RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781177|ref|YP_003065590.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] (440 letters) >gnl|CDD|162236 TIGR01174, ftsA, cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. Length = 371 Score = 291 bits (746), Expect = 4e-79 Identities = 128/385 (33%), Positives = 221/385 (57%), Gaps = 15/385 (3%) Query: 23 IVSALDIGSTKTVCMIGKLVPQNTTSLLSGRTHRIEVIGIGCQQSHGVKMGTIVDIDAVE 82 ++ LDIG++K ++ +++ + +IG+G S G+K G I DI+A Sbjct: 1 LIVGLDIGTSKICAIVAEVLEDG----------ELNIIGVGTHPSRGIKKGVINDIEAAV 50 Query: 83 RVVRQVVDAAERMAGFTVDNLLVNISAGCLKSQQHFVEMKIGWREVNDSDIQILLKSSFR 142 +++ ++AAE MAG + +++V+IS +KSQ + I +EV DI+ +L+++ Sbjct: 51 GSIQRAIEAAELMAGCEIRSVIVSISGAHIKSQNSIGVVAIKDKEVTQEDIERVLETAKA 110 Query: 143 RYLRDQKRTLLHSIITDYALDGKSGIKSPISMFADKIGIESHLLTVEKSSMKNLERAINR 202 + + + +LH I +Y LD + GIK+P+ M ++ +E H++T + ++NL + + R Sbjct: 111 VAIPNDQE-ILHVIPQEYILDDQEGIKNPLGMSGVRLEVEVHIITGSSTILRNLVKCVER 169 Query: 203 AHLSVERMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGGS 262 L V+ +V S AS +A L +DE ELG +ID+GGGTT IA++ G + Y VI IGG+ Sbjct: 170 CGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRYTKVIPIGGN 229 Query: 263 HVTNDLARGLSISLDNAERLKVMHPSIIPSLADEHDILSIPTIGNADHNDLVQVSRAMIS 322 H+T D+A+ L L+ AER+K+ + L + + IP++G +SR ++ Sbjct: 230 HITKDIAKALRTPLEEAERIKIKYGCASIPLEGPDENIEIPSVG---ERPPRSLSRKELA 286 Query: 323 RIIQARIEETFELIGER-IKKSGFSSLASKRIVLTGGASQVIGLQEMLRETICSNVRMGR 381 II+AR EE E++ ++ ++KSGF + IVLTGG +Q+ G+ E+ + + VR+G Sbjct: 287 EIIEARAEEILEIVKQKELRKSGFKEELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGL 346 Query: 382 PIGAVGLPFSARSPAFSTVIGLMIY 406 P GL P +ST +GL++Y Sbjct: 347 PQNIGGLTEDVNDPEYSTAVGLLLY 371 >gnl|CDD|181887 PRK09472, ftsA, cell division protein FtsA; Reviewed. Length = 420 Score = 203 bits (518), Expect = 7e-53 Identities = 121/423 (28%), Positives = 215/423 (50%), Gaps = 27/423 (6%) Query: 23 IVSALDIGSTKTVCMIGKLVPQNTTSLLSGRTHRIEVIGIGCQQSHGVKMGTIVDIDAVE 82 +V L+IG+ K ++G+++P + +IG+G S G+ G + D+++V Sbjct: 9 LVVGLEIGTAKVAALVGEVLPDG----------MVNIIGVGSCPSRGMDKGGVNDLESVV 58 Query: 83 RVVRQVVDAAERMAGFTVDNLLVNISAGCLKSQQHFVEMKIGWREVNDSDIQILLKSSFR 142 + V++ +D AE MA + ++ + +S + Q + I EV D++ ++ ++ Sbjct: 59 KCVQRAIDQAELMADCQISSVYLALSGKHISCQNEIGMVPISEEEVTQEDVENVVHTAKS 118 Query: 143 RYLRDQKRTLLHSIITDYALDGKSGIKSPISMFADKIGIESHLLTVEKSSMKNLERAINR 202 +RD+ R L H I +YA+D + GIK+P+ + ++ + HL+T KN+ +A+ R Sbjct: 119 VRVRDEHRIL-HVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHLITCHNDMAKNIVKAVER 177 Query: 203 AHLSVERMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGGS 262 L V++++ + AS A L +DE ELG V+D+GGGT IA++ G L + VI G+ Sbjct: 178 CGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGN 237 Query: 263 HVTNDLARGLSISLDNAERLKVMHPSIIPSLADEHDILSIPTIGNADHNDLVQVSRAMIS 322 VT+D+A +AE +KV H + S+ + + + +P++G L R ++ Sbjct: 238 VVTSDIAYAFGTPPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRPPRSL---QRQTLA 294 Query: 323 RIIQARIEETFELIGERI-------KKSGFSSLASKRIVLTGGASQVIGLQEMLRETICS 375 +I+ R E L+ E I ++ G + IVLTGGA+Q+ GL + + Sbjct: 295 EVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHT 354 Query: 376 NVRMGRPIGAVGLPFSARSPAFSTVIGLMIYPQLIAKEVDCGEEYSSFWSKRQFSPFINW 435 VR+G P+ GL A+ P +ST +GL+ Y KE E KR + +W Sbjct: 355 QVRIGAPLNITGLTDYAQEPYYSTAVGLLHY----GKESHLNGEAEV--EKRVTASVGSW 408 Query: 436 FRK 438 ++ Sbjct: 409 IKR 411 >gnl|CDD|129075 smart00842, FtsA, Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931. Length = 187 Score = 186 bits (476), Expect = 7e-48 Identities = 69/198 (34%), Positives = 110/198 (55%), Gaps = 11/198 (5%) Query: 24 VSALDIGSTKTVCMIGKLVPQNTTSLLSGRTHRIEVIGIGCQQSHGVKMGTIVDIDAVER 