPV + G L++NATLHN D I+ L +R+GD+V+++RAG+VIP Sbjct: 65 ITPVARLEPVQVAGVLVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIP 113 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV+++++ER + +P FP+ CP+C S V R A RCTGGL C AQ+ E Sbjct: 114 QVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKES 167 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 LKHFVSR A +++G+G + +D + E + PAD+F L K+ + G Sbjct: 168 LKHFVSRRAMDVDGMGDKIIDQLVERE----YVHTPADLFRLTA------GKLTGLDRMG 217 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576 S N+ +++ K + + RF+++LGIR VG A LA Y+ + Sbjct: 218 PKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGT 262 >gi|332089533|gb|EGI94637.1| NAD-dependent DNA ligase adenylation domain protein [Shigella boydii 3594-74] Length = 417 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 77/411 (18%), Positives = 152/411 (36%), Gaps = 49/411 (11%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+ +Q+I DD Y++ K + D YD L R F Sbjct: 11 CPAWSPARAQEEIFRQQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 64 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 65 ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 109 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 110 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 167 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 168 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 219 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + E+ L V+ A+ + + + + + P+ DG+V + + Sbjct: 220 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 274 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L V + + Sbjct: 275 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLASVMLDDKKV 332 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 + DI GD++LV AG+ IP++ D++ Sbjct: 333 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWR 372 >gi|320185697|gb|EFW60455.1| DNA ligase , LigB [Shigella flexneri CDC 796-83] Length = 411 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 77/411 (18%), Positives = 152/411 (36%), Gaps = 49/411 (11%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+ +Q+I DD Y++ K + D YD L R F Sbjct: 5 CPAWSPARAQEEIFRQQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 59 ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 103 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 104 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 161 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+++ + + N R +G++ R + +D L FV + Sbjct: 162 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 213 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + E+ L V+ A+ + + + + + P+ DG+V + + Sbjct: 214 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 268 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + W+++ K+ + I +G++G ++ VA L V + + Sbjct: 269 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLASVMLDDKKV 326 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 + DI GD++LV AG+ IP++ D++ Sbjct: 327 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWR 366 >gi|268592261|ref|ZP_06126482.1| DNA ligase B [Providencia rettgeri DSM 1131] gi|291312038|gb|EFE52491.1| DNA ligase B [Providencia rettgeri DSM 1131] Length = 574 Score = 134 bits (336), Expect = 7e-29, Method: Composition-based stats. Identities = 102/589 (17%), Positives = 191/589 (32%), Gaps = 69/589 (11%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALK------RRCDAIAHA 61 P E + + +E L +++ + Y I D YD L +RC + Sbjct: 41 PCEKQNSKIISQESHRLGKQLQLWNQAYRLAGSSSISDEAYDQLFNLWRSLQRCQQLPEE 100 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 P+ + + H IP L+K+ N ++ +I W Sbjct: 101 LPE-VLLPEKSQLTM--------------HPIPHTGLKKL-NELEVYSWIETRKNIW--- 141 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 L+PK+DG +T+ Y+ GK + RG+ G + A IP IP + Sbjct: 142 --------LQPKVDGVAVTLVYKNGKLISMISRGNSVEGIEWRAKADFIPAIP--KQIKY 191 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVH 241 ++ ++GE++ N + N RN +G L R N + Sbjct: 192 SGMLVLQGELFWRMNG--------HIQAKSGGVNARNKIAGWLMRKNEPTALEE---NIG 240 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 L + +GFP+ + I + + LP+ DG Sbjct: 241 IFIWAWPAGDANPKTQLTLLSEIGFPLAEQY-SHKIENKIQAKQLREYYYQGQLPFATDG 299 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V K F L +++ W I+ K+ + + + + IGRTG ++ VA + P+ Sbjct: 300 IVLKN--FPAPAALAWQSKQNSWAIAWKYPLRSVLSEVTKLQFNIGRTGRISVVASITPI 357 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 NI I+ RD+ VGD++LV +G PK+ D+I Sbjct: 358 NIDSKTISKVNA-----------GSLSSWEKRDLLVGDKILVSLSGLGSPKIEDVIWRR- 405 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 + + + S S + A G + + + Sbjct: 406 --EEREYPETSTLKQFHSLSCLTYTEVCSQQFVARLTWLGKQLRMRGISEATWRQWVENH 463 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 N+ L + + ++ + + Q S + G Sbjct: 464 NLTRLTTWLSEQWQSDLSKGKKHQMLVKQLKMAKDQPISLW----LKGLAIPLTKLQVGK 519 Query: 542 INKRRNISLERFIFSLGIRH-VGAEIARSLAK-YYLSYQNFAQEINNII 588 + + ++ S+ + ++A LA+ S ++ I Sbjct: 520 VTDIGMLYDPSWVNSINLTKLQKKKLANWLAEPEIESILRILSDMKAIQ 568 >gi|37926542|pdb|1L7B|A Chain A, Solution Nmr Structure Of Brct Domain Of T. Thermophilus: Northeast Structural Genomics Consortium Target Wr64tt Length = 92 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%) Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700 + ++ V TG L + R + + + +LGA V+ +SRKT ++VG+NPGSKLEK Sbjct: 2 EKGGEALKGLTFVITGELSR-PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEK 60 Query: 701 AQQLGVKIMNEEQFLFLLQ 719 A+ LGV + EE+ LL+ Sbjct: 61 ARALGVPTLTEEELYRLLE 79 >gi|212711586|ref|ZP_03319714.1| hypothetical protein PROVALCAL_02661 [Providencia alcalifaciens DSM 30120] gi|212685688|gb|EEB45216.1| hypothetical protein PROVALCAL_02661 [Providencia alcalifaciens DSM 30120] Length = 564 Score = 130 bits (326), Expect = 9e-28, Method: Composition-based stats. Identities = 99/610 (16%), Positives = 193/610 (31%), Gaps = 100/610 (16%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 L +++ D Y + D YD + + P+ + + Sbjct: 52 RLGEQLQEWDRQYQIEGVSEVSDEVYDQILAQWRRGQRC------LNLPDRLPQPV--QP 103 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 N V H IP L+K+ +++ ++ + W L+PK+DG +T+ Sbjct: 104 NTE-RLVKHPIPHTGLKKL-EFKEIAPWLESRHEVW-----------LQPKVDGVAVTLH 150 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 YE G V RGDG G + I IP+ +S+ I ++GE++ Sbjct: 151 YENGHLVSMISRGDGSKGLNWREKADFIQGIPKTISIKQS--IVLQGELFW-----KLNE 203 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262 G N R+ +G L R + + V Q M Sbjct: 204 HVQKIDGG---QNARSKVAGWLMRKDMP-AQVTDDIGVFIWSWPDNSTPMSQQLSELAML 259 Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322 + ++P+ DG+V K F RA Sbjct: 260 GFDLAQRYSHPIVESQS---IAQWRDHYYSISMPFATDGVVLKS--FPTPSSSAWRANQN 314 Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382 W I+ K+ K + ++D+ ++GR+G++ +A +EPV I ++ L Sbjct: 315 SWSIAWKYPLKSIVSDVVDLTFRVGRSGVVNVIANIEPVRIDDKKVSKIRL--------- 365 Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442 +D+ VGD++ + +G P + +I ++ Sbjct: 366 --GSLNSWKQKDVLVGDKIQLTLSGHGAPLMEKVIWRQKP-------------------R 404 Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502 + LN + A C + + NI G+G++ + + Sbjct: 405 QYLNTLPLENFHALSCLS-YSTDCASQFVARLTWLGKQLNIRGVGEKTWMVWVEK----- 458 Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 + L + +N L N + + + ++ ++ LGI Sbjct: 459 --------YGLSELLGWLSPDWQNRL-PKTQQTANALEQLQQAQHQLTANWLKGLGIPLK 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 ++ + A LS +++ V + QA+ ++ P Sbjct: 510 SEQLEKIAAITTLSEPEQIEKMA------------------VSETRKQALQQWLAAPEIK 551 Query: 623 CAVEALLKEV 632 A++ L Sbjct: 552 QALQTLQNLG 561 >gi|282599848|ref|ZP_05972113.2| NAD-dependent DNA ligase adenylation domain protein [Providencia rustigianii DSM 4541] gi|282567376|gb|EFB72911.1| NAD-dependent DNA ligase adenylation domain protein [Providencia rustigianii DSM 4541] Length = 557 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 80/486 (16%), Positives = 159/486 (32%), Gaps = 68/486 (13%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 L ++ + Y I D YD L + + + Sbjct: 34 HQRLGNQLQEWNKNYLVDGFSPINDEVYDQLLSKWQQRQRC------LSLSDSLPQ-VPL 86 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + L V H +P L+K N+ ++ +I + W L+PK+DG ++ Sbjct: 87 PILTPL--VKHPLPHTGLKK-QNLNEITTWIAKRKEIW-----------LQPKVDGVAVS 132 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + Y+ G+ V RG+G G + I +P+V+ + + ++GE++ N+ Sbjct: 133 LVYDNGQLVSLISRGNGVEGLEWRKKADFILDLPKVIPIKQ--RVILQGELFWKLNN--- 187 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260 + N R+ +G L R + + Q L + Sbjct: 188 -----HVQKQLGGLNARSKVAGWLMRKKLPEKIED---NIGIFIWAWPDGDLQQEVQLSR 239 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 + +GF ++ T + E + LP+ DG+V K F ++ Sbjct: 240 LSEIGFDLSKRYSHQVTSIEQIIQRQE-DYFSTPLPFATDGIVLKS--FPTPPSAAWQSN 296 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 W I+ K+ + + + + +GRTGI+ VA ++PV + +++ L Sbjct: 297 QNSWAIAWKYPLQNIISEITGLKFGVGRTGIVNVVASIKPVTLDAKQVSHVNL------- 349 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 +D+ VGD + + AG IPKV + Sbjct: 350 ----GSLNSWKKKDLLVGDHIQLTLAGHGIPKVE--------------------QVIWRV 385 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 RD + + I+G+G++ + ++ Sbjct: 386 AHRDYPETMLLEQFNRWSCFSYSIECLPQFVARLTWLGKQLGIKGVGEKTWQQWAENYGL 445 Query: 501 AFSIRI 506 + + Sbjct: 446 SQLLEW 451 >gi|77407286|ref|ZP_00784228.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B] gi|77174105|gb|EAO77032.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B] Length = 223 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 109/240 (45%), Gaps = 28/240 (11%) Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C S +V A RC L C Q ERL HF SRDA NI G G Sbjct: 4 PKLCPSCGSELVHFEGE------VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSL 56 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F A I ADI+ L S + + G + S T +Y +I + S Sbjct: 57 VEKLFD----AHLIADVADIYRL------SIENLLTLDGIKEKSATKIYHAIQSSKENSA 106 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E+ +F LGIRHVG++ +R L + + + + +Q S+ + +G +IA+ Sbjct: 107 EKLLFGLGIRHVGSKASRLLLEEFGNLRQLSQASQ----------ESIASIDGLGGVIAK 156 Query: 611 AIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++ F++ +E L V+ + + +++ +V TG L+K+ R++A+E Sbjct: 157 SLHTFFEKEEVDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEK 216 >gi|213024747|ref|ZP_03339194.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 175 Score = 128 bits (321), Expect = 4e-27, Method: Composition-based stats. Identities = 58/173 (33%), Positives = 93/173 (53%), Gaps = 5/173 (2%) Query: 98 LEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157 L+ +++ E F R+ + ++ + + E K+DG ++I YE G V AA RGDG Sbjct: 1 LDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELKLDGLAVSILYENGVLVSAATRGDG 58 Query: 158 HSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANP 216 +GED+++ +R I IP L + P +EVRGEV++ + F +N++ G K +ANP Sbjct: 59 TTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANP 118 Query: 217 RNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIFAKGQYEMLQKMRCLGFP 267 RNAA+G LR+L+P R L FF +G+G L + + G+ Sbjct: 119 RNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQFKAWGYR 171 >gi|1488250|gb|AAB12366.1| DNA ligase [Dichelobacter nodosus] Length = 139 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 59/103 (57%), Gaps = 1/103 (0%) Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 +A I F+ + N + A++ S +K + + + K +V TGTL + R +A Sbjct: 1 VAADIEHFFADEDNRAVIAAIVPAGVHWSTELPKKIIDAPLLGKTVVITGTLPSLSRAEA 60 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 Q+ + LGA V++ +SR+TD +++G + GSKL +AQ V+++ Sbjct: 61 QKRLETLGAKVTSQVSRQTDFLLLGADAGSKLARAQAFSVRLL 103 >gi|149925065|ref|ZP_01913379.1| NAD-dependent DNA ligase LigA [Plesiocystis pacifica SIR-1] gi|149814058|gb|EDM73688.1| NAD-dependent DNA ligase LigA [Plesiocystis pacifica SIR-1] Length = 669 Score = 126 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 30/73 (41%), Positives = 47/73 (64%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + K +V TG L KI+R +A+ + LGA VS +S+ TD++ VG+ PGSKL KA +LG+ Sbjct: 247 VNGKTVVVTGKLAKIKRAEAEARLNALGAKVSGSVSKSTDLLFVGEKPGSKLAKANKLGI 306 Query: 707 KIMNEEQFLFLLQ 719 + +E + L+ Sbjct: 307 PVHDEAALMQLVA 319 Score = 111 bits (277), Expect = 4e-22, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 51/89 (57%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + + E + ++ KK+ TG L + R +A+ ++ GA ++ +S TD++I+G Sbjct: 327 VKAAPKVETKAVAALKGKKIAVTGKLSLMTRAEAKAHILAAGAKPTSSVSGATDLLILGK 386 Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 + GSK A QLGV+ +NE+QFL ++ Sbjct: 387 DAGSKQRLAIQLGVETVNEDQFLRMIGDE 415 >gi|9631366|ref|NP_048233.1| ORF MSV162 putative NAD+ dependent DNA ligase, similar to Thermus thermophilus SW:P26996 [Melanoplus sanguinipes entomopoxvirus] gi|4049719|gb|AAC97679.1| ORF MSV162 putative NAD+ dependent DNA ligase, similar to Thermus thermophilus SW:P26996 [Melanoplus sanguinipes entomopoxvirus] Length = 522 Score = 126 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 104/627 (16%), Positives = 210/627 (33%), Gaps = 121/627 (19%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + +S+E + + L ++ YY + +I D YD + + + +PD Sbjct: 17 LNKISLEDISEIIKIL-------NEKYY-EGETLISDEIYDKI---IEYVNKKYPD---- 61 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 N KIG E KV S KI++ ++ +KF I ++ + Sbjct: 62 ---NDITKKIGYEPKN---KVKLPYYMGSENKIYDEDE-KKFNNWIEKY------GTSSI 108 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 + K DG + K K RGDG+ G+D+S ++ L +R Sbjct: 109 IVSVKADGISVLWDIGKNKL---YTRGDGNYGKDISWFLKY-----MNYDLPELSDYVIR 160 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 GE+ I+K+ RN +G + L + + ++ +G Sbjct: 161 GELVINKD------------------KTRNDVAGAINSL-EANRNEDILKEIYFVGYEIL 201 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q +K++ ++ + + ++ + YDIDGLV + + Sbjct: 202 NPRFNQENQFKKLKQHKIRHIKAMKYDIEDVSLECLSELYQELKPKMKYDIDGLVIRNNN 261 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + G P W ++K +T++L++ QI + P+A LEP+ + I Sbjct: 262 VNDPITDGN----PPWSFAYKPPNTIYTTKVLNVIWQISKQNKYIPIAELEPIKLENKTI 317 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + +N ++ I V ++ G IPK+V++I ++ Sbjct: 318 KRVSCYNAKFV-----------TENGIGTDAIVEIEYRGGAIPKLVNVIKPVTVDESD-- 364 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 I + + ++ K + + L+ A + ++H NI L K Sbjct: 365 --LPDGKIIDNHLYAPIDSKESNIKIISQFFKILSIQAPNKKVIEHLYDNGITNIVELLK 422 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 L + N SIN ++I Sbjct: 423 SDLTELLDT---------------------------------TKKINKNALHSINIAKSI 449 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + + ++ + + L K Y ++++F ++ + + Sbjct: 450 EISLPL-AIAALSIPNLTEKVLEKIYNTHKDFLT-----------TKQDFEKIKGINKLS 497 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS 635 A+ I Q +N ++ LK + Sbjct: 498 AEKIKS--QILKNKNMIDEYLKLIKIK 522 >gi|213027451|ref|ZP_03341898.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 79 Score = 125 bits (314), Expect = 3e-26, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P ILD+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPT 95 P ++G + ++ H +P Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPM 79 >gi|330879795|gb|EGH13944.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea str. race 4] Length = 281 Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats. Identities = 89/295 (30%), Positives = 139/295 (47%), Gaps = 42/295 (14%) Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++ R +A+ Sbjct: 1 MVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENAR 49 Query: 427 PFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 P CP+C S V R +T A +RC G LAC AQ + + H+VSR A Sbjct: 50 AVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRA 109 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +IEGLG + ++ + I PAD++ L+ Q + GF ++S L Sbjct: 110 MDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLLK 159 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 +I R +L RFI++LGI VG E A+ LA+ S Q + + L Sbjct: 160 AIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LTY 209 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650 +P VG +A I F+++ N ++ALL E + + S+ +E Sbjct: 210 LPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 264 >gi|309805852|ref|ZP_07699887.1| NAD-dependent DNA ligase adenylation domain protein [Lactobacillus iners LactinV 03V1-b] gi|308167761|gb|EFO69905.1| NAD-dependent DNA ligase adenylation domain protein [Lactobacillus iners LactinV 03V1-b] Length = 109 Score = 121 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + LS+ QA+ E+ L +++ YY P++ D+ YD + ++ + +P L Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102 DP+ ++GG L KV H P LS+ ++ Sbjct: 59 -DPDSITQRVGGNTKSDLAKVVHEQPMLSMGDVF 91 >gi|218659834|ref|ZP_03515764.1| NAD-dependent DNA ligase LigA [Rhizobium etli IE4771] Length = 262 Score = 121 bits (303), Expect = 4e-25, Method: Composition-based stats. Identities = 115/248 (46%), Positives = 161/248 (64%), Gaps = 2/248 (0%) Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG +GE+V+A IR I IP L +P ++E+RGEVY++K+DFLALN +M A Sbjct: 1 MVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIRGEVYMAKSDFLALNRQMEA 60 Query: 208 VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF 266 G++ Y NPRN A+G LR+L+ +R L FF + G+ +E+ A Q+ M+Q + GF Sbjct: 61 EGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMAEMPADTQFGMVQTFKDWGF 120 Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 PVN +++ N+ I+++Y+E+ R L YDIDG+VYKVD LQ++LG R+RSPRW Sbjct: 121 PVNPLMKRLNSVADILTHYDEIGLERPDLDYDIDGVVYKVDSLELQQRLGFRSRSPRWAT 180 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVAR-LEPVNIGGALITNATLHNEDYIKGLDAS 385 +HKF +QA T + I+IQ+GRTG LTP R L G ++TNATLHNE +G Sbjct: 181 AHKFPAEQAFTEVEKIEIQVGRTGALTPGGRGLSRSRSAGVVVTNATLHNEGLHQGHRQQ 240 Query: 386 GKVMRGGR 393 + G R Sbjct: 241 RWSVSGRR 248 >gi|312831438|emb|CAP78100.2| Uncharacterized DNA ligase-like protein yicF [Escherichia coli LF82] Length = 505 Score = 121 bits (302), Expect = 5e-25, Method: Composition-based stats. Identities = 98/583 (16%), Positives = 182/583 (31%), Gaps = 93/583 (15%) Query: 43 ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102 + D YD L R F + V H + + K+ Sbjct: 1 MEDGVYDQLSARLTQWQRCF---------GNETRDVMMPPLNG--AVMHPVAHTGVRKMA 49 Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162 + L ++ W ++PK+DG +T+ Y GK A RG+G GED Sbjct: 50 DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98 Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222 + +R I +P+ +S ++GE+++ + + N R +G Sbjct: 99 WTQKVRLISAVPQTVSGP-LANSTLQGEIFLQRKG--------HIQQQMGGINARAKVAG 149 Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282 ++ R +D L FV + ++ L V+ A+ + Sbjct: 150 LMMRQGNSDTLNSLAVFVWAWPDGPHLMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVR 209 Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342 + + + K P+ DG+V + + + W+++ K+ + I Sbjct: 210 NEWWKAKL-----PFVTDGVVVRAAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262 Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402 +G++G ++ VA L PV + I + DI GD++L Sbjct: 263 QFAVGKSGKISVVASLAPVMLDDKKIQRVNI-----------GSVRRWQEWDIAPGDQIL 311 Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462 V AG+ IP++ + R + C Sbjct: 312 VSLAGQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFAS 351 Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521 C Q + RL S+ ++G+G+ ++ L Q +T Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407 Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 G L+ N R R++ ++GI A A S+ Sbjct: 408 ------PGIAKSKSAQLWHQFNLARQQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 W L P G A+ ++E+ +N + Sbjct: 459 FSTEQF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 491 >gi|320193847|gb|EFW68480.1| DNA ligase, LigB [Escherichia coli WV_060327] Length = 505 Score = 121 bits (302), Expect = 5e-25, Method: Composition-based stats. Identities = 97/583 (16%), Positives = 182/583 (31%), Gaps = 93/583 (15%) Query: 43 ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102 + D YD L R F + V H + + K+ Sbjct: 1 MEDGVYDQLSARLTQWQRCF---------GNETRDVMMPPLNG--AVMHPVAHTGVRKMA 49 Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162 + L ++ W ++PK+DG +T+ Y GK A RG+G GED Sbjct: 50 DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98 Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222 + +R I +P+ +S ++GE+++ + + N R +G Sbjct: 99 WTQKVRLISAVPQTVSGP-LANSTLQGEIFLQRKG--------HIQQQMGGINARAKVAG 149 Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282 ++ R +D L FV + ++ L V+ A+ + Sbjct: 150 LMMRQGNSDTLNSLAVFVWAWPDGPHLMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVR 209 Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342 + + + K P+ DG+V + + + W+++ K+ + I Sbjct: 210 NEWWKAKL-----PFVTDGVVVRAAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262 Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402 +G++G ++ VA L PV + + + DI GD++L Sbjct: 263 QFAVGKSGKISVVASLVPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQIL 311 Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462 V AG+ IP++ + R + C Sbjct: 312 VSLAGQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFAS 351 Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521 C Q + RL S+ ++G+G+ ++ L Q +T Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407 Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 G L+ N R R++ ++GI A A S+ Sbjct: 408 ------PGIAKSKSAQLWHQFNLARQQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 W L P G A+ ++E+ +N + Sbjct: 459 FSTEQF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 491 >gi|320201328|gb|EFW75909.1| DNA ligase, LigB [Escherichia coli EC4100B] Length = 505 Score = 121 bits (302), Expect = 6e-25, Method: Composition-based stats. Identities = 97/583 (16%), Positives = 183/583 (31%), Gaps = 93/583 (15%) Query: 43 ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102 + D YD L R F + V H + + K+ Sbjct: 1 MEDGVYDQLSARLTQWQRCF---------GSEPRDVMMPPLNG--AVMHPVAHTGVRKMV 49 Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162 + L ++ W ++PK+DG +T+ Y GK A RG+G GED Sbjct: 50 DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98 Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222 + + I +P+ +S ++GE+++ + + N R +G Sbjct: 99 WTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREG--------HIQQQMGGINARAKVAG 149 Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282 ++ R + +D L FV ++ E+ L V+ A+ + Sbjct: 150 LMMRQDDSDTLNSLGVFVWAWPDGPQLMTDRLKELATAGFTLTQRYTRAVKNADEVARVR 209 Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342 + + + K P+ DG+V + + + W+++ K+ + I Sbjct: 210 NEWWKAKL-----PFVTDGVVVRGAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262 Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402 +G++G ++ VA L PV + + + DI GD++L Sbjct: 263 QFAVGKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQIL 311 Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462 V AG+ IP++ + R + C Sbjct: 312 VSLAGQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFAS 351 Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521 C Q + RL S+ ++G+G+ ++ L Q +T Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407 Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 G L+ N R R++ ++GI A A S+ Sbjct: 408 ------PGIAKSKSAQLWHQFNLARKQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 W L P G A+ ++E+ +N + Sbjct: 459 FSTEQF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 491 >gi|281180692|dbj|BAI57022.1| putative DNA ligase [Escherichia coli SE15] Length = 505 Score = 121 bits (302), Expect = 6e-25, Method: Composition-based stats. Identities = 97/583 (16%), Positives = 182/583 (31%), Gaps = 93/583 (15%) Query: 43 ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102 + D YD L R F + V H + + K+ Sbjct: 1 MEDGVYDQLSARLTQWQRCF---------GNETRDVMIPPLNG--AVMHPVAHTGVRKMA 49 Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162 + L ++ W ++PK+DG +T+ Y GK A RG+G GED Sbjct: 50 DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98 Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222 + +R I +P+ +S ++GE+++ + + N R +G Sbjct: 99 WTQKVRLISAVPQTVSGP-LANSTLQGEIFLKRKG--------HIQQQMGGINARAKVAG 149 Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282 ++ R +D L FV + ++ L V+ A+ + Sbjct: 150 LMMRQGNSDTLNSLAVFVWAWPDGPHLMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVR 209 Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342 + + + K P+ DG+V + + + W+++ K+ + I Sbjct: 210 NEWWKAKL-----PFVTDGVVVRAAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262 Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402 +G++G ++ VA L PV + + + DI GD++L Sbjct: 263 QFAVGKSGKISVVASLVPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQIL 311 Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462 V AG+ IP++ + R + C Sbjct: 312 VSLAGQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFAS 351 Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521 C Q + RL S+ ++G+G+ ++ L Q +T Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407 Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 G L+ N R R++ ++GI A A S+ Sbjct: 408 ------PGIAKSKSAQLWHQFNLARQQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 W L P G A+ ++E+ +N + Sbjct: 459 FSTEQF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 491 >gi|209921119|ref|YP_002295203.1| NAD-dependent DNA ligase LigB [Escherichia coli SE11] gi|209914378|dbj|BAG79452.1| putative DNA ligase [Escherichia coli SE11] Length = 505 Score = 120 bits (301), Expect = 7e-25, Method: Composition-based stats. Identities = 97/583 (16%), Positives = 183/583 (31%), Gaps = 93/583 (15%) Query: 43 ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102 + D YD L R F + V H + + K+ Sbjct: 1 MEDGVYDQLSARLTQWQRCF---------GSEPRDVMMPPLNG--AVMHPVAHTGVRKMV 49 Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162 + L ++ W ++PK+DG +T+ Y GK A RG+G GED Sbjct: 50 DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98 Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222 + + I +P+ +S ++GE+++ + + N R +G Sbjct: 99 WTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREG--------HIQQQMGGINARAKVAG 149 Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282 ++ R + +D L FV ++ E+ L V+ A+ + Sbjct: 150 LMMRQDDSDTLNSLGVFVWAWPDGPQLMTDRLKELATAGFTLTQRYTRAVKNADEVARVR 209 Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342 + + + K P+ DG+V + + + W+++ K+ + I Sbjct: 210 NEWWKAKL-----PFVTDGVVVRGAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262 Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402 +G++G ++ VA L PV + + + DI GD++L Sbjct: 263 QFAVGKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWEEWDIAPGDQIL 311 Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462 V AG+ IP++ + R + C Sbjct: 312 VSLAGQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFAS 351 Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521 C Q + RL S+ ++G+G+ ++ L Q +T Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407 Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 G L+ N R R++ ++GI A A S+ Sbjct: 408 ------PGIAKSKSAQLWHQFNLARKQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 W L P G A+ ++E+ +N + Sbjct: 459 FSTEQF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 491 >gi|148705785|gb|EDL37732.1| replication factor C 1, isoform CRA_a [Mus musculus] Length = 1160 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 424 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 483 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 484 SKSDKAAALGTKILDEDGLLDLI 506 >gi|148705786|gb|EDL37733.1| replication factor C 1, isoform CRA_b [Mus musculus] Length = 1157 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 420 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 479 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 480 SKSDKAAALGTKILDEDGLLDLI 502 >gi|300907689|ref|ZP_07125317.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 84-1] gi|301303881|ref|ZP_07210000.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 124-1] gi|300400625|gb|EFJ84163.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 84-1] gi|300840844|gb|EFK68604.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 124-1] gi|315254034|gb|EFU34002.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 85-1] Length = 505 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 96/583 (16%), Positives = 184/583 (31%), Gaps = 93/583 (15%) Query: 43 ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102 + D YD L R F + V H + + K+ Sbjct: 1 MEDGVYDQLSARLTQWQRCF---------GSEPRDVMMPPLNG--AVMHPVAHTGVRKMV 49 Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162 + L ++ W ++PK+DG +T+ Y GK A RG+G GED Sbjct: 50 DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98 Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222 + + I +P+ +S ++GE+++ + + N R +G Sbjct: 99 WTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREG--------HIQQQMGGINARAKVAG 149 Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282 ++ R + +D L FV ++ + E+ L V+ A+ + Sbjct: 150 LMMRQDDSDTLNSLGVFVWAWPDGPQLMSDRLKELATAGFTLTQTYTRAVKNADEVARVR 209 Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342 + + + + P+ DG+V + + + W+++ K+ + I Sbjct: 210 NEWWKAEL-----PFVTDGVVVRGAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262 Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402 +G++G ++ VA L PV + + + DI GD++L Sbjct: 263 QFAVGKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQIL 311 Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462 V AG+ IP++ + R + C Sbjct: 312 VSLAGQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFAS 351 Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521 C Q + RL S+ ++G+G+ ++ L Q +T Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407 Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 G L+ N R R++ ++GI A A S+ Sbjct: 408 ------PGIAKSKSAQLWHQFNLARKQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 W L P G A+ ++E+ +N + Sbjct: 459 FSTEQF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 491 >gi|320191301|gb|EFW65951.1| DNA ligase , LigB [Escherichia coli O157:H7 str. EC1212] gi|326339852|gb|EGD63659.1| DNA ligase , LigB [Escherichia coli O157:H7 str. 1125] Length = 505 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 97/583 (16%), Positives = 184/583 (31%), Gaps = 93/583 (15%) Query: 43 ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102 + D YD L R F + V H + + K+ Sbjct: 1 MEDGVYDQLSARLTQWQRCF---------VSEPRDVMMPPLNG--AVMHPVAHTGVRKMA 49 Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162 + L ++ W ++PK+DG +T+ Y GK A RG+G GED Sbjct: 50 DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98 Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222 + + I +P+ +S ++GE+++ + + N R +G Sbjct: 99 WTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREG--------HIQQQMGGINARAKVAG 149 Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282 ++ R + +D L FV ++ E+ L V+ A+ + Sbjct: 150 LMMRQDDSDTLNSLGVFVWAWPDGPQLMTDRLKELATAGFTLTQRYTRAVKNADEVARVR 209 Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342 + + + K P+ DG+V + + + W+++ K+ ++ I Sbjct: 210 NEWWKAKL-----PFVTDGVVVRGAKEPESRHW--LPGQAEWLVAWKYQPVAQVAKVKAI 262 Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402 +G++G ++ VA L PV + + + DI GD++L Sbjct: 263 QFAVGKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQIL 311 Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462 V AG+ IP++ + R + C Sbjct: 312 VSLAGQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFAS 351 Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521 C Q + RL S+ ++G+G+ ++ L Q +T Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407 Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 G L+ N R R++ ++GI A A S+ Sbjct: 408 ------PGIAKSKSAQLWHRFNLARKQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 W L P G A+ ++E+ +N + Sbjct: 459 FSTEQF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 491 >gi|126331819|ref|XP_001374096.1| PREDICTED: similar to Replication factor C (activator 1) 1, 145kDa [Monodelphis domestica] Length = 1347 Score = 119 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT +++G + G Sbjct: 528 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTSYLVMGRDSGQ 587 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 588 SKSDKALALGTKIIDEDGLLDLI 610 >gi|323155299|gb|EFZ41482.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli EPECa14] gi|323177651|gb|EFZ63235.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli 1180] Length = 505 Score = 119 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 97/583 (16%), Positives = 183/583 (31%), Gaps = 93/583 (15%) Query: 43 ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102 + D YD L R F + V H + + K+ Sbjct: 1 MEDGVYDQLSARLTQWQRCF---------VSEPRDVMMPPLNG--AVMHPVAHTGVRKMA 49 Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162 + L ++ W ++PK+DG +T+ Y GK A RG+G GED Sbjct: 50 DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98 Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222 + + I +P+ +S ++GE+++ + + N R +G Sbjct: 99 WTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREG--------HIQQQMGGINARAKVAG 149 Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282 ++ R + +D L FV ++ E+ L V+ A+ + Sbjct: 150 LMMRQDDSDTLNSLGVFVWAWPDGPQLMTDRLKELATAGFTLTQRYTRAVKNADEVARVR 209 Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342 + + + K P+ DG+V + + + W+++ K+ + I Sbjct: 210 NEWWKAKL-----PFVTDGVVVRGAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262 Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402 +G++G ++ VA L PV + + + DI GD++L Sbjct: 263 QFAVGKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQIL 311 Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462 V AG+ IP++ + R + C Sbjct: 312 VSLAGQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFAS 351 Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521 C Q + RL S+ ++G+G+ ++ L Q +T Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407 Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 G L+ N R R++ ++GI A A S+ Sbjct: 408 ------PGIAKSKSAQLWHRFNLARKQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 W L P G A+ ++E+ +N + Sbjct: 459 FSTEQF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 491 >gi|460932|gb|AAC52140.1| ISRE-binding protein [Mus musculus] Length = 1145 Score = 119 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 408 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 467 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 468 SKSDKAAALGTKILDEDGLLDLI 490 >gi|156359338|ref|XP_001624727.1| predicted protein [Nematostella vectensis] gi|156211524|gb|EDO32627.1| predicted protein [Nematostella vectensis] Length = 793 Score = 119 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 + + E V TG L I+R AQ+ + + G V+ +S+KT ++VG + G Sbjct: 45 KEIPQGAENCFEGLTFVVTGVLDSIERDHAQDLIQRYGGKVTGSVSKKTSYLLVGRDAGA 104 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SKL KAQ LG K ++E+ FL L+ Sbjct: 105 SKLSKAQTLGTKQLDEDAFLDLI 127 >gi|188219597|ref|NP_035388.2| replication factor C subunit 1 [Mus musculus] gi|148705787|gb|EDL37734.1| replication factor C 1, isoform CRA_c [Mus musculus] Length = 1131 Score = 119 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 394 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 453 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 454 SKSDKAAALGTKILDEDGLLDLI 476 >gi|1022776|gb|AAA79698.1| differentiation specific element binding protein [Mus musculus] Length = 1130 Score = 119 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 394 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 453 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 454 SKSDKAAALGTKILDEDGLLDLI 476 >gi|405112|gb|AAA21643.1| activator 1 large subunit [Mus musculus] Length = 1131 Score = 119 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 394 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 453 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 454 SKSDKAAALGTKILDEDGLLDLI 476 >gi|54887426|gb|AAH85173.1| Rfc1 protein [Mus musculus] Length = 1132 Score = 119 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 394 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 453 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 454 SKSDKAAALGTKILDEDGLLDLI 476 >gi|1703056|sp|P35601|RFC1_MOUSE RecName: Full=Replication factor C subunit 1; AltName: Full=A1-P145; AltName: Full=Activator 1 140 kDa subunit; Short=A1 140 kDa subunit; AltName: Full=Activator 1 large subunit; AltName: Full=Activator 1 subunit 1; AltName: Full=Differentiation-specific element-binding protein; AltName: Full=ISRE-binding protein; AltName: Full=Replication factor C 140 kDa subunit; Short=RF-C 140 kDa subunit; Short=RFC140; AltName: Full=Replication factor C large subunit gi|457742|emb|CAA51260.1| replication factor C [Mus musculus] Length = 1131 Score = 119 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 394 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 453 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 454 SKSDKAAALGTKILDEDGLLDLI 476 >gi|257471690|pdb|2K7F|A Chain A, Haddock Calculated Model Of The Complex Between The Brct Region Of Rfc P140 And Dsdna gi|259090084|pdb|2K6G|A Chain A, Solution Structure Of The Dna Binding Brct Domain From The Large Subunit Of Human Replication Factor C Length = 109 Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 23 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 82 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 83 SKSDKAAALGTKIIDEDGLLNLI 105 >gi|159164362|pdb|2EBU|A Chain A, Solution Structure Of The Brct Domain From Human Replication Factor C Large Subunit 1 Length = 112 Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 13 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 72 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 73 SKSDKAAALGTKIIDEDGLLNLI 95 >gi|323160743|gb|EFZ46679.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli E128010] Length = 505 Score = 118 bits (296), Expect = 3e-24, Method: Composition-based stats. Identities = 97/583 (16%), Positives = 182/583 (31%), Gaps = 93/583 (15%) Query: 43 ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102 + D YD L R F + V H + + K+ Sbjct: 1 MEDGVYDQLSARLTQWQRCF---------VSEPRDVMMPPLNG--AVMHPVAHTGVRKMA 49 Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162 + L ++ W ++PK+DG +T+ Y GK A RG+G GED Sbjct: 50 DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98 Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222 + + I +P+ +S ++GE+++ + + N R +G Sbjct: 99 WTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREG--------HIQQQMGGINARAKVAG 149 Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282 ++ R + +D L FV ++ E+ L V+ A+ + Sbjct: 150 LMMRQDDSDTLNSLGVFVWAWPDGPQLMTDRLKELATAGFTLTQRYTRAVKNADEVARVR 209 Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342 + + + K P+ DG+V + + + W+++ K+ + I Sbjct: 210 NEWWKAKL-----PFVTDGVVVRGAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262 Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402 +G++G ++ VA L PV + + + DI GD++L Sbjct: 263 QFAVGKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQIL 311 Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462 V AG+ IP++ + R + C Sbjct: 312 VSLAGQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFAS 351 Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521 C Q + RL S+ ++G+G+ ++ L Q +T Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407 Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 G L+ N R R++ ++GI A A S+ Sbjct: 408 ------PGIAKSKSAQLWHRFNLARKQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 W L P G A+ + E+ +N + Sbjct: 459 FSTEQF-------WQQL---PGTGSGRARQVTEWKENAQIKKL 491 >gi|149035369|gb|EDL90073.1| replication factor C 1 [Rattus norvegicus] Length = 1131 Score = 118 bits (296), Expect = 3e-24, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT +++G + G Sbjct: 393 KEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGNVSKKTSYLVMGRDSGQ 452 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 453 SKSDKAAALGTKILDEDGLLDLI 475 >gi|189339249|ref|NP_445999.1| replication factor C (activator 1) 1 [Rattus norvegicus] Length = 1131 Score = 118 bits (296), Expect = 3e-24, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT +++G + G Sbjct: 392 KEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGNVSKKTSYLVMGRDSGQ 451 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 452 SKSDKAAALGTKILDEDGLLDLI 474 >gi|325474100|gb|EGC77288.1| hypothetical protein HMPREF9353_01638 [Treponema denticola F0402] Length = 207 Score = 118 bits (296), Expect = 3e-24, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 89/228 (39%), Gaps = 30/228 (13%) Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560 + D++TL ++ I G +S +Y +++ ++ ISL FI I Sbjct: 1 MGRVNSITDLYTLTVE------ELAAIDRMGKLSAEKVYKALHSKKEISLTEFIAGFDIE 54 Query: 561 HVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 +G + L + + + V G +++ +V Sbjct: 55 GIGETMVEKLEEAGFNDLNELLRASEA----------DFANVYQFGQVLSHTLVT----- 99 Query: 620 RNICAVEA----LLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLG 674 N+ ++ L+ + I + ++ FTG L ++R +A+ V + G Sbjct: 100 -NLSILKDEMTGLIDKGYIKIKPQLTSEEGAVLKGLSFCFTGELNTMKRAQAEALVKEKG 158 Query: 675 AVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 V + + + ++ D+ SK +KAQ+LG I+ EE FL L+ + Sbjct: 159 GTVKSSVVKGLSYLVTNTPDSGSSKNKKAQELGTAIITEEAFLNLIGK 206 >gi|323166867|gb|EFZ52606.1| NAD-dependent DNA ligase adenylation domain protein [Shigella sonnei 53G] Length = 505 Score = 118 bits (295), Expect = 4e-24, Method: Composition-based stats. Identities = 97/583 (16%), Positives = 182/583 (31%), Gaps = 93/583 (15%) Query: 43 ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102 + D YD L R F + V H + + K+ Sbjct: 1 MEDGVYDQLSARLTQWQRCF---------GSEPRDVMMPPLNG--AVMHPVAHTGVRKMV 49 Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162 + L ++ W ++PK+DG +T+ Y GK A RG+G GED Sbjct: 50 DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98 Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222 + + I +P+ +S ++GE+++ + + N R +G Sbjct: 99 WTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREG--------HIQQQMGGINARAKVAG 149 Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282 ++ R +D L FV ++ E+ L V+ A+ + Sbjct: 150 LMMRQGNSDTLNSLAVFVWAWPDGPQLMTDRLKELATAGFTLTQRYTRAVKNADEVARVR 209 Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342 + + + K P+ DG+V + + + W+++ K+ + I Sbjct: 210 NEWWKAKL-----PFVTDGVVVRAAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262 Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402 +G++G ++ VA L PV + + + DI GD++L Sbjct: 263 QFAVGKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQIL 311 Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462 V AG+ IP++ + R + C Sbjct: 312 VSLAGQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFAS 351 Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521 C Q + RL S+ ++G+G+ ++ L Q +T Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407 Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 G L+ N R R++ ++GI A A S+ Sbjct: 408 ------PGIAKSKSAQLWHQFNLARKQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 W L P G A+ ++E+ +N + Sbjct: 459 FSTEQF-------WQRL---PGTGSGRARQVIEWKENAQIKKL 491 >gi|284008967|emb|CBA75857.1| NAD-dependent DNA ligase LigB [Arsenophonus nasoniae] Length = 547 Score = 118 bits (295), Expect = 4e-24, Method: Composition-based stats. Identities = 94/610 (15%), Positives = 183/610 (30%), Gaps = 122/610 (20%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +E+ ++ E+ D+ YY + ++ D YD + ++ L D L Sbjct: 48 REIKAINSELKRWDEAYYINGQSLVNDETYDQIFALWKHWSNC---LRLPPDKTNTL--- 101 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 TH + L+KI +++ ++I + W L+PK+DG Sbjct: 102 -SLPIKGRK--THPVIHTGLKKI-TADEIARWIAGRHEVW-----------LQPKVDGVA 146 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 T+ Y+KGK RG+G G D + +P IP+ + + ++I ++GE++ + Sbjct: 147 ATLVYKKGKLAALISRGNGIEGIDWTPKADFLPAIPKTIPNHATQLI-LQGELFWYQTGH 205 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 AN RN +G L R N + + Sbjct: 206 QQAIA--------GGANARNKVAGWLMRKNLLVQQEE---QIGIFIWSWPDGPSNMQTQF 254 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ GFP+ T ++ + +P+ DG+V K + Sbjct: 255 AQLERWGFPLTKRYSHLVTSVDQITQWQRY-YYNQPMPFATDGIVLKQ--LPYTLGQYWQ 311 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 A W ++ K+ + ++ + IGRTG + P+ Sbjct: 312 AGINNWSVAWKYPTQNRVAQVAAVKFNIGRTGKINPII---------------------- 349 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I GD + + +G IPK I+ + + Sbjct: 350 ---------------GILPGDAIQISLSGHGIPKFDKIV--------WQIKQRKMLSVPE 386 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 + L+ + + + +EG+ ++ + Sbjct: 387 QKNYHQLS------------CFYYSMRCESQFVARLVWLAKQLKMEGINEKGWLALIR-- 432 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A I D L Q T + G +Y + ++ LG Sbjct: 433 --AGKITNLMDWSRLTLEQITEVAMFKANKGKF------IYQQFLSAQKRPFSEWLKGLG 484 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 + ++ LS + I + +V+F +N Sbjct: 485 VPLPEKLFSKINCWNDLSSKEINSAILSRKQQKK-------------------LVQFIEN 525 Query: 619 PRNICAVEAL 628 V+ L Sbjct: 526 KDVKQLVKVL 535 >gi|260827655|ref|XP_002608780.1| hypothetical protein BRAFLDRAFT_183645 [Branchiostoma floridae] gi|229294132|gb|EEN64790.1| hypothetical protein BRAFLDRAFT_183645 [Branchiostoma floridae] Length = 756 Score = 118 bits (295), Expect = 4e-24, Method: Composition-based stats. Identities = 32/95 (33%), Positives = 57/95 (60%), Gaps = 3/95 (3%) Query: 628 LLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L +E ++G E E + V TG L+ ++RH+A+E V + G V++ +S++T Sbjct: 43 LTREGPRALGTKEIPQGQENCLGGLTFVLTGILESMERHEAKELVERYGGKVTSSVSKRT 102 Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 ++VG + G SKL+K QLG+K ++E+ L L++ Sbjct: 103 SYVVVGRDAGESKLDKVSQLGLKTLDEDGLLELVK 137 >gi|1066815|gb|AAA81558.1| nonamer binding protein [Mus musculus] Length = 428 Score = 117 bits (294), Expect = 4e-24, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 336 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 395 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 396 SKSDKAAALGTKILDEDGLLDLI 418 >gi|62129865|gb|AAX67568.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 502 Score = 117 bits (294), Expect = 5e-24, Method: Composition-based stats. Identities = 98/584 (16%), Positives = 190/584 (32%), Gaps = 91/584 (15%) Query: 48 YDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDL 107 YD L R S P P H + + K+ + + + Sbjct: 2 YDQLSARLVQWQRCVGQDVSS-TPVSP-------PLNGTT--MHPVAHTGVRKLADRQAV 51 Query: 108 RKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACI 167 +++ ++PK+DG +T+ Y+ GK A RG+G GED + I Sbjct: 52 EQWMR-----------GRSELWVQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKI 100 Query: 168 RAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL 227 R IP+IP+ ++GE+++ + +G N R+ +G+L R Sbjct: 101 RLIPSIPQTTQGA-LANAVLQGEIFLQREG-----HIQQRMGGM---NARSKVAGMLMRQ 151 Query: 228 NPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE 287 + L F+ + ++ + L V+ A+ + Sbjct: 152 DNASALNSLGIFIWAWPDGPANMPERLSQLAKAGFSLTNKYTLAVKDASEVERARQSW-- 209 Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347 + S LP+ DG+V ++ + + W+ + K+ ++ I +G Sbjct: 210 ---LTSALPFVTDGVVIRMAKEPASQHWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVG 264 Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407 ++G +T VA L PV + + + DI GD++LV AG Sbjct: 265 KSGKITVVASLVPVILDDKRVQRVNI-----------GSVKRWEAWDIAPGDQILVSLAG 313 Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467 + IP++ +++ R P + C Q Sbjct: 314 QGIPRLDEVVWRSRERSKPV-------------------PPDSHFNSLTCFYASATCQEQ 354 Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527 + RL SR A ++G+G+ ++ + ++ +I N Sbjct: 355 FISRLVWLGSRSALGLDGMGEASWRALHQT----------HRFEHIFSWLALTSAQIANT 404 Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587 GF ++ N R R+I ++ + A A S++ Sbjct: 405 PGFAKGKSEQIWRQFNLARRQPFTRWIMAM---DIPLTQAALQASGDRSWEQLLMRTEQH 461 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 G+ A ++++ NP+ I + L Sbjct: 462 WRQLPAT----------GERRAGRVIDWRDNPQ-IKTLSRWLAA 494 >gi|168050549|ref|XP_001777721.1| predicted protein [Physcomitrella patens subsp. patens] gi|162670941|gb|EDQ57501.1| predicted protein [Physcomitrella patens subsp. patens] Length = 850 Score = 117 bits (294), Expect = 6e-24, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 1/88 (1%) Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-P 694 + + N V +GTL ++R +A+ + G V+ +S+KTD ++ ++ Sbjct: 141 EKEVPQGADDALANLTFVISGTLDSLEREEAEHLIKSHGGRVTGSVSKKTDYLLADEDIG 200 Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 G K +KA++LGVK + E+ ++++ Sbjct: 201 GRKSQKAKELGVKFITEDGLFEMIRKTK 228 >gi|332997449|gb|EGK17065.1| NAD-dependent DNA ligase adenylation domain protein [Shigella flexneri K-218] Length = 505 Score = 117 bits (293), Expect = 6e-24, Method: Composition-based stats. Identities = 98/583 (16%), Positives = 182/583 (31%), Gaps = 93/583 (15%) Query: 43 ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102 + D YD L R F + V H + + K+ Sbjct: 1 MEDGVYDQLSARLTQWQRCF---------VSEPRDVMMPPLNG--AVMHPVAHTGVRKMA 49 Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162 + L ++ W ++PK+DG +T+ Y GK A RG+G GED Sbjct: 50 DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98 Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222 + + I +P+ +S ++GE+++ + + N R +G Sbjct: 99 WTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREG--------HIQQQMGGINARAKVAG 149 Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282 ++ R +D L FV ++ E+ L V+ A+ + Sbjct: 150 LMMRQGNSDTLNSLAVFVWAWPDGPQLMTDRLKELATAGFTLTQRYTRAVKNADEVARVR 209 Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342 + + + K P+ DG+V + + + W+++ K+ + I Sbjct: 210 NEWWKAKL-----PFVTDGVVVRGAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262 Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402 +G++G ++ VA L PV + + + DI GD++L Sbjct: 263 QFAVGKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQIL 311 Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462 V AG+ IP++ + R C Sbjct: 312 VSLAGQGIPRID--------------------DVVWRGAERTKPTPPENRFNPLTCYFAS 351 Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521 C Q + RL S+ ++G+G+ ++ L Q +T Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407 Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 G L+ N RN R++ ++GI A A S+ Sbjct: 408 ------PGIAKSKSAQLWHQFNLARNQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 W L P G A+ ++E+ +N + Sbjct: 459 FSTEQF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 491 >gi|281342306|gb|EFB17890.1| hypothetical protein PANDA_014667 [Ailuropoda melanoleuca] Length = 1119 Score = 117 bits (293), Expect = 6e-24, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 395 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 454 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG I++E+ L L+ Sbjct: 455 SKSDKAAALGTNIIDEDGLLNLI 477 >gi|332997757|gb|EGK17368.1| NAD-dependent DNA ligase adenylation domain protein [Shigella flexneri K-272] gi|333013292|gb|EGK32664.1| NAD-dependent DNA ligase adenylation domain protein [Shigella flexneri K-227] Length = 505 Score = 117 bits (293), Expect = 6e-24, Method: Composition-based stats. Identities = 98/583 (16%), Positives = 183/583 (31%), Gaps = 93/583 (15%) Query: 43 ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102 + D YD L R F + V H + + K+ Sbjct: 1 MEDGVYDQLSARLTQWQRCF---------VSEPRDVMMPPLNG--AVMHPVAHTGVRKMA 49 Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162 + L ++ W ++PK+DG +T+ Y GK A RG+G GED Sbjct: 50 DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98 Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222 + + I +P+ +S ++GE+++ + + N R +G Sbjct: 99 WTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREG--------HIQQQMGGINARAKVAG 149 Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282 ++ R +D L FV ++ E+ L V+ A+ + Sbjct: 150 LMMRQGNSDTLNSLAVFVWAWPDGPQLMTDRLKELATAGFTLTQRYTRAVKNADEVARVR 209 Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342 + + + K P+ DG+V + + + W+++ K+ + I Sbjct: 210 NEWWKAKL-----PFVTDGVVVRGAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262 Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402 +G++G ++ VA L PV + + + DI GD++L Sbjct: 263 QFAVGKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQIL 311 Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462 V AG+ IP++ + R + C Sbjct: 312 VSLAGQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFAS 351 Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521 C Q + RL S+ ++G+G+ ++ L Q +T Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407 Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 G L+ N RN R++ ++GI A A S+ Sbjct: 408 ------PGIAKSKSAQLWHQFNLARNQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 W L P G A+ ++E+ +N + Sbjct: 459 FSTEQF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 491 >gi|73951876|ref|XP_536259.2| PREDICTED: similar to replication factor C large subunit [Canis familiaris] Length = 1145 Score = 117 bits (293), Expect = 6e-24, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 394 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 453 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG I++E+ L L+ Sbjct: 454 SKSDKAAALGTNIIDEDGLLNLI 476 >gi|326919292|ref|XP_003205915.1| PREDICTED: replication factor C subunit 1-like [Meleagris gallopavo] Length = 1212 Score = 117 bits (293), Expect = 6e-24, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 6/121 (4%) Query: 604 VGDIIAQAIVEFYQNPR--NICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTL 658 + A++I R N A + L P + + +E V TG L Sbjct: 421 ISPKKAESISPEDSEKRRSNYQAYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVL 480 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717 + I+R +A+ + + G V+ +S+KT+ +++G + G SK EKA LG KI++E+ L Sbjct: 481 ESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASALGTKIIDEDGLFDL 540 Query: 718 L 718 + Sbjct: 541 V 541 >gi|47210904|emb|CAF94208.1| unnamed protein product [Tetraodon nigroviridis] Length = 775 Score = 117 bits (293), Expect = 6e-24, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 + + +E V TG L+ ++R + + + + G V+ +S+KT ++ G + G Sbjct: 9 KEIPQGAENCLEGCVFVLTGVLESMERDETKSLIERYGGKVTGNISKKTTYLVQGRDCGV 68 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SKLEKA+ LG KI++E+ L L+ Sbjct: 69 SKLEKAESLGTKILDEDGLLELI 91 >gi|296237052|ref|XP_002763589.1| PREDICTED: replication factor C subunit 1, partial [Callithrix jacchus] Length = 827 Score = 117 bits (293), Expect = 7e-24, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 402 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 461 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 462 SKSDKAAALGTKIIDEDGLLNLI 484 >gi|74222286|dbj|BAE26945.1| unnamed protein product [Mus musculus] gi|74226849|dbj|BAE27069.1| unnamed protein product [Mus musculus] Length = 584 Score = 117 bits (293), Expect = 7e-24, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 394 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGHDSGQ 453 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 454 SKSDKAAALGTKILDEDGLLDLI 476 >gi|3342382|gb|AAC40192.1| VIP-receptor-gene repressor protein [Rattus norvegicus] Length = 656 Score = 117 bits (293), Expect = 7e-24, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT +++G + G Sbjct: 392 KEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGNVSKKTSYLVMGRDSGQ 451 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 452 SKSDKAAALGTKILDEDGLLDLI 474 >gi|311262015|ref|XP_003128976.1| PREDICTED: replication factor C subunit 1-like [Sus scrofa] Length = 1039 Score = 117 bits (293), Expect = 7e-24, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 320 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 379 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK KA LG KI++E+ L L+ Sbjct: 380 SKSGKAAALGTKIIDEDGLLNLI 402 >gi|301779603|ref|XP_002925218.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 1-like [Ailuropoda melanoleuca] Length = 1146 Score = 117 bits (293), Expect = 7e-24, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 396 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 455 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG I++E+ L L+ Sbjct: 456 SKSDKAAALGTNIIDEDGLLNLI 478 >gi|313608258|gb|EFR84263.1| DNA ligase, NAD-dependent [Listeria monocytogenes FSL F2-208] Length = 70 Score = 117 bits (293), Expect = 7e-24, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 40/66 (60%) Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 L+K+ R+ A+ + LG VS +S+KTD+++ G + GSKL KA++L + I +EE + Sbjct: 1 KLEKLTRNDAKALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIE 60 Query: 717 LLQQYN 722 L Sbjct: 61 YLPDEG 66 >gi|1399917|gb|AAC60361.1| replication factor C large subunit [Anas platyrhynchos] Length = 1145 Score = 117 bits (292), Expect = 8e-24, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 6/121 (4%) Query: 604 VGDIIAQAIVEFYQNPR--NICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTL 658 + A++++ + N A + L P + + +E V TG L Sbjct: 354 ISPKKAESVIPEDSEKKRNNYQAYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVL 413 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717 + I+R +A+ + + G V+ +S+KT+ +++G + G SK EKA LG KI++E+ L Sbjct: 414 ESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASALGTKIIDEDGLFDL 473 Query: 718 L 718 + Sbjct: 474 V 474 >gi|302564339|ref|NP_001082960.2| replication factor C subunit 1 [Danio rerio] Length = 1147 Score = 117 bits (292), Expect = 9e-24, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 +E V TG L+ ++R +A+ + + G V+ +SRKT +++G + G SK EKA+ G Sbjct: 403 LEGCVFVLTGVLESMERDEAKSLIERYGGKVTGNVSRKTTYLVLGRDSGVSKTEKAESFG 462 Query: 706 VKIMNEEQFLFLL 718 KI+NE++ L L+ Sbjct: 463 TKIINEDELLDLI 475 >gi|555972|gb|AAB60452.1| replication factor C large subunit [Mus musculus] Length = 565 Score = 117 bits (292), Expect = 9e-24, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 394 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 453 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 454 SKSDKAAALGTKILDEDGLLDLI 476 >gi|119613328|gb|EAW92922.1| replication factor C (activator 1) 1, 145kDa, isoform CRA_a [Homo sapiens] Length = 1032 Score = 117 bits (292), Expect = 9e-24, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 281 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 340 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 341 SKSDKAAALGTKIIDEDGLLNLI 363 >gi|194209224|ref|XP_001495351.2| PREDICTED: replication factor C (activator 1) 1, 145kDa [Equus caballus] Length = 1176 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 425 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 484 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 485 SKSDKAAALGTKIIDEDGLLNLI 507 >gi|114593614|ref|XP_001140603.1| PREDICTED: replication factor C large subunit isoform 2 [Pan troglodytes] Length = 1031 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 281 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 340 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 341 SKSDKAAALGTKIIDEDGLLNLI 363 >gi|315282736|ref|ZP_07871076.1| DNA ligase, NAD-dependent [Listeria marthii FSL S4-120] gi|313613623|gb|EFR87427.1| DNA ligase, NAD-dependent [Listeria marthii FSL S4-120] Length = 69 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 40/65 (61%) Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L+K+ R+ A+ + LG VS +S+KTD+++ G + GSKL KA++L + I +EE + Sbjct: 1 LEKLTRNDAKALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEY 60 Query: 718 LQQYN 722 L Sbjct: 61 LPDEG 65 >gi|114593610|ref|XP_001140519.1| PREDICTED: replication factor C large subunit isoform 1 [Pan troglodytes] Length = 1119 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 369 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 428 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 429 SKSDKAAALGTKIIDEDGLLNLI 451 >gi|159029660|emb|CAO87738.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 636 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 50/80 (62%) Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 +++ + + K +V GT KI R +A+ + +G V+ S TD I++G PG KL+ Sbjct: 556 QESAENTLRGKTVVILGTFSKISREQAKSLIINVGGTVTGSPSANTDYILLGKAPGEKLK 615 Query: 700 KAQQLGVKIMNEEQFLFLLQ 719 KAQ+LG+K ++E QFL +++ Sbjct: 616 KAQKLGIKTLSEAQFLQMVE 635 >gi|141795347|gb|AAI39656.1| Zgc:162875 protein [Danio rerio] Length = 529 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 +E V TG L+ ++R +A+ + + G V+ +SRKT +++G + G SK EKA+ G Sbjct: 403 LEGCVFVLTGVLESMERDEAKSLIERYGGKVTGNVSRKTTYLVLGRDSGVSKTEKAESFG 462 Query: 706 VKIMNEEQFLFLL 718 KI+NE++ L L+ Sbjct: 463 TKIINEDELLDLI 475 >gi|114593616|ref|XP_517154.2| PREDICTED: replication factor C large subunit isoform 5 [Pan troglodytes] Length = 1123 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLI 479 >gi|410218|gb|AAA16121.1| replication factor C large subunit [Homo sapiens] Length = 1148 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLI 479 >gi|325296984|ref|NP_001191676.1| replication factor C subunit 1 isoform 2 [Homo sapiens] gi|56757608|sp|P35251|RFC1_HUMAN RecName: Full=Replication factor C subunit 1; AltName: Full=Activator 1 140 kDa subunit; Short=A1 140 kDa subunit; AltName: Full=Activator 1 large subunit; AltName: Full=Activator 1 subunit 1; AltName: Full=DNA-binding protein PO-GA; AltName: Full=Replication factor C 140 kDa subunit; Short=RF-C 140 kDa subunit; Short=RFC140; AltName: Full=Replication factor C large subunit gi|52632416|gb|AAH35297.1| Replication factor C (activator 1) 1, 145kDa [Homo sapiens] gi|119613329|gb|EAW92923.1| replication factor C (activator 1) 1, 145kDa, isoform CRA_b [Homo sapiens] gi|158256656|dbj|BAF84301.1| unnamed protein product [Homo sapiens] Length = 1148 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLI 479 >gi|114593608|ref|XP_001140765.1| PREDICTED: replication factor C subunit 1 isoform 4 [Pan troglodytes] Length = 1148 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLI 479 >gi|32528306|ref|NP_002904.3| replication factor C subunit 1 isoform 1 [Homo sapiens] gi|30354564|gb|AAH51751.1| Replication factor C (activator 1) 1, 145kDa [Homo sapiens] gi|46430941|gb|AAS94325.1| replication factor C (activator 1) 1, 145kDa [Homo sapiens] gi|119613330|gb|EAW92924.1| replication factor C (activator 1) 1, 145kDa, isoform CRA_c [Homo sapiens] gi|168275744|dbj|BAG10592.1| replication factor C subunit 1 [synthetic construct] Length = 1147 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLI 479 >gi|30353858|gb|AAH51786.1| RFC1 protein [Homo sapiens] gi|167774195|gb|ABZ92532.1| replication factor C (activator 1) 1, 145kDa [synthetic construct] Length = 1148 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLI 479 >gi|323173255|gb|EFZ58884.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli LT-68] Length = 505 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 96/582 (16%), Positives = 177/582 (30%), Gaps = 91/582 (15%) Query: 43 ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102 + D YD L R F + V H + + K+ Sbjct: 1 MEDGVYDQLSARLTQWQRCF---------VSEPRDVMMPPLNG--AVMHPVAHTGVRKMA 49 Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162 + L ++ W ++PK+DG +T+ Y GK A RG+G GED Sbjct: 50 DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98 Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222 + + I +P+ +S ++GE+++ + + N R +G Sbjct: 99 WTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREG--------HIQQQMGGINARTKVAG 149 Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282 ++ R +D L FV ++ E+ L V+ A+ + Sbjct: 150 LMMRQGNSDTLNSLAVFVWAWPDGPQLMTDRLKELATAGFTLTQRYTRAVKNADEVARVR 209 Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342 + + + K P+ DG+V + + + W+++ K+ + I Sbjct: 210 NEWWKAKL-----PFVTDGVVVRGAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262 Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402 +G++G ++ VA L PV + + + DI GD++L Sbjct: 263 QFAVGKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQIL 311 Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462 V AG+ IP++ D++ + + A Sbjct: 312 VSLAGQGIPRIDDVVWRG--------------AERTKPTPPENRFNSLTCYFASDVCQEQ 357 Query: 463 ACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT 522 S K + D G F+ L Q +T Sbjct: 358 FISRLVWLGSKQVLGLDGIGGAGWRALHQTHRFE---------HIFSWLLLTPEQLQNT- 407 Query: 523 KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582 G L+ N RN R++ ++GI A A S+ Sbjct: 408 -----PGIAKSKSAQLWHQFNLARNQPFTRWVMAMGI---PLTRAALNASDERSWSQLLF 459 Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 W L P G A+ ++E+ +N + Sbjct: 460 STEQF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 491 >gi|291385663|ref|XP_002709319.1| PREDICTED: germ line transcription factor 1-like [Oryctolagus cuniculus] Length = 1152 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 420 KEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 479 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG I++E+ L L+ Sbjct: 480 SKSDKAAALGTNIIDEDGLLNLI 502 >gi|332996128|gb|EGK15755.1| NAD-dependent DNA ligase adenylation domain protein [Shigella flexneri VA-6] Length = 505 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 97/583 (16%), Positives = 182/583 (31%), Gaps = 93/583 (15%) Query: 43 ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102 + D YD L R F + V H + + K+ Sbjct: 1 MEDGVYDQLSARLTQWQRCF---------VSEPRDVMMPPLNG--AVMHPVAHTGVRKMA 49 Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162 + L ++ W ++PK+DG +T+ Y GK A RG+G GED Sbjct: 50 DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98 Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222 + + I +P+ +S ++GE+++ + + N R +G Sbjct: 99 WTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREG--------HIQQQMGGINARAKVAG 149 Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282 ++ R +D L FV ++ E+ L V+ A+ + Sbjct: 150 LMMRQGNSDTLNSLAVFVWAWPDGPQLMTDRLKELATAGFTLTQRYTRAVKNADEVARVR 209 Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342 + + + K P+ DG+V + + + W+++ K+ + I Sbjct: 210 NEWWKAKL-----PFVTDGVVVRGAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262 Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402 +G++G ++ VA L PV + + + DI GD++L Sbjct: 263 QFAVGKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQIL 311 Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462 V G+ IP++ + R + C Sbjct: 312 VSLGGQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFAS 351 Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521 C Q + RL S+ ++G+G+ ++ L Q +T Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407 Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 G L+ N RN R++ ++GI A A S+ Sbjct: 408 ------PGIAKSKSAQLWHQFNLARNQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 W L P G A+ ++E+ +N + Sbjct: 459 FSTEQF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 491 >gi|296908|emb|CAA80355.1| PO-GA [Homo sapiens] gi|2827257|gb|AAB99788.1| DNA binding protein [Homo sapiens] Length = 1147 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLI 479 >gi|114593612|ref|XP_001140686.1| PREDICTED: replication factor C large subunit isoform 3 [Pan troglodytes] Length = 978 Score = 116 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLI 479 >gi|109074009|ref|XP_001091287.1| PREDICTED: replication factor C subunit 1 isoform 3 [Macaca mulatta] Length = 1148 Score = 116 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLI 479 >gi|332218978|ref|XP_003258636.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 1-like [Nomascus leucogenys] Length = 1148 Score = 116 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLI 479 >gi|297467831|ref|XP_002705355.1| PREDICTED: germ line transcription factor 1-like, partial [Bos taurus] Length = 183 Score = 116 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G SK +KA LG Sbjct: 6 LEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALG 65 Query: 706 VKIMNEEQFLFLL 718 I++E+ L L+ Sbjct: 66 TNIIDEDGLLNLI 78 >gi|237800438|ref|ZP_04588899.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806426|ref|ZP_04593130.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023297|gb|EGI03354.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027539|gb|EGI07594.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str. 1_6] Length = 70 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 41/70 (58%) Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++E+ L Sbjct: 1 SLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLK 60 Query: 717 LLQQYNTTLR 726 L + + Sbjct: 61 RLTELGVAVD 70 >gi|313647479|gb|EFS11929.1| NAD-dependent DNA ligase adenylation domain protein [Shigella flexneri 2a str. 2457T] gi|332749898|gb|EGJ80310.1| NAD-dependent DNA ligase adenylation domain protein [Shigella flexneri K-671] gi|332764151|gb|EGJ94388.1| DNA ligase [Shigella flexneri 2930-71] gi|333012849|gb|EGK32226.1| NAD-dependent DNA ligase adenylation domain protein [Shigella flexneri K-304] Length = 505 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 97/583 (16%), Positives = 181/583 (31%), Gaps = 93/583 (15%) Query: 43 ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102 + D YD L R F + V H + + K+ Sbjct: 1 MEDGVYDQLSARLTQWQRCF---------VSEPRDVMMPPLNG--AVMHPVAHTGVRKMA 49 Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162 + L ++ W ++PK+DG +T+ Y GK A RG+G GED Sbjct: 50 DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98 Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222 + + I + + +S ++GE+++ + + N R +G Sbjct: 99 WTQKVSLISAVLQTVSGP-LANSTLQGEIFLQREG--------HIQQQMGGINARAKVAG 149 Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282 ++ R +D L FV ++ E+ L V+ A+ + Sbjct: 150 LMMRQGNSDTLNSLAVFVWAWPDGPQLMTDRLKELATAGFTLTQRYTRAVKNADEVARVR 209 Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342 + + + K P+ DG+V + + + W+++ K+ + I Sbjct: 210 NEWWKAKL-----PFVTDGVVVRGAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262 Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402 +G++G ++ VA L PV + + + DI GD++L Sbjct: 263 QFAVGKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQIL 311 Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462 V AG+ IP++ + R C Sbjct: 312 VSLAGQGIPRID--------------------DVVWRGAERTKPTPPENRFNPLTCYFAS 351 Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521 C Q + RL S+ ++G+G+ ++ L Q +T Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407 Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 G L+ N RN R++ ++GI A A S+ Sbjct: 408 ------PGIAKSKSAQLWHQFNLARNQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 W L P G A+ ++E+ +N + Sbjct: 459 FSTEQF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 491 >gi|149640658|ref|XP_001512744.1| PREDICTED: similar to Replication factor C (activator 1) 1, 145kDa [Ornithorhynchus anatinus] Length = 1233 Score = 115 bits (288), Expect = 3e-23, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 + + +E V TG L+ I+R +A+ + + G V+ +S++T +++G + G Sbjct: 480 KEIPQGAENCLEGLTFVITGVLESIERDEAKCLIERHGGKVTGNVSKRTSYLVMGRDSGQ 539 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 540 SKSDKASALGTKIIDEDGLLNLI 562 >gi|1335208|emb|CAA49475.1| LLDBP [Homo sapiens] Length = 521 Score = 114 bits (286), Expect = 4e-23, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 286 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 345 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 346 SKSDKAAALGTKIIDEDGLLNLI 368 >gi|57530056|ref|NP_001006456.1| replication factor C subunit 1 [Gallus gallus] gi|53130644|emb|CAG31651.1| hypothetical protein RCJMB04_9c6 [Gallus gallus] Length = 1147 Score = 114 bits (286), Expect = 5e-23, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 6/121 (4%) Query: 604 VGDIIAQAIVEFYQNP--RNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTL 658 + A++I N A + L P + + +E V TG L Sbjct: 356 ISPKKAESISPEDSEKGRNNYQAYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVL 415 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717 + I+R +A+ + + G V+ +S+KT+ +++G + G SK EKA LG KI++E+ L Sbjct: 416 ESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASTLGTKIIDEDGLFDL 475 Query: 718 L 718 + Sbjct: 476 V 476 >gi|118118702|ref|XP_001236329.1| PREDICTED: hypothetical protein, partial [Gallus gallus] Length = 255 Score = 114 bits (285), Expect = 6e-23, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 6/121 (4%) Query: 604 VGDIIAQAIVEFYQNPR--NICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTL 658 + A++I R N A + L P + + +E V TG L Sbjct: 118 ISPKKAESISPEDSEKRRNNYQAYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVL 177 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717 + I+R +A+ + + G V+ +S+KT+ +++G + G SK EKA LG KI++E+ L Sbjct: 178 ESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASTLGTKIIDEDGLFDL 237 Query: 718 L 718 + Sbjct: 238 V 238 >gi|4103934|gb|AAD01890.1| replication factor C [Rattus norvegicus] Length = 1104 Score = 114 bits (285), Expect = 6e-23, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-DNPG 695 K + +E V TG L+ I+R +A+ + + G V+ +S+KT +++G D+ Sbjct: 394 KEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGNVSKKTSYLVMGRDSRQ 453 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK +KA LG KI++E+ L L+ Sbjct: 454 SKSDKAAALGTKILDEDGLLDLI 476 >gi|224050004|ref|XP_002189560.1| PREDICTED: replication factor C (activator 1) 1, 145kDa [Taeniopygia guttata] Length = 1142 Score = 114 bits (284), Expect = 7e-23, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 + + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G Sbjct: 387 KEIPQGAENCLEGLTFVITGVLECIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQ 446 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SK EKA LG KI++E+ L+ Sbjct: 447 SKCEKASTLGTKIIDEDGLFDLI 469 >gi|157117839|ref|XP_001653061.1| replication factor C large subunit, putative [Aedes aegypti] gi|108883325|gb|EAT47550.1| replication factor C large subunit, putative [Aedes aegypti] Length = 1047 Score = 113 bits (283), Expect = 8e-23, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 50/96 (52%), Gaps = 3/96 (3%) Query: 630 KEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 ++ + G E + + V TG L+ ++R + + + G V +S+K Sbjct: 262 RQGPANPGSKEIPKGKPDCLAGLQFVVTGVLESMERDECAQVIKDFGGKVVGSVSKKLTH 321 Query: 688 IIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722 ++VG++ G SKL KA +LG+ ++E+ L L+++ + Sbjct: 322 MVVGEDAGPSKLAKADELGIPQISEDDLLDLIREKS 357 >gi|313760612|ref|NP_001186496.1| replication factor C (activator 1) 1, 145kDa [Xenopus (Silurana) tropicalis] Length = 1144 Score = 113 bits (283), Expect = 9e-23, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGV 706 E V TG L+ I+R +A+ V + G V+ +S+KT+ II+G + G SK EKA+ G Sbjct: 397 EGLTFVITGVLESIERDEAKSLVERYGGKVTGNVSKKTNYIIMGRDAGVSKQEKAEAFGT 456 Query: 707 KIMNEEQFLFLL 718 KI++E+ L L+ Sbjct: 457 KILDEDGLLNLI 468 >gi|330969182|gb|EGH69248.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aceris str. M302273PT] Length = 68 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 33/64 (51%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696 + + + V TG+L+++ R A+E + LGA VS +S KT ++ G GS Sbjct: 5 SEKKTVEGLPLAGQTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGS 64 Query: 697 KLEK 700 KL K Sbjct: 65 KLTK 68 >gi|327273243|ref|XP_003221390.1| PREDICTED: replication factor C subunit 1-like [Anolis carolinensis] Length = 1124 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 +E V TG L+ I+R +A+ + + G V+ +S+KT+ ++ G + G SK EKA LG Sbjct: 389 LEGMTFVITGVLESIERDEAKSLIERYGGKVTGNISKKTNFLVKGRDCGLSKCEKASALG 448 Query: 706 VKIMNEEQFLFLLQQ 720 KI++E+ L+Q+ Sbjct: 449 TKIIDEDGLFDLIQK 463 >gi|321469644|gb|EFX80623.1| hypothetical protein DAPPUDRAFT_318220 [Daphnia pulex] Length = 1045 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 +P + + +V TG L+ + R +A+ V + G +S+ T ++ GD Sbjct: 287 NPGSKPVPEGAPGCLTGLTIVVTGVLESLHREEAEGLVKKYGGKAPKAVSKNTSYLLAGD 346 Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + G SKL KA+ L V +++E+ FL L+ Sbjct: 347 DAGPSKLSKAKDLNVPMLSEDDFLKLIA 374 >gi|166366736|ref|YP_001659009.1| hypothetical protein MAE_39950 [Microcystis aeruginosa NIES-843] gi|166089109|dbj|BAG03817.1| unknown protein [Microcystis aeruginosa NIES-843] Length = 654 Score = 112 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 51/80 (63%) Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 +++ + + K +V GT KI R KA+ + +G V++ S TD I++G PG KL+ Sbjct: 574 QESAENTLRGKSVVILGTFSKISREKAKSLIINVGGTVTSSPSANTDYILLGKAPGEKLK 633 Query: 700 KAQQLGVKIMNEEQFLFLLQ 719 KAQ+LG+K ++E QFL +++ Sbjct: 634 KAQKLGIKTLSEAQFLQMVE 653 >gi|89268749|emb|CAJ82643.1| replication factor C (activator 1) 1 [Xenopus (Silurana) tropicalis] Length = 510 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGV 706 E V TG L+ I+R +A+ V + G V+ +S+KT+ II+G + G SK EKA+ G Sbjct: 397 EGLTFVITGVLESIERDEAKSLVERYGGKVTGNVSKKTNYIIMGRDAGVSKQEKAEAFGT 456 Query: 707 KIMNEEQFLFLL 718 KI++E+ L L+ Sbjct: 457 KILDEDGLLNLI 468 >gi|222616174|gb|EEE52306.1| hypothetical protein OsJ_34316 [Oryza sativa Japonica Group] Length = 929 Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 6/104 (5%) Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 P G E + + V +GTL ++R +A + + + G V+ +S+KT+ ++ Sbjct: 238 PHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEATDLIKRYGGRVTGSISKKTNYLLAD 297 Query: 692 DNPGS-KLEKAQQLGVKIMNEEQFLFLLQQ---YNTTLRIHDDD 731 ++ G K KA++LGV + E+ ++++ T+ H D Sbjct: 298 EDVGGVKSNKAKELGVPFLTEDGLFDMIRKSKPAKATVAKHQSD 341 >gi|218185964|gb|EEC68391.1| hypothetical protein OsI_36544 [Oryza sativa Indica Group] Length = 1014 Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 6/104 (5%) Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 P G E + + V +GTL ++R +A + + + G V+ +S+KT+ ++ Sbjct: 240 PHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEATDLIKRYGGRVTGSISKKTNYLLAD 299 Query: 692 DNPGS-KLEKAQQLGVKIMNEEQFLFLLQQ---YNTTLRIHDDD 731 ++ G K KA++LGV + E+ ++++ T+ H D Sbjct: 300 EDVGGVKSNKAKELGVPFLTEDGLFDMIRKSKPAKATVAKHQSD 343 >gi|115485959|ref|NP_001068123.1| Os11g0572100 [Oryza sativa Japonica Group] gi|108864532|gb|ABA94349.2| BRCA1 C Terminus domain containing protein, expressed [Oryza sativa Japonica Group] gi|113645345|dbj|BAF28486.1| Os11g0572100 [Oryza sativa Japonica Group] gi|215697840|dbj|BAG92033.1| unnamed protein product [Oryza sativa Japonica Group] Length = 1021 Score = 111 bits (278), Expect = 3e-22, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 6/104 (5%) Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 P G E + + V +GTL ++R +A + + + G V+ +S+KT+ ++ Sbjct: 247 PHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEATDLIKRYGGRVTGSISKKTNYLLAD 306 Query: 692 DNPGS-KLEKAQQLGVKIMNEEQFLFLLQQ---YNTTLRIHDDD 731 ++ G K KA++LGV + E+ ++++ T+ H D Sbjct: 307 EDVGGVKSNKAKELGVPFLTEDGLFDMIRKSKPAKATVAKHQSD 350 >gi|30314655|dbj|BAC76085.1| replication factor C 110 kDa subunit [Oryza sativa Japonica Group] Length = 1021 Score = 111 bits (278), Expect = 4e-22, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 6/104 (5%) Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 P G E + + V +GTL ++R +A + + + G V+ +S+KT+ ++ Sbjct: 247 PHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEATDLIKRYGGRVTGSISKKTNYLLAD 306 Query: 692 DNPGS-KLEKAQQLGVKIMNEEQFLFLLQQ---YNTTLRIHDDD 731 ++ G K KA++LGV + E+ ++++ T+ H D Sbjct: 307 EDVGGVKSNKAKELGVPFLTEDGLFDMIRKSKPAKATVAKHQSD 350 >gi|312282245|dbj|BAJ33988.1| unnamed protein product [Thellungiella halophila] Length = 933 Score = 110 bits (275), Expect = 9e-22, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 3/88 (3%) Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 P G E + + V +GTL ++R +A++ + + G V+ +S+KT ++ Sbjct: 165 PHKGEKEVPEGNPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTTYLLCD 224 Query: 692 DN-PGSKLEKAQQLGVKIMNEEQFLFLL 718 ++ G K EKA++LG K + E+ ++ Sbjct: 225 EDIGGRKSEKAKELGTKFLTEDGLFDMI 252 >gi|170065938|ref|XP_001868075.1| replication factor C large subunit [Culex quinquefasciatus] gi|167862647|gb|EDS26030.1| replication factor C large subunit [Culex quinquefasciatus] Length = 1042 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 50/94 (53%), Gaps = 3/94 (3%) Query: 630 KEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 ++ + G E + + + V TG ++ ++R + + + G V +S+K Sbjct: 254 RQGPANPGSKEIPKGTPTCLAGLQFVVTGVMESMERDECAQVIKDFGGKVVTSVSKKLTH 313 Query: 688 IIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++VG++ G SKL KA +LG+ ++E+Q L+++ Sbjct: 314 MVVGEDAGPSKLAKADELGIPQISEDQLFDLIRE 347 >gi|19173693|ref|NP_597496.1| DNA REPLICATION FACTOR C SUBUNIT [Encephalitozoon cuniculi GB-M1] gi|19170899|emb|CAD26673.1| DNA REPLICATION FACTOR C SUBUNIT [Encephalitozoon cuniculi GB-M1] Length = 568 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 2/82 (2%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQL 704 ++ K VFTG + KI R A+ V LG +A+ S KT ++ GDNPG SK++KA++L Sbjct: 7 PLKGKVFVFTGDM-KISRDDAKTKVMVLGGRCTAVPSSKTTFLVAGDNPGPSKMQKAKEL 65 Query: 705 GVKIMNEEQFLFLLQQYNTTLR 726 G+K+++EE+F L++ + L Sbjct: 66 GIKVLDEEEFDSLIKDTSKALD 87 >gi|321264327|ref|XP_003196881.1| DNA replication activator 1 subunit1 (Replication factor C subunit 1) [Cryptococcus gattii WM276] gi|317463358|gb|ADV25094.1| DNA replication activator 1 subunit1 (Replication factor C subunit 1), putative [Cryptococcus gattii WM276] Length = 991 Score = 109 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG ++ + R AQE V + V+ S KT ++VG+N G SKL K ++ Sbjct: 266 LAGLTFVFTGEMESLGREDAQELVRRYSGKVTTAPSGKTSYVVVGENAGVSKLNKVKEKK 325 Query: 706 VKIMNEEQFLFLLQQ 720 + +++E++FL L++Q Sbjct: 326 IPMIDEDEFLELIRQ 340 >gi|159477641|ref|XP_001696917.1| DNA replication factor C complex subunit 1 [Chlamydomonas reinhardtii] gi|158274829|gb|EDP00609.1| DNA replication factor C complex subunit 1 [Chlamydomonas reinhardtii] Length = 1182 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 3/88 (3%) Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 P+ G E + K V +G L + R +A +Y+ + G V+ +S KT ++VG Sbjct: 375 PNQGNKEAPRGHPDCLTGKTFVISGVLDSLGREEATDYIKRHGGRVTGAVSGKTSFLVVG 434 Query: 692 DNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G SK KA++ G K+++E+ L+ Sbjct: 435 HHTGRSKYRKAREHGTKVIDEDGLFSLI 462 >gi|146229|gb|AAB88710.1| ORF; putative [Escherichia coli] Length = 218 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 87/224 (38%), Gaps = 31/224 (13%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 23 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 76 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 77 ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 121 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S ++ Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 179 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI 232 GE+++ + + N R +G++ R + +D Sbjct: 180 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDT 215 >gi|16329814|ref|NP_440542.1| DNA ligase [Synechocystis sp. PCC 6803] gi|1652299|dbj|BAA17222.1| DNA ligase [Synechocystis sp. PCC 6803] Length = 562 Score = 109 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 32/87 (36%), Positives = 50/87 (57%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 + + + + KK+V GTL + R +A+ + +GA + S KTD I+VG Sbjct: 476 VATVPSNEEGAHPLAEKKVVILGTLNAMNREEAKTRLQNVGAECTGTPSGKTDYIVVGKA 535 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 PG+KL+KAQ+LG+ ++E QFL LL Sbjct: 536 PGAKLKKAQKLGIAQLSEAQFLELLGD 562 >gi|58260802|ref|XP_567811.1| purine nucleotide binding protein [Cryptococcus neoformans var. neoformans JEC21] gi|134117247|ref|XP_772850.1| hypothetical protein CNBK2210 [Cryptococcus neoformans var. neoformans B-3501A] gi|50255468|gb|EAL18203.1| hypothetical protein CNBK2210 [Cryptococcus neoformans var. neoformans B-3501A] gi|57229892|gb|AAW46294.1| purine nucleotide binding protein, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 1001 Score = 109 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG ++ + R AQE V + V+ S KT ++VG+N G SKL K ++ Sbjct: 274 LAGLTFVFTGEMESLGREDAQELVRRYSGKVTTAPSGKTSYVVVGENAGVSKLNKVKEKK 333 Query: 706 VKIMNEEQFLFLLQQ 720 + ++NE++FL L++Q Sbjct: 334 IPMINEDEFLELIRQ 348 >gi|34764321|ref|ZP_00145153.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27885903|gb|EAA23247.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 68 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 41/65 (63%) Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 K +FTGTL+ R + +E + +LG + +S+ D +IVG+ GSKL+KAQ+ +K + Sbjct: 4 KNFLFTGTLKHFTREQIKEEIEKLGGKNLSSVSKNLDYLIVGEKAGSKLKKAQRSTIKNI 63 Query: 710 NEEQF 714 EE+ Sbjct: 64 TEEEL 68 >gi|300939287|ref|ZP_07153961.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli MS 21-1] gi|300455794|gb|EFK19287.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli MS 21-1] Length = 209 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 23/190 (12%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S+ +A++E+S L+Q+I DD Y++ K + D YD L R F + R Sbjct: 23 CPAWSLARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETRD 82 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 V H + + K+ + L ++ W Sbjct: 83 AMM---------PPLNG--AVMHPVAHTGVSKMADKNALSLWMRERSDLW---------- 121 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + +R I +PR +S ++ Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTHKVRLISAVPRTVSGP-LANSTLQ 179 Query: 189 GEVYISKNDF 198 GE+++ + Sbjct: 180 GEIFLKREGH 189 >gi|332084490|gb|EGI89685.1| NAD-dependent DNA ligase adenylation domain protein [Shigella dysenteriae 155-74] gi|332084829|gb|EGI90012.1| NAD-dependent DNA ligase adenylation domain protein [Shigella boydii 5216-82] Length = 195 Score = 108 bits (269), Expect = 4e-21, Method: Composition-based stats. Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 23/190 (12%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + V H + + K+ + L ++ W Sbjct: 76 ---GNETRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMREHSDLW---------- 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S ++ Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 178 Query: 189 GEVYISKNDF 198 GE+++ + Sbjct: 179 GEIFLKREGH 188 >gi|323182437|gb|EFZ67841.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli 1357] Length = 469 Score = 108 bits (269), Expect = 4e-21, Method: Composition-based stats. Identities = 86/511 (16%), Positives = 164/511 (32%), Gaps = 71/511 (13%) Query: 115 YRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 ++PK+DG +T+ Y GK A RG+G GED + + I +P Sbjct: 15 KNALSLWMRERSDLWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVP 74 Query: 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR 234 + +S ++GE+++ + + N R +G++ R + +D Sbjct: 75 QTVSGP-LANSTLQGEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLN 125 Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 L FV ++ E+ L V+ A+ + + + + K Sbjct: 126 SLGVFVWAWPDGPQLMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL---- 181 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 P+ DG+V + + + W+++ K+ + I +G++G ++ Sbjct: 182 -PFVTDGVVVRGAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISV 238 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VA L PV + + + DI GD++LV AG+ IP++ Sbjct: 239 VASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID 287 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLK 473 + R + C C Q + RL Sbjct: 288 --------------------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLV 327 Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533 S+ ++G+G+ ++ L Q +T G Sbjct: 328 WLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKS 377 Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593 L+ N R R++ ++GI A A S+ Sbjct: 378 KSAQLWHQFNLARKQPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF------ 428 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 W L P G A+ ++E+ +N + Sbjct: 429 -WQQL---PGTGSGRARQVIEWKENAQIKKL 455 >gi|303389467|ref|XP_003072966.1| DNA replication factor C subunit [Encephalitozoon intestinalis ATCC 50506] gi|303302109|gb|ADM11606.1| DNA replication factor C subunit [Encephalitozoon intestinalis ATCC 50506] Length = 566 Score = 107 bits (268), Expect = 5e-21, Method: Composition-based stats. Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 2/75 (2%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQL 704 ++ K VFTG + K+ R A+ V LG + S KT ++VGDNPG K++KA +L Sbjct: 7 PLKGKVFVFTGDM-KMSRDDAKARVMVLGGRCTTAPSSKTSFLVVGDNPGPMKIQKANEL 65 Query: 705 GVKIMNEEQFLFLLQ 719 +KI+NEE+F+ L++ Sbjct: 66 NIKILNEEEFVKLVE 80 >gi|18376023|emb|CAB91757.2| related to replication factor C protein [Neurospora crassa] Length = 1092 Score = 107 bits (268), Expect = 5e-21, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + K VFTG L+ I R +AQ V + G V+ S KTD +++GD+ G SKL K ++ G Sbjct: 344 LAGKTFVFTGLLKTIAREEAQALVKRYGGKVTGAPSSKTDFVVLGDDAGPSKLRKIKEHG 403 Query: 706 VKIMNEEQFLFLL 718 +K ++EE +L+ Sbjct: 404 IKTIDEEGLFYLI 416 >gi|164424568|ref|XP_963539.2| hypothetical protein NCU06767 [Neurospora crassa OR74A] gi|157070569|gb|EAA34303.2| hypothetical protein NCU06767 [Neurospora crassa OR74A] Length = 1086 Score = 107 bits (268), Expect = 6e-21, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + K VFTG L+ I R +AQ V + G V+ S KTD +++GD+ G SKL K ++ G Sbjct: 338 LAGKTFVFTGLLKTIAREEAQALVKRYGGKVTGAPSSKTDFVVLGDDAGPSKLRKIKEHG 397 Query: 706 VKIMNEEQFLFLL 718 +K ++EE +L+ Sbjct: 398 IKTIDEEGLFYLI 410 >gi|242068901|ref|XP_002449727.1| hypothetical protein SORBIDRAFT_05g022200 [Sorghum bicolor] gi|241935570|gb|EES08715.1| hypothetical protein SORBIDRAFT_05g022200 [Sorghum bicolor] Length = 946 Score = 107 bits (267), Expect = 6e-21, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 3/92 (3%) Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 P G E + + V +GTL ++R +A + + + G V+ +S+KT ++ Sbjct: 236 PHKGEKEVPEGAPDCLSGLTFVISGTLDSLEREEATDLIKRYGGRVTGSISKKTSYLLAD 295 Query: 692 DNPGS-KLEKAQQLGVKIMNEEQFLFLLQQYN 722 ++ G K KA+ LGV + E+ L+++ Sbjct: 296 EDIGGVKSNKAKDLGVPFLTEDGLFDLIRKSK 327 >gi|297812313|ref|XP_002874040.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata] gi|297319877|gb|EFH50299.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata] Length = 960 Score = 107 bits (267), Expect = 7e-21, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 3/88 (3%) Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 P G E + + V +GTL ++R +A++ + + G ++ +S+KT ++ Sbjct: 196 PHKGEKEVPEGTPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGSVSKKTTYLLCD 255 Query: 692 DN-PGSKLEKAQQLGVKIMNEEQFLFLL 718 ++ G K EKA++LG K + E+ ++ Sbjct: 256 EDIGGRKSEKAKELGTKFLTEDGLFDMI 283 >gi|242049958|ref|XP_002462723.1| hypothetical protein SORBIDRAFT_02g030910 [Sorghum bicolor] gi|241926100|gb|EER99244.1| hypothetical protein SORBIDRAFT_02g030910 [Sorghum bicolor] Length = 1025 Score = 107 bits (266), Expect = 9e-21, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 3/92 (3%) Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 P G E + + V +GTL ++R +A + + + G V+ +S+KT ++ Sbjct: 251 PHKGEKEVPEGAPDCLSGLTFVISGTLDSLEREEAADLIKRYGGRVTGSISKKTSYLLAD 310 Query: 692 DNPGS-KLEKAQQLGVKIMNEEQFLFLLQQYN 722 ++ G K KA+ LGV + E+ L+++ Sbjct: 311 EDLGGVKSNKAKDLGVPFLTEDGLFDLIRKSK 342 >gi|302694127|ref|XP_003036742.1| hypothetical protein SCHCODRAFT_46550 [Schizophyllum commune H4-8] gi|300110439|gb|EFJ01840.1| hypothetical protein SCHCODRAFT_46550 [Schizophyllum commune H4-8] Length = 862 Score = 107 bits (266), Expect = 9e-21, Method: Composition-based stats. Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 1/99 (1%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 P + + VFTG L R +A E + G V+ S KTD +++GDN Sbjct: 185 PGSKEVPDGAPNALAGLAFVFTGELSAFSRDEAVELAKRFGGRVTGQPSGKTDYVVLGDN 244 Query: 694 PG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731 G SKL ++ G+K +NE++FL L+ N ++ D+ Sbjct: 245 AGDSKLRAIKKHGLKTLNEDEFLALVGSRNKDGKMKVDE 283 >gi|304728|gb|AAA28573.1| transcription factor [Drosophila melanogaster] Length = 986 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 3/91 (3%) Query: 635 SIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + G E S + V TG L+ ++R +A+ + + G V ++ +K ++VG+ Sbjct: 223 NPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGE 282 Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722 G KL A++L + I++E+ L+++ + Sbjct: 283 EAGPKKLAVAEELNIPILSEDGLFDLIREKS 313 >gi|62472391|ref|NP_001014605.1| germ line transcription factor 1, isoform B [Drosophila melanogaster] gi|21483228|gb|AAM52589.1| AT18625p [Drosophila melanogaster] gi|61679311|gb|AAX52937.1| germ line transcription factor 1, isoform B [Drosophila melanogaster] Length = 1008 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 3/91 (3%) Query: 635 SIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + G E S + V TG L+ ++R +A+ + + G V ++ +K ++VG+ Sbjct: 223 NPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGE 282 Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722 G KL A++L + I++E+ L+++ + Sbjct: 283 EAGPKKLAVAEELNIPILSEDGLFDLIREKS 313 >gi|17737765|ref|NP_524229.1| germ line transcription factor 1, isoform A [Drosophila melanogaster] gi|12644230|sp|P35600|RFC1_DROME RecName: Full=Replication factor C subunit 1; AltName: Full=Activator 1 140 kDa subunit; AltName: Full=Activator 1 subunit 1; AltName: Full=Germline transcription factor 1; AltName: Full=Replication factor C large subunit gi|2121267|gb|AAB58311.1| replication factor C large subunit [Drosophila melanogaster] gi|7296805|gb|AAF52082.1| germ line transcription factor 1, isoform A [Drosophila melanogaster] gi|28317228|gb|AAO39621.1| GH06471p [Drosophila melanogaster] Length = 986 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 3/91 (3%) Query: 635 SIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + G E S + V TG L+ ++R +A+ + + G V ++ +K ++VG+ Sbjct: 223 NPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGE 282 Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722 G KL A++L + I++E+ L+++ + Sbjct: 283 EAGPKKLAVAEELNIPILSEDGLFDLIREKS 313 >gi|213622411|ref|ZP_03375194.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 445 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 91/504 (18%), Positives = 175/504 (34%), Gaps = 70/504 (13%) Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 ++PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ Sbjct: 6 ELWVQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAV 64 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246 ++GE+++ + +G N R+ A+G+L R + L F+ Sbjct: 65 LQGEIFLQREG-----HIQQRMGGM---NARSKAAGMLMRQDNASALNSLGIFIWAWPDG 116 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + ++ + L + V+ A+ + + S LP+ DG+V ++ Sbjct: 117 PANMPERLSQLAKAGFSLTKKYSLAVKDASEVERARQSW-----LTSALPFVTDGVVIRM 171 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + W+ + K+ ++ I +G++G +T VA L PV + Sbjct: 172 AKEPASQYWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDK 229 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + + DI GD++LV AG+ IP++ +++ R Sbjct: 230 RVQRVNI-----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKP 278 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P + C Q + RL SR A ++G+ Sbjct: 279 V-------------------PPGSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGM 319 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G+ ++ + ++ +I N G ++ N R Sbjct: 320 GEASWRALHQT----------HRFEHIFSWLALTSAQIANTPGVAKGKSEQIWRQFNLAR 369 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 S R+I ++ + A A S++ G+ Sbjct: 370 RQSFTRWIMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GE 416 Query: 607 IIAQAIVEFYQNPRNICAVEALLK 630 A ++++ NP+ I A+ L Sbjct: 417 RRAGRVIDWRNNPQ-INALSRWLA 439 >gi|322695637|gb|EFY87442.1| putative replication factor C protein [Metarhizium acridum CQMa 102] Length = 1062 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG LQ I R +AQ V + G V+ S KT +++GD+ G SKL K + G Sbjct: 342 LSGLSFVFTGVLQTIGRDEAQALVKRYGGKVTGQPSSKTSFVVLGDDAGPSKLAKIKSHG 401 Query: 706 VKIMNEEQFLFLLQQ 720 +K ++E L+++ Sbjct: 402 IKTIDENGLFDLIRK 416 >gi|255018737|ref|ZP_05290863.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL F2-515] Length = 223 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 87/234 (37%), Positives = 137/234 (58%), Gaps = 12/234 (5%) Query: 176 VLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TR 234 + L IEVRGE ++ K F LN+ G+ +ANPRNAA+G LR+L+ +R Sbjct: 1 PMKLQKDYSIEVRGEAFMPKRSFQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASR 60 Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 L+ F++ + E+ + L+ + LG VN R ++ + +Y +E R+ Sbjct: 61 NLDIFLYAVADFGEMGVETHSAGLEMLETLGLKVNKERRLCSSLEEVYAYIDEWTEKRAD 120 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L YDIDG+V K++ Q+Q+G +SPRW I++KF ++ T+LLDI++ +GRTG++TP Sbjct: 121 LAYDIDGIVLKLNNLEQQRQMGTTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITP 180 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408 A LEPV + G ++ A+LHNED + +DIR+GD VL+K+AG+ Sbjct: 181 TAVLEPVRVAGTTVSRASLHNED-----------LITEKDIRIGDTVLIKKAGD 223 >gi|322705232|gb|EFY96819.1| putative replication factor C protein [Metarhizium anisopliae ARSEF 23] Length = 1030 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG LQ I R +AQ V + G V+ S KT +++GD+ G SKL K + G Sbjct: 308 LSGLSFVFTGVLQTIGRDEAQALVKRYGGKVTGQPSSKTSFVVLGDDAGPSKLAKIKSHG 367 Query: 706 VKIMNEEQFLFLLQQ 720 +K ++E L+++ Sbjct: 368 IKTIDENGLFDLIRK 382 >gi|238764311|ref|ZP_04625262.1| DNA ligase B [Yersinia kristensenii ATCC 33638] gi|238697462|gb|EEP90228.1| DNA ligase B [Yersinia kristensenii ATCC 33638] Length = 243 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 76/195 (38%), Gaps = 22/195 (11%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 S E+ E++ LE+++ D Y+Q ++ D+ YD L+ + Sbjct: 26 CTKWSEERMSGEINLLEKQLFLWDVAYHQQGISLLPDNVYDQLQDKLHGWRSCHG---LP 82 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + N + K H + L+K+ + L ++ W Sbjct: 83 DKKNS-------TLIAGNGKSPHPVAHTGLKKLKDETALIDWMAGRKNLW---------- 125 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 ++PKIDG +T+ Y+ G RG+G G+D + I IP+ ++ P ++ ++ Sbjct: 126 -VQPKIDGVAVTLVYQAGNLTQILSRGNGLKGQDWTDKAPFISAIPQYIAAAPP-LLTLQ 183 Query: 189 GEVYISKNDFLALND 203 GE+++ Sbjct: 184 GELFLQMEGHQQAQS 198 >gi|327250774|gb|EGE62476.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli STEC_7v] Length = 469 Score = 106 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 89/511 (17%), Positives = 167/511 (32%), Gaps = 71/511 (13%) Query: 115 YRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 + ++PK+DG +T+ Y GK A RG+G GED + + IP++P Sbjct: 15 KNALRLWMREHNDLWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLIPSVP 74 Query: 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR 234 + +S + ++GE+++ + + N R+ +G+L R +D Sbjct: 75 QTVSGPLVN-STLQGEIFLKREG--------HIQQQMGGINARSKVAGLLMRQGNSDTLN 125 Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 L FV +++ + Q R N + NE ++ Sbjct: 126 SLGVFVWAWPDGTQLMT---DRLQQLTTAGFTLTQTYTRAVNNADEVERIRNEW--WKAK 180 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 LP+ DG+V + + + W+++ K+ + I +G++G ++ Sbjct: 181 LPFVTDGVVVRAAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISV 238 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VA L PV + + + DI GD++LV AG+ IP++ Sbjct: 239 VASLVPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID 287 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLK 473 + R + C C Q + RL Sbjct: 288 --------------------NVVWRGTERTKPTPPENRFNSLTCYFASDVCQEQFISRLV 327 Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533 S+ ++G+G+ ++ L Q +T G Sbjct: 328 WLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKS 377 Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593 L+ N R R++ ++GI A A S+ Sbjct: 378 KSAQLWHQFNLARKQPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF------ 428 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 W L P G A+ ++E+ +N + Sbjct: 429 -WQQL---PGTGSGRARQVIEWKENAQIKKL 455 >gi|307152927|ref|YP_003888311.1| BRCT domain-containing protein [Cyanothece sp. PCC 7822] gi|306983155|gb|ADN15036.1| BRCT domain protein [Cyanothece sp. PCC 7822] Length = 753 Score = 106 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQRH 664 A+ + + N E L + V+ E ++ ++ KK V GTL K+ R Sbjct: 633 AETVTDSKTEEENKSEPEKLAQPVAEDTQEIEDKKATPPQNLLKGKKFVIVGTLSKLNRD 692 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 + + + + G +++ S KTD I+VG PG+K +KAQ+ ++E QF+ LL+ + Sbjct: 693 QVKSIIQEAGGQLTSSPSSKTDYILVGKAPGTKAKKAQKNRAATLSELQFIELLKNSGIS 752 Query: 725 L 725 + Sbjct: 753 I 753 >gi|289614472|emb|CBI58756.1| unnamed protein product [Sordaria macrospora] Length = 1075 Score = 106 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + K VFTG L+ I R AQ V + G V+ S KTD +++GD+ G SKL K ++ G Sbjct: 335 LAGKTFVFTGLLKTIAREDAQALVKRYGGKVTGAPSSKTDFVVLGDDAGPSKLRKIKEHG 394 Query: 706 VKIMNEEQFLFLL 718 +K ++EE +L+ Sbjct: 395 IKTIDEEGLFYLI 407 >gi|22326948|ref|NP_680188.1| AtRFC1 (replication factor C 1); ATP binding / DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] gi|13374860|emb|CAC34494.1| replication factor C large subunit-like protein [Arabidopsis thaliana] gi|48958527|gb|AAT47816.1| At5g22010 [Arabidopsis thaliana] gi|332005585|gb|AED92968.1| replication factor C1 [Arabidopsis thaliana] Length = 956 Score = 106 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 3/88 (3%) Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 P G E + + V +GTL ++R +A++ + + G ++ +S+KT ++ Sbjct: 192 PHKGEKEVPEGTPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGSVSKKTTYLLCD 251 Query: 692 DN-PGSKLEKAQQLGVKIMNEEQFLFLL 718 ++ G K EKA++LG K + E+ ++ Sbjct: 252 EDIGGRKSEKAKELGTKFLTEDGLFDII 279 >gi|224054238|ref|XP_002298160.1| predicted protein [Populus trichocarpa] gi|222845418|gb|EEE82965.1| predicted protein [Populus trichocarpa] Length = 550 Score = 106 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 4/101 (3%) Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 P G E + + V +GTL ++R +A++ + + G V+ +S+KT ++ Sbjct: 189 PHKGEKEVPEGAPNCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTSYLLCD 248 Query: 692 DNP-GSKLEKAQQLGVKIMNEEQ-FLFLLQQYNTTLRIHDD 730 ++ G K KA++LG + E+ F +L N+ +D Sbjct: 249 EDIEGRKSSKAKELGTPFLTEDGLFDKILSSKNSKAPARED 289 >gi|310794495|gb|EFQ29956.1| replication factor RFC1 C terminal domain-containing protein [Glomerella graminicola M1.001] Length = 1026 Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG LQ + R + Q V + G V+ S KT +++GD+ G SKL+K + + Sbjct: 307 LSGLTFVFTGVLQTLGREEGQALVKKYGGKVTGAPSSKTSYVVLGDDAGPSKLKKIRDMN 366 Query: 706 VKIMNEEQFLFLLQQ 720 +K +NEE L+++ Sbjct: 367 IKTINEEGLFELIRR 381 >gi|328770979|gb|EGF81020.1| hypothetical protein BATDEDRAFT_653 [Batrachochytrium dendrobatidis JAM81] Length = 696 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG + R A + V + G V S KT ++VG++PG SKL+K + L Sbjct: 21 LTGLAFVFTGEMPSFSREDATDLVKRYGGRVVGAPSSKTSYVVVGEDPGESKLKKVRDLK 80 Query: 706 VKIMNEEQFLFLL 718 +K+++E+ F+ L+ Sbjct: 81 LKVLDEDSFVNLI 93 >gi|195343531|ref|XP_002038351.1| GM10782 [Drosophila sechellia] gi|194133372|gb|EDW54888.1| GM10782 [Drosophila sechellia] Length = 980 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 48/96 (50%), Gaps = 3/96 (3%) Query: 635 SIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + G E S + V TG L+ ++R +A+ + + G V ++ +K ++VG+ Sbjct: 223 NPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGE 282 Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRI 727 G KL A +L + I++E+ L+++ + ++ Sbjct: 283 EAGPKKLAMADELNIPILSEDGLFDLIREKSGNAKL 318 >gi|225435884|ref|XP_002265891.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 921 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-P 694 + S + V +GTL ++R +A++ + + G V+ +S+KT+ ++ ++ Sbjct: 160 EKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNFLLCDEDIG 219 Query: 695 GSKLEKAQQLGVKIMNEEQFLFLL 718 G+K KA++LG + E+ ++ Sbjct: 220 GNKSAKAKELGTAFLTEDGLFDMI 243 >gi|296083902|emb|CBI24290.3| unnamed protein product [Vitis vinifera] Length = 941 Score = 105 bits (261), Expect = 4e-20, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-P 694 + S + V +GTL ++R +A++ + + G V+ +S+KT+ ++ ++ Sbjct: 172 EKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNFLLCDEDIG 231 Query: 695 GSKLEKAQQLGVKIMNEEQFLFLL 718 G+K KA++LG + E+ ++ Sbjct: 232 GNKSAKAKELGTAFLTEDGLFDMI 255 >gi|198414852|ref|XP_002119468.1| PREDICTED: similar to ISRE-binding protein, partial [Ciona intestinalis] Length = 568 Score = 104 bits (260), Expect = 5e-20, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 +P K + +E V TG + R + + V + G V + +S +T +I G Sbjct: 269 NPGSKEIPKGEKNCMEGLSFVITGVQDSLSREEIKSLVERYGGKVVSAVSGRTSYLITGT 328 Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G SKL KA+Q KI+ E++FL L+ Sbjct: 329 DAGESKLNKAKQHKTKIIEEDEFLDLI 355 >gi|194898632|ref|XP_001978873.1| GG12593 [Drosophila erecta] gi|190650576|gb|EDV47831.1| GG12593 [Drosophila erecta] Length = 981 Score = 104 bits (259), Expect = 6e-20, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 3/91 (3%) Query: 635 SIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + G E S + V TG L+ ++R +A+ + + G V ++ +K ++VG+ Sbjct: 222 NPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGRVMTVVGKKLKYLVVGE 281 Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722 G KL A++L + I++E+ L+++ + Sbjct: 282 EAGPKKLAVAEELNIPILSEDGLFDLIREKS 312 >gi|330921995|ref|XP_003299650.1| hypothetical protein PTT_10692 [Pyrenophora teres f. teres 0-1] gi|311326573|gb|EFQ92247.1| hypothetical protein PTT_10692 [Pyrenophora teres f. teres 0-1] Length = 1085 Score = 104 bits (259), Expect = 6e-20, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG LQK R ++QE V + G V+ S+KT +++G + G SKL K + + Sbjct: 355 LAGLTFVFTGVLQKWGRTESQELVKRHGGKVTTAPSKKTSYVVLGSDAGYSKLAKIRDMN 414 Query: 706 VKIMNEEQFLFLLQQYNTTLRIHD 729 +K ++E+ L+++ D Sbjct: 415 IKTIDEDGLTQLIEKLTAAGNKGD 438 >gi|195568307|ref|XP_002102159.1| GD19753 [Drosophila simulans] gi|194198086|gb|EDX11662.1| GD19753 [Drosophila simulans] Length = 980 Score = 104 bits (259), Expect = 6e-20, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 3/91 (3%) Query: 635 SIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + G E S + V TG L+ ++R +A+ + + G V ++ +K ++VG+ Sbjct: 223 NPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGE 282 Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722 G KL A +L + I++E+ L+++ + Sbjct: 283 EAGPKKLAMADELNIPILSEDGLFDLIREKS 313 >gi|71018701|ref|XP_759581.1| hypothetical protein UM03434.1 [Ustilago maydis 521] gi|46099339|gb|EAK84572.1| hypothetical protein UM03434.1 [Ustilago maydis 521] Length = 950 Score = 104 bits (258), Expect = 8e-20, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 3/101 (2%) Query: 621 NICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 N + A + G + LVFTG L+ I R +A + + GA ++ Sbjct: 237 NWREMAARRAAGPANPGSKAIPQGKPNCLTGLTLVFTGELESISRDEASDLAKRYGARIT 296 Query: 679 AILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + S KT +IVG+ G KL+ ++ +K +NE++FL L+ Sbjct: 297 SAPSSKTSYVIVGEGAGPKKLDLIRKNNIKTLNEDEFLDLI 337 >gi|328790808|ref|XP_397246.4| PREDICTED: replication factor C subunit 1 [Apis mellifera] Length = 1009 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 3/104 (2%) Query: 628 LLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L + + + G + V +E + V TG L ++R +A+E V Q G + +++KT Sbjct: 263 LQRGGARNPGSKKIPVGAEYCLAGLSFVITGVLDSLEREEAEELVKQYGGRILHQVTKKT 322 Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIH 728 D IIVGD G SKL KA L +K ++E+ L L+Q+ + + +I Sbjct: 323 DYIIVGDQAGPSKLSKADSLNIKKISEDDLLDLIQEESPSKKIK 366 >gi|312213054|emb|CBX93136.1| similar to chromosome transmission fidelity factor [Leptosphaeria maculans] Length = 1098 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG LQ+ R +AQE V + G V+ S+KT+ +++G + G SKL+K + + Sbjct: 362 LAGLNFVFTGVLQRWGRTEAQELVKRHGGKVTGAPSKKTNYVVLGSDAGPSKLQKIKDMD 421 Query: 706 VKIMNEEQFLFLLQQYNTTLRIHD 729 +K ++E+ L+++ D Sbjct: 422 IKTIDEDGLTLLIEKLTEAGNKGD 445 >gi|158302275|ref|XP_321857.4| AGAP001290-PA [Anopheles gambiae str. PEST] gi|157012871|gb|EAA01207.5| AGAP001290-PA [Anopheles gambiae str. PEST] Length = 1016 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 +P + + ++ + V TG L+ ++R + + + LG V +S+K ++VGD Sbjct: 227 NPGSKEIPEGKPNCLQGLQFVITGVLESMERDECAQVIKDLGGKVVGAVSKKCTHMVVGD 286 Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G K+ +A++LG+ ++E++ L L+ Sbjct: 287 DAGPKKIAQAEELGIVTLSEDELLDLI 313 >gi|195497183|ref|XP_002095995.1| GE25440 [Drosophila yakuba] gi|194182096|gb|EDW95707.1| GE25440 [Drosophila yakuba] Length = 986 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++P K + + V TG L+ ++R +A+ + + G V ++ +K +++G Sbjct: 221 LNPGSKEIPKGSTDCLSGLTFVVTGVLESMEREEAESVIKEYGGRVMTVVGKKLKYLVIG 280 Query: 692 DNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + G KL A++L + I++E+ L+++ + Sbjct: 281 EEAGPKKLAVAEELNIPILSEDGLFDLIREKS 312 >gi|218441295|ref|YP_002379624.1| BRCT domain protein [Cyanothece sp. PCC 7424] gi|218174023|gb|ACK72756.1| BRCT domain protein [Cyanothece sp. PCC 7424] Length = 783 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 50/93 (53%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + + I+ KK V G++ K+ R + + + + G V + KTD I+VG Sbjct: 691 DIAEPEKDTKSDHPIQGKKFVILGSIAKLSREQIKSIIQEAGGQVINTPNSKTDYIVVGK 750 Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 PGSKL+KAQ++ ++E QF+ LL++ ++ Sbjct: 751 APGSKLKKAQKIKATNLSEAQFINLLKENGISI 783 >gi|167520484|ref|XP_001744581.1| hypothetical protein [Monosiga brevicollis MX1] gi|163776912|gb|EDQ90530.1| predicted protein [Monosiga brevicollis MX1] Length = 554 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVK 707 K V TG L+ ++R QE V G V+ +S++ D ++ GD PG SK+ KA+ L +K Sbjct: 8 GLKFVITGVLESLEREDVQELVKDHGGVIQKSVSKRVDYVVAGDEPGPSKMSKARDLKLK 67 Query: 708 IMNEEQFLFLL 718 +++E+ L+ Sbjct: 68 VLDEDGLFELI 78 >gi|313247250|emb|CBY15541.1| unnamed protein product [Oikopleura dioica] Length = 432 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 +P + +E V TG + + R + + + + G + +S KT +IVG+ Sbjct: 181 NPGSKEIPNGADNCLEGLTFVATGNGESLGRDEMKSLIQRYGGKFTTSVSGKTSYVIVGE 240 Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLL 718 PG SK++KA++ VK+++E+ L L+ Sbjct: 241 EPGESKIKKAKEKAVKLVDEDFILELI 267 >gi|195452278|ref|XP_002073285.1| GK14054 [Drosophila willistoni] gi|194169370|gb|EDW84271.1| GK14054 [Drosophila willistoni] Length = 983 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 ++ V TG L+ ++R +A+ + + G V ++ +K ++VG++ G KL A++L Sbjct: 218 LKGLTFVVTGVLESMEREEAESVIKEYGGRVMTVVGKKLKYLVVGEDAGPKKLAVAEELN 277 Query: 706 VKIMNEEQFLFLLQQYNTTLRIHDDD 731 + I++E+ L+++ + + ++ Sbjct: 278 IPILSEDGLFDLIRELSGQSKGPQEN 303 >gi|198453986|ref|XP_001359419.2| GA10826 [Drosophila pseudoobscura pseudoobscura] gi|198132600|gb|EAL28565.2| GA10826 [Drosophila pseudoobscura pseudoobscura] Length = 988 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++P K ++ V TG L+ ++R +A+ + + G V ++ +K ++VG Sbjct: 232 LNPGSKEIPKGTPDCLKGLTFVVTGVLESMEREEAESVIKEYGGRVMTVVGKKLMYLVVG 291 Query: 692 DNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + G KL A++L V I++E+ L+++ + Sbjct: 292 EEAGPKKLATAEELNVTILSEDGLFDLIREKS 323 >gi|195152678|ref|XP_002017263.1| GL21622 [Drosophila persimilis] gi|194112320|gb|EDW34363.1| GL21622 [Drosophila persimilis] Length = 979 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++P K ++ V TG L+ ++R +A+ + + G V ++ +K ++VG Sbjct: 232 LNPGSKEIPKGTPDCLKGLTFVVTGVLESMEREEAESVIKEYGGRVMTVVGKKLMYLVVG 291 Query: 692 DNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + G KL A++L V I++E+ L+++ + Sbjct: 292 EEAGPKKLATAEELNVTILSEDGLFDLIREKS 323 >gi|116205063|ref|XP_001228342.1| hypothetical protein CHGG_10415 [Chaetomium globosum CBS 148.51] gi|88176543|gb|EAQ84011.1| hypothetical protein CHGG_10415 [Chaetomium globosum CBS 148.51] Length = 1060 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + K VFTG L+ I R + Q V + G V+ S KTD +++GD+ G SKL K ++ G Sbjct: 314 LVGKSFVFTGLLKTISREEGQALVKRYGGKVTGAPSSKTDFVVLGDDAGPSKLRKIKEHG 373 Query: 706 VKIMNEEQFLFLLQ 719 +K ++EE +L++ Sbjct: 374 IKTIDEEGLFYLIK 387 >gi|323193166|gb|EFZ78384.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] Length = 180 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 21/166 (12%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E++ L+Q+++ +D Y++ + DS YD L R S P Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P H + + K+ + + + +++ ++PK Sbjct: 86 P-------PLNGTT--RHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179 +DG +T+ Y+ GK A RG+G GED + IR IP+IP+ Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQG 171 >gi|291298903|ref|YP_003510181.1| BRCT domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290568123|gb|ADD41088.1| BRCT domain protein [Stackebrandtia nassauensis DSM 44728] Length = 1024 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 45/79 (56%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 EIE K +V TG+ + R +A + +++LGA+V +S KTD++ GD G K +KA LG Sbjct: 20 EIEGKTIVLTGSFLAMPRSEAGQRLSELGAIVKGTVSSKTDLVFAGDKAGGKADKALALG 79 Query: 706 VKIMNEEQFLFLLQQYNTT 724 V + E + +L T Sbjct: 80 VPVHGEAALMAVLSGEAAT 98 >gi|260951239|ref|XP_002619916.1| hypothetical protein CLUG_01075 [Clavispora lusitaniae ATCC 42720] gi|238847488|gb|EEQ36952.1| hypothetical protein CLUG_01075 [Clavispora lusitaniae ATCC 42720] Length = 876 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 7/99 (7%) Query: 629 LKEVSPSIGRHEKNVSSEIE------NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 LK ++ NV I +VFTG L + R A+ Q GA V+ +S Sbjct: 120 LKNKQQNVAAPSGNVELPIAAPNCLGGLTIVFTGVLPNLDRDAAESIAKQYGARVTKSIS 179 Query: 683 RKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 +KT ++++G+ G SK++K + +K ++E+ F+ LL++ Sbjct: 180 KKTSLVVIGEEAGPSKVKKIKDFKIKAISEDGFIELLRR 218 >gi|9964513|ref|NP_064981.1| putative NAD+ dependent DNA ligase [Amsacta moorei entomopoxvirus 'L'] gi|9944722|gb|AAG02905.1|AF250284_199 AMV199 [Amsacta moorei entomopoxvirus 'L'] Length = 532 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 74/396 (18%), Positives = 126/396 (31%), Gaps = 60/396 (15%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + LE I D+ YY +I D +YD ++ I + +P+ KIG Sbjct: 25 YNDLENIIQTLDNSYYDKEA-LISDKKYDLIRN---FINNKYPN-------ESLCKKIGY 73 Query: 81 EMNLSLFKVTHSIPTLSLEKIW-NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 KV S K + + L +I + ++ L K DG + Sbjct: 74 TPED---KVRLKYFMGSENKTYKSDNKLLSWIN---------EYHTNILVLSAKADGISV 121 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 + K RGDG G+D++ I + + F Sbjct: 122 LWDIKNNK---IYSRGDGKYGKDITHFINYFNFSDDKN--------------INNNDIFK 164 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259 + + RN +G + N +I + ++ + Q E Sbjct: 165 NNINFVRGELVIDKPENRNIVAGQI---NRNEIDKETALKIYFVAYEILEPRMTQLEQFH 221 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 K+ + + L Y IDG++ + + + + G Sbjct: 222 KLTENSIRTVKYDSV-DYNISYEQLSEIYNNYTQELSYYIDGIIIRNNNLNPVIKSGN-- 278 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 P W I K +K T + +I I + I P A LEP+ I + I HN Y+ Sbjct: 279 --PPWSICFKETDKIYITTVKEIKWDISKKNIYIPKAILEPIIIDNSTINAVACHNAKYV 336 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 + I G V + + G VIP + + Sbjct: 337 -----------IDKKINTGSIVEIVKKGGVIPIINN 361 >gi|50292909|ref|XP_448887.1| hypothetical protein [Candida glabrata CBS 138] gi|49528200|emb|CAG61857.1| unnamed protein product [Candida glabrata] Length = 854 Score = 102 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694 + + + +VFTGTL I+R A+ + GA V+ +S+KT ++++GD Sbjct: 140 MDVDIPEGQDNCLLGLTIVFTGTLPSIERGAAENLAKRYGARVTKSISKKTSVVVLGDEA 199 Query: 695 G-SKLEKAQQLGVKIMNEEQFLFLLQ 719 G KLEK + LG+K ++EE F L+ Sbjct: 200 GPKKLEKIKDLGIKAIDEEGFKQLIA 225 >gi|300856782|ref|YP_003781766.1| putative exonuclease with a BRCT domain [Clostridium ljungdahlii DSM 13528] gi|300436897|gb|ADK16664.1| putative exonuclease with a BRCT domain [Clostridium ljungdahlii DSM 13528] Length = 436 Score = 102 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 19/138 (13%) Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 IA F N N + + + + S+ NK +VFTG L+ + R +A Sbjct: 198 IANTKNSFTNNKFNTVKISEIK-----PDNDNIIDTSNPFYNKNVVFTGELKSLGRKEAM 252 Query: 668 EYVTQLGAVVSAILSRKTDIIIVG--DNP-------GSKLEKAQQLG-----VKIMNEEQ 713 + V LG + + +S+KTD +IVG D SK EKA +L +KI+NE + Sbjct: 253 QKVVNLGGTLKSGVSKKTDYLIVGNQDKSLVGENGISSKEEKAAELNENGSSIKILNESE 312 Query: 714 FLFLLQQYNTTLRIHDDD 731 FL L++ N D + Sbjct: 313 FLELIKTPNKENSFDDSN 330 >gi|50547051|ref|XP_500995.1| YALI0B16918p [Yarrowia lipolytica] gi|49646861|emb|CAG83248.1| YALI0B16918p [Yarrowia lipolytica] Length = 952 Score = 102 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 1/82 (1%) Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-S 696 + + + VFTGT+ + R + Q V + G V++ +S KT+ +++G++ G Sbjct: 246 ELPEAAENCLVGLTFVFTGTMPNLSREEGQAAVKKYGGKVTSSISGKTNCVVLGEDAGPK 305 Query: 697 KLEKAQQLGVKIMNEEQFLFLL 718 K+E+ ++L K ++E FL LL Sbjct: 306 KIEQIKKLRTKALDEAGFLELL 327 >gi|46105398|ref|XP_380503.1| hypothetical protein FG00327.1 [Gibberella zeae PH-1] Length = 1049 Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG LQ I R Q V + G V S KT +++GD+ G SKL K Q L Sbjct: 322 LSGLSFVFTGVLQTISRDDGQALVKRYGGKVVGQPSSKTSFVVLGDDAGPSKLAKIQSLS 381 Query: 706 VKIMNEEQFLFLLQQ 720 +K ++E L+++ Sbjct: 382 IKTIDENGLFDLIRK 396 >gi|171689552|ref|XP_001909716.1| hypothetical protein [Podospora anserina S mat+] gi|170944738|emb|CAP70849.1| unnamed protein product [Podospora anserina S mat+] Length = 912 Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + K VFTG L+ I R Q V + G V+ S KTD +++GD+ G SKL K ++ Sbjct: 266 LVGKTFVFTGLLKTISREDGQALVKRYGGKVTGAPSSKTDFVVLGDDAGPSKLRKIKEHN 325 Query: 706 VKIMNEEQFLFLLQ 719 +K ++EE +L++ Sbjct: 326 IKTIDEEGLFYLIK 339 >gi|158336878|ref|YP_001518053.1| hypothetical protein AM1_3746 [Acaryochloris marina MBIC11017] gi|158307119|gb|ABW28736.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 1187 Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 65/172 (37%), Gaps = 23/172 (13%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 + + + + + + + A +A+ +V ++ Sbjct: 1021 LPEQMMAAMKEADQQITTLETQVKAMKKDKAELEKAM-----------KMARDVVSHFEQ 1069 Query: 619 P-RNICAVEALLKE-----------VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 N+ + L++ + E + + V TG L ++ + Sbjct: 1070 QVENLTQEKQQLEQQFQMSTSDDPLATVPAVVPESQPGLPLSGQSFVITGKLAQLSYEQV 1129 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + + G ++ S KT ++VG +PG+KL+KA++ + ++E+Q + LL Sbjct: 1130 KTIIQEAGGTINTHPSSKTSYVVVGKDPGNKLKKAEKYSIPQLSEQQLMELL 1181 >gi|156065801|ref|XP_001598822.1| hypothetical protein SS1G_00911 [Sclerotinia sclerotiorum 1980] gi|154691770|gb|EDN91508.1| hypothetical protein SS1G_00911 [Sclerotinia sclerotiorum 1980 UF-70] Length = 1047 Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 + + + VFTG L I R + E V + G ++ S KT+ +++G + G Sbjct: 297 AEIPEGAENCLAGLTFVFTGVLNTISRDEGIELVKKYGGKITGAPSSKTNYVVLGSDAGP 356 Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719 SKL K ++L +K ++EE +++ Sbjct: 357 SKLRKIRELKIKSVDEEGLFAIIK 380 >gi|205364119|gb|ACI04517.1| replication factor C large subunit [Hydra magnipapillata] Length = 1116 Score = 101 bits (251), Expect = 4e-19, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + + V TG L+ R + + + + G V+ +S KT IIVG +PG Sbjct: 350 KELPKGSDNCLAGLSFVITGVLEAFDRDEIADSIKRYGGKVTTSVSGKTSYIIVGRDPGE 409 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 +K+EKA + K ++E+ F+ L+ Sbjct: 410 TKIEKALKHKTKQIDEDGFIDLI 432 >gi|196009297|ref|XP_002114514.1| hypothetical protein TRIADDRAFT_27705 [Trichoplax adhaerens] gi|190583533|gb|EDV23604.1| hypothetical protein TRIADDRAFT_27705 [Trichoplax adhaerens] Length = 716 Score = 101 bits (251), Expect = 4e-19, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 3/75 (4%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAV--VSAILSRKTDIIIVGDNPG-SKLEKAQQ 703 + V TG L I+R A E + LG VS +S+KT+ ++VG +PG +KLEKA+ Sbjct: 6 LSGLVFVITGVLDTIERETAIELIQSLGGKVNVSGSISKKTNYLVVGRDPGLTKLEKAKN 65 Query: 704 LGVKIMNEEQFLFLL 718 K ++E F L+ Sbjct: 66 FSTKQLDENSFYDLI 80 >gi|331246527|ref|XP_003335896.1| replication factor C subunit 1 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309314886|gb|EFP91477.1| replication factor C subunit 1 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1470 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 P + + + VFTG L+ + R AQ + G V+ S KT +++G + Sbjct: 50 PGSKPIPEGAENCLAGLTFVFTGELESLSREDAQTLAKRYGGRVTTSPSSKTSFVVLGSD 109 Query: 694 PG-SKLEKAQQLGVKIMNEEQFLFLL 718 G KLE ++ +K + E++FL L+ Sbjct: 110 AGPKKLEMIKKHKIKTITEDEFLNLI 135 >gi|33322704|gb|AAQ07086.1|AF496399_1 DNA ligase [Lactobacillus delbrueckii subsp. lactis] Length = 116 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 12/123 (9%) Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E +F LGI +VG + A+ +A+ + + A L + +G IA+ Sbjct: 4 ELVLFGLGIDNVGRKAAQLIAQKFKNMSKIASA----------SVQELTAIDTIGMTIAE 53 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ ++Q + L + G + + + K +V TG L R + + Sbjct: 54 SLTAYFQQEEAKKLLTRLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAEFTK 113 Query: 669 YVT 671 + Sbjct: 114 KLQ 116 >gi|302923420|ref|XP_003053672.1| hypothetical protein NECHADRAFT_30719 [Nectria haematococca mpVI 77-13-4] gi|256734613|gb|EEU47959.1| hypothetical protein NECHADRAFT_30719 [Nectria haematococca mpVI 77-13-4] Length = 1042 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG LQ I R + Q V + G V S KT +++GD+ G SKL K + G Sbjct: 315 LSGLSFVFTGVLQTIGRDEGQALVKRYGGKVVGQPSSKTSFVVLGDDAGPSKLAKIKSHG 374 Query: 706 VKIMNEEQFLFLLQQ 720 +K ++E L+++ Sbjct: 375 IKTIDENGLFDLIRK 389 >gi|213421985|ref|ZP_03355051.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 186 Score = 101 bits (250), Expect = 6e-19, Method: Composition-based stats. Identities = 84/206 (40%), Positives = 127/206 (61%), Gaps = 21/206 (10%) Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++NATLHN D I+ Sbjct: 1 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 60 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 L +R+GD+V+++RAG+VIP+VV+++++ER + +P FP+ CP+C S V Sbjct: 61 L-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDV 109 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 R A RCTGGL C AQ+ E LKHFVSR A +++G+G + +D + E Sbjct: 110 ERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVERE--- 160 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENI 527 + PAD+F L + T ++ Sbjct: 161 -YVHTPADLFRLTAGKLTGLDRMGPK 185 >gi|241111852|ref|XP_002399407.1| replication factor C large subunit, putative [Ixodes scapularis] gi|215492969|gb|EEC02610.1| replication factor C large subunit, putative [Ixodes scapularis] Length = 706 Score = 101 bits (250), Expect = 6e-19, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 ++ LV TG L+ I+R + + + GA V+ +SR T ++ G + G +KL KA++ Sbjct: 6 LKGVTLVITGVLECIERDDTRALLERCGAKVTQSVSRNTTYLVAGRDSGPAKLRKAEECK 65 Query: 706 VKIMNEEQFLFLLQ 719 VKI++E+ F L++ Sbjct: 66 VKILDEDGFFELIE 79 >gi|189200012|ref|XP_001936343.1| replication factor C subunit 1 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187983442|gb|EDU48930.1| replication factor C subunit 1 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 1096 Score = 101 bits (250), Expect = 7e-19, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG LQK R ++QE V + G V+ S+KT +++G + G SKL K + + Sbjct: 353 LAGLNFVFTGVLQKWGRTESQELVKRHGGKVTTAPSKKTSYVVLGSDAGPSKLAKIRDMN 412 Query: 706 VKIMNEEQFLFLLQQYNTTLRIHD 729 +K ++E+ L+++ D Sbjct: 413 IKTIDEDGLTQLIEKLTAAGNKGD 436 >gi|303283302|ref|XP_003060942.