HHsearch alignment for GI: 254781174 and conserved domain: TIGR02917
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein; InterPro: IPR014266 This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system , analogous to the LPXTG/sortase system common in Gram-positive bacteria. The proteins in this entry occur in a species if, and only if, a transmembrane histidine kinase (IPR014265 from INTERPRO) and a DNA-binding response regulator (IPR014264 from INTERPRO) also occur. The present of tetratricopeptide repeats (TPR) suggests they may be involved in protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator..
Probab=99.60 E-value=4.5e-13 Score=94.35 Aligned_cols=162 Identities=15% Similarity=0.197 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH------------H--------------HHHH
Q ss_conf 8998778877654555679999988754011211013555443444555------------5--------------4431
Q gi|254781174|r 95 KSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQ------------M--------------IRDV 148 (271)
Q Consensus 95 ~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~------------~--------------~~~~ 148 (271)
T Consensus 452 ~a~~~L~~~yL~~~~~dKAla~~~~l~~~~pd~p~~---~nl~G~i~l~~~~~~kA~~~f~~AL~i~p~~~~A~~nLA~~ 528 (924)
T TIGR02917 452 RADLLLILSYLRSGEFDKALAAAKKLEKKQPDNPSL---HNLLGAIYLGKKDLAKAREAFEKALKIEPDFFPAAANLARI 528 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 478999998874204899999999997528898268---99999999851787899999998753187784789999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11234589999999999985200101345655555556666-----------------6665556666654432234568
Q gi|254781174|r 149 PYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQL-----------------AAKEVEIGRYYLKRGEYVAAIP 211 (271)
Q Consensus 149 ~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~L-----------------a~~e~~ia~~Y~~~~~y~aA~~ 211 (271)
T Consensus 529 d~~~~~~~~A~~r~~~~l~~~P~~~~a~~~La~L~~~~g~~~~~~~~l~~A~~~~~~~~~p~l~L~~~yl~~~~l~kAl~ 608 (924)
T TIGR02917 529 DLQEGNPDDAKQRFEKVLTIDPKNLRALLALAELAARTGNEEEAVAWLEKAAEKNPKEIEPALALAQYYLSKGELKKALA 608 (924)
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 87428968999999999875743379999999999851896899999999986281777789999999986589878999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 999886528998115999999999999749879999999999785699978
Q gi|254781174|r 212 RFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYW 262 (271)
Q Consensus 212 ~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~ 262 (271)
T Consensus 609 ~l~~~~~~~~~~~---~~~~~Lg~~ql~~~d~~~A~~~f~Kl~~~~P~~~~ 656 (924)
T TIGR02917 609 ILNEAADLAPDSP---EALELLGRAQLAAGDLNKAVESFKKLLELQPDSAL 656 (924)
T ss_pred HHHHHHHHCCCCH---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCH
T ss_conf 9999987314757---89999999999732467799999999986888723