HHsearch alignment for GI: 254781174 and conserved domain: cd00189
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C.
Probab=99.08 E-value=1.6e-09 Score=73.69 Aligned_cols=99 Identities=21% Similarity=0.327 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999998098999999999998530477302689987788776545556799999887540112110135554434
Q gi|254781174|r 59 EVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVG 138 (271)
Q Consensus 59 ~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a 138 (271)
T Consensus 2 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la 75 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA---DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA---KAYYNLG 75 (100)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHH
T ss_conf 899999999984999999999999998599989---9999999999985985899999999998698989---9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 445555443111234589999999999985200
Q gi|254781174|r 139 MSYAQMIRDVPYDQRATKLMLQYMSRIVERYTN 171 (271)
Q Consensus 139 ~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~ 171 (271)
T Consensus 76 ~~~~~~--------~~~~~A~~~~~~al~~~P~ 100 (100)
T cd00189 76 LAYYKL--------GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHC--------CCHHHHHHHHHHHHHHCCC
T ss_conf 999994--------9999999999999974908