HHsearch results for GI: 254781174 and protein with PDBid: 2uy1_A

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.09  E-value=1e-08  Score=67.64  Aligned_cols=166  Identities=10%  Similarity=-0.061  Sum_probs=101.0

Q ss_pred             CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH---HHH
Q ss_conf             68999999999998098999999999998530477302689987788776545556799999887540112110---135
Q gi|254781174|r   56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKN---VDY  132 (271)
Q Consensus        56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~---~~~  132 (271)
                      .+...+..|......++++.|+..+++++...|.+.    ..+.++.++...+++++|+..|++.+...|.+..   ...
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~----~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~  287 (493)
T 2uy1_A          212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMF----LSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDL  287 (493)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSH----HHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             899999999998752308899998888752599689----9999999999874399999999999986730010131089


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             55443444555544311123458999999999998520010134565555555666666655566666544322345689
Q gi|254781174|r  133 VYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPR  212 (271)
Q Consensus       133 A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~  212 (271)
                      ++...|.++        +..+...+|...|++.+...|++.-   .              ...+|..+...|++..|+..
T Consensus       288 ~~~~~~~~~--------~~~~~~~~a~~~~~~a~~~~p~~~~---~--------------~~~~~~~~~~~~~~~~A~~~  342 (493)
T 2uy1_A          288 LRINHLNYV--------LKKRGLELFRKLFIELGNEGVGPHV---F--------------IYCAFIEYYATGSRATPYNI  342 (493)
T ss_dssp             HHHHHHHHH--------HHHHCHHHHHHHHHHHTTSCCCHHH---H--------------HHHHHHHHHHHCCSHHHHHH
T ss_pred             HHHHHHHHH--------HHCCCHHHHHHHHHHHHHHCCCHHH---H--------------HHHHHHHHHHCCCHHHHHHH
T ss_conf             999999999--------9879989999999999774998899---9--------------99999998754489999999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             99886528998115999999999999749879999999999
Q gi|254781174|r  213 FQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLI  253 (271)
Q Consensus       213 ~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l  253 (271)
                      |+..+..+|+.+   +++..++..+..+|..++|+..++.+
T Consensus       343 ~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~  380 (493)
T 2uy1_A          343 FSSGLLKHPDST---LLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHHCTTCH---HHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHHCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             999987289859---99999999998869899999999988