RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781174|ref|YP_003065587.1| outer membrane assembly
lipoprotein YfiO [Candidatus Liberibacter asiaticus str. psy62]
(271 letters)
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 59.0 bits (143), Expect = 1e-09
Identities = 21/124 (16%), Positives = 41/124 (33%), Gaps = 8/124 (6%)
Query: 58 REVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLG 117
R Y A LK + A + F +P +L Y+ +Q A +
Sbjct: 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQF 62
Query: 118 EEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKG 177
+ +++YP +G+S Y + Q + ++ +Y S +
Sbjct: 63 RDLVSRYPTHDKAAGGLLKLGLSQ--------YGEGKNTEAQQTLQQVATQYPGSDAARV 114
Query: 178 ARFY 181
A+
Sbjct: 115 AQER 118
Score = 52.9 bits (127), Expect = 8e-08
Identities = 30/133 (22%), Positives = 40/133 (30%), Gaps = 22/133 (16%)
Query: 101 AFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQ 160
AF GKY A+ L ++ YP Y +G SY Y R +L
Sbjct: 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESY--------YATRNFQLAEA 60
Query: 161 YMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANY 220
+V RY G +G G+ A Q V Y
Sbjct: 61 QFRDLVSRYPTHDKAAGGLLK--------------LGLSQYGEGKNTEAQQTLQQVATQY 106
Query: 221 SDAEHAEEAMARL 233
++ A A RL
Sbjct: 107 PGSDAARVAQERL 119
Score = 37.4 bits (87), Expect = 0.003
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 14/106 (13%)
Query: 159 LQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLA 218
Q +E Y N Y A ++ +G Y + A +F+ +++
Sbjct: 22 SQLFLSFLELYPNGVYTPNALYW--------------LGESYYATRNFQLAEAQFRDLVS 67
Query: 219 NYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWAR 264
Y + A + +L + EA++ + + +YP AR
Sbjct: 68 RYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAAR 113
Score = 31.3 bits (71), Expect = 0.22
Identities = 19/77 (24%), Positives = 27/77 (35%)
Query: 189 LAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEARE 248
+A + LK G+Y A F L Y + + A+ L E+Y A A
Sbjct: 1 MARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEA 60
Query: 249 VVSLIQERYPQGYWARY 265
+ RYP A
Sbjct: 61 QFRDLVSRYPTHDKAAG 77
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 57.6 bits (139), Expect = 3e-09
Identities = 40/276 (14%), Positives = 79/276 (28%), Gaps = 120/276 (43%)
Query: 8 AICIFEA--WA--YQLYKFALTIFFSIAVCFLVGWE--------------RQSSRDV--- 46
A+ I E W + + A+T+ F I G + S +
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFI------GVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 47 ---YLDSVTDVRYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARK---SLLMS 100
+ S++++ +E + Y N+ + P ++ SL+
Sbjct: 334 VPSPMLSISNLT--QEQVQD---------------YVNKTNSHLP---AGKQVEISLVNG 373
Query: 101 A--FVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGM-SYAQMIR-----D---VP 149
A V ++ P+S L G+ + + D +P
Sbjct: 374 AKNLV-----------------VSGPPQS--------LYGLNLTLRKAKAPSGLDQSRIP 408
Query: 150 YDQRATKLMLQYMSRIVERYT------NSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKR 203
+ +R KL + R+ +S + A + L V ++
Sbjct: 409 FSER--KL------KFSNRFLPVASPFHSHLLVPASDLI---NKDLVKNNVSFNAKDIQ- 456
Query: 204 GEYVAAIPRFQLVLANY--SD-AEHAEEAMARLVEA 236
IP V + SD + R+V+
Sbjct: 457 ------IP----VYDTFDGSDLRVLSGSISERIVDC 482
Score = 42.6 bits (100), Expect = 9e-05
Identities = 53/209 (25%), Positives = 86/209 (41%), Gaps = 47/209 (22%)
Query: 24 LTIFFSIAVCFLVGWER-QSSRDVY----LDSVTDVRYQ-----REVYEKAV--LFLKEQ 71
LTI F G E+ + R+ Y +++ D + + +E+ E + F E+
Sbjct: 1672 LTIHF--------GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723
Query: 72 NFSKAYEYFNQCSRDF----PFAGVARKSLLMS--AFVQYSAGKYQQAASLGEEYITQYP 125
A + F Q + F + K L+ + F +S G+Y ASL +
Sbjct: 1724 GLLSATQ-FTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLAD---VMSI 1779
Query: 126 ESKNVDYVYYLVGMSYAQMIRDVPYDQ--RATKLMLQYM-SRIVERYTNSPYVKGARFYV 182
ES V+ V+Y GM+ M VP D+ R+ M+ R+ ++ A YV
Sbjct: 1780 ESL-VEVVFYR-GMT---MQVAVPRDELGRSNYGMIAINPGRVAASFSQE-----ALQYV 1829
Query: 183 T--VGRNQLAAKEVEIGRYYLKRGEYVAA 209
