RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781176|ref|YP_003065589.1| cell division protein FtsZ [Candidatus Liberibacter asiaticus str. psy62] (502 letters) >1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Length = 320 Score = 388 bits (999), Expect = e-108 Identities = 152/316 (48%), Positives = 213/316 (67%) Query: 8 MDITELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSG 67 +D I V GV NAVN+M + ++GV F+ ANTDAQAL A+ ++QLG G Sbjct: 5 VDNIAQTAVIKVIGVXXXXXNAVNHMAKNNVEGVEFICANTDAQALKNIAARTVLQLGPG 64 Query: 68 ITEGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNK 127 +T+GLGAG++PEVGR AA E + I+E+L+ M F+T GMGGGTGTGAAPIIA++A+ Sbjct: 65 VTKGLGAGANPEVGRQAALEDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEM 124 Query: 128 GVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFS 187 G+LTV VVT+PF FEG +RM++A+ GI AL E+VD+LI IPN+ L I + AF+ Sbjct: 125 GILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTILGKDASLLAAFA 184 Query: 188 MADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAA 247 AD VL V I+D++ + G+IN+DFADV++VM MG AMMGTG ASG R +A EAA Sbjct: 185 KADDVLAGAVRGISDIIKRPGMINVDFADVKTVMSEMGMAMMGTGCASGPNRAREATEAA 244 Query: 248 VANPLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALE 307 + NPLL++ +++G++G+L++IT G DL+L E + I + A + +G D + Sbjct: 245 IRNPLLEDVNLQGARGILVNITAGPDLSLGEYSDVGNIIEQFASEHATVKVGTVIDADMR 304 Query: 308 GVIRVSVVATGIENRL 323 + V+VVATG+ RL Sbjct: 305 DELHVTVVATGLGARL 320 >2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Length = 364 Score = 321 bits (825), Expect = 2e-88 Identities = 139/313 (44%), Positives = 198/313 (63%), Gaps = 2/313 (0%) Query: 10 ITELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGIT 69 + + K +ITV G GG G N + + G++G V NTDAQ L+ +KA + I +G +T Sbjct: 33 LQQTKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKADKKILIGKKLT 92 Query: 70 EGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGV 129 GLGAG +P++G AA+E +EI + + M F+T G+GGGTGTG+AP++A+I++ G Sbjct: 93 RGLGAGGNPKIGEEAAKESAEEIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGA 152 Query: 130 LTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMA 189 LTV VVT PF EG RM+ A G+E L++ DTL+VIPN+ LF I + AF +A Sbjct: 153 LTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIVPNM-PLKLAFKVA 211 Query: 190 DQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVA 249 D+VL + V + +L+ K+GLIN+DFADV++VM N G AM+G GE+ R +A A+ Sbjct: 212 DEVLINAVKGLVELITKDGLINVDFADVKAVMNNGGLAMIGIGESDSEKRAKEAVSMALN 271 Query: 250 NPLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALEGV 309 +PLLD + G+ G LI + G DLTL E E + +D A II GAT DE LE Sbjct: 272 SPLLD-VDIDGATGALIHVMGPEDLTLEEAREVVATVSSRLDPNATIIWGATIDENLENT 330 Query: 310 IRVSVVATGIENR 322 +RV +V TG+++R Sbjct: 331 VRVLLVITGVQSR 343 >1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Length = 353 Score = 319 bits (819), Expect = 9e-88 Identities = 134/311 (43%), Positives = 190/311 (61%), Gaps = 4/311 (1%) Query: 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLG 73 +I V GVGG G NA+N M+ G+ GV FV NTD Q L S A IQ+G IT GLG Sbjct: 21 NLKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASNADVKIQIGENITRGLG 80 Query: 74 AGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVG 133 AG PE+G AA E ++I E+L THM F+TAG GGGTGTGA+P+IAKIA+ G+LTV Sbjct: 81 AGGRPEIGEQAALESEEKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTVA 140 Query: 134 VVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVL 193 +VT PF+FEG R++ A G++ L++ VDTLI I N L DAF AD+ L Sbjct: 141 IVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKISNNKLMEELPRDVKIKDAFLKADETL 