HHsearch alignment for GI: 254781174 and conserved domain: COG5010
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion].
Probab=97.87 E-value=0.0016 Score=38.67 Aligned_cols=194 Identities=10% Similarity=0.030 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH--HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 99999999999997226875333445677767368999--9999999980989999999999985304773026899877
Q gi|254781174|r 23 ALTIFFSIAVCFLVGWERQSSRDVYLDSVTDVRYQREV--YEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMS 100 (271)
Q Consensus 23 ~~~i~~~i~~~~l~~Cs~~~~~~~~~~~~~~~~~~~~l--Y~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~l 100 (271)
T Consensus 4 ~~~~~~a~l~~~~~~c~~~~~~~~----~~~g~~~~a~~~~~~~---~~~~q~~~a~~al~~~~~~~p~d~~i----~~~ 72 (257)
T COG5010 4 LGGAVLAALALSLAGCAGQAGQRE----MSTGASAKATGAPESS---LAMRQTQGAAAALGAAVLRNPEDLSI----AKL 72 (257)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCHH----HCCCCCHHCCCCHHHH---HHHHHHHHHHHHHHHHHHCCCCHHHH----HHH
T ss_conf 877999999999742421157400----0022210011447899---99876668999999998068201778----887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 88776545556799999887540112110135554434445555443111234589999999999985200101345655
Q gi|254781174|r 101 AFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARF 180 (271)
Q Consensus 101 a~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~ 180 (271)
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~---~gk~~~~--------~g~~~~A~~~~rkA~~l~p~d~-----~~ 136 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAYPKDRELLAA---QGKNQIR--------NGNFGEAVSVLRKAARLAPTDW-----EA 136 (257)
T ss_pred HHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHH---HHHHHHH--------HCCHHHHHHHHHHHHCCCCCCH-----HH
T ss_conf 777774055550078875540147454999999---9999998--------0456889999999843699974-----66
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 555556666666555666665443223456899988652899811599999999999974987999999999978569
Q gi|254781174|r 181 YVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYP 258 (271)
Q Consensus 181 ~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP 258 (271)
T Consensus 137 ~------------~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p---~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 137 W------------NLLGAALDQLGRFDEARRAYRQALELAPNEP---SIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred H------------HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 6------------6778999973675677899999998425884---4666589999972779899999999986788