83 + LDIG++K ++ ++ I VIG+G S G++ G IVDI+A R Sbjct: 1 IVGLDIGTSKIKALVAEVDE----------DGEINVIGVGEVPSRGIRKGVIVDIEAAAR 50 Query: 84 VVRQVVDAAERMAGFTVDNLLVNISAGCLKSQQHFVEMKIGWREVNDSDIQILLKSSFRR 143 +R+ V+ AERMAG +D++ V IS LKS + I +E+ DI +L+++ Sbjct: 51 AIREAVEEAERMAGVKIDSVYVGISGRHLKSVNVSGVVAIPDKEITQEDIDRVLEAAKAV 110 Query: 144 YLRDQKRTLLHSIITDYALDGKSGIKSPISMFADKIGIESHLLTVEKSSMKNLERAINRA 203 L R +LH + +Y LDG+ GIK PI M ++ ++ H++T KS+++NLE+ + RA Sbjct: 111 ALPP-DREILHVLPQEYILDGQEGIKDPIGMSGVRLEVDVHVVTAPKSAIQNLEKCVERA 169 Query: 204 HLSVERMVASPYASGLAT 221 L V+ +V P AS A Sbjct: 170 GLEVDGIVLEPLASAEAV 187 >gnl|CDD|185038 PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional. Length = 267 Score = 58.3 bits (142), Expect = 4e-09 Identities = 23/52 (44%), Positives = 32/52 (61%) Query: 232 VVIDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDLARGLSISLDNAERLK 283 V+D+GGGTT I+I GK+VY GG+H++ LA IS + AE+ K Sbjct: 138 AVVDIGGGTTGISILKDGKVVYSADEPTGGTHMSLVLAGAYGISFEEAEQYK 189 >gnl|CDD|131581 TIGR02529, EutJ, ethanolamine utilization protein EutJ family protein. Length = 239 Score = 54.4 bits (131), Expect = 6e-08 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 11/113 (9%) Query: 177 DKIGIE-SHLLT-----VEKSSMKNLERAINRAHLSVERMVASPYASGLATLVDDEFELG 230 K+GIE +H T + K + I A + V ++ P A+ + + Sbjct: 55 QKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIKN----- 109 Query: 231 SVVIDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDLARGLSISLDNAERLK 283 V+D+GGGTT I+I KGK++Y GG+H++ LA IS + AE K Sbjct: 110 GAVVDVGGGTTGISILKKGKVIYSADEPTGGTHMSLVLAGAYGISFEEAEEYK 162 >gnl|CDD|184404 PRK13930, PRK13930, rod shape-determining protein MreB; Provisional. Length = 335 Score = 52.4 bits (127), Expect = 2e-07 Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 24/160 (15%) Query: 230 GSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDLAR------GLSISLDNAERLK 283 G++V+D+GGGTT++A+ G +VY + I + G + + + L I AE +K Sbjct: 153 GNMVVDIGGGTTEVAVISLGGIVYSESIRVAGDEMDEAIVQYVRRKYNLLIGERTAEEIK 212 Query: 284 VMHPSIIPSLADEHDILSIPTIGNADHNDLV-------QVSRAMISRIIQARIEETFELI 336 + I S + S+ G DLV ++S + + +++ E + Sbjct: 213 I----EIGSAYPLDEEESMEVRG----RDLVTGLPKTIEISSEEVREALAEPLQQIVEAV 264 Query: 337 G---ERIKKSGFSSLASKRIVLTGGASQVIGLQEMLRETI 373 E+ + + + IVLTGG + + GL ++L E Sbjct: 265 KSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET 304 >gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein. This family consists of bacterial MreB and Mbl proteins as well as two related archaeal sequences. MreB is known to be a rod shape-determining protein in bacteria and goes to make up the bacterial cytoskeleton. Genes coding for MreB/Mbl are only found in elongated bacteria, not in coccoid forms. It has been speculated that constituents of the eukaryotic cytoskeleton (tubulin, actin) may have evolved from prokaryotic precursor proteins closely related to today's bacterial proteins FtsZ and MreB/Mbl. Length = 327 Score = 52.2 bits (126), Expect = 3e-07 Identities = 38/162 (23%), Positives = 72/162 (44%), Gaps = 28/162 (17%) Query: 230 GSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDLAR------GLSISLDNAERLK 283 G++V+D+GGGTT++A+ G +V + + G + + + L I AER+K Sbjct: 146 GNMVVDIGGGTTEVAVISLGGIVTSKSVRVAGDEMDEAIIKYIRKKYNLLIGERTAERIK 205 Query: 284 VMHPSIIPSLADEHDILSIPTIGNADHNDLVQ-VSRAMI--SRIIQARIEETFELIGERI 340 + I S + + G DLV + + + S ++ ++E I E + Sbjct: 206 IE----IGSAYPTEEEEKMEIRG----RDLVTGLPKTIEISSEEVREALKEPVSAIVEAV 257 Query: 341 KK---------SGFSSLASKRIVLTGGASQVIGLQEMLRETI 373 K+ + + + IVLTGG + + GL ++L + Sbjct: 258 KEVLEKTPPELAA--DIVDRGIVLTGGGALLRGLDKLLSDET 297 >gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. Length = 333 Score = 47.4 bits (113), Expect = 7e-06 Identities = 58/248 (23%), Positives = 110/248 (44%), Gaps = 36/248 (14%) Query: 149 KRTLLHSIITDYALDGK------SGIKSPISMFADK--IGIESHLLTVEKSSMKNLERAI 200 R + +I D+ + K + S S F + I + S + VE+ ++K E A+ Sbjct: 65 IRPMKDGVIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVK--ESAL 122 Query: 201 NRAHLSVERMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIG 260 + V ++ P A+ + + E GS+V+D+GGGTT++A+ G +V I +G Sbjct: 123 SAGAREVY-LIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIVVSRSIRVG 181 Query: 261 G--------SHVTNDLARGLSISLDNAERLKVMHPSIIPSLADEHDILSIPTIGNADHND 312 G +++ L I AER+K+ S P L DE + + + Sbjct: 182 GDEFDEAIINYIRRTY--NLLIGEQTAERIKIEIGSAYP-LNDEPRKMEV-----RGRDL 233 Query: 313 LVQVSRAMI--SRIIQARIEETFELIGERIKKS-------GFSSLASKRIVLTGGASQVI 363 + + R + S ++ ++E I E +K++ + + + IVLTGG + + Sbjct: 234 VTGLPRTIEITSVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLR 293 Query: 364 GLQEMLRE 371 L ++L + Sbjct: 294 NLDKLLSK 301 >gnl|CDD|184401 PRK13927, PRK13927, rod shape-determining protein MreB; Provisional. Length = 334 Score = 42.8 bits (102), Expect = 2e-04 Identities = 54/202 (26%), Positives = 83/202 (41%), Gaps = 56/202 (27%) Query: 230 GSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDLAR------GLSISLDNAERLK 283 GS+V+D+GGGTT++A+ G +VY + +GG + L I AER+K Sbjct: 149 GSMVVDIGGGTTEVAVISLGGIVYSKSVRVGGDKFDEAIINYVRRNYNLLIGERTAERIK 208 Query: 284 VMHPSIIPSLADEHDILSIPTIGNADHNDLV------------QVSRAM---ISRIIQA- 327 + I S ++L + G DLV ++ A+ +S I++A Sbjct: 209 IE----IGSAYPGDEVLEMEVRG----RDLVTGLPKTITISSNEIREALQEPLSAIVEAV 260 Query: 328 RI--EETF-ELIGERIKKSGFSSLASKRIVLTGGASQVIGLQEMLRETICSNVRMGRPIG 384 ++ E+T EL + I G IVLTGG + + GL ++L E Sbjct: 261 KVALEQTPPELAAD-IVDRG--------IVLTGGGALLRGLDKLLSE------------- 298 Query: 385 AVGLPFS-ARSPAFSTVIGLMI 405 GLP A P G Sbjct: 299 ETGLPVHVAEDPLTCVARGTGK 320 >gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH; Provisional. Length = 335 Score = 43.0 bits (101), Expect = 2e-04 Identities = 50/182 (27%), Positives = 83/182 (45%), Gaps = 28/182 (15%) Query: 210 MVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDLA 269 ++ P A+ + + + + +VV+D+GGGTT++AI G +V I IGG + D+ Sbjct: 131 LIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVVSCHSIRIGGDQLDEDIV 190 Query: 270 R------GLSISLDNAERLKVMHPSIIPSLADEHDILSIPTIGNADHNDLVQVSRAMI-- 321 L I AE++K+ I EH+ ++ G DLV I Sbjct: 191 SFVRKKYNLLIGERTAEQVKME----IGYALIEHEPETMEVRG----RDLVTGLPKTITL 242 Query: 322 -SRIIQARIEETFELIGERIKK---------SGFSSLASKRIVLTGGASQVIGLQEMLRE 371 S+ IQ + E+ I E I+ SG + + ++LTGG + + G++E L E Sbjct: 243 ESKEIQGAMRESLLHILEAIRATLEDCPPELSG--DIVDRGVILTGGGALLNGIKEWLSE 300 Query: 372 TI 373 I Sbjct: 301 EI 302 >gnl|CDD|182674 PRK10719, eutA, reactivating factor for ethanolamine ammonia lyase; Provisional. Length = 475 Score = 39.5 bits (93), Expect = 0.002 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 14/94 (14%) Query: 234 IDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDLARGLSISLDNAERLKVMHPSIIPSL 293 ID+GGGT A+FD GK++ + +GG I D+ R+ + P L Sbjct: 151 IDIGGGTANYALFDAGKVIDTACLNVGGRL----------IETDSQGRVTYISPPGQMIL 200 Query: 294 ADEHDILSIPTIGN-ADHNDLVQVSRAMISRIIQ 326 + L+I T G L QV+R M +++ Sbjct: 201 DELG--LAI-TDGRSLTGEQLQQVTRRMAELLVE 231 >gnl|CDD|148092 pfam06277, EutA, Ethanolamine utilisation protein EutA. This family consists of several bacterial EutA ethanolamine utilisation proteins. The EutA protein is thought to protect the lyase (EutBC) from inhibition by CNB12. Length = 473 Score = 39.5 bits (93), Expect = 0.002 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 