RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781177|ref|YP_003065590.1| cell division protein
[Candidatus Liberibacter asiaticus str. psy62]
(440 letters)
>gnl|CDD|162236 TIGR01174, ftsA, cell division protein FtsA. This bacterial cell
division protein interacts with FtsZ, the bacterial
homolog of tubulin. It is an ATP-binding protein and
shows structural similarities to actin and heat shock
cognate protein 70.
Length = 371
Score = 291 bits (746), Expect = 4e-79
Identities = 128/385 (33%), Positives = 221/385 (57%), Gaps = 15/385 (3%)
Query: 23 IVSALDIGSTKTVCMIGKLVPQNTTSLLSGRTHRIEVIGIGCQQSHGVKMGTIVDIDAVE 82
++ LDIG++K ++ +++ + +IG+G S G+K G I DI+A
Sbjct: 1 LIVGLDIGTSKICAIVAEVLEDG----------ELNIIGVGTHPSRGIKKGVINDIEAAV 50
Query: 83 RVVRQVVDAAERMAGFTVDNLLVNISAGCLKSQQHFVEMKIGWREVNDSDIQILLKSSFR 142
+++ ++AAE MAG + +++V+IS +KSQ + I +EV DI+ +L+++
Sbjct: 51 GSIQRAIEAAELMAGCEIRSVIVSISGAHIKSQNSIGVVAIKDKEVTQEDIERVLETAKA 110
Query: 143 RYLRDQKRTLLHSIITDYALDGKSGIKSPISMFADKIGIESHLLTVEKSSMKNLERAINR 202
+ + + +LH I +Y LD + GIK+P+ M ++ +E H++T + ++NL + + R
Sbjct: 111 VAIPNDQE-ILHVIPQEYILDDQEGIKNPLGMSGVRLEVEVHIITGSSTILRNLVKCVER 169
Query: 203 AHLSVERMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGGS 262
L V+ +V S AS +A L +DE ELG +ID+GGGTT IA++ G + Y VI IGG+
Sbjct: 170 CGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRYTKVIPIGGN 229
Query: 263 HVTNDLARGLSISLDNAERLKVMHPSIIPSLADEHDILSIPTIGNADHNDLVQVSRAMIS 322
H+T D+A+ L L+ AER+K+ + L + + IP++G +SR ++
Sbjct: 230 HITKDIAKALRTPLEEAERIKIKYGCASIPLEGPDENIEIPSVG---ERPPRSLSRKELA 286
Query: 323 RIIQARIEETFELIGER-IKKSGFSSLASKRIVLTGGASQVIGLQEMLRETICSNVRMGR 381
II+AR EE E++ ++ ++KSGF + IVLTGG +Q+ G+ E+ + + VR+G
Sbjct: 287 EIIEARAEEILEIVKQKELRKSGFKEELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGL 346
Query: 382 PIGAVGLPFSARSPAFSTVIGLMIY 406
P GL P +ST +GL++Y
Sbjct: 347 PQNIGGLTEDVNDPEYSTAVGLLLY 371
>gnl|CDD|181887 PRK09472, ftsA, cell division protein FtsA; Reviewed.
Length = 420
Score = 203 bits (518), Expect = 7e-53
Identities = 121/423 (28%), Positives = 215/423 (50%), Gaps = 27/423 (6%)
Query: 23 IVSALDIGSTKTVCMIGKLVPQNTTSLLSGRTHRIEVIGIGCQQSHGVKMGTIVDIDAVE 82
+V L+IG+ K ++G+++P + +IG+G S G+ G + D+++V
Sbjct: 9 LVVGLEIGTAKVAALVGEVLPDG----------MVNIIGVGSCPSRGMDKGGVNDLESVV 58
Query: 83 RVVRQVVDAAERMAGFTVDNLLVNISAGCLKSQQHFVEMKIGWREVNDSDIQILLKSSFR 142
+ V++ +D AE MA + ++ + +S + Q + I EV D++ ++ ++
Sbjct: 59 KCVQRAIDQAELMADCQISSVYLALSGKHISCQNEIGMVPISEEEVTQEDVENVVHTAKS 118
Query: 143 RYLRDQKRTLLHSIITDYALDGKSGIKSPISMFADKIGIESHLLTVEKSSMKNLERAINR 202
+RD+ R L H I +YA+D + GIK+P+ + ++ + HL+T KN+ +A+ R
Sbjct: 119 VRVRDEHRIL-HVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHLITCHNDMAKNIVKAVER 177
Query: 203 AHLSVERMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGGS 262
L V++++ + AS A L +DE ELG V+D+GGGT IA++ G L + VI G+
Sbjct: 178 CGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGN 237
Query: 263 HVTNDLARGLSISLDNAERLKVMHPSIIPSLADEHDILSIPTIGNADHNDLVQVSRAMIS 322
VT+D+A +AE +KV H + S+ + + + +P++G L R ++
Sbjct: 238 VVTSDIAYAFGTPPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRPPRSL---QRQTLA 294
Query: 323 RIIQARIEETFELIGERI-------KKSGFSSLASKRIVLTGGASQVIGLQEMLRETICS 375
+I+ R E L+ E I ++ G + IVLTGGA+Q+ GL + +
Sbjct: 295 EVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHT 354
Query: 376 NVRMGRPIGAVGLPFSARSPAFSTVIGLMIYPQLIAKEVDCGEEYSSFWSKRQFSPFINW 435
VR+G P+ GL A+ P +ST +GL+ Y KE E KR + +W
Sbjct: 355 QVRIGAPLNITGLTDYAQEPYYSTAVGLLHY----GKESHLNGEAEV--EKRVTASVGSW 408
Query: 436 FRK 438
++
Sbjct: 409 IKR 411
>gnl|CDD|129075 smart00842, FtsA, Cell division protein FtsA. FtsA is essential
for bacterial cell division, and co-localizes to the
septal ring with FtsZ. It has been suggested that the
interaction of FtsA-FtsZ has arisen through coevolution
in different bacterial strains PUBMED:9352931.
