HHsearch results for GI: 254781174 and protein with PDBid: 1qqe_A

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.48  E-value=7.3e-12  Score=86.01  Aligned_cols=196  Identities=11%  Similarity=0.076  Sum_probs=145.6

Q ss_pred             HHHHHHHH-HHHHHHCCHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-
Q ss_conf             89999999-99998098999999999998530477---30268998778877654555679999988754011211013-
Q gi|254781174|r   57 QREVYEKA-VLFLKEQNFSKAYEYFNQCSRDFPFA---GVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVD-  131 (271)
Q Consensus        57 ~~~lY~~a-~~~~~~~~y~~A~~~f~~i~~~~P~s---~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~-  131 (271)
                      +.++|.++ ..+...++|++|++.|++....++..   ..+..+...+|.+|...+++++|+..+++.++.+++..... 
T Consensus        36 A~~~y~~aa~~f~~~k~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~~~~y~~~~~~~~A~~~~~~a~~~~~~~g~~~~  115 (292)
T 1qqe_A           36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR  115 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf             99999999999998789999999999999999886997999999999999998769879999999999998775374168


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             --555443444555544311123458999999999998520010134565555555666666655566666544322345
Q gi|254781174|r  132 --YVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAA  209 (271)
Q Consensus       132 --~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA  209 (271)
                        .++...|..+.       .+++...+|+..+++.+..++.......+.           .--..+|..|...|+|..|
T Consensus       116 a~~~~~~la~~~~-------~~~~~~~~A~~~y~kA~~~~~~~~~~~~~~-----------~~~~~la~~~~~~~~y~~A  177 (292)
T 1qqe_A          116 GANFKFELGEILE-------NDLHDYAKAIDCYELAGEWYAQDQSVALSN-----------KCFIKCADLKALDGQYIEA  177 (292)
T ss_dssp             HHHHHHHHHHHHH-------HTTCCHHHHHHHHHHHHHHHHHTTCHHHHH-----------HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----------HHHHHHHHHHHHHHHHHHH
T ss_conf             9999999989999-------872109999999999998755368889899-----------9999999999984369999


Q ss_pred             HHHHHHHHHHCCCCHH----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHH
Q ss_conf             6899988652899811----599999999999974987999999999978---569997899999860
Q gi|254781174|r  210 IPRFQLVLANYSDAEH----AEEAMARLVEAYVALALMDEAREVVSLIQE---RYPQGYWARYVETLV  270 (271)
Q Consensus       210 ~~~~~~~i~~yp~t~~----~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~---~yP~s~~~~~a~~~l  270 (271)
                      +..|+.++...|+.+.    +...+..++.++..+|+...|.+.+.....   .||+|+..+...+++
T Consensus       178 ~~~y~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~A~~~~~~~~~~~~~~~~s~E~~~l~~l~  245 (292)
T 1qqe_A          178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLI  245 (292)
T ss_dssp             HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             99999999873413465688999999999999980899999999999997587888709999999999