HHsearch alignment for GI: 254781178 and conserved domain: pfam08479
>pfam08479 POTRA_2 POTRA domain, ShlB-type. The POTRA domain (for polypeptide-transport-associated domain) is found towards the N-terminus of ShlB family proteins (pfam03865). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel.
Probab=94.08 E-value=0.18 Score=29.22 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=54.9
Q ss_pred EEEEEEEEECCCCCCHHHHHHHHCCCCCCCEEEECHHHHHHHHH----CCCCEE-EEEEEEE--CCCEEEEEEEE
Q ss_conf 12548999776548988999980888898438875999999987----197622-7999982--89819999993
Q gi|254781178|r 88 FSIEKVRIIGNVETPEADIIHCLDLNTSTSLIFFDAIKIQKQLL----ALPWIA-HAEIRRL--YPDTMEIRLTE 155 (304)
Q Consensus 88 F~I~~I~V~Gn~~ls~~eIl~~l~i~~~~sl~~ld~~~i~~~L~----~~pwIk-~a~V~r~--~P~tL~I~I~E 155 (304)
T Consensus 1 F~v~~i~~~G~~~~~~~~l~~~~~~~~g~~l~~~~L~~~~~~i~~~Y~~~GY~~srv~lP~Q~i~~G~l~i~VvE 75 (76)
T pfam08479 1 FPIKGIELEGNTLLPPADLAALLQPYLGRCLGLADLNQLAKALTNAYIERGYVTSRVYLPPQDLSDGVLRLTVLE 75 (76)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEC
T ss_conf 907899998982579999999878750983699999999999999999889879999817850679889999968