Query gi|254781175|ref|YP_003065588.1| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 296 No_of_seqs 133 out of 1538 Neff 5.4 Searched_HMMs 33803 Date Wed Jun 1 23:27:14 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781175.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2ves_A UDP-3-O-[3-hydroxymyri 100.0 0 0 388.7 9.7 125 9-134 3-127 (153) 2 >1p42_A UDP-3-O-[3-hydroxymyri 100.0 0 0 335.4 6.8 118 9-131 2-119 (119) 3 >1p42_A UDP-3-O-[3-hydroxymyri 100.0 5.4E-30 1.6E-34 207.7 11.6 111 134-289 2-112 (112) 4 >2ves_A UDP-3-O-[3-hydroxymyri 99.9 4.5E-24 1.3E-28 170.7 9.6 94 133-295 1-96 (107) 5 >2ves_A UDP-3-O-[3-hydroxymyri 99.3 8E-13 2.4E-17 100.4 3.3 39 195-234 1-39 (39) 6 >1p42_A UDP-3-O-[3-hydroxymyri 99.3 8.6E-13 2.6E-17 100.2 3.3 39 195-234 1-39 (39) 7 >3bbn_E Ribosomal protein S5; 64.7 5.3 0.00016 20.3 2.7 17 29-45 13-29 (69) 8 >2zkq_e 40S ribosomal protein 61.2 6.7 0.0002 19.6 2.7 17 29-45 17-33 (98) 9 >1pkp_A Ribosomal protein S5; 61.2 6.7 0.0002 19.6 2.7 16 29-44 13-28 (72) 10 >2vqe_E 30S ribosomal protein 56.5 15 0.00043 17.5 4.3 37 2-44 65-101 (143) 11 >3i1m_E 30S ribosomal protein 54.7 13 0.00038 17.8 3.3 37 2-44 70-106 (167) 12 >3lp8_A Phosphoribosylamine-gl 53.2 16 0.00049 17.2 4.0 151 79-240 68-222 (351) 13 >1d2n_A N-ethylmaleimide-sensi 52.2 9.9 0.00029 18.6 2.3 17 80-96 2-18 (76) 14 >3jyv_E 40S ribosomal protein 49.2 9.1 0.00027 18.8 1.8 17 29-45 16-32 (88) 15 >1j98_A Autoinducer-2 producti 46.9 3.4 0.0001 21.5 -0.7 81 41-124 17-108 (157) 16 >1j6x_A Autoinducer-2 producti 45.8 7.2 0.00021 19.4 0.8 46 79-124 53-104 (160) 17 >1j6w_A Autoinducer-2 producti 45.5 4.3 0.00013 20.8 -0.4 81 41-124 17-107 (175) 18 >1vje_A Autoinducer-2 producti 42.8 5.7 0.00017 20.1 -0.1 46 79-124 55-106 (166) 19 >2qbw_A PDZ-fibronectin fusion 42.7 9.4 0.00028 18.7 1.0 52 73-126 21-72 (102) 20 >1wf7_A Enigma homologue prote 30.0 35 0.001 15.2 2.2 75 26-126 3-78 (103) 21 >1o98_A 2,3-bisphosphoglycerat 27.8 42 0.0012 14.7 5.2 68 54-124 20-96 (238) 22 >1u5t_B Defective in vacuolar 27.4 24 0.00071 16.2 1.0 35 240-290 3-39 (74) 23 >2ip4_A PURD, phosphoribosylam 25.1 47 0.0014 14.4 4.5 161 82-255 49-238 (348) 24 >3ijw_A Aminoglycoside N3-acet 23.6 50 0.0015 14.2 4.8 44 81-124 1-47 (254) 25 >2nyg_A YOKD protein; PFAM0252 23.5 50 0.0015 14.2 4.8 44 81-124 1-47 (261) 26 >3efc_A OMP85, outer membrane 23.1 51 0.0015 14.1 3.3 67 37-109 1-69 (73) 27 >2csj_A TJP2 protein; PDZ doma 22.3 53 0.0016 14.0 2.9 53 72-126 42-94 (117) 28 >2dy1_A Elongation factor G; t 22.2 53 0.0016 14.0 5.0 100 9-124 3-106 (133) 29 >2vvf_A Major capsid protein P 22.2 8.8 0.00026 18.9 -2.0 34 81-114 97-133 (139) 30 >3cfy_A Putative LUXO represso 21.6 55 0.0016 13.9 2.1 57 67-125 18-74 (137) 31 >1w7p_D VPS36P, YLR417W; ESCRT 20.8 26 0.00077 15.9 0.2 35 240-290 3-39 (76) No 1 >>2ves_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; LPXC, hydrolase, BB-78485, antibiotics, lipid synthesis, metalloprotease; HET: GVR; 1.90A {Pseudomonas aeruginosa} (A:1-125,A:182-189,A:229-248) Probab=100.00 E-value=0 Score=388.71 Aligned_cols=125 Identities=41% Similarity=0.608 Sum_probs=121.2 Q ss_pred CCHHHCCEEEEEEEEECCCCEEEEEEEECCCCCCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCCCEEEEEEHHHHHH Q ss_conf 17110751999999703797789999837888718999805688886263109986663220134763158864899899 Q gi|254781175|r 9 LQHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTLSTTIGSSSCQVRTIEHLMA 88 (296) Q Consensus 9 ~Q~Ti~~~v~~~GiGLHsG~~~~i~l~PA~~~~GI~F~R~dl~~~~~~I~A~~~~V~~t~~~T~L~~~~~~V~TVEHLLA 88 (296) +|+||+++++|+|+|||||++|+++|+||++|+||+|+|+|+++ .+.|||+++||.+|.|||+|++++.+|+||||||| T Consensus 3 ~Q~TI~~~v~~~GiGLHSG~~v~v~l~PA~~~tGI~F~R~Dl~~-~~~I~A~~~~V~~t~l~T~L~~~~~~V~TVEHLLA 81 (153) T 2ves_A 3 KQRTLKNIIRATGVGLHSGEKVYLTLKPAPVDTGIVFSRTDLDP-VVEIPARAENVGETTMSTTLVKGDVKVDTVEHLLS 81 (153) T ss_dssp EEEEESSCEEEEEECTTTCSEEEEEEEECCTTCCEEEEETTSSS-CEEEECCGGGBCCCSSSCCEEETTEEEBCCHHHHH T ss_pred CCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCC-CCEECCCHHHCCCCCCEEEEEECEEEEEEHHHHHH T ss_conf 87346862899999835795789999989999869999905999-82303678881466653686413058860788898 Q ss_pred HHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC Q ss_conf 9987200059999648878300582899999885445544478751 Q gi|254781175|r 89 ALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTLTAKRR 134 (296) Q Consensus 89 AL~glgIDN~~Ieidg~EiPIlDGSA~~fv~~i~~aGi~eq~~~r~ 134 (296) ||+|||||||+||+||+|+|||||||++||++|++||+++|+++.+ T Consensus 82 AL~glGIDN~~Ieidg~EiPIlDGSA~~fv~ai~~aGi~eq~~~~~ 127 (153) T 2ves_A 82 AMAGLGIDNAYVELSASEVPIMDGSAGPFVFLIQSAGLQEQEAAVK 127 (153) T ss_dssp HHHHHTCCCEEEEESSSBCCCTTSSSHHHHHHHHHHCEEEEEEEHH T ss_pred HHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHH T ss_conf 9874270179999168987453643189999998628731013499 No 2 >>1p42_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; alpha+beta fold, hydrophobic tunnel, hydrolase; HET: MYR; 2.00A {Aquifex aeolicus} (A:1-119) Probab=100.00 E-value=0 Score=335.41 Aligned_cols=118 Identities=32% Similarity=0.528 Sum_probs=114.9 Q ss_pred CCHHHCCEEEEEEEEECCCCEEEEEEEECCCCCCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCCCEEEEEEHHHHHH Q ss_conf 17110751999999703797789999837888718999805688886263109986663220134763158864899899 Q gi|254781175|r 9 LQHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTLSTTIGSSSCQVRTIEHLMA 88 (296) Q Consensus 9 ~Q~Ti~~~v~~~GiGLHsG~~~~i~l~PA~~~~GI~F~R~dl~~~~~~I~A~~~~V~~t~~~T~L~~~~~~V~TVEHLLA 88 (296) ||+||+++++++|+|||||++++|+|+||++|+||+|+|+|+ .