HHsearch results for GI: 254781176 and protein with PDBid: 1tvk_B
>1tvk_B Tubulin beta chain; epothilone, taxol, ligand interactions, cell cycle, structural protein; HET: GDP GTP EP; 2.89A {Bos taurus} SCOP: c.32.1.1 d.79.2.1 PDB: 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* 2hxf_B* 2hxh_B* 2p4n_B* 2wbe_B* 3dco_B* 3edl_B* 1z2b_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* ...
Probab=98.77 E-value=1.1e-08 Score=82.03 Aligned_cols=270 Identities=16% Similarity=0.185 Sum_probs=169.5
Q ss_pred EEEEEECCCHHHHHHHHHHCCCC---------------------C------------CEEEEECCCHHHHHHCCC--CEE
Q ss_conf 79999668147999999985899---------------------8------------449998255788551899--704
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVSSGLQ---------------------G------------VNFVVANTDAQALMMSKA--KQI 61 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~~~~~---------------------~------------~~~~~~ntd~~~l~~~~~--~~~ 61 (502)
|-.|-||+||+.+=+.+.+.=.. . ..-+.+++|.+.++.... ..+
T Consensus 4 IItlqvGQcGnQiG~~~w~~l~~Eh~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRav~iD~e~~vi~~i~~~~~~~ 83 (427)
T 1tvk_B 4 IVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQ 83 (427)
T ss_dssp EEECCBHHHHHHHHHHHTTTTTGGGCBCSSSCBCCSSSSTTSSGGGTCCBSSTTSBCCSBCBBCSCTTTHHHHHTSSTTT
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCHHHHHHHHCCCCCC
T ss_conf 89995478799999999999999719998888078764111224553257889967145699989817999986575434
Q ss_pred E-EECCCCCCCCCCCCCHHHHH-----HHHHHHHHHHHHHHCCCCE---EEEEECCCCCCCCCHHHHHHHHHHHC-C---
Q ss_conf 8-51554255678888838999-----9999729999997269989---99980367666740789999999864-9---
Q gi|254781176|r 62 I-QLGSGITEGLGAGSHPEVGR-----AAAEECIDEITEMLDKTHM---CFVTAGMGGGTGTGAAPIIAKIARNK-G--- 128 (502)
Q Consensus 62 ~-~~g~~~~~g~g~g~~~~~g~-----~~a~~~~~~i~~~~~~~~~---~~~~ag~gggtgtg~~p~ia~~a~~~-~--- 128 (502)
+ .--.-++.-.|+|.+--.|. ..-++-.+.|++.++.+|- .+++-.||||||+|..-.|.+.-++. .
T Consensus 84 ~~~~~~~~~~~~gsgnnwa~Gy~~~g~~~~~~i~d~irk~~E~cD~l~gf~~~~Sl~GGTGSGlgs~l~e~l~d~yp~~~ 163 (427)
T 1tvk_B 84 IFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRI 163 (427)
T ss_dssp TSCSTTBCCCSSCCTTCHHHHTTTTTTTTTTTHHHHHHHHHTSSSCEEEEECEEESSSSTTTHHHHHHHHHHTTTCSSSE
T ss_pred CCCCCCEEECCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 43776546557884104067035655889999999999998717875573434004776777588889999987625031
Q ss_pred CEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 849999504300-04067888899999999986333545027888741366531899-9744679999998888876516
Q gi|254781176|r 129 VLTVGVVTKPFH-FEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFAD-AFSMADQVLYSGVSCITDLMIK 206 (502)
Q Consensus 129 ~~~~~~v~~pf~-~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~-af~~~d~~l~~~v~~i~~~i~~ 206 (502)
++++.|+ -|+. -|-..-.=++.-.|..|.+++|.+|++.||.|.++....+.... .|.-.|.++++.+.+++..+.-
T Consensus 164 ~~~~~V~-p~~~~~e~vvq~YNtiLsl~~l~e~sd~ii~~~NdaL~~ic~~~~~~~~~~~~~~N~via~~ls~~t~~~rf 242 (427)
T 1tvk_B 164 MNTFSVV-PSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRF 242 (427)
T ss_dssp ECCEEEE-CCSSCCSSSSHHHHHHHHHHHHTTTCSCEECEETTHHHHHHHTSSCCSSCCHHHHHHHHHHHHHHHTGGGSS
T ss_pred EEEEEEE-CCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 1047985-785568704644285887999997088359922899999999862789998578789888762035433547
Q ss_pred CCCCCCCHHHHHHHHC-CCCEEEEEEEECC--CCC------HHHHHHHHHHHCCCCCC--CCCCCC--CEEEEEEECCCC
Q ss_conf 6555589878787641-5865899876148--620------48999988752701000--224555--378999616888
Q gi|254781176|r 207 EGLINLDFADVRSVMR-NMGRAMMGTGEAS--GHG------RGIQAAEAAVANPLLDE--ASMKGS--QGLLISITGGSD 273 (502)
Q Consensus 207 ~g~in~df~d~~~v~~-~~g~a~~g~g~~~--g~~------r~~~a~~~a~~~pll~~--~~~~~a--~~~l~~i~~~~~ 273 (502)
||..|.|+.++.+-|- ....-++-...+. ... .....+.+.+-++.-.. .+.+.. -...+-+.| +
T Consensus 243 ~g~~n~~l~~l~~nLvp~P~~~fl~~s~~p~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~~~~ls~~~~~RG--~ 320 (427)
T 1tvk_B 243 PGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRG--R 320 (427)
T ss_dssp CBTTCCCHHHHHHHHCSSTTCCEECEECSCCCCTTTCCCCCCCSTTHHHHHTSSSSBSSSSCGGGSCBSCCCCEEES--S
T ss_pred CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC--C
T ss_conf 74457778998540577855210114401201534454230769999999841431622479988625889999748--8
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 8999999999999974
Q gi|254781176|r 274 LTLFEVDEAATRIREE 289 (502)
Q Consensus 274 ~~l~e~~~~~~~i~~~ 289 (502)
....++.+....++.+
T Consensus 321 ~~~~~~~~~~~~~k~k 336 (427)
T 1tvk_B 321 MSMKEVDEQMLNVQNK 336 (427)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 8677899999999863