HHsearch alignment for GI: 254781174 and conserved domain: COG4105

>COG4105 ComL DNA uptake lipoprotein [General function prediction only].
Probab=100.00  E-value=0  Score=365.40  Aligned_cols=242  Identities=34%  Similarity=0.574  Sum_probs=225.8

Q ss_pred             HHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             9999999999-972268753334456777673689999999999980989999999999985304773026899877887
Q gi|254781174|r   25 TIFFSIAVCF-LVGWERQSSRDVYLDSVTDVRYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFV  103 (271)
Q Consensus        25 ~i~~~i~~~~-l~~Cs~~~~~~~~~~~~~~~~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~  103 (271)
T Consensus         6 ~l~~~l~~~~~~~~cs~~~~~~-----~~~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~~~~~~qa~l~l~yA   80 (254)
T COG4105           6 LLVIGLLLLVASTGCSGDKDKN-----GVYNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYA   80 (254)
T ss_pred             HHHHHHHHHHHHCCCCCCHHHC-----CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             9999999999712577623330-----55578899999999999863788999999999987099981128999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             76545556799999887540112110135554434445555443111234589999999999985200101345655555
Q gi|254781174|r  104 QYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVT  183 (271)
Q Consensus       104 ~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~  183 (271)
T Consensus        81 ~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~  160 (254)
T COG4105          81 YYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIV  160 (254)
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             88135589999999999987899987169999999987526775444779999999999999987889702355999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf             55666666655566666544322345689998865289981159999999999997498799999999997856999789
Q gi|254781174|r  184 VGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWA  263 (271)
Q Consensus       184 ~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~~  263 (271)
T Consensus       161 ~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~~~  240 (254)
T COG4105         161 KLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQWY  240 (254)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCH
T ss_conf             99999889999999999990576999999999987145552047789999999998287278999999997368988203


Q ss_pred             HHHHHHHC
Q ss_conf             99998609
Q gi|254781174|r  264 RYVETLVK  271 (271)
Q Consensus       264 ~~a~~~l~  271 (271)
T Consensus       241 ~~~~~~~~  248 (254)
T COG4105         241 KDAYRLLQ  248 (254)
T ss_pred             HHHHHHCC
T ss_conf             56665043