|||+++||.+|.|||+|++++.+|+||||||| T Consensus 2 ~Q~Tl~~~v~~~GiGLHsG~~v~v~l~Pa~~~~Gi~F~r~d~-----~i~a~~~~v~~t~l~T~L~~~~~~V~TVEHllA 76 (119) T 1p42_A 2 LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGV-----YIPARHEFVVHTNHSTDLGFKGQRIKTVEHILS 76 (119) T ss_dssp EEEEESSCEEEEEECTTTCCEEEEEEEECCTTCCEEEEETTE-----EEESSGGGEEECSSSCEEEETTEEEBCCHHHHH T ss_pred CCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEECCC-----CCCCCHHHCCCCCCCCCCCCCCCEEEEHHHHHH T ss_conf 875668757999898047967899999279996899984891-----067868650065222023128979987999999 Q ss_pred HHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCC Q ss_conf 9987200059999648878300582899999885445544478 Q gi|254781175|r 89 ALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTLTA 131 (296) Q Consensus 89 AL~glgIDN~~Ieidg~EiPIlDGSA~~fv~~i~~aGi~eq~~ 131 (296) ||+|||||||+||+||+|+|||||||++|+++|++||++||++ T Consensus 77 AL~~~gIDN~~Iev~g~EvPIlDGSa~~fv~~i~~aGi~eq~~ 119 (119) T 1p42_A 77 VLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKNILNQNRE 119 (119) T ss_dssp HHHHTTCCSEEEEEESSBCCCTTSSSHHHHHHHHTTEEEEEEE T ss_pred HHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCHHHCCC T ss_conf 9997798059999699867778986588998762100121134 No 3 >>1p42_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; alpha+beta fold, hydrophobic tunnel, hydrolase; HET: MYR; 2.00A {Aquifex aeolicus} (A:120-177,A:217-270) Probab=99.97 E-value=5.4e-30 Score=207.70 Aligned_cols=111 Identities=29% Similarity=0.424 Sum_probs=98.0 Q ss_pred CEEEECCCEEEEECCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCC Q ss_conf 14770463499817714654147663378999708843130002345545778985146503222025788864200032 Q gi|254781175|r 134 RYLRIIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIGFQKWAGDLTQTVFRNEIYAARTFGFLRDVERYRKAGCALG 213 (296) Q Consensus 134 ~~~~i~~~v~v~~~~~~i~~~P~~~l~i~~~idf~~~~Ig~Q~~~~~~~~~~f~~eIa~ARTF~~~~eie~L~~~Gl~~G 213 (296) .|+++.+|+.|+|+++.+.+.|||.+.++|.-+|++ ++|+|.+++.-.++ + T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~------------------------- 52 (112) T 1p42_A 2 DYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKN-FLGRQKFTFVEGNE---E------------------------- 52 (112) T ss_dssp CCEECCSCEEEEETTEEEEEECCSSCEEEEEEECSS-TTCEEEEEEETTCG---G------------------------- T ss_pred CCEEEECEEEEEECCCEEECCCCCCCEEEEEEECCC-CCCCEEEEECCCCH---H------------------------- T ss_conf 415762208987157423037997635999996366-66522662025535---6------------------------- Q ss_pred CCCCCCEEEECCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCE Q ss_conf 1334645641377331067747899720011489998989975996468999977880899999999980966715 Q gi|254781175|r 214 ASLENSVVISEDDQVMNHGGLRYSGEEFVRHKTLDAIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDSYE 289 (296) Q Consensus 214 gsl~NaiVi~~~~~i~n~~~LR~~~dE~vRHKiLDlIGDL~L~G~pi~g~i~a~k~GH~ln~~l~~~l~~~~~~~~ 289 (296) -+| +. -||+ |||||||+||+||||||+|+|++|||+|+||||++|++|+++|++++++|+ T Consensus 53 -----~~~-------~~---~Rf~-DEfVRHKILDlIGDLaLlG~pI~GhiiA~KsGH~LN~~Lvk~L~~~~~ayr 112 (112) T 1p42_A 53 -----EIV-------LA---RRYE-NEPVRHKVFDLIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQKLTR 112 (112) T ss_dssp -----GTT-------TC---CSST-THHHHHHHHHHHHHHGGGSSCEECEEEEESCCHHHHHHHHHHHHHTTC--- T ss_pred -----HHH-------HC---CCCC-CCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCC T ss_conf -----654-------33---6678-831055688988789875997069999987882999999999973466409 No 4 >>2ves_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; LPXC, hydrolase, BB-78485, antibiotics, lipid synthesis, metalloprotease; HET: GVR; 1.90A {Pseudomonas aeruginosa} (A:126-181,A:249-299) Probab=99.91 E-value=4.5e-24 Score=170.71 Aligned_cols=94 Identities=30% Similarity=0.557 Sum_probs=85.9 Q ss_pred CCEEEECCCEEEEECCEEEEEECCCCCEEEEEEEECCCCCCC--CCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHCCC Q ss_conf 514770463499817714654147663378999708843130--002345545778985146503222025788864200 Q gi|254781175|r 133 RRYLRIIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIGF--QKWAGDLTQTVFRNEIYAARTFGFLRDVERYRKAGC 210 (296) Q Consensus 133 r~~~~i~~~v~v~~~~~~i~~~P~~~l~i~~~idf~~~~Ig~--Q~~~~~~~~~~f~~eIa~ARTF~~~~eie~L~~~Gl 210 (296) |++++|+|||+|++|++|+.+.