RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781175|ref|YP_003065588.1| UDP-3-O-[3-hydroxymyristoyl]
N-acetylglucosamine deacetylase [Candidatus Liberibacter asiaticus
str. psy62]
(296 letters)
>1p42_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase;
alpha+beta fold, hydrophobic tunnel, hydrolase; HET:
MYR; 2.00A {Aquifex aeolicus} SCOP: d.14.1.7 d.14.1.7
PDB: 1yh8_A* 1yhc_A* 2j65_A* 2ies_A* 2ier_A* 2o3z_A*
2jt2_A* 1xxe_A* 2go3_A* 2go4_A*
Length = 270
Score = 257 bits (658), Expect = 2e-69
Identities = 90/280 (32%), Positives = 138/280 (49%), Gaps = 12/280 (4%)
Query: 9 LQHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTT 68
L+ T+ + ++ G+GIH+G+ + L + P EG GI F + A V+ T
Sbjct: 2 LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNG-----VYIPARHEFVVHTN 56
Query: 69 LSTTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKT 128
ST +G +++T+EH+++ L+ I NV IE+ E+PI+DGS F E I + I
Sbjct: 57 HSTDLGFKGQRIKTVEHILSVLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKN-ILN 115
Query: 129 LTAKRRYLRIIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIGFQKWAGDLTQTVFRN 188
+ Y + + + + + P ++ EFKN +G QK+
Sbjct: 116 QNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKN-FLGRQKFTFVEG---NEE 171
Query: 189 EIYAARTFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGLRYSGEEFVRHKTLD 248
EI ARTF F ++E +K G G SL+N++V+ D+V N GLRY E VRHK D
Sbjct: 172 EIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLG-KDKVYNPEGLRYE-NEPVRHKVFD 229
Query: 249 AIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDSY 288
IGD+ L G PV G + S RG H +N + L +
Sbjct: 230 LIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQKLT 269
>2ves_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; LPXC,
hydrolase, BB-78485, antibiotics, lipid synthesis,
metalloprotease; HET: GVR; 1.90A {Pseudomonas
aeruginosa}
Length = 299
Score = 229 bits (584), Expect = 8e-61
Identities = 115/285 (40%), Positives = 176/285 (61%), Gaps = 5/285 (1%)
Query: 10 QHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTL 69
Q T+ + I TG+G+HSG++ L L PAP GI+F T + + + A NV TT+
Sbjct: 4 QRTLKNIIRATGVGLHSGEKVYLTLKPAPVDTGIVFSRTDLDPVVE-IPARAENVGETTM 62
Query: 70 STTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTL 129
STT+ +V T+EHL++A+ GIDN +E+ ++EVPIMDGSA FV +I+ G++
Sbjct: 63 STTLVKGDVKVDTVEHLLSAMAGLGIDNAYVELSASEVPIMDGSAGPFVFLIQSAGLQEQ 122
Query: 130 TAKRRYLRIIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIG--FQKWAGDLTQTVFR 187
A ++++RI + V + G+ A F P + I+F + + Q+ + D + T F
Sbjct: 123 EAAKKFIRIKREVSVEEGDKRAVFVPFDGFKVSFEIDFDHPVFRGRTQQASVDFSSTSFV 182
Query: 188 NEIYAARTFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGLRYSGEEFVRHKTL 247
E+ ARTFGF+RD+E R ALG S+EN++V+ +++V+N GLRY +EFV+HK L
Sbjct: 183 KEVSRARTFGFMRDIEYLRSQNLALGGSVENAIVVD-ENRVLNEDGLRYE-DEFVKHKIL 240
Query: 248 DAIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDSYEIVD 292
DAIGD+ L G +IG +R + H +N+ L TL ADKD++E+V
Sbjct: 241 DAIGDLYLLGNSLIGEFRGFKSGHALNNQLLRTLIADKDAWEVVT 285
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 41.5 bits (97), Expect = 2e-04
Identities = 55/341 (16%), Positives = 99/341 (29%), Gaps = 136/341 (39%)
Query: 11 HTIADSIT-ITGIGIHSGK---RANLKLC-----PAPEGVG-ILFKCTQSG--------- 51
H +A + + K + + P + LF+ G
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 52 --GITDS----LSALWSNVLRTTLSTTIGSSSCQVRTIEHLMAA------LYAYGIDNVI 99
G TD L L+ + I S+ T+ L+ ++ G++ ++
Sbjct: 162 GQGNTDDYFEELRDLY-QTYHVLVGDLIKFSA---ETLSELIRTTLDAEKVFTQGLN-IL 216
Query: 100 --IEIDSTEVPIMDGSAKAFVEV-IERIGIKTL-----TAK---------RRYLR----- 137
+E + + P D + + IG+ L TAK R YL+
Sbjct: 217 EWLE-NPSNTPDKDYLLSIPISCPL--IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 138 ---IIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIGFQKWAGDLTQTVFRNEIYAAR 194
++ +V I +SW F S+R I++ F + G R
Sbjct: 274 SQGLVTAVAIAETDSWESF--FVSVRKAITVLF---------FIG------VRCYEAYPN 316
Query: 195 TFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHG-----------GLRYSG-EEFV 242
T SL S++ ED + + L +++V
Sbjct: 317 T-------------------SLPPSIL--EDS--LENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 243 RH--KTL---DAIGDIAL---------AGYPVIGCYRSCRG 269
L + I+L +G P +S G
Sbjct: 354 NKTNSHLPAGKQVE-ISLVNGAKNLVVSGPP-----QSLYG 388
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.6 bits (78), Expect = 0.027
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 11/39 (28%)
Query: 81 RTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVE 119
+ ++ L A+L Y D DS P + + KA +E
Sbjct: 20 QALKKLQASLKLYA-D------DSA--PAL--AIKATME 47
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, mechanism, structure,
P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas
aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A*
1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A*
1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A*
1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Length = 394
Score = 26.9 bits (58), Expect = 5.8
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 8/80 (10%)
Query: 86 LMAA--LYAYGIDNVIIEIDSTEVPIMDGSAKAF----VEVIERIGIKTLTAKRRYLRII 139
L+ L+ GIDNVI+E + + + A V+++ G+ R +
Sbjct: 15 LLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGV--DRRMARDGLVH 72
Query: 140 KSVRITSGESWAEFSPHCSM 159
+ V I
Sbjct: 73 EGVEIAFAGQRRRIDLKRLS 92
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protein; HET:
TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 26.9 bits (58), Expect = 5.9
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 21/84 (25%)
Query: 86 LMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTLTAKRRYLRIIKSVRIT 145
+ A + ID ++E S V +G T + R + +
Sbjct: 20 YLKAAFDDRIDVTLVE--SGNVRR------------IGVGEATFSTVRHFFDYL------ 59
Query: 146 SGESWAEFSPHCSMRFEISIEFKN 169
G E+ P C+ +++ I F+N
Sbjct: 60 -GLDEREWLPRCAGGYKLGIRFEN 82
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.137 0.404
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,593,590
Number of extensions: 119842
Number of successful extensions: 310
Number of sequences better than 10.0: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 10
Length of query: 296
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 204
Effective length of database: 3,462,782
Effective search space: 706407528
Effective search space used: 706407528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.4 bits)