HHsearch alignment for GI: 254781176 and conserved domain: cd01483
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.94 E-value=0.56 Score=26.56 Aligned_cols=104 Identities=16% Similarity=0.344 Sum_probs=62.5
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHH------
Q ss_conf 17999966814799999998589984499982557885518997048515542556788888389999999729------
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECI------ 89 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~------ 89 (502)
T Consensus 1 kVlivG~GglG~~va~~L~~~Gv~--~i~ivD~D~--v~~~Nl~Rq~~~~-----------~~dvG~~Ka~~a~~~l~~~ 65 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVG--KITLIDFDT--VELSNLNRQFLAR-----------QADIGKPKAEVAARRLNEL 65 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCC--CEEEEECCC--CCCCCCCCCCCCC-----------HHHHCCHHHHHHHHHHHHH
T ss_conf 999999798999999999993797--199997898--7500146422589-----------8894922489999999856
Q ss_pred ---------------HHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf ---------------99999726998999980367666740789999999864984999950430
Q gi|254781176|r 90 ---------------DEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPF 139 (502)
Q Consensus 90 ---------------~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf 139 (502)
T Consensus 66 np~v~i~~~~~~~~~~~~~~~~~~~dvvi~~~D-----~~~~r~~l~~~~~~~~ip~i~~~~~g~ 125 (143)
T cd01483 66 NPGVNVTAVPEGISEDNLDDFLDGVDLVIDAID-----NIAVRRALNRACKELGIPVIDAGGLGL 125 (143)
T ss_pred CCCCEEEEEECCCCHHHHHHHHCCCCEEEECCC-----CHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 898389999456896469999759999998779-----999999999999986998899636676