|+|+|+++|+|||+||+||+ |++++++++++| T Consensus 1 Rr~i~I~kpV~V~~gdk~v~l~P~dgfri~f~IDF~hpaIG~q~Q~~~~d~s~~~F------------------------ 56 (107) T 2ves_A 1 KKFIRIKREVSVEEGDKRAVFVPFDGFKVSFEIDFDHPVFRGRTQQASVDFSSTSF------------------------ 56 (107) T ss_dssp CCEEEECSCEEEEETTEEEEEECCSSEEEEEECCCCSTTTTTSCCEEEEETTTCCH------------------------ T ss_pred CEEEEEEEEEEEEECCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCH------------------------ T ss_conf 35888655799970864799951689789999973764225662299996277306------------------------ Q ss_pred CCCCCCCCCEEEECCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCEE Q ss_conf 03213346456413773310677478997200114899989899759964689999778808999999999809667156 Q gi|254781175|r 211 ALGASLENSVVISEDDQVMNHGGLRYSGEEFVRHKTLDAIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDSYEI 290 (296) Q Consensus 211 ~~Ggsl~NaiVi~~~~~i~n~~~LR~~~dE~vRHKiLDlIGDL~L~G~pi~g~i~a~k~GH~ln~~l~~~l~~~~~~~~~ 290 (296) +|+||.|++.++|+||+||++|+++|++|++|||+ T Consensus 57 ---------------------------------------------~G~pi~G~~~~~k~gH~lN~~ll~~l~~d~~~~e~ 91 (107) T 2ves_A 57 ---------------------------------------------LGNSLIGEFRGFKSGHALNNQLLRTLIADKDAWEV 91 (107) T ss_dssp ---------------------------------------------GSSEEEEEEEEESCCHHHHHHHHHHHHHCGGGEEE T ss_pred ---------------------------------------------CCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCEEE T ss_conf ---------------------------------------------49963799999878848999999999729775389 Q ss_pred EECCC Q ss_conf 62078 Q gi|254781175|r 291 VDDHG 295 (296) Q Consensus 291 v~~~~ 295 (296) |+... T Consensus 92 v~~~~ 96 (107) T 2ves_A 92 VTFED 96 (107) T ss_dssp ECCSS T ss_pred EECCC T ss_conf 97466 No 5 >>2ves_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; LPXC, hydrolase, BB-78485, antibiotics, lipid synthesis, metalloprotease; HET: GVR; 1.90A {Pseudomonas aeruginosa} (A:190-228) Probab=99.31 E-value=8e-13 Score=100.38 Aligned_cols=39 Identities=49% Similarity=0.917 Sum_probs=36.7 Q ss_pred EEEEEHHHHHHHHCCCCCCCCCCCCEEEECCCCEECCCCC Q ss_conf 3222025788864200032133464564137733106774 Q gi|254781175|r 195 TFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGL 234 (296) Q Consensus 195 TF~~~~eie~L~~~Gl~~Ggsl~NaiVi~~~~~i~n~~~L 234 (296) ||||++|+|+|+++|||||||||||||++ +++|+|++|| T Consensus 1 TFgf~~eve~L~~~GLa~GGSLdNAiVi~-~~~vln~~GL 39 (39) T 2ves_A 1 TFGFMRDIEYLRSQNLALGGSVENAIVVD-ENRVLNEDGL 39 (39) T ss_dssp CEEEHHHHHHHHHTTCSTTCSTTSSEEEC-SSSBCSTTCC T ss_pred CCCHHHHHHHHHHCCCCCCCCCCEEEEEC-CCCEECCCCC T ss_conf 51069999999862841355641359960-8815078777 No 6 >>1p42_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; alpha+beta fold, hydrophobic tunnel, hydrolase; HET: MYR; 2.00A {Aquifex aeolicus} (A:178-216) Probab=99.31 E-value=8.6e-13 Score=100.18 Aligned_cols=39 Identities=41% Similarity=0.691 Sum_probs=36.7 Q ss_pred EEEEEHHHHHHHHCCCCCCCCCCCCEEEECCCCEECCCCC Q ss_conf 3222025788864200032133464564137733106774 Q gi|254781175|r 195 TFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGL 234 (296) Q Consensus 195 TF~~~~eie~L~~~Gl~~Ggsl~NaiVi~~~~~i~n~~~L 234 (296) ||||++|+|+|+++|||||||||||||++ +++|+||+|| T Consensus 1 TFgf~~die~L~~~GL~~GGSLeNAiV~~-~~~vln~~GL 39 (39) T 1p42_A 1 TFAFDWEIEHIKKVGLGKGGSLKNTLVLG-KDKVYNPEGL 39 (39) T ss_dssp CEEEHHHHHHHHHTTCCTTCCTTTCEEEC-SSCBCSTTCC T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCEEEC-CCCCCCCCCC T ss_conf 14429999999976985564523436863-7754268777 No 7 >>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (E:221-289) Probab=64.67 E-value=5.3 Score=20.27 Aligned_cols=17 Identities=35% Similarity=0.606 Sum_probs=14.8 Q ss_pred EEEEEEEECCCCCCEEE Q ss_conf 78999983788871899 Q gi|254781175|r 29 RANLKLCPAPEGVGILF 45 (296) Q Consensus 29 ~~~i~l~PA~~~~GI~F 45 (296) .++|.++|||+++|++= T Consensus 13 s~~v~l~Pap~G~Glia 29 (69) T 3bbn_E 13 AARVMLRPAAPGTGVIA 29 (69) T ss_dssp TEEEEEEECCTTCCEEC T ss_pred CEEEEEECCCCCCCEEC T ss_conf 22577705899965006 No 8 >>2zkq_e 40S ribosomal protein S2E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (e:82-179) Probab=61.19 E-value=6.7 Score=19.64 Aligned_cols=17 Identities=41% Similarity=0.796 Sum_probs=14.6 Q ss_pred EEEEEEEECCCCCCEEE Q ss_conf 78999983788871899 Q gi|254781175|r 29 RANLKLCPAPEGVGILF 45 (296) Q Consensus 29 ~~~i~l~PA~~~~GI~F 45 (296) .++|.++|||+++|++= T Consensus 17 s~~v~l~PAp~G~Gl~a 33 (98) T 2zkq_e 17 SVPVRLIPAPRGTGIVS 33 (98) T ss_dssp TEEEEEEECCTTCCEEC T ss_pred CEEEEEECCCCCCCEEC T ss_conf 68889864887466472 No 9 >>1pkp_A Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus} (A:79-150) Probab=61.17 E-value=6.7 Score=19.64 Aligned_cols=16 Identities=38% Similarity=0.746 Sum_probs=14.2 Q ss_pred EEEEEEEECCCCCCEE Q ss_conf 7899998378887189 Q gi|254781175|r 29 RANLKLCPAPEGVGIL 44 (296) Q Consensus 29 ~~~i~l~PA~~~~GI~ 44 (296) .++|.++|||+++|++ T Consensus 13 s~~v~l~Pap~G~Gl~ 28 (72) T 1pkp_A 13 AGEIILKPASEGTGVI 28 (72) T ss_dssp TEEEEEEECCTTCCEE T ss_pred CEEEEEEECCCCCCEE T ss_conf 5879998536883248 No 10 >>2vqe_E 30S ribosomal protein S5; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (E:1-143) Probab=56.53 E-value=15 Score=17.53 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=25.8 Q ss_pred CCCCCCCCCHHHCCEEEEEEEEECCCCEEEEEEEECCCCCCEE Q ss_conf 4111000171107519999997037977899998378887189 Q gi|254781175|r 2 EMLQIGRLQHTIADSITITGIGIHSGKRANLKLCPAPEGVGIL 44 (296) Q Consensus 2 ~~~~~~~~Q~Ti~~~v~~~GiGLHsG~~~~i~l~PA~~~~GI~ 44 (296) +|+.