16/96 (16%) Query: 234 IDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDLARGLSISLDNAERLKVMHPSIIPSL 293 ID+GGGTT +A+F+ G+ VI + L I +D R+ + P + Sbjct: 148 IDIGGGTTNLALFENGE-----VIDTACLDIGGRL-----IKIDPTGRITYISPKGRRLI 197 Query: 294 ADE-HDILSIPTIGN-ADHNDLVQVSRAMISRIIQA 327 A+ ++ +G+ A L QV R M + + Sbjct: 198 AELGLEL----EVGDRATPEQLDQVCREMAQLLEEV 229 >gnl|CDD|162645 TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. Length = 599 Score = 39.2 bits (92), Expect = 0.002 Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 31/190 (16%) Query: 203 AHLSVERMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGG- 261 A L+V R++ P A+ +A +D E V D+GGGT ++I K V+ +V+A GG Sbjct: 155 AGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVF-EVLATGGD 213 Query: 262 -------------------SHVTNDLARG-LSISLDNAERLKVMHPSIIPSLADEHDILS 301 ++ DL + L A K +L D + Sbjct: 214 SALGGDDFDHALAKWILKQLGISADLNPEDQRLLLQAARAAKE-------ALTDAESVEV 266 Query: 302 IPTIGNADHNDLVQVSRAMISRIIQARIEETFELIGERIKKSGFSSLASKRIVLTGGASQ 361 T+ D +++R +IQ +++T + ++ +G S K +VL GG+++ Sbjct: 267 DFTLDGKDF--KGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTR 324 Query: 362 VIGLQEMLRE 371 + ++ + E Sbjct: 325 MPLVRRAVAE 334 >gnl|CDD|162237 TIGR01175, pilM, type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria. Length = 348 Score = 39.4 bits (92), Expect = 0.002 Identities = 35/181 (19%), Positives = 70/181 (38%), Gaps = 33/181 (18%) Query: 232 VVIDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDLARGLSISLDNAERLKVMHPSIIP 291 ++D+G ++ + + G++++ + G +T++L+R ++ + A K Sbjct: 191 ALVDIGATSSTLNLLHPGRMLFTREVPFGTRQLTSELSRAYGLNPEEAGEAKQQG----- 245 Query: 292 SLADEHDILSIPTIGNADHNDLVQVSRAMISRIIQARIEETFELIGERIKKSGFSSLASK 351 L +D P + +LV I R +Q F SG +SL Sbjct: 246 GLPLLYD----PEVLRRFKGELVD----EIRRSLQ------FFTAQ-----SGTNSLD-- 284 Query: 352 RIVLTGGASQVIGLQEMLRETICSNVRMGRPIGAVGLPFSARS-------PAFSTVIGLM 404 +VL GG + + GL + + + + P + L + PA T +GL Sbjct: 285 GLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMALDAKVDAGRLAVDAPALMTALGLA 344 Query: 405 I 405 + Sbjct: 345 L 345 >gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional. Length = 653 Score = 39.0 bits (91), Expect = 0.003 Identities = 48/199 (24%), Positives = 92/199 (46%), Gaps = 38/199 (19%) Query: 203 AHLSVERMVASPYASGLATLVD-DEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGG 261 A L V R++ P A+ LA +D + E +V D+GGGT ++I G V+ +V A G Sbjct: 159 AGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVF-EVKATAG 217 Query: 262 S-HVTND---------------LARGLSISLDN---------AERLKVMHPSIIPSLADE 296 + H+ D G+ +S D AE+ K+ S++ + Sbjct: 218 NNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTS--- 274 Query: 297 HDILSIPTIGNADHND----LVQVSRAMISRIIQARIEETFELIGERIKKSGFSSLASKR 352 +++P I AD ++++RA + + +E T E + + +K +G R Sbjct: 275 ---INLPFI-TADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDR 330 Query: 353 IVLTGGASQVIGLQEMLRE 371 ++L GG++++ +QE +++ Sbjct: 331 VILVGGSTRIPAVQEAIQK 349 >gnl|CDD|184402 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional. Length = 336 Score = 38.7 bits (91), Expect = 0.003 Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 36/164 (21%) Query: 230 GSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDLAR------GLSISLDNAERLK 283 G++V+D+GGGTT IA+ G +V I + G + R L I AE +K Sbjct: 148 GNMVVDIGGGTTDIAVLSLGGIVTSSSIKVAGDKFDEAIIRYIRKKYKLLIGERTAEEIK 207 Query: 284 VMHPSIIPSLADE------HDILS-IPTIGNADHNDLVQVSRAMISRIIQARIEETFELI 336 + + P +E D+++ +P + V+ S I+ ++E I Sbjct: 208 IKIGTAFPGAREEEMEIRGRDLVTGLP--------KTITVT----SEEIREALKEPVSAI 255 Query: 337 GERIKK---------SGFSSLASKRIVLTGGASQVIGLQEMLRE 371 + +K