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457293|gb|EEH54592.1| predicted protein [Micromonas pusilla CCMP1545] Length = 949 Score = 101 bits (250), Expect = 7e-19, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 4/88 (4%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 +E V +G L ++R +A++++ + G V++ +S KT ++VG + G SK KA+ +G Sbjct: 224 LEGCTFVVSGVLDSLERDEAEDFIKRHGGKVTSAVSGKTTYLLVGMDCGKSKYAKAKSVG 283 Query: 706 VKIMNEEQFLFL---LQQYNTTLRIHDD 730 +M+E+ + L + + + Sbjct: 284 TPLMDEDGLFAMVEALAEEAAKNPVKTE 311 >gi|221101530|ref|XP_002169845.1| PREDICTED: similar to replication factor C large subunit, partial [Hydra magnipapillata] Length = 932 Score = 101 bits (250), Expect = 7e-19, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 K + + V TG L+ R + + + + G V+ +S KT IIVG +PG Sbjct: 351 KELPKGSDNCLAGLSFVITGVLEAFDRDEIADSIKRYGGKVTTSVSGKTSYIIVGRDPGE 410 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 +K+EKA + K ++E+ F+ L+ Sbjct: 411 TKIEKALKHKTKQIDEDGFIDLI 433 >gi|319411789|emb|CBQ73832.1| related to replication factor C protein [Sporisorium reilianum] Length = 954 Score = 101 bits (250), Expect = 7e-19, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 3/101 (2%) Query: 621 NICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 N + A + G + + + LVFTG L I R +A + + GA ++ Sbjct: 243 NWREMAARRAAGPSNPGSKDIPQGAPNCLAGLTLVFTGELTSISRDEATDLAKRYGARIT 302 Query: 679 AILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 S KT +IVG+ G KLE ++ ++ ++E+ FL L+ Sbjct: 303 GAPSSKTSYVIVGEGAGPKKLESIKKNKIETLDEDAFLDLI 343 >gi|325118994|emb|CBZ54546.1| putative replication factor c subunit [Neospora caninum Liverpool] Length = 1128 Score = 100 bits (249), Expect = 7e-19, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 18/96 (18%) Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---DN-----P 694 S K VFTG L + R +A V G ++ +S KTD ++ G ++ Sbjct: 442 SKSSFAGKTFVFTGVLDSMGRDEAVAAVVGNGGRCTSAVSGKTDYLVAGSLLEDGRDVTT 501 Query: 695 GSKLEKAQQL----------GVKIMNEEQFLFLLQQ 720 GSK KA QL +KI++E++FL +L + Sbjct: 502 GSKYRKALQLMQDGSAKQKASLKILHEQEFLAMLPE 537 >gi|242216981|ref|XP_002474294.1| predicted protein [Postia placenta Mad-698-R] gi|220726586|gb|EED80531.1| predicted protein [Postia placenta Mad-698-R] Length = 731 Score = 100 bits (248), Expect = 9e-19, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG L + R +A E + G V+ S KT +++G + G SKL ++ Sbjct: 117 LAGLTFVFTGELSSLSRDEAIELAKRHGGRVTGQPSSKTSFVVLGSDAGPSKLAAIKKNN 176 Query: 706 VKIMNEEQFLFLLQ 719 + ++E+ FL L+ Sbjct: 177 LTTLDEDSFLQLIA 190 >gi|126660216|ref|ZP_01731333.1| DNA ligase [Cyanothece sp. CCY0110] gi|126618518|gb|EAZ89270.1| DNA ligase [Cyanothece sp. CCY0110] Length = 524 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 33/83 (39%), Positives = 48/83 (57%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + KKLV G+L + R A+ V Q G +++ S KTD ++VG NPG KL+KAQ+LG+ Sbjct: 442 FDGKKLVVVGSLDSMNRETAKSLVQQAGGTLTSSPSSKTDYVVVGKNPGDKLKKAQKLGI 501 Query: 707 KIMNEEQFLFLLQQYNTTLRIHD 729 ++E QFL L T + Sbjct: 502 SQLSENQFLEALATVGITETNPE 524 >gi|312371248|gb|EFR19483.1| hypothetical protein AND_22348 [Anopheles darlingi] Length = 1111 Score = 99.9 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 +P + + +E + V TG L+ ++R + + + LG V +S+K ++VGD Sbjct: 267 NPGSKAIPEGKPNCLEGLQFVITGVLESMERDECAQVIKDLGGKVVGAVSKKVTHMVVGD 326 Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + G KL +A+ LG+ ++E+ L+++ + Sbjct: 327 DCGPKKLSQAEDLGIPTLSEDALFDLIREKS 357 >gi|322778907|gb|EFZ09323.1| hypothetical protein SINV_15414 [Solenopsis invicta] Length = 1027 Score = 99.9 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 628 LLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L + + + G E + + + TG L ++R++A++ + + +S K Sbjct: 294 LQRGGARNPGSKEIPTGATNCLAGISFLITGVLDSLERNEAEDLIRKYSGRTVNTVSSKV 353 Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + +IVGD G +KL KA LG+K ++E+ L ++ Sbjct: 354 NYVIVGDEAGPAKLTKANSLGIKQISEDDLLEMI 387 >gi|194746572|ref|XP_001955754.1| GF18917 [Drosophila ananassae] gi|190628791|gb|EDV44315.1| GF18917 [Drosophila ananassae] Length = 982 Score = 99.9 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++P K + + + TG L+ ++R +A+ + + G V ++ +K ++VG Sbjct: 235 LNPGSKEIPKGTPNCLSGITFLVTGVLESMEREEAESVIKEYGGRVMTVVGKKLQYLVVG 294 Query: 692 DNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + G KL A++L + I++E+ L+++ + Sbjct: 295 EEAGPKKLAVAEELNIPILSEDGLFDLIREKS 326 >gi|156087871|ref|XP_001611342.1| hypothetical protein [Babesia bovis T2Bo] gi|154798596|gb|EDO07774.1| conserved hypothetical protein [Babesia bovis] Length = 944 Score = 99.9 bits (247), Expect = 2e-18, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%) Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 KEV+P + ++ + VFTG L I R E V LG + + +S KT+ ++ Sbjct: 299 KEVTPHGASNVNKE--KVVGMRFVFTGVLDAIDRDSVVELVRSLGGLTTGSVSSKTNYLV 356 Query: 690 VGDN--------PGSKLEKAQQL------GVKIMNEEQFLFLLQQYNTTLRI 727 G+ GSK +KA + G++++NE +FL L+ N + R+ Sbjct: 357 YGEKLEDGRHYTTGSKYKKALEFNKTKDAGIQLLNESEFLALIDYQNVSSRL 408 >gi|242209061|ref|XP_002470379.1| predicted protein [Postia placenta Mad-698-R] gi|220730549|gb|EED84404.1| predicted protein [Postia placenta Mad-698-R] Length = 697 Score = 99.5 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG L + R +A E + G V+ S KT +++G + G SKL ++ Sbjct: 15 LTGLTFVFTGELSSLSRDEAIELAKRHGGRVTGQPSSKTSFVVLGSDAGPSKLAAIKKNN 74 Query: 706 VKIMNEEQFLFLLQ 719 + ++E+ FL L+ Sbjct: 75 LTTLDEDSFLQLIA 88 >gi|330884612|gb|EGH18761.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea str. race 4] Length = 52 Score = 99.5 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698 + V TG+L+++ R A+E + LGA VS +S KT ++ G GSKL Sbjct: 1 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKL 49 >gi|150864993|ref|XP_001384033.2| hypothetical protein PICST_35815 [Scheffersomyces stipitis CBS 6054] gi|149386249|gb|ABN66004.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 764 Score = 99.5 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 1/81 (1%) Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKL 698 + + + +VFTG L ++ R ++ + GA V+ +S KT ++++GD G SK+ Sbjct: 45 PEAQPNCLSGLTIVFTGVLPRLDRDTSENLAKRYGAKVTKSISGKTSLVVIGDEAGPSKI 104 Query: 699 EKAQQLGVKIMNEEQFLFLLQ 719 +K + L +K +NE+ F+ LLQ Sbjct: 105 KKIKSLHIKAINEDGFIQLLQ 125 >gi|221052935|ref|XP_002257842.1| replication factor C subunit 1 [Plasmodium knowlesi strain H] gi|193807674|emb|CAQ38378.1| replication factor C subunit 1, putative [Plasmodium knowlesi strain H] Length = 900 Score = 99.5 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 14/99 (14%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSK 697 + K V TG + R + Q + + G V + +S KT +I G+ N G K Sbjct: 191 PFHSLKFVLTGVFKNFSRDELQSKIKEHGGNVMSAVSSKTHYLIHGEYLEDGRMYNEGKK 250 Query: 698 LEKAQQL------GVKIMNEEQFLFLLQQYNTTLRIHDD 730 +KA ++ +KI+NEE+FL +L + +D Sbjct: 251 YQKALEVQKMSKCNIKILNEEEFLQMLPEEKNKTSKWED 289 >gi|297520938|ref|ZP_06939324.1| NAD-dependent DNA ligase LigB [Escherichia coli OP50] Length = 312 Score = 99.5 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 62/331 (18%), Positives = 127/331 (38%), Gaps = 38/331 (11%) Query: 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148 V H + + K+ + L ++ W ++PK+DG +T+ Y GK Sbjct: 7 VMHPVAHTGVRKMVDKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKL 55 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208 A RG+G GED + + I +P+ +S ++GE+++ + Sbjct: 56 NKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREG--------HIQ 106 Query: 209 GRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268 + N R +G++ R + +D L FV ++ + E+ L Sbjct: 107 QQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLMSDRLKELATAGFTLTQTY 166 Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 V+ A+ + + + + + P+ DG+V + + + W+++ Sbjct: 167 TRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAKEPESRHW--LPGQAEWLVAW 219 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388 K+ + I +G++G ++ VA L PV + + + Sbjct: 220 KYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVR 268 Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 DI GD++LV AG+ IP++ D++ Sbjct: 269 RWQEWDIAPGDQILVSLAGQGIPRIDDVVWR 299 >gi|213972533|ref|NP_001135428.1| germ line transcription factor 1 [Nasonia vitripennis] Length = 1100 Score = 99.1 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 +P + + N + TG L ++R +A+E +T+ G + +S+K + II+G+ Sbjct: 321 NPGSKEIPEGAEQCLANLSFLITGVLDSLERGEAEELITKYGGRMLHSVSKKLNYIIIGE 380 Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G SKL KA+ L +K ++E+ L L+ Sbjct: 381 EAGPSKLAKAESLNIKKISEDGLLELI 407 >gi|256062935|ref|XP_002570360.1| DNA ligase NAD-dependent [Schistosoma mansoni] gi|227294819|emb|CAY18406.1| DNA ligase, NAD-dependent, putative [Schistosoma mansoni] Length = 311 Score = 98.7 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 102/267 (38%), Positives = 140/267 (52%), Gaps = 21/267 (7%) Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V KVD+ LQ+ LG AR+PRW +++KF ++ASTRL I+ Q+GRTG LTPVARL PV Sbjct: 1 MVVKVDDRRLQQDLGFVARAPRWAVAYKFPAQEASTRLEAIEWQVGRTGALTPVARLAPV 60 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 ++GG +++NATLHN D + L D+R GD V++ RAG+VIPKV+ + ++ Sbjct: 61 SVGGVVVSNATLHNIDEVHRL-----------DLRAGDTVVIYRAGDVIPKVMRRLDDDG 109 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 H P + P CP+C S VVR RC+ GL C AQ+ E L+HF SR A Sbjct: 110 HAARAPVALPDACPVCASAVVRPEGE------VVARCSAGLFCPAQRKEALRHFASRRAM 163 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +IEGLG++ +D A + PADI+ L Q ++ Sbjct: 164 DIEGLGEKWVDLMVD----AGLLHTPADIYRLSAEQLLQLPRMXXXXARLAHPTRGGPGR 219 Query: 542 INKRRNISLERFIFSLGIRHVGAEIAR 568 R S G GA AR Sbjct: 220 CRPSVCAGPARARRSAGSAAPGAGRAR 246 >gi|290991775|ref|XP_002678510.1| replication factor C large subunit [Naegleria gruberi] gi|284092123|gb|EFC45766.1| replication factor C large subunit [Naegleria gruberi] Length = 994 Score = 98.7 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 51/86 (59%), Gaps = 1/86 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 +++K V TG ++ + R + ++ + Q G V+ +S +T ++VGD PG SK++K ++ Sbjct: 279 LKDKSFVITGQMESLDRDEMEDLIKQYGGVIRGNVSGRTSFVVVGDGPGESKMKKVREHK 338 Query: 706 VKIMNEEQFLFLLQQYNTTLRIHDDD 731 K ++E+ L ++ + N + + D+ Sbjct: 339 TKQLSEDDLLEMIAKSNPSGKDSMDE 364 >gi|195396041|ref|XP_002056641.1| GJ11052 [Drosophila virilis] gi|194143350|gb|EDW59753.1| GJ11052 [Drosophila virilis] Length = 964 Score = 98.7 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++P K ++ + TG L+ ++R +A + G V ++ +K + ++VG Sbjct: 209 LNPGSKEIPKGAPDCLKGLTFLVTGILESMERDEAASVIKGFGGRVMTVVGKKLNYLVVG 268 Query: 692 DNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G KL +A++ V I++E+ L+++ Sbjct: 269 EEAGPKKLAQAEEHNVTIISEDGLFDLIRE 298 >gi|164658055|ref|XP_001730153.1| hypothetical protein MGL_2535 [Malassezia globosa CBS 7966] gi|159104048|gb|EDP42939.1| hypothetical protein MGL_2535 [Malassezia globosa CBS 7966] Length = 850 Score = 98.3 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 6/113 (5%) Query: 617 QNPRNICAVEAL---LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVT 671 +P N+ + + + G + + LVFTG L I R A + Sbjct: 124 DSPSNVPVWKQMAQRRAAGPVAPGSKAIPEGAPNCLAGLTLVFTGELSSISREDAIDLAK 183 Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 + GA V+ S KT +++GD G KLE Q+ +K ++E+ FL L+ + Sbjct: 184 RYGAKVTTAPSSKTSYVVLGDGAGAKKLETIQKNKLKTVDEDGFLALIAERGA 236 >gi|67467166|ref|XP_649703.1| Activator 1 140 kDa subunit [Entamoeba histolytica HM-1:IMSS] gi|56466194|gb|EAL44317.1| Activator 1 140 kDa subunit, putative [Entamoeba histolytica HM-1:IMSS] Length = 718 Score = 98.3 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQ 702 +E + K V TG ++ R + +EY+ G V+ +S KT ++I G+ G SK+EKA+ Sbjct: 130 ENEFQKKNFVLTGVYDELDRDEMKEYIISFGGNVATSISGKTAVLIAGEEAGPSKIEKAK 189 Query: 703 QLGVKIMNEEQFLFLLQQY 721 + G+ I +E+ ++Q Sbjct: 190 EKGIPIWSEDDVFNYVKQK 208 >gi|239995022|ref|ZP_04715546.1| NAD-dependent DNA ligase [Alteromonas macleodii ATCC 27126] Length = 70 Score = 98.3 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 3/70 (4%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S+EQA++++ +L ++ ++ YY P + D+ YD + A+ +P L + PN Sbjct: 4 SLEQAKQQIETLRNTLNEYNYQYYVMDDPSVPDAVYDRDMQALIALEKQYPTL---QSPN 60 Query: 73 GPLNKIGGEM 82 P K+GG Sbjct: 61 SPSQKVGGAA 70 >gi|241951560|ref|XP_002418502.1| replication factor C subunit, putative [Candida dubliniensis CD36] gi|223641841|emb|CAX43803.1| replication factor C subunit, putative [Candida dubliniensis CD36] Length = 886 Score = 97.9 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 8/108 (7%) Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 V F+ + A E + + + + + +VFTG + + R A++ Q Sbjct: 161 VNFFA-------LNAARNETTQTAVDLPEAQPNCLMGLTIVFTGQMPNLDRGTAEQTAKQ 213 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 GA V+ +S KT ++++G + G SK++K +QL +K ++E F+ LL+ Sbjct: 214 YGAKVTKSISGKTSLVVLGADAGPSKVQKIKQLKIKAIDEAGFIKLLE 261 >gi|295135414|ref|YP_003586090.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87] gi|294983429|gb|ADF53894.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87] Length = 282 Score = 97.9 bits (242), Expect = 6e-18, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQ 702 S + + V +G Q R + Q+ + Q G ++ +S T+ ++ G G SKL KA+ Sbjct: 204 SQLLSGLRFVISGNFQHFSRIEMQKIIVQNGGRITGSVSGLTNYLVCGSQAGNSKLSKAK 263 Query: 703 QLGVKIMNEEQFLFLL 718 G K+++E Q L +L Sbjct: 264 LNGTKLISENQLLEIL 279 >gi|254566547|ref|XP_002490384.1| Replication factor C subunit [Pichia pastoris GS115] gi|238030180|emb|CAY68103.1| Replication factor C subunit [Pichia pastoris GS115] gi|328350779|emb|CCA37179.1| Replication factor C subunit 1 [Pichia pastoris CBS 7435] Length = 908 Score = 97.2 bits (240), Expect = 9e-18, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + +VFTG + I R +A+E + GA V+ +S+KT ++++G G SK++K + Sbjct: 223 LIGLTMVFTGVMPTIDRTQAEELAKRYGAKVTKSVSKKTSVVVLGSEAGPSKVKKIKDFK 282 Query: 706 VKIMNEEQFLFLLQ 719 +K ++E+ F+ L++ Sbjct: 283 IKAIDEDGFITLIK 296 >gi|328863808|gb|EGG12907.1| hypothetical protein MELLADRAFT_46497 [Melampsora larici-populina 98AG31] Length = 937 Score = 97.2 bits (240), Expect = 9e-18, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 13/98 (13%) Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 + + G E + VFTG L + R +AQ + G V+ S KT Sbjct: 206 QRAGPSAPGSKEIPEGQPNCLAGLTFVFTGELDSLSREEAQTLCKRYGGRVTTSPSSKTT 265 Query: 687 IIIVGDNPGSKLEKAQQL------GVKIMNEEQFLFLL 718 +++G + G A++L + + E++FL L+ Sbjct: 266 YVVLGSDAG-----AKKLEVIAKHKITTLTEDEFLELI 298 >gi|212537239|ref|XP_002148775.1| DNA replication factor C subunit Rfc1, putative [Penicillium marneffei ATCC 18224] gi|210068517|gb|EEA22608.1| DNA replication factor C subunit Rfc1, putative [Penicillium marneffei ATCC 18224] Length = 1031 Score = 97.2 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 + + VFTG L + R + Q V + G V+ S KT +++G + G Sbjct: 294 AEIPVGAENCLAGLSFVFTGVLDSLGREEGQSLVKRYGGKVTGAPSSKTSYVVLGSDAGP 353 Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQ 720 SKL K +++ +K + EE L+++ Sbjct: 354 SKLRKIKEMNIKTIGEEGLFELIRR 378 >gi|195054401|ref|XP_001994113.1| GH23049 [Drosophila grimshawi] gi|193895983|gb|EDV94849.1| GH23049 [Drosophila grimshawi] Length = 1008 Score = 97.2 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++P K ++ + TG L+ ++R +A + + G + ++ +K + ++VG Sbjct: 213 LNPGSKEIPKGAPDCLKGLTFLVTGILESMERDEAASVIKEFGGRIMTVVGKKLNYLVVG 272 Query: 692 DNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G KL +A++ V I++E+ L+++ Sbjct: 273 EEAGPKKLAQAEEHNVSILSEDALFELIRE 302 >gi|255078488|ref|XP_002502824.1| predicted protein [Micromonas sp. RCC299] gi|226518090|gb|ACO64082.1| predicted protein [Micromonas sp. RCC299] Length = 917 Score = 96.8 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 +E +V +G L ++R +A++YV + G V++ +S KT ++VG + G SK KA+Q G Sbjct: 207 LEGVTVVVSGVLDSLEREEAEDYVKRHGGKVTSTVSGKTTYLLVGMDCGKSKYNKAKQHG 266 Query: 706 VKIMNEEQFLFLLQ 719 +++E+ ++ Sbjct: 267 TTLIDEDGLFAMVA 280 >gi|242809846|ref|XP_002485458.1| DNA replication factor C subunit Rfc1, putative [Talaromyces stipitatus ATCC 10500] gi|218716083|gb|EED15505.1| DNA replication factor C subunit Rfc1, putative [Talaromyces stipitatus ATCC 10500] Length = 1028 Score = 96.8 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG L + R + Q V + G V+ S KT +++G + G SKL K +++ Sbjct: 304 LAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTGAPSSKTSYVVLGSDAGPSKLRKIKEMN 363 Query: 706 VKIMNEEQFLFLLQQ 720 +K + EE L+++ Sbjct: 364 IKTIGEEGLFELIRR 378 >gi|170724912|ref|YP_001758938.1| BRCT domain-containing protein [Shewanella woodyi ATCC 51908] gi|169810259|gb|ACA84843.1| BRCT domain protein [Shewanella woodyi ATCC 51908] Length = 209 Score = 96.8 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 2/73 (2%) Query: 646 EIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQ 703 E E++ +V TG + R + E + LGA + + +S+KT +++ G G SKLEKA+ Sbjct: 132 EWEDQNIVLTGKFENYESRDELAEELEDLGANIRSSISKKTTLLVTGLRVGPSKLEKAKS 191 Query: 704 LGVKIMNEEQFLF 716 LGV+I+ E + + Sbjct: 192 LGVRIITENELME 204 >gi|170106533|ref|XP_001884478.1| predicted protein [Laccaria bicolor S238N-H82] gi|164640824|gb|EDR05088.1| predicted protein [Laccaria bicolor S238N-H82] Length = 950 Score = 96.8 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG L R +A + + G V S KTD +++GDN G SK+ ++ Sbjct: 288 LAGLSFVFTGELSSFSRDEAIDLAKRFGGRVVLQPSSKTDYVVLGDNAGPSKIAAIKKHK 347 Query: 706 VKIMNEEQFLFLLQQYNTTLRIHDD 730 + ++E++FL L+ + ++ D Sbjct: 348 INTLSEDEFLGLIATRKGSGKLDDK 372 >gi|156841650|ref|XP_001644197.1| hypothetical protein Kpol_1059p29 [Vanderwaltozyma polyspora DSM 70294] gi|156114834|gb|EDO16339.1| hypothetical protein Kpol_1059p29 [Vanderwaltozyma polyspora DSM 70294] Length = 858 Score = 96.4 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 1/74 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + +VFTG L ++R A+ + GA V++ +SRKT ++++G+ G K+EK +QLG Sbjct: 148 LLGLTIVFTGVLPTLERGNAETLAKRYGARVTSSISRKTSVVVLGEEAGPKKVEKIKQLG 207 Query: 706 VKIMNEEQFLFLLQ 719 VK +NE+ F L+ Sbjct: 208 VKAINEDGFKQLIA 221 >gi|302307023|ref|NP_983504.2| ACR102Wp [Ashbya gossypii ATCC 10895] gi|299788800|gb|AAS51328.2| ACR102Wp [Ashbya gossypii ATCC 10895] Length = 840 Score = 96.4 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + +VFTG L I R A+ + GA V+ +S KT ++++GD G KLEK +QLG Sbjct: 147 LLGLTMVFTGVLPNIDRPAAEALAKKYGARVTKSISSKTSVVVLGDEAGPKKLEKIRQLG 206 Query: 706 VKIMNEEQFLFLLQ 719 +K ++E F L+ Sbjct: 207 IKAIDENGFRQLIN 220 >gi|300706363|ref|XP_002995454.1| hypothetical protein NCER_101643 [Nosema ceranae BRL01] gi|239604566|gb|EEQ81783.1| hypothetical protein NCER_101643 [Nosema ceranae BRL01] Length = 598 Score = 96.4 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 2/75 (2%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLG 705 +NK VFTG L + R A+ V LG V+ S+KTD ++VG PG KL+KAQ L Sbjct: 5 FKNKTFVFTGEL-TLDREYAKSKVILLGGRVTIAPSKKTDFLVVGAEPGPVKLKKAQDLN 63 Query: 706 VKIMNEEQFLFLLQQ 720 +KI+ E++F L + Sbjct: 64 IKIIYEQEFTTNLNE 78 >gi|238882346|gb|EEQ45984.1| activator 1 95 kDa subunit [Candida albicans WO-1] Length = 890 Score = 96.4 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 11/122 (9%) Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 +P + V F+ + A E + + + + + +VFTG + Sbjct: 154 AELPEIDPTKK---VNFFA-------LNAARNETTQTSVELPEAQPNCLTGLTIVFTGQM 203 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717 + R A++ Q GA V+ +S KT ++++G + G SK++K +Q +K ++E F+ L Sbjct: 204 PNLDRGTAEQTAKQYGAKVTKSISGKTSLVVLGTDAGPSKVQKIKQHKIKAIDEAGFIKL 263 Query: 718 LQ 719 L+ Sbjct: 264 LE 265 >gi|146423370|ref|XP_001487614.1| hypothetical protein PGUG_00991 [Meyerozyma guilliermondii ATCC 6260] Length = 708 Score = 96.0 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + +VFTG L + R +A+ Q GA V+ +S KT ++++GD G SK++K + Sbjct: 12 LSGLTIVFTGVLPNLDRDQAEGLAKQYGAKVTKAISGKTSLVVLGDEAGPSKVQKIKANK 71 Query: 706 VKIMNEEQFLFLLQQ 720 +K + EE FL LL++ Sbjct: 72 IKAITEESFLELLRR 86 >gi|190345075|gb|EDK36893.2| hypothetical protein PGUG_00991 [Meyerozyma guilliermondii ATCC 6260] Length = 708 Score = 96.0 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + +VFTG L + R +A+ Q GA V+ +S KT ++++GD G SK++K + Sbjct: 12 LSGLTIVFTGVLPNLDRDQAEGLAKQYGAKVTKAISGKTSLVVLGDEAGPSKVQKIKANK 71 Query: 706 VKIMNEEQFLFLLQQ 720 +K + EE FL LL++ Sbjct: 72 IKAITEESFLELLRR 86 >gi|195111811|ref|XP_002000470.1| GI10247 [Drosophila mojavensis] gi|193917064|gb|EDW15931.1| GI10247 [Drosophila mojavensis] Length = 1026 Score = 95.6 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 50/101 (49%), Gaps = 4/101 (3%) Query: 635 SIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + G E S ++ + TG L+ ++R +A + G V ++ +K + ++VG+ Sbjct: 242 NPGSKEIPKGSPDCLKGLTFLVTGILESMERDEAASVIKGFGGRVMTVVGKKLNYLVVGE 301 Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLL-QQYNTTLRIHDDD 731 G KL +A++ V I++E+ L+ ++ T++ + Sbjct: 302 EAGPKKLAQAEEFHVTILSEDGLFDLIREKSGETVKAKSSE 342 >gi|169865629|ref|XP_001839413.1| purine nucleotide binding protein [Coprinopsis cinerea okayama7#130] gi|116499532|gb|EAU82427.1| purine nucleotide binding protein [Coprinopsis cinerea okayama7#130] Length = 920 Score = 95.6 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 1/87 (1%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 P + VFTG L R +A + + G V S KTD +++G++ Sbjct: 222 PGSKPIPDGAPDALAGLSFVFTGELTAFSRDEAVDLAKRFGGRVVGQPSSKTDYVVLGED 281 Query: 694 PG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 G KLE ++ + ++E+ FL L+ Sbjct: 282 AGPKKLEAIKKHKLNTLDEDGFLNLIA 308 >gi|172038660|ref|YP_001805161.1| hypothetical protein cce_3747 [Cyanothece sp. ATCC 51142] gi|171700114|gb|ACB53095.1| unknown [Cyanothece sp. ATCC 51142] Length = 534 Score = 95.6 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 32/87 (36%), Positives = 50/87 (57%) Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697 + + +E KKLV G+L + R A+ V Q G +++ S +T ++VG NPG K Sbjct: 443 QEKIKNEIILEGKKLVVVGSLNSMNREIAKSLVQQAGGTLTSSPSSRTHYVVVGKNPGDK 502 Query: 698 LEKAQQLGVKIMNEEQFLFLLQQYNTT 724 L+KAQ+LG+ ++E+QFL L T Sbjct: 503 LKKAQKLGIAQLSEDQFLEALAATGIT 529 >gi|307166495|gb|EFN60580.1| Replication factor C subunit 1 [Camponotus floridanus] Length = 935 Score = 95.2 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 3/94 (3%) Query: 628 LLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L + + + G E + + + TG ++R +A+ + + +S K Sbjct: 212 LQRGGARNPGSKEIPTGAPNCLAGVSFLLTGVFDSLERDEAEHLIRKYSGRTVNTVSGKV 271 Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + IIVGD G +KL KA LG+K ++E+ L ++ Sbjct: 272 NYIIVGDEAGPAKLAKANSLGIKQISEDDLLEMI 305 >gi|238574191|ref|XP_002387514.1| hypothetical protein MPER_13721 [Moniliophthora perniciosa FA553] gi|215443056|gb|EEB88444.1| hypothetical protein MPER_13721 [Moniliophthora perniciosa FA553] Length = 108 Score = 95.2 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVK 707 VFTG L R +A + + G V S KTD +I+GDN G SKL ++ G+ Sbjct: 2 GLSFVFTGELSAFSREEAVDIAKRFGGRVVGQPSSKTDYVILGDNAGPSKLNAIKKHGLH 61 Query: 708 IMNEEQFLFLLQQYNTTLRI 727 +NE++FL L+ + ++ Sbjct: 62 TLNEDEFLNLIATRKGSGKL 81 >gi|67611464|ref|XP_667157.1| replication factor C subunit 1 [Cryptosporidium hominis TU502] gi|54658259|gb|EAL36923.1| replication factor C subunit 1 [Cryptosporidium hominis] Length = 854 Score = 95.2 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 8/81 (9%) Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN--------PGS 696 +V TGT R + +++V LG +++ +S +T +I G++ GS Sbjct: 127 GPFNGMSIVVTGTFNSNSRQEIEDFVKILGGKLTSAVSGRTSYLIAGNSLEDGRSIEEGS 186 Query: 697 KLEKAQQLGVKIMNEEQFLFL 717 K A+ GVKI++E++F+ + Sbjct: 187 KYRNAKSKGVKILSEDEFIEI 207 >gi|167390687|ref|XP_001739454.1| replication factor C large subunit [Entamoeba dispar SAW760] gi|165896833|gb|EDR24155.1| replication factor C large subunit, putative [Entamoeba dispar SAW760] Length = 576 Score = 94.9 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQ 702 +E E K V TG ++ R + +EY+T G V+ +S KT ++I G+ PG SK+EKA+ Sbjct: 159 ENEFEKKNFVLTGVYDELDRDEMKEYITNFGGNVATSISGKTGVLIAGEEPGPSKIEKAK 218 Query: 703 QLGVKIMNEEQFLFLLQQY 721 + G+ I NE+ +++ Sbjct: 219 EKGIAIWNEDDVFDYVKKK 237 >gi|67922509|ref|ZP_00516018.1| BRCT [Crocosphaera watsonii WH 8501] gi|67855680|gb|EAM50930.1| BRCT [Crocosphaera watsonii WH 8501] Length = 490 Score = 94.9 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 53/95 (55%) Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 + + + +++KKLV G+L + R KA+ V Q+G +++ S KT+ ++ Sbjct: 393 ESAEVEESKEQVKSELVLKSKKLVIVGSLDSMNREKAKSLVQQVGGNLTSSPSSKTNYVV 452 Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 VG NPG KL+KA++ G+ ++E QFL L T Sbjct: 453 VGKNPGDKLKKAKKFGIAQLSETQFLEALAAAGVT 487 >gi|217973787|ref|YP_002358538.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223] gi|217498922|gb|ACK47115.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223] Length = 300 Score = 94.9 bits (234), Expect = 5e-17, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 15/89 (16%) Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NP--------G 695 E+ + +VFTG L + R +A E +LG + + +S+KTD ++VG+ + Sbjct: 210 GELYGQTIVFTGELS-MTRAEAFEAAVELGLEIKSGVSKKTDYLVVGEQDANLVGPTGIS 268 Query: 696 SKLEKAQQL-----GVKIMNEEQFLFLLQ 719 SK KA+ L ++I++E++F+ L+ Sbjct: 269 SKQIKAEALIDEGFDIQIIDEDEFITLIN 297 >gi|242011918|ref|XP_002426690.1| Replication factor C subunit, putative [Pediculus humanus corporis] gi|212510861|gb|EEB13952.1| Replication factor C subunit, putative [Pediculus humanus corporis] Length = 842 Score = 94.5 bits (233), Expect = 6e-17, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 1/89 (1%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 +P+ K S+ ++N V TG L +++ KA E + + G V+ +S+KTD I+VG+ Sbjct: 110 NPNSKTIPKGTSNCLQNLTFVITGILDSLEKKKAVELIQKYGGRVTTQVSKKTDFIVVGE 169 Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 PG SKL KA++ K +NE++ L L+ + Sbjct: 170 EPGESKLSKAEKFCTKKINEDELLALITE 198 >gi|207109383|ref|ZP_03243545.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_CA4C1] Length = 53 Score = 94.5 bits (233), Expect = 6e-17, Method: Composition-based stats. Identities = 24/51 (47%), Positives = 37/51 (72%) Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA +S+ +S KTD +I G+NPGSKL A++ GV ++NEE+ L L++ Sbjct: 1 LENLGAKISSSVSAKTDFLIAGENPGSKLALAKKHGVSVLNEEELLKRLKE 51 >gi|50306785|ref|XP_453368.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49642502|emb|CAH00464.1| KLLA0D06897p [Kluyveromyces lactis] Length = 835 Score = 94.5 bits (233), Expect = 6e-17, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + +VFTGTL + R ++ + GA V+ +S+ T ++++G+ G KLE ++LG Sbjct: 152 LLGLTIVFTGTLPNLDRSTSENLAKRYGARVTKSISKNTSVVVLGEEAGPKKLENIKKLG 211 Query: 706 VKIMNEEQFLFLLQ 719 +K ++EE F L+ Sbjct: 212 IKAIDEEGFKRLIA 225 >gi|330948476|gb|EGH48736.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. pisi str. 1704B] Length = 60 Score = 94.1 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 +E LGA VS +S KT ++ G GSKL KA +LG+ +++E+ L L + + Sbjct: 1 KEKRESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRLTELGVAVD 60 >gi|307197038|gb|EFN78410.1| Replication factor C subunit 1 [Harpegnathos saltator] Length = 1045 Score = 93.7 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 3/94 (3%) Query: 628 LLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L + + + G ++ + + TG + ++R++ ++ + G + +S K Sbjct: 312 LQRGGARNPGSKTIPTGAKNCLAGLTFLTTGVFESLERNEVEDLIKNYGGRIVNSVSSKV 371 Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + I+VGD G +KL KA L +K + E+ L ++ Sbjct: 372 NYIMVGDEAGPAKLAKANTLSIKQITEDDLLEMI 405 >gi|156093631|ref|XP_001612854.1| replication factor C subunit 1 [Plasmodium vivax SaI-1] gi|148801728|gb|EDL43127.1| replication factor C subunit 1, putative [Plasmodium vivax] Length = 945 Score = 93.7 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 14/96 (14%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSK 697 N K V TG + R + Q + + G V + +S KT +I G+ N G K Sbjct: 232 PFHNLKFVLTGVFKNFSRDELQSKIKEHGGSVMSAVSSKTHYLIHGEYLEDGRMYNEGKK 291 Query: 698 LEKAQQLG------VKIMNEEQFLFLLQQYNTTLRI 727 +KA +L +KI+NEEQ L ++ Q Sbjct: 292 YQKAFELQKMSKSIIKILNEEQLLQMMPQEKDQTPK 327 >gi|221507917|gb|EEE33504.1| replication factor C subunit, putative [Toxoplasma gondii VEG] Length = 1260 Score = 93.3 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 29/128 (22%) Query: 621 NICAVEALLKEVSPSIGRHEKNVSSE---------IENKKLVFTGTLQKIQRHKAQEYVT 671 N + ++E + + +K S K VFTG L + R +A V Sbjct: 434 NRK--KRKVEESVVPLTKKDKEEGSTNPLAGSTSCFAGKTFVFTGVLDSMAREEAVSAVV 491 Query: 672 QLGAVVSAILSRKTDIIIVG---DN-----PGSKLEKAQQL----------GVKIMNEEQ 713 G ++ +S +TD ++ G ++ GSK KA QL +KI++E++ Sbjct: 492 GNGGRCTSAVSGRTDYLVAGALLEDGRDVTTGSKYRKALQLMHDGKGKQKTSLKILHEQE 551 Query: 714 FLFLLQQY 721 FL +L + Sbjct: 552 FLAMLPEN 559 >gi|221483441|gb|EEE21760.1| replication factor C subunit, putative [Toxoplasma gondii GT1] Length = 1260 Score = 93.3 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 29/128 (22%) Query: 621 NICAVEALLKEVSPSIGRHEKNVSSE---------IENKKLVFTGTLQKIQRHKAQEYVT 671 N + ++E + + +K S K VFTG L + R +A V Sbjct: 434 NRK--KRKVEESVVPLTKKDKEEGSTNPLAGSTSCFAGKTFVFTGVLDSMAREEAVSAVV 491 Query: 672 QLGAVVSAILSRKTDIIIVG---DN-----PGSKLEKAQQL----------GVKIMNEEQ 713 G ++ +S +TD ++ G ++ GSK KA QL +KI++E++ Sbjct: 492 GNGGRCTSAVSGRTDYLVAGALLEDGRDVTTGSKYRKALQLMHDGKGKQKTSLKILHEQE 551 Query: 714 FLFLLQQY 721 FL +L + Sbjct: 552 FLAMLPEN 559 >gi|237839249|ref|XP_002368922.1| replication factor C subunit, putative [Toxoplasma gondii ME49] gi|211966586|gb|EEB01782.1| replication factor C subunit, putative [Toxoplasma gondii ME49] Length = 1260 Score = 93.3 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 29/128 (22%) Query: 621 NICAVEALLKEVSPSIGRHEKNVSSE---------IENKKLVFTGTLQKIQRHKAQEYVT 671 N + ++E + + +K S K VFTG L + R +A V Sbjct: 434 NRK--KRKVEESVVPLTKKDKEEGSTNPLAGSTSCFAGKTFVFTGVLDSMAREEAVSAVV 491 Query: 672 QLGAVVSAILSRKTDIIIVG---DN-----PGSKLEKAQQL----------GVKIMNEEQ 713 G ++ +S +TD ++ G ++ GSK KA QL +KI++E++ Sbjct: 492 GNGGRCTSAVSGRTDYLVAGALLEDGRDVTTGSKYRKALQLMHDGKGKQKTSLKILHEQE 551 Query: 714 FLFLLQQY 721 FL +L + Sbjct: 552 FLAMLPEN 559 >gi|6324791|ref|NP_014860.1| Rfc1p [Saccharomyces cerevisiae S288c] gi|584899|sp|P38630|RFC1_YEAST RecName: Full=Replication factor C subunit 1; Short=Replication factor C1; AltName: Full=Activator 1 95 kDa subunit; AltName: Full=Cell division control protein 44 gi|437274|gb|AAC48916.1| Cdc44p [Saccharomyces cerevisiae] gi|841462|gb|AAC49060.1| Rfc1p [Saccharomyces cerevisiae] gi|1050769|emb|CAA63180.1| CDC44 [Saccharomyces cerevisiae] gi|1420505|emb|CAA99434.1| RFC1 [Saccharomyces cerevisiae] gi|256269587|gb|EEU04869.1| Rfc1p [Saccharomyces cerevisiae JAY291] gi|259149697|emb|CAY86501.1| Rfc1p [Saccharomyces cerevisiae EC1118] gi|285815096|tpg|DAA10989.1| TPA: Rfc1p [Saccharomyces cerevisiae S288c] Length = 861 Score = 93.3 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690 E+ IG + + + +VFTG L ++R ++ + GA V+ +S KT ++++ Sbjct: 142 EIVSEIGSFPEGKPNCLLGLTIVFTGVLPTLERGASEALAKRYGARVTKSISSKTSVVVL 201 Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 GD G KLEK +QL +K ++EE F L+ Sbjct: 202 GDEAGPKKLEKIKQLKIKAIDEEGFKQLIA 231 >gi|39942248|ref|XP_360661.1| hypothetical protein MGG_03204 [Magnaporthe oryzae 70-15] gi|145015808|gb|EDK00298.1| hypothetical protein MGG_03204 [Magnaporthe oryzae 70-15] Length = 1084 Score = 93.3 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG L+ I R +AQ V + G V+ S KT +++GD+ G SKL K +Q Sbjct: 344 LSGLTFVFTGLLKTIGREEAQALVKRYGGKVTGAPSGKTSFVVLGDDAGPSKLAKIKQHR 403 Query: 706 VKIMNEEQFLFLL 718 +K ++E L+ Sbjct: 404 LKTIDEVGLFHLI 416 >gi|190407527|gb|EDV10794.1| replication factor C subunit 1 [Saccharomyces cerevisiae RM11-1a] Length = 861 Score = 93.3 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690 E+ IG + + + +VFTG L ++R ++ + GA V+ +S KT ++++ Sbjct: 142 EIVSEIGSFPEGKPNCLLGLTIVFTGVLPTLERGASEALAKRYGARVTKSISSKTSVVVL 201 Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 GD G KLEK +QL +K ++EE F L+ Sbjct: 202 GDEAGPKKLEKIKQLKIKAIDEEGFKQLIA 231 >gi|66356684|ref|XP_625520.1| DNA replication repC1, AAA+ ATpase with a BRCT domain at the N-terminus [Cryptosporidium parvum Iowa II] gi|46226521|gb|EAK87515.1| DNA replication repC1, AAA+ ATpase with a BRCT domain at the N-terminus [Cryptosporidium parvum Iowa II] Length = 874 Score = 93.3 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 8/81 (9%) Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN--------PGS 696 +V TGT R + +++V LG +++ +S +T +I G++ GS Sbjct: 147 GPFNGMSIVVTGTFNNNSRQEIEDFVKILGGKLTSAVSGRTSYLIAGNSLEDGRSIEEGS 206 Query: 697 KLEKAQQLGVKIMNEEQFLFL 717 K A+ GV I++E++F+ + Sbjct: 207 KYRNAKSKGVNILSEDEFIEI 227 >gi|209876712|ref|XP_002139798.1| replication factor C subunit protein [Cryptosporidium muris RN66] gi|209555404|gb|EEA05449.1| replication factor C subunit protein, putative [Cryptosporidium muris RN66] Length = 845 Score = 93.3 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 8/89 (8%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---DN 693 EK+ + +E K +V TG +K R ++ V LG +++ +S +T +I G ++ Sbjct: 141 SITEKDPNLPLEGKSIVVTGLFEKKSRSDIEDLVKILGGKLTSAVSGRTSYLIAGYILED 200 Query: 694 P-----GSKLEKAQQLGVKIMNEEQFLFL 717 GSK + A ++I++E++F+ + Sbjct: 201 GRGITEGSKYKSAISKNIQILSEDEFINM 229 >gi|229137130|ref|ZP_04265749.1| DNA ligase [Bacillus cereus BDRD-ST26] gi|228646302|gb|EEL02517.1| DNA ligase [Bacillus cereus BDRD-ST26] Length = 74 Score = 93.3 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 3/77 (3%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57 Query: 72 NGPLNKIGGEMNLSLFK 88 + P ++G + L K Sbjct: 58 DSPSVRVGERFLIYLKK 74 >gi|302853225|ref|XP_002958129.1| DNA replication factor C complex subunit 1 [Volvox carteri f. nagariensis] gi|300256597|gb|EFJ40860.1| DNA replication factor C complex subunit 1 [Volvox carteri f. nagariensis] Length = 963 Score = 92.9 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 3/89 (3%) Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 P+ + E + + V TG L + R +A++ + + G V+ +S KT ++VG Sbjct: 204 PNYRKKEVPRGHPDCLTGRTFVITGILDSLMRPEAEDLIKRHGGKVTKSVSGKTAFVVVG 263 Query: 692 DNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 N G K A+Q K+++E+ LL+ Sbjct: 264 HNCGRGKYRDAKQHKTKLIDEDGLFALLK 292 >gi|224011579|ref|XP_002295564.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|209583595|gb|ACI64281.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 649 Score = 92.9 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 9/85 (10%) Query: 643 VSSEIENKKLVFTGTLQ--------KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694 ++ + K++V TGT + + +E + G V+ +S KTD +IVG +P Sbjct: 532 IAGILNGKRVVLTGTFPEVGGGTGLNAGKDRMKEMIESFGGKVTGSVSGKTDYLIVGRDP 591 Query: 695 G-SKLEKAQQLGVKIMNEEQFLFLL 718 G SK+ KA Q G+ +MN Q LL Sbjct: 592 GASKVGKAHQRGLPLMNILQLQHLL 616 Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 40/97 (41%), Gaps = 14/97 (14%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKI------QRH---KAQEYVTQLGAVVSAILSRK 684 P+ G +S ++ K + TG+ ++ + + + V+ S+ Sbjct: 295 PTPGVDGSADASFLKGKTFIITGSFPELVGGVKAKDAGVGDVKHCLESFEGKVTTRFSKM 354 Query: 685 TDIIIVGDNP-GSKLEKA--QQLGVKIMNEEQFLFLL 718 T+ ++VG + SK A ++ V ++N + LL Sbjct: 355 TNYLVVGRDAVQSKFSDAFTRE--VTVINLPRLKSLL 389 >gi|187776894|ref|ZP_02993367.1| hypothetical protein CLOSPO_00433 [Clostridium sporogenes ATCC 15579] gi|187775553|gb|EDU39355.1| hypothetical protein CLOSPO_00433 [Clostridium sporogenes ATCC 15579] Length = 242 Score = 92.9 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 59/262 (22%), Positives = 120/262 (45%), Gaps = 29/262 (11%) Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529 ++K+ V NI+ L + ++ FK+ + DIF L++ + I G Sbjct: 8 NKIKNMVGEKGLNIKKLNDETINILFKN----GFLNNVYDIFLLKKEELYK------ING 57 Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 F V L SI+K +N S E+FI++ I V + A ++A +L++ + +I Sbjct: 58 FTKEHVDELIKSIDKAKNCSFEKFIYASSIPKVKEKEAMAIAHTFLNFTDL------VID 111 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIE 648 NN+D L R+ + + + ++I RN + L V+P SI N+ Sbjct: 112 INNNDCDRLRRIDGISEELVESI------KRNRVFLVNLFMYVNPTSIDEKNANIKRY-- 163 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707 K TG L K + +E + + +V +++ D ++ GD + K+ A++ + Sbjct: 164 --KFCITGVLNKDT-NYYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220 Query: 708 IMNEEQFLFLLQQYNTTLRIHD 729 +++E Q + +L++ + ++ + Sbjct: 221 LISERQLVDILKEIKESNKMKN 242 >gi|151945307|gb|EDN63550.1| replication factor C subunit 1 [Saccharomyces cerevisiae YJM789] Length = 861 Score = 92.6 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690 E++ IG + + + +VFTG L ++R ++ + GA V+ +S KT ++++ Sbjct: 142 EIASEIGSFPEGKPNCLLGLTIVFTGVLPTLERGASEALAKRYGARVTKSISSKTSVVVL 201 Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 GD G KLEK +QL +K ++EE F L+ Sbjct: 202 GDEAGPKKLEKIKQLKIKAIDEEGFKQLIA 231 >gi|293374981|ref|ZP_06621276.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909] gi|325843349|ref|ZP_08167932.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1] gi|292646391|gb|EFF64406.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909] gi|325489378|gb|EGC91751.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1] Length = 306 Score = 92.6 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 14/106 (13%) Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 + +PS + S ++K +VFTGTL+ + R A + ++QLG V + ++RKTD + Sbjct: 201 KRNFTPSPLPFISSKSDVFKHKTVVFTGTLKSMSRLSAIQLISQLGGTVGSSVTRKTDFL 260 Query: 689 IVG---------DNPGSKLEKAQQL-----GVKIMNEEQFLFLLQQ 720 IV +KL+KA +L ++I+NE +FL L + Sbjct: 261 IVSHPAVYELQPHEMSTKLKKAIELIYKGQAIQILNESEFLEQLTK 306 >gi|227894105|ref|ZP_04011910.1| conserved hypothetical protein [Lactobacillus ultunensis DSM 16047] gi|227864083|gb|EEJ71504.1| conserved hypothetical protein [Lactobacillus ultunensis DSM 16047] Length = 183 Score = 92.6 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + + S+ K + TGTL R + + + +G + TD +IVG+ Sbjct: 90 DIPGDSTKNDESNAFYGKNVSATGTLTNYTRKEIGQIINNIGGKFQMNPGKSTDYLIVGN 149 Query: 693 --NPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 P +K +KA++LG+ I++E FL ++ Y+ Sbjct: 150 LNKPSAKQKKAEKLGIPILSENDFLSMIAGYD 181 >gi|33322833|gb|AAQ07152.1|AF496462_1 DNA ligase [Lactobacillus delbrueckii subsp. lactis] Length = 69 Score = 92.6 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 33/53 (62%) Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + LGA V+ +S+KTD ++ G++ GSKL KA+ L + + E + + +++ Sbjct: 1 LQALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKG 53 >gi|169347247|ref|ZP_02866186.1| exonuclease family protein [Clostridium perfringens C str. JGS1495] gi|169296643|gb|EDS78774.1| exonuclease family protein [Clostridium perfringens C str. JGS1495] Length = 302 Score = 92.6 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 14/97 (14%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----- 691 +K ++ K +VFTG L + R +A V + G VS+ +S+KT+ ++ G Sbjct: 206 KEKKKEGEISLKCKNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLVTGIRDLS 265 Query: 692 ---DNPGS-KLEKAQQL-----GVKIMNEEQFLFLLQ 719 +N S KL+KA+ L +KI+NEE+FL +++ Sbjct: 266 ELKENEKSIKLKKAENLIKENFDIKIINEEEFLSIIE 302 >gi|110802120|ref|YP_698713.1| DNA polymerase III subunit epsilon [Clostridium perfringens SM101] gi|110682621|gb|ABG85991.1| exonuclease family protein [Clostridium perfringens SM101] Length = 302 Score = 92.6 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 14/97 (14%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----- 691 +K ++ K +VFTG L + R +A V + G VS+ +S+KT+ ++ G Sbjct: 206 KEKKKEGEISLKCKNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLVTGIRDLS 265 Query: 692 ---DNPGS-KLEKAQQL-----GVKIMNEEQFLFLLQ 719 +N S KL+KA+ L +KI+NEE+FL +++ Sbjct: 266 ELKENEKSIKLKKAENLIKENFDIKIINEEEFLSIIE 302 >gi|168206308|ref|ZP_02632313.1| exonuclease family protein [Clostridium perfringens E str. JGS1987] gi|170662180|gb|EDT14863.1| exonuclease family protein [Clostridium perfringens E str. JGS1987] Length = 302 Score = 92.6 bits (228), Expect = 3e-16, Method: Composition-based stats. Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 14/97 (14%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----- 691 +K+ ++ K +VFTG L + R +A V + G VS+ +S+KT+ +I G Sbjct: 206 KEKKKDGEISLKCKNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLITGIRDLN 265 Query: 692 ---DNPGS-KLEKAQQL-----GVKIMNEEQFLFLLQ 719 +N S KL+KA+ L +KI+NEE+FL +++ Sbjct: 266 KLKENEKSIKLKKAENLIKENFDIKIINEEEFLSIIE 302 >gi|168215255|ref|ZP_02640880.1| exonuclease family protein [Clostridium perfringens CPE str. F4969] gi|168216790|ref|ZP_02642415.1| exonuclease family protein [Clostridium perfringens NCTC 8239] gi|170713347|gb|EDT25529.1| exonuclease family protein [Clostridium perfringens CPE str. F4969] gi|182381117|gb|EDT78596.1| exonuclease family protein [Clostridium perfringens NCTC 8239] Length = 302 Score = 92.2 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 14/97 (14%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----- 691 +K+ ++ K +VFTG L + R +A V + G VS+ +S+KT+ +I G Sbjct: 206 KEKKKDGEISLKCKNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLITGIRDLN 265 Query: 692 ---DNPGS-KLEKAQQL-----GVKIMNEEQFLFLLQ 719 +N S KL+KA+ L +KI+NEE+FL +++ Sbjct: 266 KLKENEKSIKLKKAENLIKENFDIKIINEEEFLSIIE 302 >gi|110799993|ref|YP_696096.1| DNA polymerase III subunit epsilon [Clostridium perfringens ATCC 13124] gi|168209994|ref|ZP_02635619.1| exonuclease family protein [Clostridium perfringens B str. ATCC 3626] gi|110674640|gb|ABG83627.1| exonuclease family protein [Clostridium perfringens ATCC 13124] gi|170711840|gb|EDT24022.1| exonuclease family protein [Clostridium perfringens B str. ATCC 3626] Length = 302 Score = 92.2 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 14/97 (14%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----- 691 +K ++ K +VFTG L + R +A V + G VS+ +S+KT+ +I G Sbjct: 206 KEKKKEGEISLKCKNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLITGIRDLN 265 Query: 692 ---DNPGS-KLEKAQQL-----GVKIMNEEQFLFLLQ 719 +N S KL+KA+ L +KI+NEE+FL +++ Sbjct: 266 KLKENEKSIKLKKAENLIKENFDIKIINEEEFLSIIE 302 >gi|320170447|gb|EFW47346.1| replication factor C subunit 1 [Capsaspora owczarzaki ATCC 30864] Length = 1056 Score = 92.2 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 +E V TG I R + + G V+ +S+KT ++ G + G SK A+++G Sbjct: 308 LEGLTFVVTGIFDAIDRTDLENLIKAHGGKVTGAVSKKTTYLVAGRDCGISKTRTAKEVG 367 Query: 706 VKIMNEEQFLFLL 718 KI++++ L+ Sbjct: 368 TKIVDDDAVFDLI 380 >gi|18310383|ref|NP_562317.1| DNA polymerase III subunit epsilon [Clostridium perfringens str. 13] gi|18145063|dbj|BAB81107.1| probable DNA polymerase III epsilon chain [Clostridium perfringens str. 13] Length = 302 Score = 92.2 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 14/97 (14%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----- 691 +K ++ K +VFTG L + R +A V + G VS+ +S+KT+ +I G Sbjct: 206 KEKKKEGEISLKCKNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLITGIRDLN 265 Query: 692 ---DNPGS-KLEKAQQL-----GVKIMNEEQFLFLLQ 719 +N S KL+KA+ L +KI+NEE+FL +++ Sbjct: 266 KLKENEKSIKLKKAENLIKENFDIKIINEEEFLSIIE 302 >gi|299472502|emb|CBN77287.1| conserved unknown protein [Ectocarpus siliculosus] Length = 978 Score = 92.2 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 10/99 (10%) Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 P+ G+ E V E + K V +G L + R A++ + Q G V+ +S +T +++G Sbjct: 242 PNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLG 301 Query: 692 --------DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 GSK ++A + +I++E+ +L+ N Sbjct: 302 TVLDDGRPPEEGSKYKRAMVMKTRIIDEDGLFKMLRDSN 340 >gi|182626433|ref|ZP_02954185.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721] gi|177908230|gb|EDT70788.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721] Length = 302 Score = 91.8 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 14/97 (14%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----- 691 +K+ ++ K +VFTG L + R +A V + G VS+ +S+KT+ +I G Sbjct: 206 KEKKKDGEISLKCKNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLITGIRDLN 265 Query: 692 ---DNPGS-KLEKAQQL-----GVKIMNEEQFLFLLQ 719 +N S KLEKA+ L +KI+NEE+FL +++ Sbjct: 266 KLKENEKSIKLEKAENLIKENFDIKIINEEEFLSIIE 302 >gi|256071069|ref|XP_002571864.1| chromosome transmission fidelity factor [Schistosoma mansoni] gi|238657012|emb|CAZ28094.1| chromosome transmission fidelity factor, putative [Schistosoma mansoni] Length = 1015 Score = 91.8 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 ++ + TG L+ I+R A + G V L +KTD ++VG PG +K+EKA L Sbjct: 211 LKGLNFLITGILECIEREDAANLIQNCGGKVLKTLGKKTDYLVVGREPGAAKIEKANNLK 270 Query: 706 VKIMNEEQFLFLLQQYNTTLRIH 728 +K + EE ++++ + +H Sbjct: 271 IKQITEEYLFEMIEKSSNVPLVH 293 >gi|119481305|ref|XP_001260681.1| chromosome transmission fidelity factor [Neosartorya fischeri NRRL 181] gi|119408835|gb|EAW18784.1| chromosome transmission fidelity factor [Neosartorya fischeri NRRL 181] Length = 1064 Score = 91.4 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG L + R + Q V + G V+ S KT +++G + G +KL+K Q+ Sbjct: 333 LAGLSFVFTGVLDTLGREEGQNLVKKYGGKVTTAPSSKTSYVVLGSDAGPNKLKKIQEHN 392 Query: 706 VKIMNEEQFLFLLQQ 720 ++ +NEE L+++ Sbjct: 393 LRTINEEGLFELIRR 407 >gi|255713750|ref|XP_002553157.1| KLTH0D10296p [Lachancea thermotolerans] gi|238934537|emb|CAR22719.1| KLTH0D10296p [Lachancea thermotolerans] Length = 864 Score = 91.0 bits (224), Expect = 6e-16, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 1/86 (1%) Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694 + + + +VFTG L I+R A+ + GA V+ +S KT ++++GD Sbjct: 150 EEANFPEGAPNCLLGLTIVFTGQLPTIERGVAEAIAKRYGARVTKSISSKTSVVVLGDEA 209 Query: 695 G-SKLEKAQQLGVKIMNEEQFLFLLQ 719 G KLEK +QL +K ++E+ F L+ Sbjct: 210 GPKKLEKIKQLKIKAIDEDGFKQLVA 235 >gi|213402719|ref|XP_002172132.1| replication factor C subunit 1 [Schizosaccharomyces japonicus yFS275] gi|212000179|gb|EEB05839.1| replication factor C subunit 1 [Schizosaccharomyces japonicus yFS275] Length = 930 Score = 91.0 bits (224), Expect = 7e-16, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 3/87 (3%) Query: 635 SIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 G + V TG L+ + R +A + + Q G V+ S KTD +++GD Sbjct: 204 EQGSKPIPSGQPGCLSGLSFVITGILETLTRQEAGDLIKQYGGKVTGAPSTKTDFVVLGD 263 Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLL 718 N G K+E + ++ ++E+ LFL+ Sbjct: 264 NAGPRKVETIKTHNIRAIDEDGLLFLI 290 >gi|146322944|ref|XP_755554.2| DNA replication factor C subunit Rfc1 [Aspergillus fumigatus Af293] gi|129558538|gb|EAL93516.2| DNA replication factor C subunit Rfc1, putative [Aspergillus fumigatus Af293] gi|159129617|gb|EDP54731.1| DNA replication factor C subunit Rfc1, putative [Aspergillus fumigatus A1163] Length = 1085 Score = 90.6 bits (223), Expect = 9e-16, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG L + R + Q V + G V+ S KT +++G + G +KL+K Q+ Sbjct: 336 LAGLSFVFTGVLDTLGREEGQNLVKKYGGKVTTAPSSKTSYVVLGSDAGPNKLKKIQEHN 395 Query: 706 VKIMNEEQFLFLLQQ 720 ++ +NE+ L+++ Sbjct: 396 LRTINEQGLFELIRR 410 >gi|320586272|gb|EFW98951.1| DNA replication factor c subunit [Grosmannia clavigera kw1407] Length = 1507 Score = 90.6 bits (223), Expect = 9e-16, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + + VFTG LQ I R + Q V + G V+ SR T +++GD+ G SKL K QL Sbjct: 754 LVGQTFVFTGLLQTISRDEGQALVKRYGGKVTTAPSRNTSWVVLGDDAGPSKLAKISQLS 813 Query: 706 VKIMNEEQFLFLLQQ 720 ++ ++E L+++ Sbjct: 814 LRTIDENGLFELIKR 828 >gi|326437790|gb|EGD83360.1| hypothetical protein PTSG_03969 [Salpingoeca sp. ATCC 50818] Length = 1046 Score = 90.6 bits (223), Expect = 9e-16, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVK 707 K V TG L I+R A+ + G V +S + + I+ G PG SK++KA++L + Sbjct: 340 GLKFVLTGVLDSIERDTAERLIKDHGGAVQKSVSGRVNYIVAGIEPGPSKMKKAEELKLN 399 Query: 708 IMNEEQFLFLL 718 +++E+ L+ Sbjct: 400 VIDEDGLFDLI 410 >gi|145232225|ref|XP_001399565.1| replication factor C subunit 1 [Aspergillus niger CBS 513.88] gi|134056478|emb|CAK37567.1| unnamed protein product [Aspergillus niger] Length = 1058 Score = 90.2 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG L + R + Q V + G V+ S KT +++G + G KL +Q Sbjct: 327 LAGLSFVFTGVLDTLGRDEGQNLVKKYGGKVTGAPSSKTSYVVLGADAGPKKLATIKQHN 386 Query: 706 VKIMNEEQFLFLLQQ 720 +K +NEE L+++ Sbjct: 387 LKTINEEGLFELIRR 401 >gi|327349015|gb|EGE77872.1| chromosome transmission fidelity factor [Ajellomyces dermatitidis ATCC 18188] Length = 1065 Score = 90.2 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG L + R + Q V + G V++ S KT +++G++ G KLE ++ G Sbjct: 330 LAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSGPSSKTSYVVLGNDAGPKKLETIRKFG 389 Query: 706 VKIMNEEQFLFLLQQ 720 +K +NE+ L+++ Sbjct: 390 LKTINEDGLFELIRR 404 >gi|261195366|ref|XP_002624087.1| chromosome transmission fidelity factor [Ajellomyces dermatitidis SLH14081] gi|239587959|gb|EEQ70602.1| chromosome transmission fidelity factor [Ajellomyces dermatitidis SLH14081] Length = 1065 Score = 90.2 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG L + R + Q V + G V++ S KT +++G++ G KLE ++ G Sbjct: 330 LAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSGPSSKTSYVVLGNDAGPKKLETIRKFG 389 Query: 706 VKIMNEEQFLFLLQQ 720 +K +NE+ L+++ Sbjct: 390 LKTINEDGLFELIRR 404 >gi|239610551|gb|EEQ87538.1| chromosome transmission fidelity factor [Ajellomyces dermatitidis ER-3] Length = 1068 Score = 90.2 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG L + R + Q V + G V++ S KT +++G++ G KLE ++ G Sbjct: 333 LAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSGPSSKTSYVVLGNDAGPKKLETIRKFG 392 Query: 706 VKIMNEEQFLFLLQQ 720 +K +NE+ L+++ Sbjct: 393 LKTINEDGLFELIRR 407 >gi|253742407|gb|EES99241.1| Replication factor C, subunit 1 [Giardia intestinalis ATCC 50581] Length = 886 Score = 89.9 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQ 703 + + V TG L+ + + Y+ LG V+ +S KT +IVGD+PG +KL A+ Sbjct: 173 NSLSKLIFVRTGNLRTMSDTDMKLYIANLGGTVTTSVSGKTSYLIVGDDPGATKLRDAKA 232 Query: 704 LGVKIMNEEQFLFLLQQYNT 723 V+I++E++F L+ + + Sbjct: 233 KFVRIISEKEFYDLIVKKGS 252 >gi|254583820|ref|XP_002497478.1| ZYRO0F06446p [Zygosaccharomyces rouxii] gi|238940371|emb|CAR28545.1| ZYRO0F06446p [Zygosaccharomyces rouxii] Length = 841 Score = 89.5 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + LVFTGTL I+R A+ + GA ++ +S KT +++G+ G K++ ++LG Sbjct: 137 LLGLTLVFTGTLPNIERGVAESIAKRYGARITKSISSKTSAVVLGEEAGPKKVDTIKKLG 196 Query: 706 VKIMNEEQFLFLL 718 +K ++EE F L+ Sbjct: 197 IKAIDEEGFKQLI 209 >gi|251779366|ref|ZP_04822286.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083681|gb|EES49571.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 309 Score = 89.5 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 14/84 (16%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSK 697 ++ +VFTG L + R +A V +LG V + +++KT ++ D +K Sbjct: 221 FTDEVVVFTGGLASMTRDEAIRLVRKLGGSVGSSVTKKTTYLVTNTKDIDNLHRDEMSTK 280 Query: 698 LEKAQQL-----GVKIMNEEQFLF 716 L KA L G+K +NEE FL Sbjct: 281 LRKAVDLKNKGQGIKCLNEEDFLK 304 >gi|295674213|ref|XP_002797652.1| replication factor C subunit 1 [Paracoccidioides brasiliensis Pb01] gi|226280302|gb|EEH35868.1| replication factor C subunit 1 [Paracoccidioides brasiliensis Pb01] Length = 1066 Score = 89.5 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG L + R + Q V + G V+ S KT +++GD+ G KLE ++ G Sbjct: 328 LVGLSFVFTGVLSSLGREEGQSLVKRYGGKVTTGPSSKTSYVVLGDDAGPKKLETIKKFG 387 Query: 706 VKIMNEEQFLFLLQQ 720 +K +NEE L+++ Sbjct: 388 LKTINEEGLFELIRR 402 >gi|225684712|gb|EEH22996.1| replication factor C subunit 1 [Paracoccidioides brasiliensis Pb03] Length = 1066 Score = 89.5 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG L + R + Q V + G V+ S KT +++GD+ G KLE ++ G Sbjct: 328 LVGLSFVFTGVLSSLGREEGQSLVKRYGGKVTTGPSSKTSYVVLGDDAGPKKLETIKKFG 387 Query: 706 VKIMNEEQFLFLLQQ 720 +K +NEE L+++ Sbjct: 388 LKTINEEGLFELIRR 402 >gi|226286728|gb|EEH42241.1| replication factor C subunit 1 [Paracoccidioides brasiliensis Pb18] Length = 1066 Score = 89.5 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG L + R + Q V + G V+ S KT +++GD+ G KLE ++ G Sbjct: 328 LVGLSFVFTGVLSSLGREEGQSLVKRYGGKVTTGPSSKTSYVVLGDDAGPKKLETIKKFG 387 Query: 706 VKIMNEEQFLFLLQQ 720 +K +NEE L+++ Sbjct: 388 LKTINEEGLFELIRR 402 >gi|269860225|ref|XP_002649835.1| replication factor C subunit [Enterocytozoon bieneusi H348] gi|220066776|gb|EED44248.1| replication factor C subunit [Enterocytozoon bieneusi H348] Length = 570 Score = 89.5 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 2/81 (2%) Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIM 709 VFTG + K+ R AQ + QLG ++ +S KT +IVG++PG SKL+KA++LG+ I+ Sbjct: 9 TFVFTGIM-KMDREHAQFQIRQLGHRSTSAISGKTTHLIVGNDPGVSKLKKAKELGILIL 67 Query: 710 NEEQFLFLLQQYNTTLRIHDD 730 NE +F LL + +++ + Sbjct: 68 NETEFEQLLHKMQESVKKREA 88 >gi|121715788|ref|XP_001275503.1| chromosome transmission fidelity factor [Aspergillus clavatus NRRL 1] gi|119403660|gb|EAW14077.1| chromosome transmission fidelity factor [Aspergillus clavatus NRRL 1] Length = 1068 Score = 88.7 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG L + R + Q V + G V+ S KT +++G + G KL+ Q Sbjct: 338 LAGLSFVFTGVLDTLGRDEGQALVKKYGGKVTTAPSSKTSYVVLGSDAGPKKLKTIQDHK 397 Query: 706 VKIMNEEQFLFLLQQ 720 +K +NEE L+++ Sbjct: 398 LKTINEEGLFELIRR 412 >gi|237796641|ref|YP_002864193.1| BRCT domain protein [Clostridium botulinum Ba4 str. 657] gi|229263554|gb|ACQ54587.1| BRCT domain protein [Clostridium botulinum Ba4 str. 657] Length = 242 Score = 88.7 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 61/262 (23%), Positives = 116/262 (44%), Gaps = 29/262 (11%) Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529 R+K+ V NI+ L + ++ FK+ + DIF L++ + I G Sbjct: 8 NRIKNMVGEKGINIKELNDETINILFKN----GLLNNAYDIFLLKKEELYK------IDG 57 Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 V L SINK +N S E+FI++ I V + A +A +L++ + +I Sbjct: 58 LTKEYVDKLIKSINKTKNCSFEKFIYACSIPKVKEKEAIVIAHTFLNFTDL------VID 111 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIE 648 NN+D L R+ + + I ++I RN + L V+P SI N+ Sbjct: 112 INNNDCDRLKRIDGMSEEIVESI------KRNKVLLVNLFMYVNPISIDEKNANIKRY-- 163 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707 K TG L K +E + + +V +++ D ++ GD + K+ A++ + Sbjct: 164 --KFCITGVLNKDT-SYYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220 Query: 708 IMNEEQFLFLLQQYNTTLRIHD 729 +++E Q + +L++ ++ + Sbjct: 221 LISERQLVDILKEIKENNKMKN 242 >gi|320035705|gb|EFW17646.1| chromosome transmission fidelity factor [Coccidioides posadasii str. Silveira] Length = 1045 Score = 88.7 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%) Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694 + + VFTG L + R + Q V + G V+ S KT +++G + Sbjct: 288 EPAELPIGAENCLAGLSFVFTGVLDSLGRDEGQALVKRYGGKVTGAPSSKTSYVVLGSDA 347 Query: 695 G-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 G KLE ++ +K +NE L+++ Sbjct: 348 GPKKLETIRKHNLKTINEYGLFELIRK 374 >gi|255946327|ref|XP_002563931.1| Pc20g14550 [Penicillium chrysogenum Wisconsin 54-1255] gi|211588666|emb|CAP86784.1| Pc20g14550 [Penicillium chrysogenum Wisconsin 54-1255] Length = 1053 Score = 88.7 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG L+ + R + + V + G V S KT +++G + G KLE + Sbjct: 326 LAGLSFVFTGVLESLGREEGAQLVKKYGGKVVGAPSSKTSYVVLGADAGPKKLETIAKHK 385 Query: 706 VKIMNEEQFLFLLQQ 720 +K +NE+ L+++ Sbjct: 386 IKTINEDGLFELIRR 400 >gi|145483437|ref|XP_001427741.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124394824|emb|CAK60343.1| unnamed protein product [Paramecium tetraurelia] Length = 807 Score = 88.7 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 13/110 (11%) Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 P N ++ V KN + +V +G L R K ++++ GA Sbjct: 82 SKPENKKQMD-----VEIEKQDVFKNDPDLLNGLTIVLSGILNVCSRDKFEQFLKNNGAK 136 Query: 677 VSAILSRKTDIIIVGDN--------PGSKLEKAQQLGVKIMNEEQFLFLL 718 V+ +S KT+ +IVGD G+K ++A + G KI+ E + L Sbjct: 137 VTGSVSGKTNYLIVGDKLEDGRKGEEGNKFKEATKKGTKIIRENELNNWL 186 >gi|303315067|ref|XP_003067541.1| BRCA1 C Terminus domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240107211|gb|EER25396.1| BRCA1 C Terminus domain containing protein [Coccidioides posadasii C735 delta SOWgp] Length = 1068 Score = 88.3 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%) Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694 + + VFTG L + R + Q V + G V+ S KT +++G + Sbjct: 311 EPAELPIGAENCLAGLSFVFTGVLDSLGRDEGQALVKRYGGKVTGAPSSKTSYVVLGSDA 370 Query: 695 G-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 G KLE ++ +K +NE L+++ Sbjct: 371 GPKKLETIRKHNLKTINEYGLFELIRK 397 >gi|119190369|ref|XP_001245791.1| hypothetical protein CIMG_05232 [Coccidioides immitis RS] Length = 1068 Score = 88.3 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%) Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694 + + VFTG L + R + Q V + G V+ S KT +++G + Sbjct: 311 EPAELPIGAENCLAGLSFVFTGVLDSLGRDEGQALVKRYGGKVTGAPSSKTSYVVLGSDA 370 Query: 695 G-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 G KLE ++ +K +NE L+++ Sbjct: 371 GPKKLETIRKHNLKTINEYGLFELIRK 397 >gi|170760368|ref|YP_001788506.1| BRCT domain-containing protein [Clostridium botulinum A3 str. Loch Maree] gi|169407357|gb|ACA55768.1| BRCT domain protein [Clostridium botulinum A3 str. Loch Maree] Length = 242 Score = 88.3 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 61/262 (23%), Positives = 116/262 (44%), Gaps = 29/262 (11%) Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529 R+K+ V NI+ L + ++ FK+ + DIF L++ + I G Sbjct: 8 NRIKNMVGEKGINIKELNDKTINILFKN----GLLNNAYDIFLLKKEELYK------IDG 57 Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 V L SINK +N S E+FI++ I V + A +A +L++ + +I Sbjct: 58 LTKEYVDELIKSINKTKNCSFEKFIYACSIPKVTEKEAIVIAHTFLNFTDL------VID 111 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIE 648 NN+D L R+ + + I ++I RN + L V+P SI N+ Sbjct: 112 INNNDCDRLKRIDGMSEEIVESI------KRNKVLLVNLFMYVNPISIDEKNANIKRY-- 163 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707 K TG L K +E + + +V +++ D ++ GD + K+ A++ + Sbjct: 164 --KFCITGVLNKDT-SYYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220 Query: 708 IMNEEQFLFLLQQYNTTLRIHD 729 +++E Q + +L++ ++ + Sbjct: 221 LISERQLVDILKEIKENNKMKN 242 >gi|154281839|ref|XP_001541732.1| hypothetical protein HCAG_03830 [Ajellomyces capsulatus NAm1] gi|150411911|gb|EDN07299.1| hypothetical protein HCAG_03830 [Ajellomyces capsulatus NAm1] Length = 1066 Score = 88.3 bits (217), Expect = 5e-15, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG L + R + Q V + G V++ S KT+ +++G + G KLE ++ G Sbjct: 329 LAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSAPSSKTNYVVLGSDAGPKKLETIRKFG 388 Query: 706 VKIMNEEQFLFLLQQ 720 +K +NE+ L+++ Sbjct: 389 LKSINEDGLFELIRR 403 >gi|325093242|gb|EGC46552.1| chromosome transmission fidelity protein [Ajellomyces capsulatus H88] Length = 1071 Score = 87.9 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG L + R + Q V + G V++ S KT+ +++G + G KLE ++ G Sbjct: 334 LAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSAPSSKTNYVVLGSDAGPKKLETIRKFG 393 Query: 706 VKIMNEEQFLFLLQQ 720 +K +NE+ L+++ Sbjct: 394 LKSINEDGLFELIRR 408 >gi|312128938|ref|YP_003996278.1| exonuclease rnase t and DNA polymerase iii [Leadbetterella byssophila DSM 17132] gi|311905484|gb|ADQ15925.1| Exonuclease RNase T and DNA polymerase III [Leadbetterella byssophila DSM 17132] Length = 303 Score = 87.9 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 71/203 (34%), Gaps = 20/203 (9%) Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 + L S + + + + + + ++ + +L + + A + A Sbjct: 102 YQLPFPTLNYSCSYIFSKKVWQGLPAYDLKTLCKVNNINLKHHRAGADSKATAELTLKAF 161 Query: 591 NNDDWLSLIRVPLVGDI---IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647 + + + P + + N S Sbjct: 162 EIAGV---SSIDDFPEKLKTTVGQLYNGGYKPAETKRIYKAKDLTKIEGDPTKHNTESIF 218 Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKL 698 + +VFTG L + R +AQ+ + +G ++ ++++TD ++VG D SK Sbjct: 219 YGRTVVFTGALSSMVRAEAQQTIADIGGILGNGVTKETDFLVVGQQDYRVVGEDGMSSKQ 278 Query: 699 EKAQQL-----GVKIMNEEQFLF 716 +KA L ++I++E+ FL Sbjct: 279 KKAISLIEKGSSLEILSEDDFLK 301 >gi|168183502|ref|ZP_02618166.1| BRCT domain protein [Clostridium botulinum Bf] gi|182673380|gb|EDT85341.1| BRCT domain protein [Clostridium botulinum Bf] Length = 242 Score = 87.9 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 60/262 (22%), Positives = 115/262 (43%), Gaps = 29/262 (11%) Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529 R+K+ V NI+ L + ++ FK+ + DIF L++ + I G Sbjct: 8 NRIKNMVGEKGINIKELNDETINILFKN----GLLNNAYDIFLLKKEELYK------IDG 57 Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 V L SINK +N S E+FI++ I V + A +A + ++ + +I Sbjct: 58 LTKEYVDKLIKSINKTKNCSFEKFIYACSIPKVTEKEAIVIAHTFFNFTDL------VID 111 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIE 648 NN+D L R+ + + I ++I RN + L V+P SI N+ Sbjct: 112 INNNDCDRLKRIDGMSEEIVESI------KRNKVLLVNLFMYVNPISIDEKNANIKRY-- 163 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707 K TG L K +E + + +V +++ D ++ GD + K+ A++ + Sbjct: 164 --KFCITGVLNKDT-SYYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220 Query: 708 IMNEEQFLFLLQQYNTTLRIHD 729 +++E Q + +L++ ++ + Sbjct: 221 LISERQLVDILKEIKENNKMKN 242 >gi|82541068|ref|XP_724804.1| replication factor C, 140 kDa subunit [Plasmodium yoelii yoelii str. 17XNL] gi|23479576|gb|EAA16369.1| replication factor C, 140 kDa subunit [Plasmodium yoelii yoelii] Length = 888 Score = 87.9 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 19/118 (16%) Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +N + + E + + ++E NVS NKK V TG + R Q + + Sbjct: 150 EQNRSKKKHISTEDNNILQKNETNVSQNFDYLPFINKKFVLTGVFKTYSRDDLQNKIKEH 209 Query: 674 GAVVSAILSRKTDIIIVGD--------NPGSKLEKAQQLG------VKIMNEEQFLFL 717 G V + +S +T ++ G+ + G K +KA +L +KI+NEE+ L + Sbjct: 210 GGSVMSAVSSRTHYLVHGEYLEDGRLYSEGKKYQKAYELSKQSKSIIKILNEEELLQM 267 >gi|240275879|gb|EER39392.1| chromosome transmission fidelity factor [Ajellomyces capsulatus H143] Length = 1071 Score = 87.9 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG L + R + Q V + G V++ S KT+ +++G + G KLE ++ G Sbjct: 334 LAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSAPSSKTNYVVLGSDAGPKKLETIRKFG 393 Query: 706 VKIMNEEQFLFLLQQ 720 +K +NE+ L+++ Sbjct: 394 LKSINEDGLFELIRR 408 >gi|225563290|gb|EEH11569.1| chromosome transmission fidelity factor [Ajellomyces capsulatus G186AR] Length = 1071 Score = 87.9 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG L + R + Q V + G V++ S KT+ +++G + G KLE ++ G Sbjct: 334 LAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSAPSSKTNYVVLGSDAGPKKLETIRKFG 393 Query: 706 VKIMNEEQFLFLLQQ 720 +K +NE+ L+++ Sbjct: 394 LKSINEDGLFELIRR 408 >gi|7493936|pir||T18306 replication factor C protein - Emericella nidulans gi|2258283|gb|AAB63574.1| replication factor C like protein [Emericella nidulans] gi|27735373|gb|AAB63523.2| replication factor C like protein [Emericella nidulans] Length = 1092 Score = 87.9 bits (216), Expect = 6e-15, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG L + R + Q V + G V+ S KT +++G + G SKL + Sbjct: 328 LAGLTFVFTGVLDTLGREEGQALVKRYGGKVTTAPSGKTSFVVLGSDAGPSKLATISKHK 387 Query: 706 VKIMNEEQFLFLLQQ 720 +K ++EE L+++ Sbjct: 388 LKTISEEGLFELIRR 402 >gi|67540266|ref|XP_663907.1| hypothetical protein AN6303.2 [Aspergillus nidulans FGSC A4] gi|40739497|gb|EAA58687.1| hypothetical protein AN6303.2 [Aspergillus nidulans FGSC A4] gi|259479483|tpe|CBF69746.1| TPA: Replication factor C like protein [Source:UniProtKB/TrEMBL;Acc:P78622] [Aspergillus nidulans FGSC A4] Length = 1092 Score = 87.5 bits (215), Expect = 6e-15, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG L + R + Q V + G V+ S KT +++G + G SKL + Sbjct: 328 LAGLTFVFTGVLDTLGREEGQALVKRYGGKVTTAPSGKTSFVVLGSDAGPSKLATISKHK 387 Query: 706 VKIMNEEQFLFLLQQ 720 +K ++EE L+++ Sbjct: 388 LKTISEEGLFELIRR 402 >gi|229175172|ref|ZP_04302688.1| DNA polymerase III subunit epsilon [Bacillus cereus MM3] gi|228608308|gb|EEK65614.1| DNA polymerase III subunit epsilon [Bacillus cereus MM3] Length = 280 Score = 87.5 bits (215), Expect = 7e-15, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 13/94 (13%) Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----- 692 E + K +VFTG L R +A + + G + +++ T+ II+GD Sbjct: 187 ATEVSEDHPFYQKHIVFTGKLNAYTRIEAAQLIANKGGIPQNGINKNTNYIIIGDFDNVM 246 Query: 693 ---NPGSKLEKAQQL-----GVKIMNEEQFLFLL 718 N SKLEKA++L ++I++EE+F+ +L Sbjct: 247 IKGNKSSKLEKAEKLIAQGKELEIISEEEFMRML 280 >gi|296422835|ref|XP_002840964.1| hypothetical protein [Tuber melanosporum Mel28] gi|295637191|emb|CAZ85155.1| unnamed protein product [Tuber melanosporum] Length = 1025 Score = 87.2 bits (214), Expect = 9e-15, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 3/101 (2%) Query: 621 NICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 N + V + G E V E + VFTG L+ + R Q+ V + G ++ Sbjct: 288 NYRDFKQRQGAVPIAPGSKEIPVGQENCLTGLTFVFTGILESLAREDGQQLVKKYGGKIT 347 Query: 679 AILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + S KT +++G + G KL +L +K +NE+ L+ Sbjct: 348 SAPSTKTSYVVLGSDAGPKKLATIHKLKIKTINEDGLFKLI 388 >gi|307690045|ref|ZP_07632491.1| BRCT domain-containing protein [Clostridium cellulovorans 743B] Length = 200 Score = 87.2 bits (214), Expect = 1e-14, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700 + ++ +E + + FTG R+ QE + GA +S ++ KT +++VG N GSKL+K Sbjct: 115 ISSTNILEGEVVCFTGQ-SDYPRNTMQEIAMKNGAEISNSITLKTTMLVVGLNSGSKLDK 173 Query: 701 AQQLGVKIMNEEQFLFLL 718 A + G+ I+++ +F+ +L Sbjct: 174 AHEKGISIIDDTEFMKML 191 >gi|149248210|ref|XP_001528492.1| activator 1 95 kDa subunit [Lodderomyces elongisporus NRRL YB-4239] gi|146448446|gb|EDK42834.1| activator 1 95 kDa subunit [Lodderomyces elongisporus NRRL YB-4239] Length = 709 Score = 86.8 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%) Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLF 716 + + R+ A+ + GA V+ +S+ T +++G + G SK++K ++LG K ++E+ FL Sbjct: 1 MPNLDRNYAESTAQRYGAKVTKSISKNTSFVVIGADAGWSKVDKIKKLGTKTIDEDGFLQ 60 Query: 717 LLQQ 720 LL++ Sbjct: 61 LLEK 64 >gi|308235755|ref|ZP_07666492.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14018] Length = 301 Score = 86.8 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 14/100 (14%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 + N+ +VFTG L+K+ R AQ+ V LG V+ ++++T+ +I+GDN Sbjct: 201 IKPDEVVVDKDGFFYNRHVVFTGKLEKMLRKDAQQIVVNLGGVLDNSVTKQTNYLILGDN 260 Query: 694 ---------PGSKLEKAQQLG-----VKIMNEEQFLFLLQ 719 SK +KA++L ++I++E F LL Sbjct: 261 DYNAILKGDKSSKHKKAEKLKIEGQDIEIIDEHTFYDLLN 300 >gi|281202783|gb|EFA76985.1| replication factor C subunit [Polysphondylium pallidum PN500] Length = 1512 Score = 86.8 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKI 708 K + +G L+ +R + ++ + + G VV +++K + + G G SKLEK ++ G+ I Sbjct: 631 KNYLISGALESFERDELKDIIERHGGVVVTTVTKKLNFFVEGFEAGVSKLEKVKKYGIPI 690 Query: 709 MNEEQFLFLLQQ 720 + E+ L + + Sbjct: 691 ITEDDVLDRINK 702 >gi|311114663|ref|YP_003985884.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019] gi|310946157|gb|ADP38861.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019] Length = 307 Score = 86.8 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 14/100 (14%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 + N+ +VFTG L+K+ R AQ+ V LG V+ ++++T+ +I+GDN Sbjct: 207 IKPDEVVVDKDGFFYNRHVVFTGKLEKMLRKDAQQIVVNLGGVLDNSVTKQTNYLILGDN 266 Query: 694 ---------PGSKLEKAQQLG-----VKIMNEEQFLFLLQ 719 SK +KA++L ++I++E F LL Sbjct: 267 DYNAILKGDKSSKHKKAEKLKIEGQDIEIIDEHTFYDLLN 306 >gi|83769742|dbj|BAE59877.1| unnamed protein product [Aspergillus oryzae] Length = 1054 Score = 86.8 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 + + VFTG L + R + Q V + G V+ S KT +++G + G Sbjct: 314 AEIPVGAENCLAGLSFVFTGVLDTLGREEGQNLVKKYGGKVTGAPSSKTSYVVLGGDAGP 373 Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQ 720 KL+ + +K +NEE L+++ Sbjct: 374 KKLKTIRDHNLKTINEEGLFELIRR 398 >gi|154301785|ref|XP_001551304.1| hypothetical protein BC1G_10044 [Botryotinia fuckeliana B05.10] gi|150855706|gb|EDN30898.1| hypothetical protein BC1G_10044 [Botryotinia fuckeliana B05.10] Length = 1054 Score = 86.8 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 + + + VFTG L I R + E V + G ++ S KT+ +++G + G Sbjct: 302 AEIPEGPENCLVGLTFVFTGMLDTISRDEGIELVKRYGGKITGAPSSKTNFVVLGKDAGP 361 Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718 SKL K L +K ++E LL Sbjct: 362 SKLRKIATLKIKTIDEHGIFHLL 384 >gi|71027899|ref|XP_763593.1| replication factor C large subunit [Theileria parva strain Muguga] gi|68350546|gb|EAN31310.1| replication factor C large subunit, putative [Theileria parva] Length = 1084 Score = 86.8 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 16/107 (14%) Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN----- 693 + +S IE KK VFTG + I R +A V +LG +V + +S TD ++ GD Sbjct: 367 ENEKSTSRIEGKKFVFTGEM-GIDRLEATLRVKKLGGIVVSAVSGVTDYLVYGDRLEDGR 425 Query: 694 ---PGSKLEKAQQL------GVKIMNEEQFLFLLQQYNTTLRIHDDD 731 G K +KA +L ++++NEEQFL LL Q N + D+ Sbjct: 426 PYQSGLKYKKAIELNNKKKRNIQLLNEEQFLQLL-QSNIDENVKTDN 471 >gi|317147094|ref|XP_001821879.2| replication factor C subunit 1 [Aspergillus oryzae RIB40] Length = 1056 Score = 86.4 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 + + VFTG L + R + Q V + G V+ S KT +++G + G Sbjct: 316 AEIPVGAENCLAGLSFVFTGVLDTLGREEGQNLVKKYGGKVTGAPSSKTSYVVLGGDAGP 375 Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQ 720 KL+ + +K +NEE L+++ Sbjct: 376 KKLKTIRDHNLKTINEEGLFELIRR 400 >gi|302873722|ref|YP_003842355.1| BRCT domain-containing protein [Clostridium cellulovorans 743B] gi|302576579|gb|ADL50591.1| BRCT domain protein [Clostridium cellulovorans 743B] Length = 271 Score = 86.4 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700 + ++ +E + + FTG R+ QE + GA +S ++ KT +++VG N GSKL+K Sbjct: 186 ISSTNILEGEVVCFTGQ-SDYPRNTMQEIAMKNGAEISNSITLKTTMLVVGLNSGSKLDK 244 Query: 701 AQQLGVKIMNEEQFLFLL 718 A + G+ I+++ +F+ +L Sbjct: 245 AHEKGISIIDDTEFMKML 262 >gi|238496567|ref|XP_002379519.1| DNA replication factor C subunit Rfc1, putative [Aspergillus flavus NRRL3357] gi|220694399|gb|EED50743.1| DNA replication factor C subunit Rfc1, putative [Aspergillus flavus NRRL3357] Length = 852 Score = 86.4 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695 + + VFTG L + R + Q V + G V+ S KT +++G + G Sbjct: 112 AEIPVGAENCLAGLSFVFTGVLDTLGREEGQNLVKKYGGKVTGAPSSKTSYVVLGGDAGP 171 Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQ 720 KL+ + +K +NEE L+++ Sbjct: 172 KKLKTIRDHNLKTINEEGLFELIRR 196 >gi|104774090|ref|YP_619070.1| putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423171|emb|CAI97964.1| Putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 261 Score = 86.0 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 2/101 (1%) Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 ++ L + + I K V S + ++ V TG ++ R++ + G V+ + Sbjct: 161 QKLLDGDLAKATEIIDFTPKQVDSRLAGQRFVITGQFRQATRYELTSLIQSHGGKVTGSV 220 Query: 682 SRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 S TD ++ G+ + K +KA + G ++ E + LLQ+ Sbjct: 221 SGVTDYLLKGELDHVTGKCKKAAEKGTAVIGYEDLMLLLQK 261 >gi|168179165|ref|ZP_02613829.1| BRCT domain protein [Clostridium botulinum NCTC 2916] gi|226950614|ref|YP_002805705.1| BRCT domain-containing protein [Clostridium botulinum A2 str. Kyoto] gi|182670000|gb|EDT81976.1| BRCT domain protein [Clostridium botulinum NCTC 2916] gi|226842284|gb|ACO84950.1| BRCT domain protein [Clostridium botulinum A2 str. Kyoto] Length = 242 Score = 85.6 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 62/262 (23%), Positives = 116/262 (44%), Gaps = 29/262 (11%) Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529 R+K V NI+ L + ++ FK+ + DIF L++ + I G Sbjct: 8 NRIKIMVGEKGINIKELNDETINILFKN----GLLNNAYDIFLLKKEELYK------IDG 57 Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 F V L SINK +N S E+FI++ I V + A +A +L++ + +I Sbjct: 58 FTKEYVDELIKSINKTKNCSFEKFIYACSIPKVTEKEAIVIAHTFLNFTDL------VID 111 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIE 648 NN+D L R+ + + I ++I RN + L V+P SI N+ Sbjct: 112 INNNDCDRLKRIDGMSEEIVESI------KRNKVLLVNLFMYVNPISIDEKNTNIKRY-- 163 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707 K TG L K +E + + +V +++ D ++ GD + K+ A++ + Sbjct: 164 --KFAITGVLNKDT-SYYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220 Query: 708 IMNEEQFLFLLQQYNTTLRIHD 729 +++E Q + +L++ ++ + Sbjct: 221 LISERQLVDILKEIKENNKMKN 242 >gi|23011878|ref|ZP_00052110.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Magnetospirillum magnetotacticum MS-1] Length = 295 Score = 85.6 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 95/224 (42%), Positives = 137/224 (61%), Gaps = 25/224 (11%) Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++NATLHNE Y++G+ A G+ +R G DIRVGD V+V RAG+VIPKV+D+++++R DA Sbjct: 1 MLSNATLHNEGYVQGVGADGEPIREGLDIRVGDTVIVVRAGDVIPKVMDVLLDKRPADAV 60 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 PF FP CP C S+ VR+LNP+T KL A RCTGGL C AQ +ERLKHFVSR+ F++EG Sbjct: 61 PFVFPETCPACGSKAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRNGFDLEGF 120 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRR---------------------QQTSTTKIE 525 G+ ++ F+ A ++ PAD+F L+ + + Sbjct: 121 GQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARREALSAQRRAEGEPAPKKPTK 176 Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569 D ++ NL S+ RR+I L RF+F+LGI +G A++ Sbjct: 177 KKGEEEDKAIKNLLASLEARRSIPLNRFLFALGIPQIGESTAKA 220 >gi|148986116|ref|ZP_01819102.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP3-BS71] gi|149004079|ref|ZP_01828884.1| exonuclease family protein [Streptococcus pneumoniae SP14-BS69] gi|147757891|gb|EDK64900.1| exonuclease family protein [Streptococcus pneumoniae SP14-BS69] gi|147921830|gb|EDK72957.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP3-BS71] gi|301799167|emb|CBW31680.1| unnamed protein product [Streptococcus pneumoniae OXC141] Length = 307 Score = 85.6 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 14/100 (14%) Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-- 692 + N FTG L+++ R +A + +G + +++ T+I++VG+ Sbjct: 208 EEEKAAMNPDHYFYGLYFCFTGKLERMTRKEANKAAALVGGIPEKGVTKHTNILVVGEQD 267 Query: 693 -------NPGSKLEKAQQL-----GVKIMNEEQFLFLLQQ 720 SK++KAQ L ++IM E F+ LL++ Sbjct: 268 WRVVGTDGLSSKMKKAQTLLEKGQDIEIMTENDFIRLLEE 307 >gi|123395219|ref|XP_001300705.1| differentiation specific element binding protein [Trichomonas vaginalis G3] gi|121881785|gb|EAX87775.1| differentiation specific element binding protein, putative [Trichomonas vaginalis G3] Length = 876 Score = 85.6 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 8/81 (9%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII-----VGDNPGSKLEKA 701 +E V TGT+ I R ++ + + G ++ +S KTD++I VG SKL +A Sbjct: 52 LEGITFVATGTMPSITRETLKDIIEKYGGRLTTSISGKTDVVIRGCIEVGP---SKLAQA 108 Query: 702 QQLGVKIMNEEQFLFLLQQYN 722 ++ G+ I++EE LQ N Sbjct: 109 RERGLLIIDEESLFQYLQSTN 129 >gi|188588313|ref|YP_001920971.1| DNA polymerase III subunit epsilon [Clostridium botulinum E3 str. Alaska E43] gi|188498594|gb|ACD51730.1| DNA polymerase III subunit epsilon [Clostridium botulinum E3 str. Alaska E43] Length = 309 Score = 85.2 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 14/84 (16%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSK 697 ++ +VFTG L + R +A V +LG V + +++KT ++ D +K Sbjct: 221 FTDEVVVFTGGLASMTRDEAIRLVRKLGGSVGSSVTKKTTYLVTNTKDIDNLHRDEMSTK 280 Query: 698 LEKAQQL-----GVKIMNEEQFLF 716 L KA L G+K +NE FL Sbjct: 281 LRKAVDLKNKGQGIKCLNEGAFLK 304 >gi|298252856|ref|ZP_06976650.1| NAD-dependent DNA ligase [Gardnerella vaginalis 5-1] gi|297533220|gb|EFH72104.1| NAD-dependent DNA ligase [Gardnerella vaginalis 5-1] Length = 196 Score = 85.2 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 14/100 (14%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 + N+ +VFTG L+K+ R A + V LG V+ ++++T+ +I+GDN Sbjct: 96 IKPDEVVVDKDGFFYNRHVVFTGKLEKMLRKDAMQIVVNLGGVLDNSVTKQTNYLILGDN 155 Query: 694 ---------PGSKLEKAQQLG-----VKIMNEEQFLFLLQ 719 SK +KA++L ++I++E F LL+ Sbjct: 156 DYNAILKDEKSSKHKKAEKLKLEGQDIEIIDERTFYDLLE 195 >gi|33861216|ref|NP_892777.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33639948|emb|CAE19118.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 249 Score = 85.2 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 59/307 (19%), Positives = 106/307 (34%), Gaps = 64/307 (20%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 LE+ + ++D Y + +I D ++D L++ I + Sbjct: 5 LEERLEWYDHNY-RIGNSLITDKQFDQLEKNLLRIDPDCDYFTNKKS------------- 50 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 +P SL+K + +F+ + +EPKIDG I ++Y Sbjct: 51 ---------LPLPSLKK----NSIDEFLEGLL--------PDTRLLIEPKIDGIAIALQY 89 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 G + R G DV+ I I IP L L + I+++RGE++ Sbjct: 90 RDGTLEKSISR----KGIDVTNKIAEIQDIP--LKLPVSGILQIRGELFTPNRSPNFSQR 143 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263 R +P + + +N QYE +Q ++ Sbjct: 144 IASGFVRAAAGSPEGISFCGFQIINGK---------------------LNQYETIQYLKK 182 Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE-RARSP 322 LGF ++ N + + + + Y DG+V K++ LQ + + P Sbjct: 183 LGF-NTPDIKSCNYTSQVQVFRKQWLDKKIFTEYPTDGIVVKINSRKLQLIREKSKIDYP 241 Query: 323 RWMISHK 329 W I+ K Sbjct: 242 HWQIAIK 248 >gi|15894025|ref|NP_347374.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum ATCC 824] gi|15023620|gb|AAK78714.1|AE007589_2 DNA polymerase III epsilon subunit (3'-5' exonuclease) containing BRCT domain [Clostridium acetobutylicum ATCC 824] Length = 306 Score = 85.2 bits (209), Expect = 4e-14, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 34/176 (19%) Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +L ++ I++ L ++ + + + + + + I + Sbjct: 150 ALACSNIMLSISKEL--KCKDITEISKLLGVTVGKVDSKGYKPSQTKGIAVRTSDRI--Y 205 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + + A E L E +N+ +VFTG L + R +A V +LG Sbjct: 206 FSKKK--SAFERLKA--------------DEFKNEVVVFTGRLDSMSRDEAMGLVRRLGG 249 Query: 676 VVSAILSRKTDIIIVG---------DNPGSKLEKAQQL-----GVKIMNEEQFLFL 717 + +++KT I++ + +KL++A L +K +NEE+FL + Sbjct: 250 TAGSSVTKKTTILVTNMKNIKNLRREEMSNKLKRASDLNARGQNIKFLNEEEFLKI 305 >gi|170755519|ref|YP_001782825.1| BRCT domain-containing protein [Clostridium botulinum B1 str. Okra] gi|169120731|gb|ACA44567.1| BRCT domain protein [Clostridium botulinum B1 str. Okra] Length = 242 Score = 84.8 bits (208), Expect = 5e-14, Method: Composition-based stats. Identities = 60/262 (22%), Positives = 117/262 (44%), Gaps = 29/262 (11%) Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529 R+K+ V NI+ L + ++ F++ + DIF L++ + I G Sbjct: 8 NRIKNMVGEKGINIKELNDETINILFEN----GFLNNAYDIFLLKKEELYK------IDG 57 Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 F V L SINK +N + E+FI++ I V + A +A +L++ + +I Sbjct: 58 FTKEYVDELIKSINKTKNCNFEKFIYACSIPKVTEKEAIVIAHTFLNFTDL------VID 111 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIE 648 NN+D L R+ + + I ++I RN + L V+P SI N+ Sbjct: 112 INNNDCDRLKRIDGMSEEIVESI------KRNKVLLVNLFMYVNPISIDEKNANIKRY-- 163 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707 K TG L K +E + + +V +++ D ++ GD + K+ A++ + Sbjct: 164 --KFSITGVLNKDT-SYYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220 Query: 708 IMNEEQFLFLLQQYNTTLRIHD 729 +++E Q + +L++ ++ + Sbjct: 221 LISERQLVDILKEIKENNKMKN 242 >gi|153938097|ref|YP_001392537.1| BRCT domain-containing protein [Clostridium botulinum F str. Langeland] gi|152933993|gb|ABS39491.1| BRCT domain protein [Clostridium botulinum F str. Langeland] gi|295320523|gb|ADG00901.1| BRCT domain protein [Clostridium botulinum F str. 230613] Length = 242 Score = 84.8 bits (208), Expect = 5e-14, Method: Composition-based stats. Identities = 62/262 (23%), Positives = 115/262 (43%), Gaps = 29/262 (11%) Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529 R+K V NI+ L + ++ FK+ + DIF L++ + I G Sbjct: 8 NRIKSMVGEKGINIKELNDETINILFKN----GLLNNAYDIFLLKKEELYK------IDG 57 Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 F V L SINK +N S E+FI++ I V + A +A +L+ + +I Sbjct: 58 FTKEYVDELIKSINKTKNCSFEKFIYACSIPKVTEKEAIVIAHTFLNLTDL------VID 111 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIE 648 NN+D L R+ + + I ++I RN + L V+P SI N+ Sbjct: 112 INNNDCDRLKRIDGMSEEIVESI------KRNKVLLVNLFMYVNPISIDEKNANIKRY-- 163 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707 K TG L K +E + + +V +++ D ++ GD + K+ A++ + Sbjct: 164 --KFSITGVLNKDT-SYYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220 Query: 708 IMNEEQFLFLLQQYNTTLRIHD 729 +++E Q + +L++ ++ + Sbjct: 221 LISERQLVDILKEIKENNKMKN 242 >gi|145640787|ref|ZP_01796370.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021] gi|145274713|gb|EDK14576.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.4-21] Length = 191 Score = 84.5 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 82/216 (37%), Positives = 126/216 (58%), Gaps = 27/216 (12%) Query: 339 LLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVG 398 + D++ Q+GRTG +TPVA+LEPV + G ++NATLHN D I+ L +I +G Sbjct: 1 MNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIERL-----------NIAIG 49 Query: 399 DRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458 D V+++RAG+VIP+++ ++ R +A+P FP+ CP+C S+++R A RC Sbjct: 50 DTVVIRRAGDVIPQIIGVLHERRPDNAKPIIFPTNCPVCDSQIIRIEGE------AVARC 103 Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518 TGGL C+AQ+ E LKHFVSR A +I+G+G + ++ E I PAD+F L Sbjct: 104 TGGLFCAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRE----LIHTPADLFKL----- 154 Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 T + + G S N +S+ ++ +L RFI Sbjct: 155 -DLTTLTRLERMGAKSAENALNSLENAKSTTLARFI 189 >gi|317503610|ref|ZP_07961630.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae DSM 15606] gi|315665271|gb|EFV04918.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae DSM 15606] Length = 284 Score = 84.5 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 7/98 (7%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 P +N + K++V TG L+ R + + GA ++ +S++TDI+IVG Sbjct: 186 PLSPEEVENKETPFFMKRVVLTGNLETFPARETIAKMLKAYGADINTSISKRTDIVIVGK 245 Query: 693 NPG-SKLEK-----AQQLGVKIMNEEQFLFLLQQYNTT 724 G SK++K AQ ++++ E + L +++++N Sbjct: 246 GAGPSKMQKIEELQAQGHNLRVIEEPELLSIMKEFNIE 283 >gi|260578055|ref|ZP_05845977.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC 43734] gi|258603795|gb|EEW17050.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC 43734] Length = 260 Score = 84.5 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 49/93 (52%), Gaps = 7/93 (7%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD- 692 E ++ I + + TG ++ + + + + G VV+ +++KT ++IVG+ Sbjct: 168 VPETNEEADIDGPIYGQTVCVTGDVEPYDKGEVWDMIASRGGVVAKNVTKKTTMLIVGEW 227 Query: 693 -NPGSKLEKAQQLG-----VKIMNEEQFLFLLQ 719 + SK ++A++L ++I+ ++FL L++ Sbjct: 228 HSMTSKEKRARELQDKGQELQIIGFQEFLQLIK 260 >gi|68535854|ref|YP_250559.1| hypothetical protein jk0779 [Corynebacterium jeikeium K411] gi|68263453|emb|CAI36941.1| hypothetical protein jk0779 [Corynebacterium jeikeium K411] Length = 260 Score = 84.5 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 49/93 (52%), Gaps = 7/93 (7%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD- 692 E ++ I + + TG ++ + + + + G VV+ +++KT ++IVG+ Sbjct: 168 VPETNEEADIDGPIYGQTVCVTGDVEPYDKGEVWDMIASRGGVVAKNVTKKTTMLIVGEW 227 Query: 693 -NPGSKLEKAQQLG-----VKIMNEEQFLFLLQ 719 + SK ++A++L ++I+ ++FL L++ Sbjct: 228 HSMTSKEKRARELQDKGQELQIIGFQEFLQLIK 260 >gi|116514157|ref|YP_813063.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093472|gb|ABJ58625.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 261 Score = 84.5 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 6/106 (5%) Query: 621 NICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 N + L L + + I K V S + ++ V TG ++ R++ + G Sbjct: 156 NNIVYQKLRDGDLAKATEIIDFTPKQVDSRLAGQRFVITGQFRQATRYELTSLIQSHGGK 215 Query: 677 VSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 V+ +S TD ++ G+ + K +KA + G ++ E + LLQ+ Sbjct: 216 VTGSVSGVTDYLLKGELDHVTGKCKKAAEKGTAVIGYEDLMLLLQK 261 >gi|147867164|emb|CAN82054.1| hypothetical protein VITISV_029381 [Vitis vinifera] Length = 783 Score = 84.5 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 39/84 (46%), Gaps = 6/84 (7%) Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-P 694 + S + V +GTL ++R +A++ + + G V+ + ++ ++ Sbjct: 186 EKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS-----NFLLCDEDIG 240 Query: 695 GSKLEKAQQLGVKIMNEEQFLFLL 718 G+K KA++LG + E+ ++ Sbjct: 241 GNKSAKAKELGTAFLTEDGLFDMI 264 >gi|325508152|gb|ADZ19788.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum EA 2018] Length = 317 Score = 84.5 bits (207), Expect = 7e-14, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 34/176 (19%) Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +L ++ I++ L ++ + + + + + + I + Sbjct: 161 ALACSNIMLSISKEL--KCKDITEISKLLGVTVGKVDSKGYKPSQTKGIAVRTSDRI--Y 216 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + + A E L E +N+ +VFTG L + R +A V +LG Sbjct: 217 FSKKK--SAFERLKA--------------DEFKNEVVVFTGRLDSMSRDEAMGLVRRLGG 260 Query: 676 VVSAILSRKTDIIIVG---------DNPGSKLEKAQQL-----GVKIMNEEQFLFL 717 + +++KT I++ + +KL++A L +K +NEE+FL + Sbjct: 261 TAGSSVTKKTTILVTNMKNIKNLRREEMSNKLKRASDLNARGQNIKFLNEEEFLKI 316 >gi|115383954|ref|XP_001208524.1| hypothetical protein ATEG_01159 [Aspergillus terreus NIH2624] gi|114196216|gb|EAU37916.1| hypothetical protein ATEG_01159 [Aspergillus terreus NIH2624] Length = 1053 Score = 84.5 bits (207), Expect = 7e-14, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG L + R + V Q G V S KT +++G + G SKL + Sbjct: 337 LAGLSFVFTGVLDTLGRDEGVSLVKQYGGRVVGTPSSKTSYVVLGHDAGPSKLRTIKDNN 396 Query: 706 VKIMNEEQFLFLLQQ 720 +K +NE+ L+++ Sbjct: 397 LKTINEQGLFELIRR 411 >gi|148381134|ref|YP_001255675.1| BRCT domain protein [Clostridium botulinum A str. ATCC 3502] gi|153933573|ref|YP_001385509.1| BRCT domain-containing protein [Clostridium botulinum A str. ATCC 19397] gi|153936307|ref|YP_001388915.1| BRCT domain-containing protein [Clostridium botulinum A str. Hall] gi|148290618|emb|CAL84747.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152929617|gb|ABS35117.1| BRCT domain protein [Clostridium botulinum A str. ATCC 19397] gi|152932221|gb|ABS37720.1| BRCT domain protein [Clostridium botulinum A str. Hall] Length = 242 Score = 84.1 bits (206), Expect = 7e-14, Method: Composition-based stats. Identities = 63/262 (24%), Positives = 116/262 (44%), Gaps = 29/262 (11%) Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529 R+K V NI+ L + ++ FK+ + DIF L++ + I G Sbjct: 8 NRIKSMVGEKGINIKELNDETINILFKN----GLLNNAYDIFLLKKEELYK------IDG 57 Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 F V L SINK +N S E+FI++ I V + A +A +L++ + +I Sbjct: 58 FTKEYVDELIKSINKTKNCSFEKFIYACSIPKVTEKEAIVIAHTFLNFTDL------VID 111 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIE 648 NN+D L R+ + + I ++I RN + L V+P SI N+ Sbjct: 112 INNNDCDRLKRIDGMSEEIVESI------KRNKVLLVNLFMYVNPISIDEKNTNIKRY-- 163 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707 K TG L K +E + + +V +++ D ++ GD + K+ A++ + Sbjct: 164 --KFSITGVLNKDT-SYYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220 Query: 708 IMNEEQFLFLLQQYNTTLRIHD 729 +++E Q + +L++ +I + Sbjct: 221 LISERQLVDILKEIKENNKIKN 242 >gi|219113609|ref|XP_002186388.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|209583238|gb|ACI65858.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 942 Score = 84.1 bits (206), Expect = 9e-14, Method: Composition-based stats. Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 9/105 (8%) Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 L +++ S +K + VF+G L + R QE V LG ++ +S T+ Sbjct: 182 LEPKLTQSSFNVDKAAPECLRGCTFVFSGVLPNLSREDGQEMVKTLGGRITGAVSSLTNY 241 Query: 688 IIVGDN--------PGSKLEKAQQLGVKIM-NEEQFLFLLQQYNT 723 ++VG+ GSK ++A Q G I+ EE F LLQQYN Sbjct: 242 LVVGEELEDGRVYTEGSKYKRAVQEGTHIVQGEEAFYGLLQQYND 286 >gi|325125846|gb|ADY85176.1| DNA polymerase III, epsilon subunit [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 286 Score = 83.7 bits (205), Expect = 9e-14, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 6/106 (5%) Query: 621 NICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 N + L L + + I K + S + ++ V TG ++ R++ + G Sbjct: 181 NNIVYQKLRDGDLAKATEIIDFTPKQIDSRLAGQRFVITGQFRQATRYELTSLIQSHGGK 240 Query: 677 VSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 V+ +S TD ++ G+ + K +KA + G ++ E + LLQ+ Sbjct: 241 VTGSVSGVTDYLLKGELDHVTGKCKKAAEKGTAVIGYEDLMLLLQK 286 >gi|294932355|ref|XP_002780231.1| replication factor C subunit, putative [Perkinsus marinus ATCC 50983] gi|239890153|gb|EER12026.1| replication factor C subunit, putative [Perkinsus marinus ATCC 50983] Length = 829 Score = 83.7 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 14/102 (13%) Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-- 692 K LVFTG L++++R A GA V+ +S +T ++VG Sbjct: 151 KSPPPAVTDEKPFNGKTLVFTGNLERLERDLAVTKAKLAGAKVTTAVSGRTTYLVVGSVL 210 Query: 693 ------NPGSKLEKAQQL------GVKIMNEEQFLFLLQQYN 722 GSK +K Q+L G ++ E +F+ LQ+ Sbjct: 211 EDGRPIEEGSKFKKTQELRAAGKPGPSLLQESEFIEKLQKAG 252 >gi|313124719|ref|YP_004034978.1| DNA polymerase iii polc-type [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312281282|gb|ADQ62001.1| DNA polymerase III PolC-type [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 298 Score = 82.9 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 50/106 (47%), Gaps = 14/106 (13%) Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 + + + + + + +VFTG L+++ R A + V LG ++ +++ T+ + Sbjct: 191 IDIGAITATTDDIDEDGFFYGRHVVFTGKLERMARKDAMQTVVNLGGILDNSVNKNTNYL 250 Query: 689 IVGDN---------PGSKLEKAQQLG-----VKIMNEEQFLFLLQQ 720 I+G+N SK +KA++L + I++E F ++ Sbjct: 251 ILGNNDYNAVLHGEKSSKHKKAEKLKLEGQDIDIIDEFTFYDIIND 296 >gi|187932792|ref|YP_001886212.1| DNA polymerase III subunit epsilon [Clostridium botulinum B str. Eklund 17B] gi|187720945|gb|ACD22166.1| DNA polymerase III subunit epsilon [Clostridium botulinum B str. Eklund 17B] Length = 309 Score = 82.9 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 14/84 (16%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSK 697 ++ +VFTG L + R +A V +L V + +++KT ++ D +K Sbjct: 221 FTDEVVVFTGGLASMTRDEAIRLVRKLNGSVGSSVTKKTTYLVTNTKNIDDLHRDEMSNK 280 Query: 698 LEKAQQL-----GVKIMNEEQFLF 716 L KA L G+K +NEE FL Sbjct: 281 LRKAVDLKDKGQGIKFLNEEAFLK 304 >gi|168494862|ref|ZP_02719005.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|168494874|ref|ZP_02719017.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|168495024|ref|ZP_02719167.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|183575147|gb|EDT95675.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|183575215|gb|EDT95743.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|183575301|gb|EDT95829.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] Length = 307 Score = 82.5 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 14/100 (14%) Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-- 692 + N FTG L+++ R +A + +G + +++ T+I++VG+ Sbjct: 208 EEEKAAMNPDHYFYGLYFCFTGKLERMTRKEANKATALVGGIPEKGVTKHTNILVVGEQD 267 Query: 693 -------NPGSKLEKAQQL-----GVKIMNEEQFLFLLQQ 720 SK++KAQ L ++IM E F+ LL++ Sbjct: 268 WRVVGTDGLSSKMKKAQTLLEKGQDIEIMTENDFIRLLEE 307 >gi|120599313|ref|YP_963887.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1] gi|120559406|gb|ABM25333.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1] Length = 298 Score = 82.5 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 15/89 (16%) Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---------NPG 695 E+ + +VFTG L + R +A E +LG + + +S+KTD ++VG+ Sbjct: 210 GELYGQTIVFTGELS-MTRAEAFEAAAELGLEIKSGVSKKTDYLVVGEQDESLVGPSGIS 268 Query: 696 SKLEKAQQL-----GVKIMNEEQFLFLLQ 719 SK KAQ L ++I++E++F+ L++ Sbjct: 269 SKQLKAQDLIDEGFDIQILDEDEFMELIE 297 >gi|168490120|ref|ZP_02714319.1| exonuclease family protein [Streptococcus pneumoniae SP195] gi|183571500|gb|EDT92028.1| exonuclease family protein [Streptococcus pneumoniae SP195] Length = 307 Score = 82.5 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 14/100 (14%) Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-- 692 + N FTG L+++ R +A + +G + +++ T+I++VG+ Sbjct: 208 EEEKAAMNPDHYFYGLYFCFTGKLERMTRKEANKATALVGGIPEKGVTKHTNILVVGEQD 267 Query: 693 -------NPGSKLEKAQQL-----GVKIMNEEQFLFLLQQ 720 SK++KAQ L ++IM E F+ LL++ Sbjct: 268 WRVVGTDGLSSKMKKAQTLLEKGQDIEIMTENDFIRLLEE 307 >gi|154416257|ref|XP_001581151.1| transcription factor [Trichomonas vaginalis G3] gi|121915376|gb|EAY20165.1| transcription factor, putative [Trichomonas vaginalis G3] Length = 687 Score = 82.5 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 44/78 (56%), Gaps = 2/78 (2%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQL 704 + V TGT+ ++R + ++ +T+ G V++ +S KTD ++VG + K++ ++ Sbjct: 50 LLGNTFVPTGTMVSLKREQVKDLITKYGGKVTSSISGKTDCVVVGCIEVGPKKIQTCREK 109 Query: 705 GVKIMNEEQFLFLLQQYN 722 + ++E+ +L+ + + Sbjct: 110 NIPTIDEDGLFYLIARSD 127 >gi|72042956|ref|XP_797949.1| PREDICTED: similar to replication factor C large subunit [Strongylocentrotus purpuratus] gi|115960148|ref|XP_001189165.1| PREDICTED: similar to replication factor C large subunit [Strongylocentrotus purpuratus] Length = 906 Score = 82.2 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-S 696 K + V TG ++ + + + V Q G ++ +S+KT +++G PG S Sbjct: 316 EEPKGADGCLSGLTFVLTGVIEYFDKDQIKTMVEQHGGRLTTSVSKKTSHLVIGREPGES 375 Query: 697 KLEK 700 K+ K Sbjct: 376 KVAK 379 >gi|145552994|ref|XP_001462172.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124430010|emb|CAK94799.1| unnamed protein product [Paramecium tetraurelia] Length = 972 Score = 82.2 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 11/111 (9%) Query: 618 NPRNICAVE-ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 +N ++ K++ KN ++ +V +G L R K ++++ GA Sbjct: 247 EKQNSKVLKPENKKQIEQEHQPEFKNDPDLLKGLTIVLSGLLNVCSRDKLEQFLKNNGAK 306 Query: 677 VSAILSRKTDIIIV---------GDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 V+ +S KT +IV G+ G+K ++A + G KI+ E + L Sbjct: 307 VTGSISGKTSYLIVADKLEDGRKGEE-GNKFKEATKKGTKIVRESELNDWL 356 >gi|282881940|ref|ZP_06290585.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B] gi|281298215|gb|EFA90666.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B] Length = 298 Score = 81.8 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 14/100 (14%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 E + + N+ +VFTG L+K+ R A + V LG ++ +++ T+ +I+G+N Sbjct: 198 IHPTEVEIDEDNFFFNRHVVFTGKLEKMIRQDAMQIVVNLGGILDNSVTKSTNYLILGNN 257 Query: 694 ---------PGSKLEKAQQLG-----VKIMNEEQFLFLLQ 719 SK +KA++L ++I++E F L++ Sbjct: 258 DYNAILKGEKSSKHKKAEKLKLEGQDIEIIDEFTFYDLIE 297 >gi|301111033|ref|XP_002904596.1| replication factor C subunit 1 [Phytophthora infestans T30-4] gi|262095913|gb|EEY53965.1| replication factor C subunit 1 [Phytophthora infestans T30-4] Length = 770 Score = 81.8 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 15/119 (12%) Query: 626 EALLKEVSPSIGRHE---KNVSSE----IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 + + EV P + E K V + ++ K F+G L+ + R A V G V+ Sbjct: 61 DEEMPEVKPEAKKEEGALKKVPAPCSGCLDGKTFAFSGVLESLSREDAVHLVKSCGGSVA 120 Query: 679 AILSRKTDIIIVGD------NP--GSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729 ++R T +++G N GSK ++A V+I+ + +F L+ + T + D Sbjct: 121 NSITRSTKYLVIGSTLEQGGNVTDGSKYKEAVAKNVRILTQNEFYNLITEAATAQQTQD 179 >gi|299142830|ref|ZP_07035958.1| exonuclease [Prevotella oris C735] gi|298575698|gb|EFI47576.1| exonuclease [Prevotella oris C735] Length = 284 Score = 81.8 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 7/98 (7%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 P +N + K++V TG L+ R E + GA ++ +S++TDI+IVG Sbjct: 186 PLSPEEVENKETPFFMKRVVLTGNLEMFPARETIAEVLKAYGADINTSISKRTDIVIVGK 245 Query: 693 NPG-SKLEK-----AQQLGVKIMNEEQFLFLLQQYNTT 724 G SK++K AQ ++++ E + L +++++N Sbjct: 246 GAGPSKMQKIEELQAQGHNLRVIEEPELLSIMKEFNIE 283 >gi|157413113|ref|YP_001483979.1| hypothetical protein P9215_07781 [Prochlorococcus marinus str. MIT 9215] gi|157387688|gb|ABV50393.1| Hypothetical protein P9215_07781 [Prochlorococcus marinus str. MIT 9215] Length = 249 Score = 81.8 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 59/308 (19%), Positives = 110/308 (35%), Gaps = 64/308 (20%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 LE+ I ++DD Y + +I D ++D L++ Sbjct: 5 LEERIEWYDDNYRNGNA-LISDKQFDQLEKNLLRTNPNCDYFK----------------- 46 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 K +P SLEK + + +F+ + +EPKIDG + ++Y Sbjct: 47 ---KKNKLVLP--SLEK----DSIDEFLKGLL--------VDTRLLIEPKIDGCAVALQY 89 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 G A R G D+++ + + IP L L +++VRGE+Y Sbjct: 90 RDGTLEKAISR----KGVDITSKLIKVQDIPNNLPL--RGVLQVRGELYAPN-------- 135 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263 + P + R A+ + + ++ + F + QYE + + Sbjct: 136 ------QSPNISQRIASGFLRAKEGFSERLSFCAFQILN-------STLNQYESKKNLSK 182 Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA-RSP 322 LGF + + N + + + + Y DG+V K++ LQ + P Sbjct: 183 LGFTIPQDI-SCNFTSQVEVFRKQWLEGKLFSKYPTDGIVVKINSRKLQLIREKSNLDYP 241 Query: 323 RWMISHKF 330 W ++ K Sbjct: 242 YWQVAIKR 249 >gi|157311015|ref|YP_001469010.1| gp012 [Lactococcus phage KSY1] gi|108861355|gb|ABG21554.1| gp012 [Lactococcus phage KSY1] Length = 471 Score = 81.8 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 65/470 (13%), Positives = 137/470 (29%), Gaps = 92/470 (19%) Query: 25 EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84 +E+ Y+ P++ D+ YD L F +L Sbjct: 4 VKELQEA----YEQGTPLMTDAAYDVLVGDN----EEFTELEDETYV------------- 42 Query: 85 SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144 + H++ + K N+++ + + K + +PK DG + E Sbjct: 43 ----IKHAVFMGTCPKTRNVKEF--------KLYCKGLLGTTNVVFQPKFDGVSGELIVE 90 Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204 GK + RG+G+ G+D+S + ++ E Sbjct: 91 HGKITAISSRGNGNFGQDLSDLKDILFNDVVIMPTVRAIYGEF----------------- 133 Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264 + P RN SG L + + +L+F + K + + M ++ Sbjct: 134 -VWRNDNPSQKDRNLVSGYLNK-KVHNKEPHLDFIAY---KAIDSNGRVMDFMQSQLYTT 188 Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 G ++ + R G ++ Sbjct: 189 GIKWSDCAILTDELEIPNFDGRYPDIKRD----------------------GTIIKNSVD 226 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384 + + K + T + + + ++ + A+LEPV IG +++ TL Sbjct: 227 IFALKPEPEAGITTITGVTWKKCKSK-FSATAQLEPVTIGAVNVSSVTLP---------- 275 Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444 D+ +GD+V++ R G+VIP + ++ + ++ P S C C Sbjct: 276 --LSYIKDMDLMIGDKVMISRRGDVIPCIEFLVEH--TEESSPIINDSKCEYCGGHFHLY 331 Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 + + K + + + Sbjct: 332 GKKLLCENENCVSYLVDYENKVLETMMSKVKGANTKWFMTEAKGNPGMIL 381 >gi|126696079|ref|YP_001090965.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9301] gi|126543122|gb|ABO17364.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9301] Length = 249 Score = 81.8 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 61/308 (19%), Positives = 108/308 (35%), Gaps = 64/308 (20%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 LE+ I ++DD Y + +I D ++D L++ Sbjct: 5 LEERIEWYDDNYRNGNA-LISDKQFDQLEKNLLRTNPNCDYFK----------------- 46 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 K +P SLEK + + +F+ + +EPKIDG + ++Y Sbjct: 47 ---KKNKLVLP--SLEK----DSIDEFLKGLL--------ADTRLLIEPKIDGCAVALQY 89 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 G A R G DV++ + I IP L L +++VRGE+Y Sbjct: 90 RDGTLEKAISR----KGTDVTSKLIKIQDIPNNLPL--QGVLQVRGELYAPN-------- 135 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263 + P + R A+ + + + + F + QYE + + Sbjct: 136 ------QSPNISQRIASGFLRAKEGFSQSLSFCAFQILN-------STLNQYESKKSLSK 182 Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA-RSP 322 LGF + + N + + + Y DG+V K++ LQ + P Sbjct: 183 LGFKIPQDI-SCNFTSQVEVFRKRWLEGKLFSEYPTDGIVVKINSRKLQLIREKSNLDYP 241 Query: 323 RWMISHKF 330 W ++ K Sbjct: 242 YWQVAIKR 249 >gi|19113399|ref|NP_596607.1| DNA replication factor C complex subunit Rfc1 [Schizosaccharomyces pombe 972h-] gi|30913227|sp|O60182|RFC1_SCHPO RecName: Full=Replication factor C subunit 1; Short=Replication factor C1 gi|3116125|emb|CAA18875.1| DNA replication factor C complex subunit Rfc1 [Schizosaccharomyces pombe] Length = 934 Score = 81.8 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + V TG L+ + R +A + + Q G V+ S +TD I++G+N G K+E +Q Sbjct: 241 LSGISFVITGILETLTRQEATDLIKQYGGKVTGAPSVRTDFILLGENAGPRKVETIKQHK 300 Query: 706 VKIMNEEQFLFLL 718 + +NE+ +L+ Sbjct: 301 IPAINEDGLFYLI 313 >gi|207109554|ref|ZP_03243716.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_CA4C1] Length = 87 Score = 81.4 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 3/73 (4%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE ++ YY PI+ D+ YD L + A P+ ++ N P Sbjct: 3 KSQKEYLERIAYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59 Query: 76 NKIGGEMNLSLFK 88 K+G S K Sbjct: 60 QKVGAITTNSFNK 72 >gi|254526990|ref|ZP_05139042.1| NAD-dependent DNA ligase N-terminal domain protein [Prochlorococcus marinus str. MIT 9202] gi|221538414|gb|EEE40867.1| NAD-dependent DNA ligase N-terminal domain protein [Prochlorococcus marinus str. MIT 9202] Length = 249 Score = 81.4 bits (199), Expect = 6e-13, Method: Composition-based stats. Identities = 61/308 (19%), Positives = 109/308 (35%), Gaps = 64/308 (20%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 LE+ I ++DD Y + +I D ++D L++ Sbjct: 5 LEERIEWYDDNYRNGNA-LISDKQFDQLEKNLLRTNPNCDYFK----------------- 46 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 K +P SLEK + + +F+ + +EPKIDG + ++Y Sbjct: 47 ---KKNKLVLP--SLEK----DSIDEFLKGLL--------VDTRLLIEPKIDGCAVALQY 89 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 G A R G DV+ + I IP L L +++VRGE+Y Sbjct: 90 RDGTLEKAISR----KGVDVTTKLIKIQDIPNNLPL--RGVLQVRGELYAPN-------- 135 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263 + P + R A+ + + ++ + F + QYE + + Sbjct: 136 ------QSPNISQRIASGFLRAKEGFSERLSFCAFQILN-------STLNQYESKKNLSK 182 Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA-RSP 322 LGF + + N + + + + Y DG+V K++ LQ + P Sbjct: 183 LGFTITQDI-SCNFTSQVDVFRKQWLEGKLFSKYPTDGIVVKINSRKLQLIREKSNLDYP 241 Query: 323 RWMISHKF 330 W ++ K Sbjct: 242 YWQVAIKR 249 >gi|126651945|ref|ZP_01724137.1| DNA polymerase III subunit epsilon [Bacillus sp. B14905] gi|126591214|gb|EAZ85323.1| DNA polymerase III subunit epsilon [Bacillus sp. B14905] Length = 132 Score = 81.4 bits (199), Expect = 6e-13, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 8/95 (8%) Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 + +++ +K++VFTG L + R +A + V G + ++++TD +I+G Sbjct: 30 LDIFFSDPTESLPHPFYHKQIVFTGALSTMTRSEAAKQVKACGGFLQGTVTQQTDFVILG 89 Query: 692 DN---PGSKLEKAQQL-----GVKIMNEEQFLFLL 718 D +K KA+QL ++I+ E+ FL+L+ Sbjct: 90 DKRRGISTKQRKAEQLMNYGEDIQILIEDDFLWLI 124 >gi|66395669|ref|YP_240034.1| ORF013 [Staphylococcus phage 47] gi|209363557|ref|YP_002267975.1| hypothetical protein phi2958PVL_gp05 [Staphylococcus phage phi2958PVL] gi|257428268|ref|ZP_05604666.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|282905892|ref|ZP_06313747.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282919259|ref|ZP_06326994.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus C427] gi|284024544|ref|ZP_06378942.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus 132] gi|62636093|gb|AAX91204.1| ORF013 [Staphylococcus phage 47] gi|208973058|dbj|BAG74374.1| hypothetical protein [Staphylococcus phage phi2958PVL] gi|257275109|gb|EEV06596.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|282317069|gb|EFB47443.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus C427] gi|282331184|gb|EFB60698.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Btn1260] Length = 306 Score = 81.4 bits (199), Expect = 6e-13, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 52/104 (50%), Gaps = 15/104 (14%) Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 K++ + + + K + FTG L+ R++ + VT +G+V + + + T+ ++ Sbjct: 193 KKIELVYNEELNDKNHILYGKHVCFTGALKGFTRNEIAQTVTNIGSVYDSSVKKSTNYLV 252 Query: 690 VG-----DNP-----GSKLEKAQQL-----GVKIMNEEQFLFLL 718 VG + SK++KA++L ++I++E FL LL Sbjct: 253 VGNLENLEKTHNYTKSSKIKKAEKLSSEGQDIEILSEMDFLKLL 296 >gi|169609112|ref|XP_001797975.1| hypothetical protein SNOG_07642 [Phaeosphaeria nodorum SN15] gi|160701784|gb|EAT85108.2| hypothetical protein SNOG_07642 [Phaeosphaeria nodorum SN15] Length = 1019 Score = 81.0 bits (198), Expect = 6e-13, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 11/74 (14%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + VFTG L+K R +AQE V + G V+ S+KT+ + K LG+ Sbjct: 356 LAGLNFVFTGVLKKWGRTEAQELVKRHGGKVTGAPSKKTNYV-----------KIHDLGI 404 Query: 707 KIMNEEQFLFLLQQ 720 + + E+ L+++ Sbjct: 405 QTIEEDGLSMLIEK 418 >gi|32477333|ref|NP_870327.1| DNA polymerase III subunit epsilon [Rhodopirellula baltica SH 1] gi|32447884|emb|CAD77402.1| probable DNA polymerase III polC-type [Rhodopirellula baltica SH 1] Length = 355 Score = 81.0 bits (198), Expect = 6e-13, Method: Composition-based stats. Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 17/89 (19%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQL-GAVVSAILSRKTDIIIVGD----------NP 694 +E +K+VFTG LQK+QR +A E +T G + +SRKTD+++VGD Sbjct: 265 PLEGRKVVFTGVLQKLQREEA-EMLTSRCGGKCQSSVSRKTDLVVVGDPDSRTVQASRTM 323 Query: 695 GSKLEKAQQL---G--VKIMNEEQFLFLL 718 K A+QL G ++IM E +FL ++ Sbjct: 324 SVKEATARQLAAEGAPLRIMTEHEFLEMI 352 >gi|118397505|ref|XP_001031085.1| BRCT domain containing protein [Tetrahymena thermophila] gi|89285407|gb|EAR83422.1| BRCT domain containing protein [Tetrahymena thermophila SB210] Length = 1123 Score = 81.0 bits (198), Expect = 7e-13, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 20/123 (16%) Query: 618 NPRNICAVEALLKEVSPSIGR------HEKNVSS------EIENKKLVFTGTLQKIQRHK 665 +N+ +E ++ S + +KN S+ + + +VFTG I R Sbjct: 294 EEKNLKKIEENKQKQQVSAKKDKAPPQKDKNSSNGNIDSDILAGQTIVFTGDFDGISRDT 353 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVG--------DNPGSKLEKAQQLGVKIMNEEQFLFL 717 + VT +GA + +S KT +++ G G K + A+Q G KIMN+ QF Sbjct: 354 MSKIVTDMGAKNTGSVSGKTTLLVHGSVLEDGRPPEQGKKYQTAKQKGTKIMNQSQFSDY 413 Query: 718 LQQ 720 L+ Sbjct: 414 LKD 416 >gi|123966480|ref|YP_001011561.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str. MIT 9515] gi|123200846|gb|ABM72454.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str. MIT 9515] Length = 251 Score = 81.0 bits (198), Expect = 7e-13, Method: Composition-based stats. Identities = 60/308 (19%), Positives = 112/308 (36%), Gaps = 62/308 (20%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 LE+ I ++D Y + P+I D ++D L+ ++ + N Sbjct: 5 LEERIEWYDHNY-RMGTPLISDVQFDQLEANLY--------------------RVNPKAN 43 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 K +P SL K + + +F+ + + +EPKIDG I I+Y Sbjct: 44 YFHKKSILPLP--SLPK----DKISEFLEGLL--------PNTRLIIEPKIDGCAIGIQY 89 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 G+ + A R G+DV+ I+ I +P + + +I+VRGE++ + Sbjct: 90 IDGQLIKAISR----KGDDVTNKIKEILDVPN--EIKVKGLIQVRGELFAPLENERPTYS 143 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263 + A G +N +L+F + ++ L ++ Sbjct: 144 QRKAGGYLRNEASKN---------------DHLSFCGFQIINGRLNE----HDSLVYLKK 184 Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS-P 322 LGF + + Y + + Y DG+V K++ LQ + P Sbjct: 185 LGF-TIPEYKSLKYLTQVEMYRKQWAEKKLFTQYPTDGIVVKLNSRKLQLIREKSVGCYP 243 Query: 323 RWMISHKF 330 W ++ F Sbjct: 244 YWQMAINF 251 >gi|70933831|ref|XP_738232.1| replication factor C subunit 1 [Plasmodium chabaudi chabaudi] gi|56514278|emb|CAH82044.1| replication factor C subunit 1, putative [Plasmodium chabaudi chabaudi] Length = 368 Score = 81.0 bits (198), Expect = 7e-13, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 14/79 (17%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSK 697 NKK V TG + R + Q + + G V + +S KT +I G+ + G K Sbjct: 122 PFINKKFVLTGVFKSFTRDELQSKIKEHGGSVMSAVSSKTHYLIHGEYLEDGRLYSEGKK 181 Query: 698 LEKAQQLG------VKIMN 710 +KA +L +KI+N Sbjct: 182 YQKAYELSKQPKTIIKILN 200 >gi|88596045|ref|ZP_01099282.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25] gi|88190886|gb|EAQ94858.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25] gi|315058737|gb|ADT73066.1| Exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni S3] gi|315927070|gb|EFV06421.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 326 Score = 81.0 bits (198), Expect = 7e-13, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 14/103 (13%) Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 K E ++S + N+ V TG L + R +A + + LG + +++KT+I+I Sbjct: 223 KAKDIQAKIQEFDISHPLYNQNCVITGILGRFTRSQAMQIIADLGGINQDSVTKKTNILI 282 Query: 690 VGDN---------PGSKLEKAQQL-----GVKIMNEEQFLFLL 718 +GDN +KL++A++L +KI++E F ++ Sbjct: 283 LGDNDYRAMIKGGISNKLKRARELILKGQDLKIISENVFYDMI 325 >gi|315050906|ref|XP_003174827.1| hypothetical protein MGYG_02357 [Arthroderma gypseum CBS 118893] gi|311340142|gb|EFQ99344.1| hypothetical protein MGYG_02357 [Arthroderma gypseum CBS 118893] Length = 1055 Score = 80.6 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 1/96 (1%) Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 + + + + VFTG L + R + Q V + G + S KT Sbjct: 292 QRAQSNGTIDDADLPVGEPNCLAGLSFVFTGVLDSLGREQGQNLVKKFGGKSMSAPSSKT 351 Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 +++G++ G KLE Q+ +K +NEE L+++ Sbjct: 352 SYVVLGNDAGPKKLETIQKYKLKTINEEGLFELIRK 387 >gi|225018549|ref|ZP_03707741.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum DSM 5476] gi|224948681|gb|EEG29890.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum DSM 5476] Length = 319 Score = 80.6 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 14/104 (13%) Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 LK E + + + NK VFTG L+K+ R +A + V G L++KT+ + Sbjct: 210 LKACDILPECDEFDEAHPLFNKVCVFTGALEKMTRSEAMQAVVNFGGTCKDNLTKKTNFL 269 Query: 689 IVGDNP---------GSKLEKAQQLG-----VKIMNEEQFLFLL 718 I+G+N +K +KA+ ++I++E F ++ Sbjct: 270 ILGNNSYCSTLKDGKSTKQKKAESYKLTGADIEIISENVFYDMI 313 >gi|85001193|ref|XP_955315.1| replication factor c-related protein [Theileria annulata strain Ankara] gi|65303461|emb|CAI75839.1| replication factor c-related protein, putative [Theileria annulata] Length = 961 Score = 80.6 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 15/93 (16%) Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN------- 693 ++ IE KK VFTG + I R +A V +LG +V + +S T+ ++ G+ Sbjct: 341 ESSVGGIEGKKFVFTGEMS-IDRLEATFRVKKLGGIVVSAVSGVTNYLVYGEKLEDGRPY 399 Query: 694 -PGSKLEKA------QQLGVKIMNEEQFLFLLQ 719 G K +KA + L ++++NE+QFL LLQ Sbjct: 400 QSGVKYKKALELNSKKNLNIQLLNEQQFLQLLQ 432 >gi|167519801|ref|XP_001744240.1| hypothetical protein [Monosiga brevicollis MX1] gi|163777326|gb|EDQ90943.1| predicted protein [Monosiga brevicollis MX1] Length = 613 Score = 80.6 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 6/93 (6%) Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 K G+ + + + +VFTGT R + + G V +S TD+++ Sbjct: 239 KSAKVQPGQKKATSTKSL---TVVFTGTFTGGTRKEIEAQAVAAGHHVVGKVSGNTDVLV 295 Query: 690 VG--DNP-GSKLEKAQQLGVKIMNEEQFLFLLQ 719 VG NP G+K++ AQ GVK+++E Q+ L Sbjct: 296 VGGAKNPQGAKVDDAQAKGVKVLSEPQWAMRLN 328 Score = 74.8 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%) Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNP-GSKLEKAQQLGV 706 + +VFTGT + R + +E G V +S K D+++VG +P G+K A G+ Sbjct: 12 QTVVFTGTFEGGNRKEVEEAARANGFRVVGKISDKVDLLVVGGVQDPHGAKWADASSRGI 71 Query: 707 KIMNEEQFLF 716 I++E+ + Sbjct: 72 TILSEDAWRA 81 Score = 63.3 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 4/84 (4%) Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNP-GSKLEKAQQLGVK 707 +VFTGT +R + + G V++ +S T +++VG +P G+K++ A + G Sbjct: 147 NVVFTGTFAGGKRQVIENQAREAGYQVASKVSGNTHVLVVGGVKDPQGAKVDDAHRHGAL 206 Query: 708 IMNEEQFLFLL-QQYNTTLRIHDD 730 ++ E Q+ ++ + N + D Sbjct: 207 VVTEPQWEEMVRNKANDPAKPAKD 230 >gi|330447729|ref|ZP_08311377.1| DNA ligase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491920|dbj|GAA05874.1| DNA ligase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 187 Score = 80.6 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 8/93 (8%) Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 + ++ L +E + + N ++ TGTL + R + + + GA+V + Sbjct: 98 LKDIDELQREFATIDEVLNTLS---LTNLRVAVTGTLP-LPRAEFKSLLESKGAIVVGSV 153 Query: 682 SRKTDIIIVGD----NPGSKLEKAQQLGVKIMN 710 S KT + +GD SK+ KA +GVKI+ Sbjct: 154 SNKTSFLFMGDTGKYEITSKMAKAHAVGVKIIT 186 >gi|258565361|ref|XP_002583425.1| hypothetical protein UREG_06392 [Uncinocarpus reesii 1704] gi|237907126|gb|EEP81527.1| hypothetical protein UREG_06392 [Uncinocarpus reesii 1704] Length = 729 Score = 80.6 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG L + R + Q V + G V+ S KT +++G + G KLE ++ G Sbjct: 26 LAELSFVFTGVLDALGREEGQALVKRYGGKVTTAPSSKTSYVVLGGDAGPKKLETIRKHG 85 Query: 706 VKIMNEEQFLFLLQQ 720 +K ++E L+++ Sbjct: 86 LKTIDEHGLFELIRK 100 >gi|170758900|ref|YP_001785582.1| DNA polymerase III subunit epsilon [Clostridium botulinum A3 str. Loch Maree] gi|169405889|gb|ACA54300.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum A3 str. Loch Maree] Length = 309 Score = 80.6 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 28/119 (23%) Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + N +E + + + E +VFTG L + R +A V +L Sbjct: 205 ASKENKKIIENF----NFTAFKEEV----------VVFTGRLASMTRDEAIILVRKLNGT 250 Query: 677 VSAILSRKTDIIIVG---------DNPGSKLEKAQQL-----GVKIMNEEQFLFLLQQY 721 V + ++++T ++ + +KL+KA L +K +NEE FL ++ Sbjct: 251 VGSSVTKRTTYLVTNTNDIEDLNREEMSNKLKKATDLRKKGQNIKFLNEEAFLQKCKEK 309 >gi|118139511|ref|YP_390933.2| NAD-dependent DNA ligase [Thiomicrospira crunogena XCL-2] gi|110744162|gb|ABB41259.2| DNA ligase [Thiomicrospira crunogena XCL-2] Length = 312 Score = 80.2 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 14/85 (16%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GS 696 E + K TG L R + Q+ + + G VS +++K D ++VG G Sbjct: 226 EFDGKVFCITGALAYGTRKECQDLILKFGGKVSKGITKKLDYLVVGPVASRDWFNTSYGR 285 Query: 697 KLEKA-----QQLGVKIMNEEQFLF 716 K+EKA + G+KI++EE + Sbjct: 286 KIEKAVGYRDEGYGLKIISEEVWRK 310 >gi|327537942|gb|EGF24639.1| DNA polymerase III subunit epsilon [Rhodopirellula baltica WH47] Length = 355 Score = 79.8 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 17/89 (19%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQL-GAVVSAILSRKTDIIIVGD----------NP 694 +E +K+VFTG LQK+QR +A E +T G + +SRKTD+++VGD Sbjct: 265 PLEGRKVVFTGVLQKLQREEA-EMLTSRCGGKCQSNVSRKTDLVVVGDPDSRTVQASRTM 323 Query: 695 GSKLEKAQQL---G--VKIMNEEQFLFLL 718 K A+QL G +KIM E +FL ++ Sbjct: 324 SVKEATARQLAAEGAPLKIMTEHEFLEMI 352 >gi|224372066|ref|YP_002606231.1| predicted type III DNA polymerase PolC [Desulfobacterium autotrophicum HRM2] gi|223694785|gb|ACN18067.1| predicted type III DNA polymerase PolC [Desulfobacterium autotrophicum HRM2] Length = 290 Score = 79.8 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 15/94 (15%) Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD------- 692 E N E+ + +VFTG L I R A +G V+ +S+K D ++VGD Sbjct: 192 EGNPEGELYGQSVVFTGALS-IPRKDAAAMAASIGCSVAPTVSKKIDYLVVGDQDASRLA 250 Query: 693 --NPGSKLEKAQQL-----GVKIMNEEQFLFLLQ 719 + SK KA++L ++I+ E F L+ Sbjct: 251 GKDKSSKHIKAEKLIASGVQIRILKESDFKELVD 284 >gi|319654072|ref|ZP_08008164.1| hypothetical protein HMPREF1013_04784 [Bacillus sp. 2_A_57_CT2] gi|317394265|gb|EFV75011.1| hypothetical protein HMPREF1013_04784 [Bacillus sp. 2_A_57_CT2] Length = 91 Score = 79.5 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 13/87 (14%) Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-DNP-------GS 696 ++ + VF+G + + R +A + V G + +++ T ++VG +NP + Sbjct: 4 HPLKGEVFVFSGKMHTLLRKEAIKEVLIRGGICEENVTKNTTYLVVGIENPEAIKRNVST 63 Query: 697 KLEKAQQLG-----VKIMNEEQFLFLL 718 KL KA++ +KI+NEE+FL LL Sbjct: 64 KLGKAEEYNAAGISIKIINEEEFLNLL 90 >gi|163840229|ref|YP_001624634.1| DNA polymerase III alpha subunit [Renibacterium salmoninarum ATCC 33209] gi|162953705|gb|ABY23220.1| DNA polymerase III alpha subunit [Renibacterium salmoninarum ATCC 33209] Length = 327 Score = 79.1 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 55/109 (50%), Gaps = 21/109 (19%) Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 +E + + + + + +VFTG L +I R A+ +LGA ++ ++R+T +++ Sbjct: 219 EEGANPAANTAADANHPLFGQTVVFTGNL-QIPRGNAKVKAAELGAQPASSVTRRTTVLV 277 Query: 690 VGDN-----------PGSKLE-KAQ---QL-----GVKIMNEEQFLFLL 718 VGD GS+L KA+ +L +++++E +F+ ++ Sbjct: 278 VGDGFIAADLRRGETKGSRLTAKAKRVLELHGKGQQIEVLSEGEFMQMI 326 >gi|163735140|ref|ZP_02142576.1| Exonuclease [Roseobacter litoralis Och 149] gi|161391598|gb|EDQ15931.1| Exonuclease [Roseobacter litoralis Och 149] Length = 287 Score = 79.1 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 15/92 (16%) Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-----PG- 695 N + + +VFTG L+ I R +A + +G V A +++KT +++VGD G Sbjct: 193 NPDGALAGEVVVFTGALE-IPRREAADLAASIGCSVGASVTKKTTLLVVGDTDVARLAGH 251 Query: 696 ---SKLEKAQQL---GVK--IMNEEQFLFLLQ 719 SK KA+ L GV I+ E F L++ Sbjct: 252 AKSSKHRKAEDLAAKGVPIRIIRETDFRELVE 283 >gi|123968278|ref|YP_001009136.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str. AS9601] gi|123198388|gb|ABM70029.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str. AS9601] Length = 249 Score = 79.1 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 56/308 (18%), Positives = 97/308 (31%), Gaps = 64/308 (20%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 LE+ I ++DD Y + +I D ++D L++ Sbjct: 5 LEERIEWYDDNYRNGNA-LISDKQFDQLEKNLLRTNPNCDYFK----------------- 46 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 K+ SLEK + + +F+ + +EPKIDG + ++Y Sbjct: 47 -KKNKIVLP----SLEK----DSIDEFLKGLL--------VDTRLLIEPKIDGCAVALQY 89 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 G A R G DV++ + + IP L L +++VRGE+Y Sbjct: 90 RDGTLEKAISR----KGADVTSKLIKVQDIPNNLPL--RGVLQVRGELYAPNQSPNISQK 143 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263 R + + + LN T + LG T Sbjct: 144 IASGFLRAKEGFSESLSFCAFQILNSTLNQYESKKSLSKLGFTIPQDIS----------- 192 Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA-RSP 322 N + + + + Y DG+V K++ LQ + P Sbjct: 193 -----------CNFTSQVEVFRKQWLEGKLFSKYPTDGIVVKINSRKLQLIREKSNLDYP 241 Query: 323 RWMISHKF 330 W ++ K Sbjct: 242 YWQVAIKR 249 >gi|333030386|ref|ZP_08458447.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis DSM 18011] gi|332740983|gb|EGJ71465.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis DSM 18011] Length = 279 Score = 79.1 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 53/96 (55%), Gaps = 7/96 (7%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + N + N+K+V TGT Q+ R + E + QLGA ++ +S +T+ ++ G+ Sbjct: 184 VLKQDLSQANPQNPFYNQKVVITGTFQR-DRMELAEQIQQLGAKINTSISSRTNFVLKGE 242 Query: 693 NPG-SKLEKAQQL---GVKI--MNEEQFLFLLQQYN 722 G +KL++ +L GV I + EE+ + +L+++ Sbjct: 243 KAGPAKLKRIHELQSQGVPIQVVEEEKLMKVLEKWG 278 >gi|91081967|ref|XP_967820.1| PREDICTED: similar to replication factor C large subunit, putative [Tribolium castaneum] gi|270007366|gb|EFA03814.1| hypothetical protein TcasGA2_TC013927 [Tribolium castaneum] Length = 985 Score = 79.1 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQ 713 TG L + + + Q G V +S+K + ++VG PG +KL KA+ + ++E++ Sbjct: 260 TGVLDSLDSEEFANIIKQHGGRVVHAVSKKVNYVVVGAEPGPAKLAKAESYNIPNISEDE 319 Query: 714 FLFLL 718 L ++ Sbjct: 320 LLDMI 324 >gi|153213490|ref|ZP_01948801.1| DNA ligase [Vibrio cholerae 1587] gi|124115954|gb|EAY34774.1| DNA ligase [Vibrio cholerae 1587] Length = 124 Score = 78.7 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 10/111 (9%) Query: 608 IAQAIVEFYQNPRNICAVEA--LLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRH 664 +AQ I +F+ + L+++ + + + +++N K+ TGTL + R Sbjct: 15 VAQRIEDFHSGKNKQKEAQRNIKLEDIEREFASISEVLDTIKLDNLKVAITGTLP-LPRA 73 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-----KLEKAQQLGVKIMN 710 A+ + GA+V ++++T + +G N G K++KA LGVKI+ Sbjct: 74 DARALLESKGAIVVGSVNKQTSFLFMG-NTGRYEITEKMKKAHSLGVKIIT 123 >gi|168182135|ref|ZP_02616799.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum Bf] gi|237793573|ref|YP_002861125.1| DNA polymerase III subunit epsilon [Clostridium botulinum Ba4 str. 657] gi|182674639|gb|EDT86600.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum Bf] gi|229262587|gb|ACQ53620.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum Ba4 str. 657] Length = 309 Score = 78.7 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 14/84 (16%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702 +VFTG L + R++A V +L V + +++KT ++ + +KL+KA Sbjct: 226 VVFTGGLASMTRNEAMILVGKLNGTVGSSVTKKTTCLVTNTKDIEDLNREEMSNKLKKAI 285 Query: 703 QL-----GVKIMNEEQFLFLLQQY 721 L +K++NEE FL ++ Sbjct: 286 DLKKKGQNIKVLNEEAFLQKCKEK 309 >gi|331082129|ref|ZP_08331257.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium 6_1_63FAA] gi|330405724|gb|EGG85254.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium 6_1_63FAA] Length = 405 Score = 78.7 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 15/92 (16%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSK 697 I + V TG + + + +Y+ G V++ +S T+ +IVG P GSK Sbjct: 314 ITGMRFVLTGIFTLMPKDEIVDYIETNGGKVTSAVSGVTNYLIVGSEPEPAWKHGNYGSK 373 Query: 698 LEKAQQL------GVKIMNEEQFLFLLQQYNT 723 +EKA L + + EE F+ N+ Sbjct: 374 IEKALSLISENNKHILFIKEEDFISFFASENS 405 >gi|254431865|ref|ZP_05045568.1| DNA ligase [Cyanobium sp. PCC 7001] gi|197626318|gb|EDY38877.1| DNA ligase [Cyanobium sp. PCC 7001] Length = 41 Score = 78.7 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 25/38 (65%) Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 S+KT ++ G+ GSKL KA+ LGV +++E L LL Sbjct: 2 SKKTSYVVAGEEAGSKLTKAESLGVAVLDEAGLLALLD 39 >gi|320179985|gb|EFW54927.1| DNA ligase , LigB [Shigella boydii ATCC 9905] Length = 140 Score = 78.7 bits (192), Expect = 4e-12, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 23/156 (14%) Query: 43 ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102 + D YD L R F + V H + + K+ Sbjct: 1 MEDGVYDQLSARLTQWQRCF---------GNETRDVMMPPLNG--AVMHPVAHTGVRKMA 49 Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162 + L ++ W ++PK+DG +T+ Y GK A RG+G GED Sbjct: 50 DKNALSLWMREHSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98 Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + +R I +P+ +S ++GE+++ + Sbjct: 99 WTQKVRLISAVPQTVSGP-LANSTLQGEIFLKREGH 133 >gi|172040860|ref|YP_001800574.1| hypothetical protein cur_1180 [Corynebacterium urealyticum DSM 7109] gi|171852164|emb|CAQ05140.1| hypothetical protein cu1180 [Corynebacterium urealyticum DSM 7109] Length = 258 Score = 78.7 bits (192), Expect = 4e-12, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 7/92 (7%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 E +V + + +V TG ++ + + + GA+V+ +++KT ++IVG+ Sbjct: 163 VPEQNTEADVDGPVFGETVVITGDVEPYSKGEVWNMLADAGAIVAKNVTKKTTLLIVGEW 222 Query: 694 P--GSKLEKAQQLG-----VKIMNEEQFLFLL 718 SK ++A++L + I E+ L L Sbjct: 223 ATVTSKEKRARELQEQGQELAIWTFEELLQKL 254 >gi|325289205|ref|YP_004265386.1| DNA polymerase III, epsilon subunit [Syntrophobotulus glycolicus DSM 8271] gi|324964606|gb|ADY55385.1| DNA polymerase III, epsilon subunit [Syntrophobotulus glycolicus DSM 8271] Length = 410 Score = 78.3 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 15/118 (12%) Query: 616 YQNPRNICAVEAL-LKEVSPSIGRHEKNVSSE------IENKKLVFTGTLQKI------Q 662 Q+ RN+ + + +E++ I + N S+ + K + FTGTLQ + Sbjct: 288 LQDLRNVACILDIDQEELNQMIITGKTNTSTREFYKKDCKGKSVCFTGTLQTMKEGRPLT 347 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A + G ++ + +++ D ++ D+ K +KA+Q V IM E+ F +L Sbjct: 348 REEAHALALEYGLIIKSGVTKDLDFLVAADSDSMSGKAKKARQYNVNIMAEQAFWNML 405 >gi|326427870|gb|EGD73440.1| DNA ligase [Salpingoeca sp. ATCC 50818] Length = 664 Score = 78.3 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 51/84 (60%), Gaps = 3/84 (3%) Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---DNP 694 + +S I + K+VFTGT + R + ++LGA+V + +S KTD++++G Sbjct: 154 KTSAATASSIRDLKVVFTGTFESGIRRVVENEASKLGAIVGSSVSSKTDLLVIGGLVRPF 213 Query: 695 GSKLEKAQQLGVKIMNEEQFLFLL 718 G+K ++A LGV+++ E+++ ++ Sbjct: 214 GAKEDRASDLGVRVIFEKEWNDMV 237 >gi|302657732|ref|XP_003020581.1| hypothetical protein TRV_05323 [Trichophyton verrucosum HKI 0517] gi|291184429|gb|EFE39963.1| hypothetical protein TRV_05323 [Trichophyton verrucosum HKI 0517] Length = 1069 Score = 78.3 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 10/150 (6%) Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLV---GDIIAQAIVEFYQNPRNICAVEALLKE 631 S + + + L +P V A F + A + Sbjct: 257 KSTPKKPRATKADQPESKEIQDILNSIPEVKAPSPPTATKKFNF------VAAAQRAQSG 310 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 + + + VFTG L + R + Q V + G + S KT +++G Sbjct: 311 GTIDDSDLPVGEPNCLAGLSFVFTGVLDSLGREQGQNLVKKYGGKCMSAPSSKTSYVVLG 370 Query: 692 DNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ G KLE Q+ +K +NE L+++ Sbjct: 371 NDAGPKKLETIQKYKLKTINEGGLFELIRK 400 >gi|296812349|ref|XP_002846512.1| replication factor C subunit 1 [Arthroderma otae CBS 113480] gi|238841768|gb|EEQ31430.1| replication factor C subunit 1 [Arthroderma otae CBS 113480] Length = 1056 Score = 77.9 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + VFTG L + R + Q V + G S KT +++G++ G KLE ++ Sbjct: 316 LAGLSFVFTGVLDSLGREQGQNLVKKYGGKSMTAPSSKTSYVVLGNDAGPKKLETIKKYK 375 Query: 706 VKIMNEEQFLFLLQQ 720 +K +NEE L+++ Sbjct: 376 LKTINEEGLFELIRK 390 >gi|257791384|ref|YP_003181990.1| Exonuclease RNase T and DNA polymerase III [Eggerthella lenta DSM 2243] gi|257475281|gb|ACV55601.1| Exonuclease RNase T and DNA polymerase III [Eggerthella lenta DSM 2243] Length = 367 Score = 77.9 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 19/133 (14%) Query: 596 LSLIRVPLVGDIIA---QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652 L P + I+A AI + + + + L+ + E +V N+K Sbjct: 230 EELTSDPALSPIVALLQNAIADGWVDEAESNELANLISHIVNPSSSIEDSVD--FANRKF 287 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII---VGDNP------GSKLEKA-- 701 V TG+ + ++ + G V +++ D ++ G G K++KA Sbjct: 288 VLTGSFNHGTKDDVSAFIQERGGEVLQNVTKTCDYVVIGGCGSEAYSLGSYGGKVKKALD 347 Query: 702 -QQLGVK--IMNE 711 Q GV ++ E Sbjct: 348 WQAKGVPMQVIEE 360 >gi|308160758|gb|EFO63231.1| Replication factor C, subunit 1 [Giardia lamblia P15] Length = 887 Score = 77.9 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQ 703 S + V TG L+ + + YVT LG V+ +S +T ++VGD+PG +K+ A+ Sbjct: 175 SSLSKLIFVRTGNLRTMSDTDFKLYVTNLGGTVTTAVSGRTSYLVVGDDPGATKIRDAKA 234 Query: 704 LGVKIMNEEQFLFLL 718 V+I++E++F L+ Sbjct: 235 KFVRIISEKEFYNLV 249 >gi|218245952|ref|YP_002371323.1| BRCT domain-containing protein [Cyanothece sp. PCC 8801] gi|218166430|gb|ACK65167.1| BRCT domain protein [Cyanothece sp. PCC 8801] Length = 600 Score = 77.9 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 24/110 (21%) Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL------------GAV 676 + EV+P + + + KK+V G+L ++ R +A+ Y+ + Sbjct: 503 IAEVTPEESQESSAKENPLSGKKVVIAGSLSQMTREEARGYLQKAGGSLTSSLSSKT--- 559 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 I++G+ PG K++KA +LGV + E QF+ LL+ N ++ Sbjct: 560 ---------HYIVIGNAPGDKVKKAHKLGVTQLTETQFMDLLKSANISIS 600 >gi|326469755|gb|EGD93764.1| replication factor C protein [Trichophyton tonsurans CBS 112818] gi|326485097|gb|EGE09107.1| replication factor C subunit 1 [Trichophyton equinum CBS 127.97] Length = 1060 Score = 77.9 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 10/150 (6%) Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLV---GDIIAQAIVEFYQNPRNICAVEALLKE 631 S + + + L +P V A F + A + Sbjct: 249 KSTPKKPRATKADQPESKEIQDILNSIPEVKAPSPPTATKKFNF------VAAAQRAQSS 302 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 + + + VFTG L + R + Q V + G + S KT +++G Sbjct: 303 GTIDDSDLPVGEPNCLAGLSFVFTGVLDSLGREQGQNLVKKYGGKCMSAPSSKTSYVVLG 362 Query: 692 DNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ G KLE Q+ +K +NE L+++ Sbjct: 363 NDAGPKKLETIQKYKLKTINEGGLFELIRK 392 >gi|302509032|ref|XP_003016476.1| hypothetical protein ARB_04765 [Arthroderma benhamiae CBS 112371] gi|291180046|gb|EFE35831.1| hypothetical protein ARB_04765 [Arthroderma benhamiae CBS 112371] Length = 1073 Score = 77.9 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 10/150 (6%) Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLV---GDIIAQAIVEFYQNPRNICAVEALLKE 631 S + + + L +P V A F + A + Sbjct: 258 KSTPKKPRATKADQPESKEIQDILNSIPEVKAPSPPTATKKFNF------VAAAQRAQSS 311 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 + + + VFTG L + R + Q V + G + S KT +++G Sbjct: 312 GTIDDSDLPVGEPNCLAGLSFVFTGVLDSLGREQGQNLVKKYGGKCMSAPSSKTSYVVLG 371 Query: 692 DNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ G KLE Q+ +K +NE L+++ Sbjct: 372 NDAGPKKLETIQKYKLKTINEGGLFELIRK 401 >gi|255074155|ref|XP_002500752.1| predicted protein [Micromonas sp. RCC299] gi|226516015|gb|ACO62010.1| predicted protein [Micromonas sp. RCC299] Length = 669 Score = 77.9 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 10/83 (12%) Query: 647 IENKKLVFTGTLQKIQ--------RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SK 697 + K +V TG ++ + +A+ + G V+ +S +TD+++VG PG SK Sbjct: 519 LAGKTVVLTGVFPQLGGGQGLDLGKARARAMIESFGGRVTGSVSGRTDVLLVGKEPGMSK 578 Query: 698 LEKAQ-QLGVKIMNEEQFLFLLQ 719 + KA+ Q G +++ E LL Sbjct: 579 VTKARNQPGCMVLSLENLCELLN 601 >gi|257059000|ref|YP_003136888.1| BRCT domain protein [Cyanothece sp. PCC 8802] gi|256589166|gb|ACV00053.1| BRCT domain protein [Cyanothece sp. PCC 8802] Length = 569 Score = 77.5 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 24/110 (21%) Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL------------GAV 676 + EV+P + + + KK+V G+L ++ R +A+ Y+ + Sbjct: 472 IAEVTPEESQESSAKENPLSGKKVVIAGSLSQMTREEARGYLQKAGGSLTSSLSSKT--- 528 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 I++G+ PG K++KA +LGV + E QF+ LL+ N ++ Sbjct: 529 ---------HYIVIGNAPGDKVKKAHKLGVTQLTETQFMDLLKSANISIS 569 >gi|326795140|ref|YP_004312960.1| hypothetical protein Marme_1869 [Marinomonas mediterranea MMB-1] gi|326545904|gb|ADZ91124.1| hypothetical protein Marme_1869 [Marinomonas mediterranea MMB-1] Length = 286 Score = 77.5 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 14/82 (17%) Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSKLEKA 701 +V +G R ++ G + +S+KTD ++ G G K+EKA Sbjct: 205 SIVVSGEFDMGSRDDVKDIAIGRGYRLLGSVSKKTDYLVFGSKVSPNWGANNFGGKIEKA 264 Query: 702 QQLG-----VKIMNEEQFLFLL 718 +L +KI++E Q++ L Sbjct: 265 VKLKLEGYPIKIISESQWISFL 286 >gi|168703129|ref|ZP_02735406.1| hypothetical protein GobsU_26601 [Gemmata obscuriglobus UQM 2246] Length = 1098 Score = 77.5 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 16/94 (17%) Query: 641 KNVSSEIE-NK-KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---- 694 ++ K FTGTL I A+ V V+A +S K ++VGD+ Sbjct: 641 AAAGGPVDLGKASFCFTGTLANITAKDAEARVKGANGTVAANVSPKLHYLVVGDSGSPFL 700 Query: 695 -----GSKLEKAQQL-----GVKIMNEEQFLFLL 718 G+K KA++L + I++E FL +L Sbjct: 701 GQGQKGAKYIKAEELNANGANISIISETMFLQML 734 >gi|254510966|ref|ZP_05123033.1| exonuclease [Rhodobacteraceae bacterium KLH11] gi|221534677|gb|EEE37665.1| exonuclease [Rhodobacteraceae bacterium KLH11] Length = 334 Score = 77.5 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 15/97 (15%) Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD------- 692 E N + + FTG L + R +A G V +S+K ++IVGD Sbjct: 233 EGNQNGPLYGHVACFTGKLS-MSRSEASTVAAGAGLSVKTSVSKKITLLIVGDQDLELLN 291 Query: 693 --NPGSKLEKAQQL-----GVKIMNEEQFLFLLQQYN 722 SK +A++L +KI+ E F L+++ N Sbjct: 292 GQEKSSKHRRAEELIEQGQDIKIIGESDFRSLVEKSN 328 >gi|171676372|ref|XP_001903139.1| hypothetical protein [Podospora anserina S mat+] gi|170936252|emb|CAP60911.1| unnamed protein product [Podospora anserina S mat+] Length = 676 Score = 77.5 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 7/90 (7%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----NPGSKLEKA 701 ++ K+ +GT + + + +GA VS ++ T ++ + P +K+ KA Sbjct: 17 PLDGCKIALSGTFAGMTQSAVKAKAEAVGATVSTAVTEDTTHLVATEADFNKPSAKVTKA 76 Query: 702 QQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731 Q LG+ I++ ++L L +Q N+ + +DD Sbjct: 77 QTLGIPIVSF-EWLSLSEQKNS--KQAEDD 103 >gi|153933783|ref|YP_001382659.1| DNA polymerase III subunit epsilon [Clostridium botulinum A str. ATCC 19397] gi|153935123|ref|YP_001386211.1| DNA polymerase III subunit epsilon [Clostridium botulinum A str. Hall] gi|152929827|gb|ABS35327.