RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781176|ref|YP_003065589.1| cell division protein FtsZ
[Candidatus Liberibacter asiaticus str. psy62]
(502 letters)
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division
inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas
aeruginosa} SCOP: c.32.1.1 d.79.2.1
Length = 320
Score = 388 bits (999), Expect = e-108
Identities = 152/316 (48%), Positives = 213/316 (67%)
Query: 8 MDITELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSG 67
+D I V GV NAVN+M + ++GV F+ ANTDAQAL A+ ++QLG G
Sbjct: 5 VDNIAQTAVIKVIGVXXXXXNAVNHMAKNNVEGVEFICANTDAQALKNIAARTVLQLGPG 64
Query: 68 ITEGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNK 127
+T+GLGAG++PEVGR AA E + I+E+L+ M F+T GMGGGTGTGAAPIIA++A+
Sbjct: 65 VTKGLGAGANPEVGRQAALEDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEM 124
Query: 128 GVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFS 187
G+LTV VVT+PF FEG +RM++A+ GI AL E+VD+LI IPN+ L I + AF+
Sbjct: 125 GILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTILGKDASLLAAFA 184
Query: 188 MADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAA 247
AD VL V I+D++ + G+IN+DFADV++VM MG AMMGTG ASG R +A EAA
Sbjct: 185 KADDVLAGAVRGISDIIKRPGMINVDFADVKTVMSEMGMAMMGTGCASGPNRAREATEAA 244
Query: 248 VANPLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALE 307
+ NPLL++ +++G++G+L++IT G DL+L E + I + A + +G D +
Sbjct: 245 IRNPLLEDVNLQGARGILVNITAGPDLSLGEYSDVGNIIEQFASEHATVKVGTVIDADMR 304
Query: 308 GVIRVSVVATGIENRL 323
+ V+VVATG+ RL
Sbjct: 305 DELHVTVVATGLGARL 320
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin
homolog, GTPase, septation, cell cycle, GTP-binding;
HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A*
1fsz_A* 1w5e_A*
Length = 364
Score = 321 bits (825), Expect = 2e-88
Identities = 139/313 (44%), Positives = 198/313 (63%), Gaps = 2/313 (0%)
Query: 10 ITELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGIT 69
+ + K +ITV G GG G N + + G++G V NTDAQ L+ +KA + I +G +T
Sbjct: 33 LQQTKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKADKKILIGKKLT 92
Query: 70 EGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGV 129
GLGAG +P++G AA+E +EI + + M F+T G+GGGTGTG+AP++A+I++ G
Sbjct: 93 RGLGAGGNPKIGEEAAKESAEEIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGA 152
Query: 130 LTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMA 189
LTV VVT PF EG RM+ A G+E L++ DTL+VIPN+ LF I + AF +A
Sbjct: 153 LTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIVPNM-PLKLAFKVA 211
Query: 190 DQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVA 249
D+VL + V + +L+ K+GLIN+DFADV++VM N G AM+G GE+ R +A A+
Sbjct: 212 DEVLINAVKGLVELITKDGLINVDFADVKAVMNNGGLAMIGIGESDSEKRAKEAVSMALN 271
Query: 250 NPLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALEGV 309
+PLLD + G+ G LI + G DLTL E E + +D A II GAT DE LE
Sbjct: 272 SPLLD-VDIDGATGALIHVMGPEDLTLEEAREVVATVSSRLDPNATIIWGATIDENLENT 330
Query: 310 IRVSVVATGIENR 322
+RV +V TG+++R
Sbjct: 331 VRVLLVITGVQSR 343
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding,
multigene family, septation, tubulin, filament, Z-ring,
GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga
maritima} SCOP: c.32.1.1 d.79.2.1
Length = 353
Score = 319 bits (819), Expect = 9e-88
Identities = 134/311 (43%), Positives = 190/311 (61%), Gaps = 4/311 (1%)
Query: 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLG 73
+I V GVGG G NA+N M+ G+ GV FV NTD Q L S A IQ+G IT GLG
Sbjct: 21 NLKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASNADVKIQIGENITRGLG 80
Query: 74 AGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVG 133
AG PE+G AA E ++I E+L THM F+TAG GGGTGTGA+P+IAKIA+ G+LTV
Sbjct: 81 AGGRPEIGEQAALESEEKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTVA 140
