HHsearch results for GI: 254781174 and protein with PDBid: 2ho1_A
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2fi7_A
Probab=99.55 E-value=5.5e-13 Score=92.55 Aligned_cols=165 Identities=12% Similarity=-0.018 Sum_probs=128.4
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 53047730268998778877654555679999988754011211013555443444555544311123458999999999
Q gi|254781174|r 85 RDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSR 164 (271)
Q Consensus 85 ~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~ 164 (271)
..-+..+...+|.+.+|.+|...|++++|+..|++.++..|+++ .+++.+|.++..+ +...+|+..|+.
T Consensus 28 ~~~~~~~~~~day~~Lg~~y~~~g~~~~A~~~~~~al~~~p~~~---~a~~~Lg~~~~~~--------g~~~~A~~~~~~ 96 (252)
T 2ho1_A 28 KTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA---DAHAALAVVFQTE--------MEPKLADEEYRK 96 (252)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH---HHHHHHHHHHHHT--------TCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHC--------CCHHHHHHHHHH
T ss_conf 02314088999999999999985999999999999998399989---9999999999986--------999999999999
Q ss_pred HHHHHHCCHHHHHHHHHH-------H----HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 998520010134565555-------5----5566--------66666555666665443223456899988652899811
Q gi|254781174|r 165 IVERYTNSPYVKGARFYV-------T----VGRN--------QLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEH 225 (271)
Q Consensus 165 ~i~~yP~S~ya~~A~~~l-------~----~~~~--------~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~ 225 (271)
.++..|++..+......+ . .+.. .-+.--+.+|..|.+.|++..|+..|+.+++..|+.+
T Consensus 97 al~~~p~~~~~~~~la~~~~~~~~~~eA~~~~~~al~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~- 175 (252)
T 2ho1_A 97 ALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQP- 175 (252)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH-
T ss_pred HHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH-
T ss_conf 9872997707889987889984548999999999998633751146541289998876999999999999998689989-
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 59999999999997498799999999997856999789
Q gi|254781174|r 226 AEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWA 263 (271)
Q Consensus 226 ~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~~ 263 (271)
++++.++.+|...|+.++|...+..+....|++...
T Consensus 176 --~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 211 (252)
T 2ho1_A 176 --SVALEMADLLYKEREYVPARQYYDLFAQGGGQNARS 211 (252)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHH
T ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf --999999999998699999999999998558799999