HHsearch alignment for GI: 254781176 and conserved domain: cd02186
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=99.22 E-value=1.9e-10 Score=96.47 Aligned_cols=273 Identities=15% Similarity=0.193 Sum_probs=176.7
Q ss_pred EEEEEECCCHHHHHHHHHH-----CCCC---------------------------C---CEEEEECCCHHHHHHCCCCE-
Q ss_conf 7999966814799999998-----5899---------------------------8---44999825578855189970-
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVS-----SGLQ---------------------------G---VNFVVANTDAQALMMSKAKQ- 60 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~-----~~~~---------------------------~---~~~~~~ntd~~~l~~~~~~~- 60 (502)
T Consensus 3 II~iqvGQcGnQIG~~fW~~~~~EH~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRavliD~E~~vI~~i~~~~~ 82 (434)
T cd02186 3 VISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTGTY 82 (434)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCHHHHHHHHCCCC
T ss_conf 89995376199999999999999848698988068766543212111247778999872677999897578888847764
Q ss_pred -EEEE-CCCCCCCCCCCCCHHH-----HHHHHHHHHHHHHHHHCCCCE---EEEEECCCCCCCCCHHHHHHHHHHHC--C
Q ss_conf -4851-5542556788888389-----999999729999997269989---99980367666740789999999864--9
Q gi|254781176|r 61 -IIQL-GSGITEGLGAGSHPEV-----GRAAAEECIDEITEMLDKTHM---CFVTAGMGGGTGTGAAPIIAKIARNK--G 128 (502)
Q Consensus 61 -~~~~-g~~~~~g~g~g~~~~~-----g~~~a~~~~~~i~~~~~~~~~---~~~~ag~gggtgtg~~p~ia~~a~~~--~ 128 (502)
T Consensus 83 ~~lf~~~~~i~~~~gaGNNwA~Gy~~~G~~~~d~i~d~IRkevE~CD~l~gf~~~hSl~GGTGSGlGs~lle~L~d~yp~ 162 (434)
T cd02186 83 RQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDYGK 162 (434)
T ss_pred CCCCCCHHEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 01268300455689976677006552355578899999999997389866436785368876232999999998765551
Q ss_pred CEEEEEEECCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8499995043000406--7888899999999986333545027888741366531899-974467999999888887651
Q gi|254781176|r 129 VLTVGVVTKPFHFEGS--RRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFAD-AFSMADQVLYSGVSCITDLMI 205 (502)
Q Consensus 129 ~~~~~~v~~pf~~eg~--~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~-af~~~d~~l~~~v~~i~~~i~ 205 (502)
T Consensus 163 ~~~~~~sV~Ps~~~~~~vvepYNsvLsl~~L~e~sd~~~~~dN~aL~~i~~~~l~i~~ps~~~~N~vIa~~is~~T~~~R 242 (434)
T cd02186 163 KSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITASLR 242 (434)
T ss_pred CEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 10544478558656785032244044366687418569996449999999984699999878999999998258876555
Q ss_pred CCCCCCCCHHHHHHHHCC-CCEEEEEEEECC----C----CCHHHHHHHHHHHCCC--CCCCCCCCCCEEE--EEEECCC
Q ss_conf 665555898787876415-865899876148----6----2048999988752701--0002245553789--9961688
Q gi|254781176|r 206 KEGLINLDFADVRSVMRN-MGRAMMGTGEAS----G----HGRGIQAAEAAVANPL--LDEASMKGSQGLL--ISITGGS 272 (502)
Q Consensus 206 ~~g~in~df~d~~~v~~~-~g~a~~g~g~~~----g----~~r~~~a~~~a~~~pl--l~~~~~~~a~~~l--~~i~~~~ 272 (502)
T Consensus 243 f~g~ln~dl~~l~~nLvP~P~l~f~~~s~~P~~~~~~~~~~~~~~~~l~~~lf~~~~~~~~~~~~~~~~ls~~~~~RG-- 320 (434)
T cd02186 243 FDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRG-- 320 (434)
T ss_pred CCCCCCCCHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHCCCHHHHHHHHHCCHHCEECCCCCCCCHHHHHHHHHC--
T ss_conf 786557688998405788865301221477425756652012769999998733032116568999708889998807--
Q ss_pred CCCHHHHHHHHHHHHHHCC
Q ss_conf 8899999999999997416
Q gi|254781176|r 273 DLTLFEVDEAATRIREEVD 291 (502)
Q Consensus 273 ~~~l~e~~~~~~~i~~~~~ 291 (502)
T Consensus 321 ~~~~~~~~~~~~~l~~~~~ 339 (434)
T cd02186 321 DVVPKDVNAAVATIKTKRT 339 (434)
T ss_pred CCCHHHHHHHHHHHHHHCC
T ss_conf 9876789999999997468