Query: 134 VVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVL 193
+VT PF+FEG R++ A G++ L++ VDTLI I N L DAF AD+ L
Sbjct: 141 IVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKISNNKLMEELPRDVKIKDAFLKADETL 200
Query: 194 YSGVSCITDLMIKEGLINL--DFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVANP 251
+ GV I++L+ K G I L FA + SVM++ G A++G G G R +AA+ A+ +
Sbjct: 201 HQGVKGISELITKRGYIRLTSRFARIESVMKDAGAAILGIGVGKGEHRAREAAKKAMESK 260
Query: 252 LLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEAL-EGVI 310
L++ ++ + ++ +IT S++ + EV EAA IR+ +A++ G FD+ + + I
Sbjct: 261 LIE-HPVENASSIVFNITAPSNIRMEEVHEAAMIIRQNSSEDADVKFGLIFDDEVPDDEI 319
Query: 311 RVSVVATGIEN 321
RV +AT +
Sbjct: 320 RVIFIATRFPD 330
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein,
tubulin homolog, nucleotide-binding, GTPase, septation,
cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa}
SCOP: c.32.1.1 d.79.2.1
Length = 394
Score = 316 bits (811), Expect = 7e-87
Identities = 158/377 (41%), Positives = 228/377 (60%), Gaps = 5/377 (1%)
Query: 8 MDITELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSG 67
+D I V GV NAVN+M + ++GV F+ ANTDAQAL A+ ++QLG G
Sbjct: 5 VDNIAQTAVIKVIGVXXXXXNAVNHMAKNNVEGVEFICANTDAQALKNIAARTVLQLGPG 64
Query: 68 ITEGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNK 127
+T+GLGAG++PEVGR AA E + I+E+L+ M F+T GMGGGTGTGAAPIIA++A+
Sbjct: 65 VTKGLGAGANPEVGRQAALEDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEM 124
Query: 128 GVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFS 187
G+LTV VVT+PF FEG +RM++A+ GI AL E+VD+LI IPN+ L I + AF+
Sbjct: 125 GILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTILGKDASLLAAFA 184
Query: 188 MADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAA 247
AD VL V I+D++ + G+IN+DFADV++VM MG AMMGTG ASG R +A EAA
Sbjct: 185 KADDVLAGAVRGISDIIKRPGMINVDFADVKTVMSEMGMAMMGTGCASGPNRAREATEAA 244
Query: 248 VANPLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALE 307
+ NPLL++ +++G++G+L++IT G DL+L E + I + A + +G D +
Sbjct: 245 IRNPLLEDVNLQGARGILVNITAGPDLSLGEYSDVGNIIEQFASEHATVKVGTVIDADMR 304
Query: 308 GVIRVSVVATGIENRLHR-----DGDDNRDSSLTTHESLKNAKFLNLSSPKLPVEDSHVM 362
+ V+VVATG+ RL + D ++ + + + +N P +
Sbjct: 305 DELHVTVVATGLGARLEKPVKVVDNTVQGSAAQAAAPAQREQQSVNYRDLDRPTVMRNQS 364
Query: 363 HHSVIAENAHCTDNQED 379
H S + D
Sbjct: 365 HGSAATAAKLNPQDDLD 381
Score = 33.2 bits (75), Expect = 0.13
Identities = 15/61 (24%), Positives = 25/61 (40%)
Query: 440 HENIASEEDSVHMKSESTVSYLRERNPSISEESIDDFCVQSKPTVKCEEDKLEIPAFLRR 499
+ A + +S +R + +S +K + + D L+IPAFLRR
Sbjct: 332 QGSAAQAAAPAQREQQSVNYRDLDRPTVMRNQSHGSAATAAKLNPQDDLDYLDIPAFLRR 391
Query: 500 Q 500
Q
Sbjct: 392 Q 392
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding,
septation, cytoplasm, B.subtilis, cell cycle; HET: CIT;
1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A*
2rhl_A* 2rho_A*
Length = 382
Score = 315 bits (808), Expect = 1e-86
Identities = 166/358 (46%), Positives = 235/358 (65%), Gaps = 1/358 (0%)
Query: 8 MDITELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSG 67
+ I V GVGGGG NAVN M+ + +QGV ++ NTDAQAL +SKA+ +Q+G+
Sbjct: 5 ETNIDGLASIKVIGVGGGGNNAVNRMIENEVQGVEYIAVNTDAQALNLSKAEVKMQIGAK 64
Query: 68 ITEGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNK 127
+T GLGAG++PEVG+ AAEE ++I E L M FVTAGMGGGTGTGAAP+IA+IA++
Sbjct: 65 LTRGLGAGANPEVGKKAAEESKEQIEEALKGADMVFVTAGMGGGTGTGAAPVIAQIAKDL 124
Query: 128 GVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFS 187
G LTVGVVT+PF FEG +R A GI A++E VDTLIVIPN + I + T +AF
Sbjct: 125 GALTVGVVTRPFTFEGRKRQLQAAGGISAMKEAVDTLIVIPNDRILEIVDKNTPMLEAFR 184
Query: 188 MADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAA 247
AD VL GV I+DL+ GLINLDFADV+++M N G A+MG G A+G R +AA+ A
Sbjct: 185 EADNVLRQGVQGISDLIATPGLINLDFADVKTIMSNKGSALMGIGIATGENRAAEAAKKA 244