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum A str. ATCC 19397] gi|152931037|gb|ABS36536.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum A str. Hall] Length = 309 Score = 77.1 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 14/84 (16%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702 +VFTG L + R++A V +L V + +++KT ++ + +KL+KA Sbjct: 226 VVFTGGLASMTRNEAMILVGKLNGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAI 285 Query: 703 QL-----GVKIMNEEQFLFLLQQY 721 L +K +NEE FL ++ Sbjct: 286 DLKKKGQNIKFLNEEAFLQKCKEK 309 >gi|11999114|gb|AAG43050.1|AF139827_1 replication factor C subunit 1 [Plasmodium falciparum] Length = 904 Score = 77.1 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 25/105 (23%) Query: 629 LKEVSPSIGRHEKNVSS-----------EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 K V S + +K ++ N+K V TG + R + Q + + G V Sbjct: 184 KKNVLISPAKKQKTQNNNNEDLQKFDYLPFHNQKFVITGVFKNFTRDELQSKIKEHGGSV 243 Query: 678 SAILSRKTDIIIVGD--------NPGSKLEKAQQL------GVKI 708 +S KT+ ++ G+ N G K KA +L +KI Sbjct: 244 MTAVSTKTNYLVHGEYLEDGRLFNEGRKYTKAFELQQQNKSNIKI 288 >gi|330872403|gb|EGH06552.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. glycinea str. race 4] Length = 379 Score = 77.1 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 61/392 (15%), Positives = 112/392 (28%), Gaps = 57/392 (14%) Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 +G + G +M Q++ L + + + P Sbjct: 39 AIGLFVWDWPNGPGDMAQRLAGLQAMGFEDSAAYSHPLENYAKAARWREHWYRNPLPFAT 98 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 + + +A +P W+ + K QA + + +GR+G +TPV L PV Sbjct: 99 DGVIMRQGQRPPMQRWQASAPYWIAAWKHPYAQALAEVRKVSFNVGRSGRITPVLELTPV 158 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + ++ + DIR GD+V V AG IP++ +I Sbjct: 159 RLDDRTVSRIS-----------TGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVISRAA 207 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDA 480 C C +Q RL + Sbjct: 208 ERVEMII-------------------PQADDFHELSCWQATPGCESQFRARLIWLSGKKG 248 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 + G+G D ++ I +L + ++ NI GF + S L Sbjct: 249 LALPGVGPGTWDKLIENG----------QIESLLDWMTLNHAELANIPGFAERSSAKLLA 298 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 S+ R + ++ ++G+ G+ +N Sbjct: 299 SLQTARERPFQTWLKAIGLPPTGSAT----------------LPDNWQELAGRSVEQWQA 342 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632 P +G A + F+Q P L + Sbjct: 343 EPGIGPGRAAKLRSFFQAPEVQALSHQLQAQG 374 >gi|148378258|ref|YP_001252799.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum A str. ATCC 3502] gi|148287742|emb|CAL81808.1| putative exonuclease [Clostridium botulinum A str. ATCC 3502] Length = 309 Score = 77.1 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 14/84 (16%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702 +VFTG L + R++A V +L V + +++KT ++ + +KL+KA Sbjct: 226 VVFTGGLASMTRNEAMILVGKLNGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAI 285 Query: 703 QL-----GVKIMNEEQFLFLLQQY 721 L +K +NEE FL ++ Sbjct: 286 DLKKKGQNIKFLNEEAFLQKCKEK 309 >gi|124801451|ref|XP_001349697.1| replication factor C subunit 1, putative [Plasmodium falciparum 3D7] gi|3845304|gb|AAC71968.1| replication factor C subunit 1, putative [Plasmodium falciparum 3D7] Length = 904 Score = 77.1 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 25/105 (23%) Query: 629 LKEVSPSIGRHEKNVSS-----------EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 K V S + +K ++ N+K V TG + R + Q + + G V Sbjct: 184 KKNVLISPAKKQKTQNNNNEDLQKFDYLPFHNQKFVITGVFKNFTRDELQSKIKEHGGSV 243 Query: 678 SAILSRKTDIIIVGD--------NPGSKLEKAQQL------GVKI 708 +S KT+ ++ G+ N G K KA +L +KI Sbjct: 244 MTAVSTKTNYLVHGEYLEDGRLFNEGRKYTKAFELQQQNKSNIKI 288 >gi|304311282|ref|YP_003810880.1| exonuclease domain in DNA-polymerase alpha and epsilon chain [gamma proteobacterium HdN1] gi|301797015|emb|CBL45228.1| exonuclease domain in DNA-polymerase alpha and epsilon chain [gamma proteobacterium HdN1] Length = 297 Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 15/94 (15%) Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 E N E+ + LVFTG L+ + R +A +G V +++KT I++VGD SKL Sbjct: 199 EGNPQGELTGEILVFTGQLE-MSRQEAANIAASVGCEVVPSVTKKTTILVVGDQDISKLA 257 Query: 700 ---------KAQQ-----LGVKIMNEEQFLFLLQ 719 KA++ L ++I+ E F+ L++ Sbjct: 258 GHEKSAKHRKAEELISMGLSIRILGESDFMELVK 291 >gi|226947476|ref|YP_002802567.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum A2 str. Kyoto] gi|226841365|gb|ACO84031.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum A2 str. Kyoto] Length = 309 Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 14/84 (16%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702 +VFTG L + R++A V +L V + +++KT ++ + +KL+KA Sbjct: 226 VVFTGGLASMTRNEAMILVGKLNGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAI 285 Query: 703 QL-----GVKIMNEEQFLFLLQQY 721 L +K +NEE FL ++ Sbjct: 286 DLKKKGQNIKFLNEEAFLQKCKEK 309 >gi|153938164|ref|YP_001389626.1| DNA polymerase III subunit epsilon [Clostridium botulinum F str. Langeland] gi|152934060|gb|ABS39558.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum F str. Langeland] gi|295317718|gb|ADF98095.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum F str. 230613] Length = 309 Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 14/84 (16%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702 +VFTG L + R++A V +L V + +++KT ++ + +KL+KA Sbjct: 226 VVFTGGLASMTRNEAMILVGKLNGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAI 285 Query: 703 QL-----GVKIMNEEQFLFLLQQY 721 L +K +NEE FL ++ Sbjct: 286 DLKKKGQNIKFLNEEAFLQKCKEK 309 >gi|66808577|ref|XP_638011.1| replication factor C subunit [Dictyostelium discoideum AX4] gi|74853625|sp|Q54MH9|RFC1_DICDI RecName: Full=Probable replication factor C subunit 1; AltName: Full=Activator 1 subunit 1 gi|60466460|gb|EAL64515.1| replication factor C subunit [Dictyostelium discoideum AX4] Length = 1401 Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + K + +G + +R + + + + G V+ + + ++ G + G KLE A+++G Sbjct: 642 LRGKVFLVSGVMDCFERDEMHDIIKRWGGKVAKSAVKLLNYLVSGKDVGEKKLEGAKKVG 701 Query: 706 VKIMNEEQFLFLLQQ 720 KI+ E++FL ++ + Sbjct: 702 AKIITEDEFLEMINK 716 >gi|309784373|ref|ZP_07679012.1| NAD-dependent DNA ligase adenylation domain protein [Shigella dysenteriae 1617] gi|308927880|gb|EFP73348.1| NAD-dependent DNA ligase adenylation domain protein [Shigella dysenteriae 1617] Length = 153 Score = 76.8 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 23/156 (14%) Query: 43 ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102 + D YD L R F + V H + + K+ Sbjct: 1 MEDGVYDQLSARLTQWQRCF---------GSEPRDVMMPPLNG--AVMHPVAHTGVRKMV 49 Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162 + L ++ W ++PK+DG +T+ Y GK A RG+G GED Sbjct: 50 DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98 Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + + I +P+ +S ++GE+++ + Sbjct: 99 WTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREGH 133 >gi|78779078|ref|YP_397190.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9312] gi|78712577|gb|ABB49754.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9312] Length = 249 Score = 76.8 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 59/306 (19%), Positives = 107/306 (34%), Gaps = 64/306 (20%) Query: 25 EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84 E+ I ++DD Y + +I D ++D L++ + P Sbjct: 6 EERIEWYDDNYRNGNA-LISDKQFDQLEKNLLRTNPNCDYFKKRSKLVLP---------- 54 Query: 85 SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144 SLEK + + +F+ + +EPKIDG + ++Y Sbjct: 55 ------------SLEK----DSIDRFLEGLL--------ADTRLLIEPKIDGCAVALQYR 90 Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204 G A R G DV+ + + IP L L +++VRGE+Y S Sbjct: 91 DGILEKAISR----KGTDVTTKLIKVQDIPNHLPL--RGVLQVRGELYASN--------- 135 Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264 + P + R A+ + + + + F + QYE + + L Sbjct: 136 -----QTPNISQRMASGYLRAKEGFPERLSFCAFQILN-------STLNQYESKKSLSEL 183 Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA-RSPR 323 GF + + N + + + + Y DG+V K++ LQ + P Sbjct: 184 GFTIPQDI-SCNFTSQVQVFRKQWIEGKLFREYPTDGIVVKINSRKLQLIREKSNLDYPY 242 Query: 324 WMISHK 329 W ++ K Sbjct: 243 WQVAIK 248 >gi|182418640|ref|ZP_02949917.1| DNA polymerase III subunit epsilon [Clostridium butyricum 5521] gi|237668503|ref|ZP_04528487.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377502|gb|EDT75056.1| DNA polymerase III subunit epsilon [Clostridium butyricum 5521] gi|237656851|gb|EEP54407.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 308 Score = 76.4 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 14/84 (16%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSK 697 + +VFTG L + R +A V +LG + +++KT I++ + +K Sbjct: 221 FKGDTVVFTGRLSSMTRDEAIRLVRRLGGASGSSVTKKTTILVSNIKDIHELKRNEMSTK 280 Query: 698 LEKAQQL-----GVKIMNEEQFLF 716 + KA L + ++E +F+ Sbjct: 281 MRKAVDLKLMGQKIDFIDENEFIK 304 >gi|299541821|ref|ZP_07052144.1| DNA polymerase III [Lysinibacillus fusiformis ZC1] gi|298725559|gb|EFI66200.1| DNA polymerase III [Lysinibacillus fusiformis ZC1] Length = 110 Score = 76.4 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 13/105 (12%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 +N++ NK++VFTG L + R +A + V G + +++ TD +++G+ Sbjct: 10 IFFSDPIENLTHPFYNKQIVFTGALSTMTRSEAAKQVKAYGGYLQGAVTQHTDFVVLGNK 69 Query: 694 ---PGSKLEKAQQL-----GVKIMNEEQFLFLLQQYNTTLRIHDD 730 +K KA+QL ++++ E+ FL+L+ ++ DD Sbjct: 70 RRGISAKQHKAEQLIRQGQDIQMLIEDDFLWLI-----SIPKKDD 109 >gi|302873810|ref|YP_003842443.1| Exonuclease RNase T and DNA polymerase III [Clostridium cellulovorans 743B] gi|307689948|ref|ZP_07632394.1| DNA polymerase III subunit epsilon [Clostridium cellulovorans 743B] gi|302576667|gb|ADL50679.1| Exonuclease RNase T and DNA polymerase III [Clostridium cellulovorans 743B] Length = 306 Score = 76.4 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 14/85 (16%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSK 697 +++ +VFTG L + R +A V +LG + +++KT I++ + +K Sbjct: 221 FKDEVVVFTGRLCSMARDEAMRLVRRLGGTAGSSVTKKTTILVTNTKDPKELRKEEMSTK 280 Query: 698 LEKAQQL-----GVKIMNEEQFLFL 717 L KA L ++ +NEE FL + Sbjct: 281 LRKATDLSEKGQNIRFLNEEDFLNI 305 >gi|159111709|ref|XP_001706085.1| Replication factor C, subunit 1 [Giardia lamblia ATCC 50803] gi|157434178|gb|EDO78411.1| Replication factor C, subunit 1 [Giardia lamblia ATCC 50803] Length = 890 Score = 76.4 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQ 703 + + V TG L+ + + YV LG V+ +S +T ++VGD+PG +K+ A+ Sbjct: 175 NSLSKLIFVRTGNLRTMSDTDFKLYVANLGGTVTTAVSGRTSYLVVGDDPGVTKIRDAKA 234 Query: 704 LGVKIMNEEQFLFLL 718 V+I++E++F L+ Sbjct: 235 KFVRIISEKEFYDLV 249 >gi|327303742|ref|XP_003236563.1| chromosome transmission fidelity factor [Trichophyton rubrum CBS 118892] gi|326461905|gb|EGD87358.1| chromosome transmission fidelity factor [Trichophyton rubrum CBS 118892] Length = 1058 Score = 76.0 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 53/150 (35%), Gaps = 10/150 (6%) Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLV---GDIIAQAIVEFYQNPRNICAVEALLKE 631 S + + + L +P V A F + A + Sbjct: 247 KSTPKKPRATKADQQESKEIQAILNSIPEVKAPSPPTATKKFNF------VAAAQRAQSS 300 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 + + + VFTG L + R + Q V + G + S KT +++G Sbjct: 301 GTIDDSDLPVGEPNCLAGLSFVFTGVLDSLGREQGQNLVKKYGGKCMSAPSSKTSYVVLG 360 Query: 692 DNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ G KLE Q+ ++ +NE L+++ Sbjct: 361 NDAGPKKLETIQKYKLRTINEGGLFELIRK 390 >gi|213621265|ref|ZP_03374048.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 50 Score = 76.0 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 25/50 (50%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 +E ++L+ L + +H+ Y+ P ILD+EYD L R + P Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRP 50 >gi|90019261|gb|ABD84282.1| NAD-dependent DNA ligase-like [Yersinia sp. MH-1] Length = 167 Score = 76.0 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 68/162 (41%), Gaps = 22/162 (13%) Query: 41 PIILDSEYDALKRRCDAIAH--AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98 +I D YD L+ R + A P+ R + P +++H + L Sbjct: 5 SLIEDDIYDQLRYRLNHWVRCIAIPE-KRVNNALSPT-------ISLQNRLSHPVAHTGL 56 Query: 99 EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158 +K+ L +++ W ++PK+DG +T+ Y +G A RGDG Sbjct: 57 KKLHGKGALSEWLAERKNLW-----------VQPKVDGVAVTLTYVQGNLTQAISRGDGA 105 Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 G++ + ++ IP IP +S P ++ + GE+++ Sbjct: 106 VGQNWTDKVKYIPAIPHFISQAPP-LLVLHGELFLKVTHHKQ 146 >gi|301093002|ref|XP_002997350.1| replication factor C subunit, putative [Phytophthora infestans T30-4] gi|262110748|gb|EEY68800.1| replication factor C subunit, putative [Phytophthora infestans T30-4] Length = 893 Score = 76.0 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 8/91 (8%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD------NP--GSKL 698 ++ K F+G L+ + R A V G ++ ++R T +++G N GSK Sbjct: 212 LDGKTFAFSGVLESLSREDAVHLVKSCGGSIAISITRSTKYLVIGSTLEQGGNVTDGSKY 271 Query: 699 EKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729 ++A V+I+ + +F L+ + T + D Sbjct: 272 KEAVAKNVRILTQNEFYNLITEAATAQQTQD 302 >gi|330883891|gb|EGH18040.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. glycinea str. race 4] Length = 105 Score = 76.0 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 13/114 (11%) Query: 90 THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149 H + + K+ + ++ ++ W ++PK+DG +T+ YE G+ V Sbjct: 2 PHPVAHTGVNKLADESSVKDWLEGRNDLW-----------IQPKVDGVAVTLVYENGQLV 50 Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 A RGDG G+D ++ R I TIP L PE ++GE+Y +D + Sbjct: 51 QAISRGDGRKGQDWTSQARLIKTIP--QHLPQPESAILQGELYWRLDDHIQSAS 102 >gi|257880530|ref|ZP_05660183.1| predicted protein [Enterococcus faecium 1,230,933] gi|257883538|ref|ZP_05663191.1| predicted protein [Enterococcus faecium 1,231,502] gi|294623257|ref|ZP_06702124.1| DNA polymerase III, epsilon subunit [Enterococcus faecium U0317] gi|314940265|ref|ZP_07847437.1| conserved domain protein [Enterococcus faecium TX0133a04] gi|314943571|ref|ZP_07850331.1| conserved domain protein [Enterococcus faecium TX0133C] gi|314950783|ref|ZP_07853856.1| conserved domain protein [Enterococcus faecium TX0133A] gi|314992904|ref|ZP_07858303.1| conserved domain protein [Enterococcus faecium TX0133B] gi|314996095|ref|ZP_07861170.1| conserved domain protein [Enterococcus faecium TX0133a01] gi|257814758|gb|EEV43516.1| predicted protein [Enterococcus faecium 1,230,933] gi|257819196|gb|EEV46524.1| predicted protein [Enterococcus faecium 1,231,502] gi|291597328|gb|EFF28512.1| DNA polymerase III, epsilon subunit [Enterococcus faecium U0317] gi|313589722|gb|EFR68567.1| conserved domain protein [Enterococcus faecium TX0133a01] gi|313592581|gb|EFR71426.1| conserved domain protein [Enterococcus faecium TX0133B] gi|313597029|gb|EFR75874.1| conserved domain protein [Enterococcus faecium TX0133A] gi|313597738|gb|EFR76583.1| conserved domain protein [Enterococcus faecium TX0133C] gi|313640509|gb|EFS05089.1| conserved domain protein [Enterococcus faecium TX0133a04] Length = 99 Score = 75.6 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 14/89 (15%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-------DNP--GSK 697 + N+++VFTGTLQ++ R +A V L + ++ KT+ ++ G D+ K Sbjct: 3 LTNQRVVFTGTLQQMTRTQAIGLVHSLNGHCQSSVTSKTNFLVCGQYSKSLFDDSLYTKK 62 Query: 698 LEKAQQL-----GVKIMNEEQFLFLLQQY 721 + A+ L + I++E +F L+ Q Sbjct: 63 EQTARDLIALGHEITILSEVEFYALISQQ 91 >gi|169830139|ref|YP_001700297.1| DNA polymerase III [Lysinibacillus sphaericus C3-41] gi|168994627|gb|ACA42167.1| DNA polymerase III [Lysinibacillus sphaericus C3-41] Length = 126 Score = 75.2 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 8/95 (8%) Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 + ++ S +K++VFTG L K+ R +A ++V G + ++++TD II+G Sbjct: 24 LDIIFSDPIESPSHPFYHKQIVFTGALSKMTRSEAAKHVKACGGFLQGTVTQQTDFIILG 83 Query: 692 DN---PGSKLEKAQQL-----GVKIMNEEQFLFLL 718 D +K KA+QL ++I+ E FL+++ Sbjct: 84 DKRRGISTKQRKAEQLINLGQDIQILIESDFLWII 118 >gi|168177595|ref|ZP_02612259.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum NCTC 2916] gi|182670548|gb|EDT82522.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum NCTC 2916] Length = 309 Score = 75.2 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 14/84 (16%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702 +VFTG L + R++ V +L V + +++KT ++ + +KL+KA Sbjct: 226 VVFTGGLASMTRNEVMILVGKLNGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAI 285 Query: 703 QL-----GVKIMNEEQFLFLLQQY 721 L +K +NEE FL ++ Sbjct: 286 DLKKKGQNIKFLNEEAFLQKCKEK 309 >gi|187777136|ref|ZP_02993609.1| hypothetical protein CLOSPO_00681 [Clostridium sporogenes ATCC 15579] gi|187774064|gb|EDU37866.1| hypothetical protein CLOSPO_00681 [Clostridium sporogenes ATCC 15579] Length = 309 Score = 74.8 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 14/84 (16%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702 +VFTG L + R++A V +L V + +++KT ++ + +KL+KA Sbjct: 226 VVFTGGLASMTRNEAIILVGKLNGTVGSSVTKKTTCLVTNTKDIEDLNREEMSNKLKKAV 285 Query: 703 QL-----GVKIMNEEQFLFLLQQY 721 L +K +NEE FL ++ Sbjct: 286 DLKKKGQNIKFLNEETFLQKCKEK 309 >gi|170755669|ref|YP_001779899.1| DNA polymerase III subunit epsilon [Clostridium botulinum B1 str. Okra] gi|169120881|gb|ACA44717.1| DNA polymerase III subunit epsilon [Clostridium botulinum B1 str. Okra] Length = 309 Score = 74.4 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 14/84 (16%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702 +VFTG L + R++A V +L V + +++KT ++ + +KL+KA Sbjct: 226 VVFTGGLASMTRNEAMILVGKLNGTVGSSVTKKTTCLVTNTKDIEDLNREEMSNKLKKAI 285 Query: 703 QL-----GVKIMNEEQFLFLLQQY 721 L +K +NEE FL ++ Sbjct: 286 DLKKKGQNIKFLNEEAFLQKCKEK 309 >gi|307825547|ref|ZP_07655765.1| BRCT domain protein [Methylobacter tundripaludum SV96] gi|307733433|gb|EFO04292.1| BRCT domain protein [Methylobacter tundripaludum SV96] Length = 211 Score = 74.4 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 54/139 (38%), Gaps = 23/139 (16%) Query: 604 VGDIIAQAIVEFYQNPRNICAVEALL---------KEVSPSIGRHEKNVSSEIENKKLVF 654 + DI+A I+ + + L+ + +++ + Sbjct: 70 IDDILADNIITQEEREDFYQTLSKLIGGTFQETGAAGGFSTSFGNQEPDELIVNGSTFCL 129 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSKLEKA---Q 702 TG R K ++ +T+LG + + +++K D +++G G K+EKA Q Sbjct: 130 TGAFITGTRDKCEQIITELGGIPAKSVTKKLDYLVIGALASRDWIATSHGRKIEKALLYQ 189 Query: 703 QLG--VKIMNEEQFLFLLQ 719 + G V I+ EE + + Sbjct: 190 EQGSPVTILCEESWAKFIN 208 >gi|300933324|ref|ZP_07148580.1| hypothetical protein CresD4_04595 [Corynebacterium resistens DSM 45100] Length = 277 Score = 74.4 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 47/94 (50%), Gaps = 7/94 (7%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD- 692 + ++ + + + + TG ++ + + + + Q G V +++KT ++I+G+ Sbjct: 183 VPETNEKADIDNPVYGQVVCVTGDVEPYDKGQIWDMIAQAGGEVGKNVTKKTTMLIIGEW 242 Query: 693 -NPGSKLEKAQQL-----GVKIMNEEQFLFLLQQ 720 SK ++A++L +K++ +FL ++ + Sbjct: 243 ATTTSKEKRARELIDKGQEIKLVQLAEFLEMVGE 276 >gi|322804522|emb|CBZ02073.1| putative DNA polymerase III epsilon chain [Clostridium botulinum H04402 065] Length = 309 Score = 74.4 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 14/84 (16%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702 +VFTG L + R++A V +L V + +++KT ++ + +KL+KA Sbjct: 226 VVFTGGLASMTRNEAMILVGKLNGTVGSSVTKKTTCLVTNTKDIEDLNREEMSNKLKKAI 285 Query: 703 QL-----GVKIMNEEQFLFLLQQY 721 L +K +NEE FL ++ Sbjct: 286 DLKKKGQNIKFLNEEAFLQKCKEK 309 >gi|255524855|ref|ZP_05391804.1| Exonuclease RNase T and DNA polymerase III [Clostridium carboxidivorans P7] gi|255511425|gb|EET87716.1| Exonuclease RNase T and DNA polymerase III [Clostridium carboxidivorans P7] Length = 306 Score = 74.1 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 14/82 (17%) Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKL 698 +N+ +VFTG L + R +A V LG + ++RKT I++ + +KL Sbjct: 222 KNEVVVFTGRLDSMPRDEAMGLVRVLGGTTGSSVTRKTTILVTNMKDAKDLRREEMSTKL 281 Query: 699 EKAQQLGVK---I--MNEEQFL 715 ++A L +K I +NE++FL Sbjct: 282 KRAVDLNIKGQNIRFLNEDEFL 303 >gi|149911915|ref|ZP_01900514.1| DNA ligase [Moritella sp. PE36] gi|149805008|gb|EDM65036.1| DNA ligase [Moritella sp. PE36] Length = 189 Score = 73.7 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 18/133 (13%) Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEI 647 +D+ + L +P + + E+ + N K + + + + Sbjct: 62 ATDDEVIQLKDLPYIKQK----LEEWEEFKLNGKVAHERAKTILKQEDIEREYSTLDEIL 117 Query: 648 E--NKK---LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-----SK 697 N + TGTL I R A+ + GA+V + ++T + +G N G SK Sbjct: 118 TTINMTDIRVALTGTLP-IPRADAKSLLESHGAIVMGSVGKQTSFLFMG-NTGRHEITSK 175 Query: 698 LEKAQQLGVKIMN 710 ++KA LGVKI+ Sbjct: 176 MKKAHDLGVKIIT 188 >gi|238764312|ref|ZP_04625263.1| DNA ligase B [Yersinia kristensenii ATCC 33638] gi|238697463|gb|EEP90229.1| DNA ligase B [Yersinia kristensenii ATCC 33638] Length = 318 Score = 73.7 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 57/363 (15%), Positives = 108/363 (29%), Gaps = 58/363 (15%) Query: 278 FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAST 337 F G + LP+ DG+V + D A W ++ K+ Q T Sbjct: 14 FSGSDVAHWRKLWFEMPLPFVTDGVVIRQD--DEPAGRYWHATPGNWSVAWKYPPPQQIT 71 Query: 338 RLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRV 397 + DI +GRTG +T + ++ PV I I + DI Sbjct: 72 EIKDIHFTVGRTGKVTAILQVVPVKIDDKWIRRVNV-----------GSIARWKQWDIVP 120 Query: 398 GDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR 457 GD+V + AG IP++ +++ D ++ P Sbjct: 121 GDQVTITLAGLGIPRLDNVVWRVSQRD-------------------EITPPAANKFHQLS 161 Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ 517 C L+ + + A ++ + ++ I D +L Q Sbjct: 162 CFRLLSVECKPQFLARLAWLSGANGLDM--QNVGSGLWRELVHHGLINSLVDWLSLSIEQ 219 Query: 518 QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577 + + G G V +Y R +++ +LG ++ + S Sbjct: 220 IAA------VPGIGQVRAEKIYLQFQLARQQPFPQWLQALGFPQEIPIDSQWYSLQQRSI 273 Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637 + + +G + A+ I F +P + L ++ Sbjct: 274 TEWRL------------------ISGIGAVRAKQINHFLHHPEIQMMADFLSQQGITGFR 315 Query: 638 RHE 640 E Sbjct: 316 PEE 318 >gi|229516132|ref|ZP_04405581.1| hypothetical protein VCC_000147 [Vibrio cholerae RC9] gi|229346782|gb|EEO11751.1| hypothetical protein VCC_000147 [Vibrio cholerae RC9] Length = 207 Score = 73.3 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 17/148 (11%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636 +++ +E + + DD ++ V D A I+ + + E K + Sbjct: 57 LESYNRESSLLDIGAGDDRDLIVTVEGFKDKTAFKIMAGMAS--HAELFE---KISTIIK 111 Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696 + + V +K+V TG + ++ + G + +S KT ++I GS Sbjct: 112 FQQKVAVGKRFAGQKVVITG----FRDGALEKMIEAEGGEMQTSVSAKTTLVIAASISGS 167 Query: 697 --KLEKAQQLG------VKIMNEEQFLF 716 KL+K L +K+M+ F Sbjct: 168 SGKLKKVHDLNNSGKASIKLMDLATFRK 195 >gi|207110629|ref|ZP_03244791.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_CA4C1] Length = 77 Score = 73.3 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%) Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKI 661 G +A+++V FY + N + +L ++P + ++ SS NK +V TGTL K Sbjct: 1 GVEMARSLVNFYAS--NQEFIRSLFDLLNPKNSDMTEEKQKSSSVFNNKTIVLTGTLSK- 57 Query: 662 QRHKAQEYVTQLGAVVS 678 R + + + LGA +S Sbjct: 58 PRQEYAQTLENLGAKIS 74 >gi|227487575|ref|ZP_03917891.1| DNA polymerase III subunit epsilon [Corynebacterium glucuronolyticum ATCC 51867] gi|227092557|gb|EEI27869.1| DNA polymerase III subunit epsilon [Corynebacterium glucuronolyticum ATCC 51867] Length = 310 Score = 73.3 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 59/115 (51%), Gaps = 16/115 (13%) Query: 622 ICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680 A+ + + + E+ +S + + +VFTGTL++ +R Q+ V+ +G + Sbjct: 196 RQAIPRVRADHVSAEALIEQYGNSPALVGEHVVFTGTLKRGKRTDVQQLVSAIGGIADKS 255 Query: 681 LSRKTDIIIVG--------D--NPGSKLEKAQQL---G--VKIMNEEQFLFLLQQ 720 L++KT +++VG + + SKL KA +L G +++++EE+F L Sbjct: 256 LTKKTTLLVVGILDPRRWVEGCSGSSKLLKATKLRESGSPIEVISEEEFFNRLGD 310 >gi|90023505|ref|YP_529332.1| hypothetical protein Sde_3865 [Saccharophagus degradans 2-40] gi|89953105|gb|ABD83120.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Saccharophagus degradans 2-40] Length = 201 Score = 73.3 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 26/136 (19%) Query: 607 IIAQAIVEF-YQNPRNICAVEALLKEVSPSIGRHEKNVSS-----------EIENKKLVF 654 +++A+ + + + L S E +S E K +F Sbjct: 62 KVSEALADGVLDEEESRELLTILRTISGESSEIGEVAKTSALPLCSPAPKLEFAGKSYLF 121 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKA---Q 702 TGT R + Q + LG VV++ +++K D++++G + G K+EKA + Sbjct: 122 TGTCAYGNRKQCQAAIETLGGVVASSVTKKLDVLVLGTYVTESWAHETFGRKIEKAMAYR 181 Query: 703 QLG--VKIMNEEQFLF 716 + G + I++E+ ++ Sbjct: 182 ESGLPIAIVSEQHWVN 197 >gi|296122435|ref|YP_003630213.1| hypothetical protein Plim_2188 [Planctomyces limnophilus DSM 3776] gi|296014775|gb|ADG68014.1| Tetratricopeptide TPR_2 repeat protein [Planctomyces limnophilus DSM 3776] Length = 442 Score = 73.3 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 14/92 (15%) Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-------- 693 ++ ++ +++ FTGTL + +A YV Q G + +S++T +++VGD Sbjct: 18 KSTAPLQGERVTFTGTLASMTHREAAGYVEQFGGTFTTQVSQQTTLLVVGDEGWPLEEDG 77 Query: 694 -PGSKLEKAQQL---G--VKIMNEEQFLFLLQ 719 P KLE A++L G +KI++E ++L L++ Sbjct: 78 QPSLKLEAARELLERGFPIKILSEPEWLQLIE 109 >gi|325109435|ref|YP_004270503.1| BRCT domain protein [Planctomyces brasiliensis DSM 5305] gi|324969703|gb|ADY60481.1| BRCT domain protein [Planctomyces brasiliensis DSM 5305] Length = 465 Score = 72.9 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 16/105 (15%) Query: 631 EVSPSIGRHEKNVSSEI--ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 V S + + + E + + TGTL + +A E + + G V + +SR+T ++ Sbjct: 48 AVGQSSAAQPEPQENPLVLEGESVAITGTLASMTHDQAAEQIQRHGGVTTTHVSRQTTML 107 Query: 689 IVGD---------NPGSKLEKAQQL-----GVKIMNEEQFLFLLQ 719 ++G+ P KL+ AQ L ++I+ E +L +L+ Sbjct: 108 VIGEEGWPLESDGKPSQKLQAAQALIDDGHSLRIVPETDWLRMLE 152 >gi|325188879|emb|CCA23408.1| replication factor C subunit putative [Albugo laibachii Nc14] Length = 774 Score = 72.9 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 12/89 (13%), Positives = 33/89 (37%), Gaps = 8/89 (8%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--------DNPGSKL 698 + +G + R + G ++ ++R T+ +++G K Sbjct: 102 LNGTTFALSGIFENCSRDDCIHLIKVCGGSITNSVTRNTNYLVLGTKLENGNDPKTSMKY 161 Query: 699 EKAQQLGVKIMNEEQFLFLLQQYNTTLRI 727 + A + V+I+++ L+++ T Sbjct: 162 KDAIEKNVQIISQADLYDLIKEAPETPAK 190 >gi|308177075|ref|YP_003916481.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis Re117] gi|307744538|emb|CBT75510.1| putative DNA polymerase III subunit epsilon [Arthrobacter arilaitensis Re117] Length = 333 Score = 72.9 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 16/118 (13%) Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 A +E + S + + +VFTG L + R KA+E + GA ++ + Sbjct: 216 QDAFNNWPQEGPNPDPNQNADPSHPLFGQTMVFTGNLS-MPRPKAKELAAEHGAQTASRV 274 Query: 682 SRKTDIIIVGDN------PGSKLE-KAQ------QLG--VKIMNEEQFLFLLQQYNTT 724 +R T ++VGD +L KA+ + G V I++E +F+ ++ + T Sbjct: 275 TRATTALVVGDGFVPQDLANGRLTNKAKHVLRLREKGQRVSIISEGEFMQMVGGFGLT 332 >gi|325119805|emb|CBZ55358.1| putative NAD-dependent DNA ligase OB-fold domain containing protein [Neospora caninum Liverpool] Length = 1981 Score = 72.5 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 6/73 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++E L + + D Y+ + + D+ YD LK R + P L P P + Sbjct: 285 KEEYHKLVETLRACDRAYHVGAHSPLPDAVYDQLKARLLHLEEVHPSLV---TPESPSSY 341 Query: 78 IGGEMNLSLFKVT 90 +G VT Sbjct: 342 VGAGP---FASVT 351 Score = 47.5 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 18/113 (15%) Query: 147 KFVYAALRGDGHSGEDVSACIRAIPT---------------IPRVLSLNIPEIIEVRGEV 191 + V A+ RG+G GED+S +R + P + +E+RGE+ Sbjct: 707 ELVDASPRGNGSWGEDISHSVRVMHQAGRLPVAFSTRLLTSQPLAPGALANQFLEIRGEL 766 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244 ++ +++F + G+ + R+AA GI + + L F +GL Sbjct: 767 FLPRSNFQDYVERRRKEGKNTPLHERHAARGIA---DTGEHADLLCFAAYGLV 816 >gi|219110151|ref|XP_002176827.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217411362|gb|EEC51290.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 609 Score = 72.5 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 21/123 (17%) Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ--------KIQRHKAQEYVTQLGAVVSAI 680 + I S ++ K++V TG + + K ++ V G V+ Sbjct: 272 RESFIVPIPGENGVASDALKGKRVVLTGVFPEVGGGRGLTLGKEKVKKMVESFGGRVTGS 331 Query: 681 LSRKTDI------------IIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRI 727 +S KTD+ +IVG +PG SK+ +A+ V +++ + ++ Sbjct: 332 VSGKTDMVLFTLSPSTNLKLIVGKDPGFSKVSQARGRSVTLLSLKDLKEGIESNCLEYTR 391 Query: 728 HDD 730 H+D Sbjct: 392 HED 394 >gi|72382253|ref|YP_291608.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL2A] gi|72002103|gb|AAZ57905.1| putative NAD-dependent DNA ligase (contains BRCT domain type II) [Prochlorococcus marinus str. NATL2A] Length = 210 Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 77/217 (35%), Gaps = 26/217 (11%) Query: 111 ITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI 170 + W K ++PKIDG I +RY+ G+ V A R D + IR I Sbjct: 17 DKDCFSSWWAKLPEGSTMVVQPKIDGCAIGLRYKYGQLVDAYTRDDSE----IIENIRNI 72 Query: 171 PTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230 +IP + ++ +E+ G +Y ++ + S ++ + Sbjct: 73 NSIPLSIDDSLKVEVELEGVLYTPFSN--------------SKISIEQLLSNSFSEIDNS 118 Query: 231 DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290 + F + + L +++ GF V +R + + ++++ Sbjct: 119 TSILFKAFQIF-------CSKSDELSDLTQLQNWGFEVPITLRT-DDPRQVKRWHSQWIK 170 Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327 +G+V K + + LG SP W ++ Sbjct: 171 NELFSNLPTNGIVAKCNSSLTKNFLGSSPSSPNWALA 207 >gi|124025816|ref|YP_001014932.1| hypothetical protein NATL1_11091 [Prochlorococcus marinus str. NATL1A] gi|123960884|gb|ABM75667.1| Hypothetical protein NATL1_11091 [Prochlorococcus marinus str. NATL1A] Length = 200 Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 78/217 (35%), Gaps = 26/217 (11%) Query: 111 ITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI 170 + W K ++PKIDG I +RY+ G+ V A R D + IR I Sbjct: 7 DKDCFSSWWAKLPEGSTMVVQPKIDGCAIGLRYKYGQLVDAYTRDDSE----IIENIRNI 62 Query: 171 PTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230 +IP + ++ +E+ G +Y ++ + S +++ + Sbjct: 63 NSIPLSIDDSLKVEVELEGVLYSPFSN--------------SKISIEQLLSNSFSKIDNS 108 Query: 231 DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290 + F + + L +++ GF V +R + + ++++ Sbjct: 109 TSILFKAFQIF-------CSKSDELSDLTQLQNWGFEVPITLRT-DDPRQVKRWHSQWIK 160 Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327 +G+V K + + LG SP W ++ Sbjct: 161 NELFSNLPTNGIVAKCNSSLTKNFLGASPSSPNWALA 197 >gi|68486652|ref|XP_712820.1| hypothetical protein CaO19.6891 [Candida albicans SC5314] gi|46434235|gb|EAK93651.1| hypothetical protein CaO19.6891 [Candida albicans SC5314] Length = 688 Score = 71.8 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 39/63 (61%), Gaps = 1/63 (1%) Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLF 716 + + R A++ Q GA V+ +S KT ++++G + G SK++K +Q +K ++E F+ Sbjct: 1 MPNLDRGTAEQTAKQYGAKVTKSISGKTSLVVLGADAGPSKVQKIKQHKIKAIDEAGFIK 60 Query: 717 LLQ 719 LL+ Sbjct: 61 LLE 63 >gi|92115957|ref|YP_575686.1| exonuclease [Nitrobacter hamburgensis X14] gi|91798851|gb|ABE61226.1| Exonuclease [Nitrobacter hamburgensis X14] Length = 334 Score = 71.8 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 15/93 (16%) Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----DNPG-- 695 N + +VFTG L I R +A + +LG V ++++T ++ G G Sbjct: 194 NPDGPFSGETIVFTGEL-NIPRSEAADIAKRLGFRVEDGVTKRTTVLCAGVQDRTKTGGY 252 Query: 696 ---SKLEKAQQL-----GVKIMNEEQFLFLLQQ 720 SK KA+ L ++I++E F ++ + Sbjct: 253 DKSSKHRKAESLAGLGQDIRILSEGDFWAIVPK 285 >gi|332557484|ref|ZP_08411806.1| Exonuclease [Rhodobacter sphaeroides WS8N] gi|332275196|gb|EGJ20511.1| Exonuclease [Rhodobacter sphaeroides WS8N] Length = 309 Score = 71.8 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 15/99 (15%) Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN- 693 R + E +VFTG+L + R +A + G V A ++++T +++VGD Sbjct: 210 EPVRRAPSPGRAFEGCAVVFTGSLS-LSRKEAADLAAARGMTVLAGVTKQTTLLVVGDQD 268 Query: 694 ----PG----SKLEKAQ---QLG--VKIMNEEQFLFLLQ 719 G SK KA+ G ++I+ E +FL ++Q Sbjct: 269 LSCLAGQLKSSKHRKAEACIANGQPIRIIGEAEFLTMVQ 307 >gi|6739583|gb|AAF27316.1| unknown [Lactococcus lactis] Length = 98 Score = 71.4 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 16/90 (17%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----D-----NPGSK 697 +EN+ VFTGTL + R +AQ ++ L + +++KT ++ G D +P K Sbjct: 2 LENEYFVFTGTLTTMTRKQAQAIISGLEGHNQSSVTKKTTRLVTGYFPIDLIKGYSPSQK 61 Query: 698 LEKAQQLGVK------IMNEEQFLFLLQQY 721 L +A+Q ++ IM+E++F+ L Q+ Sbjct: 62 LTEAEQ-AIESGQPLIIMSEKEFVDFLAQF 90 >gi|119960742|ref|YP_948285.1| DNA polymerase III epsilon subunit [Arthrobacter aurescens TC1] gi|119947601|gb|ABM06512.1| putative DNA polymerase III epsilon subunit [Arthrobacter aurescens TC1] Length = 336 Score = 71.4 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 47/104 (45%), Gaps = 16/104 (15%) Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 +E + + + +VFTG L I R +A+ +GA + ++ +T ++I Sbjct: 231 EEGPNPLPNPAAEPGHPLFGQTVVFTGDLA-ITRPEAKSRAADMGARPESRVTARTTVLI 289 Query: 690 VGDN--PG--------SKLEKAQQL-----GVKIMNEEQFLFLL 718 VGD G K ++ +L +++++E +FL ++ Sbjct: 290 VGDGFVAGDLRAGRLTGKAKRVLELHAKGQQIEVVSEGEFLQMV 333 >gi|406012|gb|AAD10575.1| Significant homology to DNA ligase M74792 [Mycoplasma genitalium] Length = 60 Score = 71.4 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%) Query: 26 QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 I +D YY S+P+I D EYD L + + PDL + + P + Sbjct: 1 NLIKNYDYHYYVLSEPLIDDFEYDMLYKSLQQLEKDHPDLIQI---DSPTQR 49 >gi|153956080|ref|YP_001396845.1| DNA ligase [Clostridium kluyveri DSM 555] gi|146348938|gb|EDK35474.1| DNA ligase [Clostridium kluyveri DSM 555] Length = 60 Score = 71.0 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 8/67 (11%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++ L + I YY + I D EYD L + + +P+ AR + P Sbjct: 2 DIKNKVEGLSKLIE-----YYNKDESEITDHEYDKLSLKLRKLEKEYPEYARK---DSPT 53 Query: 76 NKIGGEM 82 K+GG + Sbjct: 54 QKVGGSI 60 >gi|68486597|ref|XP_712849.1| hypothetical protein CaO19.14180 [Candida albicans SC5314] gi|46434265|gb|EAK93680.1| hypothetical protein CaO19.14180 [Candida albicans SC5314] Length = 688 Score = 70.6 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 39/63 (61%), Gaps = 1/63 (1%) Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLF 716 + + R A++ Q GA V+ +S KT ++++G + G SK++K +Q +K ++E F+ Sbjct: 1 MPNLDRGTAEQTAKQYGAKVTKSISGKTSLVVLGTDAGPSKVQKIKQHKIKAIDEAGFIK 60 Query: 717 LLQ 719 LL+ Sbjct: 61 LLE 63 >gi|304311280|ref|YP_003810878.1| probable NAD-dependent DNA ligase (contains BRCT domain type II) [gamma proteobacterium HdN1] gi|301797013|emb|CBL45226.1| probable NAD-dependent DNA ligase (contains BRCT domain type II) [gamma proteobacterium HdN1] Length = 307 Score = 70.6 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 9/67 (13%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSK 697 + TG + + +E +T LG + +S+K + ++VG + G K Sbjct: 211 FADAVFCLTGKSSEYTCDEFKELITSLGGKAVSGISKKVNYLVVGADGNPCSAYACYGRK 270 Query: 698 LEKAQQL 704 +EKA +L Sbjct: 271 IEKAVEL 277 >gi|330792427|ref|XP_003284290.1| hypothetical protein DICPUDRAFT_96642 [Dictyostelium purpureum] gi|325085743|gb|EGC39144.1| hypothetical protein DICPUDRAFT_96642 [Dictyostelium purpureum] Length = 1334 Score = 70.2 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQL-GVKI 708 +G L ++R +A+ + + G V+ +K +IVG G KLEKA+++ GV Sbjct: 609 TFFISGVLDSLERDEAENLIKKYGGNVAKSAVKKLTHMIVGTGAGEQKLEKAKKIRGVVF 668 Query: 709 MNEEQFLFLLQQ 720 ++E+ ++ + Sbjct: 669 IDEDGLFEMISK 680 >gi|291531551|emb|CBK97136.1| exonuclease, DNA polymerase III, epsilon subunit family [Eubacterium siraeum 70/3] Length = 361 Score = 69.8 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 14/116 (12%) Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 I + + + K + V E+ NK + TG + + QE ++ Sbjct: 243 IEDGIIEQSELDYLLEFFKAQINPLNAEIGAVDIELSNKSICLTGDFDYGSKQEVQERLS 302 Query: 672 QLGAVVSAILSRKTDIIIVGDNP---------GSKLEKAQQL---G--VKIMNEEQ 713 ++GA V + ++RKTDI+++G+ G+K +KA +L G + I+ E+ Sbjct: 303 EIGATVVSNVTRKTDILLIGEKGSDSWACGTYGTKAKKAIELRSKGYPIMILKEKD 358 >gi|254994697|ref|ZP_05276887.1| DNA ligase [Anaplasma marginale str. Mississippi] Length = 47 Score = 69.4 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 29/43 (67%) Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + +S T +++ G NPGSK EKA L V++++E+ ++ +++ Sbjct: 2 ANSVSANTWLLVAGSNPGSKHEKALSLNVRVIDEQTWVKMVED 44 >gi|156933190|ref|YP_001437106.1| hypothetical protein ESA_01001 [Cronobacter sakazakii ATCC BAA-894] gi|156531444|gb|ABU76270.1| hypothetical protein ESA_01001 [Cronobacter sakazakii ATCC BAA-894] Length = 301 Score = 69.4 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 19/127 (14%) Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +++ +A+++F + V+ L + + ++ K TG +R Sbjct: 179 EVLHKALIDFTGCDLDSGTVDGLATRL-----PVDDIADVKVSGKAFCLTGIFLAGKRSA 233 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKA---QQLG--VKIMNE 711 ++ + + G +S+ +++K D +++G + G K+EKA + G +KI+ E Sbjct: 234 IEDLIQKQGGTISSGVTKKIDYLVIGTLSSRDWRFSSHGRKIEKAVTYRDDGAQIKIITE 293 Query: 712 EQFLFLL 718 E + L Sbjct: 294 EMLIEAL 300 >gi|406360|gb|AAD12433.1| homology to DNA ligase M36417 [Mycoplasma genitalium] Length = 98 Score = 69.4 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 10/97 (10%) Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 D L D+I + + R + LGI+HVG +A++LA ++ + + Sbjct: 6 DKLFNKLVDNIENSKQKGMARLLTGLGIKHVGNVLAKNLANHFKNIKALQHA-------- 57 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 +LI + VG +A+++ ++ +P ++ +E L Sbjct: 58 --SLENLISLNDVGITVAESLYNWFHDPNHLQLIEQL 92 >gi|237785374|ref|YP_002906079.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM 44385] gi|237758286|gb|ACR17536.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM 44385] Length = 555 Score = 69.4 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 42/94 (44%), Gaps = 7/94 (7%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + + + + K + TG + + + + + Q G V +++KT +++ G+ Sbjct: 460 DIPETNTDADPNGPLFGKNVTLTGEFSPLDKGQLWQAIAQAGGTVGKNVTKKTTLLVCGE 519 Query: 693 --NPGSKLEKAQQLG-----VKIMNEEQFLFLLQ 719 SK ++A++L ++I N+ Q L L Sbjct: 520 WNGKTSKQKRAEELQEKGQEIEIWNQGQLLDALD 553 >gi|330828876|ref|YP_004391828.1| NAD-dependent DNA ligase [Aeromonas veronii B565] gi|328804012|gb|AEB49211.1| NAD-dependent DNA ligase [Aeromonas veronii B565] Length = 303 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 92/280 (32%), Gaps = 47/280 (16%) Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 + + L D ++ + + +L ++ + Sbjct: 22 KQLNNLMGILDGIIADSLIDEQEILYLDTWLKESASLNGWIFRELREMVANVLQDGKLCE 81 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK-----------------YYLSYQN 579 + +E + G+ E + L + +YLS+ Sbjct: 82 EEKVHLMSALPRLMETYRHLPGVDFYSEESDKLLLEGLCQGLMGDQQLSDDEIHYLSWWM 141 Query: 580 FAQEINNIIAHNNDDWLSLIRV--PLVGDIIAQ-------AIVEFYQNPRNICAVEALLK 630 + + ++ R+ + I A+ ++ F NP AV + Sbjct: 142 KQNSMLRAHYPGKQLYQTVERILLDGI--ITAEEREELQQQLMLFIGNPFEQGAVTGMAT 199 Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690 +++ S + + + + FTG R + +E LGA +++K D +I+ Sbjct: 200 KLAISNSEIDT-----LYDCTVCFTGMFLSGTRRQCEETALLLGATPQDSVTQKLDYLII 254 Query: 691 GD---------NPGSKLEKA---QQLG--VKIMNEEQFLF 716 G+ + G K+EKA Q+ G V+I+ EE +L Sbjct: 255 GELSSRDWRFSSYGRKIEKAMLLQEKGHSVRIVTEEAWLA 294 >gi|326789827|ref|YP_004307648.1| exonuclease RNase T and DNA polymerase III [Clostridium lentocellum DSM 5427] gi|326540591|gb|ADZ82450.1| Exonuclease RNase T and DNA polymerase III [Clostridium lentocellum DSM 5427] Length = 305 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 16/90 (17%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV----------GDN 693 S + + ++FTGTL + R A + V +G + + + +++ G+ Sbjct: 217 SHPLYDMTVIFTGTLSSMLRRDAMQKVVDVGGHCKDTVGKSANYLVIGIQDYSRFVDGEK 276 Query: 694 PGSKLEKAQQL-----GVKIMNEEQFLFLL 718 SKL+KA+ L ++I++E FL +L Sbjct: 277 -SSKLKKAELLISEGYDLEIIDESTFLQML 305 >gi|218547976|ref|YP_002381767.1| hypothetical protein EFER_0581 [Escherichia fergusonii ATCC 35469] gi|218355517|emb|CAQ88128.1| conserved hypothetical protein from phage origin [Escherichia fergusonii ATCC 35469] Length = 306 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 20/124 (16%) Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +A+V+F V+ L + +G + +E K TGT +R + Sbjct: 184 KALVDFTGCDLESGVVDGLATRLPIDVGASIE-----LEGKTYCLTGTFVAGKRAVVENL 238 Query: 670 VTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQQL------GVKIMNEEQF 714 + G +S+ +++K D +++G + G K+EKA +KI++EE Sbjct: 239 IKNAGGNISSGITQKLDFLVIGTLSSRDWKFSSHGRKIEKAISYRDDNGAKLKIISEEML 298 Query: 715 LFLL 718 L Sbjct: 299 FDAL 302 >gi|227892034|ref|ZP_04009839.1| possible DNA polymerase III subunit epsilon [Lactobacillus salivarius ATCC 11741] gi|227866144|gb|EEJ73565.1| possible DNA polymerase III subunit epsilon [Lactobacillus salivarius ATCC 11741] Length = 95 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 14/88 (15%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV---------GDNPGS 696 +NK +VFTG+LQ + R A E + G +V +S++TD +++ + Sbjct: 8 TFKNKCVVFTGSLQSMLRKDAIEKINAAGGIVKNYVSKETDYLVIAPRQLDMFEEERKSK 67 Query: 697 KLEKAQQLG-----VKIMNEEQFLFLLQ 719 K A+++ +KI++EE+FL +L+ Sbjct: 68 KQIAAEKINMNGGEIKIISEEKFLSMLK 95 >gi|293433432|ref|ZP_06661860.1| hypothetical protein ECCG_01557 [Escherichia coli B088] gi|291324251|gb|EFE63673.1| hypothetical protein ECCG_01557 [Escherichia coli B088] gi|324115563|gb|EGC09502.1| hypothetical protein ERBG_04476 [Escherichia coli E1167] Length = 296 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 20/124 (16%) Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +A+V+F V+ L + +G + +E K TGT +R + Sbjct: 174 KALVDFTGCDLESGVVDGLATRLPIDVGASIE-----LEGKTYCLTGTFVAGKRAVVENL 228 Query: 670 VTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQQL------GVKIMNEEQF 714 + G +S+ +++K D +++G + G K+EKA +KI++EE Sbjct: 229 IKNAGGNISSGITQKLDFLVIGTLSSRDWKFSSHGRKIEKAISYRDDNGAKLKIISEEML 288 Query: 715 LFLL 718 L Sbjct: 289 FDAL 292 >gi|306819092|ref|ZP_07452806.1| DNA-directed DNA polymerase III epsilon subunit [Mobiluncus mulieris ATCC 35239] gi|304648068|gb|EFM45379.1| DNA-directed DNA polymerase III epsilon subunit [Mobiluncus mulieris ATCC 35239] Length = 305 Score = 68.7 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 19/110 (17%) Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 + L E I + + +E +++VFTGTL+ +R ++ V G L+++T Sbjct: 200 DQLAAEELIKIYGNTRT----LEGERVVFTGTLKHGRRADVEQLVLAAGGATDKNLTKQT 255 Query: 686 DIIIV----------GDNPGSKLEKAQQL---G--VKIMNEEQFLFLLQQ 720 +++V G + KL KA QL G +++++EE+F L Sbjct: 256 TLLVVGIPNPSAWKEGTSASRKLMKASQLRDSGSPIEVISEEEFFNRLSD 305 >gi|269977446|ref|ZP_06184418.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1] gi|269934362|gb|EEZ90924.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1] Length = 303 Score = 68.7 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 19/110 (17%) Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 + L E I + + +E +++VFTGTL+ +R ++ V G L+++T Sbjct: 198 DQLAAEELIKIYGNTRT----LEGERVVFTGTLKHGRRADVEQLVLAAGGATDKNLTKQT 253 Query: 686 DIIIV----------GDNPGSKLEKAQQL---G--VKIMNEEQFLFLLQQ 720 +++V G + KL KA QL G +++++EE+F L Sbjct: 254 TLLVVGIPNPSAWKEGTSASRKLMKASQLRDSGSPIEVISEEEFFNRLSD 303 >gi|329570556|gb|EGG52279.1| hypothetical protein HMPREF9520_02996 [Enterococcus faecalis TX1467] Length = 106 Score = 68.7 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 14/89 (15%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-------DNP--GSK 697 + N+++VFTGTLQ++ R + V L + ++ KT+ ++ G D+ K Sbjct: 10 LTNQRVVFTGTLQQMTRTQTDGLVHSLNGHCQSSVTSKTNFLVCGQYSKSLFDDSLYTKK 69 Query: 698 LEKAQQL-----GVKIMNEEQFLFLLQQY 721 + A+ L + I++E +F L+ Q Sbjct: 70 EQTARDLIALGHEITILSEVEFYALISQQ 98 >gi|309810273|ref|ZP_07704115.1| exonuclease [Dermacoccus sp. Ellin185] gi|308435765|gb|EFP59555.1| exonuclease [Dermacoccus sp. Ellin185] Length = 534 Score = 68.3 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 15/105 (14%) Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 ++ + + S + + +VFTG L + R A + V G + ++KT++++ Sbjct: 207 AALALPDANPDADPSGYLYGRTVVFTGALMSMTRQMAWDAVADAGGQPAPTTTKKTNVLV 266 Query: 690 VGD-NPGS---------KLEKA---QQLG--VKIMNEEQFLFLLQ 719 +GD NP S K KA Q G +++M E FL +L Sbjct: 267 IGDFNPASLRPRANVSGKAAKAFALQDKGQDIELMTEADFLQVLD 311 >gi|123966756|ref|YP_001011837.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str. MIT 9515] gi|123201122|gb|ABM72730.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str. MIT 9515] Length = 249 Score = 68.3 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 58/308 (18%), Positives = 100/308 (32%), Gaps = 64/308 (20%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 LE+ + + D+ Y + +I D +D L++ + + P Sbjct: 5 LEKNVKHLDEQY-RIGNALISDKAFDQLEKNLLRTDPQCDYFNQKNNLLLP--------- 54 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 SL E+ +F+ + + + +++PKIDG I I Y Sbjct: 55 -------------SLAN----ENHIEFLASLLK--------NTRLSIQPKIDGCAIAINY 89 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 GKF A R +G DV++ I+ I +P L + +VRGE+Y Sbjct: 90 INGKFNKAITR----TGFDVTSKIKKIKDVPSRLPIQR--DFQVRGELYSPN---QTPYF 140 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263 R A S +F + QYE L ++ Sbjct: 141 SQKITSEFLNNKKRIAKS--------------FSFCCFQILNGR----LNQYETLNYLKK 182 Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG-ERARSP 322 GF + N + + + Y DG+V K++ LQ ++ Sbjct: 183 CGFNTPHSYFT-NFTSQVELFRKRWLDGKIFSKYPTDGIVIKINSRKLQLLRETNLSKYN 241 Query: 323 RWMISHKF 330 W + K Sbjct: 242 EWQYAIKK 249 >gi|315223236|ref|ZP_07865097.1| BRCA1 domain protein [Streptococcus anginosus F0211] gi|315187668|gb|EFU21422.1| BRCA1 domain protein [Streptococcus anginosus F0211] Length = 100 Score = 67.9 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 14/89 (15%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGS 696 ++ +KK+V TG+L+ + R + ++ GA V +S +TDI+IVG D Sbjct: 9 KLSDKKIVITGSLRPMTREEVILFLKDQGATVQGFISAQTDILIVGHKQLDLFQVDKRSK 68 Query: 697 KLEKAQQL-----GVKIMNEEQFLFLLQQ 720 K E A + +++EE+F ++++ Sbjct: 69 KYEAALSRIAEGQAITLLSEEEFFQIVKK 97 >gi|34764323|ref|ZP_00145155.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27885905|gb|EAA23249.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 89 Score = 67.9 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 6/80 (7%) Query: 53 RRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFI 111 ++ + +P + P +G + KV H+ P LSL +NI ++ FI Sbjct: 5 KKIGKLRRKYPQYKEI---SSPTTSVGASLKENKFKKVEHTHPMLSLANSYNIGEIVDFI 61 Query: 112 TRIYRFWQKKDDNSIFFTLE 131 RI + K+ + + LE Sbjct: 62 ERIKKKITKE--QELKYCLE 79 >gi|255724588|ref|XP_002547223.1| activator 1 95 kDa subunit [Candida tropicalis MYA-3404] gi|240135114|gb|EER34668.1| activator 1 95 kDa subunit [Candida tropicalis MYA-3404] Length = 695 Score = 67.9 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLF 716 + + R A++ Q GA V+ +S +T ++++G G SK++K QL +K ++E F+ Sbjct: 1 MPNLDRTTAEQTAKQYGANVTKSISGRTSLVVLGAEAGPSKVKKINQLKIKAIDEAGFIK 60 Query: 717 LLQ 719 LL+ Sbjct: 61 LLE 63 >gi|297194325|ref|ZP_06911723.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486] gi|297152225|gb|EFH31608.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486] Length = 658 Score = 67.9 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 4/80 (5%) Query: 644 SSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPGS-KLEK 700 + + K+ TG + R + G V +SR T +++ D + GS K + Sbjct: 222 GGPLVQGMKIAVTGP-TAMSRPELVARAVAAGLNVMGSVSRHTGVLVTNDRSSGSAKARR 280 Query: 701 AQQLGVKIMNEEQFLFLLQQ 720 A GV +++E++FL LL+ Sbjct: 281 AVAEGVPVIDEQEFLRLLED 300 >gi|301299722|ref|ZP_07205973.1| conserved hypothetical protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852696|gb|EFK80329.1| conserved hypothetical protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 89 Score = 67.5 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 14/88 (15%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV---------GDNPGS 696 +NK +VFTG+LQ + R A E + G +V +SR+TD +++ + Sbjct: 2 TFKNKCVVFTGSLQSMLRKDAIEKINAAGGIVKNYVSRETDYLVIAPRQLDMFEEERKSK 61 Query: 697 KLEKAQQLG-----VKIMNEEQFLFLLQ 719 K A+++ +KI++EE+FL +L+ Sbjct: 62 KQIAAEKINMNGGEIKIISEEKFLSMLK 89 >gi|295397429|ref|ZP_06807516.1| DNA polymerase III [Aerococcus viridans ATCC 11563] gi|294974330|gb|EFG50070.1| DNA polymerase III [Aerococcus viridans ATCC 11563] Length = 314 Score = 67.5 bits (163), Expect = 9e-09, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 41/121 (33%) Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 VE L E S + NK +VF+G L + R +A + GA++ + Sbjct: 210 QIKVEDLKAETSDFNPM------HPLFNKTIVFSGDLDNMSREEAMQASLNKGAILGKSV 263 Query: 682 SRKTDIIIV-----------------------GDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + KTD +IV G+ +KI++E+ F LL Sbjct: 264 TLKTDYLIVSQSDLNKQKKTSKFKKAEEYANRGEK------------IKIISEKIFKQLL 311 Query: 719 Q 719 + Sbjct: 312 E 312 >gi|319440291|ref|ZP_07989447.1| hypothetical protein CvarD4_00856 [Corynebacterium variabile DSM 44702] Length = 287 Score = 67.1 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 42/87 (48%), Gaps = 7/87 (8%) Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKL 698 + + + + TG + ++ + + + G V +++KT ++++G D+ SK Sbjct: 185 ADADGPVFGQNVTVTGDFEPYEKGEVWDMIAAAGGTVGKNVTKKTTVLVLGTWDSVTSKE 244 Query: 699 EKAQQL-----GVKIMNEEQFLFLLQQ 720 ++A++L +++ +FL + + Sbjct: 245 KRARELQEKGQDIQLWTFAEFLEKVGR 271 >gi|294656132|ref|XP_458382.2| DEHA2C15994p [Debaryomyces hansenii CBS767] gi|199430883|emb|CAG86464.2| DEHA2C15994p [Debaryomyces hansenii] Length = 915 Score = 67.1 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 PS E + + ++FTG L +++R A+ + GA V+ +S KT ++++G Sbjct: 202 PSGEELEIPEAQPNCLSGLTMIFTGILPRLERTVAENLAKKYGAKVTKSISGKTSLVVIG 261 Query: 692 DNPG 695 + G Sbjct: 262 EEAG 265 >gi|33601305|ref|NP_888865.1| hypothetical protein BB2322 [Bordetella bronchiseptica RB50] gi|33575741|emb|CAE32818.1| hypothetical protein BB2322 [Bordetella bronchiseptica RB50] Length = 224 Score = 66.7 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 14/80 (17%) Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NP-------GSKLEKA 701 FTG R + V + G + +++K D +++G+ NP G K++KA Sbjct: 141 TFCFTGKFTSGTRDWCSQQVVERGGSSLSNVTKKLDYLVIGELGNPDWLHSTFGLKIKKA 200 Query: 702 ---QQLGV--KIMNEEQFLF 716 + GV +I++E+ + Sbjct: 201 VDYRSSGVALRIISEQAWYE 220 >gi|33595923|ref|NP_883566.1| hypothetical protein BPP1254 [Bordetella parapertussis 12822] gi|33566002|emb|CAE36556.1| hypothetical protein BPP1254 [Bordetella parapertussis] Length = 224 Score = 66.7 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 14/80 (17%) Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NP-------GSKLEKA 701 FTG R + V + G + +++K D +++G+ NP G K++KA Sbjct: 141 TFCFTGKFTSGTRDWCSQQVVERGGSSLSNVTKKLDYLVIGELGNPDWLHSTFGLKIKKA 200 Query: 702 ---QQLGV--KIMNEEQFLF 716 + GV +I++E+ + Sbjct: 201 VDYRSSGVALRIISEQAWYE 220 >gi|320582361|gb|EFW96578.1| Replication factor C subunit [Pichia angusta DL-1] Length = 804 Score = 66.7 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 26/49 (53%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695 + +VFTG L I R + ++ GA V+ +S KT ++++G G Sbjct: 117 LNGLTIVFTGILPTIDRDECVRIASKYGAKVTKSISGKTSLVVIGHEAG 165 >gi|238898092|ref|YP_002923773.1| NAD-dependent DNA ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465851|gb|ACQ67625.1| NAD-dependent DNA ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 294 Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 15/85 (17%) Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKL 698 K + TG +R ++ + + GA V +++K D +IVG + G K+ Sbjct: 206 SGKTVCLTGEFIYGKRSVCEQEIIRQGANVIGNVTKKLDYLIVGTMSSKNWRYTSHGRKI 265 Query: 699 EKAQ----QLGVK--IMNEEQFLFL 717 EKA + G+ I+NEEQ+ Sbjct: 266 EKAVHYRDEKGIPLKIINEEQWQDF 290 >gi|307330749|ref|ZP_07609886.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu 4113] gi|306883641|gb|EFN14690.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu 4113] Length = 328 Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 3/82 (3%) Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKL 698 + ++ ++ F+G + R ++ + G V+ +SR T +++ D +P SK Sbjct: 239 EPGGQLVQGMRVAFSGD-TSVDRELLEDRAIEAGLHVATSVSRLTSVLVTNDPDSPTSKT 297 Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720 KA+ G +++E F+ LLQ Sbjct: 298 AKARSFGTPVIDEAAFMQLLQD 319 >gi|300175670|emb|CBK20981.2| unnamed protein product [Blastocystis hominis] Length = 344 Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 8/59 (13%) Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNP--------GSKLEKAQQLGVKIMNEEQFLFLL 718 E +++ G + + +S KT+ ++VG GSK +KA + V+I+NE++ L ++ Sbjct: 3 ELISRYGGIERSAVSGKTNYLVVGFEMEDGRPITEGSKYKKAVEKNVRIINEDELLAMI 61 >gi|303290318|ref|XP_003064446.1| predicted protein [Micromonas pusilla CCMP1545] gi|226454044|gb|EEH51351.1| predicted protein [Micromonas pusilla CCMP1545] Length = 370 Score = 66.0 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 9/66 (13%) Query: 647 IENKKLVFTGTLQ--------KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SK 697 + K +V TG + + KA+ Q G V+ +S +TD+++VG PG SK Sbjct: 224 LAGKTIVLTGVFPELGGGCGLNLGKDKARRLCEQFGGRVTTAVSGRTDLLLVGSEPGASK 283 Query: 698 LEKAQQ 703 + KA+ Sbjct: 284 VAKARS 289 >gi|149178535|ref|ZP_01857123.1| probable O-linked GlcNAc transferase [Planctomyces maris DSM 8797] gi|148842650|gb|EDL57025.1| probable O-linked GlcNAc transferase [Planctomyces maris DSM 8797] Length = 421 Score = 66.0 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 14/87 (16%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP------GS---K 697 ++ +++VFTGTL + KA E+V + G + +SR+T +++VG+ GS Sbjct: 19 LQGERVVFTGTLASMTHQKAGEFVEEHGGQAAQHVSRQTTLLVVGEEGWPLEADGSPSVN 78 Query: 698 LEKAQQL---G--VKIMNEEQFLFLLQ 719 L AQ+L G ++I+ E +L L++ Sbjct: 79 LTHAQELIAEGVAIQIIKESDWLALIE 105 >gi|83646824|ref|YP_435259.1| NAD-dependent DNA ligase [Hahella chejuensis KCTC 2396] gi|83634867|gb|ABC30834.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Hahella chejuensis KCTC 2396] Length = 202 Score = 66.0 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 25/126 (19%) Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS-----------EIENKKLVFTGTLQKIQRH 664 N + + L K E +S + + +FTG R Sbjct: 73 LDNEESSELLSVLRKISGDESYIGEVAKASRLPIIEPMPPITFQGRSFLFTGVCALGTRE 132 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKA---QQLGVK--IMN 710 + QE G V++ +++ D +++G +N G K+EKA + GV I+ Sbjct: 133 QCQEATEARGGVIAKNVTKSLDYLVIGTYVTDSWVHENFGRKIEKAMTYRDSGVPVVIIT 192 Query: 711 EEQFLF 716 E+ + Sbjct: 193 EQHWAQ 198 >gi|4204105|gb|AAD10576.1| Siginificant homology to DNA ligase M74792 [Mycoplasma genitalium] Length = 50 Score = 65.6 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%) Query: 91 HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 H+ P LSLE ++ +++ FI I + ++ F +EPKIDG I++ Sbjct: 3 HNSPMLSLENAFSTKEIANFIDNI----NFQTNSKNEFVVEPKIDGVSISLT 50 >gi|227548945|ref|ZP_03978994.1| DNA polymerase III epsilon subunit [Corynebacterium lipophiloflavum DSM 44291] gi|227078970|gb|EEI16933.1| DNA polymerase III epsilon subunit [Corynebacterium lipophiloflavum DSM 44291] Length = 472 Score = 65.2 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 7/93 (7%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + + + +S + + TG + + + + GA V +++KT I+I G+ Sbjct: 372 TIPEPDPQADPNSPLYGHNVTLTGEFEPFDKGQLWSGIAAQGAQVGKNVTKKTTILITGE 431 Query: 693 --NPGSKLEKAQQL-----GVKIMNEEQFLFLL 718 SK ++A++L ++I + EQ L L Sbjct: 432 WATMTSKEKRARELMDKGQDIQIWSAEQLLDAL 464 >gi|257082986|ref|ZP_05577347.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|256991016|gb|EEU78318.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] Length = 98 Score = 65.2 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 14/88 (15%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----D-----NPGSK 697 +EN+ VFTGTL + R +AQ + L +++KT ++ G D +P K Sbjct: 2 LENEYFVFTGTLTTMTRRQAQSIIIGLKGHNQNAVTKKTTRLVTGYFPIDLIKGYSPSHK 61 Query: 698 LEKAQQLG-----VKIMNEEQFLFLLQQ 720 + +A+Q + IM E++F+ L Q Sbjct: 62 ISEAKQSKRKGQRIMIMTEKEFIEFLAQ 89 >gi|27922874|gb|AAO25527.1| DNA ligase [Paramecium aurelia] Length = 143 Score = 65.2 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 20/144 (13%) Query: 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148 V H + + K+ + L ++ W ++PK+DG +T+ Y GK Sbjct: 20 VMHPVAHTGVRKMVDKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKL 68 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208 A RG+G GED + + I +P+ +S ++GE+++ + Sbjct: 69 NKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREG--------HIQ 119 Query: 209 GRKPYANPRNAASGILRRLNPTDI 232 + N R +G++ R + +D Sbjct: 120 QQMGGINARAKVAGLMXRQDDSDT 143 >gi|325963798|ref|YP_004241704.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease [Arthrobacter phenanthrenivorans Sphe3] gi|323469885|gb|ADX73570.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Arthrobacter phenanthrenivorans Sphe3] Length = 334 Score = 65.2 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 50/108 (46%), Gaps = 24/108 (22%) Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 +E + + + + + +VFTG L + R +A++ +GA + ++ +T +++ Sbjct: 223 EEGANPLPNPDAEPGHPLYGQTVVFTGQLA-MGRPEAKKRSADVGARPESRVTGRTTVLV 281 Query: 690 VGDN-----------PGSKLEKAQ---QLG-----VKIMNEEQFLFLL 718 VGD G KA+ +L +++++E +FL ++ Sbjct: 282 VGDGFVASDLRSGRLTG----KARRVLELHERGQAIEVLSEGEFLQMV 325 >gi|328463820|gb|EGF35363.1| DNA polymerase III PolC [Lactobacillus helveticus MTCC 5463] Length = 210 Score = 64.8 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + + + ++ +K++ TG L R + + + +G + TD IVG Sbjct: 115 DIAGDSTKNDKNNIFYDKRVSATGKLNAYTRREVGQMINDIGGHFQMNPGKTTDYFIVGK 174 Query: 693 ---NPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722 N KLEKA++L VKI++E+ FL ++ Y Sbjct: 175 LKGNTSHKLEKAEKLPNVKIIHEDDFLDMVAGYE 208 >gi|119718032|ref|YP_924997.1| exonuclease, RNase T and DNA polymerase III [Nocardioides sp. JS614] gi|119538693|gb|ABL83310.1| Exonuclease, RNase T and DNA polymerase III [Nocardioides sp. JS614] Length = 405 Score = 64.8 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 4/71 (5%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIM 709 +VFTG L + R + + Q G +++ T +++ D + K KA+ G+ ++ Sbjct: 335 VVFTGELS-VPRDQLIDLAQQAGLK-HGGVNKSTKLVVAADPDSQSGKAAKARSYGIPVV 392 Query: 710 NEEQFLFLLQQ 720 E F +L Sbjct: 393 TEAAFARMLAD 403 >gi|301109773|ref|XP_002903967.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262096970|gb|EEY55022.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 510 Score = 64.8 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 +VFTGTL + R +A Q G VV A L++ + +I G G K+E+A++LGV + Sbjct: 4 VVFTGTLCQ-PRKEATAEAEQYGYVVGARLTKTSSFLICGAKVGAKKMEEAEKLGVATLT 62 Query: 711 EEQFLFLLQ 719 E ++ L Sbjct: 63 ELEWREKLA 71 >gi|62390951|ref|YP_226353.1| DNA polymerase III epsilon subunit or related 3'-5' exonuclease [Corynebacterium glutamicum ATCC 13032] gi|41326290|emb|CAF20452.1| DNA polymerase III epsilon subunit or related 3'-5' exonuclease [Corynebacterium glutamicum ATCC 13032] Length = 476 Score = 64.8 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 42/89 (47%), Gaps = 7/89 (7%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + + SS + + + TG + ++ + + GA++ +++KT I++ G Sbjct: 376 VIPDPNPDADPSSILYGQNVTLTGDFEPYEKGALWQRIADQGALIGKNVTKKTTILVAGP 435 Query: 693 NP--GSKLEKAQQLG-----VKIMNEEQF 714 SK ++A++L ++I +E+Q Sbjct: 436 WATITSKQKRAEELKEKGQDIQIWDEKQL 464 >gi|23308895|ref|NP_601316.2| DNA polymerase III epsilon subunit [Corynebacterium glutamicum ATCC 13032] gi|21324886|dbj|BAB99509.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases [Corynebacterium glutamicum ATCC 13032] Length = 381 Score = 64.8 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 42/89 (47%), Gaps = 7/89 (7%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + + SS + + + TG + ++ + + GA++ +++KT I++ G Sbjct: 281 VIPDPNPDADPSSILYGQNVTLTGDFEPYEKGALWQRIADQGALIGKNVTKKTTILVAGP 340 Query: 693 NP--GSKLEKAQQLG-----VKIMNEEQF 714 SK ++A++L ++I +E+Q Sbjct: 341 WATITSKQKRAEELKEKGQDIQIWDEKQL 369 >gi|261252670|ref|ZP_05945243.1| hypothetical protein VIA_002694 [Vibrio orientalis CIP 102891] gi|260936061|gb|EEX92050.1| hypothetical protein VIA_002694 [Vibrio orientalis CIP 102891] Length = 125 Score = 64.8 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 9/102 (8%) Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG--TLQKIQRHKAQEYVTQLGAV 676 I + R +K V S ++ + FTG T +K ++ E + Sbjct: 18 EEEISQLSDAEAWQIIYSTRAKKVVDSRLQ---VCFTGFGTTEK---NELTEMASANNFN 71 Query: 677 VSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717 V +++K D ++ G N G KLEKA+ GV+++ +QF L Sbjct: 72 VVKSVTKKLDFLVGGVNAGPKKLEKAEMQGVQVLTADQFKSL 113 >gi|29374711|ref|NP_813863.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583] gi|227555735|ref|ZP_03985782.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22] gi|256761903|ref|ZP_05502483.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|29342169|gb|AAO79935.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583] gi|227175140|gb|EEI56112.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22] gi|256683154|gb|EEU22849.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|315573941|gb|EFU86132.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecalis TX0309B] gi|315581892|gb|EFU94083.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecalis TX0309A] Length = 289 Score = 64.8 bits (156), Expect = 6e-08, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTL--QKIQRHKAQEYVTQLGAVVSAILSRKTD 686 LK+ S + + + E V TG K R + + + Q G VS+ LS KTD Sbjct: 175 LKKSSLDSFELDDDTTPFFEGMSFVVTGAFDDSKYNRKQIETLIKQHGGRVSSSLSAKTD 234 Query: 687 IIIVG 691 I G Sbjct: 235 YFIQG 239 >gi|237803899|ref|ZP_04591484.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str. 1_6] gi|237805538|ref|ZP_04592242.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025879|gb|EGI05935.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str. 1_6] gi|331026645|gb|EGI06700.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str. 1_6] Length = 112 Score = 64.4 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 18/125 (14%) Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL-I 599 + +LE I L I VG A LA+ + + + DWL + Sbjct: 1 GAEFAASTTLEGLIDKLHIPLVGPGAALKLAEKFGTLEAIIGA----------DWLDMRQ 50 Query: 600 RVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENKKLVFT 655 +P + A+++ +F+ + N A+EA LK+ +K V + + V T Sbjct: 51 ALP---EKQAKSVRDFFDDSANAERARAIEAQLKDFGMHWRSEKKTVEGLPLAGQTWVLT 107 Query: 656 GTLQK 660 G+L++ Sbjct: 108 GSLER 112 >gi|146322254|ref|YP_001174711.1| hypothetical protein pGdh442_p14 [Lactococcus lactis] gi|145968745|gb|ABQ00023.1| hypothetical protein [Lactococcus lactis] Length = 98 Score = 64.4 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 14/88 (15%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSK 697 +EN+ VFTGTL + R +AQ + L +++KT ++ G+ P K Sbjct: 2 LENEYFVFTGTLTTMTRKQAQSIIIGLKGHNQNAVTKKTTRLVTGNFPIDLIKGYHHSHK 61 Query: 698 LEKAQQLG-----VKIMNEEQFLFLLQQ 720 + +A+Q + IM E++F+ L Q Sbjct: 62 ISEAKQSKRKGQRIMIMTEKEFIEFLAQ 89 >gi|76574907|gb|ABA47377.1| conserved hypothetical protein [Lactococcus lactis] Length = 112 Score = 64.4 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 14/88 (15%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSK 697 +EN+ VFTGTL + R +AQ + L +++KT ++ G+ P K Sbjct: 16 LENEYFVFTGTLTTMTRKQAQSIIIGLKGHNQNAVTKKTTRLVTGNFPIDLIKGYHHSHK 75 Query: 698 LEKAQQLG-----VKIMNEEQFLFLLQQ 720 + +A+Q + IM E++F+ L Q Sbjct: 76 ISEAKQSKRKGQRIMIMTEKEFIEFLAQ 103 >gi|116671124|ref|YP_832057.1| exonuclease, RNase T and DNA polymerase III [Arthrobacter sp. FB24] gi|116611233|gb|ABK03957.1| Exonuclease, RNase T and DNA polymerase III [Arthrobacter sp. FB24] Length = 337 Score = 64.4 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 48/108 (44%), Gaps = 24/108 (22%) Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 +E + + + + +VFTG L + R +A+ + GA + ++ +T +++ Sbjct: 224 EEGANPAPNSDAEPGHPLFGQTVVFTGELA-MPRPEAKVLSAEFGAQPESRVTGRTTVLV 282 Query: 690 VGDN-----------PGSKLEKAQ---QLG-----VKIMNEEQFLFLL 718 VGD G KA+ +L +++++E +FL ++ Sbjct: 283 VGDGFVASDLRSGRLTG----KARRVLELHERGQRIEVLSEGEFLQMV 326 >gi|239631939|ref|ZP_04674970.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526404|gb|EEQ65405.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 309 Score = 64.4 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 3/111 (2%) Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638 A+ + N +L + A+ + I L I Sbjct: 156 RLAKNKDFPEPLKNLKLPTLKEYFGISGSSHNALDD---CKTTITVYRHLRDNKLERIAP 212 Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 ++ ++E+ + TG I R++ + + G V + +S KTD ++ Sbjct: 213 VDRETTNELRGLRFAITGEFIGISRNEVETMIKLHGGRVISTVSSKTDYLV 263 >gi|213421873|ref|ZP_03354939.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 73 Score = 64.4 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 ++PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ Sbjct: 6 ELWVQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAV 64 Query: 187 VRGEVYISK 195 ++GE+++ + Sbjct: 65 LQGEIFLQR 73 >gi|296119762|ref|ZP_06838316.1| putative DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes DSM 20306] gi|295966916|gb|EFG80187.1| putative DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes DSM 20306] Length = 1149 Score = 64.0 bits (154), Expect = 8e-08, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 56/119 (47%), Gaps = 7/119 (5%) Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE-NKKLVFTGTLQKIQR 663 G + A+ I +++ ++ E+ + N ++ ++ TGT ++ R Sbjct: 282 GVVTAREIKTLESVAKSLNVDAKVVDEMLEQVSESPLNEPLQLSPGDRIALTGT-TEVSR 340 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS---KLEKAQQLGVKIMNEEQFLFLLQ 719 + T G +V +++ T +++ +PGS K ++A++L + I+NE +F LL Sbjct: 341 EEWNLRATAAG-LVVGEVAKNTKVLVA-SDPGSRNSKAQRARELNIPIVNETKFAALLN 397 >gi|306824811|ref|ZP_07458155.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433022|gb|EFM35994.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 93 Score = 64.0 bits (154), Expect = 8e-08, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 13/85 (15%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSK 697 + K +V TG+L+ + R ++ ++ GAVV + +S KTDI+++G D K Sbjct: 3 LTGKNIVITGSLRPLTREESIRFLESKGAVVQSYVSNKTDILVLGHKQLNLFDPDKRSKK 62 Query: 698 LEKAQQLGVKIMNEEQFLFLLQQYN 722 + A ++ ++E QF+ L + + Sbjct: 63 HDAA----LRRISEGQFITFLSEES 83 >gi|220913055|ref|YP_002488364.1| exonuclease RNase T and DNA polymerase III [Arthrobacter chlorophenolicus A6] gi|219859933|gb|ACL40275.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter chlorophenolicus A6] Length = 336 Score = 64.0 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 34/177 (19%) Query: 562 VGAEIARSLAKYYLSYQNFAQEINNII-AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 A SLA+ YLS + A + SL + G A+V +Q+ Sbjct: 165 ARRNGANSLAELYLSLGLVMPRQHAFDPAVDQLSKQSLTALAG-GSGNGAALVRPFQS-- 221 Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680 E + + + +VFTG L I R +A+ + GA + Sbjct: 222 ------GWPDEGLNPEPNPDAEPGHPLYGQTVVFTGQLS-IGRPEAKVRSAEAGARTESR 274 Query: 681 LSRKTDIIIVGDN-----------PGSKLEKAQ---QLG-----VKIMNEEQFLFLL 718 ++ +T +++VGD G KA+ +L +++++E +FL ++ Sbjct: 275 VTGRTTVLVVGDGFVAADLRSGRLTG----KARRVLELHDRGQAIEVLSEGEFLQMV 327 >gi|297161567|gb|ADI11279.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis BCW-1] Length = 324 Score = 63.7 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 3/76 (3%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQL 704 ++ ++ F+G I R ++ + G V+ +SR T +++ + SK+ KA+ Sbjct: 243 VQGMRVAFSGD-TSIDRELLEDQAIEAGLHVATSVSRLTSLLVTNDPEAATSKITKARSF 301 Query: 705 GVKIMNEEQFLFLLQQ 720 +++E F LL+ Sbjct: 302 DTPVIDEAAFTQLLRD 317 >gi|146279555|ref|YP_001169713.1| transposase [Rhodobacter sphaeroides ATCC 17025] gi|145557796|gb|ABP72408.1| Transposase and inactivated derivatives-like protein [Rhodobacter sphaeroides ATCC 17025] Length = 282 Score = 63.7 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 35/165 (21%) Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 +LA+++ +++ A G I+A+AI E +P L Sbjct: 132 NLARHFGITFQHHDALHDARAA--------------GLILARAIEETGHDPSE---WIRL 174 Query: 629 LKEVSPSIGRH---EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 + + + + + + + +VFTG L ++ R +A + Q GA V +++ T Sbjct: 175 CNQATRQDRQTLRRDGDGDGPLVGESIVFTGAL-QVPRREAADLAHQAGAAVEPNVTKGT 233 Query: 686 DIIIVGD---------NPGSKLEKAQQL-----GVKIMNEEQFLF 716 I++VGD + SK KA+ L ++I+ E F+ Sbjct: 234 TILVVGDQDIDKLAGHDKSSKHRKAEALIEAGQSLRILGEADFMR 278 >gi|154499224|ref|ZP_02037602.1| hypothetical protein BACCAP_03219 [Bacteroides capillosus ATCC 29799] gi|150272064|gb|EDM99290.1| hypothetical protein BACCAP_03219 [Bacteroides capillosus ATCC 29799] Length = 370 Score = 63.7 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 54/326 (16%), Positives = 98/326 (30%), Gaps = 46/326 (14%) Query: 27 EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-GPLNKIGGEMNLS 85 I+ Y +PI+ D+EY L R A P RS + P+ + Sbjct: 8 IIARWA---YSVGQPIMTDAEYTVLDRAMKAKYPQNPYCKRSWSSDPCPV-----ALLKE 59 Query: 86 LFKVTHSIPTLSL-------EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 P SL +K +I+ L I + +S+ + KIDG Sbjct: 60 FG-----YP--SLIKAVVLSDKTESIQSLNSLIEVRTAYEAMHAKHSVSY----KIDGWN 108 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I Y G+ + RG D SA +P + + V E + +F Sbjct: 109 IQASYYNGELINIQTRGRASDAMDASAVAPLLPKQ-----IPEMGRVLVVMECSVPDAEF 163 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 + + R A S L NP ++ HG+ ++ + + Sbjct: 164 AWFKET------FGVTSQRGAVSTALA--NPEKCLSHIAIHAHGVRCSNRV-----SDKF 210 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ GF + ++ + DGLV + + + + Sbjct: 211 DLLKSWGF-QVPMYAWVQNYQELMDQVKAFSDYKEQYGVPTDGLVVEGESTNALRICAWE 269 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDI 344 R ++ + + I Sbjct: 270 EPIYRSFVTGYAESYGPHSIAVQCTI 295 >gi|323446745|gb|EGB02801.1| hypothetical protein AURANDRAFT_68555 [Aureococcus anophagefferens] Length = 1440 Score = 63.7 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V G V+ +S KTDI+IVG PG SK+ KA+ V +M Sbjct: 1319 AMVESFGGRVTGAVSGKTDILIVGKEPGMSKVSKARAANVTLMT 1362 >gi|237745763|ref|ZP_04576243.1| predicted protein [Oxalobacter formigenes HOxBLS] gi|229377114|gb|EEO27205.1| predicted protein [Oxalobacter formigenes HOxBLS] Length = 221 Score = 63.3 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 2/71 (2%) Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGV 706 K ++FTG + R + + V Q+G V +S+ DI++ G N G K+++A LG+ Sbjct: 142 SGKGVLFTG-FKAADRAELEAMVPQIGWHVRKSVSQTVDIVVAGYNAGPKKVQQAIDLGI 200 Query: 707 KIMNEEQFLFL 717 ++++E+ F + Sbjct: 201 QVVSEKVFREM 211 >gi|221369901|ref|YP_002520997.1| Exonuclease [Rhodobacter sphaeroides KD131] gi|221162953|gb|ACM03924.1| Exonuclease [Rhodobacter sphaeroides KD131] Length = 293 Score = 63.3 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 18/127 (14%) Query: 609 AQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A A+V + E L+K P+ E + + + +VFTG L + R + Sbjct: 162 AAALVVLHAETHLNLTFEELIKPARKNHPAAITREGDPTGALSGSVVVFTGALS-MSREE 220 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDN-----PG----SKLEKAQQLG-----VKIMNE 711 A ++G V + ++ KT ++VGD G SK +A+++ ++I+ E Sbjct: 221 AAAAAARVGMDVKSSVTNKTTYLVVGDQDLNVLAGHTKSSKHRRAEEMQSAGHPIQIVGE 280 Query: 712 EQFLFLL 718 +F L+ Sbjct: 281 TEFRTLV 287 >gi|145296078|ref|YP_001138899.1| hypothetical protein cgR_2000 [Corynebacterium glutamicum R] gi|140845998|dbj|BAF54997.1| hypothetical protein [Corynebacterium glutamicum R] Length = 467 Score = 62.9 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 42/89 (47%), Gaps = 7/89 (7%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + + +S + + + TG + ++ + + GA++ +++KT I++ G Sbjct: 367 VIPDPNPDADPASILYGQNVTLTGDFEPYEKGALWQQIADQGALIGKNVTKKTTILVAGP 426 Query: 693 NP--GSKLEKAQQLG-----VKIMNEEQF 714 SK ++A++L ++I +E+Q Sbjct: 427 WATITSKQKRAEELKEKGQDIQIWDEKQL 455 >gi|288923046|ref|ZP_06417199.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f] gi|288345596|gb|EFC79972.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f] Length = 296 Score = 62.9 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 9/78 (11%) Query: 647 IENKKLVFTGTLQKIQRHK---AQEYVTQLGAVVSAILSRKTDIIIVGDN--PGSKLEKA 701 ++ ++VFTG R + + G V+A +SR+T +++ + K A Sbjct: 208 VQGMRVVFTG----PTRTERGALVDRAAAAGLEVTASVSRRTSLLVTNEKHGATRKARAA 263 Query: 702 QQLGVKIMNEEQFLFLLQ 719 QLG+ +E +FL LL+ Sbjct: 264 AQLGIPTRDEGEFLALLE 281 >gi|299142726|ref|ZP_07035855.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Prevotella oris C735] gi|298575755|gb|EFI47632.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Prevotella oris C735] Length = 175 Score = 62.9 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 7/107 (6%) Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIV 690 + P N ++ KK+V TG +R + + GA ++ +S+ T+I+I+ Sbjct: 63 LKPLSVDEVDNPNTPFCGKKIVITGQFDAFPKRDVLGKLLRLYGADINTAISKHTNIVIM 122 Query: 691 GDNPG-SKLEKAQQLG-----VKIMNEEQFLFLLQQYNTTLRIHDDD 731 G+ G K EK + L +++ NE Q L +YN ++D Sbjct: 123 GNAAGPKKKEKIKDLQGQGFPIEVFNEFQLLKTFDEYNIPYEKPNED 169 >gi|257784354|ref|YP_003179571.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469] gi|257472861|gb|ACV50980.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469] Length = 342 Score = 62.9 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 7/93 (7%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII--VG 691 + S+++ TG + + + + GA +S ++ KT+ +I G Sbjct: 250 IEKYTDKNTESTKLSGTVFCLTGVPCCMPKSDFLKMLITNGATLSERVTLKTNYLIDCSG 309 Query: 692 DNPGSKLEKAQQL----GVKIMNEEQFLFLLQQ 720 D K++ A++ G+KI++E+Q L +L+Q Sbjct: 310 DETT-KIKTARKYADRTGIKIISEQQMLEMLKQ 341 >gi|290986488|ref|XP_002675956.1| BRCT domain-containing protein [Naegleria gruberi] gi|284089555|gb|EFC43212.1| BRCT domain-containing protein [Naegleria gruberi] Length = 615 Score = 62.9 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 6/89 (6%) Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-- 693 + + S + + +GTL K +R + + + G S+ ++ T+ +I ++ Sbjct: 1 MVKKSNGKSGVLSSLVFCCSGTLSK-KRSDVESDIKKNGGKTSSSVTNSTNFLITTEHEA 59 Query: 694 ---PGSKLEKAQQLGVKIMNEEQFLFLLQ 719 P SK+ A+ V I++E+ + Sbjct: 60 RGIPTSKVNNAKAKDVPIVSEDFLWKCID 88 >gi|328464330|gb|EGF35747.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus MTCC 5462] Length = 47 Score = 62.9 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 19/35 (54%), Positives = 23/35 (65%) Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 TD++I GD GSKL KAQ L V IM+E L L+ Sbjct: 12 TDLVIAGDAAGSKLTKAQDLNVPIMDETALLTNLK 46 >gi|312958406|ref|ZP_07772927.1| NAD-dependent DNA ligase [Pseudomonas fluorescens WH6] gi|311287470|gb|EFQ66030.1| NAD-dependent DNA ligase [Pseudomonas fluorescens WH6] Length = 213 Score = 62.5 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 14/81 (17%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NP-GSKLEKAQ 702 VFTG + R Q V + G ++ +S+K ++VG + G+K+ KA Sbjct: 131 FVFTGVMAFGPRKDCQALVEERGGLIGGGVSKKVHYLVVGSVGNEQWRHSTYGTKIMKAV 190 Query: 703 QL-----GVKIMNEEQFLFLL 718 +L + I+ E + +L Sbjct: 191 ELREAGASIAIVGEGHWQKML 211 >gi|325268586|ref|ZP_08135216.1| NAD-dependent DNA ligase LigA [Prevotella multiformis DSM 16608] gi|324989114|gb|EGC21067.1| NAD-dependent DNA ligase LigA [Prevotella multiformis DSM 16608] Length = 206 Score = 62.5 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIV 690 + P +N ++ KK+V TG +R + + Q GA ++ +S+KTDI+I+ Sbjct: 94 LKPLSAEEVENPNTPFFGKKIVITGQFLAFPKRDVLGKLLKQYGADMNTSISKKTDIVIM 153 Query: 691 GDNPG 695 G G Sbjct: 154 GYAAG 158 >gi|116200486|ref|XP_001226055.1| hypothetical protein CHGG_10788 [Chaetomium globosum CBS 148.51] gi|88175502|gb|EAQ82970.1| hypothetical protein CHGG_10788 [Chaetomium globosum CBS 148.51] Length = 1409 Score = 62.1 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 5/81 (6%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----NPGSKLEKAQ 702 +E +V +GT + V LGA ++ ++ ++ + P K+ KA+ Sbjct: 17 LEGCTIVLSGTFPGATHATIKARVEALGATLATSVTGDATHLVATESDYKKPSPKVTKAK 76 Query: 703 QLGVKIMNEEQFLFLLQQYNT 723 L + I+ + +L +Q Sbjct: 77 SLDIHIVGLD-WLSACEQNGA 96 >gi|169794726|ref|YP_001712519.1| NAD-dependent DNA ligase [Acinetobacter baumannii AYE] gi|169147653|emb|CAM85516.1| hypothetical protein; putative NAD-dependent DNA ligase [Acinetobacter baumannii AYE] Length = 292 Score = 62.1 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 14/90 (15%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV--GDNP-------GS 696 E+ K + TG + + + ++ + G + L++ D +++ NP G Sbjct: 203 ELIGKTICLTGASARYSKAEWKKVIESQGGIFKDDLTKTVDYLVICNKGNPHWAHMSYGR 262 Query: 697 KLEKAQQL-----GVKIMNEEQFLFLLQQY 721 K E+A + ++I+ E+ F+ +L++ Sbjct: 263 KFEQALKWQKDGANIRILTEDDFVKVLEEN 292 >gi|90077296|dbj|BAE88328.1| unnamed protein product [Macaca fascicularis] Length = 452 Score = 62.1 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 21/45 (46%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 K + +E V TG L+ I+R +A+ + + G V+ + Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNV 441 >gi|258624897|ref|ZP_05719825.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258582895|gb|EEW07716.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 302 Score = 62.1 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 16/90 (17%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSK 697 + ++ FTG R + + GA V + +S++ D++++G G K Sbjct: 214 VSGLQICFTGKFFAGNRKSVESLAKEHGADVRSSVSKQLDLLVIGSMASRDWIHTSHGRK 273 Query: 698 LEKA----QQLG--VKIMNEEQFLFLLQQY 721 +E A +Q G KI+ E+ + L+ + Sbjct: 274 IE-AVINNRQYGSLTKILTEQAWFELIDKQ 302 >gi|51512055|gb|AAU05254.1| NAD-dependent DNA ligase subunit B [Enterobacteria phage T5] Length = 260 Score = 62.1 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 91/302 (30%), Gaps = 57/302 (18%) Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P+ CP C S++ C C AQ + +++F ++ Sbjct: 1 MMKIEIPTQCPSCGSKLDLVNG--------QLFCRNKSNCPAQSSKLIENFCTKMKLK-- 50 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 F + +++F L G + + Sbjct: 51 --------GFGPKTIEKLELTKISELFYLTEEDLVRAV------GSKVAAKLISELNTKV 96 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 R +I + SLGI +G A+ L++ S+Q+ Sbjct: 97 RGDIDFGSVLGSLGIPLIGEVAAKKLSQNCTSFQDVKA-------------------DG- 136 Query: 605 GDIIAQAIVEFYQNPRNICAVEAL---LKEVSPSIGRHEKNVSSEIE---NKKLVFTGTL 658 + + +P+ +E L + + + TG+L Sbjct: 137 --KAGENYKAWLNSPQGKDVIE-LPWKFSKGIKGAKAEVIITDGLVAQPNGITVCITGSL 193 Query: 659 QKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---PGSKLEKAQQLGVKIMNEEQF 714 Q R A Y+ LG V +++ +I D S +KA+ G++I++ ++ Sbjct: 194 QDFANRTDATNYLEGLGYTVKKSVTKDVKYLICEDESKRSSSSYKKAETNGIEILSIKEL 253 Query: 715 LF 716 L Sbjct: 254 LE 255 >gi|46401853|ref|YP_006945.1| NAD-dependent DNA ligase, subunit B [Enterobacteria phage T5] gi|45775031|gb|AAS77163.1| NAD-dependent DNA ligase, subunit B [Enterobacteria phage T5] Length = 259 Score = 61.7 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 46/301 (15%), Positives = 91/301 (30%), Gaps = 57/301 (18%) Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ CP C S++ C C AQ + +++F ++ Sbjct: 1 MKIEIPTQCPSCGSKLDLVNG--------QLFCRNKSNCPAQSSKLIENFCTKMKLK--- 49 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 F + +++F L G + + R Sbjct: 50 -------GFGPKTIEKLELTKISELFYLTEEDLVRAV------GSKVAAKLISELNTKVR 96 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 +I + SLGI +G A+ L++ S+Q+ Sbjct: 97 GDIDFGSVLGSLGIPLIGEVAAKKLSQNCTSFQDVKA-------------------DG-- 135 Query: 606 DIIAQAIVEFYQNPRNICAVEAL---LKEVSPSIGRHEKNVSSEIE---NKKLVFTGTLQ 659 + + +P+ +E L + + + TG+LQ Sbjct: 136 -KAGENYKAWLNSPQGKDVIE-LPWKFSKGIKGAKAEVIITDGLVAQPNGITVCITGSLQ 193 Query: 660 KI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---PGSKLEKAQQLGVKIMNEEQFL 715 R A Y+ LG V +++ +I D S +KA+ G++I++ ++ L Sbjct: 194 DFANRTDATNYLEGLGYTVKKSVTKDVKYLICEDESKRSSSSYKKAETNGIEILSIKELL 253 Query: 716 F 716 Sbjct: 254 E 254 >gi|254781196|ref|YP_003065609.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str. psy62] gi|254040873|gb|ACT57669.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str. psy62] Length = 119 Score = 61.7 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + +LS +A E+ L + +H YY+ P+ D YD + R DA+ FP+L Sbjct: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF-- 108 Query: 69 EDPNGPLNKIGG 80 D + P N +G Sbjct: 109 -DEDHPWNTVGY 119 >gi|294629410|ref|ZP_06707970.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14] gi|292832743|gb|EFF91092.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14] Length = 653 Score = 61.3 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 4/80 (5%) Query: 644 SSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GS-KLEK 700 + + K+ TG R + G + + +SR T ++ D GS K + Sbjct: 221 GGPLVQGMKIAVTGETAT-SRAELVARAVAAGLNIMSSVSRHTSALVTNDAASGSAKARR 279 Query: 701 AQQLGVKIMNEEQFLFLLQQ 720 A GV I++E FL LL + Sbjct: 280 AIAEGVPILDERTFLGLLSE 299 >gi|313608254|gb|EFR84261.1| DNA ligase [Listeria monocytogenes FSL F2-208] Length = 66 Score = 61.3 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 16/42 (38%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59 +K L + + YY P + D+EYD + I Sbjct: 5 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIE 46 >gi|326633002|ref|YP_004306591.1| NAD-dependent DNA ligase subunit B [Enterobacteria phage SPC35] gi|321272196|gb|ADW80088.1| NAD-dependent DNA ligase subunit B [Enterobacteria phage SPC35] Length = 259 Score = 61.3 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 46/300 (15%), Positives = 96/300 (32%), Gaps = 55/300 (18%) Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ CP C S++ C C AQ + +++F ++ Sbjct: 1 MKIEIPTQCPSCGSKLDLVNG--------QLFCRNKSNCPAQSSKLIENFCTKMKLK--- 49 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 F + +++F L G + + R Sbjct: 50 -------GFGPKTIEKLELTKISELFYLTEEDLVRAV------GSKVAAKLISELNTKVR 96 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 +I + SLGI +G A+ L++ S+ + ++V Sbjct: 97 GDIDFGSVLGSLGIPLIGEVAAKKLSQNCTSFHD-------------------VKVDG-- 135 Query: 606 DIIAQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEI----ENKKLVFTGTLQK 660 + + +P+ +E + + ++ E+ + TG+LQ Sbjct: 136 -KAGENYKAWLNSPQGKDVIELPWKFSTGIKGAKADIIITDELVAQPNGIAVCITGSLQD 194 Query: 661 I-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---PGSKLEKAQQLGVKIMNEEQFLF 716 R A Y+ LG V +++ +I D S +KA+ G++I++ ++ L Sbjct: 195 FANRTDATNYLESLGYTVKKSVTKDVKYLICEDESKRSSSSYKKAETNGIEILSIKELLE 254 >gi|254780131|ref|YP_003064544.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str. psy62] gi|254039808|gb|ACT56604.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str. psy62] gi|317120701|gb|ADV02524.1| DNA ligase [Liberibacter phage SC1] gi|317120744|gb|ADV02566.1| DNA ligase [Liberibacter phage SC2] gi|317120758|gb|ADV02579.1| DNA ligase [Liberibacter phage SC2] gi|317120805|gb|ADV02626.1| DNA ligase [Liberibacter phage SC1] gi|317120845|gb|ADV02666.1| DNA ligase [Candidatus Liberibacter asiaticus] Length = 119 Score = 61.3 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + +LS +A E+ L + +H YY+ P+ D YD + R DA+ FP+L Sbjct: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDDPLFTDGLYDRVSERLDALQEQFPELF-- 108 Query: 69 EDPNGPLNKIGG 80 D + P N +G Sbjct: 109 -DEDHPWNTVGY 119 >gi|149374650|ref|ZP_01892424.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Marinobacter algicola DG893] gi|149361353|gb|EDM49803.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Marinobacter algicola DG893] Length = 203 Score = 61.0 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 16/108 (14%) Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 + L K S I + E +FTGT R + E LG + +S Sbjct: 93 AEIGELAKTTSLPINEPLPEIE--FEGASFLFTGTCAFGTRKQCHEATEALGGAIVKNVS 150 Query: 683 RKTDIIIVG---------DNPGSKLEKA---QQLG--VKIMNEEQFLF 716 + + +++G + G K+EKA + G + I+ EE + Sbjct: 151 KNLNYLVLGTYVTDSWAHETFGRKIEKAVEYRDNGAPIVILTEEHWAE 198 >gi|259507628|ref|ZP_05750528.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens YS-314] gi|259164807|gb|EEW49361.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens YS-314] Length = 494 Score = 61.0 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 40/93 (43%), Gaps = 7/93 (7%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + + + + + + TG + ++ + + G V ++RKT I++ G Sbjct: 394 VIPDPNPDADPNGLLFGQNVTLTGDFEPYEKGALWQRIADQGGQVGKNVTRKTTILVAGP 453 Query: 693 NP--GSKLEKAQQLG-----VKIMNEEQFLFLL 718 SK ++A++L ++I +++Q L Sbjct: 454 WATITSKQKRAEELKEKGQDIQIWDDKQLFAAL 486 >gi|25028571|ref|NP_738625.1| putative DNA polymerase III epsilon subunit [Corynebacterium efficiens YS-314] gi|23493856|dbj|BAC18825.1| putative DNA polymerase III epsilon subunit [Corynebacterium efficiens YS-314] Length = 569 Score = 61.0 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 40/93 (43%), Gaps = 7/93 (7%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + + + + + + TG + ++ + + G V ++RKT I++ G Sbjct: 469 VIPDPNPDADPNGLLFGQNVTLTGDFEPYEKGALWQRIADQGGQVGKNVTRKTTILVAGP 528 Query: 693 NP--GSKLEKAQQLG-----VKIMNEEQFLFLL 718 SK ++A++L ++I +++Q L Sbjct: 529 WATITSKQKRAEELKEKGQDIQIWDDKQLFAAL 561 >gi|118616866|ref|YP_905198.1| DNA polymerase [Mycobacterium ulcerans Agy99] gi|118568976|gb|ABL03727.1| DNA polymerase [Mycobacterium ulcerans Agy99] Length = 500 Score = 61.0 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 4/73 (5%) Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLG 705 L TG++++ +R + + + Q G V L+R+T +++ D + K KA++ G Sbjct: 423 AGDVLCLTGSMRR-RRSEWEAELAQRGIEV-GSLTRRTRLLVAADPDSATGKARKARKYG 480 Query: 706 VKIMNEEQFLFLL 718 + I+NE+ LL Sbjct: 481 IPIINEDALSRLL 493 >gi|242279609|ref|YP_002991738.1| hypothetical protein Desal_2140 [Desulfovibrio salexigens DSM 2638] gi|242122503|gb|ACS80199.1| conserved hypothetical protein [Desulfovibrio salexigens DSM 2638] Length = 217 Score = 60.6 bits (145), Expect = 8e-07, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 34/146 (23%) Query: 605 GDIIAQAIVEFYQN----PRNICAVEALLKEVSPSIGRHEKNVSSE-------------- 646 G I+ + + E+ + L K+V ++ + ++ Sbjct: 64 GSILKERLDEYLADGVWTEEEQENFCELAKKVVGMDTEADEPMPTKTGATTLPLSDPLPV 123 Query: 647 --IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NP-------G 695 E + V TG R K E VT G V +S+K +++GD +P G Sbjct: 124 MEFEERNFVVTGKFATGVRKKVVEMVTNRGGEVKKTVSKKVHYLVIGDLSSPNWKHSSYG 183 Query: 696 SKLEKAQQL-----GVKIMNEEQFLF 716 K+EKA L + I++EE + Sbjct: 184 RKIEKAIDLRDQGSEIYIVSEEHWYA 209 >gi|145636818|ref|ZP_01792483.1| hypothetical protein CGSHiHH_01017 [Haemophilus influenzae PittHH] gi|145269899|gb|EDK09837.1| hypothetical protein CGSHiHH_01017 [Haemophilus influenzae PittHH] Length = 243 Score = 60.6 bits (145), Expect = 8e-07, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 + FTG K+ R + V +++ + +I+GDN G +K+ A +G +++ Sbjct: 170 ICFTG-FSKVDREYLESLAEIHDFKVRKTVTKNLNFLIMGDNAGPTKINSAIDVGATLLD 228 Query: 711 EEQFLFLLQ 719 E +F +++ Sbjct: 229 ENEFKTMIE 237 >gi|182439459|ref|YP_001827178.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780122|ref|ZP_08239387.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus XylebKG-1] gi|178467975|dbj|BAG22495.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660455|gb|EGE45301.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus XylebKG-1] Length = 341 Score = 60.6 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 4/82 (4%) Query: 642 NVSSEIE-NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKL 698 ++ ++ F+G I R ++ + G V+ +SR T +++ D SK Sbjct: 236 EKEKPLQQGMRVAFSGD-TSIDRELLEDRAIEAGLHVATSVSRLTSLLVTNDPDAATSKT 294 Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720 +KA+ G I+ E F LL+ Sbjct: 295 QKAKSFGTPILEESAFTHLLRD 316 >gi|291300433|ref|YP_003511711.1| exonuclease RNase T and DNA polymerase III [Stackebrandtia nassauensis DSM 44728] gi|290569653|gb|ADD42618.1| Exonuclease RNase T and DNA polymerase III [Stackebrandtia nassauensis DSM 44728] Length = 410 Score = 60.6 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 63/150 (42%), Gaps = 20/150 (13%) Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632 ++ + A+ + ++ L +V + P + A++ L + Sbjct: 269 HHDYLEALARVALADHHLSAEEEEDLRQVAGI-----------LDLP--LEAID-LAIKA 314 Query: 633 SPSIGRHEKNVSSEIE-NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 + ++ + I +VFTGT+ + R + ++ + G V +++K ++I Sbjct: 315 AQALSKDSDTTPLPIAPGDMVVFTGTMPE-SREEWEQRAIEHGFVPHRAVTKKVKLVIAA 373 Query: 692 DN---PGSKLEKAQQLGVKIMNEEQFLFLL 718 D+ G K +KA+ + IM+ ++F +L Sbjct: 374 DSDSLSG-KAKKARGYNIPIMDVDRFREVL 402 >gi|239986791|ref|ZP_04707455.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 11379] gi|291443743|ref|ZP_06583133.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 15998] gi|291346690|gb|EFE73594.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 15998] Length = 343 Score = 60.6 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 4/82 (4%) Query: 642 NVSSEIE-NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKL 698 ++ ++ F+G I R ++ + G V+ +SR T +++ D SK Sbjct: 238 EKEKPLKQGMRVAFSGD-TSIDRELLEDRAVEAGLHVATSVSRLTSLLVTNDPDAATSKT 296 Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720 +KA+ G I+ E F LL+ Sbjct: 297 QKAKSFGTPILEESAFTHLLRD 318 >gi|239940309|ref|ZP_04692246.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 15998] Length = 341 Score = 60.6 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 4/82 (4%) Query: 642 NVSSEIE-NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKL 698 ++ ++ F+G I R ++ + G V+ +SR T +++ D SK Sbjct: 236 EKEKPLKQGMRVAFSGD-TSIDRELLEDRAVEAGLHVATSVSRLTSLLVTNDPDAATSKT 294 Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720 +KA+ G I+ E F LL+ Sbjct: 295 QKAKSFGTPILEESAFTHLLRD 316 >gi|311899062|dbj|BAJ31470.1| putative DNA polymerase III subunit epsilon [Kitasatospora setae KM-6054] Length = 329 Score = 60.2 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 6/81 (7%) Query: 644 SSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS---KLE 699 S + + ++ TG R ++ T+ G +++ +SR T +++ + P S K Sbjct: 244 GSPLVQGMRVAITGDTAT-DRELLEDRATEAGLHIASSVSRLTSLLVTNE-PTSWSGKAR 301 Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720 KA++ G ++ E+ FL LL++ Sbjct: 302 KAREYGTPVVGEDAFLQLLRE 322 >gi|239629265|ref|ZP_04672296.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239528470|gb|EEQ67471.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 94 Score = 60.2 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 12/91 (13%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNP------GSKL 698 + K+++FTG L+ +R +AQ+ T LGA + +K DI++VG P KL Sbjct: 4 LRGKRILFTGRLRSFRRFQAQQLATILGAKPVNGIDKKVDILVVGIISKPYDQLLTTQKL 63 Query: 699 EKAQQLGVKIMNEEQFLFL----LQQYNTTL 725 A+ G+ ++E F+ L Q T+ Sbjct: 64 TYARTYGIPKIDELAFISWCQWRLDQLKATI 94 >gi|220929247|ref|YP_002506156.1| NAD-dependent DNA ligase [Clostridium cellulolyticum H10] gi|219999575|gb|ACL76176.1| NAD-dependent DNA ligase [Clostridium cellulolyticum H10] Length = 247 Score = 60.2 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 23/123 (18%) Query: 616 YQNPRNICA--VEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 + N NI + L + + N +E+ FTG +++R Q V Sbjct: 126 FNNSVNIDIYEINKLKDIIKIEGLCSVDPDINFCNEL----FCFTGVSSRLRRADIQNIV 181 Query: 671 TQLGAVVSAILSRKTDIIIVGDNP---------GSKLEKAQQL-----GVKIMNEEQFLF 716 LG +++ T +++GDN G K+E+A L + I++E F Sbjct: 182 ESLGGKFKNTVTKDTKYLVIGDNGNPCWAFSCYGRKVEQAVTLRKSGKSILIVHENDFWN 241 Query: 717 LLQ 719 ++ Sbjct: 242 AVE 244 >gi|302546442|ref|ZP_07298784.1| putative DNA polymerase III epsilon subunit [Streptomyces hygroscopicus ATCC 53653] gi|302464060|gb|EFL27153.1| putative DNA polymerase III epsilon subunit [Streptomyces himastatinicus ATCC 53653] Length = 335 Score = 60.2 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGV 706 ++ F+G + R ++ + G V+ +SR T +++ D SK KA+ G Sbjct: 250 GMRVAFSGD-TSVDRELLEDRAIEAGLHVATSVSRLTSLLVTNDPDAATSKTAKARSFGT 308 Query: 707 KIMNEEQFLFLL 718 I++E F LL Sbjct: 309 PIVDEAAFTHLL 320 >gi|288921215|ref|ZP_06415500.1| stress protein [Frankia sp. EUN1f] gi|288347369|gb|EFC81661.1| stress protein [Frankia sp. EUN1f] Length = 622 Score = 60.2 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 7/80 (8%) Query: 642 NVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIII---VGDNPGSK 697 + I+ ++ FTG + R + ++ G V+ +SR+T +++ VG G K Sbjct: 195 AEAGLIQGMRIAFTG--ETDTPRDRLEQLAIDAGLAVATSVSRRTSVLVTNHVGSGSG-K 251 Query: 698 LEKAQQLGVKIMNEEQFLFL 717 + A GV +++E FL L Sbjct: 252 AKAAVAHGVPVIDEATFLRL 271 >gi|307826184|ref|ZP_07656395.1| hypothetical protein MettuDRAFT_4242 [Methylobacter tundripaludum SV96] gi|307732823|gb|EFO03689.1| hypothetical protein MettuDRAFT_4242 [Methylobacter tundripaludum SV96] Length = 309 Score = 60.2 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 25/102 (24%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK----TDIIIVGD---NP------GSKL 698 V TG L+ R + + + G V + + TD +++GD G K+ Sbjct: 123 FVITGNLKMGARRTVIQAIEEQGGEV---VLKNIRMDTDYLVIGDIGSKAWMHSTHGRKI 179 Query: 699 EKAQQL-----GVKIMNEEQFLF-L---LQQYNTTLRIHDDD 731 EKA +L G+ I++E+ F+ L ++Q + ++ + + Sbjct: 180 EKAVELREQGHGIAIISEQHFMDSLIPNIEQQSASIDAANTN 221 >gi|300780873|ref|ZP_07090727.1| DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC 33030] gi|300532580|gb|EFK53641.1| DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC 33030] Length = 389 Score = 59.8 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 41/93 (44%), Gaps = 7/93 (7%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + + + +S + + + TG + + + + G V +++KT I++ G+ Sbjct: 289 TIPDPAVDADPNSPLYGQNVTLTGEFDPFDKGQLWDGIANQGGQVGKNVTKKTTILVTGE 348 Query: 693 --NPGSKLEKAQQL-----GVKIMNEEQFLFLL 718 SK ++A++L + I E+ L +L Sbjct: 349 WATMTSKEKRARELMDKGQDIDIWPAEKLLNVL 381 >gi|153812315|ref|ZP_01964983.1| hypothetical protein RUMOBE_02714 [Ruminococcus obeum ATCC 29174] gi|149831477|gb|EDM86564.1| hypothetical protein RUMOBE_02714 [Ruminococcus obeum ATCC 29174] Length = 42 Score = 59.8 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 2/38 (5%) Query: 682 SRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFL 717 + KT+ +I D + SK +KA++LG+ I++EE FL L Sbjct: 2 TGKTNYLINNDVTSNSSKNKKARELGIPILSEEDFLKL 39 >gi|224007511|ref|XP_002292715.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220971577|gb|EED89911.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 1233 Score = 59.8 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 8/53 (15%) Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSKLEKAQQ 703 +++ R A + V LG V++ +S KTD ++VG GSK KA + Sbjct: 372 EELARDLASDLVLSLGGKVTSAVSGKTDYLVVGSILEDGREVEEGSKYRKALE 424 >gi|145344042|ref|XP_001416548.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576774|gb|ABO94841.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 597 Score = 59.4 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 13/88 (14%) Query: 650 KKLVFTGTLQKIQ--R-------HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLE 699 V TG + R A++ + + G VV + +S TD+++VG+ PG SKL Sbjct: 403 MTFVLTGIFPDLGGDRIGLMQGKDMAEKLIQRFGGVVRSAVSGATDVLLVGEEPGVSKLS 462 Query: 700 KAQ-QLGVKIMNEEQFLFLLQQYNTTLR 726 A+ + K++N E L ++ + ++ Sbjct: 463 AARTKANCKVLNLEHILDMI--HGRSIE 488 >gi|258510010|ref|YP_003175673.1| predicted ORF [Lactobacillus rhamnosus Lc 705] gi|257152851|emb|CAR91822.1| Conserved cytosolic protein [Lactobacillus rhamnosus Lc 705] Length = 94 Score = 59.4 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 12/91 (13%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNP------GSKL 698 + K+++FTG L+ +R +AQ+ T LGA + + DI++VG P KL Sbjct: 4 LRGKRILFTGRLRSFRRLQAQQLATILGAKPVNGIDKNVDILVVGIISKPYDQLLTTQKL 63 Query: 699 EKAQQLGVKIMNEEQFLFL----LQQYNTTL 725 A+ G+ ++E F+ L Q TL Sbjct: 64 TYARTYGIPKIDELAFISWCQWRLDQLKATL 94 >gi|59897250|gb|AAX12045.1| DNA ligase [Enterobacteria phage T5] Length = 259 Score = 59.4 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 88/301 (29%), Gaps = 57/301 (18%) Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ CP C S++ C C AQ + +++F ++ Sbjct: 1 MKIEIPTQCPSCGSKLDLVNG--------QLFCRNKSNCPAQSSKLIENFCTKMKLK--- 49 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 F + +++F L G + + R Sbjct: 50 -------GFGPKTIEKLELTKISELFYLTEEDLVRAV------GSKVAAKLISELNTKVR 96 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 +I + SLGI +G A+ L++ S+Q+ Sbjct: 97 GDIDFGSVLGSLGIPLIGEVAAKKLSQNCTSFQDVKA-------------------DG-- 135 Query: 606 DIIAQAIVEFYQNPRNICAVEAL---LKEVSPSIGRHEKNVSSEIE---NKKLVFTGTLQ 659 + + +P+ +E L + + + TG+LQ Sbjct: 136 -KAGENYKAWLNSPQGKDVIE-LPWKFSKGIKGAKAEVIITDGLVAQPNGITVCITGSLQ 193 Query: 660 KI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK---AQQLGVKIMNEEQFL 715 R A Y+ LG V +++ +I D A+ G++I++ ++ L Sbjct: 194 DFANRTDATNYLEGLGYTVKKSVTKDVKCLICEDESKRSSSSYKKAETNGIEILSIKELL 253 Query: 716 F 716 Sbjct: 254 E 254 >gi|318605372|emb|CBY26870.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Yersinia enterocolitica subsp. palearctica Y11] Length = 294 Score = 59.4 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 58/160 (36%), Gaps = 34/160 (21%) Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIR--VPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632 ++I D+ +L + + G IA +V+ Sbjct: 150 KELYKLVKDILADGIITPDEREALKQALIDFTGCDIANGVVDGMA--------------- 194 Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + H N+ +++ + TG R++ + + G +V +++K D +I+G Sbjct: 195 TRLPIEHVDNID--LQDSVVCLTGKFLCGSRNQCKTEIEAAGGIVVDTITQKIDYLIIGA 252 Query: 693 ---------NPGSKLEKAQ----QLGVK--IMNEEQFLFL 717 + G K+E A + GV I++EEQ+ Sbjct: 253 LSSRDWRFQSYGRKIELAINYRDEKGVPLKIISEEQWKSF 292 >gi|34764272|ref|ZP_00145116.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27885952|gb|EAA23284.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 99 Score = 59.4 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 24/55 (43%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ L +++ + + YY + +I D E+D +++ +P L Sbjct: 29 EKIVKLREDLDKYRNSYYNDNISLISDYEFDMSLTELESLKEKYPSLRNFSSTTS 83 >gi|227833455|ref|YP_002835162.1| hypothetical protein cauri_1631 [Corynebacterium aurimucosum ATCC 700975] gi|262184446|ref|ZP_06043867.1| hypothetical protein CaurA7_10673 [Corynebacterium aurimucosum ATCC 700975] gi|227454471|gb|ACP33224.1| hypothetical protein cauri_1631 [Corynebacterium aurimucosum ATCC 700975] Length = 461 Score = 59.0 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 39/95 (41%), Gaps = 10/95 (10%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + + + + + + TG + + + + G V +++KT I++VG Sbjct: 361 TIPDPNPDADPEGALFGQNVTLTGDFEPFDKGLLWSKIAERGGQVGKNVTKKTTILVVGQ 420 Query: 693 NP--GSKLEKAQQL-----GVKIMNEEQFLFLLQQ 720 SK ++A++L + I + LL++ Sbjct: 421 WATKTSKEKRAEELQGKGQDIAIWQTD---KLLEE 452 >gi|38234148|ref|NP_939915.1| putative DNA polymerase III epsilon subunit [Corynebacterium diphtheriae NCTC 13129] gi|38200410|emb|CAE50098.1| Putative DNA polymerase III epsilon subunit [Corynebacterium diphtheriae] Length = 448 Score = 59.0 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 38/93 (40%), Gaps = 7/93 (7%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG- 691 + + + + + + +G + + + G ++ +++KT I++ G Sbjct: 345 TIPDPNPDADPQGRLFGQSVTLSGDFAPYDKGELWAGIANQGGIIGKNVTKKTTILVCGP 404 Query: 692 -DNPGSKLEKAQQL-----GVKIMNEEQFLFLL 718 D P SK ++A++L + + +E L Sbjct: 405 WDKPTSKQKRAEELRAKGQEIDLWTQEDLFAQL 437 >gi|305681196|ref|ZP_07404003.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Corynebacterium matruchotii ATCC 14266] gi|305659401|gb|EFM48901.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Corynebacterium matruchotii ATCC 14266] Length = 444 Score = 58.7 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG- 691 + + + + + + TG + + + E + +GA V+ +++KT ++++G Sbjct: 335 TIPDPNPDADPNHPLFGHVITLTGDFEPYDKGELWEKMAAVGATVAKNVTKKTTMLVMGP 394 Query: 692 -DNPGSKLEKAQQL 704 D+ SK ++A++L Sbjct: 395 WDSVTSKQKRAEEL 408 >gi|225021962|ref|ZP_03711154.1| hypothetical protein CORMATOL_01994 [Corynebacterium matruchotii ATCC 33806] gi|224945248|gb|EEG26457.1| hypothetical protein CORMATOL_01994 [Corynebacterium matruchotii ATCC 33806] Length = 456 Score = 58.7 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG- 691 + + + + + + TG + + + E + +GA V+ +++KT ++++G Sbjct: 347 TIPDPNPDADPNHPLFGHVITLTGDFEPYDKGELWEKMAAVGATVAKNVTKKTTMLVMGP 406 Query: 692 -DNPGSKLEKAQQL 704 D+ SK ++A++L Sbjct: 407 WDSVTSKQKRAEEL 420 >gi|203284766|ref|YP_002221610.1| Hypothetical cytosolic protein [Lactobacillus rhamnosus HN001] gi|229553843|ref|ZP_04442568.1| hypothetical cytosolic protein [Lactobacillus rhamnosus LMS2-1] gi|258507432|ref|YP_003170183.1| cytosolic protein [Lactobacillus rhamnosus GG] gi|290891682|ref|ZP_06554731.1| hypothetical protein AWRIB429_2121 [Oenococcus oeni AWRIB429] gi|199631655|gb|ACH91631.1| Hypothetical cytosolic protein [Lactobacillus rhamnosus HN001] gi|229312792|gb|EEN78765.1| hypothetical cytosolic protein [Lactobacillus rhamnosus LMS2-1] gi|257147359|emb|CAR86332.1| Conserved cytosolic protein [Lactobacillus rhamnosus GG] gi|259648787|dbj|BAI40949.1| hypothetical protein [Lactobacillus rhamnosus GG] gi|290478681|gb|EFD87356.1| hypothetical protein AWRIB429_2121 [Oenococcus oeni AWRIB429] gi|327383984|gb|AEA55459.1| cytosolic protein [Lactobacillus casei LC2W] gi|327387196|gb|AEA58669.1| cytosolic protein [Lactobacillus casei BD-II] Length = 94 Score = 58.7 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 12/91 (13%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNP------GSKL 698 + K+++FTG L+ +R +AQ+ T LGA + + DI++VG P KL Sbjct: 4 LRGKRILFTGRLRSFRRFQAQQLATILGAKPVNGIDKNVDILVVGIISKPYDQLLTTQKL 63 Query: 699 EKAQQLGVKIMNEEQFLFL----LQQYNTTL 725 A+ G+ ++E F+ L Q TL Sbjct: 64 TYARTYGIPKIDELAFISWCQWRLDQLKATL 94 >gi|330503081|ref|YP_004379950.1| NAD-dependent DNA ligase [Pseudomonas mendocina NK-01] gi|328917367|gb|AEB58198.1| NAD-dependent DNA ligase [Pseudomonas mendocina NK-01] Length = 212 Score = 58.7 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 14/76 (18%) Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQQ 703 VFTGT+ R Q+ V + G ++ +++KT ++VG + G K+ KA + Sbjct: 131 VFTGTMAYGPRKACQQLVEERGGLIGGGVNKKTHYLVVGSIGNEQWRHSSYGLKIMKAVE 190 Query: 704 L---G--VKIMNEEQF 714 L G + I+ E+ + Sbjct: 191 LRESGTPISIVGEDTW 206 >gi|320011539|gb|ADW06389.1| DNA polymerase III, epsilon subunit [Streptomyces flavogriseus ATCC 33331] Length = 346 Score = 58.7 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 4/82 (4%) Query: 642 NVSSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKL 698 + + ++ F+G I R ++ + G V+ +SR T +++ D + SK Sbjct: 249 ESDKPLMQGMRVAFSGD-TSIDRELLEDRAVEAGLHVATSVSRLTSLLVTNDPDSATSKT 307 Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720 KA+ G ++ E F LL+ Sbjct: 308 VKAKSFGTPVLEESAFTHLLRD 329 >gi|289706337|ref|ZP_06502695.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Micrococcus luteus SK58] gi|289556832|gb|EFD50165.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Micrococcus luteus SK58] Length = 371 Score = 58.3 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 1/67 (1%) Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 E + + + + +VFTG + + R A+ GA + + T Sbjct: 244 RWPDEGVNPLPNPAADPGHPLFGQTVVFTGGI-GMSRQSAKTRAAAQGAQTANRVGAATT 302 Query: 687 IIIVGDN 693 +++VGD Sbjct: 303 MLVVGDG 309 >gi|254386412|ref|ZP_05001717.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1] gi|194345262|gb|EDX26228.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1] Length = 334 Score = 58.3 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 40/82 (48%), Gaps = 8/82 (9%) Query: 644 SSEIE-NKKLVFTG--TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKL 698 ++ ++ F+G +++ R ++ + G ++ +SR T +++ D + SK Sbjct: 250 GKPLKQGMRIAFSGDTSVE---RELLEDRAVEAGLHIATSVSRLTSLLVTNDPDSATSKT 306 Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720 KA+ G +++E F LL+ Sbjct: 307 VKAKSFGTPVVDEAAFTQLLRD 328 >gi|297198751|ref|ZP_06916148.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC 29083] gi|297147193|gb|EDY59400.2| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC 29083] Length = 327 Score = 58.3 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%) Query: 644 SSEIE-NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPG-SKLEK 700 ++ ++ F+G I+R ++ + G V+ +SR T +++ D + G SK+ K Sbjct: 242 GKPLKQGMRIAFSGD-TSIERDLLEDRAIEAGLHVATSISRLTSLLVTNDPDSGTSKVVK 300 Query: 701 AQQLGVKIMNEEQFLFLLQQ 720 A+Q G +++E F LL+ Sbjct: 301 ARQFGTPVVDEAAFGQLLRD 320 >gi|328881521|emb|CCA54760.1| DNA polymerase III epsilon subunit [Streptomyces venezuelae ATCC 10712] Length = 330 Score = 58.3 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 4/82 (4%) Query: 642 NVSSEIE-NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKL 698 ++ ++ F+G + R ++ G V+ +SR T +++ D + SK Sbjct: 244 ETDKPLKQGMRVAFSGD-TSVDRELLEDRTVDAGLHVAGSVSRLTSLLVTNDPDSATSKT 302 Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720 KA+ G I++E + LL+ Sbjct: 303 VKAKSFGTPIVDEAAYTQLLRD 324 >gi|333027027|ref|ZP_08455091.1| putative DNA polymerase III [Streptomyces sp. Tu6071] gi|332746879|gb|EGJ77320.1| putative DNA polymerase III [Streptomyces sp. Tu6071] Length = 611 Score = 57.9 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 9/83 (10%) Query: 641 KNVSSEIENKKLVFTG---TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GS 696 + ++ K+ TG T R + G V + +S T +++ + GS Sbjct: 220 EPGGRLVQGMKIALTGQTAT----SRAELVARSVAAGLNVMSSVSGHTSVLVTNEPASGS 275 Query: 697 -KLEKAQQLGVKIMNEEQFLFLL 718 K +A GV +++E FL LL Sbjct: 276 AKARRAAAEGVPVIDEHAFLRLL 298 >gi|318060238|ref|ZP_07978961.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG] gi|318076974|ref|ZP_07984306.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF] Length = 647 Score = 57.9 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 9/83 (10%) Query: 641 KNVSSEIENKKLVFTG---TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GS 696 + ++ K+ TG T R + G V + +S T +++ + GS Sbjct: 216 EPGGRLVQGMKIALTGQTAT----SRAELVARSVAAGLNVMSSVSGHTSVLVTNEPASGS 271 Query: 697 -KLEKAQQLGVKIMNEEQFLFLL 718 K +A GV +++E FL LL Sbjct: 272 AKARRAAAEGVPVIDEHAFLRLL 294 >gi|302519143|ref|ZP_07271485.1| DNA polymerase III [Streptomyces sp. SPB78] gi|302428038|gb|EFK99853.1| DNA polymerase III [Streptomyces sp. SPB78] Length = 664 Score = 57.9 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 9/83 (10%) Query: 641 KNVSSEIENKKLVFTG---TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GS 696 + ++ K+ TG T R + G V + +S T +++ + GS Sbjct: 273 EPGGRLVQGMKIALTGQTAT----SRAELVARSVAAGLNVMSSVSGHTSVLVTNEPASGS 328 Query: 697 -KLEKAQQLGVKIMNEEQFLFLL 718 K +A GV +++E FL LL Sbjct: 329 AKARRAAAEGVPVIDEHAFLRLL 351 >gi|224541263|ref|ZP_03681802.1| hypothetical protein CATMIT_00423 [Catenibacterium mitsuokai DSM 15897] gi|224525812|gb|EEF94917.1| hypothetical protein CATMIT_00423 [Catenibacterium mitsuokai DSM 15897] Length = 102 Score = 57.9 bits (138), Expect = 7e-06, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 15/84 (17%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV-GDNP--------GSK 697 + K V TG ++R Y+ G V + +R TD +IV G+ G+K Sbjct: 16 LTGK-FVVTGLFTSMRRSDVVHYIYTHGGSVLSAPTRATDYLIVGGEKSKTWKYGQYGTK 74 Query: 698 LEKAQQL-----GVKIMNEEQFLF 716 + K L + I++EE F+ Sbjct: 75 IRKGLDLREKDEKILIISEEDFMR 98 >gi|309784374|ref|ZP_07679013.1| NAD-dependent DNA ligase OB-fold domain protein [Shigella dysenteriae 1617] gi|308927881|gb|EFP73349.1| NAD-dependent DNA ligase OB-fold domain protein [Shigella dysenteriae 1617] Length = 329 Score = 57.9 bits (138), Expect = 7e-06, Method: Composition-based stats. Identities = 54/339 (15%), Positives = 105/339 (30%), Gaps = 57/339 (16%) Query: 287 EMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQI 346 + ++ LP+ DG+V + + + W+++ K+ + I + Sbjct: 33 RNEWWKAKLPFVTDGVVVRAAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAV 90 Query: 347 GRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRA 406 G++G ++ VA L PV + + + DI GD++LV A Sbjct: 91 GKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQILVSLA 139 Query: 407 GEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CS 465 G+ IP++ + R + C C Sbjct: 140 GQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQ 179 Query: 466 AQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE 525 Q + RL S+ ++G+G+ ++ L Q +T Sbjct: 180 EQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT---- 231 Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 G L+ N+ R R++ ++GI A A S+ Sbjct: 232 --PGIAKSKSAQLWHQFNQARKQPFTRWVMAMGI---PLTRAALNASDERSWSQLLVSTE 286 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 W L P +G A+ ++E+ +N + Sbjct: 287 QF-------WQQL---PGIGSGRARQVIEWKENAQIKKL 315 >gi|291164964|gb|ADD80993.1| gp102 [Rhodococcus phage ReqiPepy6] Length = 542 Score = 57.9 bits (138), Expect = 7e-06, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 19/46 (41%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 + L I H YY+ + I+ D E+D L + +P+ Sbjct: 18 DRIQQLRMRILVHSYLYYELDQNILTDREFDTLAYELVDLQKRYPE 63 >gi|291165072|gb|ADD81100.1| gp102 [Rhodococcus phage ReqiPoco6] Length = 541 Score = 57.5 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 20/46 (43%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 + L I H YY+ + I+ D E+DAL + +P+ Sbjct: 18 DRIQHLRIRILVHSYLYYEMDQNILTDREFDALAYELVDLQKRYPE 63 >gi|282861901|ref|ZP_06270964.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE] gi|282562926|gb|EFB68465.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE] Length = 333 Score = 57.5 bits (137), Expect = 9e-06, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 4/82 (4%) Query: 642 NVSSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKL 698 + + ++ F+G + R ++ + G V+ +SR T +++ D SK Sbjct: 236 ESDKPLVQGMRVAFSGD-TSVDRELLEDRAVEAGLHVATSVSRLTSLLVTNDPDAATSKT 294 Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720 KA+ G I+ E F LL+ Sbjct: 295 VKAKSFGTPILEESAFTHLLRD 316 >gi|330977977|gb|EGH77880.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 210 Score = 57.1 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 12/69 (17%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702 +FTGT+ R +E V + G + + L++KT +IVG + G K++KA Sbjct: 128 FMFTGTMAYGPRKHCEELVLERGGQICSGLTKKTSFLIVGSLGNDQWLHSSYGLKIKKAV 187 Query: 703 QL---GVKI 708 +L GV I Sbjct: 188 ELREAGVPI 196 >gi|289675448|ref|ZP_06496338.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. syringae FF5] Length = 210 Score = 57.1 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 12/69 (17%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702 +FTGT+ R +E V + G + + L++KT +IVG + G K++KA Sbjct: 128 FMFTGTMAYGPRKHCEELVLERGGQICSGLTKKTSFLIVGSLGNDQWLHSSYGLKIKKAV 187 Query: 703 QL---GVKI 708 +L GV I Sbjct: 188 ELREAGVPI 196 >gi|306836447|ref|ZP_07469422.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC 49726] gi|304567666|gb|EFM43256.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC 49726] Length = 454 Score = 57.1 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 40/94 (42%), Gaps = 7/94 (7%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + + + + + + TG + + + + + G V +++KT +++VG+ Sbjct: 354 TIPDPNPDADPKGALYGQHVTLTGDFEPYDKGLLWQGIAKRGGQVGKNVTKKTTLLVVGE 413 Query: 693 --NPGSKLEKAQQL-----GVKIMNEEQFLFLLQ 719 SK ++A++L + + + Q L+ Sbjct: 414 WAKKTSKEKRAEELQEKGQDITMWSGAQLFSELE 447 >gi|256851899|ref|ZP_05557287.1| DNA polymerase III [Lactobacillus jensenii 27-2-CHN] gi|260661840|ref|ZP_05862750.1| DNA polymerase III [Lactobacillus jensenii 115-3-CHN] gi|282931860|ref|ZP_06337341.1| DNA polymerase III [Lactobacillus jensenii 208-1] gi|256615857|gb|EEU21046.1| DNA polymerase III [Lactobacillus jensenii 27-2-CHN] gi|260547309|gb|EEX23289.1| DNA polymerase III [Lactobacillus jensenii 115-3-CHN] gi|281304023|gb|EFA96144.1| DNA polymerase III [Lactobacillus jensenii 208-1] Length = 317 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 15/113 (13%) Query: 619 PRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 P + V+ LK + + + ++NK +VF GT+ K + + V+ +G Sbjct: 203 PEMLNEVKDSLKSCVLTEEIPFEYLIKRNPLKNKTVVFAGTVNK---EELELIVSNMGGQ 259 Query: 677 VSAILSRKTDIIIVGD-----NPGSKLEKAQQL---GVKI--MNEEQFLFLLQ 719 V + D +++GD S+L+KA++L G+KI ++E FL +L Sbjct: 260 VRDHVDSTIDYLVMGDKDFFSKSNSELQKARRLISEGIKISRLSESFFLDMLD 312 >gi|85712349|ref|ZP_01043399.1| hypothetical protein OS145_06549 [Idiomarina baltica OS145] gi|85693792|gb|EAQ31740.1| hypothetical protein OS145_06549 [Idiomarina baltica OS145] Length = 124 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%) Query: 652 LVFTGTLQKIQRHK-AQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIM 709 + FTG I V A +++K D ++ G N G K+EKA+ G + + Sbjct: 48 VCFTGF--GISDKDYLSNLAHDNRFKVVASVTKKLDYLVGGANAGPKKIEKAEAQGAQCL 105 Query: 710 NEEQFLFLLQ 719 N+++F+ L++ Sbjct: 106 NQQEFIRLVE 115 >gi|326497313|dbj|BAK02241.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 978 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 + T L +R + E + Q G SA L++K ++ + G K A++ G Sbjct: 204 PFTGLNICIT-KLDADKRKELMEIIEQNGGQYSANLTKKCTHLVANEPGGDKYLVAKRWG 262 Query: 706 -VKIMNE 711 ++I+N+ Sbjct: 263 NIQIVNQ 269 Score = 37.9 bits (86), Expect = 7.3, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 19/46 (41%) Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 K S ++ S+ + K F+ + +R + ++V + G Sbjct: 554 KATSSAVKSQSSTSSNIFKGKTFCFSNSFSHDRRAEVIDWVREGGG 599 >gi|297561085|ref|YP_003680059.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845533|gb|ADH67553.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 335 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 44/94 (46%), Gaps = 11/94 (11%) Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--D 692 + + + + + + +G L+ + + + V + G + ++RKTD++++G Sbjct: 237 PEPSPDADPTGPLYGRTVCVSGDLESMDKPEVWRRVAEAGGRPAKNVTRKTDMLVLGGHG 296 Query: 693 NPGSKLEK---AQ---QLG--VKIMNEEQFLFLL 718 PG K K A+ + G + ++ E + L LL Sbjct: 297 GPG-KTAKHLRAEIYRERGQRIDLVTEAELLALL 329 >gi|297205524|ref|ZP_06922920.1| DNA polymerase III [Lactobacillus jensenii JV-V16] gi|297150102|gb|EFH30399.1| DNA polymerase III [Lactobacillus jensenii JV-V16] Length = 317 Score = 56.7 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 15/113 (13%) Query: 619 PRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 P + V+ LK + + + ++NK +VF GT+ K + + V+ +G Sbjct: 203 PEMLNEVKDSLKSCVLTEEIPFEYLIKRNPLKNKTVVFAGTVNK---EELELIVSNMGGQ 259 Query: 677 VSAILSRKTDIIIVGD-----NPGSKLEKAQQL---GVKI--MNEEQFLFLLQ 719 V + D +++GD S+L+KA++L G+KI ++E FL +L Sbjct: 260 VRDHVDSTIDYLVMGDKDFFSKSNSELQKARRLISEGIKISRLSESFFLDMLD 312 >gi|293392402|ref|ZP_06636724.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gi|291425056|gb|EFE98263.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 293 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 19/87 (21%) Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLE 699 + TG +R +E + G V +++K D +++G + G K+E Sbjct: 208 GRVFCLTGIFMAGKRSIVEERIKFAGGNVIDNITKKLDYLVIGTLSSRDWKFSSHGRKIE 267 Query: 700 KA--------QQLGVKIMNEEQFLFLL 718 KA +L KI++EE L Sbjct: 268 KAINYRDEEGAKL--KIISEENLFEFL 292 >gi|29832981|ref|NP_827615.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis MA-4680] gi|29610102|dbj|BAC74150.1| putative DNA polymerase III epsilon subunit [Streptomyces avermitilis MA-4680] Length = 325 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 6/83 (7%) Query: 642 NVSSEIE-NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS---K 697 ++ ++ F+G + R ++ + G V+ LSR T +++ D PGS K Sbjct: 238 EEGKPLKQGMRVAFSGD-TSVDRELLEDRAVEAGLHVATSLSRLTSLLVTND-PGSGTSK 295 Query: 698 LEKAQQLGVKIMNEEQFLFLLQQ 720 KA+Q G +++E F LL+ Sbjct: 296 TAKARQYGTPVIDEAAFGQLLRD 318 >gi|269956916|ref|YP_003326705.1| DNA polymerase III subunit epsilon [Xylanimonas cellulosilytica DSM 15894] gi|269305597|gb|ACZ31147.1| DNA polymerase III, epsilon subunit [Xylanimonas cellulosilytica DSM 15894] Length = 547 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV-GDNPGSKLEKAQQLGVKIMN 710 +VFTG R G V +SRKT ++ G+ G+K +A +LG +I++ Sbjct: 397 VVFTGDFP--SRAALTAKAEAAGLRVVGSVSRKTAALVTDGEFIGNKANRAAELGTRIVS 454 Query: 711 EEQFLFLL 718 + F LL Sbjct: 455 PDDFTVLL 462 >gi|145631925|ref|ZP_01787680.1| hypothetical protein CGSHi22421_00747 [Haemophilus influenzae R3021] gi|145642324|ref|ZP_01797887.1| hypothetical protein CGSHiR3021_00587 [Haemophilus influenzae R3021] gi|260582516|ref|ZP_05850307.1| NAD-dependent DNA ligase [Haemophilus influenzae NT127] gi|144982430|gb|EDJ90000.1| hypothetical protein CGSHi22421_00747 [Haemophilus influenzae R3021] gi|145272981|gb|EDK12864.1| hypothetical protein CGSHiR3021_00587 [Haemophilus influenzae 22.4-21] gi|260094496|gb|EEW78393.1| NAD-dependent DNA ligase [Haemophilus influenzae NT127] Length = 162 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 22/123 (17%) Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRH--------EKNVSSEIENKKLVFTGTLQKIQR 663 I EF E L +E+ + K + + FTG + Sbjct: 41 IKEFVNFDDAQHYAENLPEEIFIQFDQKLNAIKHIPSKPIQHPL---TFCFTG----FSK 93 Query: 664 HKAQEYV---TQLGAVVSAILSRKTDIIIVGDNP---G-SKLEKAQQLGVKIMNEEQFLF 716 + Q + Q+G ++ K D +++ +N G SK KA+ LGVK++ E QF Sbjct: 94 AQKQALIDLTIQVGLRAIQDVTSKCDYLVMCENSKTIGPSKRAKAESLGVKLIFENQFFH 153 Query: 717 LLQ 719 L++ Sbjct: 154 LIE 156 >gi|119182012|ref|XP_001242164.1| hypothetical protein CIMG_06060 [Coccidioides immitis RS] Length = 1406 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 5/69 (7%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----DNPGSKLEKAQ 702 +NK +V +GT ++ + + G SA ++ ++ +N G+K ++A Sbjct: 5 FKNKTVVLSGTFPGYKQADLKNLIETNGGTFSAKVTDDCTHLVCTQKEFENNGTKNKQAS 64 Query: 703 QL-GVKIMN 710 + G+ I++ Sbjct: 65 SITGISIVS 73 >gi|323195836|gb|EFZ81008.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] Length = 380 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 68/426 (15%), Positives = 136/426 (31%), Gaps = 61/426 (14%) Query: 206 IAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 R N R+ +G+L R + L F+ + ++ + L Sbjct: 8 HIQQRMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPERLSQLAKAGFSLT 67 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 V+ A+ + + S LP+ DG+V ++ + + W+ Sbjct: 68 KKYTLAVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPAAQYWRPGQGD--WL 120 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 + K+ ++ I +G++G +T VA L PV + + + Sbjct: 121 AAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI-----------G 169 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 DI GD++LV AG+ IP++ +++ R Sbjct: 170 SVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------------------ 211 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 P + C Q + RL SR A ++G+G+ ++ Sbjct: 212 -PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRALHQT-------- 262 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 + ++ +I N GF ++ N R R+I ++ + Sbjct: 263 --HRFEHIFSWLALTSAQIANTPGFAKGKSEQIWRQFNLARRQPFTRWIMAM---DIPLT 317 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 A A S++ ++P G+ A ++++ NP+ I A+ Sbjct: 318 QAALQASGDRSWEQLLMRTEQHWR----------QLPSTGERRAGRVIDWRDNPQ-IKAL 366 Query: 626 EALLKE 631 L Sbjct: 367 SRWLAA 372 >gi|167623238|ref|YP_001673532.1| hypothetical protein Shal_1305 [Shewanella halifaxensis HAW-EB4] gi|167353260|gb|ABZ75873.1| hypothetical protein Shal_1305 [Shewanella halifaxensis HAW-EB4] Length = 396 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 38/64 (59%), Gaps = 2/64 (3%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 + FTG ++R++ + +G V +++ I+ +G+N G SK++KA++ G +++ Sbjct: 6 ICFTG-FNAVERNELETQAELVGLSVKKNVTKNLHILCIGENAGPSKVDKAREGGSVVID 64 Query: 711 EEQF 714 + QF Sbjct: 65 KSQF 68 Score = 54.0 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 14/81 (17%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSKLEKAQ 702 FTG + R + LGA+ S + T +++G G K+E A Sbjct: 316 FCFTGKFKSGSRKTVESKAQSLGAITSKGVLLSTQFVVIGTLASRDWKYLSHGRKIETAM 375 Query: 703 QLG-----VKIMNEEQFLFLL 718 L + +++EEQ+L + Sbjct: 376 SLKEKGHEIYVISEEQWLKFI 396 >gi|294677511|ref|YP_003578126.1| hypothetical protein RCAP_rcc01975 [Rhodobacter capsulatus SB 1003] gi|294476331|gb|ADE85719.1| conserved hypothetical protein [Rhodobacter capsulatus SB 1003] Length = 204 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 17/104 (16%) Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 L+ + N+ + ++ FTGT +R + + V + GA V + + TD + Sbjct: 104 LRSTTLPFTEPAPNID--FDGRRFCFTGTFSFGRRQQCEAAVQRYGA-VCGSMVKNTDYL 160 Query: 689 IVGDNP---------GSKLEKAQQL-----GVKIMNEEQFLFLL 718 ++GD G K+E+A + + I++E+ + + Sbjct: 161 VIGDYASAAWKQSSFGRKIERAVEWRAQGASICIVSEQHWRNYI 204 >gi|297516518|ref|ZP_06934904.1| NAD-dependent DNA ligase LigB [Escherichia coli OP50] Length = 83 Score = 56.0 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 27/54 (50%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 A S +A++E+S L+Q+I DD Y++ K + D YD L R F Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75 >gi|258571954|ref|XP_002544780.1| hypothetical protein UREG_04297 [Uncinocarpus reesii 1704] gi|237905050|gb|EEP79451.1| hypothetical protein UREG_04297 [Uncinocarpus reesii 1704] Length = 661 Score = 56.0 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 4/75 (5%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII--VG--DNPGSKLEKA 701 +NK +V +GT + V G SA ++ +I +N G+K ++A Sbjct: 4 IFKNKTIVLSGTFSGHTHASLKSLVETHGGTFSAKVTDDCTHLISSAKEFENNGTKNKQA 63 Query: 702 QQLGVKIMNEEQFLF 716 V +++ + L Sbjct: 64 ASNNVDVVSVDWLLD 78 >gi|238798089|ref|ZP_04641577.1| hypothetical protein ymoll0001_17550 [Yersinia mollaretii ATCC 43969] gi|238718069|gb|EEQ09897.1| hypothetical protein ymoll0001_17550 [Yersinia mollaretii ATCC 43969] Length = 293 Score = 56.0 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 34/160 (21%) Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIR--VPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632 ++I D+ +L + + G IA +V+ Sbjct: 149 KELYKLVKDILADGVITPDEREALKQALIDFTGCDIANGVVDGMA--------------- 193 Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG- 691 + H N+ +++ + TG R+K + + G VV +++K D +I+G Sbjct: 194 TRLPIEHVDNID--LQDAVVCLTGKFLCGSRNKCKTDIEAAGGVVVDTITQKIDYLIIGT 251 Query: 692 --------DNPGSKLEKAQ----QLGVK--IMNEEQFLFL 717 + G K+E A + GV I++EEQ+ Sbjct: 252 LSSRDWRFQSFGRKIELAINYRDEKGVPLKIISEEQWKSF 291 >gi|182682930|ref|YP_001837054.1| NAD-dependent DNA ligase subunit B [Enterobacteria phage EPS7] gi|182630642|gb|ACB97574.1| NAD-dependent DNA ligase subunit B [Enterobacteria phage EPS7] Length = 129 Score = 55.6 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 9/119 (7%) Query: 607 IIAQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEI----ENKKLVFTGTLQKI 661 + + +P+ +E + + ++ ++ + TG+LQ Sbjct: 6 KAGENYKTWLNSPQGKDVIELPWKFSTGIRGAKADIIITDDLVAQPNGITVCITGSLQDF 65 Query: 662 -QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---PGSKLEKAQQLGVKIMNEEQFLF 716 R A Y+ LG V +++ +I D S +KA+ G++I++ ++ L Sbjct: 66 ANRTDATNYLESLGYTVKKSVTKDVKYLICEDESKRSSSSYKKAETNGIEILSIKELLE 124 >gi|237733311|ref|ZP_04563792.1| 3'-5' exonuclease [Mollicutes bacterium D7] gi|229383692|gb|EEO33783.1| 3'-5' exonuclease [Coprobacillus sp. D7] Length = 443 Score = 55.6 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 46/109 (42%), Gaps = 15/109 (13%) Query: 626 EALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684 + LL + ++NK + TG +R + ++ + ++S +++K Sbjct: 332 DELLYYIKNFFKPELDQGDLFDVKNKVICLTGNFCFGERSQLEKLIVLKQGIISKSVTKK 391 Query: 685 TDIIIVGDNP---------GSKLEKA-----QQLGVKIMNEEQFLFLLQ 719 D +++G G+K KA + +++++E + + +L+ Sbjct: 392 VDYLVLGSKGSAGYKYGKYGAKTNKALTMKSEGHKIELISEARLMEVLK 440 >gi|167755995|ref|ZP_02428122.