HHsearch alignment for GI: 254781174 and conserved domain: COG4785

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only].
Probab=97.78  E-value=0.00086  Score=40.18  Aligned_cols=173  Identities=21%  Similarity=0.208  Sum_probs=106.4

Q ss_pred             CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             68999999999998098999999999998530477302689987788776545556799999887540112110135554
Q gi|254781174|r   56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYY  135 (271)
Q Consensus        56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y  135 (271)
T Consensus        98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya---~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY  174 (297)
T COG4785          98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA---HLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY  174 (297)
T ss_pred             CHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHH---HHCCCEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             58999899999986022057999866671047751077---760440234447515559999999844989807899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---------HHHH-HHHHHHHCCHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q ss_conf             434445555443111234589999---------9999-9998520010134565555-------5556666666555666
Q gi|254781174|r  136 LVGMSYAQMIRDVPYDQRATKLML---------QYMS-RIVERYTNSPYVKGARFYV-------TVGRNQLAAKEVEIGR  198 (271)
Q Consensus       136 ~~a~~~~~~~~~~~~d~~~~~~A~---------~~f~-~~i~~yP~S~ya~~A~~~l-------~~~~~~La~~e~~ia~  198 (271)
T Consensus       175 l~---------E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K  245 (297)
T COG4785         175 LN---------EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGK  245 (297)
T ss_pred             HH---------HHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             87---------610786899999999987056765518799999704039999999986312128999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHC
Q ss_conf             6654432234568999886528-99811599999999999974
Q gi|254781174|r  199 YYLKRGEYVAAIPRFQLVLANY-SDAEHAEEAMARLVEAYVAL  240 (271)
Q Consensus       199 ~Y~~~~~y~aA~~~~~~~i~~y-p~t~~~~eAl~~l~~~y~~l  240 (271)
T Consensus       246 ~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~~  288 (297)
T COG4785         246 YYLSLGDLDEATALFKLAVANNVYNFVEHRYALLELSLLGQDQ  288 (297)
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9861311788999999999887999999999999999842311