HHsearch alignment for GI: 254781177 and conserved domain: TIGR00904
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis . Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor . The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography . It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes .; GO: 0000902 cell morphogenesis.
Probab=100.00 E-value=6.3e-36 Score=230.82 Aligned_cols=292 Identities=20% Similarity=0.359 Sum_probs=222.3
Q ss_pred EEEEECCCEEEEEE---EEECCCCCCCCCCCC---CCCEEEEEEEE--------CCC-----CCCCCCEEECHHHHHHHH
Q ss_conf 99991498069999---983376653333567---76159999961--------101-----110088374789999999
Q gi|254781177|r 25 SALDIGSTKTVCMI---GKLVPQNTTSLLSGR---THRIEVIGIGC--------QQS-----HGVKMGTIVDIDAVERVV 85 (440)
Q Consensus 25 ~~iDiGsski~~~v---~e~~~~~~~~~~~~~---~~~~~iig~g~--------~~s-----~gi~~G~I~d~~~~~~~I 85 (440)
T Consensus 5 ~gIDLGTANTlVyVkg~GIVl~EPSVVA~~~~~f~~~~~~v~AVG~~AK~MLGkTP~nI~AiRPlKDGVIADf~~Te~Ml 84 (337)
T TIGR00904 5 IGIDLGTANTLVYVKGRGIVLNEPSVVAIRTDRFDAKTKSVLAVGHEAKEMLGKTPGNIVAIRPLKDGVIADFEVTEKML 84 (337)
T ss_pred CCHHHCCCCEEEEECCCEEEEECCCEEEEEECCCCCCCCEEEEEEHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHH
T ss_conf 20011030346888350279517845888604305754216885004653028798872686468885124768999999
Q ss_pred HHHHHHHHHH-HCCEEE-EEEEECCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEC
Q ss_conf 9999999998-297653-79997268766403211120354100352789999986423214865324577511211556
Q gi|254781177|r 86 RQVVDAAERM-AGFTVD-NLLVNISAGCLKSQQHFVEMKIGWREVNDSDIQILLKSSFRRYLRDQKRTLLHSIITDYALD 163 (440)
Q Consensus 86 ~~ai~~ae~~-ag~~i~-~v~v~i~g~~i~s~~~~~~~~~~~~~I~~~DI~~~i~~a~~~~~~~~~~~iih~~p~~y~iD 163 (440)
T Consensus 85 kYFI~~v~~rk~~~~P~P~~~icVP~G-----------------iT~VErRA-V~esA~--------------------- 125 (337)
T TIGR00904 85 KYFIKKVHSRKSFFRPKPRIVICVPSG-----------------ITPVERRA-VKESAL--------------------- 125 (337)
T ss_pred HHHHHHHHCCCCCCCCCCEEEEEECCC-----------------CCHHHHHH-HHHHHH---------------------
T ss_conf 999999856775368987699985379-----------------98667899-999985---------------------
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH-CCCCCCCCCEEEEEECCCCEE
Q ss_conf 8655667223423203689999723136888899876532331123332102345531-243345550799995377155
Q gi|254781177|r 164 GKSGIKSPISMFADKIGIESHLLTVEKSSMKNLERAINRAHLSVERMVASPYASGLAT-LVDDEFELGSVVIDMGGGTTK 242 (440)
Q Consensus 164 ~~~~v~nPiGm~g~~L~v~~~~v~~~~~~i~~~~~~i~~~gl~v~~i~~~p~Asa~a~-L~~~ek~~Gv~iIDiGa~tT~ 242 (440)
T Consensus 126 --------------------------------------~AGAREV~lIEEPmAAAIGA~LPV~EP-~GsMvvDIGGGTTE 166 (337)
T TIGR00904 126 --------------------------------------SAGAREVYLIEEPMAAAIGAGLPVEEP-TGSMVVDIGGGTTE 166 (337)
T ss_pred --------------------------------------HCCCEEEEEECCCHHHHHCCCCCCCCC-CCCEEEECCCCCEE
T ss_conf --------------------------------------079707886234137863587380467-66878984887223
Q ss_pred EEEEECCCCEEEEEECCCHHHHHHHHH------HHCCCCHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCC-CCCCEEE
Q ss_conf 788403530245310242277508888------633452367888764257403355530000122335788-7653043
Q gi|254781177|r 243 IAIFDKGKLVYMDVIAIGGSHVTNDLA------RGLSISLDNAERLKVMHPSIIPSLADEHDILSIPTIGNA-DHNDLVQ 315 (440)
Q Consensus 243 i~i~~~g~l~~~~~i~iGG~~iT~DIa------~~l~i~~~eAE~lK~~~G~a~~~~~~~~~~i~~~~~~~~-~~~~~~~ 315 (440)
T Consensus 167 vaVISLgGiV~S~SiRvgGDefDeaII~YiRr~ynllIGe~TAE~IKieIGsA~~~~~~e~~~mEv~GrD~~~GlPr~~~ 246 (337)
T TIGR00904 167 VAVISLGGIVVSRSIRVGGDEFDEAIINYIRRTYNLLIGERTAERIKIEIGSAYPEENDEERKMEVRGRDLVTGLPRTIE 246 (337)
T ss_pred EEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEECCCCCCEEEEEEECCHHHCCCCCEEE
T ss_conf 00211054567654443143011688998886438556712388874544431016788600355501132112772057
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCHHHH
Q ss_conf 3899999999999999999888876406864---4577439997323444578999999838975997143347821222
Q gi|254781177|r 316 VSRAMISRIIQARIEETFELIGERIKKSGFS---SLASKRIVLTGGASQVIGLQEMLRETICSNVRMGRPIGAVGLPFSA 392 (440)
Q Consensus 316 i~~~~l~~II~~Rv~ei~~~i~~~l~~~~~~---~~~~~~IvLtGGgs~l~gl~~~~~~~~~~~vri~~P~~~~g~~~~~ 392 (440)
T Consensus 247 i~s~ev~EaL~epv~~IV~aVk~tLE~tPPELA~DIveRGiVLTGGGaLLrnLDk~lS~eTg~PV~~A------------ 314 (337)
T TIGR00904 247 INSVEVREALQEPVNQIVEAVKSTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVA------------ 314 (337)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCEEEECCHHHHHCCCHHHHHHCCCCEEEC------------
T ss_conf 76289999887368899999998751688704657764693762630545210158777348636886------------
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 37237999999997
Q gi|254781177|r 393 RSPAFSTVIGLMIY 406 (440)
Q Consensus 393 ~~p~~sta~Gl~~~ 406 (440)
T Consensus 315 d~PL~cVA~G~G~~ 328 (337)
T TIGR00904 315 DDPLLCVALGTGKA 328 (337)
T ss_pred CCCHHHHHHHHHHH
T ss_conf 87133587654289