HHsearch results for GI: 254781174 and protein with PDBid: 2vq2_A
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.74 E-value=1.5e-15 Score=107.44 Aligned_cols=191 Identities=13% Similarity=0.085 Sum_probs=127.1
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 68999999999998098999999999998530477302689987788776545556799999887540112110135554
Q gi|254781174|r 56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYY 135 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y 135 (271)
+.....+.|..+++.|+|++|+..|++++...|.. ..+.+.+|.++...|++++|+..|++.++..|+++. +++
T Consensus 7 ~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 80 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN---ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE---INN 80 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH---HHH
T ss_conf 99999999999998699999999999999868998---999999999999878999999999999862986212---356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHH--------------------HHHHHHHH
Q ss_conf 434445555443111234589999999999985--20010134565555555--------------------66666665
Q gi|254781174|r 136 LVGMSYAQMIRDVPYDQRATKLMLQYMSRIVER--YTNSPYVKGARFYVTVG--------------------RNQLAAKE 193 (271)
Q Consensus 136 ~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~--yP~S~ya~~A~~~l~~~--------------------~~~La~~e 193 (271)
..|.+++.+ .+...+|+..|+..+.. +|+. ..+...+..+ ...-..--
T Consensus 81 ~l~~~~~~~-------~~~~~eA~~~~~~al~~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 150 (225)
T 2vq2_A 81 NYGWFLCGR-------LNRPAESMAYFDKALADPTYPTP---YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAF 150 (225)
T ss_dssp HHHHHHHTT-------TCCHHHHHHHHHHHHTSTTCSCH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHH-------HCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 478999998-------17507665668999972236304---68875268888885899999999999998689989999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 55666665443223456899988652899811599999999999974987999999999978569997899
Q gi|254781174|r 194 VEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWAR 264 (271)
Q Consensus 194 ~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~~~ 264 (271)
+.+|..|+..|++..|+..|+.++...|... ++++...+......|+.+.+..+...|..+||+|....
T Consensus 151 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~l~l~~~~~~~~~~~~~a~~~~~~l~~~~P~s~e~~ 219 (225)
T 2vq2_A 151 KELARTKMLAGQLGDADYYFKKYQSRVEVLQ--ADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 9999999994999999999999984288888--99999999999987999999999999987688999999