S + + + I++TGG + + GL ++L E Sbjct: 256 VQAVKSVLERTPPELS--ADIIDRGIIMTGGGALLHGLDKLLAE 297 >gnl|CDD|167230 PRK01433, hscA, chaperone protein HscA; Provisional. Length = 595 Score = 36.4 bits (84), Expect = 0.016 Identities = 35/177 (19%), Positives = 85/177 (48%), Gaps = 19/177 (10%) Query: 203 AHLSVERMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGGS 262 A V R++A P A+ A ++ + +V D+GGGT ++I + + ++ VIA G Sbjct: 167 AGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIF-QVIATNGD 225 Query: 263 HVTNDLARGLSISLDNAERLKVMHPSIIPSLADEHDILSI-----PTIGNAD--HNDLVQ 315 ++ + ++ + + + L + D L + T+ D +ND + Sbjct: 226 NM---------LGGNDIDVVITQYLCNKFDLPNSIDTLQLAKKAKETLTYKDSFNNDNIS 276 Query: 316 VSRAMISRIIQARIEETFELIGERIKKSGFSSLASKRIVLTGGASQVIGLQEMLRET 372 +++ + ++I +E T + E ++++G ++ ++L GGA+++ +++ L + Sbjct: 277 INKQTLEQLILPLVERTINIAQECLEQAGNPNI--DGVILVGGATRIPLIKDELYKA 331 >gnl|CDD|149788 pfam08841, DDR, Diol dehydratase reactivase ATPase-like domain. Diol dehydratase (DDH, EC:4.2.1.28) and its isofunctional homologue glycerol dehydratase (GDH, EC.4.2.1.30) are enzymes which catalyse the conversion of glycerol 1,2-propanediol, and 1,2-ethanediol to aldehydes. These reactions require coenzyme B12. Cleavage of the Co-C bond of coenzyme B12 by substrates or coenzyme analogues results in inactivation during which coenzyme B12 remains tightly bound to the apoenzyme. This family comprises of the large subunit of the diol dehydratase and glycerol dehydratase reactivating factors whose function is to reactivate the holoenzyme by exchange of a damaged cofactor for intact coenzyme. Length = 332 Score = 35.4 bits (82), Expect = 0.026 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 4/121 (3%) Query: 165 KSGIKSPISMFADKIGIESHLLTVEKSSMKNLERAI-NRAHLSVERMVASPYASGLATLV 223 + G+ SM +GI + ++ + M + + + VE A+ L L Sbjct: 71 RGGLAGEFSM-EQAVGIAA-MVKADHLQMAIIAAELEEELGVPVEIGGVEAEAAILGALT 128 Query: 224 DDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDLARGLSIS-LDNAERL 282 ++D+G G+T +I + V +A G VT + L + AE + Sbjct: 129 TPGTPKPLAILDLGAGSTDASIINAEGTVTATHLAGAGEMVTMLINSELGLEDRALAEDI 188 Query: 283 K 283 K Sbjct: 189 K 189 >gnl|CDD|162816 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. Length = 595 Score = 33.1 bits (76), Expect = 0.13 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%) Query: 203 AHLSVERMVASPYASGLATLVDDEFELGSV-VIDMGGGTTKIAIFDKGKLVYMDVIAIGG 261 A L V R++ P A+ LA +D + + V D+GGGT ++I + G V+ +V++ G Sbjct: 156 AGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVF-EVLSTAG 214 >gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional. Length = 668 Score = 31.9 bits (73), Expect = 0.36 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 203 AHLSVERMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGG 261 A L VER++ P A+ LA +D +V D+GGGT +++ + G V+ +V A G Sbjct: 161 AGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVF-EVKATSG 218 >gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional. Length = 657 Score = 31.6 bits (71), Expect = 0.40 Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 23/191 (12%) Query: 203 AHLSVERMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGG- 261 A L+V R+V P A+ LA +D + V D+GGGT I++ + V+ +V A G Sbjct: 186 AGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVF-EVKATNGD 244 Query: 262 -------------SHVTNDLARGLSISLDNA----ERLKVMHPSIIPSLADEHDI-LSIP 303 ++ + + I L +R++ L+ + +++P Sbjct: 245 THLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLP 304 Query: 304 TI-GNADHNDLVQ--VSRAMISRIIQARIEETFELIGERIKKSGFSSLASKRIVLTGGAS 360 I NAD +Q +SR+ I Q IE + + +K +G +VL GG + Sbjct: 305 FITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMT 364 Query: 361 QVIGLQEMLRE 371 ++ + E +++ Sbjct: 365 RMPKVVEEVKK 375 >gnl|CDD|128564 smart00268, ACTIN, Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily. Length = 373 Score = 31.5 bits (72), Expect = 0.50 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 11/65 (16%) Query: 211 VASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDV--IAIGGSHVTNDL 268 V S YASG T +VID G G T + G ++ + I I G +T+ L Sbjct: 134 VLSLYASGRTT---------GLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDLTDYL 184 Query: 269 ARGLS 273 LS Sbjct: 185 KELLS 189 >gnl|CDD|162523 TIGR01768, GGGP-family, geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. Length = 223 Score = 30.9 bits (70), Expect = 0.64 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 13/94 (13%) Query: 255 DVIAIGGS-HVTNDLARGLSISLDNAERLKVMHPSIIPSLADEHDILSIPTIGNADHNDL 313 D I IGGS VT + L +L ++ PS +++ + D L P++ N+D Sbjct: 29 DAILIGGSQGVTYEKTDTLIEALRRYGLPIILFPSNPTNVSRDADALFFPSVLNSDDPYW 88 Query: 314 VQVSRAMISRIIQARIE--ETFELIGERIKKSGF 345 II A+IE F+ IGE I G+ Sbjct: 89 ----------IIGAQIEAAPKFKKIGEEIIPEGY 112 >gnl|CDD|129344 TIGR00241, CoA_E_activ, CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase. Length = 248 Score = 30.9 bits (70), Expect = 0.69 Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 27/166 (16%) Query: 233 VIDMGGGTTKIAIFDKGKL---VYMDVIAIGGSHVTNDLARGLSISLD--NAERLKVMHP 287 VID+GG +K+ D GK+ D A G AR L +S++ + K Sbjct: 95 VIDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRLGVSVEELGSLAEKADRK 154 Query: 288 SIIPSLA---DEHDILSIPTIGNADHNDLVQVSRAMISRIIQARIEETFELIGERIKKSG 344 + I S+ E +++S+ G + L V ++ R+ E++ +R+K Sbjct: 155 AKISSMCTVFAESELISLLAAGVKKEDILAGVYESIAERV--------AEML-QRLK--- 202 Query: 345 FSSLASKRIVLTGGASQVIGLQEMLRETICSNVRMGRP---IGAVG 387 IV TGG S+ GL + L + + V +GAVG Sbjct: 203 ----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVG 244 >gnl|CDD|185292 PRK15394, PRK15394, 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional. Length = 296 Score = 30.3 bits (69), Expect = 0.94 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 4/36 (11%) Query: 36 CMIGKLVPQNTTSLLSGRTHRIEVIG----IGCQQS 67 C + +L+P + +L G+ R + G +GCQQ Sbjct: 260 CPLSELLPDDLETLPLGKVVRGNIPGREGWLGCQQI 295 >gnl|CDD|162532 TIGR01780, SSADH, succinate-semialdehyde dehydrogenase. SSADH enzyme belongs to the aldehyde dehydrogenase family (pfam00171), sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase. Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family (PS00687, PS00070). Length = 448 Score = 30.1 bits (68), Expect = 1.1 Identities = 12/43 (27%), Positives = 23/43 (53%) Query: 54 THRIEVIGIGCQQSHGVKMGTIVDIDAVERVVRQVVDAAERMA 96 ++ + +G GV G +++ AVE+V + + DA E+ A Sbjct: 282 AEAVKKLKVGNGLDEGVTQGPLINEKAVEKVEKHIADAVEKGA 324 >gnl|CDD|178726 PLN03184, PLN03184, chloroplast Hsp70; Provisional. Length = 673 Score = 30.2 bits (68), Expect = 1.2 Identities = 19/65 (29%), Positives = 34/65 (52%) Query: 203 AHLSVERMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGGS 262 A L V R++ P A+ LA + + +V D+GGGT +++ + G V+ + G + Sbjct: 198 AGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDT 257 Query: 263 HVTND 267 H+ D Sbjct: 258 HLGGD 262 >gnl|CDD|183971 PRK13317, PRK13317, pantothenate kinase; Provisional. Length = 277 Score = 29.9 bits (68), Expect = 1.2 Identities = 8/18 (44%), Positives = 10/18 (55%) Query: 234 IDMGGGTTKIAIFDKGKL 251 ID GG TKI ++ K Sbjct: 7 IDAGGTLTKIVYLEEKKQ 24 >gnl|CDD|183673 PRK12676, PRK12676, bifunctional inositol-1 monophosphatase/fructose-1,6-bisphosphatase; Reviewed. Length = 263 Score = 29.5 bits (67), Expect = 1.6 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 