Query: 248 VANPLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALE 307
+++PLL+ A++ G+QG+L++ITGG++L+L+EV EAA + D + N+I G+ +E L+
Sbjct: 245 ISSPLLE-AAIDGAQGVLMNITGGTNLSLYEVQEAADIVASASDQDVNMIFGSVINENLK 303
Query: 308 GVIRVSVVATGIENRLHRDGDDNRDSSLTTHESLKNAKFLNLSSPKLPVEDSHVMHHS 365
I V+V+ATG + R S + ++ + + + P + + V H+
Sbjct: 304 DEIVVTVIATGFIEQEKDVTKPQRPSLNQSIKTHNQSVPKRDAKREEPQQQNTVSRHT 361
Score = 30.5 bits (68), Expect = 0.99
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 440 HENIASEEDSVHMKSESTVSYLRERNPSISEESIDDFCVQSKPTVKCEEDKLEIPAFLRR 499
+++ + +S T + + + EE S+ T + +D L+IP FLR
Sbjct: 319 EKDVTKPQRPSLNQSIKTHNQSVPKRDAKREEPQQQN-TVSRHTSQPADDTLDIPTFLRN 377
Query: 500 Q 500
+
Sbjct: 378 R 378
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell
cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1*
Length = 338
Score = 315 bits (807), Expect = 2e-86
Identities = 141/323 (43%), Positives = 191/323 (59%)
Query: 8 MDITELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSG 67
M+ +I V GVGGGG NAVN M G++GV NTD Q L K IQ+G
Sbjct: 1 MEEFVNPCKIKVIGVGGGGSNAVNRMYEDGIEGVELYAINTDVQHLSTLKVPNKIQIGEK 60
Query: 68 ITEGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNK 127
+T GLGAG+ PEVG AA E ID+I E+L T M F++AG+GGGTGTGAAP+IAK A+
Sbjct: 61 VTRGLGAGAKPEVGEEAALEDIDKIKEILRDTDMVFISAGLGGGTGTGAAPVIAKTAKEM 120
Query: 128 GVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFS 187
G+LTV V T PF FEG R+M A G+E L+E+ D IVI N + ++N T DAF
Sbjct: 121 GILTVAVATLPFRFEGPRKMEKALKGLEKLKESSDAYIVIHNDKIKELSNRTLTIKDAFK 180
Query: 188 MADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAA 247
D VL V IT +++ +IN+DFADVR+ + G +++G GE G + A E A
Sbjct: 181 EVDSVLSKAVRGITSIVVTPAVINVDFADVRTTLEEGGLSIIGMGEGRGDEKADIAVEKA 240
Query: 248 VANPLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALE 307
V +PLL+ +++G++ LL++I D+ VDE RI +V EA II GA + +
Sbjct: 241 VTSPLLEGNTIEGARRLLVTIWTSEDIPYDIVDEVMERIHSKVHPEAEIIFGAVLEPQEQ 300
Query: 308 GVIRVSVVATGIENRLHRDGDDN 330
IRV++VAT + G+
Sbjct: 301 DFIRVAIVATDFPEEKFQVGEKE 323
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling
protein; HET: CIT; 1.86A {Mycobacterium tuberculosis}
SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A*
2q1x_A*
Length = 382
Score = 308 bits (789), Expect = 2e-84
Identities = 175/366 (47%), Positives = 233/366 (63%), Gaps = 3/366 (0%)
Query: 15 PRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGA 74
I V G+GGGG NAVN M+ GL+GV F+ NTDAQAL+MS A + +G T GLGA
Sbjct: 12 AVIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQALLMSDADVKLDVGRDSTRGLGA 71
Query: 75 GSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGV 134
G+ PEVGR AAE+ DEI E+L M FVTAG GGGTGTG AP++A IAR G LTVGV
Sbjct: 72 GADPEVGRKAAEDAKDEIEELLRGADMVFVTAGEGGGTGTGGAPVVASIARKLGALTVGV 131
Query: 135 VTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLY 194
VT+PF FEG RR AE+GI AL+E+ DTLIVIPN L ++ + + DAF AD+VL
Sbjct: 132 VTRPFSFEGKRRSNQAENGIAALRESCDTLIVIPNDRLLQMGDAAVSLMDAFRSADEVLL 191
Query: 195 SGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVANPLLD 254
+GV ITDL+ GLIN+DFADV+ +M G A+MG G A G GR ++AAE A+ +PLL+
Sbjct: 192 NGVQGITDLITTPGLINVDFADVKGIMSGAGTALMGIGSARGEGRSLKAAEIAINSPLLE 251
Query: 255 EASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALEGVIRVSV 314
ASM+G+QG+L+SI GGSDL LFE++EAA+ +++ +ANII G D++L +RV+V
Sbjct: 252 -ASMEGAQGVLMSIAGGSDLGLFEINEAASLVQDAAHPDANIIFGTVIDDSLGDEVRVTV 310
Query: 315 VATGIENRLHRDGDDNRDSSLTTHESLKNAKFLNLSSPKLPVEDSHVMHHSVIAENAHCT 374
+A G + G +++AK L+S D+ +
Sbjct: 311 IAAGFDV--SGPGRKPVMGETGGAHRIESAKAGKLTSTLFEPVDAVSVPLHTNGATLSIG 368
Query: 375 DNQEDL 380
+ +D+
Sbjct: 369 GDDDDV 374
Score = 29.7 bits (66), Expect = 1.6
Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 426 VMALIKRIAHSFGLHENIASEEDSVHMKSESTVSYLRERNP-SISEESIDDFCVQSKPTV 484
