HHsearch results for GI: 254781174 and protein with PDBid: 1xnf_A

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomics, unkown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.35  E-value=3.5e-10  Score=76.20  Aligned_cols=177  Identities=16%  Similarity=0.160  Sum_probs=116.2

Q ss_pred             CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             36899999999999809899999999999853047730268998778877654555679999988754011211013555
Q gi|254781174|r   55 RYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVY  134 (271)
Q Consensus        55 ~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~  134 (271)
                      ..+..++..|..+...|++++|+..|++++...|...   .+.+.+|.+++..|+++.|+..+++.++..|+.+..   .
T Consensus        75 ~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~---~a~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~  148 (275)
T 1xnf_A           75 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFR---S  148 (275)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH---H
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH---H
T ss_conf             9899999999999885899999999765001383178---999986232102366999999999998729767999---9


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH--------------------HHHHHHHHHHHHHHHHHHHH
Q ss_conf             4434445555443111234589999999999985200101--------------------34565555555666666655
Q gi|254781174|r  135 YLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPY--------------------VKGARFYVTVGRNQLAAKEV  194 (271)
Q Consensus       135 y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~y--------------------a~~A~~~l~~~~~~La~~e~  194 (271)
                      ...+++......      ..  .+.. +......-+....                    +.............+++-.+
T Consensus       149 ~~~~~~~~~~~~------~~--~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (275)
T 1xnf_A          149 LWLYLAEQKLDE------KQ--AKEV-LKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNF  219 (275)
T ss_dssp             HHHHHHHHHHCH------HH--HHHH-HHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCC------HH--HHHH-HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             999999998490------99--9999-99999737733623468999986653200137899998888773812099999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf             56666654432234568999886528998-11599999999999974987999
Q gi|254781174|r  195 EIGRYYLKRGEYVAAIPRFQLVLANYSDA-EHAEEAMARLVEAYVALALMDEA  246 (271)
Q Consensus       195 ~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t-~~~~eAl~~l~~~y~~lg~~d~A  246 (271)
                      .+|..|...|++..|+..|+.++..-|+. ....-++..|++.....+...++
T Consensus       220 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~a~~~L~~l~~~~~~~~~~  272 (275)
T 1xnf_A          220 YLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAES  272 (275)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             99999998789999999999998849866999999999999828647679866