HHsearch alignment for GI: 254781174 and conserved domain: COG4785
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only].
Probab=97.78 E-value=0.00086 Score=40.18 Aligned_cols=173 Identities=21% Similarity=0.208 Sum_probs=106.4
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 68999999999998098999999999998530477302689987788776545556799999887540112110135554
Q gi|254781174|r 56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYY 135 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y 135 (271)
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya---~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY 174 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA---HLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY 174 (297)
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHH---HHCCCEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 58999899999986022057999866671047751077---760440234447515559999999844989807899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHH-HHHHHHHCCHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q ss_conf 434445555443111234589999---------9999-9998520010134565555-------5556666666555666
Q gi|254781174|r 136 LVGMSYAQMIRDVPYDQRATKLML---------QYMS-RIVERYTNSPYVKGARFYV-------TVGRNQLAAKEVEIGR 198 (271)
Q Consensus 136 ~~a~~~~~~~~~~~~d~~~~~~A~---------~~f~-~~i~~yP~S~ya~~A~~~l-------~~~~~~La~~e~~ia~ 198 (271)
T Consensus 175 l~---------E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K 245 (297)
T COG4785 175 LN---------EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGK 245 (297)
T ss_pred HH---------HHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87---------610786899999999987056765518799999704039999999986312128999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHC
Q ss_conf 6654432234568999886528-99811599999999999974
Q gi|254781174|r 199 YYLKRGEYVAAIPRFQLVLANY-SDAEHAEEAMARLVEAYVAL 240 (271)
Q Consensus 199 ~Y~~~~~y~aA~~~~~~~i~~y-p~t~~~~eAl~~l~~~y~~l 240 (271)
T Consensus 246 ~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~~ 288 (297)
T COG4785 246 YYLSLGDLDEATALFKLAVANNVYNFVEHRYALLELSLLGQDQ 288 (297)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9861311788999999999887999999999999999842311