HHsearch results for GI: 254781174 and protein with PDBid: 1xnf_A

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomics, unkown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64  E-value=6.2e-14  Score=98.08  Aligned_cols=195  Identities=18%  Similarity=0.162  Sum_probs=136.9

Q ss_pred             CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             36899999999999809899999999999853047730268998778877654555679999988754011211013555
Q gi|254781174|r   55 RYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVY  134 (271)
Q Consensus        55 ~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~  134 (271)
                      ..++.+|..|..+...|+|++|+..|++++...|..   +.+...+|.++..+|++++|+..|++.++..|+++   .++
T Consensus        41 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~---~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~---~a~  114 (275)
T 1xnf_A           41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---YAH  114 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---HHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHH---HHH
T ss_conf             999999999999998799999999999999809998---99999999999885899999999765001383178---999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH------HHH-------H--HHHHHHH
Q ss_conf             443444555544311123458999999999998520010134565555555666------666-------6--5556666
Q gi|254781174|r  135 YLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQ------LAA-------K--EVEIGRY  199 (271)
Q Consensus       135 y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~------La~-------~--e~~ia~~  199 (271)
                      +.+|.+++.+        +...+|+..++..+...|+.................      +..       .  ...+..+
T Consensus       115 ~~l~~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (275)
T 1xnf_A          115 LNRGIALYYG--------GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEF  186 (275)
T ss_dssp             HHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHH
T ss_pred             HHHHHHHHCC--------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf             9862321023--------66999999999998729767999999999999849099999999999737733623468999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-HHHHHH
Q ss_conf             65443223456899988652899----81159999999999997498799999999997856999-789999
Q gi|254781174|r  200 YLKRGEYVAAIPRFQLVLANYSD----AEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQG-YWARYV  266 (271)
Q Consensus       200 Y~~~~~y~aA~~~~~~~i~~yp~----t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s-~~~~~a  266 (271)
                      +.........   +......+..    .+...++.+.+|.+|...|..++|.+.++.....-|++ .+++.+
T Consensus       187 ~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~a  255 (275)
T 1xnf_A          187 YLGNISEQTL---MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYA  255 (275)
T ss_dssp             HTTSSCHHHH---HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHH
T ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             9866532001---37899998888773812099999999999987899999999999988498669999999