HHsearch alignment for GI: 254781174 and conserved domain: COG5010
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion].
Probab=98.08 E-value=0.00034 Score=42.56 Aligned_cols=157 Identities=13% Similarity=0.124 Sum_probs=103.1
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999999809899999999999853047730268998778877654555679999988754011211013555443444
Q gi|254781174|r 61 YEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMS 140 (271)
Q Consensus 61 Y~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~ 140 (271)
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~---~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~---~~~~lgaa 143 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAA---QGKNQIRNGNFGEAVSVLRKAARLAPTDWE---AWNLLGAA 143 (257)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHH---HHHHHHHHCCHHHHHHHHHHHHCCCCCCHH---HHHHHHHH
T ss_conf 887777774055550078875540147454999999---999999804568899999998436999746---66677899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 55554431112345899999999999852001013456555555566666665556666654432234568999886528
Q gi|254781174|r 141 YAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANY 220 (271)
Q Consensus 141 ~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~y 220 (271)
T Consensus 144 ldq~--------Gr~~~Ar~ay~qAl~L~~~~p~~~n-----------------Nlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 144 LDQL--------GRFDEARRAYRQALELAPNEPSIAN-----------------NLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHC--------CCHHHHHHHHHHHHHHCCCCCHHHH-----------------HHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 9973--------6756778999999984258844666-----------------58999997277989999999998678
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 9981159999999999997498799999999
Q gi|254781174|r 221 SDAEHAEEAMARLVEAYVALALMDEAREVVS 251 (271)
Q Consensus 221 p~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~ 251 (271)
T Consensus 199 ~ad~~v---~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 199 AADSRV---RQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred CCCHHH---HHHHHHHHHHCCCHHHHHHHCC
T ss_conf 876389---9989999840488677776242