RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781175|ref|YP_003065588.1| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Candidatus Liberibacter asiaticus str. psy62] (296 letters) >d1p42a1 d.14.1.7 (A:2-127) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus [TaxId: 63363]} Length = 120 Score = 120 bits (302), Expect = 2e-28 Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 5/119 (4%) Query: 9 LQHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTT 68 L+ T+ + ++ G+GIH+G+ + L + P EG GI F + A V+ T Sbjct: 2 LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNG-----VYIPARHEFVVHTN 56 Query: 69 LSTTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIK 127 ST +G +++T+EH+++ L+ I NV IE+ E+PI+DGS F E I + + Sbjct: 57 HSTDLGFKGQRIKTVEHILSVLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKNILN 115 >d1p42a2 d.14.1.7 (A:128-280) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus [TaxId: 63363]} Length = 147 Score = 110 bits (277), Expect = 1e-25 Identities = 51/151 (33%), Positives = 73/151 (48%), Gaps = 6/151 (3%) Query: 135 YLRIIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIGFQKWAGDLTQTVFRNEIYAAR 194 Y + + + + + P ++ EFKN +G QK+ EI AR Sbjct: 2 YFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKN-FLGRQKFTFVEG---NEEEIVLAR 57 Query: 195 TFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGLRYSGEEFVRHKTLDAIGDIA 254 TF F ++E +K G G SL+N++V+ D+V N GLRY E VRHK D IGD+ Sbjct: 58 TFAFDWEIEHIKKVGLGKGGSLKNTLVLG-KDKVYNPEGLRYE-NEPVRHKVFDLIGDLY 115 Query: 255 LAGYPVIGCYRSCRGSHEINHMALCTLFADK 285 L G PV G + S RG H +N + L + Sbjct: 116 LLGSPVKGKFYSFRGGHSLNVKLVKELAKKQ 146 >d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]} Length = 148 Score = 25.1 bits (54), Expect = 6.6 Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 3/30 (10%) Query: 148 ESWAEFSPH---CSMRFEISIEFKNSIIGF 174 + F P + F I FK++++ Sbjct: 92 NNGWRFMPEGDATRVEFVIEFAFKSALLDA 121 >d1s9ra_ d.126.1.4 (A:) Arginine deiminase {Mycoplasma arginini [TaxId: 2094]} Length = 409 Score = 25.1 bits (54), Expect = 7.5 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%) Query: 84 EHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIK 127 E AAL A GI ++ ++ + G+A+ + R +K Sbjct: 367 EKTNAALEAAGIK--VLPFHGNQLSLGMGNARCMSMPLSRKDVK 408 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.322 0.137 0.404 Gapped Lambda K H 0.267 0.0626 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,125,441 Number of extensions: 52266 Number of successful extensions: 122 Number of sequences better than 10.0: 1 Number of HSP's gapped: 119 Number of HSP's successfully gapped: 11 Length of query: 296 Length of database: 2,407,596 Length adjustment: 85 Effective length of query: 211 Effective length of database: 1,240,546 Effective search space: 261755206 Effective search space used: 261755206 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 53 (24.4 bits)