HHsearch results for GI: 254781176 and protein with PDBid: 1y6j_A
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1
Probab=94.71 E-value=0.098 Score=30.54 Aligned_cols=105 Identities=17% Similarity=0.231 Sum_probs=64.8
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCC-----HHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 861799996681479999999858998449998255-----788551899704851554255678888838999999972
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTD-----AQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEEC 88 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd-----~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~ 88 (502)
++||.|||.|.-|......+...++.+ +++.++.+ .++++.+.+-- .++.. +.. .++.
T Consensus 7 ~~KV~IiGaG~VG~~~a~~l~~~~~~~-el~L~Di~~~~~~g~a~DL~~~~~--~~~~~--~~~--~~~~---------- 69 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTAN-ELVLIDVFKEKAIGEAMDINHGLP--FMGQM--SLY--AGDY---------- 69 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSS-EEEEECCC---CCHHHHHHTTSCC--CTTCE--EEC----CG----------
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCC-EEEEEECCCCHHHHHHHHHHCCCC--CCCCC--EEC--CCCH----------
T ss_conf 993899897989999999998279998-699990789707999999866575--68985--430--4887----------
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCC-------HHHHHHHHHHHC----CCEEEEEEECCCC
Q ss_conf 999999726998999980367666740-------789999999864----9849999504300
Q gi|254781176|r 89 IDEITEMLDKTHMCFVTAGMGGGTGTG-------AAPIIAKIARNK----GVLTVGVVTKPFH 140 (502)
Q Consensus 89 ~~~i~~~~~~~~~~~~~ag~gggtgtg-------~~p~ia~~a~~~----~~~~~~~v~~pf~ 140 (502)
+.|.|+|+|+||||..-..|.- -++++.++++.. ---.+.|||-|-+
T Consensus 70 -----~~~~~advvvitag~~rk~g~~R~dll~~Na~I~~~~~~~i~~~~p~~iv~vvsNPvd 127 (318)
T 1y6j_A 70 -----SDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD 127 (318)
T ss_dssp -----GGGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHH
T ss_pred -----HHHCCCCEEEECCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHCCCCCEEEEECCCCH
T ss_conf -----8847888899728988999998778876566899999877642367728998079607