HHsearch alignment for GI: 254781174 and conserved domain: COG5010

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion].
Probab=97.87  E-value=0.0016  Score=38.67  Aligned_cols=194  Identities=10%  Similarity=0.030  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH--HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             99999999999997226875333445677767368999--9999999980989999999999985304773026899877
Q gi|254781174|r   23 ALTIFFSIAVCFLVGWERQSSRDVYLDSVTDVRYQREV--YEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMS  100 (271)
Q Consensus        23 ~~~i~~~i~~~~l~~Cs~~~~~~~~~~~~~~~~~~~~l--Y~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~l  100 (271)
T Consensus         4 ~~~~~~a~l~~~~~~c~~~~~~~~----~~~g~~~~a~~~~~~~---~~~~q~~~a~~al~~~~~~~p~d~~i----~~~   72 (257)
T COG5010           4 LGGAVLAALALSLAGCAGQAGQRE----MSTGASAKATGAPESS---LAMRQTQGAAAALGAAVLRNPEDLSI----AKL   72 (257)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCHH----HCCCCCHHCCCCHHHH---HHHHHHHHHHHHHHHHHHCCCCHHHH----HHH
T ss_conf             877999999999742421157400----0022210011447899---99876668999999998068201778----887


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             88776545556799999887540112110135554434445555443111234589999999999985200101345655
Q gi|254781174|r  101 AFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARF  180 (271)
Q Consensus       101 a~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~  180 (271)
T Consensus        73 a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~---~gk~~~~--------~g~~~~A~~~~rkA~~l~p~d~-----~~  136 (257)
T COG5010          73 ATALYLRGDADSSLAVLQKSAIAYPKDRELLAA---QGKNQIR--------NGNFGEAVSVLRKAARLAPTDW-----EA  136 (257)
T ss_pred             HHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHH---HHHHHHH--------HCCHHHHHHHHHHHHCCCCCCH-----HH
T ss_conf             777774055550078875540147454999999---9999998--------0456889999999843699974-----66


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             555556666666555666665443223456899988652899811599999999999974987999999999978569
Q gi|254781174|r  181 YVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYP  258 (271)
Q Consensus       181 ~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP  258 (271)
T Consensus       137 ~------------~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p---~~~nNlgms~~L~gd~~~A~~lll~a~l~~~  199 (257)
T COG5010         137 W------------NLLGAALDQLGRFDEARRAYRQALELAPNEP---SIANNLGMSLLLRGDLEDAETLLLPAYLSPA  199 (257)
T ss_pred             H------------HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf             6------------6778999973675677899999998425884---4666589999972779899999999986788