Length = 187
Score = 186 bits (476), Expect = 7e-48
Identities = 69/198 (34%), Positives = 110/198 (55%), Gaps = 11/198 (5%)
Query: 24 VSALDIGSTKTVCMIGKLVPQNTTSLLSGRTHRIEVIGIGCQQSHGVKMGTIVDIDAVER 83
+ LDIG++K ++ ++ I VIG+G S G++ G IVDI+A R
Sbjct: 1 IVGLDIGTSKIKALVAEVDE----------DGEINVIGVGEVPSRGIRKGVIVDIEAAAR 50
Query: 84 VVRQVVDAAERMAGFTVDNLLVNISAGCLKSQQHFVEMKIGWREVNDSDIQILLKSSFRR 143
+R+ V+ AERMAG +D++ V IS LKS + I +E+ DI +L+++
Sbjct: 51 AIREAVEEAERMAGVKIDSVYVGISGRHLKSVNVSGVVAIPDKEITQEDIDRVLEAAKAV 110
Query: 144 YLRDQKRTLLHSIITDYALDGKSGIKSPISMFADKIGIESHLLTVEKSSMKNLERAINRA 203
L R +LH + +Y LDG+ GIK PI M ++ ++ H++T KS+++NLE+ + RA
Sbjct: 111 ALPP-DREILHVLPQEYILDGQEGIKDPIGMSGVRLEVDVHVVTAPKSAIQNLEKCVERA 169
Query: 204 HLSVERMVASPYASGLAT 221
L V+ +V P AS A
Sbjct: 170 GLEVDGIVLEPLASAEAV 187
>gnl|CDD|185038 PRK15080, PRK15080, ethanolamine utilization protein EutJ;
Provisional.
Length = 267
Score = 58.3 bits (142), Expect = 4e-09
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 232 VVIDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDLARGLSISLDNAERLK 283
V+D+GGGTT I+I GK+VY GG+H++ LA IS + AE+ K
Sbjct: 138 AVVDIGGGTTGISILKDGKVVYSADEPTGGTHMSLVLAGAYGISFEEAEQYK 189
>gnl|CDD|131581 TIGR02529, EutJ, ethanolamine utilization protein EutJ family
protein.
Length = 239
Score = 54.4 bits (131), Expect = 6e-08
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 11/113 (9%)
Query: 177 DKIGIE-SHLLT-----VEKSSMKNLERAINRAHLSVERMVASPYASGLATLVDDEFELG 230
K+GIE +H T + K + I A + V ++ P A+ + +
Sbjct: 55 QKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIKN----- 109
Query: 231 SVVIDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDLARGLSISLDNAERLK 283
V+D+GGGTT I+I KGK++Y GG+H++ LA IS + AE K
Sbjct: 110 GAVVDVGGGTTGISILKKGKVIYSADEPTGGTHMSLVLAGAYGISFEEAEEYK 162
>gnl|CDD|184404 PRK13930, PRK13930, rod shape-determining protein MreB;
Provisional.
Length = 335
Score = 52.4 bits (127), Expect = 2e-07
Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 24/160 (15%)
Query: 230 GSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDLAR------GLSISLDNAERLK 283
G++V+D+GGGTT++A+ G +VY + I + G + + + L I AE +K
Sbjct: 153 GNMVVDIGGGTTEVAVISLGGIVYSESIRVAGDEMDEAIVQYVRRKYNLLIGERTAEEIK 212
Query: 284 VMHPSIIPSLADEHDILSIPTIGNADHNDLV-------QVSRAMISRIIQARIEETFELI 336
+ I S + S+ G DLV ++S + + +++ E +
Sbjct: 213 I----EIGSAYPLDEEESMEVRG----RDLVTGLPKTIEISSEEVREALAEPLQQIVEAV 264
Query: 337 G---ERIKKSGFSSLASKRIVLTGGASQVIGLQEMLRETI 373
E+ + + + IVLTGG + + GL ++L E
Sbjct: 265 KSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET 304
>gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein. This family consists of
bacterial MreB and Mbl proteins as well as two related
archaeal sequences. MreB is known to be a rod
shape-determining protein in bacteria and goes to make
up the bacterial cytoskeleton. Genes coding for MreB/Mbl
are only found in elongated bacteria, not in coccoid
forms. It has been speculated that constituents of the
eukaryotic cytoskeleton (tubulin, actin) may have
evolved from prokaryotic precursor proteins closely
related to today's bacterial proteins FtsZ and MreB/Mbl.
