HHsearch alignment for GI: 254781177 and conserved domain: COG4972
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=100.00 E-value=3.7e-38 Score=243.94 Aligned_cols=332 Identities=19% Similarity=0.312 Sum_probs=255.1
Q ss_pred CCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEE--CCCCCCCCCEEECHHHHHHHHHHHHHHHH
Q ss_conf 1136686799999149806999998337665333356776159999961--10111008837478999999999999999
Q gi|254781177|r 16 LLSNRTYIVSALDIGSTKTVCMIGKLVPQNTTSLLSGRTHRIEVIGIGC--QQSHGVKMGTIVDIDAVERVVRQVVDAAE 93 (440)
Q Consensus 16 ~~~~k~~ii~~iDiGsski~~~v~e~~~~~~~~~~~~~~~~~~iig~g~--~~s~gi~~G~I~d~~~~~~~I~~ai~~ae 93 (440)
T Consensus 4 l~~k~~~~~vGIdI~~~sVKvvqLs--~~g-------~--~~kLe~y~~~~lp~~iv~dg~ivd~~av~~~Lk~ala~-- 70 (354)
T COG4972 4 LFGKKLNAAVGIDIGSHSVKVVQLS--RSG-------N--RYKLEKYASEPLPENIVADGKIVDYDAVASALKRALAK-- 70 (354)
T ss_pred CCCCCCCCEEEEEECCCEEEEEEEC--CCC-------C--CEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH--
T ss_conf 0135545145575056458899971--568-------9--60143436404672400368713689999999999986--
Q ss_pred HHHCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEECCCCCCCCCCC
Q ss_conf 98297653799972687664032111203541003527899999864232148653245775112115568655667223
Q gi|254781177|r 94 RMAGFTVDNLLVNISAGCLKSQQHFVEMKIGWREVNDSDIQILLKSSFRRYLRDQKRTLLHSIITDYALDGKSGIKSPIS 173 (440)
Q Consensus 94 ~~ag~~i~~v~v~i~g~~i~s~~~~~~~~~~~~~I~~~DI~~~i~~a~~~~~~~~~~~iih~~p~~y~iD~~~~v~nPiG 173 (440)
T Consensus 71 --~gi~~k~aa~AVP~s~aitk~i~vp~-----~lde~eL~~~V~~ea~~y~PyP~EEv----~lDy~vlg~~-~~~~-e 137 (354)
T COG4972 71 --LGIKSKNAATAVPGSAAITKTIPVPD-----ELDEKELEDQVESEASRYIPYPLEEV----NLDYQVLGPS-ANEP-E 137 (354)
T ss_pred --CCCCHHHHHHHCCCCCEEEEEECCCC-----CCCHHHHHHHHHHHHHHCCCCCHHHC----CCCEEEECCC-CCCC-C
T ss_conf --59633455521586400367741687-----64688999999998763489863532----4321783465-5788-6
Q ss_pred CCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH------CCCCCCCCCEEEEEECCCCEEEEEEE
Q ss_conf 423203689999723136888899876532331123332102345531------24334555079999537715578840
Q gi|254781177|r 174 MFADKIGIESHLLTVEKSSMKNLERAINRAHLSVERMVASPYASGLAT------LVDDEFELGSVVIDMGGGTTKIAIFD 247 (440)
Q Consensus 174 m~g~~L~v~~~~v~~~~~~i~~~~~~i~~~gl~v~~i~~~p~Asa~a~------L~~~ek~~Gv~iIDiGa~tT~i~i~~ 247 (440)
T Consensus 138 ------~v~Vll~AtrkE~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~ 211 (354)
T COG4972 138 ------KVQVLLVATRKEVVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQ 211 (354)
T ss_pred ------CEEEEEEEEEHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHEEEEECCCCEEEEEEE
T ss_conf ------27999997105666788999997699745885187899999999998757860223320356224533799998
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCEEECCHHHHHHHHHH
Q ss_conf 35302453102422775088886334523678887642574033555300001223357887653043389999999999
Q gi|254781177|r 248 KGKLVYMDVIAIGGSHVTNDLARGLSISLDNAERLKVMHPSIIPSLADEHDILSIPTIGNADHNDLVQVSRAMISRIIQA 327 (440)
Q Consensus 248 ~g~l~~~~~i~iGG~~iT~DIa~~l~i~~~eAE~lK~~~G~a~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~l~~II~~ 327 (440)
T Consensus 212 ~gk~ly~r~~~~g~~Qlt~~i~r~~~L~~~~a~~~k~~~~~--P~--------------------------~y~~~vl~~ 263 (354)
T COG4972 212 DGKILYTREVPVGTDQLTQEIQRAYSLTEEKAEEIKRGGTL--PT--------------------------DYGSEVLRP 263 (354)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCC--CC--------------------------CHHHHHHHH
T ss_conf 79035676145748999999999858996676898727899--98--------------------------456788888
Q ss_pred HHHHHHHHHHHHHHH--CCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCHH-------HHCCCHHH
Q ss_conf 999999988887640--686445774399973234445789999998389759971433478212-------22372379
Q gi|254781177|r 328 RIEETFELIGERIKK--SGFSSLASKRIVLTGGASQVIGLQEMLRETICSNVRMGRPIGAVGLPF-------SARSPAFS 398 (440)
Q Consensus 328 Rv~ei~~~i~~~l~~--~~~~~~~~~~IvLtGGgs~l~gl~~~~~~~~~~~vri~~P~~~~g~~~-------~~~~p~~s 398 (440)
T Consensus 264 f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~t~vanPf~~~~~~~~v~k~~l~~dap~l~ 343 (354)
T COG4972 264 FLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIPTEVANPFAYMALNVKVNKGYLQTDAPALT 343 (354)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf 89999999999999987435651454799846961066399999987389807627789876521233365123460778
Q ss_pred HHHHHHHHH
Q ss_conf 999999977
Q gi|254781177|r 399 TVIGLMIYP 407 (440)
Q Consensus 399 ta~Gl~~~~ 407 (440)
T Consensus 344 ia~GLAlRg 352 (354)
T COG4972 344 IALGLALRG 352 (354)
T ss_pred HHHHHHHHC
T ss_conf 876655503