HHsearch results for GI: 254781174 and protein with PDBid: 2ifu_A
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.36 E-value=1.8e-10 Score=77.86 Aligned_cols=196 Identities=13% Similarity=0.066 Sum_probs=139.4
Q ss_pred HHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 89999-99999998098999999999998530477---302689987788776545556799999887540112110135
Q gi|254781174|r 57 QREVY-EKAVLFLKEQNFSKAYEYFNQCSRDFPFA---GVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDY 132 (271)
Q Consensus 57 ~~~lY-~~a~~~~~~~~y~~A~~~f~~i~~~~P~s---~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~ 132 (271)
+...| +.|..+...|+|++|++.|++....++.. ..+..+...+|.++..++++++|+..+++.+..|........
T Consensus 35 Aa~~y~~ag~~y~~~~~~~~A~~~~~kA~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~ 114 (307)
T 2ifu_A 35 AASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDT 114 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 99999999999998789999999999999862523797899999999999998726589999989999999886189067
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5--54434445555443111234589999999999985200101345655555556666666555666665443223456
Q gi|254781174|r 133 V--YYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAI 210 (271)
Q Consensus 133 A--~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~ 210 (271)
+ .+..+..... .+...+|+..|++.+..+........ .+.--..+|..|.+.|+|..|+
T Consensus 115 aa~~~~~~~~~~~--------~~~~~~a~~~y~~A~~i~~~~~~~~~-----------~~~~~~~la~~~~~~~~y~eA~ 175 (307)
T 2ifu_A 115 AAMALDRAGKLME--------PLDLSKAVHLYQQAAAVFENEERLRQ-----------AAELIGKASRLLVRQQKFDEAA 175 (307)
T ss_dssp HHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHHHHHTTCHHH-----------HHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHH--------HCCHHHHHHHHHHHHHHHHHCCCCHH-----------HHHHHHHHHHHHHHHCCHHHHH
T ss_conf 7788877889987--------14599999999999999987599647-----------9999974889988716899999
Q ss_pred HHHHHHHHHC---CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHC
Q ss_conf 8999886528---99811599999999999974987999999999978--5699978999998609
Q gi|254781174|r 211 PRFQLVLANY---SDAEHAEEAMARLVEAYVALALMDEAREVVSLIQE--RYPQGYWARYVETLVK 271 (271)
Q Consensus 211 ~~~~~~i~~y---p~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~--~yP~s~~~~~a~~~l~ 271 (271)
..|+..+..+ .+.+....++..++.+|..+|+...|.+.+..... .|++|+..+..+.||+
T Consensus 176 ~~~~~a~~i~~~~~~~~~~~~~~~~l~~~~l~~gd~~~A~~~~~~a~~~~~f~~s~e~~~~~~Ll~ 241 (307)
T 2ifu_A 176 ASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQ 241 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 999999999998689099999999799999986899999999999855666799899999999999