VG+ VEI Y ++ +YVAA
Sbjct: 1830 VERVGKR--TGWLVEIVNYNVENQQYVAA 1856
Score = 32.6 bits (74), Expect = 0.088
Identities = 58/285 (20%), Positives = 98/285 (34%), Gaps = 125/285 (43%)
Query: 38 WERQSS--RDVYLDSVTDV-----------------RYQREVYEKAVLF-------LKEQ 71
W R + +D Y S+ D+ + RE Y A++F LK +
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS-AMIFETIVDGKLKTE 1704
Query: 72 NFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAA-SLGEEYITQYPESKNV 130
K ++ N+ S + F + K LL SA ++ Q A +L E+ + +SK +
Sbjct: 1705 ---KIFKEINEHSTSYTFR--SEKGLL-------SATQFTQPALTLMEKAAFEDLKSKGL 1752
Query: 131 ---DYVYYLVGMS---YAQM--IRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYV 182
D + G S YA + + DV + ++ + +V FY
Sbjct: 1753 IPADATF--AGHSLGEYAALASLADV--------MSIESLVEVV-------------FY- 1788
Query: 183 TVGRNQLAAKEVEIGRYYLKRGEYV-AAIPRFQLVLANYS---------DAEHAEEAMAR 232
RG + A+PR +L +NY A ++EA+
Sbjct: 1789 --------------------RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY 1828
Query: 233 LVE--------------------AYVA---LALMDEAREVVSLIQ 254
+VE YVA L +D V++ I+
Sbjct: 1829 VVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIK 1873
Score = 29.5 bits (66), Expect = 0.75
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 205 EYVAAIPRFQLVLANYSDAE-HAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWA 263
E+V +P A++ A E+ L E A DE L+ ++ GY +
Sbjct: 17 EHVLLVPT-----ASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG-KF-LGYVS 69
Query: 264 RYVE 267
VE
Sbjct: 70 SLVE 73
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 34.5 bits (78), Expect = 0.025
Identities = 23/206 (11%), Positives = 46/206 (22%), Gaps = 33/206 (16%)
Query: 60 VYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEE 119
V A +F Y+ + PF L + K + L +
Sbjct: 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHA---SCLPVHIGTLVELNKANELFYLSHK 81
Query: 120 YITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGAR 179
+ YP + ++ VG Y + + +R +
Sbjct: 82 LVDLYPSN---PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIA-------- 130
Query: 180 FYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVA 239
G + E+ A+ + + M + Y
Sbjct: 131 ----------------YGHSFAVESEHDQAMAAYFTAAQLM---KGCHLPMLYIGLEYGL 171
Query: 240 LALMDEAREVVSLIQERYPQGYWARY 265
A S P+ + +
Sbjct: 172 TNNSKLAERFFSQALSIAPEDPFVMH 197
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 2c0m_A 2c0l_A
Length = 368
Score = 34.5 bits (78), Expect = 0.026
Identities = 29/228 (12%), Positives = 60/228 (26%), Gaps = 29/228 (12%)
Query: 61 YEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEY 120
+E+ + L+E + A F + P A + L Q + A S
Sbjct: 68 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYL---GTTQAENEQELLAISALRRC 124
Query: 121 ITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARF 180
+ P+++ + + + + + + Y + +
Sbjct: 125 LELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS 184
Query: 181 YVTVGRNQLAAKEVEIGRYYLK-----------------------RGEYVAAIPRFQLVL 217
+G + +E+ +L GEY A+ F L
Sbjct: 185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244
Query: 218 ANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWARY 265
+ + +L +EA E P +RY
Sbjct: 245 SVRPN---DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 289
Score = 27.6 bits (60), Expect = 3.4
Identities = 8/94 (8%), Positives = 29/94 (30%), Gaps = 11/94 (11%)
Query: 61 YEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEY 120
+ +A + + P +R +L + G +++A E
Sbjct: 255 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL---GISCINLGAHREAVEHFLEA 311
Query: 121 ITQYPESKNVDY--------VYYLVGMSYAQMIR 146
+ +S+ ++ + ++ + + +
Sbjct: 312 LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 31.7 bits (71), Expect = 0.18
Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 6/86 (6%)
Query: 59 EVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGE 118
E+ +A + K +++ A ++++Q P + + + Y A
Sbjct: 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNR---SLAYLRTECYGYALGDAT 64
Query: 119 EYITQYPESKNVDYVYYLVGMSYAQM 144
