HHsearch results for GI: 254781174 and protein with PDBid: 3mkr_A
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.58 E-value=1.1e-12 Score=90.75 Aligned_cols=175 Identities=11% Similarity=0.061 Sum_probs=120.5
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 68999999999998098999999999998530477302689987788776545556799999887540112110135554
Q gi|254781174|r 56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYY 135 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y 135 (271)
.+...+..|..+...|++++|+..+++.. ...+....+.++...++++.|+..+++.++..|+++. +..
T Consensus 100 ~~~~~~~~a~~~~~~~~~~~Al~~~~~~~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~ 168 (291)
T 3mkr_A 100 NTTFLLMAASIYFYDQNPDAALRTLHQGD--------SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATL---TQL 168 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTCC--------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHCCC--------CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---HHH
T ss_conf 19999999999998799999999874536--------6555899999999869988899999999986425779---999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43444555544311123458999999999998520010134565555555666666655566666544322345689998
Q gi|254781174|r 136 LVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQL 215 (271)
Q Consensus 136 ~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~ 215 (271)
..|.++... ..+...+|+..++..+...|+++.+ . ...|..|.+.|++..|+..|+.
T Consensus 169 ~~~~~~~~~------~~~~~~~A~~~~~~~~~~~p~~~~~---~--------------~~la~~~~~~g~~~~A~~~~~~ 225 (291)
T 3mkr_A 169 ATAWVSLAA------GGEKLQDAYYIFQEMADKCSPTLLL---L--------------NGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHHHH------CTTHHHHHHHHHHHHHHHSCCCHHH---H--------------HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHC------CCCHHHHHHHHHHHHHHHHCCCHHH---H--------------HHHHHHHHHCCCHHHHHHHHHH
T ss_conf 983577750------5423999999888888750146999---9--------------8899999981988999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHCCCCHHHHHHH
Q ss_conf 865289981159999999999997498799999-9999978569997899999
Q gi|254781174|r 216 VLANYSDAEHAEEAMARLVEAYVALALMDEARE-VVSLIQERYPQGYWARYVE 267 (271)
Q Consensus 216 ~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~-~~~~l~~~yP~s~~~~~a~ 267 (271)
+++..|+.+ +++..++.++..+|..++|.+ +.+.+....|++.|.....
T Consensus 226 al~~~p~~~---~~~~~l~~~~~~~g~~~ea~~~~~~~l~~~~p~~~~~~~~~ 275 (291)
T 3mkr_A 226 ALDKDSGHP---ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYR 275 (291)
T ss_dssp HHHHCTTCH---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 998689999---99999999999869919999999999973499979999999