V + S + + E H + L + S+ + ++
Sbjct: 308 VTVIAAGFDVSGPGRKPVMGETGGAHRIESAKAGKLTSTLFEPVDAVSVPLHTNGATLSI 367
Query: 485 KCEEDKLEIPAFLRR 499
++D +++P F+RR
Sbjct: 368 GGDDDDVDVPPFMRR 382
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A
Length = 427
Score = 188 bits (479), Expect = 2e-48
Identities = 44/371 (11%), Positives = 92/371 (24%), Gaps = 56/371 (15%)
Query: 5 NANMDITELKPRITVFGVGGGGGNAVNNMV----SSGLQGVNFVVANTDAQALM-MSKAK 59
+ N + ++ R V G G G + S+G + N +M +
Sbjct: 33 STNHSVNDISIRWGVIGAGQKGNKEADLFAGYKFSNGTTCYPTLAVNFAESDMMHLQNII 92
Query: 60 QIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEMLDK------------------THM 101
+ ++ GA P V + +
Sbjct: 93 KEDRIH--FDGLKGAARTPSVVTDLFDPETNPNANGYLDKLAQELGRKFTNEEGEVIVDQ 150
Query: 102 CFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQET- 160
+ G GGG GTG ++ ++ R + + + A + + E
Sbjct: 151 FLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPSGDPDEINNALVLLSEIDEFM 210
Query: 161 --------------VDTLIVIPNQNLFRIANDKT---TFADAFSMADQVLYSGVSCITDL 203
+ +IV N + RI + + + +V V
Sbjct: 211 REQDRLFGNSDIKPLANVIVNDNTQMQRIIESQKGTKDLKNRYVNWKEVANDNVVSTLHE 270
Query: 204 M------IKEGLINLDFADVRSVMRNMGR-AMMGTGEASGHGRG---IQAAEAAVANPLL 253
+ + D +D+ ++ GR +G + +
Sbjct: 271 INIIPENYGSDNVTYDPSDLIKLLSIPGRFLTIGKARIAKFDLHSLENSIKRSLDEGFFS 330
Query: 254 DEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSE---ANIILGATFDEALEGVI 310
E + + + S+ F+ RIR + I
Sbjct: 331 AEHQFETATMYGGFVLRPSNADFFKDVNTENRIRNTLGEYKRLDEIAGKFGDPIWDNEYA 390
Query: 311 RVSVVATGIEN 321
+ G+
Sbjct: 391 VCYTIFAGMTM 401
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 68.0 bits (166), Expect = 5e-12
Identities = 91/525 (17%), Positives = 146/525 (27%), Gaps = 226/525 (43%)
Query: 74 AGSHPEVGRAAAEE------CIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNK 127
G +V E ++I H + A + T + + K
Sbjct: 77 VGQFDQVLNLCLTEFENCYLEGNDI-------HA--LAAKLLQENDT-------TLVKTK 120
Query: 128 GVL-----TVGVVTKPF-HFEGSRRMRVAESG-----------------IEALQET---- 160
++ + +PF S R G E L++
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180
Query: 161 ---VDTLIVIPNQNLFRIANDKTTFADAFS-----MA-----------DQVLYSGVSC-- 199
V LI + L + F+ + D +L +SC
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 200 ITDLMIKEGLINLDFADVRSVMRNMG------RAMMGTGEASGHGRGIQAAEAAVAN--- 250
I G+I L A + +G R+ + G A+GH +G+ A A+A
Sbjct: 241 I-------GVIQL--AHYVVTAKLLGFTPGELRSYL-KG-ATGHSQGLVTA-VAIAETDS 288
Query: 251 -PLLDEASMKGSQGLLISITGGSDLTLF----EVDEAA--TRIREEV--DSEANIILGAT 301
+ K +IT LF EA T + + DS N
Sbjct: 289 WESFFVSVRK-------AIT-----VLFFIGVRCYEAYPNTSLPPSILEDSLEN---N-- 331
Query: 302 FDEALEGVIR--VSVVATGIENRLHRDGDDNRDSSLTTHESLKNAKFLNLSSPKLPVEDS 359
EGV +S+ + + + ++N ++ LP
Sbjct: 332 -----EGVPSPMLSI----------------SNLTQEQVQ-----DYVNKTNSHLP-AGK 364
Query: 360 HVMHHSVIAENAHCTDNQEDLNNQENSLVGDQNQELFLEEDVV---PES----------- 405
V I+ L N G +N VV P+S
Sbjct: 365 QV----EIS-----------LVN------GAKN---L----VVSGPPQSLYGLNLTLRKA 396
Query: 406 SAPHRL-ISRQRHSDSVEERGVMALIK-RIAHSFGLHENIASEEDSVHMKSESTVSYLRE 463
AP L SR S ER K + ++ F L +AS H S L
Sbjct: 397 KAPSGLDQSRIPFS----ER------KLKFSNRF-L--PVAS---PFH--S----HLLVP 434
Query: 464 RNPSISEESIDDFCVQSKPTVKCEEDKLEIPAF-------LRRQS 501
+ I++ D + V ++IP + LR S
Sbjct: 435 ASDLINK----DLVKNN---VSFNAKDIQIPVYDTFDGSDLRVLS 472
Score = 42.2 bits (99), Expect = 3e-04
Identities = 55/244 (22%), Positives = 104/244 (42%), Gaps = 62/244 (25%)
Query: 134 VVTKP----FHFEGSRRMRVAESGIEALQET-VDTLIVIPNQNLFRIANDKTTFADAFSM 188
V+ P HF G + R+ E+ + ET VD + + +F+ N+ +T +++
Sbjct: 1665 VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG--KLKTEKIFKEINEHST---SYTF 1719
Query: 189 -ADQVLYSGVS----CITDLMIKEGLINLDFADVRSVMRNMGRAMM-GTGEASGHGRGIQ 242
+++ L S +T LM K F D++S + ++ +GH G