5/52 (9%) Query: 337 GERIKKSGFSSLASKRIVLTGGASQVIGLQEMLRETICSNVRMGRPIGAVGL 388 G+ IK S S L + + G + + VR R +GA+ L Sbjct: 140 GKPIKVSKTSELNESAVSIYGYRRGKERTVK-----LGRKVRRVRILGAIAL 186 >gnl|CDD|183274 PRK11678, PRK11678, putative chaperone; Provisional. Length = 450 Score = 28.3 bits (64), Expect = 4.1 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 12/52 (23%) Query: 196 LERAINRAHLSVERMVA---SPYASGL---ATLVDDEFELGSVVIDMGGGTT 241 LERA RA + V P A+GL ATL +++ L V+D+GGGTT Sbjct: 176 LERAAKRAGF---KDVEFQFEPVAAGLDFEATLTEEKRVL---VVDIGGGTT 221 >gnl|CDD|163200 TIGR03285, methan_mark_14, putative methanogenesis marker protein 14. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Length = 445 Score = 28.2 bits (63), Expect = 4.2 Identities = 20/101 (19%), Positives = 43/101 (42%), Gaps = 34/101 (33%) Query: 22 YIVSALDIGSTKTVCMIGKLVPQNTTSLLSGRTHRIEVIGIGCQQSHGVKMGTIVDI--- 78 YIV+++++G+T T C++ T+L +G+T+ + V+M V Sbjct: 2 YIVASVELGNTTTKCIL------TATNLKTGKTYLLNKC---------VRMTRDVRPPRS 46 Query: 79 ----------------DAVERVVRQVVDAAERMAGFTVDNL 103 ++V +V+ + + + AG +D+L Sbjct: 47 GEEVFGKTVWGVELTRESVAELVKDTLKESLKKAGLDIDDL 87 >gnl|CDD|129849 TIGR00766, TIGR00766, ribonuclease, putative. This family shows similarity to ribonuclease BN. Length = 263 Score = 27.9 bits (62), Expect = 4.7 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%) Query: 383 IGAVGLPFSARSP---AFSTVIGLMIY 406 + + LP RSP AF +V+GLM++ Sbjct: 216 VMTIYLPILLRSPSGAAFGSVLGLMVF 242 >gnl|CDD|183973 PRK13320, PRK13320, pantothenate kinase; Reviewed. Length = 244 Score = 27.9 bits (63), Expect = 5.0 Identities = 10/20 (50%), Positives = 16/20 (80%) Query: 233 VIDMGGGTTKIAIFDKGKLV 252 VID+G TTK+A+F+ +L+ Sbjct: 6 VIDIGNTTTKLAVFEGDELL 25 >gnl|CDD|181101 PRK07742, PRK07742, phosphate butyryltransferase; Validated. Length = 299 Score = 28.1 bits (63), Expect = 5.2 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Query: 274 ISLDNA-ERLKVMHPSIIPSLADEHDILSIPTI--GNADHNDLVQVSRAMISRII 325 ++LDNA ++ H I+ +A + DIL +PTI GN + LV + A + +I Sbjct: 213 LALDNAVSQIAAEHKGIVSDVAGKADILLVPTIEAGNVLYKSLVYFADAKVGAMI 267 >gnl|CDD|173154 PRK14691, PRK14691, 3-oxoacyl-(acyl carrier protein) synthase II; Provisional. Length = 342 Score = 27.8 bits (61), Expect = 5.3 Identities = 11/26 (42%), Positives = 19/26 (73%) Query: 93 ERMAGFTVDNLLVNISAGCLKSQQHF 118 +R++ FTV + LVN++AG + + HF Sbjct: 55 KRLSPFTVPSFLVNLAAGHVSIKHHF 80 >gnl|CDD|183972 PRK13318, PRK13318, pantothenate kinase; Reviewed. Length = 258 Score = 27.8 bits (63), Expect = 5.5 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 32/106 (30%) Query: 191 SSMKNLERAINRAHLSVE-RMVASP-YASGLATLVDDEFELGS----------------- 231 S M +LER + + ++E +V P +G+ VD+ E+G+ Sbjct: 68 SVMHSLERMCRK-YFNIEPLVVVGPGVKTGINIKVDNPKEVGADRIVNAVAAYELYGGPL 126 Query: 232 VVIDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDLARGLSISLD 277 +V+D G TT DV++ G ++ +A G++IS D Sbjct: 127 IVVDFGTATT------------FDVVSAKGEYLGGVIAPGINISAD 160 >gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional. Length = 438 Score = 27.8 bits (62), Expect = 5.7 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%) Query: 192 SMKNLERAINRAHLSVERMVASPYASGLATLVD-DEFELGSVVI 234 S+ LE I+ H V V Y + + VD ++ E G V+ Sbjct: 106 SVGTLEEIIDENHAIVSSSVGPEYYVNILSFVDKEQLEPGCSVL 149 >gnl|CDD|185598 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional. Length = 663 Score = 27.5 bits (61), Expect = 7.5 Identities = 17/45 (37%), Positives = 24/45 (53%) Query: 203 AHLSVERMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFD 247 A L V R++ P A+ LA +D V D+GGGT I+I + Sbjct: 200 AGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILE 