RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781178|ref|YP_003065591.1| cell division protein
[Candidatus Liberibacter asiaticus str. psy62]
         (304 letters)



>gnl|CDD|31777 COG1589, FtsQ, Cell division septal protein [Cell envelope
           biogenesis, outer membrane].
          Length = 269

 Score =  134 bits (339), Expect = 3e-32
 Identities = 75/250 (30%), Positives = 125/250 (50%), Gaps = 6/250 (2%)

Query: 45  EKVLPSYCGVILAIFFFAIVGIYGASIGGH-TRKVIDIVDSFIGFSIEKVRIIGNVETPE 103
           E  +P+            ++G+Y   +        + I+ S   F I KV + GN +  E
Sbjct: 16  EAKIPTLNKTRKRGVIRLLIGLYLVLLLLVLVVLWVLILLSLPYFPIRKVSVSGNNQVSE 75

Query: 104 ADIIHCLDLNTSTSLIFFDAIKIQKQLLALPWIAHAEIRRLYPDTMEIRLTERHPYAIWQ 163
            DI+  L L+  TS +  D   I++ +  LPW+  AE+RR +P+T+EI + ER P A WQ
Sbjct: 76  EDILKALGLDGGTSFLTLDLNAIRENIEKLPWVKSAEVRRQFPNTLEIEVVEREPIAYWQ 135

Query: 164 NNSALYLIDNNG-YVITAFNHVRFAYLPILIG-ENIYKAVRSF--EVLSNIAGITKFVKA 219
            N   +LID NG   I   +  +   LP+L+G E     V++   ++ + +A + + +KA
Sbjct: 136 RNDDYHLIDENGNLFIVPSDRPKLPVLPLLVGPEGADPKVKALLEQLSALLALLGEVIKA 195

Query: 220 YNWIAERRWDLHLHNGIIIKLPEEKFDVAIAKILELQNKYQILDRDISVIDMRLPDRLSV 279
                 R WDL L++G+++KL        +A+ ++L  +     R IS ID+R PD  +V
Sbjct: 196 IRKTDRRSWDLTLNDGLVVKLGRSDLAKRLARFVKLYKQLSQPSR-ISYIDLRYPDGFTV 254

Query: 280 RLTTGSFIDR 289
           RL      ++
Sbjct: 255 RLAPEPEEEK 264


>gnl|CDD|146439 pfam03799, FtsQ, Cell division protein FtsQ.  FtsQ is one of
           several cell division proteins. FtsQ interacts with
           other Fts proteins, reviewed in. The precise function of
           FtsQ is unknown.
          Length = 115

 Score = 76.6 bits (189), Expect = 8e-15
 Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 5/116 (4%)

Query: 160 AIWQNNSALYLIDNNGYVITAFNHVRFAYLPILIG--ENIYKAVRSFEVLSNIAGITKF- 216
           A WQ+    YLID  G V  A +  R   LP+L+G   +    +   + L+ +       
Sbjct: 2   AYWQDGGGYYLIDEEGEVFEA-SVARPDDLPLLVGPGASEKAVLALLKELNALLPPLGLR 60

Query: 217 VKAYNWIAERRWDLHLHNGIIIKLPEEKFDVAIAKILELQNKYQILDRDISVIDMR 272
           V        RRWDL L +GI ++L  E     +A+   L    ++L RDI+ ID+R
Sbjct: 61  VSELVLTPRRRWDLVLDDGIEVRLGREDLAKRLARFPAL-YPQKLLGRDIAYIDLR 115


>gnl|CDD|33339 COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate
           transport and metabolism].
          Length = 768

 Score = 31.5 bits (71), Expect = 0.28
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 113 NTSTSLIFFDAIKIQKQLLALPWIAHAEIRR 143
           +TS S ++ D +    + L   +I+H+E+ R
Sbjct: 701 STSNSNVYIDGLTFNGKPLNRTFISHSELLR 731


>gnl|CDD|35263 KOG0040, KOG0040, KOG0040, Ca2+-binding actin-bundling protein
            (spectrin), alpha chain (EF-Hand protein superfamily)
            [Cytoskeleton].
          Length = 2399

 Score = 29.6 bits (66), Expect = 0.96
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 8/72 (11%)

Query: 240  LPEEKFDVAIAKILELQNKYQILDRDISVIDMRLPDRLSVR---LTTGSF-----IDRRD 291
            L  E +   +A +  L  K+Q+L+ DI   + RL D  +     L +G F     +++RD
Sbjct: 1613 LASEDYGKDLASVGNLLKKHQLLEADIVAHEDRLKDLNTQADSLLESGQFDTDQIVEKRD 1672

Query: 292  IVDKRDQELKRM 303
             ++KR   +K +
Sbjct: 1673 NINKRFLNVKEL 1684


>gnl|CDD|36520 KOG1306, KOG1306, KOG1306, Ca2+/Na+ exchanger NCX1 and related
           proteins [Inorganic ion transport and metabolism, Signal
           transduction mechanisms].
          Length = 596

 Score = 26.8 bits (59), Expect = 7.8
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 1/69 (1%)

Query: 222 WIAERRWDLHLHNGIIIKLPEEKFDVAIAKILELQNKYQILDRDISVIDMRLPDRLSVRL 281
           + A++R   +         PE++ D A   +LE Q K +   R I    +      +VR 
Sbjct: 200 YAADKRALFYSSVQKPGDHPEDEVDEAEYHVLESQRKSRAFYR-IQATRLMQGSGNAVRT 258

Query: 282 TTGSFIDRR 290
                 D +
Sbjct: 259 DERDGGDYK 267


>gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
           system, ATPase component [Amino acid transport and
           metabolism / Inorganic ion transport and metabolism].
          Length = 252

 Score = 26.3 bits (58), Expect = 9.6
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 205 EVLSNIAGITKFVKAYNWIAERRWDLHLHNGIIIKLPEE-----KFDVAIAKILELQNKY 259
            +LS         K+   IAE    + L    + + P E     +  +AIA+ L  + K 
Sbjct: 103 RILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKL 162

Query: 260 QILDRDISVIDMRL 273
            ILD   S +D+ +
Sbjct: 163 LILDEPTSALDVSV 176


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.329    0.145    0.437 

Gapped
Lambda     K      H
   0.267   0.0724    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,936,306
Number of extensions: 223390
Number of successful extensions: 759
Number of sequences better than 10.0: 1
Number of HSP's gapped: 754
Number of HSP's successfully gapped: 23
Length of query: 304
Length of database: 6,263,737
Length adjustment: 93
Effective length of query: 211
Effective length of database: 4,254,100
Effective search space: 897615100
Effective search space used: 897615100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (25.7 bits)