200 Query: 194 YSGVSCITDLMIKEGLINL--DFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVANP 251 + GV I++L+ K G I L FA + SVM++ G A++G G G R +AA+ A+ + Sbjct: 201 HQGVKGISELITKRGYIRLTSRFARIESVMKDAGAAILGIGVGKGEHRAREAAKKAMESK 260 Query: 252 LLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEAL-EGVI 310 L++ ++ + ++ +IT S++ + EV EAA IR+ +A++ G FD+ + + I Sbjct: 261 LIE-HPVENASSIVFNITAPSNIRMEEVHEAAMIIRQNSSEDADVKFGLIFDDEVPDDEI 319 Query: 311 RVSVVATGIEN 321 RV +AT + Sbjct: 320 RVIFIATRFPD 330 >2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Length = 394 Score = 316 bits (811), Expect = 7e-87 Identities = 158/377 (41%), Positives = 228/377 (60%), Gaps = 5/377 (1%) Query: 8 MDITELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSG 67 +D I V GV NAVN+M + ++GV F+ ANTDAQAL A+ ++QLG G Sbjct: 5 VDNIAQTAVIKVIGVXXXXXNAVNHMAKNNVEGVEFICANTDAQALKNIAARTVLQLGPG 64 Query: 68 ITEGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNK 127 +T+GLGAG++PEVGR AA E + I+E+L+ M F+T GMGGGTGTGAAPIIA++A+ Sbjct: 65 VTKGLGAGANPEVGRQAALEDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEM 124 Query: 128 GVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFS 187 G+LTV VVT+PF FEG +RM++A+ GI AL E+VD+LI IPN+ L I + AF+ Sbjct: 125 GILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTILGKDASLLAAFA 184 Query: 188 MADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAA 247 AD VL V I+D++ + G+IN+DFADV++VM MG AMMGTG ASG R +A EAA Sbjct: 185 KADDVLAGAVRGISDIIKRPGMINVDFADVKTVMSEMGMAMMGTGCASGPNRAREATEAA 244 Query: 248 VANPLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALE 307 + NPLL++ +++G++G+L++IT G DL+L E + I + A + +G D + Sbjct: 245 IRNPLLEDVNLQGARGILVNITAGPDLSLGEYSDVGNIIEQFASEHATVKVGTVIDADMR 304 Query: 308 GVIRVSVVATGIENRLHR-----DGDDNRDSSLTTHESLKNAKFLNLSSPKLPVEDSHVM 362 + V+VVATG+ RL + D ++ + + + +N P + Sbjct: 305 DELHVTVVATGLGARLEKPVKVVDNTVQGSAAQAAAPAQREQQSVNYRDLDRPTVMRNQS 364 Query: 363 HHSVIAENAHCTDNQED 379 H S + D Sbjct: 365 HGSAATAAKLNPQDDLD 381 Score = 33.2 bits (75), Expect = 0.13 Identities = 15/61 (24%), Positives = 25/61 (40%) Query: 440 HENIASEEDSVHMKSESTVSYLRERNPSISEESIDDFCVQSKPTVKCEEDKLEIPAFLRR 499 + A + +S +R + +S +K + + D L+IPAFLRR Sbjct: 332 QGSAAQAAAPAQREQQSVNYRDLDRPTVMRNQSHGSAATAAKLNPQDDLDYLDIPAFLRR 391 Query: 500 Q 500 Q Sbjct: 392 Q 392 >2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Length = 382 Score = 315 bits (808), Expect = 1e-86 Identities = 166/358 (46%), Positives = 235/358 (65%), Gaps = 1/358 (0%) Query: 8 MDITELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSG 67 + I V GVGGGG NAVN M+ + +QGV ++ NTDAQAL +SKA+ +Q+G+ Sbjct: 5 ETNIDGLASIKVIGVGGGGNNAVNRMIENEVQGVEYIAVNTDAQALNLSKAEVKMQIGAK 64 Query: 68 ITEGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNK 127 +T GLGAG++PEVG+ AAEE ++I E L M FVTAGMGGGTGTGAAP+IA+IA++ Sbjct: 65 LTRGLGAGANPEVGKKAAEESKEQIEEALKGADMVFVTAGMGGGTGTGAAPVIAQIAKDL 124 Query: 128 GVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFS 187 G LTVGVVT+PF FEG +R A GI A++E VDTLIVIPN + I + T +AF Sbjct: 125 GALTVGVVTRPFTFEGRKRQLQAAGGISAMKEAVDTLIVIPNDRILEIVDKNTPMLEAFR 184 Query: 188 MADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAA 247 AD VL GV I+DL+ GLINLDFADV+++M N G A+MG G A+G R +AA+ A Sbjct: 185 EADNVLRQGVQGISDLIATPGLINLDFADVKTIMSNKGSALMGIGIATGENRAAEAAKKA 244 Query: 248 VANPLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALE 307 +++PLL+ A++ G+QG+L++ITGG++L+L+EV EAA + D + N+I G+ +E L+ Sbjct: 245 ISSPLLE-AAIDGAQGVLMNITGGTNLSLYEVQEAADIVASASDQDVNMIFGSVINENLK 303 Query: 308 GVIRVSVVATGIENRLHRDGDDNRDSSLTTHESLKNAKFLNLSSPKLPVEDSHVMHHS 365 I