RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781175|ref|YP_003065588.1| UDP-3-O-[3-hydroxymyristoyl]
N-acetylglucosamine deacetylase [Candidatus Liberibacter asiaticus
str. psy62]
(296 letters)
>gnl|CDD|183882 PRK13186, lpxC, UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine
deacetylase; Reviewed.
Length = 295
Score = 390 bits (1004), Expect = e-109
Identities = 131/282 (46%), Positives = 183/282 (64%), Gaps = 3/282 (1%)
Query: 10 QHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTL 69
Q T+ +T TG+G+HSGK+ L L PAP GI+F+ T + + A NV T L
Sbjct: 4 QRTLKKPVTATGVGLHSGKKVTLTLRPAPANTGIVFRRTDLPPPVE-IPARAENVGDTRL 62
Query: 70 STTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTL 129
TT+G+ +V T+EHLMAAL GIDN +IE+D EVPIMDGSA FV +I+ GI
Sbjct: 63 CTTLGNGGVRVSTVEHLMAALAGLGIDNALIEVDGPEVPIMDGSAAPFVFLIQSAGIVEQ 122
Query: 130 TAKRRYLRIIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIGFQKWAGDLTQTVFRNE 189
A ++++RI K VR+ G+ WAE P+ R + +I+F + IG Q ++ D + F E
Sbjct: 123 NAPKKFIRIKKPVRVEDGDKWAELLPYDGFRLDFTIDFDHPAIGRQSYSLDFSPESFVRE 182
Query: 190 IYAARTFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGLRYSGEEFVRHKTLDA 249
I ARTFGF++DVE R AG ALG SL+N++V+ +DD+V+N GLR+ +EFVRHK LDA
Sbjct: 183 IARARTFGFMKDVEYLRSAGLALGGSLDNAIVL-DDDRVLNPEGLRFE-DEFVRHKILDA 240
Query: 250 IGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDSYEIV 291
IGD+ L G+P+IG + + + H +N+ L L AD D++EIV
Sbjct: 241 IGDLYLLGHPIIGHFTAYKSGHALNNKLLRALLADPDAWEIV 282
>gnl|CDD|129425 TIGR00325, lpxC, UDP-3-0-acyl N-acetylglucosamine deacetylase.
UDP-3-O-(R-3-hydroxymyristoyl)-GlcNAc deacetylase from
E. coli, LpxC, was previously designated EnvA. This
enzyme is involved in lipid-A precursor biosynthesis. It
is essential for cell viability.
Length = 297
Score = 263 bits (674), Expect = 4e-71
Identities = 110/282 (39%), Positives = 179/282 (63%), Gaps = 3/282 (1%)
Query: 10 QHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTL 69
Q TI S+T+TG+G+HSG + L L PA G++F T A ++V T L
Sbjct: 3 QRTIKASVTVTGVGLHSGVKVTLTLRPAAANTGVVFYRTDLNPKVI-FPADPTSVRDTML 61
Query: 70 STTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTL 129
T +G+ ++ T+EHL+AAL A GIDN+ IE+++ E+PIMDGSA F+ ++ GI+ L
Sbjct: 62 CTELGNEGARISTVEHLLAALAALGIDNLRIEVNAPEIPIMDGSALPFLYLLLDAGIREL 121
Query: 130 TAKRRYLRIIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIGFQKWAGDLTQTVFRNE 189
A ++++RI + VR+ G+ + EF P+ R + +I+F + IG Q + + + F +
Sbjct: 122 NAAKKFIRIKQPVRVEDGDKFVEFKPYNGFRLDFTIDFNHPAIGKQWYTMNFSAEAFATQ 181
Query: 190 IYAARTFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGLRYSGEEFVRHKTLDA 249
I ARTFGF+ D+E R AG G SL+N++V+ +D +++N GLR+ +EFVRHK LDA
Sbjct: 182 IARARTFGFMDDIEYLRSAGLIKGGSLDNAIVL-DDYRILNEDGLRFE-DEFVRHKMLDA 239
Query: 250 IGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDSYEIV 291
IGD+++ G +IG + + + SH++N+ L + A ++++E+V
Sbjct: 240 IGDLSMLGKNIIGHFTAYKSSHKLNNKLLQAILATQEAWEVV 281
>gnl|CDD|183883 PRK13188, PRK13188, bifunctional UDP-3-O-[3-hydroxymyristoyl]
N-acetylglucosamine
deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein]
dehydratase; Reviewed.