+.+...||-.+++-.- ..+.+.+.|||.++|++ T Consensus 65 nl~~V~~~~~Ti~~~v~gk~------~s~~v~l~p~p~G~Gl~ 101 (143) T 2vqe_E 65 NMVEVPLQNGTIPHEIEVEF------GASKIVLKPAAPGTGVI 101 (143) T ss_dssp SEEECCCSTTSCSSCEEEEE------TTEEEEEEECCTTSCEE T ss_pred CEEEEECCCCCCCEEEEEEE------CCEEEEEEECCCCCCCC T ss_conf 87999555760408866652------42279998545566653 No 11 >>3i1m_E 30S ribosomal protein S5; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E 3i1q_E 3i1s_E 3i1z_E 3i21_E 2qal_E* 1p6g_E 1p87_E 2aw7_E 2avy_E 2i2u_E 2i2p_E* 2qan_E* 2qb9_E* 2qbb_E* 2qbd_E 2qbf_E 2qbh_E* ... (E:) Probab=54.68 E-value=13 Score=17.84 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=23.9 Q ss_pred CCCCCCCCCHHHCCEEEEEEEEECCCCEEEEEEEECCCCCCEE Q ss_conf 4111000171107519999997037977899998378887189 Q gi|254781175|r 2 EMLQIGRLQHTIADSITITGIGIHSGKRANLKLCPAPEGVGIL 44 (296) Q Consensus 2 ~~~~~~~~Q~Ti~~~v~~~GiGLHsG~~~~i~l~PA~~~~GI~ 44 (296) +|+.+.+-.+||-.+++-.- ..+.+.++|||.++|++ T Consensus 70 nl~~V~~~~~Ti~~~v~gk~------~~~~v~l~pap~G~Gl~ 106 (167) T 3i1m_E 70 NMINVALNNGTLQHPVKGVH------TGSRVFMQPASEGTGII 106 (167) T ss_dssp SEECCCCBTTBCSSCEEEEE------TTEEEEEECCCCSSSCB T ss_pred HHEEEECCCCCCCCCCCEEE------CCCEEEEEECCCCCCEE T ss_conf 41255133562324464355------36237997247986507 No 12 >>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} (A:1-118,A:210-442) Probab=53.15 E-value=16 Score=17.19 Aligned_cols=151 Identities=13% Similarity=0.159 Sum_probs=85.8 Q ss_pred EEEEHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEE-EECCC-EEEEECCEEEEEECC Q ss_conf 8864899899998720005999964887830058289999988544554447875147-70463-499817714654147 Q gi|254781175|r 79 QVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTLTAKRRYL-RIIKS-VRITSGESWAEFSPH 156 (296) Q Consensus 79 ~V~TVEHLLAAL~glgIDN~~Ieidg~EiPIlDGSA~~fv~~i~~aGi~eq~~~r~~~-~i~~~-v~v~~~~~~i~~~P~ 156 (296) .+.-+|.+.....-..||=+.| |||-|+.+|= +++++++|+.-....++.- -..=. -.+.+++.+..+.+. T Consensus 68 ~~~~~~~~~~~~~~~~~dl~~~---gpe~~l~~g~----~d~~~~~g~~~~gp~~~~aeG~E~Sve~~vdg~~~~~l~~~ 140 (351) T 3lp8_A 68 DINSTIEVIQVCKKEKIELVVI---GPETPLMNGL----SDALTEEGILVFGPSKAAAEGKEISFFTLVDGSNPVILGVA 140 (351) T ss_dssp CTTCHHHHHHHHHHTTCCEEEE---CSHHHHHTTH----HHHHHHTTCEEESCCHHHHCSEEEEEEEEEESSCEEEEEEE T ss_pred CCCCHHHHHHHHHHCCCCEEEE---CCCHHHHHHH----HHHHHHCCCCEECCCHHHHCCCEEEEEEEEECCEEEECCCH T ss_conf 7899999999999809999998---9708988767----99997389916468899987835889999739989967235 Q ss_pred CCCEEEEEEEE-CCC-CCCCCCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCCCCCCCCEEEECCCCEECCCCC Q ss_conf 66337899970-884-3130002345545778985146503222025788864200032133464564137733106774 Q gi|254781175|r 157 CSMRFEISIEF-KNS-IIGFQKWAGDLTQTVFRNEIYAARTFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGL 234 (296) Q Consensus 157 ~~l~i~~~idf-~~~-~Ig~Q~~~~~~~~~~f~~eIa~ARTF~~~~eie~L~~~Gl~~Ggsl~NaiVi~~~~~i~n~~~L 234 (296) +..+--+..|- |++ -.|.++......+. ..+++. .+. ...-...|++.|+--+|-+.--+.++++++.+..-.- T Consensus 141 qd~k~~~~~d~gp~tggmG~~~p~~~~p~~-l~~~~~-~~i--~~~~~~~l~alGl~~~G~l~~e~mlt~~GP~VIEiN~ 216 (351) T 3lp8_A 141 QDYKTIGDNNKGPNTGGMGSYSKPNIITQE-MEHIII-QKI--IYPTIKAMFNMNIQFRGLLFAGIIIKKNEPKLLEYNV 216 (351) T ss_dssp EECCEEEGGGEEEECSCSEEEECTTSSCHH-HHHHHH-HHT--HHHHHHHHHHTTCCCEEEEEEEEEEETTEEEEEEEES T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHHHHH-HHH--HHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEEE T ss_conf 423223589999889987776787534688-999999-988--8889999986699528996457999679825998740 Q ss_pred CCCCCC Q ss_conf 789972 Q gi|254781175|r 235 RYSGEE 240 (296) Q Consensus 235 R~~~dE 240 (296) ||-..| T Consensus 217 R~Gdpe 222 (351) T 3lp8_A 217 RFGDPE 222 (351) T ss_dssp SCCTTH T ss_pred CCCCCC T ss_conf 238974 No 13 >>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} (A:197-272) Probab=52.22 E-value=9.9 Score=18.56 Aligned_cols=17 Identities=35% Similarity=0.274 Sum_probs=14.4 Q ss_pred EEEHHHHHHHHHHHHHE Q ss_conf 86489989999872000 Q gi|254781175|r 80 VRTIEHLMAALYAYGID 96 (296) Q Consensus 80 V~TVEHLLAAL~glgID 96 (296) ++|.||||++|.-+++= T Consensus 2 lSt~ehlm~vLee~~~F 18 (76) T 1d2n_A 2 IATGEQLLEALELLGNF 18 (76) T ss_dssp EEEHHHHHHHHHHHTCS T ss_pred CCHHHHHHHHHHHCCCC T ss_conf 21199999999752699 No 14 >>3jyv_E 40S ribosomal protein S2; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_E (E:75-162) Probab=49.25 E-value=9.1 Score=18.79 Aligned_cols=17 Identities=41% Similarity=0.813 Sum_probs=14.8 Q ss_pred EEEEEEEECCCCCCEEE Q ss_conf 78999983788871899 Q gi|254781175|r 29 RANLKLCPAPEGVGILF 45 (296) Q Consensus 29 ~~~i~l~PA~~~~GI~F 45 (296) .+.|.++|||+++|++- T Consensus 16 s~~v~l~Pap~G~Giva 32 (88) T 3jyv_E 16 SVTVRLIPAPRGSGIVA 32 (88) T ss_dssp SEEEEEEECCTTCCBCC T ss_pred CEEEEEECCCCCCCCCC T ss_conf 36999944999847536 No 15 >>1j98_A Autoinducer-2 production protein LUXS; autoinducer synthesis, signaling protein; 1.20A {Bacillus subtilis} (A:) Probab=46.93 E-value=3.4 Score=21.46 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=39.5 Q ss_pred CCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHEE----EEEEEC--CC----C-CCC Q ss_conf 718999805688886263109986663220134763158864899899998720005----999964--88----7-830 Q gi|254781175|r 41 VGILFKCTQSGGITDSLSALWSNVLRTTLSTTIGSSSCQVRTIEHLMAALYAYGIDN----VIIEID--ST----E-VPI 109 (296) Q Consensus 41 ~GI~F~R~dl~~~~~~I~A~~~~V~~t~~~T~L~~~~~~V~TVEHLLAAL~glgIDN----~~Ieid--g~----E-iPI 109 (296) .