HHsearch alignment for GI: 254781176 and conserved domain: cd01483

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.94  E-value=0.56  Score=26.56  Aligned_cols=104  Identities=16%  Similarity=0.344  Sum_probs=62.5

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHH------
Q ss_conf             17999966814799999998589984499982557885518997048515542556788888389999999729------
Q gi|254781176|r   16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECI------   89 (502)
Q Consensus        16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~------   89 (502)
T Consensus         1 kVlivG~GglG~~va~~L~~~Gv~--~i~ivD~D~--v~~~Nl~Rq~~~~-----------~~dvG~~Ka~~a~~~l~~~   65 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVG--KITLIDFDT--VELSNLNRQFLAR-----------QADIGKPKAEVAARRLNEL   65 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHHCCC--CEEEEECCC--CCCCCCCCCCCCC-----------HHHHCCHHHHHHHHHHHHH
T ss_conf             999999798999999999993797--199997898--7500146422589-----------8894922489999999856


Q ss_pred             ---------------HHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             ---------------99999726998999980367666740789999999864984999950430
Q gi|254781176|r   90 ---------------DEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPF  139 (502)
Q Consensus        90 ---------------~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf  139 (502)
T Consensus        66 np~v~i~~~~~~~~~~~~~~~~~~~dvvi~~~D-----~~~~r~~l~~~~~~~~ip~i~~~~~g~  125 (143)
T cd01483          66 NPGVNVTAVPEGISEDNLDDFLDGVDLVIDAID-----NIAVRRALNRACKELGIPVIDAGGLGL  125 (143)
T ss_pred             CCCCEEEEEECCCCHHHHHHHHCCCCEEEECCC-----CHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             898389999456896469999759999998779-----999999999999986998899636676