RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781175|ref|YP_003065588.1| UDP-3-O-[3-hydroxymyristoyl]
N-acetylglucosamine deacetylase [Candidatus Liberibacter asiaticus
str. psy62]
(296 letters)
>2ves_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine
deacetylase; LPXC, hydrolase, BB-78485, antibiotics,
lipid synthesis, metalloprotease; HET: GVR; 1.90A
{Pseudomonas aeruginosa} (A:1-125,A:182-189,A:229-248)
Length = 153
Score = 158 bits (401), Expect = 8e-40
Identities = 51/123 (41%), Positives = 76/123 (61%), Gaps = 1/123 (0%)
Query: 10 QHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTL 69
Q T+ + I TG+G+HSG++ L L PAP GI+F T + + + A NV TT+
Sbjct: 4 QRTLKNIIRATGVGLHSGEKVYLTLKPAPVDTGIVFSRTDLDPVVE-IPARAENVGETTM 62
Query: 70 STTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTL 129
STT+ +V T+EHL++A+ GIDN +E+ ++EVPIMDGSA FV +I+ G++
Sbjct: 63 STTLVKGDVKVDTVEHLLSAMAGLGIDNAYVELSASEVPIMDGSAGPFVFLIQSAGLQEQ 122
Query: 130 TAK 132
A
Sbjct: 123 EAA 125
Score = 27.0 bits (60), Expect = 2.8
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 239 EEFVRHKTLDAIGDIAL 255
+EFV+HK LDAIGD+ L
Sbjct: 137 DEFVKHKILDAIGDLYL 153
>1p42_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine
deacetylase; alpha+beta fold, hydrophobic tunnel,
hydrolase; HET: MYR; 2.00A {Aquifex aeolicus} (A:1-119)
Length = 119
Score = 148 bits (376), Expect = 7e-37
Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 9 LQHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTT 68
L+ T+ + ++ G+GIH+G+ + L + P EG GI F + A V+ T
Sbjct: 2 LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGV-----YIPARHEFVVHTN 56
Query: 69 LSTTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIK 127
ST +G +++T+EH+++ L+ I NV IE+ E+PI+DGS F E I + +
Sbjct: 57 HSTDLGFKGQRIKTVEHILSVLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKNILN 115
>1p42_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine
deacetylase; alpha+beta fold, hydrophobic tunnel,
hydrolase; HET: MYR; 2.00A {Aquifex aeolicus}
(A:120-177,A:217-270)
Length = 112
Score = 76.1 bits (187), Expect = 5e-15
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 235 RYSGEEFVRHKTLDAIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDSY 288
RY E VRHK D IGD+ L G PV G + S RG H +N + L +
Sbjct: 59 RYE-NEPVRHKVFDLIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQKLT 111
>1p42_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine
deacetylase; alpha+beta fold, hydrophobic tunnel,
hydrolase; HET: MYR; 2.00A {Aquifex aeolicus}
(A:178-216)
Length = 39
Score = 61.5 bits (150), Expect = 1e-10
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 195 TFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGL 234
TF F ++E +K G G SL+N++V+ D+V N GL
Sbjct: 1 TFAFDWEIEHIKKVGLGKGGSLKNTLVLG-KDKVYNPEGL 39
>2ves_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine
deacetylase; LPXC, hydrolase, BB-78485, antibiotics,
lipid synthesis, metalloprotease; HET: GVR; 1.90A
{Pseudomonas aeruginosa} (A:190-228)
Length = 39
Score = 61.5 bits (150), Expect = 1e-10
Identities = 19/40 (47%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 195 TFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGL 234
TFGF+RD+E R ALG S+EN++V+ +++V+N GL
Sbjct: 1 TFGFMRDIEYLRSQNLALGGSVENAIVVD-ENRVLNEDGL 39
>2ves_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine
deacetylase; LPXC, hydrolase, BB-78485, antibiotics,