Length = 327
Score = 52.2 bits (126), Expect = 3e-07
Identities = 38/162 (23%), Positives = 72/162 (44%), Gaps = 28/162 (17%)
Query: 230 GSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDLAR------GLSISLDNAERLK 283
G++V+D+GGGTT++A+ G +V + + G + + + L I AER+K
Sbjct: 146 GNMVVDIGGGTTEVAVISLGGIVTSKSVRVAGDEMDEAIIKYIRKKYNLLIGERTAERIK 205
Query: 284 VMHPSIIPSLADEHDILSIPTIGNADHNDLVQ-VSRAMI--SRIIQARIEETFELIGERI 340
+ I S + + G DLV + + + S ++ ++E I E +
Sbjct: 206 IE----IGSAYPTEEEEKMEIRG----RDLVTGLPKTIEISSEEVREALKEPVSAIVEAV 257
Query: 341 KK---------SGFSSLASKRIVLTGGASQVIGLQEMLRETI 373
K+ + + + IVLTGG + + GL ++L +
Sbjct: 258 KEVLEKTPPELAA--DIVDRGIVLTGGGALLRGLDKLLSDET 297
>gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family.
A close homolog is found in the Archaeon
Methanobacterium thermoautotrophicum, and a more distant
homolog in Archaeoglobus fulgidus. The family is related
to cell division protein FtsA and heat shock protein
DnaK.
Length = 333
Score = 47.4 bits (113), Expect = 7e-06
Identities = 58/248 (23%), Positives = 110/248 (44%), Gaps = 36/248 (14%)
Query: 149 KRTLLHSIITDYALDGK------SGIKSPISMFADK--IGIESHLLTVEKSSMKNLERAI 200
R + +I D+ + K + S S F + I + S + VE+ ++K E A+
Sbjct: 65 IRPMKDGVIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVK--ESAL 122
Query: 201 NRAHLSVERMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIG 260
+ V ++ P A+ + + E GS+V+D+GGGTT++A+ G +V I +G
Sbjct: 123 SAGAREVY-LIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIVVSRSIRVG 181
Query: 261 G--------SHVTNDLARGLSISLDNAERLKVMHPSIIPSLADEHDILSIPTIGNADHND 312
G +++ L I AER+K+ S P L DE + + +
Sbjct: 182 GDEFDEAIINYIRRTY--NLLIGEQTAERIKIEIGSAYP-LNDEPRKMEV-----RGRDL 233
Query: 313 LVQVSRAMI--SRIIQARIEETFELIGERIKKS-------GFSSLASKRIVLTGGASQVI 363
+ + R + S ++ ++E I E +K++ + + + IVLTGG + +
Sbjct: 234 VTGLPRTIEITSVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLR 293
Query: 364 GLQEMLRE 371
L ++L +
Sbjct: 294 NLDKLLSK 301
>gnl|CDD|184401 PRK13927, PRK13927, rod shape-determining protein MreB;
Provisional.
Length = 334
Score = 42.8 bits (102), Expect = 2e-04
Identities = 54/202 (26%), Positives = 83/202 (41%), Gaps = 56/202 (27%)
Query: 230 GSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDLAR------GLSISLDNAERLK 283
GS+V+D+GGGTT++A+ G +VY + +GG + L I AER+K
Sbjct: 149 GSMVVDIGGGTTEVAVISLGGIVYSKSVRVGGDKFDEAIINYVRRNYNLLIGERTAERIK 208
Query: 284 VMHPSIIPSLADEHDILSIPTIGNADHNDLV------------QVSRAM---ISRIIQA- 327
+ I S ++L + G DLV ++ A+ +S I++A
Sbjct: 209 IE----IGSAYPGDEVLEMEVRG----RDLVTGLPKTITISSNEIREALQEPLSAIVEAV 260
Query: 328 RI--EETF-ELIGERIKKSGFSSLASKRIVLTGGASQVIGLQEMLRETICSNVRMGRPIG 384
++ E+T EL + I G IVLTGG + + GL ++L E
Sbjct: 261 KVALEQTPPELAAD-IVDRG--------IVLTGGGALLRGLDKLLSE------------- 298
Query: 385 AVGLPFS-ARSPAFSTVIGLMI 405
GLP A P G
Sbjct: 299 ETGLPVHVAEDPLTCVARGTGK 320
>gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH;
Provisional.
Length = 335
Score = 43.0 bits (101), Expect = 2e-04
Identities = 50/182 (27%), Positives = 83/182 (45%), Gaps = 28/182 (15%)
Query: 210 MVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDLA 269
++ P A+ + + + + +VV+D+GGGTT++AI G +V I IGG + D+
Sbjct: 131 LIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVVSCHSIRIGGDQLDEDIV 190
Query: 270 R------GLSISLDNAERLKVMHPSIIPSLADEHDILSIPTIGNADHNDLVQVSRAMI-- 321
L I AE++K+ I EH+ ++ G DLV I
Sbjct: 191 SFVRKKYNLLIGERTAEQVKME----IGYALIEHEPETMEVRG----RDLVTGLPKTITL 242
Query: 322 -SRIIQARIEETFELIGERIKK---------SGFSSLASKRIVLTGGASQVIGLQEMLRE 371
S+ IQ + E+ I E I+ SG + + ++LTGG + + G++E L E
Sbjct: 243 ESKEIQGAMRESLLHILEAIRATLEDCPPELSG--DIVDRGVILTGGGALLNGIKEWLSE 300
Query: 372 TI 373
I
Sbjct: 301 EI 302
>gnl|CDD|182674 PRK10719, eutA, reactivating factor for ethanolamine ammonia lyase;
Provisional.