V+V+ATG + R S + ++ + + + P + + V H+ Sbjct: 304 DEIVVTVIATGFIEQEKDVTKPQRPSLNQSIKTHNQSVPKRDAKREEPQQQNTVSRHT 361 Score = 30.5 bits (68), Expect = 0.99 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 440 HENIASEEDSVHMKSESTVSYLRERNPSISEESIDDFCVQSKPTVKCEEDKLEIPAFLRR 499 +++ + +S T + + + EE S+ T + +D L+IP FLR Sbjct: 319 EKDVTKPQRPSLNQSIKTHNQSVPKRDAKREEPQQQN-TVSRHTSQPADDTLDIPTFLRN 377 Query: 500 Q 500 + Sbjct: 378 R 378 >2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Length = 338 Score = 315 bits (807), Expect = 2e-86 Identities = 141/323 (43%), Positives = 191/323 (59%) Query: 8 MDITELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSG 67 M+ +I V GVGGGG NAVN M G++GV NTD Q L K IQ+G Sbjct: 1 MEEFVNPCKIKVIGVGGGGSNAVNRMYEDGIEGVELYAINTDVQHLSTLKVPNKIQIGEK 60 Query: 68 ITEGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNK 127 +T GLGAG+ PEVG AA E ID+I E+L T M F++AG+GGGTGTGAAP+IAK A+ Sbjct: 61 VTRGLGAGAKPEVGEEAALEDIDKIKEILRDTDMVFISAGLGGGTGTGAAPVIAKTAKEM 120 Query: 128 GVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFS 187 G+LTV V T PF FEG R+M A G+E L+E+ D IVI N + ++N T DAF Sbjct: 121 GILTVAVATLPFRFEGPRKMEKALKGLEKLKESSDAYIVIHNDKIKELSNRTLTIKDAFK 180 Query: 188 MADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAA 247 D VL V IT +++ +IN+DFADVR+ + G +++G GE G + A E A Sbjct: 181 EVDSVLSKAVRGITSIVVTPAVINVDFADVRTTLEEGGLSIIGMGEGRGDEKADIAVEKA 240 Query: 248 VANPLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALE 307 V +PLL+ +++G++ LL++I D+ VDE RI +V EA II GA + + Sbjct: 241 VTSPLLEGNTIEGARRLLVTIWTSEDIPYDIVDEVMERIHSKVHPEAEIIFGAVLEPQEQ 300 Query: 308 GVIRVSVVATGIENRLHRDGDDN 330 IRV++VAT + G+ Sbjct: 301 DFIRVAIVATDFPEEKFQVGEKE 323 >1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Length = 382 Score = 308 bits (789), Expect = 2e-84 Identities = 175/366 (47%), Positives = 233/366 (63%), Gaps = 3/366 (0%) Query: 15 PRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGA 74 I V G+GGGG NAVN M+ GL+GV F+ NTDAQAL+MS A + +G T GLGA Sbjct: 12 AVIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQALLMSDADVKLDVGRDSTRGLGA 71 Query: 75 GSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGV 134 G+ PEVGR AAE+ DEI E+L M FVTAG GGGTGTG AP++A IAR G LTVGV Sbjct: 72 GADPEVGRKAAEDAKDEIEELLRGADMVFVTAGEGGGTGTGGAPVVASIARKLGALTVGV 131 Query: 135 VTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLY 194 VT+PF FEG RR AE+GI AL+E+ DTLIVIPN L ++ + + DAF AD+VL Sbjct: 132 VTRPFSFEGKRRSNQAENGIAALRESCDTLIVIPNDRLLQMGDAAVSLMDAFRSADEVLL 191 Query: 195 SGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVANPLLD 254 +GV ITDL+ GLIN+DFADV+ +M G A+MG G A G GR ++AAE A+ +PLL+ Sbjct: 192 NGVQGITDLITTPGLINVDFADVKGIMSGAGTALMGIGSARGEGRSLKAAEIAINSPLLE 251 Query: 255 EASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALEGVIRVSV 314 ASM+G+QG+L+SI GGSDL LFE++EAA+ +++ +ANII G D++L +RV+V Sbjct: 252 -ASMEGAQGVLMSIAGGSDLGLFEINEAASLVQDAAHPDANIIFGTVIDDSLGDEVRVTV 310 Query: 315 VATGIENRLHRDGDDNRDSSLTTHESLKNAKFLNLSSPKLPVEDSHVMHHSVIAENAHCT 374 +A G + G +++AK L+S D+ + Sbjct: 311 IAAGFDV--SGPGRKPVMGETGGAHRIESAKAGKLTSTLFEPVDAVSVPLHTNGATLSIG 368 Query: 375 DNQEDL 380 + +D+ Sbjct: 369 GDDDDV 374 Score = 29.7 bits (66), Expect = 1.6 Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 1/75 (1%) Query: 426 VMALIKRIAHSFGLHENIASEEDSVHMKSESTVSYLRERNP-SISEESIDDFCVQSKPTV 484 V + S + + E H + L + S+ + ++ Sbjct: 308 VTVIAAGFDVSGPGRKPVMGETGGAHRIESAKAGKLTSTLFEPVDAVSVPLHTNGATLSI 367 Query: 485 KCEEDKLEIPAFLRR 499 ++D +++P F+RR Sbjct: 368 GGDDDDVDVPPFMRR 382 >3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A Length = 427 Score = 188 