HHsearch alignment for GI: 254781178 and conserved domain: pfam06898
>pfam06898 YqfD Putative stage IV sporulation protein YqfD. This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis is known to be essential for efficient sporulation although its exact function is unknown.
Probab=96.93 E-value=0.037 Score=33.67 Aligned_cols=147 Identities=18% Similarity=0.223 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEEEEEEC
Q ss_conf 599999999999------------99988713577999999999999998873156089999997421081254899977
Q gi|254781178|r 30 GLEEMRNFLNFC------------VFLEKVLPSYCGVILAIFFFAIVGIYGASIGGHTRKVIDIVDSFIGFSIEKVRIIG 97 (304)
Q Consensus 30 ~~~~~~~~~~~~------------~~~~~~~p~~~g~~~~~~~~~~~~~~g~~~gg~~~~~~~~~~~~~gF~I~~I~V~G 97 (304)
T Consensus 54 d~~~lr~iarkt~~rv~i~~r~GlpF~~~r~~kR~~~~~G~~~f~~~l~-~lS-----------------~fVW~I~i~G 115 (383)
T pfam06898 54 DYKKLRQLVKKTKCKVKFIERKGLPFLFFRLRKRRGIVLGILLFVILLY-FLS-----------------NFIWSIDIKT 115 (383)
T ss_pred HHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-----------------HEEEEEEEEC
T ss_conf 9899999999819689999504717899998887999999999999999-784-----------------0699999986
Q ss_pred CCCCCHHHHHH---HHCCCCCCCEEEECHHHHHHHHH-CCCCEEEEEEEEECCCEEEEEEEEEE-EEEEEEEC-CEEEEE
Q ss_conf 65489889999---80888898438875999999987-19762279999828981999999303-79999957-927997
Q gi|254781178|r 98 NVETPEADIIH---CLDLNTSTSLIFFDAIKIQKQLL-ALPWIAHAEIRRLYPDTMEIRLTERH-PYAIWQNN-SALYLI 171 (304)
Q Consensus 98 n~~ls~~eIl~---~l~i~~~~sl~~ld~~~i~~~L~-~~pwIk~a~V~r~~P~tL~I~I~Er~-PvA~~~~~-g~~~~I 171 (304)
T Consensus 116 ~~~~t~~~i~~~L~~~gi~~G~~k~~id~~~ie~~l~~~~~~i~Wv~v~i~-Gt~l~v~v~Ek~~p~~~~~~~~p~~iVA 194 (383)
T pfam06898 116 AKNIAEHEIRQQLNEIGVKSGVKKFSLDVYKLERELTDNNNNIMWIGVRVR-GTTLKVKVVEKQEPPEELENGEPRNIVA 194 (383)
T ss_pred CCCCCHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHCCCEEEEEEEEE-EEEEEEEEEECCCCCCCCCCCCCCCEEE
T ss_conf 998998999999998699778072778999999999864898299999998-3699999996578975444589866589
Q ss_pred ECCCC----------CCCCCCCCCCCCCCCCCCC
Q ss_conf 05641----------0321000112454311377
Q gi|254781178|r 172 DNNGY----------VITAFNHVRFAYLPILIGE 195 (304)
Q Consensus 172 d~~G~----------Vi~~~~~~~~~~lPli~G~ 195 (304)
T Consensus 195 ~k~GvI~~i~v~~G~p~Vk~GD~VkkGqiLVsG~ 228 (383)
T pfam06898 195 KKDGIITRMYVTKGTAVVKVGDVVKKGDILVSGQ 228 (383)
T ss_pred CCCCEEEEEEECCCEEEECCCCEECCCCEEEEEE
T ss_conf 9997999999647717765899877898999635