Length = 475
Score = 39.5 bits (93), Expect = 0.002
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 14/94 (14%)
Query: 234 IDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDLARGLSISLDNAERLKVMHPSIIPSL 293
ID+GGGT A+FD GK++ + +GG I D+ R+ + P L
Sbjct: 151 IDIGGGTANYALFDAGKVIDTACLNVGGRL----------IETDSQGRVTYISPPGQMIL 200
Query: 294 ADEHDILSIPTIGN-ADHNDLVQVSRAMISRIIQ 326
+ L+I T G L QV+R M +++
Sbjct: 201 DELG--LAI-TDGRSLTGEQLQQVTRRMAELLVE 231
>gnl|CDD|148092 pfam06277, EutA, Ethanolamine utilisation protein EutA. This
family consists of several bacterial EutA ethanolamine
utilisation proteins. The EutA protein is thought to
protect the lyase (EutBC) from inhibition by CNB12.
Length = 473
Score = 39.5 bits (93), Expect = 0.002
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 16/96 (16%)
Query: 234 IDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDLARGLSISLDNAERLKVMHPSIIPSL 293
ID+GGGTT +A+F+ G+ VI + L I +D R+ + P +
Sbjct: 148 IDIGGGTTNLALFENGE-----VIDTACLDIGGRL-----IKIDPTGRITYISPKGRRLI 197
Query: 294 ADE-HDILSIPTIGN-ADHNDLVQVSRAMISRIIQA 327
A+ ++ +G+ A L QV R M + +
Sbjct: 198 AELGLEL----EVGDRATPEQLDQVCREMAQLLEEV 229
>gnl|CDD|162645 TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat
Shock Cognate proteins HscA and HscB act together as
chaperones. HscA resembles DnaK but belongs in a
separate clade. The apparent function is to aid assembly
of iron-sulfur cluster proteins. Homologs from Buchnera
and Wolbachia are clearly in the same clade but are
highly derived and score lower than some examples of
DnaK.
Length = 599
Score = 39.2 bits (92), Expect = 0.002
Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 31/190 (16%)
Query: 203 AHLSVERMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGG- 261
A L+V R++ P A+ +A +D E V D+GGGT ++I K V+ +V+A GG
Sbjct: 155 AGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVF-EVLATGGD 213
Query: 262 -------------------SHVTNDLARG-LSISLDNAERLKVMHPSIIPSLADEHDILS 301
++ DL + L A K +L D +
Sbjct: 214 SALGGDDFDHALAKWILKQLGISADLNPEDQRLLLQAARAAKE-------ALTDAESVEV 266
Query: 302 IPTIGNADHNDLVQVSRAMISRIIQARIEETFELIGERIKKSGFSSLASKRIVLTGGASQ 361
T+ D +++R +IQ +++T + ++ +G S K +VL GG+++
Sbjct: 267 DFTLDGKDF--KGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTR 324
Query: 362 VIGLQEMLRE 371
+ ++ + E
Sbjct: 325 MPLVRRAVAE 334
>gnl|CDD|162237 TIGR01175, pilM, type IV pilus assembly protein PilM. This protein
is required for the assembly of the type IV fimbria in
Pseudomonas aeruginosa responsible for twitching
motility, and for a similar pilus-like structure in
Synechocystis. It is also found in species such as
Deinococcus described as having natural transformation
(for which a type IV pilus-like structure is proposed)
but not fimbria.
Length = 348
Score = 39.4 bits (92), Expect = 0.002
Identities = 35/181 (19%), Positives = 70/181 (38%), Gaps = 33/181 (18%)
Query: 232 VVIDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDLARGLSISLDNAERLKVMHPSIIP 291
++D+G ++ + + G++++ + G +T++L+R ++ + A K
Sbjct: 191 ALVDIGATSSTLNLLHPGRMLFTREVPFGTRQLTSELSRAYGLNPEEAGEAKQQG----- 245
Query: 292 SLADEHDILSIPTIGNADHNDLVQVSRAMISRIIQARIEETFELIGERIKKSGFSSLASK 351
L +D P + +LV I R +Q F SG +SL
Sbjct: 246 GLPLLYD----PEVLRRFKGELVD----EIRRSLQ------FFTAQ-----SGTNSLD-- 284
Query: 352 RIVLTGGASQVIGLQEMLRETICSNVRMGRPIGAVGLPFSARS-------PAFSTVIGLM 404
+VL GG + + GL + + + + P + L + PA T +GL
Sbjct: 285 GLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMALDAKVDAGRLAVDAPALMTALGLA 344
Query: 405 I 405
+
Sbjct: 345 L 345
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 39.0 bits (91), Expect = 0.003
Identities = 48/199 (24%), Positives = 92/199 (46%), Gaps = 38/199 (19%)
Query: 203 AHLSVERMVASPYASGLATLVD-DEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGG 261
A L V R++ P A+ LA +D + E +V D+GGGT ++I G V+ +V A G
Sbjct: 159 AGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVF-EVKATAG 217
Query: 262 S-HVTND---------------LARGLSISLDN---------AERLKVMHPSIIPSLADE 296
+ H+ D G+ +S D AE+ K+ S++ +
Sbjct: 218 NNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTS--- 274
Query: 297 HDILSIPTIGNADHND----LVQVSRAMISRIIQARIEETFELIGERIKKSGFSSLASKR 352
+++P I AD ++++RA + + +E T E + + +K +G R
Sbjct: 275 ---INLPFI-TADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDR 330
Query: 353 IVLTGGASQVIGLQEMLRE 371
++L GG++++ +QE +++
Sbjct: 331 VILVGGSTRIPAVQEAIQK 349
>gnl|CDD|184402 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional.