Sbjct: 1720 RSEKGLLSATQFTQPALT-LMEKAA-----FEDLKS------KGLIPADATFAGHSLGEY 1767
Query: 243 AAEAAVANPLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVD-SEANII---- 297
AA A++A+ + E+ L+ + +T+ + A R+E+ S +I
Sbjct: 1768 AALASLADVMSIES--------LVEVVFYRGMTM----QVAVP-RDELGRSNYGMIAINP 1814
Query: 298 --LGATFD-EALEGVIR---------VSVVATGIENRLHRDGDDNRDSSLTTHESLKNAK 345
+ A+F EAL+ V+ V +V +EN+ + D R +L T ++ N
Sbjct: 1815 GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLR--ALDTVTNVLN-- 1870
Query: 346 FLNL 349
F+ L
Sbjct: 1871 FIKL 1874
Score = 37.6 bits (87), Expect = 0.007
Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 27/75 (36%)
Query: 7 NMDITELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGS 66
T I FG GG +SGL GV N D + ++I G+
Sbjct: 495 QFKATH----ILDFGPGG----------ASGL-GV-LTHRNKDGTGV------RVIVAGT 532
Query: 67 GITEGLGAGSHPEVG 81
L + G
Sbjct: 533 -----LDINPDDDYG 542
Score = 33.8 bits (77), Expect = 0.083
Identities = 57/352 (16%), Positives = 106/352 (30%), Gaps = 141/352 (40%)
Query: 254 DEASMKGSQ-GLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEA-LEGV-I 310
DE + + L+ G V+ + ++V N+ L F+ LEG I
Sbjct: 52 DEPT---TPAELVGKFLG---YVSSLVEPSKVGQFDQV---LNLCLTE-FENCYLEGNDI 101
Query: 311 RVSVVATGIENRLHRDGDDNRDSSLTTHESLKN---AKF-LNLSSPKLPVEDSHVMHHSV 366
++ A +L +N + + T E +KN A+ K + + +V
Sbjct: 102 H-ALAA-----KLL---QENDTTLVKTKELIKNYITARIMAKRPFDKKS---NSALFRAV 149
Query: 367 IAENAH---------CTDN--QE--DLNNQENSLVGD---QNQELFLEE----------- 399
NA TD+ +E DL + LVGD + E E
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 400 ----DVV-----PES--------SAP------------HRLIS-----------RQR--- 416
+++ P + S P H +++ R
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 417 ---HSDSVEERGVMALIKRIAHSFGLHENIASEEDSVHMKSESTVSYL-----RERN--- 465
HS + V A+ IA +S + ++ L R
Sbjct: 270 ATGHSQGL----VTAVA--IA--------ETDSWESFFVSVRKAITVLFFIGVRCYEAYP 315
Query: 466 -----PSISEESIDDFCVQSKPT----VK-CEEDKLE--IPAF---LRRQSH 502
PSI E+S++ + P+ + +++++ + L
Sbjct: 316 NTSLPPSILEDSLE--NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex,
bacterial tubulin, cytoskeleton, polymerization,
verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter
dejongeii}
Length = 426
Score = 48.4 bits (115), Expect = 4e-06
Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 7/148 (4%)
Query: 74 AGSHPEVGRAAAEECIDEITEMLDKTHMC---FVTAGMGGGTGTG----AAPIIAKIARN 126
A + G ++ ++ I ++KT +T +GGG+G+G + +
Sbjct: 103 ARGYNVEGEKVIDQIMNVIDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPK 162
Query: 127 KGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAF 186
K + T VV P + + A ++ + + D +++ N+ LFRIA K + +
Sbjct: 163 KRIFTFSVVPSPLISDSAVEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKLNRSPNY 222
Query: 187 SMADQVLYSGVSCITDLMIKEGLINLDF 214
+ ++ VS +T + G +N D
Sbjct: 223 MDLNNIIALIVSSVTASLRFPGKLNTDL 250
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 38.0 bits (88), Expect = 0.005
Identities = 35/178 (19%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 70 EGLGAGSHPEVGRAAAEECIDEITEMLDK-THMC------FVTAGMGGGTGTG-AAPIIA 121
G GAG++ G + E+ ++I +++D+ + + GGTG+G + ++
Sbjct: 96 HGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLE 155
Query: 122 KIA---RNKGVLTVGVVTKPFHFEGSRRMRVAES-----GIEALQETVDTLIVIPNQNLF 173
++ K V T V V + ++ L + D L+V+ N L
Sbjct: 156 RLNDRYPKKLVQTYSVFPNQDEMSDV----VVQPYNSLLTLKRLTQNADCLVVLDNTALN 211
Query: 174 RIANDK-----TTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGR 226
RIA D+ +F+ + ++ S T + G +N D + + + R
Sbjct: 212 RIATDRLHIQNPSFSQINQLVSTIM----SASTTTLRYPGYMNNDLIGLIASLIPTPR 265
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 36.7 bits (84), Expect = 0.012
Identities = 60/273 (21%), Positives = 107/273 (39%), Gaps = 85/273 (31%)
Query: 237 HGRGIQAAEAAV-----ANPLLDEASMKGS-----------QGLL-----ISITGGSDLT 275