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402] gi|167703987|gb|EDS18566.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402] Length = 443 Score = 55.6 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 46/109 (42%), Gaps = 15/109 (13%) Query: 626 EALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684 + LL + ++NK + TG +R + ++ + ++S +++K Sbjct: 332 DELLYYIKNFFKPELDQGDLFDVKNKVICLTGNFCFGERSQLEKLIVLKQGIISKSVTKK 391 Query: 685 TDIIIVGDNP---------GSKLEKA-----QQLGVKIMNEEQFLFLLQ 719 D +++G G+K KA + +++++E + + +L+ Sbjct: 392 VDYLVLGSKGSAGYKYGKYGAKTNKALTMKSEGHKIELISEARLMEVLK 440 >gi|300933403|ref|ZP_07148659.1| exonuclease, RNase T and DNA polymerase III [Corynebacterium resistens DSM 45100] Length = 1144 Score = 55.6 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 68/177 (38%), Gaps = 24/177 (13%) Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ-AIVEFYQ- 617 +A +LA YLS Q + + ++ + + + Q ++ + Sbjct: 226 DRYRKLLAAALADKYLSASEIKQ-LEESAVRDGISHDDIVAIHE--EFLRQLSVEAWLDG 282 Query: 618 --NPRNICAVEALLKEVSPSIGRHEKNVSSEIEN-KKL---------V-FTGTLQKIQRH 664 + L ++ E+ +++ + + V FTG L + R Sbjct: 283 VVTDEEKHTLRTLAGQLGVDPKLTEQLIATPQTGEQTVGLALAPGDRVTFTGQLD-LPRG 341 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS---KLEKAQQLGVKIMNEEQFLFLL 718 + ++ +G V +++K +++V NP S K +A+ LGV I+ E F LL Sbjct: 342 EWEQRAKSVGLDVGG-VTKK-SVLVVAANPDSTSAKARRARDLGVPIIGERMFAQLL 396 >gi|116326592|ref|YP_796513.1| hypothetical protein LACR_C46 [Lactococcus lactis subsp. cremoris SK11] gi|76574947|gb|ABA47416.1| conserved hypothetical protein [Lactococcus lactis] gi|116108960|gb|ABJ74082.1| hypothetical protein LACR_C46 [Lactococcus lactis subsp. cremoris SK11] Length = 98 Score = 55.6 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 14/88 (15%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----D-----NPGSK 697 +EN+ VFT TL + R +AQ +T L +++ T ++ G D P K Sbjct: 2 LENEYFVFTSTLTTMIRKQAQSIITGLKGHNQNSVTKNTTRLVTGYFPIDLIKGYRPSQK 61 Query: 698 L---EKAQQLG--VKIMNEEQFLFLLQQ 720 L ++A+Q G + +M E+QF+ L Q Sbjct: 62 LSEAKQAEQRGQQIIMMTEKQFIDFLAQ 89 >gi|218659837|ref|ZP_03515767.1| NAD-dependent DNA ligase LigA [Rhizobium etli IE4771] Length = 39 Score = 55.6 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 13/27 (48%), Positives = 22/27 (81%) Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLL 718 GSKL+KA++LGV+ M+E+++L L+ Sbjct: 11 PGAGSKLDKARELGVQTMDEDEWLALI 37 >gi|311896062|dbj|BAJ28470.1| putative exonuclease [Kitasatospora setae KM-6054] Length = 617 Score = 55.6 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GS-KLEKAQQL 704 ++ K+ TG R + G V + +SR T +++ D GS K +A Sbjct: 225 VQGVKIAITGE-TAASRAELVARAVAAGLNVMSSVSRHTGVLVTNDTASGSAKARRAAAE 283 Query: 705 GVKIMNEEQFLFLLQQ 720 G+ +++E FL LL Sbjct: 284 GITVVDEPTFLKLLAD 299 >gi|300858788|ref|YP_003783771.1| hypothetical protein cpfrc_01371 [Corynebacterium pseudotuberculosis FRC41] gi|300686242|gb|ADK29164.1| hypothetical protein cpfrc_01371 [Corynebacterium pseudotuberculosis FRC41] gi|302206493|gb|ADL10835.1| Putative DNA polymerase III epsilon subunit [Corynebacterium pseudotuberculosis C231] gi|302331048|gb|ADL21242.1| Putative DNA polymerase III epsilon subunit [Corynebacterium pseudotuberculosis 1002] gi|308276735|gb|ADO26634.1| Putative DNA polymerase III epsilon subunit [Corynebacterium pseudotuberculosis I19] Length = 453 Score = 55.6 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 38/93 (40%), Gaps = 7/93 (7%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + + + + + + TG + + K + + + G + +++KT I++ G Sbjct: 350 TVPEANLDADPHGRLFQQNVTLTGDFEPFDKGKLWDSIAEQGGTIGKNVTKKTTILVCGP 409 Query: 693 NPG--SKLEKAQQL-----GVKIMNEEQFLFLL 718 SK ++A++L ++I E L Sbjct: 410 WASKTSKQKRAEELIDKGQNIQIWTAEDLFAQL 442 >gi|296117576|ref|ZP_06836160.1| DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes DSM 20306] gi|295969307|gb|EFG82548.1| DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes DSM 20306] Length = 467 Score = 55.2 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + + + +S + + + TG + + + G V +++KT I+++G+ Sbjct: 367 TIPDPNPDADKNSPLYGQHVTLTGDFEPFDKGVLWNGIAHHGGQVGKNVTKKTTILVLGE 426 Query: 693 --NPGSKLEKAQQLG 705 SK ++A +L Sbjct: 427 WATTTSKEKRADELN 441 >gi|227503316|ref|ZP_03933365.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC 49725] gi|227075819|gb|EEI13782.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC 49725] Length = 470 Score = 55.2 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 40/94 (42%), Gaps = 7/94 (7%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + + + + + + TG + + + + + G V +++KT +++VG+ Sbjct: 370 TIPDPNLDADPQGALYGQHVTLTGDFEPYDKGLLWQGIAKRGGQVGKNVTKKTTLLVVGE 429 Query: 693 --NPGSKLEKAQQL-----GVKIMNEEQFLFLLQ 719 SK ++A++L + + + Q L+ Sbjct: 430 WAKKTSKEKRAEELQEKGQDITMWSGAQLFSELE 463 >gi|33322831|gb|AAQ07151.1|AF496461_1 DNA ligase [Lactobacillus delbrueckii subsp. lactis] Length = 128 Score = 55.2 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 18/141 (12%) Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 ++PV + G + A+LHN D + L D+R+G V + +AG++IP++ +++ Sbjct: 2 MDPVRLXGTTVARASLHNPDLLAKL-----------DVRLGXTVKLHKAGDIIPEISEVV 50 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 +++R D+ P+ P+ CP C +V A RC +C AQ E + HF S Sbjct: 51 LSKRPEDSVPYEVPTKCPSCGEDLVHLNEE------VALRCINP-SCPAQVEEGITHFAS 103 Query: 478 RDAFNIEGLGKQQLDFFFKSE 498 R A NI GLG + + + Sbjct: 104 RQAMNIAGLGPKIVKQLIAKD 124 >gi|217974210|ref|YP_002358961.1| BRCT domain-containing protein [Shewanella baltica OS223] gi|217499345|gb|ACK47538.1| BRCT domain protein [Shewanella baltica OS223] Length = 298 Score = 55.2 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 23/88 (26%) Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK-----TDIIIVG---------DN 693 K FTG + R + LGA + +K T ++VG + Sbjct: 213 TGKGFCFTGKFKTDNRTNIEAKAKSLGANII----KKTPTLATHYVVVGSLSSRDWAYSS 268 Query: 694 PGSKLE-----KAQQLGVKIMNEEQFLF 716 G+K++ +A+ + I++E+Q+L Sbjct: 269 HGTKIQHAKQMQAKGYDIAIISEDQWLA 296 >gi|109289969|ref|YP_655501.1| hypothetical protein MhaA1p34 [Mannheimia phage phiMHaA1] gi|254360843|ref|ZP_04976990.1| hypothetical protein MHA_0409 [Mannheimia haemolytica PHL213] gi|90110575|gb|ABD90585.1| hypothetical protein [Mannheimia phage phiMhaA1-PHL101] gi|90110626|gb|ABD90635.1| hypothetical protein [Mannheimia phage phiMhaA1-BAA410] gi|153092317|gb|EDN73386.1| hypothetical protein MHA_0409 [Mannheimia haemolytica PHL213] Length = 172 Score = 55.2 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 11/74 (14%) Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII-------VGDNPGSKLEKAQQLG 705 FTG ++ ++++ + V ++ D +I VG KL KA++LG Sbjct: 97 CFTG-FKQARKNELIQLAVDNDLRVVQNVTGAVDFLIFDKESKTVGPA---KLAKAEKLG 152 Query: 706 VKIMNEEQFLFLLQ 719 +KI+++E+FL++L+ Sbjct: 153 IKIIDDEEFLYMLE 166 >gi|239917363|ref|YP_002956921.1| exonuclease, DNA polymerase III, epsilon subunit family [Micrococcus luteus NCTC 2665] gi|281414154|ref|ZP_06245896.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Micrococcus luteus NCTC 2665] gi|239838570|gb|ACS30367.1| exonuclease, DNA polymerase III, epsilon subunit family [Micrococcus luteus NCTC 2665] Length = 381 Score = 54.8 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 1/67 (1%) Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 E + + + +VFTG + + R A+ GA + + T Sbjct: 254 RWPDEGVNPPPNPAADPGHPLFGQTVVFTGGI-GMSRQSAKTRAAAQGAQTANRVGAATT 312 Query: 687 IIIVGDN 693 +++VGD Sbjct: 313 MLVVGDG 319 >gi|145639951|ref|ZP_01795550.1| hypothetical protein CGSHiII_06993 [Haemophilus influenzae PittII] gi|145270917|gb|EDK10835.1| hypothetical protein CGSHiII_06993 [Haemophilus influenzae PittII] gi|309751665|gb|ADO81649.1| Hypothetical protein R2866_1731 [Haemophilus influenzae R2866] Length = 168 Score = 54.8 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 22/123 (17%) Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRH--------EKNVSSEIENKKLVFTGTLQKIQR 663 I EF E L +E+ + K + + FTG + Sbjct: 47 IKEFVNFDDAQHYAENLPEEIFTQFDQKLNAIKRIPSKPIQHPL---TFCFTG----FSK 99 Query: 664 HKAQEYV---TQLGAVVSAILSRKTDIIIVGDNP---G-SKLEKAQQLGVKIMNEEQFLF 716 + Q + Q+G ++ K D +++ +N G SK KA+ LGVK++ E QF Sbjct: 100 AQKQALIDLTIQVGLRAIQDVTSKCDYLVMCENSKTIGPSKRAKAESLGVKLIFENQFFH 159 Query: 717 LLQ 719 L++ Sbjct: 160 LIE 162 >gi|194467815|ref|ZP_03073801.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23] gi|194452668|gb|EDX41566.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23] Length = 283 Score = 54.8 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 22/103 (21%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSA-----ILSRKTDIIIV 690 + ++ + FTG+ ++ R + + + + G V + TD +I+ Sbjct: 185 KKDIDVTNNSLSGAHFAFTGSFKEFPDRKEITKLIIKNGGYVPNGHRCTSV---TDFLIL 241 Query: 691 GDNPGS-----KLEK-------AQQLGVKIMNEEQFLFLLQQY 721 G P + K K A + I+ +F+ +L + Sbjct: 242 G-KPTARNLTDKANKRRQSMINALKYNTNIITANEFISMLGEK 283 >gi|152987028|ref|YP_001347760.1| NAD-dependent DNA ligase [Pseudomonas aeruginosa PA7] gi|150962186|gb|ABR84211.1| NAD-dependent DNA ligase [Pseudomonas aeruginosa PA7] Length = 216 Score = 54.8 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 14/78 (17%) Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NP-GSKLEKAQQ 703 VFTG + R +E V G +++ +S+K ++VG+ + G+K+++A + Sbjct: 133 VFTGVMVYGPRKHCEEIVVNRGGGIASGISKKVHYLVVGEIGNEQWLHSTYGTKIKRAVE 192 Query: 704 L---G--VKIMNEEQFLF 716 L G + I++E+ + Sbjct: 193 LREEGHPIAIISEKHWQA 210 >gi|322807500|emb|CBZ05075.1| DNA ligase [Clostridium botulinum H04402 065] Length = 117 Score = 54.8 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 13/126 (10%) Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 + I ++I RN + L V+P SI N+ K TG L K Sbjct: 3 EEIVESI------KRNKVLLVNLFMYVNPISIDEKNANIKRY----KFSITGVLNKDT-S 51 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQYNT 723 +E + + +V +++ D ++ GD + K+ A++ ++++E Q + +L++ Sbjct: 52 YYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTRLISERQLVDILKEIKE 111 Query: 724 TLRIHD 729 ++ + Sbjct: 112 NNKMKN 117 >gi|303318881|ref|XP_003069440.1| Poly(ADP-ribose) polymerase domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240109126|gb|EER27295.1| Poly(ADP-ribose) polymerase domain containing protein [Coccidioides posadasii C735 delta SOWgp] Length = 707 Score = 54.8 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 5/69 (7%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----DNPGSKLEKAQ 702 +NK +V +GT ++ + + G SA ++ ++ +N G+K ++A Sbjct: 5 FKNKTVVLSGTFPGYKQADLKNLIETNGGTFSAKVTDDCTHLVCTQKEFENNGTKNKQAS 64 Query: 703 QL-GVKIMN 710 + G+ I++ Sbjct: 65 SVTGISIVS 73 >gi|289772455|ref|ZP_06531833.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] gi|289702654|gb|EFD70083.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] Length = 330 Score = 54.8 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 7/76 (9%) Query: 649 NKKLVFTG--TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPG-SKLEKAQQL 704 ++ F+G +++ R ++ + G V+ LSR T +++ D + G SK+ KA+Q Sbjct: 252 GMRVAFSGDTSVE---RDLLEDRAVEAGLHVATSLSRLTSLLVTNDPDSGTSKVVKARQF 308 Query: 705 GVKIMNEEQFLFLLQQ 720 G +++E F LL Sbjct: 309 GTPVVDEAAFGQLLAD 324 >gi|21220316|ref|NP_626095.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)] gi|256788562|ref|ZP_05526993.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] gi|6117870|emb|CAB59443.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7) [Streptomyces coelicolor A3(2)] Length = 328 Score = 54.8 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 7/76 (9%) Query: 649 NKKLVFTG--TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPG-SKLEKAQQL 704 ++ F+G +++ R ++ + G V+ LSR T +++ D + G SK+ KA+Q Sbjct: 250 GMRVAFSGDTSVE---RDLLEDRAVEAGLHVATSLSRLTSLLVTNDPDSGTSKVVKARQF 306 Query: 705 GVKIMNEEQFLFLLQQ 720 G +++E F LL Sbjct: 307 GTPVVDEAAFGQLLAD 322 >gi|290962326|ref|YP_003493508.1| DNA polymerase III subunit epsilon [Streptomyces scabiei 87.22] gi|260651852|emb|CBG74981.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7) [Streptomyces scabiei 87.22] Length = 613 Score = 54.8 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 4/79 (5%) Query: 644 SSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-DNPGS-KLEK 700 + + K+ TG ++ R + G + +S +T +++ GS KL++ Sbjct: 219 GGPLVQGMKVAITGD-TRVSREELVARSVAAGLNMMTSVSGQTSVVVTNAPGTGSAKLKR 277 Query: 701 AQQLGVKIMNEEQFLFLLQ 719 A GV +++E +L LL+ Sbjct: 278 AADEGVPLVDEPTYLRLLK 296 >gi|126173505|ref|YP_001049654.1| hypothetical protein Sbal_1267 [Shewanella baltica OS155] gi|125996710|gb|ABN60785.1| hypothetical protein Sbal_1267 [Shewanella baltica OS155] Length = 205 Score = 54.4 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGV 706 ++ FTG K R +E T G +V ++R I+ G N G K+ A+ G Sbjct: 2 AGLEVCFTG-FAKQSRSDLEELATDSGFIVRKAVTRNLHILCAGSNAGPKKVADAKADGA 60 Query: 707 KIMNEEQFLFLL 718 I+ E F+ L+ Sbjct: 61 AILLENDFIALV 72 >gi|239932092|ref|ZP_04689045.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] gi|291440458|ref|ZP_06579848.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] gi|291343353|gb|EFE70309.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] Length = 327 Score = 54.4 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 7/76 (9%) Query: 649 NKKLVFTG--TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPG-SKLEKAQQL 704 ++ F+G +++ R ++ T+ G V+ LSR T +++ D + G SK KA+Q Sbjct: 248 GMRVAFSGDTSVE---RELLEDRATEAGLHVATSLSRLTSLLVTNDPDSGTSKAVKARQY 304 Query: 705 GVKIMNEEQFLFLLQQ 720 G +++E F LL+ Sbjct: 305 GTPVVDEAAFGQLLED 320 >gi|318057718|ref|ZP_07976441.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG] gi|318079748|ref|ZP_07987080.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF] gi|333028027|ref|ZP_08456091.1| putative DNA polymerase III subunit epsilon [Streptomyces sp. Tu6071] gi|332747879|gb|EGJ78320.1| putative DNA polymerase III subunit epsilon [Streptomyces sp. Tu6071] Length = 331 Score = 54.4 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 4/88 (4%) Query: 644 SSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPG-SKLEK 700 + + ++ F+G +R ++ T+ G V+ +SR T +++ D + G SK + Sbjct: 244 GQPLVQGMRIAFSGDTST-ERELLEDRATEAGLHVAGSISRLTSLLVTNDPDSGTSKTVR 302 Query: 701 AQQLGVKIMNEEQFLFLLQQYNTTLRIH 728 A+Q G +++E F LL+ +R+ Sbjct: 303 ARQYGTPVIDEAAFGQLLRDVAPAVRVE 330 >gi|302518301|ref|ZP_07270643.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78] gi|302427196|gb|EFK99011.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78] Length = 329 Score = 54.4 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 4/88 (4%) Query: 644 SSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPG-SKLEK 700 + + ++ F+G +R ++ T+ G V+ +SR T +++ D + G SK + Sbjct: 242 GQPLVQGMRIAFSGDTST-ERELLEDRATEAGLHVAGSISRLTSLLVTNDPDSGTSKTVR 300 Query: 701 AQQLGVKIMNEEQFLFLLQQYNTTLRIH 728 A+Q G +++E F LL+ +R+ Sbjct: 301 ARQYGTPVIDEAAFGQLLRDVAPAVRVE 328 >gi|149926285|ref|ZP_01914547.1| NAD-dependent DNA ligase (contains BRCT domain type II)-like protein [Limnobacter sp. MED105] gi|149825103|gb|EDM84315.1| NAD-dependent DNA ligase (contains BRCT domain type II)-like protein [Limnobacter sp. MED105] Length = 286 Score = 54.4 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 17/86 (19%) Query: 647 IENKKLVFTGTLQKIQ--RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------G 695 IE LVFTG R +E V LG V+ A ++ KT+ ++VGD G Sbjct: 193 IEGSVLVFTGKFGGKTGFRKVIEERVVGLGGVLRASVTTKTNYLVVGDETAVGWITSTYG 252 Query: 696 SKLEKAQQL------GVKIMNEEQFL 715 K++ A L ++++ E+ Sbjct: 253 RKIQAAMDLRKADAPNLRVLTEQNLR 278 >gi|255325307|ref|ZP_05366413.1| DNA polymerase III epsilon subunit [Corynebacterium tuberculostearicum SK141] gi|255297872|gb|EET77183.1| DNA polymerase III epsilon subunit [Corynebacterium tuberculostearicum SK141] Length = 443 Score = 54.4 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + + + + + + TG + + + + + G V+ +++K+ ++IVG+ Sbjct: 343 TIPEPNPDADPEGALYGQHVTLTGDFEPYDKGVLWQGIAERGGQVAKNVTKKSTLLIVGE 402 Query: 693 --NPGSKLEKAQQL 704 SK ++A++L Sbjct: 403 WAKKTSKEKRAEEL 416 >gi|311741567|ref|ZP_07715391.1| probable DNA polymerase III epsilon subunit [Corynebacterium pseudogenitalium ATCC 33035] gi|311303737|gb|EFQ79816.1| probable DNA polymerase III epsilon subunit [Corynebacterium pseudogenitalium ATCC 33035] Length = 442 Score = 54.4 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + + + + + + TG + + + + + G V+ +++K+ ++IVG+ Sbjct: 342 TIPEPNPDADPEGALYGQHVTLTGDFEPYDKGVLWQGIAERGGQVAKNVTKKSTLLIVGE 401 Query: 693 --NPGSKLEKAQQL 704 SK ++A++L Sbjct: 402 WAKKTSKEKRAEEL 415 >gi|167567824|ref|ZP_02360740.1| Transposase and inactivated derivatives-like protein [Burkholderia oklahomensis EO147] Length = 248 Score = 54.4 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 15/92 (16%) Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-----PG- 695 N + +++VFTGTL ++R +A G V A + + T +++VGD G Sbjct: 155 NPDGVLAGEEMVFTGTLTLLRR-EAAALAAMAGCDVVASVRKTTTLLVVGDQDIQRLAGH 213 Query: 696 --S-KLEKAQQL---G--VKIMNEEQFLFLLQ 719 S K +KA++L G ++I+ E FL ++ Sbjct: 214 EKSLKHQKAEELIAKGQAIRILKESDFLRIVN 245 >gi|32396683|gb|AAP49298.1| NAD-dependent DNA ligase [Bacillus coagulans] Length = 121 Score = 54.4 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 52/121 (42%), Positives = 76/121 (62%), Gaps = 1/121 (0%) Query: 214 ANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 ANPRNAA+G LR+L+P +R L+ FV+GL E+ + E L ++ LGF VN Sbjct: 1 ANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELGIESHSEALDYLQALGFKVNPER 60 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 R+ ++++ NE R LPY+IDG+V KVD F+ Q++LG A+SPRW I++KF Sbjct: 61 RRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFAQQRELGATAKSPRWAIAYKFPA 120 Query: 333 K 333 + Sbjct: 121 E 121 >gi|291450661|ref|ZP_06590051.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074] gi|291353610|gb|EFE80512.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074] Length = 345 Score = 54.4 bits (129), Expect = 8e-05, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 3/82 (3%) Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPG-SKL 698 + ++ ++ F+G +R ++ T+ G V+ LSR T +++ D + G SK Sbjct: 258 EPGGRLVQGMRIAFSGDTST-ERDLLEDRATEAGLHVATSLSRLTSLLVTNDPDSGTSKT 316 Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720 KA+Q G +++E F LLQ Sbjct: 317 VKARQFGTPVVDEAAFGQLLQD 338 >gi|239978772|ref|ZP_04701296.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074] Length = 324 Score = 54.4 bits (129), Expect = 8e-05, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 3/82 (3%) Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPG-SKL 698 + ++ ++ F+G +R ++ T+ G V+ LSR T +++ D + G SK Sbjct: 237 EPGGRLVQGMRIAFSGDTST-ERDLLEDRATEAGLHVATSLSRLTSLLVTNDPDSGTSKT 295 Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720 KA+Q G +++E F LLQ Sbjct: 296 VKARQFGTPVVDEAAFGQLLQD 317 >gi|261492599|ref|ZP_05989152.1| hypothetical protein COK_1023 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494901|ref|ZP_05991373.1| hypothetical protein COI_0690 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309437|gb|EEY10668.1| hypothetical protein COI_0690 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311758|gb|EEY12908.1| hypothetical protein COK_1023 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 172 Score = 54.4 bits (129), Expect = 8e-05, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 11/74 (14%) Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII-------VGDNPGSKLEKAQQLG 705 FTG ++ ++++ + V ++ D +I VG KL KA++LG Sbjct: 97 CFTG-FKQARKNELIQLAVDNDLRVVQNVTGAVDFLIFDKESKTVGPA---KLAKAEKLG 152 Query: 706 VKIMNEEQFLFLLQ 719 +KI+N+E+FL++L+ Sbjct: 153 IKIINDEEFLYMLE 166 >gi|300812825|ref|ZP_07093220.1| conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496161|gb|EFK31288.1| conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 54 Score = 54.0 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Query: 669 YVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G V+ +S TD ++ G+ + K +KA + G ++ E + LLQ+ Sbjct: 1 MIQSHGGKVTGSVSGVTDYLLKGELDHVTGKCKKAVEKGTAVIGYEDLMLLLQK 54 >gi|227504725|ref|ZP_03934774.1| DNA polymerase III epsilon subunit [Corynebacterium striatum ATCC 6940] gi|227198735|gb|EEI78783.1| DNA polymerase III epsilon subunit [Corynebacterium striatum ATCC 6940] Length = 451 Score = 54.0 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 12/79 (15%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-----RHKAQEYVTQLGAVVSAILSRKTDI 687 + + + + + + TG + R + + G V +++KT I Sbjct: 351 TIPDPNLDADPEGALFGQNVTLTGEFEPFDKGLLWRS-----IAERGGQVGKNVTKKTTI 405 Query: 688 IIVGDNP--GSKLEKAQQL 704 +++G+ SK ++A++L Sbjct: 406 LVLGEWATKTSKEKRAEEL 424 >gi|239944923|ref|ZP_04696860.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998] gi|239991387|ref|ZP_04712051.1| DNA polymerase III [Streptomyces roseosporus NRRL 11379] gi|291448385|ref|ZP_06587775.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291351332|gb|EFE78236.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 641 Score = 54.0 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 4/82 (4%) Query: 642 NVSSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GS-KL 698 + + K+ TG R + G + +SR T +++ + GS K+ Sbjct: 220 ASDGPLRQGMKVAITGE-TAHARAELVGRAVAAGLNMMTSVSRHTSVLVTNEPASGSAKV 278 Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720 +A GV +++E FL +L Sbjct: 279 RRALTEGVPVIDEHTFLRMLAD 300 >gi|207110372|ref|ZP_03244534.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_CA4C1] Length = 108 Score = 54.0 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 11/119 (9%) Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348 R +DG+V V+E +QK+LG +SP++ ++KF + T+++ + Q+GR Sbjct: 1 MREREGFFALLDGMVIVVNELGIQKELGYTQKSPKFACAYKFPALEKHTKIIGVINQVGR 60 Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407 +G +TPVA LEP+ I GA++T ATLHN I+ ++I + DRV+V R+G Sbjct: 61 SGAITPVALLEPIEIAGAMVTKATLHNYSEIEK-----------KNIMLNDRVVVIRSG 108 >gi|297157618|gb|ADI07330.1| NAD-dependent DNA ligase LigA [Streptomyces bingchenggensis BCW-1] Length = 858 Score = 54.0 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%) Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-PGSKLEKAQQLGVKIMNEEQFL 715 L A+ + LGA VS +S +TD++ + PG K+ A G+ I +E+ Sbjct: 6 KLPHTT---AKAGLEALGARVSGSVSDRTDLVFAAHDVPGRKIGAASTRGIPIYDEKALR 62 Query: 716 FLLQ 719 +L+ Sbjct: 63 AVLK 66 >gi|84488969|ref|YP_447201.1| 3'-5' exonuclease [Methanosphaera stadtmanae DSM 3091] gi|84372288|gb|ABC56558.1| predicted 3'-5' exonuclease [Methanosphaera stadtmanae DSM 3091] Length = 445 Score = 54.0 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 16/106 (15%) Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684 V + E+ I +++ +E K TG + + K + + G + +S K Sbjct: 337 VSKMFLELLSPIKTTVESLD--LEGKTYCLTGDFKHGNKAKIVSILEKRGLIKKNCVSYK 394 Query: 685 TDIIIVGD---------NPGSKLEKAQQL-----GVKIMNEEQFLF 716 D + VGD N G K+ KAQQ+ +KI++E+ Sbjct: 395 LDYLFVGDYGSPAWKYGNIGGKIVKAQQIIDKGAKIKIISEKNLFN 440 >gi|332084531|gb|EGI89726.1| NAD-dependent DNA ligase adenylation domain protein [Shigella dysenteriae 155-74] Length = 355 Score = 54.0 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 58/383 (15%), Positives = 114/383 (29%), Gaps = 58/383 (15%) Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + + L+++ GF + +A + + ++ LP+ DG+ Sbjct: 16 FVWAWPDGPQLMTDRLKELATAGFTLTQTYTRAVKNADE-VAHVRNEWWKARLPFVTDGV 74 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V + + W+++ K+ + I +G++G ++ VA L PV Sbjct: 75 VVRAAKEPESHHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 132 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + + + DI GD++LV AG+ IP++ Sbjct: 133 LDDKKVQRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------- 173 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAF 481 + R + C C Q + RL S+ Sbjct: 174 ------------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVL 221 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 ++G+G+ ++ L Q +T G L+ Sbjct: 222 GLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQ 271 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 N R R++ ++GI A A S+ W L Sbjct: 272 FNLARKQPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL--- 318 Query: 602 PLVGDIIAQAIVEFYQNPRNICA 624 P G A+ ++E+ +N + Sbjct: 319 PGTGSGRARQVIEWKENAQIKKL 341 >gi|114048081|ref|YP_738631.1| NAD-dependent DNA ligase [Shewanella sp. MR-7] gi|113889523|gb|ABI43574.1| NAD-dependent DNA ligase (contains BRCT domain type II)-like protein [Shewanella sp. MR-7] Length = 298 Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 23/84 (27%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK-----TDIIIVG---------DNPGSK 697 FTG ++++R + ++ LGAV++ +K TD ++VG + G K Sbjct: 217 FCFTGKFKQLKRVQLEDKAKSLGAVIA----KKIPTLSTDYVVVGSLSSRDWLYSSHGLK 272 Query: 698 LEKAQQLG-----VKIMNEEQFLF 716 ++ A+++ + I++E+Q+L Sbjct: 273 IQHAKKMQESGHHISIISEDQWLA 296 >gi|320168366|gb|EFW45265.1| DNA ligase [Capsaspora owczarzaki ATCC 30864] Length = 881 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 8/90 (8%) Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694 + + + TG + + R + + + G V+ ++ +I Sbjct: 153 NEDEDGNPSTRALAGMTFCLTGAMS-VTRKVMTKLIQRHGGRVANTVTGAVTHLISAVEG 211 Query: 695 GSKLEKAQQL---GVKIMNEEQFL-FLLQQ 720 SK ++A L V I +E +F+ L+ + Sbjct: 212 TSKHDRA--LLRDDVAIESE-EFIHDLISK 238 >gi|117921128|ref|YP_870320.1| NAD-dependent DNA ligase [Shewanella sp. ANA-3] gi|117613460|gb|ABK48914.1| NAD-dependent DNA ligase (contains BRCT domain type II)-like protein [Shewanella sp. ANA-3] Length = 298 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 23/84 (27%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK-----TDIIIVG---------DNPGSK 697 FTG ++++R + ++ LGAV++ +K TD ++VG + G K Sbjct: 217 FCFTGKFKQLKRVQLEDKAKSLGAVIA----KKIPTLSTDYVVVGSLSSRDWLYSSHGLK 272 Query: 698 LEKAQQLG-----VKIMNEEQFLF 716 ++ A+++ + I++E+Q+L Sbjct: 273 IQHAKKMQESGHHISIISEDQWLA 296 >gi|302554712|ref|ZP_07307054.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736] gi|302472330|gb|EFL35423.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736] Length = 623 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 4/79 (5%) Query: 644 SSEIE-NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEK 700 + K+ TG ++ R + G + +S +T +++ D KL + Sbjct: 232 GGPLTQGMKVAITGD-TQVSREELVARSVAAGLNMMTSVSGQTSVVVTNDPSTASGKLRR 290 Query: 701 AQQLGVKIMNEEQFLFLLQ 719 A GV +++E +L LL+ Sbjct: 291 AADEGVPLLDEPMYLRLLE 309 >gi|213965286|ref|ZP_03393483.1| putative DNA polymerase III epsilon subunit [Corynebacterium amycolatum SK46] gi|213952138|gb|EEB63523.1| putative DNA polymerase III epsilon subunit [Corynebacterium amycolatum SK46] Length = 545 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 42/89 (47%), Gaps = 7/89 (7%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG- 691 + + + S + +++ TG + + + GA ++ +++KT I++ G Sbjct: 404 TIPDPNPDADPSGLLYQQRVTLTGDFAPYDKGFLWDKIAFAGANINKGVTKKTTILVAGP 463 Query: 692 -DNPGSKLEKAQQLG-----VKIMNEEQF 714 D+ SK ++A+QL ++I E++ Sbjct: 464 WDSVTSKEKRARQLQAEGQEIQIWTEKEL 492 >gi|289679599|ref|ZP_06500489.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae FF5] Length = 109 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 43/120 (35%), Positives = 62/120 (51%), Gaps = 17/120 (14%) Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + NATLHN D + L + +GD V+++RAG+VIP+VV ++ R +A+ Sbjct: 1 VANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENARA 49 Query: 428 FSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 P CP+C S V R +T A +RC G LAC AQ + + H+VSR A Sbjct: 50 VQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAL 109 >gi|123479162|ref|XP_001322740.1| differentiation specific element binding protein [Trichomonas vaginalis G3] gi|121905592|gb|EAY10517.1| differentiation specific element binding protein, putative [Trichomonas vaginalis G3] Length = 694 Score = 53.3 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 10/88 (11%) Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG------ 691 + ++ +GTL R + ++ +T G + A + DI + G Sbjct: 64 PVPSPKPGSLTGIRICASGTLPHFTRAEVRDLITACGGTLQAAIKDNVDIFLRGCLNVSQ 123 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 D KL A + G+ +++EE L +L Sbjct: 124 D----KLNSALKKGISVIDEEGLLAMLA 147 >gi|320179984|gb|EFW54926.1| DNA ligase , LigB [Shigella boydii ATCC 9905] gi|332084828|gb|EGI90011.1| NAD-dependent DNA ligase adenylation domain protein [Shigella boydii 5216-82] Length = 355 Score = 53.3 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 58/383 (15%), Positives = 115/383 (30%), Gaps = 58/383 (15%) Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + + L+++ GF + +A + + ++ LP+ DG+ Sbjct: 16 FVWAWPDGPQLMTDRLKELATAGFTLTQTYTRAVKNADE-VAHVRNEWWKARLPFVTDGV 74 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V + + + W+++ K+ + I +G++G ++ VA L PV Sbjct: 75 VVRAAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 132 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + + + DI GD++LV AG+ IP++ Sbjct: 133 LDDKKVQRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------- 173 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAF 481 + R + C C Q + RL S+ Sbjct: 174 ------------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVL 221 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 ++G+G+ ++ L Q +T G L+ Sbjct: 222 GLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQ 271 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 N R R++ ++GI A A S+ W L Sbjct: 272 FNLARKQPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL--- 318 Query: 602 PLVGDIIAQAIVEFYQNPRNICA 624 P G A+ ++E+ +N + Sbjct: 319 PGTGSGRARQVIEWKENAQIKKL 341 >gi|227505453|ref|ZP_03935502.1| possible exonuclease, RNase T and DNA polymerase III [Corynebacterium striatum ATCC 6940] gi|227197946|gb|EEI77994.1| possible exonuclease, RNase T and DNA polymerase III [Corynebacterium striatum ATCC 6940] Length = 1118 Score = 53.3 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 4/86 (4%) Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLG 705 ++ FTG + R + + +G V +++K+ +++ D+ K KA++ G Sbjct: 326 AGDRVTFTGQFD-LPREEWERRAMAVGLSVGG-VTKKSVLLVAANPDSMSGKARKAREYG 383 Query: 706 VKIMNEEQFLFLLQQYNTTLRIHDDD 731 V I+ E F LL + ++ + D Sbjct: 384 VPIIGETAFARLLSNMSGGGQLVEQD 409 >gi|32396688|gb|AAP49300.1| NAD-dependent DNA ligase [Bacillus circulans] Length = 121 Score = 53.3 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 50/121 (41%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 214 ANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 ANPRNAA+G LR+L+P +R+L+ FV+ L E+ L ++ LGF VN Sbjct: 1 ANPRNAAAGSLRQLDPKIAASRHLDLFVYSLANAEELGIDSHSAALDYLQTLGFKVNPER 60 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 R+ ++ + +E RS LPYDIDG+V KVD F Q+ +G A+SPRW I++KF Sbjct: 61 RRCANIDEVIRFVSEWHEKRSHLPYDIDGIVIKVDSFEQQESVGATAKSPRWAIAYKFPA 120 Query: 333 K 333 + Sbjct: 121 E 121 >gi|302561385|ref|ZP_07313727.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus Tu4000] gi|302479003|gb|EFL42096.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus Tu4000] Length = 314 Score = 53.3 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%) Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGV 706 ++ F+G +R ++ + G V+ LSR T +++ ++ SK+ KA+Q G Sbjct: 235 GMRVAFSGDTST-ERDLLEDRAAEAGLHVATSLSRLTSLLVTNDPESGTSKVVKARQYGT 293 Query: 707 KIMNEEQFLFLLQQYNTT 724 +++E F LL Sbjct: 294 PVVDEAAFGQLLGDVEAA 311 >gi|85814043|emb|CAH05238.1| DNA polymerase III, epsilon subunit [Micromonospora echinospora] Length = 386 Score = 53.3 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 3/75 (4%) Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLG 705 N +VFTG+++ R + +E G V ++RKT + + D + K ++A++ G Sbjct: 308 ANDVVVFTGSMEP-ARDQWEEQARSAGLQVGKSVTRKTRLTVAADPDSMSGKAKQARRYG 366 Query: 706 VKIMNEEQFLFLLQQ 720 + I++ + LL Sbjct: 367 IPIVHPSGYQRLLAD 381 >gi|88799180|ref|ZP_01114760.1| NAD-dependent DNA ligase (contains BRCT domain type II)-like protein [Reinekea sp. MED297] gi|88778163|gb|EAR09358.1| NAD-dependent DNA ligase (contains BRCT domain type II)-like protein [Reinekea sp. MED297] Length = 296 Score = 53.3 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 19/151 (12%), Positives = 52/151 (34%), Gaps = 35/151 (23%) Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 + + + + +++ L + + AQ E+ + Sbjct: 158 EKILEDGVISSDESNELLTTLNDIS---AQKFWEYGAV------------GGLTTAFLKN 202 Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP------ 694 + + + + FTG+ R + +GA++S +++ D +++G+ Sbjct: 203 DELPYSFKGRSVCFTGSFVSGTRRRHATIAESIGALISKSVTKNLDYLVIGNVASRDWIQ 262 Query: 695 ---GSKLEK--------AQQLGVKIMNEEQF 714 G K+E A+ +I+ E+ + Sbjct: 263 KSYGRKIETVIKNRNEGAK---TRILTEKDW 290 >gi|167623231|ref|YP_001673525.1| hypothetical protein Shal_1298 [Shewanella halifaxensis HAW-EB4] gi|167353253|gb|ABZ75866.1| hypothetical protein Shal_1298 [Shewanella halifaxensis HAW-EB4] Length = 396 Score = 53.3 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 14/79 (17%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSKLEKA- 701 FTG + R + LGA+ S + T +++G G K+EKA Sbjct: 316 FCFTGKFKTGSRKTVESKAQSLGAITSKDVLLSTQFLVIGTLASRDWKYLSHGRKIEKAM 375 Query: 702 --QQLG--VKIMNEEQFLF 716 ++ G + +++EEQ+L Sbjct: 376 LLKEKGHEIYVISEEQWLA 394 Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 2/64 (3%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 + FTG ++R++ + +G V ++ I+ VGDN G SK++K+ + G I++ Sbjct: 6 ICFTG-FNAVERNELETLGELVGLSVKKNVTNSLHILCVGDNAGPSKIDKSLEGGSVIID 64 Query: 711 EEQF 714 + QF Sbjct: 65 KPQF 68 >gi|302533719|ref|ZP_07286061.1| DNA polymerase III subunit epsilon [Streptomyces sp. C] gi|302442614|gb|EFL14430.1| DNA polymerase III subunit epsilon [Streptomyces sp. C] Length = 332 Score = 52.9 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 3/74 (4%) Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGV 706 ++ F+G + R ++ + G ++ +SR T +++ D + SK +A+ G Sbjct: 253 GMRIAFSGD-TSVDRELLEDRAVEAGLHIATSVSRLTSLLVTNDPDSSTSKTVRAKSYGT 311 Query: 707 KIMNEEQFLFLLQQ 720 I++E F LL+ Sbjct: 312 PIVDEAAFTQLLRD 325 >gi|302550499|ref|ZP_07302841.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes DSM 40736] gi|302468117|gb|EFL31210.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes DSM 40736] Length = 330 Score = 52.9 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 3/74 (4%) Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPG-SKLEKAQQLGV 706 ++ F+G +R ++ T G V+ LSR T +++ D + G SK+ KA+Q G Sbjct: 251 GMRVAFSGDTST-ERELLEDRATDAGLHVATSLSRLTSLLVTNDPDSGTSKVVKARQFGT 309 Query: 707 KIMNEEQFLFLLQQ 720 +++E F LL Sbjct: 310 PVVDEAAFGQLLAD 323 >gi|157413924|ref|YP_001484790.1| hypothetical protein P9215_15911 [Prochlorococcus marinus str. MIT 9215] gi|157388499|gb|ABV51204.1| Hypothetical protein P9215_15911 [Prochlorococcus marinus str. MIT 9215] Length = 249 Score = 52.9 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 54/300 (18%), Positives = 88/300 (29%), Gaps = 71/300 (23%) Query: 36 YQYSKPIILDSEYDALKRRCDAIAHAF----PDLARSEDPNGPLNKIGGEMNLSLFKVTH 91 Y+ + II D + + F P+ N + L K + Sbjct: 16 YRIGEGIISDDAF-------KQLEKLFMHVDPESDYFNQKNS-------RVLPRLAKENY 61 Query: 92 SIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151 SL +++PKIDG I IRY GKF A Sbjct: 62 KEFLGSL------------------------LTKTRLSIQPKIDGCAIAIRYINGKFNKA 97 Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRK 211 +G DVS+ I+ I +P + K DF + + A + Sbjct: 98 IT----KTGFDVSSKIKQIKNVP---------------DCIPIKRDFQIRGE-LYATNQV 137 Query: 212 PYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 + R + L+F + QYE L ++ GF + Sbjct: 138 AGISKR---ITRKYLNDKKGFRESLSFCCFQILNGR----LNQYETLNYLKKCGFSTPDS 190 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR-WMISHKF 330 N I Y + Y +G+V K++ LQ + + W + + Sbjct: 191 YFT-NHTSEIQIYKKNWLERKIFTKYPTNGIVIKINSRKLQLLREKSLTKNKEWQYAIEK 249 >gi|88855710|ref|ZP_01130373.1| DNA polymerase III subunit epsilon [marine actinobacterium PHSC20C1] gi|88815034|gb|EAR24893.1| DNA polymerase III subunit epsilon [marine actinobacterium PHSC20C1] Length = 417 Score = 52.9 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 5/70 (7%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS---KLEKAQQLGVKI 708 +V TG + + R + + + G V ++++ +++ +P S K KA+ G+ + Sbjct: 348 IVLTGEMSR-TRDEIEATIVGFGFVPWRAVTKRVRLLVA-ADPDSLSGKARKARDYGIPV 405 Query: 709 MNEEQFLFLL 718 ++E + LL Sbjct: 406 VDEAGLVRLL 415 >gi|254526714|ref|ZP_05138766.1| NAD-dependent DNA ligase N-terminal domain protein [Prochlorococcus marinus str. MIT 9202] gi|221538138|gb|EEE40591.1| NAD-dependent DNA ligase N-terminal domain protein [Prochlorococcus marinus str. MIT 9202] Length = 249 Score = 52.9 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 55/300 (18%), Positives = 88/300 (29%), Gaps = 71/300 (23%) Query: 36 YQYSKPIILDSEYDALKRRCDAIAHAF----PDLARSEDPNGPLNKIGGEMNLSLFKVTH 91 Y+ K II D + + F P+ N + L K + Sbjct: 16 YRIGKGIISDDAF-------KQLEKLFMHVDPESDYFNQKNS-------SLLPKLAKENY 61 Query: 92 SIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151 SL +++PKIDG I IRY GKF A Sbjct: 62 KEFLGSL------------------------LTKTRLSIQPKIDGCAIAIRYINGKFNKA 97 Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRK 211 +G DVS+ I+ I +P + K DF + + A + Sbjct: 98 IT----KTGFDVSSKIKQIKNVP---------------DCIPIKRDFQIRGE-LYATNQV 137 Query: 212 PYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 + R + L+F + QYE L ++ GF + Sbjct: 138 AGISKR---ITRKYLNDKRGFGESLSFCCFQILNGR----LNQYETLNYLKKCGFSTPDS 190 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR-WMISHKF 330 N I Y + Y +G+V K++ LQ + + W + + Sbjct: 191 YFT-NHTSEIQIYKKNWLERKIFTKYPTNGIVIKINSRKLQLLREKSLPKNKEWQYAIEK 249 >gi|262196947|ref|YP_003268156.1| serine/threonine protein kinase [Haliangium ochraceum DSM 14365] gi|262080294|gb|ACY16263.1| serine/threonine protein kinase [Haliangium ochraceum DSM 14365] Length = 365 Score = 52.9 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 61/181 (33%), Gaps = 46/181 (25%) Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + + + + + + I D + L + G+ Sbjct: 213 AMLLRGDASERITLSTLKQIDISDKTVAVIRRAIGTRSKRYGDAYEMLQELEGRGEEAVP 272 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 AI ++ K + F+G L I+R A+ V Sbjct: 273 AIRS--------------------------------LQGKTVAFSGALS-IRRFDAEIMV 299 Query: 671 TQLGAVVSAILSRKTDIIIVG-----DNPG---SKLEKAQQL---G--VKIMNEEQFLFL 717 Q G V+ +SRK D+++ G +PG SKL + ++L G + ++ E +F L Sbjct: 300 LQAGGTVAHAISRKIDVLVQGGGRSPRSPGALNSKLRQTKRLIEQGQPICVIGEREFRQL 359 Query: 718 L 718 + Sbjct: 360 I 360 >gi|329940730|ref|ZP_08290010.1| exonuclease [Streptomyces griseoaurantiacus M045] gi|329300024|gb|EGG43922.1| exonuclease [Streptomyces griseoaurantiacus M045] Length = 336 Score = 52.5 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 4/81 (4%) Query: 642 NVSSEIE-NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPG-SKL 698 ++ ++ F+G + R ++ G V+ LSR T +++ D + G SK+ Sbjct: 240 EEGRPLKQGMRVAFSGD-TSVDRELLEDRAVDAGLHVATSLSRLTSLLVTNDPDSGTSKV 298 Query: 699 EKAQQLGVKIMNEEQFLFLLQ 719 KA+Q G +++E F LLQ Sbjct: 299 LKARQFGTPVVDEAAFGQLLQ 319 >gi|227501930|ref|ZP_03931979.1| possible exonuclease [Corynebacterium accolens ATCC 49725] gi|227077314|gb|EEI15277.1| possible exonuclease [Corynebacterium accolens ATCC 49725] Length = 1118 Score = 52.5 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 4/80 (5%) Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNE 711 FTG + R + + +G V +++K+ +++ D+ K KA++ GV I+ E Sbjct: 332 FTGQFD-LPREEWERRAMAVGLSVGG-VTKKSVLLVAANPDSMSGKARKAREYGVPIIGE 389 Query: 712 EQFLFLLQQYNTTLRIHDDD 731 F LL + ++ + D Sbjct: 390 TTFARLLGNMSGGGQLVEQD 409 >gi|17975108|ref|NP_536630.1| hypothetical protein K139p03 [Vibrio phage K139] gi|147671827|ref|YP_001215913.1| NAD-dependent DNA ligase [Vibrio cholerae O395] gi|153820796|ref|ZP_01973463.1| NAD-dependent DNA ligase [Vibrio cholerae B33] gi|165970237|ref|YP_001650868.1| putative NAD-dependent DNA ligase [Vibrio phage kappa] gi|229512069|ref|ZP_04401548.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Vibrio cholerae B33] gi|229519205|ref|ZP_04408648.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Vibrio cholerae RC9] gi|229607240|ref|YP_002877888.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Vibrio cholerae MJ-1236] gi|254849313|ref|ZP_05238663.1| NAD-dependent DNA ligase [Vibrio cholerae MO10] gi|262167834|ref|ZP_06035535.1| hypothetical protein VIJ_001005 [Vibrio cholerae RC27] gi|4530501|gb|AAD22066.1| Orf2 [Vibrio phage K139] gi|126521588|gb|EAZ78811.1| NAD-dependent DNA ligase [Vibrio cholerae B33] gi|146314210|gb|ABQ18750.1| NAD-dependent DNA ligase [Vibrio cholerae O395] gi|165292214|dbj|BAF98796.1| putative NAD-dependent DNA ligase [Vibrio phage kappa] gi|227014825|gb|ACP11034.1| NAD-dependent DNA ligase [Vibrio cholerae O395] gi|229343894|gb|EEO08869.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Vibrio cholerae RC9] gi|229352034|gb|EEO16975.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Vibrio cholerae B33] gi|229369895|gb|ACQ60318.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Vibrio cholerae MJ-1236] gi|254845018|gb|EET23432.1| NAD-dependent DNA ligase [Vibrio cholerae MO10] gi|262023742|gb|EEY42442.1| hypothetical protein VIJ_001005 [Vibrio cholerae RC27] Length = 301 Score = 52.5 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 14/88 (15%) Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------G 695 + I ++ FTG R + +LGA V + ++++ D++++G G Sbjct: 212 NSISGLQVCFTGKFFAGNRKSIENKAKELGADVRSDVNKQLDLLVIGSMASRDWIHTSHG 271 Query: 696 SKLEKA---QQLG--VKIMNEEQFLFLL 718 K+E ++ G KI+ E+ +L L+ Sbjct: 272 RKIESVINNRKSGSSTKILTEQAWLALI 299 >gi|311747943|ref|ZP_07721728.1| DNA ligase, NAD-dependent [Algoriphagus sp. PR1] gi|126574913|gb|EAZ79271.1| DNA ligase, NAD-dependent [Algoriphagus sp. PR1] Length = 51 Score = 52.5 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 26/47 (55%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58 ++ ++A + ++ L +EI + + YY + +I D E++ + + + Sbjct: 1 MNHQEAAQRIAQLSKEIDHPNQLYYMEDQAVISDFEFNQSRNDLNLL 47 >gi|301155073|emb|CBW14536.1| hypothetical phage protein [Haemophilus parainfluenzae T3T1] Length = 233 Score = 52.5 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 15/93 (16%) Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA-----ILSRKTDIIIVGD 692 + +K SS +E + FTG + +E++ L A V ++ D ++ G Sbjct: 146 QTKKAKSSPLE---ICFTG----FSKAD-KEHLEIL-AKVHDFKVRKTVTHNLDFLVTGY 196 Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 N G SK++ A +G ++NE QF+ +++ T Sbjct: 197 NAGPSKIDAAMNVGAILLNESQFINMIETGEIT 229 >gi|300939286|ref|ZP_07153960.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 21-1] gi|300455793|gb|EFK19286.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 21-1] Length = 329 Score = 52.5 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 54/339 (15%), Positives = 103/339 (30%), Gaps = 57/339 (16%) Query: 287 EMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQI 346 + ++ LP+ DG+V + + + W+++ K+ + I + Sbjct: 33 RNEWWKAKLPFVTDGVVVRAAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAV 90 Query: 347 GRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRA 406 G++G ++ VA L PV + + + DI GD++LV A Sbjct: 91 GKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQILVSLA 139 Query: 407 GEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CS 465 G+ IP++ + R + C C Sbjct: 140 GQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQ 179 Query: 466 AQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE 525 Q + RL S+ ++G+G+ ++ L Q +T Sbjct: 180 EQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT---- 231 Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 G L+ N R R++ ++GI A A S+ Sbjct: 232 --PGIAKSKSAQLWHQFNLARQQPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTE 286 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 W L P G A+ ++E+ +N + Sbjct: 287 QF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 315 >gi|303281526|ref|XP_003060055.1| predicted protein [Micromonas pusilla CCMP1545] gi|226458710|gb|EEH56007.1| predicted protein [Micromonas pusilla CCMP1545] Length = 126 Score = 52.5 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 8/74 (10%) Query: 634 PSIGRHEKNVSSEI--EN--KKLVFTGTLQK---IQRHKAQEYVTQLGAVVSAILSRKTD 686 P+ + + E K+ TG L + ++R + + V G V SA LS KTD Sbjct: 11 PAAETPAEEGGGVLFREGRALKVAVTGILAEPRPMKRDQFKAAVEAAGGVYSAALSGKTD 70 Query: 687 IIIVGD-NPGSKLE 699 +++ G+ G K E Sbjct: 71 VLVCGEPKTGKKEE 84 >gi|328850331|gb|EGF99497.1| hypothetical protein MELLADRAFT_79481 [Melampsora larici-populina 98AG31] Length = 234 Score = 52.5 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 27/104 (25%) Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS---- 682 +K G E + +FTG L+ + R +AQ G S Sbjct: 18 IKSAFIFTGSKEIPEGQPNCLAGLTFLFTGELESLSREEAQTLCKLYGG------SWFRC 71 Query: 683 --RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 +K + +I + + + E++ L L+ ++ + Sbjct: 72 SAKKLE-VIA------------KHKITTLTEDKILELIGTHSAS 102 >gi|295839646|ref|ZP_06826579.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74] gi|295827583|gb|EDY45420.2| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74] Length = 331 Score = 52.5 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 3/76 (3%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPG-SKLEKAQQL 704 ++ ++ F+G +R ++ T+ G V+ +SR T +++ D + G SK +A+Q Sbjct: 248 VQGMRVAFSGDTST-ERELLEDRATEAGLHVAGSISRLTSLLVTNDPDSGTSKTVRARQY 306 Query: 705 GVKIMNEEQFLFLLQQ 720 G +++E F LL+ Sbjct: 307 GTPVVDEAAFGQLLRD 322 >gi|123969095|ref|YP_001009953.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str. AS9601] gi|123199205|gb|ABM70846.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str. AS9601] Length = 249 Score = 52.1 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 56/289 (19%), Positives = 92/289 (31%), Gaps = 63/289 (21%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L +++ Y D+ Y + + II D + + F + +P+ K ++ Sbjct: 5 LVRDVKYLDEQY-RIGEGIISDDAF-------KQLEKLF--IPVDPEPDYFNQK-NNKLL 53 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 L K + SL +++PKIDG I IRY Sbjct: 54 PKLAKENYKKFLESL------------------------LTKTRLSIQPKIDGCAIAIRY 89 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 GKF A G DVS+ I+ I +P + K DF + Sbjct: 90 IDGKFNKAIT----KKGFDVSSKIKQIKNVP---------------DCIPIKRDFQIRGE 130 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263 + A + + R + I L F + QYE L ++ Sbjct: 131 -LYATNQVAGISQR---ITRKYLNDKKGIGESLRFCCFEILNGR----LNQYETLNYLKK 182 Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 GF + N I Y + Y +G+V K++ L+ Sbjct: 183 CGFSTPDSYFT-NHTSEIQIYKKNWLEKKIFEKYPTNGIVIKINSRKLK 230 >gi|308177615|ref|YP_003917021.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis Re117] gi|307745078|emb|CBT76050.1| putative DNA polymerase III subunit epsilon [Arthrobacter arilaitensis Re117] Length = 412 Score = 52.1 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 5/64 (7%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS---KLEKAQQLGVKI 708 +V TG + + R + + + G +++K +++ +P S K +KA+ G+ + Sbjct: 343 VVLTGDMTR-PRSEIEAQLASAGFTPHRAITKKVALLVA-ADPDSLSGKAKKARDYGIPV 400 Query: 709 MNEE 712 + EE Sbjct: 401 VGEE 404 >gi|290961466|ref|YP_003492648.1| exonuclease [Streptomyces scabiei 87.22] gi|260650992|emb|CBG74110.1| putative exonuclease [Streptomyces scabiei 87.22] Length = 331 Score = 52.1 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 8/82 (9%) Query: 644 SSEIE-NKKLVFTG--TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKL 698 ++ ++ F+G +++ R ++ + G V+ LSR T +++ D + SK+ Sbjct: 247 GKPLKQGMRVAFSGDTSVE---RDLLEDRAIEAGLHVATSLSRVTSLLVTNDPDSHTSKV 303 Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720 KA+Q G +++E F LL+ Sbjct: 304 VKARQYGTPVVDEAAFGQLLRD 325 >gi|326479986|gb|EGE03996.1| WGR domain-containing protein [Trichophyton equinum CBS 127.97] Length = 734 Score = 52.1 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 5/76 (6%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---PGSKLEK 700 S+ + + +V +G+ + + V QLG SA ++ +I G+K ++ Sbjct: 2 SNPLAGQVVVVSGSFRSYNHETIKSIVEQLGGTFSATVTDACTHLITSKAAHPAGTKNQQ 61 Query: 701 AQQLG--VKIMNEEQF 714 A LG ++I++ + Sbjct: 62 AIALGNDIQIVSLDWL 77 >gi|325957458|ref|YP_004292870.1| DNA polymerase iii polc-type [Lactobacillus acidophilus 30SC] gi|325334023|gb|ADZ07931.1| DNA polymerase iii polc-type [Lactobacillus acidophilus 30SC] Length = 272 Score = 52.1 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 5/77 (6%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 S + + ++ +K + TG L R + + + +G KTD I G Sbjct: 180 DVSGDPAKNDKNNAFYDKYVSATGKLNAYTRKEIAQMINNIGGHFQKNPGEKTDYFIAGK 239 Query: 693 -----NPGSKLEKAQQL 704 +KLEKA++L Sbjct: 240 FEGNRGTSNKLEKAKKL 256 >gi|301384682|ref|ZP_07233100.1| hypothetical protein PsyrptM_18697 [Pseudomonas syringae pv. tomato Max13] Length = 147 Score = 52.1 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 +VFTG R + +E TQ G V + + G+N G +K+EKA G I++ Sbjct: 75 IVFTG-FNAAIRVELEEKATQFGLKVMKTPGKNLTFLCYGENAGPTKVEKALDAGSFIID 133 Query: 711 EEQFLFLL 718 ++FL L+ Sbjct: 134 ADEFLSLI 141 >gi|213968049|ref|ZP_03396194.1| hypothetical protein PSPTOT1_4935 [Pseudomonas syringae pv. tomato T1] gi|213927029|gb|EEB60579.1| hypothetical protein PSPTOT1_4935 [Pseudomonas syringae pv. tomato T1] Length = 119 Score = 52.1 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 +VFTG R + +E TQ G V + + G+N G +K+EKA G I++ Sbjct: 47 IVFTG-FNAAIRVELEEKATQFGLKVMKTPGKNLTFLCYGENAGPTKVEKALDAGSFIID 105 Query: 711 EEQFLFLL 718 ++FL L+ Sbjct: 106 ADEFLSLI 113 >gi|326468534|gb|EGD92543.1| polymerase [Trichophyton tonsurans CBS 112818] Length = 723 Score = 51.7 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 5/72 (6%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---PGSKLEK 700 S+ + + +V +G+ + + V QLG SA ++ +I G+K ++ Sbjct: 2 SNPLAGQVVVVSGSFRSYNHETIKSIVEQLGGTFSATVTDACTHLITSKAAHPAGTKNQQ 61 Query: 701 AQQLG--VKIMN 710 A LG ++I++ Sbjct: 62 AIALGNDIQIVS 73 >gi|32307200|gb|AAP79093.1| NAD-dependent DNA ligase [Bacillus catenulatus] Length = 121 Score = 51.7 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 214 ANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 ANPRNAA G R+L P +R L+ FV+GL E+ E L ++ LGF VN Sbjct: 1 ANPRNAAVGSFRQLEPKVAASRKLDLFVYGLANAEELGIASHSEALDYLQELGFKVNPER 60 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 R+ ++++ +E R LPY+IDG+V KVD F+ +++LG A+SPRW I++KF Sbjct: 61 RRCANIDEVIAFISEWHEKRPQLPYEIDGIVIKVDSFAQRRELGATAKSPRWAIAYKFPA 120 Query: 333 K 333 + Sbjct: 121 E 121 >gi|310800017|gb|EFQ34910.1| hypothetical protein GLRG_10054 [Glomerella graminicola M1.001] Length = 752 Score = 51.7 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 35/70 (50%), Gaps = 5/70 (7%) Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---NP-GSKLEK 700 + + +GT K +R + + +++ LGA ++ +++KT +I +K+ Sbjct: 24 QPLNGAVIAISGTFDK-KRTELESWLSSLGAGIAKSITKKTTHLISTPEDFKALTTKVAS 82 Query: 701 AQQLGVKIMN 710 AQ+ + I++ Sbjct: 83 AQKNDIPIVS 92 >gi|227543169|ref|ZP_03973218.1| DNA polymerase III epsilon subunit [Corynebacterium glucuronolyticum ATCC 51866] gi|227180978|gb|EEI61950.1| DNA polymerase III epsilon subunit [Corynebacterium glucuronolyticum ATCC 51866] Length = 449 Score = 51.7 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 8/92 (8%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD- 692 E N + + + TG + + + + GA + +++KT I VG Sbjct: 343 IPEPNTEANPDGLLYGQNVTLTGDFEPLDKGTLWSKIADQGATIGKNVTKKTTICAVGAW 402 Query: 693 -NPGSKLEKAQQLG-----VKIMN-EEQFLFL 717 SK ++A++L + I + E+ F+ L Sbjct: 403 TKKTSKQKRAEELKEQGQDIAIWSKEKLFIVL 434 >gi|227488565|ref|ZP_03918881.1| DNA polymerase III epsilon subunit [Corynebacterium glucuronolyticum ATCC 51867] gi|227091459|gb|EEI26771.1| DNA polymerase III epsilon subunit [Corynebacterium glucuronolyticum ATCC 51867] Length = 449 Score = 51.7 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 8/92 (8%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD- 692 E N + + + TG + + + + GA + +++KT I VG Sbjct: 343 IPEPNTEANPDGLLYGQNVTLTGDFEPLDKGTLWSKIADQGATIGKNVTKKTTICAVGAW 402 Query: 693 -NPGSKLEKAQQLG-----VKIMN-EEQFLFL 717 SK ++A++L + I + E+ F+ L Sbjct: 403 TKKTSKQKRAEELKEQGQDIAIWSKEKLFIVL 434 >gi|32396673|gb|AAP49294.1| NAD-dependent DNA ligase [Geobacillus thermodenitrificans] Length = 121 Score = 51.7 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 51/121 (42%), Positives = 74/121 (61%), Gaps = 1/121 (0%) Query: 214 ANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 ANPRNAA+G LR+L +R L+ FV+GL E+ + E L ++ LGF VN Sbjct: 1 ANPRNAAAGSLRQLESKVAASRQLDLFVYGLANAEELGIESHSEALDYLQALGFKVNPER 60 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 R+ ++++ NE R LPY+IDG+V KVD F+ Q++LG A+SPRW I++KF Sbjct: 61 RRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFAQQRELGATAKSPRWAIAYKFPA 120 Query: 333 K 333 + Sbjct: 121 E 121 >gi|298381865|ref|ZP_06991462.1| predicted protein [Escherichia coli FVEC1302] gi|298277005|gb|EFI18521.1| predicted protein [Escherichia coli FVEC1302] Length = 178 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 62/168 (36%), Gaps = 20/168 (11%) Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 F +I LG+ L + ++ P D+F+ + K+ + Sbjct: 28 YSACWRFFEPRGVHIHQLGQTMLKQLVEKC----YVQKPLDMFS------MTAGKLTGLD 77 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 G + + I + +++ L +F+ GI V E A LAK + + + Sbjct: 78 QSGPKLASIICRGIEQAKDVQLGELLFACGIYGVEEEEAWLLAKRFSNLEALYGA----- 132 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636 SL+ L+ + +A F+++P N+ A+ L E + Sbjct: 133 -----SIDSLMSYNLLNEAVAVNTYNFFRHPLNVSALNELQTEGGLKV 175 >gi|293406131|ref|ZP_06650057.1| predicted protein [Escherichia coli FVEC1412] gi|291426137|gb|EFE99169.1| predicted protein [Escherichia coli FVEC1412] Length = 171 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 62/168 (36%), Gaps = 20/168 (11%) Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 F +I LG+ L + ++ P D+F+ + K+ + Sbjct: 21 YSACWRFFEPRGVHIHQLGQTMLKQLVEKC----YVQKPLDMFS------MTAGKLTGLD 70 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 G + + I + +++ L +F+ GI V E A LAK + + + Sbjct: 71 QSGPKLASIICRGIEQAKDVQLGELLFACGIYGVEEEEAWLLAKRFSNLEALYGA----- 125 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636 SL+ L+ + +A F+++P N+ A+ L E + Sbjct: 126 -----SIDSLMSYNLLNEAVAVNTYNFFRHPLNVSALNELQTEGGLKV 168 >gi|268320049|ref|YP_003293705.1| hypothetical protein FI9785_1583 [Lactobacillus johnsonii FI9785] gi|262398424|emb|CAX67438.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus johnsonii FI9785] Length = 320 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 27/124 (21%) Query: 616 YQNPRN---ICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTL--QKIQRHKAQEY 669 ++ V+ L L P I + + S +K +V TG L + Sbjct: 199 FRQEHMLRAQEMVKTLDLTSEWPEIVKQSQAFRSPFAHKNVVITGDLDVDDY---ELANA 255 Query: 670 VTQLGAVVSAILSRKTDIIIVGD---------NPGSKLEKAQQL-----GVKIMNEEQFL 715 V LG + + + TD ++VGD L KA+ L ++I +E+ FL Sbjct: 256 VKNLGGFIRDEVGQDTDYLLVGDHDFLRTDIVE----LNKARALKKQGQNIRIWSEQFFL 311 Query: 716 FLLQ 719 +L Sbjct: 312 NVLD 315 >gi|218706125|ref|YP_002413644.1| hypothetical protein ECUMN_2949 [Escherichia coli UMN026] gi|218433222|emb|CAR14120.1| hypothetical protein from bacteriophage origin; putative DNA ligase fragment [Escherichia coli UMN026] Length = 208 Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 62/168 (36%), Gaps = 20/168 (11%) Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 F +I LG+ L + ++ P D+F+ + K+ + Sbjct: 58 YSACWRFFEPRGVHIHQLGQTMLKQLVEKC----YVQKPLDMFS------MTAGKLTGLD 107 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 G + + I + +++ L +F+ GI V E A LAK + + + Sbjct: 108 QSGPKLASIICRGIEQAKDVQLGELLFACGIYGVEEEEAWLLAKRFSNLEALYGA----- 162 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636 SL+ L+ + +A F+++P N+ A+ L E + Sbjct: 163 -----SIDSLMSYNLLNEAVAVNTYNFFRHPLNVSALNELQTEGGLKV 205 >gi|32482046|gb|AAP49290.1| NAD-dependent DNA ligase [Bacillus sp. IMG-1] Length = 121 Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 49/121 (40%), Positives = 70/121 (57%), Gaps = 1/121 (0%) Query: 214 ANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 ANPRNAA G R+L P +R L+ FV+GL + E L ++ LGF VN Sbjct: 1 ANPRNAAGGSFRQLEPKVAASRQLDLFVYGLADAEALGIASHSEALDYLQALGFKVNPER 60 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 R+ ++++ +E R LPY+IDG+V KVD F+ Q+ LG A+SPRW I++KF Sbjct: 61 RRCANIDEVIAFISEWHDKRPQLPYEIDGIVIKVDSFAQQRALGATAKSPRWAIAYKFPA 120 Query: 333 K 333 + Sbjct: 121 E 121 >gi|255079352|ref|XP_002503256.1| predicted protein [Micromonas sp. RCC299] gi|226518522|gb|ACO64514.1| predicted protein [Micromonas sp. RCC299] Length = 306 Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 6/87 (6%) Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-DN 693 + +S I+NK +V GTL + R A+ +T G ++ KT++I++G Sbjct: 178 FDSPQKTAGASRIKNKCVVLVGTLHGMSRADAKTAITAAGGHWRDTITCKTELIVLGLSK 237 Query: 694 PGSKLEKAQQ----LGVKIMNEEQFLF 716 P + LEKA++ + + + L Sbjct: 238 PSA-LEKAEETAEQKQIDTITGNELLE 263 >gi|154291124|ref|XP_001546148.1| predicted protein [Botryotinia fuckeliana B05.10] gi|150847097|gb|EDN22290.1| predicted protein [Botryotinia fuckeliana B05.10] Length = 681 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 4/89 (4%) Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700 N + + + V +GTL + R ++ GA S +++ T +++GDNP +K K Sbjct: 557 DNTGTFLAGRTFVVSGTLPTVGRINTEKLSRLYGAKTSRAITKATTDVVLGDNPLAKQVK 616 Query: 701 A-QQLGVKIMNEEQFLFL---LQQYNTTL 725 + L M+ + F+ + L +YN L Sbjct: 617 ELKDLSPNTMDVDAFIAMLTSLSKYNNNL 645 >gi|330956774|gb|EGH57034.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae Cit 7] Length = 35 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 18/33 (54%) Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 GSKL KA +LG+ +++E+ L L + Sbjct: 1 PGAGSKLTKANELGLTVLDEDALLKRLAELGVA 33 >gi|6746428|gb|AAF27555.1| unknown [Lactococcus lactis] Length = 83 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 16/76 (21%) Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----D-----NPGSKLEKAQQLGVK---- 707 + R +AQ ++ L + +++KT ++ G D +P KL +A+Q ++ Sbjct: 1 MTRKQAQAIISGLEGHNQSSVTKKTTRLVTGYFPIDLIKGYSPSQKLTEAEQ-AIESGQP 59 Query: 708 --IMNEEQFLFLLQQY 721 IM+E++F+ L Q+ Sbjct: 60 LIIMSEKEFVDFLAQF 75 >gi|330830139|ref|YP_004393091.1| hypothetical protein B565_2439 [Aeromonas veronii B565] gi|328805275|gb|AEB50474.1| hypothetical protein B565_2439 [Aeromonas veronii B565] Length = 156 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 46/98 (46%), Gaps = 7/98 (7%) Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 ++ LLK + + + +E + FTG K ++ + + + +V ++ Sbjct: 58 NEIQHLLKSGHIEVQKPKVKA--LLE---VCFTG-FSKKEKDELVQLAESMQCLVRKSVT 111 Query: 683 RKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 D++ GDN G SK+ A+ V ++N+ +F+ +L Sbjct: 112 TDLDVLCYGDNAGPSKMRDARNKSVLVINKVEFISMLN 149 >gi|255565595|ref|XP_002523787.1| poly [ADP-ribose] polymerase, putative [Ricinus communis] gi|223536875|gb|EEF38513.1| poly [ADP-ribose] polymerase, putative [Ricinus communis] Length = 815 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 40/108 (37%), Gaps = 14/108 (12%) Query: 625 VEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSA 679 + LLK+ R + + + + +G ++ R ++ + + G VS Sbjct: 164 IADLLKKHQDPKNRPRQELGAPGKPFAGMIISLSG---RLSRTHQYWKKTIEKYGGKVSN 220 Query: 680 ILSRKTDIIIVGD-----NPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + ++V SKL +A + + + EE L +++ Sbjct: 221 SVIG-VTCLVVSPAERERGGSSKLSEAMERNIPVAREEWLLDSIEKQE 267 >gi|326489849|dbj|BAJ93998.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 549 Score = 50.9 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 1/62 (1%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 + TG L K R + +E +LG S L K ++V G K E A + Sbjct: 53 DGPFAGLVVCVTG-LSKEARSQVKEAAERLGGDYSGSLHPKCTHLVVQSFAGRKFEHALK 111 Query: 704 LG 705 G Sbjct: 112 HG 113 >gi|327300553|ref|XP_003234969.1| polymerase [Trichophyton rubrum CBS 118892] gi|326462321|gb|EGD87774.1| polymerase [Trichophyton rubrum CBS 118892] Length = 726 Score = 50.6 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 5/76 (6%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---PGSKLEK 700 S + + +V +G+ + + V QLG SA ++ ++ G+K ++ Sbjct: 2 SKPLAGQVVVVSGSFRAYNHDTIKYIVEQLGGTFSATVTDACTHLVTSKAAHPAGTKNQQ 61 Query: 701 AQQLG--VKIMNEEQF 714 A LG +KI++ + Sbjct: 62 AIALGNDIKIVSLDWL 77 >gi|167767031|ref|ZP_02439084.1| hypothetical protein CLOSS21_01549 [Clostridium sp. SS2/1] gi|167711006|gb|EDS21585.1| hypothetical protein CLOSS21_01549 [Clostridium sp. SS2/1] gi|291559629|emb|CBL38429.1| NAD-dependent DNA ligase (contains BRCT domain type II) [butyrate-producing bacterium SSC/2] Length = 509 Score = 50.6 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 26/54 (48%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 S + + L+++I + YY+Y+K + D YD + + + +P++ Sbjct: 415 SKLSIKDRIELLQRKIILNSIAYYKYNKSPMSDKAYDEMCKELVDMQKKYPNIK 468 >gi|315121970|ref|YP_004062459.1| DNA ligase, NAD-dependent [Candidatus Liberibacter solanacearum CLso-ZC1] gi|315122938|ref|YP_004063427.1| DNA ligase, NAD-dependent [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495372|gb|ADR51971.1| DNA ligase, NAD-dependent [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496340|gb|ADR52939.1| DNA ligase, NAD-dependent [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 127 Score = 50.6 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSK--PIILDSEYDALKRRCDAIAHA 61 P+ LS +A E L + + +H YY+ S P++ D++YD ++ R +A Sbjct: 52 NDFKPVSQLSFWEALIETEYLTKIVLHHRRWYYRLSDETPLL-DADYDKIEIRIIKLAEH 110 Query: 62 FPDLARSEDP 71 FP+L P Sbjct: 111 FPELYSLAHP 120 >gi|126696886|ref|YP_001091772.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str. MIT 9301] gi|126543929|gb|ABO18171.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str. MIT 9301] Length = 249 Score = 50.6 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 58/289 (20%), Positives = 94/289 (32%), Gaps = 63/289 (21%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L +++ Y D+ Y + + II D + + F + ++PN K ++ Sbjct: 5 LVRDVKYLDEQY-RIGEGIISDDAF-------KQLEKLF--IPVDQEPNYFNQK-NNKLL 53 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 L K + SL +++PKIDG I IRY Sbjct: 54 PKLAKENYKEFLESL------------------------LTKTRLSIQPKIDGCAIAIRY 89 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 GKF A G DVS+ I+ I +P + + K DF + Sbjct: 90 LDGKFNKAIT----KKGFDVSSKIKQIKNVPDYIPI---------------KRDFQIRGE 130 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263 + A + + R + I L F + QYE L ++ Sbjct: 131 -LYATNQVAGISQR---ITRKYLNDKKGIGESLRFCCFQILNGR----LNQYETLNYLKK 182 Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 GF + N I Y + Y +G+V K++ LQ Sbjct: 183 CGFSTPDSYFT-NHTSEIQIYKKNWLERKIFAKYPTNGIVVKINSRKLQ 230 >gi|307326641|ref|ZP_07605834.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu 4113] gi|306887625|gb|EFN18618.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu 4113] Length = 638 Score = 50.6 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 3/74 (4%) Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG--SKLEKAQQLGV 706 K+ TG R + G + +SR T +++ + +K +A GV Sbjct: 228 GMKVAITGE-TAHARAELVGRAVAAGLNMMTSVSRHTSVLVTNEPASDSAKARRALAEGV 286 Query: 707 KIMNEEQFLFLLQQ 720 +++E FL LL Sbjct: 287 PVIDEHTFLRLLAD 300 >gi|294628658|ref|ZP_06707218.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14] gi|292831991|gb|EFF90340.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14] Length = 328 Score = 50.6 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 3/74 (4%) Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPGS-KLEKAQQLGV 706 ++ F+G +R ++ T+ G V+ LSR T +++ D + G+ K KA+Q G Sbjct: 249 GMRVAFSGDTST-ERELLEDRATEAGLHVATSLSRLTSLLVTNDPDSGTTKTAKARQYGT 307 Query: 707 KIMNEEQFLFLLQQ 720 +++E F LL Sbjct: 308 PVVDEAAFGQLLAD 321 >gi|111018828|ref|YP_701800.1| DNA polymerase III [Rhodococcus jostii RHA1] gi|110818358|gb|ABG93642.1| probable DNA polymerase III [Rhodococcus jostii RHA1] Length = 649 Score = 50.2 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 3/76 (3%) Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQ 702 ++ KLV +G+ + R +T G V +SR+T +++ D + +K+ +A Sbjct: 274 GLVQGMKLVISGS-TDVPRLSLAARLTAAGLDVMNSVSRQTGVVVCNDPHSSSAKVRRAV 332 Query: 703 QLGVKIMNEEQFLFLL 718 G+ ++ E Q +L Sbjct: 333 ADGIPVLTERQLGEML 348 >gi|271965325|ref|YP_003339521.1| DNA polymerase III subunit epsilon-like protein [Streptosporangium roseum DSM 43021] gi|270508500|gb|ACZ86778.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease-like protein [Streptosporangium roseum DSM 43021] Length = 407 Score = 50.2 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS---KLEKAQQLGVKI 708 +VFTG + R + Q G + ++RK +++ +P S K KA+ G+ I Sbjct: 339 VVFTGEMDG-PRDDWEWRALQAGYIPHGYITRKVRLLVA-ADPDSLSAKARKARDYGIPI 396 Query: 709 MNEEQFLFLL 718 + + F +L Sbjct: 397 VTPDAFARML 406 >gi|46123093|ref|XP_386100.1| hypothetical protein FG05924.1 [Gibberella zeae PH-1] Length = 752 Score = 50.2 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 6/86 (6%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQ--KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-- 692 + V ++ + +G + + + G + +++ T ++ D Sbjct: 7 AAAKAPVDPPLDGCAIAVSGKFDDIGHSHASLETLIRRHGGTFTRSVTKATTHVVSTDDD 66 Query: 693 -NPGS-KLEKAQQLGVKIMNEEQFLF 716 N GS K+ AQ G+ IMN L Sbjct: 67 FNSGSNKVTTAQAKGLPIMNPSWLLD 92 >gi|213421635|ref|ZP_03354701.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 325 Score = 50.2 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 54/335 (16%), Positives = 107/335 (31%), Gaps = 56/335 (16%) Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 P+ DG+V ++ + + W+ + K+ ++ I +G++G +T V Sbjct: 38 PFVTDGVVIRMAKEPASQYWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVV 95 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 A L PV + + + DI GD++LV AG+ IP++ + Sbjct: 96 ASLVPVILDDKRVQRVNI-----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDE 144 Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475 ++ R P + C Q + RL Sbjct: 145 VVWRSRERSKPV-------------------PPGSHFNSLTCFYASATCQEQFISRLVWL 185 Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 SR A ++G+G+ ++ + ++ +I N G Sbjct: 186 GSRSALGLDGMGEASWRALHQT----------HRFEHIFSWLALTSAQIANTPGVAKGKS 235 Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ N R S R+I ++ + A A S++ Sbjct: 236 EQIWRQFNLARRQSFTRWIMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT- 291 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 G+ A ++++ NP+ I A+ L Sbjct: 292 ---------GERRAGRVIDWRNNPQ-INALSRWLA 316 >gi|189490483|ref|YP_001957053.1| putative DNA ligase [Pseudomonas phage 201phi2-1] gi|164609548|gb|ABY63157.1| putative DNA ligase [Pseudomonas phage 201phi2-1] Length = 308 Score = 49.8 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 69/227 (30%), Gaps = 18/227 (7%) Query: 107 LRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSAC 166 +R ++ ++ ++I + P +G + + Y+ G A +G G G D + Sbjct: 96 VRNWLAKV----DCDYTDNIDIIMTPYYNGCRVELVYQGGSLHKAITKGGGIMGTDFTMN 151 Query: 167 IRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR 226 + IP + E I +RG + + N ++ R ++ ++ Sbjct: 152 AYLVEGIP--QQILDNERISIRGVITSTLNHVWGEDE------------KRVISASLMST 197 Query: 227 LNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYN 286 YL F + + + + G + Sbjct: 198 EPTNINLNYLVFVPDDWHVPGAMLNTKDLRSISLAWDMEPAGMDSFPGQYKEIGYLEEKI 257 Query: 287 EMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333 E G+++ VD + +LG + P W I + Sbjct: 258 ETFRKEIKSKIPYSGILFTVDSLGRKMELGYTSIHPEWAILLEEKSN 304 >gi|254574486|ref|XP_002494352.1| DNA Polymerase II Epsilon complex with BRCT domain [Pichia pastoris GS115] gi|238034151|emb|CAY72173.1| DNA Polymerase II Epsilon complex with BRCT domain [Pichia pastoris GS115] gi|328353831|emb|CCA40228.1| DNA polymerase II complex component [Pichia pastoris CBS 7435] Length = 620 Score = 49.8 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 11/101 (10%) Query: 615 FYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 F + E L KE+S S E ++ T T + QR + Q+ + Sbjct: 67 FLRPKSIKEIYEEWLQGTRKELSFSGSELPV-----FEGLRVCLTRTKEPSQREEFQKLI 121 Query: 671 TQLGAVVSAILS-RKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 G VS L+ K I+ + G + EKA + + ++ Sbjct: 122 EDRGGKVSEALTMGK-SCIVTSEKSGKRYEKALEWKIPTLD 161 >gi|239928032|ref|ZP_04684985.1| DNA polymerase III [Streptomyces ghanaensis ATCC 14672] gi|291436367|ref|ZP_06575757.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291339262|gb|EFE66218.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 631 Score = 49.8 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 4/80 (5%) Query: 644 SSEIE-NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEK 700 ++ K+ TG R + G + +SR T +++ + +K + Sbjct: 222 GGPLQQGMKVAITGE-TAHARAELVGRAVAAGLNMMTSVSRHTSVLVTNEPAADSAKARR 280 Query: 701 AQQLGVKIMNEEQFLFLLQQ 720 A GV +++E FL LL Sbjct: 281 ALAEGVPVVDERTFLRLLAD 300 >gi|269796817|ref|YP_003316272.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease [Sanguibacter keddieii DSM 10542] gi|269099002|gb|ACZ23438.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Sanguibacter keddieii DSM 10542] Length = 611 Score = 49.8 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (3%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQL 704 ++ K+VFTG ++ R G V S +T +++ KL A+ Sbjct: 234 VQGMKIVFTGPTER-PRDDLVRLAVGAGLDVMNSASSRTSVVVCATPAATTRKLAAARAH 292 Query: 705 GVKIMNEEQFLFLLQQ 720 G++I++E FL L+ + Sbjct: 293 GIEIVDERVFLDLVGR 308 >gi|262204572|ref|YP_003275780.1| exonuclease RNase T and DNA polymerase III [Gordonia bronchialis DSM 43247] gi|262087919|gb|ACY23887.1| Exonuclease RNase T and DNA polymerase III [Gordonia bronchialis DSM 43247] Length = 590 Score = 49.8 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 7/77 (9%) Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS----KLEK 700 I+ K+ TG + R + ++ G V +S KT I+I NPGS KL++ Sbjct: 213 GLIQGTKVAITGP-TTVPRTELARRLSDAGLDVMNSVSGKTGIVIA--NPGSPDSRKLQR 269 Query: 701 AQQLGVKIMNEEQFLFL 717 A+ G +++E L L Sbjct: 270 ARLDGTPVLDEGTMLRL 286 >gi|224105065|ref|XP_002313672.1| predicted protein [Populus trichocarpa] gi|222850080|gb|EEE87627.1| predicted protein [Populus trichocarpa] Length = 809 Score = 49.8 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 35/84 (41%), Gaps = 11/84 (13%) Query: 646 EIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAILSRKTDIIIVG----DNPGS-KL 698 + + +G ++ R + + + G VS+ + ++V + GS KL Sbjct: 182 PLAGIVVSLSG---RLSRTHQYWKREIEKHGGKVSSSF-KGITCLVVSPAERERGGSTKL 237 Query: 699 EKAQQLGVKIMNEEQFLFLLQQYN 722 A + G+ ++ E+ L +++ Sbjct: 238 ADALEAGIPVVREDWLLDSIEKQE 261 >gi|257485000|ref|ZP_05639041.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 33 Score = 49.8 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 7/32 (21%), Positives = 14/32 (43%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILD 45 ++ + L E+ H+ Y+ +P I D Sbjct: 1 MKAVETRILELRAELDEHNYRYHVLDEPSIPD 32 >gi|213620560|ref|ZP_03373343.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 99 Score = 49.8 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +A +E++ L+Q+++ +D Y++ + DS YD L R S P Sbjct: 27 PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85 Query: 74 P 74 P Sbjct: 86 P 86 >gi|296100338|ref|YP_003620507.1| hypothetical protein LKI_10796 [Leuconostoc kimchii IMSNU 11154] gi|295831655|gb|ADG39538.1| hypothetical protein LKI_10796 [Leuconostoc kimchii IMSNU 11154] Length = 93 Score = 49.4 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 8/73 (10%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DN------PGSKLEKAQQ 703 ++FTG L + R +AQ+ LGA +++K +I G + K++ A+ Sbjct: 9 IIFTGKLNSLTRLQAQQLAAMLGAFPQTNMNQKIKYVIAGQIEQSMFEILTTKKIKYAET 68 Query: 704 LGVKIMNEEQFLF 716 V+I+NE +FL Sbjct: 69 HSVEILNESEFLK 81 >gi|291222915|ref|XP_002731461.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii] Length = 1075 Score = 49.4 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 8/88 (9%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII-----VGDNPGSKLEKA 701 +++ K+V G L + + + QLG V +++ +I V N K+++A Sbjct: 261 LQDCKIVLVGKLSE-SNKDITKKIKQLGGEVVTKINKNVACVISTQDEVN-NMSKKIKEA 318 Query: 702 QQLGVKIMNEEQFLFLLQQYNTTLRIHD 729 + GV +++E+ FL +++ L I Sbjct: 319 KAAGVHVVSED-FLNTVKKGGAALMIQQ 345 >gi|115395844|ref|XP_001213561.1| poly polymerase (Poly[ADP-ribose] synthetase) [Aspergillus terreus NIH2624] gi|114193130|gb|EAU34830.1| poly polymerase (Poly[ADP-ribose] synthetase) [Aspergillus terreus NIH2624] Length = 653 Score = 49.4 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 6/60 (10%) Query: 650 KKLVF--TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----DNPGSKLEKAQQ 703 + V +GT ++ + + + GA S ++ +I DN SK ++A + Sbjct: 7 QSFVIALSGTFSGYKQAEVRALIESHGAKFSHSVTSDLTHLITTQREIDNKNSKYKQATK 66 >gi|317035115|ref|XP_001401109.2| subunit of DNA polymerase II [Aspergillus niger CBS 513.88] Length = 785 Score = 49.4 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 646 EIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 + TG + + R++ Q+ VT GA L++ +I + G K + A Q Sbjct: 107 TFAGLSICITG-FEDMSLRNRIQDTVTAHGAEFRKDLTKNVTHLIARNTEGEKYKFATQW 165 Query: 705 GVKIMNEEQFLFLLQQ 720 G++I+ + F L++ Sbjct: 166 GIRIVTVKWFEDSLER 181 >gi|134081791|emb|CAK42047.1| unnamed protein product [Aspergillus niger] Length = 795 Score = 49.4 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 646 EIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 + TG + + R++ Q+ VT GA L++ +I + G K + A Q Sbjct: 117 TFAGLSICITG-FEDMSLRNRIQDTVTAHGAEFRKDLTKNVTHLIARNTEGEKYKFATQW 175 Query: 705 GVKIMNEEQFLFLLQQ 720 G++I+ + F L++ Sbjct: 176 GIRIVTVKWFEDSLER 191 >gi|319935781|ref|ZP_08010210.1| hypothetical protein HMPREF9488_01041 [Coprobacillus sp. 29_1] gi|319809216|gb|EFW05665.1| hypothetical protein HMPREF9488_01041 [Coprobacillus sp. 29_1] Length = 301 Score = 49.4 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 35/238 (14%), Positives = 84/238 (35%), Gaps = 36/238 (15%) Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 + + Q + +L +S +LY S + + ++ + Sbjct: 76 IHHYFENTIVVSHDIQGDMMNLRAVLKQNHISYPHLYMSCTNVLAHLVYPDLHKYNVKEL 135 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP-----LVGDIIAQAIVEFYQ 617 I ++ A I + +L + G+ + Sbjct: 136 SQMIGFEFQAHHALDDAKACAQILIEMLKYEHCETLQELHQRFHLDFGE---------MK 186 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + E++P + + + + ++ + FTG L + R +E Q+ A+ Sbjct: 187 ENYYRNIIS---AEIAPQLRELSQREDAFLYHQFVCFTGKLS-MPRELLEEKTKQVSALA 242 Query: 678 SAILSRKTDIIIVG-----------DNPGSKLEKAQQL-----GVKIMNEEQFLFLLQ 719 + +S +T+ +++G +N K++KA QL ++I++E ++L LL+ Sbjct: 243 TQQVSTQTNYLVIGGKGYHKVRFGNEN--KKVKKAIQLMKQGQDLRIVHENEYLKLLE 298 >gi|195998397|ref|XP_002109067.1| hypothetical protein TRIADDRAFT_19562 [Trichoplax adhaerens] gi|190589843|gb|EDV29865.1| hypothetical protein TRIADDRAFT_19562 [Trichoplax adhaerens] Length = 968 Score = 49.4 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 61/139 (43%), Gaps = 26/139 (18%) Query: 607 IIAQAIV---EFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQ 659 I++++ +F ++ + L ++ + S++ ++ +V G L Sbjct: 330 KISKSLRNDSDFLKDFKFKAGERIFPKLTQKAPTTPTTAITTPSAKCLKGVAIVIIGKLS 389 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIV----GD--NPGSKLEKAQQLGVKIMNEEQ 713 K + ++ + LG V LS DI++ G+ G K+++A++L + I++E+ Sbjct: 390 K-TQAALKKDIESLGGTVEKDLSS--DIVLCISSNGEVKKNGKKIKEARELKLPIVDED- 445 Query: 714 FL---------FLLQQYNT 723 FL L+ ++N Sbjct: 446 FLTAVTDGDPKALVSKHNI 464 >gi|227548773|ref|ZP_03978822.1| AAA ATPase [Corynebacterium lipophiloflavum DSM 44291] gi|227079185|gb|EEI17148.1| AAA ATPase [Corynebacterium lipophiloflavum DSM 44291] Length = 946 Score = 49.4 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 3/40 (7%) Query: 680 ILSR-KTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLF 716 +S+ +TD+++ GD + K + A++ G I+ +E+F Sbjct: 725 SVSKTRTDVLVAGDPASMSRKAQNAREFGTPIITQEEFER 764 >gi|306822551|ref|ZP_07455929.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] gi|309801474|ref|ZP_07695601.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium JCVIHMP022] gi|304554096|gb|EFM42005.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] gi|308221989|gb|EFO78274.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium JCVIHMP022] Length = 328 Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGV 706 K+V TG++++ +R + + +G V ++++ +++ D + +K KA+ G+ Sbjct: 252 GDKIVLTGSMRQ-RRSDWETELESMGLEVRPSVTKQVRLVVAADPYSESTKARKARDYGI 310 Query: 707 KIMNE 711 I+ E Sbjct: 311 PIVAE 315 >gi|283456242|ref|YP_003360806.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1] gi|283102876|gb|ADB09982.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1] Length = 317 Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGV 706 K+V TG++++ +R + + +G V ++++ +++ D + +K KA+ G+ Sbjct: 241 GDKIVLTGSMRQ-RRSDWETELESMGLEVRPSVTKQVRLVVAADPYSESTKARKARDYGI 299 Query: 707 KIMNE 711 I+ E Sbjct: 300 PIVAE 304 >gi|171742687|ref|ZP_02918494.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC 27678] gi|171278301|gb|EDT45962.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC 27678] Length = 328 Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGV 706 K+V TG++++ +R + + +G V ++++ +++ D + +K KA+ G+ Sbjct: 252 GDKIVLTGSMRQ-RRSDWETELESMGLEVRPSVTKQVRLVVAADPYSESTKARKARDYGI 310 Query: 707 KIMNE 711 I+ E Sbjct: 311 PIVAE 315 >gi|47224333|emb|CAG09179.1| unnamed protein product [Tetraodon nigroviridis] Length = 841 Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 17/92 (18%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA-----IL---SRK-TDIIIVGDNP 694 + KLV G L K + + V +LG ++ L S+K + Sbjct: 131 DKPLTGMKLVAVGKLSK-NKDDLKAAVEELGGKITGAANKASLCLSSKKEL------EKM 183 Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 K+E+ ++ GV++++E+ FL ++ L+ Sbjct: 184 TKKMEEVKEAGVRVVSED-FLTDIKSSGKALQ 214 >gi|294811879|ref|ZP_06770522.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] gi|326440385|ref|ZP_08215119.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] gi|294324478|gb|EFG06121.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] Length = 334 Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 4/80 (5%) Query: 644 SSEIE-NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEK 700 ++ ++ F+G + R ++ + G +S +SR T +++ D P SK + Sbjct: 251 GKPLKQGMRVAFSGD-TSVDRELLEDRAFEAGLHISTSVSRLTSLLVTNDPHAPTSKTGR 309 Query: 701 AQQLGVKIMNEEQFLFLLQQ 720 A G I++E F LL+ Sbjct: 310 ATAYGTPIVDEAAFTQLLRD 329 >gi|315048247|ref|XP_003173498.1| polymerase 2 ADP-ribosyltransferase 2 [Arthroderma gypseum CBS 118893] gi|311341465|gb|EFR00668.1| polymerase 2 ADP-ribosyltransferase 2 [Arthroderma gypseum CBS 118893] Length = 739 Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 5/78 (6%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---PGSKLEK 700 S + + +V +G+ + + V QLG SA ++ +I G+K ++ Sbjct: 2 SKILAGQVVVVSGSFRSYNHEAIKYIVEQLGGSFSATVTDACTHLITSKAAHPAGTKNQQ 61 Query: 701 AQQLG--VKIMNEEQFLF 716 A LG +KI++ + Sbjct: 62 AIALGNDIKIVSLDWLTE 79 >gi|328771464|gb|EGF81504.1| hypothetical protein BATDEDRAFT_87455 [Batrachochytrium dendrobatidis JAM81] Length = 786 Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 2/77 (2%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 ++ + +G L + R+ ++ V +LG + + +I K + A +LGV Sbjct: 5 LQGFVVCVSG-LSEPDRNIVEQRVIELGGKFTGSFTTHVTHLISSSTSTDKYKVALELGV 63 Query: 707 KIMNEEQFLFLLQQYNT 723 I++ Q++ L+ N Sbjct: 64 PIISP-QWVSCLESNND 79 >gi|317049607|ref|YP_004117255.1| BRCT domain-containing protein [Pantoea sp. At-9b] gi|316951224|gb|ADU70699.1| BRCT domain protein [Pantoea sp. At-9b] Length = 160 Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 8/72 (11%) Query: 652 LVFTGTLQKIQRHKAQEYVT---QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVK 707 + FTG ++ + + G V + +++ ++ G N G +K+ A+ GV Sbjct: 86 ICFTG----FKKADKERLIECATANGMTVRSSVTQNLQLLCCGYNAGPTKVTAARMKGVV 141 Query: 708 IMNEEQFLFLLQ 719 I++EEQF ++ Sbjct: 142 ILDEEQFADFVK 153 >gi|305680841|ref|ZP_07403648.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Corynebacterium matruchotii ATCC 14266] gi|305659046|gb|EFM48546.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Corynebacterium matruchotii ATCC 14266] Length = 2479 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 15/104 (14%) Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIE---NKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 VE +L S + S + ++ FTGT R ++ G +V Sbjct: 2381 REVVEEILNTGSTGDDATQV---STLTLQPGDRVAFTGT-----RAG-EDAAVAAGLIVG 2431 Query: 679 AILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +++ T +++ D + K +KA+Q + I+ E +F L+ Sbjct: 2432 G-VTKATVVLVAADPDSMSGKAKKARQYHIPIITEHRFNQLVAD 2474 >gi|225021279|ref|ZP_03710471.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC 33806] gi|224946012|gb|EEG27221.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC 33806] Length = 2493 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 15/104 (14%) Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIE---NKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 VE +L S + S + ++ FTGT R ++ G +V Sbjct: 2395 REVVEEILNTGSTGDDATQV---STLTLQPGDRVAFTGT-----RAG-EDAAVAAGLIVG 2445 Query: 679 AILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +++ T +++ D + K +KA+Q + I+ E +F L+ Sbjct: 2446 G-VTKATVVLVAADPDSMSGKAKKARQYHIPIITEHRFNQLVAD 2488 >gi|301623749|ref|XP_002941174.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Xenopus (Silurana) tropicalis] Length = 988 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 25/105 (23%) Query: 638 RHEKNVSSEIEN-KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKTDIII 689 + N K LV G L K + + + + LG V+ +S K ++ Sbjct: 353 EETVPEGKPLTNAKVLVI-GKLSK-NKDEVKALIEGLGGKVTGSAHKATLCISTKKEV-- 408 Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLF----------LLQQYNTT 724 + K+E + V++++ + FL LL QY + Sbjct: 409 --EKMSKKMEDVKAANVRVVS-DDFLKEVESGKSVQELLSQYGIS 450 >gi|72391068|ref|XP_845828.1| hypothetical protein [Trypanosoma brucei TREU927] gi|62176455|gb|AAX70563.1| hypothetical protein, conserved [Trypanosoma brucei] gi|70802364|gb|AAZ12269.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 807 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 27/320 (8%), Positives = 54/320 (16%), Gaps = 21/320 (6%) Query: 176 VLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY-ANPRNAASGILRRLNPTDITR 234 P V + G+ +L + Sbjct: 130 CPLPCHPGPCVPCSAVSGPGSCGCGSTSYTWRCGQPDPLKTCDRICGKMLSCGKH--LCP 187 Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 G + + + G V + + ++ E T Sbjct: 188 DKCHHGACRGCSKQSTTSCHCGSEVRPMRCGSTVFSCGKVCGRELKCGVHHCERMCHEGT 247 Query: 295 LPYDIDG--------------LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLL 340 P +V + G HK K Sbjct: 248 CPPCKTDPSVVATCPCGSVPLVVVRTRCSDPVPVCGNVCGRWLDCGEHKCDAKCHEGGCE 307 Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400 Q+ T P + + N + + Sbjct: 308 PCQQQVAATCSCGKTQATLPCLMRRSFRCNKVCKAALSCGKHQCRARCCPARKGNNADAH 367 Query: 401 VLVKRAGEVIPKVVDIIVNERHPDAQP----FSFPSFCPICQSRVVRDLNPKTGKLVAAH 456 + + + + + S C ++ T Sbjct: 368 CCRQVCNKKLSCGHNCMELCHRGPCPSCPNVVSERLRCRCGAEELMPPQPCGTKPPQCNR 427 Query: 457 RCTGGLACSAQQLERLKHFV 476 C+ L C + HF Sbjct: 428 PCSVPLPCGHPTGSHICHFG 447 >gi|321475185|gb|EFX86148.1| hypothetical protein DAPPUDRAFT_222139 [Daphnia pulex] Length = 597 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 10/65 (15%) Query: 652 LVF----TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK--LEKAQQLG 705 +VF TG+ + A E +LGA V S+K +I D GSK +KA+ LG Sbjct: 28 VVFVDVRTGS-DNRSKSVANEM-ERLGATVVLHFSKKVTHVIFKD--GSKPIYDKARTLG 83 Query: 706 VKIMN 710 + I++ Sbjct: 84 IPIVS 88 >gi|302891805|ref|XP_003044784.1| hypothetical protein NECHADRAFT_43760 [Nectria haematococca mpVI 77-13-4] gi|256725709|gb|EEU39071.1| hypothetical protein NECHADRAFT_43760 [Nectria haematococca mpVI 77-13-4] Length = 853 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + TG ++ R + +T G + L++K +IV G K E A+Q G+ Sbjct: 149 ICLTGFGEQ--RDEIALKITSNGGRYTGDLTKKCSHLIVNKPEGRKYEAARQWGI 201 >gi|153816808|ref|ZP_01969475.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126512611|gb|EAZ75205.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] Length = 166 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 + FTG K+ + +E +V ++ DI+ G N G KLEKA + GV I+N Sbjct: 91 VCFTG-FNKLDKAALKELAANNNMIVRKEVTVYLDILCYGINAGPKKLEKAMEQGVMILN 149 Query: 711 EEQFLFLLQ 719 EQF +++ Sbjct: 150 REQFEKMIE 158 >gi|300779659|ref|ZP_07089515.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC 33030] gi|300533769|gb|EFK54828.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC 33030] Length = 959 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIM 709 + FTG++ + R + + G V + + T +++ D K +A++L + I+ Sbjct: 364 IAFTGSMD-VSREEWRTRALSHGLTVGG-VGQNTALLVAANPDTMSRKARRARELNIPIV 421 Query: 710 NEEQFLFLLQ 719 +E F LL Sbjct: 422 SELHFSRLLA 431 >gi|168021393|ref|XP_001763226.1| predicted protein [Physcomitrella patens subsp. patens] gi|162685709|gb|EDQ72103.1| predicted protein [Physcomitrella patens subsp. patens] Length = 865 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 11/90 (12%) Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEY--VTQLGAVVSAILSRKTDIIIV------GD 692 + +V +G ++ R + + + G V+ + +I G Sbjct: 198 ASGEKPFLGMTIVLSG---RLSRKQGARRADIEKHGGKVANAIKPGVTCVIADARDASGG 254 Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 +K A L + ++ EE ++Q Sbjct: 255 GGSTKSADAISLNIPVVREEWITDCIKQKE 284 >gi|261343355|ref|ZP_05971000.1| conserved hypothetical protein [Providencia rustigianii DSM 4541] gi|282568493|gb|EFB74028.1| conserved hypothetical protein [Providencia rustigianii DSM 4541] Length = 295 Score = 47.9 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 15/81 (18%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---------NPGSK 697 I K + TG +R + + G +S ++ +D +++G + G K Sbjct: 205 ISGKAICLTGNFLSGKRSVIASMIEEAGGHISDKVTLTSDYLVIGALSSRDWKYSSHGRK 264 Query: 698 LEKA---QQLG---VKIMNEE 712 +EKA + G +KI E+ Sbjct: 265 IEKAIEDRDQGKSIIKITTED 285 >gi|331700439|ref|YP_004397398.1| hypothetical protein Lbuc_0044 [Lactobacillus buchneri NRRL B-30929] gi|329127782|gb|AEB72335.1| hypothetical protein Lbuc_0044 [Lactobacillus buchneri NRRL B-30929] Length = 92 Score = 47.9 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 13/79 (16%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD------NPGSKLEK 700 + + ++VFTG L + R +A + GA A ++++TD +IVG P L Sbjct: 4 LTDMEIVFTGKLASMPRKQAFAVASAFGAFPKAQINKQTDYLIVGAIHKTINEP---LTT 60 Query: 701 AQQL---GVKIMNEEQFLF 716 ++L +K + E+ F+ Sbjct: 61 -RKLDIPNIKHITEKDFID 78 >gi|290982408|ref|XP_002673922.1| poly(ADP-ribose) synthetase [Naegleria gruberi] gi|284087509|gb|EFC41178.1| poly(ADP-ribose) synthetase [Naegleria gruberi] Length = 969 Score = 47.9 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 36/67 (53%), Gaps = 6/67 (8%) Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----NPGSKLEKAQQLGVKIMN 710 +G L +++ + QE + + GA +S ++ + +K++KA++ GV I++ Sbjct: 289 SGKLS-MKQSELQEIIEENGATFLKDVSSGCTHLVCSESEYDKETTKVKKAKKQGVLIVD 347 Query: 711 EEQFLFL 717 E+ ++ + Sbjct: 348 ED-WIHM 353 >gi|269125769|ref|YP_003299139.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM 43183] gi|268310727|gb|ACY97101.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM 43183] Length = 328 Score = 47.9 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 28/104 (26%) Query: 643 VSSEI-ENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD-------- 692 + + K+VFTG + + R + + G V + +SR T +++ D Sbjct: 224 AGGPLVQGMKVVFTG--ETLTPRQELADRAAGAGLNVMSTVSRFTSVLVAADVHAASAKA 281 Query: 693 -----NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731 GV I++E FL LLQ +R+ + + Sbjct: 282 RRARAE-----------GVPIIDEPTFLRLLQDVRPGVRLDEPE 314 >gi|115944996|ref|XP_001196870.1| PREDICTED: similar to Poly [ADP-ribose] polymerase 1 (PARP-1) (ADPRT) (NAD(+) ADP-ribosyltransferase 1) (Poly[ADP-ribose] synthetase 1), partial [Strongylocentrotus purpuratus] Length = 975 Score = 47.9 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 6/93 (6%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---- 692 +K + N +V G L K + + + LG V+ ++ +T +I + Sbjct: 347 KIVKKPEDKALYNCTIVLHGKLSK-SNKQLKTTIQDLGGEVATKITPETACVISNEAEVK 405 Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 K+++AQ V +++E+ FL ++ L Sbjct: 406 KMNKKMKEAQSNDVHVVSED-FLDAVKNGGAAL 437 >gi|321467495|gb|EFX78485.1| hypothetical protein DAPPUDRAFT_246317 [Daphnia pulex] Length = 71 Score = 47.9 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 18/40 (45%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 + +V T L+ + R +A+ V + G +S+ T Sbjct: 32 LTGLTIVVTSILESLHREEAEGLVKKYGGKAPKAVSKNTT 71 >gi|328953949|ref|YP_004371283.1| Bifunctional protein folD [Desulfobacca acetoxidans DSM 11109] gi|328454273|gb|AEB10102.1| Bifunctional protein folD [Desulfobacca acetoxidans DSM 11109] Length = 299 Score = 47.5 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 22/83 (26%) Query: 663 RHKAQEYVTQLGAV---VSAILSRKTDIIIVGDNPGS------KLEKAQQLG---V---- 706 R + ++ V L A V +++ I+VG++PGS K + A +LG V Sbjct: 16 REELKQEVADLKAKHNIVPGLVT-----ILVGEDPGSVSYVTAKQKTAHELGFYSVQDSQ 70 Query: 707 -KIMNEEQFLFLLQQYNTTLRIH 728 ++E L L+ +YN ++H Sbjct: 71 PPTISEADLLALIDKYNKDPKLH 93 >gi|316976507|gb|EFV59792.1| ATPase, AAA family [Trichinella spiralis] Length = 774 Score = 47.5 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 3/58 (5%) Query: 628 LLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 L +E ++G E +E + V +G L+ + R + + + G V+ S+ Sbjct: 142 LQREGPRALGTREIPKGAENCFQGLTFVLSGILETVDREDVKLLIQKYGGRVTGA-SK 198 >gi|189065421|dbj|BAG35260.1| unnamed protein product [Homo sapiens] Length = 1014 Score = 47.5 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 41/93 (44%), Gaps = 19/93 (20%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSA--------ILSR 683 P+ + + N K++ TL K+ R + + + +LG ++ ++ Sbjct: 377 PAAVNSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCSSTK 433 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 K + + K+E+ ++ +++++E+ FL Sbjct: 434 KE---V--EKMNKKMEEVKEANIRVVSED-FLQ 460 >gi|130782|sp|P11103|PARP1_MOUSE RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1; AltName: Full=NAD(+) ADP-ribosyltransferase 1; Short=ADPRT 1; AltName: Full=Poly[ADP-ribose] synthase 1; Short=msPARP gi|49894|emb|CAA32421.1| unnamed protein product [Mus musculus] Length = 1013 Score = 47.5 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 41/92 (44%), Gaps = 17/92 (18%) Query: 634 PSIGRHEKNVSSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAI-------LS-RK 684 P+ + N K+ T G L + + +A+ + +LG ++ +S +K Sbjct: 377 PTAVNSSAPADKPLSNMKI-LTLGKLSQ-NKDEAKAVIEKLGGKLTGSANKASLCISIKK 434 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + + K+E+ ++ +++++E+ FL Sbjct: 435 E---V--EKMNKKMEEVKEANIRVVSED-FLQ 460 >gi|291531224|emb|CBK96809.1| hypothetical protein EUS_17190 [Eubacterium siraeum 70/3] Length = 598 Score = 47.5 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 49/108 (45%), Gaps = 16/108 (14%) Query: 625 VEALLKEVSPSIGRHEKNVSSE---IENKKLVFTG-TLQKIQRHKAQEYVTQLGAVV-SA 679 + L+ E + ++ + I++K V TG +LQ+ + ++ + G V + Sbjct: 493 IRQLVFETKEEFMKKAEDNRHKYAWIKDKVFVHTGLSLQEES--EFDSFIFENGGTVRKS 550 Query: 680 ILSRKTDIIIVGDN---PGSKLEKAQQL-----GVKIMNEEQFLFLLQ 719 + TD ++ + KL KA++L G++I+ E++ L+ Sbjct: 551 TV-LNTDYLVYNADYDHETVKLRKARELKEKGSGIEILTTEEWKKLID 597 >gi|320168213|gb|EFW45112.1| polymerase [Capsaspora owczarzaki ATCC 30864] Length = 968 Score = 47.5 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 8/73 (10%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII------IVGDNPGSKLE 699 ++ +VF G+ + V +LG V+ ++ KT I+ + + G K+ Sbjct: 342 PFDSMTIVFAGSNFSTTQKALGAIVKELGGAVATNVTDKTTIVISTPEEVANE--GKKIS 399 Query: 700 KAQQLGVKIMNEE 712 A + + I++E+ Sbjct: 400 DALERHIPILSED 412 >gi|261329277|emb|CBH12258.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 807 Score = 47.5 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 27/320 (8%), Positives = 54/320 (16%), Gaps = 21/320 (6%) Query: 176 VLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY-ANPRNAASGILRRLNPTDITR 234 P V + G+ +L + Sbjct: 130 CPLPCHPGPCVPCSAVSGPGSCGCGSTSYTWRCGQPDPLKTCDRFCGKMLSCGKH--LCP 187 Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 G + + + G V + + ++ E T Sbjct: 188 DKCHHGACRGCSKQSTTSCHCGSEVRPMRCGSTVFSCGKVCGRELKCGVHHCERMCHEGT 247 Query: 295 LPYDIDG--------------LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLL 340 P +V + G HK K Sbjct: 248 CPPCKTDPSVVATCPCGSVPLVVVRTRCSDPVPVCGNVCGRWLDCGEHKCDAKCHEGGCE 307 Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400 Q+ T P + + N + + Sbjct: 308 PCQQQVAATCSCGKTQATLPCLMRRSFRCNKVCKAALSCGKHQCRARCCPARKGNNADAH 367 Query: 401 VLVKRAGEVIPKVVDIIVNERHPDAQP----FSFPSFCPICQSRVVRDLNPKTGKLVAAH 456 + + + + + S C ++ T Sbjct: 368 CCRQVCNKKLSCGHNCMELCHRGPCPSCPNVVSERLLCRCGAEELMPPQPCGTKPPQCNR 427 Query: 457 RCTGGLACSAQQLERLKHFV 476 C+ L C + HF Sbjct: 428 PCSVPLPCGHPTGSHICHFG 447 >gi|84501246|ref|ZP_00999451.1| hypothetical protein OB2597_12813 [Oceanicola batsensis HTCC2597] gi|84390537|gb|EAQ03025.1| hypothetical protein OB2597_12813 [Oceanicola batsensis HTCC2597] Length = 2095 Score = 47.5 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 21/44 (47%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690 ++ K V TG + R + + + G + ++ +TD ++V Sbjct: 2005 LKGKVFVLTGKMSMGPRSLIGDEIARRGGTLKNTVTDETDYVVV 2048 >gi|213025273|ref|ZP_03339720.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 266 Score = 47.1 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 80/216 (37%), Gaps = 18/216 (8%) Query: 206 IAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 R N R+ A+G+L R + L F+ + ++ + L Sbjct: 10 HIQQRMGGMNARSKAAGMLMRQDNASALNSLGIFIWAWPDGPANMPERLSQLAKAGFSLT 69 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 + V+ A+ + + S LP+ DG+V ++ + + W+ Sbjct: 70 KKYSLAVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQYWRPGQGD--WL 122 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 + K+ ++ I +G++G +T VA L PV + + + Sbjct: 123 AAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI-----------G 171 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 DI GD++LV AG+ IP++ +++ R Sbjct: 172 SVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSR 207 >gi|227523370|ref|ZP_03953419.1| hypothetical protein HMPREF0519_1079 [Lactobacillus hilgardii ATCC 8290] gi|227089476|gb|EEI24788.1| hypothetical protein HMPREF0519_1079 [Lactobacillus hilgardii ATCC 8290] Length = 93 Score = 47.1 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 13/79 (16%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD------NPGSKLEK 700 + + ++VFTG L + R +A + GA+ A ++++T+ ++VG P L Sbjct: 4 LTDMEIVFTGKLASMPRKQAFAVASAFGALPKAQVTQQTNYLVVGAIHKTIGEP---LTT 60 Query: 701 AQQLGVK-I--MNEEQFLF 716 ++L + I + E+ F+ Sbjct: 61 -RKLDIPDIKHITEKDFID 78 >gi|109018052|ref|XP_001090984.1| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 4 [Macaca mulatta] Length = 1014 Score = 47.1 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 43/92 (46%), Gaps = 17/92 (18%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684 P+ G + + N K++ TL K+ R + + + +LG ++ +S K Sbjct: 377 PAAGNSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 433 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 ++ + K+E+ ++ +++++E+ FL Sbjct: 434 KEV----EKMNKKMEEVKEANIRVVSED-FLQ 460 >gi|297280655|ref|XP_001090628.2| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 1 [Macaca mulatta] Length = 993 Score = 47.1 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 43/92 (46%), Gaps = 17/92 (18%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684 P+ G + + N K++ TL K+ R + + + +LG ++ +S K Sbjct: 356 PAAGNSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 412 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 ++ + K+E+ ++ +++++E+ FL Sbjct: 413 KEV----EKMNKKMEEVKEANIRVVSED-FLQ 439 >gi|209528273|ref|ZP_03276736.1| excinuclease ABC, C subunit [Arthrospira maxima CS-328] gi|209491293|gb|EDZ91685.1| excinuclease ABC, C subunit [Arthrospira maxima CS-328] Length = 624 Score = 47.1 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 15/116 (12%), Positives = 34/116 (29%), Gaps = 17/116 (14%) Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF--IFSLGIRH 561 I +P + L + ++ L + + + + I LG Sbjct: 521 IFVPGESQPLTTHPEQPGVQLLRRLRDEAHRFAVSFHRNQRSKRMKRSHLDDIPGLGHHR 580 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 + L ++ S L VP +G+ +A+ I +++ Sbjct: 581 Q-----KLLLGHFRSIDYIRMATPT----------QLAEVPGIGEKLARQIYDYFH 621 >gi|332252144|ref|XP_003275213.1| PREDICTED: poly [ADP-ribose] polymerase 1 [Nomascus leucogenys] Length = 955 Score = 47.1 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 17/92 (18%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684 P+ + + N K++ TL K+ R + + + +LG ++ +S K Sbjct: 377 PTAVDSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 433 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 ++ + K+E+ ++ +++++E+ FL Sbjct: 434 KEV----EKMNKKMEEVKEANIRVVSED-FLQ 460 >gi|6978455|ref|NP_037195.1| poly [ADP-ribose] polymerase 1 [Rattus norvegicus] gi|3123251|sp|P27008|PARP1_RAT RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1; AltName: Full=NAD(+) ADP-ribosyltransferase 1; Short=ADPRT 1; AltName: Full=Poly[ADP-ribose] synthase 1 gi|2896792|gb|AAC53544.1| poly(ADP-ribose) polymerase [Rattus norvegicus] gi|55250408|gb|AAH85765.1| Poly (ADP-ribose) polymerase 1 [Rattus norvegicus] gi|149040870|gb|EDL94827.1| poly (ADP-ribose) polymerase family, member 1 [Rattus norvegicus] Length = 1014 Score = 46.7 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Query: 634 PSIGRHEKNVSSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSR 683 P+ + N K+ T G L + + +A+ + +LG ++ ++ Sbjct: 378 PTAVNSSAPADKPLSNMKI-LTLGKLSQ-NKDEAKAMIEKLGGKLTGSANK 426 >gi|301782649|ref|XP_002926747.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Ailuropoda melanoleuca] Length = 1018 Score = 46.7 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 41/93 (44%), Gaps = 16/93 (17%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684 P+ + + K++ TL K+ R + + + +LG ++ +S K Sbjct: 378 PAAVNSSTPPDKPLSSMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 434 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 ++ + K+E+ ++ G+++++E+ L Sbjct: 435 KEV----EKMSKKMEEVREAGIRVVSEDFLRDL 463 >gi|124009105|ref|ZP_01693788.1| leucine-rich repeat containing protein [Microscilla marina ATCC 23134] gi|123985319|gb|EAY25239.1| leucine-rich repeat containing protein [Microscilla marina ATCC 23134] Length = 640 Score = 46.7 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 3/42 (7%) Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNE---EQFLFLLQQY 721 + T ++VG+NP KL KA ++G+ I+ + + FL ++ + Sbjct: 307 KSTTHLVVGENPKKKLNKALEMGIPIVAQGRLKDFLHTIEDH 348 >gi|229489161|ref|ZP_04383027.1| 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase [Rhodococcus erythropolis SK121] gi|229324665|gb|EEN90420.1| 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase [Rhodococcus erythropolis SK121] Length = 264 Score = 46.7 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 29/90 (32%) Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ- 703 + +E K +V TG I R AQ GA V ++ +P +A++ Sbjct: 2 NRLEGKNVVITGAASGIGRAAAQLMA-AEGAKV----------LVADLDP----ARAEEA 46 Query: 704 -------------LGVKIMNEEQFLFLLQQ 720 GV +MNE+ ++++ Sbjct: 47 AVAIRETGGNAMGFGVDVMNEDSLAAMIEK 76 >gi|169598892|ref|XP_001792869.1| hypothetical protein SNOG_02255 [Phaeosphaeria nodorum SN15] gi|160704493|gb|EAT90467.2| hypothetical protein SNOG_02255 [Phaeosphaeria nodorum SN15] Length = 669 Score = 46.7 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 8/89 (8%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN----PGSKLEKA 701 ++ + +G + +T LGA S+ ++ T+I+I + +K++ A Sbjct: 14 PLDGCVIATSGKFPGTTQTALASRITSLGATASSKVTSDTNILIATEKDYESNSTKVKAA 73 Query: 702 QQLGVKIMNEEQFLFLLQQYNTTLRIHDD 730 + ++ L L++ +T D+ Sbjct: 74 ASHDIPVVT----LDWLEECESTDAKVDE 98 >gi|32396668|gb|AAP49292.1| NAD-dependent DNA ligase [Bacillus sp. IMG-2] Length = 121 Score = 46.7 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 45/121 (37%), Positives = 67/121 (55%), Gaps = 1/121 (0%) Query: 214 ANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 ANPRNA++G LR+L+P R L+ FV+ + + + E L + LGF N Sbjct: 1 ANPRNASAGSLRQLDPKIAAKRNLDIFVYNIAELGDTGVSSHSEALDLLDELGFKTNRER 60 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 R+ ++ +++ S LPYDIDG+V KVD Q+ LG A+SPRW I++KF Sbjct: 61 RKCKNIDEVIELLDQLLEKHSQLPYDIDGVVIKVDSLRQQEALGATAKSPRWAIAYKFPA 120 Query: 333 K 333 + Sbjct: 121 E 121 >gi|115479373|ref|NP_001063280.1| Os09g0440200 [Oryza sativa Japonica Group] gi|51091406|dbj|BAD36149.1| unknown protein [Oryza sativa Japonica Group] gi|113631513|dbj|BAF25194.1| Os09g0440200 [Oryza sativa Japonica Group] Length = 548 Score = 46.7 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 1/62 (1%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 + TG L K R + +E ++G S L K ++V G K E A + Sbjct: 51 DGPFAGLVICVTG-LSKEARTQVKEATERMGGEYSGSLHPKCTHLVVQSFAGRKFEHAVK 109 Query: 704 LG 705 G Sbjct: 110 HG 111 >gi|255521960|ref|ZP_05389197.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J1-175] Length = 34 Score = 46.7 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 8/31 (25%), Positives = 13/31 (41%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEY 48 +K L + + YY P + D+EY Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEY 34 >gi|312144274|ref|YP_003995720.1| DNA integrity scanning, DisA, linker region [Halanaerobium sp. 'sapolanicus'] gi|311904925|gb|ADQ15366.1| DNA integrity scanning, DisA, linker region [Halanaerobium sp. 'sapolanicus'] Length = 359 Score = 46.7 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 21/190 (11%), Positives = 56/190 (29%), Gaps = 2/190 (1%) Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 + + + + ++ ++S + Q + + Sbjct: 169 TNLSALEFEDLVTVSDVVTVIQRTEMVLKIQREIEKYISELGSEGRLIKMQLEELVSNVK 228 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 + + L+ +E++ ++I+K S F Sbjct: 229 EEGLLLIEDYISEELEEDLTHPEAVLESL-TDWSSDEILTLNTISKALGYSGSVNAFDES 287 Query: 559 IRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 + G I + + + +N E ++ A L V +G++ AQAI + + Sbjct: 288 VSPRGYRILKKIPRLPMPVIENLVDEFKDLQAIIRASADELDDVDGIGEVRAQAIKDGLR 347 Query: 618 NPRNICAVEA 627 R+ ++ Sbjct: 348 RLRDQVLLDR 357 >gi|229587518|ref|YP_002860556.1| hypothetical protein CLJ_0249 [Clostridium botulinum Ba4 str. 657] gi|229260200|gb|ACQ51237.1| hypothetical protein CLJ_0249 [Clostridium botulinum Ba4 str. 657] Length = 125 Score = 46.7 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 24/53 (45%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + + ++ +++ H YY+ + +I D YD R + + +PDL Sbjct: 30 KKAIIELINKRRRQVLVHSCTYYRLNDSLIDDYTYDKWARELENLQDMYPDLL 82 >gi|297661826|ref|XP_002809428.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 1 [Pongo abelii] Length = 970 Score = 46.7 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 17/92 (18%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684 P+ + + N K++ TL K+ R + + + +LG ++ +S K Sbjct: 333 PAAVNSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 389 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 ++ + K+E+ ++ +++++E+ FL Sbjct: 390 KEV----EKMNKKMEEVKEANIRVVSED-FLQ 416 >gi|126433476|ref|YP_001069167.1| AAA ATPase [Mycobacterium sp. JLS] gi|126233276|gb|ABN96676.1| AAA ATPase [Mycobacterium sp. JLS] Length = 782 Score = 46.7 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%) Query: 652 LVFTGTLQKIQ-----RHKAQEYVTQLGAVVSAILSRKTDI-IIVGDNPGS---KLEKAQ 702 + FTGT R + + G ++ KT ++V G+ K KAQ Sbjct: 701 ICFTGTALDPSGRVVEREEIERMAEAAGLKPVRSVT-KTRCEVLVTAEAGTQSGKARKAQ 759 Query: 703 QLGVKIMNEEQFLFLL 718 + G + E+F L Sbjct: 760 EYGKPVFTAEEFFAWL 775 >gi|108797836|ref|YP_638033.1| ATPas [Mycobacterium sp. MCS] gi|119866930|ref|YP_936882.1| AAA ATPase [Mycobacterium sp. KMS] gi|108768255|gb|ABG06977.1| ATPase [Mycobacterium sp. MCS] gi|119693019|gb|ABL90092.1| AAA ATPase [Mycobacterium sp. KMS] Length = 782 Score = 46.7 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%) Query: 652 LVFTGTLQKIQ-----RHKAQEYVTQLGAVVSAILSRKTDI-IIVGDNPGS---KLEKAQ 702 + FTGT R + + G ++ KT ++V G+ K KAQ Sbjct: 701 ICFTGTALDPSGRVVEREEIERMAEAAGLKPVRSVT-KTRCEVLVTAEAGTQSGKARKAQ 759 Query: 703 QLGVKIMNEEQFLFLL 718 + G + E+F L Sbjct: 760 EYGKPVFTAEEFFAWL 775 >gi|17380223|sp|Q9R152|PARP1_CRIGR RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1; AltName: Full=NAD(+) ADP-ribosyltransferase 1; Short=ADPRT 1; AltName: Full=Poly[ADP-ribose] synthase 1 gi|5616520|gb|AAD45817.1|AF168781_1 poly ADP-ribose polymerase [Cricetulus griseus] Length = 1013 Score = 46.7 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 15/82 (18%) Query: 643 VSSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKTDIIIVGDNP 694 + N K+ T G L + + +A+ + +LG ++ +S K ++ + Sbjct: 386 ADKPLSNMKI-LTLGKLSQ-SKDEAKATIEKLGGKLTGSANNASLCISTKKEV----EKM 439 Query: 695 GSKLEKAQQLGVKIMNEEQFLF 716 G K+E+ Q V+++ E+ FL Sbjct: 440 GKKMEEVQAANVRVVCED-FLQ 460 >gi|190267|gb|AAA60155.1| poly(ADP-ribose) polymerase [Homo sapiens] Length = 1014 Score = 46.7 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 17/92 (18%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684 P+ + + N K++ TL K+ R + + + +LG ++ +S K Sbjct: 377 PAAVNSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 433 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 ++ + K+E+ ++ +++++E+ FL Sbjct: 434 KEV----EKMNKKMEEVKEANIRVVSED-FLQ 460 >gi|297661828|ref|XP_002809429.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 2 [Pongo abelii] Length = 951 Score = 46.7 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 17/92 (18%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684 P+ + + N K++ TL K+ R + + + +LG ++ +S K Sbjct: 314 PAAVNSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 370 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 ++ + K+E+ ++ +++++E+ FL Sbjct: 371 KEV----EKMNKKMEEVKEANIRVVSED-FLQ 397 >gi|281354063|gb|EFB29647.1| hypothetical protein PANDA_016433 [Ailuropoda melanoleuca] Length = 981 Score = 46.7 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 41/93 (44%), Gaps = 16/93 (17%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684 P+ + + K++ TL K+ R + + + +LG ++ +S K Sbjct: 341 PAAVNSSTPPDKPLSSMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 397 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 ++ + K+E+ ++ G+++++E+ L Sbjct: 398 KEV----EKMSKKMEEVREAGIRVVSEDFLRDL 426 >gi|190167|gb|AAA60137.1| poly(ADP-ribose) polymerase [Homo sapiens] Length = 1014 Score = 46.7 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 17/92 (18%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684 P+ + + N K++ TL K+ R + + + +LG ++ +S K Sbjct: 377 PAAVNSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 433 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 ++ + K+E+ ++ +++++E+ FL Sbjct: 434 KEV----EKMNKKMEEVKEANIRVVSED-FLQ 460 >gi|168270914|dbj|BAG10250.1| poly [ADP-ribose] polymerase-1 [synthetic construct] Length = 1014 Score = 46.7 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 17/92 (18%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684 P+ + + N K++ TL K+ R + + + +LG ++ +S K Sbjct: 377 PAAVNSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 433 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 ++ + K+E+ ++ +++++E+ FL Sbjct: 434 KEV----EKMNKKMEEVKEANIRVVSED-FLQ 460 >gi|22902366|gb|AAH37545.1| Poly (ADP-ribose) polymerase 1 [Homo sapiens] gi|123996301|gb|ABM85752.1| poly (ADP-ribose) polymerase family, member 1 [synthetic construct] Length = 1014 Score = 46.7 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 17/92 (18%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684 P+ + + N K++ TL K+ R + + + +LG ++ +S K Sbjct: 377 PAAVNSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 433 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 ++ + K+E+ ++ +++++E+ FL Sbjct: 434 KEV----EKMNKKMEEVKEANIRVVSED-FLQ 460 >gi|156523968|ref|NP_001609.2| poly [ADP-ribose] polymerase 1 [Homo sapiens] gi|130781|sp|P09874|PARP1_HUMAN RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1; AltName: Full=NAD(+) ADP-ribosyltransferase 1; Short=ADPRT 1; AltName: Full=Poly[ADP-ribose] synthase 1 gi|21693601|gb|AAM75364.1|AF524947_1 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) [Homo sapiens] gi|178190|gb|AAA51663.1| NAD+ ADP-ribosyltransferase [Homo sapiens] gi|55663671|emb|CAH70215.1| poly (ADP-ribose) polymerase 1 [Homo sapiens] gi|55959449|emb|CAI12102.1| poly (ADP-ribose) polymerase 1 [Homo sapiens] gi|119590189|gb|EAW69783.1| poly (ADP-ribose) polymerase family, member 1, isoform CRA_a [Homo sapiens] gi|119590190|gb|EAW69784.1| poly (ADP-ribose) polymerase family, member 1, isoform CRA_a [Homo sapiens] Length = 1014 Score = 46.7 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 17/92 (18%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684 P+ + + N K++ TL K+ R + + + +LG ++ +S K Sbjct: 377 PAAVNSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 433 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 ++ + K+E+ ++ +++++E+ FL Sbjct: 434 KEV----EKMNKKMEEVKEANIRVVSED-FLQ 460 >gi|311068875|ref|YP_003973798.1| hypothetical protein BATR1942_09670 [Bacillus atrophaeus 1942] gi|310869392|gb|ADP32867.1| hypothetical protein BATR1942_09670 [Bacillus atrophaeus 1942] Length = 100 Score = 46.7 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 22/50 (44%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 + + + ++I H YYQ ++ II D +D + + +P+ Sbjct: 3 KDILELIGRRRRQILVHSFLYYQLNENIIADHTFDLWSKELVQLQEKYPE 52 >gi|123981466|gb|ABM82562.1| poly (ADP-ribose) polymerase family, member 1 [synthetic construct] Length = 1014 Score = 46.7 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 17/92 (18%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684 P+ + + N K++ TL K+ R + + + +LG ++ +S K Sbjct: 377 PAAVNSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 433 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 ++ + K+E+ ++ +++++E+ FL Sbjct: 434 KEV----EKMNKKMEEVKEANIRVVSED-FLQ 460 >gi|194382466|dbj|BAG64403.1| unnamed protein product [Homo sapiens] Length = 993 Score = 46.7 bits (109), Expect = 0.016, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 17/92 (18%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684 P+ + + N K++ TL K+ R + + + +LG ++ +S K Sbjct: 356 PAAVNSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 412 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 ++ + K+E+ ++ +++++E+ FL Sbjct: 413 KEV----EKMNKKMEEVKEANIRVVSED-FLQ 439 >gi|337424|gb|AAB59447.1| poly(ADP-ribose) synthetase [Homo sapiens] Length = 1014 Score = 46.7 bits (109), Expect = 0.016, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 17/92 (18%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684 P+ + + N K++ TL K+ R + + + +LG ++ +S K Sbjct: 377 PAAVNSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 433 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 ++ + K+E+ ++ +++++E+ FL Sbjct: 434 KEV----EKMNKKMEEVKEANIRVVSED-FLQ 460 >gi|294055836|ref|YP_003549494.1| excinuclease ABC C subunit domain protein [Coraliomargarita akajimensis DSM 45221] gi|293615169|gb|ADE55324.1| excinuclease ABC C subunit domain protein [Coraliomargarita akajimensis DSM 45221] Length = 490 Score = 46.3 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 10/60 (16%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 + +G +L K++ S + D ++ +V +G A+ +VEF Q Sbjct: 439 DFKGLGPTKRMALLKHFGSLDKLRKA----------DAEAITQVEGIGPKTAKGLVEFLQ 488 >gi|15927574|ref|NP_375107.1| ATP-dependent helicase [Staphylococcus aureus subsp. aureus N315] gi|29028621|ref|NP_803310.1| Pol III-like ATP dependent helicase [Staphylococcus phage phi 12] gi|30043986|ref|NP_835521.1| probable ATP-dependent helicase [Staphylococcus phage phiN315] gi|87161004|ref|YP_494621.1| putative exonuclease [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195288|ref|YP_500092.1| exonuclease family protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|118725058|ref|YP_908794.1| probable ATP-dependent helicase [Staphylococcus phage phiNM3] gi|151222134|ref|YP_001332956.1| phage exonuclease [Staphylococcus aureus subsp. aureus str. Newman] gi|161510224|ref|YP_001575883.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253315032|ref|ZP_04838245.1| putative exonuclease [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253729784|ref|ZP_04863949.1| DNA polymerase III epsilon subunit family exonuclease [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|258413674|ref|ZP_05681948.1| phage exonuclease [Staphylococcus aureus A9763] gi|258425109|ref|ZP_05687979.1| phage exonuclease [Staphylococcus aureus A9635] gi|258434316|ref|ZP_05688717.1| exonuclease family protein [Staphylococcus aureus A9299] gi|258447837|ref|ZP_05695972.1| phage exonuclease [Staphylococcus aureus A6224] gi|258452362|ref|ZP_05700372.1| ATP-dependent helicase [Staphylococcus aureus A5948] gi|282917349|ref|ZP_06325104.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus D139] gi|282928799|ref|ZP_06336392.1| exodeoxyribonuclease [Staphylococcus aureus A10102] gi|283771164|ref|ZP_06344055.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus H19] gi|294849552|ref|ZP_06790294.1| exodeoxyribonuclease [Staphylococcus aureus A9754] gi|295428583|ref|ZP_06821210.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589943|ref|ZP_06948583.1| exonuclease [Staphylococcus aureus subsp. aureus MN8] gi|13701793|dbj|BAB43086.1| probable ATP-dependent helicase [Staphylococcus aureus subsp. aureus N315] gi|18920545|gb|AAL82285.1| Pol III-like ATP dependent helicase [Staphylococcus phage phi 12] gi|87126978|gb|ABD21492.1| putative exonuclease [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202846|gb|ABD30656.1| exonuclease family [Staphylococcus aureus subsp. aureus NCTC 8325] gi|104641823|gb|ABF73165.1| probable ATP-dependent helicase [Staphylococcus phage phiNM3] gi|150374934|dbj|BAF68194.1| phage exonuclease [Staphylococcus aureus subsp. aureus str. Newman] gi|160369033|gb|ABX30004.1| possible exodeoxyribonuclease [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253726519|gb|EES95248.1| DNA polymerase III epsilon subunit family exonuclease [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257839627|gb|EEV64097.1| phage exonuclease [Staphylococcus aureus A9763] gi|257844692|gb|EEV68736.1| phage exonuclease [Staphylococcus aureus A9635] gi|257849264|gb|EEV73245.1| exonuclease family protein [Staphylococcus aureus A9299] gi|257858934|gb|EEV81802.1| phage exonuclease [Staphylococcus aureus A6224] gi|257859949|gb|EEV82787.1| ATP-dependent helicase [Staphylococcus aureus A5948] gi|269941473|emb|CBI49870.1| putative phage exonuclease [Staphylococcus aureus subsp. aureus TW20] gi|282318976|gb|EFB49331.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus D139] gi|282589534|gb|EFB94622.1| exodeoxyribonuclease [Staphylococcus aureus A10102] gi|283459758|gb|EFC06849.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus H19] gi|285817684|gb|ADC38171.1| Pol III-like ATP dependent helicase, phage associated [Staphylococcus phage phiN315] gi|294823689|gb|EFG40116.1| exodeoxyribonuclease [Staphylococcus aureus A9754] gi|295127565|gb|EFG57204.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577071|gb|EFH95785.1| exonuclease [Staphylococcus aureus subsp. aureus MN8] gi|312830370|emb|CBX35212.1| exonuclease family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315196784|gb|EFU27129.1| possible exodeoxyribonuclease [Staphylococcus aureus subsp. aureus CGS01] gi|320143661|gb|EFW35439.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA177] gi|329724440|gb|EGG60950.1| exonuclease [Staphylococcus aureus subsp. aureus 21189] Length = 310 Score = 46.3 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 15/98 (15%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----- 691 ++V +++K +VFTG + + GA + + ++ KTDI++ G Sbjct: 214 KIEVESVIPILKDKNVVFTGNFDTEK-QDLMILTRKKGAYIRSDVTAKTDILVEGVQDDK 272 Query: 692 --DNPG--SKLEKAQQL-----GVKIMNEEQFLFLLQQ 720 D G SK KA++ ++ +NEE + L+++ Sbjct: 273 YKDVNGLVSKQRKAREYVGNGAKIQFLNEEDLINLIKE 310 >gi|120402192|ref|YP_952021.1| AAA ATPase [Mycobacterium vanbaalenii PYR-1] gi|119955010|gb|ABM12015.1| AAA ATPase [Mycobacterium vanbaalenii PYR-1] Length = 782 Score = 46.3 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 10/79 (12%) Query: 649 NKKLVFTGTLQKIQ-----RHKAQEYVTQLGAVVSAILSR-KTDIII---VGDNPGSKLE 699 ++ FTGT Q R + + T G +S+ + D+++ G G K Sbjct: 701 GVRICFTGTAQDPSGRIVERDEIERLATAAGLTPVKTVSKTRCDVLVTAEAGTQSG-KAR 759 Query: 700 KAQQLGVKIMNEEQFLFLL 718 KA + G + ++F L Sbjct: 760 KAMEYGKPVFTADEFFAWL 778 >gi|49484243|ref|YP_041467.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA252] gi|49242372|emb|CAG41084.1| putative exonuclease [Staphylococcus aureus subsp. aureus MRSA252] Length = 310 Score = 46.3 bits (108), Expect = 0.019, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 15/98 (15%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----- 691 ++V +++K +VFTG + + GA + + ++ KTDI++ G Sbjct: 214 KIEVESVIPILKDKNVVFTGNFDTEK-QDLMILTRKKGAYIRSDVTAKTDILVEGVQDDK 272 Query: 692 --DNPG--SKLEKAQQL-----GVKIMNEEQFLFLLQQ 720 D G SK KA++ ++ +NEE + L+++ Sbjct: 273 YKDVNGLVSKQRKAREYVGNGAKIQFLNEEDLINLIKE 310 >gi|153952796|ref|YP_001393561.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium kluyveri DSM 555] gi|219853461|ref|YP_002470583.1| hypothetical protein CKR_0118 [Clostridium kluyveri NBRC 12016] gi|189028986|sp|A5N4I2|MURC_CLOK5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|254765992|sp|B9DY44|MURC_CLOK1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|146345677|gb|EDK32213.1| MurC [Clostridium kluyveri DSM 555] gi|219567185|dbj|BAH05169.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 457 Score = 46.3 bits (108), Expect = 0.019, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 11/75 (14%) Query: 664 HKAQEYVTQLGAVV-----SAILSRKTDIIIVGDNPGSK----LEKAQQLGVKIMNEEQF 714 +A E + GA V S ++ D+++ SK L KA+ L + +M+ +F Sbjct: 43 SEATERLELKGAKVYIGQISQNITSDIDLVVY-TAAISKNNEELLKAKDLNIPLMDRAEF 101 Query: 715 L-FLLQQYNTTLRIH 728 L +++ + + + Sbjct: 102 LGEIMKGHKYNIAVS 116 >gi|149641631|ref|XP_001514646.1| PREDICTED: similar to Poly [ADP-ribose] polymerase 1 (PARP-1) (ADPRT) (NAD(+) ADP-ribosyltransferase 1) (Poly[ADP-ribose] synthetase 1) [Ornithorhynchus anatinus] Length = 972 Score = 46.3 bits (108), Expect = 0.020, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 40/87 (45%), Gaps = 21/87 (24%) Query: 641 KNVSSEIENKKLVFTGTLQKIQRH--KAQEYVTQLGAVVSAI-------LS--RKTDIII 689 + N K++ TL K+ R+ + + + +LG ++ +S ++ Sbjct: 342 VPADKPLSNMKIL---TLGKLSRNKEEMKATIEELGGKLTGSANKASLCISTQKEV---- 394 Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + K+E+ ++ GV++++E +FL Sbjct: 395 --EKMNKKMEEVKEAGVRVVSE-EFLK 418 >gi|262283367|ref|ZP_06061133.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|262260858|gb|EEY79558.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] Length = 77 Score = 46.3 bits (108), Expect = 0.021, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 18/76 (23%) Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--------DNPGSK--------LEKAQQL 704 + R++A ++T+ GA+V +S +T I++ G + SK LE+ Q+ Sbjct: 1 MTRNEAVAFLTERGAIVQGYVSAQTQILVAGHKQLDLFKPDRRSKKYEAVLKRLEEGQE- 59 Query: 705 GVKIMNEEQFLFLLQQ 720 + I++EE F ++++ Sbjct: 60 -ITILSEESFFTIVKE 74 >gi|39947634|ref|XP_363029.1| hypothetical protein MGG_08613 [Magnaporthe oryzae 70-15] gi|145010234|gb|EDJ94890.1| hypothetical protein MGG_08613 [Magnaporthe oryzae 70-15] Length = 733 Score = 46.3 bits (108), Expect = 0.021, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 23/43 (53%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 +E+ + +G + + + ++ +T LG VS ++ KT +I Sbjct: 28 LEDCVVAISGAFPNLTQAQTKDKITSLGGTVSPSVNNKTTHLI 70 >gi|239995979|ref|ZP_04716503.1| Holliday junction DNA helicase motor protein [Alteromonas macleodii ATCC 27126] Length = 206 Score = 45.9 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 12/96 (12%) Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 + + N+D +L+ +P +G A+ +V + + L K Sbjct: 93 MSASQFLASVQNEDVSALVSLPGIGKKTAERLV--------VELKDRLAKFGKAQSIAVP 144 Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + +V R +AQ + LG Sbjct: 145 PPSGDLLSTNTIVA----VNDAREEAQSALIALGYK 176 >gi|72161118|ref|YP_288775.1| exonuclease [Thermobifida fusca YX] gi|71914850|gb|AAZ54752.1| exonuclease [Thermobifida fusca YX] Length = 516 Score = 45.9 bits (107), Expect = 0.026, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 54/117 (46%), Gaps = 8/117 (6%) Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL--VFTGTLQKIQ 662 G + A + E + +N+ V L+ ++ + + + ++ ++ V G +++ Sbjct: 300 GVVTAAELRELQRAAKNLA-VSHLISDLEEAAAAEKARRNGPLKGWRILPV--GEGKELT 356 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GSKLEKAQQLGVKIMNEEQFLFLL 718 +Y GA V+A +++ ++I D +K +A++ GV I+ ++ LL Sbjct: 357 --DVMDYAVDHGAKVAANVTKTVRLVIAPDGVETTKTAQARERGVPILTPKEAWTLL 411 >gi|157364326|ref|YP_001471093.1| helix-hairpin-helix repeat-containing competence protein ComEA [Thermotoga lettingae TMO] gi|157314930|gb|ABV34029.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermotoga lettingae TMO] Length = 180 Score = 45.9 bits (107), Expect = 0.026, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 13/97 (13%) Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 + + I N+ + L+ +P +G A++I+++ ++ ++E L E Sbjct: 43 RKTVQFPIDINSATYEELLEIPGIGPAKARSILDYRESNGPFQSIEDLTNVSGIGRATAE 102 Query: 641 KNVS------SEIENKKLVFTGTLQKIQRHKAQEYVT 671 K S + ENKK+ I R ++ Sbjct: 103 KMASFVDLKYNSFENKKV-------NINRADLEKLSE 132 >gi|307700344|ref|ZP_07637384.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] gi|307614555|gb|EFN93784.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] Length = 744 Score = 45.9 bits (107), Expect = 0.026, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 7/78 (8%) Query: 649 NKKLVFTGT--LQK--IQRHKAQEYVTQLGAVVSAILSR-KTDIIIVGDNP--GSKLEKA 701 ++ FTGT L +R + +E G +++ + D ++ D +K + A Sbjct: 665 GVRICFTGTAMLDGVVYEREEMEEIAWAAGFHPVNNVTKTRCDCLVAADVATMSNKAKNA 724 Query: 702 QQLGVKIMNEEQFLFLLQ 719 + G +++ E FL + Sbjct: 725 ARWGKPVISAEDFLHFVN 742 >gi|269977450|ref|ZP_06184422.1| AAA ATPase [Mobiluncus mulieris 28-1] gi|306819096|ref|ZP_07452810.1| tetratricopeptide (TPR) domain protein [Mobiluncus mulieris ATCC 35239] gi|269934366|gb|EEZ90928.1| AAA ATPase [Mobiluncus mulieris 28-1] gi|304648072|gb|EFM45383.1| tetratricopeptide (TPR) domain protein [Mobiluncus mulieris ATCC 35239] Length = 744 Score = 45.9 bits (107), Expect = 0.026, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 7/78 (8%) Query: 649 NKKLVFTGT--LQK--IQRHKAQEYVTQLGAVVSAILSR-KTDIIIVGDNP--GSKLEKA 701 ++ FTGT L +R + +E G +++ + D ++ D +K + A Sbjct: 665 GVRICFTGTAMLDGVVYEREEMEEIAWAAGFHPVNNVTKTRCDCLVAADVATMSNKAKNA 724 Query: 702 QQLGVKIMNEEQFLFLLQ 719 + G +++ E FL + Sbjct: 725 ARWGKPVISAEDFLHFVN 742 >gi|227875815|ref|ZP_03993941.1| AAA ATPase [Mobiluncus mulieris ATCC 35243] gi|227843563|gb|EEJ53746.1| AAA ATPase [Mobiluncus mulieris ATCC 35243] Length = 744 Score = 45.9 bits (107), Expect = 0.026, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 7/78 (8%) Query: 649 NKKLVFTGT--LQK--IQRHKAQEYVTQLGAVVSAILSR-KTDIIIVGDNP--GSKLEKA 701 ++ FTGT L +R + +E G +++ + D ++ D +K + A Sbjct: 665 GVRICFTGTAMLDGVVYEREEMEEIAWAAGFHPVNNVTKTRCDCLVAADVATMSNKAKNA 724 Query: 702 QQLGVKIMNEEQFLFLLQ 719 + G +++ E FL + Sbjct: 725 ARWGKPVISAEDFLHFVN 742 >gi|298706162|emb|CBJ49090.1| expressed unknown protein [Ectocarpus siliculosus] Length = 306 Score = 45.6 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 8/74 (10%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP----GSKLEKAQ 702 ++ K TG L R + Q + GA VSAI+ ++ ++ + K+ KA Sbjct: 11 LQGKVFGLTGELA---RKELQPMLKAHGATVSAIIHKRVSFVLCTPDAVKYNTQKVRKAL 67 Query: 703 QLGVKIMNEEQFLF 716 + G+ +++ + F+ Sbjct: 68 KHGIPLVS-QGFIA 80 >gi|320165686|gb|EFW42585.