HHsearch alignment for GI: 254781177 and conserved domain: pfam11104
>pfam11104 Competence_A Competence protein A. Competence protein A is responsible for the export of a competence-stimulating peptide from the cell, which is thought to induce competence when a critical extracellular concentration is reached.
Probab=99.23 E-value=2.7e-10 Score=80.01 Aligned_cols=136 Identities=18% Similarity=0.233 Sum_probs=104.3
Q ss_pred CCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 10111008837478999999999999999982976537999726876640321112035410035278999998642321
Q gi|254781177|r 65 QQSHGVKMGTIVDIDAVERVVRQVVDAAERMAGFTVDNLLVNISAGCLKSQQHFVEMKIGWREVNDSDIQILLKSSFRRY 144 (440)
Q Consensus 65 ~~s~gi~~G~I~d~~~~~~~I~~ai~~ae~~ag~~i~~v~v~i~g~~i~s~~~~~~~~~~~~~I~~~DI~~~i~~a~~~~ 144 (440)
T Consensus 2 lP~g~i~~g~i~d~~~l~~~L~~~~~~----~~~~~k~v~~sip~~~vi~r~i~lP-----~~~~~~el~~~i~~e~~~~ 72 (146)
T pfam11104 2 LPEGAVVEGNIKDIDAVAEALKQLKKK----SGTKTKNVAVAVPGSAVITKVIQMP-----AGLNEDELEDQIELEADQY 72 (146)
T ss_pred CCCCCCCCCEECCHHHHHHHHHHHHHH----CCCCCCEEEEEECCCEEEEEEEECC-----CCCCHHHHHHHHHHHHHHH
T ss_conf 799842488274899999999999997----6998617999947760489998589-----8899899999999999986
Q ss_pred CCCCCEEEEEEECCEEEECCCCCCCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 48653245775112115568655667223423203689999723136888899876532331123332102345531
Q gi|254781177|r 145 LRDQKRTLLHSIITDYALDGKSGIKSPISMFADKIGIESHLLTVEKSSMKNLERAINRAHLSVERMVASPYASGLAT 221 (440)
Q Consensus 145 ~~~~~~~iih~~p~~y~iD~~~~v~nPiGm~g~~L~v~~~~v~~~~~~i~~~~~~i~~~gl~v~~i~~~p~Asa~a~ 221 (440)
T Consensus 73 iP~~~~e~~----~Dy~il~~~-~~~-~~------~~~Vlv~Aa~k~~v~~~~~~~~~aGl~~~~iDv~~~Al~ra~ 137 (146)
T pfam11104 73 IPFPLEEVS----LDFEVLGPS-ESN-PE------KVDVLLAATRKENVDSRVDALEAAGLKPKVVDVESYALERAF 137 (146)
T ss_pred CCCCHHHHE----EEEEEECCC-CCC-CC------EEEEEEEEECHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHH
T ss_conf 799716718----889993567-899-87------079999983288999999999986996589951699999999