HHsearch results for GI: 254781174 and protein with PDBid: 1qqe_A
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.48 E-value=7.3e-12 Score=86.01 Aligned_cols=196 Identities=11% Similarity=0.076 Sum_probs=145.6
Q ss_pred HHHHHHHH-HHHHHHCCHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-
Q ss_conf 89999999-99998098999999999998530477---30268998778877654555679999988754011211013-
Q gi|254781174|r 57 QREVYEKA-VLFLKEQNFSKAYEYFNQCSRDFPFA---GVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVD- 131 (271)
Q Consensus 57 ~~~lY~~a-~~~~~~~~y~~A~~~f~~i~~~~P~s---~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~- 131 (271)
+.++|.++ ..+...++|++|++.|++....++.. ..+..+...+|.+|...+++++|+..+++.++.+++.....
T Consensus 36 A~~~y~~aa~~f~~~k~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~~~~y~~~~~~~~A~~~~~~a~~~~~~~g~~~~ 115 (292)
T 1qqe_A 36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR 115 (292)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 99999999999998789999999999999999886997999999999999998769879999999999998775374168
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --555443444555544311123458999999999998520010134565555555666666655566666544322345
Q gi|254781174|r 132 --YVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAA 209 (271)
Q Consensus 132 --~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA 209 (271)
.++...|..+. .+++...+|+..+++.+..++.......+. .--..+|..|...|+|..|
T Consensus 116 a~~~~~~la~~~~-------~~~~~~~~A~~~y~kA~~~~~~~~~~~~~~-----------~~~~~la~~~~~~~~y~~A 177 (292)
T 1qqe_A 116 GANFKFELGEILE-------NDLHDYAKAIDCYELAGEWYAQDQSVALSN-----------KCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHH-------HTTCCHHHHHHHHHHHHHHHHHTTCHHHHH-----------HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----------HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999989999-------872109999999999998755368889899-----------9999999999984369999
Q ss_pred HHHHHHHHHHCCCCHH----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHH
Q ss_conf 6899988652899811----599999999999974987999999999978---569997899999860
Q gi|254781174|r 210 IPRFQLVLANYSDAEH----AEEAMARLVEAYVALALMDEAREVVSLIQE---RYPQGYWARYVETLV 270 (271)
Q Consensus 210 ~~~~~~~i~~yp~t~~----~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~---~yP~s~~~~~a~~~l 270 (271)
+..|+.++...|+.+. +...+..++.++..+|+...|.+.+..... .||+|+..+...+++
T Consensus 178 ~~~y~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~A~~~~~~~~~~~~~~~~s~E~~~l~~l~ 245 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLI 245 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 99999999873413465688999999999999980899999999999997587888709999999999