Length = 464
Score = 227 bits (580), Expect = 3e-60
Identities = 104/291 (35%), Positives = 151/291 (51%), Gaps = 30/291 (10%)
Query: 10 QHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTL 69
Q TI +++ G+G+H+GK + PAPE G FK T G + A NV+ T
Sbjct: 5 QRTIKKEVSLQGVGLHTGKEVTITFKPAPENHGYKFKRTDLEG-QPIIDADVDNVVDTER 63
Query: 70 STTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTL 129
TT+ + +V T+EH++AALY GIDN +IE+D E PIMDGS+K FVE IE GI
Sbjct: 64 GTTLEKNGVKVHTVEHVLAALYGLGIDNCLIELDGPEPPIMDGSSKPFVEAIEEAGIVEQ 123
Query: 130 TAKRRYLRIIKSVRITSGESWAEFSPHCSMRFEIS--IEFKNSIIGFQ-KWAGDLTQTVF 186
A R Y I +++ E+ +E F I+ ++F + ++G Q DL++ F
Sbjct: 124 DAPRNYYVIKETIEYHDEETGSEIIALPLDDFRITVMVDFDSKVLGSQHATLFDLSE--F 181
Query: 187 RNEIYAARTFGFLRDVERYRKAGCALGASLENSVVISE---------------------- 224
+ EI ARTF FL +VE + G G L+N++VI +
Sbjct: 182 KKEIAPARTFVFLHEVEALLEQGLIKGGDLDNAIVIVDKEMSQEELDKLAKKFGKDHISV 241
Query: 225 -DDQVMNHGGLRYSGEEFVRHKTLDAIGDIALAGYPVIGCYRSCRGSHEIN 274
++ ++N+ LR+ E RHK LD IGD+AL G P+ G + R H IN
Sbjct: 242 KENGILNNRPLRFP-NEPARHKLLDVIGDLALIGKPIKGRIIAARPGHAIN 291
>gnl|CDD|171888 PRK13187, PRK13187, UDP-3-O-[3-hydroxymyristoyl]
N-acetylglucosamine deacetylase; Reviewed.
Length = 304
Score = 182 bits (463), Expect = 1e-46
Identities = 100/305 (32%), Positives = 160/305 (52%), Gaps = 32/305 (10%)
Query: 8 RLQHTIADSITITGIGIHSGKRANLKLCPAPEG---VGILFKCTQSGGITDSLSALWSNV 64
Q T+A +TI G G+H+G+R +++ PA GI+F+ + G +L +
Sbjct: 9 TSQGTLARPLTIDGHGLHTGRRVGVRILPARPEDGVTGIVFRRVEQGRTLATLPVDPALR 68
Query: 65 LRTTLSTTI-GSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIER 123
L T + + VRT+EHL+A+L A ID+ I+E+D+ EVPI+DGSA +V+ I
Sbjct: 69 RAQPLCTMLRNADGVGVRTVEHLLASLLACEIDHAIVELDAEEVPILDGSATPWVDAIRA 128
Query: 124 IGIKTLTAKRRYLRIIKSVRITSGESWA--EFSPHCSMRFEISIEFKNSIIGF--QKWAG 179
G L A +R++R++++V +T GE E + R+E+S+ +N + GF W G
Sbjct: 129 CGRVALDAPKRFIRVLRTVVVTDGEGEQRREMRIEPAPRYELSV--RNDLRGFGEMHWDG 186
Query: 180 DLTQTVFRNEIYAARTF------------GFLRDVERYRKAGCALGASLENSVVISEDDQ 227
LT F EI +R++ G+LR V R A + AS+ V+
Sbjct: 187 ALTPAAFATEIAPSRSYGRVKWAVPAILAGYLRGVPILRGARPSCTASIVGKRVL----- 241
Query: 228 VMNHGGLRYSGEEFVRHKTLDAIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDS 287
GG+R EFVRH+ LD +GD+ALAG P++ + R SHE+N + L A+ +
Sbjct: 242 ----GGMRLPD-EFVRHRVLDLVGDLALAGAPLLARVSALRPSHEMNFRLVDALLAEPGA 296
Query: 288 YEIVD 292
++ +
Sbjct: 297 WQWAE 301
>gnl|CDD|179703 PRK04000, PRK04000, translation initiation factor IF-2 subunit
gamma; Validated.
