HHsearch alignment for GI: 254781177 and conserved domain: TIGR02627
>TIGR02627 rhamnulo_kin rhamnulokinase; InterPro: IPR013449 Rhamnulokinase (2.7.1.5 from EC) is an enzyme that catalyzes the second step in rhamnose catabolism.; GO: 0008993 rhamnulokinase activity, 0019301 rhamnose catabolic process.
Probab=93.14 E-value=0.6 Score=25.05 Aligned_cols=129 Identities=17% Similarity=0.186 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHCCC-CCCCCCCCHH-CCC--------CCCCCCCCCCCEEECCHHHHHHHHHHH
Q ss_conf 422775088886334523678887642574-0335553000-012--------233578876530433899999999999
Q gi|254781177|r 259 IGGSHVTNDLARGLSISLDNAERLKVMHPS-IIPSLADEHD-ILS--------IPTIGNADHNDLVQVSRAMISRIIQAR 328 (440)
Q Consensus 259 iGG~~iT~DIa~~l~i~~~eAE~lK~~~G~-a~~~~~~~~~-~i~--------~~~~~~~~~~~~~~i~~~~l~~II~~R 328 (440)
T Consensus 296 IMGLWl~qrv~~~~~~~~dl~~l~~~A~~~p~f~~iInpnD~RF~nP~~M~~eI~~yC-REt~Q~vP~s~aeLArCiFdS 374 (460)
T TIGR02627 296 IMGLWLLQRVCRERDDIKDLAALIEQAKAEPAFKSIINPNDDRFINPENMVEEIQAYC-RETNQPVPESDAELARCIFDS 374 (460)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEECCCHHHCCCCHHHHHHHHHHH-HHCCCCCCCCHHHHHHHHHHH
T ss_conf 4458999998533013546999999971389811300677311479654799999975-423788999655688878888
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCHHHHCCCHHHHHHHHH
Q ss_conf 9999998888764068644577439997323444578999999838975997143347821222372379999999
Q gi|254781177|r 329 IEETFELIGERIKKSGFSSLASKRIVLTGGASQVIGLQEMLRETICSNVRMGRPIGAVGLPFSARSPAFSTVIGLM 404 (440)
Q Consensus 329 v~ei~~~i~~~l~~~~~~~~~~~~IvLtGGgs~l~gl~~~~~~~~~~~vri~~P~~~~g~~~~~~~p~~sta~Gl~ 404 (440)
T Consensus 375 LAl~Y~~~~~~l~~--l~g~~i~~LhIVGGGs~n~~LNQL~AD~cGi~V~--------------AGPvEAs~lGN~ 434 (460)
T TIGR02627 375 LALLYRQVLLELAE--LRGKPISQLHIVGGGSQNAFLNQLCADLCGIEVI--------------AGPVEASTLGNI 434 (460)
T ss_pred HHHHHHHHHHHHHH--HCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCEE--------------ECCHHHHHHHHH
T ss_conf 99999999999873--0268855146861751444667788887288144--------------153367887789