Length = 336
Score = 38.7 bits (91), Expect = 0.003
Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 36/164 (21%)
Query: 230 GSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDLAR------GLSISLDNAERLK 283
G++V+D+GGGTT IA+ G +V I + G + R L I AE +K
Sbjct: 148 GNMVVDIGGGTTDIAVLSLGGIVTSSSIKVAGDKFDEAIIRYIRKKYKLLIGERTAEEIK 207
Query: 284 VMHPSIIPSLADE------HDILS-IPTIGNADHNDLVQVSRAMISRIIQARIEETFELI 336
+ + P +E D+++ +P + V+ S I+ ++E I
Sbjct: 208 IKIGTAFPGAREEEMEIRGRDLVTGLP--------KTITVT----SEEIREALKEPVSAI 255
Query: 337 GERIKK---------SGFSSLASKRIVLTGGASQVIGLQEMLRE 371
+ +K S + + + I++TGG + + GL ++L E
Sbjct: 256 VQAVKSVLERTPPELS--ADIIDRGIIMTGGGALLHGLDKLLAE 297
>gnl|CDD|167230 PRK01433, hscA, chaperone protein HscA; Provisional.
Length = 595
Score = 36.4 bits (84), Expect = 0.016
Identities = 35/177 (19%), Positives = 85/177 (48%), Gaps = 19/177 (10%)
Query: 203 AHLSVERMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGGS 262
A V R++A P A+ A ++ + +V D+GGGT ++I + + ++ VIA G
Sbjct: 167 AGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIF-QVIATNGD 225
Query: 263 HVTNDLARGLSISLDNAERLKVMHPSIIPSLADEHDILSI-----PTIGNAD--HNDLVQ 315
++ + ++ + + + L + D L + T+ D +ND +
Sbjct: 226 NM---------LGGNDIDVVITQYLCNKFDLPNSIDTLQLAKKAKETLTYKDSFNNDNIS 276
Query: 316 VSRAMISRIIQARIEETFELIGERIKKSGFSSLASKRIVLTGGASQVIGLQEMLRET 372
+++ + ++I +E T + E ++++G ++ ++L GGA+++ +++ L +
Sbjct: 277 INKQTLEQLILPLVERTINIAQECLEQAGNPNI--DGVILVGGATRIPLIKDELYKA 331
>gnl|CDD|149788 pfam08841, DDR, Diol dehydratase reactivase ATPase-like domain.
Diol dehydratase (DDH, EC:4.2.1.28) and its
isofunctional homologue glycerol dehydratase (GDH,
EC.4.2.1.30) are enzymes which catalyse the conversion
of glycerol 1,2-propanediol, and 1,2-ethanediol to
aldehydes. These reactions require coenzyme B12.
Cleavage of the Co-C bond of coenzyme B12 by substrates
or coenzyme analogues results in inactivation during
which coenzyme B12 remains tightly bound to the
apoenzyme. This family comprises of the large subunit of
the diol dehydratase and glycerol dehydratase
reactivating factors whose function is to reactivate the
holoenzyme by exchange of a damaged cofactor for intact
coenzyme.
Length = 332
Score = 35.4 bits (82), Expect = 0.026
Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 4/121 (3%)
Query: 165 KSGIKSPISMFADKIGIESHLLTVEKSSMKNLERAI-NRAHLSVERMVASPYASGLATLV 223
+ G+ SM +GI + ++ + M + + + VE A+ L L
Sbjct: 71 RGGLAGEFSM-EQAVGIAA-MVKADHLQMAIIAAELEEELGVPVEIGGVEAEAAILGALT 128
Query: 224 DDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDLARGLSIS-LDNAERL 282
++D+G G+T +I + V +A G VT + L + AE +
Sbjct: 129 TPGTPKPLAILDLGAGSTDASIINAEGTVTATHLAGAGEMVTMLINSELGLEDRALAEDI 188
Query: 283 K 283
K
Sbjct: 189 K 189
>gnl|CDD|162816 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this
family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
chaperone system. All members of the seed alignment were
taken from completely sequenced bacterial or archaeal
genomes and (except for Mycoplasma sequence) found
clustered with other genes of this systems. This model
excludes DnaK homologs that are not DnaK itself, such as
the heat shock cognate protein HscA (TIGR01991).
However, it is not designed to distinguish among DnaK
paralogs in eukaryotes. Note that a number of dnaK genes
have shadow ORFs in the same reverse (relative to dnaK)
reading frame, a few of which have been assigned
glutamate dehydrogenase activity. The significance of
this observation is unclear; lengths of such shadow ORFs
are highly variable as if the presumptive protein
product is not conserved.