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 2504 Score = 45.6 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 637 GRHEKNVSSEIENKKLVFTG--TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 G + N+ V TG +L + + + + G V+ ++R T +++G + Sbjct: 865 GVKNTALDPPFYNQIFVLTGFFSLSSW---QLEAMIVEYGGKVAQAVTRTTTHLLLGAS 920 >gi|157130592|ref|XP_001661932.1| poly [adp-ribose] polymerase [Aedes aegypti] gi|108871855|gb|EAT36080.1| poly [adp-ribose] polymerase [Aedes aegypti] Length = 999 Score = 45.6 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 8/85 (9%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----- 691 K + + V G + + +E + +LG VS+ ++ T I+ Sbjct: 379 EPKIKREKPPLYELQFVILGKTAT-PKDELKEKILKLGGKVSSKIT-NTTAAIISTPDEV 436 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLF 716 + GS++++A+ L ++++ E FL Sbjct: 437 ERMGSRMQEAKDLQIQVV-PEDFLE 460 >gi|309389959|gb|ADO77839.1| DNA integrity scanning, DisA, linker region [Halanaerobium praevalens DSM 2228] Length = 359 Score = 45.6 bits (106), Expect = 0.032, Method: Composition-based stats. Identities = 21/192 (10%), Positives = 55/192 (28%), Gaps = 6/192 (3%) Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 + + L + ++ ++S + Q + + Sbjct: 169 TNLGALEFEDLVTLSDVVTVIQRTEMVLKIQREIEKYISELGSEGRLIKMQLEELVNNVK 228 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL- 557 + L+ +EN+ + + + + + +L Sbjct: 229 KEGILLIEDYISEELEEDTSDPEEVLENLTDWSS---DEILTLNTISKALGYSGSVNALE 285 Query: 558 -GIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 + G I R + + +N + N+ A L V +G++ AQAI + Sbjct: 286 ETVSPRGYRIMRKIPRLPMPVIENLVEHFENLQAIIRASVDDLDDVDGIGEVRAQAIKDG 345 Query: 616 YQNPRNICAVEA 627 + R+ ++ Sbjct: 346 LRRLRDQVLLDR 357 >gi|308179139|ref|YP_003918545.1| exonuclease [Arthrobacter arilaitensis Re117] gi|307746602|emb|CBT77574.1| putative exonuclease [Arthrobacter arilaitensis Re117] Length = 467 Score = 45.6 bits (106), Expect = 0.032, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 17/92 (18%) Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII-VGDNP---- 694 + E+ + L TG + + R +A + GA V +RKT I++ +NP Sbjct: 208 NADPEHELFGQGLTITGGFELLGRREAFQLAASFGASVQLSTTRKTTILVICDENPHAPG 267 Query: 695 ------GSKLEKAQQL------GVKIMNEEQF 714 +K KA + ++IM+E +F Sbjct: 268 FDLRHGTTKARKAHEYITERAQQIRIMSETEF 299 >gi|326429630|gb|EGD75200.1| poly polymerase [Salpingoeca sp. ATCC 50818] Length = 899 Score = 45.6 bits (106), Expect = 0.033, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 10/75 (13%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----NPGSKLEK- 700 E++ GT R + + + + G VS S + II G+ P +K K Sbjct: 237 ELKGMTFKLIGTFST-PRKELEATIAEHGGAVSNK-SAEITHIIAGEKEIAKPKTKRTKA 294 Query: 701 ---AQQLGVKIMNEE 712 A GV IM EE Sbjct: 295 YKQAAATGVPIMKEE 309 >gi|307352953|ref|YP_003894004.1| helicase domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307156186|gb|ADN35566.1| helicase domain protein [Methanoplanus petrolearius DSM 11571] Length = 766 Score = 45.6 bits (106), Expect = 0.034, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 10/57 (17%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +G + AR L ++ S Q+ + L VP +GD IA+++ E Sbjct: 713 SFPSIGPKNARDLLDHFGSIQDIMNA----------NIEELKVVPGIGDKIAKSVFE 759 >gi|227821159|ref|YP_002825129.1| superfamily I DNA and RNA helicases and helicasesubunits-like protein [Sinorhizobium fredii NGR234] gi|227340158|gb|ACP24376.1| superfamily I DNA and RNA helicases and helicasesubunits-like protein [Sinorhizobium fredii NGR234] Length = 302 Score = 45.6 bits (106), Expect = 0.034, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 9/62 (14%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII-IVGDNP--------GSKLEKAQ 702 V TG R + G + + R T+ + + + G K+ KA Sbjct: 220 FVLTGKFTLGPRKAIHGMIADRGGDFKSSVCRNTNYLCVAAEASRDWRHSHEGLKIMKAI 279 Query: 703 QL 704 +L Sbjct: 280 EL 281 >gi|300175111|emb|CBK20422.2| unnamed protein product [Blastocystis hominis] Length = 165 Score = 45.6 bits (106), Expect = 0.035, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 2/46 (4%) Query: 647 IENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ V TG L K + + + G V +S KT+ ++ G Sbjct: 74 LDGLVFVVTG-LSKYLTVQEISDLIFDHGGVERTAVSGKTNYLVAG 118 >gi|300900188|ref|ZP_07118377.1| hypothetical protein HMPREF9552_04248 [Escherichia coli MS 198-1] gi|300356303|gb|EFJ72173.1| hypothetical protein HMPREF9552_04248 [Escherichia coli MS 198-1] Length = 130 Score = 45.6 bits (106), Expect = 0.035, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 11/134 (8%) Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 + L + K+ + G + + I + +++ L +F+ GI V Sbjct: 5 LVEKCYVQKPLDMF-SMTAGKLTGLDQSGPKLASIICRGIEQAKDVQLGELLFACGIYGV 63 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 E A LAK + + + SL+ L+ + +A F+++P N+ Sbjct: 64 EEEEAWLLAKRFSNLEALYGA----------SIDSLMSYNLLNEAVAVNTYNFFRHPLNV 113 Query: 623 CAVEALLKEVSPSI 636 A+ L E + Sbjct: 114 SALNELQTEGGLKV 127 >gi|74144748|dbj|BAE27352.1| unnamed protein product [Mus musculus] Length = 1014 Score = 45.2 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Query: 634 PSIGRHEKNVSSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSR 683 P+ + N K+ T G L + + +A+ + +LG ++ ++ Sbjct: 378 PTAVNSSAPADKPLSNMKI-LTLGKLSQ-NKDEAKAVIEKLGGKLTGSANK 426 >gi|74142035|dbj|BAE41080.1| unnamed protein product [Mus musculus] Length = 1014 Score = 45.2 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Query: 634 PSIGRHEKNVSSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSR 683 P+ + N K+ T G L + + +A+ + +LG ++ ++ Sbjct: 378 PTAVNSSAPADKPLSNMKI-LTLGKLSQ-NKDEAKAVIEKLGGKLTGSANK 426 >gi|20806109|ref|NP_031441.2| poly [ADP-ribose] polymerase 1 [Mus musculus] gi|15080598|gb|AAH12041.1| Poly (ADP-ribose) polymerase family, member 1 [Mus musculus] gi|26326859|dbj|BAC27173.1| unnamed protein product [Mus musculus] gi|26353740|dbj|BAC40500.1| unnamed protein product [Mus musculus] gi|148681205|gb|EDL13152.1| poly (ADP-ribose) polymerase family, member 1 [Mus musculus] Length = 1014 Score = 45.2 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Query: 634 PSIGRHEKNVSSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSR 683 P+ + N K+ T G L + + +A+ + +LG ++ ++ Sbjct: 378 PTAVNSSAPADKPLSNMKI-LTLGKLSQ-NKDEAKAVIEKLGGKLTGSANK 426 >gi|74198526|dbj|BAE39743.1| unnamed protein product [Mus musculus] Length = 1014 Score = 45.2 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Query: 634 PSIGRHEKNVSSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSR 683 P+ + N K+ T G L + + +A+ + +LG ++ ++ Sbjct: 378 PTAVNSSAPADKPLSNMKI-LTLGKLSQ-NKDEAKAVIEKLGGKLTGSANK 426 >gi|74141622|dbj|BAE38574.1| unnamed protein product [Mus musculus] Length = 1014 Score = 45.2 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Query: 634 PSIGRHEKNVSSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSR 683 P+ + N K+ T G L + + +A+ + +LG ++ ++ Sbjct: 378 PTAVNSSAPADKPLSNMKI-LTLGKLSQ-NKDEAKAVIEKLGGKLTGSANK 426 >gi|74214619|dbj|BAE31150.1| unnamed protein product [Mus musculus] Length = 973 Score = 45.2 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Query: 634 PSIGRHEKNVSSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSR 683 P+ + N K+ T G L + + +A+ + +LG ++ ++ Sbjct: 378 PTAVNSSAPADKPLSNMKI-LTLGKLSQ-NKDEAKAVIEKLGGKLTGSANK 426 >gi|312219647|emb|CBX99590.1| hypothetical protein [Leptosphaeria maculans] Length = 1667 Score = 45.2 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 8/80 (10%) Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN----PGSKLEKAQQLGVKIMN 710 +G + Q + LGA V+ ++ T ++I D K++ A+ + I++ Sbjct: 25 SGKFAGTTQAAVQARIKTLGATVAPSVTADTTLLIATDKDFESNSVKVKAARAHHIPIVS 84 Query: 711 EEQFLFLLQQYNTTLRIHDD 730 L L++ +T D+ Sbjct: 85 ----LSWLEECESTDSKVDE 100 >gi|227877650|ref|ZP_03995697.1| DNA polymerase [Lactobacillus crispatus JV-V01] gi|256850746|ref|ZP_05556169.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] gi|227862746|gb|EEJ70218.1| DNA polymerase [Lactobacillus crispatus JV-V01] gi|256712459|gb|EEU27457.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] Length = 318 Score = 45.2 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 23/93 (24%) Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-----------N 693 + ++NK +V +G + + +A + + +G V + T+ +I+GD N Sbjct: 230 NPVQNKNIVLSGNI-HMNEAEAGKMINNMGGQVDNSVLATTNYLIMGDQDFFRKDNQDLN 288 Query: 694 PGSKLEKAQQL-----GVKIMNEEQFLFLLQQY 721 A+ L +K +E FL +L + Sbjct: 289 A------ARDLIKNGAKIKRFSETFFLSMLDDW 315 >gi|57241980|ref|ZP_00369920.1| competence protein ComEA [Campylobacter upsaliensis RM3195] gi|57017172|gb|EAL53953.1| competence protein ComEA [Campylobacter upsaliensis RM3195] Length = 79 Score = 45.2 bits (105), Expect = 0.040, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 1/76 (1%) Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 K + A + + N L + +G+ A+AI+++ + +N ++E L K Sbjct: 3 KIFFLMFALASFLFAAVNLNTATLEELKSLKGIGETKAKAILDY-RKEQNFTSIEELKKV 61 Query: 632 VSPSIGRHEKNVSSEI 647 E+ S + Sbjct: 62 KGIGDKTFEEIKDSIV 77 >gi|256844192|ref|ZP_05549679.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN] gi|256614097|gb|EEU19299.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN] Length = 318 Score = 45.2 bits (105), Expect = 0.041, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 23/93 (24%) Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-----------N 693 + ++NK +V +G + + +A + + +G V + T+ +I+GD N Sbjct: 230 NPVQNKNIVLSGNI-HMNEAEAGKMINNMGGQVDNSVLATTNYLIMGDQDFFRKDNQDLN 288 Query: 694 PGSKLEKAQQL-----GVKIMNEEQFLFLLQQY 721 A+ L +K +E FL +L + Sbjct: 289 A------ARDLIKNGAKIKRFSETFFLSMLDDW 315 >gi|295693537|ref|YP_003602147.1| DNA polymerase iii [Lactobacillus crispatus ST1] gi|295031643|emb|CBL51122.1| DNA polymerase III [Lactobacillus crispatus ST1] Length = 318 Score = 45.2 bits (105), Expect = 0.045, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 23/93 (24%) Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-----------N 693 + ++NK +V +G + + +A + + +G V + T+ +I+GD N Sbjct: 230 NPVQNKNIVLSGNI-HMNEAEAGKMINNMGGQVDNSVLATTNYLIMGDQDFFRKDNQDLN 288 Query: 694 PGSKLEKAQQL-----GVKIMNEEQFLFLLQQY 721 A+ L +K +E FL +L + Sbjct: 289 A------ARDLIKNGAKIKRFSETFFLSMLDDW 315 >gi|317152159|ref|YP_004120207.1| hypothetical protein Daes_0439 [Desulfovibrio aespoeensis Aspo-2] gi|316942410|gb|ADU61461.1| hypothetical protein Daes_0439 [Desulfovibrio aespoeensis Aspo-2] Length = 120 Score = 45.2 bits (105), Expect = 0.045, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 9/69 (13%) Query: 652 LVFTGTLQKIQRHKAQEYVTQ----LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGV 706 + FTG R K + + + G +V + ++ + G PG +K+EKA+ GV Sbjct: 48 ICFTG----FGRGKEKAMLQEIARMNGYIVRSDVTNGLTFLCCGPEPGPAKIEKAEFRGV 103 Query: 707 KIMNEEQFL 715 ++++ E FL Sbjct: 104 EMISLESFL 112 >gi|66800895|ref|XP_629373.1| hypothetical protein DDB_G0292820 [Dictyostelium discoideum AX4] gi|26189990|emb|CAD58666.1| (ADP-ribosyl)transferase [Dictyostelium discoideum] gi|60462759|gb|EAL60959.1| hypothetical protein DDB_G0292820 [Dictyostelium discoideum AX4] Length = 700 Score = 45.2 bits (105), Expect = 0.046, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 13/102 (12%) Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII--VGD--NPGS 696 K ++ + F+GT + + + + V GA S + K ++ V D G+ Sbjct: 28 KPLTEIFDGIVFCFSGTFS-VTQTELTKKVEGCGASTSKTCTAKVTHLVSTVDDFKKNGT 86 Query: 697 KLEKAQQLGVKIMNEEQFL-------FLLQQYNTTLRIHDDD 731 + KA + G+ I+ E F+ L++ + +L +DD Sbjct: 87 AVSKALKSGIPIVTE-GFITKSIEASKKLEEKDYSLSSSNDD 127 >gi|262047863|ref|ZP_06020812.1| DNA polymerase [Lactobacillus crispatus MV-3A-US] gi|312976690|ref|ZP_07788439.1| DNA polymerase III [Lactobacillus crispatus CTV-05] gi|260571856|gb|EEX28428.1| DNA polymerase [Lactobacillus crispatus MV-3A-US] gi|310896018|gb|EFQ45083.1| DNA polymerase III [Lactobacillus crispatus CTV-05] Length = 318 Score = 44.8 bits (104), Expect = 0.047, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 23/93 (24%) Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-----------N 693 + ++NK +V +G + + +A + + +G V + T+ +I+GD N Sbjct: 230 NPVQNKNIVLSGNI-HMNEAEAGKMINNMGGQVDNSVLATTNYLIMGDQDFFRKDNQDLN 288 Query: 694 PGSKLEKAQQL-----GVKIMNEEQFLFLLQQY 721 A+ L +K +E FL +L + Sbjct: 289 A------ARDLIKNGAKIKRFSETFFLSMLDDW 315 >gi|169841229|ref|ZP_02874342.1| hypothetical protein cdivTM_29018 [candidate division TM7 single-cell isolate TM7a] Length = 32 Score = 44.8 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 3/33 (9%) Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 P+L + P ++G ++ KV H Sbjct: 3 NPELITI---DSPTQRVGNKLLDGFQKVRHQRR 32 >gi|74197055|dbj|BAE35080.1| unnamed protein product [Mus musculus] Length = 1014 Score = 44.8 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Query: 634 PSIGRHEKNVSSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSR 683 P+ + N K+ T G L + + +A+ + +LG ++ ++ Sbjct: 378 PTTVNSSAPADKPLSNMKI-LTLGKLSQ-NKDEAKAVIEKLGGKLTGSANK 426 >gi|296230268|ref|XP_002760624.1| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 1 [Callithrix jacchus] Length = 1013 Score = 44.8 bits (104), Expect = 0.049, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 41/91 (45%), Gaps = 17/91 (18%) Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRKT 685 + + + N K++ TL K+ R + + + +LG ++ +S K Sbjct: 377 PAAVNSASAGKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTKK 433 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 ++ + K+E+ ++ V++++E+ FL Sbjct: 434 EV----EKMNKKMEEVKEANVRVVSED-FLQ 459 >gi|281346595|gb|EFB22179.1| hypothetical protein PANDA_015010 [Ailuropoda melanoleuca] Length = 284 Score = 44.8 bits (104), Expect = 0.050, Method: Composition-based stats. Identities = 19/260 (7%), Positives = 41/260 (15%), Gaps = 11/260 (4%) Query: 229 PTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM 288 + + + + R H + Y Sbjct: 4 YIHTCVHTCIHAYTRACMHTCIHTYMCTYIHAYIHICVHACMHTRIHACIHAYIHAYTHT 63 Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTR-LLDIDIQIG 347 + Y A + +M + A + + I Sbjct: 64 YTRIHACVQTCVH-TYMHAYTHTHIHTYMHAHTHTYMPTCIHTYIHAYMHAYIHVHIHTY 122 Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407 + A + T MR V + Sbjct: 123 THTCIHACVHTYTRTYICACMHTYT---------HACIHTCMRTYVHTCVYACIHTYIHA 173 Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467 + + + H + C + T H C + Sbjct: 174 YIHTYMRTYMRTYMHTHTCMHTHVRTCAHTCAHTCMRTCIHTYMHTCIHACMHAYMHAYM 233 Query: 468 QLERLKHFVSRDAFNIEGLG 487 H + + Sbjct: 234 HAHTCMHTCAHTYTHTYICA 253 Score = 42.9 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 28/281 (9%), Positives = 49/281 (17%), Gaps = 15/281 (5%) Query: 211 KPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN 270 +A R + T I Y++ VH T Y Sbjct: 12 CIHAYTRACMHTCIHTYMCTYIHAYIHICVHACMHTRIHACIHAYIHAYTHTYTRIHACV 71 Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 H + T Y + + Sbjct: 72 QTCVHTYMHAYTHTHIHTYMHAHTHTYM---PTCIHTYIHAYMHAYIHVHIHTYTHTCIH 128 Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE------DYIKGLDA 384 A TR T V+ + +H Y++ Sbjct: 129 ACVHTYTRTYICACMHTYTHACIHTCMRTYVHTCVYACIHTYIHAYIHTYMRTYMRTYMH 188 Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444 + M + + I H + C + Sbjct: 189 THTCMHTHVRTCAHTCAHTCMRTCIHTYMHTCIHACMHAYMHAYMHAHTCMHTCAHTY-- 246 Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 T + A C C+ H + + Sbjct: 247 ----THTYICACMCACIHTCAHTYTHAYMHAYTHTYTHTYM 283 >gi|296230270|ref|XP_002760625.1| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 2 [Callithrix jacchus] Length = 992 Score = 44.8 bits (104), Expect = 0.052, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 41/91 (45%), Gaps = 17/91 (18%) Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRKT 685 + + + N K++ TL K+ R + + + +LG ++ +S K Sbjct: 356 PAAVNSASAGKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTKK 412 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 ++ + K+E+ ++ V++++E+ FL Sbjct: 413 EV----EKMNKKMEEVKEANVRVVSED-FLQ 438 >gi|319761963|ref|YP_004125900.1| hypothetical protein Alide_1251 [Alicycliphilus denitrificans BC] gi|317116524|gb|ADU99012.1| hypothetical protein Alide_1251 [Alicycliphilus denitrificans BC] Length = 236 Score = 44.8 bits (104), Expect = 0.053, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 6/64 (9%) Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK-LEKAQQLGVKIMNEEQF 714 G L + + G + +S D ++ + G K L +A LG+ +++E+ F Sbjct: 178 GKL-----DELEGLAAAAGWQIRWTISPTVDYVVRNGSAGKKQLAEADNLGIDVIDEDTF 232 Query: 715 LFLL 718 LL Sbjct: 233 RALL 236 >gi|304373271|ref|YP_003856480.1| DNA polymerase I [Mycoplasma hyorhinis HUB-1] gi|304309462|gb|ADM21942.1| DNA polymerase I [Mycoplasma hyorhinis HUB-1] gi|330723856|gb|AEC46226.1| 5'-3' exonuclease [Mycoplasma hyorhinis MCLD] Length = 296 Score = 44.8 bits (104), Expect = 0.053, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 571 AKYYLSYQNFA-QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI-CAVEAL 628 A + N ++I + A + D ++ VP +G A++++ + N NI ++ L Sbjct: 168 ADNFFELHNLLPKQIPDFKALSGDSSDNIKGVPGIGPKTAKSLISQFDNIENILANLDQL 227 Query: 629 LKEVSPSIGRHEKNV 643 ++ + +++N+ Sbjct: 228 PSKMKQKLIENKENI 242 >gi|302675044|ref|XP_003027206.1| hypothetical protein SCHCODRAFT_113840 [Schizophyllum commune H4-8] gi|300100892|gb|EFI92303.1| hypothetical protein SCHCODRAFT_113840 [Schizophyllum commune H4-8] Length = 1033 Score = 44.8 bits (104), Expect = 0.053, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 TGTL K+ + T+LGA + + K +I + G+K A + Sbjct: 8 PFAGMVFCATGTLDKMS---LFKKATELGAKSTHAFTDKVTHLIASGHGGAKYNCALERR 64 Query: 706 VKIM 709 + I+ Sbjct: 65 IPIL 68 >gi|227889381|ref|ZP_04007186.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus johnsonii ATCC 33200] gi|227850183|gb|EEJ60269.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus johnsonii ATCC 33200] Length = 320 Score = 44.8 bits (104), Expect = 0.059, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 27/124 (21%) Query: 616 YQNPRN---ICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTL--QKIQRHKAQEY 669 ++ V+ L L P I + + S +K +V G L + Sbjct: 199 FRQEHMLRAQEMVKTLDLTSEWPEIVKQSQAFRSPFAHKNVVIAGDLDVDDY---ELANA 255 Query: 670 VTQLGAVVSAILSRKTDIIIVGD---------NPGSKLEKAQQL-----GVKIMNEEQFL 715 V LG + + + TD ++VGD L KA+ L ++I +E+ FL Sbjct: 256 VKNLGGFIRDEVGQDTDYLLVGDHDFFRTDIVE----LNKARALKKQGQNIRIWSEQFFL 311 Query: 716 FLLQ 719 +L Sbjct: 312 NVLD 315 >gi|126179364|ref|YP_001047329.1| Hef nuclease [Methanoculleus marisnigri JR1] gi|125862158|gb|ABN57347.1| helicase domain protein [Methanoculleus marisnigri JR1] Length = 751 Score = 44.4 bits (103), Expect = 0.065, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 10/56 (17%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +VG + AR L +++ S + + L V +G+ A+AI + Sbjct: 699 FPNVGLKSARLLLEHFGSLKAIVDA----------EPEELAAVHGIGEKTARAIWD 744 >gi|170031028|ref|XP_001843389.1| draper [Culex quinquefasciatus] gi|167868869|gb|EDS32252.1| draper [Culex quinquefasciatus] Length = 1091 Score = 44.4 bits (103), Expect = 0.065, Method: Composition-based stats. Identities = 34/340 (10%), Positives = 67/340 (19%), Gaps = 26/340 (7%) Query: 157 GHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANP 216 G +G D I + +V +K + G A Sbjct: 346 GWTGADCGMRICPDDRYGDGC------TKKCECDVGNTKMCHPWTGKCLCEPGWSSAACD 399 Query: 217 RNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQAN 276 R + + + N + G + + +C + Sbjct: 400 RP-CPFLKYGQDCSIHCNCKNNSPCNHINGTCNCIAGFKGEICEEQCDNGTYGQNCSERC 458 Query: 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAS 336 + E + D K + + + + Sbjct: 459 ECQNGATCAPETGQCFCAPGWQGIRCDRPCDTHRYGKDCAQSCNCTNGGVCNPVNGQCTC 518 Query: 337 --TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRD 394 + Q +G + N N K + + Sbjct: 519 PAGWSGEKCEQKCESGRFGQNCS----QSCDCHLENTLACNATTGKCICKADWG-----G 569 Query: 395 IRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454 +R R + GE +V N P + C + D G Sbjct: 570 VRCESRCQMGLYGESCSEVCACHNN---SSCDPITGECICSRGWTGANCDEPCPDGFFG- 625 Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAF---NIEGLGKQQL 491 H C + H + + I + Sbjct: 626 -HGCKERCPGTMHGNTTCNHITGKYSCRPGYIGTTCEHPC 664 >gi|296225177|ref|XP_002758379.1| PREDICTED: laminin subunit beta-2 [Callithrix jacchus] Length = 1798 Score = 44.4 bits (103), Expect = 0.068, Method: Composition-based stats. Identities = 40/493 (8%), Positives = 75/493 (15%), Gaps = 66/493 (13%) Query: 157 GHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN--------DEMIAV 208 G G C E K + Sbjct: 807 GVVGRGCDVCAPGYYGFGPTGCQACQCSHEGALSSLCEKTSGQCPCRTGAFGLRCDRCQR 866 Query: 209 GRKPYANPRNAAS------------GILRRLNPTDITRYLNFF---------VHGLGKTS 247 G+ + + R L + T +G Sbjct: 867 GQWGFPSCRPCVCNGHADECDTHTGACLGCRDHTGGEHCERCIAGFHGDPRLPYGGQCRP 926 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE----------MKSIRSTLPY 297 +G + + G E + Sbjct: 927 CPCPEGPGNQRHFATSCHRDEFSQQIVCHCRAGYTGLRCEACAPGHFGDPSRPGGQCQLC 986 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 + G + +D + G+ R Q Sbjct: 987 ECSGNIDPMDPDACDPHTGQCLRC-LHHTEGPQCAHCKPGFYGQAARQSCHR-------- 1037 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRD---IRVGDRVLVKRAGEVIPKVV 414 N+ G ++ + + + R +G Sbjct: 1038 -CTCNLLGTNPQQCPSPDQCHCDPSSGQCPCLPNVQGPSCNRCAPNFWNLTSGHGCQPCA 1096 Query: 415 DIIVNERHPDAQPFSFPSFCPIC-----QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 R P F+ C S G A C + Q Sbjct: 1097 CHPSRARGPTCNEFTGQCHCHAGFGGRTCSECQELHWGDPGLQCRACDCDSHGIDTPQCH 1156 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529 H R + + + Sbjct: 1157 RSTGHCSCRPGVSGVRCDQ------CARGFSGIFPACYPCHACFGDWDRVVQDLAARTRR 1210 Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 + + S LGI + A S + + Sbjct: 1211 LEQRAQELQQTGVLGAFESSFWHMQEKLGIVQGIVGARNTSAA---STAQLVEATEELRR 1267 Query: 590 HNNDDWLSLIRVP 602 + L ++ Sbjct: 1268 EIGEATEHLTQLE 1280 >gi|58337906|ref|YP_194491.1| DNA polymerase III [Lactobacillus acidophilus NCFM] gi|227902927|ref|ZP_04020732.1| DNA polymerase III [Lactobacillus acidophilus ATCC 4796] gi|58255223|gb|AAV43460.1| DNA polymerase III [Lactobacillus acidophilus NCFM] gi|227869343|gb|EEJ76764.1| DNA polymerase III [Lactobacillus acidophilus ATCC 4796] Length = 318 Score = 44.4 bits (103), Expect = 0.068, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 45/124 (36%), Gaps = 37/124 (29%) Query: 626 EALLKEVSPSIGRHEKNVS----------SEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + LL+ I + + ++NKK+V +G + + A + + +G Sbjct: 201 DELLENARNKIKNVDLTGDEVDYYQLGYRNPVQNKKIVLSGHI-HMDNEDAGKMIENMGG 259 Query: 676 VVSAILSRKTDIIIVGD------------------NPGSKLEKAQQLGVKIMNEEQFLFL 717 + T+ +I+GD GSK+++ ++E FL + Sbjct: 260 KNVDKVDPMTNYLIMGDHDFFRKDNEDLNTARDFIKNGSKIKR--------LSESFFLGM 311 Query: 718 LQQY 721 L + Sbjct: 312 LDDW 315 >gi|291569735|dbj|BAI92007.1| excinuclease ABC subunit C [Arthrospira platensis NIES-39] Length = 624 Score = 44.4 bits (103), Expect = 0.069, Method: Composition-based stats. Identities = 15/116 (12%), Positives = 33/116 (28%), Gaps = 17/116 (14%) Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF--IFSLGIRH 561 I +P + L + ++ L + + + + I LG Sbjct: 521 IFVPGESQPLTTNPEQPGVELLRRLRDEAHRFAVSFHRNQRSKRMKRSHLDDIPGLGHHR 580 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 + L ++ S L V +G+ +AQ I +++ Sbjct: 581 Q-----KLLLGHFRSIDYIRIATPT----------QLAEVNGIGEKLAQQIYDYFH 621 >gi|284053794|ref|ZP_06384004.1| excinuclease ABC subunit C [Arthrospira platensis str. Paraca] Length = 624 Score = 44.4 bits (103), Expect = 0.069, Method: Composition-based stats. Identities = 15/116 (12%), Positives = 33/116 (28%), Gaps = 17/116 (14%) Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF--IFSLGIRH 561 I +P + L + ++ L + + + + I LG Sbjct: 521 IFVPGESQPLTTNPEQPGVELLRRLRDEAHRFAVSFHRNQRSKRMKRSHLDDIPGLGHHR 580 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 + L ++ S L V +G+ +AQ I +++ Sbjct: 581 Q-----KLLLGHFRSIDYIRIATPT----------QLAEVNGIGEKLAQQIYDYFH 621 >gi|329667930|gb|AEB93878.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii DPC 6026] Length = 320 Score = 44.4 bits (103), Expect = 0.073, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 27/124 (21%) Query: 616 YQNPRN---ICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTL--QKIQRHKAQEY 669 ++ V+ L L P I + + S +K +V G L + + Sbjct: 199 FRQEHMLRAQEMVKTLDLTSEWPEIVKQSQAFRSPFAHKNVVIAGDLDVDEY---ELANA 255 Query: 670 VTQLGAVVSAILSRKTDIIIVGD---------NPGSKLEKAQQL-----GVKIMNEEQFL 715 V LG + + + TD ++VGD L KA+ L ++I +E+ FL Sbjct: 256 VKNLGGFIRDEVGQDTDYLLVGDHDFFRTDIVE----LNKARALKKQGQNIRIWSEQFFL 311 Query: 716 FLLQ 719 +L Sbjct: 312 NVLD 315 >gi|145225728|ref|YP_001136406.1| AAA ATPase [Mycobacterium gilvum PYR-GCK] gi|145218214|gb|ABP47618.1| AAA ATPase [Mycobacterium gilvum PYR-GCK] Length = 779 Score = 44.4 bits (103), Expect = 0.073, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 50/139 (35%), Gaps = 30/139 (21%) Query: 610 QAIVEFYQNPRNI-----CAVEAL---LKEVSPSIGRHEK-----NVSSEIE-NKKLVFT 655 Q++ + + N + L + + I + +V + ++ FT Sbjct: 644 QSVADQLRVAANRVQLTDEVLSRLHAAEELLGVEILSGTELLDRPDVDGILAPGARICFT 703 Query: 656 GT--------LQKIQRHKAQEYVTQLGAVVSAILSR-KTDIII---VGDNPGSKLEKAQQ 703 GT ++ R + + T G V +++ + D+++ G G K KA + Sbjct: 704 GTAQDPDGRVVE---RDEMERLATAAGLVPVKSVTKTRCDVLVTAEAGTQSG-KARKALE 759 Query: 704 LGVKIMNEEQFLFLLQQYN 722 G ++ + F L + Sbjct: 760 YGKPVLCADDFFAWLAAHG 778 >gi|296809265|ref|XP_002844971.1| WGR domain containing protein [Arthroderma otae CBS 113480] gi|238844454|gb|EEQ34116.1| WGR domain containing protein [Arthroderma otae CBS 113480] Length = 724 Score = 44.4 bits (103), Expect = 0.073, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 9/90 (10%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---PGSKLEKAQ 702 + ++ +V +G+ + + V LG SA ++ +I G+K ++A Sbjct: 4 PLVDQVVVVSGSFRDYNHDTIKYIVESLGGSFSAKVNDDCTHLITTKAAHPAGTKNKQAI 63 Query: 703 QLG--VKIMNEEQFLFLLQQYNTTLRIHDD 730 LG +KI++ L L ++ DD Sbjct: 64 ALGNDIKIVS----LEWLTDSRDKGQLMDD 89 >gi|315638295|ref|ZP_07893476.1| competence protein ComEA [Campylobacter upsaliensis JV21] gi|315481642|gb|EFU72265.1| competence protein ComEA [Campylobacter upsaliensis JV21] Length = 79 Score = 44.4 bits (103), Expect = 0.074, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 1/76 (1%) Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 K + A + + N L + +G+ A+AI+++ + +N ++E L K Sbjct: 3 KIFFLMFALASFLFAAVNLNTATLEELKSLKGIGETKARAILDY-RKEQNFTSIEELKKV 61 Query: 632 VSPSIGRHEKNVSSEI 647 E+ S + Sbjct: 62 KGIGEKTFEELKDSIV 77 >gi|298675948|ref|YP_003727698.1| excinuclease ABC subunit C [Methanohalobium evestigatum Z-7303] gi|298288936|gb|ADI74902.1| excinuclease ABC, C subunit [Methanohalobium evestigatum Z-7303] Length = 603 Score = 44.4 bits (103), Expect = 0.074, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 10/66 (15%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI +G R+L +++ + N L +V + + +AQ IV++++ Sbjct: 548 GIPGIGESKKRALLEHFGTVDNIINA----------SIKDLKQVEGISNNLAQKIVDYFE 597 Query: 618 NPRNIC 623 N N Sbjct: 598 NDDNKK 603 >gi|297808239|ref|XP_002872003.1| poly polymerase 3 (PARP-3) ADP-ribosyltransferase 3 [Arabidopsis lyrata subsp. lyrata] gi|297317840|gb|EFH48262.1| poly polymerase 3 (PARP-3) ADP-ribosyltransferase 3 [Arabidopsis lyrata subsp. lyrata] Length = 815 Score = 44.4 bits (103), Expect = 0.076, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 44/110 (40%), Gaps = 14/110 (12%) Query: 624 AVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVS 678 A+ L+K+ R ++ + S + G ++ R ++ + + G VS Sbjct: 162 AISDLIKKHQDPKSRPKRELGSADKPFAGMMISLMG---RLTRTHQYWKKKIERNGGKVS 218 Query: 679 AILSRKTDIIIVGD-----NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 + ++V SK+ +A + G+ +++E + ++++ Sbjct: 219 NTVQG-VTCLVVSPAERERGGTSKMVEAMEQGLPVVSEAWLIDSVEKHEA 267 >gi|293380779|ref|ZP_06626825.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Lactobacillus crispatus 214-1] gi|290922665|gb|EFD99621.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Lactobacillus crispatus 214-1] Length = 318 Score = 44.0 bits (102), Expect = 0.080, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 23/93 (24%) Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-----------N 693 + ++NK +V +G + + +A + + +G V + T+ +I+GD N Sbjct: 230 NPVQNKNIVLSGNI-HMNEAEAGKMINNMGGQVDDSVLATTNYLIMGDHDFFRKDNQDLN 288 Query: 694 PGSKLEKAQQL-----GVKIMNEEQFLFLLQQY 721 A+ L +K +E FL +L + Sbjct: 289 A------ARDLIKNGAKIKRFSETFFLSMLDDW 315 >gi|218672221|ref|ZP_03521890.1| hypothetical protein RetlG_11537 [Rhizobium etli GR56] Length = 96 Score = 44.0 bits (102), Expect = 0.080, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 15/84 (17%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSK 697 E + FTGT QR + VT+ GA + L+++T+++++G + G+K Sbjct: 12 FEGRTYCFTGTFNYGQRKHCEAAVTERGAS-AGSLTQRTNVLVIGMYATDSWKHSSFGNK 70 Query: 698 LEKAQQ--LG---VKIMNEEQFLF 716 + A + L + I++EE ++ Sbjct: 71 IMNAVEYRLKGFPISIVSEEHWVR 94 >gi|229470526|sp|B4RTT9|RUVA_ALTMD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA Length = 206 Score = 44.0 bits (102), Expect = 0.082, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 14/97 (14%) Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 + + N+D +L +P +G A+ +V + + L K Sbjct: 93 MSAGQFLASVQNEDVSALASLPGIGKKTAERLV--------VELKDRLAKFGKAQSIAVP 144 Query: 641 KNVSSEIENKKLVFTGTLQ-KIQRHKAQEYVTQLGAV 676 + +V + R +AQ + LG Sbjct: 145 PPSGDLLSPNTIV-----EVNDAREEAQSALIALGYK 176 >gi|297627178|ref|YP_003688941.1| ATPase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922943|emb|CBL57525.1| ATPase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 814 Score = 44.0 bits (102), Expect = 0.084, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 14/109 (12%) Query: 622 ICAVEALLKEVSPSIG-----RHEKNVSSEIE-NKKLVFTGTL-----QKIQRHKAQEYV 670 + +E L ++ +I R + ++ FTG++ I R ++ Sbjct: 697 LAELEQLERQWGVTIITDAMRRPADSAEQVFVPGARVCFTGSVIDARGTTISRSDMEQLA 756 Query: 671 TQLGAVVSAILSR-KTDIIIVGDNPG--SKLEKAQQLGVKIMNEEQFLF 716 + V ++R + D+++ D K KA LG +++ +FL Sbjct: 757 AEHELVAVPSVTRTRCDVLVAADTASRSGKARKALDLGKPVISAAEFLA 805 >gi|323358024|ref|YP_004224420.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum StLB037] gi|323274395|dbj|BAJ74540.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum StLB037] Length = 405 Score = 44.0 bits (102), Expect = 0.089, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 7/74 (9%) Query: 649 NKKLVFTGTLQKIQRHKAQ--EYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQL 704 +V TG +R +A +T+ G + + +K +++ D + K +A+ Sbjct: 329 GDTVVITG---DTRRDRAAWFAILTERGLIPKDSMVKKAKVLVAADPDSMSGKARQARAW 385 Query: 705 GVKIMNEEQFLFLL 718 G+ I+ EE LL Sbjct: 386 GIPIVTEEGLERLL 399 >gi|294670237|ref|ZP_06735130.1| DNA topoisomerase [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307974|gb|EFE49217.1| DNA topoisomerase [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 150 Score = 44.0 bits (102), Expect = 0.089, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 20/42 (47%) Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 N L +P +G AQAIV++ + N +VE L K Sbjct: 63 NINTATVEELKALPGIGPAKAQAIVDYRKENGNFKSVEDLKK 104 >gi|115531716|ref|YP_784242.1| NAD+-dependent DNA ligase [Crocodilepox virus] gi|115521069|gb|ABJ08943.1| NAD+-dependent DNA ligase [Crocodilepox virus] Length = 360 Score = 44.0 bits (102), Expect = 0.093, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 10/74 (13%) Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162 N +++ ++ F + K+DG + + G RG G+D Sbjct: 172 NEQEVEDWL----------SGTDCDFIVTHKLDGVSVVLVVGTGGQRRLYARGTVSHGQD 221 Query: 163 VSACIRAIPTIPRV 176 ++ + ++ +PR Sbjct: 222 ITHLLPSVTNLPRF 235 >gi|327439585|dbj|BAK15950.1| DNA uptake protein [Solibacillus silvestris StLB046] Length = 215 Score = 44.0 bits (102), Expect = 0.095, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 35/103 (33%) Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 IN + + E I+ I E+ + + + + + N I N L ++ Sbjct: 108 INHAQKLHDEMVIYIPKIGEEPEEVMEQIIQASPATGSGSGSSNGKININKASEGELTQL 167 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 P +G A AI++ N +E L E+ Sbjct: 168 PGIGPAKAAAIIQHRSEQGNFQIIEDLKNVTGIGDKTFEQLKD 210 >gi|294671442|ref|ZP_06736289.1| hypothetical protein NEIELOOT_03152 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291306861|gb|EFE48104.1| hypothetical protein NEIELOOT_03152 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 109 Score = 44.0 bits (102), Expect = 0.095, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 20/42 (47%) Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 N L +P +G AQAIV++ + N +VE L K Sbjct: 22 NINTATVEELKALPGIGPAKAQAIVDYRKENGNFKSVEDLKK 63 >gi|281205805|gb|EFA79994.1| hypothetical protein PPL_06815 [Polysphondylium pallidum PN500] Length = 360 Score = 44.0 bits (102), Expect = 0.095, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 30/44 (68%), Gaps = 2/44 (4%) Query: 673 LGAVVSAILSRKTDIIIVGDNP-GSKLEKAQQLGVKIMNEEQFL 715 LG V+ +++KT I I DN S++EKA++L + ++ +++F+ Sbjct: 33 LGGTVARSINKKTTIAICNDNSLTSEIEKAEKLDIPVV-KKEFI 75 >gi|159163816|pdb|2COK|A Chain A, Solution Structure Of Brct Domain Of Poly(Adp-Ribose) Polymerase-1 Length = 113 Score = 44.0 bits (102), Expect = 0.095, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 40/84 (47%), Gaps = 17/84 (20%) Query: 642 NVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRKTDIIIVGD 692 + + N K++ TL K+ R + + + +LG ++ +S K ++ + Sbjct: 6 SGDKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTKKEV----E 58 Query: 693 NPGSKLEKAQQLGVKIMNEEQFLF 716 K+E+ ++ +++++E+ FL Sbjct: 59 KMNKKMEEVKEANIRVVSED-FLQ 81 >gi|296119759|ref|ZP_06838313.1| hypothetical protein HMPREF0281_02275 [Corynebacterium ammoniagenes DSM 20306] gi|295966913|gb|EFG80184.1| hypothetical protein HMPREF0281_02275 [Corynebacterium ammoniagenes DSM 20306] Length = 467 Score = 44.0 bits (102), Expect = 0.096, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 16/118 (13%) Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + +A + ++ L+K + F+GTL+ I R + Sbjct: 167 EKVAAQL----NVDE--QVIDKLVKPGYAHHTLELNPGDR------VAFSGTLE-IPREE 213 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 T +V +S KT +++ D+ +K + A++L + ++ E +F +L + Sbjct: 214 WVHRATSAS-LVVEQVSDKTKVLVASNLDSDSAKAQTARRLNIPMVTESKFAKILGTH 270 >gi|168185645|ref|ZP_02620280.1| excinuclease ABC, C subunit [Clostridium botulinum C str. Eklund] gi|169296408|gb|EDS78541.1| excinuclease ABC, C subunit [Clostridium botulinum C str. Eklund] Length = 621 Score = 44.0 bits (102), Expect = 0.097, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 28/63 (44%), Gaps = 10/63 (15%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I +VG + + L + + S +N + + L+ + + A++I++++ Sbjct: 569 DIPNVGQKRRKELLQKFGSIENIKKA----------SYEELLDTDSINEKAAKSIIDYFN 618 Query: 618 NPR 620 N + Sbjct: 619 NDK 621 >gi|290989157|ref|XP_002677209.1| hypothetical protein NAEGRDRAFT_79764 [Naegleria gruberi] gi|284090815|gb|EFC44465.1| hypothetical protein NAEGRDRAFT_79764 [Naegleria gruberi] Length = 621 Score = 44.0 bits (102), Expect = 0.100, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 + +GTL K R + + + + G +A +++ +I Sbjct: 7 FNSLVFCISGTLSK-GRKEVENEIKKYGGKTAASITKAVTHLI 48 >gi|194227290|ref|XP_001491507.2| PREDICTED: similar to Poly [ADP-ribose] polymerase 1 (PARP-1) (ADPRT) (NAD(+) ADP-ribosyltransferase 1) (Poly[ADP-ribose] synthetase 1) [Equus caballus] Length = 999 Score = 44.0 bits (102), Expect = 0.10, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 5/42 (11%) Query: 644 SSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAILSR 683 + N K++ TL K+ R + + + +LG ++ S+ Sbjct: 372 DKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTTSK 410 >gi|11499994|ref|NP_071240.1| DNA repair protein, putative [Archaeoglobus fulgidus DSM 4304] gi|2650671|gb|AAB91244.1| DNA repair protein, putative [Archaeoglobus fulgidus DSM 4304] Length = 208 Score = 44.0 bits (102), Expect = 0.10, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 10/72 (13%) Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 ++ + I +G + A L Y+ S Q A L RV +G Sbjct: 147 KSHENPKIAMLTAIPGIGEKKAEKLLDYFGSIQRIANA----------SIAELKRVDGIG 196 Query: 606 DIIAQAIVEFYQ 617 + A+ I F++ Sbjct: 197 EKKAREIYRFFR 208 >gi|295425759|ref|ZP_06818444.1| DNA polymerase III [Lactobacillus amylolyticus DSM 11664] gi|295064567|gb|EFG55490.1| DNA polymerase III [Lactobacillus amylolyticus DSM 11664] Length = 318 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 19/89 (21%) Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---------NPG 695 + + NKK+V T L K+ A + + LG L+ +T+ +I+GD + Sbjct: 230 NPVNNKKIVLTDHL-KMNLEDANKMIDNLGGQAQGRLAMETNYLILGDHDFFSRDNND-- 286 Query: 696 SKLEKAQQLG-----VKIMNEEQFLFLLQ 719 L KAQ+L +K ++E FL +L Sbjct: 287 --LNKAQELNHEGADIKHLSESFFLNMLD 313 >gi|254166800|ref|ZP_04873654.1| ERCC4 domain protein [Aciduliprofundum boonei T469] gi|289596077|ref|YP_003482773.1| ERCC4 domain protein [Aciduliprofundum boonei T469] gi|197624410|gb|EDY36971.1| ERCC4 domain protein [Aciduliprofundum boonei T469] gi|289533864|gb|ADD08211.1| ERCC4 domain protein [Aciduliprofundum boonei T469] Length = 221 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 48/155 (30%), Gaps = 16/155 (10%) Query: 467 QQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA----DIFTLQRRQQTSTT 522 ++ L H D ++ G + + + I I D R Sbjct: 79 RRRALLIHGYMGDEISLSSFGWNHIMGAYMEIQYRYDIPIFHAEDDDALAEFFRILIKRE 138 Query: 523 KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582 G + + + + ++G +IA++L +++ S + A+ Sbjct: 139 TEGKNEGEFERKWMRIPPKRVMSDEE--WKIYALSSLPYIGEKIAKALLEHFGSIEKIAR 196 Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 + + L +V +GD A+ I + Sbjct: 197 A----------NIVELKKVEGIGDKKARQIYRIFH 221 >gi|302381054|ref|ZP_07269514.1| excinuclease ABC, C subunit [Finegoldia magna ACS-171-V-Col3] gi|302311101|gb|EFK93122.1| excinuclease ABC, C subunit [Finegoldia magna ACS-171-V-Col3] Length = 608 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 10/61 (16%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I +G + ++L K++ + + L V + + A+ IV++++ Sbjct: 558 NIALIGEKRKKALMKHFKTLDRIKKA----------SVEELCEVDGMNEKAAENIVDYFK 607 Query: 618 N 618 Sbjct: 608 Q 608 >gi|255536695|ref|YP_003097066.1| UDP-N-acetylmuramate--alanine ligase [Flavobacteriaceae bacterium 3519-10] gi|255342891|gb|ACU09004.1| UDP-N-acetylmuramate--alanine ligase [Flavobacteriaceae bacterium 3519-10] Length = 458 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 35/68 (51%), Gaps = 7/68 (10%) Query: 667 QEYVTQLGAVV----SAILSRKTDIIIVG---DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ + G + +S KTD+I+V ++ +++KA++LG+ I+ + L + Sbjct: 51 KDQLEAEGIKCHLQDGSGISEKTDLIVVSTAIEDTVFEVQKARELGIPIVKRSELLAAIA 110 Query: 720 QYNTTLRI 727 + T+ + Sbjct: 111 KSKKTIAV 118 >gi|302565330|ref|NP_001181397.1| laminin subunit gamma-1 [Macaca mulatta] Length = 1798 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 39/493 (7%), Positives = 76/493 (15%), Gaps = 66/493 (13%) Query: 157 GHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN--------DEMIAV 208 G G C E K + Sbjct: 807 GVVGRRCDLCAPGYYGFGPTGCQACQCSPEGALSSLCEKTSGQCPCRTGTFGLHCDRCQR 866 Query: 209 GRKPYANPRNAAS------------GILRRLNPTDITRYLNFF---------VHGLGKTS 247 G+ + + R L + T +G Sbjct: 867 GQWGFPSCRPCVCNGHADECDTHTGACLGCRDHTGGEHCERCIAGFHGDPQLPYGGQCRP 926 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE----------MKSIRSTLPY 297 +G + + G E + Sbjct: 927 CPCPEGPGSQRHFATSCHRDEYSQKIVCHCRAGYTGLRCEACAPGHFGDPSRPGGRCQLC 986 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 + G + +D + G+ R Q Sbjct: 987 ECSGNIDLMDPDACDPHTGQCLRC-LHHTEGPHCAHCKPGFHGQAARQSCHR-------- 1037 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI---RVGDRVLVKRAGEVIPKVV 414 N+ G ++ + + + +G Sbjct: 1038 -CTCNLLGTNPQQCPSPDQCHCDRSSGQCPCLPNVQGPSCDHCAPNFWNFTSGHGCHPCA 1096 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA-----AHRCTGGLACSAQQL 469 R P F+ +C + A A C + Q Sbjct: 1097 CHPRQARGPTCNEFTGQCYCRAGFGGRTCSECQELHWGDAGLQCRACDCDPRGTDTPQCH 1156 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529 H R + + F + Sbjct: 1157 RSTGHCSCRPGVSGVRCDQ------CARGFSGFFPACHPCHACFGDWDRVVQDLAARTRR 1210 Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 + + S LGI + A S + + Sbjct: 1211 LEQRAQELQQTGVLGAFESSFWHMQEKLGIVQGIVGARNTSAA---STAQLVEATEELRR 1267 Query: 590 HNNDDWLSLIRVP 602 + L ++ Sbjct: 1268 EIGEATEHLTQLE 1280 >gi|254292978|ref|YP_003059001.1| hypothetical protein Hbal_0602 [Hirschia baltica ATCC 49814] gi|254041509|gb|ACT58304.1| hypothetical protein Hbal_0602 [Hirschia baltica ATCC 49814] Length = 129 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Query: 665 KAQEYV--TQ--LGAVVSAILSRKTDIIIVGD-NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + +E + LG +V L++K D ++ G P SK+ A++ GV+I+ E +F Sbjct: 62 ELKEKLGDEAFALGFLVDNGLTKKLDFMVCGPTAPASKIRAAEKFGVEILMEFEFKEF-- 119 Query: 720 QYNTTLRIHD 729 Q L I + Sbjct: 120 QETGELPIRE 129 >gi|222641663|gb|EEE69795.1| hypothetical protein OsJ_29518 [Oryza sativa Japonica Group] Length = 558 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690 + TG L K R + +E ++G S L K ++V Sbjct: 51 DGPFAGLVICVTG-LSKEARTQVKEATERMGGEYSGSLHPKCTHLVV 96 >gi|218202217|gb|EEC84644.1| hypothetical protein OsI_31525 [Oryza sativa Indica Group] Length = 558 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690 + TG L K R + +E ++G S L K ++V Sbjct: 51 DGPFAGLVICVTG-LSKEARTQVKEATERMGGEYSGSLHPKCTHLVV 96 >gi|222480951|ref|YP_002567188.1| ERCC4 domain protein [Halorubrum lacusprofundi ATCC 49239] gi|222453853|gb|ACM58118.1| ERCC4 domain protein [Halorubrum lacusprofundi ATCC 49239] Length = 836 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 10/57 (17%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 I +G AR+L +++ + + L+ V VG + A+ I E Sbjct: 783 SIADIGPVTARTLLEHFGTVEAVMTAPE----------DDLLEVDGVGPVTAERIRE 829 >gi|119590191|gb|EAW69785.1| poly (ADP-ribose) polymerase family, member 1, isoform CRA_b [Homo sapiens] Length = 1008 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 39/80 (48%), Gaps = 17/80 (21%) Query: 646 EIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRKTDIIIVGDNPGS 696 + N K++ TL K+ R + + + +LG ++ +S K ++ + Sbjct: 387 PLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTKKEV----EKMNK 439 Query: 697 KLEKAQQLGVKIMNEEQFLF 716 K+E+ ++ +++++E+ FL Sbjct: 440 KMEEVKEANIRVVSED-FLQ 458 >gi|332993889|gb|AEF03944.1| Holliday junction DNA helicase motor protein [Alteromonas sp. SN2] Length = 206 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 14/102 (13%) Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635 + + + A N D +L+ +P +G A+ +V + + L K Sbjct: 88 TILSGMSAGQFLSAVQNADVSALVSLPGIGKKTAERLV--------VELKDRLAKFGKVQ 139 Query: 636 IGRHEKNVSSEIENKKLVFTGTLQ-KIQRHKAQEYVTQLGAV 676 + LV + R AQ + LG Sbjct: 140 SIAIPPPSGDLLNTNTLV-----EVNDTREDAQSALVALGYK 176 >gi|126306928|ref|XP_001368346.1| PREDICTED: similar to poly(ADP-ribose) synthetase [Monodelphis domestica] Length = 1011 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 44/102 (43%), Gaps = 17/102 (16%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684 P + N K++ TL K+ R + + + +LG ++ +S K Sbjct: 375 PPTVNSSAQPDKPLSNMKIL---TLGKLSRNKDEMKATIEELGGKLTGTANKASLCISTK 431 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 ++ + K+E+ ++ V++++E+ FL + +L+ Sbjct: 432 KEV----EKMNKKMEEVKEANVRVVSED-FLKDISASGKSLQ 468 >gi|225464980|ref|XP_002274597.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296084929|emb|CBI28338.3| unnamed protein product [Vitis vinifera] Length = 828 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 12/109 (11%), Positives = 35/109 (32%), Gaps = 14/109 (12%) Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ---KIQRHKAQEYVTQLGAVVSA 679 ++ ++ + R+ + +G L R + + G + Sbjct: 180 ELIKNHQEQGNF-PRRNLNPTGKPFTGMLICLSGRLSRTHHYWR----TKIEEHGGKDAN 234 Query: 680 ILSRKTDIIIVGD-----NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 + T ++V SK+ +A + G+ ++ E +++ Sbjct: 235 SVLGAT-CLVVSPAERERGGSSKVVEAMERGIPVVREAWLSDSIEKQEA 282 >gi|150021611|ref|YP_001306965.1| helix-hairpin-helix repeat-containing competence protein ComEA [Thermosipho melanesiensis BI429] gi|149794132|gb|ABR31580.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermosipho melanesiensis BI429] Length = 184 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 26/56 (46%) Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 S + + II N+ + L+ +P +G A++I+ + + +++ LL Sbjct: 33 KSGEKTRKYAEQIIDINSATFEQLVSLPGIGPTKAKSIINYREKVGEFLSIDDLLN 88 Score = 42.5 bits (98), Expect = 0.30, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 27/54 (50%) Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 I NN L+++P +G + AQ I+EF + N+ + E LLK EK Sbjct: 124 ININNASVEELMKLPGIGKVKAQEIIEFRKKFGNVQSFEDLLKVKGIGKKTLEK 177 >gi|25010472|ref|NP_734867.1| hypothetical protein gbs0399 [Streptococcus agalactiae NEM316] gi|25010784|ref|NP_735179.1| hypothetical protein gbs0729 [Streptococcus agalactiae NEM316] gi|25011033|ref|NP_735428.1| hypothetical protein gbs0980 [Streptococcus agalactiae NEM316] gi|23094825|emb|CAD46043.1| Unknown [Streptococcus agalactiae NEM316] gi|23095138|emb|CAD46373.1| unknown [Streptococcus agalactiae NEM316] gi|23095433|emb|CAD46639.1| Unknown [Streptococcus agalactiae NEM316] Length = 77 Score = 43.6 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 14/73 (19%) Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQQL---G--V 706 + R + ++ GA+V +S +T+I++ G D K E A G + Sbjct: 1 MTRREVIVFLENQGAIVQGYVSSQTEILLAGHKQLDLFEPDKRSRKYEAALSRIATGQAI 60 Query: 707 KIMNEEQFLFLLQ 719 I++EE F L++ Sbjct: 61 TILSEEAFFNLVK 73 >gi|297587656|ref|ZP_06946300.1| excision endonuclease subunit UvrC [Finegoldia magna ATCC 53516] gi|297574345|gb|EFH93065.1| excision endonuclease subunit UvrC [Finegoldia magna ATCC 53516] Length = 608 Score = 43.6 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 17/139 (12%), Positives = 42/139 (30%), Gaps = 15/139 (10%) Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTSTTKIENILG--FGDVSVTNLYD 540 + K+ LD F ++ + + + F T+ + Sbjct: 480 NIAKEVLDEFNLDIPILGLVKDDKHRTRGIIYENDEIRLKVNTPLYRLLFAIQEETHRFA 539 Query: 541 SINKRRNISLERFIFSL-GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 R+ L I+ +G + ++L K++ + + L Sbjct: 540 INYHRKLHEKNFKKSELDNIKLIGKKRKKALMKHFKTLDRIKKA----------SVEELC 589 Query: 600 RVPLVGDIIAQAIVEFYQN 618 V + + A+ IV +++ Sbjct: 590 EVDGMNEKAAENIVNYFKQ 608 >gi|327262609|ref|XP_003216116.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 3 [Anolis carolinensis] Length = 1010 Score = 43.6 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 +P I + + K++ G L K + + + + +LG V+A ++R Sbjct: 372 TPVIENSTTPADKPLNSMKILVLGKLSK-NKDEIKSAIEELGGKVTATVNR 421 >gi|302658328|ref|XP_003020869.1| poly(ADP)-ribose polymerase PARP, putative [Trichophyton verrucosum HKI 0517] gi|291184737|gb|EFE40251.1| poly(ADP)-ribose polymerase PARP, putative [Trichophyton verrucosum HKI 0517] Length = 752 Score = 43.6 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 12/78 (15%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE---- 699 S + + +V +G+ + + V QLG SA ++ ++ SK Sbjct: 2 SKPLAGQVVVVSGSFRAYNHETIKYIVEQLGGTFSATVTDACTHLV-----TSKAAHPAD 56 Query: 700 -KAQQLG--VKIMNEEQF 714 +A LG +KI++ + Sbjct: 57 QQAIALGNDIKIVSLDWL 74 >gi|158316676|ref|YP_001509184.1| DNA polymerase III subunit epsilon [Frankia sp. EAN1pec] gi|158112081|gb|ABW14278.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec] Length = 389 Score = 43.6 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 5/76 (6%) Query: 647 IENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG--SKLEKAQQ 703 ++ ++ F+G R + G V+ +SR+T +++ D G K+ A Sbjct: 289 VQGMRVAFSG--PTRTERGELVGRAVAAGLHVTETVSRRTSLLVTNDARGVTRKVRTAAL 346 Query: 704 LGVKIMNEEQFLFLLQ 719 L + EE FL LL Sbjct: 347 LNTPVRGEEDFLELLA 362 >gi|42519676|ref|NP_965606.1| hypothetical protein LJ0649 [Lactobacillus johnsonii NCC 533] gi|41583965|gb|AAS09572.1| hypothetical protein LJ_0649 [Lactobacillus johnsonii NCC 533] Length = 320 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 27/124 (21%) Query: 616 YQNPRN---ICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ--KIQRHKAQEY 669 ++ V+ L L P + + + S +K +V G L + + Sbjct: 199 FKQEHMLRAQEMVKTLDLTSEWPELVKQSQAFRSPFAHKNVVIAGDLDVDEY---ELANA 255 Query: 670 VTQLGAVVSAILSRKTDIIIVGD---------NPGSKLEKAQQL-----GVKIMNEEQFL 715 V LG + + + TD ++VGD L KA+ L ++I +E+ FL Sbjct: 256 VKNLGGFIRDEVGQDTDYLLVGDHDFFRTDIVE----LNKARALKKQGQNIRIWSEQFFL 311 Query: 716 FLLQ 719 +L Sbjct: 312 NVLD 315 >gi|327262607|ref|XP_003216115.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 2 [Anolis carolinensis] Length = 1009 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 +P I + + K++ G L K + + + + +LG V+A ++R Sbjct: 371 TPVIENSTTPADKPLNSMKILVLGKLSK-NKDEIKSAIEELGGKVTATVNR 420 >gi|327262605|ref|XP_003216114.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 1 [Anolis carolinensis] Length = 1006 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 +P I + + K++ G L K + + + + +LG V+A ++R Sbjct: 368 TPVIENSTTPADKPLNSMKILVLGKLSK-NKDEIKSAIEELGGKVTATVNR 417 >gi|241812099|ref|XP_002414597.1| laminin beta 1 chain, putative [Ixodes scapularis] gi|215508808|gb|EEC18262.1| laminin beta 1 chain, putative [Ixodes scapularis] Length = 2084 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 38/327 (11%), Positives = 66/327 (20%), Gaps = 18/327 (5%) Query: 157 GHSGED---VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 G G C + R Y + D E Sbjct: 1220 GTYGFGPGGCRPCDCNGIGSLDNFCDAQTGQCKCRPNTYGRQCD------ECQPGYWNYP 1273 Query: 214 ANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273 R G + + + G + G Y + + Sbjct: 1274 NCQRCECHGHADTCD-SRTGHCSHCRDFTSGPHCDRCETGFYGDPRYGVDIPCRPCPCPG 1332 Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333 ++ + + + + G V + + GE + + Sbjct: 1333 TIDSGVNHATSCDLDPRTGNVACHCSPGYVGERCDRCANNYYGEPNAPGGECRRCECSGN 1392 Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT-LHNEDYIKGLDASGKVMRGG 392 T Q G T V N G H D + G Sbjct: 1393 TDDT-------QPGNCDSRTGVCLRCLYNTEGHHCERCKPGHYGDASRQQCLECVCNMLG 1445 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 D G V +P V + P+ + C C + K + Sbjct: 1446 MDHTRGYCDAVTGQCPCLPNVEGRSCDRCAPNFWKIASGEGCEDCGCDPQGSYDLKCNEF 1505 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRD 479 C G + H+ + Sbjct: 1506 DGQCPCKPGHGGRQCNQCQDLHWGNPR 1532 >gi|76800822|ref|YP_325830.1| Hef nuclease [Natronomonas pharaonis DSM 2160] gi|76556687|emb|CAI48259.1| probable nuclease domain protein/ probable ATP-dependent helicase [Natronomonas pharaonis DSM 2160] Length = 845 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 10/56 (17%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + VG AR+L +++ S + D +L V VGD+ A+ I + Sbjct: 790 VAEVGPVTARALLEHFGSVEAVMSA----------DEEALQAVDGVGDVTAERIRD 835 >gi|297538806|ref|YP_003674575.1| competence protein ComEA helix-hairpin-helix repeat-containing protein [Methylotenera sp. 301] gi|297258153|gb|ADI29998.1| competence protein ComEA helix-hairpin-helix repeat protein [Methylotenera sp. 301] Length = 215 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 29/64 (45%) Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 + + ++++ +F+ + N L + +G + AQAI+++ + +V+ Sbjct: 1 MKKILLAFVTFLSFSLSAMAGVNINTATQAELESLDGIGPVKAQAIIDYRKKNGGFKSVD 60 Query: 627 ALLK 630 L K Sbjct: 61 ELEK 64 >gi|331268387|ref|YP_004394879.1| hypothetical protein CbC4_0202 [Clostridium botulinum BKT015925] gi|329124937|gb|AEB74882.1| protein of unknown function DUF147 [Clostridium botulinum BKT015925] Length = 354 Score = 43.2 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 17/51 (33%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 +N + + L V +G+ A+AI + R ++ Sbjct: 302 IENLVNNFKELKEVMEASYEELDNVEGIGEARAKAIKNGLRRLREQFMIDK 352 >gi|303235299|ref|ZP_07321917.1| excinuclease ABC, C subunit [Finegoldia magna BVS033A4] gi|302493613|gb|EFL53401.1| excinuclease ABC, C subunit [Finegoldia magna BVS033A4] Length = 608 Score = 43.2 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 10/61 (16%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I+ +G + ++L K++ + + L V + + A+ IV +++ Sbjct: 558 NIKLIGEKRKKALMKHFKTLDRIKKA----------SVEELCEVDGMNEKAAENIVNYFK 607 Query: 618 N 618 Sbjct: 608 Q 608 >gi|253681837|ref|ZP_04862634.1| DNA integrity scanning protein DisA [Clostridium botulinum D str. 1873] gi|253561549|gb|EES91001.1| DNA integrity scanning protein DisA [Clostridium botulinum D str. 1873] Length = 354 Score = 43.2 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 17/51 (33%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 +N + + L V +G+ A+AI + R ++ Sbjct: 302 IENLVNNFKELKEVMEASYEELDNVEGIGEARAKAIKNGLRRLREQFMIDK 352 >gi|290998587|ref|XP_002681862.1| topoisomerase II-binding protein 1 [Naegleria gruberi] gi|284095487|gb|EFC49118.1| topoisomerase II-binding protein 1 [Naegleria gruberi] Length = 628 Score = 43.2 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 3/68 (4%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQL 704 ENKK+ TG + +R + Q GA+ + L+++ D +IV D K+EKA+ Sbjct: 311 FENKKISITG-FEGAERSDMIYLIKQTGAIYTGDLNKQNDFLIVKSFDLVSKKIEKAKTW 369 Query: 705 GVKIMNEE 712 + I++ + Sbjct: 370 ELTILSPD 377 >gi|169824072|ref|YP_001691683.1| excinuclease ABC subunit C [Finegoldia magna ATCC 29328] gi|229558030|sp|B0S0L4|UVRC_FINM2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|167830877|dbj|BAG07793.1| excinuclease ABC subunit C [Finegoldia magna ATCC 29328] Length = 608 Score = 43.2 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 10/61 (16%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I +G + ++L K++ + + L V + + A+ IV +++ Sbjct: 558 NIALIGEKRKKALMKHFKTLDRIKKA----------SVEELCEVDGMNEKAAENIVNYFK 607 Query: 618 N 618 Sbjct: 608 Q 608 >gi|323454653|gb|EGB10523.1| hypothetical protein AURANDRAFT_62499 [Aureococcus anophagefferens] Length = 1848 Score = 43.2 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 18/96 (18%) Query: 609 AQAIVE----FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 A+A+V F + + + R + + + K+ FTG + I R+ Sbjct: 1123 AEAVVAGSGAFAHASAFRKLADEVWRHGG--GARSIEAAENCLAGHKVCFTGVFETIGRN 1180 Query: 665 ---------KAQEYVTQLGAVVSAILSRKTDIIIVG 691 + G + ++ T +++VG Sbjct: 1181 RPDTQGHIRELTAR---FGGICRDGVTSSTTVLVVG 1213 >gi|86604931|ref|YP_473694.1| excinuclease ABC subunit C [Synechococcus sp. JA-3-3Ab] gi|119367850|sp|Q2JXP8|UVRC_SYNJA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|86553473|gb|ABC98431.1| excinuclease ABC, C subunit [Synechococcus sp. JA-3-3Ab] Length = 621 Score = 43.2 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 6/45 (13%), Positives = 15/45 (33%) Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 + ++ L +VP +G +A+ I ++ Sbjct: 572 LMEAFRSLARIQVATEEQLAQVPGIGPKLARQIYRYFHPEAETEL 616 >gi|315230780|ref|YP_004071216.1| ATP-dependent RNA helicase [Thermococcus barophilus MP] gi|315183808|gb|ADT83993.1| ATP-dependent RNA helicase [Thermococcus barophilus MP] Length = 770 Score = 42.9 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 10/56 (17%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 G+ +V A +A+ L +++ S + N L+ V +G+ IA+ I Sbjct: 714 GLPYVSATLAKRLLRHFGSVERVFTAKEN----------ELMEVEGIGEKIAREIR 759 >gi|288561345|ref|YP_003424831.1| Hef nuclease [Methanobrevibacter ruminantium M1] gi|288544055|gb|ADC47939.1| Hef nuclease [Methanobrevibacter ruminantium M1] Length = 842 Score = 42.9 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 19/106 (17%) Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSL-GIRHVGAEIARSLAKYYLSYQNFAQEINNI 587 ++ ++ E+ +F + + ++G A++L +++ S + Q Sbjct: 747 REQQGEKKSIQIRTERKPQNLWEQQLFIIESLPNIGPVHAKNLLEHFGSVKAVLQA---- 802 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVE-------FYQNPR-NICAV 625 D L V +G A++I E +++ P N + Sbjct: 803 ------DEKQLQEVDGIGKKTAKSIKEVVDGKYLYFKKPEKNEKLI 842 >gi|79517236|ref|NP_197639.2| NAD+ ADP-ribosyltransferase [Arabidopsis thaliana] gi|332005648|gb|AED93031.1| NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferase [Arabidopsis thaliana] Length = 814 Score = 42.9 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGD-----NPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 ++ + + G VS + ++V SK+ +A + G+ +++E + ++++ Sbjct: 206 KKKIERNGGKVSNTVQG-VTCLVVSPAERERGGTSKMVEAMEQGLPVVSEAWLIDSVEKH 264 Query: 722 NT 723 Sbjct: 265 EA 266 >gi|75171204|sp|Q9FK91|PARP3_ARATH RecName: Full=Poly [ADP-ribose] polymerase 3; Short=PARP-3; AltName: Full=NAD(+) ADP-ribosyltransferase 3; Short=ADPRT-3; AltName: Full=Poly[ADP-ribose] synthase 3 gi|9758653|dbj|BAB09119.1| seed maturation protein PM38 protein [Arabidopsis thaliana] Length = 815 Score = 42.9 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGD-----NPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 ++ + + G VS + ++V SK+ +A + G+ +++E + ++++ Sbjct: 207 KKKIERNGGKVSNTVQG-VTCLVVSPAERERGGTSKMVEAMEQGLPVVSEAWLIDSVEKH 265 Query: 722 NT 723 Sbjct: 266 EA 267 >gi|330508988|ref|YP_004385416.1| DEAD/DEAH box helicase domain-containing protein [Methanosaeta concilii GP-6] gi|328929796|gb|AEB69598.1| DEAD/DEAH box helicase domain protein [Methanosaeta concilii GP-6] Length = 762 Score = 42.9 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 10/86 (11%) Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 R + ++ I VG +AR L +++ S + Sbjct: 679 RERRAGHEPKLHGHKTARTLKEQQEYLISAIPSVGPSVARKLLRHFGSIEKVIAASK--- 735 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVE 614 L V +VG IA+ I E Sbjct: 736 -------EELQEVDMVGPKIAERIRE 754 >gi|258513611|ref|YP_003189833.1| DNA integrity scanning protein DisA [Desulfotomaculum acetoxidans DSM 771] gi|257777316|gb|ACV61210.1| protein of unknown function DUF147 [Desulfotomaculum acetoxidans DSM 771] Length = 359 Score = 42.9 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 20/152 (13%), Positives = 46/152 (30%), Gaps = 5/152 (3%) Query: 467 QQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN 526 + ++ ++ ++S + Q + + F + D T+ + I Sbjct: 199 RIVKEIEKYISELGTEGRLITMQLEELLANVAEEGFLV--IQDYGTVLEEKPP--QSIMK 254 Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEIN 585 I+G I + I + G I L + + +N Q Sbjct: 255 IIGSWPAEDLLDLSLIARALGYPGSSGILDQSVFPRGYRILEKLPRLPFPVIENLVQRFG 314 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 + L V +G++ A++I + Sbjct: 315 TLSKVLVATIEELDEVEGIGEVRARSIKKGLS 346 >gi|220928256|ref|YP_002505165.1| excinuclease ABC subunit C [Clostridium cellulolyticum H10] gi|254764928|sp|B8I8F2|UVRC_CLOCE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|219998584|gb|ACL75185.1| excinuclease ABC, C subunit [Clostridium cellulolyticum H10] Length = 613 Score = 42.9 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 10/59 (16%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I +G ++L K++ S + D L V + + IA+ I E++ Sbjct: 565 IEGIGQTRKKALIKHFKSVAAIRKA----------DIAQLQEVNGISEKIAKNIYEYFN 613 >gi|297570214|ref|YP_003691558.1| competence protein ComEA helix-hairpin-helix repeat protein [Desulfurivibrio alkaliphilus AHT2] gi|296926129|gb|ADH86939.1| competence protein ComEA helix-hairpin-helix repeat protein [Desulfurivibrio alkaliphilus AHT2] Length = 85 Score = 42.9 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 23/45 (51%) Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 + N D L +P +G + A AI+E+ +N ++E L++ Sbjct: 21 AALNINTADQEQLQSLPGIGPVTAAAIIEYRENNGEFASIEELVQ 65 >gi|169830397|ref|YP_001716379.1| DNA integrity scanning protein DisA [Candidatus Desulforudis audaxviator MP104C] gi|169637241|gb|ACA58747.1| protein of unknown function DUF147 [Candidatus Desulforudis audaxviator MP104C] Length = 358 Score = 42.9 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 17/51 (33%) Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 Y +N N+ N L V +G+ A++I E N Sbjct: 303 YPVVENLVSVFANLNKVLNASLDELDEVEGIGETRARSIKEGLSRYWNQLL 353 >gi|257386865|ref|YP_003176638.1| Hef nuclease [Halomicrobium mukohataei DSM 12286] gi|257169172|gb|ACV46931.1| helicase domain protein [Halomicrobium mukohataei DSM 12286] Length = 851 Score = 42.9 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 10/57 (17%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + VG AR+L +++ S + D L+ V VG++ A+ + Sbjct: 797 SVAEVGPVTARALLEHFGSVEAVMTA----------DEDELMDVDGVGEVTAERFRD 843 >gi|169834756|ref|YP_001715955.1| hypothetical protein CLK_A0328 [Clostridium botulinum A3 str. Loch Maree] gi|169408863|gb|ACA57273.1| hypothetical protein CLK_A0328 [Clostridium botulinum A3 str. Loch Maree] Length = 125 Score = 42.9 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 25/53 (47%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + + ++ ++I H YY+ + +I D Y+ R + + + +PDL Sbjct: 30 ENEIIELINKRRRQILVHSCIYYRLNDNLIDDYTYNEWARELENLQNMYPDLL 82 >gi|160902691|ref|YP_001568272.1| helix-hairpin-helix repeat-containing competence protein ComEA [Petrotoga mobilis SJ95] gi|160360335|gb|ABX31949.1| competence protein ComEA helix-hairpin-helix repeat protein [Petrotoga mobilis SJ95] Length = 171 Score = 42.9 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 7/126 (5%) Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 E ++ + IN R+ + + +G + ++ Y + + + Sbjct: 50 EELIRLPGIGPAKAQAIINYRQEKGFREIEDIMNVSGIGEKTFSNIKDYIYLSEVIYEIV 109 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 + I N L +P +G + AQ I+E+ I +++ L K PS Sbjct: 110 DEKININEASSEELESLPGIGKVSAQKIIEYRAIKP-ISSLDDLKKLGIPSSTIE----- 163 Query: 645 SEIENK 650 +IE K Sbjct: 164 -KIEGK 168 Score = 37.5 bits (85), Expect = 9.3, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 16/47 (34%) Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 N I LIR+P +G AQAI+ + Q Sbjct: 32 DRLNSYQENKIDLLTASVEELIRLPGIGPAKAQAIINYRQEKGFREI 78 >gi|242044802|ref|XP_002460272.1| hypothetical protein SORBIDRAFT_02g025780 [Sorghum bicolor] gi|241923649|gb|EER96793.1| hypothetical protein SORBIDRAFT_02g025780 [Sorghum bicolor] Length = 528 Score = 42.9 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690 + TG L K R + +E +LG S L K ++V Sbjct: 64 DGPFAGLVICVTG-LSKEARVQVKEATERLGGEYSGSLHPKCTHLVV 109 >gi|332216443|ref|XP_003257361.1| PREDICTED: laminin subunit beta-2 [Nomascus leucogenys] Length = 1678 Score = 42.9 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 45/457 (9%), Positives = 85/457 (18%), Gaps = 52/457 (11%) Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAAS------------GILRRLNPTDIT 233 + G+ F L + G+ + + R L + T Sbjct: 725 KTSGQCLCRTGAF-GLRCDRCQRGQWGFPSCRPCVCNGHADECNTHTGACLGCRDHTGGE 783 Query: 234 RYLNFF---------VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSY 284 +G +G + + G Sbjct: 784 HCERCIAGFHGDPRLPYGGQCRPCPCPEGPGSQRHFATSCHRDEYSQQIVCHCRAGYTGL 843 Query: 285 YNE----------MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQ 334 E + + G + +D + G+ R Sbjct: 844 RCEACAPGHFGDPSRPGGRCQLCECSGNIDPMDPDACDPHTGQCLRC-LHHTEGPHCAHC 902 Query: 335 ASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRD 394 Q N+ G ++ + + + Sbjct: 903 KPGFHGQAARQSCHR---------CTCNLLGTNPQQCPSPDQCHCDPSSGQCPCLPNVQG 953 Query: 395 I---RVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC-----QSRVVRDLN 446 R +G R P F+ C S Sbjct: 954 PSCDRCAPNFWNLTSGHGCQPCACHPSRARGPTCNEFTGQCHCRAGFGGRTCSECQELHW 1013 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506 G A C + Q H R + + F Sbjct: 1014 GDPGLQCRACDCDSRGIDTPQCHRSTGHCSCRPGVSGVRCDQ-CARGFSGIFPACHPCHA 1072 Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 + + Q + ++ T + + E+ GI Sbjct: 1073 CFGDWD-RVVQDLAAHTRRLEQRAQELQQTGVLGAFESSFWHMQEKLRIVQGIVGARNTS 1131 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 A S A+ + + +EI H L V Sbjct: 1132 ATSTAQLVEATEALRREIGEATEHLTQLEEELTDVQD 1168 >gi|296269970|ref|YP_003652602.1| excinuclease ABC subunit C [Thermobispora bispora DSM 43833] gi|296092757|gb|ADG88709.1| excinuclease ABC, C subunit [Thermobispora bispora DSM 43833] Length = 644 Score = 42.9 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 10/79 (12%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 + ++ + + GI +G ++L +++ S + Sbjct: 569 HRFAITYHRSKRSKALKESALDGIPGLGPARRQALLRHFGSLKRLRDATE---------- 618 Query: 596 LSLIRVPLVGDIIAQAIVE 614 + VP +G A+AIV Sbjct: 619 EEIRAVPGIGPATAEAIVS 637 >gi|332018204|gb|EGI58809.1| Laminin subunit beta-1 [Acromyrmex echinatior] Length = 1757 Score = 42.9 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 34/459 (7%), Positives = 88/459 (19%), Gaps = 32/459 (6%) Query: 160 GEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNA 219 G + T N + E + Sbjct: 809 GVGALDNFCDVETGRCKCRPNTYGRTCGQCEPGFWNFPHCQRCECHGHADSCDSKTGACI 868 Query: 220 ASGILRRLNPTDITRYLNF----FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQA 275 + D + + + + Sbjct: 869 NCRDFTTGHNCDRCVDDFYGDPRIGVDIPCRACPCPGTRESGHSYANSCSLDSITQDVVC 928 Query: 276 NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQA 335 F G E + +I G ++ + L Sbjct: 929 ECFEGYSGPRCEHCAENYFGNPEIPGGSCQLCNCNNNTDLRRVGNCDPHT---------- 978 Query: 336 STRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI 395 L + G + + + G D Sbjct: 979 -GHCLQCLFNTD-----GYTCEVCKAGFYGDALR----QDCQDCRCNVLGTDKTAGSCDH 1028 Query: 396 RVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAA 455 R G + P V+ + + + + C C+ VV ++ + Sbjct: 1029 RTGQCPCL-------PHVIGQLCDACEENHWRIASGQGCDPCECDVVGSISDRCNPYDGT 1081 Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQR 515 C G + + + + + + + + ++ Sbjct: 1082 CECKPGFGGRRCNECQTNFWGNPNVECYPCECDVIGSASQQCDRETG-VCVCHKGIGGEK 1140 Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575 Q + + + + R ++ + Sbjct: 1141 CDQCDRGYHGDAPQCSPCGECFDNWDLILDGLRNKTYAVIQEASRIQKVGTTGVYSQEFD 1200 Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + EI ++I++ L + + + +A+ I E Sbjct: 1201 DMEESLNEIQDLISNTTIRSQDLDALDNLAEELAKNISE 1239 >gi|145296316|ref|YP_001139137.1| hypothetical protein cgR_2231 [Corynebacterium glutamicum R] gi|140846236|dbj|BAF55235.1| hypothetical protein [Corynebacterium glutamicum R] Length = 196 Score = 42.9 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%) Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635 S A + +I+ N L+ +P VG+ AQAI++F ++ VE LL+ Sbjct: 124 SVDAAATSASGLISLNTATVADLVTLPGVGEKTAQAIIDFRESNGGFSTVEDLLQVKGIG 183 Query: 636 IGRHEKNVS 644 + E+ Sbjct: 184 PSKFEQISG 192 >gi|21325119|dbj|BAB99741.1| DNA uptake protein and related DNA-binding proteins [Corynebacterium glutamicum ATCC 13032] Length = 194 Score = 42.9 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%) Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635 S A + +I+ N L+ +P VG+ AQAI++F ++ VE LL+ Sbjct: 122 SVDAAATSASGLISLNTATVADLVTLPGVGEKTAQAIIDFRESNGGFSTVEDLLQVKGIG 181 Query: 636 IGRHEKNVS 644 + E+ Sbjct: 182 PSKFEQISG 190 >gi|19553547|ref|NP_601549.1| DNA uptake protein [Corynebacterium glutamicum ATCC 13032] gi|62391191|ref|YP_226593.1| DNA uptake protein or related DNA-binding protein [Corynebacterium glutamicum ATCC 13032] gi|41326531|emb|CAF21013.1| secreted DNA uptake protein or related DNA-binding protein [Corynebacterium glutamicum ATCC 13032] Length = 217 Score = 42.9 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%) Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635 S A + +I+ N L+ +P VG+ AQAI++F ++ VE LL+ Sbjct: 145 SVDAAATSASGLISLNTATVADLVTLPGVGEKTAQAIIDFRESNGGFSTVEDLLQVKGIG 204 Query: 636 IGRHEKNVS 644 + E+ Sbjct: 205 PSKFEQISG 213 >gi|326203844|ref|ZP_08193706.1| excinuclease ABC, C subunit [Clostridium papyrosolvens DSM 2782] gi|325985942|gb|EGD46776.1| excinuclease ABC, C subunit [Clostridium papyrosolvens DSM 2782] Length = 613 Score = 42.9 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 10/59 (16%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 + +G ++L +++ S + D L V + + IA+ I E++ Sbjct: 565 VEGIGQTRKKALIRHFKSVAAIKKA----------DVAQLQEVDGISEKIAKKIYEYFN 613 >gi|330920911|ref|XP_003299202.1| hypothetical protein PTT_10147 [Pyrenophora teres f. teres 0-1] gi|311327216|gb|EFQ92702.1| hypothetical protein PTT_10147 [Pyrenophora teres f. teres 0-1] Length = 665 Score = 42.9 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 5/74 (6%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN----PGSKLEKAQ 702 + + +G + Q +T LGA ++ ++ T +I + +K+ A Sbjct: 16 LSGCNIATSGRFSGTSQAAVQSRLTSLGASTASSVTPDTTHLIATEKDYESNSTKVNAAA 75 Query: 703 QLGVKIMNEEQFLF 716 GV ++ ++L Sbjct: 76 THGVPVVTL-EWLD 88 >gi|256832484|ref|YP_003161211.1| excinuclease ABC, C subunit [Jonesia denitrificans DSM 20603] gi|256686015|gb|ACV08908.1| excinuclease ABC, C subunit [Jonesia denitrificans DSM 20603] Length = 647 Score = 42.9 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 13/111 (11%) Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 P D F + +Q++ +L +++R GI +G Sbjct: 546 PHDEFPVILERQSA---GLYLLQHLRDEAHRFAIKAHRKRRSQGMTVSQLDGIPGLGPTR 602 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 ++L ++ S + + + V +G A +VEF Sbjct: 603 VKALLNHFGSVKKIKEA----------SVDDIAAVKGIGRTTATQVVEFLH 643 >gi|89096393|ref|ZP_01169286.1| glucose-1-dehydrogenase [Bacillus sp. NRRL B-14911] gi|89089247|gb|EAR68355.1| glucose-1-dehydrogenase [Bacillus sp. NRRL B-14911] Length = 261 Score = 42.9 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 24/57 (42%) Query: 647 IENKKLVFTGTLQKIQR------------------------HKAQEYVTQLGAVVSA 679 +E K +V TG + R + E + G S+ Sbjct: 5 LEGKTVVITGGNSGLGRAMAERFGAEKSNVVINYHSNDDNIDEIIEKIENAGGKASS 61 >gi|315284436|ref|ZP_07872157.1| DNA ligase [Listeria marthii FSL S4-120] gi|313611919|gb|EFR86341.1| DNA ligase [Listeria marthii FSL S4-120] Length = 39 Score = 42.5 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 7/24 (29%), Positives = 12/24 (50%) Query: 641 KNVSSEIENKKLVFTGTLQKIQRH 664 + K +V TG L+K+ R+ Sbjct: 14 ETEELVFAGKTVVLTGKLEKLTRN 37 >gi|253577150|ref|ZP_04854470.1| DNA-binding protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843394|gb|EES71422.1| DNA-binding protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 359 Score = 42.5 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 7/51 (13%), Positives = 18/51 (35%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 N + + L V +G++ A++I E + + ++ Sbjct: 307 IHNLVERFGRLPNVMMASIEELDEVDGIGEVRARSIKEGLKRLQEQVFIDR 357 >gi|242279487|ref|YP_002991616.1| excinuclease ABC, C subunit [Desulfovibrio salexigens DSM 2638] gi|242122381|gb|ACS80077.1| excinuclease ABC, C subunit [Desulfovibrio salexigens DSM 2638] Length = 602 Score = 42.5 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 10/62 (16%) Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 L + +G + AR L + S Q + L V +G AQ I + + Sbjct: 550 LSLPGIGPKTARLLWDEFGSVQKMKEA----------SVEDLSNVQGIGKKRAQQIFDAF 599 Query: 617 QN 618 + Sbjct: 600 RE 601 >gi|93003306|tpd|FAA00236.1| TPA: zinc finger protein [Ciona intestinalis] Length = 565 Score = 42.5 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 +V G L K R + ++ V LG V+ L++ Sbjct: 381 VVIIGKLSK-PRDELKQLVENLGGSVTTSLNK 411 >gi|198412483|ref|XP_002122941.1| PREDICTED: Zn-finger (NAD(+) ADP-ribosyltransferase)-3, partial [Ciona intestinalis] Length = 567 Score = 42.5 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 +V G L K R + ++ V LG V+ L++ Sbjct: 383 VVIIGKLSK-PRDELKQLVENLGGSVTTSLNK 413 >gi|86608727|ref|YP_477489.1| excinuclease ABC subunit C [Synechococcus sp. JA-2-3B'a(2-13)] gi|119367851|sp|Q2JM21|UVRC_SYNJB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|86557269|gb|ABD02226.1| excinuclease ABC, C subunit [Synechococcus sp. JA-2-3B'a(2-13)] Length = 623 Score = 42.5 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 10/50 (20%) Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 + L + + S L +VP +G IA+ I ++ Sbjct: 570 KLLMEEFRSIARIQVASE----------DQLAQVPGIGPKIARQIYRYFH 609 >gi|147903139|ref|NP_001081571.1| poly [ADP-ribose] polymerase 1 [Xenopus laevis] gi|84569962|gb|AAI10779.1| PARP protein [Xenopus laevis] Length = 1011 Score = 42.5 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 28/111 (25%) Query: 634 PSIGRHEK-NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685 P E + N K++ G L K + + + + LG V+ +S T Sbjct: 373 PKPTVEETFPEGKPLTNTKVLLIGKLSK-NKDEVKTLIEGLGGKVAGSAHKANLCIS--T 429 Query: 686 DIIIVGDNPGSKLE--KAQQLGVKIMNEEQFLF----------LLQQYNTT 724 + + + K+E KA V++++ + FL LL Q+ + Sbjct: 430 NKEV--EKMSKKMEEVKAA--NVRVVS-DDFLKEVESGKSVQELLSQFGIS 475 >gi|289522347|ref|ZP_06439201.1| late competence protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504183|gb|EFD25347.1| late competence protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 255 Score = 42.5 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 ++++ N+ L +P +G AQAI+ + ++ +VE LL+ + EK Sbjct: 188 SSDLVDLNSATAEMLQSLPGIGPKTAQAILSYREDKGGFRSVEELLEVKGIGPKKMEK 245 >gi|18978387|ref|NP_579744.1| Hef nuclease [Pyrococcus furiosus DSM 3638] gi|18894225|gb|AAL82139.1| ATP-dependent RNA helicase, putative [Pyrococcus furiosus DSM 3638] Length = 764 Score = 42.5 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 10/56 (17%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 G+ HV A +AR L K++ S + L++V +G+ IA+ I Sbjct: 707 GLPHVSATLARRLLKHFGSVERVFTA----------SVAELMKVEGIGEKIAKEIR 752 >gi|291240190|ref|XP_002740003.1| PREDICTED: neurogenic locus notch homolog protein 2-like [Saccoglossus kowalevskii] Length = 3104 Score = 42.5 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 40/374 (10%), Positives = 76/374 (20%), Gaps = 37/374 (9%) Query: 156 DGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL------------ND 203 DG +G I + P + + R E N+ Sbjct: 1965 DGFTGRYCHIDINECQSSPCRYGACYDALNDYRCECITGFTGRNCDSNLDECISSPCQNN 2024 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263 G Y + D F G+ Q + + Sbjct: 2025 ATCIDGFDKYQCVCQPGFRGIHCEVDEDECMSFPCFNGGMCVDLINDFHCQCPLGFGGKT 2084 Query: 264 LGFPVNNGVRQANTFHGIV-----SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 G ++ F+ Y ++ + D+D + + Sbjct: 2085 CGTNIDECATNQCRFNSTCVDLVGDYTCLCQAGYTGRDCDVDIDECNSNPCLHDGHCLDD 2144 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 + F + D D + + Sbjct: 2145 VNIYSCICEVGFTGYNCEINIDDCDPNPCMNNS------VCRDLVNDFECICEVGFTGTV 2198 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 D+ + D V + + P+ Sbjct: 2199 C--------------DVNINDCVSDPCRNRGTCEDLVNNYYCICPEGYAGKNCQLNIDDC 2244 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S +AA+ C + + E S + G ++ FF Sbjct: 2245 SSAPCMHGGTCLDGIAAYTCQCPIGFAGLLCEINIDDCSPNPCENGGTCMDLVNGFFCMC 2304 Query: 499 DPAFSIRIPADIFT 512 P F RI ++ F Sbjct: 2305 RPGFVGRICSNNFD 2318 >gi|115399516|ref|XP_001215347.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114192230|gb|EAU33930.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 779 Score = 42.5 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 8/92 (8%) Query: 646 EIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 + TG + + R+ Q T GA L++ +I G K + A Q Sbjct: 107 TFAGLSICITG-FEDMAFRNYIQNTATANGAEFRKDLTKSVTHLIARSPEGQKYKFATQW 165 Query: 705 GVKIMNEEQFLF-----L-LQQYNTTLRIHDD 730 +KI+ + F + L++ L + +D Sbjct: 166 NIKIVTMKWFTDSLERGMTLEETLYDLHLPED 197 >gi|315655489|ref|ZP_07908388.1| UvrABC system protein C [Mobiluncus curtisii ATCC 51333] gi|315490144|gb|EFU79770.1| UvrABC system protein C [Mobiluncus curtisii ATCC 51333] Length = 693 Score = 42.5 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 10/54 (18%) Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 ++L K++ S + + + VP G A+ +V F N N Sbjct: 646 KALLKHFGSVKRLREASAA----------EIAEVPGFGLKTAENLVAFLNNSGN 689 >gi|302390929|ref|YP_003826749.1| DNA integrity scanning, DisA, linker region [Acetohalobium arabaticum DSM 5501] gi|302203006|gb|ADL11684.1| DNA integrity scanning, DisA, linker region [Acetohalobium arabaticum DSM 5501] Length = 373 Score = 42.5 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 +N ++ A N L V VG++ AQAI E + R+ +E Sbjct: 320 IENLVDNFSDFQAILNASIDELDDVDGVGEVRAQAIKEGLKRLRDQSLLEQ 370 >gi|153005348|ref|YP_001379673.1| excinuclease ABC subunit C [Anaeromyxobacter sp. Fw109-5] gi|189038018|sp|A7HD93|UVRC_ANADF RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|152028921|gb|ABS26689.1| excinuclease ABC, C subunit [Anaeromyxobacter sp. Fw109-5] Length = 716 Score = 42.5 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 10/62 (16%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I +G R+L +++ + + + + +V G A+A+ EF+ Sbjct: 612 ISGIGEGRKRALLRHFGALRRVKEAT----------LDEISQVDGFGPKQARAVFEFFHP 661 Query: 619 PR 620 PR Sbjct: 662 PR 663 >gi|16330212|ref|NP_440940.1| excinuclease ABC subunit C [Synechocystis sp. PCC 6803] gi|3024785|sp|P73580|UVRC_SYNY3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|1652700|dbj|BAA17620.1| excinuclease ABC subunit C [Synechocystis sp. PCC 6803] Length = 626 Score = 42.5 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 16/90 (17%) Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587 + ++K R L+ I LG + L ++ S + Sbjct: 549 EAHRFAVSFHRQQRLSKSRRSRLDE-IPGLGFSRQ-----KQLLAHFRSLDYIREA---- 598 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 L VP +G +AQ I +++ Sbjct: 599 ------SVKQLQEVPGIGPQLAQTIYDYFH 622 >gi|78100875|pdb|1X2I|A Chain A, Crystal Structure Of Archaeal XpfMUS81 HOMOLOG, HEF FROM Pyrococcus Furiosus, Helix-Hairpin-Helix Domain gi|78100876|pdb|1X2I|B Chain B, Crystal Structure Of Archaeal XpfMUS81 HOMOLOG, HEF FROM Pyrococcus Furiosus, Helix-Hairpin-Helix Domain Length = 75 Score = 42.5 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 10/56 (17%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 G+ HV A +AR L K++ S + L++V +G+ IA+ I Sbjct: 18 GLPHVSATLARRLLKHFGSVERVFTA----------SVAELMKVEGIGEKIAKEIR 63 >gi|198463258|ref|XP_001352755.2| GA15220 [Drosophila pseudoobscura pseudoobscura] gi|198151181|gb|EAL30255.2| GA15220 [Drosophila pseudoobscura pseudoobscura] Length = 1204 Score = 42.5 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 28/257 (10%), Positives = 68/257 (26%), Gaps = 11/257 (4%) Query: 110 FITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRA 169 + + +K S+ +T DG I I YE G + ++ G+ G+++ Sbjct: 105 WYEEMTNDRKKSTVASMSWTS----DGAKICIVYEDGAIIVGSVDGNRIFGKELKGTHLT 160 Query: 170 IPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI--AVGRKPYANPRNAASGILRRL 227 L + + +Y ++ +F + G R A+ Sbjct: 161 GVQWSPDNRLILFALASGECHLYDNQGNFAMKLNIQCLKLNGSSSARGQRIASICWFSGR 220 Query: 228 NPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE 287 + R + + +GK + + E + N + N +++ Sbjct: 221 SSNRRNRPVLAICYEIGKVQIMRNENDDEPAIF----DTKMRNVDAKWNHDGTVLAICGT 276 Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347 + V + + S +S + + + + Sbjct: 277 TLEQTVPPAQRDNNQVCFYSPLGRIYRTLKVPGSDITSLSWEGKSLRIAMAVDSFIY-FA 335 Query: 348 RTGILTPVARLEPVNIG 364 E + Sbjct: 336 NIRPDYIWCYFEKTVVF 352 >gi|126463495|ref|YP_001044609.1| excinuclease ABC subunit C [Rhodobacter sphaeroides ATCC 17029] gi|126105159|gb|ABN77837.1| Excinuclease ABC subunit C [Rhodobacter sphaeroides ATCC 17029] Length = 623 Score = 42.5 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 10/77 (12%) Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 ++ + I VGA R+L ++ S + A+ L Sbjct: 555 GAHRAKRAKAVSATPLDEIPGVGAARKRALLAHFGSAKAVARA----------GVPDLCA 604 Query: 601 VPLVGDIIAQAIVEFYQ 617 V + + +AQ+I +F+ Sbjct: 605 VEGISETMAQSIHDFFH 621 >gi|113677594|ref|NP_001038407.1| poly [ADP-ribose] polymerase 1 [Danio rerio] gi|56207903|emb|CAI20897.1| novel protein similar to vertebrate ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) (ADPRT) [Danio rerio] Length = 1013 Score = 42.5 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 13/95 (13%) Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKTDIIIVG 691 E + KL+ G L K + +++V LG ++ +S K +I Sbjct: 382 TEAPADKPLTGMKLLAVGKLSK-NKDDLKKFVEDLGGKITGTASKAALCISSKKEI---- 436 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 + K+E+ + GV+++ + FL +++ L+ Sbjct: 437 EKMSKKMEEVRDAGVRVV-ADDFLTDIKESGKALQ 470 >gi|71679667|gb|AAI00002.1| Poly (ADP-ribose) polymerase family, member 1 [Danio rerio] Length = 1011 Score = 42.5 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 13/95 (13%) Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKTDIIIVG 691 E + KL+ G L K + +++V LG ++ +S K +I Sbjct: 380 TEAPADKPLTGMKLLAVGKLSK-NKDDLKKFVEDLGGKITGTASKAALCISSKKEI---- 434 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 + K+E+ + GV+++ + FL +++ L+ Sbjct: 435 EKMSKKMEEVRDAGVRVV-ADDFLTDIKESGKALQ 468 >gi|281202484|gb|EFA76686.1| TPR repeat-containing protein [Polysphondylium pallidum PN500] Length = 1624 Score = 42.5 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Query: 667 QEYVTQLGAVVSAILSRKTDIIIV-GDNPG-SK--LEKAQQLGVKIMN 710 +EY+ + GA ++ S+ D +I G++ +K L A + I+N Sbjct: 24 KEYLEKHGATIAKRFSKNVDYVIASGESISANKYPLTIATANNIPIIN 71 >gi|309364838|emb|CAP24374.2| CBR-PIS-1 protein [Caenorhabditis briggsae AF16] Length = 1052 Score = 42.5 bits (98), Expect = 0.29, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 V +GA ++ SRK D++I +P K+ KAQ+ V ++N Sbjct: 640 MVEAMGAKITPFFSRKNDLLIAK-SPSEKVTKAQEWKVPVVN 680 >gi|212224218|ref|YP_002307454.1| Hef nuclease [Thermococcus onnurineus NA1] gi|212009175|gb|ACJ16557.1| helicase-associated endonuclease for fork-structured DNA [Thermococcus onnurineus NA1] Length = 789 Score = 42.5 bits (98), Expect = 0.29, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 10/56 (17%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 G+ +V A +A+ L K++ + + L V +G A+ I Sbjct: 733 GLPNVSATLAKRLLKHFGNVERVFTATE----------EELQEVEGIGPKKAREIR 778 >gi|268537308|ref|XP_002633790.1| C. briggsae CBR-PIS-1 protein [Caenorhabditis briggsae] Length = 1056 Score = 42.5 bits (98), Expect = 0.29, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 V +GA ++ SRK D++I +P K+ KAQ+ V ++N Sbjct: 644 MVEAMGAKITPFFSRKNDLLIAK-SPSEKVTKAQEWKVPVVN 684 >gi|254173751|ref|ZP_04880423.1| Type III restriction enzyme, res subunit family [Thermococcus sp. AM4] gi|214032443|gb|EEB73273.1| Type III restriction enzyme, res subunit family [Thermococcus sp. AM4] Length = 807 Score = 42.5 bits (98), Expect = 0.29, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 10/56 (17%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 G+ +V + +A+ L K++ + + L V +G A+ I Sbjct: 750 GLPNVSSTLAKRLLKHFGNVERVFTATE----------EELKEVEGIGPKKAREIR 795 >gi|304389347|ref|ZP_07371312.1| excision endonuclease subunit UvrC [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327465|gb|EFL94698.1| excision endonuclease subunit UvrC [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 693 Score = 42.5 bits (98), Expect = 0.30, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 10/54 (18%) Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 ++L +++ S + + + VP G A+ +V F N N Sbjct: 646 KALLRHFGSVKRLREASAA----------EIAEVPGFGLKTAENLVAFLNNSGN 689 >gi|240047517|ref|YP_002960905.1| hypothetical protein MCJ_003940 [Mycoplasma conjunctivae HRC/581] gi|239985089|emb|CAT05082.1| HYPOTHETICAL PROTEIN MCJ_003940 [Mycoplasma conjunctivae] Length = 1941 Score = 42.5 bits (98), Expect = 0.30, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 58/162 (35%), Gaps = 14/162 (8%) Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 SR F + Q +D F I+ ++Q +++ E + + Sbjct: 1536 SRFIFKLLTFMSQNIDKFKNQTTFIGLIKTWIQNQSVQAKKELKQYIWEILQFAVNDEHM 1595 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDW 595 S+ +N++ + I + + +AK++ N +E + + Sbjct: 1596 VKVVSLVVAKNLN-------INIDKIKDTEYQKIAKFFQEVVNLGIEEPGIVSQVIDKVL 1648 Query: 596 LSLIRVPLVGD------IIAQAIVEFYQNPRNICAVEALLKE 631 ++ ++ I A + V+F+ N I +++++ E Sbjct: 1649 EAIQKINDFSPASLTQIIQAASGVDFFANSDFIALLDSMISE 1690 >gi|28212198|ref|NP_783142.1| DNA integrity scanning protein DisA [Clostridium tetani E88] gi|75541601|sp|Q890L8|DISA_CLOTE RecName: Full=DNA integrity scanning protein disA gi|28204642|gb|AAO37079.1| putative DNA-binding protein [Clostridium tetani E88] Length = 360 Score = 42.5 bits (98), Expect = 0.30, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 20/51 (39%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 +N + + A + L +V +G+ A+AI + + ++ Sbjct: 305 IENVVKNFKELKAVMEASYEQLDKVEGIGEARAKAIKNGLRRLKEQANIDK 355 >gi|225556539|gb|EEH04827.1| RNA polymerase II C-terminal domain phosphatase component [Ajellomyces capsulatus G186AR] Length = 871 Score = 42.1 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 10/89 (11%) Query: 653 VFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKI 708 VF+G L + GA++S +S KT ++ G N +K+ +A + +KI Sbjct: 501 VFSGVLPLGTDTQNADISLWAKSFGAIISHKISSKTTHLVAGRNRTAKVREATRYPNIKI 560 Query: 709 MNEEQFL------FLLQQYNTTLRIHDDD 731 + + L L + + +H +D Sbjct: 561 VTVQWLLDSITQWKRLDEEPYLVPVHPED 589 >gi|197122985|ref|YP_002134936.1| excinuclease ABC subunit C [Anaeromyxobacter sp. K] gi|229557970|sp|B4UGB5|UVRC_ANASK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|196172834|gb|ACG73807.1| excinuclease ABC, C subunit [Anaeromyxobacter sp. K] Length = 707 Score = 42.1 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 10/62 (16%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I +G R+L +++ + + + L +V G A A+ F+ Sbjct: 604 IPGIGEGRKRALLRHFGALRRVREATP----------EELAQVEGFGPRQAAAVHAFFHR 653 Query: 619 PR 620 P Sbjct: 654 PD 655 >gi|172036349|ref|YP_001802850.1| excinuclease ABC subunit C [Cyanothece sp. ATCC 51142] gi|171697803|gb|ACB50784.1| excinuclease ABC subunit C [Cyanothece sp. ATCC 51142] Length = 620 Score = 42.1 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 16/90 (17%) Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587 + + K R+ L+ I LG + + L ++ S + Sbjct: 545 EAHRFAVTFHRQQRLKKSRHSRLDD-IPGLGFQRQ-----KQLLAHFHSIDYIREA---- 594 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 L V VG +A+ I +++ Sbjct: 595 ------SIEKLQEVSGVGPALAREIYDYFH 618 >gi|78042711|ref|YP_361151.1| DNA integrity scanning protein DisA [Carboxydothermus hydrogenoformans Z-2901] gi|119365931|sp|Q3A9N3|DISA_CARHZ RecName: Full=DNA integrity scanning protein disA gi|77994826|gb|ABB13725.1| putative DNA-binding protein [Carboxydothermus hydrogenoformans Z-2901] Length = 352 Score = 42.1 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 19/46 (41%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 +N Q N+ + L V +G++ A++I E + R Sbjct: 302 IENLVQTFGNLKNIMSASIEELDDVEGIGEVRARSIKEGLKKLREQ 347 >gi|294101992|ref|YP_003553850.1| excinuclease ABC, C subunit [Aminobacterium colombiense DSM 12261] gi|293616972|gb|ADE57126.1| excinuclease ABC, C subunit [Aminobacterium colombiense DSM 12261] Length = 491 Score = 42.1 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 33/240 (13%), Positives = 60/240 (25%), Gaps = 28/240 (11%) Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 G + V+V G P + F + Sbjct: 274 WRIDGFDISHMAGHETYGVVVVFEQGVSNPSLYRRFKVRTVEGIDDFRSIEEVVKRRYSK 333 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 + + N +L Q K I + + + + Sbjct: 334 MLENNEPLPQL------ILIDGGPIQLEFAKKALSELKMEKIPAISLAKREELIYHNEKE 387 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 IR+ L+ Q+ F S + R + I Sbjct: 388 PPIRLDWTDPVLRLLQRVRDESH----RFAIKSHRRGRGMVLTRSVLE--------EIPG 435 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 VG +A SL + S + A L++V +G ++A+ I F++ N Sbjct: 436 VGKHMAASLLSSFGSVKKIAVLTP----------EELMQVKGIGPVLAKNIAAFFRGEDN 485 >gi|321464644|gb|EFX75651.1| hypothetical protein DAPPUDRAFT_55885 [Daphnia pulex] Length = 1004 Score = 42.1 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 41/86 (47%), Gaps = 7/86 (8%) Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 +EV+ + + +E K + L+K + K + + +L V + ++ K +I Sbjct: 370 EEVNVKKEKSDSKRPPTLEGLKFIVDSKLEK-SKEKVEAEIKKLLGSVGSRVTEKIAAVI 428 Query: 690 -----VGDNPGSKLEKAQQLGVKIMN 710 + + SKL+KA +LG+ +++ Sbjct: 429 STKDNLKEKD-SKLKKASELGIHVVD 453 >gi|219853501|ref|YP_002470623.1| hypothetical protein CKR_0158 [Clostridium kluyveri NBRC 12016] gi|219567225|dbj|BAH05209.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 360 Score = 42.1 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 18/51 (35%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 N + + + L RV +G+ A+AI + R ++ Sbjct: 308 MDNLVKNFKELKEIMEASYEDLDRVEGIGEARARAIKNGLRRLREQIMIDN 358 >gi|57640956|ref|YP_183434.1| Hef nuclease [Thermococcus kodakarensis KOD1] gi|57159280|dbj|BAD85210.1| helicase-associated endonuclease for fork-structured DNA [Thermococcus kodakarensis KOD1] Length = 804 Score = 42.1 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 10/56 (17%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 G+ +V A +A+ L K++ + + L V +G A+ I Sbjct: 751 GLPNVSATLAKRLLKHFGNVERVFTATE----------EELKEVEGIGPKKAREIR 796 >gi|153952836|ref|YP_001393601.1| DNA integrity scanning protein DisA [Clostridium kluyveri DSM 555] gi|189083127|sp|A5N4M2|DISA_CLOK5 RecName: Full=DNA integrity scanning protein disA gi|146345717|gb|EDK32253.1| Predicted DNA-binding protein [Clostridium kluyveri DSM 555] Length = 354 Score = 42.1 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 18/51 (35%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 N + + + L RV +G+ A+AI + R ++ Sbjct: 302 MDNLVKNFKELKEIMEASYEDLDRVEGIGEARARAIKNGLRRLREQIMIDN 352 >gi|218260666|ref|ZP_03475862.1| hypothetical protein PRABACTJOHN_01526 [Parabacteroides johnsonii DSM 18315] gi|218224416|gb|EEC97066.1| hypothetical protein PRABACTJOHN_01526 [Parabacteroides johnsonii DSM 18315] Length = 57 Score = 42.1 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 14/27 (51%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPII 43 + ++ +L + + H+ YY S P I Sbjct: 31 VKDKIKALREALEQHNYNYYVLSAPTI 57 >gi|73985821|ref|XP_533831.2| PREDICTED: similar to Laminin beta-2 chain precursor (S-laminin) (Laminin B1s chain) [Canis familiaris] Length = 1801 Score = 42.1 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 39/370 (10%), Positives = 69/370 (18%), Gaps = 15/370 (4%) Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 G G + + + + P + Sbjct: 932 CPEGPGSQRHFATSCHRDGYSQQIMCHCRAGYTGLRCEACAPGHFGDP-SRPDGQCQPCE 990 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 +G + +D + + G+ R + Q Sbjct: 991 CNGNIDPMDPDACDPRTGQCLRC-LYHTEGPHCAHCKPGFYGQAARQSCHRCTCNL-LGT 1048 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 +P N + L R +G Sbjct: 1049 DPQQCPSIDRCNCD-PSSGQCPCLPNVQGPTCD----RCAPNFWNLTSGHGCQPCTCHPS 1103 Query: 419 NERHPDAQPFSFPSFCPIC-----QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473 R P F+ C S G A C + Q Sbjct: 1104 RARGPTCNEFTGQCHCRAGFGGRTCSECQELHWGDPGLQCRACDCDPHGIDTPQCHRSTG 1163 Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533 H R + + F + + Q + D+ Sbjct: 1164 HCSCRPGVSGVRCDQ-CARGFSGVFPACHPCHTCFGDWD-RVVQDLAARTRRLEQRVQDL 1221 Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593 T + + E+ GI A S A+ + + +EI H Sbjct: 1222 QQTGVLGAFESSFWRIQEKLGTVQGIVGARNTSAASTAQLVEATEELRREIGEATEHLTQ 1281 Query: 594 DWLSLIRVPL 603 L V Sbjct: 1282 LEAELTDVQD 1291 >gi|195169611|ref|XP_002025614.1| GL20799 [Drosophila persimilis] gi|194109107|gb|EDW31150.1| GL20799 [Drosophila persimilis] Length = 1204 Score = 42.1 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 28/257 (10%), Positives = 68/257 (26%), Gaps = 11/257 (4%) Query: 110 FITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRA 169 + + +K S+ +T DG I I YE G + ++ G+ G+++ Sbjct: 105 WYEEMTNDRKKSTVASMSWTS----DGAKICIVYEDGAIIVGSVDGNRIFGKELKGTHLT 160 Query: 170 IPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI--AVGRKPYANPRNAASGILRRL 227 L + + +Y ++ +F + G R A+ Sbjct: 161 GVQWSPDNRLILFALASGECHLYDNQGNFAMKLNIQCLKLNGSSSARGQRIASICWFSGR 220 Query: 228 NPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE 287 + R + + +GK + + E + N + N +++ Sbjct: 221 SSNRRNRPVLAICYEIGKVQIMRNENDDEPAIF----DTKMRNVDAKWNHDGTVLAICGT 276 Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347 + V + + S +S + + + + Sbjct: 277 TLEQTVPAAQRDNNQVCFYSPLGRIYRTLKVPGSDITSLSWEGKSLRIAMAVDSFIY-FA 335 Query: 348 RTGILTPVARLEPVNIG 364 E + Sbjct: 336 NIRPDYIWCYFEKTVVF 352 >gi|193084204|gb|ACF09868.1| ATP-dependent RNA helicase EIF-4A family [uncultured marine group II euryarchaeote KM3-136-D10] Length = 928 Score = 42.1 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 10/57 (17%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + ++G A+ L ++ S + Q D L +V +G A+AI+E Sbjct: 878 SLPNIGPTTAKRLLDHFKSIEVLTQA----------DEAELCQVTGIGPTSARAILE 924 >gi|218961967|ref|YP_001741742.1| putative ComEA protein-related protein [Candidatus Cloacamonas acidaminovorans] gi|167730624|emb|CAO81536.1| putative ComEA protein-related protein [Candidatus Cloacamonas acidaminovorans] Length = 215 Score = 42.1 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 25/56 (44%) Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 N + L + +G++ AQAI+++ + + +E ++K EKN Sbjct: 155 NINTANLEELCTLSGIGEVKAQAIIDWREENGSFETIEDIMKVKGIGPKTFEKNKD 210 >gi|148262448|ref|YP_001229154.1| excinuclease ABC subunit C [Geobacter uraniireducens Rf4] gi|146395948|gb|ABQ24581.1| Excinuclease ABC subunit C [Geobacter uraniireducens Rf4] Length = 636 Score = 42.1 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 10/66 (15%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 G+ VG + + L +++ S + L +V + +A+A+ E + Sbjct: 581 GVPGVGTKRRKELLRHFGSLKKLETAT----------LEELQKVEGITRTVAEAVWEHFH 630 Query: 618 NPRNIC 623 N Sbjct: 631 PKGNQE 636 >gi|75213086|sp|Q9SWB4|PARP3_SOYBN RecName: Full=Poly [ADP-ribose] polymerase 3; Short=PARP-3; AltName: Full=NAD(+) ADP-ribosyltransferase 3; Short=ADPRT-3; AltName: Full=Poly[ADP-ribose] synthase 3 gi|5802246|gb|AAD51626.1|AF169023_1 seed maturation protein PM38 [Glycine max] Length = 815 Score = 42.1 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 24/61 (39%), Gaps = 6/61 (9%) Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGD-----NPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 + + + G V+ + T ++ SKL +A + + ++ E + +++ Sbjct: 206 KTTIEKHGGKVANSIIGST-CLVASPAERERGGTSKLAEAMERSIPVVREAWLIDSIEKQ 264 Query: 722 N 722 Sbjct: 265 E 265 >gi|83310048|ref|YP_420312.1| transposase [Magnetospirillum magneticum AMB-1] gi|82944889|dbj|BAE49753.1| Transposase and inactivated derivative [Magnetospirillum magneticum AMB-1] Length = 342 Score = 42.1 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 41/128 (32%), Gaps = 28/128 (21%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNII---AHNNDDWLSLIRVPLVGDIIAQAIVEF 615 + E LA + + +++ I N+ D + +P +G +IA AIV Sbjct: 174 LPQAAREAMAMLAAHVREIDSKIDALDHEILRWHRNDADSQRVASIPGIGPLIASAIVAA 233 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL----------------VF--TGT 657 +P+ + ++ K + V TGT Sbjct: 234 MGDPKRFKTGRDFAAWLGLVPSQNSTG------GKTVLGPITKAGDRYLRSLLVVGATGT 287 Query: 658 LQKIQRHK 665 L + +R + Sbjct: 288 LWR-RRKE 294 >gi|198476758|ref|XP_002132437.1| GA25460 [Drosophila pseudoobscura pseudoobscura] gi|198137839|gb|EDY69839.1| GA25460 [Drosophila pseudoobscura pseudoobscura] Length = 1794 Score = 42.1 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 41/452 (9%), Positives = 90/452 (19%), Gaps = 24/452 (5%) Query: 157 GHSGED---VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 G G AC I + Y + + G + Sbjct: 833 GTYGFSPEGCKACDCNSIGSKDNNCDLITGQCQCVPNTYGRECN-------QCQPGYWNF 885 Query: 214 ANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273 R LN G + + G Y +G Sbjct: 886 PECRVCQCNGHAAQCDPLKGTCLNCQDFTTGYSCDSCLDGYYGNPLFGSEIGCRPCRCPE 945 Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLV-YKVDEFSLQKQLGERARSPRWMISHKFAE 332 + + + L + +G + + + Sbjct: 946 TVASGLAHADGCSLDTRNNNMLCHCQEGYAGARCEICADNHFGSPENGGTCSKCDCSNNI 1005 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 T D + + + + G N Sbjct: 1006 DPYDTGNCDRETGSCQKCLYQTTGDHCELCRDGFFGDALQ-QNCQQCDCDFLGTNNTLAH 1064 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 D G + P V + ++ + + C C + + + Sbjct: 1065 CDRHSGQCPCL-------PNVQGLRCDQCAVNHWKIASGEGCEACNCDAIGAVQEQCNPY 1117 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRD-AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 +C G A ++ + + + F + + + Sbjct: 1118 TGQCKCKQGFGGRACNQCEAHYWGNPNERCQACECDQYGAADFQCDRETGHCV--CHEGI 1175 Query: 512 TLQRRQQTSTTKIENILGFGDV-SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 + Q + I N +D I S E I + Sbjct: 1176 GGYKCNQCARGFIGQFPHCSPCGECFNNWDIILTALEDSTEATIQRAKEIKQVGATG-AY 1234 Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + Q I +++ + + + R+ Sbjct: 1235 TAEFSELDKKLQHIRDLLQNTSVSLEDIDRLD 1266 >gi|240103224|ref|YP_002959533.1| Hef nuclease [Thermococcus gammatolerans EJ3] gi|239910778|gb|ACS33669.1| Hef, Helicase-associated endonuclease for fork-structured DNA (Hef) [Thermococcus gammatolerans EJ3] Length = 801 Score = 42.1 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 10/56 (17%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 G+ +V + +A+ L +++ + + L V +G+ A+ I Sbjct: 744 GLPNVSSTLAKRLLRHFGNVEKVFTATE----------EELKEVEGIGEKKAREIR 789 >gi|206564307|ref|YP_002235070.1| putative transposase [Burkholderia cenocepacia J2315] gi|198040347|emb|CAR56332.1| putative transposase [Burkholderia cenocepacia J2315] Length = 344 Score = 42.1 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 4/84 (4%) Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 + L ++ + Q + +N L +P VG I A A+V + +N Sbjct: 188 KLLDQHVRELETQIQTWHR----DNPASRKLAEIPGVGPITASALVASIGDAKNFENGRQ 243 Query: 628 LLKEVSPSIGRHEKNVSSEIENKK 651 L + +H S + Sbjct: 244 LAAWLGLVPRQHSSGGKSTLLGMS 267 >gi|206562856|ref|YP_002233619.1| putative transposase [Burkholderia cenocepacia J2315] gi|198038896|emb|CAR54858.1| putative transposase [Burkholderia cenocepacia J2315] Length = 344 Score = 42.1 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 4/84 (4%) Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 + L ++ + Q + +N L +P VG I A A+V + +N Sbjct: 188 KLLDQHVRELETQIQTWHR----DNPASRKLAEIPGVGPITASALVASIGDAKNFENGRQ 243 Query: 628 LLKEVSPSIGRHEKNVSSEIENKK 651 L + +H S + Sbjct: 244 LAAWLGLVPRQHSSGGKSTLLGMS 267 >gi|148560017|ref|YP_001258680.1| excinuclease ABC subunit C [Brucella ovis ATCC 25840] gi|148371274|gb|ABQ61253.1| excinuclease ABC, C subunit [Brucella ovis ATCC 25840] Length = 690 Score = 42.1 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ R I +G R+L ++ + A + Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619 L+++ + + +A+AI + +++ Sbjct: 667 EDLVQIDGISEAMARAIHDHFRDK 690 >gi|306842035|ref|ZP_07474708.1| excinuclease ABC, C subunit [Brucella sp. BO2] gi|306287876|gb|EFM59296.1| excinuclease ABC, C subunit [Brucella sp. BO2] Length = 690 Score = 42.1 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ R I +G R+L ++ + A + Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619 L+++ + + +A+AI + +++ Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690 >gi|306843659|ref|ZP_07476259.1| excinuclease ABC, C subunit [Brucella sp. BO1] gi|306275969|gb|EFM57678.1| excinuclease ABC, C subunit [Brucella sp. BO1] Length = 690 Score = 42.1 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ R I +G R+L ++ + A + Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619 L+++ + + +A+AI + +++ Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690 >gi|294852061|ref|ZP_06792734.1| excinuclease ABC [Brucella sp. NVSL 07-0026] gi|294820650|gb|EFG37649.1| excinuclease ABC [Brucella sp. NVSL 07-0026] Length = 702 Score = 42.1 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ R I +G R+L ++ + A + Sbjct: 629 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 678 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619 L+++ + + +A+AI + +++ Sbjct: 679 EDLMQIDGISEAMARAIHDHFRDK 702 >gi|261314539|ref|ZP_05953736.1| excinuclease ABC subunit C [Brucella pinnipedialis M163/99/10] gi|261303565|gb|EEY07062.1| excinuclease ABC subunit C [Brucella pinnipedialis M163/99/10] Length = 136 Score = 42.1 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ R I +G R+L ++ + A + Sbjct: 63 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 112 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619 L+++ + + +A+AI + +++ Sbjct: 113 EDLMQIDGISEAMARAIHDHFRDK 136 >gi|260168450|ref|ZP_05755261.1| excinuclease ABC subunit C [Brucella sp. F5/99] gi|261757912|ref|ZP_06001621.1| excinuclease ABC subunit C [Brucella sp. F5/99] gi|261737896|gb|EEY25892.1| excinuclease ABC subunit C [Brucella sp. F5/99] Length = 690 Score = 42.1 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ R I +G R+L ++ + A + Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619 L+++ + + +A+AI + +++ Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690 >gi|256254719|ref|ZP_05460255.1| excinuclease ABC subunit C [Brucella ceti B1/94] gi|261221899|ref|ZP_05936180.1| UvrABC system protein C [Brucella ceti B1/94] gi|260920483|gb|EEX87136.1| UvrABC system protein C [Brucella ceti B1/94] Length = 690 Score = 42.1 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ R I +G R+L ++ + A + Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619 L+++ + + +A+AI + +++ Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690 >gi|256159427|ref|ZP_05457202.1| excinuclease ABC subunit C [Brucella ceti M490/95/1] gi|265997862|ref|ZP_06110419.1| UvrABC system protein C [Brucella ceti M490/95/1] gi|262552330|gb|EEZ08320.1| UvrABC system protein C [Brucella ceti M490/95/1] Length = 555 Score = 42.1 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ R I +G R+L ++ + A + Sbjct: 482 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 531 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619 L+++ + + +A+AI + +++ Sbjct: 532 EDLMQIDGISEAMARAIHDHFRDK 555 >gi|256060824|ref|ZP_05450984.1| excinuclease ABC subunit C [Brucella neotomae 5K33] gi|261324816|ref|ZP_05964013.1| UvrABC system protein C [Brucella neotomae 5K33] gi|261300796|gb|EEY04293.1| UvrABC system protein C [Brucella neotomae 5K33] Length = 690 Score = 42.1 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ R I +G R+L ++ + A + Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619 L+++ + + +A+AI + +++ Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690 >gi|256031311|ref|ZP_05444925.1| excinuclease ABC subunit C [Brucella pinnipedialis M292/94/1] gi|265988396|ref|ZP_06100953.1| UvrABC system protein C [Brucella pinnipedialis M292/94/1] gi|264660593|gb|EEZ30854.1| UvrABC system protein C [Brucella pinnipedialis M292/94/1] Length = 690 Score = 42.1 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ R I +G R+L ++ + A + Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619 L+++ + + +A+AI + +++ Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690 >gi|256369133|ref|YP_003106641.1| excinuclease ABC subunit C [Brucella microti CCM 4915] gi|255999293|gb|ACU47692.1| excinuclease ABC subunit C [Brucella microti CCM 4915] Length = 611 Score = 42.1 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ R I +G R+L ++ + A + Sbjct: 538 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 587 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619 L+++ + + +A+AI + +++ Sbjct: 588 EDLMQIDGISEAMARAIHDHFRDK 611 >gi|254718836|ref|ZP_05180647.1| excinuclease ABC subunit C [Brucella sp. 83/13] gi|265983820|ref|ZP_06096555.1| UvrABC system protein C [Brucella sp. 83/13] gi|306838757|ref|ZP_07471591.1| excinuclease ABC, C subunit [Brucella sp. NF 2653] gi|264662412|gb|EEZ32673.1| UvrABC system protein C [Brucella sp. 83/13] gi|306406159|gb|EFM62404.1| excinuclease ABC, C subunit [Brucella sp. NF 2653] Length = 690 Score = 42.1 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ R I +G R+L ++ + A + Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619 L+++ + + +A+AI + +++ Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690 >gi|254713824|ref|ZP_05175635.1| excinuclease ABC subunit C [Brucella ceti M644/93/1] gi|254717118|ref|ZP_05178929.1| excinuclease ABC subunit C [Brucella ceti M13/05/1] gi|261218933|ref|ZP_05933214.1| excinuclease ABC subunit C [Brucella ceti M13/05/1] gi|261321568|ref|ZP_05960765.1| UvrABC system protein C [Brucella ceti M644/93/1] gi|260924022|gb|EEX90590.1| excinuclease ABC subunit C [Brucella ceti M13/05/1] gi|261294258|gb|EEX97754.1| UvrABC system protein C [Brucella ceti M644/93/1] Length = 690 Score = 42.1 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ R I +G R+L ++ + A + Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619 L+++ + + +A+AI + +++ Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690 >gi|254709820|ref|ZP_05171631.1| excinuclease ABC subunit C [Brucella pinnipedialis B2/94] gi|261317358|ref|ZP_05956555.1| UvrABC system protein C [Brucella pinnipedialis B2/94] gi|261296581|gb|EEY00078.1| UvrABC system protein C [Brucella pinnipedialis B2/94] Length = 690 Score = 42.1 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ R I +G R+L ++ + A + Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619 L+++ + + +A+AI + +++ Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690 >gi|254707070|ref|ZP_05168898.1| excinuclease ABC subunit C [Brucella pinnipedialis M163/99/10] Length = 156 Score = 42.1 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ R I +G R+L ++ + A + Sbjct: 83 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 132 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619 L+++ + + +A+AI + +++ Sbjct: 133 EDLMQIDGISEAMARAIHDHFRDK 156 >gi|254704029|ref|ZP_05165857.1| excinuclease ABC subunit C [Brucella suis bv. 3 str. 686] gi|261754683|ref|ZP_05998392.1| UvrABC system protein C [Brucella suis bv. 3 str. 686] gi|261744436|gb|EEY32362.1| UvrABC system protein C [Brucella suis bv. 3 str. 686] Length = 690 Score = 42.1 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ R I +G R+L ++ + A + Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619 L+++ + + +A+AI + +++ Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690 >gi|254701482|ref|ZP_05163310.1| excinuclease ABC subunit C [Brucella suis bv. 5 str. 513] gi|261752025|ref|ZP_05995734.1| UvrABC system protein C [Brucella suis bv. 5 str. 513] gi|261741778|gb|EEY29704.1| UvrABC system protein C [Brucella suis bv. 5 str. 513] Length = 690 Score = 42.1 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ R I +G R+L ++ + A + Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619 L+++ + + +A+AI + +++ Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690 >gi|225627198|ref|ZP_03785236.1| excinuclease ABC, C subunit [Brucella ceti str. Cudo] gi|225618033|gb|EEH15077.1| excinuclease ABC, C subunit [Brucella ceti str. Cudo] Length = 702 Score = 42.1 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ R I +G R+L ++ + A + Sbjct: 629 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 678 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619 L+++ + + +A+AI + +++ Sbjct: 679 EDLMQIDGISEAMARAIHDHFRDK 702 >gi|163842969|ref|YP_001627373.1| excinuclease ABC subunit C [Brucella suis ATCC 23445] gi|163673692|gb|ABY37803.1| excinuclease ABC, C subunit [Brucella suis ATCC 23445] Length = 690 Score = 42.1 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ R I +G R+L ++ + A + Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619 L+++ + + +A+AI + +++ Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690 >gi|161486699|ref|NP_697713.2| excinuclease ABC subunit C [Brucella suis 1330] Length = 690 Score = 42.1 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ R I +G R+L ++ + A + Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619 L+++ + + +A+AI + +++ Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690 >gi|161618668|ref|YP_001592555.1| excinuclease ABC subunit C [Brucella canis ATCC 23365] gi|260566723|ref|ZP_05837193.1| excinuclease ABC subunit C [Brucella suis bv. 4 str. 40] gi|161335479|gb|ABX61784.1| excinuclease ABC, C subunit [Brucella canis ATCC 23365] gi|260156241|gb|EEW91321.1| excinuclease ABC subunit C [Brucella suis bv. 4 str. 40] Length = 690 Score = 42.1 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ R I +G R+L ++ + A + Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619 L+++ + + +A+AI + +++ Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690 >gi|38258795|sp|Q8G1L5|UVRC_BRUSU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|23347500|gb|AAN29628.1| excinuclease ABC, C subunit [Brucella suis 1330] Length = 611 Score = 42.1 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ R I +G R+L ++ + A + Sbjct: 538 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 587 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619 L+++ + + +A+AI + +++ Sbjct: 588 EDLMQIDGISEAMARAIHDHFRDK 611 >gi|256113234|ref|ZP_05454102.1| excinuclease ABC subunit C [Brucella melitensis bv. 3 str. Ether] gi|265994646|ref|ZP_06107203.1| UvrABC system protein C [Brucella melitensis bv. 3 str. Ether] gi|262765759|gb|EEZ11548.1| UvrABC system protein C [Brucella melitensis bv. 3 str. Ether] Length = 685 Score = 42.1 bits (97), Expect = 0.38, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 10/61 (16%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I +G R+L ++ + A + L+++ + + +A+AI + +++ Sbjct: 635 IAGIGPTRKRALLHHFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 684 Query: 619 P 619 Sbjct: 685 K 685 >gi|237815150|ref|ZP_04594148.1| excinuclease ABC, C subunit [Brucella abortus str. 2308 A] gi|237789987|gb|EEP64197.1| excinuclease ABC, C subunit [Brucella abortus str. 2308 A] Length = 702 Score = 42.1 bits (97), Expect = 0.38, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 10/61 (16%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I +G R+L ++ + A + L+++ + + +A+AI + +++ Sbjct: 652 IAGIGPTRKRALLHHFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 701 Query: 619 P 619 Sbjct: 702 K 702 >gi|225852219|ref|YP_002732452.1| excinuclease ABC subunit C [Brucella melitensis ATCC 23457] gi|256264273|ref|ZP_05466805.1| excinuclease ABC subunit C [Brucella melitensis bv. 2 str. 63/9] gi|225640584|gb|ACO00498.1| excinuclease ABC, C subunit [Brucella melitensis ATCC 23457] gi|263094533|gb|EEZ18342.1| excinuclease ABC subunit C [Brucella melitensis bv. 2 str. 63/9] gi|326408718|gb|ADZ65783.1| excinuclease ABC subunit C [Brucella melitensis M28] gi|326538442|gb|ADZ86657.1| excinuclease ABC, C subunit [Brucella melitensis M5-90] Length = 685 Score = 42.1 bits (97), Expect = 0.38, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 10/61 (16%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I +G R+L ++ + A + L+++ + + +A+AI + +++ Sbjct: 635 IAGIGPTRKRALLHHFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 684 Query: 619 P 619 Sbjct: 685 K 685 >gi|161611214|ref|YP_221454.2| excinuclease ABC subunit C [Brucella abortus bv. 1 str. 9-941] gi|162002877|ref|YP_414162.2| excinuclease ABC subunit C [Brucella melitensis biovar Abortus 2308] gi|189023910|ref|YP_001934678.1| excinuclease ABC subunit C [Brucella abortus S19] gi|254688970|ref|ZP_05152224.1| excinuclease ABC subunit C [Brucella abortus bv. 6 str. 870] gi|254693452|ref|ZP_05155280.1| excinuclease ABC subunit C [Brucella abortus bv. 3 str. Tulya] gi|254697105|ref|ZP_05158933.1| excinuclease ABC subunit C [Brucella abortus bv. 2 str. 86/8/59] gi|254730000|ref|ZP_05188578.1| excinuclease ABC subunit C [Brucella abortus bv. 4 str. 292] gi|256257219|ref|ZP_05462755.1| excinuclease ABC subunit C [Brucella abortus bv. 9 str. C68] gi|260545588|ref|ZP_05821329.1| excinuclease ABC subunit C [Brucella abortus NCTC 8038] gi|260754460|ref|ZP_05866808.1| excinuclease ABC subunit C [Brucella abortus bv. 6 str. 870] gi|260757679|ref|ZP_05870027.1| excinuclease ABC subunit C [Brucella abortus bv. 4 str. 292] gi|260761506|ref|ZP_05873849.1| excinuclease ABC subunit C [Brucella abortus bv. 2 str. 86/8/59] gi|260883489|ref|ZP_05895103.1| UvrABC system protein C [Brucella abortus bv. 9 str. C68] gi|261213706|ref|ZP_05927987.1| excinuclease ABC subunit C [Brucella abortus bv. 3 str. Tulya] gi|297248068|ref|ZP_06931786.1| excinuclease ABC, C subunit [Brucella abortus bv. 5 str. B3196] gi|189019482|gb|ACD72204.1| excinuclease ABC subunit C [Brucella abortus S19] gi|260096995|gb|EEW80870.1| excinuclease ABC subunit C [Brucella abortus NCTC 8038] gi|260667997|gb|EEX54937.1| excinuclease ABC subunit C [Brucella abortus bv. 4 str. 292] gi|260671938|gb|EEX58759.1| excinuclease ABC subunit C [Brucella abortus bv. 2 str. 86/8/59] gi|260674568|gb|EEX61389.1| excinuclease ABC subunit C [Brucella abortus bv. 6 str. 870] gi|260873017|gb|EEX80086.1| UvrABC system protein C [Brucella abortus bv. 9 str. C68] gi|260915313|gb|EEX82174.1| excinuclease ABC subunit C [Brucella abortus bv. 3 str. Tulya] gi|297175237|gb|EFH34584.1| excinuclease ABC, C subunit [Brucella abortus bv. 5 str. B3196] Length = 690 Score = 42.1 bits (97), Expect = 0.38, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 10/61 (16%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I +G R+L ++ + A + L+++ + + +A+AI + +++ Sbjct: 640 IAGIGPTRKRALLHHFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 689 Query: 619 P 619 Sbjct: 690 K 690 >gi|17987534|ref|NP_540168.1| excinuclease ABC subunit C [Brucella melitensis bv. 1 str. 16M] gi|256044391|ref|ZP_05447295.1| excinuclease ABC subunit C [Brucella melitensis bv. 1 str. Rev.1] gi|260563743|ref|ZP_05834229.1| excinuclease ABC subunit C [Brucella melitensis bv. 1 str. 16M] gi|265990810|ref|ZP_06103367.1| UvrABC system protein C [Brucella melitensis bv. 1 str. Rev.1] gi|17983236|gb|AAL52432.1| excinuclease abc subunit c [Brucella melitensis bv. 1 str. 16M] gi|260153759|gb|EEW88851.1| excinuclease ABC subunit C [Brucella melitensis bv. 1 str. 16M] gi|263001594|gb|EEZ14169.1| UvrABC system protein C [Brucella melitensis bv. 1 str. Rev.1] Length = 685 Score = 42.1 bits (97), Expect = 0.38, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 10/61 (16%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I +G R+L ++ + A + L+++ + + +A+AI + +++ Sbjct: 635 IAGIGPTRKRALLHHFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 684 Query: 619 P 619 Sbjct: 685 K 685 >gi|75497050|sp|Q57E41|UVRC_BRUAB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|62195793|gb|AAX74093.1| UvrC, excinuclease ABC, C subunit [Brucella abortus bv. 1 str. 9-941] Length = 627 Score = 42.1 bits (97), Expect = 0.38, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 10/61 (16%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I +G R+L ++ + A + L+++ + + +A+AI + +++ Sbjct: 577 IAGIGPTRKRALLHHFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 626 Query: 619 P 619 Sbjct: 627 K 627 >gi|38258822|sp|Q8YGA9|UVRC_BRUME RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|90111059|sp|Q2YN35|UVRC_BRUA2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|82615689|emb|CAJ10676.1| Excinuclease ABC, C subunit, N-terminal:Helix-hairpin-helix motif:Excinuclease ABC, C subunit, C-terminal:UvrB/UvrC protein:H [Brucella melitensis biovar Abortus 2308] Length = 611 Score = 42.1 bits (97), Expect = 0.38, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 10/61 (16%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I +G R+L ++ + A + L+++ + + +A+AI + +++ Sbjct: 561 IAGIGPTRKRALLHHFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 610 Query: 619 P 619 Sbjct: 611 K 611 >gi|256425884|ref|YP_003126537.1| DNA protecting protein DprA [Chitinophaga pinensis DSM 2588] gi|256040792|gb|ACU64336.1| DNA protecting protein DprA [Chitinophaga pinensis DSM 2588] Length = 378 Score = 42.1 bits (97), Expect = 0.38, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 21/91 (23%) Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 L I I +G +A+ L ++ S L +P +G Sbjct: 9 MQEELRHQIALTQIPQIGDIVAKKLLAHFGSASEVLNASRK----------ELGNIPDIG 58 Query: 606 DIIAQAIVEF-----------YQNPRNICAV 625 + A AI +F + NI A+ Sbjct: 59 IVRADAIFQFRDYRKADKEIDFLEKHNIQAI 89 >gi|254168497|ref|ZP_04875341.1| ERCC4 domain protein [Aciduliprofundum boonei T469] gi|197622552|gb|EDY35123.1| ERCC4 domain protein [Aciduliprofundum boonei T469] Length = 221 Score = 42.1 bits (97), Expect = 0.38, Method: Composition-based stats. Identities = 20/155 (12%), Positives = 48/155 (30%), Gaps = 16/155 (10%) Query: 467 QQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA----DIFTLQRRQQTSTT 522 ++ L H D ++ G + + + I I D R Sbjct: 79 RRRALLIHGYMGDEISLSSFGWNHIMGAYMEIQYRYDIPIFHAEDDDALAEFFRILIKRE 138 Query: 523 KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582 G + + + + ++G +IA++L +++ S + A+ Sbjct: 139 TEGKNEGEFERKWMRIPPKRVMSDEE--WKIYALSSLPYIGEKIAKALLEHFGSIEKIAR 196 Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 + + L +V +G+ A+ I + Sbjct: 197 A----------NIVELKKVEGIGNKKARQIYRIFH 221 >gi|116070556|ref|ZP_01467825.1| excinuclease ABC subunit C [Synechococcus sp. BL107] gi|116065961|gb|EAU71718.1| excinuclease ABC subunit C [Synechococcus sp. BL107] Length = 661 Score = 42.1 bits (97), Expect = 0.39, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 12/76 (15%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I +GA+ R L ++ S +L + P VG ++AQ I F+ Sbjct: 590 DIPGLGAKRVRDLLSHFHSIDAIQLA----------SVDTLAKAPGVGPVLAQDIFNFFH 639 Query: 618 --NPRNICAVEALLKE 631 N N L + Sbjct: 640 PTNENNDSLPSHLEEH 655 >gi|300853933|ref|YP_003778917.1| putative DNA-binding competence protein [Clostridium ljungdahlii DSM 13528] gi|300434048|gb|ADK13815.1| predicted DNA-binding competence protein [Clostridium ljungdahlii DSM 13528] Length = 205 Score = 41.7 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%) Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 + + N L + VGD+ AQ I+++ + N ++E L K EK Sbjct: 141 DGRVNINKASKEELKTISGVGDVTAQKIIDYREKNGNFSSIEDLKKVGRIGDKTIEKIKD 200 >gi|149375111|ref|ZP_01892883.1| Holliday junction DNA helicase motor protein [Marinobacter algicola DG893] gi|149360475|gb|EDM48927.1| Holliday junction DNA helicase motor protein [Marinobacter algicola DG893] Length = 210 Score = 41.7 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 24/127 (18%) Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 I D +L+++P VG A+ ++ + L + P+ Sbjct: 93 LDANQFIRCVEARDANALVKLPGVGKKTAERLL-----IEMTDRIGQLEGQFIPASPNAT 147 Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV---VSAILSRKTDIIIVGDNPGSK 697 S V G R +A+ + LG S +S+ + ++ S Sbjct: 148 VTSDSANAG---VVAG---HDPREEAEAALIALGYKPQEASKAISK-----VAEESMSS- 195 Query: 698 LEKAQQL 704 Q+L Sbjct: 196 ----QEL 198 >gi|312137159|ref|YP_004004496.1| dead/deah box helicase domain protein [Methanothermus fervidus DSM 2088] gi|311224878|gb|ADP77734.1| DEAD/DEAH box helicase domain protein [Methanothermus fervidus DSM 2088] Length = 730 Score = 41.7 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 10/57 (17%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + H+GA A+ L + + S +N L++V +G+ IA+ I E Sbjct: 676 SLPHIGAVNAKKLLRKFGSVKNVINASEK----------ELMKVEGIGEKIAKDIKE 722 >gi|118361897|ref|XP_001014176.1| hypothetical protein TTHERM_00224460 [Tetrahymena thermophila] gi|89295943|gb|EAR93931.1| hypothetical protein TTHERM_00224460 [Tetrahymena thermophila SB210] Length = 1096 Score = 41.7 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 36/402 (8%), Positives = 83/402 (20%), Gaps = 25/402 (6%) Query: 170 IPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN- 228 P+ Y + D + +N N Sbjct: 526 CQNTAETCLSCQPQQYLFNNSCYNTNPDGAYCQITNGLNYYTCQSCSQNCKVCTGTASNQ 585 Query: 229 PTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM 288 F+ + + + ++ + L NG Y + Sbjct: 586 CQQCFPQAYFYQNSCTLSQPLQTYCDSLLICQTCDLSCKYCNGPSSNECTQCFDGLYLNI 645 Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGER---ARSPRWMISHKFAEKQASTR-LLDIDI 344 K+ ST G + FS + ++ +TR + Sbjct: 646 KNGISTCQICQKGCSLCSNSFSNCSACQNPYYLNGNSCFLNCLSGKYFDLNTRDCEQCNN 705 Query: 345 QIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVK 404 Q + + I NA+L+N + G + ++ + Sbjct: 706 QC-------LTCSDKTNISCTSCIANASLNNNNQCICQKQGYGFSSDGTQ-CISCQLSMC 757 Query: 405 RAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG--- 461 + ++ I N + C + C+ Sbjct: 758 QTCQLSSICDRCIQNATLSTNSLGNQVCTCNEGYYYIKFYNKCIKCPQNHCQSCSSDGMT 817 Query: 462 ----LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS-----IRIPADIFT 512 L+ Q + + + Q + + I P I Sbjct: 818 CTKCLSGFQLQNGNCSYCNNNKFADSNNQCSQNCTELCQVCSNSNLCSVYDINNPDYIPN 877 Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + + + + ++ +I Sbjct: 878 QLCHFTCKQCSGLTVKDCLICASDSRQYNYETQQCECKSGYI 919 >gi|78212893|ref|YP_381672.1| excinuclease ABC subunit C [Synechococcus sp. CC9605] gi|119367855|sp|Q3AJW5|UVRC_SYNSC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|78197352|gb|ABB35117.1| excinuclease ABC, C subunit [Synechococcus sp. CC9605] Length = 661 Score = 41.7 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 10/60 (16%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I VG + + L ++ S +L + P VG +A+ I +F+ Sbjct: 589 DIPGVGPKRVKDLLAHFHSIDAIQLA----------SIETLSKAPGVGPALARDIHDFFH 638 >gi|332027308|gb|EGI67392.1| DNA topoisomerase II-binding protein 1 [Acromyrmex echinatior] Length = 1276 Score = 41.7 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 35/76 (46%), Gaps = 13/76 (17%) Query: 664 HKAQEYVTQL----GAVVS----AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + ++++ Q G + + + ++ ++ + +K EKA ++ + +M ++++ Sbjct: 125 AEIKDWIQQRVEYMGGIFTKQLRSSVT----HLVADNVMSAKYEKAVEMKIPVMT-KEWI 179 Query: 716 FLLQQYNTTLRIHDDD 731 + + N I DD Sbjct: 180 EAVWKANLKEVIKADD 195 >gi|300726678|ref|ZP_07060112.1| exonuclease family [Prevotella bryantii B14] gi|299776048|gb|EFI72624.1| exonuclease family [Prevotella bryantii B14] Length = 480 Score = 41.7 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 8/99 (8%) Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK-------IQRHKAQEYVTQLGAVVSAIL 681 LK + +S +KK+V TG + I R + GA + + Sbjct: 372 LKGDLLIKDLKNADPNSPYYDKKVVITGVFYQGADKQNVIDRIDIARQLKACGADIDLKV 431 Query: 682 SRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 S TD + VG G +KL ++ G+K + ++ L++ Sbjct: 432 SEATDFVFVGKEAGAAKLRNIKKYGIKTLGQKDVETLMK 470 >gi|159038878|ref|YP_001538131.1| excinuclease ABC subunit C [Salinispora arenicola CNS-205] gi|189038084|sp|A8LW31|UVRC_SALAI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|157917713|gb|ABV99140.1| excinuclease ABC, C subunit [Salinispora arenicola CNS-205] Length = 660 Score = 41.7 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 10/52 (19%) Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 ++L +++ S + A + VP +G A+AI+ +P Sbjct: 611 KALLRHFGSLKRLAAA----------SVEEITEVPGIGKRTAEAILAALADP 652 >gi|328721024|ref|XP_001944818.2| PREDICTED: hypothetical protein LOC100169197 [Acyrthosiphon pisum] Length = 626 Score = 41.7 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 36/99 (36%) Query: 667 QEYVTQLGAVVSAILSRKTDIII-------------------------VGDNPGSKLE-- 699 ++ + G + L + TD +I V + P SK + Sbjct: 48 EKLINSYGGKIIQSLEKSTDYLISDIIQNEGAKRSTSSETNNCKKDIEVKNGPSSKRKNS 107 Query: 700 -----KAQQLGVKIMNEEQF----LFLLQQYNTTLRIHD 729 KA L +KI++ ++F LL+++ T + D Sbjct: 108 VDLINKANILNIKILSAKKFQHWLKSLLKKHRTNKKPTD 146 >gi|322381153|ref|ZP_08055156.1| DisA-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154729|gb|EFX47000.1| DisA-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 359 Score = 41.7 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 19/51 (37%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 N ++ + L V +G++ A+AI E + + ++ Sbjct: 307 IGNLVEQFECLPHVMTATIEELDEVDGIGEVRARAIKEGLRRIQEQVLIDR 357 >gi|330799899|ref|XP_003287978.1| hypothetical protein DICPUDRAFT_55168 [Dictyostelium purpureum] gi|325082002|gb|EGC35499.1| hypothetical protein DICPUDRAFT_55168 [Dictyostelium purpureum] Length = 730 Score = 41.7 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%) Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + GA V ++ KT +I SK+ KA G+K+++ + + Sbjct: 472 LAEEFGASVENDITSKTTHVIAQRKGTSKVNKAISKGLKVVSPQWLVE 519 >gi|257052562|ref|YP_003130395.1| Hef nuclease [Halorhabdus utahensis DSM 12940] gi|256691325|gb|ACV11662.1| helicase domain protein [Halorhabdus utahensis DSM 12940] Length = 833 Score = 41.7 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 10/70 (14%) Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + + ++ I VG IAR+L +++ S Q L+ V V Sbjct: 766 SKTLPEQQAYVVASIADVGPVIARTLLEHFGSVQAVMTANE----------DDLLDVDGV 815 Query: 605 GDIIAQAIVE 614 G++ A+ I E Sbjct: 816 GEVTAERIRE 825 >gi|253698904|ref|YP_003020093.1| PHP domain protein [Geobacter sp. M21] gi|251773754|gb|ACT16335.1| PHP domain protein [Geobacter sp. M21] Length = 578 Score = 41.7 bits (96), Expect = 0.45, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 9/74 (12%) Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-----VSPS 635 + +L+ +P +G A+AI + Q I ++E L K + Sbjct: 75 MAAYEELKQEVPAGVFALLAIPDLGPKTAKAIYDALQ----IASIEELEKAALEHRLIGI 130 Query: 636 IGRHEKNVSSEIEN 649 G +K + ++ Sbjct: 131 KGIKQKTEENILKG 144 >gi|197116665|ref|YP_002137092.1| DNA polymerase IV domain-/PHP phosphoesterase domain-containing protein [Geobacter bemidjiensis Bem] gi|197086025|gb|ACH37296.1| DNA polymerase IV (family X) domain and PHP phosphoesterase domain protein PRK08609 [Geobacter bemidjiensis Bem] Length = 578 Score = 41.7 bits (96), Expect = 0.45, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 9/74 (12%) Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-----VSPS 635 + +L+ +P +G A+AI + Q I ++E L K + Sbjct: 75 MAAYEELKQEVPAGVFALLAIPDLGPKTAKAIYDALQ----IASIEELEKAALEHKLIGI 130 Query: 636 IGRHEKNVSSEIEN 649 G +K + ++ Sbjct: 131 KGIKQKTEENILKG 144 >gi|281349314|gb|EFB24898.1| hypothetical protein PANDA_009509 [Ailuropoda melanoleuca] Length = 256 Score = 41.7 bits (96), Expect = 0.45, Method: Composition-based stats. Identities = 18/216 (8%), Positives = 37/216 (17%) Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409 A ++ +H + L V+ + + Sbjct: 17 AHTHMHAHACTLHTCVCTHLYTYMHTYTHCAHLHTRTHVVSHTHTLHACTLAHMHTHARA 76 Query: 410 IPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 C + + + T V AH CT + + Sbjct: 77 HSCTHTHARTHTCTRVHTHVHAHTCTHVVAHIHMCAHMCTHMHVRAHTCTHAHIHACIHV 136 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529 H + L +S A + L T + Sbjct: 137 CTRAHLHTYTHARTHTCTHAHLHTCTRSCTCAHILAHMCTRTHLHTYTHAHTYLYTYLHT 196 Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 S + + + Sbjct: 197 CTHTCTHTHMPSTAAAPRQCTHAHLSIHIVYTCSHQ 232 >gi|149728671|ref|XP_001498255.1| PREDICTED: laminin, beta 2 (laminin S) [Equus caballus] Length = 1801 Score = 41.7 bits (96), Expect = 0.46, Method: Composition-based stats. Identities = 39/402 (9%), Positives = 72/402 (17%), Gaps = 16/402 (3%) Query: 208 VGRKPYANPRNAASGILRRLNPTDITRYLNF-FVHGLGKTSEIFAKGQYEMLQKMRCLGF 266 + +G + G G + + Sbjct: 900 RDHTGGEHCERCIAGFYGDPRLPYGGQCRPCPCPEGPGSRQHFATSCHQDGYSQQIVCHC 959 Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 + + P + G + +D + G+ R Sbjct: 960 RAGYTGLRCEACAPGHFGDP-SRPGGRCQPCECSGNIDPMDPDACDPHTGQCLRC-LHHT 1017 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386 Q +P N + L Sbjct: 1018 EGPHCAHCKPGFHGQAARQSCHRCTCNL-LGTDPQQCPSTDRCNCD-PSSGQCPCLPNVQ 1075 Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC-----QSRV 441 R +G R P F+ C S Sbjct: 1076 GPSCD----RCAPNFWNLASGHGCQPCACHPSRARGPTCNEFTGQCHCRAGFGGRTCSEC 1131 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 G A C + Q H R + + F Sbjct: 1132 QELHWGDPGLQCRACDCDPRGIDTPQCHRSTGHCSCRPGMSGVRCDQ-CARGFSGVFPAC 1190 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 + + Q + ++ T + + + E+ GI Sbjct: 1191 HPCHACFGDWD-RVVQDLAARTRRLEQRAQELQQTGVLGAFERSFWHMQEKLGTVQGIVG 1249 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 A S A++ + + +EI H L V Sbjct: 1250 ARNTSAASTAQFLEATEELRREIGEATEHLTQLEAELTDVQD 1291 >gi|74151355|dbj|BAE38800.1| unnamed protein product [Mus musculus] Length = 221 Score = 41.7 bits (96), Expect = 0.46, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 43/148 (29%), Gaps = 12/148 (8%) Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 S I Q + +F + + + + + + + S I + Sbjct: 83 SSHLQGIIIVEKTQMSEQYFPAVQKFTVLDLGMVLLPVASQSEASCLIIHLVQEQTREPS 142 Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 N + + L I VG AR L + + S Q +N Sbjct: 143 KNPFLRKKRSMLSELSLVQTVQQIPGVGKVKARLLLQKFPSIQQL----------SNASV 192 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNIC 623 L V VG AQ I F+ P+ Sbjct: 193 QELEEV--VGPAAAQQIHTFFTQPKRQQ 218 >gi|294496956|ref|YP_003560656.1| DNA integrity scanning protein DisA [Bacillus megaterium QM B1551] gi|295702323|ref|YP_003595398.1| DNA integrity scanning protein DisA [Bacillus megaterium DSM 319] gi|294346893|gb|ADE67222.1| DNA integrity scanning protein DisA [Bacillus megaterium QM B1551] gi|294799982|gb|ADF37048.1| DNA integrity scanning protein DisA [Bacillus megaterium DSM 319] Length = 359 Score = 41.7 bits (96), Expect = 0.47, Method: Composition-based stats. Identities = 20/190 (10%), Positives = 49/190 (25%), Gaps = 19/190 (10%) Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF-FKSEDPAFS 503 + + + + ++S + Q + E+ Sbjct: 180 EFEEQVTHTDVLQSLHRTEMVLRIKNEILSYISELGTEGRLIRLQMNELLSHLEEEATLL 239 Query: 504 IRIPADIFT------LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I+ + ++R QQ S + + + +Y S R + + Sbjct: 240 IKDYMYDLSFDPYRVIERMQQPSNNVLLDDQTLLRLMGYPMYTSFEDSVIPRGYRMLHKI 299 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 +N E+ ++ + L V +G+I A+ I E + Sbjct: 300 PRLPSII------------IENLIDELGDLKTIADASVEELDEVEGIGEIRARKIREGLK 347 Query: 618 NPRNICAVEA 627 + Sbjct: 348 RLKEQHLTNR 357 >gi|15896435|ref|NP_349784.1| DNA integrity scanning protein DisA [Clostridium acetobutylicum ATCC 824] gi|81529413|sp|Q97EC6|DISA_CLOAB RecName: Full=DNA integrity scanning protein disA gi|15026257|gb|AAK81124.1|AE007814_2 Predicted nucleic-acid-binding protein protein, containing HHH domain, YACK B.subtilis ortholog [Clostridium acetobutylicum ATCC 824] gi|325510592|gb|ADZ22228.1| nucleic-acid-binding protein protein, containing HHH domain, YACK [Clostridium acetobutylicum EA 2018] Length = 357 Score = 41.7 bits (96), Expect = 0.47, Method: Composition-based stats. Identities = 7/54 (12%), Positives = 19/54 (35%) Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 ++ +N + + L +V +G+ A+AI + + + Sbjct: 302 FIVIENLVKNFKELKKILEASHEDLDKVEGIGEARARAIKSGLRKLKEQTIIRK 355 >gi|296131790|ref|YP_003639037.1| DNA integrity scanning, DisA, linker region [Thermincola sp. JR] gi|296030368|gb|ADG81136.1| DNA integrity scanning, DisA, linker region [Thermincola potens JR] Length = 359 Score = 41.7 bits (96), Expect = 0.48, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 +N ++ N L V +G++ A+AI E + R+ ++ Sbjct: 306 IENLVNNFKSLQRILNASIEELDDVEGIGEVRARAIKEGLKRYRDQVLLDR 356 >gi|189499391|ref|YP_001958861.1| DNA protecting protein DprA [Chlorobium phaeobacteroides BS1] gi|189494832|gb|ACE03380.1| DNA protecting protein DprA [Chlorobium phaeobacteroides BS1] Length = 382 Score = 41.7 bits (96), Expect = 0.48, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 10/76 (13%) Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + +G R+L + + + +A +P +G +A+ Sbjct: 15 NLLVLSRVPGLGPARIRALKRQFGTSNAIFHADERALAV----------IPGIGRKLART 64 Query: 612 IVEFYQNPRNICAVEA 627 I +F+++PRN+ Sbjct: 65 ITDFFRSPRNLDLARK 80 >gi|288554698|ref|YP_003426633.1| DNA integrity scanning protein DisA [Bacillus pseudofirmus OF4] gi|288545858|gb|ADC49741.1| DNA integrity scanning protein DisA [Bacillus pseudofirmus OF4] Length = 357 Score = 41.7 bits (96), Expect = 0.49, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 34/120 (28%), Gaps = 10/120 (8%) Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567 D F R S T+ + + + + +S + I + I Sbjct: 246 QDEFDTLRELTKSQTEDLLDEHEIVKVLGYGKNVNVQEQAVSPRGYRILHRIPRLPPAII 305 Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 +L Y + + L V +G+ A+ I + Q + V+ Sbjct: 306 NNLIDKYGNLSSIMFA----------SIEELDEVEGIGEARAKMIKDGLQRIQEQLFVDR 355 >gi|113476857|ref|YP_722918.1| excinuclease ABC subunit C [Trichodesmium erythraeum IMS101] gi|119367860|sp|Q10Z79|UVRC_TRIEI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|110167905|gb|ABG52445.1| Excinuclease ABC subunit C [Trichodesmium erythraeum IMS101] Length = 622 Score = 41.7 bits (96), Expect = 0.49, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 10/92 (10%) Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 +L S ++ R + I +G + L ++ S Sbjct: 541 QLLRRLRDEAHRFAVSFHRDRRSQRMKRSRLDEIPGLGQHRQKLLLGHFHSVDYIRMAT- 599 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 L V VG +AQ I +++ Sbjct: 600 ---------VEQLAEVSGVGPKLAQQIYDYFH 622 >gi|300782145|ref|YP_003762436.