HHSEARCH alignment of GI: 254781175 and SCOP domain: d1p42a1

Alignment
>d1p42a1 d.14.1.7 (A:2-127) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus [TaxId: 63363]}
Probab=100.00  E-value=0  Score=329.92  Aligned_cols=118  Identities=32%  Similarity=0.528  Sum_probs=113.5

Q ss_pred             CCHHHCCEEEEEEEEECCCCEEEEEEEECCCCCCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCCCEEEEEEHHHHHH
Q ss_conf             17110751999999703797789999837888718999805688886263109986663220134763158864899899
Q gi|254781175|r    9 LQHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTLSTTIGSSSCQVRTIEHLMA   88 (296)
Q Consensus         9 ~Q~Ti~~~v~~~GiGLHsG~~~~i~l~PA~~~~GI~F~R~dl~~~~~~I~A~~~~V~~t~~~T~L~~~~~~V~TVEHLLA   88 (296)
                      |||||+++++++|+|||||++++|+++||++|+||+|+|.|+     .|+|+++||.+|.+||+|++++.+|+|||||||
T Consensus         2 ~Q~Ti~~~v~~~GiGLHsG~~~~v~l~PA~~~~GI~F~r~d~-----~I~a~~~~v~~t~~~T~l~~~~~~V~TvEHLla   76 (120)
T d1p42a1           2 LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGV-----YIPARHEFVVHTNHSTDLGFKGQRIKTVEHILS   76 (120)
T ss_dssp             EEEEESSCEEEEEECTTTCCEEEEEEEECCTTCCEEEEETTE-----EEESSGGGEEECSSSCEEEETTEEEBCCHHHHH
T ss_pred             CCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEECCC-----CCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHH
T ss_conf             874668767999998037958899999379994799984775-----676455442203344442158449997699788


Q ss_pred             HHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             9987200059999648878300582899999885445544478
Q gi|254781175|r   89 ALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTLTA  131 (296)
Q Consensus        89 AL~glgIDN~~Ieidg~EiPIlDGSA~~fv~~i~~aGi~eq~~  131 (296)
                      ||+||||||++||+||+|+|||||||++|+++|+++|+++|.+
T Consensus        77 Al~glgIDN~~Ieldg~EvPIlDGSa~~fv~~i~~agi~q~~~  119 (120)
T d1p42a1          77 VLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKNILNQNRE  119 (120)
T ss_dssp             HHHHTTCCSEEEEEESSBCCCTTSSSHHHHHHHHTTEEEEEEE
T ss_pred             HHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCHHHCCC
T ss_conf             8984472349999589938736786699999999857544156


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
domain: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
species: Aquifex aeolicus [TaxId: 63363]