|++-.|.|..+....|. .++-.....-.-.+.. ..++|+|||+|.+.=-..|. -.|.+. |- = +=+ T Consensus 17 P~vrvs~~~~~~~gd~it-~fDlR~~qPN~e~l~~--~~lHtlEHL~At~lRn~~~~~~~~~iI~~~PMGCrTGFYli~~ 93 (157) T 1j98_A 17 PYVRHCGVHKVGTDGVVN-KFDIRFCQPNKQAMKP--DTIHTLEHLLAFTIRSHAEKYDHFDIIDISPMGXQTGYYLVVS 93 (157) T ss_dssp SEEEEEEEEEETTTEEEE-EEEEECSCTTTCCCCH--HHHHHHHHHHHHHHHHHHTTCSSEEEEEEEECTTSSEEEEEEE T ss_pred CEEEEEEEEECCCCCEEE-EEEEEECCCCHHHCCC--CCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEEEE T ss_conf 879985358659999899-9665005888323787--3226999988999873823378864799579766620279887 Q ss_pred CCCCHHHHHHHHHHC Q ss_conf 058289999988544 Q gi|254781175|r 110 MDGSAKAFVEVIERI 124 (296) Q Consensus 110 lDGSA~~fv~~i~~a 124 (296) -|-++...+++++++ T Consensus 94 g~~~~~~i~~l~~~~ 108 (157) T 1j98_A 94 GETTSAEIVDLLEDT 108 (157) T ss_dssp ECCCHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHH T ss_conf 899989999999999 No 16 >>1j6x_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.38A {Helicobacter pylori} (A:) Probab=45.77 E-value=7.2 Score=19.45 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=26.8 Q ss_pred EEEEHHHHHHHHHHHHHEEEEEEE-CCC----CC-CCCCCCHHHHHHHHHHC Q ss_conf 886489989999872000599996-488----78-30058289999988544 Q gi|254781175|r 79 QVRTIEHLMAALYAYGIDNVIIEI-DST----EV-PIMDGSAKAFVEVIERI 124 (296) Q Consensus 79 ~V~TVEHLLAAL~glgIDN~~Iei-dg~----Ei-PIlDGSA~~fv~~i~~a 124 (296) .++|+|||||.+.=--.|+++=-- =|- =+ =+-|-++...+++++++ T Consensus 53 ~lHTlEHL~At~lRn~~d~iId~sPMGCrTGFYli~~g~~~~~~i~~l~~~~ 104 (160) T 1j6x_A 53 SLHSLEHLVAEIIRNHANYVVDWSPXGCQTGFYLTVLNHDNYTEILEVLEKT 104 (160) T ss_dssp HHHHHHHHHHHHHHHHCSCEEEEEECTTSSEEEEEEESCCCHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHH T ss_conf 1469999878888618898489888765601289885799989999999999 No 17 >>1j6w_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.10A {Haemophilus influenzae} (A:) Probab=45.54 E-value=4.3 Score=20.82 Aligned_cols=81 Identities=15% Similarity=0.145 Sum_probs=37.7 Q ss_pred CCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHEE---EEEEEC--CC----C-CCCC Q ss_conf 718999805688886263109986663220134763158864899899998720005---999964--88----7-8300 Q gi|254781175|r 41 VGILFKCTQSGGITDSLSALWSNVLRTTLSTTIGSSSCQVRTIEHLMAALYAYGIDN---VIIEID--ST----E-VPIM 110 (296) Q Consensus 41 ~GI~F~R~dl~~~~~~I~A~~~~V~~t~~~T~L~~~~~~V~TVEHLLAAL~glgIDN---~~Ieid--g~----E-iPIl 110 (296) .|++-.|.|..+....|. .++-.....-...+... .++|+|||+|.+.=-..+- =.|.+. |- = +=+- T Consensus 17 P~vrvsr~~~~~~Gd~It-~fDlR~~qPN~e~l~~~--~lHTlEHL~At~lRn~~~~~~~~iI~~sPMGCrTGFYli~~G 93 (175) T 1j6w_A 17 PAVRIAKTXLTPKGDNIT-VFDLRFCIPNKEILSPK--GIHTLEHLFAGFXRDHLNGDSIEIIDISPXGCRTGFYXSLIG 93 (175) T ss_dssp SEEEEEEEEECTTCCEEE-EEEEECSCTTTCCCCHH--HHHHHHHHHHHHHHHHHCBTTBEEEEEEECTTSSEEEEEEES T ss_pred CEEEEEEEEECCCCCEEE-EEEEEECCCCHHHCCCC--CHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEC T ss_conf 869998668559998799-98886328775557874--214999988888761656798759997687656334898717 Q ss_pred CCCHHHHHHHHHHC Q ss_conf 58289999988544 Q gi|254781175|r 111 DGSAKAFVEVIERI 124 (296) Q Consensus 111 DGSA~~fv~~i~~a 124 (296) |-++...+++++++ T Consensus 94 ~~~~~~i~~l~~~~ 107 (175) T 1j6w_A 94 TPNEQKVSEAWLAS 107 (175) T ss_dssp CCCHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHH T ss_conf 99989999999999 No 18 >>1vje_A Autoinducer-2 production protein LUXS; structural genomics, hydrolase; 1.64A {Deinococcus radiodurans} (A:) Probab=42.81 E-value=5.7 Score=20.09 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=25.3 Q ss_pred EEEEHHHHHHHHHHHHHEEEEEEE-CCC----CC-CCCCCCHHHHHHHHHHC Q ss_conf 886489989999872000599996-488----78-30058289999988544 Q gi|254781175|r 79 QVRTIEHLMAALYAYGIDNVIIEI-DST----EV-PIMDGSAKAFVEVIERI 124 (296) Q Consensus 79 ~V~TVEHLLAAL~glgIDN~~Iei-dg~----Ei-PIlDGSA~~fv~~i~~a 124 (296) .++|+|||+|.+.---.|.++=-- =|- =+ =+-|-|+...+++++++ T Consensus 55 ~lHTlEHl~At~lRn~~d~iId~sPMGCrTGFYli~~g~~~~~~i~~l~~~~ 106 (166) T 1vje_A 55 AIHTLEHLLAGYMRDHLEGVVDVSPMGXRTGMYMAVIGEPDEQGVMKAFEAA 106 (166) T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEECTTSSEEEEEEESSCCHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHH T ss_conf 3039999888888737788488878765502279886899999999999999 No 19 >>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A (A:1-102) Probab=42.66 E-value=9.4 Score=18.73 Aligned_cols=52 Identities=10% Similarity=0.029 Sum_probs=46.6 Q ss_pred CCCCEEEEEEHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 476315886489989999872000599996488783005828999998854455 Q gi|254781175|r 73 IGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGI 126 (296) Q Consensus 73 L~~~~~~V~TVEHLLAAL~glgIDN~~Ieidg~EiPIlDGSA~~fv~~i~~aGi 126 (296) -...