HHsearch results for GI: 254781174 and protein with PDBid: 1xnf_A
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomics, unkown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.35 E-value=3.5e-10 Score=76.20 Aligned_cols=177 Identities=16% Similarity=0.160 Sum_probs=116.2
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 36899999999999809899999999999853047730268998778877654555679999988754011211013555
Q gi|254781174|r 55 RYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVY 134 (271)
Q Consensus 55 ~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~ 134 (271)
..+..++..|..+...|++++|+..|++++...|... .+.+.+|.+++..|+++.|+..+++.++..|+.+.. .
T Consensus 75 ~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~---~a~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~ 148 (275)
T 1xnf_A 75 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFR---S 148 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH---H
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH---H
T ss_conf 9899999999999885899999999765001383178---999986232102366999999999998729767999---9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH--------------------HHHHHHHHHHHHHHHHHHHH
Q ss_conf 4434445555443111234589999999999985200101--------------------34565555555666666655
Q gi|254781174|r 135 YLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPY--------------------VKGARFYVTVGRNQLAAKEV 194 (271)
Q Consensus 135 y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~y--------------------a~~A~~~l~~~~~~La~~e~ 194 (271)
...+++...... .. .+.. +......-+.... +.............+++-.+
T Consensus 149 ~~~~~~~~~~~~------~~--~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (275)
T 1xnf_A 149 LWLYLAEQKLDE------KQ--AKEV-LKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNF 219 (275)
T ss_dssp HHHHHHHHHHCH------HH--HHHH-HHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC------HH--HHHH-HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 999999998490------99--9999-99999737733623468999986653200137899998888773812099999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 56666654432234568999886528998-11599999999999974987999
Q gi|254781174|r 195 EIGRYYLKRGEYVAAIPRFQLVLANYSDA-EHAEEAMARLVEAYVALALMDEA 246 (271)
Q Consensus 195 ~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t-~~~~eAl~~l~~~y~~lg~~d~A 246 (271)
.+|..|...|++..|+..|+.++..-|+. ....-++..|++.....+...++
T Consensus 220 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~a~~~L~~l~~~~~~~~~~ 272 (275)
T 1xnf_A 220 YLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAES 272 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 99999998789999999999998849866999999999999828647679866