I + YY S +
Sbjct: 65 RAIELDKKYIK---GYYRRAASNMAL 87
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 31.5 bits (70), Expect = 0.21
Identities = 25/224 (11%), Positives = 49/224 (21%), Gaps = 16/224 (7%)
Query: 41 QSSRDVYLDSVTDVRYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMS 100
Q++ D ++ Y E+ + LK N ++A F + P A +SL
Sbjct: 5 QNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL--- 61
Query: 101 AFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQ 160
Q K A P+ V + + + + Q
Sbjct: 62 GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121
Query: 161 YMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANY 220
Y + ++ EY L
Sbjct: 122 YEQLGSVNLQADVDIDDLNVQ-------------SEDFFFAAPNEYRECRTLLHAALEMN 168
Query: 221 SDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWAR 264
+ ++ L ++ Q +
Sbjct: 169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKL 212
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 31.3 bits (70), Expect = 0.27
Identities = 20/167 (11%), Positives = 48/167 (28%), Gaps = 18/167 (10%)
Query: 61 YEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEY 120
+ + VL ++++ A + F+ + +A
Sbjct: 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRI------CFNIGCMYTILKNMTEA------- 56
Query: 121 ITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARF 180
+ S N D + + A K + + + ++ + G +F
Sbjct: 57 EKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF 116
Query: 181 YVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAE 227
+ I Y K+ E+ A + L + S+ H++
Sbjct: 117 -----KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSK 158
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, unfolded protein
response; 2.51A {Mus musculus}
Length = 359
Score = 30.5 bits (68), Expect = 0.45
Identities = 21/173 (12%), Positives = 39/173 (22%), Gaps = 16/173 (9%)
Query: 61 YEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEY 120
E L + A F+ P +A A V + GK + A +
Sbjct: 7 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRR---ATVFLAMGKSKAALPDLTKV 63
Query: 121 ITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARF 180
I + ++ A + + +N +
Sbjct: 64 IALKMDFTAARL-------QRGHLLLKQGKLDEAEDDFKKVL------KSNPSEQEEKEA 110
Query: 181 YVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARL 233
+ + + +Y AAI +L E A
Sbjct: 111 ESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAEC 163
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural
genomics, PSI, protein structure initiative; 2.40A
{Vibrio parahaemolyticus rimd 2210633} SCOP: e.61.1.1
Length = 273
Score = 29.4 bits (65), Expect = 1.0
Identities = 8/69 (11%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
Query: 197 GRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQER 256
+ L G+ A+ + + + A + +E + A E + +
Sbjct: 4 WKNALSEGQLQQALELLIEAIK--ASPKDA-SLRSSFIELLCIDGDFERADEQLMQSIKL 60
Query: 257 YPQGYWARY 265
+P+
Sbjct: 61 FPEYLPGAS 69
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 28.7 bits (63), Expect = 1.5
Identities = 19/160 (11%), Positives = 38/160 (23%), Gaps = 21/160 (13%)
Query: 104 QYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMS 163
S G Y + L E + + +Y L +S A + + M
Sbjct: 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV 378
Query: 164 RIVERYT--NSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYS 221
+ N+ + A G G A
Sbjct: 379 DGYMKLYHHNNAQLGMAVMR--------------AGLTNWHAGHIEVGHGMICKAYAILL 424
Query: 222 DA---EHAE--EAMARLVEAYVALALMDEAREVVSLIQER 256
H + A ++ + L + + + ++E
Sbjct: 425 VTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.9
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 209 AIPRFQLVLANYSDAEHAEEAMARLVEA 236
A+ + Q L Y+D + A A+A ++A
Sbjct: 21 ALKKLQASLKLYAD-DSA-PALA--IKA 44
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein
complex I, protein TRAN; 2.90A {Saccharomyces
cerevisiae} PDB: 3mv3_B
Length = 310
Score = 28.0 bits (61), Expect = 2.2
Identities = 13/155 (8%), Positives = 44/155 (28%), Gaps = 10/155 (6%)