+..|..|++=-.|=.++.+.+.+++||| .|+-+-+....+++|+++|- T Consensus 21 ~~~~~~~V~~v~~~spA~~~L~~GD~Il~Ing--~~v~~~~~~~~~~~l~~~g~ 72 (102) T 2qbw_A 21 PDDDGIFVTRVQPEGPASKLLQPGDKIIQANG--YSFINIEHGQAVSLLKTFQN 72 (102) T ss_dssp TTCCSEEEEEECTTSTTTTTCCTTCEEEEETT--EECTTCCHHHHHHHHHHCCS T ss_pred CCCCCEEEEEECCCCHHHHCCCCCCEEEEEEC--EEHHHHHHHHHHHHHHCCCC T ss_conf 79988899996889857845577999999935--41111589999999740898 No 20 >>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} (A:) Probab=29.95 E-value=35 Score=15.17 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=49.5 Q ss_pred CCCEEEEEEEECCCCCCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCCCEEEEEEHHHH-HHHHHHHHHEEEEEEECC Q ss_conf 7977899998378887189998056888862631099866632201347631588648998-999987200059999648 Q gi|254781175|r 26 SGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTLSTTIGSSSCQVRTIEHL-MAALYAYGIDNVIIEIDS 104 (296) Q Consensus 26 sG~~~~i~l~PA~~~~GI~F~R~dl~~~~~~I~A~~~~V~~t~~~T~L~~~~~~V~TVEHL-LAAL~glgIDN~~Ieidg 104 (296) +++..++++.+ ....|+.+.-. . -...+..|..|++- .|+..|+-..+.+++||| T Consensus 3 ~~~~~~i~~~~-~~~lG~~i~~~-~----------------------~~~~~~~V~~V~~gspA~~aGL~~GD~Il~INg 58 (103) T 1wf7_A 3 SGSSGSVSLVG-PAPWGFRLQGG-K----------------------DFNMPLTISSLKDGGKASQAHVRIGDVVLSIDG 58 (103) T ss_dssp CCCCEEEEEES-SSCCSCCEEEE-T----------------------TTTEEEEECCCCTTCHHHHTTCCTTCBEEEETT T ss_pred CCCEEEEEEEC-CCCCCEEEEEE-C----------------------CCCCCEEEEECCCCCHHHHCCCCCCCEEEEECC T ss_conf 88432899889-98665899800-4----------------------689777998258989689788887899998999 Q ss_pred CCCCCCCCCHHHHHHHHHHCCC Q ss_conf 8783005828999998854455 Q gi|254781175|r 105 TEVPIMDGSAKAFVEVIERIGI 126 (296) Q Consensus 105 ~EiPIlDGSA~~fv~~i~~aGi 126 (296) .|+-+-+...++.++++.|- T Consensus 59 --~~v~~~~~~~~~~~l~~~~~ 78 (103) T 1wf7_A 59 --ISAQGMTHLEAQNKIKACTG 78 (103) T ss_dssp --EECSSCCHHHHHHHHHHCSS T ss_pred --EECCCCCHHHHHHHHHCCCC T ss_conf --98389989999999886999 No 21 >>1o98_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; isomerase, alpha/beta-type structure; HET: 2PG; 1.4A {Bacillus stearothermophilus} (A:75-312) Probab=27.76 E-value=42 Score=14.66 Aligned_cols=68 Identities=21% Similarity=0.332 Sum_probs=44.7 Q ss_pred CCEEECCHHHHHHHH----HHCCCCCCEEEEEEHHHHHHHHHH---HHHEEEEEE--ECCCCCCCCCCCHHHHHHHHHHC Q ss_conf 862631099866632----201347631588648998999987---200059999--64887830058289999988544 Q gi|254781175|r 54 TDSLSALWSNVLRTT----LSTTIGSSSCQVRTIEHLMAALYA---YGIDNVIIE--IDSTEVPIMDGSAKAFVEVIERI 124 (296) Q Consensus 54 ~~~I~A~~~~V~~t~----~~T~L~~~~~~V~TVEHLLAAL~g---lgIDN~~Ie--idg~EiPIlDGSA~~fv~~i~~a 124 (296) ++.+...++++..+. +.--++.||+. +.++||.|.+.. .||.++.|- .||-.+| -.|+..|++.|++. T Consensus 20 n~~l~~~~~~~k~~~~~lHl~GL~SdGGVH-Sh~~Hl~al~~~a~~~gv~~V~iH~f~DGRDt~--P~Sa~~yi~~le~~ 96 (238) T 1o98_A 20 NETFLAAMNHVKQHGTSLHLFGLLSDGGVH-SHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVG--PQTAPQYIKELQEK 96 (238) T ss_dssp CHHHHHHHHHHHHHTCCEEEEEECSSCCSS-CCHHHHHHHHHHHHHTTCCCEEEEEEECSSSSC--TTCHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHCCCCEEEEEECCCCCCC-CCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC--CHHHHHHHHHHHHH T ss_conf 999999999998669824789842688655-543455688999997199405788841466678--32579999999986 No 22 >>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} (B:96-169) Probab=27.36 E-value=24 Score=16.18 Aligned_cols=35 Identities=23% Similarity=0.411 Sum_probs=21.7 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCC--CCCCEE Q ss_conf 200114899989899759964689999778808999999999809--667156 Q gi|254781175|r 240 EFVRHKTLDAIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFAD--KDSYEI 290 (296) Q Consensus 240 E~vRHKiLDlIGDL~L~G~pi~g~i~a~k~GH~ln~~l~~~l~~~--~~~~~~ 290 (296) |++|-||||+|++ +||-.+ -++.+.|=.+ .+||.+ T Consensus 3 d~ik~kildii~~---------------~pG~Dl-LqlTq~lN~~~~n~nWt~ 39 (74) T 1u5t_B 3 DVVKEKLVDLIGD---------------NPGSDL-LRLTQILSSNNSKSNWTL 39 (74) T ss_dssp HHHHHHHHHHHHH---------------SCSBCH-HHHHHHHHTSCTTCCCCH T ss_pred CHHHHHHHHHHHH---------------CCCCCH-HHHHHHHHHHHHHHCCCH T ss_conf 5589999999997---------------278778-875226999999949989 No 23 >>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotide, structural genomics, NPPSFA; 2.80A {Thermus thermophilus HB8} (A:1-114,A:184-417) Probab=25.08 E-value=47 Score=14.36 Aligned_cols=161 Identities=15% Similarity=0.165 Sum_probs=86.8 Q ss_pred EHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC-------------EE---EE-CCCEEE Q ss_conf 48998999987200059999648878300582899999885445544478751-------------47---70-463499 Q gi|254781175|r 82 TIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTLTAKRR-------------YL---RI-IKSVRI 144 (296) Q Consensus 82 TVEHLLAAL~glgIDN~~Ieidg~EiPIlDGSA~~fv~~i~~aGi~eq~~~r~-------------~~---~i-~~~v~v 144 (296) -+|.+.....-.+||=+.| |||-|+.+|= ++.++++|+.-....++ +. .| =..