HHsearch alignment for GI: 254781177 and conserved domain: TIGR00904

>TIGR00904 mreB cell shape determining protein, MreB/Mrl family; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis . Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor . The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography . It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes .; GO: 0000902 cell morphogenesis.
Probab=100.00  E-value=6.3e-36  Score=230.82  Aligned_cols=292  Identities=20%  Similarity=0.359  Sum_probs=222.3

Q ss_pred             EEEEECCCEEEEEE---EEECCCCCCCCCCCC---CCCEEEEEEEE--------CCC-----CCCCCCEEECHHHHHHHH
Q ss_conf             99991498069999---983376653333567---76159999961--------101-----110088374789999999
Q gi|254781177|r   25 SALDIGSTKTVCMI---GKLVPQNTTSLLSGR---THRIEVIGIGC--------QQS-----HGVKMGTIVDIDAVERVV   85 (440)
Q Consensus        25 ~~iDiGsski~~~v---~e~~~~~~~~~~~~~---~~~~~iig~g~--------~~s-----~gi~~G~I~d~~~~~~~I   85 (440)
T Consensus         5 ~gIDLGTANTlVyVkg~GIVl~EPSVVA~~~~~f~~~~~~v~AVG~~AK~MLGkTP~nI~AiRPlKDGVIADf~~Te~Ml   84 (337)
T TIGR00904         5 IGIDLGTANTLVYVKGRGIVLNEPSVVAIRTDRFDAKTKSVLAVGHEAKEMLGKTPGNIVAIRPLKDGVIADFEVTEKML   84 (337)
T ss_pred             CCHHHCCCCEEEEECCCEEEEECCCEEEEEECCCCCCCCEEEEEEHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHH
T ss_conf             20011030346888350279517845888604305754216885004653028798872686468885124768999999


Q ss_pred             HHHHHHHHHH-HCCEEE-EEEEECCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEC
Q ss_conf             9999999998-297653-79997268766403211120354100352789999986423214865324577511211556
Q gi|254781177|r   86 RQVVDAAERM-AGFTVD-NLLVNISAGCLKSQQHFVEMKIGWREVNDSDIQILLKSSFRRYLRDQKRTLLHSIITDYALD  163 (440)
Q Consensus        86 ~~ai~~ae~~-ag~~i~-~v~v~i~g~~i~s~~~~~~~~~~~~~I~~~DI~~~i~~a~~~~~~~~~~~iih~~p~~y~iD  163 (440)
T Consensus        85 kYFI~~v~~rk~~~~P~P~~~icVP~G-----------------iT~VErRA-V~esA~---------------------  125 (337)
T TIGR00904        85 KYFIKKVHSRKSFFRPKPRIVICVPSG-----------------ITPVERRA-VKESAL---------------------  125 (337)
T ss_pred             HHHHHHHHCCCCCCCCCCEEEEEECCC-----------------CCHHHHHH-HHHHHH---------------------
T ss_conf             999999856775368987699985379-----------------98667899-999985---------------------


Q ss_pred             CCCCCCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH-CCCCCCCCCEEEEEECCCCEE
Q ss_conf             8655667223423203689999723136888899876532331123332102345531-243345550799995377155
Q gi|254781177|r  164 GKSGIKSPISMFADKIGIESHLLTVEKSSMKNLERAINRAHLSVERMVASPYASGLAT-LVDDEFELGSVVIDMGGGTTK  242 (440)
Q Consensus       164 ~~~~v~nPiGm~g~~L~v~~~~v~~~~~~i~~~~~~i~~~gl~v~~i~~~p~Asa~a~-L~~~ek~~Gv~iIDiGa~tT~  242 (440)
T Consensus       126 --------------------------------------~AGAREV~lIEEPmAAAIGA~LPV~EP-~GsMvvDIGGGTTE  166 (337)
T TIGR00904       126 --------------------------------------SAGAREVYLIEEPMAAAIGAGLPVEEP-TGSMVVDIGGGTTE  166 (337)
T ss_pred             --------------------------------------HCCCEEEEEECCCHHHHHCCCCCCCCC-CCCEEEECCCCCEE
T ss_conf             --------------------------------------079707886234137863587380467-66878984887223


Q ss_pred             EEEEECCCCEEEEEECCCHHHHHHHHH------HHCCCCHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCC-CCCCEEE
Q ss_conf             788403530245310242277508888------633452367888764257403355530000122335788-7653043
Q gi|254781177|r  243 IAIFDKGKLVYMDVIAIGGSHVTNDLA------RGLSISLDNAERLKVMHPSIIPSLADEHDILSIPTIGNA-DHNDLVQ  315 (440)
Q Consensus       243 i~i~~~g~l~~~~~i~iGG~~iT~DIa------~~l~i~~~eAE~lK~~~G~a~~~~~~~~~~i~~~~~~~~-~~~~~~~  315 (440)
T Consensus       167 vaVISLgGiV~S~SiRvgGDefDeaII~YiRr~ynllIGe~TAE~IKieIGsA~~~~~~e~~~mEv~GrD~~~GlPr~~~  246 (337)
T TIGR00904       167 VAVISLGGIVVSRSIRVGGDEFDEAIINYIRRTYNLLIGERTAERIKIEIGSAYPEENDEERKMEVRGRDLVTGLPRTIE  246 (337)
T ss_pred             EEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEECCCCCCEEEEEEECCHHHCCCCCEEE
T ss_conf             00211054567654443143011688998886438556712388874544431016788600355501132112772057


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCHHHH
Q ss_conf             3899999999999999999888876406864---4577439997323444578999999838975997143347821222
Q gi|254781177|r  316 VSRAMISRIIQARIEETFELIGERIKKSGFS---SLASKRIVLTGGASQVIGLQEMLRETICSNVRMGRPIGAVGLPFSA  392 (440)
Q Consensus       316 i~~~~l~~II~~Rv~ei~~~i~~~l~~~~~~---~~~~~~IvLtGGgs~l~gl~~~~~~~~~~~vri~~P~~~~g~~~~~  392 (440)
T Consensus       247 i~s~ev~EaL~epv~~IV~aVk~tLE~tPPELA~DIveRGiVLTGGGaLLrnLDk~lS~eTg~PV~~A------------  314 (337)
T TIGR00904       247 INSVEVREALQEPVNQIVEAVKSTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVA------------  314 (337)
T ss_pred             ECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCEEEECCHHHHHCCCHHHHHHCCCCEEEC------------
T ss_conf             76289999887368899999998751688704657764693762630545210158777348636886------------


Q ss_pred             CCCHHHHHHHHHHH
Q ss_conf             37237999999997
Q gi|254781177|r  393 RSPAFSTVIGLMIY  406 (440)
Q Consensus       393 ~~p~~sta~Gl~~~  406 (440)
T Consensus       315 d~PL~cVA~G~G~~  328 (337)
T TIGR00904       315 DDPLLCVALGTGKA  328 (337)
T ss_pred             CCCHHHHHHHHHHH
T ss_conf             87133587654289