HHsearch alignment for GI: 254781176 and conserved domain: cd02188
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=99.28 E-value=1.1e-10 Score=98.27 Aligned_cols=269 Identities=18% Similarity=0.249 Sum_probs=172.9
Q ss_pred EEEEEECCCHHHHHHHHHHC-----CC-------------------------CC---CEEEEECCCHHHHHHCCCCE---
Q ss_conf 79999668147999999985-----89-------------------------98---44999825578855189970---
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVSS-----GL-------------------------QG---VNFVVANTDAQALMMSKAKQ--- 60 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~~-----~~-------------------------~~---~~~~~~ntd~~~l~~~~~~~--- 60 (502)
T Consensus 3 II~iqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRavliD~E~~vI~~i~~~~~~~ 82 (431)
T cd02188 3 IITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEYRN 82 (431)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCHHHHHHHHCCCCCC
T ss_conf 89995377298999999999999858698998777766555554423788899977367799989816898884686514
Q ss_pred -----EEEECCCCCCCCCCCCCHHH----HHHHHHHHHHHHHHHHCCCCE---EEEEECCCCCCCCCHHHHHHHHHHHC-
Q ss_conf -----48515542556788888389----999999729999997269989---99980367666740789999999864-
Q gi|254781176|r 61 -----IIQLGSGITEGLGAGSHPEV----GRAAAEECIDEITEMLDKTHM---CFVTAGMGGGTGTGAAPIIAKIARNK- 127 (502)
Q Consensus 61 -----~~~~g~~~~~g~g~g~~~~~----g~~~a~~~~~~i~~~~~~~~~---~~~~ag~gggtgtg~~p~ia~~a~~~- 127 (502)
T Consensus 83 lf~~~n~~~~---~~~~gsgnNwA~GY~~G~~~~d~i~d~irk~~E~cD~l~gf~~~~Sl~GGTGSGlgs~l~e~l~d~y 159 (431)
T cd02188 83 LYNPENIFLS---KHGGGAGNNWASGYSQGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRY 159 (431)
T ss_pred CCCCCCEEEE---CCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 4385437983---4578876644756454399899999999999980887565688974488675408999999999871
Q ss_pred -CCEEEEEEECCCCC-CCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf -98499995043000-4067--888899999999986333545027888741366531899-974467999999888887
Q gi|254781176|r 128 -GVLTVGVVTKPFHF-EGSR--RMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFAD-AFSMADQVLYSGVSCITD 202 (502)
Q Consensus 128 -~~~~~~~v~~pf~~-eg~~--r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~-af~~~d~~l~~~v~~i~~ 202 (502)
T Consensus 160 p~~~i~~~~V~P~~~~~~~vivqpYNsvLsl~~L~e~sd~v~~~dN~aL~~i~~~~l~~~~~~~~~~N~vIa~~ls~~t~ 239 (431)
T cd02188 160 PKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSASTT 239 (431)
T ss_pred CCCEEEEEEEECCCCCCCCCEEECCHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 50307568986688666770433236465378898608656862538899999985599998878899999998603553
Q ss_pred HHHCCCCCCCCHHHHHHHHC-CCCEEEEEEEECC-----CCCH-----HHHHHHHHHH--CCCCCCCCCCCCCEEE---E
Q ss_conf 65166555589878787641-5865899876148-----6204-----8999988752--7010002245553789---9
Q gi|254781176|r 203 LMIKEGLINLDFADVRSVMR-NMGRAMMGTGEAS-----GHGR-----GIQAAEAAVA--NPLLDEASMKGSQGLL---I 266 (502)
Q Consensus 203 ~i~~~g~in~df~d~~~v~~-~~g~a~~g~g~~~-----g~~r-----~~~a~~~a~~--~pll~~~~~~~a~~~l---~ 266 (502)
T Consensus 240 ~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~-~~~~-~~~~~ls~~ 317 (431)
T cd02188 240 TLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVS-TATR-KNGCYISIL 317 (431)
T ss_pred CEECCCCCCCCHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHCCCHHHHHHHHHCCCCCEEE-CCCC-CCCHHHHHH
T ss_conf 12358634765899976068875532210145665343210124038899999997482466562-3688-785577779
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9616888899999999999997416
Q gi|254781176|r 267 SITGGSDLTLFEVDEAATRIREEVD 291 (502)
Q Consensus 267 ~i~~~~~~~l~e~~~~~~~i~~~~~ 291 (502)
T Consensus 318 ~~~RG-~~~~~~~~~~~~~~~~~~~ 341 (431)
T cd02188 318 NIIQG-EVDPTQVHKSLQRIRERRL 341 (431)
T ss_pred HHHCC-CCCHHHHHHHHHHHHHHCC
T ss_conf 98848-9887899999999987367