+++ T Consensus 49 ~~~~~~~~~~~~~i~~~~~---gpe~pl~~g~----~d~~~~~~~~~~gp~~~~a~le~sk~~~k~~~~~~~ieG~E~Sv 121 (348) T 2ip4_A 49 DVEALADWALAEGIDLTLV---GPEAPLVEGI----ADAFQARGLLLFGPTQKAAXIEGSKAFAKGLXERYGIEGEEATV 121 (348) T ss_dssp CHHHHHHHHHHHTCCEEEE---CSSHHHHTTH----HHHHHHHTCCEESCCHHHHHHHHCHHHHHHHHHHTCCCSCEEEE T ss_pred CHHHHHHHHHHHCCCEEEE---CCCHHHHHHH----HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE T ss_conf 9899999999839999998---9837888789----99998679975552466766431678999999981984622112 Q ss_pred ---EECCEEEEEECCCCCEEEEEEEECCCCCCCCCCC--CCCCHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCCCCCCCC Q ss_conf ---8177146541476633789997088431300023--45545778985146503222025788864200032133464 Q gi|254781175|r 145 ---TSGESWAEFSPHCSMRFEISIEFKNSIIGFQKWA--GDLTQTVFRNEIYAARTFGFLRDVERYRKAGCALGASLENS 219 (296) Q Consensus 145 ---~~~~~~i~~~P~~~l~i~~~idf~~~~Ig~Q~~~--~~~~~~~f~~eIa~ARTF~~~~eie~L~~~Gl~~Ggsl~Na 219 (296) .+++.+..+-+.+..+-.+..|..-...+.-.++ ..++++ ..+.+-. ....-++.|...|+.-+|-+.-- T Consensus 122 e~~vdg~~~~~l~~tqd~k~~~~~d~gp~tgemGa~~p~~~l~~~-~~e~i~e----i~~~~l~al~~~G~~~~gvl~~e 196 (348) T 2ip4_A 122 LALTDGETILPLLPSQDHKRLLDGDQGPXTGGXGAVAPYPXDEAT-LRRVEEE----ILGPLVRGLRAEGVVYRGVVYAG 196 (348) T ss_dssp EEEESSSCEEECCCBEECCEEETTTEEEECSCSEEEESCCCCHHH-HHHHHHH----THHHHHHHHHHTTCCCCEEEEEE T ss_pred EEEECCCCEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHH----HHHHHHHHHHHCCCCCEECCCCE T ss_conf 688615755873232100010369987310255442454445677-6899999----99999999987499321002240 Q ss_pred EEEECCCCEECCCCCCCCCCCCCH-------HHHHHHHHHHHH Q ss_conf 564137733106774789972001-------148999898997 Q gi|254781175|r 220 VVISEDDQVMNHGGLRYSGEEFVR-------HKTLDAIGDIAL 255 (296) Q Consensus 220 iVi~~~~~i~n~~~LR~~~dE~vR-------HKiLDlIGDL~L 255 (296) +.++++++.+..-.-|+- |-... --+++++=++++ T Consensus 197 ~mlt~~Gp~VIEiN~R~G-d~~~~~i~~~lg~Dl~e~~~~~a~ 238 (348) T 2ip4_A 197 LXLTREGPKVLEFNARFG-DPEAQALLPLLENDLVELALRVAE 238 (348) T ss_dssp EEECSSCEEEEEEESSCC-TTHHHHHTTTBCSCHHHHHHHHHH T ss_pred EEEEECCCEEEEEEEEEE-CCCCEEEEEECCCCCCCCCCHHCC T ss_conf 389725866876666760-464126643125532100100026 No 24 >>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genomics; HET: MSE ACO; 1.90A {Bacillus anthracis} PDB: 3e4f_A* (A:15-268) Probab=23.55 E-value=50 Score=14.18 Aligned_cols=44 Identities=25% Similarity=0.429 Sum_probs=38.7 Q ss_pred EEHHHHHHHHHHHHH---EEEEEEECCCCCCCCCCCHHHHHHHHHHC Q ss_conf 648998999987200---05999964887830058289999988544 Q gi|254781175|r 81 RTIEHLMAALYAYGI---DNVIIEIDSTEVPIMDGSAKAFVEVIERI 124 (296) Q Consensus 81 ~TVEHLLAAL~glgI---DN~~Ieidg~EiPIlDGSA~~fv~~i~~a 124 (296) +|.|-|..+|..+|| |-++|.-+=.-+=-..|++..+++++.++ T Consensus 1 ~Tk~~l~~~L~~LGi~~gd~l~VHsSl~~lG~v~gg~~~vi~AL~~~ 47 (254) T 3ijw_A 1 NTIKTITNDLRKLGLKKGXTVIVHSSLSSIGWISGGAVAVVEALXEV 47 (254) T ss_dssp BCHHHHHHHHHHHTCCTTCEEEEEECTGGGCCBTTHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCHHHHCCCCCCHHHHHHHHHHH T ss_conf 54999999999819999499999757688388789889999999998 No 25 >>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} (A:13-273) Probab=23.48 E-value=50 Score=14.17 Aligned_cols=44 Identities=20% Similarity=0.374 Sum_probs=38.5 Q ss_pred EEHHHHHHHHHHHHH---EEEEEEECCCCCCCCCCCHHHHHHHHHHC Q ss_conf 648998999987200---05999964887830058289999988544 Q gi|254781175|r 81 RTIEHLMAALYAYGI---DNVIIEIDSTEVPIMDGSAKAFVEVIERI 124 (296) Q Consensus 81 ~TVEHLLAAL~glgI---DN~~Ieidg~EiPIlDGSA~~fv~~i~~a 124 (296) +|.|-|.++|.-+|| |-++|.-+=.-+=...|++..+++++.++ T Consensus 1 ~Tk~~l~~~L~~LGI~~gd~llVHsSl~~lG~v~gga~~vi~aL~~~ 47 (261) T 2nyg_A 1 RTKQSITEDLKALGLKKGMTVLVHSSLSSIGWVNGGAVAVIQALIDV 47 (261) T ss_dssp BCHHHHHHHHHHHTCCTTCEEEEEECSGGGCCBTTHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCHHHHCCCCCCHHHHHHHHHHH T ss_conf 68999999999829899599999767788388788799999999998 No 26 >>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli} (A:1-73) Probab=23.05 E-value=51 Score=14.12 Aligned_cols=67 Identities=15% Similarity=0.239 Sum_probs=43.7 Q ss_pred CCCCCCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCCCE-EEEEEHHHHHHHHHHHHH-EEEEEEECCCCCCC Q ss_conf 78887189998056888862631099866632201347631-588648998999987200-05999964887830 Q gi|254781175|r 37 APEGVGILFKCTQSGGITDSLSALWSNVLRTTLSTTIGSSS-CQVRTIEHLMAALYAYGI-DNVIIEIDSTEVPI 109 (296) Q Consensus 37 A~~~~GI~F~R~dl~~~~~~I~A~~~~V~~t~~~T~L~~~~-~~V~TVEHLLAAL~glgI-DN~~Ieidg~EiPI 109 (296) |.++....|.++...|+.. ++.. +....+. +..|. .+-..++....+|+.+|. +++.+..++..+.| T Consensus 1 A~~g~~~~i~~I~i~G~~~-~~~~---~i~~~l~--~k~G~~~s~~~i~~~~~~L~~~g~F~~V~v~~~~~~l~i 69 (73) T 3efc_A 1 GAMAEGFVVKDIHFEGLQR-VAVG---AALLSMP--VRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLV 69 (73) T ss_dssp -----CCCEEEEECSCCSS-SCHH---HHHHTCS--CCTTSCCCTHHHHHHHHHHHHHCCEEEEEEECCSSEEEE T ss_pred CCCCCCCEEEEEEEECCCC-CCHH---HHHHHCC--CCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCEEEE T ss_conf 9877771897999999835-6999---9997469--999992798999999999996799568999963999999 No 27 >>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:) Probab=22.29 E-value=53 Score=14.02 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=44.7 Q ss_pred CCCCCEEEEEEHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 3476315886489989999872000599996488783005828999998854455 Q gi|254781175|r 72 TIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGI 126 (296) Q Consensus 72 ~L~~~~~~V~TVEHLLAAL~glgIDN~~Ieidg~EiPIlDGSA~~fv~~i~~aGi 126 (296) .....