HHsearch alignment for GI: 254781177 and conserved domain: pfam11104

>pfam11104 Competence_A Competence protein A. Competence protein A is responsible for the export of a competence-stimulating peptide from the cell, which is thought to induce competence when a critical extracellular concentration is reached.
Probab=99.23  E-value=2.7e-10  Score=80.01  Aligned_cols=136  Identities=18%  Similarity=0.233  Sum_probs=104.3

Q ss_pred             CCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             10111008837478999999999999999982976537999726876640321112035410035278999998642321
Q gi|254781177|r   65 QQSHGVKMGTIVDIDAVERVVRQVVDAAERMAGFTVDNLLVNISAGCLKSQQHFVEMKIGWREVNDSDIQILLKSSFRRY  144 (440)
Q Consensus        65 ~~s~gi~~G~I~d~~~~~~~I~~ai~~ae~~ag~~i~~v~v~i~g~~i~s~~~~~~~~~~~~~I~~~DI~~~i~~a~~~~  144 (440)
T Consensus         2 lP~g~i~~g~i~d~~~l~~~L~~~~~~----~~~~~k~v~~sip~~~vi~r~i~lP-----~~~~~~el~~~i~~e~~~~   72 (146)
T pfam11104         2 LPEGAVVEGNIKDIDAVAEALKQLKKK----SGTKTKNVAVAVPGSAVITKVIQMP-----AGLNEDELEDQIELEADQY   72 (146)
T ss_pred             CCCCCCCCCEECCHHHHHHHHHHHHHH----CCCCCCEEEEEECCCEEEEEEEECC-----CCCCHHHHHHHHHHHHHHH
T ss_conf             799842488274899999999999997----6998617999947760489998589-----8899899999999999986


Q ss_pred             CCCCCEEEEEEECCEEEECCCCCCCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf             48653245775112115568655667223423203689999723136888899876532331123332102345531
Q gi|254781177|r  145 LRDQKRTLLHSIITDYALDGKSGIKSPISMFADKIGIESHLLTVEKSSMKNLERAINRAHLSVERMVASPYASGLAT  221 (440)
Q Consensus       145 ~~~~~~~iih~~p~~y~iD~~~~v~nPiGm~g~~L~v~~~~v~~~~~~i~~~~~~i~~~gl~v~~i~~~p~Asa~a~  221 (440)
T Consensus        73 iP~~~~e~~----~Dy~il~~~-~~~-~~------~~~Vlv~Aa~k~~v~~~~~~~~~aGl~~~~iDv~~~Al~ra~  137 (146)
T pfam11104        73 IPFPLEEVS----LDFEVLGPS-ESN-PE------KVDVLLAATRKENVDSRVDALEAAGLKPKVVDVESYALERAF  137 (146)
T ss_pred             CCCCHHHHE----EEEEEECCC-CCC-CC------EEEEEEEEECHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHH
T ss_conf             799716718----889993567-899-87------079999983288999999999986996589951699999999