HHsearch alignment for GI: 254781176 and conserved domain: cd02189
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=99.10 E-value=2.8e-09 Score=87.93 Aligned_cols=200 Identities=17% Similarity=0.258 Sum_probs=139.8
Q ss_pred EEEEEECCCHHHHHHHHHHC-----C------------------------CCCCEEEEECCCHHHHHHCCCC-EEEE--E
Q ss_conf 79999668147999999985-----8------------------------9984499982557885518997-0485--1
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVSS-----G------------------------LQGVNFVVANTDAQALMMSKAK-QIIQ--L 64 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~~-----~------------------------~~~~~~~~~ntd~~~l~~~~~~-~~~~--~ 64 (502)
T Consensus 2 II~iqvGQcGnQIG~~fW~~l~~E~~~~~~~~~~~~~~~~~~ff~e~~~~~~vpRavliD~Ep~vI~~i~~~~~~~~~~~ 81 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYKYERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSSGGTWKY 81 (446)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCC
T ss_conf 78997487499999999999997318897766455543300000055699650577999887238999856665554667
Q ss_pred CC--CCCCCCCCCCCH-----HHHHHHHHHHHHHHHHHHCCCCE---EEEEECCCCCCCCCHHHHHHHHHHHC--CCEEE
Q ss_conf 55--425567888883-----89999999729999997269989---99980367666740789999999864--98499
Q gi|254781176|r 65 GS--GITEGLGAGSHP-----EVGRAAAEECIDEITEMLDKTHM---CFVTAGMGGGTGTGAAPIIAKIARNK--GVLTV 132 (502)
Q Consensus 65 g~--~~~~g~g~g~~~-----~~g~~~a~~~~~~i~~~~~~~~~---~~~~ag~gggtgtg~~p~ia~~a~~~--~~~~~ 132 (502)
T Consensus 82 ~~~n~i~~~~gsgNNwA~Gy~~~G~~~~d~i~d~IRk~~E~CD~lqGF~i~hSlgGGTGSGlGs~lle~L~d~yp~~~~~ 161 (446)
T cd02189 82 DKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESLLL 161 (446)
T ss_pred CCCCEEECCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 85307877878522104530042588899999999999973577576677840578675417778889988766875056
Q ss_pred EEEECCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 995043000-4067888899999999986333545027888741366531899-97446799999988888765166555
Q gi|254781176|r 133 GVVTKPFHF-EGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFAD-AFSMADQVLYSGVSCITDLMIKEGLI 210 (502)
Q Consensus 133 ~~v~~pf~~-eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~-af~~~d~~l~~~v~~i~~~i~~~g~i 210 (502)
T Consensus 162 ~~~V~P~~~~evvvepYNs~Lsl~~L~e~sD~v~~~dN~aL~~i~~~~~~~~~~~~~~lN~~Ia~~ls~~~~p~~~~~~~ 241 (446)
T cd02189 162 NIVVWPYTTGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQPSLDSTGS 241 (446)
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 68960577886200125307778889852763466118889999998548999986789999999985113434357764
Q ss_pred CCCHHH
Q ss_conf 589878
Q gi|254781176|r 211 NLDFAD 216 (502)
Q Consensus 211 n~df~d 216 (502)
T Consensus 242 ~~~~~~ 247 (446)
T cd02189 242 NGALAG 247 (446)
T ss_pred CCCCHH
T ss_conf 555502