+..|.-|+.=-+|=.++...+.+++||| .|+-+=+-...+.+|+++|- T Consensus 42 ~~~~~~~~V~~V~~gspA~~gl~~GD~Il~InG--~~v~~~~~~~~~~~l~~~g~ 94 (117) T 2csj_A 42 ENGETSIVISDVLPGGPADGLLQENDRVVMVNG--TPMEDVLHSFAVQQLRKSGK 94 (117) T ss_dssp SSCCCBCEEEEECTTSSHHHHBCTTCEEEEESS--CBCBTCCHHHHHHHHHHSCS T ss_pred CCCCCCEEEEEECCCCCHHCCCCCCCEEEEECC--EECCCCCHHHHHHHHHCCCC T ss_conf 568888899897899800038999989989899--74589989999999982899 No 28 >>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} (A:454-571,A:651-665) Probab=22.19 E-value=53 Score=14.01 Aligned_cols=100 Identities=12% Similarity=0.072 Sum_probs=57.9 Q ss_pred CCHHHCCEEEEEEE----EECCCCEEEEEEEECCCCCCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCCCEEEEEEHH Q ss_conf 17110751999999----70379778999983788871899980568888626310998666322013476315886489 Q gi|254781175|r 9 LQHTIADSITITGI----GIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTLSTTIGSSSCQVRTIE 84 (296) Q Consensus 9 ~Q~Ti~~~v~~~Gi----GLHsG~~~~i~l~PA~~~~GI~F~R~dl~~~~~~I~A~~~~V~~t~~~T~L~~~~~~V~TVE 84 (296) |+-||.++++..+. +=-++....|.+.+. ++++..|+-. ..+ .+ ++..+...+.......+..|- T Consensus 3 YRETi~~~~~~~~~~~k~~g~~~~~a~V~l~ie-p~~~~~~~~~-~~~-~~-~p~e~~~ai~~G~~~a~~~Gp------- 71 (133) T 2dy1_A 3 YRETIKKVAEGQGKYKKQTGGHGQYGDVWLRLE-PASEYGFEWR-ITG-GV-IPSKYQEAIEEGIKEAAKKGV------- 71 (133) T ss_dssp CEEEESSCEEEEEEEEEEETTEEEEEEEEEEEE-ECSSCEEEEC-CCT-TS-SCGGGHHHHHHHHHHHHTSCT------- T ss_pred EEECCCCCCCCEEEEEECCCCCCEEEEEEEEEC-CCCCCCCCCC-CCC-CE-EHHHHHHHHHHHHHHHHHCCC------- T ss_conf 155145553311578741788871536888977-7745675400-358-75-134435777677899985674------- Q ss_pred HHHHHHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHC Q ss_conf 9899998720005999964887830058289999988544 Q gi|254781175|r 85 HLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERI 124 (296) Q Consensus 85 HLLAAL~glgIDN~~Ieidg~EiPIlDGSA~~fv~~i~~a 124 (296) |+|.-|-|+.|.+-+.++=-.|-|...|.-+-.+| T Consensus 72 -----L~g~pv~dvkv~L~d~~~h~~~s~~~~f~~Aa~~a 106 (133) T 2dy1_A 72 -----LAGFPVMGFKAIVYNGSYHEVDSSDLAFQIAASLA 106 (133) T ss_dssp -----TTSCCBCSEEEEEEEEECCTTTBCHHHHHHHHHHH T ss_pred -----CCCCCCCCEEEEEEECCEECCCCCCHHHHHHHHHH T ss_conf -----12555244599998577506888706899999999 No 29 >>2vvf_A Major capsid protein P2; double jelly-roll viral capsid, viral protein; 2.5A {Pseudoalteromonas phage PM2} PDB: 2w0c_A (A:1-139) Probab=22.17 E-value=8.8 Score=18.90 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=18.9 Q ss_pred EEHHHHHHHHHHHHHEEEEEEEC---CCCCCCCCCCH Q ss_conf 64899899998720005999964---88783005828 Q gi|254781175|r 81 RTIEHLMAALYAYGIDNVIIEID---STEVPIMDGSA 114 (296) Q Consensus 81 ~TVEHLLAAL~glgIDN~~Ieid---g~EiPIlDGSA 114 (296) ..+|.-+.+|-..++||+.||++ |..-|.|++.| T Consensus 97 ~~~e~r~~~L~T~~~~~~~iEv~i~aga~AP~l~a~A 133 (139) T 2vvf_A 97 DLVQQRMFALGTVGLTTCEIKFDIDEAAAGPKLSAIA 133 (139) T ss_dssp HHHHHHTTSEECTTCSCEEEEEEECTTCSSCEEEEEE T ss_pred CEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCEEEE T ss_conf 0268620004786258999999615576778617999 No 30 >>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633} (A:) Probab=21.61 E-value=55 Score=13.94 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=35.3 Q ss_pred HHHHCCCCCCEEEEEEHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 32201347631588648998999987200059999648878300582899999885445 Q gi|254781175|r 67 TTLSTTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIG 125 (296) Q Consensus 67 t~~~T~L~~~~~~V~TVEHLLAAL~glgIDN~~Ieidg~EiPIlDGSA~~fv~~i~~aG 125 (296) ..+...|...|..|.+++..-.|+..+.-.+.-+-+-...+|-+|| ..+++.|++.. T Consensus 18 ~~l~~~l~~~G~~v~~~~~~~~al~~l~~~~~dlillD~~lp~~~g--~~l~~~ir~~~ 74 (137) T 3cfy_A 18 ILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSG--EDVLDWINQND 74 (137) T ss_dssp HHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSBCSSSBH--HHHHHHHHHTT T ss_pred HHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCC--HHHHHHHHHHC T ss_conf 9999999977998999700899998875467628985034789972--89999999758 No 31 >>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transport; 3.6A {Saccharomyces cerevisiae} (D:491-566) Probab=20.78 E-value=26 Score=15.94 Aligned_cols=35 Identities=23% Similarity=0.411 Sum_probs=19.6 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCC--CCCCEE Q ss_conf 200114899989899759964689999778808999999999809--667156 Q gi|254781175|r 240 EFVRHKTLDAIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFAD--KDSYEI 290 (296) Q Consensus 240 E~vRHKiLDlIGDL~L~G~pi~g~i~a~k~GH~ln~~l~~~l~~~--~~~~~~ 290 (296) |++|-||||+|++ +||-.+ -++.+.|=.+ .+||.+ T Consensus 3 d~ik~kildii~~---------------~pG~Dl-LqlTq~LN~~~~n~nWt~ 39 (76) T 1w7p_D 3 DVVKEKLVDLIGD---------------NPGSDL-LRLTQILSSNNSKSNWTL 39 (76) T ss_dssp HHHHHHHHHHHTT---------------STTCCH-HHHHHHHSCSSSCCCBCH T ss_pred HHHHHHHHHHHHC---------------CCCCCH-HHHHHHHHHHHHHCCCCH T ss_conf 8999999999843---------------788899-998778887887639769 Done!