lipid synthesis, metalloprotease; HET: GVR; 1.90A
{Pseudomonas aeruginosa} (A:126-181,A:249-299)
Length = 107
Score = 59.3 bits (144), Expect = 5e-10
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 133 RRYLRIIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIG--FQKWAGDLTQTVF 186
++++RI + V + G+ A F P + I+F + + Q+ + D + T F
Sbjct: 1 KKFIRIKREVSVEEGDKRAVFVPFDGFKVSFEIDFDHPVFRGRTQQASVDFSSTSF 56
Score = 56.6 bits (137), Expect = 4e-09
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 256 AGYPVIGCYRSCRGSHEINHMALCTLFADKDSYEIVD 292
G +IG +R + H +N+ L TL ADKD++E+V
Sbjct: 57 LGNSLIGEFRGFKSGHALNNQLLRTLIADKDAWEVVT 93
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:234-256,A:435-732)
Length = 321
Score = 26.9 bits (58), Expect = 3.5
Identities = 8/48 (16%), Positives = 18/48 (37%)
Query: 84 EHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTLTA 131
+ +A + I T + + E IE++G++T +
Sbjct: 241 NRWHSESWANQLTVCGAIIGWTRGTGLMSANNIIAEGIEKMGVRTFSQ 288
>3h0g_C DNA-directed RNA polymerase II subunit RPB3; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe} (C:39-170)
Length = 132
Score = 26.4 bits (58), Expect = 5.1
Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 95 IDNVIIEIDSTEVPIMDGSAKAFVEVI-ERIGIKTLTAKRRYLRIIKSVRITSGESWAEF 153
ID V I ++++ + D E + R+G+ L + + T ++
Sbjct: 7 IDLVEINVNTS--VMPD-------EFLAHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQY 57
Query: 154 SPHCSMRFEISIE 166
P CS+ ++ +
Sbjct: 58 CPKCSVELFLNAK 70
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70,
FTSZ, structural protein; 2.10A {Thermotoga maritima}
(A:1-142,A:312-344)
Length = 175
Score = 25.6 bits (55), Expect = 8.2
Identities = 7/50 (14%), Positives = 16/50 (32%)
Query: 47 CTQSGGITDSLSALWSNVLRTTLSTTIGSSSCQVRTIEHLMAALYAYGID 96
+ + + R L + + + +V IE AA ++
Sbjct: 93 LFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPXAAAIGSNLN 142
>2vvf_A Major capsid protein P2; double jelly-roll viral capsid,
viral protein; 2.5A {Pseudoalteromonas phage PM2} PDB:
2w0c_A (A:1-139)
Length = 139
Score = 25.5 bits (56), Expect = 8.8
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 8/52 (15%)
Query: 66 RTTLSTTIGSSSCQVRTIEHLMAALYAYGIDNVIIEID---STEVPIMDGSA 114
R + ++ M AL G+ I+ D + P + A
Sbjct: 87 RPEMKGVNV-----TDLVQQRMFALGTVGLTTCEIKFDIDEAAAGPKLSAIA 133
>2pw9_A Putative formate dehydrogenase accessory protein; structural
genomics, unknown function, PSI-2, protein structure
initiative; 2.10A {Desulfotalea psychrophila LSV54}
(A:32-268)
Length = 237
Score = 25.2 bits (55), Expect = 9.7
Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 14/84 (16%)
Query: 198 FLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGLRYSGEEFVRHKTLDAIGDIALAG 257
L + C G L N+G L+ E+ RH +D + L G
Sbjct: 111 ALHSSPLGPQTHCVHGCGL------------WNNGRLQVYHEDVGRHNAVDKVLGSILLG 158
Query: 258 YPVIGC--YRSCRGSHEINHMALC 279
Y + R + ++
Sbjct: 159 RASNNSAVYTTGRLTSDMVLKCAR 182
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.322 0.137 0.404
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,282,931
Number of extensions: 102100
Number of successful extensions: 243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 17
Length of query: 296
Length of database: 4,956,049
Length adjustment: 88
Effective length of query: 208
Effective length of database: 1,981,209
Effective search space: 412091472
Effective search space used: 412091472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)