bits (479), Expect = 2e-48 Identities = 44/371 (11%), Positives = 92/371 (24%), Gaps = 56/371 (15%) Query: 5 NANMDITELKPRITVFGVGGGGGNAVNNMV----SSGLQGVNFVVANTDAQALM-MSKAK 59 + N + ++ R V G G G + S+G + N +M + Sbjct: 33 STNHSVNDISIRWGVIGAGQKGNKEADLFAGYKFSNGTTCYPTLAVNFAESDMMHLQNII 92 Query: 60 QIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEMLDK------------------THM 101 + ++ GA P V + + Sbjct: 93 KEDRIH--FDGLKGAARTPSVVTDLFDPETNPNANGYLDKLAQELGRKFTNEEGEVIVDQ 150 Query: 102 CFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQET- 160 + G GGG GTG ++ ++ R + + + A + + E Sbjct: 151 FLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPSGDPDEINNALVLLSEIDEFM 210 Query: 161 --------------VDTLIVIPNQNLFRIANDKT---TFADAFSMADQVLYSGVSCITDL 203 + +IV N + RI + + + +V V Sbjct: 211 REQDRLFGNSDIKPLANVIVNDNTQMQRIIESQKGTKDLKNRYVNWKEVANDNVVSTLHE 270 Query: 204 M------IKEGLINLDFADVRSVMRNMGR-AMMGTGEASGHGRG---IQAAEAAVANPLL 253 + + D +D+ ++ GR +G + + Sbjct: 271 INIIPENYGSDNVTYDPSDLIKLLSIPGRFLTIGKARIAKFDLHSLENSIKRSLDEGFFS 330 Query: 254 DEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSE---ANIILGATFDEALEGVI 310 E + + + S+ F+ RIR + I Sbjct: 331 AEHQFETATMYGGFVLRPSNADFFKDVNTENRIRNTLGEYKRLDEIAGKFGDPIWDNEYA 390 Query: 311 RVSVVATGIEN 321 + G+ Sbjct: 391 VCYTIFAGMTM 401 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 68.0 bits (166), Expect = 5e-12 Identities = 91/525 (17%), Positives = 146/525 (27%), Gaps = 226/525 (43%) Query: 74 AGSHPEVGRAAAEE------CIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNK 127 G +V E ++I H + A + T + + K Sbjct: 77 VGQFDQVLNLCLTEFENCYLEGNDI-------HA--LAAKLLQENDT-------TLVKTK 120 Query: 128 GVL-----TVGVVTKPF-HFEGSRRMRVAESG-----------------IEALQET---- 160 ++ + +PF S R G E L++ Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180 Query: 161 ---VDTLIVIPNQNLFRIANDKTTFADAFS-----MA-----------DQVLYSGVSC-- 199 V LI + L + F+ + D +L +SC Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240 Query: 200 ITDLMIKEGLINLDFADVRSVMRNMG------RAMMGTGEASGHGRGIQAAEAAVAN--- 250 I G+I L A + +G R+ + G A+GH +G+ A A+A Sbjct: 241 I-------GVIQL--AHYVVTAKLLGFTPGELRSYL-KG-ATGHSQGLVTA-VAIAETDS 288 Query: 251 -PLLDEASMKGSQGLLISITGGSDLTLF----EVDEAA--TRIREEV--DSEANIILGAT 301 + K +IT LF EA T + + DS N Sbjct: 289 WESFFVSVRK-------AIT-----VLFFIGVRCYEAYPNTSLPPSILEDSLEN---N-- 331 Query: 302 FDEALEGVIR--VSVVATGIENRLHRDGDDNRDSSLTTHESLKNAKFLNLSSPKLPVEDS 359 EGV +S+ + + + ++N ++ LP Sbjct: 332 -----EGVPSPMLSI----------------SNLTQEQVQ-----DYVNKTNSHLP-AGK 364 Query: 360 HVMHHSVIAENAHCTDNQEDLNNQENSLVGDQNQELFLEEDVV---PES----------- 405 V I+ L N G +N VV P+S Sbjct: 365 QV----EIS-----------LVN------GAKN---L----VVSGPPQSLYGLNLTLRKA 396 Query: 406 SAPHRL-ISRQRHSDSVEERGVMALIK-RIAHSFGLHENIASEEDSVHMKSESTVSYLRE 463 AP L SR S ER K + ++ F L +AS H S L Sbjct: 397 KAPSGLDQSRIPFS----ER------KLKFSNRF-L--PVAS---PFH--S----HLLVP 434 Query: 464 RNPSISEESIDDFCVQSKPTVKCEEDKLEIPAF-------LRRQS 501 + I++ D + V ++IP + LR S Sbjct: 435 ASDLINK----DLVKNN---VSFNAKDIQIPVYDTFDGSDLRVLS 472 Score = 42.2 bits (99), Expect = 3e-04 Identities = 55/244 (22%), Positives = 104/244 (42%), Gaps = 62/244 (25%) Query: 134 VVTKP----FHFEGSRRMRVAESGIEALQET-VDTLIVIPNQNLFRIANDKTTFADAFSM 188 V+ P HF G + R+ E+ + ET VD + + +F+ N+ +T +++ Sbjct: 1665 VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG--KLKTEKIFKEINEHST---SYTF 1719 Query: 189 -ADQVLYSGVS----CITDLMIKEGLINLDFADVRSVMRNMGRAMM-GTGEASGHGRGIQ 242 +++ L S +T LM K F D++S + ++ +GH G Sbjct: 1720 RSEKGLLSATQFTQPALT-LMEKAA-----FEDLKS------KGLIPADATFAGHSLGEY 1767 Query: 243 AAEAAVANPLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVD-SEANII---- 