+G AA A V AN LD +K +GLL I +TG +++
Sbjct: 770 NGNSADAAYAQVEIQPRANIQLDFPELKPYKQVKQIAPAELEGLLDLERVIVVTGFAEVG 829
Query: 276 LFEVDEAATRIREEVDSEANIILGATFDE-ALEGVIRVSVVATGIENRLHRDGDDNRDSS 334
+ + R R E+++ F E +LEG + ++ + I + +G+
Sbjct: 830 PW----GSARTRWEMEA---------FGEFSLEGCVEMAWIMGFIS---YHNGN------ 867
Query: 335 LTTHESLKNAKFLNL--SSPKLPVEDSHVM--HHSVIAENAHCTDNQEDLNNQENSLVGD 390
LK + S K PV+D V + + I E++ + +L N N +
Sbjct: 868 ------LKGRPYTGWVDSKTKEPVDDKDVKAKYETSILEHSGIRLIEPELFNGYNPEKKE 921
Query: 391 QNQELFLEEDVVP-ESSAPHRLISRQRHSDSVE-----ERG--VMALIK----------- 431
QE+ +EED+ P E+S + +H D V+ E G + L+K
Sbjct: 922 MIQEVIVEEDLEPFEASKETAEQFKHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKALR 981
Query: 432 --RI----------AHSFGLHENIASEEDSVHM 452
R+ A ++G+ ++I S+ D + +
Sbjct: 982 FDRLVAGQIPTGWNAKTYGISDDIISQVDPITL 1014
Score = 32.9 bits (74), Expect = 0.19
Identities = 58/231 (25%), Positives = 90/231 (38%), Gaps = 44/231 (19%)
Query: 112 TGTGAAPIIAKIARN--KGVLTVGVVTKPFHFEGSRRMR--VAESGIEALQETVDTLIVI 167
TG G I A++ + +G V V T F + + + A+ G + TLIV+
Sbjct: 482 TGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKG-----STLIVV 536
Query: 168 PNQNLFRIANDKTTFADAFSMADQVLYSGVSCITDLMI------KEGLINLDFADVRS-- 219
P F + + A + D G+ D +I ++G I L+ D +S
Sbjct: 537 P----FNQGSKQDVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQG-IELEHIDSKSEF 591
Query: 220 ----VMRNMGRAMMGTGEASGHGRGIQAAEAAVANPLLDEASMKGSQGLLISITGGSDLT 275
++ N+ R MMG + RGI+ A V P+ G G+ S + S T
Sbjct: 592 AHRIMLTNILR-MMGCVKKQKSARGIETRPAQVILPMSPNHGTFGGDGMY-SESKLSLET 649
Query: 276 LFEVDEAATRIREEVDSEAN------IILGATFDEALEGVIRVSVVATGIE 320
LF R +S AN I+G T L +++A GIE
Sbjct: 650 LFN--------RWHSESWANQLTVCGAIIGWTRGTGLMSA--NNIIAEGIE 690
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic
effects, aldose-ketose isomerase, multiple conformers;
HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1
PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A
1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Length = 266
Score = 32.8 bits (74), Expect = 0.21
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 79 EVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGV 129
+VG+ AA ++ I FV GGT + ++ + V
Sbjct: 11 QVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQV 61
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein complex, cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 32.7 bits (74), Expect = 0.22
Identities = 32/154 (20%), Positives = 56/154 (36%), Gaps = 24/154 (15%)
Query: 85 AEECIDEITEMLDKTHMCFVTAGMGGGTGTG-AAPIIAKIA---RNKGVLTVGVVTKPFH 140
+D + D V +GGGTG+G A +I + VL+ V+ P
Sbjct: 120 VMSRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSP-- 177
Query: 141 FEGSRRMRVAES-----GIEALQETVDTLIVIPNQNLFRIA-----NDKTTFADAFSMAD 190
V E + L+ + D ++ N+ LF +A + T D +
Sbjct: 178 ---QVSSVVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLIT 234
Query: 191 QVLYSGVSCITDLMIKEGLINLDFADVRSVMRNM 224
+ L + IT M G + +R ++ N+
Sbjct: 235 EAL----AGITASMRFSGFLT-VEISLRELLTNL 263
>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide,
hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP:
c.41.1.1
Length = 671
Score = 32.2 bits (72), Expect = 0.25
Identities = 26/165 (15%), Positives = 46/165 (27%), Gaps = 12/165 (7%)
Query: 94 EMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESG 153
++ + V+AG P GV+ V + G
Sbjct: 283 YAMEHGVVMVVSAGNNTSDSHHQYPAGYP-----GVIQVAALDYYGGTFRVAGFSSRSDG 337
Query: 154 IEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLYSGVSCITDL------MIKE 207
+ V L +P ++ A + Y G S ++ +
Sbjct: 338 VSVGAPGVTILSTVPGEDSI-GYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQ 396
Query: 208 GLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVANPL 252
N +R ++ N G G G G+ +AA+ PL