Length = 595
Score = 33.1 bits (76), Expect = 0.13
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 203 AHLSVERMVASPYASGLATLVDDEFELGSV-VIDMGGGTTKIAIFDKGKLVYMDVIAIGG 261
A L V R++ P A+ LA +D + + V D+GGGT ++I + G V+ +V++ G
Sbjct: 156 AGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVF-EVLSTAG 214
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 31.9 bits (73), Expect = 0.36
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 203 AHLSVERMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGG 261
A L VER++ P A+ LA +D +V D+GGGT +++ + G V+ +V A G
Sbjct: 161 AGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVF-EVKATSG 218
>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein;
Provisional.
Length = 657
Score = 31.6 bits (71), Expect = 0.40
Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 23/191 (12%)
Query: 203 AHLSVERMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGG- 261
A L+V R+V P A+ LA +D + V D+GGGT I++ + V+ +V A G
Sbjct: 186 AGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVF-EVKATNGD 244
Query: 262 -------------SHVTNDLARGLSISLDNA----ERLKVMHPSIIPSLADEHDI-LSIP 303
++ + + I L +R++ L+ + +++P
Sbjct: 245 THLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLP 304
Query: 304 TI-GNADHNDLVQ--VSRAMISRIIQARIEETFELIGERIKKSGFSSLASKRIVLTGGAS 360
I NAD +Q +SR+ I Q IE + + +K +G +VL GG +
Sbjct: 305 FITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMT 364
Query: 361 QVIGLQEMLRE 371
++ + E +++
Sbjct: 365 RMPKVVEEVKK 375
>gnl|CDD|128564 smart00268, ACTIN, Actin. ACTIN subfamily of
ACTIN/mreB/sugarkinase/Hsp70 superfamily.
Length = 373
Score = 31.5 bits (72), Expect = 0.50
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 211 VASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDV--IAIGGSHVTNDL 268
V S YASG T +VID G G T + G ++ + I I G +T+ L
Sbjct: 134 VLSLYASGRTT---------GLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDLTDYL 184
Query: 269 ARGLS 273
LS
Sbjct: 185 KELLS 189
>gnl|CDD|162523 TIGR01768, GGGP-family, geranylgeranylglyceryl phosphate synthase
family protein. This model represents a family of
sequences including geranylgeranylglyceryl phosphate
synthase which catalyzes the first committed step in the
synthesis of ether-linked membrane lipids in archaea.
The clade of bacterial sequences may have the same
function or a closely related function. This model
supercedes TIGR00265, which has been retired.
Length = 223
Score = 30.9 bits (70), Expect = 0.64
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 255 DVIAIGGS-HVTNDLARGLSISLDNAERLKVMHPSIIPSLADEHDILSIPTIGNADHNDL 313
D I IGGS VT + L +L ++ PS +++ + D L P++ N+D
Sbjct: 29 DAILIGGSQGVTYEKTDTLIEALRRYGLPIILFPSNPTNVSRDADALFFPSVLNSDDPYW 88
Query: 314 VQVSRAMISRIIQARIE--ETFELIGERIKKSGF 345
II A+IE F+ IGE I G+
Sbjct: 89 ----------IIGAQIEAAPKFKKIGEEIIPEGY 112
>gnl|CDD|129344 TIGR00241, CoA_E_activ, CoA-substrate-specific enzyme activase,
putative. This domain may be involved in generating or
regenerating the active sites of enzymes related to
(R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA
reductase.
Length = 248
Score = 30.9 bits (70), Expect = 0.69
Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 27/166 (16%)
Query: 233 VIDMGGGTTKIAIFDKGKL---VYMDVIAIGGSHVTNDLARGLSISLD--NAERLKVMHP 287
VID+GG +K+ D GK+ D A G AR L +S++ + K
Sbjct: 95 VIDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRLGVSVEELGSLAEKADRK 154
Query: 288 SIIPSLA---DEHDILSIPTIGNADHNDLVQVSRAMISRIIQARIEETFELIGERIKKSG 344
+ I S+ E +++S+ G + L V ++ R+ E++ +R+K
Sbjct: 155 AKISSMCTVFAESELISLLAAGVKKEDILAGVYESIAERV--------AEML-QRLK--- 202
Query: 345 FSSLASKRIVLTGGASQVIGLQEMLRETICSNVRMGRP---IGAVG 387
IV TGG S+ GL + L + + V +GAVG
Sbjct: 203 ----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVG 244
>gnl|CDD|185292 PRK15394, PRK15394,
4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol
deformylase ArnD; Provisional.
Length = 296
Score = 30.3 bits (69), Expect = 0.94
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 36 CMIGKLVPQNTTSLLSGRTHRIEVIG----IGCQQS 67
C + +L+P + +L G+ R + G +GCQQ
Sbjct: 260 CPLSELLPDDLETLPLGKVVRGNIPGREGWLGCQQI 295
>gnl|CDD|162532 TIGR01780, SSADH, succinate-semialdehyde dehydrogenase. SSADH
enzyme belongs to the aldehyde dehydrogenase family
(pfam00171), sharing a common evolutionary origin and
enzymatic mechanism with lactaldehyde dehydrogenase.
Like in lactaldehyde dehydrogenase and succinate
semialdehyde dehydrogenase, the mammalian catalytic
glutamic acid and cysteine residues are conserved in all
the enzymes of this family (PS00687, PS00070).