Query: 104 QYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMS 163
Y G + Q E++ + + + + + Y + L +
Sbjct: 23 NYYTGNFVQCLQEIEKFSKVTDN-----TLLFYKAKTLLALGQ---YQSQDPTSKLGKVL 74
Query: 164 RIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDA 223
+ ++ ++ ++ + +N + G+ ++ + + +A
Sbjct: 75 DLYVQFLDTKNIEELENLLKDKQNSPYEL-YLLATAQAILGDLDKSLETCVEGI-DNDEA 132
Query: 224 EHAEEAMARLVEAYVALALMDEAREVVSLIQERYP 258
E E + +E + + A +
Sbjct: 133 EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A
Length = 457
Score = 27.9 bits (61), Expect = 2.2
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 196 IGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQE 255
+ YLK EY A+ L S E+ + R EA + + + A+ + E
Sbjct: 323 LAMCYLKLREYTKAVECCDKALGLDSA---NEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379
Query: 256 RYPQGYWARY 265
PQ AR
Sbjct: 380 VNPQNKAARL 389
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric regulation, phosphoprotein,
TPR repeat; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A
3fp4_A
Length = 537
Score = 27.4 bits (59), Expect = 3.6
Identities = 11/80 (13%), Positives = 26/80 (32%), Gaps = 3/80 (3%)
Query: 186 RNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDE 245
R A + G ++ + AI +Q + + + + Y++ +++
Sbjct: 21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN---EPVFYSNISACYISTGDLEK 77
Query: 246 AREVVSLIQERYPQGYWARY 265
E + E P A
Sbjct: 78 VIEFTTKALEIKPDHSKALL 97
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 27.5 bits (60), Expect = 3.8
Identities = 12/68 (17%), Positives = 17/68 (25%), Gaps = 2/68 (2%)
Query: 198 RYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERY 257
+ G Y I Q V + E E L AY+A + +
Sbjct: 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPE 64
Query: 258 PQGYWARY 265
Q
Sbjct: 65 LQAVRMFA 72
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain
movement; HET: MES; 2.10A {Bacillus stearothermophilus}
SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Length = 433
Score = 27.1 bits (59), Expect = 4.4
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 8/56 (14%)
Query: 202 KRGEYVAA-IPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQER 256
K G+ V + +S+ + ++ A L + LI E
Sbjct: 383 KIGDRVQKGEALATI----HSNRPDVLDVKEKIEAAIR---LSPQPVARPPLIYET 431
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase;
pyrimidine-nucleoside phosphorylase, structural
genomics, NPPSFA; 1.80A {Thermus thermophilus HB8}
Length = 423
Score = 26.7 bits (58), Expect = 6.2
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 7/55 (12%)
Query: 202 KRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQER 256
K G+ V + + Y EEA+ L EAY + E L+ E
Sbjct: 375 KPGDRVER---GEALALVYHRRRGLEEALGHLREAYA----LGEEAHPAPLVLEA 422
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 26.6 bits (58), Expect = 6.8
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 138 GMSYAQMIRDVPYDQRATKLMLQYMSRI 165
GM+ Q+ V + KL L R
Sbjct: 235 GMTDEQVHAFVDRYMPSYKLYLNDFVRS 262
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 26.3 bits (57), Expect = 8.1
Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Query: 61 YEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSL----LMSAFVQYSAGKYQQAASL 116
+ A L + + +A + +++ + +++ SL L Q +A AA
Sbjct: 162 IKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART 221
Query: 117 GEEYITQYPESKNVDYVYYLVGMSYAQMIRDV 148
+E ++ P + +L + A D
Sbjct: 222 LQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.324 0.135 0.393
Gapped
Lambda K H
0.267 0.0446 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,286,176
Number of extensions: 101597
Number of successful extensions: 582
Number of sequences better than 10.0: 1
Number of HSP's gapped: 561
Number of HSP's successfully gapped: 62
Length of query: 271
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 180
Effective length of database: 3,487,026
Effective search space: 627664680
Effective search space used: 627664680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.1 bits)