BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781174|ref|YP_003065587.1| outer membrane assembly
lipoprotein YfiO [Candidatus Liberibacter asiaticus str. psy62]
         (271 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781174|ref|YP_003065587.1| outer membrane assembly lipoprotein YfiO [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 271

 Score =  550 bits (1418), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 271/271 (100%), Positives = 271/271 (100%)

Query: 1   MSAVLGRAICIFEAWAYQLYKFALTIFFSIAVCFLVGWERQSSRDVYLDSVTDVRYQREV 60
           MSAVLGRAICIFEAWAYQLYKFALTIFFSIAVCFLVGWERQSSRDVYLDSVTDVRYQREV
Sbjct: 1   MSAVLGRAICIFEAWAYQLYKFALTIFFSIAVCFLVGWERQSSRDVYLDSVTDVRYQREV 60

Query: 61  YEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEY 120
           YEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEY
Sbjct: 61  YEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEY 120

Query: 121 ITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARF 180
           ITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARF
Sbjct: 121 ITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARF 180

Query: 181 YVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVAL 240
           YVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVAL
Sbjct: 181 YVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVAL 240

Query: 241 ALMDEAREVVSLIQERYPQGYWARYVETLVK 271
           ALMDEAREVVSLIQERYPQGYWARYVETLVK
Sbjct: 241 ALMDEAREVVSLIQERYPQGYWARYVETLVK 271


>gi|254780952|ref|YP_003065365.1| DNA helicase II [Candidatus Liberibacter asiaticus str. psy62]
          Length = 685

 Score = 23.5 bits (49), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 71  QNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFV 103
           QNF K    +N CS+    A +A   L  S ++
Sbjct: 484 QNFVKDIRRWNNCSKKMDPAPIANMILEQSGYM 516


>gi|254780939|ref|YP_003065352.1| type I signal peptidase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 248

 Score = 22.7 bits (47), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 7/23 (30%), Positives = 16/23 (69%)

Query: 117 GEEYITQYPESKNVDYVYYLVGM 139
           G+  + +YP+  ++DYV  ++G+
Sbjct: 88  GDVVVFRYPKDPSIDYVKRVIGL 110


>gi|254781061|ref|YP_003065474.1| putative iron-sulfur cluster assembly protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 428

 Score = 22.7 bits (47), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 7/43 (16%)

Query: 129 NVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTN 171
           N +++YYL       M R +  +Q  + L   +MS IVE   +
Sbjct: 368 NPEHLYYL-------MARGISKNQACSMLSHAFMSEIVEDLND 403


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.324    0.135    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,028
Number of Sequences: 1233
Number of extensions: 5754
Number of successful extensions: 22
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 8
length of query: 271
length of database: 328,796
effective HSP length: 73
effective length of query: 198
effective length of database: 238,787
effective search space: 47279826
effective search space used: 47279826
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 37 (18.9 bits)