HHsearch alignment for GI: 254781174 and conserved domain: cd00189

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C.
Probab=99.08  E-value=1.6e-09  Score=73.69  Aligned_cols=99  Identities=21%  Similarity=0.327  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             99999999998098999999999998530477302689987788776545556799999887540112110135554434
Q gi|254781174|r   59 EVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVG  138 (271)
Q Consensus        59 ~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a  138 (271)
T Consensus         2 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la   75 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA---DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA---KAYYNLG   75 (100)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHH
T ss_conf             899999999984999999999999998599989---9999999999985985899999999998698989---9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             445555443111234589999999999985200
Q gi|254781174|r  139 MSYAQMIRDVPYDQRATKLMLQYMSRIVERYTN  171 (271)
Q Consensus       139 ~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~  171 (271)
T Consensus        76 ~~~~~~--------~~~~~A~~~~~~al~~~P~  100 (100)
T cd00189          76 LAYYKL--------GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHC--------CCHHHHHHHHHHHHHHCCC
T ss_conf             999994--------9999999999999974908