Sbjct: 397 KFPNAKPWQIRKLLENTAFDFNGNGWDHDTGYGLVKLDAALQGPL 441
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 31.4 bits (70), Expect = 0.44
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 248 VANPLLDEASMKG--SQGLLISITGGSDLTLFEVDEAA---TRIR 287
VAN L+ ++G SQG+L++ G + L D+ ++R
Sbjct: 680 VAN--LEPKKLRGIGSQGMLLAADDGERVALLMPDKEVKLGAKVR 722
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 30.6 bits (68), Expect = 0.92
Identities = 42/238 (17%), Positives = 70/238 (29%), Gaps = 30/238 (12%)
Query: 270 GGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALEGVIRVSVVATGIENRLHRDGDD 329
G SD L E E E + E A I + I +RL ++
Sbjct: 1 GPSDDDLLE-SEDDYGSEEALSEENVHEASANPQPEDFHGIDI-----VINHRLKTSLEE 54
Query: 330 NRDSSLTTHESLKNA-------KFLNLS---SPKLPVEDSHVMHHSVIAENAHCTDNQED 379
+ T + K+ + S + E + +N ED
Sbjct: 55 GKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIED 114
Query: 380 LNNQENSLVGDQNQELF-----LEEDVVPESSAPHRLISRQRHSDSVEERGVMALIK-RI 433
+ + V ++ E+ D E P R+I QR S + L+K R
Sbjct: 115 QQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWR- 173
Query: 434 AHSFGLHENIA---SEEDSVHMKSESTVSYLRERNPSISEESIDDFCVQSKPTVKCEE 488
L+ + A + D V + E + N I + ++ Q K
Sbjct: 174 ----RLNYDEATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSV 227
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI,
infectious disease, LYME disease, non-hodgkin lymphomas;
2.20A {Borrelia burgdorferi B31}
Length = 289
Score = 30.0 bits (67), Expect = 1.3
Identities = 9/54 (16%), Positives = 22/54 (40%)
Query: 76 SHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGV 129
++ ++ + AA +I E F+ G + G + ++ +NK +
Sbjct: 29 TYEDISKWAANHVAQKINEFSPTKENPFILGLPTGSSPIGMYKNLIELNKNKKI 82
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme,
conformational disorder, conformational differences,
hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP:
c.124.1.1
Length = 289
Score = 30.0 bits (67), Expect = 1.4
Identities = 8/54 (14%), Positives = 17/54 (31%)
Query: 76 SHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGV 129
+ + AA+ + I + F G T G + + +N +
Sbjct: 8 HYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDL 61
>1vjt_A Alpha-glucosidase; TM0752, structural genomics, JCSG, PSI, protein
structure initiative, joint center for structural
genomics, hydrolase; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 483
Score = 29.7 bits (66), Expect = 1.4
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 271 GSDLTLFEVDEA--------ATRIREEVDSEANIILGATFDEALEGVIRVSVVATGIENR 322
+ + + +V E A + EE++S I+ ++ DEA++G + A + R
Sbjct: 43 DTHIYMMDVHERRLNASYILARKYVEELNSPVKIVKTSSLDEAIDGADFIINTAYPYDPR 102
Query: 323 LHRDGDDNRD 332
H G D
Sbjct: 103 YHDSGSQRWD 112
>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural
genomics, NYSGXRC, target 9284B, enolase family, PSI-2;
2.60A {Bordetella bronchiseptica}
Length = 392
Score = 29.3 bits (65), Expect = 2.0
Identities = 21/153 (13%), Positives = 44/153 (28%), Gaps = 9/153 (5%)
Query: 182 FADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGI 241
+ + + + + + ++ L FAD ++ +G +
Sbjct: 54 WGEVWCNFPACGAEHRARLVETVLAPLLTARAFADPAQAFAHLEARTAVLAIQTGEPGPL 113
Query: 242 QAAEAAVANPLLDEASMKGSQGLLISITGGSD--------LTLFEVDEAATRIREEVDSE 293
A A + L D A+ + Q L + G D + ++ R E
Sbjct: 114 AQAIAGLDIALCDLAARRAGQPLWAWLGGSGDRIGVYASGINPENPEDVVARKAAEGYRA 173
Query: 294 ANIILGATFDEALEGVIRVSVVATGIENRLHRD 326
+ +G + + V G L D
Sbjct: 174 FKLKVGFDDARDVRNALHVR-ELLGAATPLMAD 205
>2wam_A RV2714, conserved hypothetical alanine and leucine rich protein;
unknown function; 2.60A {Mycobacterium tuberculosis}
Length = 351
Score = 28.4 bits (63), Expect = 3.4
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 7/93 (7%)
Query: 206 KEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVANP--LLDEASMKGSQG 263
