BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781175|ref|YP_003065588.1| UDP-3-O-[3-hydroxymyristoyl]
N-acetylglucosamine deacetylase [Candidatus Liberibacter asiaticus
str. psy62]
         (296 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781175|ref|YP_003065588.1| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 296

 Score =  610 bits (1573), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 296/296 (100%), Positives = 296/296 (100%)

Query: 1   MEMLQIGRLQHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSAL 60
           MEMLQIGRLQHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSAL
Sbjct: 1   MEMLQIGRLQHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSAL 60

Query: 61  WSNVLRTTLSTTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEV 120
           WSNVLRTTLSTTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEV
Sbjct: 61  WSNVLRTTLSTTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEV 120

Query: 121 IERIGIKTLTAKRRYLRIIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIGFQKWAGD 180
           IERIGIKTLTAKRRYLRIIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIGFQKWAGD
Sbjct: 121 IERIGIKTLTAKRRYLRIIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIGFQKWAGD 180

Query: 181 LTQTVFRNEIYAARTFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGLRYSGEE 240
           LTQTVFRNEIYAARTFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGLRYSGEE
Sbjct: 181 LTQTVFRNEIYAARTFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGLRYSGEE 240

Query: 241 FVRHKTLDAIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDSYEIVDDHGA 296
           FVRHKTLDAIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDSYEIVDDHGA
Sbjct: 241 FVRHKTLDAIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDSYEIVDDHGA 296


>gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 465

 Score = 29.6 bits (65), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query: 50  SGGITDSLSALWSNVLRTTLSTTIGSSSCQVRTIEHLMAALYA 92
           S  +TD L  +  N L+      + + S    TIEH   A YA
Sbjct: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226


>gi|254781108|ref|YP_003065521.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 398

 Score = 24.3 bits (51), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 4/30 (13%)

Query: 37  APEGVGILFKCTQSGG----ITDSLSALWS 62
            PEG  +L KCT S G    + DS   L S
Sbjct: 350 PPEGQDLLRKCTDSSGQFFAVNDSRELLES 379


>gi|254780670|ref|YP_003065083.1| phosphopyruvate hydratase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 424

 Score = 24.3 bits (51), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 245 KTLDAIGDIALAGYPVIGCYRSCRG-SHEINHMALCT 280
           +TL+ I    +AGYP I  +RS     H I  +A+ T
Sbjct: 344 ETLNTIEKAQMAGYPSIISHRSGETEDHTIADLAVAT 380


>gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 820

 Score = 24.3 bits (51), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 228 VMNHGGLRYSGEEFVRHKTLDAIGDIALAG 257
           V +HG L Y+   F+      ++ DI +AG
Sbjct: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364


>gi|254781022|ref|YP_003065435.1| hypothetical protein CLIBASIA_04620 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 163

 Score = 23.5 bits (49), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 2   EMLQIGRLQHTIADSITITGIGI 24
           + L IG + H +AD +T TGI +
Sbjct: 104 DALIIGYVSHLVADVLTPTGIPL 126


>537021.9.peg.410_1 
          Length = 952

 Score = 22.7 bits (47), Expect = 8.3,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 234 LRYSGEEFVRHKTLDAIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDSYE-IVD 292
           +RY  ++ + H  +D + D +L  + VI          +  H +  TLFA  D  + I  
Sbjct: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228

Query: 293 DHGA 296
            HGA
Sbjct: 229 FHGA 232


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.137    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,447
Number of Sequences: 1233
Number of extensions: 7077
Number of successful extensions: 20
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 8
length of query: 296
length of database: 328,796
effective HSP length: 73
effective length of query: 223
effective length of database: 238,787
effective search space: 53249501
effective search space used: 53249501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 38 (19.2 bits)