297 AA A++A+ + E+ L+ + +T+ + A R+E+ S +I Sbjct: 1768 AALASLADVMSIES--------LVEVVFYRGMTM----QVAVP-RDELGRSNYGMIAINP 1814 Query: 298 --LGATFD-EALEGVIR---------VSVVATGIENRLHRDGDDNRDSSLTTHESLKNAK 345 + A+F EAL+ V+ V +V +EN+ + D R +L T ++ N Sbjct: 1815 GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLR--ALDTVTNVLN-- 1870 Query: 346 FLNL 349 F+ L Sbjct: 1871 FIKL 1874 Score = 37.6 bits (87), Expect = 0.007 Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 27/75 (36%) Query: 7 NMDITELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGS 66 T I FG GG +SGL GV N D + ++I G+ Sbjct: 495 QFKATH----ILDFGPGG----------ASGL-GV-LTHRNKDGTGV------RVIVAGT 532 Query: 67 GITEGLGAGSHPEVG 81 L + G Sbjct: 533 -----LDINPDDDYG 542 Score = 33.8 bits (77), Expect = 0.083 Identities = 57/352 (16%), Positives = 106/352 (30%), Gaps = 141/352 (40%) Query: 254 DEASMKGSQ-GLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEA-LEGV-I 310 DE + + L+ G V+ + ++V N+ L F+ LEG I Sbjct: 52 DEPT---TPAELVGKFLG---YVSSLVEPSKVGQFDQV---LNLCLTE-FENCYLEGNDI 101 Query: 311 RVSVVATGIENRLHRDGDDNRDSSLTTHESLKN---AKF-LNLSSPKLPVEDSHVMHHSV 366 ++ A +L +N + + T E +KN A+ K + + +V Sbjct: 102 H-ALAA-----KLL---QENDTTLVKTKELIKNYITARIMAKRPFDKKS---NSALFRAV 149 Query: 367 IAENAH---------CTDN--QE--DLNNQENSLVGD---QNQELFLEE----------- 399 NA TD+ +E DL + LVGD + E E Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209 Query: 400 ----DVV-----PES--------SAP------------HRLIS-----------RQR--- 416 +++ P + S P H +++ R Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269 Query: 417 ---HSDSVEERGVMALIKRIAHSFGLHENIASEEDSVHMKSESTVSYL-----RERN--- 465 HS + V A+ IA +S + ++ L R Sbjct: 270 ATGHSQGL----VTAVA--IA--------ETDSWESFFVSVRKAITVLFFIGVRCYEAYP 315 Query: 466 -----PSISEESIDDFCVQSKPT----VK-CEEDKLE--IPAF---LRRQSH 502 PSI E+S++ + P+ + +++++ + L Sbjct: 316 NTSLPPSILEDSLE--NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365 >2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Score = 48.4 bits (115), Expect = 4e-06 Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 7/148 (4%) Query: 74 AGSHPEVGRAAAEECIDEITEMLDKTHMC---FVTAGMGGGTGTG----AAPIIAKIARN 126 A + G ++ ++ I ++KT +T +GGG+G+G + + Sbjct: 103 ARGYNVEGEKVIDQIMNVIDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPK 162 Query: 127 KGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAF 186 K + T VV P + + A ++ + + D +++ N+ LFRIA K + + Sbjct: 163 KRIFTFSVVPSPLISDSAVEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKLNRSPNY 222 Query: 187 SMADQVLYSGVSCITDLMIKEGLINLDF 214 + ++ VS +T + G +N D Sbjct: 223 MDLNNIIALIVSSVTASLRFPGKLNTDL 250 >3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Score = 38.0 bits (88), Expect = 0.005 Identities = 35/178 (19%), Positives = 70/178 (39%), Gaps = 29/178 (16%) Query: 70 EGLGAGSHPEVGRAAAEECIDEITEMLDK-THMC------FVTAGMGGGTGTG-AAPIIA 121 G GAG++ G + E+ ++I +++D+ + + GGTG+G + ++ Sbjct: 96 HGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLE 155 Query: 122 KIA---RNKGVLTVGVVTKPFHFEGSRRMRVAES-----GIEALQETVDTLIVIPNQNLF 173 ++ K V T V V + ++ L + D L+V+ N L Sbjct: 156 RLNDRYPKKLVQTYSVFPNQDEMSDV----VVQPYNSLLTLKRLTQNADCLVVLDNTALN 211 Query: 174 RIANDK-----TTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGR 226 RIA D+ +F+ + ++ S T + G +N D + + + R Sbjct: 212 RIATDRLHIQNPSFSQINQLVSTIM----SASTTTLRYPGYMNNDLIGLIASLIPTPR 265 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 36.7 bits (84), Expect = 0.012 Identities = 60/273 (21%), Positives = 107/273 (39%), Gaps = 85/273 (31%) Query: 237 HGRGIQAAEAAV-----ANPLLDEASMKGS-----------QGLL-----ISITGGSDLT 