Length = 448
Score = 30.1 bits (68), Expect = 1.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 54 THRIEVIGIGCQQSHGVKMGTIVDIDAVERVVRQVVDAAERMA 96
++ + +G GV G +++ AVE+V + + DA E+ A
Sbjct: 282 AEAVKKLKVGNGLDEGVTQGPLINEKAVEKVEKHIADAVEKGA 324
>gnl|CDD|178726 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 30.2 bits (68), Expect = 1.2
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 203 AHLSVERMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGGS 262
A L V R++ P A+ LA + + +V D+GGGT +++ + G V+ + G +
Sbjct: 198 AGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDT 257
Query: 263 HVTND 267
H+ D
Sbjct: 258 HLGGD 262
>gnl|CDD|183971 PRK13317, PRK13317, pantothenate kinase; Provisional.
Length = 277
Score = 29.9 bits (68), Expect = 1.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 234 IDMGGGTTKIAIFDKGKL 251
ID GG TKI ++ K
Sbjct: 7 IDAGGTLTKIVYLEEKKQ 24
>gnl|CDD|183673 PRK12676, PRK12676, bifunctional inositol-1
monophosphatase/fructose-1,6-bisphosphatase; Reviewed.
Length = 263
Score = 29.5 bits (67), Expect = 1.6
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 337 GERIKKSGFSSLASKRIVLTGGASQVIGLQEMLRETICSNVRMGRPIGAVGL 388
G+ IK S S L + + G + + VR R +GA+ L
Sbjct: 140 GKPIKVSKTSELNESAVSIYGYRRGKERTVK-----LGRKVRRVRILGAIAL 186
>gnl|CDD|183274 PRK11678, PRK11678, putative chaperone; Provisional.
Length = 450
Score = 28.3 bits (64), Expect = 4.1
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 12/52 (23%)
Query: 196 LERAINRAHLSVERMVA---SPYASGL---ATLVDDEFELGSVVIDMGGGTT 241
LERA RA + V P A+GL ATL +++ L V+D+GGGTT
Sbjct: 176 LERAAKRAGF---KDVEFQFEPVAAGLDFEATLTEEKRVL---VVDIGGGTT 221
>gnl|CDD|163200 TIGR03285, methan_mark_14, putative methanogenesis marker protein
14. Members of this protein family, to date, are found
in a completed prokaryotic genome if and only if the
species is one of the archaeal methanogens. The exact
function is unknown, but likely is linked to
methanogenesis or a process closely connected to it.
Length = 445
Score = 28.2 bits (63), Expect = 4.2
Identities = 20/101 (19%), Positives = 43/101 (42%), Gaps = 34/101 (33%)
Query: 22 YIVSALDIGSTKTVCMIGKLVPQNTTSLLSGRTHRIEVIGIGCQQSHGVKMGTIVDI--- 78
YIV+++++G+T T C++ T+L +G+T+ + V+M V
Sbjct: 2 YIVASVELGNTTTKCIL------TATNLKTGKTYLLNKC---------VRMTRDVRPPRS 46
Query: 79 ----------------DAVERVVRQVVDAAERMAGFTVDNL 103
++V +V+ + + + AG +D+L
Sbjct: 47 GEEVFGKTVWGVELTRESVAELVKDTLKESLKKAGLDIDDL 87
>gnl|CDD|129849 TIGR00766, TIGR00766, ribonuclease, putative. This family shows
similarity to ribonuclease BN.
Length = 263
Score = 27.9 bits (62), Expect = 4.7
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 383 IGAVGLPFSARSP---AFSTVIGLMIY 406
+ + LP RSP AF +V+GLM++
Sbjct: 216 VMTIYLPILLRSPSGAAFGSVLGLMVF 242
>gnl|CDD|183973 PRK13320, PRK13320, pantothenate kinase; Reviewed.
Length = 244
Score = 27.9 bits (63), Expect = 5.0
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 233 VIDMGGGTTKIAIFDKGKLV 252
VID+G TTK+A+F+ +L+
Sbjct: 6 VIDIGNTTTKLAVFEGDELL 25
>gnl|CDD|181101 PRK07742, PRK07742, phosphate butyryltransferase; Validated.
Length = 299
Score = 28.1 bits (63), Expect = 5.2
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 274 ISLDNA-ERLKVMHPSIIPSLADEHDILSIPTI--GNADHNDLVQVSRAMISRII 325
++LDNA ++ H I+ +A + DIL +PTI GN + LV + A + +I
Sbjct: 213 LALDNAVSQIAAEHKGIVSDVAGKADILLVPTIEAGNVLYKSLVYFADAKVGAMI 267
>gnl|CDD|173154 PRK14691, PRK14691, 3-oxoacyl-(acyl carrier protein) synthase II;
Provisional.
Length = 342
Score = 27.8 bits (61), Expect = 5.3
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 93 ERMAGFTVDNLLVNISAGCLKSQQHF 118
+R++ FTV + LVN++AG + + HF
Sbjct: 55 KRLSPFTVPSFLVNLAAGHVSIKHHF 80
>gnl|CDD|183972 PRK13318, PRK13318, pantothenate kinase; Reviewed.
Length = 258
Score = 27.8 bits (63), Expect = 5.5
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 32/106 (30%)
Query: 191 SSMKNLERAINRAHLSVE-RMVASP-YASGLATLVDDEFELGS----------------- 231
S M +LER + + ++E +V P +G+ VD+ E+G+
Sbjct: 68 SVMHSLERMCRK-YFNIEPLVVVGPGVKTGINIKVDNPKEVGADRIVNAVAAYELYGGPL 126
Query: 232 VVIDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDLARGLSISLD 277
+V+D G TT DV++ G ++ +A G++IS D
Sbjct: 127 IVVDFGTATT------------FDVVSAKGEYLGGVIAPGINISAD 160
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like
protein; Provisional.
