RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781175|ref|YP_003065588.1| UDP-3-O-[3-hydroxymyristoyl]
N-acetylglucosamine deacetylase [Candidatus Liberibacter asiaticus
str. psy62]
         (296 letters)



>d1p42a1 d.14.1.7 (A:2-127) UDP-3-O-[3-hydroxymyristoyl]
           N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus
           [TaxId: 63363]}
          Length = 120

 Score =  120 bits (302), Expect = 2e-28
 Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 5/119 (4%)

Query: 9   LQHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTT 68
           L+ T+ + ++  G+GIH+G+ + L + P  EG GI F           + A    V+ T 
Sbjct: 2   LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNG-----VYIPARHEFVVHTN 56

Query: 69  LSTTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIK 127
            ST +G    +++T+EH+++ L+   I NV IE+   E+PI+DGS   F E I +  + 
Sbjct: 57  HSTDLGFKGQRIKTVEHILSVLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKNILN 115


>d1p42a2 d.14.1.7 (A:128-280) UDP-3-O-[3-hydroxymyristoyl]
           N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus
           [TaxId: 63363]}
          Length = 147

 Score =  110 bits (277), Expect = 1e-25
 Identities = 51/151 (33%), Positives = 73/151 (48%), Gaps = 6/151 (3%)

Query: 135 YLRIIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIGFQKWAGDLTQTVFRNEIYAAR 194
           Y  + + + +       +  P  ++      EFKN  +G QK+           EI  AR
Sbjct: 2   YFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKN-FLGRQKFTFVEG---NEEEIVLAR 57

Query: 195 TFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGLRYSGEEFVRHKTLDAIGDIA 254
           TF F  ++E  +K G   G SL+N++V+   D+V N  GLRY   E VRHK  D IGD+ 
Sbjct: 58  TFAFDWEIEHIKKVGLGKGGSLKNTLVLG-KDKVYNPEGLRYE-NEPVRHKVFDLIGDLY 115

Query: 255 LAGYPVIGCYRSCRGSHEINHMALCTLFADK 285
           L G PV G + S RG H +N   +  L   +
Sbjct: 116 LLGSPVKGKFYSFRGGHSLNVKLVKELAKKQ 146


>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter
           crescentus [TaxId: 155892]}
          Length = 148

 Score = 25.1 bits (54), Expect = 6.6
 Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 3/30 (10%)

Query: 148 ESWAEFSPH---CSMRFEISIEFKNSIIGF 174
            +   F P      + F I   FK++++  
Sbjct: 92  NNGWRFMPEGDATRVEFVIEFAFKSALLDA 121


>d1s9ra_ d.126.1.4 (A:) Arginine deiminase {Mycoplasma arginini
           [TaxId: 2094]}
          Length = 409

 Score = 25.1 bits (54), Expect = 7.5
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 84  EHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIK 127
           E   AAL A GI   ++     ++ +  G+A+     + R  +K
Sbjct: 367 EKTNAALEAAGIK--VLPFHGNQLSLGMGNARCMSMPLSRKDVK 408


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0626    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,125,441
Number of extensions: 52266
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 11
Length of query: 296
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 211
Effective length of database: 1,240,546
Effective search space: 261755206
Effective search space used: 261755206
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)