275 +G AA A V AN LD +K +GLL I +TG +++ Sbjct: 770 NGNSADAAYAQVEIQPRANIQLDFPELKPYKQVKQIAPAELEGLLDLERVIVVTGFAEVG 829 Query: 276 LFEVDEAATRIREEVDSEANIILGATFDE-ALEGVIRVSVVATGIENRLHRDGDDNRDSS 334 + + R R E+++ F E +LEG + ++ + I + +G+ Sbjct: 830 PW----GSARTRWEMEA---------FGEFSLEGCVEMAWIMGFIS---YHNGN------ 867 Query: 335 LTTHESLKNAKFLNL--SSPKLPVEDSHVM--HHSVIAENAHCTDNQEDLNNQENSLVGD 390 LK + S K PV+D V + + I E++ + +L N N + Sbjct: 868 ------LKGRPYTGWVDSKTKEPVDDKDVKAKYETSILEHSGIRLIEPELFNGYNPEKKE 921 Query: 391 QNQELFLEEDVVP-ESSAPHRLISRQRHSDSVE-----ERG--VMALIK----------- 431 QE+ +EED+ P E+S + +H D V+ E G + L+K Sbjct: 922 MIQEVIVEEDLEPFEASKETAEQFKHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKALR 981 Query: 432 --RI----------AHSFGLHENIASEEDSVHM 452 R+ A ++G+ ++I S+ D + + Sbjct: 982 FDRLVAGQIPTGWNAKTYGISDDIISQVDPITL 1014 Score = 32.9 bits (74), Expect = 0.19 Identities = 58/231 (25%), Positives = 90/231 (38%), Gaps = 44/231 (19%) Query: 112 TGTGAAPIIAKIARN--KGVLTVGVVTKPFHFEGSRRMR--VAESGIEALQETVDTLIVI 167 TG G I A++ + +G V V T F + + + A+ G + TLIV+ Sbjct: 482 TGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKG-----STLIVV 536 Query: 168 PNQNLFRIANDKTTFADAFSMADQVLYSGVSCITDLMI------KEGLINLDFADVRS-- 219 P F + + A + D G+ D +I ++G I L+ D +S Sbjct: 537 P----FNQGSKQDVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQG-IELEHIDSKSEF 591 Query: 220 ----VMRNMGRAMMGTGEASGHGRGIQAAEAAVANPLLDEASMKGSQGLLISITGGSDLT 275 ++ N+ R MMG + RGI+ A V P+ G G+ S + S T Sbjct: 592 AHRIMLTNILR-MMGCVKKQKSARGIETRPAQVILPMSPNHGTFGGDGMY-SESKLSLET 649 Query: 276 LFEVDEAATRIREEVDSEAN------IILGATFDEALEGVIRVSVVATGIE 320 LF R +S AN I+G T L +++A GIE Sbjct: 650 LFN--------RWHSESWANQLTVCGAIIGWTRGTGLMSA--NNIIAEGIE 690 >1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase, multiple conformers; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A Length = 266 Score = 32.8 bits (74), Expect = 0.21 Identities = 11/51 (21%), Positives = 19/51 (37%) Query: 79 EVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGV 129 +VG+ AA ++ I FV GGT + ++ + V Sbjct: 11 QVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQV 61 >2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein complex, cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Score = 32.7 bits (74), Expect = 0.22 Identities = 32/154 (20%), Positives = 56/154 (36%), Gaps = 24/154 (15%) Query: 85 AEECIDEITEMLDKTHMCFVTAGMGGGTGTG-AAPIIAKIA---RNKGVLTVGVVTKPFH 140 +D + D V +GGGTG+G A +I + VL+ V+ P Sbjct: 120 VMSRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSP-- 177 Query: 141 FEGSRRMRVAES-----GIEALQETVDTLIVIPNQNLFRIA-----NDKTTFADAFSMAD 190 V E + L+ + D ++ N+ LF +A + T D + Sbjct: 178 ---QVSSVVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLIT 234 Query: 191 QVLYSGVSCITDLMIKEGLINLDFADVRSVMRNM 224 + L + IT M G + +R ++ N+ Sbjct: 235 EAL----AGITASMRFSGFLT-VEISLRELLTNL 263 >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 Score = 32.2 bits (72), Expect = 0.25 Identities = 26/165 (15%), Positives = 46/165 (27%), Gaps = 12/165 (7%) Query: 94 EMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESG 153 ++ + V+AG P GV+ V + G Sbjct: 283 YAMEHGVVMVVSAGNNTSDSHHQYPAGYP-----GVIQVAALDYYGGTFRVAGFSSRSDG 337 Query: 154 IEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLYSGVSCITDL------MIKE 207 + V L +P ++ A + Y G S ++ + Sbjct: 338 VSVGAPGVTILSTVPGEDSI-GYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQ 396 Query: 208 GLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVANPL 252 N +R ++ N G G G G+ +AA+ PL Sbjct: 397 KFPNAKPWQIRKLLENTAFDFNGNGWDHDTGYGLVKLDAALQGPL 