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Amycolatopsis mediterranei U32] gi|299791659|gb|ADJ42034.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Amycolatopsis mediterranei U32] Length = 241 Score = 41.7 bits (96), Expect = 0.50, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 40/93 (43%) Query: 648 ENKKLVFTGTLQKIQRHK--AQEYVTQLG----------AVVSAI----LSR---KTDII 688 +V TG R + A+E +G A + +++ K DI+ Sbjct: 28 AGATVVLTG------RDEARAKEAAASVGASGLALDVTDAKAVSSLVRGVAKEHGKLDIV 81 Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 + N G IM E+ L ++++ Sbjct: 82 VA--NAG------------IM-EDALLGMIKEE 99 >gi|182420014|ref|ZP_02951248.1| DNA integrity scanning protein DisA [Clostridium butyricum 5521] gi|237666430|ref|ZP_04526415.1| DNA integrity scanning protein DisA [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376051|gb|EDT73638.1| DNA integrity scanning protein DisA [Clostridium butyricum 5521] gi|237657629|gb|EEP55184.1| DNA integrity scanning protein DisA [Clostridium butyricum E4 str. BoNT E BL5262] Length = 354 Score = 41.7 bits (96), Expect = 0.50, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 50/157 (31%), Gaps = 12/157 (7%) Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ-RRQQTSTTKIENILGFGDVSVTNLYDS 541 + + ++ + + + I + + R + GF V Sbjct: 196 VMRIVEEINMYILELGNEGRLISMQLNELVRHIERDGILLIQDYCAEGFEHNDVYEHIQR 255 Query: 542 INKRRNISLERFIFSLGIRHVG-------AEIARSLAK--YYLS--YQNFAQEINNIIAH 590 +N L+ +LG + + R L+K S +N +E ++ + Sbjct: 256 LNSSELPDLDAIAKTLGYGGIPLMDTLISPKGYRILSKVPRIPSNVIENLIKEFEDLSSI 315 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 D L +V +G+ A AI + + ++ Sbjct: 316 IEADIDDLDKVEGIGEARATAIKNGLKRIKEQVLLKK 352 >gi|167583617|ref|YP_001671807.1| NAD-dependent DNA ligase [Enterobacteria phage phiEco32] gi|164375455|gb|ABY52863.1| NAD-dependent DNA ligase [Enterobacteria phage phiEco32] Length = 109 Score = 41.7 bits (96), Expect = 0.50, Method: Composition-based stats. Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 3/55 (5%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 +S + +++ H YY PI D ++ + + +P+ Sbjct: 13 SEISPAEVINRH---RRQLIIHSYLYYWLDDPIWSDDKWQQVANDLVELQALYPE 64 >gi|72382264|ref|YP_291619.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str. NATL2A] gi|72002114|gb|AAZ57916.1| NAD-dependent DNA ligase N-terminus protein [Prochlorococcus marinus str. NATL2A] Length = 228 Score = 41.7 bits (96), Expect = 0.50, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 71/213 (33%), Gaps = 28/213 (13%) Query: 116 RFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR 175 R W + + LEPKI G++I I+Y G+ + +D++ +R++ TIP+ Sbjct: 43 REWLEIFLPNTRIILEPKIIGSIIGIQYINGELNKVIN----KNSQDITESVRSLKTIPK 98 Query: 176 VLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY 235 L++ + + + R + + N ++ Sbjct: 99 SLAI-------------------KNRLEIQGVLYDYKNLSTRKNETEFIDIQNFISKSKR 139 Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295 L F + Q K P + + + E K Sbjct: 140 LKFCAFQI--CQCNINHFQSLQELKHLNFEIPQTQFTNFISDIEIYIQCWREGKLFT--- 194 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 Y +GLV K++ LQK LGE S W + Sbjct: 195 SYPTNGLVLKINSRKLQKYLGENNLSIPWAYAI 227 >gi|298490257|ref|YP_003720434.1| excinuclease ABC subunit C ['Nostoc azollae' 0708] gi|298232175|gb|ADI63311.1| excinuclease ABC, C subunit ['Nostoc azollae' 0708] Length = 625 Score = 41.7 bits (96), Expect = 0.50, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 10/59 (16%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I +G + L ++ S Q + L V +G +A+ I +++ Sbjct: 575 IPGLGQHRQKLLLAHFRSIDYIRQATS----------QQLEEVQGIGMKLAKDIYDYFH 623 >gi|154284394|ref|XP_001542992.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150406633|gb|EDN02174.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 654 Score = 41.7 bits (96), Expect = 0.50, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 10/89 (11%) Query: 653 VFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKI 708 VF+G L + GA++S +S KT ++ G N +K+ +A + +KI Sbjct: 456 VFSGVLPLGTDTQNADISLWAKSFGAIISQKISSKTTHLVAGRNRTAKVREATRYPNIKI 515 Query: 709 MNEEQFL------FLLQQYNTTLRIHDDD 731 + + L L + + +H +D Sbjct: 516 VTVQWLLDSITQWKRLDEEPYLVPVHPED 544 >gi|302348720|ref|YP_003816358.1| Putative ski2-type helicase [Acidilobus saccharovorans 345-15] gi|302329132|gb|ADL19327.1| Putative ski2-type helicase [Acidilobus saccharovorans 345-15] Length = 724 Score = 41.7 bits (96), Expect = 0.51, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 11/74 (14%) Query: 554 IFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 + + I VG AR L + + ++ A L+R+P +G +I Sbjct: 647 LQLVEIPGVGRVRARRLYNAGFKTLESLATA----------SPQELLRIPGIGPATVASI 696 Query: 613 VEFYQNPRNICAVE 626 +EF+ +++ Sbjct: 697 LEFFGRKEEAASIK 710 >gi|326203335|ref|ZP_08193200.1| DNA integrity scanning, DisA, linker region [Clostridium papyrosolvens DSM 2782] gi|325986593|gb|EGD47424.1| DNA integrity scanning, DisA, linker region [Clostridium papyrosolvens DSM 2782] Length = 361 Score = 41.7 bits (96), Expect = 0.51, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 20/51 (39%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 +N E N+ L +V +G++ A++I E + ++ Sbjct: 307 MKNIIGEFQNLQGVVKASIEDLDKVEGIGEVRAKSITEGLSRIKEQTIMDK 357 >gi|55379620|ref|YP_137470.1| excinuclease ABC subunit C [Haloarcula marismortui ATCC 43049] gi|73920300|sp|Q5UY89|UVRC_HALMA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|55232345|gb|AAV47764.1| UvrABC system protein C [Haloarcula marismortui ATCC 43049] Length = 581 Score = 41.7 bits (96), Expect = 0.51, Method: Composition-based stats. Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 10/74 (13%) Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 ++ + + E + +G E + L + + S + + L Sbjct: 515 AVQYHQTLRDEVSTTLDDVPGIGPETRKRLLRRFGSVDSVRAASD----------EELTA 564 Query: 601 VPLVGDIIAQAIVE 614 + +G+ A+ I Sbjct: 565 IDGIGEQTAETIRT 578 >gi|332523820|ref|ZP_08400072.1| ComE operon protein 1 [Streptococcus porcinus str. Jelinkova 176] gi|332315084|gb|EGJ28069.1| ComE operon protein 1 [Streptococcus porcinus str. Jelinkova 176] Length = 228 Score = 41.3 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632 + + N + +++ I N L ++P +G+ A+ I++ ++ +E LLK Sbjct: 154 NFSTIDN--EIVDSKININVAKLEDLTKIPGIGEKRAKEIIDVRESQGGFKKLEDLLKIS 211 Query: 633 SPSIGRHEKNVS 644 EK Sbjct: 212 GIGKKTLEKLKD 223 >gi|302889251|ref|XP_003043511.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256724428|gb|EEU37798.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 765 Score = 41.3 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 40/94 (42%), Gaps = 18/94 (19%) Query: 640 EKNVSSEIENKKLVFTG------TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 ++ SS + +V +G +++ + GA V +S++ ++V Sbjct: 488 DELKSSVLSGLVIVLSGLVPLGVKVEE---SEIGMQAQSFGAQVLDTVSKRVTHLVV--- 541 Query: 694 PGS-----KLEKAQQL-GVKIMNEEQFLFLLQQY 721 S K+++A ++ +KI+N+ L Q+ Sbjct: 542 ASSRPRTKKVQQAAKIPSIKIVNQNWLTDCLSQW 575 >gi|156400174|ref|XP_001638875.1| predicted protein [Nematostella vectensis] gi|156225999|gb|EDO46812.1| predicted protein [Nematostella vectensis] Length = 968 Score = 41.3 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 40/92 (43%), Gaps = 10/92 (10%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII-----VGDNPGSKL 698 + N + G L++ + V QLG ++ K D I V K+ Sbjct: 336 GKPLSNMMVAVIGKLKR-TKADVASCVAQLGGTTMDRVTSKVDCCISTQAEV-SKSSKKM 393 Query: 699 EKAQQLGVKIMNEEQFLFLLQ--QYNTTLRIH 728 + A++ + +++E +FL ++ ++N+ + H Sbjct: 394 KDAEKFNIPVVSE-EFLDAIKDGEFNSNIAKH 424 >gi|170761011|ref|YP_001788290.1| putative comE operon protein 1 [Clostridium botulinum A3 str. Loch Maree] gi|169408000|gb|ACA56411.1| putative comE operon protein 1 [Clostridium botulinum A3 str. Loch Maree] Length = 202 Score = 41.3 bits (95), Expect = 0.53, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%) Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 ++ I N+ L +P +GD+ AQ I+++ + E L EK Sbjct: 137 VDGKIDLNSASKEELKSIPGIGDVTAQKILDYREKQGTFKNFEDLKAIGRIGDKTIEKIK 196 Query: 644 S 644 Sbjct: 197 E 197 >gi|148380929|ref|YP_001255470.1| putative comE operon protein 1 [Clostridium botulinum A str. ATCC 3502] gi|153930808|ref|YP_001385298.1| putative comE operon protein 1 [Clostridium botulinum A str. ATCC 19397] gi|153934900|ref|YP_001388706.1| putative comE operon protein 1 [Clostridium botulinum A str. Hall] gi|170754697|ref|YP_001782611.1| putative comE operon protein 1 [Clostridium botulinum B1 str. Okra] gi|148290413|emb|CAL84540.1| putative competence protein [Clostridium botulinum A str. ATCC 3502] gi|152926852|gb|ABS32352.1| putative comE operon protein 1 [Clostridium botulinum A str. ATCC 19397] gi|152930814|gb|ABS36313.1| putative comE operon protein 1 [Clostridium botulinum A str. Hall] gi|169119909|gb|ACA43745.1| putative comE operon protein 1 [Clostridium botulinum B1 str. Okra] Length = 202 Score = 41.3 bits (95), Expect = 0.53, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%) Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 ++ I N+ L +P +GD+ AQ I+++ + E L EK Sbjct: 137 VDGKIDLNSASKEELKSIPGIGDVTAQKILDYREKQGTFKNFEDLKAIGRIGDKTIEKIK 196 Query: 644 S 644 Sbjct: 197 E 197 >gi|153939089|ref|YP_001392254.1| putative comE operon protein 1 [Clostridium botulinum F str. Langeland] gi|152934985|gb|ABS40483.1| putative comE operon protein 1 [Clostridium botulinum F str. Langeland] gi|295320250|gb|ADG00628.1| putative comE operon protein 1 [Clostridium botulinum F str. 230613] Length = 202 Score = 41.3 bits (95), Expect = 0.53, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%) Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 ++ I N+ L +P +GD+ AQ I+++ + E L EK Sbjct: 137 VDGKIDLNSASKEELKSIPGIGDVTAQKILDYREKQGTFKNFEDLKAIGRIGDKTIEKIK 196 Query: 644 S 644 Sbjct: 197 E 197 >gi|308177691|ref|YP_003917097.1| excinuclease ABC subunit C [Arthrobacter arilaitensis Re117] gi|307745154|emb|CBT76126.1| excinuclease ABC subunit C [Arthrobacter arilaitensis Re117] Length = 647 Score = 41.3 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 10/83 (12%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 + ++ + I +G +L K++ S + Sbjct: 560 HRFAITFHRAKRAKSMISSDLDAIPGLGKSKQAALRKHFGSMKKIRAA----------SV 609 Query: 596 LSLIRVPLVGDIIAQAIVEFYQN 618 L+ VP VG+ +A +I + ++ Sbjct: 610 EELMDVPGVGEKLATSIKDSLED 632 >gi|206901843|ref|YP_002251194.1| excinuclease ABC, C subunit [Dictyoglomus thermophilum H-6-12] gi|226698348|sp|B5YF86|UVRC_DICT6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|206740946|gb|ACI20004.1| excinuclease ABC, C subunit [Dictyoglomus thermophilum H-6-12] Length = 599 Score = 41.3 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 10/60 (16%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I VG + + L + + + +N + L +VP + + IA+ I ++ + Sbjct: 548 IPGVGEKRMKILLEAFSTLENLKKA----------SLEDLKKVPGISEKIAEKIYLYFHD 597 >gi|260437054|ref|ZP_05790870.1| holliday junction DNA helicase RuvA [Butyrivibrio crossotus DSM 2876] gi|292810363|gb|EFF69568.1| holliday junction DNA helicase RuvA [Butyrivibrio crossotus DSM 2876] Length = 198 Score = 41.3 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 24/121 (19%) Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635 S + +A +DD + P +G AQ ++ I + L E Sbjct: 88 SILSVISPDELRLAVISDDVKKIQSAPGIGSKTAQKLI--------IELKDKLKIEDVVY 139 Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695 EK++ K + R +A + LG S +S +++ +N Sbjct: 140 DLHDEKDIV-----KSV----------RDEAVSALISLGYSNSESVSA-VSALVITENMT 183 Query: 696 S 696 S Sbjct: 184 S 184 >gi|400840|sp|P31669|PARP1_XENLA RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1; AltName: Full=NAD(+) ADP-ribosyltransferase 1; Short=ADPRT 1; AltName: Full=Poly[ADP-ribose] synthase 1 gi|1334661|emb|CAA78126.1| NAD(+) ADP-ribosyltransferase [Xenopus laevis] Length = 998 Score = 41.3 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 32/113 (28%) Query: 634 PSIGRHEK-NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685 P E + N K++ G L K + + + + LG V+ +S Sbjct: 360 PKPTVEETFPEGKPLTNTKVLLIGKLSK-NKDEVKTLIEGLGGKVAGSAHKANLCISTN- 417 Query: 686 DIIIVGD--NPGSKLE--KAQQLGVKIMNEEQFLF----------LLQQYNTT 724 + K+E KA V++++ + FL LL Q+ + Sbjct: 418 -----KEVKKMSKKMEEVKAA--NVRVVS-DDFLKEVESGKSVQELLSQFGIS 462 >gi|116672512|ref|YP_833445.1| DNA polymerase III subunit epsilon [Arthrobacter sp. FB24] gi|116612621|gb|ABK05345.1| DNA polymerase III, epsilon subunit [Arthrobacter sp. FB24] Length = 406 Score = 41.3 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 5/73 (6%) Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS---KLEKAQQLG 705 K+V TG + + R+ + + G V +++ +++ +P S K +KA+ G Sbjct: 334 GDKIVLTGEMSR-DRNDIEADLRAAGFVPHPAITKAVRLLVA-ADPDSLSGKAKKARSYG 391 Query: 706 VKIMNEEQFLFLL 718 + ++ E LL Sbjct: 392 IPVVGEPYLTTLL 404 >gi|323340653|ref|ZP_08080905.1| competence protein ComEA [Lactobacillus ruminis ATCC 25644] gi|323091776|gb|EFZ34396.1| competence protein ComEA [Lactobacillus ruminis ATCC 25644] Length = 250 Score = 41.3 bits (95), Expect = 0.57, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 22/62 (35%) Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 + I N L+++ +GD A I+ + Q N ++ L EK S Sbjct: 187 DGKINLNTASKEQLMQLTGIGDKKADEIIAYRQQNGNFKTIDDLKNVSGIGDKTFEKISS 246 Query: 645 SE 646 Sbjct: 247 QI 248 >gi|254423285|ref|ZP_05037003.1| excinuclease ABC, C subunit [Synechococcus sp. PCC 7335] gi|196190774|gb|EDX85738.1| excinuclease ABC, C subunit [Synechococcus sp. PCC 7335] Length = 631 Score = 41.3 bits (95), Expect = 0.57, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 10/92 (10%) Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 +L S ++++ ++ R I +G + L + S + Sbjct: 545 MLLRRLRDEAHRFAVSFHRKKRMTRMRRSRLEDIPGLGHNRRKQLLASFRSIDYIREASP 604 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 L V +G +A+ I E++ Sbjct: 605 K----------QLASVDGIGPQLAKQIYEYFH 626 >gi|218438532|ref|YP_002376861.1| excinuclease ABC subunit C [Cyanothece sp. PCC 7424] gi|218171260|gb|ACK69993.1| excinuclease ABC, C subunit [Cyanothece sp. PCC 7424] Length = 638 Score = 41.3 bits (95), Expect = 0.59, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 16/90 (17%) Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587 + + R L+ I LG + L ++ S Q Sbjct: 563 EAHRFAVSFHRQQRMKNSRRSRLDE-IPGLGFGRQ-----KQLLAHFHSVDYIRQAT--- 613 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 L+ V +G+ +AQ I ++ Sbjct: 614 -------IDQLMEVSGIGEQLAQEIYNYFH 636 >gi|159027472|emb|CAO89437.1| uvrC [Microcystis aeruginosa PCC 7806] Length = 625 Score = 41.3 bits (95), Expect = 0.59, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 16/90 (17%) Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587 + + K R L+ I LG + + L ++ S + Sbjct: 550 EAHRFAVSFHRQQRMQKSRRSRLDE-IPGLGFKRQ-----KDLLAHFHSLDYIREA---- 599 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 L +V +G+ +A+ I ++ Sbjct: 600 ------SLEQLQQVTGIGEQLAKEIYNYFH 623 >gi|269218452|ref|ZP_06162306.1| excinuclease ABC subunit C [Actinomyces sp. oral taxon 848 str. F0332] gi|269211563|gb|EEZ77903.1| excinuclease ABC subunit C [Actinomyces sp. oral taxon 848 str. F0332] Length = 734 Score = 41.3 bits (95), Expect = 0.59, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 20/41 (48%) Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 + + ++ L++VP +G +A+AIVE + + Sbjct: 692 KALLGSLGSLAKIKAASQEELLKVPGIGPALARAIVEHFAD 732 >gi|260434379|ref|ZP_05788349.1| excinuclease ABC, C subunit [Synechococcus sp. WH 8109] gi|260412253|gb|EEX05549.1| excinuclease ABC, C subunit [Synechococcus sp. WH 8109] Length = 661 Score = 41.3 bits (95), Expect = 0.59, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 10/60 (16%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I VG + + L ++ S +L + P VG +A+ I +F+ Sbjct: 589 DIPGVGPKRVKDLLAHFHSIDAIQLA----------SVETLSKAPGVGPALARDIHDFFH 638 >gi|255527259|ref|ZP_05394140.1| protein of unknown function DUF147 [Clostridium carboxidivorans P7] gi|296187238|ref|ZP_06855634.1| putative DNA integrity scanning protein [Clostridium carboxidivorans P7] gi|255509044|gb|EET85403.1| protein of unknown function DUF147 [Clostridium carboxidivorans P7] gi|296048109|gb|EFG87547.1| putative DNA integrity scanning protein [Clostridium carboxidivorans P7] Length = 357 Score = 41.3 bits (95), Expect = 0.59, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 19/51 (37%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 +N + + + L +V +G+ A+AI + R ++ Sbjct: 302 IENLVKNFKELKGAMEASYEQLDKVEGIGEARARAIKNGLRRLREQIMLDN 352 >gi|168179468|ref|ZP_02614132.1| putative comE operon protein 1 [Clostridium botulinum NCTC 2916] gi|168181663|ref|ZP_02616327.1| putative comE operon protein 1 [Clostridium botulinum Bf] gi|182669790|gb|EDT81766.1| putative comE operon protein 1 [Clostridium botulinum NCTC 2916] gi|182675190|gb|EDT87151.1| putative comE operon protein 1 [Clostridium botulinum Bf] Length = 202 Score = 41.3 bits (95), Expect = 0.59, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 22/60 (36%) Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 + I N+ L +P +GD+ AQ I+++ + E L EK Sbjct: 138 DGKIDLNSASKEELKSIPGIGDVTAQKILDYREKQGTFKNFEDLKAIGRIGDKTIEKIKE 197 >gi|237796430|ref|YP_002863982.1| putative comE operon protein 1 [Clostridium botulinum Ba4 str. 657] gi|229261260|gb|ACQ52293.1| putative comE operon protein 1 [Clostridium botulinum Ba4 str. 657] Length = 202 Score = 41.3 bits (95), Expect = 0.60, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 22/60 (36%) Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 + I N+ L +P +GD+ AQ I+++ + E L EK Sbjct: 138 DGKIDLNSASKEELKSIPGIGDVTAQKILDYREKQGTFKNFEDLKAIGRIGDKTIEKIKE 197 >gi|242398676|ref|YP_002994100.1| ATP-dependent RNA helicase, putative [Thermococcus sibiricus MM 739] gi|242265069|gb|ACS89751.1| ATP-dependent RNA helicase, putative [Thermococcus sibiricus MM 739] Length = 772 Score = 41.3 bits (95), Expect = 0.60, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 10/56 (17%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 G+ +V A +AR L K++ + + + LI+V +G+ IA+ I Sbjct: 716 GLPNVSAVLARRLLKHFGNVERVFTAKES----------ELIQVEGIGEKIAKEIR 761 >gi|226950402|ref|YP_002805493.1| putative comE operon protein 1 [Clostridium botulinum A2 str. Kyoto] gi|226844593|gb|ACO87259.1| putative comE operon protein 1 [Clostridium botulinum A2 str. Kyoto] gi|322807301|emb|CBZ04875.1| late competence protein ComEA, DNA receptor [Clostridium botulinum H04402 065] Length = 202 Score = 41.3 bits (95), Expect = 0.60, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 22/60 (36%) Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 + I N+ L +P +GD+ AQ I+++ + E L EK Sbjct: 138 DGKIDLNSASKEELKSIPGIGDVTAQKILDYREKQGTFKNFEDLKAIGRIGDKTIEKIKE 197 >gi|166362764|ref|YP_001655037.1| excinuclease ABC subunit C [Microcystis aeruginosa NIES-843] gi|189038065|sp|B0JFQ0|UVRC_MICAN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|166085137|dbj|BAF99844.1| excinuclease ABC subunit C [Microcystis aeruginosa NIES-843] Length = 625 Score = 41.3 bits (95), Expect = 0.60, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 16/90 (17%) Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587 + + K R L+ I LG + + L ++ S + Sbjct: 550 EAHRFAVSFHRQQRMQKSRRSRLDE-IPGLGFKRQ-----KELLAHFHSLDYIREA---- 599 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 L +V +G+ +A+ I ++ Sbjct: 600 ------SLEQLQQVTGIGEQLAKEIYNYFH 623 >gi|218883987|ref|YP_002428369.1| ERCC4 domain protein [Desulfurococcus kamchatkensis 1221n] gi|218765603|gb|ACL11002.1| ERCC4 domain protein [Desulfurococcus kamchatkensis 1221n] Length = 238 Score = 41.3 bits (95), Expect = 0.61, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 10/89 (11%) Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 +Y +++ + ++ I + +G +AR L + + +N A + Sbjct: 152 RTEEKRVYRMRVEKKPMDIQERILYVAESIIGPVLARKLLARFKTLKNLANASKH----- 206 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 L+ V +G+ A+ I + P Sbjct: 207 -----ELLSVEGIGEKRAEEIYLLFNTPW 230 >gi|282901037|ref|ZP_06308970.1| Excinuclease ABC, C subunit [Cylindrospermopsis raciborskii CS-505] gi|281194128|gb|EFA69092.1| Excinuclease ABC, C subunit [Cylindrospermopsis raciborskii CS-505] Length = 631 Score = 41.3 bits (95), Expect = 0.62, Method: Composition-based stats. Identities = 11/92 (11%), Positives = 27/92 (29%), Gaps = 10/92 (10%) Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 +L ++++ + + I +G + L ++ + Q Sbjct: 549 QLLRRLRDEAHRFAIGFHRQQRSNQWQRSCLDEIPGLGVHRQKLLLAHFRTIDYIRQAT- 607 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 L P +G +AQ I ++ Sbjct: 608 ---------VQQLAEAPGIGLKLAQQIFAYFH 630 >gi|126657460|ref|ZP_01728616.1| excinuclease ABC subunit C [Cyanothece sp. CCY0110] gi|126621164|gb|EAZ91877.1| excinuclease ABC subunit C [Cyanothece sp. CCY0110] Length = 610 Score = 41.3 bits (95), Expect = 0.62, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 16/90 (17%) Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587 + + K R+ LE I LG + L ++ S + Sbjct: 535 EAHRFAVTFHRQQRLKKSRHSRLED-IPGLGFHRQ-----KQLLAHFHSIDYIREA---- 584 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 L V +G +A I +++ Sbjct: 585 ------SIEKLQEVSGIGQALATEIYDYFH 608 >gi|332816911|ref|XP_003309859.1| PREDICTED: LOW QUALITY PROTEIN: laminin subunit beta-2-like [Pan troglodytes] Length = 1792 Score = 41.3 bits (95), Expect = 0.63, Method: Composition-based stats. Identities = 48/494 (9%), Positives = 86/494 (17%), Gaps = 59/494 (11%) Query: 157 GHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN--------DEMIAV 208 G G C E K L + Sbjct: 801 GVVGRRCDLCAPGYYGFGPTGCQACQCSHEGALSSLCEKTSGQCLCRTGAFGLRCDRCQR 860 Query: 209 GRKPYANPRNAAS------------GILRRLNPTDITRYLNFF---------VHGLGKTS 247 G+ + + R L + T +G Sbjct: 861 GQWGFPSCRPCVCNGHADECNTHTGACLGCRDHTGGEHCERCIAGFHGDPRLPYGGQCRP 920 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE----------MKSIRSTLPY 297 +G + + G E + Sbjct: 921 CPCPEGPGSQRHFATSCHRDEYSQQIVCHCRAGYTGLRCEACAPGHFGDPSRPGGRCQLC 980 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 + G + +D + G+ R Q Sbjct: 981 ECSGNIDPMDPDACDPHTGQCLRC-LHHTEGPHCAHCKPGFHGQAARQSCHR-------- 1031 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI---RVGDRVLVKRAGEVIPKVV 414 N+ G ++ + + + R +G Sbjct: 1032 -CTCNLLGTNPQQCPSPDQCHCDPSSGQCPCLPNVQGPSCDRCAPNFWNLTSGHGCQPCA 1090 Query: 415 DIIVNERHPDAQPFSFPSFCPIC-----QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 R P F+ C S G A C + Q Sbjct: 1091 CHPSRARGPTCNEFTGQCHCRAGFGGRTCSECQELHWGDPGLQCRACDCDSRGIDTPQCH 1150 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529 H R + + F + + Q + Sbjct: 1151 RFTGHCSCRPGVSGVRCDQ-CARGFSGIFPACHPCHACFGDWD-RVVQDLAARTRRLEQR 1208 Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 ++ T + + E+ GI A S A+ + + +EI Sbjct: 1209 AQELQQTGVLGAFESSFWHMQEKLGIVQGIVGARNTSAASTAQLVEATEELRREIEEATE 1268 Query: 590 HNNDDWLSLIRVPL 603 H L V Sbjct: 1269 HLTQLEAELTDVQD 1282 >gi|328760529|gb|EGF74097.1| excinuclease ABC subunit C [Propionibacterium acnes HL099PA1] Length = 672 Score = 41.3 bits (95), Expect = 0.63, Method: Composition-based stats. Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 10/91 (10%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 + ++ + G+ +G ++L ++ S ++ + Sbjct: 576 HRFAITFHRSKRSKAMVESVLDGVSGLGETRRKALVSHFGSVRSLRKAT----------V 625 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 ++ VP G +A +V + A+ Sbjct: 626 DDIVEVPGFGPKLAGEVVAALSQDKPAEAIN 656 >gi|327330672|gb|EGE72418.1| excinuclease ABC subunit C [Propionibacterium acnes HL097PA1] Length = 672 Score = 41.3 bits (95), Expect = 0.63, Method: Composition-based stats. Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 10/91 (10%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 + ++ + G+ +G ++L ++ S ++ + Sbjct: 576 HRFAITFHRSKRSKAMVESVLDGVSGLGETRRKALVSHFGSVRSLRKAT----------V 625 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 ++ VP G +A +V + A+ Sbjct: 626 DDIVEVPGFGPKLAGEVVAALSQDKPAEAIN 656 >gi|314987670|gb|EFT31761.1| excinuclease ABC subunit C [Propionibacterium acnes HL005PA2] gi|314990150|gb|EFT34241.1| excinuclease ABC subunit C [Propionibacterium acnes HL005PA3] Length = 672 Score = 41.3 bits (95), Expect = 0.63, Method: Composition-based stats. Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 10/91 (10%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 + ++ + G+ +G ++L ++ S ++ + Sbjct: 576 HRFAITFHRSKRSKAMVESVLDGVSGLGETRRKALVSHFGSVRSLRKAT----------V 625 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 ++ VP G +A +V + A+ Sbjct: 626 DDIVEVPGFGPKLAGEVVAALSQDKPAEAIN 656 >gi|313838516|gb|EFS76230.1| excinuclease ABC subunit C [Propionibacterium acnes HL086PA1] Length = 672 Score = 41.3 bits (95), Expect = 0.63, Method: Composition-based stats. Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 10/91 (10%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 + ++ + G+ +G ++L ++ S ++ + Sbjct: 576 HRFAITFHRSKRSKAMVESVLDGVSGLGETRRKALVSHFGSVRSLRKAT----------V 625 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 ++ VP G +A +V + A+ Sbjct: 626 DDIVEVPGFGPKLAGEVVAALSQDKPAEAIN 656 >gi|313802189|gb|EFS43421.1| excinuclease ABC subunit C [Propionibacterium acnes HL110PA2] Length = 672 Score = 41.3 bits (95), Expect = 0.63, Method: Composition-based stats. Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 10/91 (10%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 + ++ + G+ +G ++L ++ S ++ + Sbjct: 576 HRFAITFHRSKRSKAMVESVLDGVSGLGETRRKALVSHFGSVRSLRKAT----------V 625 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 ++ VP G +A +V + A+ Sbjct: 626 DDIVEVPGFGPKLAGEVVAALSQDKPAEAIN 656 >gi|289426287|ref|ZP_06428033.1| excinuclease ABC, C subunit [Propionibacterium acnes SK187] gi|289153452|gb|EFD02167.1| excinuclease ABC, C subunit [Propionibacterium acnes SK187] Length = 672 Score = 41.3 bits (95), Expect = 0.63, Method: Composition-based stats. Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 10/91 (10%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 + ++ + G+ +G ++L ++ S ++ + Sbjct: 576 HRFAITFHRSKRSKAMVESVLDGVSGLGETRRKALVSHFGSVRSLRKAT----------V 625 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 ++ VP G +A +V + A+ Sbjct: 626 DDIVEVPGFGPKLAGEVVAALSQDKPAEAIN 656 >gi|224047277|ref|XP_002194832.1| PREDICTED: poly (ADP-ribose) polymerase family, member 1 [Taeniopygia guttata] Length = 1135 Score = 41.3 bits (95), Expect = 0.63, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 13/80 (16%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT-------DIIIVGDNPGS 696 + N K++ G L K + + + V LG ++ ++ T D+ + Sbjct: 508 DKPLTNMKILVVGKLSK-NKEEVKSIVEDLGGKMTTTANKATLCISTQKDV----EKMSK 562 Query: 697 KLEKAQQLGVKIMNEEQFLF 716 K+E+ ++ V++++E FL Sbjct: 563 KMEEVKEAKVRVVSEA-FLQ 581 >gi|289427080|ref|ZP_06428796.1| excinuclease ABC, C subunit [Propionibacterium acnes J165] gi|295130383|ref|YP_003581046.1| excinuclease ABC, C subunit [Propionibacterium acnes SK137] gi|289159549|gb|EFD07737.1| excinuclease ABC, C subunit [Propionibacterium acnes J165] gi|291375448|gb|ADD99302.1| excinuclease ABC, C subunit [Propionibacterium acnes SK137] gi|313764678|gb|EFS36042.1| excinuclease ABC subunit C [Propionibacterium acnes HL013PA1] gi|313772464|gb|EFS38430.1| excinuclease ABC subunit C [Propionibacterium acnes HL074PA1] gi|313791727|gb|EFS39838.1| excinuclease ABC subunit C [Propionibacterium acnes HL110PA1] gi|313807298|gb|EFS45785.1| excinuclease ABC subunit C [Propionibacterium acnes HL087PA2] gi|313809805|gb|EFS47526.1| excinuclease ABC subunit C [Propionibacterium acnes HL083PA1] gi|313815745|gb|EFS53459.1| excinuclease ABC subunit C [Propionibacterium acnes HL059PA1] gi|313818344|gb|EFS56058.1| excinuclease ABC subunit C [Propionibacterium acnes HL046PA2] gi|313820106|gb|EFS57820.1| excinuclease ABC subunit C [Propionibacterium acnes HL036PA1] gi|313823085|gb|EFS60799.1| excinuclease ABC subunit C [Propionibacterium acnes HL036PA2] gi|313825639|gb|EFS63353.1| excinuclease ABC subunit C [Propionibacterium acnes HL063PA1] gi|313830718|gb|EFS68432.1| excinuclease ABC subunit C [Propionibacterium acnes HL007PA1] gi|313833936|gb|EFS71650.1| excinuclease ABC subunit C [Propionibacterium acnes HL056PA1] gi|314915173|gb|EFS79004.1| excinuclease ABC subunit C [Propionibacterium acnes HL005PA4] gi|314918373|gb|EFS82204.1| excinuclease ABC subunit C [Propionibacterium acnes HL050PA1] gi|314919862|gb|EFS83693.1| excinuclease ABC subunit C [Propionibacterium acnes HL050PA3] gi|314925334|gb|EFS89165.1| excinuclease ABC subunit C [Propionibacterium acnes HL036PA3] gi|314931877|gb|EFS95708.1| excinuclease ABC subunit C [Propionibacterium acnes HL067PA1] gi|314956035|gb|EFT00433.1| excinuclease ABC subunit C [Propionibacterium acnes HL027PA1] gi|314958429|gb|EFT02532.1| excinuclease ABC subunit C [Propionibacterium acnes HL002PA1] gi|314960220|gb|EFT04322.1| excinuclease ABC subunit C [Propionibacterium acnes HL002PA2] gi|314963026|gb|EFT07126.1| excinuclease ABC subunit C [Propionibacterium acnes HL082PA1] gi|314968143|gb|EFT12242.1| excinuclease ABC subunit C [Propionibacterium acnes HL037PA1] gi|314973144|gb|EFT17240.1| excinuclease ABC subunit C [Propionibacterium acnes HL053PA1] gi|314976313|gb|EFT20408.1| excinuclease ABC subunit C [Propionibacterium acnes HL045PA1] gi|314978206|gb|EFT22300.1| excinuclease ABC subunit C [Propionibacterium acnes HL072PA2] gi|314983478|gb|EFT27570.1| excinuclease ABC subunit C [Propionibacterium acnes HL005PA1] gi|315077671|gb|EFT49727.1| excinuclease ABC subunit C [Propionibacterium acnes HL053PA2] gi|315080275|gb|EFT52251.1| excinuclease ABC subunit C [Propionibacterium acnes HL078PA1] gi|315084537|gb|EFT56513.1| excinuclease ABC subunit C [Propionibacterium acnes HL027PA2] gi|315085874|gb|EFT57850.1| excinuclease ABC subunit C [Propionibacterium acnes HL002PA3] gi|315088709|gb|EFT60685.1| excinuclease ABC subunit C [Propionibacterium acnes HL072PA1] gi|315096339|gb|EFT68315.1| excinuclease ABC subunit C [Propionibacterium acnes HL038PA1] gi|315098318|gb|EFT70294.1| excinuclease ABC subunit C [Propionibacterium acnes HL059PA2] gi|315100987|gb|EFT72963.1| excinuclease ABC subunit C [Propionibacterium acnes HL046PA1] gi|315108269|gb|EFT80245.1| excinuclease ABC subunit C [Propionibacterium acnes HL030PA2] gi|327325972|gb|EGE67762.1| excinuclease ABC subunit C [Propionibacterium acnes HL096PA2] gi|327332157|gb|EGE73894.1| excinuclease ABC subunit C [Propionibacterium acnes HL096PA3] gi|327442778|gb|EGE89432.1| excinuclease ABC subunit C [Propionibacterium acnes HL013PA2] gi|327446148|gb|EGE92802.1| excinuclease ABC subunit C [Propionibacterium acnes HL043PA2] gi|327447873|gb|EGE94527.1| excinuclease ABC subunit C [Propionibacterium acnes HL043PA1] gi|327451000|gb|EGE97654.1| excinuclease ABC subunit C [Propionibacterium acnes HL087PA3] gi|327452921|gb|EGE99575.1| excinuclease ABC subunit C [Propionibacterium acnes HL092PA1] gi|327453651|gb|EGF00306.1| excinuclease ABC subunit C [Propionibacterium acnes HL083PA2] gi|328753031|gb|EGF66647.1| excinuclease ABC subunit C [Propionibacterium acnes HL087PA1] gi|328753688|gb|EGF67304.1| excinuclease ABC subunit C [Propionibacterium acnes HL020PA1] gi|328759223|gb|EGF72839.1| excinuclease ABC subunit C [Propionibacterium acnes HL025PA2] gi|332675222|gb|AEE72038.1| UvrABC system protein C [Propionibacterium acnes 266] Length = 672 Score = 41.3 bits (95), Expect = 0.63, Method: Composition-based stats. Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 10/91 (10%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 + ++ + G+ +G ++L ++ S ++ + Sbjct: 576 HRFAITFHRSKRSKAMVESVLDGVSGLGETRRKALVSHFGSVRSLRKAT----------V 625 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 ++ VP G +A +V + A+ Sbjct: 626 DDIVEVPGFGPKLAGEVVAALSQDKPAEAIN 656 >gi|119370546|sp|Q6A9J8|UVRC_PROAC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|313813155|gb|EFS50869.1| excinuclease ABC subunit C [Propionibacterium acnes HL025PA1] gi|315107006|gb|EFT78982.1| excinuclease ABC subunit C [Propionibacterium acnes HL030PA1] Length = 672 Score = 41.3 bits (95), Expect = 0.63, Method: Composition-based stats. Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 10/91 (10%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 + ++ + G+ +G ++L ++ S ++ + Sbjct: 576 HRFAITFHRSKRSKAMVESVLDGVSGLGETRRKALVSHFGSVRSLRKAT----------V 625 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 ++ VP G +A +V + A+ Sbjct: 626 DDIVEVPGFGPKLAGEVVAALSQDKPAEAIN 656 >gi|50842299|ref|YP_055526.1| excinuclease ABC subunit C [Propionibacterium acnes KPA171202] gi|50839901|gb|AAT82568.1| excinuclease ABC subunit C [Propionibacterium acnes KPA171202] Length = 686 Score = 41.3 bits (95), Expect = 0.63, Method: Composition-based stats. Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 10/91 (10%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 + ++ + G+ +G ++L ++ S ++ + Sbjct: 590 HRFAITFHRSKRSKAMVESVLDGVSGLGETRRKALVSHFGSVRSLRKAT----------V 639 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 ++ VP G +A +V + A+ Sbjct: 640 DDIVEVPGFGPKLAGEVVAALSQDKPAEAIN 670 >gi|332559548|ref|ZP_08413870.1| excinuclease ABC subunit C [Rhodobacter sphaeroides WS8N] gi|332277260|gb|EGJ22575.1| excinuclease ABC subunit C [Rhodobacter sphaeroides WS8N] Length = 618 Score = 41.3 bits (95), Expect = 0.64, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 10/77 (12%) Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 ++ + I VGA R+L ++ S + A+ L Sbjct: 550 GAHRAKRAKAVSATPLDEIPGVGAARKRALLAHFGSAKAVARA----------GVPDLCA 599 Query: 601 VPLVGDIIAQAIVEFYQ 617 V + + +AQ+I +++ Sbjct: 600 VEGISETMAQSIHDYFH 616 >gi|326427960|gb|EGD73530.1| hypothetical protein PTSG_12278 [Salpingoeca sp. ATCC 50818] Length = 2164 Score = 41.3 bits (95), Expect = 0.64, Method: Composition-based stats. Identities = 7/45 (15%), Positives = 16/45 (35%) Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 + K + + + TG + + ++ V LG V + Sbjct: 1923 PPSKRAKMDTEPLAGFHVALTGDWDEFTDEELKDLVQSLGGTVLS 1967 >gi|221640567|ref|YP_002526829.1| excinuclease ABC subunit C [Rhodobacter sphaeroides KD131] gi|221161348|gb|ACM02328.1| UvrABC system protein C [Rhodobacter sphaeroides KD131] Length = 607 Score = 41.3 bits (95), Expect = 0.64, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 10/77 (12%) Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 ++ + I VGA R+L ++ S + A+ L Sbjct: 539 GAHRAKRAKAVSATPLDEIPGVGAARKRALLAHFGSAKAVARA----------GVPDLCA 588 Query: 601 VPLVGDIIAQAIVEFYQ 617 V + + +AQ+I +++ Sbjct: 589 VEGISETMAQSIHDYFH 605 >gi|973304|gb|AAC44002.1| exinuclease ABC subunit C [Rhodobacter sphaeroides] Length = 128 Score = 41.3 bits (95), Expect = 0.64, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 10/77 (12%) Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 ++ + I VGA R+L ++ S + A+ L Sbjct: 60 GAHRAKRAKAVSATPLDEIPGVGAARKRALLAHFGSAKAVARA----------GVPDLCA 109 Query: 601 VPLVGDIIAQAIVEFYQ 617 V + + +AQ+I +++ Sbjct: 110 VEGISETMAQSIHDYFH 126 >gi|77464655|ref|YP_354159.1| excinuclease ABC subunit C [Rhodobacter sphaeroides 2.4.1] gi|90111760|sp|Q3IYX6|UVRC_RHOS4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|77389073|gb|ABA80258.1| Excinuclease ABC subunit C [Rhodobacter sphaeroides 2.4.1] Length = 623 Score = 41.3 bits (95), Expect = 0.64, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 10/77 (12%) Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 ++ + I VGA R+L ++ S + A+ L Sbjct: 555 GAHRAKRAKAVSATPLDEIPGVGAARKRALLAHFGSAKAVARA----------GVPDLCA 604 Query: 601 VPLVGDIIAQAIVEFYQ 617 V + + +AQ+I +++ Sbjct: 605 VEGISETMAQSIHDYFH 621 >gi|253996889|ref|YP_003048953.1| competence protein ComEA helix-hairpin-helix repeat-containing protein [Methylotenera mobilis JLW8] gi|253983568|gb|ACT48426.1| competence protein ComEA helix-hairpin-helix repeat protein [Methylotenera mobilis JLW8] Length = 210 Score = 41.3 bits (95), Expect = 0.65, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 1/76 (1%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPS 635 + F+ + N L + +G + AQAI+++ + N +V+ L K + Sbjct: 11 FLGFSISALAAVNINTATQAELESLNGIGPVKAQAIIDYRKKNGNFKSVDDLEKVNGVGA 70 Query: 636 IGRHEKNVSSEIENKK 651 I K Sbjct: 71 ATLQSVRKDVSISGKS 86 >gi|148643247|ref|YP_001273760.1| Hef nuclease [Methanobrevibacter smithii ATCC 35061] gi|222445478|ref|ZP_03607993.1| hypothetical protein METSMIALI_01117 [Methanobrevibacter smithii DSM 2375] gi|261349960|ref|ZP_05975377.1| putative ATP-dependent RNA helicase [Methanobrevibacter smithii DSM 2374] gi|148552264|gb|ABQ87392.1| ERCC4-like helicase [Methanobrevibacter smithii ATCC 35061] gi|222435043|gb|EEE42208.1| hypothetical protein METSMIALI_01117 [Methanobrevibacter smithii DSM 2375] gi|288860743|gb|EFC93041.1| putative ATP-dependent RNA helicase [Methanobrevibacter smithii DSM 2374] Length = 772 Score = 41.3 bits (95), Expect = 0.65, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 18/111 (16%) Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL-GIRHVGAEIARSLAKYYL 575 Q T+ + T + +K+ E+ +F + + ++G A++L +++ Sbjct: 665 QDTAAMIKRIAIREQSGEKTPIQIRTDKKPVNLWEQQLFIIESLPNIGPVNAKNLLEHFG 724 Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE-------FYQNP 619 + N + L V +G A I + ++QN Sbjct: 725 TVANIINASES----------QLQEVEGIGKKTAANIRKVVDSKYLYFQNE 765 >gi|242309633|ref|ZP_04808788.1| competence protein ComEA [Helicobacter pullorum MIT 98-5489] gi|239523634|gb|EEQ63500.1| competence protein ComEA [Helicobacter pullorum MIT 98-5489] Length = 94 Score = 41.3 bits (95), Expect = 0.66, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 + N L+ + +G+ AQAI+++ + + +++ L EK S Sbjct: 31 AVDLNKASKEELMSIKGIGEAKAQAIIDY-REKTPLKSIDDLKNIKGFGPKIIEKIRPSV 89 Query: 647 I 647 + Sbjct: 90 V 90 >gi|315641044|ref|ZP_07896127.1| competence protein ComEA [Enterococcus italicus DSM 15952] gi|315483213|gb|EFU73726.1| competence protein ComEA [Enterococcus italicus DSM 15952] Length = 199 Score = 41.3 bits (95), Expect = 0.67, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 24/62 (38%) Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 + + N L + +G+ AQAI+++ N +++ L + EK Sbjct: 136 ESKVNINTASAEELQTLTGIGEKKAQAIIDYRTQNGNFQSIDQLTEVDGFGEKTVEKLRD 195 Query: 645 SE 646 S Sbjct: 196 SI 197 >gi|158285701|ref|XP_564818.3| AGAP007413-PA [Anopheles gambiae str. PEST] gi|157020120|gb|EAL41797.3| AGAP007413-PA [Anopheles gambiae str. PEST] Length = 1257 Score = 40.9 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 +E++ LGA V+ L + T +I D S +KA+++ + I++ ++ +++N Sbjct: 225 DGIKEHIASLGAKVNERLLKDTTHVIFKDGLLSTYQKAKKMNIPIVSIL-WIEACKRHNC 283 Query: 724 TLRIHD 729 + +D Sbjct: 284 LMNPND 289 >gi|77359784|ref|YP_339359.1| competence protein [Pseudoalteromonas haloplanktis TAC125] gi|76874695|emb|CAI85916.1| conserved protein of unknown function; putative competence protein [Pseudoalteromonas haloplanktis TAC125] Length = 99 Score = 40.9 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 5/66 (7%) Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 + N D L ++P +G AQAI+++ + N ++E L + K ++ Sbjct: 36 QAALNINTADVSQLSKLPGIGKKKAQAIIDYREAKGNFTSLEDLK-----MVKGIGKKLA 90 Query: 645 SEIENK 650 +++E K Sbjct: 91 AKLEGK 96 >gi|126701033|ref|YP_001089930.1| excinuclease ABC subunit C [Clostridium difficile 630] gi|255102613|ref|ZP_05331590.1| excinuclease ABC subunit C [Clostridium difficile QCD-63q42] gi|255308439|ref|ZP_05352610.1| excinuclease ABC subunit C [Clostridium difficile ATCC 43255] gi|119367642|sp|Q180Q8|UVRC_CLOD6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|115252470|emb|CAJ70313.1| Excinuclease ABC subunit C [Clostridium difficile] Length = 605 Score = 40.9 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 10/64 (15%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I+ +G + +SL ++ + L+ V + IA + F++ Sbjct: 552 DIQGIGEKRKKSLLNHFKDVDAIKKAT----------MEELLEVDGMNKSIADNVYNFFR 601 Query: 618 NPRN 621 N Sbjct: 602 KEEN 605 >gi|299742759|ref|XP_001832754.2| hypothetical protein CC1G_11918 [Coprinopsis cinerea okayama7#130] gi|298405334|gb|EAU89078.2| hypothetical protein CC1G_11918 [Coprinopsis cinerea okayama7#130] Length = 1706 Score = 40.9 bits (94), Expect = 0.70, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Query: 654 FTG---TLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 F+G T+ R ++ + +GA + +S K ++I +K +KA + Sbjct: 517 FSGHEITVTNYTGEAREYLKKLIITMGATFTPSMSGKNTVLIAATKDSTKAQKALSWSIP 576 Query: 708 IMN 710 ++N Sbjct: 577 VVN 579 >gi|224541140|ref|ZP_03681679.1| hypothetical protein CATMIT_00292 [Catenibacterium mitsuokai DSM 15897] gi|224525949|gb|EEF95054.1| hypothetical protein CATMIT_00292 [Catenibacterium mitsuokai DSM 15897] Length = 297 Score = 40.9 bits (94), Expect = 0.70, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 42/84 (50%), Gaps = 15/84 (17%) Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---------PGSKLEKA 701 + FTG L + + + +V Q G + S ++ +T +++G K++KA Sbjct: 211 TVAFTGKLAH-TKQEIESFVEQDGMIPSFHVTTQTKYLVIGKKDYQQTRYQKGNKKIKKA 269 Query: 702 QQL-----GVKIMNEEQFLFLLQQ 720 L ++I++E+Q++ ++++ Sbjct: 270 ITLSRQGQDIRILHEDQYIDMVRK 293 >gi|330813705|ref|YP_004357944.1| excinuclease ABC subunit C [Candidatus Pelagibacter sp. IMCC9063] gi|327486800|gb|AEA81205.1| excinuclease ABC subunit C [Candidatus Pelagibacter sp. IMCC9063] Length = 259 Score = 40.9 bits (94), Expect = 0.71, Method: Composition-based stats. Identities = 12/94 (12%), Positives = 30/94 (31%), Gaps = 11/94 (11%) Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLG-IRHVGAEIARSLAKYYLSYQNFAQEINNI 587 + + R+ + L I +G ++L ++ S + Sbjct: 174 MQRLRDEAHRFAIFTHRKKRKKSFLVSPLDEIPGIGRNRKKTLLNHFGSAKTIEGA---- 229 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 L +V + ++IA+ I ++ +N Sbjct: 230 ------SLEDLKKVDGISELIAKKIYNYFHLNKN 257 >gi|320528980|ref|ZP_08030072.1| comEA protein [Selenomonas artemidis F0399] gi|320138610|gb|EFW30500.1| comEA protein [Selenomonas artemidis F0399] Length = 186 Score = 40.9 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 572 KYYLSYQNF--AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629 + + S + + I N + L +P +G ++ IVE+ + N +E + Sbjct: 108 QKFGSKTAVPAGNDTDGRININTANEKELQELPGIGPAMSARIVEYREENGNFKKIEDIK 167 Query: 630 KEVSPSIGRHEKNVS 644 K + EK Sbjct: 168 KIRGIGNAKFEKLKD 182 >gi|254526395|ref|ZP_05138447.1| excinuclease ABC, C subunit [Prochlorococcus marinus str. MIT 9202] gi|221537819|gb|EEE40272.1| excinuclease ABC, C subunit [Prochlorococcus marinus str. MIT 9202] Length = 644 Score = 40.9 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 28/100 (28%), Gaps = 10/100 (10%) Query: 520 STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQN 579 K +L S ++ + I +G+ + L +++ S Sbjct: 555 MNQKGVMLLRRLRDEAHRFALSFHRNKRSKRMNKSQLTQIPGLGSSRIKDLLEHFNSVDA 614 Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 L++V +G A I F+ N Sbjct: 615 IRIASK----------EDLMKVKGLGANTANDIYNFFNND 644 >gi|126726024|ref|ZP_01741866.1| excinuclease ABC subunit C [Rhodobacterales bacterium HTCC2150] gi|126705228|gb|EBA04319.1| excinuclease ABC subunit C [Rhodobacterales bacterium HTCC2150] Length = 641 Score = 40.9 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 10/88 (11%) Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 ++ + + + +GA R+L +Y S A Sbjct: 562 MRDEAHRFAIGTHRAKRAKSQFKNPLDEVPGIGAARKRALLAHYGS----------AKAV 611 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 + L V + D +AQ+I +F+ Sbjct: 612 SRAGLSDLKAVEGISDSMAQSIYDFFHE 639 >gi|315075308|ref|NP_001186667.1| topoisomerase (DNA) II binding protein 1 [Danio rerio] Length = 1526 Score = 40.9 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK-TDIIIVGDNPGSKLEKAQQLG 705 ++ + TG L ++R + Q Q GA + L +IV + G K E A++ Sbjct: 200 LKGCTVCVTG-LSTVERKEVQRLCDQNGATYTGQLKMNECTHLIVNEPTGQKYEFARKWN 258 Query: 706 V 706 V Sbjct: 259 V 259 >gi|300857271|ref|YP_003782255.1| putative DNA-binding protein [Clostridium ljungdahlii DSM 13528] gi|300437386|gb|ADK17153.1| putative DNA-binding protein [Clostridium ljungdahlii DSM 13528] Length = 354 Score = 40.9 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 19/51 (37%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 +N + + + L RV +G+ A+AI + R ++ Sbjct: 302 IENLVKNFKELKGVMEASYEQLDRVEGIGEARARAIKNGLRRLREQIMIDN 352 >gi|226308604|ref|YP_002768564.1| oxidoreductase [Rhodococcus erythropolis PR4] gi|226187721|dbj|BAH35825.1| putative oxidoreductase [Rhodococcus erythropolis PR4] Length = 264 Score = 40.9 bits (94), Expect = 0.75, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 29/90 (32%) Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------- 694 + +E K +V TG I R AQ GA V ++ +P Sbjct: 2 NRLEGKNVVITGAASGIGRAAAQLMA-AEGAKV----------LVADLDPARAEEAAAAM 50 Query: 695 ----GSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G+ A GV +MNEE ++++ Sbjct: 51 RETGGT----ALGFGVDVMNEESLATMIER 76 >gi|320100599|ref|YP_004176191.1| ERCC4 domain-containing protein [Desulfurococcus mucosus DSM 2162] gi|319752951|gb|ADV64709.1| ERCC4 domain protein [Desulfurococcus mucosus DSM 2162] Length = 241 Score = 40.9 bits (94), Expect = 0.76, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 10/89 (11%) Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 ++ +R+ + + I + +G +AR L + + + +N A + Sbjct: 152 RTEEKRVFRMRTERKPMDINERILYVAEGVIGPVLARKLLERFKTLRNLANASKH----- 206 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 L+ V +G+ A+ I + P Sbjct: 207 -----DLLSVEGIGEKRAEEIYLLFNTPW 230 >gi|186684085|ref|YP_001867281.1| excinuclease ABC subunit C [Nostoc punctiforme PCC 73102] gi|229558461|sp|B2J6D3|UVRC_NOSP7 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|186466537|gb|ACC82338.1| excinuclease ABC, C subunit [Nostoc punctiforme PCC 73102] Length = 625 Score = 40.9 bits (94), Expect = 0.76, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 10/59 (16%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I +G + L ++ S Q L VP +G +AQ I +++ Sbjct: 575 IPGLGHHRQKQLLGHFRSVDYIRQATTP----------QLAEVPGIGPRLAQEIYDYFH 623 >gi|148706506|gb|EDL38453.1| cysteine rich transmembrane BMP regulator 1 (chordin like), isoform CRA_a [Mus musculus] Length = 1152 Score = 40.9 bits (94), Expect = 0.78, Method: Composition-based stats. Identities = 38/436 (8%), Positives = 84/436 (19%), Gaps = 44/436 (10%) Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----------SLNIPEIIEVRGE----- 190 G RGDG G+ T P + + R + Sbjct: 481 GSTPRIVSRGDGTPGKCCDVFECVNETKPACVFNSVEYYDGDMFRMDNCRFCRCQGGVSI 540 Query: 191 VYISKNDFLALNDEMIAVGRKPYANP------RNAASGILR----------RLNPTDITR 234 + ++ L + G N A R + + Sbjct: 541 CFTAQCGELNCERYYVPEGECCPVCEDPIYPLNNPAGCYANGQIRAHGDRWREDDCTFCQ 600 Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 +N H + ++ + + + + + K Sbjct: 601 CINGEPHCVATACGQSCMHPVKVPGECCPVCEEPTYITIDPPACGELSNCSLKEKDCVYG 660 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 D +G + + LG + T + + ++ R Sbjct: 661 FKLDHNGCRTCQCKIREELCLGLKRACTLDC------PFGFLTDVHNCELCQCRPRPKKC 714 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 + + N + K + + + Sbjct: 715 RPTMCDKFCPLGFLKNKHGCDICRCKKCPELPCSKICPLGFQQDSHGCLICKCRGTCLSM 774 Query: 415 DIIVNERHPDAQPFSFPSFCP-------ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467 D ++ +C + V NP CT Sbjct: 775 DGHHHKNEESWHDGCRECYCHNGKEMCALITCPVPACGNPTIRSGQCCPSCTDDFVVQKP 834 Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527 +L + +D + + + ++ Q S T+ Sbjct: 835 ELSTPSICHAPGGEYFVEGETWNIDSCTQCTCHSGRVLCETEVCPPLLCQNPSRTQDSCC 894 Query: 528 LGFGDVSVTNLYDSIN 543 D Sbjct: 895 PQCTDDPPQPSTSHNE 910 >gi|118618948|ref|YP_907280.1| membrane protein ComEA [Mycobacterium ulcerans Agy99] gi|118571058|gb|ABL05809.1| conserved hypothetical membrane protein ComEA [Mycobacterium ulcerans Agy99] Length = 291 Score = 40.9 bits (94), Expect = 0.78, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%) Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 + ++ N L +P VG + A AIV + N +V+ L + R +K Sbjct: 227 LAEVLDLNTATVEQLDSLPGVGPVTAAAIVSWRAANGNFTSVDQLAEVDGIGPARLQK 284 >gi|313200896|ref|YP_004039554.1| competence protein comea helix-hairpin-helix repeat-containing protein [Methylovorus sp. MP688] gi|312440212|gb|ADQ84318.1| competence protein ComEA helix-hairpin-helix repeat protein [Methylovorus sp. MP688] Length = 95 Score = 40.9 bits (94), Expect = 0.78, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 21/49 (42%) Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 FA + + N L V +G AQAI+++ + N VE L Sbjct: 10 FALSAHAAVNINTASKEELETVKGIGPAKAQAIIDYRKKNGNFKTVEDL 58 >gi|255537217|ref|XP_002509675.1| conserved hypothetical protein [Ricinus communis] gi|223549574|gb|EEF51062.1| conserved hypothetical protein [Ricinus communis] Length = 320 Score = 40.9 bits (94), Expect = 0.78, Method: Composition-based stats. Identities = 9/22 (40%), Positives = 11/22 (50%) Query: 36 YQYSKPIILDSEYDALKRRCDA 57 Y PI+ D E+D LK R Sbjct: 146 YVSGNPIMSDEEFDQLKLRLKQ 167 >gi|124025829|ref|YP_001014945.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str. NATL1A] gi|123960897|gb|ABM75680.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str. NATL1A] Length = 228 Score = 40.9 bits (94), Expect = 0.78, Method: Composition-based stats. Identities = 39/213 (18%), Positives = 71/213 (33%), Gaps = 28/213 (13%) Query: 116 RFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR 175 R W + + LEPKI G++I I+Y G+ + +D++ +R++ TIP+ Sbjct: 43 REWLEIFLPNTRIILEPKIIGSIIGIQYINGELNKVIN----KNSQDITESVRSLKTIPK 98 Query: 176 VLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY 235 L++ + + + R + + N ++ Sbjct: 99 SLAI-------------------KNRLEIQGVLYDNKNLSTRKNETEFIDIQNFISKSKR 139 Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295 L F + Q K P + + + E K Sbjct: 140 LKFCAFQI--CQCNINHFQSLQELKHLNFEIPQTQFTNFISDIEIYLQCWREGKLFT--- 194 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 Y +GLV K++ LQK LG+ S W + Sbjct: 195 SYPTNGLVLKINSRKLQKYLGKNNLSIPWAYAI 227 >gi|329725335|gb|EGG61818.1| comEA protein [Staphylococcus epidermidis VCU144] Length = 200 Score = 40.9 bits (94), Expect = 0.81, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 23/62 (37%) Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 N + N+ L +P +G A+ I+ + + +++ L+K EK Sbjct: 136 TNQPLNLNSATEEQLKNIPGIGPSKAKEILNYREQNHGFNSIDDLMKIKGFGKKTFEKLK 195 Query: 644 SS 645 Sbjct: 196 EH 197 >gi|282861580|ref|ZP_06270644.1| protein of unknown function DUF181 [Streptomyces sp. ACTE] gi|282563396|gb|EFB68934.1| protein of unknown function DUF181 [Streptomyces sp. ACTE] Length = 760 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 29/99 (29%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEY----DALKRRCDAIAHAFPDLARSEDP 71 + + +S+L + + H Y+Q +P + + Y D PD + DP Sbjct: 396 ETQARVSALCEAVERHS-GYFQGDEPTLT-AAYRDVADR---------AVHPDAVQLFDP 444 Query: 72 ------------NGPLNKIGGEMNLSLFKVTHSIPTLSL 98 +GP +++ E V H P SL Sbjct: 445 RQYAGRAEWNAAHGPAHRV-CEPFDEEEPV-HWTPMWSL 481 >gi|323360113|ref|YP_004226509.1| nuclease subunit of the excinuclease complex [Microbacterium testaceum StLB037] gi|323276484|dbj|BAJ76629.1| nuclease subunit of the excinuclease complex [Microbacterium testaceum StLB037] Length = 647 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 9/85 (10%), Positives = 28/85 (32%), Gaps = 10/85 (11%) Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592 + + +++R+ + + +G ++L +++ S Sbjct: 572 RDEAHRFAIVHQRKRRKRDITSVLAEVPGLGDTRIKALLRHFGSVTALKNATP------- 624 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQ 617 + +P +G +A+AI Sbjct: 625 ---DEITALPGIGPALAEAIHTHLA 646 >gi|311741302|ref|ZP_07715126.1| competence protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311303472|gb|EFQ79551.1| competence protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 230 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 22/55 (40%) Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645 N+ L + +G++ AQAIV + + VE LL+ + + Sbjct: 173 NSATAEELTELKGIGEVTAQAIVAYREEHGGFKDVEELLEVSGIGPAKLAQLKDQ 227 >gi|254977032|ref|ZP_05273504.1| excinuclease ABC subunit C [Clostridium difficile QCD-66c26] gi|255094359|ref|ZP_05323837.1| excinuclease ABC subunit C [Clostridium difficile CIP 107932] gi|255316112|ref|ZP_05357695.1| excinuclease ABC subunit C [Clostridium difficile QCD-76w55] gi|255518773|ref|ZP_05386449.1| excinuclease ABC subunit C [Clostridium difficile QCD-97b34] gi|255651951|ref|ZP_05398853.1| excinuclease ABC subunit C [Clostridium difficile QCD-37x79] gi|260684915|ref|YP_003216200.1| excinuclease ABC subunit C [Clostridium difficile CD196] gi|260688573|ref|YP_003219707.1| excinuclease ABC subunit C [Clostridium difficile R20291] gi|260211078|emb|CBA66452.1| excinuclease ABC subunit C [Clostridium difficile CD196] gi|260214590|emb|CBE07159.1| excinuclease ABC subunit C [Clostridium difficile R20291] Length = 605 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 10/64 (15%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I+ +G + +SL ++ + + L+ V + IA + F++ Sbjct: 552 DIQGIGEKRKKSLLNHFKDVEAIKKAT----------MEELLEVDGMNKSIADNVYNFFR 601 Query: 618 NPRN 621 N Sbjct: 602 KEEN 605 >gi|332158155|ref|YP_004423434.1| Hef nuclease [Pyrococcus sp. NA2] gi|331033618|gb|AEC51430.1| Hef nuclease [Pyrococcus sp. NA2] Length = 749 Score = 40.9 bits (94), Expect = 0.83, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 10/56 (17%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + HV A +A+ L K++ S + L++V +G+ IA+ I Sbjct: 693 SLPHVSATLAKRLLKHFGSVEKVFTA----------SVPELMKVEGIGEKIAREIR 738 >gi|312865899|ref|ZP_07726120.1| ComE operon protein 1 [Streptococcus downei F0415] gi|311098303|gb|EFQ56526.1| ComE operon protein 1 [Streptococcus downei F0415] Length = 125 Score = 40.9 bits (94), Expect = 0.83, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%) Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 A + N+ L + +G+ AQ I+++ Q +VE L +E Sbjct: 58 ASSSQAKVNLNSASKEELQTISGIGEKRAQDIIDYRQEHGGFKSVEELKNISGIGEKTYE 117 Query: 641 K 641 K Sbjct: 118 K 118 >gi|310829183|ref|YP_003961540.1| excinuclease ABC subunit C [Eubacterium limosum KIST612] gi|308740917|gb|ADO38577.1| excinuclease ABC subunit C [Eubacterium limosum KIST612] Length = 632 Score = 40.9 bits (94), Expect = 0.84, Method: Composition-based stats. Identities = 13/156 (8%), Positives = 40/156 (25%), Gaps = 15/156 (9%) Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 + +++ + + + ++ + ++ Sbjct: 477 DVFCIDGGKTHVDAVRSILQMYPNVHIEVCGMVKDDHHRIRGIIYKDEEYPLKKSTPLCT 536 Query: 532 D-----VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 V ++ I +G + L ++Y S N + Sbjct: 537 FLSDISEEVHRYALGYHQTLRKKGMLESRLEEIPGIGKKRRELLMRHYGSLNNLKKTT-- 594 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 L +P + D AQA+ +++ + + Sbjct: 595 --------LEELKTLPGMSDKTAQAVFDYFNDDEHK 622 >gi|242793677|ref|XP_002482213.1| poly(ADP)-ribose polymerase PARP, putative [Talaromyces stipitatus ATCC 10500] gi|218718801|gb|EED18221.1| poly(ADP)-ribose polymerase PARP, putative [Talaromyces stipitatus ATCC 10500] Length = 666 Score = 40.9 bits (94), Expect = 0.84, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 7/70 (10%) Query: 643 VSSEIENKKLVFTGTL---QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV--GDNPGS- 696 V + + + +GT + + K ++ + + G S +S ++ + GS Sbjct: 2 VPTPFKGSVIAVSGTFRTIPPMTQDKLKKIIEEGGGTFSPKVSNDCTHLVTSLKNATGSN 61 Query: 697 -KLEKAQQLG 705 K ++A L Sbjct: 62 AKFKQASALN 71 >gi|260800470|ref|XP_002595153.1| hypothetical protein BRAFLDRAFT_67948 [Branchiostoma floridae] gi|229280395|gb|EEN51164.1| hypothetical protein BRAFLDRAFT_67948 [Branchiostoma floridae] Length = 249 Score = 40.9 bits (94), Expect = 0.84, Method: Composition-based stats. Identities = 19/210 (9%), Positives = 47/210 (22%), Gaps = 10/210 (4%) Query: 333 KQASTRLLDIDIQIGRTGILT-PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 +TR+ + Q +L + ++ +T N + + Sbjct: 45 HCHNTRIALLQCQNTCMALLHCHNTWMTLLHCQNTWMTLLQCQNTCMALLQCQNTWMTL- 103 Query: 392 GRDIRVGDRVLVKRAGEVIPKV---VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448 ++ + + + + C ++ N Sbjct: 104 ---LQCQNTCMALLHCQNTWMTLLQCQNTWMALIYSQNTWMTLIHCQNTWMTLLHCQNTW 160 Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508 L + C L C + L+ + + I Sbjct: 161 MTLLQCQNTCMALLHCQNTWMTLLQ--GQNTCMALIHCQNTWMTLLQCQNTCMTLIHCQN 218 Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 TL Q T T ++ + + + Sbjct: 219 TWMTLIHCQNTWMTLLQFQDTWMTLLHCHT 248 >gi|282875982|ref|ZP_06284849.1| comEA protein [Staphylococcus epidermidis SK135] gi|281295007|gb|EFA87534.1| comEA protein [Staphylococcus epidermidis SK135] gi|329737348|gb|EGG73602.1| ComE operon protein 1 [Staphylococcus epidermidis VCU028] Length = 200 Score = 40.9 bits (94), Expect = 0.84, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 23/62 (37%) Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 N + N+ L +P +G A+ I+ + + +++ L+K EK Sbjct: 136 TNQPLNLNSATEEQLKNIPGIGPSKAKEILNYREQNHGFNSIDDLMKIKGFGKKTFEKLK 195 Query: 644 SS 645 Sbjct: 196 EH 197 >gi|297568807|ref|YP_003690151.1| Methylenetetrahydrofolate dehydrogenase (NADP(+)) [Desulfurivibrio alkaliphilus AHT2] gi|296924722|gb|ADH85532.1| Methylenetetrahydrofolate dehydrogenase (NADP(+)) [Desulfurivibrio alkaliphilus AHT2] Length = 295 Score = 40.9 bits (94), Expect = 0.84, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 22/82 (26%) Query: 663 RHKAQEYVTQLGAV---VSAILSRKTDIIIVGDNPGS------KLEKAQQLGV--KIMN- 710 R + + V L A V +++ I+VG++P S K + A++LG+ + + Sbjct: 16 RAELKTEVETLKAKHNVVPGLVT-----ILVGEDPASQSYVAAKNKTAKELGIHSEQITL 70 Query: 711 -----EEQFLFLLQQYNTTLRI 727 E++ L L+ + N +I Sbjct: 71 PADTPEDELLNLVAKCNQDPKI 92 >gi|253998810|ref|YP_003050873.1| competence protein ComEA helix-hairpin-helix repeat-containing protein [Methylovorus sp. SIP3-4] gi|253985489|gb|ACT50346.1| competence protein ComEA helix-hairpin-helix repeat protein [Methylovorus sp. SIP3-4] Length = 99 Score = 40.9 bits (94), Expect = 0.84, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 21/49 (42%) Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 FA + + N L V +G AQAI+++ + N VE L Sbjct: 14 FALSAHAAVNINTASKEELETVKGIGPAKAQAIIDYRKKNGNFKTVEDL 62 >gi|293366450|ref|ZP_06613127.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|291319219|gb|EFE59588.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|329735316|gb|EGG71608.1| ComE operon protein 1 [Staphylococcus epidermidis VCU045] Length = 200 Score = 40.9 bits (94), Expect = 0.85, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 23/62 (37%) Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 N + N+ L +P +G A+ I+ + + +++ L+K EK Sbjct: 136 TNQPLNLNSATEEQLKNIPGIGPSKAKEILNYREQNHGFNSIDDLMKIKGFGKKTFEKLK 195 Query: 644 SS 645 Sbjct: 196 EH 197 >gi|222084398|ref|YP_002542927.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84] gi|221721846|gb|ACM25002.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84] Length = 1000 Score = 40.9 bits (94), Expect = 0.85, Method: Composition-based stats. Identities = 15/143 (10%), Positives = 46/143 (32%), Gaps = 6/143 (4%) Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 IR F L + + I + + D + L + + + + Sbjct: 99 GLIRQATRAFNLPCIETDGFEADDIIATYARQAEATGADVTIISSDKDLMQLVTPMVHMY 158 Query: 562 VGAEIARS-LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 + + + + +++ ++ A D ++ +P +G A ++E + + Sbjct: 159 DSMKDKQIGIPDVIEKWGVPPEKMIDLQALTGDSVDNVPGIPGIGPKTAAQLLETFGDLD 218 Query: 621 NICAVEALLKEVSPSIGRHEKNV 643 + L + + +N+ Sbjct: 219 TL-----LARAGEIKQEKRRENI 236 >gi|220917777|ref|YP_002493081.1| excinuclease ABC, C subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|254764919|sp|B8JDG6|UVRC_ANAD2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|219955631|gb|ACL66015.1| excinuclease ABC, C subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 707 Score = 40.9 bits (94), Expect = 0.85, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 10/62 (16%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I +G R+L +++ + + + + +V G A A+ F+ Sbjct: 604 IPGIGEGRKRALLRHFGALRRVREATP----------EEIAQVEGFGPRQAAAVHAFFHR 653 Query: 619 PR 620 P Sbjct: 654 PD 655 >gi|121714012|ref|XP_001274617.1| subunit of DNA polymerase II [Aspergillus clavatus NRRL 1] gi|119402770|gb|EAW13191.1| subunit of DNA polymerase II [Aspergillus clavatus NRRL 1] Length = 822 Score = 40.9 bits (94), Expect = 0.85, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 10/80 (12%) Query: 646 EIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIV----GDNPGSKLEK 700 + TG + + R+ Q+ GA L++ +I G+ K + Sbjct: 128 TFMGLSICITG-FEDMAYRNYIQDTAASNGADFRKDLTKNVSHLIAWNTEGE----KYKF 182 Query: 701 AQQLGVKIMNEEQFLFLLQQ 720 A Q +K++ + F +++ Sbjct: 183 ATQWNIKVVTLKWFTDSIER 202 >gi|114569323|ref|YP_756003.1| excinuclease ABC subunit C [Maricaulis maris MCS10] gi|119367665|sp|Q0ARM2|UVRC_MARMM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|114339785|gb|ABI65065.1| excinuclease ABC, C subunit [Maricaulis maris MCS10] Length = 633 Score = 40.9 bits (94), Expect = 0.85, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 10/75 (13%) Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 ++ + GI +G ++L ++ S A N L V Sbjct: 568 HRAKRKKQMTDNPLDGIDGIGPSRKKALLAHFGS----------AKAVRNAALADLEAVD 617 Query: 603 LVGDIIAQAIVEFYQ 617 + +A+ I +++Q Sbjct: 618 GISRAMARKIHDWFQ 632 >gi|86157705|ref|YP_464490.1| excinuclease ABC subunit C [Anaeromyxobacter dehalogenans 2CP-C] gi|119367624|sp|Q2IQH0|UVRC_ANADE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|85774216|gb|ABC81053.1| Excinuclease ABC subunit C [Anaeromyxobacter dehalogenans 2CP-C] Length = 707 Score = 40.9 bits (94), Expect = 0.85, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 10/62 (16%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I +G R+L +++ + + + + +V G A A+ F+ Sbjct: 604 IPGIGEGRKRALLRHFGALRRVREATP----------EEIAQVEGFGPRQAAAVHAFFHR 653 Query: 619 PR 620 P Sbjct: 654 PD 655 >gi|91790880|ref|YP_551831.1| ERCC4 [Polaromonas sp. JS666] gi|91700760|gb|ABE46933.1| ERCC4 [Polaromonas sp. JS666] Length = 217 Score = 40.9 bits (94), Expect = 0.86, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 10/57 (17%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 G+ G A+ L ++ S + L V +G A I E Sbjct: 162 GLPGCGPGTAKKLLGHFGSAERVFAA----------SVDELCAVKGIGRKTADQIRE 208 >gi|315656605|ref|ZP_07909492.1| excinuclease ABC subunit C [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492560|gb|EFU82164.1| excinuclease ABC subunit C [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 693 Score = 40.9 bits (94), Expect = 0.87, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 10/54 (18%) Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 ++L +++ S + + + VP G A+ +V F N N Sbjct: 646 KALLRHFGSVKRLREASAA----------EIAEVPGFGLKSAENLVAFLNNSGN 689 >gi|302875860|ref|YP_003844493.1| helicase, RecD/TraA family [Clostridium cellulovorans 743B] gi|307689293|ref|ZP_07631739.1| helicase, RecD/TraA family protein [Clostridium cellulovorans 743B] gi|302578717|gb|ADL52729.1| helicase, RecD/TraA family [Clostridium cellulovorans 743B] Length = 737 Score = 40.9 bits (94), Expect = 0.87, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 43/124 (34%), Gaps = 14/124 (11%) Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 I + TL + G + + I +ER++ S ++ Sbjct: 36 GVIPYIVEGQTL---KLKGQWINHKKFGQQFKVEE--CEEVLPDSVIGIERYLSSGVVQG 90 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 +G AR + +++ + + + +D L + +G + I E + R+ Sbjct: 91 IGPVTARKIVQHFGN---------DALRIMEEDIERLKEIEGIGAKKIKVIAESFATQRD 141 Query: 622 ICAV 625 I A+ Sbjct: 142 IRAI 145 >gi|298346942|ref|YP_003719629.1| excision endonuclease subunit UvrC [Mobiluncus curtisii ATCC 43063] gi|298237003|gb|ADI68135.1| excision endonuclease subunit UvrC [Mobiluncus curtisii ATCC 43063] Length = 693 Score = 40.9 bits (94), Expect = 0.87, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 10/54 (18%) Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 ++L +++ S + + + VP G A+ +V F N N Sbjct: 646 KALLRHFGSVKRLREASAA----------EIAEVPGFGLKSAENLVAFLNNSGN 689 >gi|227549218|ref|ZP_03979267.1| excinuclease ABC subunit C [Corynebacterium lipophiloflavum DSM 44291] gi|227078672|gb|EEI16635.1| excinuclease ABC subunit C [Corynebacterium lipophiloflavum DSM 44291] Length = 689 Score = 40.5 bits (93), Expect = 0.89, Method: Composition-based stats. Identities = 15/111 (13%), Positives = 33/111 (29%), Gaps = 13/111 (11%) Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 P D + + + + + Y + + + G+ +G Sbjct: 590 PDDDEPVILPRNSEGMYLLQQIRDEAHRFAITYHRQQRSKRMRASA---LDGVPGLGPAR 646 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 L KY+ S + + + +V VG +A++I E Sbjct: 647 RTDLVKYFGSVKKITEATK----------EEIQQVKGVGPKLAESIYEHLH 687 >gi|73960821|ref|XP_863797.1| PREDICTED: similar to Poly [ADP-ribose] polymerase-1 (PARP-1) (ADPRT) (NAD(+) ADP-ribosyltransferase-1) (Poly[ADP-ribose] synthetase-1) isoform 3 [Canis familiaris] Length = 981 Score = 40.5 bits (93), Expect = 0.89, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 5/42 (11%) Query: 644 SSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAILSR 683 + N K++ TL K+ R + + + +LG ++ ++ Sbjct: 354 GKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANK 392 >gi|327263319|ref|XP_003216467.1| PREDICTED: multiple epidermal growth factor-like domains protein 10-like [Anolis carolinensis] Length = 1139 Score = 40.5 bits (93), Expect = 0.90, Method: Composition-based stats. Identities = 26/340 (7%), Positives = 49/340 (14%), Gaps = 15/340 (4%) Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222 S I P N + NP A Sbjct: 118 CSDKCIHGRCIAPNTCQCEPGWGGPNCSSACDSNHWGPHCSSRCQCKNGALCNPITGACH 177 Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282 + + +G + + P Sbjct: 178 CAAGFKGWRCEEHCDQGTYGNDCHQKCQCQNGATCDHVTGECRCPPGYTGAFCEDLCPPG 237 Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER-----ARSPRWMI---SHKFAEKQ 334 + + + +G V G P + + Sbjct: 238 KHGPQCEERCPC----QNGGVCHHVTGECACPPGWMGTVCGQPCPEGRYGKNCSQECQCH 293 Query: 335 ASTRLLDID--IQIGRTGILTPVARLEPVNIGGALI-TNATLHNEDYIKGLDASGKVMRG 391 + G V G N + + G Sbjct: 294 NGGKCDSATGQCNCGPGYTGERCQDECAVGTFGVQCAETCQCRNGGKCYHISGACLCEPG 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 R+ + + P S C S + + G Sbjct: 354 YTGEHCETRLCTEGIYGIKCDKKCPCHLPNTHSCHPMSGECSCESGWSGLYCNETCSPGF 413 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + + A + F Sbjct: 414 YGESCQQICTCQNGADCDSVSGKCICAPGFKGSDCSIPCP 453 >gi|168178803|ref|ZP_02613467.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916] gi|226950961|ref|YP_002806052.1| DNA integrity scanning protein DisA [Clostridium botulinum A2 str. Kyoto] gi|254777853|sp|C1FNB1|DISA_CLOBJ RecName: Full=DNA integrity scanning protein disA gi|182670150|gb|EDT82126.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916] gi|226841239|gb|ACO83905.1| putative DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 353 Score = 40.5 bits (93), Expect = 0.90, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 18/51 (35%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 +N N + + L V +G+ A+AI + R ++ Sbjct: 302 IENLVANFNQLKCVMEASYEQLDNVEGIGEARAKAIKNGLRRLREQIMLDK 352 >gi|73960819|ref|XP_863776.1| PREDICTED: similar to Poly [ADP-ribose] polymerase-1 (PARP-1) (ADPRT) (NAD(+) ADP-ribosyltransferase-1) (Poly[ADP-ribose] synthetase-1) isoform 2 [Canis familiaris] Length = 976 Score = 40.5 bits (93), Expect = 0.90, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 5/42 (11%) Query: 644 SSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAILSR 683 + N K++ TL K+ R + + + +LG ++ ++ Sbjct: 343 GKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANK 381 >gi|73960817|ref|XP_547506.2| PREDICTED: similar to Poly [ADP-ribose] polymerase-1 (PARP-1) (ADPRT) (NAD(+) ADP-ribosyltransferase-1) (Poly[ADP-ribose] synthetase-1) isoform 1 [Canis familiaris] Length = 972 Score = 40.5 bits (93), Expect = 0.90, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 5/42 (11%) Query: 644 SSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAILSR 683 + N K++ TL K+ R + + + +LG ++ ++ Sbjct: 345 GKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANK 383 >gi|73960823|ref|XP_863821.1| PREDICTED: similar to Poly [ADP-ribose] polymerase-1 (PARP-1) (ADPRT) (NAD(+) ADP-ribosyltransferase-1) (Poly[ADP-ribose] synthetase-1) isoform 4 [Canis familiaris] Length = 973 Score = 40.5 bits (93), Expect = 0.90, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 5/42 (11%) Query: 644 SSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAILSR 683 + N K++ TL K+ R + + + +LG ++ ++ Sbjct: 346 GKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANK 384 >gi|189218734|ref|YP_001939375.1| excinuclease ABC subunit C [Methylacidiphilum infernorum V4] gi|189185592|gb|ACD82777.1| Excinuclease ABC subunit C [Methylacidiphilum infernorum V4] Length = 486 Score = 40.5 bits (93), Expect = 0.91, Method: Composition-based stats. Identities = 7/60 (11%), Positives = 18/60 (30%), Gaps = 10/60 (16%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 + + L + + S + + + V +G +A+ I+ F Sbjct: 434 DCPGISENRKKLLIRAFGSIEKIKKS----------SVEEIAAVKGIGKKLAEQILSFLS 483 >gi|187776549|ref|ZP_02993022.1| hypothetical protein CLOSPO_00061 [Clostridium sporogenes ATCC 15579] gi|187775208|gb|EDU39010.1| hypothetical protein CLOSPO_00061 [Clostridium sporogenes ATCC 15579] Length = 356 Score = 40.5 bits (93), Expect = 0.91, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 18/51 (35%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 +N N + + L V +G+ A+AI + R ++ Sbjct: 305 IENLVANFNQLKCVMEASYEQLDNVEGIGEARAKAIKNGLRRLREQIMLDK 355 >gi|296417739|ref|XP_002838510.1| hypothetical protein [Tuber melanosporum Mel28] gi|295634449|emb|CAZ82701.1| unnamed protein product [Tuber melanosporum] Length = 755 Score = 40.5 bits (93), Expect = 0.92, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 14/81 (17%) Query: 650 KKLVFT--GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-----DNPG--S---K 697 K +VF+ G L + R +E V G V L+ + D +VG DNP S K Sbjct: 631 KNVVFSFRGILPTLTRGDMRELVHIYGGFVEENLTSRIDYTVVGSRNPLDNPQVWSREMK 690 Query: 698 LEKAQQLGVKIMNEEQFLFLL 718 + +QLG++ ++E+ F LL Sbjct: 691 II--EQLGIRKIDEDGFAELL 709 >gi|217076174|ref|YP_002333890.1| hypothetical protein THA_41 [Thermosipho africanus TCF52B] gi|217036027|gb|ACJ74549.1| hypothetical protein THA_41 [Thermosipho africanus TCF52B] Length = 191 Score = 40.5 bits (93), Expect = 0.92, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%) Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 II N D L+ +P +G + A+AI+ + Q N +++ L+ EK Sbjct: 52 QIIDLNKADLEQLMSLPGIGTVKAKAIISYRQAHGNFNSIDDLINVTGIGPSTLEK 107 >gi|168181835|ref|ZP_02616499.1| putative DNA-binding protein [Clostridium botulinum Bf] gi|237796970|ref|YP_002864522.1| DNA integrity scanning protein DisA [Clostridium botulinum Ba4 str. 657] gi|259645240|sp|C3KVS9|DISA_CLOB6 RecName: Full=DNA integrity scanning protein disA gi|182674824|gb|EDT86785.1| putative DNA-binding protein [Clostridium botulinum Bf] gi|229261401|gb|ACQ52434.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 353 Score = 40.5 bits (93), Expect = 0.92, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 18/51 (35%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 +N N + + L V +G+ A+AI + R ++ Sbjct: 302 IENLVANFNQLKCVMEASYEQLDNVEGIGEARAKAIKNGLRRLREQIMLDK 352 >gi|148381449|ref|YP_001255990.1| DNA integrity scanning protein DisA [Clostridium botulinum A str. ATCC 3502] gi|153933678|ref|YP_001385824.1| DNA integrity scanning protein DisA [Clostridium botulinum A str. ATCC 19397] gi|153935579|ref|YP_001389231.1| DNA integrity scanning protein DisA [Clostridium botulinum A str. Hall] gi|153940121|ref|YP_001392862.1| DNA integrity scanning protein DisA [Clostridium botulinum F str. Langeland] gi|170755550|ref|YP_001783149.1| DNA integrity scanning protein DisA [Clostridium botulinum B1 str. Okra] gi|189083126|sp|A7GJA2|DISA_CLOBL RecName: Full=DNA integrity scanning protein disA gi|226729436|sp|A7FZ95|DISA_CLOB1 RecName: Full=DNA integrity scanning protein disA gi|226729439|sp|A5I7N4|DISA_CLOBH RecName: Full=DNA integrity scanning protein disA gi|226729440|sp|B1IGI2|DISA_CLOBK RecName: Full=DNA integrity scanning protein disA gi|148290933|emb|CAL85069.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152929722|gb|ABS35222.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152931493|gb|ABS36992.1| putative DNA-binding protein [Clostridium botulinum A str. Hall] gi|152936017|gb|ABS41515.1| putative DNA-binding protein [Clostridium botulinum F str. Langeland] gi|169120762|gb|ACA44598.1| putative DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|295320840|gb|ADG01218.1| putative DNA-binding protein [Clostridium botulinum F str. 230613] gi|322807835|emb|CBZ05410.1| DNA integrity scanning protein disA [Clostridium botulinum H04402 065] Length = 353 Score = 40.5 bits (93), Expect = 0.92, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 18/51 (35%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 +N N + + L V +G+ A+AI + R ++ Sbjct: 302 IENLVANFNQLKCVMEASYEQLDNVEGIGEARAKAIKNGLRRLREQIMLDK 352 >gi|120601910|ref|YP_966310.1| hypothetical protein Dvul_0862 [Desulfovibrio vulgaris DP4] gi|120562139|gb|ABM27883.1| hypothetical protein Dvul_0862 [Desulfovibrio vulgaris DP4] Length = 240 Score = 40.5 bits (93), Expect = 0.92, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 10/80 (12%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-----DNPGSKLEKAQQL-- 704 TG + +R ++ + G +S + +++VG D+ SKL KA Sbjct: 153 FCLTGKFRAGKREYCKQIIKSFGGTYRNCISGEECVLVVGSLGWNDSFSSKLHKAIAWRA 212 Query: 705 G---VKIMNEEQFLFLLQQY 721 G + I++EE + + ++ Sbjct: 213 GNARISIVSEEHWWKVFGKH 232 >gi|84488838|ref|YP_447070.1| Hef nuclease [Methanosphaera stadtmanae DSM 3091] gi|84372157|gb|ABC56427.1| predicted ERCC4-like helicase [Methanosphaera stadtmanae DSM 3091] Length = 752 Score = 40.5 bits (93), Expect = 0.92, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 10/57 (17%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + +G A++L +++ + +N N L V +G+ A I++ Sbjct: 698 SLPGIGPVSAKNLLRHFKNVKNIVNASKN----------ELKDVEGIGEKTATNIID 744 >gi|170759473|ref|YP_001788849.1| DNA integrity scanning protein DisA [Clostridium botulinum A3 str. Loch Maree] gi|226729441|sp|B1KTB1|DISA_CLOBM RecName: Full=DNA integrity scanning protein disA gi|169406462|gb|ACA54873.1| putative DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 353 Score = 40.5 bits (93), Expect = 0.92, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 18/51 (35%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 +N N + + L V +G+ A+AI + R ++ Sbjct: 302 IENLVANFNQLKCVMEASYEQLDNVEGIGEARAKAIKNGLRRLREQIMLDK 352 >gi|14520497|ref|NP_125972.1| Hef nuclease [Pyrococcus abyssi GE5] gi|5457712|emb|CAB49203.1| Putative ATP-dependent ERCC4-like helicase [Pyrococcus abyssi GE5] Length = 752 Score = 40.5 bits (93), Expect = 0.92, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 10/56 (17%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + HV A +A+ L K++ S + L++V +G+ IA+ I Sbjct: 697 SLPHVSATLAKRLLKHFGSVERVFTA----------SVPELMKVEGIGEKIAREIR 742 >gi|291566548|dbj|BAI88820.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 437 Score = 40.5 bits (93), Expect = 0.93, Method: Composition-based stats. Identities = 24/397 (6%), Positives = 65/397 (16%), Gaps = 22/397 (5%) Query: 164 SACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGI 223 R + + + + + + MI + +S Sbjct: 17 FVLSRCVTSSHWWFDQVMIRCDAPYFFGWCVTSSHWWFDQVMIQCDAPYFFGWCVTSSHW 76 Query: 224 LRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVS 283 F +S + G+ V + + Sbjct: 77 WFDQVMIQCDTPYFFGW--CVTSSHWWFDQVMIQCDAPYFFGWCVTSSHWWFDQVMIQCD 134 Query: 284 YYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDID 343 ++ + D ++ + D + + + Sbjct: 135 APYFFGWCVTSSHWWFDQVMIQCDAPYFFGWCVTSSHWWFDQVMIQCDAPYFFGWC---- 190 Query: 344 IQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLV 403 + + + + G ++ D + + V Sbjct: 191 VTSSHWWFDQVMIQCDAPYFFG-WCVTSSHWWFDQVMIQCDAPYFFGWCVTSSHWWFDQV 249 Query: 404 KRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463 + + + C + +C Sbjct: 250 MIQCDAPYFFGWCVTS---SHWWFDQVMIQCDAPYFFGWCVTSSHWWFDQVMFQCDAPY- 305 Query: 464 CSAQQLERLKHFVSRDAF------NIEGLG----KQQLDFFFKSEDPAFSIRIPADIFTL 513 H+ G D D + Sbjct: 306 -FFGWCVTSSHWWFDQVMIQCDAPYFFGWCVTSSHWWFDQVMIQCDAPYFFGWCVTSSHW 364 Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 Q G+ S +D + R + Sbjct: 365 WFDQVMIQCDAPYFFGWCVTSSHWWFDQVMIRCDAPY 401 >gi|159479234|ref|XP_001697698.1| hypothetical protein CHLREDRAFT_150878 [Chlamydomonas reinhardtii] gi|158274066|gb|EDO99850.1| predicted protein [Chlamydomonas reinhardtii] Length = 1001 Score = 40.5 bits (93), Expect = 0.93, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 6/66 (9%) Query: 651 KLVFTGT-LQKIQRHKAQEYVTQLGAVVSAI-LSRKTDIIIVGD--N--PGSKLEKAQQL 704 K+V TG+ +R + + +LGA S + RKT ++ D +K KA + Sbjct: 20 KVVITGSGFSTDEREVIRAWAQRLGAGYSGDLVCRKTTHLVSKDLLKQYASAKYYKALEW 79 Query: 705 GVKIMN 710 G+ I++ Sbjct: 80 GIAIVS 85 >gi|306836680|ref|ZP_07469644.1| competence protein ComEA family protein [Corynebacterium accolens ATCC 49726] gi|304567419|gb|EFM43020.1| competence protein ComEA family protein [Corynebacterium accolens ATCC 49726] Length = 225 Score = 40.5 bits (93), Expect = 0.96, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%) Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 A + ++ N+ L + VG++ A+AIV F + VE LL+ + Sbjct: 158 APAGGDKVSLNSATAAELTDLNGVGEVTAEAIVSFREERGGFKDVEELLEISGIGPAKFA 217 Query: 641 KNVSS 645 K + Sbjct: 218 KLKDN 222 >gi|302669467|ref|YP_003829427.1| excinuclease ABC C subunit UvrC [Butyrivibrio proteoclasticus B316] gi|302393940|gb|ADL32845.1| excinuclease ABC C subunit UvrC [Butyrivibrio proteoclasticus B316] Length = 623 Score = 40.5 bits (93), Expect = 0.96, Method: Composition-based stats. Identities = 16/140 (11%), Positives = 35/140 (25%), Gaps = 15/140 (10%) Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG-----DVSVTNLY 539 + Q LD ++ GF Sbjct: 493 NICLQVLDELGIHIPVCGMVKDDNHRTRGLYYNNVELPIDTRSEGFKLITRIQDEAHRFA 552 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 ++ + I VG ++L + + S ++ L Sbjct: 553 IEYHRSLRSKSQVKSSLDDIPGVGPSRRKALMRNFKSIEDIRNA----------SVEELS 602 Query: 600 RVPLVGDIIAQAIVEFYQNP 619 +VP + + A+ I +F+ + Sbjct: 603 QVPEIPESTARQIYDFFHSE 622 >gi|238855548|ref|ZP_04645851.1| DNA polymerase III [Lactobacillus jensenii 269-3] gi|260665137|ref|ZP_05865987.1| DNA polymerase III [Lactobacillus jensenii SJ-7A-US] gi|282932326|ref|ZP_06337761.1| DNA polymerase III [Lactobacillus jensenii 208-1] gi|238831832|gb|EEQ24166.1| DNA polymerase III [Lactobacillus jensenii 269-3] gi|260561191|gb|EEX27165.1| DNA polymerase III [Lactobacillus jensenii SJ-7A-US] gi|281303547|gb|EFA95714.1| DNA polymerase III [Lactobacillus jensenii 208-1] Length = 316 Score = 40.5 bits (93), Expect = 0.96, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 18/87 (20%) Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-------DNPGSK 697 + +NK +VF+G++ + T +G V + T+ +++G NP + Sbjct: 231 NPFKNKNIVFSGSIN----EELPVIATNMGGCVKTHVDSMTNYLVMGNQDFFSTSNP--E 284 Query: 698 LEKAQQL-----GVKIMNEEQFLFLLQ 719 L+KA+ L + ++E FL +L Sbjct: 285 LQKARSLIAEGNKISRISESFFLDMLD 311 >gi|126653877|ref|ZP_01725724.1| competence protein comEA [Bacillus sp. B14905] gi|126589602|gb|EAZ83741.1| competence protein comEA [Bacillus sp. B14905] Length = 211 Score = 40.5 bits (93), Expect = 0.96, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 24/65 (36%) Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 + + I N D +L +P +G AQ+I+ + + ++ L EK Sbjct: 144 ENKDQKININIADTETLATLPGIGPSKAQSILSYREENGRFQTIDDLRNVSGIGEKTFEK 203 Query: 642 NVSSE 646 S Sbjct: 204 LKDSI 208 >gi|121535700|ref|ZP_01667504.1| protein of unknown function DUF147 [Thermosinus carboxydivorans Nor1] gi|121305731|gb|EAX46669.1| protein of unknown function DUF147 [Thermosinus carboxydivorans Nor1] Length = 359 Score = 40.5 bits (93), Expect = 0.97, Method: Composition-based stats. Identities = 8/69 (11%), Positives = 22/69 (31%), Gaps = 10/69 (14%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I + + +L ++ + L V +G++ A+ I + + Sbjct: 299 IPRLPMLVVENLVAHFKTLHRIYNAT----------IAELDEVEGIGEVRAKTIKDGLKR 348 Query: 619 PRNICAVEA 627 R ++ Sbjct: 349 VREQALLDR 357 >gi|297618413|ref|YP_003703572.1| DNA integrity scanning, DisA, linker region [Syntrophothermus lipocalidus DSM 12680] gi|297146250|gb|ADI03007.1| DNA integrity scanning, DisA, linker region [Syntrophothermus lipocalidus DSM 12680] Length = 363 Score = 40.5 bits (93), Expect = 0.98, Method: Composition-based stats. Identities = 7/50 (14%), Positives = 16/50 (32%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 N + L V +G++ A++I + + +E Sbjct: 311 IDNLVATFGSFSNIIRASIEELDDVEGIGEVRARSIRNGLKRMQEQLILE 360 >gi|302840317|ref|XP_002951714.1| hypothetical protein VOLCADRAFT_109811 [Volvox carteri f. nagariensis] gi|300262962|gb|EFJ47165.1| hypothetical protein VOLCADRAFT_109811 [Volvox carteri f. nagariensis] Length = 339 Score = 40.5 bits (93), Expect = 0.99, Method: Composition-based stats. Identities = 10/22 (45%), Positives = 11/22 (50%) Query: 36 YQYSKPIILDSEYDALKRRCDA 57 Y KPI+ D EYD LK Sbjct: 137 YAKGKPIMSDEEYDLLKAELRN 158 >gi|27468194|ref|NP_764831.1| hypothetical protein SE1276 [Staphylococcus epidermidis ATCC 12228] gi|57867052|ref|YP_188733.1| comE operon protein 1 [Staphylococcus epidermidis RP62A] gi|27315740|gb|AAO04875.1|AE016748_109 ComEA [Staphylococcus epidermidis ATCC 12228] gi|57637710|gb|AAW54498.1| comE operon protein 1, putative [Staphylococcus epidermidis RP62A] Length = 224 Score = 40.5 bits (93), Expect = 0.99, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 23/62 (37%) Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 N + N+ L +P +G A+ I+ + + +++ L+K EK Sbjct: 160 TNQPLNLNSATEEQLKNIPGIGPSKAKEILNYREQNHGFNSIDDLMKIKGFGKKTFEKLK 219 Query: 644 SS 645 Sbjct: 220 EH 221 >gi|331002139|ref|ZP_08325658.1| UvrABC system protein C [Lachnospiraceae oral taxon 107 str. F0167] gi|330411233|gb|EGG90649.1| UvrABC system protein C [Lachnospiraceae oral taxon 107 str. F0167] Length = 611 Score = 40.5 bits (93), Expect = 1.00, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 38/139 (27%), Gaps = 15/139 (10%) Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF-----GDVSVTNLY 539 + Q L+ F + ++ + GF Sbjct: 481 NICLQVLEEFGLNIPVCGMVKDDNHRTRGLYYNNVEIPIDTHSQGFLLITRIQDEAHRFA 540 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 ++ + I +G ++L K++ +N N L+ Sbjct: 541 IEYHRSLRSKTQVKSILDDIEGIGTVRRKALMKHFKDIENI----------KNASPDELM 590 Query: 600 RVPLVGDIIAQAIVEFYQN 618 V + A+A+ EF+ N Sbjct: 591 SVDGMNKKSAKAVYEFFSN 609 >gi|251811006|ref|ZP_04825479.1| competence protein comEA [Staphylococcus epidermidis BCM-HMP0060] gi|251805516|gb|EES58173.1| competence protein comEA [Staphylococcus epidermidis BCM-HMP0060] Length = 224 Score = 40.5 bits (93), Expect = 1.00, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 23/62 (37%) Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 N + N+ L +P +G A+ I+ + + +++ L+K EK Sbjct: 160 TNQPLNLNSATEEQLKNIPGIGPSKAKEILNYREQNHGFNSIDDLMKIKGFGKKTFEKLK 219 Query: 644 SS 645 Sbjct: 220 EH 221 >gi|119367854|sp|Q3AXU8|UVRC_SYNS9 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 661 Score = 40.5 bits (93), Expect = 1.00, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 10/60 (16%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I +GA+ R L ++ S +L + P VG ++AQ I F+ Sbjct: 590 DIPGLGAKRVRDLLSHFHSIDAIQLA----------SVDTLSKAPGVGPVLAQDIFNFFH 639 >gi|78184688|ref|YP_377123.1| excinuclease ABC subunit C [Synechococcus sp. CC9902] gi|78168982|gb|ABB26079.1| Excinuclease ABC subunit C [Synechococcus sp. CC9902] Length = 679 Score = 40.5 bits (93), Expect = 1.00, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 10/60 (16%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I +GA+ R L ++ S +L + P VG ++AQ I F+ Sbjct: 608 DIPGLGAKRVRDLLSHFHSIDAIQLA----------SVDTLSKAPGVGPVLAQDIFNFFH 657 >gi|182412978|ref|YP_001818044.1| excinuclease ABC subunit C [Opitutus terrae PB90-1] gi|177840192|gb|ACB74444.1| excinuclease ABC C subunit domain protein [Opitutus terrae PB90-1] Length = 510 Score = 40.5 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 13/114 (11%), Positives = 27/114 (23%), Gaps = 13/114 (11%) Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563 I + L + + N Y+++ + + I G+ V Sbjct: 388 IFFVDERPPLNLPLNHPGLNLLQRVRDEAHRFANTYNAVLRSKKIRESVLDDFAGLGPVR 447 Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 L ++ S + V G +A + F Sbjct: 448 RAA---LLAHFGSIDRLRAA----------SIEEIGEVEGFGPKLAAELHAFLA 488 >gi|150392192|ref|YP_001322241.1| DNA integrity scanning protein DisA [Alkaliphilus metalliredigens QYMF] gi|149952054|gb|ABR50582.1| protein of unknown function DUF147 [Alkaliphilus metalliredigens QYMF] Length = 358 Score = 40.5 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 10/69 (14%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I + + +L + S+Q + L V +G+I A+AI E + Sbjct: 298 IPRLPRSVVENLVNQFPSFQKILKA----------SIEKLDEVEGIGEIRARAIKEGLRR 347 Query: 619 PRNICAVEA 627 + ++ Sbjct: 348 LQEQVLLDR 356 >gi|15893799|ref|NP_347148.1| excinuclease ABC subunit C [Clostridium acetobutylicum ATCC 824] gi|21363070|sp|Q97LP6|UVRC_CLOAB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|15023370|gb|AAK78488.1|AE007565_7 Excinuclease ABC subunit C [Clostridium acetobutylicum ATCC 824] gi|325507922|gb|ADZ19558.1| excinuclease ABC subunit C [Clostridium acetobutylicum EA 2018] Length = 623 Score = 40.5 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%), Gaps = 10/60 (16%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I ++G + ++L K++ S +N + + L++ P + A++IV +++ Sbjct: 569 DIPYIGEKRRKALLKHFGSIENIKKAT----------YEELMKTPSIDKKAAESIVSYFR 618 >gi|307297547|ref|ZP_07577353.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306916807|gb|EFN47189.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 256 Score = 40.5 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%) Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 ++N +I N D LSL +P +G+ A+AIVEF + + + LLK Sbjct: 116 LADVNTLIDINKADVLSLQDIPGIGEAKAKAIVEFREKNGSFRTSDDLLKVPGIGPSILS 175 Query: 641 KNVSSEI 647 + ++S + Sbjct: 176 EILASIV 182 >gi|260102980|ref|ZP_05753217.1| DNA polymerase III [Lactobacillus helveticus DSM 20075] gi|260083211|gb|EEW67331.1| DNA polymerase III [Lactobacillus helveticus DSM 20075] gi|328464560|gb|EGF35931.1| DNA polymerase III [Lactobacillus helveticus MTCC 5463] Length = 317 Score = 40.5 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 29/128 (22%) Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVS----------SEIENKKLVFTGTLQKIQRHKAQ 667 N N E LL++ I + + +++K +V +G L + + A Sbjct: 192 NDFNQHFTEDLLEQAIGKIKNVDLTGDEVDYYQLGFRNPVQDKNIVLSGNL-HMDQRDAG 250 Query: 668 EYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQQL-----GVKIMNEEQ 713 + + +G + + + T+ +I+G ++ L +A L +K ++E Sbjct: 251 KMINNMGGQLDQNVEKTTNYLIMGDHDFFRKNNED----LNRAHLLIKDGAKIKRLSESF 306 Query: 714 FLFLLQQY 721 FL +L + Sbjct: 307 FLSMLDDW 314 >gi|46126951|ref|XP_388029.1| hypothetical protein FG07853.1 [Gibberella zeae PH-1] Length = 765 Score = 40.5 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 40/89 (44%), Gaps = 8/89 (8%) Query: 640 EKNVSSEIENKKLVFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-- 694 ++ S+ + +V +G + R + GA V +S++ ++V + Sbjct: 490 DELKSNVLSGLVIVLSGLVPLGVRVEESEIGLQAQSYGAQVLDTVSKRVTHLVV-SSARP 548 Query: 695 -GSKLEKAQQL-GVKIMNEEQFLFLLQQY 721 K+++A ++ +KI+N+ + L Q+ Sbjct: 549 RTKKVQQAAKIASIKIVNQNWLIDCLSQW 577 >gi|300087916|ref|YP_003758438.1| methenyltetrahydrofolate cyclohydrolase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527649|gb|ADJ26117.1| Methenyltetrahydrofolate cyclohydrolase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 295 Score = 40.5 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 22/83 (26%) Query: 663 RHKAQE---YVTQLGAVVSAILSRKTDIIIVGDNP------GSKLEKAQQLGV-----KI 708 R + + + +V +IVGD+P GSK+ ++LG+ + Sbjct: 16 REELKAEVAALKDRHGIVPG-----LATVIVGDDPASQTYVGSKIRACKELGIHSANFPM 70 Query: 709 M---NEEQFLFLLQQYNTTLRIH 728 + E + L L+ + NT IH Sbjct: 71 LAETTEVELLELIDRLNTDPAIH 93 >gi|225076037|ref|ZP_03719236.1| hypothetical protein NEIFLAOT_01064 [Neisseria flavescens NRL30031/H210] gi|224952631|gb|EEG33840.1| hypothetical protein NEIFLAOT_01064 [Neisseria flavescens NRL30031/H210] Length = 108 Score = 40.5 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 3/86 (3%) Query: 559 IRHVGAEIARSLAKYY--LSYQNFAQE-INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 + + ++L K + ++ + N + L +P +G A++IVE+ Sbjct: 2 TDSIKYVMGKNLMKKFLFGAFAAVCAAFSLAAVNINTASSVELEALPGIGPAKAKSIVEY 61 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEK 641 Q +VE L K Sbjct: 62 RQKNGAFKSVEELKNVKGIGDAVLNK 87 >gi|195121496|ref|XP_002005256.1| GI20391 [Drosophila mojavensis] gi|193910324|gb|EDW09191.1| GI20391 [Drosophila mojavensis] Length = 880 Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 12/72 (16%) Query: 647 IENKKLVFTG------TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLE 699 + + LVF+G L++ R LGA V + +S+ ++ N G+ K+ Sbjct: 589 LRGQVLVFSGLVPTQMKLEQ-SRAYF--IAKSLGAEVQSNISKDVTHLVA-VNAGTYKVN 644 Query: 700 KA-QQLGVKIMN 710 A ++ +K++N Sbjct: 645 AAKKEPNIKVVN 656 >gi|255528215|ref|ZP_05395036.1| competence protein ComEA helix-hairpin-helix repeat protein [Clostridium carboxidivorans P7] gi|255508088|gb|EET84507.1| competence protein ComEA helix-hairpin-helix repeat protein [Clostridium carboxidivorans P7] Length = 183 Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 39/107 (36%) Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 ++ + ++L + + +V + ++L N + + N Sbjct: 72 GFNETADKAKLNLAKKLKDEDYIYVDKQNDKNLPASSGGNANSNPASDGKVNINTATKEQ 131 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 L V +GD+ AQ I+++ + + ++E L K EK Sbjct: 132 LKTVSGIGDVTAQKIIDYREKNGSFNSIEDLKKVGRIGDKTLEKIKD 178 >gi|85717519|ref|ZP_01048465.1| Helicase RecD/TraA [Nitrobacter sp. Nb-311A] gi|85695672|gb|EAQ33584.1| Helicase RecD/TraA [Nitrobacter sp. Nb-311A] Length = 740 Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 42/124 (33%), Gaps = 10/124 (8%) Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT-NLYDSINKRRNISLERFIFSLGIRH 561 + T+ + + + + + + + +E+++ S IR Sbjct: 42 LVTTVGHAATISAGEWITASGVWINDRTHGLQFKAHFLKTSAPSSIEGIEKYLGSGMIRG 101 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 +GA A+ L K + ++ + L V +G I A I+ + + + Sbjct: 102 IGAVYAKRLVKQFG---------KDVFDIIEETPERLREVEGIGPIRAARIISGWADQKV 152 Query: 622 ICAV 625 I + Sbjct: 153 IREI 156 >gi|150015019|ref|YP_001307273.1| DNA integrity scanning protein DisA [Clostridium beijerinckii NCIMB 8052] gi|189083125|sp|A6LPN7|DISA_CLOB8 RecName: Full=DNA integrity scanning protein disA gi|149901484|gb|ABR32317.1| protein of unknown function DUF147 [Clostridium beijerinckii NCIMB 8052] Length = 354 Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 20/51 (39%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 N +E + + D L V +G+ A AI + + + +++ Sbjct: 302 IDNLIKEFEELSNIIDADINDLDNVEGIGEARATAIKDGLKRIKEQVSLKK 352 >gi|49388337|dbj|BAD25449.1| putative seed maturation protein [Oryza sativa Japonica Group] Length = 737 Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 11/94 (11%), Positives = 32/94 (34%), Gaps = 15/94 (15%) Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH--KAQEYVTQLGAVVSAILSRKT 685 L ++ + + + +G ++ R +E + + G V+ + Sbjct: 90 LKQQEGNKYPKRNLDDEGIFSGMMIALSG---RMSRSHGYFKEQIMKHGGKVNNSVIG-V 145 Query: 686 DIIIV-------GDNPGSKLEKAQQLGVKIMNEE 712 ++ G + G +A + G +++E Sbjct: 146 TCVVASPAERHQGGSGG--FAEALERGTPVVSEN 177 >gi|291550845|emb|CBL27107.1| competence protein ComEA helix-hairpin-helix repeat region [Ruminococcus torques L2-14] Length = 233 Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642 +++ I N L+ + +G A++I+++ Q N ++E L K G K Sbjct: 168 SVSDKININTAAKEELMTLSGIGASKAESILKYRQEHGNFQSIEDLKKIEGIKDGVFNKI 227 Query: 643 VS 644 Sbjct: 228 KD 229 >gi|119961905|ref|YP_946007.1| DNA integrity scanning protein DisA [Arthrobacter aurescens TC1] gi|119948764|gb|ABM07675.1| putative DNA-binding protein [Arthrobacter aurescens TC1] Length = 358 Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 10/72 (13%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 G++ V +A L Y+ QN L+ V +GD A+ + E Sbjct: 297 GLKSVPKAVADRLVDYFGGLQNLMAAT----------IDDLMTVDGIGDQRARTVREGLS 346 Query: 618 NPRNICAVEALL 629 ++ L Sbjct: 347 RMAEASLLDRFL 358 >gi|119703755|ref|NP_002283.3| laminin subunit beta-2 precursor [Homo sapiens] gi|156630892|sp|P55268|LAMB2_HUMAN RecName: Full=Laminin subunit beta-2; AltName: Full=Laminin B1s chain; AltName: Full=Laminin-11 subunit beta; AltName: Full=Laminin-14 subunit beta; AltName: Full=Laminin-15 subunit beta; AltName: Full=Laminin-3 subunit beta; AltName: Full=Laminin-4 subunit beta; AltName: Full=Laminin-7 subunit beta; AltName: Full=Laminin-9 subunit beta; AltName: Full=S-laminin subunit beta; Short=S-LAM beta; Flags: Precursor gi|119585362|gb|EAW64958.1| laminin, beta 2 (laminin S), isoform CRA_a [Homo sapiens] gi|119585363|gb|EAW64959.1| laminin, beta 2 (laminin S), isoform CRA_a [Homo sapiens] gi|225000494|gb|AAI72384.1| Laminin, beta 2 (laminin S) [synthetic construct] Length = 1798 Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 41/493 (8%), Positives = 76/493 (15%), Gaps = 66/493 (13%) Query: 157 GHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN--------DEMIAV 208 G G C E K L + Sbjct: 807 GVVGRRCDLCAPGYYGFGPTGCQACQCSHEGALSSLCEKTSGQCLCRTGAFGLRCDRCQR 866 Query: 209 GRKPYANPRNAAS------------GILRRLNPTDITRYLNFF---------VHGLGKTS 247 G+ + + R L + T +G Sbjct: 867 GQWGFPSCRPCVCNGHADECNTHTGACLGCRDHTGGEHCERCIAGFHGDPRLPYGGQCRP 926 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE----------MKSIRSTLPY 297 +G + + G E + Sbjct: 927 CPCPEGPGSQRHFATSCHQDEYSQQIVCHCRAGYTGLRCEACAPGHFGDPSRPGGRCQLC 986 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 + G + +D + G+ R Q Sbjct: 987 ECSGNIDPMDPDACDPHTGQCLRC-LHHTEGPHCAHCKPGFHGQAARQSCHR-------- 1037 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI---RVGDRVLVKRAGEVIPKVV 414 N+ G ++ + + + R +G Sbjct: 1038 -CTCNLLGTNPQQCPSPDQCHCDPSSGQCPCLPNVQGPSCDRCAPNFWNLTSGHGCQPCA 1096 Query: 415 DIIVNERHPDAQPFSFPSFCPIC-----QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 R P F+ C S G A C + Q Sbjct: 1097 CHPSRARGPTCNEFTGQCHCRAGFGGRTCSECQELHWGDPGLQCHACDCDSRGIDTPQCH 1156 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529 H R + + + Sbjct: 1157 RFTGHCSCRPGVSGVRCDQ------CARGFSGIFPACHPCHACFGDWDRVVQDLAARTQR 1210 Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 + + S LGI + A S + + Sbjct: 1211 LEQRAQELQQTGVLGAFESSFWHMQEKLGIVQGIVGARNTSAA---STAQLVEATEELRR 1267 Query: 590 HNNDDWLSLIRVP 602 + L ++ Sbjct: 1268 EIGEATEHLTQLE 1280 >gi|1103585|emb|CAA92279.1| laminin beta 2 chain [Homo sapiens] Length = 1798 Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 41/493 (8%), Positives = 76/493 (15%), Gaps = 66/493 (13%) Query: 157 GHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN--------DEMIAV 208 G G C E K L + Sbjct: 807 GVVGRRCDLCAPGYYGFGPTGCQACQCSHEGALSSLCEKTSGQCLCRTGAFGLRCDRCQR 866 Query: 209 GRKPYANPRNAAS------------GILRRLNPTDITRYLNFF---------VHGLGKTS 247 G+ + + R L + T +G Sbjct: 867 GQWGFPSCRPCVCNGHADECNTHTGACLGCRDHTGGEHCERCIAGFHRDPRLPYGGQCRP 926 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE----------MKSIRSTLPY 297 +G + + G E + Sbjct: 927 CPCPEGPGSQRHFATSCHQDEYSQQIVCHCRAGYTGLRCEACAPGHFGDPSRPGGRCQLC 986 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 + G + +D + G+ R Q Sbjct: 987 ECSGNIDPMDPDACDPHTGQCLRC-LHHTEGPHCAHCKPGFHGQAARQSCHR-------- 1037 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI---RVGDRVLVKRAGEVIPKVV 414 N+ G ++ + + + R +G Sbjct: 1038 -CTCNLLGTNPQQCPSPDQCHCDPSSGQCPCLPNVQGPSCDRCAPNFWNLTSGHGCQPCA 1096 Query: 415 DIIVNERHPDAQPFSFPSFCPIC-----QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 R P F+ C S G A C + Q Sbjct: 1097 CHPSRARGPTCNEFTGQCHCRAGFGGRTCSECQELHWGDPGLQCHACDCDSRGIDTPQCH 1156 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529 H R + + + Sbjct: 1157 RFTGHCSCRPGVSGVRCDQ------CARGFSGIFPACHPCHACFGDWDRVVQDLAARTQR 1210 Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 + + S LGI + A S + + Sbjct: 1211 LEQRAQELQQTGVLGAFESSFWHMQEKLGIVQGIVGARNTSAA---STAQLVEATEELRR 1267 Query: 590 HNNDDWLSLIRVP 602 + L ++ Sbjct: 1268 EIGEATEHLTQLE 1280 >gi|325087549|gb|EGC40859.1| RNA polymerase II C-terminal domain phosphatase component [Ajellomyces capsulatus H88] Length = 885 Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 4/74 (5%) Query: 653 VFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKI 708 VF+G L + GA++S +S KT ++ G N +K+ +A + +KI Sbjct: 501 VFSGVLPLGTDTQNADISLWAKSFGAIISQKISSKTTHLVAGRNRTAKVREATRYPNIKI 560 Query: 709 MNEEQFLFLLQQYN 722 + + L + Q+ Sbjct: 561 VTVQWLLDSITQWK 574 >gi|315607498|ref|ZP_07882493.1| M16 family peptidase [Prevotella buccae ATCC 33574] gi|315250681|gb|EFU30675.1| M16 family peptidase [Prevotella buccae ATCC 33574] Length = 941 Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 37/124 (29%), Gaps = 26/124 (20%) Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623 E A+ L S ++ + L + + A+ I + N +N Sbjct: 450 NEAAKELITESDSNLVITAQVQEKEGKTYNTVADLKST--IAKVRAEQIAAYVDNVKNEP 507 Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 + L K+ + +K + ++ + GA V + + Sbjct: 508 LISQLPKKGKITKETEDKKLG---------------------FKKLILSNGAKV---ILK 543 Query: 684 KTDI 687 KTD Sbjct: 544 KTDF 547 >gi|289425248|ref|ZP_06427025.1| comEA protein [Propionibacterium acnes SK187] gi|289154226|gb|EFD02914.1| comEA protein [Propionibacterium acnes SK187] Length = 283 Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 21/61 (34%) Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 + N + L + VG ++A I+ + Q +V+ L + EK Sbjct: 220 KAPVNLNTANQSELETIDGVGPVMAGNIMAWRQEHGQFASVDQLREISGIGAKTFEKIKP 279 Query: 645 S 645 Sbjct: 280 H 280 >gi|281206665|gb|EFA80851.1| putative tfiif-interacting component of the c-terminal domain phosphatase [Polysphondylium pallidum PN500] Length = 881 Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 5/74 (6%) Query: 643 VSSEIENKKLVFTGT----LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698 + LVF+G L R + +LGA V ++ T ++ SK+ Sbjct: 585 KKKILNGVNLVFSGVYPLQLPAH-RQPLRLLAEELGATVQNDITNTTTHVVAARKGTSKV 643 Query: 699 EKAQQLGVKIMNEE 712 KA G+KI+N+ Sbjct: 644 HKAISKGLKIVNQN 657 >gi|255657363|ref|ZP_05402772.1| excinuclease ABC subunit C [Clostridium difficile QCD-23m63] gi|296451823|ref|ZP_06893542.1| excision endonuclease subunit UvrC [Clostridium difficile NAP08] gi|296879781|ref|ZP_06903755.1| excision endonuclease subunit UvrC [Clostridium difficile NAP07] gi|296259302|gb|EFH06178.1| excision endonuclease subunit UvrC [Clostridium difficile NAP08] gi|296429252|gb|EFH15125.1| excision endonuclease subunit UvrC [Clostridium difficile NAP07] Length = 605 Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 10/64 (15%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I+ +G + +SL ++ + L+ V + IA + F++ Sbjct: 552 DIQGIGEKRKKSLLNHFKDVDAIKKAT----------MEELLEVDGMNKSIADNVYNFFR 601 Query: 618 NPRN 621 N Sbjct: 602 KEAN 605 >gi|307210677|gb|EFN87100.1| Laminin subunit beta-1 [Harpegnathos saltator] Length = 1700 Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 38/495 (7%), Positives = 95/495 (19%), Gaps = 34/495 (6%) Query: 160 GEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNA 219 G + T N + E + Sbjct: 751 GVGALDNFCDVETGRCKCRRNTYGRTCGQCEPGFWNFPHCQRCECNGHADSCDPKTGACI 810 Query: 220 ASGILRRLNPTDITRYLNFF--VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANT 277 + D + G+ G +++ + Sbjct: 811 NCRDYTTGHNCDRCIDTFYGDPRIGVDIPCRACPCPGTLGSGHSYADGCSLDSITQDVVC 870 Query: 278 FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAST 337 + + + + R P H Q Sbjct: 871 ECFEGYAGPRCEHCAENYF--GNPEISGGSCIRCECNNNTDLRQPGNCDPHNGRCLQCLH 928 Query: 338 RLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRV 397 + QI + G D R Sbjct: 929 NTDGFNCQICK---PGFYGNALRQECQDCSCN-------------VLGTDKAAGPCDHRT 972 Query: 398 GDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR 457 G + P V+ + + + + C C+ V ++ + Sbjct: 973 GQCPCL-------PHVIGQLCDSCEENHWRIASGEGCDPCECDAVGSVSDRCNPYDGTCE 1025 Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ 517 C G + + + + + + + + ++ Sbjct: 1026 CRPGFGGRRCNECQTNFWGNPNIECYPCECDVIGSASQQCDRETG-VCVCHKGIGGEKCD 1084 Query: 518 QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577 Q + + + R + ++ + Sbjct: 1085 QCDRGYHGEAPQCSPCGECFDNWDLILSGLRNKTDVVIDEASRIQKVGTSGVYSQEFDDM 1144 Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI-CAVEALLKEVSPSI 636 + EI +I++ L + I+A + V LL+ VS + Sbjct: 1145 EKSLNEIKALISNTTIRGQDLDALD----ILAAGLERNISESAQQLENVNNLLENVSQRV 1200 Query: 637 GRHEKNVSSEIENKK 651 + + ++N+ Sbjct: 1201 NLGDVALKG-LKNRT 1214 >gi|217967867|ref|YP_002353373.1| excinuclease ABC, C subunit [Dictyoglomus turgidum DSM 6724] gi|217336966|gb|ACK42759.1| excinuclease ABC, C subunit [Dictyoglomus turgidum DSM 6724] Length = 598 Score = 40.2 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 6/43 (13%), Positives = 18/43 (41%) Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 + + N++ + L ++P + + IA+ I ++ Sbjct: 553 KRMKILLEAFNDLESLKKASLEDLKKIPGISEKIAEKIYLYFH 595 >gi|200389057|ref|ZP_03215669.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199606155|gb|EDZ04700.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 62 Score = 40.2 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 E V + +++ ++ G N G SK+ A+ G I++EE F+ ++ Sbjct: 1 MIEVAEAHSMTVRSSVTQNLQMLCCGYNAGPSKVNAARMKGTIIIDEESFVHFIE 55 >gi|115871967|ref|XP_785636.2| PREDICTED: similar to PAXIP1 protein [Strongylocentrotus purpuratus] Length = 627 Score = 40.2 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 +++ + TG + +R+ + + GA + SR ++I G+K EKAQ+ Sbjct: 349 PCKDQIIAVTG-FEGGERNDVKTMIEMTGAKYTGFFSRGNTLLICKRLEGAKYEKAQE 405 >gi|222056019|ref|YP_002538381.1| Helix-hairpin-helix DNA-binding class 1 [Geobacter sp. FRC-32] gi|221565308|gb|ACM21280.1| Helix-hairpin-helix DNA-binding class 1 [Geobacter sp. FRC-32] Length = 189 Score = 40.2 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 ++ DDW +L P +G A+ IV + Q+ C++E L S G+ EK Sbjct: 129 DLGLMEEDDWEAL---PGIGPTTAKDIVNYRQDNGGFCSIEELKSVKGISEGKVEK 181 >gi|239831533|ref|ZP_04679862.1| excinuclease ABC, C subunit [Ochrobactrum intermedium LMG 3301] gi|239823800|gb|EEQ95368.1| excinuclease ABC, C subunit [Ochrobactrum intermedium LMG 3301] Length = 702 Score = 40.2 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 13/110 (11%), Positives = 32/110 (29%), Gaps = 15/110 (13%) Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 FTL R ++ R I +G R Sbjct: 607 QAFTLPPRDPVLYFIQRLRD-----EAHRFAIGTHRARRKKEMVKNPLDEIAGIGPSRKR 661 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 +L ++ + A + L+++ + + +A+ I + +++ Sbjct: 662 ALLHHFGT----------AKAVSRAAVEDLMQIDGISEAMARTIHDHFRD 701 >gi|313205089|ref|YP_004043746.1| cytoplasmic peptidoglycan synthetase domain protein [Paludibacter propionicigenes WB4] gi|312444405|gb|ADQ80761.1| cytoplasmic peptidoglycan synthetase domain protein [Paludibacter propionicigenes WB4] Length = 486 Score = 40.2 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 36/74 (48%), Gaps = 13/74 (17%) Query: 664 HKAQEYVTQLG-------AVVSAILSRKTDIIIVG---DNPGSKLEKAQQLGVKIMNEEQ 713 ++ +E + G + ++ +TD+++ ++ +++KA++L + I+ + Sbjct: 75 NETREKLEAEGILCFLQDG---SGITAQTDLVVASTAIEDTVFEVQKAKELNIPILRRSE 131 Query: 714 FLFLLQQYNTTLRI 727 L L+ + T+ + Sbjct: 132 VLALIAESKKTIAV 145 >gi|225677466|gb|EEH15750.1| S-M checkpoint control protein Rad4p [Paracoccidioides brasiliensis Pb03] Length = 880 Score = 40.2 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 7/95 (7%) Query: 628 LLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKT 685 + P++ E+ + TG + + R+ Q +T+ G L++ Sbjct: 88 WMLGGDPNLEELEEQYRYPTFAGLSICLTG-FEDMNTRNHLQRTITENGGEFRRDLTKSV 146 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +I G K + A + +++ L L+ Sbjct: 147 THLIARSGCGQKYKYATLWKITVVS----LKWLED 177 >gi|254409654|ref|ZP_05023435.1| excinuclease ABC, C subunit [Microcoleus chthonoplastes PCC 7420] gi|196183651|gb|EDX78634.1| excinuclease ABC, C subunit [Microcoleus chthonoplastes PCC 7420] Length = 675 Score = 40.2 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 10/50 (20%) Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 + L ++ S + L VP +G +A+ I ++ Sbjct: 635 KQLLAHFRSIDYIREA----------SVQQLAEVPGIGSRLAEDIYTYFH 674 >gi|227894158|ref|ZP_04011963.1| DNA polymerase III [Lactobacillus ultunensis DSM 16047] gi|227864030|gb|EEJ71451.1| DNA polymerase III [Lactobacillus ultunensis DSM 16047] Length = 318 Score = 40.2 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 29/128 (22%) Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVS----------SEIENKKLVFTGTLQKIQRHKAQ 667 N N E LL+ I + + ++NK +V +G + + +++A Sbjct: 193 NDFNKHFTEELLEAARSRIKNFDLTGDELDYYQLGFRNPVQNKDIVLSGHI-HMDQNEAN 251 Query: 668 EYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQQL-----GVKIMNEEQ 713 + + +G V + T+ +I+G ++ L A+ L +K ++E Sbjct: 252 KMIGNMGGTVDDGVLATTNYLIMGDHDFFRKDNED----LNTARDLIKNGAKIKRLSESF 307 Query: 714 FLFLLQQY 721 FL +L + Sbjct: 308 FLGMLDDW 315 >gi|8170714|gb|AAB34682.2| laminin beta 2 chain [Homo sapiens] Length = 1798 Score = 40.2 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 48/494 (9%), Positives = 86/494 (17%), Gaps = 59/494 (11%) Query: 157 GHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN--------DEMIAV 208 G G C E K L + Sbjct: 807 GVVGRRCDLCAPGYYGFGPTGCQACQCSHEGALSSLCEKTSGQCLCRTGAFGLRCDRCQR 866 Query: 209 GRKPYANPRNAAS------------GILRRLNPTDITRYLNFF---------VHGLGKTS 247 G+ + + R L + T +G Sbjct: 867 GQWGFPSCRPCVCNGHADECNTHTGACLGCRDHTGGEHCERCIAGFHGDPRLPYGGQCRP 926 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE----------MKSIRSTLPY 297 +G + + G E + Sbjct: 927 CPCPEGPGSQRHFATSCHQDEYSQQIVCHCRAGYTGLRCEACAPGHFGDPSRPGGRCQLC 986 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 + G + +D + G+ R Q Sbjct: 987 ECSGNIDPMDPDACDPHTGQCLRC-LHHTEGPHCAHCKPGFHGQAARQSCHR-------- 1037 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI---RVGDRVLVKRAGEVIPKVV 414 N+ G ++ + + + R +G Sbjct: 1038 -CTCNLLGTNPQQCPSPDQCHCDPSSGQCPCLPNVQGPSCDRCAPNFWNLTSGHGCQPCA 1096 Query: 415 DIIVNERHPDAQPFSFPSFCPIC-----QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 R P F+ C S G A C + Q Sbjct: 1097 CHPSRARGPTCNEFTGQCHCRAGFGGRTCSECQELHWGDPGLQCHACDCDSRGIDTPQCH 1156 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529 H R + + F + + Q + Sbjct: 1157 RFTGHCSCRPGVSGVRCDQ-CARAFSGIFPACHPCHACFGDWD-RVVQDLAARTQRLEQR 1214 Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 ++ T + + E+ GI A S A+ + + +EI Sbjct: 1215 AQELQQTGVLGAFESSFWHMQEKLGIVQGIVGARNTSAASTAQLVEATEELRREIGEATE 1274 Query: 590 HNNDDWLSLIRVPL 603 H L V Sbjct: 1275 HLTQLEADLTDVQD 1288 >gi|73964255|ref|XP_537500.2| PREDICTED: similar to a disintegrin and metalloproteinase domain 21 preproprotein [Canis familiaris] Length = 1476 Score = 40.2 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 37/286 (12%), Positives = 68/286 (23%), Gaps = 17/286 (5%) Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259 ++ N + + +N L T + A Q+ + Sbjct: 429 CIHSPPYPGNVFKVQYCGNLVIEEGEECDCGTTDQCVNDPCCLLNCTLKPGAACQFGICC 488 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 K L P R + + + N Y DG+ + + + + Sbjct: 489 KDCKL-MPSGTLCRHQISECDLPEWCNGTFHQCPEDVYVQDGIPCGDNAYCYEGRCNNHD 547 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV-ARLEPVNIGGALITNATLHNEDY 378 + I K A + + +I+ Q R G L N + Sbjct: 548 KQ-CREIFGKDARSASQSCYKEINTQGNRFGHCGITNLVYVKCEGPDILCGRVQCENVEM 606 Query: 379 IKGLDASGKVMRGGRD--IRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 I L V + + G + G IP V + + + Sbjct: 607 IPNLIQHSTVHQLHINDTTCWGTDFHL---GMSIPDVGQVKDGTICGPEKICLHKKCVNM 663 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 N C C+ +Q KH + Sbjct: 664 TYPPRKCHSNET---------CHMHGVCNNKQHCHCKHGWAPPYCK 700 >gi|296479253|gb|DAA21368.1| poly [ADP-ribose] polymerase 1 [Bos taurus] Length = 1016 Score = 40.2 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 19/83 (22%) Query: 644 SSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAI-------LSRK--TDIIIVGDN 693 + N K+ T G L + + + + + +LG ++ +S K D Sbjct: 389 DKPLSNMKI-LTLGKLSQ-NKDEVKATIEKLGGKLTGTANKASLCISTKKEVD------K 440 Query: 694 PGSKLEKAQQLGVKIMNEEQFLF 716 K+E+ ++ +++++E+ FL Sbjct: 441 MNKKMEEVKEANIRVVSED-FLQ 462 >gi|269836449|ref|YP_003318677.1| excinuclease ABC, C subunit [Sphaerobacter thermophilus DSM 20745] gi|269785712|gb|ACZ37855.1| excinuclease ABC, C subunit [Sphaerobacter thermophilus DSM 20745] Length = 609 Score = 40.2 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 10/79 (12%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 + +++R G++ VG ++L K + S Q Sbjct: 537 HRFAVTFHRKRRTKSTFRSALDGLKGVGPARRKALLKTFGSVARIRQA----------SV 586 Query: 596 LSLIRVPLVGDIIAQAIVE 614 L VP +G +A+ I E Sbjct: 587 EELAAVPGIGPRLAEQIKE 605 >gi|156378154|ref|XP_001631009.1| predicted protein [Nematostella vectensis] gi|156218041|gb|EDO38946.1| predicted protein [Nematostella vectensis] Length = 1428 Score = 40.2 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT-DIIIVGDNPGSKLEKAQQL 704 + + TG L R + ++ Q G V S L+ T ++V G K E A++ Sbjct: 147 IFKGCTICVTG-LDAQTRQEVKQLCNQNGGVYSGELNMNTCTHLLVNQPKGEKYEFARKW 205 Query: 705 GV 706 + Sbjct: 206 NI 207 >gi|13357937|ref|NP_078211.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762156|ref|YP_001752460.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|13959349|sp|Q9PQB4|DPO3_UREPA RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|11279168|pir||C82898 DNA polymerase III alpha chain 1 UU377 [imported] - Ureaplasma urealyticum gi|6899360|gb|AAF30786.1|AE002135_2 DNA polymerase III alpha chain 1 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827733|gb|ACA32995.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 3 str. ATCC 27815] Length = 1442 Score = 40.2 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 47/127 (37%), Gaps = 15/127 (11%) Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----SYQNFAQEINNIIAHNNDDW 595 + +K R+ + L ++ + + LA+ + S + I NN Sbjct: 1319 EQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKENNAII 1378 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655 I + +G+ +A +I+E +N + +E L S ++N +++ Sbjct: 1379 PPFIAIQGLGETVANSIIEA-RNQKVFSTIEDLKNRTKISRTD--------LKNLRVL-- 1427 Query: 656 GTLQKIQ 662 G L + Sbjct: 1428 GVLDHLS 1434 >gi|71019605|ref|XP_760033.1| hypothetical protein UM03886.1 [Ustilago maydis 521] gi|46099826|gb|EAK85059.1| hypothetical protein UM03886.1 [Ustilago maydis 521] Length = 919 Score = 40.2 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 24/49 (48%) Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 R + + +GA S LS +T I + + K +KA++ V I+N Sbjct: 405 TRQYLTKMIKLMGATFSGALSARTSICVAANLDSEKTQKAKEWKVPIVN 453 >gi|183508608|ref|ZP_02958116.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|182676065|gb|EDT87970.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 1442 Score = 40.2 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 5/95 (5%) Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----SYQNFAQEINNIIAHNNDDW 595 + +K R+ + L ++ + + LA+ + S + I NN Sbjct: 1319 EQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKENNAII 1378 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 I + +G+ +A +I+E +N + +E L Sbjct: 1379 PPFIAIQGLGETVANSIIEA-RNQKVFSTIEDLKN 1412 >gi|302391529|ref|YP_003827349.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetohalobium arabaticum DSM 5501] gi|302203606|gb|ADL12284.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetohalobium arabaticum DSM 5501] Length = 454 Score = 40.2 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 673 LGAVVSAILSRKTDIIIVGDNPGSK---LEKAQQLGVKIMNEEQF 714 LG S+ ++ TD+I+V S LEKAQ LG+ +++E + Sbjct: 59 LGGH-SSKVTDNTDLIVVSPGVPSDIPILEKAQSLGIPVISEIEL 102 >gi|291522757|emb|CBK81050.1| competence protein ComEA helix-hairpin-helix repeat region [Coprococcus catus GD/7] Length = 209 Score = 40.2 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%) Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638 + N ++ N L +P +G A AIV + +N N ++E L K G Sbjct: 142 EVSNGLVNINTATAEQLQTLPGIGQAKANAIVAYRENNGNFSSIEDLRKVPGIKEGV 198 >gi|331229715|ref|XP_003327523.1| hypothetical protein PGTG_09057 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309306513|gb|EFP83104.1| hypothetical protein PGTG_09057 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1291 Score = 40.2 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 26/48 (54%) Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 R + + ++ S L + T +++ + GSK++ A + G++I+N Sbjct: 524 RAHLIKLIEKMHMTFSGALDQNTFMVVAANKAGSKVDFANKSGIQIVN 571 >gi|224823841|ref|ZP_03696950.1| competence protein ComEA helix-hairpin-helix repeat protein [Lutiella nitroferrum 2002] gi|224604296|gb|EEG10470.1| competence protein ComEA helix-hairpin-helix repeat protein [Lutiella nitroferrum 2002] Length = 119 Score = 40.2 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 1/86 (1%) Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 + L S F I N L + +G A+AI+++ V+ Sbjct: 1 MKKLLLILASVLAFCSSAMAAINLNTATQQELESLNGIGPAKAKAIMDYRTKQGPFKTVD 60 Query: 627 ALLKEVSPSIGRHEK-NVSSEIENKK 651 L EK + K Sbjct: 61 ELKNVPGIGDKTLEKLRKDIAVSGKS 86 >gi|307244714|ref|ZP_07526816.1| DNA integrity scanning family protein [Peptostreptococcus stomatis DSM 17678] gi|306491891|gb|EFM63942.1| DNA integrity scanning family protein [Peptostreptococcus stomatis DSM 17678] Length = 358 Score = 40.2 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 10/69 (14%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I + I +L +++ S+Q+ + L V +G+I A I Sbjct: 298 IHKLPEGIIDNLIEHFGSFQDILEA----------SIEELDEVDGIGEIRATYIRNGLIK 347 Query: 619 PRNICAVEA 627 + + ++ Sbjct: 348 MKRLAVLDR 356 >gi|253681767|ref|ZP_04862564.1| excinuclease ABC subunit C [Clostridium botulinum D str. 1873] gi|253561479|gb|EES90931.1| excinuclease ABC subunit C [Clostridium botulinum D str. 1873] Length = 622 Score = 40.2 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 11/64 (17%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I ++G + + L K + S N + + L+ + + A +I++++ Sbjct: 569 DIPNIGIKRRKELLKKFGSIDNIKKA----------SYNELLSTDSINEKAATSIIDYF- 617 Query: 618 NPRN 621 N N Sbjct: 618 NKHN 621 >gi|222151870|ref|YP_002561030.1| hypothetical protein MCCL_1627 [Macrococcus caseolyticus JCSC5402] gi|222120999|dbj|BAH18334.