Length = 411
Score = 29.4 bits (67), Expect = 1.0
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 79 QVRTIEHLMAALYAYGIDNVII 100
Q +T EHLM AL GI N++I
Sbjct: 124 QPQTKEHLM-ALDIIGIKNIVI 144
>gnl|CDD|180801 PRK07033, PRK07033, hypothetical protein; Provisional.
Length = 427
Score = 29.2 bits (66), Expect = 1.4
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 130 TAKRRYLRIIKSVRITSGESWAEFSPH 156
++R ++I+SVR GE SPH
Sbjct: 190 ALRQRLAQMIRSVR---GEYAPALSPH 213
>gnl|CDD|163393 TIGR03680, eif2g_arch, translation initiation factor 2 subunit
gamma. eIF-2 functions in the early steps of protein
synthesis by forming a ternary complex with GTP and
initiator tRNA.
Length = 406
Score = 28.1 bits (63), Expect = 2.6
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 79 QVRTIEHLMAALYAYGIDNVII 100
Q +T EHLM AL GI N++I
Sbjct: 119 QPQTKEHLM-ALEIIGIKNIVI 139
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase.
Length = 359
Score = 27.9 bits (62), Expect = 2.9
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 170 SIIGFQKWAGDLTQTVFRNEIYAARTFGFLRDVERYRKAG--------CALGASLENSVV 221
S IG + AGD T + ++ + GF ++ YR A CA G + EN+VV
Sbjct: 112 SFIGNESRAGD-TVISWNDKASDLDSNGF--ELGTYRTASVTIESDYFCATGITFENTVV 168
Query: 222 ISEDDQVMNHGGLRYSGEEFVRHK 245
Q M LR SG++ +K
Sbjct: 169 AEPGGQGMQAVALRISGDKAFFYK 192
>gnl|CDD|182031 PRK09694, PRK09694, helicase Cas3; Provisional.
Length = 878
Score = 27.5 bits (61), Expect = 4.0
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 58 SALW---SNVLRTTLSTTIGSSSCQVRTIEHLMAALYAYG 94
+ W S VLR+ S S QVR AL+ G
Sbjct: 38 ADCWWDQSPVLRSQFSANEMLSKQQVRAWLLFFVALHDIG 77
>gnl|CDD|161815 TIGR00318, cyaB, adenylyl cyclase CyaB, putative. The protein CyaB
from Aeromonas hydrophila is a second adenylyl cyclase
from that species, as demonstrated by complementation in
E. coli and by assay of the enzymatic properties of
purified recombinant protein. It has no detectable
homology to any other protein of known function, and has
several unusual properties, including an optimal
temperature of 65 degrees and an optimal pH of 9.5. A
cluster of uncharaterized archaeal homologs may be
orthologous and serve (under certain circumstances) to
produce the regulatory metabolite cyclic AMP (cAMP).
Length = 174
Score = 26.7 bits (59), Expect = 6.7
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 14/61 (22%)
Query: 93 YGIDNVIIEIDST---------EVPIMDGSAKAFV-----EVIERIGIKTLTAKRRYLRI 138
Y + + + ID E I + + K E+I ++GIK +R YL +
Sbjct: 112 YQTNELNVSIDDVEGLGFFLEIEKIINNINDKDLALEEIFEIINQLGIKDNIERRSYLEL 171
Query: 139 I 139
+
Sbjct: 172 L 172
>gnl|CDD|132282 TIGR03238, dnd_assoc_3, dnd system-associated protein 3. cereus
E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas
haloplanktis TAC12, and Escherichia coli B7A.
Length = 504
Score = 26.8 bits (59), Expect = 7.3
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 95 IDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTLTAKRRYLRIIKSVRITSGESWAEFS 154
ID II++ + + D F V+ R+G T R +LR +RIT +
Sbjct: 268 IDQFIIDLS---LNLPDQEFNEFKTVLNRLGCVTSNKGRSWLRPFYVLRIT------YLT 318
Query: 155 PHCSMRFEISIEFKNSII 172
++F S +F++
Sbjct: 319 NEYHVKF--SQDFEDQTY 334
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.137 0.404
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,806,725
Number of extensions: 306354
Number of successful extensions: 548
Number of sequences better than 10.0: 1
Number of HSP's gapped: 536
Number of HSP's successfully gapped: 21
Length of query: 296
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 203
Effective length of database: 3,984,929
Effective search space: 808940587
Effective search space used: 808940587
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)