441 >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 Score = 31.4 bits (70), Expect = 0.44 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 7/45 (15%) Query: 248 VANPLLDEASMKG--SQGLLISITGGSDLTLFEVDEAA---TRIR 287 VAN L+ ++G SQG+L++ G + L D+ ++R Sbjct: 680 VAN--LEPKKLRGIGSQGMLLAADDGERVALLMPDKEVKLGAKVR 722 >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Score = 30.6 bits (68), Expect = 0.92 Identities = 42/238 (17%), Positives = 70/238 (29%), Gaps = 30/238 (12%) Query: 270 GGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALEGVIRVSVVATGIENRLHRDGDD 329 G SD L E E E + E A I + I +RL ++ Sbjct: 1 GPSDDDLLE-SEDDYGSEEALSEENVHEASANPQPEDFHGIDI-----VINHRLKTSLEE 54 Query: 330 NRDSSLTTHESLKNA-------KFLNLS---SPKLPVEDSHVMHHSVIAENAHCTDNQED 379 + T + K+ + S + E + +N ED Sbjct: 55 GKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIED 114 Query: 380 LNNQENSLVGDQNQELF-----LEEDVVPESSAPHRLISRQRHSDSVEERGVMALIK-RI 433 + + V ++ E+ D E P R+I QR S + L+K R Sbjct: 115 QQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWR- 173 Query: 434 AHSFGLHENIA---SEEDSVHMKSESTVSYLRERNPSISEESIDDFCVQSKPTVKCEE 488 L+ + A + D V + E + N I + ++ Q K Sbjct: 174 ----RLNYDEATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSV 227 >3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME disease, non-hodgkin lymphomas; 2.20A {Borrelia burgdorferi B31} Length = 289 Score = 30.0 bits (67), Expect = 1.3 Identities = 9/54 (16%), Positives = 22/54 (40%) Query: 76 SHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGV 129 ++ ++ + AA +I E F+ G + G + ++ +NK + Sbjct: 29 TYEDISKWAANHVAQKINEFSPTKENPFILGLPTGSSPIGMYKNLIELNKNKKI 82 >1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1 Length = 289 Score = 30.0 bits (67), Expect = 1.4 Identities = 8/54 (14%), Positives = 17/54 (31%) Query: 76 SHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGV 129 + + AA+ + I + F G T G + + +N + Sbjct: 8 HYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDL 61 >1vjt_A Alpha-glucosidase; TM0752, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics, hydrolase; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Length = 483 Score = 29.7 bits (66), Expect = 1.4 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 8/70 (11%) Query: 271 GSDLTLFEVDEA--------ATRIREEVDSEANIILGATFDEALEGVIRVSVVATGIENR 322 + + + +V E A + EE++S I+ ++ DEA++G + A + R Sbjct: 43 DTHIYMMDVHERRLNASYILARKYVEELNSPVKIVKTSSLDEAIDGADFIINTAYPYDPR 102 Query: 323 LHRDGDDNRD 332 H G D Sbjct: 103 YHDSGSQRWD 112 >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} Length = 392 Score = 29.3 bits (65), Expect = 2.0 Identities = 21/153 (13%), Positives = 44/153 (28%), Gaps = 9/153 (5%) Query: 182 FADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGI 241 + + + + + + ++ L FAD ++ +G + Sbjct: 54 WGEVWCNFPACGAEHRARLVETVLAPLLTARAFADPAQAFAHLEARTAVLAIQTGEPGPL 113 Query: 242 QAAEAAVANPLLDEASMKGSQGLLISITGGSD--------LTLFEVDEAATRIREEVDSE 293 A A + L D A+ + Q L + G D + ++ R E Sbjct: 114 AQAIAGLDIALCDLAARRAGQPLWAWLGGSGDRIGVYASGINPENPEDVVARKAAEGYRA 173 Query: 294 ANIILGATFDEALEGVIRVSVVATGIENRLHRD 326 + +G + + V G L D Sbjct: 174 FKLKVGFDDARDVRNALHVR-ELLGAATPLMAD 205 >2wam_A RV2714, conserved hypothetical alanine and leucine rich protein; unknown function; 2.60A {Mycobacterium tuberculosis} Length = 351 Score = 28.4 bits (63), Expect = 3.4 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 7/93 (7%) Query: 206 KEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVANP--LLDEASMKGSQG 263 +E + + + + E G + V P L +Q Sbjct: 200 RELISDFQPSISEIQVPGS---ASNLLEYRMAQHGHEVVGFTVHVPHYLTQTDYPAAAQA 