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 297 Score = 40.2 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + + N NK++ TGTL ++R +Y+ G Sbjct: 202 ITPDTSKVNKDHLFYNKRIAITGTL-HMKRKDIVQYIVNNGG 242 >gi|50550359|ref|XP_502652.1| YALI0D10285p [Yarrowia lipolytica] gi|49648520|emb|CAG80840.1| YALI0D10285p [Yarrowia lipolytica] Length = 818 Score = 40.2 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 27/333 (8%), Positives = 58/333 (17%), Gaps = 18/333 (5%) Query: 166 CIRAIPTIPRVLSLNIPEIIEVRGEVYIS--KNDFLALNDEMIAVGRK--PYANPRNAAS 221 A R + EV G Sbjct: 230 MSCACGRSRRQWPCVLTPYKGWSCEVVCGEIMPCGEHTCSRQCHTGLCSVCVETTPAKCF 289 Query: 222 GILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG-VRQANTFHG 280 N T +G ++ + K + P + + Sbjct: 290 CGKTEKNITCHMDEEMQNQNGRYSCEDVCDTLFDCGIHKCEEICHPFVSHECPLIPSRQT 349 Query: 281 IVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRL- 339 V + + P+ S + + ++ Sbjct: 350 HCYCGQTKNEDLGIERTKCTDAVPTCSLTCSKTLSSCDHKCPQKCHSGDCPPCKETVKMH 409 Query: 340 -----LDIDIQIGR------TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388 + G T + + + + ++ Sbjct: 410 CSCGRQTFSVPCGTSETPKCTHKCAALLSCRKHYCMDECCEWEAVAIQREKQRKKTGAQI 469 Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS-FCPICQSRVVRDLNP 447 + P Q S+ CP ++ + Sbjct: 470 PVEEPKHHCEKNCNRLLKCGIHRCPDRCHSGACKPCMQATSWDDVNCPCGRTTTYAPIRC 529 Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 T V A C C ++++ H S Sbjct: 530 GTALEVCAWPCERDPPCGHRRIQHTCHSDSEPC 562 >gi|291393661|ref|XP_002713463.1| PREDICTED: laminin, beta 2 [Oryctolagus cuniculus] Length = 1802 Score = 40.2 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 30/369 (8%), Positives = 56/369 (15%), Gaps = 22/369 (5%) Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 G G + + + +T + P + Sbjct: 933 CPEGPGSQRHFATSCHQDGYSQQIMCHCQAGYTGVRCDTCAPGHFGDP-SRPGGRCQPCE 991 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 G + +D + + G+ R + Q Sbjct: 992 CSGNIDPMDPDACDPRTGQCLRC-LYHTEGPHCAHCKPGFHGQAARQSCHRCTCNL-LGT 1049 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 P L R +G + Sbjct: 1050 NPQQCPSTDQCYCD-PTTGQCPCLPNVQGPSCD----RCAPNFWNLTSGHGCQPCACHLS 1104 Query: 419 NERHPDAQPFSFPSFCPIC-----QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473 R P F+ C S G A C + Q Sbjct: 1105 RARGPTCNEFTGQCHCLAGFGGRTCSECQELHWGDPGLQCRACDCDPRGIDTPQCHRSTG 1164 Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533 H R + + + Sbjct: 1165 HCSCRPGVSGVRCDQ------CARGFSGVFPACYPCHACFGDWDRVVQDLAARTRRLQQR 1218 Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593 + + S LG + A S + + Sbjct: 1219 AQELQQTGVLGAFESSFWDLQEKLGTVQTIVGARNASAA---STARLMEATEELRREIGA 1275 Query: 594 DWLSLIRVP 602 L ++ Sbjct: 1276 ATEHLTQLE 1284 >gi|313224695|emb|CBY20486.1| unnamed protein product [Oikopleura dioica] Length = 1288 Score = 40.2 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%) Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 K + FT + K R Q+ V ++ + + +++ DI++VG+ K A +LG+K + Sbjct: 112 KNVCFT-NVPKEDREALQKKVARMAGYICSTMTQDVDILVVGEASSKKYIVASELGIKTV 170 Query: 710 NEEQFLF 716 F+ Sbjct: 171 T-VDFIK 176 >gi|114567871|ref|YP_755025.1| DNA integrity scanning protein DisA [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338806|gb|ABI69654.1| putative nucleic-acid-binding protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 356 Score = 40.2 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 7/50 (14%), Positives = 17/50 (34%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 N + + L V +G++ A++I + + +E Sbjct: 304 IDNLVERFGLLSNVLRASIEELDDVEGIGEVRARSIKNGLKRMQEQLLLE 353 >gi|333027927|ref|ZP_08455991.1| putative excinuclease ABC subunit C [Streptomyces sp. Tu6071] gi|332747779|gb|EGJ78220.1| putative excinuclease ABC subunit C [Streptomyces sp. Tu6071] Length = 907 Score = 40.2 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 10/82 (12%), Positives = 25/82 (30%), Gaps = 10/82 (12%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 + + + R + +G ++L K++ S + Sbjct: 538 HRFAITYQRSKRAKRFRAGPLDEVPGLGQTRKQALLKHFGSVKKLRAAT----------I 587 Query: 596 LSLIRVPLVGDIIAQAIVEFYQ 617 + VP +G A+ I+ + Sbjct: 588 EQICEVPGIGRKTAETILATFA 609 >gi|313241477|emb|CBY33728.1| unnamed protein product [Oikopleura dioica] Length = 1304 Score = 40.2 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%) Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 K + FT + K R Q+ V ++ + + +++ DI++VG+ K A +LG+K + Sbjct: 112 KNVCFT-NVPKEDREALQKKVARMAGYICSTMTQDVDILVVGEASSKKYIVASELGIKTV 170 Query: 710 NEEQFLF 716 F+ Sbjct: 171 T-VDFIK 176 >gi|241758482|ref|ZP_04756602.1| competence protein ComEA helix-hairpin-helix repeat protein [Neisseria flavescens SK114] gi|241759377|ref|ZP_04757482.1| competence protein ComEA helix-hairpin-helix repeat region [Neisseria flavescens SK114] gi|241759559|ref|ZP_04757662.1| competence protein ComEA helix-hairpin-helix repeat region [Neisseria flavescens SK114] gi|241759963|ref|ZP_04758062.1| competence protein ComEA helix-hairpin-helix repeat region [Neisseria flavescens SK114] gi|241760174|ref|ZP_04758271.1| competence protein ComEA helix-hairpin-helix repeat region [Neisseria flavescens SK114] gi|241319371|gb|EER55829.1| competence protein ComEA helix-hairpin-helix repeat region [Neisseria flavescens SK114] gi|241319649|gb|EER56069.1| competence protein ComEA helix-hairpin-helix repeat region [Neisseria flavescens SK114] gi|241320116|gb|EER56477.1| competence protein ComEA helix-hairpin-helix repeat region [Neisseria flavescens SK114] gi|241320322|gb|EER56641.1| competence protein ComEA helix-hairpin-helix repeat region [Neisseria flavescens SK114] gi|241321385|gb|EER57526.1| competence protein ComEA helix-hairpin-helix repeat protein [Neisseria flavescens SK114] Length = 100 Score = 40.2 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 3/79 (3%) Query: 566 IARSLAKYY--LSYQNFAQE-INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 + ++L K + ++ + N L +P +G A++IVE+ Q Sbjct: 1 MGKNLMKKFLFGAFAAVCAAFSLAAVNINTASSAELEALPGIGPAKAKSIVEYRQKNGAF 60 Query: 623 CAVEALLKEVSPSIGRHEK 641 +VE L K Sbjct: 61 KSVEELKNVKGIGDAVLNK 79 >gi|123476045|ref|XP_001321197.1| Metallothionein family protein [Trichomonas vaginalis G3] gi|121904018|gb|EAY08974.1| Metallothionein family protein [Trichomonas vaginalis G3] Length = 308 Score = 40.2 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 24/302 (7%), Positives = 50/302 (16%), Gaps = 25/302 (8%) Query: 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR 234 + + + +K++ + + N + T + Sbjct: 18 QWFKCQCCPGCKCGSNCHCTKDNKCSPDCHCGEGCNCNEGCYCNEGCKCGSNCHCTKDNK 77 Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 G G K P + N G Sbjct: 78 CSPDCHCGEGCHCNEGCKCGSNCHCTKDNKCSPDCHCGEGCNCNEGCY--------CNEG 129 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS---HKFAEKQASTRLLDIDIQIGRTGI 351 + K ++ S GE K T+ Sbjct: 130 CKCGSNCHCTKDNKCSPDCHCGEGCNCNEGCYCNEGCKCGSNCHCTKDNKC----SPDCH 185 Query: 352 LTPVARLEPVNIGGALITNAT---LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408 G+ + + + + G + + Sbjct: 186 CGEGCHCNEGCKCGSNCHCTKDNKCSPDCHCGEGCNCNEGCYCNEGCKCGSNCHCTKDNK 245 Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 P + + +C K K C G C+ Sbjct: 246 CSPDCHC-------GEGCNCNEGCYCNEGCKCGSNCHCTKDSKCSPDCHCGEGCNCNEGC 298 Query: 469 LE 470 Sbjct: 299 KC 300 Score = 38.6 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 21/279 (7%), Positives = 42/279 (15%), Gaps = 25/279 (8%) Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 + + + + + G K Sbjct: 9 CNKQNAGKSQWFKCQCCPGCKCGSNCHCTKDNKCSPDCHCGEGCNCNEGCYCNEGCKCGS 68 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGI-VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 P + + G P G +E + Sbjct: 69 NCHCTKDNKCSPDCHCGEGCHCNEGCKCGSNCHCTKDNKCSPDCHCGEGCNCNEGCYCNE 128 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDI--DIQIGRTGILTPVARLEPVNIGGALITNAT 372 K T+ D G G+ Sbjct: 129 ------------GCKCGSNCHCTKDNKCSPDCHCGEGCNCNEGCYCNEGCKCGSNCHCTK 176 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 ++ G+ + G + + P + + Sbjct: 177 ---DNKCSPDCHCGEGCHCNEGCKCGSNCHCTKDNKCSPDCHC-------GEGCNCNEGC 226 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +C K K C G C+ Sbjct: 227 YCNEGCKCGSNCHCTKDNKCSPDCHCGEGCNCNEGCYCN 265 >gi|75910493|ref|YP_324789.1| excinuclease ABC subunit C [Anabaena variabilis ATCC 29413] gi|119367626|sp|Q3M542|UVRC_ANAVT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|75704218|gb|ABA23894.1| Excinuclease ABC subunit C [Anabaena variabilis ATCC 29413] Length = 627 Score = 40.2 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 10/62 (16%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I +G + L ++ S Q + VP +G +AQAI +++ Sbjct: 575 IPGLGHHRQKQLLAHFRSVDYIRQATPA----------QIAEVPGIGPHLAQAIYDYFHP 624 Query: 619 PR 620 Sbjct: 625 SH 626 >gi|254451520|ref|ZP_05064957.1| helicase, RecD/TraA family [Octadecabacter antarcticus 238] gi|198265926|gb|EDY90196.1| helicase, RecD/TraA family [Octadecabacter antarcticus 238] Length = 679 Score = 40.2 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 9/81 (11%) Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 +E+++ S IR +G A+ L K + ++ + L V + Sbjct: 35 SSLEGIEKYLGSGMIRGIGPVYAKRLVKKFG---------KDVFDLIEAEPERLREVEGI 85 Query: 605 GDIIAQAIVEFYQNPRNICAV 625 G A I + + + I + Sbjct: 86 GPKRADKITSAWADQKVIREI 106 >gi|317124808|ref|YP_004098920.1| excinuclease ABC subunit C [Intrasporangium calvum DSM 43043] gi|315588896|gb|ADU48193.1| Excinuclease ABC subunit C [Intrasporangium calvum DSM 43043] Length = 709 Score = 40.2 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 10/83 (12%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 + +++R G++ +GA R+L K++ S + + Sbjct: 620 HRFAITFHRQRRSKAMTASALDGVQGLGAARQRALLKHFGSVKRLRAA----------EP 669 Query: 596 LSLIRVPLVGDIIAQAIVEFYQN 618 +++ VP +G +A AIV Sbjct: 670 EAIMAVPGIGPALAAAIVAHLSE 692 >gi|291276652|ref|YP_003516424.1| Holliday junction DNA helicase [Helicobacter mustelae 12198] gi|290963846|emb|CBG39682.1| holliday junction DNA helicase [Helicobacter mustelae 12198] Length = 184 Score = 40.2 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 17/93 (18%) Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV- 653 + +LI++ VG +A AI+ + + +E + + V ++ K +V Sbjct: 71 FDTLIKINGVGPKVALAILSTFSAQEFMAVIER----KDIAALQKVPGVGTKSAGKIMVE 126 Query: 654 FTGT---L-------QKIQRHKAQEYVTQLGAV 676 +G L + +A+ + LG Sbjct: 127 LSGAYVELLPKKDHTEHF--QQAEMALENLGYK 157 >gi|81428681|ref|YP_395681.1| putative type II secretion/competence system, protein ComEA-like [Lactobacillus sakei subsp. sakei 23K] gi|78610323|emb|CAI55372.1| Putative bacterial type II secretion/competence system, protein ComEA-like [Lactobacillus sakei subsp. sakei 23K] Length = 234 Score = 40.2 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 19/59 (32%) Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 I N D L + +G A+ I+ + +E L K E+ S Sbjct: 173 IDLNQADSTQLQTLNGIGPKKAEQIIAYRDEQGKFKQIEDLQKVGGIGPKTFEQLQSQI 231 >gi|300781129|ref|ZP_07090983.1| excision endonuclease subunit UvrC [Corynebacterium genitalium ATCC 33030] gi|300532836|gb|EFK53897.1| excision endonuclease subunit UvrC [Corynebacterium genitalium ATCC 33030] Length = 693 Score = 40.2 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 13/113 (11%) Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 P D L + + + + Y + + + GI +G Sbjct: 589 PDDDEPLILPRNSEGMYLLQQIRDEAHRFAITYHRQQRSKRMRASA---LDGIPGLGPAR 645 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 L K++ S + + VP +G +A+ + + + Sbjct: 646 RSDLVKHFGSVKKLKAA----------SAEEIEEVPGIGPKLAETVWQHLRKD 688 >gi|159043197|ref|YP_001531991.1| excinuclease ABC subunit C [Dinoroseobacter shibae DFL 12] gi|157910957|gb|ABV92390.1| excinuclease ABC [Dinoroseobacter shibae DFL 12] Length = 631 Score = 40.2 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 10/85 (11%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ + + VGA+ R+L ++ S A + + Sbjct: 556 HRFAIGTHRAKRSKSVSRTPLDDVPGVGAKRKRALLAHFGS----------AKAVSRANL 605 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPR 620 L V V +AQ I +F+ + + Sbjct: 606 SDLKAVEGVSATMAQTIYDFFHDQK 630 >gi|14591755|ref|NP_143722.1| Hef nuclease [Pyrococcus horikoshii OT3] Length = 748 Score = 40.2 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 10/56 (17%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + +V +AR L +++ S + L++V +G+ IA+ I Sbjct: 692 SLPNVSTTLARRLLRHFGSVEKVFTA----------SVPELMKVEGIGEKIAREIR 737 >gi|282599770|ref|ZP_05971815.2| conserved hypothetical protein [Providencia rustigianii DSM 4541] gi|282567766|gb|EFB73301.1| conserved hypothetical protein [Providencia rustigianii DSM 4541] Length = 168 Score = 40.2 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEE 712 FTG L+ + K E G VV ++ ++ G N K++KA+++G+ I+NE Sbjct: 97 FTGFLKADK-EKLTELAADAGMVVRKSVTVHLKLLCYGYNASQMKMDKAREMGIIILNEN 155 Query: 713 QFLFLL 718 QF L Sbjct: 156 QFREFL 161 >gi|311896823|dbj|BAJ29231.1| putative DNA integrity scanning protein [Kitasatospora setae KM-6054] Length = 368 Score = 39.8 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 9/69 (13%), Positives = 19/69 (27%), Gaps = 10/69 (14%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 + + + L ++ Q L V VG+ A+++ E Sbjct: 308 VPRLPNTVIERLVDHFGGLQKLLAA----------SIDDLQTVEGVGETRARSVREGLSR 357 Query: 619 PRNICAVEA 627 +E Sbjct: 358 LAESSILER 366 >gi|192361497|ref|YP_001982263.1| excinuclease ABC subunit C [Cellvibrio japonicus Ueda107] gi|190687662|gb|ACE85340.1| excinuclease ABC, C subunit [Cellvibrio japonicus Ueda107] Length = 612 Score = 39.8 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 10/94 (10%) Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 +++ + +K+R R I VGA R L +++ Q + Sbjct: 529 HLIQHIRDESHRFAITGHKQRRDKKRRTSSLEDIPGVGATRRRELLRHFGGLQEVQKA-- 586 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 + L +VP + +A+ I F+ N Sbjct: 587 --------SVVELAKVPGISHKLAEEIYSFFHND 612 >gi|294102363|ref|YP_003554221.1| competence protein ComEA helix-hairpin-helix repeat protein [Aminobacterium colombiense DSM 12261] gi|293617343|gb|ADE57497.1| competence protein ComEA helix-hairpin-helix repeat protein [Aminobacterium colombiense DSM 12261] Length = 210 Score = 39.8 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 25/66 (37%) Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635 S QN + N L +P VG A +IV + ++ +E LL+ Sbjct: 136 SRQNSDSSAMKKVNINRASEEELQALPGVGPSTAGSIVRYRESQGLFNGIEDLLRVRGIG 195 Query: 636 IGRHEK 641 + EK Sbjct: 196 PAKFEK 201 >gi|203283953|ref|YP_002221693.1| Holliday junction DNA helicase [Borrelia duttonii Ly] gi|226698725|sp|B5RLN1|RUVA_BORDL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|201083396|gb|ACH92987.1| Holliday junction DNA helicase [Borrelia duttonii Ly] Length = 196 Score = 39.8 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 27/83 (32%), Gaps = 4/83 (4%) Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629 + Y+ + + + + + LI V +G A I+ + A+ Sbjct: 46 ILTYFHFRDDDVKLFGFLNISEREVFEDLIGVDGIGPKAALKILSGIKYDAFRLAIAK-- 103 Query: 630 KEVSPSIGRHEKNVSSEIENKKL 652 ++ K + ++I K Sbjct: 104 --EDINLISKVKGIGNKIAGKIF 124 >gi|187933408|ref|YP_001884449.1| DNA integrity scanning protein DisA [Clostridium botulinum B str. Eklund 17B] gi|226729438|sp|B2TIF1|DISA_CLOBB RecName: Full=DNA integrity scanning protein disA gi|187721561|gb|ACD22782.1| DNA integrity scanning protein DisA [Clostridium botulinum B str. Eklund 17B] Length = 354 Score = 39.8 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 38/129 (29%), Gaps = 4/129 (3%) Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 ++ L R N + ++ L SL + Sbjct: 224 LVKHIERDGILLIRDYCKDEDGHNEVYEQIQKLSATELLDLDAIARVLGHAGESLVDTLI 283 Query: 563 GAEIARSLAK--YYLS--YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 A+ R L K S +N +E + + D L V +G+ A+AI + + Sbjct: 284 SAKGYRILGKVPRIPSTVIENLIKEFKELNSVIEADIDELDIVEGIGEARAKAIKDGLKR 343 Query: 619 PRNICAVEA 627 R + Sbjct: 344 IREQILLNK 352 >gi|297582420|ref|YP_003698200.1| DNA integrity scanning, DisA, linker region [Bacillus selenitireducens MLS10] gi|297140877|gb|ADH97634.1| DNA integrity scanning, DisA, linker region [Bacillus selenitireducens MLS10] Length = 360 Score = 39.8 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 9/69 (13%), Positives = 23/69 (33%), Gaps = 10/69 (14%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I + ++ R+L + + + + D L V +G+ A I + Sbjct: 300 IPRIPPKVIRNLVRQFGTLSEMIRA----------DIQELDEVEGIGEARANKIQDGLSR 349 Query: 619 PRNICAVEA 627 + ++ Sbjct: 350 IQEQLIIDR 358 >gi|7510359|pir||T27283 hypothetical protein Y64G10A.f - Caenorhabditis elegans Length = 1620 Score = 39.8 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 32/358 (8%), Positives = 67/358 (18%), Gaps = 17/358 (4%) Query: 157 GHSGEDVSACIRA----IPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 G G D + I P + + + F + Sbjct: 960 GRFGIDCMQLCKCQNGAICDTSNGSCECAPGWSGKKCDKACAPGTFGKDCSKKCDCADGM 1019 Query: 213 YANPRNAASGILRRLNPTDITRYLNFFVHGLGK----TSEIFAKGQYEMLQKMRCLGFPV 268 + +P + + + G G + + A G+ Sbjct: 1020 HCDPSDGECICPPGKKGHKCDETCDSGLFGAGCKGICSCQNGATCDSVTGSCECRPGWRG 1079 Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 R + + V + D + + + P S Sbjct: 1080 KKCDRPCPDGRFGEGCNAICDCTTTNDTSMYNPFVARCDHVTGECRCPAGWTGPDCQTSC 1139 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH----NEDYIKGLDA 384 + G + P G + + L Sbjct: 1140 -PLGRHGEGCRHSCQCSNGASCDRVTGFCDCPSGFMGKNCESECPEGLWGSNCMKHCLCM 1198 Query: 385 SGKVMRGGRD----IRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 G I + G+ + + C S Sbjct: 1199 HGGECNKENGDCECIDGWTGPSLCPFGQFGRNCAQRCNCKNGASCDRKTGRCECLPGWSG 1258 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 + + +G A T A H + + + + L +F Sbjct: 1259 EHCEKSCVSGHYGAKCEETCECENGALCDPISGHCSCQPGWRGKKCNRPCLKGYFGRH 1316 >gi|159905661|ref|YP_001549323.1| Hef nuclease [Methanococcus maripaludis C6] gi|159887154|gb|ABX02091.1| ERCC4 domain protein [Methanococcus maripaludis C6] Length = 751 Score = 39.8 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 10/57 (17%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 G+ VG +A +L + S +N L V VG I A+ I E Sbjct: 697 GLPDVGPVMAENLLDNFNSVENIFTASE----------EELKSVDGVGPITAKKIKE 743 >gi|206901500|ref|YP_002250825.1| ComEA protein [Dictyoglomus thermophilum H-6-12] gi|206740603|gb|ACI19661.1| ComEA protein [Dictyoglomus thermophilum H-6-12] Length = 184 Score = 39.8 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 21/58 (36%) Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 N L +P +G +AQ I+E+ + + E LL + EK Sbjct: 125 NINTASKEELESLPGIGPTLAQRIIEYREENGVFTSAEDLLNVKGIGEKKLEKIKDQI 182 >gi|171920237|ref|ZP_02690314.2| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902634|gb|EDT48923.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 1442 Score = 39.8 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 5/95 (5%) Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----SYQNFAQEINNIIAHNNDDW 595 + +K R+ + L ++ + + LA+ + S + I NN Sbjct: 1319 EQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQNNAII 1378 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 I + +G+ +A +I+E +N + +E L Sbjct: 1379 PPFIAIQGLGETVANSIIEA-RNQKVFSTIEDLKN 1412 >gi|145322928|ref|NP_001030806.2| unknown protein [Arabidopsis thaliana] gi|49823530|gb|AAT68748.1| hypothetical protein At3g43930 [Arabidopsis thaliana] gi|332644325|gb|AEE77846.1| BRCT domain-containing DNA repair protein [Arabidopsis thaliana] Length = 444 Score = 39.8 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 1/37 (2%) Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + TG L K R + +E +LG Sbjct: 49 PPVRSDGPFSGLIICVTG-LSKEARKQVKEATERLGG 84 >gi|115446483|ref|NP_001047021.1| Os02g0530600 [Oryza sativa Japonica Group] gi|118573102|sp|Q0E0Q3|PARP3_ORYSJ RecName: Full=Poly [ADP-ribose] polymerase 3; Short=PARP-3; AltName: Full=NAD(+) ADP-ribosyltransferase 3; Short=ADPRT-3; AltName: Full=Poly[ADP-ribose] synthase 3 gi|113536552|dbj|BAF08935.1| Os02g0530600 [Oryza sativa Japonica Group] gi|215734946|dbj|BAG95668.1| unnamed protein product [Oryza sativa Japonica Group] gi|218190884|gb|EEC73311.1| hypothetical protein OsI_07496 [Oryza sativa Indica Group] gi|222622987|gb|EEE57119.1| hypothetical protein OsJ_06997 [Oryza sativa Japonica Group] Length = 831 Score = 39.8 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 11/94 (11%), Positives = 32/94 (34%), Gaps = 15/94 (15%) Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH--KAQEYVTQLGAVVSAILSRKT 685 L ++ + + + +G ++ R +E + + G V+ + Sbjct: 184 LKQQEGNKYPKRNLDDEGIFSGMMIALSG---RMSRSHGYFKEQIMKHGGKVNNSVIG-V 239 Query: 686 DIIIV-------GDNPGSKLEKAQQLGVKIMNEE 712 ++ G + G +A + G +++E Sbjct: 240 TCVVASPAERHQGGSGG--FAEALERGTPVVSEN 271 >gi|295839538|ref|ZP_06826471.1| excinuclease ABC subunit C [Streptomyces sp. SPB74] gi|197696882|gb|EDY43815.1| excinuclease ABC subunit C [Streptomyces sp. SPB74] Length = 818 Score = 39.8 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 10/82 (12%), Positives = 25/82 (30%), Gaps = 10/82 (12%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 + + + R + +G ++L K++ S + Sbjct: 538 HRFAITYQRSKRAKRFRAGPLDEVPGLGQSRKQALLKHFGSVKKLRAAT----------I 587 Query: 596 LSLIRVPLVGDIIAQAIVEFYQ 617 + VP +G A+ I+ + Sbjct: 588 EQICEVPGIGRKTAETILATFA 609 >gi|49823528|gb|AAT68747.1| hypothetical protein At3g43930 [Arabidopsis thaliana] Length = 363 Score = 39.8 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 1/37 (2%) Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + TG L K R + +E +LG Sbjct: 49 PPVRSDGPFSGLIICVTG-LSKEARKQVKEATERLGG 84 >gi|254520207|ref|ZP_05132263.1| helix-hairpin-helix repeat-containing competence protein ComEA [Clostridium sp. 7_2_43FAA] gi|226913956|gb|EEH99157.1| helix-hairpin-helix repeat-containing competence protein ComEA [Clostridium sp. 7_2_43FAA] Length = 224 Score = 39.8 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 24/64 (37%) Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642 + II N L ++ VG++ A++I+ + + +++ + EK Sbjct: 159 AEDGIININTASLEELQKINGVGEVKAKSIINYREKNGGFKSIDEMKNIEGIGDKTFEKM 218 Query: 643 VSSE 646 Sbjct: 219 KDQI 222 >gi|157413345|ref|YP_001484211.1| excinuclease ABC subunit C [Prochlorococcus marinus str. MIT 9215] gi|157387920|gb|ABV50625.1| Excinuclease ABC subunit C (UvrC) [Prochlorococcus marinus str. MIT 9215] Length = 644 Score = 39.8 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 29/103 (28%), Gaps = 10/103 (9%) Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576 + K +L S ++ + I +G+ + L +Y+ S Sbjct: 552 KTDMNQKGVMLLRRLRDEAHRFALSFHRNKRSKRMNRSQLTQIPGLGSSRIKDLLEYFKS 611 Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 L++V +G A I F+ N Sbjct: 612 VDAIRIASK----------DELMKVKGLGANTANDIYNFFNND 644 >gi|302876559|ref|YP_003845192.1| DNA integrity scanning, DisA, linker region [Clostridium cellulovorans 743B] gi|307687231|ref|ZP_07629677.1| DNA integrity scanning protein DisA [Clostridium cellulovorans 743B] gi|302579416|gb|ADL53428.1| DNA integrity scanning, DisA, linker region [Clostridium cellulovorans 743B] Length = 357 Score = 39.8 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 17/50 (34%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 N +N L +V +G+ A+AI + R ++ Sbjct: 305 INNLVNSFDNFQEILKASIEDLDKVEGIGEARAKAIKNGLRRLREQSMLD 354 >gi|295670675|ref|XP_002795885.1| subunit of DNA polymerase II [Paracoccidioides brasiliensis Pb01] gi|226284970|gb|EEH40536.1| subunit of DNA polymerase II [Paracoccidioides brasiliensis Pb01] Length = 822 Score = 39.8 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 3/95 (3%) Query: 628 LLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKT 685 + P++ E+ + TG + + R+ Q +T+ G L++ Sbjct: 61 WMLGGDPNLEELEEQYRYPTFAGLSICLTG-FEDMNTRNHLQRTITENGGEFRRDLTKSV 119 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +I G K + A + +++ + L++ Sbjct: 120 THLIARSGCGQKYKYATLWKITVVSLKWLQDSLER 154 >gi|297818848|ref|XP_002877307.1| hypothetical protein ARALYDRAFT_484825 [Arabidopsis lyrata subsp. lyrata] gi|297323145|gb|EFH53566.1| hypothetical protein ARALYDRAFT_484825 [Arabidopsis lyrata subsp. lyrata] Length = 494 Score = 39.8 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 1/38 (2%) Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + + TG L K R + +E +LG Sbjct: 47 QPPVRSDGPFSGLIICVTG-LSKEARKQVKEATERLGG 83 >gi|189242004|ref|XP_001807057.1| PREDICTED: hypothetical protein, partial [Tribolium castaneum] Length = 765 Score = 39.8 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 28/384 (7%), Positives = 64/384 (16%), Gaps = 23/384 (5%) Query: 158 HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN----DEMIAVGRKPY 213 SG+D + +F + ++ Y Sbjct: 37 DSGDDWYRINFDFGSFNFWKWDGFDSRYNWY------WINFNWNWYWFNSWLNWQRKRFY 90 Query: 214 ANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273 + + N Y + +G+ F ++ + N R Sbjct: 91 SWFDRSWKRFYTGYNWKWYWFYARYNWNGVNFDFWSFNFRKWYWFYSGYNWYWVNLNLWR 150 Query: 274 QANTFHGIV--SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 Y + Y + + S + + F Sbjct: 151 FDFWKGYWFNSWYDWNWYRNWDRFHSRYNWKWYGFNTGYNWNWVNFNFWSFNFRKWYWFY 210 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 + + + + + I N N + Sbjct: 211 SRYNWYWVNFNLWRFDFWKRYWFNSWYDWNWI----NFNFWSFNFRKWYWFYSGYNWYWV 266 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 ++ D + +R + + F V Sbjct: 267 NLNLWRFD-FWKRYWFNSWYDWNWYRNWDRFHSRYNWKWYGFNTRYNWNWVNFDFWSFNF 325 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 +G F R D+ + F R + Sbjct: 326 RKWYWFYSGYNWYWVNLNLWRFDFWKR------YWFNSWYDWNWYRNWDRFHSRYNWKWY 379 Query: 512 TLQRRQQTSTTKIENILGFGDVSV 535 + Sbjct: 380 GFNTGYNWNWVNFNFWSFNFRKWY 403 >gi|119483248|ref|ZP_01618662.1| Excinuclease ABC, C subunit [Lyngbya sp. PCC 8106] gi|119458015|gb|EAW39137.1| Excinuclease ABC, C subunit [Lyngbya sp. PCC 8106] Length = 649 Score = 39.8 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 12/92 (13%), Positives = 27/92 (29%), Gaps = 10/92 (10%) Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 +L S ++++ + I +G + L ++ S Sbjct: 557 QLLRRLRDEAHRFAVSFHRQKRSQRLKRSRLDEIPGLGYRRQKQLLAHFRSIDYLRIATP 616 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 + VP +G +AQ I ++ Sbjct: 617 ----------EQITEVPGIGFKLAQHIYNYFH 638 >gi|170103374|ref|XP_001882902.1| predicted protein [Laccaria bicolor S238N-H82] gi|164642273|gb|EDR06530.1| predicted protein [Laccaria bicolor S238N-H82] Length = 1624 Score = 39.8 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Query: 657 TLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 T+ R ++ +T +GA + ++ K ++I G+K KA + ++N Sbjct: 382 TVTNYTGEAREYLKKLITAMGATFTPSMTGKNTVLIAAFLTGTKATKALSWSIPVVN 438 >gi|300811641|ref|ZP_07092117.1| tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|313124105|ref|YP_004034364.1| methylenetetrahydrofolate dehydrogenase (nadp+)/methenyltetrahydrofolate cyclohydrolase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|300497342|gb|EFK32388.1| tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|312280668|gb|ADQ61387.1| Methylenetetrahydrofolate dehydrogenase (NADP+)/methenyltetrahydrofolate cyclohydrolase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 283 Score = 39.8 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 20/77 (25%) Query: 671 TQLGAVVSA----ILSRKTDIII-VGDNPGSKL------EKAQQLGVKIM--------NE 711 +LG+ V++ +S K +I +GD+P SK+ KA++LG+K + +E Sbjct: 16 EKLGSEVASLKEHGVSPKL-CVINIGDDPASKVYVASKKRKAEKLGIKQVVYQLPADESE 74 Query: 712 EQFLFLLQQYNTTLRIH 728 E L L+ N + Sbjct: 75 EDVLKLIDSLNADPEVS 91 >gi|154484305|ref|ZP_02026753.1| hypothetical protein EUBVEN_02018 [Eubacterium ventriosum ATCC 27560] gi|149734782|gb|EDM50699.1| hypothetical protein EUBVEN_02018 [Eubacterium ventriosum ATCC 27560] Length = 633 Score = 39.8 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 14/131 (10%), Positives = 33/131 (25%), Gaps = 15/131 (11%) Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF-----GDVSVTNLYDSINKRR 546 D ++ +N GF ++ Sbjct: 513 DSLNLHIPVCGMVKDDNHRTRGLYYNNEEIPIAKNSEGFRLITRMQDETHRFAIEYHRSL 572 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + I VG ++L + + S + + L +V + + Sbjct: 573 RNKKQVHSILDDISGVGPARRKALMREFKSIEGIREAT----------VEQLSQVDTISE 622 Query: 607 IIAQAIVEFYQ 617 +A+ I +F+ Sbjct: 623 KVAKDIYKFFH 633 >gi|111225864|ref|YP_716658.1| DNA integrity scanning protein DisA [Frankia alni ACN14a] gi|123337921|sp|Q0RBN2|DISA_FRAAA RecName: Full=DNA integrity scanning protein disA gi|111153396|emb|CAJ65152.1| nucleic-acid-binding protein protein, containing HHH domain [Frankia alni ACN14a] Length = 359 Score = 39.8 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 10/82 (12%) Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R IS + + + + L ++ + Q L V VG Sbjct: 286 RQISPRGYRMLAKVPRLPRMVVDRLVDHFGTLQKLLAA----------GVDDLQAVDGVG 335 Query: 606 DIIAQAIVEFYQNPRNICAVEA 627 + A+A+ E +E Sbjct: 336 ETRARAVREGLSRLAESSILER 357 >gi|86742934|ref|YP_483334.1| DNA integrity scanning protein DisA [Frankia sp. CcI3] gi|119365932|sp|Q2J537|DISA_FRASC RecName: Full=DNA integrity scanning protein disA gi|86569796|gb|ABD13605.1| protein of unknown function DUF147 [Frankia sp. CcI3] Length = 359 Score = 39.8 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 10/82 (12%) Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R IS + + + + L ++ + Q L V VG Sbjct: 286 RQISPRGYRMLAKVPRLPRMVVDRLVDHFGTLQKLLAA----------GVDDLQAVDGVG 335 Query: 606 DIIAQAIVEFYQNPRNICAVEA 627 + A+A+ E +E Sbjct: 336 ETRARAVREGLSRLAESSILER 357 >gi|18375967|emb|CAD21266.1| related to NAD+ ADP-ribosyltransferase [Neurospora crassa] Length = 661 Score = 39.8 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 42/97 (43%), Gaps = 21/97 (21%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA-----ILS------RKTDIIIVGDNP 694 +E+ ++VF+GT + + ++ LGA + ++ + TD Sbjct: 17 PLEDCRIVFSGTFVG-GQDQHKKTAESLGANTTGTTIVQSVTHVIYSDKSTD------KI 69 Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731 +K+++A + + +++ + LL+ T R + D Sbjct: 70 SAKVKQAHGMSIPVVSIDW---LLKTKETNTRHPEKD 103 >gi|270009278|gb|EFA05726.1| hypothetical protein TcasGA2_TC015410 [Tribolium castaneum] Length = 1310 Score = 39.8 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Query: 657 TLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 TL R++ + + GA ++ S+ ++I G+K A++ G+ ++N Sbjct: 952 TLSGFTGCERNRVKHMINYTGAKFTSYFSKHNTLLIAAKGEGAKYNHAKKWGIPVVN 1008 >gi|189238097|ref|XP_001813810.1| PREDICTED: similar to conserved hypothetical protein [Tribolium castaneum] Length = 1341 Score = 39.8 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Query: 657 TLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 TL R++ + + GA ++ S+ ++I G+K A++ G+ ++N Sbjct: 967 TLSGFTGCERNRVKHMINYTGAKFTSYFSKHNTLLIAAKGEGAKYNHAKKWGIPVVN 1023 >gi|328710855|ref|XP_001946764.2| PREDICTED: DNA topoisomerase 2-binding protein 1-B-like [Acyrthosiphon pisum] Length = 1285 Score = 39.8 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 7/66 (10%) Query: 651 KLVFTGTLQKIQRHK---AQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGV 706 +V ++ + + +E V +G + S L T ++VG GS K KA + G+ Sbjct: 117 NIVL--SISNLSPKEKERVKEKVEYMGGIFSHNLRDSTTHLMVG-KAGSQKHIKAIENGI 173 Query: 707 KIMNEE 712 IM E+ Sbjct: 174 NIMTEK 179 >gi|310815055|ref|YP_003963019.1| excinuclease ABC, C subunit [Ketogulonicigenium vulgare Y25] gi|308753790|gb|ADO41719.1| excinuclease ABC, C subunit [Ketogulonicigenium vulgare Y25] Length = 618 Score = 39.8 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 10/87 (11%) Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 V ++ + + VG R+L +++ S Sbjct: 539 MRDEVHRFAIGTHRAKRSKAFTTNALDELPGVGPARKRALLQHFGS----------AKDV 588 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 +N L VP + D +A+ I ++ Sbjct: 589 SNAHLEDLKAVPGISDAMAEKIYNYFH 615 >gi|222100489|ref|YP_002535057.1| ComEA protein-related protein [Thermotoga neapolitana DSM 4359] gi|221572879|gb|ACM23691.1| ComEA protein-related protein [Thermotoga neapolitana DSM 4359] Length = 181 Score = 39.8 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 22/57 (38%) Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 I N+ L+ +P +G + AQ IVE+ + VE L EK Sbjct: 47 IDLNSASVEDLMSIPGIGPVKAQRIVEYRRIRGKFSTVEELTNVSGIGEKTLEKISK 103 >gi|163750735|ref|ZP_02157971.1| atp-dependent rna helicase, eif-4a family protein [Shewanella benthica KT99] gi|161329579|gb|EDQ00571.1| atp-dependent rna helicase, eif-4a family protein [Shewanella benthica KT99] Length = 212 Score = 39.8 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 17/177 (9%) Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 + KT + C G L +L H A IEG + + E Sbjct: 45 NWLIERKTLPDLVISLCDGRLFSQVARLSACDH---NTALLIEGSSRDIASYDITREALI 101 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR----RNISLERFIFSL 557 ++ + F + + S + IL F + + + + + Sbjct: 102 GALCSISIKFNMPILRSLSQAESAKILYFVAKQLHSRETELKLNGRKPKRKKNRQLFILQ 161 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + VG ++A+ L ++ + + L +V +G AQ I + Sbjct: 162 SLPQVGPKLAKRLLSHFDNIEAIFTAPAA----------ELRKVEGIGQEKAQKIRD 208 >gi|145552529|ref|XP_001461940.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124429777|emb|CAK94567.1| unnamed protein product [Paramecium tetraurelia] Length = 2023 Score = 39.8 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 28/323 (8%), Positives = 64/323 (19%), Gaps = 41/323 (12%) Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 G G SG + ++ P + + + K + + Sbjct: 912 GYGQSGLN--GNYCSMCQYPCLECSINVNTCTKCIDSSLFKLE-NNQCLCQEGYYKDENQ 968 Query: 215 NPRNA--ASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 R A + + + + F Y P N+ Sbjct: 969 CLRCAPQCKSCEQFQDYCLACKDVTFIQIN------NQCFCDYGYFLNSAFQCKPCNSPC 1022 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 + + + + V + + + Sbjct: 1023 TTCQYNNNFCTSCIK-----EYQYLINNTCVCQDGYYMQNYEC----------------S 1061 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 T I + + T + D +++ Sbjct: 1062 LCYYTCTKCFSFNICNACVDGYYLNNDICTQCDTQC--LTCIDHDECLACSDGYYMVQTH 1119 Query: 393 RDIRVGDRVLV--KRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450 + + + + + D Q C C + L+ Sbjct: 1120 K-----CTSCISNCKECDNSYTCITCFDGYFLYDEQCVKCDDNCHTCVDEYQKCLSCNDN 1174 Query: 451 KLVAAHRCTGGLACSAQQLERLK 473 L+ ++C Q E LK Sbjct: 1175 FLLIDNKCICQEGYYYQNYECLK 1197 >gi|46111691|ref|XP_382903.1| hypothetical protein FG02727.1 [Gibberella zeae PH-1] Length = 866 Score = 39.8 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 17/78 (21%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV----- 706 + TG + R + + +T G V + L++K +IV G K A+ + Sbjct: 152 ICLTGFGDQ--RGEIAKKITSNGGVFTGDLTKKCTHLIVHKPEGRKYAAARSWNIYPVTL 209 Query: 707 ----------KIMNEEQF 714 I++E +F Sbjct: 210 AWLDQSIARGMILDESKF 227 >gi|327438614|dbj|BAK14979.1| dehydrogenase with different specificities [Solibacillus silvestris StLB046] Length = 240 Score = 39.8 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 + ENK +V TGT I R +A ++T+ GA V Sbjct: 2 GNRFENKVVVITGTASGIGRAQAAAFLTE-GATVVG 36 >gi|269794026|ref|YP_003313481.1| nucleic-acid-binding protein [Sanguibacter keddieii DSM 10542] gi|269096211|gb|ACZ20647.1| predicted nucleic-acid-binding protein (contains the HHH domain) [Sanguibacter keddieii DSM 10542] Length = 361 Score = 39.8 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 10/69 (14%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 + + + I L ++ Q L+ V VG+ A+++ E Sbjct: 301 VPRLPSTIVARLVSHFGGLQKLLAAT----------VEDLMAVDGVGEQRARSVREGLSR 350 Query: 619 PRNICAVEA 627 +E Sbjct: 351 LAESSILER 359 >gi|124027340|ref|YP_001012660.1| ERCC4-type nuclease [Hyperthermus butylicus DSM 5456] gi|123978034|gb|ABM80315.1| ERCC4-type nuclease [Hyperthermus butylicus DSM 5456] Length = 243 Score = 39.8 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 10/80 (12%) Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 +++ +SL I + VG +AR L + + + + A L+ V Sbjct: 165 RVEKKPMSLAERILYVAEGLVGPTLARRLLERFGTLRRIANA----------SVQELMSV 214 Query: 602 PLVGDIIAQAIVEFYQNPRN 621 +G+ A+ I + N Sbjct: 215 RGIGEKRAREIYLIFNTEWN 234 >gi|302338232|ref|YP_003803438.1| HhH-GPD family protein [Spirochaeta smaragdinae DSM 11293] gi|301635417|gb|ADK80844.1| HhH-GPD family protein [Spirochaeta smaragdinae DSM 11293] Length = 240 Score = 39.8 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 5/74 (6%) Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 + + LE I S G A ++LA+++ + A + L Sbjct: 84 MQRLLALSDERLEALIRSSGYYRQKARKLKTLARFF-----LENGYGEVSAASTPSREEL 138 Query: 599 IRVPLVGDIIAQAI 612 + + +G+ A +I Sbjct: 139 LSLWGIGEETADSI 152 >gi|291613471|ref|YP_003523628.1| hypothetical protein Slit_1003 [Sideroxydans lithotrophicus ES-1] gi|291583583|gb|ADE11241.1| conserved hypothetical protein [Sideroxydans lithotrophicus ES-1] Length = 143 Score = 39.8 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 25/74 (33%) Query: 5 QLIPIEALSIEQARKELSSLEQEISY-HDDCY----YQYSKPIILDSEYDALKRRCDAIA 59 + +P+EAL+ ++ + + +L+ + HD Y Y Sbjct: 45 EELPVEALNGDELARRIDALDALLRRDHDYSYCGIVYADDA------------------- 85 Query: 60 HAFPDLARSEDPNG 73 P L + DPN Sbjct: 86 -EHPTLIKVYDPNN 98 >gi|302910096|ref|XP_003050216.1| hypothetical protein NECHADRAFT_49036 [Nectria haematococca mpVI 77-13-4] gi|256731153|gb|EEU44503.1| hypothetical protein NECHADRAFT_49036 [Nectria haematococca mpVI 77-13-4] Length = 728 Score = 39.8 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 8/66 (12%) Query: 647 IENKKLVFTGTLQKI--QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---NPG-SKLE- 699 ++ + +G I + + + G V+ +++ T ++ + N G +K+ Sbjct: 17 LDGCAIALSGKFDDIDHNHSSLETVIRKHGGTVTRSVTKATTHVVCTEYDFNAGTTKITA 76 Query: 700 -KAQQL 704 KA+ L Sbjct: 77 AKAKDL 82 >gi|304316608|ref|YP_003851753.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778110|gb|ADL68669.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 205 Score = 39.8 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRH 639 ++ + I N L +P +G++ AQ I++F + N +E ++ + P + Sbjct: 138 EKADGKININKATKEELDTLPGIGEVTAQRIIDFREQHGNFQKIEDIMNVSRIGPKLFEQ 197 Query: 640 EKNV 643 K+ Sbjct: 198 IKDK 201 >gi|330959841|gb|EGH60101.1| putative DNA-binding protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 233 Score = 39.8 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 10/56 (17%) Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 G AR L ++ S + NN L V +G AQAI E Sbjct: 162 CGPVAARKLLNHFRS----------VFRVNNASIDELCAVKGIGPKKAQAIFEGIH 207 >gi|167755868|ref|ZP_02427995.1| hypothetical protein CLORAM_01385 [Clostridium ramosum DSM 1402] gi|237734836|ref|ZP_04565317.1| predicted protein [Mollicutes bacterium D7] gi|167704807|gb|EDS19386.1| hypothetical protein CLORAM_01385 [Clostridium ramosum DSM 1402] gi|229382164|gb|EEO32255.1| predicted protein [Coprobacillus sp. D7] Length = 166 Score = 39.8 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 N+I+ N+ L+ + +G A I+++ +N +E + + Sbjct: 104 KNLISLNHASKEQLMTIKGIGPKTADKIIDY-RNEHPFATIEEIKE 148 >gi|146344019|ref|YP_001201875.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] gi|146187831|emb|CAM96160.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] Length = 233 Score = 39.8 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 10/56 (17%) Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 G AR L ++ S + NN L V +G AQAI E Sbjct: 162 CGPVAARKLLNHFRS----------VFRVNNASIDELCAVKGIGPKKAQAIFEGIH 207 >gi|119928872|ref|XP_001251336.1| PREDICTED: ADAM metallopeptidase domain 21 [Bos taurus] gi|297477624|ref|XP_002689507.1| PREDICTED: ADAM metallopeptidase domain 21 preproprotein-like [Bos taurus] gi|296484966|gb|DAA27081.1| ADAM metallopeptidase domain 21 preproprotein-like [Bos taurus] Length = 726 Score = 39.8 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 43/399 (10%), Positives = 82/399 (20%), Gaps = 29/399 (7%) Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEV------RGEVYISKNDFLALNDEMIAVGRKP 212 ++ + + I+ R + + + Sbjct: 339 VSHEIGHNLGMRHDDKTCECGSRKCIMFPSKTVATRFSNCSYASYWNVVGKVRCMHISPN 398 Query: 213 YAN-PRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML----QKMRCLGFP 267 N R G + + C P Sbjct: 399 PENIFRQTRCGNSVLEEGEECDCGSTYTCAKDPCCQSDCTLRVGATCAFGLCCENCTFMP 458 Query: 268 VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327 + R+ + + N Y DG + +K+ +R I Sbjct: 459 SGSMCRKEENECDLPEWCNGTSYQCPEDVYMQDGTSCTGGGYCYEKRCNDRNEQ-CRKIF 517 Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVAR-LEPVNIGGALITNATLHNEDYIKGLDASG 386 K A+ +++++ R G A I L N I L Sbjct: 518 GKEAKNANENCYKEVNMRGDRFGNCGLTASSYIQCGIPDILCGRVQCENVTEIPLLRDHS 577 Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446 V + V G IP + ++ A C S Sbjct: 578 TVHWTRIN-GVSCWGTDYHLGMTIPDIGEVKDGTECG-ANHICIERKCTFMPSF------ 629 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506 C+ +H +N ++ S P + Sbjct: 630 --------ESGCSPETCNMNGVCNNREHCHCNSEWNPPHCQEKGAGGSVDSGPPPGRDDV 681 Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 + L R + +L + + L K Sbjct: 682 QDHHYLLLFRLIPLFFMLFCLLMWLFKKLKELIGQEEKS 720 >gi|323701816|ref|ZP_08113486.1| uroporphyrin-III C-methyltransferase [Desulfotomaculum nigrificans DSM 574] gi|323533120|gb|EGB22989.1| uroporphyrin-III C-methyltransferase [Desulfotomaculum nigrificans DSM 574] Length = 510 Score = 39.8 bits (91), Expect = 1.9, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 17/72 (23%) Query: 609 AQAIVEFYQNPRNICA--VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A+AI ++NP I V L +++ + + K++V T R +A Sbjct: 219 AKAIRAQFKNPAIIIVGEVVKLRDKLAWFEKK-------PLFGKRVVVT-----RSREQA 266 Query: 667 ---QEYVTQLGA 675 + LG Sbjct: 267 SVLSAAIEALGG 278 >gi|262276854|ref|ZP_06054647.1| excinuclease ABC subunit C [alpha proteobacterium HIMB114] gi|262223957|gb|EEY74416.1| excinuclease ABC subunit C [alpha proteobacterium HIMB114] Length = 612 Score = 39.8 bits (91), Expect = 1.9, Method: Composition-based stats. Identities = 10/87 (11%), Positives = 29/87 (33%), Gaps = 10/87 (11%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 + ++++ I +G++ ++L ++ S A Sbjct: 535 HRFAITTHRKKKTKQMFKSPLDEIDGIGSKRKKALLSHFGS----------AKAIEGASL 584 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNI 622 + + + D A+ + F+ +NI Sbjct: 585 DDIKSIDGINDSSAEKVYNFFHKKKNI 611 >gi|116753548|ref|YP_842666.1| Hef nuclease [Methanosaeta thermophila PT] gi|116664999|gb|ABK14026.1| DEAD/DEAH box helicase domain protein [Methanosaeta thermophila PT] Length = 749 Score = 39.8 bits (91), Expect = 1.9, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 10/75 (13%) Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 R + ++ + VG +AR+L +++ S + L+ Sbjct: 677 HGRKTSRTLKEQQEYLISALPGVGPSVARNLLRHFGSVERIMTASEG----------ELM 726 Query: 600 RVPLVGDIIAQAIVE 614 V VG A I E Sbjct: 727 SVDKVGPKTAARIRE 741 >gi|157964607|ref|YP_001499431.1| transposase [Rickettsia massiliae MTU5] gi|157844383|gb|ABV84884.1| Transposase and inactivated derivative [Rickettsia massiliae MTU5] Length = 316 Score = 39.8 bits (91), Expect = 1.9, Method: Composition-based stats. Identities = 25/205 (12%), Positives = 53/205 (25%), Gaps = 11/205 (5%) Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKH-----FVSRDAFNIEGLGKQQLDFFFKSED 499 K + + AH C C +L + + + I+G QL + Sbjct: 42 EWLKGKEALTAHVCMEATGCYGTKLAQYLYDNNFKVSVVNPARIKGFSMSQLSRVKTDKA 101 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559 I QQ + + R ++ I + Sbjct: 102 DCQLIAQFCQAMQPDLWQQKPIHIQKLQQWVNRLDTLITNKLQESNRLGDIDPEIAADIQ 161 Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 H+ + + + + ND L +P +G+ ++ F Sbjct: 162 FHIDF-----INERIKEVEKLIADHITQHEDLNDKRQLLASIPGIGEKTIAVVLAFLSVE 216 Query: 620 RNICAVEALLKEVSPSIGRHEKNVS 644 N + + + V + + S Sbjct: 217 -NFDSAKQVAAFVGLNPKPKQSGSS 240 >gi|328715848|ref|XP_001946726.2| PREDICTED: hypothetical protein LOC100169397 [Acyrthosiphon pisum] Length = 951 Score = 39.8 bits (91), Expect = 1.9, Method: Composition-based stats. Identities = 16/126 (12%), Positives = 40/126 (31%), Gaps = 15/126 (11%) Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 + + + ++F + + + K + S I Sbjct: 682 PMEAEAQCAFLEKIGRTEGTVTDDSDVWLFGANVVYKDFFDNQKYVKQFKSID-----IK 736 Query: 586 NIIAHNNDDWLSLI---------RVPLVGDIIAQAIVEFYQNP-RNICAVEALLKEVSPS 635 A + + ++ L + +G + A I+ F+++ +N+ E LLK + Sbjct: 737 QQFALSRNSFIQLAFLVGSDYTNGIDGIGPVSAIEILSFFESKTKNMNIEEKLLKIKEIA 796 Query: 636 IGRHEK 641 + E Sbjct: 797 NSKAEV 802 >gi|326434034|gb|EGD79604.1| poly polymerase [Salpingoeca sp. ATCC 50818] Length = 1442 Score = 39.8 bits (91), Expect = 1.9, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 12/90 (13%) Query: 633 SPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690 PS E +V + E+ G L I R + + +T G V + L RK +IV Sbjct: 38 VPSEDEDEDDVPPNMELMGMTFKLIGALA-IPRKEFEGVITAHGGAVVSSL-RKCTHVIV 95 Query: 691 G----DNPGSK----LEKAQQLGVKIMNEE 712 G + P K L++A GV +M EE Sbjct: 96 GQRELNKPQDKHPQALKEALSSGVAVMREE 125 >gi|225459661|ref|XP_002284611.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 986 Score = 39.8 bits (91), Expect = 1.9, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 + T + +R + + + Q G SA L+R +I Sbjct: 184 PFSGLTICVT-KIPADERKEMEILIKQNGGKYSADLTRNCTHLI 226 >gi|307155174|ref|YP_003890558.1| excinuclease ABC subunit C [Cyanothece sp. PCC 7822] gi|306985402|gb|ADN17283.1| excinuclease ABC, C subunit [Cyanothece sp. PCC 7822] Length = 631 Score = 39.8 bits (91), Expect = 1.9, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 16/90 (17%) Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587 + I R L+ I LG + L ++ S Q Sbjct: 556 EAHRFAVSFHRQQRITHSRRSRLDE-IPGLGFGRQ-----KQLLAHFHSVDYIRQAT--- 606 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 L+ V +G+ +AQ I ++ Sbjct: 607 -------VSQLMEVSGIGEQLAQEIYNYFH 629 >gi|309811791|ref|ZP_07705565.1| excinuclease ABC, C subunit [Dermacoccus sp. Ellin185] gi|308434212|gb|EFP58070.1| excinuclease ABC, C subunit [Dermacoccus sp. Ellin185] Length = 667 Score = 39.8 bits (91), Expect = 2.0, Method: Composition-based stats. Identities = 17/142 (11%), Positives = 43/142 (30%), Gaps = 13/142 (9%) Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ---TSTTKIENILGFGDVSVTNL 538 ++ + D F + +++ + T++ +L Sbjct: 522 QVDAAARALADVGFDDIPVVGLAKRLEEVWLVDDDYPVILPRTSEALYLLQRVRDEAHRF 581 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 + ++ R GI +G ++L ++ S + D +L Sbjct: 582 AITFHRERRSKSMTTSALDGIAGLGPAKQKALLAHFGSLKRIRAA----------DADAL 631 Query: 599 IRVPLVGDIIAQAIVEFYQNPR 620 V +G +A+ IV + + Sbjct: 632 CEVKGIGPTLAETIVRSLRQEQ 653 >gi|332706583|ref|ZP_08426644.1| hypothetical protein LYNGBM3L_22440 [Lyngbya majuscula 3L] gi|332354467|gb|EGJ33946.1| hypothetical protein LYNGBM3L_22440 [Lyngbya majuscula 3L] Length = 360 Score = 39.4 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 11/51 (21%) Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK-LEK-----AQQLGVKIMN 710 A+ + +G V++ +S K G SK K A +LG I++ Sbjct: 249 AKPILVSMGGKVASKVSSKL----AG-KAASKMAAKTGGLVATELGASIID 294 >gi|325091085|gb|EGC44395.1| BRCT domain-containing protein [Ajellomyces capsulatus H88] Length = 921 Score = 39.4 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 2/76 (2%) Query: 646 EIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 + TG + R+ Q+ +T+ GA L++ +I G K + A Sbjct: 147 TFAGLSICLTG-FDDMNHRNSLQKLITENGAEFRRDLTKSVTHLIARSGYGQKYKYATLW 205 Query: 705 GVKIMNEEQFLFLLQQ 720 + +++ + L++ Sbjct: 206 KITVVSLKWLQDSLER 221 >gi|320546389|ref|ZP_08040704.1| competence protein CelA [Streptococcus equinus ATCC 9812] gi|320448774|gb|EFW89502.1| competence protein CelA [Streptococcus equinus ATCC 9812] Length = 226 Score = 39.4 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 20/63 (31%) Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638 + I N L + +G AQ I+++ N +V+ L Sbjct: 156 ALQDADSAQINLNTASLEELQTISGIGAKRAQDIIDYRDNNGGFSSVDDLKNVSGIGEKT 215 Query: 639 HEK 641 EK Sbjct: 216 LEK 218 >gi|240275250|gb|EER38764.1| BRCT domain-containing protein [Ajellomyces capsulatus H143] Length = 891 Score = 39.4 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 2/76 (2%) Query: 646 EIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 + TG + R+ Q+ +T+ GA L++ +I G K + A Sbjct: 117 TFAGLSICLTG-FDDMNHRNSLQKLITENGAEFRRDLTKSVTHLIARSGYGQKYKYATLW 175 Query: 705 GVKIMNEEQFLFLLQQ 720 + +++ + L++ Sbjct: 176 KITVVSLKWLQDSLER 191 >gi|225561645|gb|EEH09925.1| BRCT domain-containing protein [Ajellomyces capsulatus G186AR] Length = 891 Score = 39.4 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 2/76 (2%) Query: 646 EIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 + TG + R+ Q+ +T+ GA L++ +I G K + A Sbjct: 117 TFAGLSICLTG-FDDMNHRNSLQKLITENGAEFRRDLTKSVTHLIARSGYGQKYKYATLW 175 Query: 705 GVKIMNEEQFLFLLQQ 720 + +++ + L++ Sbjct: 176 KITVVSLKWLQDSLER 191 >gi|170092201|ref|XP_001877322.1| hypothetical protein LACBIDRAFT_313586 [Laccaria bicolor S238N-H82] gi|164647181|gb|EDR11425.1| hypothetical protein LACBIDRAFT_313586 [Laccaria bicolor S238N-H82] Length = 319 Score = 39.4 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 19/129 (14%) Query: 10 EALSIEQARKELSSLEQEI---SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL- 65 ++ + R E++ L E+ ++ YY + + L R L Sbjct: 171 SRMAEDALRAEINELTTELTEAQHYQQAYYALADEVGS------LLARNQIAEEEATTLS 224 Query: 66 ---ARSEDPNGPLNKIGG--EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 A+ N P +I + L + H+I L + + L + Sbjct: 225 KFNAQILGHNNPAQRIMYIDRIRTELAEAKHNIAML----TRDQDALAAENENLQNELDM 280 Query: 121 KDDNSIFFT 129 ++ T Sbjct: 281 YKSVTVPIT 289 >gi|154283039|ref|XP_001542315.1| predicted protein [Ajellomyces capsulatus NAm1] gi|150410495|gb|EDN05883.1| predicted protein [Ajellomyces capsulatus NAm1] Length = 874 Score = 39.4 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 2/76 (2%) Query: 646 EIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 + TG + R+ Q+ +T+ GA L++ +I G K + A Sbjct: 117 TFAGLSICLTG-FDDMNHRNSLQKLITENGAEFRRDLTKSVTHLIARSGYGQKYKYATLW 175 Query: 705 GVKIMNEEQFLFLLQQ 720 + +++ + L++ Sbjct: 176 KITVVSLKWLQDSLER 191 >gi|325957866|ref|YP_004289332.1| helicase domain-containing protein [Methanobacterium sp. AL-21] gi|325329298|gb|ADZ08360.1| helicase domain protein [Methanobacterium sp. AL-21] Length = 769 Score = 39.4 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 11/86 (12%) Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSL-GIRHVGAEIARSLAKYYLSYQNFAQEINNI 587 +++ K+ + E+ IF + + ++G AR L + + + + Sbjct: 671 REQTHERSDIQIRTEKKPLTTWEQQIFIVESLPNIGPVTARKLLEEFKTVRGVINASE-- 728 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIV 613 L +V +GD IA+ I+ Sbjct: 729 --------EELKKVDGIGDKIAKNII 746 >gi|115473907|ref|NP_001060552.1| Os07g0663700 [Oryza sativa Japonica Group] gi|33354195|dbj|BAC81153.1| putative sex determination protein tasselseed 2 [Oryza sativa Japonica Group] gi|50510238|dbj|BAD31436.1| putative sex determination protein tasselseed 2 [Oryza sativa Japonica Group] gi|113612088|dbj|BAF22466.1| Os07g0663700 [Oryza sativa Japonica Group] gi|215697851|dbj|BAG92044.1| unnamed protein product [Oryza sativa Japonica Group] gi|215737704|dbj|BAG96834.1| unnamed protein product [Oryza sativa Japonica Group] gi|215741614|dbj|BAG98109.1| unnamed protein product [Oryza sativa Japonica Group] gi|218200207|gb|EEC82634.1| hypothetical protein OsI_27228 [Oryza sativa Indica Group] gi|222637628|gb|EEE67760.1| hypothetical protein OsJ_25473 [Oryza sativa Japonica Group] Length = 300 Score = 39.4 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 1/59 (1%) Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 N A S N + + K V TG I + A+E++ GA V Sbjct: 11 ETNRALGAATSPAGFVSGFSTASNSAQRLAGKVAVITGGASGIGKATAKEFIE-NGAKV 68 >gi|225875086|emb|CAX65092.1| C. elegans protein Y64G10A.7b, partially confirmed by transcript evidence [Caenorhabditis elegans] gi|225875088|emb|CAX65095.1| C. elegans protein Y64G10A.7b, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 1714 Score = 39.4 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 30/364 (8%), Positives = 69/364 (18%), Gaps = 26/364 (7%) Query: 157 GHSGEDVSACIRA----IPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 G G D + I P + + + F + Sbjct: 956 GRFGIDCMQLCKCQNGAICDTSNGSCECAPGWSGKKCDKACAPGTFGKDCSKKCDCADGM 1015 Query: 213 YANPRNAASGILRRLNPTDITRYLNFFVHGLGK----TSEIFAKGQYEMLQKMRCLGFPV 268 + +P + + + G G + + A G+ Sbjct: 1016 HCDPSDGECICPPGKKGHKCDETCDSGLFGAGCKGICSCQNGATCDSVTGSCECRPGWRG 1075 Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 R + + V + D + + + P S Sbjct: 1076 KKCDRPCPDGRFGEGCNAICDCTTTNDTSMYNPFVARCDHVTGECRCPAGWTGPDCQTSC 1135 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA--------------LITNATLH 374 + G + P G + + Sbjct: 1136 -PLGRHGEGCRHSCQCSNGASCDRVTGFCDCPSGFMGKNCESECPEGLWGSNCMKHCLCM 1194 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 + + + + G + G+ + + C Sbjct: 1195 HGGECNKENGDCECIDGWTG---PSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRCEC 1251 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 S + + +G A T A H + + + + L + Sbjct: 1252 LPGWSGEHCEKSCVSGHYGAKCEETCECENGALCDPISGHCSCQPGWRGKKCNRPCLKGY 1311 Query: 495 FKSE 498 F Sbjct: 1312 FGRH 1315 >gi|225875085|emb|CAX65091.1| C. elegans protein Y64G10A.7a, partially confirmed by transcript evidence [Caenorhabditis elegans] gi|225875087|emb|CAX65094.1| C. elegans protein Y64G10A.7a, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 1654 Score = 39.4 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 30/364 (8%), Positives = 69/364 (18%), Gaps = 26/364 (7%) Query: 157 GHSGEDVSACIRA----IPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 G G D + I P + + + F + Sbjct: 896 GRFGIDCMQLCKCQNGAICDTSNGSCECAPGWSGKKCDKACAPGTFGKDCSKKCDCADGM 955 Query: 213 YANPRNAASGILRRLNPTDITRYLNFFVHGLGK----TSEIFAKGQYEMLQKMRCLGFPV 268 + +P + + + G G + + A G+ Sbjct: 956 HCDPSDGECICPPGKKGHKCDETCDSGLFGAGCKGICSCQNGATCDSVTGSCECRPGWRG 1015 Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 R + + V + D + + + P S Sbjct: 1016 KKCDRPCPDGRFGEGCNAICDCTTTNDTSMYNPFVARCDHVTGECRCPAGWTGPDCQTSC 1075 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA--------------LITNATLH 374 + G + P G + + Sbjct: 1076 -PLGRHGEGCRHSCQCSNGASCDRVTGFCDCPSGFMGKNCESECPEGLWGSNCMKHCLCM 1134 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 + + + + G + G+ + + C Sbjct: 1135 HGGECNKENGDCECIDGWTG---PSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRCEC 1191 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 S + + +G A T A H + + + + L + Sbjct: 1192 LPGWSGEHCEKSCVSGHYGAKCEETCECENGALCDPISGHCSCQPGWRGKKCNRPCLKGY 1251 Query: 495 FKSE 498 F Sbjct: 1252 FGRH 1255 >gi|282162816|ref|YP_003355201.1| putative ATP-dependent helicase [Methanocella paludicola SANAE] gi|282155130|dbj|BAI60218.1| putative ATP-dependent helicase [Methanocella paludicola SANAE] Length = 765 Score = 39.4 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 10/56 (17%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 I VG I+++L +++ S +N L+ V VG+ A I E Sbjct: 710 ISEVGPVISKNLLRHFGSVKNIVSASK----------EELMEVDKVGEKTAAKIRE 755 >gi|302141765|emb|CBI18968.3| unnamed protein product [Vitis vinifera] Length = 952 Score = 39.4 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 + T + +R + + + Q G SA L+R +I Sbjct: 187 PFSGLTICVT-KIPADERKEMEILIKQNGGKYSADLTRNCTHLI 229 >gi|212659328|ref|NP_502737.3| hypothetical protein Y64G10A.7 [Caenorhabditis elegans] Length = 1611 Score = 39.4 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 30/364 (8%), Positives = 69/364 (18%), Gaps = 26/364 (7%) Query: 157 GHSGEDVSACIRA----IPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 G G D + I P + + + F + Sbjct: 853 GRFGIDCMQLCKCQNGAICDTSNGSCECAPGWSGKKCDKACAPGTFGKDCSKKCDCADGM 912 Query: 213 YANPRNAASGILRRLNPTDITRYLNFFVHGLGK----TSEIFAKGQYEMLQKMRCLGFPV 268 + +P + + + G G + + A G+ Sbjct: 913 HCDPSDGECICPPGKKGHKCDETCDSGLFGAGCKGICSCQNGATCDSVTGSCECRPGWRG 972 Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 R + + V + D + + + P S Sbjct: 973 KKCDRPCPDGRFGEGCNAICDCTTTNDTSMYNPFVARCDHVTGECRCPAGWTGPDCQTSC 1032 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA--------------LITNATLH 374 + G + P G + + Sbjct: 1033 -PLGRHGEGCRHSCQCSNGASCDRVTGFCDCPSGFMGKNCESECPEGLWGSNCMKHCLCM 1091 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 + + + + G + G+ + + C Sbjct: 1092 HGGECNKENGDCECIDGWTG---PSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRCEC 1148 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 S + + +G A T A H + + + + L + Sbjct: 1149 LPGWSGEHCEKSCVSGHYGAKCEETCECENGALCDPISGHCSCQPGWRGKKCNRPCLKGY 1208 Query: 495 FKSE 498 F Sbjct: 1209 FGRH 1212 >gi|299535730|ref|ZP_07049051.1| ComE operon protein 1 [Lysinibacillus fusiformis ZC1] gi|298728930|gb|EFI69484.1| ComE operon protein 1 [Lysinibacillus fusiformis ZC1] Length = 208 Score = 39.4 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 22/62 (35%) Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 I N D +L +P +G AQ+I+ + + ++ L EK Sbjct: 144 EQKININKADVATLATLPGIGPSKAQSILTYREENGQFQTIDDLKNVSGIGDKTFEKLKD 203 Query: 645 SE 646 S Sbjct: 204 SI 205 >gi|260461743|ref|ZP_05809989.1| superfamily I DNA/RNA helicase [Mesorhizobium opportunistum WSM2075] gi|259032384|gb|EEW33649.1| superfamily I DNA/RNA helicase [Mesorhizobium opportunistum WSM2075] Length = 84 Score = 39.4 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 9/62 (14%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSKLEKAQ 702 V TG R E + + G + +TD ++V G+K+ +A Sbjct: 2 FVLTGKFAIGPRKVIAEMICERGGDWKETVCGQTDYLVVAAEASRDWKHSHEGTKIIRAM 61 Query: 703 QL 704 +L Sbjct: 62 EL 63 >gi|124027693|ref|YP_001013013.1| hypothetical protein Hbut_0815 [Hyperthermus butylicus DSM 5456] gi|123978387|gb|ABM80668.1| conserved archaeal protein [Hyperthermus butylicus DSM 5456] Length = 273 Score = 39.4 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEI 647 + L+RVP +G A+ IVEF + +E L + P R ++ + S++ Sbjct: 209 DPTTAKFRELLRVPGIGPRTARRIVEF--REKGELTLERLRNILGPRWKRAQRYLDTSKL 266 Query: 648 EN-KKLV 653 K+LV Sbjct: 267 SGAKRLV 273 >gi|291302917|ref|YP_003514195.1| competence protein ComEA helix-hairpin-helix repeat protein [Stackebrandtia nassauensis DSM 44728] gi|290572137|gb|ADD45102.1| competence protein ComEA helix-hairpin-helix repeat protein [Stackebrandtia nassauensis DSM 44728] Length = 225 Score = 39.4 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 20/49 (40%) Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 + N L +P +G + A +IVE+ + +V+ L + Sbjct: 159 NAPGEPVNLNKATEDELATLPGIGPVTAASIVEYREQSGGFDSVDQLTE 207 >gi|222153373|ref|YP_002562550.1| competence protein [Streptococcus uberis 0140J] gi|222114186|emb|CAR42718.1| putative competence protein [Streptococcus uberis 0140J] Length = 226 Score = 39.4 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%) Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 + + N L ++P +G+ AQ I++ + +++ LL EK + Sbjct: 162 DQKVNINKATIEDLRKIPGIGEKRAQEILDARDSKGGFKSIDDLLTISGIGQKTLEKIKN 221 Query: 645 SEI 647 I Sbjct: 222 DII 224 >gi|145339101|ref|NP_189979.3| unknown protein [Arabidopsis thaliana] gi|49823526|gb|AAT68746.1| hypothetical protein At3g43930 [Arabidopsis thaliana] gi|332644324|gb|AEE77845.1| BRCT domain-containing DNA repair protein [Arabidopsis thaliana] Length = 502 Score = 39.4 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 1/37 (2%) Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + TG L K R + +E +LG Sbjct: 49 PPVRSDGPFSGLIICVTG-LSKEARKQVKEATERLGG 84 >gi|316974457|gb|EFV57944.1| putative calcium binding EGF domain protein [Trichinella spiralis] Length = 1164 Score = 39.4 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 36/380 (9%), Positives = 81/380 (21%), Gaps = 50/380 (13%) Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG--EVYIS-- 194 I+ YE G + DG++G D + I I + LN + + G + Sbjct: 215 ISHLYENGSYAAYCNCDDGYTGSDCATDINECSDIANPVCLNNGKCVNEVGSYKCICPIR 274 Query: 195 ----KNDFLALNDEMIAVGRKP--------YANPRNAASGILRRLNPTDITRYLN--FFV 240 +F + S I + + Sbjct: 275 FDGRNCEFETDMCTLNPCQNNASCVTKSELKDGYECLCSDIFTGKTCETRIDFCQGITCM 334 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV---------SYYNEMKSI 291 +G ++ + + + + + G+ + Sbjct: 335 YGGTCSNLNEGGYECLCKPMLSGKHCEKISMCEEISCNFGVCKYSVDESSVFCECKNGYT 394 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 DI+ +Y+ + + S + KF +I R+ Sbjct: 395 GKFCDSDINECIYQENPCKNNGTCVNTSGSYKCECPSKFEGTHCEISKDH-EIDPCRSNP 453 Query: 352 LT------------------PVARLEPVNIGGA--LITNATLHNEDYIKGLDASGKVMRG 391 + E N T N D + + + Sbjct: 454 CSNQATCITLSDDLEEYECKCRIGFEGRLCEKKIDYCKNVTCANGGECINTDDNNYICKC 513 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 G R +++ + + + + C ++ Sbjct: 514 KTGF-SGRHCEEIRICDLVSCIHGTCKYDLFENG-DYVSFCNCNPGYQGKDCSIDIDECA 571 Query: 452 LVAAHRCTGGLACSAQQLER 471 + C C Sbjct: 572 DKVNYPCLNNGTCFNDIGSY 591 >gi|268325930|emb|CBH39518.1| putative ATP-dependent RNA helicase [uncultured archaeon] Length = 780 Score = 39.4 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 10/65 (15%) Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F + ++G R L + + + L+ V VGD A+ I + Sbjct: 723 FVSALSNIGIMTTRKLLAKFKTIERIMAASK----------EELMEVENVGDKTAEHIKK 772 Query: 615 FYQNP 619 + Sbjct: 773 VFSTE 777 >gi|226309777|ref|YP_002769671.1| DNA integrity scanning protein DisA [Brevibacillus brevis NBRC 100599] gi|226092725|dbj|BAH41167.1| DNA integrity scanning protein DisA [Brevibacillus brevis NBRC 100599] Length = 358 Score = 39.4 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 38/124 (30%), Gaps = 11/124 (8%) Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR-RNISLERFIFSLGIRHVG 563 R P+ L R E + + + + ++S + IR + Sbjct: 243 RDPSYSPDLVLRDMKKLNSEEMLELTSFLRTLGYSSNASMLDESVSPRGYRILYKIRRLP 302 Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623 I +L +++ L V +G++ A+AI E + + Sbjct: 303 VTIISNLVEHFHHLPRIMMAT----------IQELDEVEGIGEVRARAIKEGLKRIQEQV 352 Query: 624 AVEA 627 ++ Sbjct: 353 FIDR 356 >gi|282882711|ref|ZP_06291318.1| late competence protein [Peptoniphilus lacrimalis 315-B] gi|281297372|gb|EFA89861.1| late competence protein [Peptoniphilus lacrimalis 315-B] Length = 204 Score = 39.4 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 6/105 (5%) Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 DS N + +S E I+ S A N +I N+ L+ Sbjct: 101 DSCNLAKKLSDEDKIYIKTFDESADNNFNI-----DSSTAKAISSNILINLNSASKDELM 155 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 ++P VG A I+++ + +VE L + EK Sbjct: 156 KIPGVGPKTADKIIDY-REKFQFKSVEDLKNVDGIGDKKFEKLKD 199 >gi|260881563|ref|ZP_05404712.2| competence protein [Mitsuokella multacida DSM 20544] gi|260848766|gb|EEX68773.1| competence protein [Mitsuokella multacida DSM 20544] Length = 224 Score = 39.4 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 26/70 (37%) Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634 S + + + N L +P +G +AQ I+EF + A+E + K Sbjct: 151 KSGTSSKAAPSGPVNINTASAEELDTLPGIGPAMAQRIIEFRETEGAFTAIEDIKKVKGI 210 Query: 635 SIGRHEKNVS 644 + EK Sbjct: 211 GEAKFEKMKD 220 >gi|45358958|ref|NP_988515.1| Hef nuclease [Methanococcus maripaludis S2] gi|45047824|emb|CAF30951.1| Helix-hairpin-helix motif:DEAD/DEAH box helicase:Helicase, C-terminal:Helix-hairpin-helix DNA-binding, class 1:ERCC4 domain [Methanococcus maripaludis S2] Length = 752 Score = 39.4 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 10/57 (17%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 G+ VG +A +L + S +N L V VG I A+ I E Sbjct: 698 GLPDVGPVMAENLLDNFNSVENIFTASEK----------ELTSVDGVGPITAKKIRE 744 >gi|296119910|ref|ZP_06838464.1| competence protein [Corynebacterium ammoniagenes DSM 20306] gi|295967064|gb|EFG80335.1| competence protein [Corynebacterium ammoniagenes DSM 20306] Length = 225 Score = 39.4 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%) Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 +++I N+ L+ +P VG++ A+AIV + +VE LL + EK Sbjct: 159 SADSSLINLNSATAAELMELPGVGEVTAEAIVSHRDTAGSFTSVEQLLNVSGIGPAKFEK 218 Query: 642 NVSS 645 Sbjct: 219 LQDQ 222 >gi|218194147|gb|EEC76574.1| hypothetical protein OsI_14406 [Oryza sativa Indica Group] gi|218194148|gb|EEC76575.1| hypothetical protein OsI_14407 [Oryza sativa Indica Group] gi|222626205|gb|EEE60337.1| hypothetical protein OsJ_13437 [Oryza sativa Japonica Group] Length = 322 Score = 39.4 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 9/22 (40%), Positives = 12/22 (54%) Query: 36 YQYSKPIILDSEYDALKRRCDA 57 Y PI+ D+E+D LK R Sbjct: 150 YAAGNPIMSDAEFDQLKLRLKK 171 >gi|115456709|ref|NP_001051955.1| Os03g0857400 [Oryza sativa Japonica Group] gi|30102983|gb|AAP21396.1| unknown protein [Oryza sativa Japonica Group] gi|108712199|gb|ABF99994.1| expressed protein [Oryza sativa Japonica Group] gi|113550426|dbj|BAF13869.1| Os03g0857400 [Oryza sativa Japonica Group] gi|215704395|dbj|BAG93829.1| unnamed protein product [Oryza sativa Japonica Group] Length = 324 Score = 39.4 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 9/22 (40%), Positives = 12/22 (54%) Query: 36 YQYSKPIILDSEYDALKRRCDA 57 Y PI+ D+E+D LK R Sbjct: 152 YAAGNPIMSDAEFDQLKLRLKK 173 >gi|3258335|dbj|BAA31018.1| 90aa long hypothetical DNA excision repair protein [Pyrococcus horikoshii OT3] Length = 90 Score = 39.4 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 10/56 (17%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + +V +AR L +++ S + L++V +G+ IA+ I Sbjct: 34 SLPNVSTTLARRLLRHFGSVEKVFTA----------SVPELMKVEGIGEKIAREIR 79 >gi|302497759|ref|XP_003010879.1| hypothetical protein ARB_02918 [Arthroderma benhamiae CBS 112371] gi|291174424|gb|EFE30239.1| hypothetical protein ARB_02918 [Arthroderma benhamiae CBS 112371] Length = 1048 Score = 39.4 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 10/89 (11%) Query: 653 VFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKI 708 VF+G L + GA +++ ++ +T ++ G N +K+ +A + +KI Sbjct: 730 VFSGVLPLGTDTQNADISLWAKSFGATITSKINSRTTHLVAGRNRTAKVREATRYPKIKI 789 Query: 709 MNEEQFL------FLLQQYNTTLRIHDDD 731 + + L L + + +H DD Sbjct: 790 VTVQWLLDCMIQWKHLDEEPYLVPVHPDD 818 >gi|294790861|ref|ZP_06756019.1| excinuclease ABC subunit C [Scardovia inopinata F0304] gi|294458758|gb|EFG27111.1| excinuclease ABC subunit C [Scardovia inopinata F0304] Length = 775 Score = 39.4 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 32/108 (29%), Gaps = 13/108 (12%) Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 P + + L ++Q+ + + Y + + I +G Sbjct: 646 PHEEYPLIMKRQSEGMYLMQRVRDESHRFAITYHRKKRSKGSLRSA---LDSIEGIGLSY 702 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + L ++ S + Q L V VG A+AI + Sbjct: 703 QKRLLNHFGSVKAMRQAT----------VQELQEVRGVGAKKAEAIYQ 740 >gi|330686124|gb|EGG97745.1| comEA protein [Staphylococcus epidermidis VCU121] Length = 223 Score = 39.4 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%) Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 I N+ L++VP +G A+ I+EF + +++ L EK Sbjct: 160 KTPINLNSATEEQLMKVPGIGPSKAKEIIEFKNQKGSFNSIDDLKNIKGFGPKTFEK 216 >gi|300390220|gb|ADK10922.1| ComEA [Thermoanaerobacterium saccharolyticum] Length = 204 Score = 39.4 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRH 639 N I N L +P +G++ AQ I++F + N +E ++ + P + Sbjct: 137 NAANGKININTATKEELDTLPGIGEVTAQRIIDFREQHGNFQKIEDIMNVSRIGPKLFEQ 196 Query: 640 EKNV 643 K+ Sbjct: 197 IKDK 200 >gi|167746033|ref|ZP_02418160.1| hypothetical protein ANACAC_00728 [Anaerostipes caccae DSM 14662] gi|167654548|gb|EDR98677.1| hypothetical protein ANACAC_00728 [Anaerostipes caccae DSM 14662] Length = 1061 Score = 39.4 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 13/76 (17%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + +++L++L+ ++ Q K I +YDAL+R +L R E Sbjct: 67 ETKEKLATLKTAAEQANE---QLQKGEISQEQYDALQREIAETEA---ELKRLESQASKT 120 Query: 76 NK-------IGGEMNL 84 N+ +G ++ Sbjct: 121 NQTLTKIGEVGSKVES 136 >gi|15643810|ref|NP_228858.1| comEA protein-related protein [Thermotoga maritima MSB8] gi|4981594|gb|AAD36129.1|AE001765_8 comEA protein-related protein [Thermotoga maritima MSB8] Length = 181 Score = 39.4 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 19/75 (25%) Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648 N L+ +P +G + AQ I+++ S KNVS Sbjct: 48 ELNTASLEDLMSIPGIGPVKAQRIIDY------------RESHGGFSSVEELKNVSGI-- 93 Query: 649 NKKLVFTGTLQKIQR 663 +K TL+KI R Sbjct: 94 GEK-----TLEKISR 103 >gi|254441463|ref|ZP_05054956.1| helicase, RecD/TraA family [Octadecabacter antarcticus 307] gi|198251541|gb|EDY75856.1| helicase, RecD/TraA family [Octadecabacter antarcticus 307] Length = 729 Score = 39.4 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 15/148 (10%), Positives = 41/148 (27%), Gaps = 10/148 (6%) Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 + L K+ + + + + + + Sbjct: 18 ERVTFHSLESGFCVLRLKARGHRDLVTTIGHAAMISAGEWVTASGDWINDRDHGLQFKAR 77 Query: 539 YDSINK-RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 + + +E+++ S IR +G A+ + K + ++ + Sbjct: 78 FLRTSAPSSLEGIEKYLGSGMIRGIGPVYAKRMVKKFG---------KDVFDLIEAEPER 128 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAV 625 L V +G A I + + + I + Sbjct: 129 LREVEGIGPKRADKITSAWADQKVIREI 156 >gi|311064421|ref|YP_003971146.1| excinuclease ABC subunit C [Bifidobacterium bifidum PRL2010] gi|310866740|gb|ADP36109.1| UvrC Excinuclease ABC subunit C [Bifidobacterium bifidum PRL2010] Length = 780 Score = 39.4 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 13/113 (11%) Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 P D + + ++Q+ + + Y +R+ GI VG Sbjct: 681 PDDEYPIILKRQSEGMYLLQRVRDESHRFAITYHRQTRRKGALRSA---LDGIPGVGETY 737 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 + L ++ S + L V +G A+AI Sbjct: 738 QKRLLSHFGSVRAMRDA----------SVEELEAVKGIGHAKAEAIHTALHTE 780 >gi|310287507|ref|YP_003938765.1| Excinuclease ABC subunit C [Bifidobacterium bifidum S17] gi|309251443|gb|ADO53191.1| Excinuclease ABC subunit C [Bifidobacterium bifidum S17] Length = 780 Score = 39.4 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 13/113 (11%) Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 P D + + ++Q+ + + Y +R+ GI VG Sbjct: 681 PDDEYPIILKRQSEGMYLLQRVRDESHRFAITYHRQTRRKGALRSA---LDGIPGVGETY 737 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 + L ++ S + L V +G A+AI Sbjct: 738 QKRLLSHFGSVRAMRDA----------SVEELEAVKGIGHAKAEAIHTALHTE 780 >gi|158425590|ref|YP_001526882.1| excinuclease ABC C subunit [Azorhizobium caulinodans ORS 571] gi|158332479|dbj|BAF89964.1| excinuclease ABC C subunit [Azorhizobium caulinodans ORS 571] Length = 718 Score = 39.4 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 10/83 (12%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ R I VG R+L +++ + + + Sbjct: 642 HRFAIGSHRARRKKDISDAGLQAIPGVGPTRKRALLRHFGTLKAIERA----------SL 691 Query: 596 LSLIRVPLVGDIIAQAIVEFYQN 618 L +VP V A+AI E++ + Sbjct: 692 ADLEQVPGVNASTARAIYEYFHD 714 >gi|3220000|sp|P26446|PARP1_CHICK RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1; AltName: Full=NAD(+) ADP-ribosyltransferase 1; Short=ADPRT 1; AltName: Full=Poly[ADP-ribose] synthase 1 Length = 1011 Score = 39.4 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 11/86 (12%) Query: 637 GRHEKNVSSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII-----IV 690 + N K+ T G L K + + + V +LG ++ ++ T I + Sbjct: 377 ETVTAPQDKPLTNMKI-LTLGKLSK-NKEEVKNIVEELGGKMTTTANKATLCISTQKEV- 433 Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLF 716 + K+E+ + V++++E +FL Sbjct: 434 -EKMSKKMEEVKDAKVRVVSE-EFLK 457 >gi|45383984|ref|NP_990594.1| poly [ADP-ribose] polymerase 1 [Gallus gallus] gi|63743|emb|CAA36917.1| unnamed protein product [Gallus gallus] Length = 1011 Score = 39.4 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 11/86 (12%) Query: 637 GRHEKNVSSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII-----IV 690 + N K+ T G L K + + + V +LG ++ ++ T I + Sbjct: 377 ETVTAPQDKPLTNMKI-LTLGKLSK-NKEEVKNIVEELGGKMTTTANKATLCISTQKEV- 433 Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLF 716 + K+E+ + V++++E +FL Sbjct: 434 -EKMSKKMEEVKDAKVRVVSE-EFLK 457 >gi|294813204|ref|ZP_06771847.1| DNA integrity scanning protein disA [Streptomyces clavuligerus ATCC 27064] gi|326441684|ref|ZP_08216418.1| DNA integrity scanning protein DisA [Streptomyces clavuligerus ATCC 27064] gi|294325803|gb|EFG07446.1| DNA integrity scanning protein disA [Streptomyces clavuligerus ATCC 27064] Length = 383 Score = 39.4 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 10/69 (14%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 + + I L +++ Q L V VG+ A+++ E Sbjct: 323 VPRLPGAIIERLVEHFGGLQKLLAA----------SVDDLQAVDGVGEARARSVREGLSR 372 Query: 619 PRNICAVEA 627 +E Sbjct: 373 LAESSILER 381 >gi|320010088|gb|ADW04938.1| DNA integrity scanning, DisA, linker region [Streptomyces flavogriseus ATCC 33331] Length = 374 Score = 39.4 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 10/69 (14%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 + + I L +++ Q L V VG+ A+++ E Sbjct: 314 VPRLPGAIIERLVEHFGGLQKLLAA----------SVDDLQAVDGVGEARARSVREGLSR 363 Query: 619 PRNICAVEA 627 +E Sbjct: 364 LAESSILER 372 >gi|300023522|ref|YP_003756133.1| excinuclease ABC, C subunit [Hyphomicrobium denitrificans ATCC 51888] gi|299525343|gb|ADJ23812.1| excinuclease ABC, C subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 670 Score = 39.4 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 10/83 (12%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ + I +G R+L K++ S A + Sbjct: 595 HRFAIGTHRAKRAKALGVNPLDEIDGIGPTRKRALLKHFGS----------AKAVSRAGI 644 Query: 596 LSLIRVPLVGDIIAQAIVEFYQN 618 L V + +A+ I +F+ + Sbjct: 645 EDLKAVEGISADMARRIYDFFHD 667 >gi|297192897|ref|ZP_06910295.1| DNA integrity scanning protein disA [Streptomyces pristinaespiralis ATCC 25486] gi|197722614|gb|EDY66522.1| DNA integrity scanning protein disA [Streptomyces pristinaespiralis ATCC 25486] Length = 374 Score = 39.4 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 10/69 (14%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 + + I L +++ Q L V VG+ A+++ E Sbjct: 314 VPRLPGAIIERLVEHFGGLQKLLAA----------SVDDLQAVDGVGEARARSVREGLSR 363 Query: 619 PRNICAVEA 627 +E Sbjct: 364 LAESSILER 372 >gi|68062632|ref|XP_673324.1| replication factor C subunit 1 [Plasmodium berghei strain ANKA] gi|56491097|emb|CAH96916.1| replication factor C subunit 1, putative [Plasmodium berghei] Length = 512 Score = 39.4 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 14/50 (28%) Query: 675 AVVSAILSRKTDIIIVGD--------NPGSKLEKAQQLG------VKIMN 710 V + +S KT +I G+ N G K +KA +L +KI+N Sbjct: 1 GSVMSAVSSKTHYLIHGEYLEDGRLYNEGKKYQKAYELSKQSKSIIKILN 50 >gi|311742584|ref|ZP_07716393.1| excision endonuclease subunit UvrC [Aeromicrobium marinum DSM 15272] gi|311314212|gb|EFQ84120.1| excision endonuclease subunit UvrC [Aeromicrobium marinum DSM 15272] Length = 648 Score = 39.4 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 10/57 (17%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + +G ++L + + S + + +VP +G AQ+IV+ Sbjct: 581 DVAGLGPTRRKALMRQFGSLKRLRAAT----------VEEVAQVPGIGPATAQSIVQ 627 >gi|195062453|ref|XP_001996195.1| GH22365 [Drosophila grimshawi] gi|193899690|gb|EDV98556.1| GH22365 [Drosophila grimshawi] Length = 992 Score = 39.4 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 20/69 (28%) Query: 657 TLQKIQRHKA--QEYVTQLGAVVSAILSRKTDIII-----------VGDNPGSKLEKAQQ 703 +L ++ +A ++ + +LG T I++ V + S+++KA++ Sbjct: 389 SLIGMKDSEAEIKKRIGKLGGKF------DTKILVDTIAIISTEKEV-EKMSSRMKKAKE 441 Query: 704 LGVKIMNEE 712 LG+ I+ E+ Sbjct: 442 LGIHIIPEK 450 >gi|188586920|ref|YP_001918465.1| helicase, RecD/TraA family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351607|gb|ACB85877.1| helicase, RecD/TraA family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 726 Score = 39.4 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 9/79 (11%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I+ +G + A SL +++ ++ + L VP +G A I +Q Sbjct: 92 IKGIGPKTAESLVEHFG---------KEVLQVIENTPEKLQEVPGIGKEKAAQISRGFQE 142 Query: 619 PRNICAVEALLKEVSPSIG 637 + I + L+E S Sbjct: 143 HKQIKDIMVFLQEFGVSPA 161 >gi|323507821|emb|CBQ67692.1| related to DNA topoisomerase II binding protein [Sporisorium reilianum] Length = 1201 Score = 39.4 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 16/100 (16%) Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG------TLQKIQRHKAQEYVTQL 673 + + + + ++ + TG TL + R L Sbjct: 48 HFRRLRDDGRDHGAHLDSDFIGSSARPLKGAIISITGLGDTKATLTQYARE--------L 99 Query: 674 GAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEE 712 GA V L+ +I D PGS K A +LG+ I++ + Sbjct: 100 GARVEGNLTEDVTHLIA-DRPGSEKYRFALELGMHIVSPD 138 >gi|170053161|ref|XP_001862547.1| poly [Culex quinquefasciatus] gi|167873802|gb|EDS37185.1| poly [Culex quinquefasciatus] Length = 1000 Score = 39.4 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 37/84 (44%), Gaps = 13/84 (15%) Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----- 691 K + N + V G + + + ++ + +LG V+ ++ T I Sbjct: 381 EPKIKREKPPLYNLEFVILGKTET-PKDQLKDKILKLGGKVTTKIT-NT---IAAIISTP 435 Query: 692 ---DNPGSKLEKAQQLGVKIMNEE 712 + GS++++A+ + ++++ E+ Sbjct: 436 AEVERMGSRMQEAKDMQIQVVPED 459 >gi|324523831|gb|ADY48308.1| DNA excision repair protein ERCC-1 [Ascaris suum] Length = 226 Score = 39.4 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 25/90 (27%), Gaps = 10/90 (11%) Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 N+ GIR + A+ L + S A Sbjct: 143 QEKKKKRQGISETNESCQQIQRAVDLLCGIRSISTSDAQRLIGTFGSIAAIANA------ 196 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 D L P +G + A+ I F++ P Sbjct: 197 ----DVERLSLCPGLGPVKAENIFMFFRIP 222 >gi|32398840|emb|CAD98550.1| excision repair cross-complementing rodent repair deficiency,complementation group 1, possible [Cryptosporidium parvum] Length = 224 Score = 39.4 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 10/62 (16%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 + + + +L K++ S L ++ +G I A+ I E + Sbjct: 169 SLPRINKTDSENLLKHFGSISKVVNASE----------EELSKIQGIGPIKAKVISEIFS 218 Query: 618 NP 619 Sbjct: 219 TE 220 >gi|167759418|ref|ZP_02431545.1| hypothetical protein CLOSCI_01765 [Clostridium scindens ATCC 35704] gi|167662975|gb|EDS07105.1| hypothetical protein CLOSCI_01765 [Clostridium scindens ATCC 35704] Length = 202 Score = 39.4 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 25/66 (37%) Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 A+ + I N L+ + +G+ A AI+ + + ++E L++ G Sbjct: 135 AEASDGKINLNTAAKEQLMTLTGIGETKAAAIIRYREENGGFQSIEELMEVEGIKEGVFN 194 Query: 641 KNVSSE 646 K Sbjct: 195 KIKDQI 200 >gi|145297875|ref|YP_001140716.1| ComEA protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142850647|gb|ABO88968.1| ComEA protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 106 Score = 39.4 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 19/56 (33%) Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 N L + +G+ AQAIV+F Q VE L E N Sbjct: 46 NLNTASINELTALKGIGEKKAQAIVDFRQKQGKFTTVEQLADVSGIGPATLEANRD 101 >gi|296420139|ref|XP_002839638.1| hypothetical protein [Tuber melanosporum Mel28] gi|295635821|emb|CAZ83829.1| unnamed protein product [Tuber melanosporum] Length = 866 Score = 39.4 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 646 EIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 + + TG +Q++ R K ++ GA L++ +I + G K + A+ Sbjct: 108 TFQGLAISLTG-IQELSERKKIEDIARSHGASYHPDLTKSVSHLIAAISEGKKYDFARNN 166 Query: 705 GVKIMNEEQFLFLLQQ 720 G++I+ E L++ Sbjct: 167 GIRIVTIEWLYDSLER 182 >gi|295694808|ref|YP_003588046.1| DNA integrity scanning, DisA, linker region [Bacillus tusciae DSM 2912] gi|295410410|gb|ADG04902.1| DNA integrity scanning, DisA, linker region [Bacillus tusciae DSM 2912] Length = 361 Score = 39.4 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 21/51 (41%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 +N ++ + L V +G++ A+AI E + R + ++ Sbjct: 309 VENLVKQFQGLSGVMGATIEQLDDVEGIGEVRARAIREGLKRVRELVLIDR 359 >gi|186701836|ref|ZP_02971504.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|186701125|gb|EDU19407.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 1442 Score = 39.4 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 5/95 (5%) Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----SYQNFAQEINNIIAHNNDDW 595 + +K R+ + L ++ + + LA+ + S + I NN Sbjct: 1319 EQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQNNAII 1378 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 I + +G+ +A +I+E +N + +E L Sbjct: 1379 PPFIAIQGLGETVANSIIEA-RNQKAFSTIEDLKN 1412 >gi|158319509|ref|YP_001512016.1| DNA integrity scanning protein DisA [Alkaliphilus oremlandii OhILAs] gi|158139708|gb|ABW18020.1| protein of unknown function DUF147 [Alkaliphilus oremlandii OhILAs] Length = 358 Score = 39.4 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 7/51 (13%), Positives = 18/51 (35%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 N ++ + L V +G+ A+AI + + + ++ Sbjct: 306 IDNLLKQFISFQKILKASTEQLDDVDGIGEARARAIKDGLRRLQEQVLLDR 356 >gi|170727433|ref|YP_001761459.1| helix-hairpin-helix repeat-containing competence protein ComEA [Shewanella woodyi ATCC 51908] gi|169812780|gb|ACA87364.1| competence protein ComEA helix-hairpin-helix repeat protein [Shewanella woodyi ATCC 51908] Length = 107 Score = 39.4 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 30/64 (46%) Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 AQ + I N L+R+ +G+ A+AI+EF Q N AV+ L + E Sbjct: 40 AQAQSLSININTAQVADLVRLKGIGEAKAKAIIEFRQANGNFKAVKELEQVKGIGAKLVE 99 Query: 641 KNVS 644 KN S Sbjct: 100 KNRS 103 >gi|239050005|ref|NP_001141772.2| hypothetical protein LOC100273908 [Zea mays] gi|194702532|gb|ACF85350.1| unknown [Zea mays] gi|238908946|gb|ACF87023.2| unknown [Zea mays] Length = 322 Score = 39.4 bits (90), Expect = 2.5, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%) Query: 25 EQEISYHDDCYYQYSKPIILDSEYDALKRRCD 56 EQ++ Y PI+ D+E+D LK R Sbjct: 139 EQKLLEASLAY-TSGNPIMSDAEFDELKLRLK 169 >gi|94987143|ref|YP_595076.1| nuclease subunit of the excinuclease complex [Lawsonia intracellularis PHE/MN1-00] gi|119367663|sp|Q1MQH2|UVRC_LAWIP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|94731392|emb|CAJ54755.1| Nuclease subunit of the excinuclease complex [Lawsonia intracellularis PHE/MN1-00] Length = 621 Score = 39.4 bits (90), Expect = 2.5, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 10/67 (14%) Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 L I +G A+ L ++ + + L +P +G+ A+ + E Sbjct: 565 LLRIPGIGQATAKLLWSHFKTVEAMTCAT----------IKDLEAIPGIGEAKARMLAER 614 Query: 616 YQNPRNI 622 Q+ RN Sbjct: 615 LQSLRNQ 621 >gi|88602972|ref|YP_503150.1| Hef nuclease [Methanospirillum hungatei JF-1] gi|88188434|gb|ABD41431.1| helicase-like protein [Methanospirillum hungatei JF-1] Length = 750 Score = 39.4 bits (90), Expect = 2.5, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 10/56 (17%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +G + AR+L + S + + L++VP +G A+ I E Sbjct: 698 FPDLGPKYARALLTAFGSLKAIIDA----------EKEELLQVPGIGAKKAEMIYE 743 >gi|304440493|ref|ZP_07400380.1| competence protein comEA [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370971|gb|EFM24590.1| competence protein comEA [Peptoniphilus duerdenii ATCC BAA-1640] Length = 193 Score = 39.4 bits (90), Expect = 2.5, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 8/80 (10%) Query: 569 SLAKYYLSYQNF-------AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 +LA+ + E ++ I N L +P VG +A I+++ + Sbjct: 107 NLARKLKDEEKITIKSYLDKDEEDSKININTASKDMLTSIPGVGSKMADKIIKY-RQEHP 165 Query: 622 ICAVEALLKEVSPSIGRHEK 641 +E LL + E+ Sbjct: 166 FNTIEDLLNITGIGKKKFEE 185 >gi|256752162|ref|ZP_05493028.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermoanaerobacter ethanolicus CCSD1] gi|256748976|gb|EEU62014.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermoanaerobacter ethanolicus CCSD1] Length = 201 Score = 39.4 bits (90), Expect = 2.5, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKN 642 N I N L +P +G + A+ I+EF +N + +E ++ + P + K+ Sbjct: 137 NEKININTATKEELQTLPGIGPVTAERIIEFRENKGSFKKIEDIMNVPRIGPKMFEQIKD 196 Query: 643 V 643 Sbjct: 197 K 197 >gi|251799673|ref|YP_003014404.1| DNA integrity scanning protein DisA [Paenibacillus sp. JDR-2] gi|247547299|gb|ACT04318.1| protein of unknown function DUF147 [Paenibacillus sp. JDR-2] Length = 358 Score = 39.4 bits (90), Expect = 2.5, Method: Composition-based stats. Identities = 7/51 (13%), Positives = 18/51 (35%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 N + + L V +G++ A+AI + + + ++ Sbjct: 306 MNNLIERFGRLPHILMATIDELDEVDGIGEVRARAIKDGLKRIQEQMFIDR 356 >gi|332266509|ref|XP_003282249.1| PREDICTED: zinc finger protein 57-like [Nomascus leucogenys] Length = 616 Score = 39.4 bits (90), Expect = 2.5, Method: Composition-based stats. Identities = 23/289 (7%), Positives = 51/289 (17%), Gaps = 4/289 (1%) Query: 158 HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPR 217 G + + P E + + K A + Sbjct: 289 KCGTVFTHLSSLKRHVKSHCGRTAPPCEECKQACICPSHLHSHGRTNTEEKPYKCQACRQ 348 Query: 218 NAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANT 277 + T + FA + + + R A Sbjct: 349 TFQHPHSLSHHVKTHTAEKTYKWEQCRMAFNGFASFTRHVRTHTKDRPYKCQECGR-AFI 407 Query: 278 FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAST 337 + + + + G + + + + P + T Sbjct: 408 YPSTLQRHMTTHTGEKPYKCQHCGKAFTYPQAFQRHEKTHMGEKPYECKQCGKTFSWSET 467 Query: 338 RLLDIDIQIGR--TGILTPVARLEPVNIGGALITNATLHNEDYIKGLD-ASGKVMRGGRD 394 + + I G + T K A Sbjct: 468 LRVHMRIHTGEKLYKCENYGKAFTSSRSFQGHLRTHTGEKPYECKQCGKAFTWSSTFREH 527 Query: 395 IRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443 +R+ + + + + H P C C Sbjct: 528 VRIHTQEQLYKCEQCGKAFTWSSTLHNHVRMHTGEKPHKCKQCGMPFKW 576 >gi|308273064|emb|CBX29668.1| Uncharacterized protein MJ0504 [uncultured Desulfobacterium sp.] Length = 194 Score = 39.4 bits (90), Expect = 2.5, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 9/60 (15%) Query: 629 LKEVSP--SIGRHEKNVSSEIEN-KKLVFT---GTLQKIQR---HKAQEYVTQLGAVVSA 679 +KEV S G K E K +V T G L+ +R A++++ + GAVV + Sbjct: 39 IKEVVVASSKGETAKKALEIFEGFKVVVVTSHSGFLEPFKRVMPDSAKKHLEERGAVVIS 98 >gi|225175308|ref|ZP_03729303.1| excinuclease ABC, C subunit [Dethiobacter alkaliphilus AHT 1] gi|225169060|gb|EEG77859.1| excinuclease ABC, C subunit [Dethiobacter alkaliphilus AHT 1] Length = 620 Score = 39.4 bits (90), Expect = 2.5, Method: Composition-based stats. Identities = 11/91 (12%), Positives = 28/91 (30%), Gaps = 10/91 (10%) Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 + + +R+ R L + +G ++L K++ S + Sbjct: 538 QRVRDEAHRFVITYQRKRRPGVRGSLLLDVPGIGEARRKALLKHFGSIAEMRRA------ 591 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 L V + + +A + E+ + Sbjct: 592 ----SVEQLAEVEGMNEAVAATLYEYLREED 618 >gi|170289532|ref|YP_001739770.1| helix-hairpin-helix repeat-containing competence protein ComEA [Thermotoga sp. RQ2] gi|170177035|gb|ACB10087.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermotoga sp. RQ2] Length = 181 Score = 39.4 bits (90), Expect = 2.5, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 19/75 (25%) Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648 N L+ +P +G + AQ I+++ S KNVS Sbjct: 48 ELNTASLEDLMSIPGIGPVKAQRIIDY------------RESHGGFSSVEELKNVSGI-- 93 Query: 649 NKKLVFTGTLQKIQR 663 +K TL+KI R Sbjct: 94 GEK-----TLEKISR 103 >gi|300214350|gb|ADJ78766.1| Bifunctional protein folD (Includes: Methylenetetrahydrofolate dehydrogenase; Methenyltetrahydrofolate cyclohydrolase ) [Lactobacillus salivarius CECT 5713] Length = 285 Score = 39.4 bits (90), Expect = 2.6, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 26/79 (32%) Query: 676 VVSAILSRKTDII------------IVGDNPGS------KLEKAQQLGVKIMN------- 710 + +S K ++ +VG++P S K + A LG++ ++ Sbjct: 14 KIRTNVSEKVSLLKQEGITPKLVVILVGEDPASQVYVRNKRKTAHALGIEAVDIRLPENV 73 Query: 711 -EEQFLFLLQQYNTTLRIH 728 E++ + L+ + N+ +H Sbjct: 74 EEDELIRLIDELNSDGTVH 92 >gi|227890596|ref|ZP_04008401.1| methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [Lactobacillus salivarius ATCC 11741] gi|227867534|gb|EEJ74955.1| methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [Lactobacillus salivarius ATCC 11741] Length = 292 Score = 39.4 bits (90), Expect = 2.6, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 26/79 (32%) Query: 676 VVSAILSRKTDII------------IVGDNPGS------KLEKAQQLGVKIMN------- 710 + +S K ++ +VG++P S K + A LG++ ++ Sbjct: 21 KIRTNVSEKVSLLKQEGITPKLVVILVGEDPASQVYVRNKRKTAHALGIEAVDIRLPENV 80 Query: 711 -EEQFLFLLQQYNTTLRIH 728 E++ + L+ + N+ +H Sbjct: 81 EEDELIRLIDELNSDGTVH 99 >gi|90961509|ref|YP_535425.1| methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [Lactobacillus salivarius UCC118] gi|119369803|sp|Q1WUJ3|FOLD_LACS1 RecName: Full=Bifunctional protein FolD; Includes: RecName: Full=Methylenetetrahydrofolate dehydrogenase; Includes: RecName: Full=Methenyltetrahydrofolate cyclohydrolase gi|90820703|gb|ABD99342.1| Methylenetetrahydrofolate dehydrogenase (NADP+) / Methenyltetrahydrofolate cyclohydrolase [Lactobacillus salivarius UCC118] Length = 285 Score = 39.4 bits (90), Expect = 2.6, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 26/79 (32%) Query: 676 VVSAILSRKTDII------------IVGDNPGS------KLEKAQQLGVKIMN------- 710 + +S K ++ +VG++P S K + A LG++ ++ Sbjct: 14 KIRTNVSEKVSLLKQEGITPKLVVILVGEDPASQVYVRNKRKTAHALGIEAVDIRLPENV 73 Query: 711 -EEQFLFLLQQYNTTLRIH 728 E++ + L+ + N+ +H Sbjct: 74 EEDELIRLIDELNSDGTVH 92 >gi|117927438|ref|YP_871989.1| DNA integrity scanning protein DisA [Acidothermus cellulolyticus 11B] gi|226729430|sp|A0LRE3|DISA_ACIC1 RecName: Full=DNA integrity scanning protein disA gi|117647901|gb|ABK52003.1| protein of unknown function DUF147 [Acidothermus cellulolyticus 11B] Length = 368 Score = 39.0 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 10/69 (14%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I + + L +++ + Q L V VG+ A+++ E Sbjct: 308 IPRLPCAVIERLVEHFGTLQKLLAA----------SVDDLQAVEGVGESRARSVREGLSR 357 Query: 619 PRNICAVEA 627 +E Sbjct: 358 LAESSILER 366 >gi|313895693|ref|ZP_07829249.1| comEA protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312975819|gb|EFR41278.1| comEA protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 186 Score = 39.0 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 572 KYYLSYQNF--AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629 + + S + + I N + L +P +G ++ IVE+ + N +E + Sbjct: 108 QKFGSKTAVPAGNDTDGRININTANEKELQELPGIGPAMSARIVEYREANGNFKKIEDIK 167 Query: 630 KEVSPSIGRHEKNVS 644 K + EK Sbjct: 168 KIRGIGNAKFEKLKD 182 >gi|145337666|ref|NP_177856.2| MEI1 (meiosis defective 1); transcription coactivator [Arabidopsis thaliana] gi|332197842|gb|AEE35963.1| topoisomerase (DNA) II binding protein 1 [Arabidopsis thaliana] Length = 972 Score = 39.0 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 + T + +R ++ +++ G SA L++ +I G K + A++ G Sbjct: 184 PFSGLTICVT-RIPADERKGMEKVISEYGGSYSAELTKSCTHLIADAAEGDKYKVARKWG 242 Query: 706 -VKIMNEEQFLFLLQQY 721 ++I+ + F + + Sbjct: 243 HIQIVTRKWFQQSIDKK 259 >gi|34481719|emb|CAD54082.1| MEI1 protein [Arabidopsis thaliana] Length = 972 Score = 39.0 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 + T + +R ++ +++ G SA L++ +I G K + A++ G Sbjct: 184 PFSGLTICVT-RIPADERKGMEKVISEYGGSYSAELTKSCTHLIADAAEGDKYKVARKWG 242 Query: 706 -VKIMNEEQFLFLLQQY 721 ++I+ + F + + Sbjct: 243 HIQIVTRKWFQQSIDKK 259 >gi|219119748|ref|XP_002180627.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408100|gb|EEC48035.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 512 Score = 39.0 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 14/112 (12%) Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA--ILSR 683 + L V+P S ++ + TG + + + E + LG + + +S+ Sbjct: 10 KRLRSNVAP---VKSDRSSGPLKGAVICLTGIDPEEK-DQYHEMIVDLGGIYTRDLDVSK 65 Query: 684 KTDIIIVGDNPGSKLEKAQ-QLGVKIMNEEQF------LFLLQQYNTTLRIH 728 T +I D G+K E A+ ++I+ L+ + +L + Sbjct: 66 NT-HLIAVDPVGAKYETAKTTSSIRIVQPAWLESCFGNRALIDELKYSLDLP 116 >gi|159468702|ref|XP_001692513.1| predicted protein [Chlamydomonas reinhardtii] gi|158278226|gb|EDP03991.1| predicted protein [Chlamydomonas reinhardtii] Length = 333 Score = 39.0 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 10/22 (45%), Positives = 12/22 (54%) Query: 36 YQYSKPIILDSEYDALKRRCDA 57 Y KPI+ D +YDALK Sbjct: 134 YAKGKPIMTDEDYDALKAELRN 155 >gi|52631997|gb|AAU85397.1| predicted DNA-binding protein [uncultured archaeon GZfos12E1] Length = 507 Score = 39.0 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 41/166 (24%), Gaps = 9/166 (5%) Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF---LALNDEMIAVG 209 RG+G ++ I ++ + E+ E+R E F LN+ Sbjct: 95 TRGNGAVSFEIKTNAEREAEIKEIIRTQVSELSELREEGTNPGVVFIDSDVLNENREEKR 154 Query: 210 RKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVN 269 NA +L + + +F GL K Sbjct: 155 GILKRFYENAVREVLTIEDAYGLISEFHFDYFGL------KNKRGLIGALAAASFLVLQR 208 Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 N + K T + V+K D + Sbjct: 209 NFRKPDYYDFTYELIAYRQKKRWGTPRVIDETSVWKADAATYPLTW 254 >gi|154150356|ref|YP_001403974.1| Hef nuclease [Candidatus Methanoregula boonei 6A8] gi|153998908|gb|ABS55331.1| helicase domain protein [Methanoregula boonei 6A8] Length = 745 Score = 39.0 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 18/140 (12%), Positives = 37/140 (26%), Gaps = 11/140 (7%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 + + +I + +FT + + G+ Sbjct: 610 VMVIEGGDIYTQRDMNPNSLRGVLAALAIDMGITLLFTRDEQDTAQMLFVIAKREEGERG 669 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 L+ + + +I S +G + AR L ++ S Q Sbjct: 670 ERKLHPHKSFTSAKEEQEYIIS-AFPDIGLKNARLLLAHFGSVQGIVNAT---------- 718 Query: 595 WLSLIRVPLVGDIIAQAIVE 614 L+ V +G+ I E Sbjct: 719 LEELVAVKGIGEKTGGKIFE 738 >gi|5051421|emb|CAB44964.1| ComEA protein [Neisseria meningitidis] Length = 170 Score = 39.0 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 17/140 (12%), Positives = 32/140 (22%), Gaps = 1/140 (0%) Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 F L + + + L R L + + Sbjct: 11 PIIRGFLLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGK 70 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 + + + + N L +P +G A+AI E+ +V Sbjct: 71 TMKKMFVLF-CMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSV 129 Query: 626 EALLKEVSPSIGRHEKNVSS 645 + L K K Sbjct: 130 DDLTKVKGIGPAVLAKLKDQ 149 >gi|116193565|ref|XP_001222595.1| hypothetical protein CHGG_06500 [Chaetomium globosum CBS 148.51] gi|88182413|gb|EAQ89881.1| hypothetical protein CHGG_06500 [Chaetomium globosum CBS 148.51] Length = 399 Score = 39.0 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + + TG L R V ++GA + + T + + G + EKA +L + Sbjct: 159 LSGITIT-TGILPAAVREGLGAAVERIGAKIVDGVRIDTTHFVTTEGRGLQWEKANELNI 217 Query: 707 KIM 709 I+ Sbjct: 218 PIV 220 >gi|67612623|ref|XP_667238.1| excision repair cross-complementing rodent repair deficiency,complementation group 1 [Cryptosporidium hominis TU502] gi|54658355|gb|EAL37009.1| excision repair cross-complementing rodent repair deficiency,complementation group 1 [Cryptosporidium hominis] Length = 224 Score = 39.0 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 10/62 (16%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 + + + +L K++ S L ++ +G I A+ I E + Sbjct: 169 SLPRINKTDSENLLKHFGSISKVVNASE----------EELSKIQGIGPIKAKVISEVFS 218 Query: 618 NP 619 Sbjct: 219 TE 220 >gi|326389890|ref|ZP_08211454.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermoanaerobacter ethanolicus JW 200] gi|325994158|gb|EGD52586.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermoanaerobacter ethanolicus JW 200] Length = 201 Score = 39.0 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKN 642 N I N L +P +G + A+ I+EF +N + +E ++ + P + K+ Sbjct: 137 NEKININTATKEELQTLPGIGPVTAERIIEFRENKGSFKKIEDIMNVPRIGPKMFEQIKD 196 Query: 643 V 643 Sbjct: 197 K 197 >gi|317123124|ref|YP_004103127.1| DNA integrity scanning, DisA, linker region [Thermaerobacter marianensis DSM 12885] gi|315593104|gb|ADU52400.1| DNA integrity scanning, DisA, linker region [Thermaerobacter marianensis DSM 12885] Length = 355 Score = 39.0 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 9/69 (13%), Positives = 24/69 (34%), Gaps = 10/69 (14%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 + + + +L +++ S L V +G + A+AI + + Sbjct: 295 LPRLPVSVVENLVQHFGSLPRILAAT----------VEQLDDVEGIGSVRARAIKDGLRR 344 Query: 619 PRNICAVEA 627 ++ +E Sbjct: 345 LQDQAFLER 353 >gi|293401160|ref|ZP_06645304.1| tail tape measure protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305286|gb|EFE46531.1| tail tape measure protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 1061 Score = 39.0 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 3/74 (4%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + +++L++L+ ++ Q K I +YDAL+R L + Sbjct: 67 ETKEKLATLKTAAEQANE---QLQKGEITQEQYDALQREIVETEAELKRLEQQASTTNAT 123 Query: 76 NKIGGEMNLSLFKV 89 G++ L V Sbjct: 124 LTKIGDVGSKLESV 137 >gi|222640898|gb|EEE69030.1| hypothetical protein OsJ_28011 [Oryza sativa Japonica Group] Length = 334 Score = 39.0 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 9/22 (40%), Positives = 12/22 (54%) Query: 36 YQYSKPIILDSEYDALKRRCDA 57 Y PI+ D+E+D LK R Sbjct: 155 YVAGNPIMTDAEFDELKLRLRK 176 >gi|218201488|gb|EEC83915.1| hypothetical protein OsI_29970 [Oryza sativa Indica Group] Length = 326 Score = 39.0 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 9/22 (40%), Positives = 12/22 (54%) Query: 36 YQYSKPIILDSEYDALKRRCDA 57 Y PI+ D+E+D LK R Sbjct: 147 YVAGNPIMTDAEFDELKLRLRK 168 >gi|215687350|dbj|BAG91915.1| unnamed protein product [Oryza sativa Japonica Group] gi|215692659|dbj|BAG88079.1| unnamed protein product [Oryza sativa Japonica Group] gi|215737686|dbj|BAG96816.1| unnamed protein product [Oryza sativa Japonica Group] Length = 177 Score = 39.0 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 9/22 (40%), Positives = 12/22 (54%) Query: 36 YQYSKPIILDSEYDALKRRCDA 57 Y PI+ D+E+D LK R Sbjct: 3 YVAGNPIMTDAEFDELKLRLRK 24 >gi|115477403|ref|NP_001062297.1| Os08g0526300 [Oryza sativa Japonica Group] gi|42407629|dbj|BAD08743.1| unknown protein [Oryza sativa Japonica Group] gi|42761407|dbj|BAD11572.1| unknown protein [Oryza sativa Japonica Group] gi|113624266|dbj|BAF24211.1| Os08g0526300 [Oryza sativa Japonica Group] Length = 329 Score = 39.0 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 9/22 (40%), Positives = 12/22 (54%) Query: 36 YQYSKPIILDSEYDALKRRCDA 57 Y PI+ D+E+D LK R Sbjct: 155 YVAGNPIMTDAEFDELKLRLRK 176 >gi|309810827|ref|ZP_07704628.1| conserved hypothetical protein [Dermacoccus sp. Ellin185] gi|308435133|gb|EFP58964.1| conserved hypothetical protein [Dermacoccus sp. Ellin185] Length = 359 Score = 39.0 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 10/69 (14%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 + + A I L ++ S Q+ D+ L+ V VG+ A+A+ E Sbjct: 299 VPRLPAAIIDRLVDHFGSLQSLLAA----------DFDDLLTVDGVGESRARAVREGLSR 348 Query: 619 PRNICAVEA 627 +E Sbjct: 349 LAESSILER 357 >gi|118431455|ref|NP_147940.2| repair endonuclease XPF [Aeropyrum pernix K1] gi|116062779|dbj|BAA80433.2| repair endonuclease XPF [Aeropyrum pernix K1] Length = 248 Score = 39.0 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 10/63 (15%) Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + +G A + + + S + F + +V +G+ A+ Sbjct: 163 WQLYILQSFPGIGRRTAERILERFGSLERFFTASKA----------EISKVEGIGEKRAE 212 Query: 611 AIV 613 I Sbjct: 213 EIK 215 >gi|61680877|pdb|2BGW|A Chain A, Xpf From Aeropyrum Pernix, Complex With Dna gi|61680878|pdb|2BGW|B Chain B, Xpf From Aeropyrum Pernix, Complex With Dna Length = 219 Score = 39.0 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 10/63 (15%) Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + +G A + + + S + F + +V +G+ A+ Sbjct: 159 WQLYILQSFPGIGRRTAERILERFGSLERFFTASKA----------EISKVEGIGEKRAE 208 Query: 611 AIV 613 I Sbjct: 209 EIK 211 >gi|61680885|pdb|2BHN|A Chain A, Xpf From Aeropyrum Pernix gi|61680886|pdb|2BHN|B Chain B, Xpf From Aeropyrum Pernix gi|61680887|pdb|2BHN|C Chain C, Xpf From Aeropyrum Pernix gi|61680888|pdb|2BHN|D Chain D, Xpf From Aeropyrum Pernix Length = 214 Score = 39.0 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 10/63 (15%) Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + +G A + + + S + F + +V +G+ A+ Sbjct: 152 WQLYILQSFPGIGRRTAERILERFGSLERFFTASKA----------EISKVEGIGEKRAE 201 Query: 611 AIV 613 I Sbjct: 202 EIK 204 >gi|66475596|ref|XP_627614.1| ERCC1 excision repair 1; C-terminal HhH domain [Cryptosporidium parvum Iowa II] gi|46229292|gb|EAK90141.1| ERCC1 excision repair 1; C-terminal HhH domain [Cryptosporidium parvum Iowa II] Length = 240 Score = 39.0 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 10/62 (16%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 + + + +L K++ S L ++ +G I A+ I E + Sbjct: 185 SLPRINKTDSENLLKHFGSISKVVNASE----------EELSKIQGIGPIKAKVISEIFS 234 Query: 618 NP 619 Sbjct: 235 TE 236 >gi|326333918|ref|ZP_08200149.1| competence protein CelA [Nocardioidaceae bacterium Broad-1] gi|325948279|gb|EGD40388.1| competence protein CelA [Nocardioidaceae bacterium Broad-1] Length = 297 Score = 39.0 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 20/40 (50%) Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 N L +P VG + AQAI+++ +V+ LL+ Sbjct: 240 NAASMEELETLPGVGPVTAQAIIDWRTTNGAFTSVDELLE 279 >gi|121705758|ref|XP_001271142.1| RNA Polymerase II CTD phosphatase Fcp1, putative [Aspergillus clavatus NRRL 1] gi|119399288|gb|EAW09716.1| RNA Polymerase II CTD phosphatase Fcp1, putative [Aspergillus clavatus NRRL 1] Length = 826 Score = 39.0 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 10/93 (10%) Query: 649 NKKLVFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL- 704 LVF+G L + GAV+S ++RKT ++ G N +K+ +A + Sbjct: 514 GVVLVFSGVLPLGTDTQNADISLWTKSFGAVISTKINRKTTHLVAGRNRTAKVREATRYP 573 Query: 705 GVKIMNEEQFL------FLLQQYNTTLRIHDDD 731 +KI+ + L L + L +H DD Sbjct: 574 NIKIVTTQWLLDTLTQWKRLDEEPYLLPVHPDD 606 >gi|317486174|ref|ZP_07945013.1| excinuclease ABC [Bilophila wadsworthia 3_1_6] gi|316922565|gb|EFV43812.1| excinuclease ABC [Bilophila wadsworthia 3_1_6] Length = 671 Score = 39.0 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 10/57 (17%) Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 L I VG AR L ++ + L +P +G A+A+ Sbjct: 616 LLRIPGVGKATARLLWDHFKALDAIIAATPA----------QLAAIPGIGPRKAEAL 662 >gi|288917081|ref|ZP_06411451.1| excinuclease ABC, C subunit [Frankia sp. EUN1f] gi|288351450|gb|EFC85657.1| excinuclease ABC, C subunit [Frankia sp. EUN1f] Length = 758 Score = 39.0 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 10/60 (16%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 G+ +G ++L + + S + +VP +G A+AIV Sbjct: 643 GVPGLGDTRRKALLRQFGSVAKVRAAT----------AEEIAQVPGIGPRTAEAIVAALA 692 >gi|148270820|ref|YP_001245280.1| helix-hairpin-helix repeat-containing competence protein ComEA [Thermotoga petrophila RKU-1] gi|147736364|gb|ABQ47704.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermotoga petrophila RKU-1] Length = 181 Score = 39.0 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 22/56 (39%) Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 N L+ +P +G + AQ I+++ ++ +VE L EK Sbjct: 48 DLNTASLEDLMSIPGIGPVKAQRIIDYRESHGGFSSVEELKNVSGIGEKTLEKISG 103 >gi|1709741|sp|Q11208|PARP_SARPE RecName: Full=Poly [ADP-ribose] polymerase; Short=PARP; AltName: Full=NAD(+) ADP-ribosyltransferase; Short=ADPRT; AltName: Full=Poly[ADP-ribose] synthase gi|538248|dbj|BAA03943.1| poly(ADP-ribose) polymerase [Sarcophaga peregrina] Length = 996 Score = 39.0 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 36/62 (58%), Gaps = 7/62 (11%) Query: 667 QEYVTQLGAVVSAILSRKTDIII-----VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 ++ +++LG VS ++ KT +++ V + S+++KA+ LG+ ++ E +L ++Q Sbjct: 405 KDRISKLGGTVSTKITEKTTVVLSTPEEV-ERMSSRMKKAKTLGLHVI-PEDYLEAVEQN 462 Query: 722 NT 723 Sbjct: 463 GA 464 >gi|116668758|ref|YP_829691.1| DNA integrity scanning protein DisA [Arthrobacter sp. FB24] gi|116608867|gb|ABK01591.1| protein of unknown function DUF147 [Arthrobacter sp. FB24] Length = 358 Score = 39.0 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 10/72 (13%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 G++ V +A L ++ Q L+ V +GD A+ + E Sbjct: 297 GLKAVPKAVADRLVDHFGGLQYLMAAT----------IDDLMTVDGIGDQRARTVREGLS 346 Query: 618 NPRNICAVEALL 629 ++ L Sbjct: 347 RMAEASLLDRFL 358 >gi|170046595|ref|XP_001850844.1| microcephalin [Culex quinquefasciatus] gi|167869331|gb|EDS32714.1| microcephalin [Culex quinquefasciatus] Length = 953 Score = 39.0 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 25/47 (53%) Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 ++ V LGA V+ L + T +I D S +KA+++ + +++ Sbjct: 221 DGIKDVVASLGAKVNDKLYKDTTHVIFKDGLMSTYQKAKKMNIPVVS 267 >gi|149634118|ref|XP_001506606.1| PREDICTED: similar to laminin, beta 2 (laminin S) [Ornithorhynchus anatinus] Length = 1485 Score = 39.0 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 50/521 (9%), Positives = 104/521 (19%), Gaps = 66/521 (12%) Query: 157 GHSGED---VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND------EMIA 207 G G AC L ++ R + S+ D Sbjct: 506 GTYGFGPSGCRACQCNPEGTLSSLCDSVSGQCPCRPGAFGSRCDHCQPGHWGFPRCRPCH 565 Query: 208 VGRKPYAN-PRNAASGILRRLNPTDITRYLNFFVHG-----LGKTSEIFAKGQYEMLQKM 261 R A R D +G G + ++ Sbjct: 566 CNGHAEECDQRTGACQACRDHTAGDRCDRCVAGFYGNPVLTSGGHCRPCPCPEGPGSRRH 625 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 + Q + + + + Sbjct: 626 FAASCHQDGHSHQVICHCQPGHTGPRCEECAPGHYGNPSQAGGRCQPCQCSNNIDPTDPE 685 Query: 322 PRWMISHKFAEKQASTRLLDI-DIQIGRTGIL-TPVARLEPVNIGGALITNATLHNEDYI 379 + + + + G G R N G + +++ Sbjct: 686 ACDRRTGQCQRCLYHSEGPHCAYCRPGYYGQAAHHSCRRCSCNFLGT--ERSQCPSQEEC 743 Query: 380 KGLDASGK-----VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 +SG+ ++G R +G+ + P F+ C Sbjct: 744 HCDQSSGQCPCLPNIQGQNCDRCAPNFWNLASGQGCQPCDCHPSHSVSPSCNEFTGQCHC 803 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 + + +C H + G+ + D Sbjct: 804 RAGFGGRACTDCQENHWGDPSQQCRACDCDPRGIETLQCHRTTGHCNCRPGVSGVRCDQC 863 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + F I P G D V +L + E + Sbjct: 864 ARGFSGTFPICHPCHQCF----------------GDWDRVVQDLATRTRHLGQRAQE--L 905 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV-----PLVGDIIA 609 G R L + + Q N L+++ +G+ Sbjct: 906 QQSGAIGAFERNFRLLEEKLGTVQGIVSARNTTATA----ITQLMKITEELRSGIGEAT- 960 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650 + L +E++ + + N + + Sbjct: 961 -------------ERLNQLERELTVAQDENF-NSNHALSGL 987 >gi|30519993|ref|NP_848758.1| Fanconi anemia-associated protein of 24 kDa [Mus musculus] gi|81913153|sp|Q8BHL6|FAP24_MOUSE RecName: Full=Fanconi anemia-associated protein of 24 kDa gi|26327417|dbj|BAC27452.1| unnamed protein product [Mus musculus] gi|26333665|dbj|BAC30550.1| unnamed protein product [Mus musculus] gi|26349711|dbj|BAC38495.1| unnamed protein product [Mus musculus] gi|66794596|gb|AAH96687.1| RIKEN cDNA C230052I12 gene [Mus musculus] gi|148671072|gb|EDL03019.1| RIKEN cDNA C230052I12 [Mus musculus] Length = 221 Score = 39.0 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 42/148 (28%), Gaps = 12/148 (8%) Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 S I Q + +F + + + + + + + S I + Sbjct: 83 SSHLQGIIIVEKTQMSEQYFPAVQKFTVLDLGMVLLPVASQSEASCLIIHLVQEQTREPS 142 Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 N + + L I VG A L + + S Q +N Sbjct: 143 KNPFLRKKRSMLSELSLVQTVQQIPGVGKVKAPLLLQKFPSIQQL----------SNASV 192 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNIC 623 L V VG AQ I F+ P+ Sbjct: 193 QELEEV--VGPAAAQQIHTFFTQPKRQQ 218 >gi|288560937|ref|YP_003424423.1| DEAD/DEAH box helicase domain-containing protein [Methanobrevibacter ruminantium M1] gi|288543647|gb|ADC47531.1| DEAD/DEAH box helicase domain-containing protein [Methanobrevibacter ruminantium M1] Length = 690 Score = 39.0 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 12/59 (20%) Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +G++ +G + AR+L + ++ N L +V +G +A++I F Sbjct: 640 IGVKRLGRKRARALVNTFG--EDLRPVSEN----------ELQKVDGIGPKLAKSIRNF 686 >gi|158291429|ref|XP_312938.3| AGAP003230-PA [Anopheles gambiae str. PEST] gi|157017770|gb|EAA08394.3| AGAP003230-PA [Anopheles gambiae str. PEST] Length = 1000 Score = 39.0 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 8/93 (8%) Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 KE K + + + V G + + + + +LG V ++ T I Sbjct: 370 KKEEELPSEPKIKREKPPLYDMEFVILGKTAT-PKDQLKLKIQKLGGKVVTKIASHTAAI 428 Query: 689 I-----VGDNPGSKLEKAQQLGVKIMNEEQFLF 716 I V + GS++ +A++L ++++ E FL Sbjct: 429 ISTPEEV-ERLGSRMAEAKELQIQVV-PEDFLE 459 >gi|147920338|ref|YP_685889.1| Hef nuclease [uncultured methanogenic archaeon RC-I] gi|110621285|emb|CAJ36563.1| putative type III restriction-modification system, restriction subunit [uncultured methanogenic archaeon RC-I] Length = 792 Score = 39.0 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 10/56 (17%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 I VG IA++L +++ S + A+ L V VG A I E Sbjct: 737 ISEVGPVIAKNLLRHFGSVKKIAEA----------SAEELTAVERVGPKTAARIRE 782 >gi|325961775|ref|YP_004239681.1| nucleic-acid-binding protein (contains the HHH domain) [Arthrobacter phenanthrenivorans Sphe3] gi|323467862|gb|ADX71547.1| putative nucleic-acid-binding protein (contains the HHH domain) [Arthrobacter phenanthrenivorans Sphe3] Length = 358 Score = 39.0 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 10/72 (13%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 G++ V +A L ++ Q L+ V +GD A+ + E Sbjct: 297 GLKAVPKAVADRLVDHFGGLQFLMAAT----------IDDLMTVDGIGDQRARTVREGLS 346 Query: 618 NPRNICAVEALL 629 ++ L Sbjct: 347 RMAEASLLDRFL 358 >gi|313764601|gb|EFS35965.1| comEA protein [Propionibacterium acnes HL013PA1] gi|313792291|gb|EFS40392.1| comEA protein [Propionibacterium acnes HL110PA1] gi|313801760|gb|EFS42994.1| comEA protein [Propionibacterium acnes HL110PA2] gi|313816138|gb|EFS53852.1| comEA protein [Propionibacterium acnes HL059PA1] gi|313827959|gb|EFS65673.1| comEA protein [Propionibacterium acnes HL063PA2] gi|313838590|gb|EFS76304.1| comEA protein [Propionibacterium acnes HL086PA1] gi|314915595|gb|EFS79426.1| comEA protein [Propionibacterium acnes HL005PA4] gi|314918449|gb|EFS82280.1| comEA protein [Propionibacterium acnes HL050PA1] gi|314919938|gb|EFS83769.1| comEA protein [Propionibacterium acnes HL050PA3] gi|314931952|gb|EFS95783.1| comEA protein [Propionibacterium acnes HL067PA1] gi|314955819|gb|EFT00219.1| comEA protein [Propionibacterium acnes HL027PA1] gi|314958301|gb|EFT02404.1| comEA protein [Propionibacterium acnes HL002PA1] gi|314962950|gb|EFT07050.1| comEA protein [Propionibacterium acnes HL082PA1] gi|314967976|gb|EFT12075.1| comEA protein [Propionibacterium acnes HL037PA1] gi|315077593|gb|EFT49649.1| comEA protein [Propionibacterium acnes HL053PA2] gi|315098392|gb|EFT70368.1| comEA protein [Propionibacterium acnes HL059PA2] gi|315101252|gb|EFT73228.1| comEA protein [Propionibacterium acnes HL046PA1] gi|315108476|gb|EFT80452.1| comEA protein [Propionibacterium acnes HL030PA2] gi|327450924|gb|EGE97578.1| comEA protein [Propionibacterium acnes HL087PA3] gi|327452997|gb|EGE99651.1| comEA protein [Propionibacterium acnes HL092PA1] gi|327453726|gb|EGF00381.1| comEA protein [Propionibacterium acnes HL083PA2] gi|328754346|gb|EGF67962.1| comEA protein [Propionibacterium acnes HL087PA1] gi|328754924|gb|EGF68540.1| comEA protein [Propionibacterium acnes HL025PA2] Length = 283 Score = 39.0 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 21/61 (34%) Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 + N + L + VG ++A I+ + Q +V+ L + EK Sbjct: 220 KAPVNLNTANQSELETIDGVGPVMAGKIMAWRQEHGQFASVDQLREISGIGAKTFEKIKP 279 Query: 645 S 645 Sbjct: 280 H 280 >gi|220911123|ref|YP_002486432.1| DNA integrity scanning protein DisA [Arthrobacter chlorophenolicus A6] gi|219858001|gb|ACL38343.1| protein of unknown function DUF147 [Arthrobacter chlorophenolicus A6] Length = 358 Score = 39.0 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 10/72 (13%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 G++ V +A L ++ Q L+ V +GD A+ + E Sbjct: 297 GLKAVPKAVADRLVDHFGGLQFLMAAT----------IDDLMTVDGIGDQRARTVREGLS 346 Query: 618 NPRNICAVEALL 629 ++ L Sbjct: 347 RMAEASLLDRFL 358 >gi|327358124|gb|EGE86981.1| RNA Polymerase II CTD phosphatase Fcp1 [Ajellomyces dermatitidis ATCC 18188] Length = 839 Score = 39.0 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 10/89 (11%) Query: 653 VFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKI 708 VF+G L + GA +S +S +T ++ G N +K+ +A + +KI Sbjct: 429 VFSGVLPLGTDTQNADISLWAKSFGAAISTKISSRTTHLVAGRNRTAKVREATRYPNIKI 488 Query: 709 MNEEQFL------FLLQQYNTTLRIHDDD 731 + + L + + + +H +D Sbjct: 489 VTVQWLLDSITQWKRIDEEPYLVPVHPED 517 >gi|239606973|gb|EEQ83960.1| RNA Polymerase II CTD phosphatase Fcp1 [Ajellomyces dermatitidis ER-3] Length = 901 Score = 39.0 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 10/89 (11%) Query: 653 VFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKI 708 VF+G L + GA +S +S +T ++ G N +K+ +A + +KI Sbjct: 501 VFSGVLPLGTDTQNADISLWAKSFGAAISTKISSRTTHLVAGRNRTAKVREATRYPNIKI 560 Query: 709 MNEEQFL------FLLQQYNTTLRIHDDD 731 + + L + + + +H +D Sbjct: 561 VTVQWLLDSITQWKRIDEEPYLVPVHPED 589 >gi|256825551|ref|YP_003149511.1| DNA uptake protein [Kytococcus sedentarius DSM 20547] gi|256688944|gb|ACV06746.1| DNA uptake protein [Kytococcus sedentarius DSM 20547] Length = 305 Score = 39.0 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 21/43 (48%) Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 + N D +L +P VG + A+ I+ + + V+ L++ Sbjct: 244 LDLNTADQAALEELPGVGPVTAEHILAWRKENGQFTTVDELME 286 >gi|327296037|ref|XP_003232713.1| RNA Polymerase II CTD phosphatase [Trichophyton rubrum CBS 118892] gi|326465024|gb|EGD90477.1| RNA Polymerase II CTD phosphatase [Trichophyton rubrum CBS 118892] Length = 836 Score = 39.0 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 10/89 (11%) Query: 653 VFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKI 708 VF+G L + GA +++ ++ +T ++ G N +K+ +A + +KI Sbjct: 517 VFSGVLPLGTDTQNADISLWAKSFGATITSKINSRTTHLVAGRNRTAKVREATRYPKIKI 576 Query: 709 MNEEQFL------FLLQQYNTTLRIHDDD 731 + + L L + + +H DD Sbjct: 577 VTVQWLLDCMIQWKHLDEEPYLVPVHPDD 605 >gi|188584801|ref|YP_001916346.1| protein of unknown function DUF147 [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349488|gb|ACB83758.1| protein of unknown function DUF147 [Natranaerobius thermophilus JW/NM-WN-LF] Length = 363 Score = 39.0 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 20/51 (39%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 +N + ++ N L V +G+I A+ I + + R ++ Sbjct: 311 VENVVERFGDLRGILNASIEELDDVEGIGEIRARVIKDGLRRIREQALIDR 361 >gi|218961104|ref|YP_001740879.1| Excinuclease ABC, C subunit [Candidatus Cloacamonas acidaminovorans] gi|167729761|emb|CAO80673.1| Excinuclease ABC, C subunit [Candidatus Cloacamonas acidaminovorans] Length = 601 Score = 39.0 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 10/60 (16%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I +G + L K S +N A + +L ++ +G IA+ I + Sbjct: 550 SISGIGEKNKFLLLKELGSVENIANA----------NRETLSKIKGIGPKIAEKIYNHFH 599 >gi|304316131|ref|YP_003851276.1| excinuclease ABC subunit C [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777633|gb|ADL68192.1| excinuclease ABC, C subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 617 Score = 39.0 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 6/45 (13%), Positives = 17/45 (37%) Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 + + I N L +V + + A A+ +++++ Sbjct: 573 KRMKALFEAFKTIDDIKNATVEELKKVEGMNEKAANAVYDYFRSD 617 >gi|84488930|ref|YP_447162.1| helicase [Methanosphaera stadtmanae DSM 3091] gi|84372249|gb|ABC56519.1| predicted helicase [Methanosphaera stadtmanae DSM 3091] Length = 694 Score = 39.0 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 12/61 (19%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 G++ +G + AR + + + N+ L R+ +G++ A+ I+EFY Sbjct: 644 GVKRLGRQRARKVVDIFGN------------NLNDVKITELTRIDGIGEVTARNIIEFYN 691 Query: 618 N 618 N Sbjct: 692 N 692 >gi|28211670|ref|NP_782614.1| come operon protein 1 [Clostridium tetani E88] gi|28204112|gb|AAO36551.1| come operon protein 1 [Clostridium tetani E88] Length = 188 Score = 39.0 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 + I N L +P +GD+ A+ IV + + ++E +K + + + + Sbjct: 124 KDKINLNKASKEELKSIPGIGDVTAEKIVNYRKENNGFNSIEE-IKNIDRIGEKTFEKIK 182 Query: 645 SEIE 648 +++ Sbjct: 183 DKLD 186 >gi|325124552|gb|ADY84075.1| competence protein ComEA [Acinetobacter calcoaceticus PHEA-2] Length = 68 Score = 39.0 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%) Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 + + I N + L ++ +G+ AQAIVE+ Q ++ E Sbjct: 1 MTDSSGQIHLNQANIDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFE 60 Query: 641 KNVS 644 KN S Sbjct: 61 KNKS 64 >gi|323704240|ref|ZP_08115819.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323536306|gb|EGB26078.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 205 Score = 39.0 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRH 639 N I N L +P +G++ AQ I++F + N +E ++ + P + Sbjct: 138 NAPNGKININTATKEELDTLPGIGEVTAQRIIDFREQHGNFQRIEDIMNVSRIGPKLFEQ 197 Query: 640 EKNV 643 K+ Sbjct: 198 IKDK 201 >gi|313837329|gb|EFS75043.1| comEA protein [Propionibacterium acnes HL037PA2] gi|314927997|gb|EFS91828.1| comEA protein [Propionibacterium acnes HL044PA1] gi|314971713|gb|EFT15811.1| comEA protein [Propionibacterium acnes HL037PA3] gi|328907123|gb|EGG26889.1| comEA protein [Propionibacterium sp. P08] Length = 280 Score = 39.0 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 21/61 (34%) Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 + N + L + VG ++A I+ + Q +V+ L + EK Sbjct: 217 KAQVNLNTANQSELETIDGVGPVMAGKIMAWRQEHGQFASVDQLREISGIGAKTFEKIKP 276 Query: 645 S 645 Sbjct: 277 H 277 >gi|330924956|ref|XP_003300850.1| hypothetical protein PTT_12211 [Pyrenophora teres f. teres 0-1] gi|311324811|gb|EFQ91054.1| hypothetical protein PTT_12211 [Pyrenophora teres f. teres 0-1] Length = 838 Score = 39.0 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 8/92 (8%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 + TG QR QE V G L++ +I G K E A G Sbjct: 110 TFFGLNICLTGFDNPDQRRNIQEKVDANGGDYHGDLTKSVTHLIAATPSGKKYEHALNWG 169 Query: 706 VKIMNEEQFLFLLQQ--------YNTTLRIHD 729 +KI+ E L++ YN TL I + Sbjct: 170 IKIVALEWLEQSLERGMVLDETCYNPTLPIEE 201 >gi|238917912|ref|YP_002931429.1| excinuclease ABC subunit C [Eubacterium eligens ATCC 27750] gi|259710340|sp|C4Z4U3|UVRC_EUBE2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|238873272|gb|ACR72982.1| excinuclease ABC subunit C [Eubacterium eligens ATCC 27750] Length = 612 Score = 39.0 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 10/60 (16%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I +G ++L K++L + Q L++ + + +A+ I +F+ Sbjct: 563 SIEGIGPVRRKALMKHFLDIEKIRQA----------SVDELMKADGITENVAENIYKFFH 612 >gi|229817619|ref|ZP_04447901.1| hypothetical protein BIFANG_02887 [Bifidobacterium angulatum DSM 20098] gi|229785408|gb|EEP21522.1| hypothetical protein BIFANG_02887 [Bifidobacterium angulatum DSM 20098] Length = 217 Score = 39.0 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 5/82 (6%) Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 + + S A+ + + Q ++ N L + +G + A+ I+++ Q Sbjct: 134 QSQSDSTSASQAERFST-----QSDGGLVNLNTATLEELDSISGIGPVTARKILDYRQRI 188 Query: 620 RNICAVEALLKEVSPSIGRHEK 641 +V+ LL+ + EK Sbjct: 189 GMFSSVDQLLEVSGIGVKTLEK 210 >gi|312116178|ref|YP_004013774.1| excinuclease ABC, C subunit [Rhodomicrobium vannielii ATCC 17100] gi|311221307|gb|ADP72675.1| excinuclease ABC, C subunit [Rhodomicrobium vannielii ATCC 17100] Length = 689 Score = 39.0 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 10/85 (11%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ + GI +G R+L K++ S A + Sbjct: 615 HRFAIGSHRAKRKKAMTENELDGIPGIGPTRKRALLKHFGS----------AKAVSRAGL 664 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPR 620 L V + +AQ I ++Y + + Sbjct: 665 SDLRAVDGISAAMAQQIYDWYNDRK 689 >gi|281413115|ref|YP_003347194.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermotoga naphthophila RKU-10] gi|281374218|gb|ADA67780.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermotoga naphthophila RKU-10] Length = 181 Score = 39.0 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 19/75 (25%) Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648 N L+ +P +G + AQ I+++ S KNVS Sbjct: 48 ELNTASLEDLMSIPGIGPVKAQRIIDY------------RESHGGFSSVEELKNVSGI-- 93 Query: 649 NKKLVFTGTLQKIQR 663 +K TL+KI R Sbjct: 94 GEK-----TLEKISR 103 >gi|254456104|ref|ZP_05069533.1| putative dehydrogenase [Candidatus Pelagibacter sp. HTCC7211] gi|207083106|gb|EDZ60532.1| putative dehydrogenase [Candidatus Pelagibacter sp. HTCC7211] Length = 342 Score = 39.0 bits (89), Expect = 3.2, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 9/44 (20%) Query: 644 SSEIENKKLVF--TGTL-QKIQRHKAQEYVTQLGAVVSAILSRK 684 S+ I K +V TG+L + A+ ++ LGA V +++K Sbjct: 158 SNPIAGKTVVVVGTGSLGSSM----AK-HIKSLGANVIG-VNKK 195 >gi|169600911|ref|XP_001793878.1| hypothetical protein SNOG_03310 [Phaeosphaeria nodorum SN15] gi|160705543|gb|EAT90041.2| hypothetical protein SNOG_03310 [Phaeosphaeria nodorum SN15] Length = 810 Score = 39.0 bits (89), Expect = 3.2, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 17/98 (17%) Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTG---------TLQKIQRHKAQEYVTQLGAV 676 AL + + ++ +VF+G T ++ GA Sbjct: 507 RALSDIIPDVAEIMPRIKEEVLDGVVVVFSGIIPLGVDVQT------SDYALWIRSFGAE 560 Query: 677 VSAILSRKTDIIIVGDN-PGSKLEKAQQLG-VKIMNEE 712 V+ ++R+T +I + +K+++A + +KI+N E Sbjct: 561 VTTSVNRRTTHVIANPDRKTTKVKQAARYQHIKIVNPE 598 >gi|328773391|gb|EGF83428.1| hypothetical protein BATDEDRAFT_36503 [Batrachochytrium dendrobatidis JAM81] Length = 257 Score = 39.0 bits (89), Expect = 3.2, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 656 GTLQKIQR-HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 G+L K E + ++GA + L+ ++ G K E+A +L + I+ +F Sbjct: 178 GSLSKDSDVDTLIELLDRIGAKYTDDLTSDNTHLVCTVPKGPKYERALELNIPIVTP-EF 236 Query: 715 LF 716 L Sbjct: 237 LK 238 >gi|293398290|ref|ZP_06642482.1| DNA transport competence protein [Neisseria gonorrhoeae F62] gi|291611296|gb|EFF40379.1| DNA transport competence protein [Neisseria gonorrhoeae F62] Length = 141 Score = 39.0 bits (89), Expect = 3.2, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 20/62 (32%) Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 + N L +P +G A+AI E+ +V+ L+K K Sbjct: 59 SLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLIKVKGIGPAVLAKLK 118 Query: 644 SS 645 Sbjct: 119 DQ 120 >gi|260439692|ref|ZP_05793508.1| ComEA-related protein [Neisseria gonorrhoeae DGI2] gi|291042936|ref|ZP_06568675.1| DNA transport competence protein [Neisseria gonorrhoeae DGI2] gi|291013143|gb|EFE05111.1| DNA transport competence protein [Neisseria gonorrhoeae DGI2] gi|317164625|gb|ADV08166.1| ComE1 [Neisseria gonorrhoeae TCDC-NG08107] gi|317164978|gb|ADV08519.1| ComE1 [Neisseria gonorrhoeae TCDC-NG08107] gi|317165078|gb|ADV08619.1| ComE1 [Neisseria gonorrhoeae TCDC-NG08107] gi|317165312|gb|ADV08853.1| ComE1 [Neisseria gonorrhoeae TCDC-NG08107] Length = 131 Score = 39.0 bits (89), Expect = 3.2, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 20/62 (32%) Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 + N L +P +G A+AI E+ +V+ L+K K Sbjct: 49 SLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLIKVKGIGPAVLAKLK 108 Query: 644 SS 645 Sbjct: 109 DQ 110 >gi|59801540|ref|YP_208252.1| ComE1 [Neisseria gonorrhoeae FA 1090] gi|240122228|ref|ZP_04735190.1| ComE1 [Neisseria gonorrhoeae PID24-1] gi|10505052|gb|AAG18334.1|AF268314_1 ComE [Neisseria gonorrhoeae] gi|10505056|gb|AAG18336.1|AF268315_1 ComE [Neisseria gonorrhoeae] gi|10505059|gb|AAG18337.1|AF268316_1 ComE [Neisseria gonorrhoeae] gi|10505061|gb|AAG18338.1|AF268317_1 ComE [Neisseria gonorrhoeae] gi|59718435|gb|AAW89840.1| DNA-binding competence protein 1 [Neisseria gonorrhoeae FA 1090] Length = 99 Score = 39.0 bits (89), Expect = 3.2, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 20/62 (32%) Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 + N L +P +G A+AI E+ +V+ L+K K Sbjct: 17 SLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLIKVKGIGPAVLAKLK 76 Query: 644 SS 645 Sbjct: 77 DQ 78 >gi|326475449|gb|EGD99458.1| RNA Polymerase II CTD phosphatase [Trichophyton tonsurans CBS 112818] Length = 866 Score = 39.0 bits (89), Expect = 3.3, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 10/89 (11%) Query: 653 VFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKI 708 VF+G L + GA +++ ++ +T ++ G N +K+ +A + +KI Sbjct: 547 VFSGVLPLGTDTQNADISLWAKSFGATITSKINSRTTHLVAGRNRTAKVREATRYTKIKI 606 Query: 709 MNEEQFL------FLLQQYNTTLRIHDDD 731 + + L L + + +H DD Sbjct: 607 VTVQWLLDCMIQWKHLDEEPYLVPVHPDD 635 >gi|311029021|ref|ZP_07707111.1| DNA integrity scanning protein DisA [Bacillus sp. m3-13] Length = 357 Score = 39.0 bits (89), Expect = 3.3, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 20/51 (39%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 +N N+ N L V +G++ A+ I E + ++ ++ Sbjct: 305 IENLVCRFWNLKQILNATVEELDDVDGIGEVRARKIKEGLKRIQDQLQIDR 355 >gi|219683758|ref|YP_002470141.1| DNA-binding protein [Bifidobacterium animalis subsp. lactis AD011] gi|219621408|gb|ACL29565.1| putative DNA-binding protein [Bifidobacterium animalis subsp. lactis AD011] Length = 236 Score = 39.0 bits (89), Expect = 3.3, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 25/67 (37%) Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634 S + + ++ N D L + +G + A I+E+ +++ L+ Sbjct: 162 PSPSASDNKQDTLVNINTADEAQLQEIKGIGPVTAARIIEYRTQHGAFASLDDLVNVPGI 221 Query: 635 SIGRHEK 641 + EK Sbjct: 222 GMKTVEK 228 >gi|183601709|ref|ZP_02963079.1| putative DNA-binding protein [Bifidobacterium animalis subsp. lactis HN019] gi|241190793|ref|YP_002968187.1| putative DNA-binding protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196199|ref|YP_002969754.1| putative DNA-binding protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219315|gb|EDT89956.1| putative DNA-binding protein [Bifidobacterium animalis subsp. lactis HN019] gi|240249185|gb|ACS46125.1| putative DNA-binding protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250753|gb|ACS47692.1| putative DNA-binding protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178529|gb|ADC85775.1| COME operon protein 1 [Bifidobacterium animalis subsp. lactis BB-12] gi|295793782|gb|ADG33317.1| putative DNA-binding protein [Bifidobacterium animalis subsp. lactis V9] Length = 258 Score = 39.0 bits (89), Expect = 3.3, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 25/67 (37%) Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634 S + + ++ N D L + +G + A I+E+ +++ L+ Sbjct: 184 PSPSASDNKQDTLVNINTADEAQLQEIKGIGPVTAARIIEYRTQHGAFASLDDLVNVPGI 243 Query: 635 SIGRHEK 641 + EK Sbjct: 244 GMKTVEK 250 >gi|260907599|ref|ZP_05915921.1| DNA polymerase III, epsilon subunit [Brevibacterium linens BL2] Length = 65 Score = 39.0 bits (89), Expect = 3.3, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%) Query: 672 QLGAVVSAILSRKTDIIIVGDN---PGSKLEKAQQLGVKIMNEEQFLFLL 718 Q G VV +++K D+++ D G K KA++ G+ I++E Q L Sbjct: 3 QAGFVVHPAVTKKVDLVMAEDEDSLSG-KARKARKYGIPILSEVQMENYL 51 >gi|188024469|ref|ZP_02997117.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188018579|gb|EDU56619.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 7 str. ATCC 27819] Length = 1442 Score = 39.0 bits (89), Expect = 3.3, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%) Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----SYQNFAQEINNIIAHNNDDW 595 + +K R+ + L ++ + + LA+ + S + I NN Sbjct: 1319 EQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQNNAII 1378 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 + + +G+ +A +I+E +N + +E L Sbjct: 1379 PPFVAIQGLGETVANSIIEA-RNQKAFSTIEDLKN 1412 >gi|189199660|ref|XP_001936167.1| subunit of DNA polymerase II [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187983266|gb|EDU48754.1| subunit of DNA polymerase II [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 811 Score = 39.0 bits (89), Expect = 3.3, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 8/92 (8%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 K+ TG QR Q+ V G L++ +I G K E A G Sbjct: 110 TFSGLKICLTGFDNPDQRKSIQDKVDANGGEYHGDLTKSVTHLIAATPSGKKYEHALNWG 169 Query: 706 VKIMNEEQFLFLLQQ--------YNTTLRIHD 729 +KI+ E L++ YN TL + + Sbjct: 170 MKIVALEWLEQSLERGMVLEETYYNPTLPVEE 201 >gi|171920838|ref|ZP_02932008.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|171903036|gb|EDT49325.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 13 str. ATCC 33698] Length = 1442 Score = 39.0 bits (89), Expect = 3.3, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%) Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----SYQNFAQEINNIIAHNNDDW 595 + +K R+ + L ++ + + LA+ + S + I NN Sbjct: 1319 EQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQNNAII 1378 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 + + +G+ +A +I+E +N + +E L Sbjct: 1379 PPFVAIQGLGETVANSIIEA-RNQKAFSTIEDLKN 1412 >gi|188524415|ref|ZP_03004436.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273773|ref|ZP_03206307.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|195659873|gb|EDX53253.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249528|gb|EDY74310.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 4 str. ATCC 27816] Length = 1442 Score = 39.0 bits (89), Expect = 3.3, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%) Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----SYQNFAQEINNIIAHNNDDW 595 + +K R+ + L ++ + + LA+ + S + I NN Sbjct: 1319 EQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQNNAII 1378 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 + + +G+ +A +I+E +N + +E L Sbjct: 1379 PPFVAIQGLGETVANSIIEA-RNQKAFSTIEDLKN 1412 >gi|188518224|ref|ZP_03003759.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188998138|gb|EDU67235.