+E + + + + E G + V P L +Q
Sbjct: 200 RELISDFQPSISEIQVPGS---ASNLLEYRMAQHGHEVVGFTVHVPHYLTQTDYPAAAQA 256
Query: 264 LL--ISITGGSDLTLFEVDEAATRIREEVDSEA 294
LL ++ TG L L + EAA ++ ++D +
Sbjct: 257 LLEQVAKTGSLQLPLAVLAEAAAEVQAKIDEQV 289
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+,
maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 480
Score = 28.5 bits (63), Expect = 4.1
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 9/70 (12%)
Query: 271 GSDLTLFEVDEA--------ATRIREEVDSEANIILGATFDEALEGVIRVSVVATGIENR 322
GS +TL ++DE A + EEV ++ D+ + + +
Sbjct: 32 GSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDA-DFVINTAMVGGH 90
Query: 323 LHRDGDDNRD 332
+ +
Sbjct: 91 TYLEKVRQIG 100
>2e52_A Type II restriction enzyme HINDIII; type II restriction enzyme
HINDIII(E.C.3.1.21.4)/DNA; HET: DNA; 2.00A {Haemophilus
influenzae rd KW20} PDB: 3a4k_A*
Length = 300
Score = 28.0 bits (62), Expect = 4.5
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 287 REEVDSEANIILGATFDEALEGVIRVSVVATGIENR 322
+E + NII T +EA+E +++ +++ IE
Sbjct: 250 KEYWKKQINIIKNFTREEAIEALLKDINMSSKIETI 285
>1tvk_B Tubulin beta chain; epothilone, taxol, ligand interactions, cell
cycle, structural protein; HET: GDP GTP EP; 2.89A {Bos
taurus} SCOP: c.32.1.1 d.79.2.1 PDB: 1tub_B* 1jff_B*
1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* 2hxf_B* 2hxh_B* 2p4n_B*
2wbe_B* 3dco_B* 3edl_B* 1z2b_B* 3hke_B* 3du7_B* 3e22_B*
3hkc_B* 3hkd_B* 3hkb_B*
Length = 427
Score = 28.0 bits (62), Expect = 4.6
Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 17/118 (14%)
Query: 74 AGSHPEVGRAAAEECIDEI---TEMLDKTHMCFVTAGMGGGTGTG-AAPIIAKIA---RN 126
A H G + +D + +E D +T +GGGTG+G +I+KI +
Sbjct: 102 AKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPD 161
Query: 127 KGVLTVGVVTKPFHFEGSRRMRVAES-----GIEALQETVDTLIVIPNQNLFRIANDK 179
+ + T VV P V E + L E D I N+ L+ I
Sbjct: 162 RIMNTFSVVPSP-----KVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRT 214
>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease,
intracellular proteinase regulat; HET: CSX 1PE; 1.56A
{Bacillus clausii}
Length = 327
Score = 27.8 bits (61), Expect = 5.9
Identities = 9/69 (13%), Positives = 25/69 (36%)
Query: 187 SMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEA 246
+MA + ++ I +L +L ++ + + + T +A G+G
Sbjct: 250 AMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDLVE 309
Query: 247 AVANPLLDE 255
+ ++
Sbjct: 310 RITGQFTEK 318
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB:
2vps_A 2vpm_A
Length = 652
Score = 27.6 bits (61), Expect = 6.9
Identities = 7/49 (14%), Positives = 12/49 (24%)
Query: 417 HSDSVEERGVMALIKRIAHSFGLHENIASEEDSVHMKSESTVSYLRERN 465
+ EE+ + A + GL + D V
Sbjct: 402 VDEEREEQYTALYCMQAAEAVGLEGKLCILFDEFRFDDNGHVVDSDGVR 450
>1ec7_A Glucarate dehydratase; lyase; 1.90A {Escherichia coli} SCOP:
c.1.11.2 d.54.1.1 PDB: 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A*
1jct_A* 1bqg_A
Length = 446
Score = 27.4 bits (60), Expect = 7.7
Identities = 6/55 (10%), Positives = 16/55 (29%), Gaps = 5/55 (9%)
Query: 205 IKEGLINLDFADVRSVMRNMGRAM-----MGTGEASGHGRGIQAAEAAVANPLLD 254
++ + ++V+ + G G + R + +LD
Sbjct: 68 AIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLD 122
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.314 0.131 0.361
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 4,040,487
Number of extensions: 187941
Number of successful extensions: 652
Number of sequences better than 10.0: 1
Number of HSP's gapped: 633
Number of HSP's successfully gapped: 42
Length of query: 502
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 406
Effective length of database: 3,365,806
Effective search space: 1366517236
Effective search space used: 1366517236
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.1 bits)