HHsearch alignment for GI: 254781175 and conserved domain: pfam03331
>pfam03331 LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase. The enzymes in this family catalyse the second step in the biosynthetic pathway for lipid A.
Probab=100.00 E-value=0 Score=779.66 Aligned_cols=275 Identities=41% Similarity=0.691 Sum_probs=268.4
Q ss_pred CCCHHHCCEEEEEEEEECCCCEEEEEEEECCCCCCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCCCEEEEEEHHHHH
Q ss_conf 01711075199999970379778999983788871899980568888626310998666322013476315886489989
Q gi|254781175|r 8 RLQHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTLSTTIGSSSCQVRTIEHLM 87 (296)
Q Consensus 8 ~~Q~Ti~~~v~~~GiGLHsG~~~~i~l~PA~~~~GI~F~R~dl~~~~~~I~A~~~~V~~t~~~T~L~~~~~~V~TVEHLL 87 (296)
T Consensus 1 mkQ~Ti~~~v~~~GiGLHsG~~v~v~l~PA~~~tGI~F~R~Dl~~-~~~I~a~~~~V~~t~~~T~l~~~~~~V~TvEHLl 79 (276)
T pfam03331 1 MKQRTLKRPVSVSGVGLHTGKKSTLTLEPAKENTGIVFQRTDLSP-YPIIPARPENVRDTMLSTTLGNDGARISTVEHLL 79 (276)
T ss_pred CCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEECCCC-CCEEEECHHHCCCHHHHCEEECCCCEEEEHHHHH
T ss_conf 976356870799999835796888999958999858999924999-9379855667116002103405995997299999
Q ss_pred HHHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEECCEEEEEECCCCCEEEEEEEE
Q ss_conf 99987200059999648878300582899999885445544478751477046349981771465414766337899970
Q gi|254781175|r 88 AALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTLTAKRRYLRIIKSVRITSGESWAEFSPHCSMRFEISIEF 167 (296)
Q Consensus 88 AAL~glgIDN~~Ieidg~EiPIlDGSA~~fv~~i~~aGi~eq~~~r~~~~i~~~v~v~~~~~~i~~~P~~~l~i~~~idf 167 (296)
T Consensus 80 AAL~glgIDN~~Ieidg~EvPIlDGSa~~fv~~i~~aGi~eq~~~r~~~~i~~~v~v~~~~~~i~~~P~~~~~i~~~idf 159 (276)
T pfam03331 80 AALAGLGIDNLIIEVDGPEIPIMDGSALPFVELIDQAGIKEQEAAKKIIRIKEPVYVQDGDKFLAAFPSDGLKISYTIDF 159 (276)
T ss_pred HHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEECCEEEEEECCCCCEEEEEEEC
T ss_conf 99997698639999799788833787899999999709876677541478556089998999999976899779999987
Q ss_pred CCCCCC-CCCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCCCCCCCCEEEECCCCEECCCCCCCCCCCCCHHHH
Q ss_conf 884313-0002345545778985146503222025788864200032133464564137733106774789972001148
Q gi|254781175|r 168 KNSIIG-FQKWAGDLTQTVFRNEIYAARTFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGLRYSGEEFVRHKT 246 (296)
Q Consensus 168 ~~~~Ig-~Q~~~~~~~~~~f~~eIa~ARTF~~~~eie~L~~~Gl~~Ggsl~NaiVi~~~~~i~n~~~LR~~~dE~vRHKi 246 (296)
T Consensus 160 ~~~~ig~~Q~~~~~~~~~~f~~eIa~ARTF~f~~eve~L~~~GL~kGgsl~NaiVi~~-~~vlN~~gLR~~-dE~vRHKi 237 (276)
T pfam03331 160 KHPAIGKSQWYSFVFSQESFRKEIAPARTFGFMREIEYLRSKGLIKGGSLENAIVFDD-DKVLNPPGLRFE-DEPVRHKI 237 (276)
T ss_pred CCCCCCCCEEEEEEECCHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCCCHHHEEEECC-CCCCCCCCCCCC-CCCCCHHH
T ss_conf 9976575238999766514687750665255099999998779502336789367348-838489887787-81116558
Q ss_pred HHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 999898997599646899997788089999999998096
Q gi|254781175|r 247 LDAIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADK 285 (296)
Q Consensus 247 LDlIGDL~L~G~pi~g~i~a~k~GH~ln~~l~~~l~~~~ 285 (296)
T Consensus 238 LDlIGDL~L~G~pi~G~i~a~k~GH~ln~~l~k~l~~dk 276 (276)
T pfam03331 238 LDLIGDLYLLGVPVIGHFIAYKSGHSLNNQLVQKILADQ 276 (276)
T ss_pred HHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHCCC
T ss_conf 888878986599836999998787699999999987389