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 11 str. ATCC 33695] Length = 1442 Score = 39.0 bits (89), Expect = 3.3, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%) Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----SYQNFAQEINNIIAHNNDDW 595 + +K R+ + L ++ + + LA+ + S + I NN Sbjct: 1319 EQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQNNAII 1378 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 + + +G+ +A +I+E +N + +E L Sbjct: 1379 PPFVAIQGLGETVANSIIEA-RNQKAFSTIEDLKN 1412 >gi|157118156|ref|XP_001659035.1| EGF repeat molecule, putative [Aedes aegypti] gi|108875803|gb|EAT40028.1| EGF repeat molecule, putative [Aedes aegypti] Length = 996 Score = 39.0 bits (89), Expect = 3.3, Method: Composition-based stats. Identities = 34/336 (10%), Positives = 64/336 (19%), Gaps = 12/336 (3%) Query: 165 ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL 224 LN G+ S A I + N + Sbjct: 239 HNTYGYNCSEVCRCLNGAVCDSATGKCSCSAGWMGADCGLRICPDDRFGENCTGQCECAV 298 Query: 225 RRLNPTDITRYLNFFVHGLGKTSEIFAKG-----QYEMLQKMRCLGFPVNNGVRQANTFH 279 G T Q ++ P N+ N Sbjct: 299 NNTKMCHPWTGKCHCNPGWSSTLCDRPCPFLRYGQDCLIHCNCKNNSPCNHIDGTCNCIA 358 Query: 280 GIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM--ISHKFAEKQAST 337 G E + T + ++ + + G+ +P W + + Sbjct: 359 GYHGENCEEQCSNGTYGQNCSQKCECMNGATCAPETGQCFCAPGWQGIRCDRPCDTHRYG 418 Query: 338 RLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRV 397 + G+ PV G + + + Sbjct: 419 KDCTERCNCSNNGVCNPVNGQCTCPAGWTGERCDKKCDSGRFGQNCSQTCDCNLEHTLAC 478 Query: 398 GDRV--LVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAA 455 + A E +I + P + C + + G Sbjct: 479 NATTGKCICNA-EWGESCNEICTCHNNSSCDPITGDCICSRGWTGPTCNEPCPDGFFG-- 535 Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 H C S + + S I + Sbjct: 536 HGCKERCPVSNTTCDHITGKYSCRPGYIGTTCEHPC 571 >gi|5051417|emb|CAB44958.1| ComEA protein [Neisseria meningitidis] Length = 170 Score = 39.0 bits (89), Expect = 3.3, Method: Composition-based stats. Identities = 17/140 (12%), Positives = 32/140 (22%), Gaps = 1/140 (0%) Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 F L + + + L R L + + Sbjct: 11 PIIRGFLLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGK 70 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 + + + + N L +P +G A+AI E+ +V Sbjct: 71 TMKKMFVLF-CMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSV 129 Query: 626 EALLKEVSPSIGRHEKNVSS 645 + L K K Sbjct: 130 DDLTKVKGIGPAVLAKLKDQ 149 >gi|89100805|ref|ZP_01173657.1| ComEA [Bacillus sp. NRRL B-14911] gi|89084451|gb|EAR63600.1| ComEA [Bacillus sp. NRRL B-14911] Length = 136 Score = 39.0 bits (89), Expect = 3.3, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 + ++ N+ L +P +G A AI+E+ + ++E L++ EK Sbjct: 72 DGMVNINSAGSEELQDIPGIGPSKAAAIIEYRETEGPFQSLEDLMQISGIGEKTFEK 128 >gi|331268616|ref|YP_004395108.1| exonuclease ABC subunit C [Clostridium botulinum BKT015925] gi|329125166|gb|AEB75111.1| exonuclease ABC, C subunit [Clostridium botulinum BKT015925] Length = 622 Score = 39.0 bits (89), Expect = 3.3, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 27/64 (42%), Gaps = 11/64 (17%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I ++G + + L + + S N + + L+ + + A++I+++++ Sbjct: 569 DIPNIGIKRRKELLQKFGSIDNIKKA----------SYDKLLSTDSINEKAAKSIIDYFR 618 Query: 618 NPRN 621 N Sbjct: 619 -KHN 621 >gi|297624197|ref|YP_003705631.1| excinuclease ABC subunit C [Truepera radiovictrix DSM 17093] gi|297165377|gb|ADI15088.1| excinuclease ABC, C subunit [Truepera radiovictrix DSM 17093] Length = 618 Score = 39.0 bits (89), Expect = 3.3, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 19/44 (43%) Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 ++I + L R+P +G + A+A+V F+ N Sbjct: 553 DALLARFSSIDELKSAGVDELARIPGMGRVAAEAVVAFFSAFDN 596 >gi|313890729|ref|ZP_07824354.1| comEA protein [Streptococcus pseudoporcinus SPIN 20026] gi|313120830|gb|EFR43944.1| comEA protein [Streptococcus pseudoporcinus SPIN 20026] Length = 194 Score = 38.6 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 26/64 (40%) Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 + I++ I N L ++P +G A+ I++ ++ +E LLK E Sbjct: 126 KESIDSKININTAKVEDLTKIPGIGAKRAKEIIDVRESQGGFKKLEDLLKISGIGQKTLE 185 Query: 641 KNVS 644 K Sbjct: 186 KLKD 189 >gi|302657133|ref|XP_003020296.1| hypothetical protein TRV_05607 [Trichophyton verrucosum HKI 0517] gi|291184115|gb|EFE39678.1| hypothetical protein TRV_05607 [Trichophyton verrucosum HKI 0517] Length = 865 Score = 38.6 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 10/89 (11%) Query: 653 VFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKI 708 VF+G L + GA +++ ++ +T ++ G N +K+ +A + +KI Sbjct: 546 VFSGVLPLGTDTQNADISLWAKSFGATITSKINSRTTHLVAGRNRTAKVREATRYPKIKI 605 Query: 709 MNEEQFL------FLLQQYNTTLRIHDDD 731 + + L L + + +H DD Sbjct: 606 VTVQWLLDCMIQWKHLDEEPYLVPVHPDD 634 >gi|194895361|ref|XP_001978237.1| GG17807 [Drosophila erecta] gi|190649886|gb|EDV47164.1| GG17807 [Drosophila erecta] Length = 1424 Score = 38.6 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 19/80 (23%) Query: 645 SEIENKKLVFT---GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI------IIVGDNPG 695 ++ +V + G L+ R LGA ++ KT I ++ G Sbjct: 704 QPLKGMTIVVSIYAG-LE---RDFINAAAELLGA----SVN-KTFIKKEKPLLVCPSAEG 754 Query: 696 SKLEKAQQLGVKIMNEEQFL 715 SK E A + ++ ++L Sbjct: 755 SKYEGAIKWNYPVVT-SEWL 773 >gi|209554353|ref|YP_002284813.1| DNA polymerase III PolC [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|209541854|gb|ACI60083.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 1442 Score = 38.6 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%) Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----SYQNFAQEINNIIAHNNDDW 595 + +K R+ + L ++ + + LA+ + S + I NN Sbjct: 1319 EQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQNNAII 1378 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 + + +G+ +A +I+E +N + +E L Sbjct: 1379 PPFVAIQGLGETVANSIIEA-RNQKAFSTIEDLKN 1412 >gi|195867849|ref|ZP_03079848.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|195660426|gb|EDX53684.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 9 str. ATCC 33175] Length = 1442 Score = 38.6 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%) Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----SYQNFAQEINNIIAHNNDDW 595 + +K R+ + L ++ + + LA+ + S + I NN Sbjct: 1319 EQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQNNAII 1378 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 + + +G+ +A +I+E +N + +E L Sbjct: 1379 PPFVAIQGLGETVANSIIEA-RNQKAFSTIEDLKN 1412 >gi|119486789|ref|ZP_01620764.1| Nitrogenase MoFe cofactor biosynthesis protein NifE [Lyngbya sp. PCC 8106] gi|119456082|gb|EAW37215.1| Nitrogenase MoFe cofactor biosynthesis protein NifE [Lyngbya sp. PCC 8106] Length = 500 Score = 38.6 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 50/125 (40%), Gaps = 22/125 (17%) Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF-TGTLQKIQRHKAQE 668 + I + + + VE L+ + ++ + + + K++V TG ++ Sbjct: 282 RNIADHFGDAELKQRVEKLIASENAALDQKLAPYRARLGGKRVVLYTGGVKSWS---IIS 338 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA--QQL----GVKIM--NEEQFLFLLQQ 720 LG V A ++K+ + +KA ++L G+ I + ++ L +++Q Sbjct: 339 AAKDLGIDVVATSTKKST-----EE-----DKARIKKLLGKDGITIEKGSPQELLKVIEQ 388 Query: 721 YNTTL 725 L Sbjct: 389 TGADL 393 >gi|77455420|gb|ABA86519.1| CG11156 [Drosophila erecta] Length = 1413 Score = 38.6 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 19/80 (23%) Query: 645 SEIENKKLVFT---GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI------IIVGDNPG 695 ++ +V + G L+ R LGA ++ KT I ++ G Sbjct: 699 QPLKGMTIVVSIYAG-LE---RDFINAAAELLGA----SVN-KTFIKKEKPLLVCPSAEG 749 Query: 696 SKLEKAQQLGVKIMNEEQFL 715 SK E A + ++ ++L Sbjct: 750 SKYEGAIKWNYPVVT-SEWL 768 >gi|326477486|gb|EGE01496.1| RNA Polymerase II CTD phosphatase Fcp1 [Trichophyton equinum CBS 127.97] Length = 866 Score = 38.6 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 10/89 (11%) Query: 653 VFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKI 708 VF+G L + GA +++ ++ +T ++ G N +K+ +A + +KI Sbjct: 547 VFSGVLPLGTDTQNADISLWAKSFGATITSKINSRTTHLVAGRNRTAKVREATRYTKIKI 606 Query: 709 MNEEQFL------FLLQQYNTTLRIHDDD 731 + + L L + + +H DD Sbjct: 607 VTVQWLLDCMIQWKHLDEEPYLVPVHPDD 635 >gi|300811335|ref|ZP_07091832.1| comEA protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497699|gb|EFK32724.1| comEA protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 250 Score = 38.6 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 22/60 (36%) Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645 ++I N L ++ +G+ A+ I+ + Q + +++ L + Sbjct: 188 DLINLNTATASDLQKLNGIGEKKAEQIIAYRQEKGSFKSIDELKEVSGIGDKTFAAIKDQ 247 >gi|295099824|emb|CBK88913.1| Holliday junction DNA helicase subunit RuvA [Eubacterium cylindroides T2-87] Length = 193 Score = 38.6 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 41/148 (27%) Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + E F+ + ++ +G + A+ + I A DD L +P +G Sbjct: 62 KQEDYEVFMRLINVKGIGPKTAQ-------TMLAVCPGSKMIQAIEEDDVKLLKSLPGIG 114 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A IV ++ LK S+ E+ +S+ + + Sbjct: 115 AKTASQIV-----------LD--LKGKFVSVETKEETISNPVW---------------KE 146 Query: 666 AQEYVTQLGAVV--SAILSR----KTDI 687 QE + LG V + + + KTD+ Sbjct: 147 TQEALVALGYKVNQLSGVRKELANKTDL 174 >gi|288924614|ref|ZP_06418551.1| peptidase, M16 family [Prevotella buccae D17] gi|288338401|gb|EFC76750.1| peptidase, M16 family [Prevotella buccae D17] Length = 941 Score = 38.6 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 24/84 (28%) Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 + + A+ I + N +N + L K+ + +K + Sbjct: 488 IAKVRAEQIAAYVDNVKNEPLISQLPKKGKITKETEDKKLG------------------- 528 Query: 664 HKAQEYVTQLGAVVSAILSRKTDI 687 ++ + GA V + +KTD Sbjct: 529 --FKKLILSNGAKV---ILKKTDF 547 >gi|104773853|ref|YP_618833.1| competence protein ComEA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513860|ref|YP_812766.1| DNA uptake protein related DNA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103422934|emb|CAI97596.1| Competence protein ComEA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093175|gb|ABJ58328.1| DNA uptake protein related DNA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125517|gb|ADY84847.1| Competence protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 248 Score = 38.6 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 22/60 (36%) Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645 ++I N L ++ +G+ A+ I+ + Q + +++ L + Sbjct: 186 DLINLNTATASDLQKLNGIGEKKAEQIIAYRQEKGSFKSIDELKEVSGIGDKTFAAIKDQ 245 >gi|215687334|dbj|BAG91866.1| unnamed protein product [Oryza sativa Japonica Group] Length = 901 Score = 38.6 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 + T L +R + + + Q G SA L+R+ ++ + G K AQ+ G Sbjct: 204 PFSGLNICIT-KLNVDERRELAKIIVQNGGQYSANLTRRCTHLVSNEPGGDKYVVAQKWG 262 >gi|225550655|ref|ZP_03771604.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225379809|gb|EEH02171.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 1442 Score = 38.6 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%) Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----SYQNFAQEINNIIAHNNDDW 595 + +K R+ + L ++ + + LA+ + S + I NN Sbjct: 1319 EQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQNNAII 1378 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 + + +G+ +A +I+E +N + +E L Sbjct: 1379 PPFVAIQGLGETVANSIIEA-RNQKAFSTIEDLKN 1412 >gi|185178976|ref|ZP_02964733.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|225551037|ref|ZP_03771983.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209258|gb|EDU06301.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|225378852|gb|EEH01217.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 1442 Score = 38.6 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%) Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----SYQNFAQEINNIIAHNNDDW 595 + +K R+ + L ++ + + LA+ + S + I NN Sbjct: 1319 EQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQNNAII 1378 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 + + +G+ +A +I+E +N + +E L Sbjct: 1379 PPFVAIQGLGETVANSIIEA-RNQKAFSTIEDLKN 1412 >gi|169827695|ref|YP_001697853.1| glutamate dehydrogenase [Lysinibacillus sphaericus C3-41] gi|168992183|gb|ACA39723.1| NADP-specific glutamate dehydrogenase [Lysinibacillus sphaericus C3-41] Length = 457 Score = 38.6 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 6/46 (13%) Query: 635 SIGRHEKNVSSEIENKKLVFTGT--LQKIQRHKAQEYVTQLGAVVS 678 + K+V+ E K +V +G+ + A E Q GA V Sbjct: 228 FVNEMLKDVNDSFEGKTVVVSGSGNVSTY----AIEKAQQYGAKVV 269 >gi|188589352|ref|YP_001919647.1| DNA integrity scanning protein DisA [Clostridium botulinum E3 str. Alaska E43] gi|251777748|ref|ZP_04820668.1| DNA integrity scanning protein DisA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|226729437|sp|B2UY85|DISA_CLOBA RecName: Full=DNA integrity scanning protein disA gi|188499633|gb|ACD52769.1| DNA integrity scanning protein DisA [Clostridium botulinum E3 str. Alaska E43] gi|243082063|gb|EES47953.1| DNA integrity scanning protein DisA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 354 Score = 38.6 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 20/51 (39%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 +N +E + + D L V +G+ A+AI + + R + Sbjct: 302 IENLIKEFRELNSVIEADLDELDIVEGIGEARAKAIKDGLKRIREQILLNK 352 >gi|220930937|ref|YP_002507845.1| predicted nucleic-acid-binding protein (contains the HHH domain) [Halothermothrix orenii H 168] gi|219992247|gb|ACL68850.1| predicted nucleic-acid-binding protein (contains the HHH domain) [Halothermothrix orenii H 168] Length = 359 Score = 38.6 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 10/69 (14%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I + + +L ++ S Q L V VG++ A+AI + + Sbjct: 299 IPRLPMPVIDNLVGHFGSLQKVLNAFP----------DELDDVDGVGEVRAKAIKDGLRR 348 Query: 619 PRNICAVEA 627 R+ ++ Sbjct: 349 LRDQVLLDR 357 >gi|77455416|gb|ABA86517.1| CG11156 [Drosophila yakuba] Length = 1405 Score = 38.6 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 19/80 (23%) Query: 645 SEIENKKLVFT---GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI------IIVGDNPG 695 ++ +V + G L+ R LGA ++ KT I ++ G Sbjct: 699 QPLKGMTIVVSIYAG-LE---RDFINAAAELLGA----SVN-KTFIRKEKPLLVCPSAEG 749 Query: 696 SKLEKAQQLGVKIMNEEQFL 715 SK + A + ++ ++L Sbjct: 750 SKYDGAIKWNYPVVT-SEWL 768 >gi|296117956|ref|ZP_06836539.1| excinuclease ABC subunit C [Corynebacterium ammoniagenes DSM 20306] gi|295969187|gb|EFG82429.1| excinuclease ABC subunit C [Corynebacterium ammoniagenes DSM 20306] Length = 624 Score = 38.6 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 10/57 (17%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 I +G L K++ S + + + V +G +A I E Sbjct: 574 SIPGLGPTRRMDLVKHFGSVKKLKEASE----------EQIAEVKGIGPKMAATIFE 620 >gi|257438675|ref|ZP_05614430.1| excinuclease ABC subunit C [Faecalibacterium prausnitzii A2-165] gi|257198904|gb|EEU97188.1| excinuclease ABC subunit C [Faecalibacterium prausnitzii A2-165] Length = 615 Score = 38.6 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 10/59 (16%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 + VG + A++L + S + L P VG +AQ I +++ Sbjct: 566 VPGVGPKTAKALMTQFKSVGAVREATP----------DQLENTPGVGPQLAQTIYDYFH 614 >gi|297544351|ref|YP_003676653.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842126|gb|ADH60642.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 201 Score = 38.6 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKNV 643 I N L +P +G + A+ I+EF +N +E ++ + P + K+ Sbjct: 138 EKININTATKEELETLPGIGPVTAERIIEFRENKGFFKKIEDIMNVPRIGPKMFEQIKDK 197 >gi|289578078|ref|YP_003476705.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermoanaerobacter italicus Ab9] gi|289527791|gb|ADD02143.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermoanaerobacter italicus Ab9] Length = 201 Score = 38.6 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKNV 643 I N L +P +G + A+ I+EF +N +E ++ + P + K+ Sbjct: 138 EKININTATKEELETLPGIGPVTAERIIEFRENKGFFKKIEDIMNVPRIGPKMFEQIKDK 197 >gi|326328756|ref|ZP_08195092.1| putative DNA-binding protein [Nocardioidaceae bacterium Broad-1] gi|325953378|gb|EGD45382.1| putative DNA-binding protein [Nocardioidaceae bacterium Broad-1] Length = 360 Score = 38.6 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 9/69 (13%), Positives = 21/69 (30%), Gaps = 10/69 (14%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 + + + L ++ + Q L V VG++ A+++ E Sbjct: 300 VPRLPPAVVDRLVDHFGTLQKLLSA----------SVDDLQAVEGVGELRARSVREGLSR 349 Query: 619 PRNICAVEA 627 +E Sbjct: 350 LAESTILER 358 >gi|325684379|gb|EGD26548.1| competence protein ComEA [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 252 Score = 38.6 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 22/60 (36%) Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645 ++I N L ++ +G+ A+ I+ + Q + +++ L + Sbjct: 190 DLINLNTATASDLQKLNGIGEKKAEQIIAYRQEKGSFKSIDELKEVSGIGDKTFAAIKDQ 249 >gi|255325515|ref|ZP_05366617.1| DNA-binding protein [Corynebacterium tuberculostearicum SK141] gi|255297453|gb|EET76768.1| DNA-binding protein [Corynebacterium tuberculostearicum SK141] Length = 232 Score = 38.6 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%) Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 N+ L + VG++ A AIV + + VE LL+ + + Sbjct: 175 NSATAEELTELKGVGEVTAHAIVAYREEHGGFKDVEELLEVSGIGPAKLAQLKDQI 230 >gi|114799928|ref|YP_761639.1| short chain dehydrogenase/reductase family oxidoreductase [Hyphomonas neptunium ATCC 15444] gi|114740102|gb|ABI78227.1| oxidoreductase, short chain dehydrogenase/reductase family [Hyphomonas neptunium ATCC 15444] Length = 335 Score = 38.6 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%) Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + +E K ++ TGT R A+ Y +LGA V Sbjct: 31 ETSPQAPAPGALEGKTILITGTASGFGRLGAEHYA-RLGARV 71 >gi|4586101|emb|CAB40937.1| putative protein [Arabidopsis thaliana] gi|7267897|emb|CAB78239.1| putative protein [Arabidopsis thaliana] Length = 338 Score = 38.6 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 9/21 (42%), Positives = 11/21 (52%) Query: 36 YQYSKPIILDSEYDALKRRCD 56 Y PI+ D EYD LK + Sbjct: 139 YVSGNPILSDEEYDKLKMKLK 159 >gi|42566515|ref|NP_192933.2| PGRL1B (PGR5-Like B) [Arabidopsis thaliana] gi|75151402|sp|Q8GYC7|PGL1B_ARATH RecName: Full=PGR5-like protein 1B, chloroplastic; Flags: Precursor gi|26450517|dbj|BAC42372.1| unknown protein [Arabidopsis thaliana] gi|28950891|gb|AAO63369.1| At4g11960 [Arabidopsis thaliana] gi|332657674|gb|AEE83074.1| PGR5-like protein 1B [Arabidopsis thaliana] Length = 313 Score = 38.6 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 9/21 (42%), Positives = 11/21 (52%) Query: 36 YQYSKPIILDSEYDALKRRCD 56 Y PI+ D EYD LK + Sbjct: 139 YVSGNPILSDEEYDKLKMKLK 159 >gi|313140289|ref|ZP_07802482.1| nuclease subunit of the excinuclease complex [Bifidobacterium bifidum NCIMB 41171] gi|313132799|gb|EFR50416.1| nuclease subunit of the excinuclease complex [Bifidobacterium bifidum NCIMB 41171] Length = 794 Score = 38.6 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 13/113 (11%) Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 P D + + ++Q+ + + Y +R+ GI VG Sbjct: 695 PDDEYPIILKRQSEGMYLLQRVRDESHRFAITYHRQTRRKGALRSA---LDGIPGVGETY 751 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 + L ++ S + L V +G A+AI Sbjct: 752 QKRLLSHFGSVRAMRDA----------SVEELEAVKGIGHAKAEAIHTALHAE 794 >gi|292622477|ref|XP_690042.2| PREDICTED: retinol dehydrogenase 13-like [Danio rerio] Length = 337 Score = 38.6 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 ++ K +V TG I R A++ GA V Sbjct: 50 LDGKTVVITGANTGIGRETAKDMA-YRGARVV 80 >gi|224283140|ref|ZP_03646462.1| excinuclease ABC subunit C [Bifidobacterium bifidum NCIMB 41171] Length = 780 Score = 38.6 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 13/113 (11%) Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 P D + + ++Q+ + + Y +R+ GI VG Sbjct: 681 PDDEYPIILKRQSEGMYLLQRVRDESHRFAITYHRQTRRKGALRSA---LDGIPGVGETY 737 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 + L ++ S + L V +G A+AI Sbjct: 738 QKRLLSHFGSVRAMRDA----------SVEELEAVKGIGHAKAEAIHTALHAE 780 >gi|213403374|ref|XP_002172459.1| DNA repair protein Rhp9 [Schizosaccharomyces japonicus yFS275] gi|212000506|gb|EEB06166.1| DNA repair protein Rhp9 [Schizosaccharomyces japonicus yFS275] Length = 634 Score = 38.6 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 7/26 (26%), Positives = 11/26 (42%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVV 677 V TG+ R + + + Q G V Sbjct: 398 FVLTGSNSSYNRLEMKNLIKQFGGTV 423 >gi|203287496|ref|YP_002222511.1| Holliday junction DNA helicase [Borrelia recurrentis A1] gi|226698726|sp|B5RQK6|RUVA_BORRA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|201084716|gb|ACH94290.1| Holliday junction DNA helicase [Borrelia recurrentis A1] Length = 196 Score = 38.6 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 4/83 (4%) Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629 + Y+ + + + + + +LI V +G A I+ + A+ Sbjct: 46 ILTYFHFRDDDVKLFGFLNISEREVFENLIGVDGIGPKAALKILSGIKYDAFRLAIAK-- 103 Query: 630 KEVSPSIGRHEKNVSSEIENKKL 652 ++ K + ++I K Sbjct: 104 --EDINLISKVKGIGNKIAGKIF 124 >gi|328862593|gb|EGG11694.1| hypothetical protein MELLADRAFT_90918 [Melampsora larici-populina 98AG31] Length = 679 Score = 38.6 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 10/66 (15%) Query: 650 KKLV-FTGTLQKIQRHKAQEYVTQLGAVVSA----ILSRKTDIIIVGDNPGSKLEKAQQL 704 K +V T R + ++G S T +++ + G K+E A +L Sbjct: 381 KNVVSIT-NYTGFSRAWLIRLIEKMGLKYSGPLDCS----TSLLLAANKSGKKVEWASEL 435 Query: 705 GVKIMN 710 G+ +N Sbjct: 436 GIPTVN 441 >gi|161507964|ref|YP_001577928.1| DNA polymerase [Lactobacillus helveticus DPC 4571] gi|160348953|gb|ABX27627.1| DNA polymerase [Lactobacillus helveticus DPC 4571] Length = 317 Score = 38.6 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 29/128 (22%) Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVS----------SEIENKKLVFTGTLQKIQRHKAQ 667 N N E LL++ I + + +++K +V +G L + + A Sbjct: 192 NDFNQHFTEDLLEQAIGKIKNVDLTGDEVDYYQLGFRNPVQDKNIVLSGNL-HMDQRDAG 250 Query: 668 EYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQQL-----GVKIMNEEQ 713 + + +G + + T+ +I+G ++ L +A+ L +K ++E Sbjct: 251 KMINNMGGQLDQNVENTTNYLIMGDHDFFRKNNED----LNRARLLIKDGAKIKRLSESF 306 Query: 714 FLFLLQQY 721 FL +L + Sbjct: 307 FLSMLDDW 314 >gi|319654841|ref|ZP_08008916.1| DNA-binding protein [Bacillus sp. 2_A_57_CT2] gi|317393404|gb|EFV74167.1| DNA-binding protein [Bacillus sp. 2_A_57_CT2] Length = 357 Score = 38.6 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 21/190 (11%), Positives = 50/190 (26%), Gaps = 19/190 (10%) Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504 + + + L ++S + Q + + E A I Sbjct: 178 EFEELVTYSDILHVFHNIEMVLRIKNELLTYLSELGTEGRLIRLQMNELLMELEREAEWI 237 Query: 505 -------RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 R + + Q+ S ++ + N Y + + R + Sbjct: 238 IKDYAQSRDIDSRDAIVKLQELSKGEMLEDSVILKLLGYNGYIHTEEFKCPRGYRMLNK- 296 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 + + I +L + + N L V +G++ A+ I E + Sbjct: 297 -VPRLPPIIIDNLINRFEEFPNIITAT----------VEELDEVEGIGEVRARKIKEGLK 345 Query: 618 NPRNICAVEA 627 + + Sbjct: 346 LIKEQVFADR 355 >gi|312831421|emb|CBY17601.1| unnamed protein product [Escherichia coli LF82] gi|323963929|gb|EGB59422.1| hypothetical protein ERJG_04702 [Escherichia coli M863] gi|327252326|gb|EGE63998.1| hypothetical protein ECSTEC7V_3178 [Escherichia coli STEC_7v] Length = 160 Score = 38.6 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 2/69 (2%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 + FTG +K + + + + G V +++ ++ G N G SK+ A+ G I++ Sbjct: 86 VCFTG-FKKADKERLVDKANEQGLTVRTSVTQNLQMLCCGYNAGPSKVSAARMKGTIIID 144 Query: 711 EEQFLFLLQ 719 E F+ L+ Sbjct: 145 EPGFIHFLE 153 >gi|126730491|ref|ZP_01746302.1| excinuclease ABC subunit C [Sagittula stellata E-37] gi|126709224|gb|EBA08279.1| excinuclease ABC subunit C [Sagittula stellata E-37] Length = 629 Score = 38.6 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 10/83 (12%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ + + ++ VGA R+L +++ S A + + Sbjct: 555 HRFAIGTHRAKRAKAQMANPLDEVQGVGAARKRALLQHFGS----------AKAVSRANL 604 Query: 596 LSLIRVPLVGDIIAQAIVEFYQN 618 L V V + +A+ I F+ Sbjct: 605 ADLKAVDGVSEALAERIYAFFHE 627 >gi|123417461|ref|XP_001305118.1| virulent strain associated lipoprotein [Trichomonas vaginalis G3] gi|121886617|gb|EAX92188.1| virulent strain associated lipoprotein, putative [Trichomonas vaginalis G3] Length = 884 Score = 38.6 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 22/41 (53%) Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 GAV S L++K +I GSK E A + G+ +++ + Sbjct: 369 GAVHSKNLTKKVSYLIANKQSGSKYEMALKWGITVVSVDAL 409 >gi|21227489|ref|NP_633411.1| Hef nuclease [Methanosarcina mazei Go1] gi|20905864|gb|AAM31083.1| ATP-dependent RNA helicase, EIF-4A family [Methanosarcina mazei Go1] Length = 864 Score = 38.6 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 10/62 (16%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I ++G + AR+L Y+ S + + D L +V +G A I E + Sbjct: 810 SISNIGPKAARNLLSYFGSVEAVMRA----------DIEELKKVKQIGPKTAARIREVLE 859 Query: 618 NP 619 +P Sbjct: 860 SP 861 >gi|255994367|ref|ZP_05427502.1| competence protein CelA [Eubacterium saphenum ATCC 49989] gi|255993080|gb|EEU03169.1| competence protein CelA [Eubacterium saphenum ATCC 49989] Length = 211 Score = 38.6 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 22/53 (41%) Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 N D L V +G A+ I+++ +N N VE L+K +K Sbjct: 152 NLNTADATKLQTVNGIGPATAEKIIDYRENNGNFKKVEDLVKVPGIGPKTVQK 204 >gi|310644233|ref|YP_003948992.1| DNA-binding protein [Paenibacillus polymyxa SC2] gi|309249184|gb|ADO58751.1| DNA-binding protein [Paenibacillus polymyxa SC2] Length = 358 Score = 38.6 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 7/51 (13%), Positives = 16/51 (31%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 N + L V +G++ A+ I E + + ++ Sbjct: 306 IHNLVERFGRFPHVMTATIEELDEVDGIGEVRARTIKEGLKRLQEQVFIDR 356 >gi|296453196|ref|YP_003660339.1| glutamate dehydrogenase [Bifidobacterium longum subsp. longum JDM301] gi|296182627|gb|ADG99508.1| Glutamate dehydrogenase (NADP(+)) [Bifidobacterium longum subsp. longum JDM301] Length = 448 Score = 38.6 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 7/41 (17%) Query: 644 SSEIENKKLVFTGT--LQKIQRHKAQEYVTQLGAVVSAILS 682 + E K +V +G+ + A + QLGA V +S Sbjct: 228 NDSFEGKTVVISGSGNVATY----AAQKAEQLGAKVVT-VS 263 >gi|23335946|ref|ZP_00121177.1| COG0334: Glutamate dehydrogenase/leucine dehydrogenase [Bifidobacterium longum DJO10A] gi|23465213|ref|NP_695816.1| glutamate dehydrogenase [Bifidobacterium longum NCC2705] gi|189440289|ref|YP_001955370.1| glutamate dehydrogenase [Bifidobacterium longum DJO10A] gi|227547501|ref|ZP_03977550.1| glutamate dehydrogenase (NADP(+)) [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239622833|ref|ZP_04665864.1| glutamate dehydrogenase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133623|ref|YP_004000962.1| gdha [Bifidobacterium longum subsp. longum BBMN68] gi|317482371|ref|ZP_07941390.1| glutamate/Leucine/Phenylalanine/Valine dehydrogenase [Bifidobacterium sp. 12_1_47BFAA] gi|322688201|ref|YP_004207935.1| glutamate dehydrogenase [Bifidobacterium longum subsp. infantis 157F] gi|322690203|ref|YP_004219773.1| glutamate dehydrogenase [Bifidobacterium longum subsp. longum JCM 1217] gi|23325840|gb|AAN24452.1| NADP-specific glutamate dehydrogenase [Bifidobacterium longum NCC2705] gi|189428724|gb|ACD98872.1| Glutamate dehydrogenase/leucine dehydrogenase [Bifidobacterium longum DJO10A] gi|227212016|gb|EEI79912.1| glutamate dehydrogenase (NADP(+)) [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239514830|gb|EEQ54697.1| glutamate dehydrogenase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517726|emb|CBK71342.1| glutamate dehydrogenase (NADP) [Bifidobacterium longum subsp. longum F8] gi|311772880|gb|ADQ02368.1| GdhA [Bifidobacterium longum subsp. longum BBMN68] gi|316916165|gb|EFV37568.1| glutamate/Leucine/Phenylalanine/Valine dehydrogenase [Bifidobacterium sp. 12_1_47BFAA] gi|320455059|dbj|BAJ65681.1| glutamate dehydrogenase [Bifidobacterium longum subsp. longum JCM 1217] gi|320459537|dbj|BAJ70157.1| glutamate dehydrogenase [Bifidobacterium longum subsp. infantis 157F] Length = 448 Score = 38.6 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 7/41 (17%) Query: 644 SSEIENKKLVFTGT--LQKIQRHKAQEYVTQLGAVVSAILS 682 + E K +V +G+ + A + QLGA V +S Sbjct: 228 NDSFEGKTVVISGSGNVATY----AAQKAEQLGAKVVT-VS 263 >gi|224419232|ref|ZP_03657238.1| competence protein ComEA helix-hairpin-helix region [Helicobacter canadensis MIT 98-5491] Length = 67 Score = 38.6 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 27/64 (42%), Gaps = 5/64 (7%) Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 + L +L+ ++ N + L+ + +G+ AQAI+++ + +++ Sbjct: 1 MKLLVALFLALSFLFGAVD----LNKANKEELMSIKGIGEAKAQAIIDY-REKTPFKSID 55 Query: 627 ALLK 630 L Sbjct: 56 DLKN 59 >gi|315038988|ref|YP_004032556.1| DNA polymerase III [Lactobacillus amylovorus GRL 1112] gi|325957414|ref|YP_004292826.1| DNA polymerase III [Lactobacillus acidophilus 30SC] gi|312277121|gb|ADQ59761.1| DNA polymerase III [Lactobacillus amylovorus GRL 1112] gi|325333979|gb|ADZ07887.1| DNA polymerase III [Lactobacillus acidophilus 30SC] gi|327184122|gb|AEA32569.1| DNA polymerase III [Lactobacillus amylovorus GRL 1118] Length = 318 Score = 38.6 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 29/120 (24%) Query: 626 EALLKEVSPSIGRHEKNVS----------SEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + LL+ I + + ++NK +V +G + + A + + +G Sbjct: 201 DDLLEATRNKIKNVDLTGDDVDYIDLGFRNPVQNKNIVLSGHI-HMDEQDADKMIGNMGG 259 Query: 676 VVSAILSRKTDIIIVG---------DNPGSKLEKAQQL-----GVKIMNEEQFLFLLQQY 721 V ++ T+ +I+G ++ L A+ L +K ++E FL +L + Sbjct: 260 KVEDKVNPMTNYLIMGDHDFFRKDNED----LNTARDLIKDGAKIKRLSESFFLGMLDDW 315 >gi|294495366|ref|YP_003541859.1| ERCC4 domain protein [Methanohalophilus mahii DSM 5219] gi|292666365|gb|ADE36214.1| ERCC4 domain protein [Methanohalophilus mahii DSM 5219] Length = 754 Score = 38.6 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 10/56 (17%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 I +G + AR+L +++ S + + L V L+G A I E Sbjct: 701 IPQLGPQAARNLLEHFGSVEAVMKACE----------EELREVKLIGPKTAARIRE 746 >gi|227551295|ref|ZP_03981344.1| competence protein ComEA [Enterococcus faecium TX1330] gi|257887588|ref|ZP_05667241.1| competence protein ComEA [Enterococcus faecium 1,141,733] gi|257896084|ref|ZP_05675737.1| competence protein ComEA [Enterococcus faecium Com12] gi|293377501|ref|ZP_06623697.1| comEA protein [Enterococcus faecium PC4.1] gi|227179575|gb|EEI60547.1| competence protein ComEA [Enterococcus faecium TX1330] gi|257823642|gb|EEV50574.1| competence protein ComEA [Enterococcus faecium 1,141,733] gi|257832649|gb|EEV59070.1| competence protein ComEA [Enterococcus faecium Com12] gi|292643870|gb|EFF61984.1| comEA protein [Enterococcus faecium PC4.1] Length = 225 Score = 38.6 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 7/66 (10%) Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647 I N L ++P +G + AQ I+ F + + VE L + EK Sbjct: 164 ININTASPSELQQIPGIGSVKAQEIIRFREENGSFQKVEDLQEISGIGEKTVEKL----- 218 Query: 648 ENKKLV 653 K V Sbjct: 219 --KNFV 222 >gi|315446079|ref|YP_004078958.1| hypothetical protein Mspyr1_45720 [Mycobacterium sp. Spyr1] gi|315264382|gb|ADU01124.1| hypothetical protein Mspyr1_45720 [Mycobacterium sp. Spyr1] Length = 781 Score = 38.6 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 17/93 (18%) Query: 642 NVSSEIE-NKKLVFTGT--------LQKIQRHKAQEYVTQLGAVVSAILSR-KTDIII-- 689 +V + ++ FTGT ++ R + + T G V +++ + D+++ Sbjct: 693 DVDGILAPGARICFTGTAQDPDGRVVE---RDEMERLATAAGLVPVKSVTKTRCDVLVTA 749 Query: 690 -VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 G G K KA + ++ + F L + Sbjct: 750 EAGTQSG-KARKALEYDKPVLCADDFFTWLAAH 781 >gi|313123470|ref|YP_004033729.1| DNA uptake protein related DNA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280033|gb|ADQ60752.1| DNA uptake protein related DNA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 252 Score = 38.6 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 22/60 (36%) Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645 ++I N L ++ +G+ A+ I+ + Q + +++ L + Sbjct: 190 DLINLNTATASDLQKLNGIGEKKAEQIIAYRQEKGSFKSIDELKEVSGIGDKTFAAIKDQ 249 >gi|261379141|ref|ZP_05983714.1| DNA topoisomerase [Neisseria cinerea ATCC 14685] gi|269144414|gb|EEZ70832.1| DNA topoisomerase [Neisseria cinerea ATCC 14685] Length = 96 Score = 38.6 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 20/62 (32%) Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 + N L +P +G A+AIVE+ +V+ L K K Sbjct: 14 SFAAVNVNAASQQELEALPGIGPAKAKAIVEYRAQNGAFKSVDELTKVKGIGPAVLAKLK 73 Query: 644 SS 645 Sbjct: 74 DQ 75 >gi|261378489|ref|ZP_05983062.1| DNA topoisomerase [Neisseria cinerea ATCC 14685] gi|261379152|ref|ZP_05983725.1| DNA topoisomerase [Neisseria cinerea ATCC 14685] gi|269144381|gb|EEZ70799.1| DNA topoisomerase [Neisseria cinerea ATCC 14685] gi|269145289|gb|EEZ71707.1| DNA topoisomerase [Neisseria cinerea ATCC 14685] Length = 99 Score = 38.6 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 20/62 (32%) Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 + N L +P +G A+AIVE+ +V+ L K K Sbjct: 17 SFAAVNVNAASQQELEALPGIGPAKAKAIVEYRAQNGAFKSVDELTKVKGIGPAVLAKLK 76 Query: 644 SS 645 Sbjct: 77 DQ 78 >gi|124504849|ref|XP_001351167.1| N2227-like protein, putative [Plasmodium falciparum 3D7] gi|3649764|emb|CAB11113.1| N2227-like protein, putative [Plasmodium falciparum 3D7] Length = 955 Score = 38.6 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 14/348 (4%), Positives = 57/348 (16%), Gaps = 10/348 (2%) Query: 162 DVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR----KPYANPR 217 D + + E+R ++ S+N+ ++ + G + + Sbjct: 266 DKVYNYHNFNVRLLCKDDALIILNEIRSKMINSQNEKKIVDMLNMKCGDVIVDDKNGSDK 325 Query: 218 NAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANT 277 ++ + + + + ++ N Sbjct: 326 DSGNNDIHNKDIHNKYDDNMDSSDKSSCNKNSCDNHCDNHCDNHSDNHCDNHSDNHCDNH 385 Query: 278 FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF---SLQKQLGERARSPRWMISHKFAEKQ 334 + + + + D + + Sbjct: 386 CDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNH 445 Query: 335 ASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA--TLHNEDYIKGLDASGKVMRGG 392 + + + + N + Sbjct: 446 SDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHSDNHCDNHCDNHSDNHCDNHCDNHSDNH 505 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 D + + N + + C + Sbjct: 506 CDNHCDNHCDNHCDNHCDNHCDNHCDNH-CDNHCDNHCDNHCDNHCDNHCDNHCDNHCDN 564 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 + C + + N + + + + Sbjct: 565 HCDNHCDNNKMNRTHLMNSNTKGDDQTCKNTNEYSDTSSNHYCNNIEE 612 >gi|73662477|ref|YP_301258.1| DNA uptake protein and related DNA-binding protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494992|dbj|BAE18313.1| putative DNA uptake protein and related DNA-binding protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 240 Score = 38.6 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 52/149 (34%), Gaps = 5/149 (3%) Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563 I+ + + + T K ++ ++ +I +G + Sbjct: 92 IKGAVQHPDIYKMKDTDRVKQLVDKAILLKDADLSSVNLAEKLQDQKVIYIPKIGDKDQK 151 Query: 564 AEIARSLA---KYYLSYQNFAQEINNIIAHNNDDWL-SLIRVPLVGDIIAQAIVEFYQNP 619 A + + IN+ + ND L+ + +G A+AI+E+ Q Sbjct: 152 DINMNHFALKNNHTEDSKKGNSTINSEQININDATESQLLTINGIGPTKAKAIIEYRQQH 211 Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIE 648 +VE L K+V+ + + + S++ Sbjct: 212 GPFESVEQL-KDVNGIGAKTLEKIGSKLT 239 >gi|27807449|ref|NP_777176.1| poly [ADP-ribose] polymerase 1 [Bos taurus] gi|130779|sp|P18493|PARP1_BOVIN RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1; AltName: Full=NAD(+) ADP-ribosyltransferase 1; Short=ADPRT 1; AltName: Full=Poly[ADP-ribose] synthase 1 gi|217582|dbj|BAA14114.1| poly(ADP-ribose) synthetase [Bos taurus] Length = 1016 Score = 38.6 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 36/86 (41%), Gaps = 25/86 (29%) Query: 644 SSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSR------------KTDIIIV 690 + N K+ T G L + + + + + +LG ++ ++ K + Sbjct: 389 DKPLSNMKI-LTLGKLSQ-NKDEVKATIEKLGGKLTGTANKASLCISTKKEVDKLN---- 442 Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLF 716 K+E+ ++ +++++E+ FL Sbjct: 443 -----KKMEEVKEANIRVVSED-FLQ 462 >gi|322706326|gb|EFY97907.1| RNA Polymerase II CTD phosphatase Fcp1 [Metarhizium anisopliae ARSEF 23] Length = 807 Score = 38.6 bits (88), Expect = 4.0, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 3/54 (5%) Query: 640 EKNVSSEIENKKLVFTGTLQ---KIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690 ++ S+ + +V +G + I+ + GA V +SR+ ++V Sbjct: 503 DELKSNVLSGLVIVLSGLVPLGVNIEDSEIGMQAQSFGAQVLDSVSRRVTHLVV 556 >gi|315093170|gb|EFT65146.1| comEA protein [Propionibacterium acnes HL060PA1] Length = 283 Score = 38.6 bits (88), Expect = 4.0, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 21/57 (36%) Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 + N + L + VG ++A I+ + Q +V+ L + EK Sbjct: 220 KAPVDLNTANQSELETIDGVGPVMAGKIMAWRQEHGQFASVDQLREISGIGAKTFEK 276 >gi|314966912|gb|EFT11011.1| comEA protein [Propionibacterium acnes HL082PA2] gi|327327733|gb|EGE69509.1| ComE operon protein 1 [Propionibacterium acnes HL103PA1] Length = 283 Score = 38.6 bits (88), Expect = 4.0, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 21/57 (36%) Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 + N + L + VG ++A I+ + Q +V+ L + EK Sbjct: 220 KAPVDLNTANQSELETIDGVGPVMAGKIMAWRQEHGQFASVDQLREISGIGAKTFEK 276 >gi|256397462|ref|YP_003119026.1| DNA integrity scanning protein DisA [Catenulispora acidiphila DSM 44928] gi|256363688|gb|ACU77185.1| protein of unknown function DUF147 [Catenulispora acidiphila DSM 44928] Length = 362 Score = 38.6 bits (88), Expect = 4.0, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 10/69 (14%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 + + + L +++ Q L RV VG+ A+++ E Sbjct: 302 VPRLPGAVIDRLVEHFGGLQKLLAA----------SIDDLQRVEGVGETRARSVREGLSR 351 Query: 619 PRNICAVEA 627 +E Sbjct: 352 LAESSILER 360 >gi|157690871|ref|YP_001485333.1| DNA integrity scanning protein DisA [Bacillus pumilus SAFR-032] gi|167016888|sp|A8F956|DISA_BACP2 RecName: Full=DNA integrity scanning protein disA gi|157679629|gb|ABV60773.1| DNA integrity scanning protein [Bacillus pumilus SAFR-032] Length = 359 Score = 38.6 bits (88), Expect = 4.0, Method: Composition-based stats. Identities = 16/194 (8%), Positives = 48/194 (24%), Gaps = 15/194 (7%) Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S + + + + ++ + Q + E Sbjct: 174 SALSALEFEELVTFGDVLSVLHRYEMVLRIKNEINMYIKELGTEGHLIRLQVNELITDME 233 Query: 499 DPAFS-----IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 A ++ + +Q + E + + S N + + Sbjct: 234 QEAALFIKDYVKEKIKDPYVLLKQLQDMSSFELLDDSILYKLLGYPASTNIDEYVYTRGY 293 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I + I ++ + + + D L V +G++ A+ I Sbjct: 294 RLLHKIPRLPMPIVENVVEAFGVLDRIMEA----------DVQDLDEVEGIGEVRAKKIK 343 Query: 614 EFYQNPRNICAVEA 627 + + + ++ Sbjct: 344 KGLKRLQEKHYIDR 357 >gi|50842380|ref|YP_055607.1| ComE operon protein 1 [Propionibacterium acnes KPA171202] gi|282854162|ref|ZP_06263499.1| comEA protein [Propionibacterium acnes J139] gi|50839982|gb|AAT82649.1| ComE operon protein 1 [Propionibacterium acnes KPA171202] gi|282583615|gb|EFB88995.1| comEA protein [Propionibacterium acnes J139] gi|314923143|gb|EFS86974.1| comEA protein [Propionibacterium acnes HL001PA1] gi|314981253|gb|EFT25347.1| comEA protein [Propionibacterium acnes HL110PA3] gi|315091822|gb|EFT63798.1| comEA protein [Propionibacterium acnes HL110PA4] gi|315103325|gb|EFT75301.1| comEA protein [Propionibacterium acnes HL050PA2] gi|315105530|gb|EFT77506.1| comEA protein [Propionibacterium acnes HL030PA1] Length = 283 Score = 38.6 bits (88), Expect = 4.0, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 21/57 (36%) Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 + N + L + VG ++A I+ + Q +V+ L + EK Sbjct: 220 KAPVDLNTANQSELETIDGVGPVMAGKIMAWRQEHGQFASVDQLREISGIGAKTFEK 276 >gi|21674621|ref|NP_662686.1| excinuclease ABC, subunit C [Chlorobium tepidum TLS] gi|32130301|sp|Q8KBI0|UVRC_CHLTE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|21647822|gb|AAM73028.1| excinuclease ABC, subunit C [Chlorobium tepidum TLS] Length = 626 Score = 38.6 bits (88), Expect = 4.0, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 15/136 (11%) Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG--FGDVSVTNLYDSI 542 + Q L A + +I+ + K L + + Sbjct: 498 NVAWQVLQELGLDLPVAGLAKRLEEIYVPNEPDPYNLPKTSPALKLLQQLRDEAHRFAIT 557 Query: 543 NKRRNISLERFIFSL-GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 R+ S L GI+ VG + A L K++ S ++ ++ L V Sbjct: 558 YHRKLRSDRTIRTELTGIKGVGEKSAEKLLKHFGSVESVSKA----------SIDELSAV 607 Query: 602 PLVGDIIAQAIVEFYQ 617 G A++I ++ Sbjct: 608 A--GRKTAESIYRYFN 621 >gi|331084378|ref|ZP_08333482.1| hypothetical protein HMPREF0992_02406 [Lachnospiraceae bacterium 6_1_63FAA] gi|330401642|gb|EGG81223.1| hypothetical protein HMPREF0992_02406 [Lachnospiraceae bacterium 6_1_63FAA] Length = 200 Score = 38.6 bits (88), Expect = 4.0, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 13/65 (20%) Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647 I N D L +P VG+ AQ+I+E+ + +E L + Sbjct: 139 ININTADLTELQEIPGVGEKKAQSIMEYREACGGFQNIEQLQEVPGI------------- 185 Query: 648 ENKKL 652 + K Sbjct: 186 KGKTF 190 >gi|296125102|ref|YP_003632354.1| excinuclease ABC, C subunit [Brachyspira murdochii DSM 12563] gi|296016918|gb|ADG70155.1| excinuclease ABC, C subunit [Brachyspira murdochii DSM 12563] Length = 613 Score = 38.6 bits (88), Expect = 4.1, Method: Composition-based stats. Identities = 14/114 (12%), Positives = 33/114 (28%), Gaps = 13/114 (11%) Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563 I +P ++ + N + R + GI +G Sbjct: 512 IYLPNRNEPVRLNDNEPARLFLQKVRDETHRWVNTSHGKKRSREMVKSE---LEGINGLG 568 Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 + L ++++ N N + S+ +P + +A I + + Sbjct: 569 KKGIEKLYAHFINIDNI----------KNASFESIRNIPGISYKVANNIYDHFH 612 >gi|126740607|ref|ZP_01756294.1| excinuclease ABC subunit C [Roseobacter sp. SK209-2-6] gi|126718408|gb|EBA15123.1| excinuclease ABC subunit C [Roseobacter sp. SK209-2-6] Length = 622 Score = 38.6 bits (88), Expect = 4.1, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 10/89 (11%) Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 ++ + + VGA R+L ++ S A Sbjct: 543 MRDEAHRFAIGTHRAKRAKAIGATPLDEVPGVGASRKRALLAHFGS----------AKAV 592 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 + D L V + +A+ I +F+ Sbjct: 593 SRADLADLKAVEGISSALAETIYDFFHEK 621 >gi|303244918|ref|ZP_07331244.1| helicase domain protein [Methanothermococcus okinawensis IH1] gi|302484735|gb|EFL47673.1| helicase domain protein [Methanothermococcus okinawensis IH1] Length = 797 Score = 38.6 bits (88), Expect = 4.1, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 10/57 (17%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 VG A +L + + +N L V +G+I+A+ I Sbjct: 743 SFPDVGPLTAENLLMKFGTIENIVNAPE----------EELREVEGIGEIMAKKIKS 789 >gi|300768268|ref|ZP_07078173.1| ComE operon protein 1 [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494332|gb|EFK29495.1| ComE operon protein 1 [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 241 Score = 38.6 bits (88), Expect = 4.1, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 21/63 (33%) Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642 + I N D +L + +G A+ I+++ Q N ++ L K Sbjct: 176 AATDKINLNTADVAALQTLSGIGQKKAEKIIDYRQQHGNFKTIDDLKNVSGFGEKTVAKY 235 Query: 643 VSS 645 Sbjct: 236 KDQ 238 >gi|260590121|ref|ZP_05856034.1| competence protein CelA [Blautia hansenii DSM 20583] gi|260539633|gb|EEX20202.1| competence protein CelA [Blautia hansenii DSM 20583] Length = 201 Score = 38.6 bits (88), Expect = 4.1, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 13/65 (20%) Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647 I N D L +P VG+ AQ+I+E+ + +E L + Sbjct: 140 ININTADLTELQEIPGVGEKKAQSIMEYREACGGFQNIEQLQEVPGI------------- 186 Query: 648 ENKKL 652 + K Sbjct: 187 KGKTF 191 >gi|296816345|ref|XP_002848509.1| BRCT domain-containing protein [Arthroderma otae CBS 113480] gi|238838962|gb|EEQ28624.1| BRCT domain-containing protein [Arthroderma otae CBS 113480] Length = 845 Score = 38.6 bits (88), Expect = 4.1, Method: Composition-based stats. Identities = 4/42 (9%), Positives = 21/42 (50%), Gaps = 4/42 (9%) Query: 645 SEIENKKLVFT---GTLQKIQRHKAQEYVTQLGAVVSAILSR 683 + + K ++ + G +++ + ++ + + G ++ +S+ Sbjct: 239 NIFKGKTVMISADLGIAERMT-NSIEQLIVEGGGKITNQVSK 279 >gi|215404349|ref|ZP_03416530.1| hypothetical protein Mtub0_11835 [Mycobacterium tuberculosis 02_1987] gi|289758544|ref|ZP_06517922.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289714108|gb|EFD78120.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] Length = 311 Score = 38.6 bits (88), Expect = 4.1, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%) Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 A + ++ N L +P +G + A AIV + Q +V+ L Sbjct: 244 APKTAEVLDLNTATVEQLDALPGIGPVTAAAIVAWRQRNGRFTSVDQL 291 >gi|15841933|ref|NP_336970.1| hypothetical protein MT2488 [Mycobacterium tuberculosis CDC1551] gi|13882204|gb|AAK46784.1| comE operon protein 1, putative [Mycobacterium tuberculosis CDC1551] Length = 213 Score = 38.6 bits (88), Expect = 4.1, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%) Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 A + ++ N L +P +G + A AIV + Q +V+ L Sbjct: 146 APKTAEVLDLNTATVEQLDALPGIGPVTAAAIVAWRQRNGRFTSVDQL 193 >gi|31793594|ref|NP_856087.1| hypothetical protein Mb2438c [Mycobacterium bovis AF2122/97] gi|121638296|ref|YP_978520.1| hypothetical protein BCG_2431c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215427797|ref|ZP_03425716.1| hypothetical protein MtubT9_15987 [Mycobacterium tuberculosis T92] gi|215431358|ref|ZP_03429277.1| hypothetical protein MtubE_11888 [Mycobacterium tuberculosis EAS054] gi|219558410|ref|ZP_03537486.1| hypothetical protein MtubT1_14342 [Mycobacterium tuberculosis T17] gi|224990790|ref|YP_002645477.1| hypothetical protein JTY_2425 [Mycobacterium bovis BCG str. Tokyo 172] gi|260187421|ref|ZP_05764895.1| hypothetical protein MtubCP_15511 [Mycobacterium tuberculosis CPHL_A] gi|260201540|ref|ZP_05769031.1| hypothetical protein MtubT4_15842 [Mycobacterium tuberculosis T46] gi|260205718|ref|ZP_05773209.1| hypothetical protein MtubK8_15604 [Mycobacterium tuberculosis K85] gi|289443938|ref|ZP_06433682.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289448057|ref|ZP_06437801.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289570563|ref|ZP_06450790.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289575108|ref|ZP_06455335.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289751020|ref|ZP_06510398.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289754522|ref|ZP_06513900.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|31619187|emb|CAD97299.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] gi|121493944|emb|CAL72419.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224773903|dbj|BAH26709.1| hypothetical protein JTY_2425 [Mycobacterium bovis BCG str. Tokyo 172] gi|289416857|gb|EFD14097.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289421015|gb|EFD18216.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289539539|gb|EFD44117.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289544317|gb|EFD47965.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289691607|gb|EFD59036.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289695109|gb|EFD62538.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] Length = 297 Score = 38.6 bits (88), Expect = 4.1, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%) Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 A + ++ N L +P +G + A AIV + Q +V+ L Sbjct: 230 APKTAEVLDLNTATVEQLDALPGIGPVTAAAIVAWRQRNGRFTSVDQL 277 >gi|15609552|ref|NP_216931.1| hypothetical protein Rv2415c [Mycobacterium tuberculosis H37Rv] gi|148662249|ref|YP_001283772.1| hypothetical protein MRA_2440 [Mycobacterium tuberculosis H37Ra] gi|148823618|ref|YP_001288372.1| hypothetical protein TBFG_12443 [Mycobacterium tuberculosis F11] gi|167969731|ref|ZP_02552008.1| hypothetical protein MtubH3_17590 [Mycobacterium tuberculosis H37Ra] gi|215412167|ref|ZP_03420931.1| hypothetical protein Mtub9_12572 [Mycobacterium tuberculosis 94_M4241A] gi|215446660|ref|ZP_03433412.1| hypothetical protein MtubT_12219 [Mycobacterium tuberculosis T85] gi|218754144|ref|ZP_03532940.1| hypothetical protein MtubG1_12249 [Mycobacterium tuberculosis GM 1503] gi|254232553|ref|ZP_04925880.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|254365190|ref|ZP_04981236.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|254551462|ref|ZP_05141909.1| hypothetical protein Mtube_13549 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289746196|ref|ZP_06505574.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289762582|ref|ZP_06521960.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|294994477|ref|ZP_06800168.1| hypothetical protein Mtub2_08173 [Mycobacterium tuberculosis 210] gi|298525897|ref|ZP_07013306.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306776682|ref|ZP_07415019.1| hypothetical protein TMAG_02974 [Mycobacterium tuberculosis SUMu001] gi|306780456|ref|ZP_07418793.1| hypothetical protein TMBG_00958 [Mycobacterium tuberculosis SUMu002] gi|306785206|ref|ZP_07423528.1| hypothetical protein TMCG_00514 [Mycobacterium tuberculosis SUMu003] gi|306789567|ref|ZP_07427889.1| hypothetical protein TMDG_00893 [Mycobacterium tuberculosis SUMu004] gi|306793893|ref|ZP_07432195.1| hypothetical protein TMEG_02781 [Mycobacterium tuberculosis SUMu005] gi|306798289|ref|ZP_07436591.1| hypothetical protein TMFG_01379 [Mycobacterium tuberculosis SUMu006] gi|306804164|ref|ZP_07440832.1| hypothetical protein TMHG_01609 [Mycobacterium tuberculosis SUMu008] gi|306968565|ref|ZP_07481226.1| hypothetical protein TMIG_01093 [Mycobacterium tuberculosis SUMu009] gi|306972794|ref|ZP_07485455.1| hypothetical protein TMJG_00683 [Mycobacterium tuberculosis SUMu010] gi|307080499|ref|ZP_07489669.1| hypothetical protein TMKG_00677 [Mycobacterium tuberculosis SUMu011] gi|307085097|ref|ZP_07494210.1| hypothetical protein TMLG_02167 [Mycobacterium tuberculosis SUMu012] gi|308375879|ref|ZP_07445403.2| hypothetical protein TMGG_00977 [Mycobacterium tuberculosis SUMu007] gi|1655644|emb|CAB03743.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] gi|124601612|gb|EAY60622.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|134150704|gb|EBA42749.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|148506401|gb|ABQ74210.1| conserved hypothetical protein [Mycobacterium tuberculosis H37Ra] gi|148722145|gb|ABR06770.1| conserved hypothetical protein [Mycobacterium tuberculosis F11] gi|289686724|gb|EFD54212.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289710088|gb|EFD74104.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|298495691|gb|EFI30985.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308214931|gb|EFO74330.1| hypothetical protein TMAG_02974 [Mycobacterium tuberculosis SUMu001] gi|308326692|gb|EFP15543.1| hypothetical protein TMBG_00958 [Mycobacterium tuberculosis SUMu002] gi|308330120|gb|EFP18971.1| hypothetical protein TMCG_00514 [Mycobacterium tuberculosis SUMu003] gi|308333960|gb|EFP22811.1| hypothetical protein TMDG_00893 [Mycobacterium tuberculosis SUMu004] gi|308337746|gb|EFP26597.1| hypothetical protein TMEG_02781 [Mycobacterium tuberculosis SUMu005] gi|308341434|gb|EFP30285.1| hypothetical protein TMFG_01379 [Mycobacterium tuberculosis SUMu006] gi|308344930|gb|EFP33781.1| hypothetical protein TMGG_00977 [Mycobacterium tuberculosis SUMu007] gi|308349241|gb|EFP38092.1| hypothetical protein TMHG_01609 [Mycobacterium tuberculosis SUMu008] gi|308353860|gb|EFP42711.1| hypothetical protein TMIG_01093 [Mycobacterium tuberculosis SUMu009] gi|308357806|gb|EFP46657.1| hypothetical protein TMJG_00683 [Mycobacterium tuberculosis SUMu010] gi|308361751|gb|EFP50602.1| hypothetical protein TMKG_00677 [Mycobacterium tuberculosis SUMu011] gi|308365361|gb|EFP54212.1| hypothetical protein TMLG_02167 [Mycobacterium tuberculosis SUMu012] gi|323719012|gb|EGB28161.1| hypothetical protein TMMG_01707 [Mycobacterium tuberculosis CDC1551A] gi|326904032|gb|EGE50965.1| hypothetical protein TBPG_01921 [Mycobacterium tuberculosis W-148] Length = 297 Score = 38.6 bits (88), Expect = 4.1, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%) Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 A + ++ N L +P +G + A AIV + Q +V+ L Sbjct: 230 APKTAEVLDLNTATVEQLDALPGIGPVTAAAIVAWRQRNGRFTSVDQL 277 >gi|329121128|ref|ZP_08249759.1| excinuclease ABC subunit C [Dialister micraerophilus DSM 19965] gi|327471290|gb|EGF16744.1| excinuclease ABC subunit C [Dialister micraerophilus DSM 19965] Length = 457 Score = 38.6 bits (88), Expect = 4.2, Method: Composition-based stats. Identities = 6/40 (15%), Positives = 14/40 (35%) Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 +N + L +V + +A+ I F++ Sbjct: 402 KNLWAAFRTLDDMKKASVEELQKVKGINKKVAENIYNFFR 441 >gi|189209141|ref|XP_001940903.1| poly polymerase 2 ADP-ribosyltransferase 2 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187976996|gb|EDU43622.1| poly polymerase 2 ADP-ribosyltransferase 2 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 666 Score = 38.6 bits (88), Expect = 4.2, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 4/68 (5%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN----PGSKLEKAQ 702 + + +G + Q +T LGA + ++ T +I + +K+ A Sbjct: 16 LSGYNIATSGRFSGTSQTAVQSRLTALGASTALSVTSDTTHLIATEKDYESNSTKVNAAA 75 Query: 703 QLGVKIMN 710 GV ++ Sbjct: 76 THGVPVVT 83 >gi|304405665|ref|ZP_07387324.1| DNA integrity scanning, DisA, linker region [Paenibacillus curdlanolyticus YK9] gi|304345704|gb|EFM11539.1| DNA integrity scanning, DisA, linker region [Paenibacillus curdlanolyticus YK9] Length = 356 Score = 38.6 bits (88), Expect = 4.2, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 21/51 (41%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 N +++ + L V +G++ A+AI E + ++ ++ Sbjct: 304 MHNLVDRFHHLPHIVMATYEELDEVDGIGEVRARAIKEGLKRIQDQMFIDR 354 >gi|298710539|emb|CBJ25603.1| hypothetical protein Esi_0003_0311 [Ectocarpus siliculosus] Length = 1756 Score = 38.6 bits (88), Expect = 4.2, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 +V TG L+ R + + VT+LG V Sbjct: 1262 GGPFSGLGVVLTG-LRGEMRSELEASVTKLGGKVV 1295 >gi|304360722|ref|YP_003856853.1| putative DNA ligase [Clostridium phage phiCTP1] gi|302495581|gb|ADL40361.1| putative DNA ligase [Clostridium phage phiCTP1] Length = 118 Score = 38.6 bits (88), Expect = 4.3, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 28/63 (44%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 KK+ ++ + + + ++ +++ H YY+ II D+ ++ R + Sbjct: 10 KKQTEEIVQDDNSRKIYELINRRRRQMLIHSIIYYRLDANIIDDTTFNVWGRELLDLQTK 69 Query: 62 FPD 64 +P+ Sbjct: 70 YPE 72 >gi|297813705|ref|XP_002874736.1| hypothetical protein ARALYDRAFT_490014 [Arabidopsis lyrata subsp. lyrata] gi|297320573|gb|EFH50995.1| hypothetical protein ARALYDRAFT_490014 [Arabidopsis lyrata subsp. lyrata] Length = 310 Score = 38.6 bits (88), Expect = 4.3, Method: Composition-based stats. Identities = 9/21 (42%), Positives = 11/21 (52%) Query: 36 YQYSKPIILDSEYDALKRRCD 56 Y PI+ D EYD LK + Sbjct: 136 YVSGNPILSDEEYDKLKMKLK 156 >gi|123966197|ref|YP_001011278.1| excinuclease ABC subunit C [Prochlorococcus marinus str. MIT 9515] gi|123200563|gb|ABM72171.1| Excinuclease ABC subunit C (UvrC) [Prochlorococcus marinus str. MIT 9515] Length = 644 Score = 38.6 bits (88), Expect = 4.3, Method: Composition-based stats. Identities = 12/100 (12%), Positives = 29/100 (29%), Gaps = 10/100 (10%) Query: 520 STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQN 579 K +L S ++ + I +G+ + L +++ S Sbjct: 555 MNQKGVMLLRRLRDEAHRFALSFHRNKRSRRMNRSQLTQIPGLGSSRIKDLLEHFNSVDA 614 Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 L++V +G A+ I +++ Sbjct: 615 IRIASK----------EELMKVKGLGSNTAKDIYDYFNCD 644 >gi|319898416|ref|YP_004158509.1| methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [Bartonella clarridgeiae 73] gi|319402380|emb|CBI75919.1| methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [Bartonella clarridgeiae 73] Length = 299 Score = 38.6 bits (88), Expect = 4.4, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 14/54 (25%) Query: 689 IVGDNP------GSKLEKAQQ---LGVK-IMN----EEQFLFLLQQYNTTLRIH 728 IVGD+P SK +KA++ L +K +M+ E++ L L++ N+ +IH Sbjct: 39 IVGDDPASQIYVSSKSKKAEECGFLSIKHVMSKETQEKELLKLIETLNSDPKIH 92 >gi|307266005|ref|ZP_07547552.1| excinuclease ABC, C subunit [Thermoanaerobacter wiegelii Rt8.B1] gi|306918967|gb|EFN49194.1| excinuclease ABC, C subunit [Thermoanaerobacter wiegelii Rt8.B1] Length = 615 Score = 38.6 bits (88), Expect = 4.4, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 29/87 (33%), Gaps = 10/87 (11%) Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 + + ++ S I +G + A++L + S + Sbjct: 538 QIQEEAHRFAITFHKKKQSKRFKSELFNIPGIGEKRAKALYDAFKSIEEIRSA------- 590 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 L +V + + AQA+ E+++ Sbjct: 591 ---SLEDLKKVKGMNEKAAQAVYEYFR 614 >gi|299535125|ref|ZP_07048450.1| glutamate dehydrogenase [Lysinibacillus fusiformis ZC1] gi|298729442|gb|EFI69992.1| glutamate dehydrogenase [Lysinibacillus fusiformis ZC1] Length = 457 Score = 38.6 bits (88), Expect = 4.4, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 6/46 (13%) Query: 635 SIGRHEKNVSSEIENKKLVFTGT--LQKIQRHKAQEYVTQLGAVVS 678 + K+ + E K +V +G+ + A E Q GA V Sbjct: 228 FVNEMLKDANDSFEGKTVVVSGSGNVSTY----AIEKAQQYGAKVV 269 >gi|255262958|ref|ZP_05342300.1| excinuclease ABC, C subunit [Thalassiobium sp. R2A62] gi|255105293|gb|EET47967.1| excinuclease ABC, C subunit [Thalassiobium sp. R2A62] Length = 630 Score = 38.6 bits (88), Expect = 4.4, Method: Composition-based stats. Identities = 11/88 (12%), Positives = 25/88 (28%), Gaps = 10/88 (11%) Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 ++ + + VGA R+L ++ S A Sbjct: 551 MRDEAHRFAIGTHRAKRSKAIGATPLDDVPGVGATRKRALLAHFGS----------AKAV 600 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 + L V + +A+ I +++ Sbjct: 601 GRANLADLKAVDGISSAMAETIYDYFHE 628 >gi|126654160|ref|ZP_01725973.1| glutamate dehydrogenase [Bacillus sp. B14905] gi|126589368|gb|EAZ83520.1| glutamate dehydrogenase [Bacillus sp. B14905] Length = 462 Score = 38.6 bits (88), Expect = 4.4, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 6/46 (13%) Query: 635 SIGRHEKNVSSEIENKKLVFTGT--LQKIQRHKAQEYVTQLGAVVS 678 + K+ + E K +V +G+ + A E Q GA V Sbjct: 233 FVNEMLKDANDSFEGKTVVVSGSGNVSTY----AIEKAQQYGAKVV 274 >gi|269792117|ref|YP_003317021.1| helicase, RecD/TraA family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099752|gb|ACZ18739.1| helicase, RecD/TraA family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 715 Score = 38.2 bits (87), Expect = 4.4, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 38/123 (30%), Gaps = 10/123 (8%) Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 + + + +G L R++ S I VG AR + Sbjct: 42 LPMAGERLVMEGRWTVHRRYGRQFCAEDVRMAMPSSLEGLVRYLSSGVIPKVGPSTARRI 101 Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV-EFYQNPRNICAVEALL 629 +++ + ++ L+ +P +G + + + ++ R AV LL Sbjct: 102 VEHFK---------EETLDVLDNRVERLLEIPGIGPKRVEEVRLHWEEHRRRRQAVLQLL 152 Query: 630 KEV 632 Sbjct: 153 DFG 155 >gi|57222286|ref|NP_001009548.1| testase-8 [Mus musculus] gi|33186792|tpe|CAD66451.1| TPA: testase-8 [Mus musculus] gi|74221617|dbj|BAE21514.1| unnamed protein product [Mus musculus] Length = 760 Score = 38.2 bits (87), Expect = 4.4, Method: Composition-based stats. Identities = 41/411 (9%), Positives = 81/411 (19%), Gaps = 39/411 (9%) Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218 ++ + I + Y +F + Sbjct: 353 IAHEIGHNLGMEHDSSSCTCGGINYCLM--SSTYSFNPEFSNCSYSNFWTTY-------- 402 Query: 219 AASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV---------- 268 A + LR+ + + F +G+ E G M ++ +C Sbjct: 403 ATTNCLRKEKMSIGNLQIQFCGNGVVDDGEQCDCGDRHMCERDQCCNSRCALNDGAACAF 462 Query: 269 ---------NNGVRQANTFHGIVSYYNEMKSIRSTLP---YDIDGLVYKVDEFSLQKQLG 316 P Y +DG + + +K+ Sbjct: 463 GLCCLYCQIMPAGTVCREEVNECDLPEWCNGHSHKCPNDVYLLDGSPCRDGGYCYEKRCN 522 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT-PVARLEPVNIGGALITNATLHN 375 R I K A + +++ Q R G + L N Sbjct: 523 NRDEQ-CKQIFGKEARSADHSCYRELNTQGDRFGNCGMIRDAYLRCHDSDILCGRVQCEN 581 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 I L V + V G IP + + Sbjct: 582 VTRIPFLRDHSTVHWTHLN-GVTCWGTDYHFGMTIPDIGIVKDGTDCGPEHVCINKKCV- 639 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 S+ + + C C + H + G + Sbjct: 640 ---SKPIWLEQCSSKTCTMKGVCNNLHHCHCNRGWDPPHCLESGFGGSVDSGPPPGEEES 696 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 + I I +L + + + + Sbjct: 697 QQHMDLVLITPILSIVSLVFLLPWLLNRYIRTSSKFEEPTVSTSKEEEESH 747 >gi|269959093|ref|YP_003328882.1| methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase [Anaplasma centrale str. Israel] gi|269848924|gb|ACZ49568.1| methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase [Anaplasma centrale str. Israel] Length = 299 Score = 38.2 bits (87), Expect = 4.4, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 14/55 (25%) Query: 688 IIVGDNPGSKL------EKAQQLGV--KIM------NEEQFLFLLQQYNTTLRIH 728 +IVGD+P SKL KA++LG+ + + ++E+ L ++ + N +H Sbjct: 38 VIVGDDPASKLYVGNKQRKAEELGLQSRTIALEHDTSQEELLRIIDELNRDAAVH 92 >gi|56416494|ref|YP_153568.1| methylenetetrahydrofolate dehydrogenase [Anaplasma marginale str. St. Maries] gi|222474863|ref|YP_002563278.1| methylenetetrahydrofolate dehydrogenase (folD) [Anaplasma marginale str. Florida] gi|254994718|ref|ZP_05276908.1| methylenetetrahydrofolate dehydrogenase (folD) [Anaplasma marginale str. Mississippi] gi|255002832|ref|ZP_05277796.1| methylenetetrahydrofolate dehydrogenase (folD) [Anaplasma marginale str. Puerto Rico] gi|81359278|sp|Q5PBL6|FOLD_ANAMM RecName: Full=Bifunctional protein FolD; Includes: RecName: Full=Methylenetetrahydrofolate dehydrogenase; Includes: RecName: Full=Methenyltetrahydrofolate cyclohydrolase gi|56387726|gb|AAV86313.1| methylenetetrahydrofolate dehydrogenase [Anaplasma marginale str. St. Maries] gi|222418999|gb|ACM49022.1| methylenetetrahydrofolate dehydrogenase (folD) [Anaplasma marginale str. Florida] Length = 299 Score = 38.2 bits (87), Expect = 4.4, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 14/55 (25%) Query: 688 IIVGDNPGSKL------EKAQQLGV--KIM------NEEQFLFLLQQYNTTLRIH 728 +IVGD+P SKL KA++LG+ + + ++E+ L ++ + N +H Sbjct: 38 VIVGDDPASKLYVGNKQRKAEELGLQSRTIALEHDTSQEELLRIIDELNRDAAVH 92 >gi|310830491|ref|YP_003965592.1| Helicase RecD/TraA [Paenibacillus polymyxa SC2] gi|309249958|gb|ADO59524.1| Helicase RecD/TraA [Paenibacillus polymyxa SC2] Length = 749 Score = 38.2 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 9/64 (14%) Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEA---LLKEVSPSIGRHEKNVSSEIENK------K 651 V +G AQ IV+++ E LL+ S R + ++K Sbjct: 101 VKGIGKKTAQKIVDYFGEEALKRIEEDHRSLLQVGGISEVRAKAIQDKLFKHKRFEDVGT 160 Query: 652 LVFT 655 V + Sbjct: 161 FVLS 164 >gi|298675601|ref|YP_003727351.1| ERCC4 domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298288589|gb|ADI74555.1| ERCC4 domain protein [Methanohalobium evestigatum Z-7303] Length = 759 Score = 38.2 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 10/56 (17%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 I +G ARSL KY+ S +N + ++ L L+G A I E Sbjct: 706 ISDIGPRAARSLLKYFGSVENIMKA----------NYEELQEAELIGPKTASKIRE 751 >gi|291550744|emb|CBL27006.1| excinuclease ABC, C subunit [Ruminococcus torques L2-14] Length = 617 Score = 38.2 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 10/61 (16%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I +G ++L ++YLS L ++P + + A+++ +F+ Sbjct: 567 DIEGIGPARRKALMRHYLSLDAIRSAT----------VEELAQLPSMNEKAAESVYQFFH 616 Query: 618 N 618 + Sbjct: 617 D 617 >gi|257898720|ref|ZP_05678373.1| competence protein ComEA [Enterococcus faecium Com15] gi|257836632|gb|EEV61706.1| competence protein ComEA [Enterococcus faecium Com15] Length = 225 Score = 38.2 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 7/66 (10%) Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647 I N L ++P +G + AQ I+ F + + VE L + EK Sbjct: 164 ININTASPSELQQIPGIGSVKAQEIIRFREENGSFQKVEDLQEISGIGEKTVEKL----- 218 Query: 648 ENKKLV 653 K V Sbjct: 219 --KNFV 222 >gi|283769391|ref|ZP_06342290.1| comEA protein [Bulleidia extructa W1219] gi|283104048|gb|EFC05432.1| comEA protein [Bulleidia extructa W1219] Length = 151 Score = 38.2 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 30/74 (40%) Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632 + ++ + I+ N D L+++ VG +AQ I+E+ + +E L K Sbjct: 76 HDGDVLFLNSKVPSKISLNEADLKELMKLKGVGKKMAQRILEYRKEKGLFQKLEDLQKVK 135 Query: 633 SPSIGRHEKNVSSE 646 ++E+ Sbjct: 136 GIGDKKYEELKDQI 149 >gi|168187709|ref|ZP_02622344.1| DNA integrity scanning protein DisA [Clostridium botulinum C str. Eklund] gi|169294434|gb|EDS76567.1| DNA integrity scanning protein DisA [Clostridium botulinum C str. Eklund] Length = 355 Score = 38.2 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 7/44 (15%), Positives = 15/44 (34%) Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 + + L V +G+ A+AI + R ++ Sbjct: 310 FKELKEVMEASYEELDNVEGIGEARAKAIKNGLRRLREQFMIDK 353 >gi|86607132|ref|YP_475895.1| DNA protecting protein DprA [Synechococcus sp. JA-3-3Ab] gi|86555674|gb|ABD00632.1| DNA protecting protein DprA [Synechococcus sp. JA-3-3Ab] Length = 381 Score = 38.2 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 10/62 (16%) Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 ++ I+ +G + LA+++ S + D L L +V +G +AQAI Sbjct: 26 WLAWAQIKGIGPHRLKRLAEFFGSLK----------QAWQADALDLQQVEGIGPTLAQAI 75 Query: 613 VE 614 V Sbjct: 76 VS 77 >gi|326389756|ref|ZP_08211321.1| excinuclease ABC, C subunit [Thermoanaerobacter ethanolicus JW 200] gi|325994238|gb|EGD52665.1| excinuclease ABC, C subunit [Thermoanaerobacter ethanolicus JW 200] Length = 615 Score = 38.2 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 10/62 (16%) Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 L I +G + A++L + S + + L +V + + AQA+ E+ Sbjct: 563 LLNIPGIGEKRAKALYDAFKSIEEIKRA----------SVEDLKKVEGMNEKAAQAVYEY 612 Query: 616 YQ 617 ++ Sbjct: 613 FR 614 Score = 37.5 bits (85), Expect = 8.3, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 2/36 (5%) Query: 597 SLIRVPLVGDIIAQAIVEFYQ--NPRNICAVEALLK 630 L+ +P +G+ A+A+ + ++ +VE L K Sbjct: 562 ELLNIPGIGEKRAKALYDAFKSIEEIKRASVEDLKK 597 >gi|86139077|ref|ZP_01057648.1| UvrABC system protein C [Roseobacter sp. MED193] gi|85824308|gb|EAQ44512.1| UvrABC system protein C [Roseobacter sp. MED193] Length = 643 Score = 38.2 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 10/82 (12%) Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 ++ + + VGA R+L K++ S A + D Sbjct: 569 HRFAIGTHRAKRAKAVGATPLDEVPGVGAGRKRALLKHFGS----------AKAVSRADL 618 Query: 596 LSLIRVPLVGDIIAQAIVEFYQ 617 L L V + + +A+ I +F+ Sbjct: 619 LDLKAVDGISNALAETIYDFFH 640 >gi|256750641|ref|ZP_05491527.1| excinuclease ABC, C subunit [Thermoanaerobacter ethanolicus CCSD1] gi|256750481|gb|EEU63499.1| excinuclease ABC, C subunit [Thermoanaerobacter ethanolicus CCSD1] Length = 615 Score = 38.2 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 10/62 (16%) Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 L I +G + A++L + S + + L +V + + AQA+ E+ Sbjct: 563 LLNIPGIGEKRAKALYDAFKSIEEIKRA----------SVEDLKKVEGMNEKAAQAVYEY 612 Query: 616 YQ 617 ++ Sbjct: 613 FR 614 Score = 37.9 bits (86), Expect = 7.2, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 3/72 (4%) Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ--N 618 + ++ R +A+ FA + L+ +P +G+ A+A+ + ++ Sbjct: 527 PMTSKAFRLIAQIQEEAHRFAITFHKEKQSKRFK-SELLNIPGIGEKRAKALYDAFKSIE 585 Query: 619 PRNICAVEALLK 630 +VE L K Sbjct: 586 EIKRASVEDLKK 597 >gi|14250931|emb|CAC39227.1| UvrC protein [Eubacterium acidaminophilum] Length = 607 Score = 38.2 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 10/51 (19%) Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 L ++ S +N L + + +A+ I F++ Sbjct: 561 LLISHFRSVENIRNA----------KLEELKAISGISAEVAERIYMFFREE 601 >gi|152976757|ref|YP_001376274.1| helix-hairpin-helix repeat-containing competence protein ComEA [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025509|gb|ABS23279.1| competence protein ComEA helix-hairpin-helix repeat protein [Bacillus cytotoxicus NVH 391-98] Length = 200 Score = 38.2 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 22/59 (37%) Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 I+ N L + +G A+AI+++ + +E LL+ EK Sbjct: 139 ISINQASKEQLENITGIGPRKAEAIIKYREEHGAFQKIEDLLEIDGIGEKSLEKMKDQI 197 >gi|330789686|ref|XP_003282930.1| hypothetical protein DICPUDRAFT_146505 [Dictyostelium purpureum] gi|325087214|gb|EGC40594.1| hypothetical protein DICPUDRAFT_146505 [Dictyostelium purpureum] Length = 457 Score = 38.2 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 8/29 (27%), Positives = 14/29 (48%) Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 + ++ V G ++KTD +IV N Sbjct: 118 EIKDIVKMCGGKFVDDFTKKTDYLIVKPN 146 >gi|294632854|ref|ZP_06711413.1| short-chain dehydrogenase/reductase family oxidoreductase [Streptomyces sp. e14] gi|292830635|gb|EFF88985.1| short-chain dehydrogenase/reductase family oxidoreductase [Streptomyces sp. e14] Length = 549 Score = 38.2 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 2/71 (2%) Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G +A+ I EF + A +AL K ++E K +V TG I R Sbjct: 240 GTTVARMIREFAAHQEGAPATDALAKA-QTGRADRPAGEAAEFAGKLVVVTGAGSGIGRA 298 Query: 665 KAQEYVTQLGA 675 A + GA Sbjct: 299 TALAFAE-RGA 308 >gi|196248984|ref|ZP_03147684.1| competence protein ComEA helix-hairpin-helix repeat protein [Geobacillus sp. G11MC16] gi|196211860|gb|EDY06619.1| competence protein ComEA helix-hairpin-helix repeat protein [Geobacillus sp. G11MC16] Length = 203 Score = 38.2 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%) Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 A N L++VP +G A+AI+ + + VE LL+ EK Sbjct: 143 AVNTATAEELMQVPGIGPAKAKAIIAYREEHGPFQRVEDLLRVNGIGEKTLEK 195 >gi|138896090|ref|YP_001126543.1| late competence protein ComEA [Geobacillus thermodenitrificans NG80-2] gi|134267603|gb|ABO67798.1| Late competence protein ComEA [Geobacillus thermodenitrificans NG80-2] Length = 203 Score = 38.2 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%) Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 A N L++VP +G A+AI+ + + VE LL+ EK Sbjct: 143 AVNTATAEELMQVPGIGPAKAKAIIAYREEHGPFQRVEDLLRVNGIGEKTLEK 195 >gi|118443584|ref|YP_877173.1| DNA integrity scanning protein DisA [Clostridium novyi NT] gi|118134040|gb|ABK61084.1| Domain of unknown function DUF147 family protein [Clostridium novyi NT] Length = 355 Score = 38.2 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 7/44 (15%), Positives = 15/44 (34%) Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 + + L V +G+ A+AI + R ++ Sbjct: 310 FKELKEVMEASYEELDNVEGIGEARAKAIKNGLRRLREQFMIDK 353 >gi|167036996|ref|YP_001664574.1| excinuclease ABC subunit C [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115414|ref|YP_004185573.1| excinuclease ABC subunit C [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|229557871|sp|B0K791|UVRC_THEP3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|166855830|gb|ABY94238.1| excinuclease ABC, C subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928505|gb|ADV79190.1| excinuclease ABC, C subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 615 Score = 38.2 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 10/62 (16%) Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 L I +G + A++L + S + + L +V + + AQA+ E+ Sbjct: 563 LLNIPGIGEKRAKALYDAFKSIEEIKRA----------SVEDLKKVEGMNEKAAQAVYEY 612 Query: 616 YQ 617 ++ Sbjct: 613 FR 614 Score = 37.9 bits (86), Expect = 7.3, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 3/72 (4%) Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ--N 618 + ++ R +A+ FA + L+ +P +G+ A+A+ + ++ Sbjct: 527 PMTSKAFRLIAQIQEEAHRFAITFHKEKQSKRFK-SELLNIPGIGEKRAKALYDAFKSIE 585 Query: 619 PRNICAVEALLK 630 +VE L K Sbjct: 586 EIKRASVEDLKK 597 >gi|331028105|ref|YP_004421819.1| hypothetical protein RDJLphi1_gp51 [Roseobacter phage RDJL Phi 1] gi|301341568|gb|ADK73452.1| hypothetical protein RDJLphi1_gp51 [Roseobacter phage RDJL Phi 1] Length = 127 Score = 38.2 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 7/44 (15%), Positives = 20/44 (45%), Gaps = 4/44 (9%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKR----RCDAIAH 60 + +++ YY+ + +I D+E+D+L + + + Sbjct: 5 IDLKARQVIMASWLYYEKNVSLISDAEFDSLCKVVAAELEWLDA 48 >gi|311743010|ref|ZP_07716818.1| helix-hairpin-helix repeat-containing competence protein ComEA [Aeromicrobium marinum DSM 15272] gi|311313690|gb|EFQ83599.1| helix-hairpin-helix repeat-containing competence protein ComEA [Aeromicrobium marinum DSM 15272] Length = 253 Score = 38.2 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 18/41 (43%) Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629 N L +P VG + A++I+ + +V+ LL Sbjct: 194 NLNTATAADLDELPGVGPVTAESILTWRAENGRFTSVDDLL 234 >gi|123187370|gb|ABM69262.1| unknown [Aeromonas hydrophila] Length = 106 Score = 38.2 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 20/56 (35%) Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 N + L + +G+ AQAIV+F + VE L E N Sbjct: 46 NLNTANINELTALKGIGEKKAQAIVDFREKQGKFTTVEQLADVSGIGPATLEANRD 101 >gi|158312222|ref|YP_001504730.1| DNA integrity scanning protein DisA [Frankia sp. EAN1pec] gi|226729442|sp|A8LF79|DISA_FRASN RecName: Full=DNA integrity scanning protein disA gi|158107627|gb|ABW09824.1| protein of unknown function DUF147 [Frankia sp. EAN1pec] Length = 359 Score = 38.2 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 10/82 (12%) Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R IS + + + + L ++ + Q L V VG Sbjct: 286 RQISPRGYRMLAKVPRLPRMVVDRLVDHFSTLQKLLAA----------GVDDLQAVDGVG 335 Query: 606 DIIAQAIVEFYQNPRNICAVEA 627 + A+A+ E +E Sbjct: 336 ETRARAVREGLSRLAESSILER 357 >gi|332657675|gb|AEE83075.1| PGR5-like protein 1B [Arabidopsis thaliana] Length = 296 Score = 38.2 bits (87), Expect = 4.9, Method: Composition-based stats. Identities = 9/21 (42%), Positives = 11/21 (52%) Query: 36 YQYSKPIILDSEYDALKRRCD 56 Y PI+ D EYD LK + Sbjct: 122 YVSGNPILSDEEYDKLKMKLK 142 >gi|308071005|ref|YP_003872610.1| hypothetical protein PPE_04308 [Paenibacillus polymyxa E681] gi|305860284|gb|ADM72072.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 358 Score = 38.2 bits (87), Expect = 4.9, Method: Composition-based stats. Identities = 7/51 (13%), Positives = 16/51 (31%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 N + L V +G++ A+ I E + + ++ Sbjct: 306 IHNLVERFGRFPHVITATIEELDEVDGIGEVRARTIKEGLKRLQEQVFIDR 356 >gi|258517046|ref|YP_003193268.1| excinuclease ABC subunit C [Desulfotomaculum acetoxidans DSM 771] gi|257780751|gb|ACV64645.1| excinuclease ABC, C subunit [Desulfotomaculum acetoxidans DSM 771] Length = 624 Score = 38.2 bits (87), Expect = 4.9, Method: Composition-based stats. Identities = 16/147 (10%), Positives = 44/147 (29%), Gaps = 14/147 (9%) Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 +S ++ LG + F ++ + R + ++ + Sbjct: 492 LSAARSVMQELGFAHIPAFGLAKQEELLFKEGEKEPVFLPRDSHALYLVQRLRDEAHRFA 551 Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 + + +RN+ + +G + R L K + S ++ ++ Sbjct: 552 VTYHRQLRSKRNLKS----LLDEVDGIGPKRRRELLKAFGSLEDISRAGLG--------- 598 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNI 622 L V + A+A+ ++ Sbjct: 599 -ELSAVEGMNKKAAEAVYNYFHQKEEK 624 >gi|167039707|ref|YP_001662692.1| excinuclease ABC subunit C [Thermoanaerobacter sp. X514] gi|300915044|ref|ZP_07132359.1| excinuclease ABC, C subunit [Thermoanaerobacter sp. X561] gi|307724967|ref|YP_003904718.1| excinuclease ABC subunit C [Thermoanaerobacter sp. X513] gi|229557872|sp|B0K680|UVRC_THEPX RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|166853947|gb|ABY92356.1| excinuclease ABC, C subunit [Thermoanaerobacter sp. X514] gi|300888768|gb|EFK83915.1| excinuclease ABC, C subunit [Thermoanaerobacter sp. X561] gi|307582028|gb|ADN55427.1| excinuclease ABC, C subunit [Thermoanaerobacter sp. X513] Length = 615 Score = 38.2 bits (87), Expect = 4.9, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 10/62 (16%) Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 L I +G + A++L + S + + L +V + + AQA+ E+ Sbjct: 563 LLNIPGIGKKRAKALYDAFKSIEEIKRA----------SVEDLKKVEGMNEKAAQAVYEY 612 Query: 616 YQ 617 ++ Sbjct: 613 FR 614 >gi|295133972|ref|YP_003584648.1| NAD-dependent DNA ligase [Zunongwangia profunda SM-A87] gi|294981987|gb|ADF52452.1| NAD-dependent DNA ligase [Zunongwangia profunda SM-A87] Length = 148 Score = 38.2 bits (87), Expect = 4.9, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 14/121 (11%) Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+ +P +I + + + + E KK+VF G L + + Sbjct: 24 HFFNSPEDI-------SHTMEKDTKADSEIENGFEGKKVVFDGELDAYIEENIKNELRNK 76 Query: 674 GAVVSAILSRKTDIIIVGDNPGSK----LEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729 A+V ++ T+ +I G NP +E+A+ LGV I NE + + + T L Sbjct: 77 HAIVEDKMAEDTNFLITGKNP---DWLVVEEAKDLGVTIFNEMDWQNTVHKIETNLSAET 133 Query: 730 D 730 Sbjct: 134 K 134 >gi|110834601|ref|YP_693460.1| ComEA-like protein [Alcanivorax borkumensis SK2] gi|110647712|emb|CAL17188.1| ComEA-related protein [Alcanivorax borkumensis SK2] Length = 107 Score = 38.2 bits (87), Expect = 4.9, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 22/60 (36%) Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647 I N D L ++ VG AQAI++F + + LL EK + Sbjct: 46 INLNTADITELEKLNGVGPKTAQAIIDFRNAQGGFTSPDQLLAIKGIGEKTLEKMRDQIV 105 >gi|86608165|ref|YP_476927.1| DNA protecting protein DprA [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556707|gb|ABD01664.1| DNA protecting protein DprA [Synechococcus sp. JA-2-3B'a(2-13)] Length = 385 Score = 38.2 bits (87), Expect = 4.9, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 10/90 (11%) Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 ++ I+ +G + LA+++ S + D +L +V +G +AQAI Sbjct: 30 WLAWARIKGIGPHRLKRLAEFFGSLER----------AWQADAPALRQVEGIGPTLAQAI 79 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKN 642 V +E LK P + + + Sbjct: 80 VSARPGLDPEQILEETLKAGIPFLTPADPD 109 >gi|289434764|ref|YP_003464636.1| DNA-binding protein, ComEA family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171008|emb|CBH27550.1| DNA-binding protein, ComEA family [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 202 Score = 38.2 bits (87), Expect = 4.9, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 22/60 (36%) Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 + I N L VP +G+ A AI+E+ + +E L K EK Sbjct: 135 ETTEEKININTASTSDLQTVPGIGESKATAIIEYREKEGLFQTIEDLQKVTGIGEKTIEK 194 >gi|253826950|ref|ZP_04869835.1| hypothetical protein HCAN_0297 [Helicobacter canadensis MIT 98-5491] gi|253510356|gb|EES89015.1| hypothetical protein HCAN_0297 [Helicobacter canadensis MIT 98-5491] Length = 82 Score = 38.2 bits (87), Expect = 4.9, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 27/64 (42%), Gaps = 5/64 (7%) Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 + L +L+ ++ N + L+ + +G+ AQAI+++ + +++ Sbjct: 1 MKLLVALFLALSFLFGAVD----LNKANKEELMSIKGIGEAKAQAIIDY-REKTPFKSID 55 Query: 627 ALLK 630 L Sbjct: 56 DLKN 59 >gi|293571939|ref|ZP_06682953.1| ComE operon protein 1 [Enterococcus faecium E980] gi|291607957|gb|EFF37265.1| ComE operon protein 1 [Enterococcus faecium E980] Length = 192 Score = 38.2 bits (87), Expect = 5.0, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 7/66 (10%) Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647 I N L ++P +G + AQ I+ F + + VE L + EK Sbjct: 131 ININTASPSELQQIPGIGSVKAQEIIRFREENGSFQKVEDLQEISGIGEKTVEKL----- 185 Query: 648 ENKKLV 653 K V Sbjct: 186 --KNFV 189 >gi|229165072|ref|ZP_04292867.1| DNA integrity scanning protein disA [Bacillus cereus AH621] gi|228618335|gb|EEK75365.1| DNA integrity scanning protein disA [Bacillus cereus AH621] Length = 347 Score = 38.2 bits (87), Expect = 5.0, Method: Composition-based stats. Identities = 18/184 (9%), Positives = 50/184 (27%), Gaps = 15/184 (8%) Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 + + + + + + + ++ + Q + E Sbjct: 162 TNLGILEFEEVVTMSEVVHVLHSVEMVLRIKNEIVSYIHELGTEGRLIRLQLTELLADLE 221 Query: 499 -DPAFSIRIPADIFTLQRRQQ----TSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + A I+ T Q + + V + ++ +++ + Sbjct: 222 AEAALLIKDYYQEKTQDHHQILKKLQDLANTQLLEDSDLVKLLGYPGQMSLEESVTPRGY 281 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + I V I +L + + Q + L V +G++ A+ I Sbjct: 282 RIASKISRVPPLIIENLINRFKTLQGVCRAT----------INELDDVEGIGEVRAKKIR 331 Query: 614 EFYQ 617 E + Sbjct: 332 EGLK 335 >gi|78044921|ref|YP_359263.1| competence protein [Carboxydothermus hydrogenoformans Z-2901] gi|77997036|gb|ABB15935.1| competence protein [Carboxydothermus hydrogenoformans Z-2901] Length = 204 Score = 38.2 bits (87), Expect = 5.0, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 19/60 (31%) Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 + N L +P VG A I+E+ + +E L K + E Sbjct: 140 EAKVNINTATAEELDELPGVGPATAAKIIEYREQNGPFATIEDLKKVKGIGDKKFETLKD 199 >gi|313891874|ref|ZP_07825479.1| excinuclease ABC, C subunit [Dialister microaerophilus UPII 345-E] gi|313119868|gb|EFR43055.1| excinuclease ABC, C subunit [Dialister microaerophilus UPII 345-E] Length = 617 Score = 38.2 bits (87), Expect = 5.1, Method: Composition-based stats. Identities = 6/40 (15%), Positives = 14/40 (35%) Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 +N + L +V + +A+ I F++ Sbjct: 562 KNLWAAFRTLDEMKKASVEELQKVKGINKKVAENIYNFFR 601 >gi|300871639|ref|YP_003786512.1| excinuclease ABC subunit C [Brachyspira pilosicoli 95/1000] gi|300689340|gb|ADK32011.1| excinuclease ABC, C subunit [Brachyspira pilosicoli 95/1000] Length = 610 Score = 38.2 bits (87), Expect = 5.2, Method: Composition-based stats. Identities = 13/114 (11%), Positives = 31/114 (27%), Gaps = 13/114 (11%) Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563 I +P +Q + N + R + I +G Sbjct: 509 IYLPNRETPVQLNDNEPARLFLQKVRDETHRWVNTSHGRKRSREMVKSE---LEKIEGLG 565 Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 + L ++++ N N ++ +P + +A I ++ Sbjct: 566 KKGIEKLYSHFINIDNI----------KNASLDNIANIPGISYKVANNIYNYFH 609 >gi|255645443|gb|ACU23217.1| unknown [Glycine max] Length = 321 Score = 38.2 bits (87), Expect = 5.2, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 12/21 (57%) Query: 36 YQYSKPIILDSEYDALKRRCD 56 Y KPI+ D E+D LK R Sbjct: 147 YVSGKPIMSDKEFDELKLRLK 167 >gi|116074853|ref|ZP_01472114.1| excinuclease ABC subunit C [Synechococcus sp. RS9916] gi|116068075|gb|EAU73828.1| excinuclease ABC subunit C [Synechococcus sp. RS9916] Length = 656 Score = 38.2 bits (87), Expect = 5.2, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 10/60 (16%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I +G + R L ++ S L P VG +AQ I +++ Sbjct: 589 DIPGLGPKRIRDLLAHFNSIDAIQLA----------SVDQLSVAPGVGPSLAQQIRDYFH 638 >gi|50914521|ref|YP_060493.1| COME operon protein 1 [Streptococcus pyogenes MGAS10394] gi|50903595|gb|AAT87310.1| COME operon protein 1 [Streptococcus pyogenes MGAS10394] Length = 220 Score = 38.2 bits (87), Expect = 5.2, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 18/58 (31%) Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647 N L +P +G AQ I++ A+E L + EK Sbjct: 161 INKASLEELQHIPGIGAKRAQDIIDMRDKLGGFKALEDLRQASGIGEKTLEKLKDDIF 218 >gi|261207706|ref|ZP_05922391.1| competence protein ComEA [Enterococcus faecium TC 6] gi|260078089|gb|EEW65795.1| competence protein ComEA [Enterococcus faecium TC 6] Length = 211 Score = 38.2 bits (87), Expect = 5.3, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 7/66 (10%) Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647 I N L ++P +G + AQ I+ F + + VE L + EK Sbjct: 150 ININTATPSELQQIPGIGSVKAQEIIRFREENGSFQKVEDLQEISGIGEKTVEKL----- 204 Query: 648 ENKKLV 653 K V Sbjct: 205 --KNFV 208 >gi|168483024|ref|ZP_02707976.1| competence protein CelA [Streptococcus pneumoniae CDC1873-00] gi|172043553|gb|EDT51599.1| competence protein CelA [Streptococcus pneumoniae CDC1873-00] gi|332201420|gb|EGJ15490.1| comEA family protein [Streptococcus pneumoniae GA47368] Length = 216 Score = 38.2 bits (87), Expect = 5.3, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 38/101 (37%) Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 ++++L + + + +V + ++++ S + + N L +V Sbjct: 111 DSKSLNLAQKVSDEALVYVPTKGEEAVSQQTGSGTASSTSKEKKVNLNKASLEELKQVKG 170 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 +G AQ I+++ + +V+ L K EK Sbjct: 171 LGGKRAQDIIDYREANGKFKSVDELKKVSGIGAKTIEKLKD 211 >gi|328883258|emb|CCA56497.1| DNA integrity scanning protein disA [Streptomyces venezuelae ATCC 10712] Length = 352 Score = 38.2 bits (87), Expect = 5.4, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 10/69 (14%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 + + I L +++ Q L V VG+ A+++ E Sbjct: 292 VPRLPGAIIERLVEHFGGLQKLLAA----------SVDDLQTVDGVGEARARSVREGLSR 341 Query: 619 PRNICAVEA 627 +E Sbjct: 342 LAESSILER 350 >gi|302535146|ref|ZP_07287488.1| DNA-binding protein [Streptomyces sp. C] gi|302444041|gb|EFL15857.1| DNA-binding protein [Streptomyces sp. C] Length = 374 Score = 38.2 bits (87), Expect = 5.4, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 10/69 (14%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 + + I L +++ Q L V VG+ A+++ E Sbjct: 314 VPRLPGAIIERLVEHFGGLQKLLAA----------SVDDLQTVDGVGEARARSVREGLSR 363 Query: 619 PRNICAVEA 627 +E Sbjct: 364 LAESSILER 372 >gi|282866879|ref|ZP_06275913.1| protein of unknown function DUF147 [Streptomyces sp. ACTE] gi|282558278|gb|EFB63846.1| protein of unknown function DUF147 [Streptomyces sp. ACTE] Length = 352 Score = 38.2 bits (87), Expect = 5.4, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 10/69 (14%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 + + I L +++ Q L V VG+ A+++ E Sbjct: 292 VPRLPGAIIERLVEHFGGLQKLLAA----------SVDDLQTVDGVGEARARSVREGLSR 341 Query: 619 PRNICAVEA 627 +E Sbjct: 342 LAESSILER 350 >gi|239942184|ref|ZP_04694121.1| DNA integrity scanning protein DisA [Streptomyces roseosporus NRRL 15998] gi|239988650|ref|ZP_04709314.1| DNA integrity scanning protein DisA [Streptomyces roseosporus NRRL 11379] gi|291445638|ref|ZP_06585028.1| DNA integrity scanning protein disA [Streptomyces roseosporus NRRL 15998] gi|291348585|gb|EFE75489.1| DNA integrity scanning protein disA [Streptomyces roseosporus NRRL 15998] Length = 374 Score = 38.2 bits (87), Expect = 5.4, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 10/69 (14%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 + + I L +++ Q L V VG+ A+++ E Sbjct: 314 VPRLPGAIIERLVEHFGGLQKLLAA----------SVDDLQTVDGVGEARARSVREGLSR 363 Query: 619 PRNICAVEA 627 +E Sbjct: 364 LAESSILER 372 >gi|254386483|ref|ZP_05001786.1| DNA-binding protein [Streptomyces sp. Mg1] gi|194345331|gb|EDX26297.1| DNA-binding protein [Streptomyces sp. Mg1] Length = 374 Score = 38.2 bits (87), Expect = 5.4, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 10/69 (14%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 + + I L +++ Q L V VG+ A+++ E Sbjct: 314 VPRLPGAIIERLVEHFGGLQKLLAA----------SVDDLQTVDGVGEARARSVREGLSR 363 Query: 619 PRNICAVEA 627 +E Sbjct: 364 LAESSILER 372 >gi|182437921|ref|YP_001825640.1| DNA integrity scanning protein DisA [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778557|ref|ZP_08237822.1| DNA integrity scanning protein disA [Streptomyces cf. griseus XylebKG-1] gi|226729443|sp|B1VSK3|DISA_STRGG RecName: Full=DNA integrity scanning protein disA gi|178466437|dbj|BAG20957.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658890|gb|EGE43736.1| DNA integrity scanning protein disA [Streptomyces cf. griseus XylebKG-1] Length = 374 Score = 38.2 bits (87), Expect = 5.4, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 10/69 (14%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 + + I L +++ Q L V VG+ A+++ E Sbjct: 314 VPRLPGAIIERLVEHFGGLQKLLAA----------SVDDLQTVDGVGEARARSVREGLSR 363 Query: 619 PRNICAVEA 627 +E Sbjct: 364 LAESSILER 372 >gi|320586352|gb|EFW99031.1| 3-ketosphinganine reductase [Grosmannia clavigera kw1407] Length = 350 Score = 38.2 bits (87), Expect = 5.4, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 +E K ++ TG + + R A++ GA V Sbjct: 35 PVEGKTVLLTGATEGMGRSVAKQLA-AQGADV 65 >gi|255526680|ref|ZP_05393584.1| DNA protecting protein DprA [Clostridium carboxidivorans P7] gi|296185600|ref|ZP_06854009.1| DNA protecting protein DprA [Clostridium carboxidivorans P7] gi|255509612|gb|EET85948.1| DNA protecting protein DprA [Clostridium carboxidivorans P7] gi|296049728|gb|EFG89153.1| DNA protecting protein DprA [Clostridium carboxidivorans P7] Length = 364 Score = 38.2 bits (87), Expect = 5.4, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 10/62 (16%) Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +I+ ++G I + L + + + +N D L+ V +G+ A I Sbjct: 5 WIWLSETPNIGDVIGKKLLEEFKTPKNIFDA----------DKEELMNVEGIGEKTANLI 54 Query: 613 VE 614 Sbjct: 55 FN 56 >gi|293610396|ref|ZP_06692697.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827628|gb|EFF85992.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 134 Score = 38.2 bits (87), Expect = 5.5, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%) Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 + + I N + L ++ +G+ AQAIVE+ Q ++ E Sbjct: 67 MTDSSGQIHLNQANIDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFE 126 Query: 641 KNV 643 KN Sbjct: 127 KNK 129 >gi|221124238|ref|XP_002159098.1| PREDICTED: similar to peroxisomal trans 2-enoyl CoA reductase [Hydra magnipapillata] gi|260219954|emb|CBA27008.1| Peroxisomal trans-2-enoyl-CoA reductase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 294 Score = 38.2 bits (87), Expect = 5.5, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 16/71 (22%) Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702 K +V TG I R A E LGA V+ ++G P KLEKA Sbjct: 8 APGLFAGKVVVITGGGSGIGRCTAHELA-ALGATVA----------LIGRKP-EKLEKAA 55 Query: 703 QLGVKIMNEEQ 713 + E+ Sbjct: 56 ----TEITEDG 62 >gi|194017433|ref|ZP_03056044.1| DNA integrity scanning protein [Bacillus pumilus ATCC 7061] gi|194010705|gb|EDW20276.1| DNA integrity scanning protein [Bacillus pumilus ATCC 7061] Length = 359 Score = 38.2 bits (87), Expect = 5.5, Method: Composition-based stats. Identities = 16/194 (8%), Positives = 48/194 (24%), Gaps = 15/194 (7%) Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S + + + + ++ + Q + E Sbjct: 174 STLSALEFEELVTFGDVLSVLHRYEMVLRIKNEINMYIKELGTEGHLIRLQVNELITDME 233 Query: 499 DPAFS-----IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 A ++ + +Q + E + + S N + + Sbjct: 234 QEAALFIKDYVKEKIKDPYVLLKQLQDMSSFELLDDSILYKLLGYPVSTNIDEYVYTRGY 293 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I + I ++ + + + D L V +G++ A+ I Sbjct: 294 RLLHKIPRLPMPIVENVVEAFGVLDRIMEA----------DVQDLDEVEGIGEVRAKKIK 343 Query: 614 EFYQNPRNICAVEA 627 + + + ++ Sbjct: 344 KGLKRLQEKHYIDR 357 >gi|291166051|gb|EFE28097.1| excinuclease ABC subunit C [Filifactor alocis ATCC 35896] Length = 618 Score = 38.2 bits (87), Expect = 5.5, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 39/128 (30%), Gaps = 13/128 (10%) Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F +D + L + S +V + + R Sbjct: 490 FGLYKDDKHRTKGICSDEELFEIDKKSDVYKLIYAIQEEVHRFAIEYHRSLREKHLSRSE 549 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + I VG++ L K + S +N ++ L V + A+ IV Sbjct: 550 LD--DIPGVGSKKKMILLKEFKSVKNIKEKTE----------EELSAVKGIDRRTAKNIV 597 Query: 614 EFYQNPRN 621 E++ + +N Sbjct: 598 EYF-DKKN 604 >gi|317126829|ref|YP_004093111.1| DNA integrity scanning, DisA, linker region [Bacillus cellulosilyticus DSM 2522] gi|315471777|gb|ADU28380.1| DNA integrity scanning, DisA, linker region [Bacillus cellulosilyticus DSM 2522] Length = 360 Score = 38.2 bits (87), Expect = 5.5, Method: Composition-based stats. Identities = 7/51 (13%), Positives = 17/51 (33%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 +N + + + L V +G+ A+ I E + ++ Sbjct: 308 VENLIDKFIELPEIMRANIEELDEVDGIGEARARKIKEGLTRIQEQLFIDR 358 >gi|206895893|ref|YP_002247838.1| 3-oxoacyl-(acyl-carrier-protein) reductase [Coprothermobacter proteolyticus DSM 5265] gi|206738510|gb|ACI17588.1| 3-oxoacyl-(acyl-carrier-protein) reductase [Coprothermobacter proteolyticus DSM 5265] Length = 253 Score = 38.2 bits (87), Expect = 5.5, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 10/52 (19%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYV-TQLGAVVSAILSRKTDIIIVGDNP 694 ++ K +V TG + R A + Q GA V A D + G+ Sbjct: 2 DGKLYGKVVVITGAGSGMGR--AASIIFAQEGAKVVA-----VDYV--GETA 44 >gi|134045229|ref|YP_001096715.1| Hef nuclease [Methanococcus maripaludis C5] gi|132662854|gb|ABO34500.1| ERCC4 domain protein [Methanococcus maripaludis C5] Length = 749 Score = 38.2 bits (87), Expect = 5.5, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 10/57 (17%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 G+ VG +A +L + S +N L V +G + A+ I E Sbjct: 695 GLPDVGPVMAENLLDNFNSVENIFTATE----------EELKAVEGMGPVTAKKIKE 741 >gi|316933006|ref|YP_004107988.1| short-chain dehydrogenase/reductase SDR [Rhodopseudomonas palustris DX-1] gi|315600720|gb|ADU43255.1| short-chain dehydrogenase/reductase SDR [Rhodopseudomonas palustris DX-1] Length = 257 Score = 38.2 bits (87), Expect = 5.6, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 + K V TG+ + I R A E + +LGA V +S Sbjct: 8 LSGKVAVITGSSRGIGRASA-ELLAKLGAKVV--VSS 41 >gi|148977675|ref|ZP_01814236.1| hypothetical protein VSWAT3_15249 [Vibrionales bacterium SWAT-3] gi|145963043|gb|EDK28312.1| hypothetical protein VSWAT3_15249 [Vibrionales bacterium SWAT-3] Length = 1553 Score = 38.2 bits (87), Expect = 5.6, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 14/104 (13%) Query: 40 KPII-LDS-EYDALKRRCDA---IAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 P I D + D+L + PDL S + P E+ S + P Sbjct: 890 NPEIESDELDIDSLLSENTSVDVFEQEQPDLEPSPELGSP-----EEIATSFESEA-TSP 943 Query: 95 TLSLEKIWNIED--LRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 SL I + ++ + ++ + + F EPKI G Sbjct: 944 -ASLGDISDDDEDTVEDWLAEAINDVESPSNIDSDFDFEPKIQG 986 >gi|294656307|ref|XP_458570.2| DEHA2D02354p [Debaryomyces hansenii CBS767] gi|199431369|emb|CAG86702.2| DEHA2D02354p [Debaryomyces hansenii] Length = 647 Score = 38.2 bits (87), Expect = 5.6, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 19/44 (43%) Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 + ++ G + L+ II + G + KA + G+ ++ Sbjct: 135 MIQLISDNGGKATDSLTMSNSCIITTEKTGKRYTKAVEWGIPVI 178 >gi|313633203|gb|EFS00081.1| ComE operon protein 1 [Listeria seeligeri FSL N1-067] Length = 202 Score = 38.2 bits (87), Expect = 5.7, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 22/60 (36%) Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 ++ I N L VP +G+ A AI+E+ + +E L EK Sbjct: 135 EKTEEKININTASTSDLQTVPGIGESKATAIIEYREKEGLFQTIEDLQNVTGIGEKTIEK 194 >gi|297526642|ref|YP_003668666.1| ERCC4 domain protein [Staphylothermus hellenicus DSM 12710] gi|297255558|gb|ADI31767.1| ERCC4 domain protein [Staphylothermus hellenicus DSM 12710] Length = 234 Score = 38.2 bits (87), Expect = 5.7, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 10/89 (11%) Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 +Y +++ +SL+ I + VG +AR L + + + +N A Sbjct: 152 RTEEKRIYRMRVEKKPMSLKDRILYVAESIVGPTLARKLLREFKTLRNIANA-------- 203 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 L+ V +G+ A I + Sbjct: 204 --SVKELMVVEGIGEKRANEIYLIFNTEW 230 >gi|307709136|ref|ZP_07645595.1| comE operon protein 1 [Streptococcus mitis SK564] gi|307620082|gb|EFN99199.1| comE operon protein 1 [Streptococcus mitis SK564] Length = 216 Score = 37.9 bits (86), Expect = 5.7, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 38/101 (37%) Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 ++++L + + + +V + + ++ + S + + + N L +V Sbjct: 111 DSKSLNLAQKVSDEALVYVPTKGEEATSQQFGSGTDSSTSKEKKVNLNKASLEELKQVKG 170 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 +G AQ I++ + +V+ L K EK Sbjct: 171 LGGKRAQDIIDHRETNGKFKSVDELKKVSGIGAKTIEKLKD 211 >gi|260782865|ref|XP_002586501.1| hypothetical protein BRAFLDRAFT_213741 [Branchiostoma floridae] gi|229271615|gb|EEN42512.1| hypothetical protein BRAFLDRAFT_213741 [Branchiostoma floridae] Length = 753 Score = 37.9 bits (86), Expect = 5.7, Method: Composition-based stats. Identities = 26/303 (8%), Positives = 64/303 (21%), Gaps = 23/303 (7%) Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 RG G D + + + + + E + + +G Sbjct: 390 TRGSYICGCDFGYNVDSNGLDCNGNNQDYFYNSQYTNECDQPDSCH-THAECTNNIGSYS 448 Query: 213 YANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 + N + L+ + GLG + G + Sbjct: 449 CSCNTGYRGHGTVCNNVDECDELLDSCLPGLGICIDNPGSYSCACRDGYVGDGVTCEDID 508 Query: 273 RQ----------ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ---------- 312 G + + + ++ + + ++ Sbjct: 509 ECLTDNDKCSDDCFNTEGSYTCRCKDGYRLAVDGFNCNDIDECAEKIDNCEQVCTNTEGG 568 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + S + + + S+ ++ Q+ + + G T Sbjct: 569 FNCSCASGFTNVRDSCQGNKNECSSDTMNACDQLCNNTDGGYMCGCYRGFMIGTDDRTCT 628 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 + D + + D G R G +E + S Sbjct: 629 --DVDECAKNELNDCDPNALCDNNQGGYTCSCRQGYTGNGTFCTDEDECTEGKHTCTENS 686 Query: 433 FCP 435 C Sbjct: 687 VCM 689 >gi|313637785|gb|EFS03136.1| ComE operon protein 1 [Listeria seeligeri FSL S4-171] Length = 201 Score = 37.9 bits (86), Expect = 5.8, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 22/60 (36%) Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 ++ I N L VP +G+ A AI+E+ + +E L EK Sbjct: 134 EKTEEKININTASTSDLQTVPGIGESKATAIIEYREKEGLFQTIEDLQNVTGIGEKTIEK 193 >gi|297545157|ref|YP_003677459.1| excinuclease ABC subunit C [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842932|gb|ADH61448.1| excinuclease ABC, C subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 615 Score = 37.9 bits (86), Expect = 5.8, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 3/72 (4%) Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ--N 618 + + R +A+ FA + L+ +P +G+ A+A+ + + Sbjct: 527 PMTTKAFRLIAQIQEEAHRFAITFHKEKQSKRFK-SELLNIPGIGEKRAKALYDAFNSIE 585 Query: 619 PRNICAVEALLK 630 +VE L K Sbjct: 586 EIKRASVEDLKK 597 >gi|220905823|ref|YP_002481134.1| excinuclease ABC subunit C [Cyanothece sp. PCC 7425] gi|254764930|sp|B8HSX6|UVRC_CYAP4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|219862434|gb|ACL42773.1| excinuclease ABC, C subunit [Cyanothece sp. PCC 7425] Length = 624 Score = 37.9 bits (86), Expect = 5.9, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 10/59 (16%) Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I +G E + L + S + L VPL+G +AQ I +++ Sbjct: 575 IPGLGYERQKQLLAAFRSIDYIREA----------SPEQLATVPLIGPRLAQQIYDYFH 623 >gi|195454731|ref|XP_002074376.1| GK10569 [Drosophila willistoni] gi|194170461|gb|EDW85362.1| GK10569 [Drosophila willistoni] Length = 841 Score = 37.9 bits (86), Expect = 5.9, Method: Composition-based stats. Identities = 25/339 (7%), Positives = 68/339 (20%), Gaps = 6/339 (1%) Query: 171 PTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM--IAVGRKPYANPRNAASGILRRLN 228 + + E K + G + + + Sbjct: 410 DCGKHACNRKCCGDQCLPCEKICGKPLSCNKHKCQSVCHRGPCYPCRLESVVNCRCGKTR 469 Query: 229 PTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM 288 + + I AK + + + P ++ + + + Sbjct: 470 RHVPCGRERNTRNLCLELCRISAKCHHFVEHRCHKGDCP--PCRQKCGLPNDVSGCGHIC 527 Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348 K++ + + + + PR S + Sbjct: 528 KAVCHEAVKVKNQKTLNIKTQIKKTYEYKVFPHPRCEESVNVKCIGGHEVITTPCWNSKP 587 Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVK-RAG 407 T R+ +T T+ N + ++ G R ++ Sbjct: 588 TSCYRKCGRVLKCGNHQCNLTCHTVPNLESMEQQVGCINCEEGCVRPRSSGCSHPCPKSC 647 Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467 + P ++ + C + K C + Sbjct: 648 HLPPCSPCSVLLKSKCHCGLIQVMYKCSEFFNDTASIQEQLEQKERLG-SCGNRCIKNFP 706 Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506 R L ++++ + + I Sbjct: 707 CGHRCLADCHSGICPGPELCRKKVRIYCPCKTLKQEISC 745 >gi|255523402|ref|ZP_05390371.1| excinuclease ABC, C subunit [Clostridium carboxidivorans P7] gi|296184685|ref|ZP_06853096.1| excinuclease ABC subunit C [Clostridium carboxidivorans P7] gi|255512860|gb|EET89131.1| excinuclease ABC, C subunit [Clostridium carboxidivorans P7] gi|296050467|gb|EFG89890.1| excinuclease ABC subunit C [Clostridium carboxidivorans P7] Length = 622 Score = 37.9 bits (86), Expect = 5.9, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 10/60 (16%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I +VG + + L K + S +N + LI+VP + A++I+E+++ Sbjct: 569 DIPNVGEKRRKELLKSFGSIENI----------KVAKYEELIKVPSIDRKAAESIIEYFR 618 >gi|328870578|gb|EGG18952.1| hypothetical protein DFA_02692 [Dictyostelium fasciculatum] Length = 412 Score = 37.9 bits (86), Expect = 6.0, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 6/53 (11%) Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI-----MNE 711 K E + + G ++ +++KT I+I D+ + KA L V + ++E Sbjct: 23 DKLVEKIEEAGGTIARAINKKTTIVIC-DDISVDVSKATTLSVPVAKSEYISE 74 >gi|315649732|ref|ZP_07902816.1| DNA integrity scanning protein DisA [Paenibacillus vortex V453] gi|315274920|gb|EFU38296.1| DNA integrity scanning protein DisA [Paenibacillus vortex V453] Length = 358 Score = 37.9 bits (86), Expect = 6.0, Method: Composition-based stats. Identities = 7/51 (13%), Positives = 22/51 (43%) Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 +N + +++ + + L V +G++ A+ I E + + ++ Sbjct: 306 IRNLVDQFHDLSSIMSASIHELDEVDGIGEVRARTIKEGLKRLQEQVFIDR 356 >gi|163938091|ref|YP_001642975.1| DNA integrity scanning protein DisA [Bacillus weihenstephanensis KBAB4] gi|229009593|ref|ZP_04166819.1| DNA integrity scanning protein disA [Bacillus mycoides DSM 2048] gi|229053930|ref|ZP_04195364.1| DNA integrity scanning protein disA [Bacillus cereus AH603] gi|229131091|ref|ZP_04260003.1| DNA integrity scanning protein disA [Bacillus cereus BDRD-ST196] gi|226729435|sp|A9VN96|DISA_BACWK RecName: Full=DNA integrity scanning protein disA gi|163860288|gb|ABY41347.1| protein of unknown function DUF147 [Bacillus weihenstephanensis KBAB4] gi|228652304|gb|EEL08229.1| DNA integrity scanning protein disA [Bacillus cereus BDRD-ST196] gi|228721348|gb|EEL72869.1| DNA integrity scanning protein disA [Bacillus cereus AH603] gi|228751615|gb|EEM01415.1| DNA integrity scanning protein disA [Bacillus mycoides DSM 2048] Length = 357 Score = 37.9 bits (86), Expect = 6.0, Method: Composition-based stats. Identities = 18/184 (9%), Positives = 50/184 (27%), Gaps = 15/184 (8%) Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 + + + + + + + ++ + Q + E Sbjct: 172 TNLGILEFEEVVTMSEVVHVLHSVEMVLRIKNEIVSYIHELGTEGRLIRLQLTELLADLE 231 Query: 499 -DPAFSIRIPADIFTLQRRQQ----TSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + A I+ T Q + + V + ++ +++ + Sbjct: 232 AEAALLIKDYYQEKTQDHHQILKKLQDLANTQLLEDSDLVKLLGYPGQMSLEESVTPRGY 291 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + I V I +L + + Q + L V +G++ A+ I Sbjct: 292 RIASKISRVPPLIIENLINRFKTLQGVCRAT----------INELDDVEGIGEVRAKKIR 341 Query: 614 EFYQ 617 E + Sbjct: 342 EGLK 345 >gi|292492317|ref|YP_003527756.1| ERCC4 domain protein [Nitrosococcus halophilus Nc4] gi|291580912|gb|ADE15369.1| ERCC4 domain protein [Nitrosococcus halophilus Nc4] Length = 236 Score = 37.9 bits (86), Expect = 6.0, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 10/68 (14%) Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + + G+ +G E AR L ++ S + L+ VP +G Sbjct: 161 KGKRRTQLTLLQGLPGIGPERARQLLAHFGSVEAVLNAH----------LEELMTVPGIG 210 Query: 606 DIIAQAIV 613 +A+ I Sbjct: 211 KEVARGIR 218 >gi|284166895|ref|YP_003405174.1| excinuclease ABC subunit C [Haloterrigena turkmenica DSM 5511] gi|284016550|gb|ADB62501.1| excinuclease ABC, C subunit [Haloterrigena turkmenica DSM 5511] Length = 597 Score = 37.9 bits (86), Expect = 6.0, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 10/74 (13%) Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 ++ + + E + VG E + L + S +N + + Sbjct: 532 AVQYHQTVRDEVKTVLDDVPGVGPETRKRLLGRFGSVENVREA----------SVDDIES 581 Query: 601 VPLVGDIIAQAIVE 614 V +G+ A+ I Sbjct: 582 VEGIGEKTAETIKS 595 >gi|288930501|ref|YP_003434561.1| ERCC4 domain protein [Ferroglobus placidus DSM 10642] gi|288892749|gb|ADC64286.1| ERCC4 domain protein [Ferroglobus placidus DSM 10642] Length = 213 Score = 37.9 bits (86), Expect = 6.0, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 10/91 (10%) Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 + + + + I +G E A+ L + + + Q A Sbjct: 128 LKYIDSKIRKGELRVFPRVKAKEDYQIAMLTAIPGIGEERAKRLLEKFGNLQRIANA--- 184 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 L+RV +G+ A+ I + ++ Sbjct: 185 -------SLYELMRVEGIGEKYARRIYDAFR 208 >gi|289578945|ref|YP_003477572.1| excinuclease ABC, C subunit [Thermoanaerobacter italicus Ab9] gi|289528658|gb|ADD03010.1| excinuclease ABC, C subunit [Thermoanaerobacter italicus Ab9] Length = 615 Score = 37.9 bits (86), Expect = 6.0, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 3/72 (4%) Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ--N 618 + + R +A+ FA + L+ +P +G+ A+A+ + + Sbjct: 527 PMTTKAFRLIAQIQEEAHRFAITFHKEKQSKRFK-SELLNIPGIGEKRAKALYDAFNSIE 585 Query: 619 PRNICAVEALLK 630 +VE L K Sbjct: 586 EIKRASVEDLKK 597 Score = 37.5 bits (85), Expect = 8.0, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 10/62 (16%) Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 L I +G + A++L + S + + L +V + + AQA+ E+ Sbjct: 563 LLNIPGIGEKRAKALYDAFNSIEEIKRA----------SVEDLKKVEGMNEKAAQAVYEY 612 Query: 616 YQ 617 ++ Sbjct: 613 FR 614 >gi|256545267|ref|ZP_05472632.1| UvrABC system, C protein [Anaerococcus vaginalis ATCC 51170] gi|256399094|gb|EEU12706.1| UvrABC system, C protein [Anaerococcus vaginalis ATCC 51170] Length = 615 Score = 37.9 bits (86), Expect = 6.1, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 40/122 (32%), Gaps = 15/122 (12%) Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + +I + +++R E ++ + + S I Sbjct: 506 DDKHTTRAIIYENEEIQIKKRDPVYKLIYEIQEEAHRFAINYHRKLMTQTMKKSELDNIN 565 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +G +L K++ S +N + L+ V L+G+ A I+++ Sbjct: 566 GIG-----KRKKENLLKHFKSVKNIKKA----------SLEELMEVDLIGESQALEIIKY 610 Query: 616 YQ 617 ++ Sbjct: 611 FK 612 >gi|164686654|ref|ZP_02210682.1| hypothetical protein CLOBAR_00249 [Clostridium bartlettii DSM 16795] gi|164604044|gb|EDQ97509.1| hypothetical protein CLOBAR_00249 [Clostridium bartlettii DSM 16795] Length = 604 Score = 37.9 bits (86), Expect = 6.1, Method: Composition-based stats. Identities = 7/63 (11%), Positives = 24/63 (38%), Gaps = 10/63 (15%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I +G + ++L ++ + ++ + L+ V + A+ I +++ Sbjct: 552 DIPGIGEKRKKNLLSHFKNIESIKAAT----------FEQLLEVESINKTAAENIYNYFK 601 Query: 618 NPR 620 + Sbjct: 602 SEE 604 >gi|119473243|ref|ZP_01614920.1| hypothetical protein ATW7_09838 [Alteromonadales bacterium TW-7] gi|119444537|gb|EAW25854.1| hypothetical protein ATW7_09838 [Alteromonadales bacterium TW-7] Length = 98 Score = 37.9 bits (86), Expect = 6.1, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642 ++ N+ D L ++P +G AQAIV + ++E L K K Sbjct: 33 AQIEAVSINSADAKMLAKLPGIGKKKAQAIVNYRDENGVFTSLEDLAKVKGIG-----KK 87 Query: 643 VSSEIENK 650 V S++E K Sbjct: 88 VMSKLEGK 95 >gi|257884754|ref|ZP_05664407.1| competence protein ComEA [Enterococcus faecium 1,231,501] gi|257820592|gb|EEV47740.1| competence protein ComEA [Enterococcus faecium 1,231,501] Length = 225 Score = 37.9 bits (86), Expect = 6.3, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 7/66 (10%) Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647 I N L ++P +G + AQ I+ F + + VE L + EK Sbjct: 164 ININTATPSELQQIPGIGSVKAQEIIRFREENGSFQKVEDLQEISGIGEKTVEKL----- 218 Query: 648 ENKKLV 653 K V Sbjct: 219 --KNFV 222 >gi|165932718|ref|YP_001649507.1| channel protein [Rickettsia rickettsii str. Iowa] gi|165907805|gb|ABY72101.1| channel protein [Rickettsia rickettsii str. Iowa] Length = 1153 Score = 37.9 bits (86), Expect = 6.3, Method: Composition-based stats. Identities = 25/292 (8%), Positives = 75/292 (25%), Gaps = 23/292 (7%) Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLV----KRAGEVIPKVVDIIVNERHPDAQPF 428 L + I+ + + ++ + + +G+++ + G + V + + + Sbjct: 832 LRSWQEIEHRVDTKRKLKEEKRVGIGEKIYAGYTGIKRGALTAIVGKDLRDAYEGNLTSA 891 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 + F K + H + +E G+ Sbjct: 892 EWHDFEYNDPRLRTYSEKLKDDEKAREHEELQMHINKEALAAQADILSPEYLARLEKAGR 951 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL-YDSINKRRN 547 +++ I + + + Sbjct: 952 HSDVEYYQELAQRKLIHEVHGRLFEEGEPVMMGDRFMREKATDSQMRDMIDNAHRKHAEF 1011 Query: 548 ISLERFIFSLGIRHVGAEIA--------RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 I +R+I + E A + L ++ +E+ +IA D Sbjct: 1012 IDGDRYIRRQEHYDIMYEKAQENLEQTYKELKDHFKRDDIKIEEMPALIAQKVKDTAEEA 1071 Query: 600 RVPLVGDIIAQAIVEFYQNPRN-------ICAVEALLKEVSPSIGRHEKNVS 644 + I + + F + +N + +E + ++ + ++ Sbjct: 1072 EIDQ---KITEELNNFNADVKNYEYSTEVLNKIEDRKQAITDEVNAQIDKIN 1120 >gi|16800587|ref|NP_470855.1| hypothetical protein lin1519 [Listeria innocua Clip11262] gi|16413992|emb|CAC96750.1| comEA [Listeria innocua Clip11262] Length = 200 Score = 37.9 bits (86), Expect = 6.3, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 + + + N+ + L +VP +GD A AI+E+ + +E L EK Sbjct: 133 SDTDKKVNINSATKIDLQQVPGIGDSKATAIIEYREKEGLFQTIEDLKNVTGIGEKTVEK 192 >gi|327262389|ref|XP_003216007.1| PREDICTED: cysteine-rich motor neuron 1 protein-like [Anolis carolinensis] Length = 1050 Score = 37.9 bits (86), Expect = 6.4, Method: Composition-based stats. Identities = 36/436 (8%), Positives = 81/436 (18%), Gaps = 43/436 (9%) Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----------SLNIPEIIEVRGE--- 190 E G RGDG G+ P + + R + Sbjct: 318 EAGYIPQIVSRGDGTPGKCCDVFECVNEAKPACIFNSVEYYDGDMFRMDACRFCRCQGGV 377 Query: 191 --VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 + ++ L + + G + + NP HG + Sbjct: 378 SICFSAQCGELHCDRYYVPEGECCPVCEDSISP----VSNPAGCYANSQIQAHGDRWRED 433 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP--YDIDGLVYKV 306 Q + + + E I P Y + Sbjct: 434 DCTFCQCINGESHCVATACGQSCLNPVKVPGECCPMCEEPTYITIGPPTCYPLMNCTLTE 493 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRL---LDIDIQIGRTGILTPVARLEPVNI 363 + ++ + S + + Q R P Sbjct: 494 MDCVYNFRVDQNGCRICQCKSREELCNDLMSDCSLDCAFGFQTDAHNCKICQCRPRPKKC 553 Query: 364 ----GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 L N+ + ++ G + + ++ + Sbjct: 554 KSVACDKDCPYGYLKNKHGCEICRCKKCP-----ELSCGKTCPMGFQKDDQGCLICRCIE 608 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 P S + R + + G C + S Sbjct: 609 LPASIIPPAKAGSCLSVDGHRHENEESWHDG--------CRECYCLNGREMCALITCSVP 660 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 + Q D + + T+ + + + Sbjct: 661 NCGNPTIHPGQCCP--SCPDESIVEKPELSGPTICYVPGGDYFVEGDTWNIDSCTQCTCH 718 Query: 540 DSINKRRNISLERFIF 555 ++ + Sbjct: 719 NARVLCETEVCPPLLC 734 >gi|293596227|ref|ZP_05229458.2| comE operon protein [Listeria monocytogenes FSL J1-194] gi|293593694|gb|EFG01455.1| comE operon protein [Listeria monocytogenes FSL J1-194] Length = 211 Score = 37.9 bits (86), Expect = 6.4, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 22/54 (40%) Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 I N+ L +VP +G+ A AI+E+ + +E L EK Sbjct: 150 INLNSATKDDLQQVPGIGESKATAIIEYREKEGLFQTIEDLKNVSGIGEKTVEK 203 >gi|15892069|ref|NP_359783.1| hypothetical protein RC0146 [Rickettsia conorii str. Malish 7] gi|81528528|sp|Q92JC1|Y146_RICCN RecName: Full=Uncharacterized lipoprotein RC0146; Flags: Precursor gi|15619190|gb|AAL02684.1| unknown [Rickettsia conorii str. Malish 7] Length = 1153 Score = 37.9 bits (86), Expect = 6.4, Method: Composition-based stats. Identities = 26/292 (8%), Positives = 75/292 (25%), Gaps = 23/292 (7%) Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLV----KRAGEVIPKVVDIIVNERHPDAQPF 428 L + IK + + ++ + + +G+++ + G + V + + + Sbjct: 832 LRSWQEIKHRVDTKRKLKEEKRVGIGEKIYAGYTGIKRGVLTAIVGKDLRDAYEGNLTSA 891 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 + F K + H + +E G+ Sbjct: 892 EWHDFEYNDPRLRTYSEKLKDDEKAREHEELQMHINKEALAAQADILSPEYLARLEKAGR 951 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL-YDSINKRRN 547 +++ I + + + Sbjct: 952 HSDVEYYQELAQRKLIHEVHGRLFEEGEPVMMGDRFMREKATDSQMRDMIDNAHRKHAEF 1011 Query: 548 ISLERFIFSLGIRHVGAEIA--------RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 I +R+I + E A + L ++ +E+ +IA D Sbjct: 1012 IDGDRYIRRQEHYDIMHEKAQENLEQTYKELKDHFKRDDIKIEEMPALIAQKVKDTAEGA 1071 Query: 600 RVPLVGDIIAQAIVEFYQNPRN-------ICAVEALLKEVSPSIGRHEKNVS 644 + I + + F + +N + +E + ++ + ++ Sbjct: 1072 EIDQ---KITEELNNFNADVKNYEYSTEVLNKIEDRKQAITDEVNAQIDKIN 1120 >gi|299137105|ref|ZP_07030288.1| excinuclease ABC, C subunit [Acidobacterium sp. MP5ACTX8] gi|298601620|gb|EFI57775.1| excinuclease ABC, C subunit [Acidobacterium sp. MP5ACTX8] Length = 699 Score = 37.9 bits (86), Expect = 6.5, Method: Composition-based stats. Identities = 33/248 (13%), Positives = 74/248 (29%), Gaps = 15/248 (6%) Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 + + L + + I D ++ A V VV + D + F + + Sbjct: 455 NMQEALQEALTLAEPPERIECFDISHIQGAETVASMVVWEKGVMKKADYRKFQVKTVTGV 514 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 +R++ + K + ++ H ++ I + Sbjct: 515 DDFASMREIIHRRYKRLNENKEPLPSLILIDGGLGQLHAAAQALTEIGLTTQPLAS--IA 572 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + + D + R+ I+ I + + R+ + E Sbjct: 573 KREEIIYVHGQEDDPVVLDRRSPVLHVIQKIRDESHRFAVTYHRKRRQMRDRTSE----L 628 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 I VG + L +++ S + Q + +L+ V V A+ I +F+ Sbjct: 629 DDIPGVGTITRQRLLEHFGSVRALKQAAEK-------NPDALLSV--VNKATAEKIRQFF 679 Query: 617 QNPRNICA 624 R + A Sbjct: 680 TEERELEA 687 >gi|227503085|ref|ZP_03933134.1| possible competence protein EA [Corynebacterium accolens ATCC 49725] gi|227076146|gb|EEI14109.1| possible competence protein EA [Corynebacterium accolens ATCC 49725] Length = 225 Score = 37.9 bits (86), Expect = 6.5, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 22/54 (40%) Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 N+ L + VG++ A+AIV F + VE LL+ + K Sbjct: 168 NSATAAELTDLSGVGEVTAEAIVSFREERGGFKDVEELLEVSGIGPAKFAKLKD 221 >gi|83767703|dbj|BAE57842.1| unnamed protein product [Aspergillus oryzae] Length = 820 Score = 37.9 bits (86), Expect = 6.5, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 10/113 (8%) Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKT 685 LK V + + LVF+G L + GAV+S ++ KT Sbjct: 495 LKLVPDIKDIMPQIKRQILGGVILVFSGVLPLGTDTQNADISLWAKSFGAVISQKINVKT 554 Query: 686 DIIIVGDNPGSKLEKAQQL-GVKIMNEEQFL------FLLQQYNTTLRIHDDD 731 ++ G N +K+ +A + VKI+ + L L + L +H DD Sbjct: 555 THLVAGRNRTAKVREATRYTNVKIVTTQWLLDCLTQWKWLDEEPYLLPVHPDD 607 >gi|46907712|ref|YP_014101.1| DNA-binding protein ComEA [Listeria monocytogenes serotype 4b str. F2365] gi|47094098|ref|ZP_00231823.1| comE operon protein 1 [Listeria monocytogenes str. 4b H7858] gi|258611690|ref|ZP_05241456.2| comE operon protein [Listeria monocytogenes FSL R2-503] gi|293596847|ref|ZP_05264778.2| comE operon protein [Listeria monocytogenes HPB2262] gi|300764851|ref|ZP_07074841.1| hypothetical protein LMHG_12882 [Listeria monocytogenes FSL N1-017] gi|11991257|gb|AAG42266.1|AF320589_1 competence protein 1 [Listeria monocytogenes] gi|46880981|gb|AAT04278.1| DNA-binding protein, ComEA family [Listeria monocytogenes serotype 4b str. F2365] gi|47017528|gb|EAL08336.1| comE operon protein 1 [Listeria monocytogenes str. 4b H7858] gi|258605410|gb|EEW18018.1| comE operon protein [Listeria monocytogenes FSL R2-503] gi|293582969|gb|EFF95001.1| comE operon protein [Listeria monocytogenes HPB2262] gi|300514527|gb|EFK41584.1| hypothetical protein LMHG_12882 [Listeria monocytogenes FSL N1-017] Length = 211 Score = 37.9 bits (86), Expect = 6.5, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 22/54 (40%) Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 I N+ L +VP +G+ A AI+E+ + +E L EK Sbjct: 150 INLNSATKDDLQQVPGIGESKATAIIEYREKEGLFQTIEDLKNVSGIGEKTVEK 203 >gi|293552878|ref|ZP_06673536.1| competence protein comEA [Enterococcus faecium E1039] gi|291603012|gb|EFF33206.1| competence protein comEA [Enterococcus faecium E1039] Length = 238 Score = 37.9 bits (86), Expect = 6.6, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 7/66 (10%) Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647 I N L ++P +G + AQ I+ F + + VE L + EK Sbjct: 177 ININTATPSELQQIPGIGSVKAQEIIRFREENGSFQKVEDLQEISGIGEKTVEKL----- 231 Query: 648 ENKKLV 653 K V Sbjct: 232 --KNFV 235 >gi|266621145|ref|ZP_06114080.1| excinuclease ABC subunit C [Clostridium hathewayi DSM 13479] gi|288867215|gb|EFC99513.1| excinuclease ABC subunit C [Clostridium hathewayi DSM 13479] Length = 625 Score = 37.9 bits (86), Expect = 6.6, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 10/60 (16%) Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 I +G ++L +Y+ + + +L P + AQ++ +F+ Sbjct: 576 DIPDIGPTRRKALMRYFKDIEAIKEAT----------IEALTAAPGMNAKSAQSVYDFFH 625 >gi|153810942|ref|ZP_01963610.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174] gi|149832830|gb|EDM87913.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174] Length = 1439 Score = 37.9 bits (86), Expect = 6.6, Method: Composition-based stats. Identities = 22/250 (8%), Positives = 65/250 (26%), Gaps = 34/250 (13%) Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER----LKHF 475 D + + + + K L T + +K+ Sbjct: 1201 CTRDDIMIYLISMGVESSLAFTIMEAVRKGKGLREEWEATMREHNVPEWYIWSCKKIKYM 1260 Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE---NILGFGD 532 + + ++ +F + A+ + T + + + Sbjct: 1261 FPKAHAAAYVMMAWRIAWFKVFKPLAYYAAFFSIRATAFSYETMCMGRDRLDFYLAELRK 1320 Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ-NFAQEINNIIAHN 591 + +++ + + +++ G+ + ++ R+ A + Sbjct: 1321 KGDAASKKEQDTIKDMRIVQEMYARGLEFMPIDLYRAKANRFQIIDGKLMPA-------- 1372 Query: 592 NDDWLSLIRVPLVGDIIAQAIVE------FYQNPRNI------CAVEALLKEVSPSIGRH 639 L + +GD A+A+V+ F V L+ ++ Sbjct: 1373 ------LNCIDGMGDKAAEAVVDAAKQGKFLSKDDFRDRTKVSKTVIDLMDDLGIFGDIP 1426 Query: 640 EKNVSSEIEN 649 + N S + Sbjct: 1427 QSNQFSLFDG 1436 >gi|119629544|gb|EAX09139.1| hCG1811463, isoform CRA_b [Homo sapiens] Length = 253 Score = 37.9 bits (86), Expect = 6.6, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 5/45 (11%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAV 676 P+ + N K++ TL K+ R + + + +LG Sbjct: 10 PAAMNASAPADKPLSNMKIL---TLGKLSRNKDEVKATIEKLGGK 51 >gi|317144011|ref|XP_001819844.2| RNA polymerase II subunit A C-terminal domain phosphatase [Aspergillus oryzae RIB40] Length = 799 Score = 37.9 bits (86), Expect = 6.7, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 10/113 (8%) Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKT 685 LK V + + LVF+G L + GAV+S ++ KT Sbjct: 474 LKLVPDIKDIMPQIKRQILGGVILVFSGVLPLGTDTQNADISLWAKSFGAVISQKINVKT 533 Query: 686 DIIIVGDNPGSKLEKAQQL-GVKIMNEEQFL------FLLQQYNTTLRIHDDD 731 ++ G N +K+ +A + VKI+ + L L + L +H DD Sbjct: 534 THLVAGRNRTAKVREATRYTNVKIVTTQWLLDCLTQWKWLDEEPYLLPVHPDD 586 >gi|257878122|ref|ZP_05657775.1| competence protein ComEA [Enterococcus faecium 1,230,933] gi|257881092|ref|ZP_05660745.1| competence protein ComEA [Enterococcus faecium 1,231,502] gi|257889678|ref|ZP_05669331.1| competence protein ComEA [Enterococcus faecium 1,231,410] gi|257892384|ref|ZP_05672037.1| competence protein ComEA [Enterococcus faecium 1,231,408] gi|260559171|ref|ZP_05831357.1| competence protein ComEA [Enterococcus faecium C68] gi|257812350|gb|EEV41108.1| competence protein ComEA [Enterococcus faecium 1,230,933] gi|257816750|gb|EEV44078.1| competence protein ComEA [Enterococcus faecium 1,231,502] gi|257826038|gb|EEV52664.1| competence protein ComEA [Enterococcus faecium 1,231,410] gi|257828763|gb|EEV55370.1| competence protein ComEA [Enterococcus faecium 1,231,408] gi|260074928|gb|EEW63244.1| competence protein ComEA [Enterococcus faecium C68] Length = 225 Score = 37.9 bits (86), Expect = 6.7, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 7/66 (10%) Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647 I N L ++P +G + AQ I+ F + + VE L + EK Sbjct: 164 ININTATPSELQQIPGIGSVKAQEIIRFREENGSFQKVEDLQEISGIGEKTVEKL----- 218 Query: 648 ENKKLV 653 K V Sbjct: 219 --KNFV 222 >gi|229015486|ref|ZP_04172484.1| DNA integrity scanning protein disA [Bacillus cereus AH1273] gi|229021695|ref|ZP_04178277.1| DNA integrity scanning protein disA [Bacillus cereus AH1272] gi|228739563|gb|EEL89977.1| DNA integrity scanning protein disA [Bacillus cereus AH1272] gi|228745773|gb|EEL95777.1| DNA integrity scanning protein disA [Bacillus cereus AH1273] Length = 357 Score = 37.9 bits (86), Expect = 6.7, Method: Composition-based stats. Identities = 18/184 (9%), Positives = 50/184 (27%), Gaps = 15/184 (8%) Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 + + + + + + + ++ + Q + E Sbjct: 172 TNLGILEFEEVVTMSEVVHVLHSVEMVLRIKNEILSYIHELGTEGRLIRLQLTELLADLE 231 Query: 499 -DPAFSIRIPADIFTLQRRQQ----TSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + A I+ T Q + + V + ++ +++ + Sbjct: 232 AEAALLIKDYYQEKTQDHHQILKKLQDLANTQLLEDSDLVKLLGYPGQMSLEESVTPRGY 291 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + I V I +L + + Q + L V +G++ A+ I Sbjct: 292 RIASKISRVPPLIIENLINRFKTLQGVCRAT----------INELDDVEGIGEVRAKKIR 341 Query: 614 EFYQ 617 E + Sbjct: 342 EGLK 345 >gi|226224085|ref|YP_002758192.1| integral membrane protein ComEA [Listeria monocytogenes Clip81459] gi|254992214|ref|ZP_05274404.1| ComEA family DNA-binding protein [Listeria monocytogenes FSL J2-064] gi|255520858|ref|ZP_05388095.1| ComEA family DNA-binding protein [Listeria monocytogenes FSL J1-175] gi|225876547|emb|CAS05256.1| Putative integral membrane protein ComEA [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328465525|gb|EGF36754.1| ComEA family DNA-binding protein [Listeria monocytogenes 1816] gi|332311926|gb|EGJ25021.1| DNA-binding protein, ComEA family [Listeria monocytogenes str. Scott A] Length = 200 Score = 37.9 bits (86), Expect = 6.7, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 22/54 (40%) Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 I N+ L +VP +G+ A AI+E+ + +E L EK Sbjct: 139 INLNSATKDDLQQVPGIGESKATAIIEYREKEGLFQTIEDLKNVSGIGEKTVEK 192 >gi|127513417|ref|YP_001094614.1| helix-hairpin-helix repeat-containing competence protein ComEA [Shewanella loihica PV-4] gi|126638712|gb|ABO24355.1| competence protein ComEA helix-hairpin-helix repeat protein [Shewanella loihica PV-4] Length = 99 Score = 37.9 bits (86), Expect = 6.8, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL--LKEVSPSIGR 638 AQ + + N L ++ +G+ A AIVE+ ++E L +K + P + Sbjct: 32 AQASLSQVNINTASAQELTQLKGIGEAKASAIVEYRDAHGKFNSIEELTQVKGIGPKVIE 91 Query: 639 HEKNV 643 K + Sbjct: 92 QNKAI 96 >gi|325198757|gb|ADY94213.1| hypothetical protein NMBG2136_1528 [Neisseria meningitidis G2136] Length = 154 Score = 37.9 bits (86), Expect = 6.8, Method: Composition-based stats. Identities = 16/133 (12%), Positives = 31/133 (23%), Gaps = 1/133 (0%) Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572 L + + + L R L + + + + Sbjct: 2 LYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFV 61 Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632 + + N L +P +G A+AI E+ +V+ L K Sbjct: 62 LF-CMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVK 120 Query: 633 SPSIGRHEKNVSS 645 K Sbjct: 121 GIGPAVLAKLKDQ 133 >gi|121635674|ref|YP_975919.1| putative DNA transport competence protein [Neisseria meningitidis FAM18] gi|120867380|emb|CAM11152.1| putative DNA transport competence protein [Neisseria meningitidis FAM18] Length = 154 Score = 37.9 bits (86), Expect = 6.8, Method: Composition-based stats. Identities = 16/133 (12%), Positives = 31/133 (23%), Gaps = 1/133 (0%) Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572 L + + + L R L + + + + Sbjct: 2 LYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFV 61 Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632 + + N L +P +G A+AI E+ +V+ L K Sbjct: 62 LF-CMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVK 120 Query: 633 SPSIGRHEKNVSS 645 K Sbjct: 121 GIGPAVLAKLKDQ 133 >gi|121635298|ref|YP_975543.1| putative DNA transport competence protein [Neisseria meningitidis FAM18] gi|121635568|ref|YP_975813.1| putative DNA transport competence protein [Neisseria meningitidis FAM18] gi|120867004|emb|CAM10767.1| putative DNA transport competence protein [Neisseria meningitidis FAM18] gi|120867274|emb|CAM11045.1| putative DNA transport competence protein [Neisseria meningitidis FAM18] Length = 154 Score = 37.9 bits (86), Expect = 6.8, Method: Composition-based stats. Identities = 16/133 (12%), Positives = 31/133 (23%), Gaps = 1/133 (0%) Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572 L + + + L R L + + + + Sbjct: 2 LYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFV 61 Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632 + + N L +P +G A+AI E+ +V+ L K Sbjct: 62 LF-CMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVK 120 Query: 633 SPSIGRHEKNVSS 645 K Sbjct: 121 GIGPAVLAKLKDQ 133 >gi|121633939|ref|YP_974184.1| putative DNA transport competence protein [Neisseria meningitidis FAM18] gi|120865645|emb|CAM09365.1| putative DNA transport competence protein [Neisseria meningitidis