HHsearch alignment for GI: 254781174 and conserved domain: PRK02603
>PRK02603 photosystem I assembly protein Ycf3; Provisional.
Probab=99.19 E-value=4.7e-10 Score=76.74 Aligned_cols=120 Identities=12% Similarity=0.078 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 89999999999980989999999999985304773026899877887765455567999998875401121101355544
Q gi|254781174|r 57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYL 136 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~ 136 (271)
T Consensus 35 A~~Yy~~G~~~q~~G~Y~EAle~Y~kAL~Le~dp~D~s~ilyNiGlIY~~~G~~~kAie~Y~kALeiNP~~~~---AlNN 111 (172)
T PRK02603 35 AFVYYRDGMSAQNDGDYAEALENYEEALKLEEDPNDRSYILYNMAIIYASNGEHDKALETYHQALELNPKQPS---ALNN 111 (172)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---HHHH
T ss_conf 9999972257774579999999999987277896208999977999999869988999999999986899789---9999
Q ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 34445555443------1112345899999999999852001013456555
Q gi|254781174|r 137 VGMSYAQMIRD------VPYDQRATKLMLQYMSRIVERYTNSPYVKGARFY 181 (271)
Q Consensus 137 ~a~~~~~~~~~------~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~ 181 (271)
T Consensus 112 lgvIY~k~G~~a~~~~~~~~~~~~fdkAa~yw~kAI~l~P~ny--i~aqn~ 160 (172)
T PRK02603 112 IAVIYHKRGRKAEEAGDQDEAEAWFDKAAEYWKQAIRLAPNNY--IEAQNW 160 (172)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHHH
T ss_conf 9999999859999845877899999999999999885099870--999999