256 Query: 264 LL--ISITGGSDLTLFEVDEAATRIREEVDSEA 294 LL ++ TG L L + EAA ++ ++D + Sbjct: 257 LLEQVAKTGSLQLPLAVLAEAAAEVQAKIDEQV 289 >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Length = 480 Score = 28.5 bits (63), Expect = 4.1 Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 9/70 (12%) Query: 271 GSDLTLFEVDEA--------ATRIREEVDSEANIILGATFDEALEGVIRVSVVATGIENR 322 GS +TL ++DE A + EEV ++ D+ + + + Sbjct: 32 GSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDA-DFVINTAMVGGH 90 Query: 323 LHRDGDDNRD 332 + + Sbjct: 91 TYLEKVRQIG 100 >2e52_A Type II restriction enzyme HINDIII; type II restriction enzyme HINDIII(E.C.3.1.21.4)/DNA; HET: DNA; 2.00A {Haemophilus influenzae rd KW20} PDB: 3a4k_A* Length = 300 Score = 28.0 bits (62), Expect = 4.5 Identities = 10/36 (27%), Positives = 20/36 (55%) Query: 287 REEVDSEANIILGATFDEALEGVIRVSVVATGIENR 322 +E + NII T +EA+E +++ +++ IE Sbjct: 250 KEYWKKQINIIKNFTREEAIEALLKDINMSSKIETI 285 >1tvk_B Tubulin beta chain; epothilone, taxol, ligand interactions, cell cycle, structural protein; HET: GDP GTP EP; 2.89A {Bos taurus} SCOP: c.32.1.1 d.79.2.1 PDB: 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* 2hxf_B* 2hxh_B* 2p4n_B* 2wbe_B* 3dco_B* 3edl_B* 1z2b_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* Length = 427 Score = 28.0 bits (62), Expect = 4.6 Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 17/118 (14%) Query: 74 AGSHPEVGRAAAEECIDEI---TEMLDKTHMCFVTAGMGGGTGTG-AAPIIAKIA---RN 126 A H G + +D + +E D +T +GGGTG+G +I+KI + Sbjct: 102 AKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPD 161 Query: 127 KGVLTVGVVTKPFHFEGSRRMRVAES-----GIEALQETVDTLIVIPNQNLFRIANDK 179 + + T VV P V E + L E D I N+ L+ I Sbjct: 162 RIMNTFSVVPSP-----KVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRT 214 >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} Length = 327 Score = 27.8 bits (61), Expect = 5.9 Identities = 9/69 (13%), Positives = 25/69 (36%) Query: 187 SMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEA 246 +MA + ++ I +L +L ++ + + + T +A G+G Sbjct: 250 AMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDLVE 309 Query: 247 AVANPLLDE 255 + ++ Sbjct: 310 RITGQFTEK 318 >2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A Length = 652 Score = 27.6 bits (61), Expect = 6.9 Identities = 7/49 (14%), Positives = 12/49 (24%) Query: 417 HSDSVEERGVMALIKRIAHSFGLHENIASEEDSVHMKSESTVSYLRERN 465 + EE+ + A + GL + D V Sbjct: 402 VDEEREEQYTALYCMQAAEAVGLEGKLCILFDEFRFDDNGHVVDSDGVR 450 >1ec7_A Glucarate dehydratase; lyase; 1.90A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 PDB: 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 1jct_A* 1bqg_A Length = 446 Score = 27.4 bits (60), Expect = 7.7 Identities = 6/55 (10%), Positives = 16/55 (29%), Gaps = 5/55 (9%) Query: 205 IKEGLINLDFADVRSVMRNMGRAM-----MGTGEASGHGRGIQAAEAAVANPLLD 254 ++ + ++V+ + G G + R + +LD Sbjct: 68 AIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLD 122 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.314 0.131 0.361 Gapped Lambda K H 0.267 0.0479 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 4,040,487 Number of extensions: 187941 Number of successful extensions: 652 Number of sequences better than 10.0: 1 Number of HSP's gapped: 633 Number of HSP's successfully gapped: 42 Length of query: 502 Length of database: 5,693,230 Length adjustment: 96 Effective length of query: 406 Effective length of database: 3,365,806 Effective search space: 1366517236 Effective search space used: 1366517236 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 59 (27.1 bits)