HHsearch results for GI: 254781174 and protein with PDBid: 1xnf_A
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomics, unkown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=6.2e-14 Score=98.08 Aligned_cols=195 Identities=18% Similarity=0.162 Sum_probs=136.9
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 36899999999999809899999999999853047730268998778877654555679999988754011211013555
Q gi|254781174|r 55 RYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVY 134 (271)
Q Consensus 55 ~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~ 134 (271)
..++.+|..|..+...|+|++|+..|++++...|.. +.+...+|.++..+|++++|+..|++.++..|+++ .++
T Consensus 41 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~---~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~---~a~ 114 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---YAH 114 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---HHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHH---HHH
T ss_conf 999999999999998799999999999999809998---99999999999885899999999765001383178---999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH------HHH-------H--HHHHHHH
Q ss_conf 443444555544311123458999999999998520010134565555555666------666-------6--5556666
Q gi|254781174|r 135 YLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQ------LAA-------K--EVEIGRY 199 (271)
Q Consensus 135 y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~------La~-------~--e~~ia~~ 199 (271)
+.+|.+++.+ +...+|+..++..+...|+................. +.. . ...+..+
T Consensus 115 ~~l~~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (275)
T 1xnf_A 115 LNRGIALYYG--------GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEF 186 (275)
T ss_dssp HHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHH
T ss_pred HHHHHHHHCC--------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 9862321023--------66999999999998729767999999999999849099999999999737733623468999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-HHHHHH
Q ss_conf 65443223456899988652899----81159999999999997498799999999997856999-789999
Q gi|254781174|r 200 YLKRGEYVAAIPRFQLVLANYSD----AEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQG-YWARYV 266 (271)
Q Consensus 200 Y~~~~~y~aA~~~~~~~i~~yp~----t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s-~~~~~a 266 (271)
+......... +......+.. .+...++.+.+|.+|...|..++|.+.++.....-|++ .+++.+
T Consensus 187 ~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~a 255 (275)
T 1xnf_A 187 YLGNISEQTL---MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYA 255 (275)
T ss_dssp HTTSSCHHHH---HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 9866532001---37899998888773812099999999999987899999999999988498669999999