HHsearch alignment for GI: 254781174 and conserved domain: PRK10866
>PRK10866 outer membrane protein assembly complex subunit YfiO; Provisional.
Probab=100.00 E-value=0 Score=375.80 Aligned_cols=232 Identities=22% Similarity=0.375 Sum_probs=218.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 99999999999999999722687533344567776736899999999999809899999999999853047730268998
Q gi|254781174|r 19 LYKFALTIFFSIAVCFLVGWERQSSRDVYLDSVTDVRYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLL 98 (271)
Q Consensus 19 m~k~~~~i~~~i~~~~l~~Cs~~~~~~~~~~~~~~~~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~ 98 (271)
T Consensus 1 m~~~k~l~~~~~l~l~l~gCs~~~~~-------~~~~~~~~~Y~~A~~~~~~~~y~~A~~~fe~l~~~yP~s~~A~qA~L 73 (243)
T PRK10866 1 MTRMKYLVAAATLSLFLAGCSGSKEE-------VPDNPPNEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQL 73 (243)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCC-------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 94589999999999999876899888-------88999999999999999878999999999999986899767899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77887765455567999998875401121101355544344455----------55443111234589999999999985
Q gi|254781174|r 99 MSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYA----------QMIRDVPYDQRATKLMLQYMSRIVER 168 (271)
Q Consensus 99 ~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~----------~~~~~~~~d~~~~~~A~~~f~~~i~~ 168 (271)
T Consensus 74 ~~ayayy~~~~y~~A~~~~~rFi~lyP~~~~v~Ya~Yl~gl~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~f~~li~~ 153 (243)
T PRK10866 74 DLIYAYYKNADLPLAQAAIDRFMRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRG 153 (243)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99999873077899999999999867899973899999889877401358888743256430769999999999999987
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 20010134565555555666666655566666544322345689998865289981159999999999997498799999
Q gi|254781174|r 169 YTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEARE 248 (271)
Q Consensus 169 yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~ 248 (271)
T Consensus 154 yP~S~Ya~dA~~r~~~lrn~LA~~El~Va~fY~kr~~y~AAi~R~~~vi~~Yp~t~~~~eAL~~l~eaY~~Lgl~~~A~~ 233 (243)
T PRK10866 154 YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTKRGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQLNAQADK 233 (243)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 89984589999999999999999999999999992656999999999997689996339999999999998699789999
Q ss_pred HHHHHHHHC
Q ss_conf 999997856
Q gi|254781174|r 249 VVSLIQERY 257 (271)
Q Consensus 249 ~~~~l~~~y 257 (271)
T Consensus 234 ~~~vL~~N~ 242 (243)
T PRK10866 234 VAKIIAANS 242 (243)
T ss_pred HHHHHHHHC
T ss_conf 999996126