Length = 438
Score = 27.8 bits (62), Expect = 5.7
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 192 SMKNLERAINRAHLSVERMVASPYASGLATLVD-DEFELGSVVI 234
S+ LE I+ H V V Y + + VD ++ E G V+
Sbjct: 106 SVGTLEEIIDENHAIVSSSVGPEYYVNILSFVDKEQLEPGCSVL 149
>gnl|CDD|185598 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional.
Length = 663
Score = 27.5 bits (61), Expect = 7.5
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 203 AHLSVERMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFD 247
A L V R++ P A+ LA +D V D+GGGT I+I +
Sbjct: 200 AGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILE 244
>gnl|CDD|162399 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase.
This alignment encompasses two equivalog models for the
copper and cadmium-type heavy metal transporting P-type
ATPases (TIGR01511 and TIGR01512) as well as those
species which score ambiguously between both models. For
more comments and references, see the files on TIGR01511
and 01512.
Length = 556
Score = 27.2 bits (61), Expect = 8.1
Identities = 32/152 (21%), Positives = 58/152 (38%), Gaps = 49/152 (32%)
Query: 169 KSPISMFADK-----------IGIESHLLTVEKSSMKNLERAINRAHLSVERMVASPYAS 217
K+PI AD+ I + + ++ + ++ L RA+ +V +VA P A
Sbjct: 159 KAPIQRLADRIASYYVPAVLAIALLTFVVWLALGALGALYRAL-----AV-LVVACPCAL 212
Query: 218 GLAT----------------LVDDEFELGSVVIDMGGGTTKIAIFDK------GKLVYMD 255
GLAT L+ G ++ K +FDK GK +D
Sbjct: 213 GLATPVAILVAIGVAARRGILIK-----GGDALEK-LAKVKTVVFDKTGTLTTGKPTVVD 266
Query: 256 VIAIGGSHVTNDLARGLSISLDNAERLKVMHP 287
V + + ++ + L+ +L+ + HP
Sbjct: 267 VEPLDDASISEEELLALAAALEQSSS----HP 294
>gnl|CDD|178963 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 27.4 bits (62), Expect = 8.3
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 203 AHLSVERMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFD 247
A L V R++ P A+ LA +D + + +V D+GGGT FD
Sbjct: 159 AGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGT-----FD 198
>gnl|CDD|179678 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.
Length = 450
Score = 27.4 bits (62), Expect = 8.6
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 308 ADHNDLVQVSRAMISRIIQARIEET---FELIGERIKKSGFSSL 348
AD D + ++ M+ +++ +E E + R+ K L
Sbjct: 241 ADLEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERL 284
>gnl|CDD|184393 PRK13917, PRK13917, plasmid segregation protein ParM; Provisional.
Length = 344
Score = 27.2 bits (60), Expect = 8.9
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 222 LVDDEFELGSV-VIDMGGGTTKIAIFDKGKLV 252
+ D FE G V VID G GTT + K V
Sbjct: 177 VADKAFEEGKVSVIDFGSGTTDLDTIQNLKRV 208
>gnl|CDD|162813 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
zeta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 27.0 bits (60), Expect = 9.1
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 14/89 (15%)
Query: 30 GSTKTVCMIGKLVPQNTTSLLSGRTHRIEVIGIGCQQSH--------GVKMGTIVDIDAV 81
G+T TV +IG+L+ Q +L G RI G + +K VD + +
Sbjct: 89 GTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELL 148
Query: 82 ERVVRQVV------DAAERMAGFTVDNLL 104
V R + D A+++ VD +L
Sbjct: 149 LNVARTSLRTKLPIDLADQLTEIVVDAVL 177
>gnl|CDD|179527 PRK03011, PRK03011, butyrate kinase; Provisional.
Length = 358
Score = 27.0 bits (61), Expect = 9.6
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 233 VIDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDLARGLSI 274
VI+ G +TKIA+F+ K ++ + + H +L + +I
Sbjct: 6 VINPGSTSTKIAVFEDEKPIFEETL----RHSAEELEKFKTI 43
>gnl|CDD|140227 PTZ00200, PTZ00200, cysteine proteinase; Provisional.
Length = 448
Score = 27.0 bits (60), Expect = 9.8
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 127 EVNDSDIQILLKSSFRRYLRDQKRTLLHSIITDY-ALDGKSGIKSPIS----MFADKIGI 181
V DS I L SSFRR R ++ ++ ++ + A+ G +S + + K +
Sbjct: 22 SVRDSTISTLS-SSFRRISRKKRVIIISFLVFLFLAIGGSIVSYVLVSKSKMVKSFKSDL 80
Query: 182 ESHLLTVEKSSMKNLERA 199
E H+ L+++
Sbjct: 81 EEHI----DKDFPRLDKS 94
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.135 0.383
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,082,222
Number of extensions: 467508
Number of successful extensions: 1137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1117
Number of HSP's successfully gapped: 57
Length of query: 440
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 344
Effective length of database: 3,920,105
Effective search space: 1348516120
Effective search space used: 1348516120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)