HHsearch alignment for GI: 254781174 and conserved domain: PRK02603

>PRK02603 photosystem I assembly protein Ycf3; Provisional.
Probab=99.19  E-value=4.7e-10  Score=76.74  Aligned_cols=120  Identities=12%  Similarity=0.078  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             89999999999980989999999999985304773026899877887765455567999998875401121101355544
Q gi|254781174|r   57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYL  136 (271)
Q Consensus        57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~  136 (271)
T Consensus        35 A~~Yy~~G~~~q~~G~Y~EAle~Y~kAL~Le~dp~D~s~ilyNiGlIY~~~G~~~kAie~Y~kALeiNP~~~~---AlNN  111 (172)
T PRK02603         35 AFVYYRDGMSAQNDGDYAEALENYEEALKLEEDPNDRSYILYNMAIIYASNGEHDKALETYHQALELNPKQPS---ALNN  111 (172)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---HHHH
T ss_conf             9999972257774579999999999987277896208999977999999869988999999999986899789---9999


Q ss_pred             HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             34445555443------1112345899999999999852001013456555
Q gi|254781174|r  137 VGMSYAQMIRD------VPYDQRATKLMLQYMSRIVERYTNSPYVKGARFY  181 (271)
Q Consensus       137 ~a~~~~~~~~~------~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~  181 (271)
T Consensus       112 lgvIY~k~G~~a~~~~~~~~~~~~fdkAa~yw~kAI~l~P~ny--i~aqn~  160 (172)
T PRK02603        112 IAVIYHKRGRKAEEAGDQDEAEAWFDKAAEYWKQAIRLAPNNY--IEAQNW  160 (172)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHHH
T ss_conf             9999999859999845877899999999999999885099870--999999