HHsearch results for GI: 254781174 and protein with PDBid: 2uy1_A
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.09 E-value=1e-08 Score=67.64 Aligned_cols=166 Identities=10% Similarity=-0.061 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH---HHH
Q ss_conf 68999999999998098999999999998530477302689987788776545556799999887540112110---135
Q gi|254781174|r 56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKN---VDY 132 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~---~~~ 132 (271)
.+...+..|......++++.|+..+++++...|.+. ..+.++.++...+++++|+..|++.+...|.+.. ...
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~----~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~ 287 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMF----LSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDL 287 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSH----HHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHH
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 899999999998752308899998888752599689----9999999999874399999999999986730010131089
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55443444555544311123458999999999998520010134565555555666666655566666544322345689
Q gi|254781174|r 133 VYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPR 212 (271)
Q Consensus 133 A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~ 212 (271)
++...|.++ +..+...+|...|++.+...|++.- . ...+|..+...|++..|+..
T Consensus 288 ~~~~~~~~~--------~~~~~~~~a~~~~~~a~~~~p~~~~---~--------------~~~~~~~~~~~~~~~~A~~~ 342 (493)
T 2uy1_A 288 LRINHLNYV--------LKKRGLELFRKLFIELGNEGVGPHV---F--------------IYCAFIEYYATGSRATPYNI 342 (493)
T ss_dssp HHHHHHHHH--------HHHHCHHHHHHHHHHHTTSCCCHHH---H--------------HHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHH--------HHCCCHHHHHHHHHHHHHHCCCHHH---H--------------HHHHHHHHHHCCCHHHHHHH
T ss_conf 999999999--------9879989999999999774998899---9--------------99999998754489999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99886528998115999999999999749879999999999
Q gi|254781174|r 213 FQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLI 253 (271)
Q Consensus 213 ~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l 253 (271)
|+..+..+|+.+ +++..++..+..+|..++|+..++.+
T Consensus 343 ~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~ 380 (493)
T 2uy1_A 343 FSSGLLKHPDST---LLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHCTTCH---HHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999987289859---99999999998869899999999988