244 >gnl|CDD|162399 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512. Length = 556 Score = 27.2 bits (61), Expect = 8.1 Identities = 32/152 (21%), Positives = 58/152 (38%), Gaps = 49/152 (32%) Query: 169 KSPISMFADK-----------IGIESHLLTVEKSSMKNLERAINRAHLSVERMVASPYAS 217 K+PI AD+ I + + ++ + ++ L RA+ +V +VA P A Sbjct: 159 KAPIQRLADRIASYYVPAVLAIALLTFVVWLALGALGALYRAL-----AV-LVVACPCAL 212 Query: 218 GLAT----------------LVDDEFELGSVVIDMGGGTTKIAIFDK------GKLVYMD 255 GLAT L+ G ++ K +FDK GK +D Sbjct: 213 GLATPVAILVAIGVAARRGILIK-----GGDALEK-LAKVKTVVFDKTGTLTTGKPTVVD 266 Query: 256 VIAIGGSHVTNDLARGLSISLDNAERLKVMHP 287 V + + ++ + L+ +L+ + HP Sbjct: 267 VEPLDDASISEEELLALAAALEQSSS----HP 294 >gnl|CDD|178963 PRK00290, dnaK, molecular chaperone DnaK; Provisional. Length = 627 Score = 27.4 bits (62), Expect = 8.3 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 5/45 (11%) Query: 203 AHLSVERMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFD 247 A L V R++ P A+ LA +D + + +V D+GGGT FD Sbjct: 159 AGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGT-----FD 198 >gnl|CDD|179678 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated. Length = 450 Score = 27.4 bits (62), Expect = 8.6 Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 3/44 (6%) Query: 308 ADHNDLVQVSRAMISRIIQARIEET---FELIGERIKKSGFSSL 348 AD D + ++ M+ +++ +E E + R+ K L Sbjct: 241 ADLEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERL 284 >gnl|CDD|184393 PRK13917, PRK13917, plasmid segregation protein ParM; Provisional. Length = 344 Score = 27.2 bits (60), Expect = 8.9 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%) Query: 222 LVDDEFELGSV-VIDMGGGTTKIAIFDKGKLV 252 + D FE G V VID G GTT + K V Sbjct: 177 VADKAFEEGKVSVIDFGSGTTDLDTIQNLKRV 208 >gnl|CDD|162813 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531 Score = 27.0 bits (60), Expect = 9.1 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 14/89 (15%) Query: 30 GSTKTVCMIGKLVPQNTTSLLSGRTHRIEVIGIGCQQSH--------GVKMGTIVDIDAV 81 G+T TV +IG+L+ Q +L G RI G + +K VD + + Sbjct: 89 GTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELL 148 Query: 82 ERVVRQVV------DAAERMAGFTVDNLL 104 V R + D A+++ VD +L Sbjct: 149 LNVARTSLRTKLPIDLADQLTEIVVDAVL 177 >gnl|CDD|179527 PRK03011, PRK03011, butyrate kinase; Provisional. Length = 358 Score = 27.0 bits (61), Expect = 9.6 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 4/42 (9%) Query: 233 VIDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDLARGLSI 274 VI+ G +TKIA+F+ K ++ + + H +L + +I Sbjct: 6 VINPGSTSTKIAVFEDEKPIFEETL----RHSAEELEKFKTI 43 >gnl|CDD|140227 PTZ00200, PTZ00200, cysteine proteinase; Provisional. Length = 448 Score = 27.0 bits (60), Expect = 9.8 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 10/78 (12%) Query: 127 EVNDSDIQILLKSSFRRYLRDQKRTLLHSIITDY-ALDGKSGIKSPIS----MFADKIGI 181 V DS I L SSFRR R ++ ++ ++ + A+ G +S + + K + Sbjct: 22 SVRDSTISTLS-SSFRRISRKKRVIIISFLVFLFLAIGGSIVSYVLVSKSKMVKSFKSDL 80 Query: 182 ESHLLTVEKSSMKNLERA 199 E H+ L+++ Sbjct: 81 EEHI----DKDFPRLDKS 94 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.321 0.135 0.383 Gapped Lambda K H 0.267 0.0811 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 7,082,222 Number of extensions: 467508 Number of successful extensions: 1137 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1117 Number of HSP's successfully gapped: 57 Length of query: 440 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 344 Effective length of database: 3,920,105 Effective search space: 1348516120 Effective search space used: 1348516120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (26.4 bits)