RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781178|ref|YP_003065591.1| cell division protein
[Candidatus Liberibacter asiaticus str. psy62]
(304 letters)
>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A
{Yersinia enterocolitica} (A:98-255)
Length = 158
Score = 112 bits (281), Expect = 7e-26
Identities = 26/149 (17%), Positives = 56/149 (37%), Gaps = 8/149 (5%)
Query: 158 PYAIWQNNSALYLIDNNGYVITA-FNHVRFAYLPILIGE--NIYKAVRSFEVLSNIAGIT 214
P+A W + +++D G + V LP+L G + + + ++ +
Sbjct: 1 PFARWNDL---HMVDEQGRSFSVPSERVGKQKLPLLYGPEGSEQDVLEGYRAINKVLAAN 57
Query: 215 KF-VKAYNWIAERRWDLHLHNGIIIKLPEEKFDVAIAKILELQNKYQ-ILDRDISVIDMR 272
K+ +K A W L L N + ++L + + + +EL Q D+ +S +D+R
Sbjct: 58 KYQLKMVAMSARHSWQLALDNDVRLELGRDDRMGRLQRFIELYPMLQQQPDKRVSYVDLR 117
Query: 273 LPDRLSVRLTTGSFIDRRDIVDKRDQELK 301
++ + Q+
Sbjct: 118 YETGAAIGWAPVFIGSQGGEPPVNGQQNS 146
>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane,
septation, cell cycle, transmembrane, inner membrane;
2.7A {Escherichia coli} (A:72-220)
Length = 149
Score = 105 bits (264), Expect = 7e-24
Identities = 29/150 (19%), Positives = 57/150 (38%), Gaps = 11/150 (7%)
Query: 158 PYAIWQNNSALYLIDNNGYVITA-FNHVRFAYLPILIGE--NIYKAVRSFEVLSNIAGIT 214
P A W + +++D G + LP+L G + + ++ + + +
Sbjct: 1 PIARWNDQ---HMVDAEGNTFSVPPERTSKQVLPMLYGPEGSANEVLQGYREMGQMLAKD 57
Query: 215 KF-VKAYNWIAERRWDLHLHNGIIIKLPEEKFDVAIAKIL----ELQNKYQILDRDISVI 269
+F +K A R W L L+N I + L +A+ + LQ + Q + IS +
Sbjct: 58 RFTLKEAAMTARRSWQLTLNNDIKLNLGRGDTMKRLARFVELYPVLQQQAQTDGKRISYV 117
Query: 270 DMRLPDRLSVRLTTGSFIDRRDIVDKRDQE 299
D+R +V + ++ E
Sbjct: 118 DLRYDSGAAVGWAPLPPEESTQQQNQAQAE 147
>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A
{Yersinia enterocolitica} (A:1-97)
Length = 97
Score = 62.1 bits (151), Expect = 1e-10
Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 11/103 (10%)
Query: 56 LAIFFFAIVGIYGASIGGHTRKVIDIVDSFIGFSIEKVRIIGNVETPEADII--HCLDLN 113
+ + + K+ + G D I L L
Sbjct: 3 SSHHHHHHSSGLV---------PRGSHMASSRLPLSKLVVTGERHYTTNDDIRQAILSLG 53
Query: 114 TSTSLIFFDAIKIQKQLLALPWIAHAEIRRLYPDTMEIRLTER 156
+ + D IQ+Q+ LPWI A +R+ +PD ++I L E
Sbjct: 54 APGTFMTQDVNIIQQQIERLPWIQQASVRKQWPDELKIHLVEY 96
>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane,
septation, cell cycle, transmembrane, inner membrane;
2.7A {Escherichia coli} (A:1-71)
Length = 71
Score = 60.5 bits (147), Expect = 2e-10
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 90 IEKVRIIGNVE-TPEADIIHCL-DLNTSTSLIFFDAIKIQKQLLA-LPWIAHAEIRRLYP 146
+ K+ + G T DI + L + + D IQ Q+ LPWI +R+ +P
Sbjct: 1 MSKLVLTGERHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQRLPWIKQVSVRKQWP 60
Query: 147 DTMEIRLTER 156
D ++I L E
Sbjct: 61 DELKIHLVEY 70
>1b25_A Protein (formaldehyde ferredoxin oxidoreductase); MOCO,
tungstoenzyme, tungsten containing protein,
hyperthermophIle; HET: PTT; 1.85A {Pyrococcus furiosus}
(A:208-229,A:418-619)
Length = 224
Score = 29.5 bits (66), Expect = 0.59
Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 191 ILIGENIYKAVRSFEVLSNIAGITKFVKAYNWIAERRWD--LHLHNGIIIKLPEEKFDVA 248
+ +Y +R++ V + ++ +R + L L E+K+D
Sbjct: 128 YKAADRVYSLIRAYWVREFNGKWD---RKMDYPPKRWFTEGLKSGPHKGEHLDEKKYDEL 184
Query: 249 IAK 251
+++
Sbjct: 185 LSE 187
>1yr1_A Divib, FTSQ, cell-division initiation protein; divisome,
cell cycle; NMR {Geobacillus stearothermophilus} PDB:
2alj_A (A:)
Length = 119
Score = 28.9 bits (65), Expect = 0.89
Identities = 15/103 (14%), Positives = 34/103 (33%), Gaps = 13/103 (12%)
Query: 154 TERHPYAIWQNNSALYLIDNNGYVITAF-NHVRFAYLPILIGENIYKAVRSF-------- 204
+E A + + + NG ++ + P+L+G A+
Sbjct: 2 SEWRRIAYVYDRQTFFPLLENGRLLKQEGTKTAPSDAPVLVGWKDGDAIAEMTGQLAELP 61
Query: 205 -EVLSNIAGITKFVKAYNWIAERRWDLHLHNGIIIKLPEEKFD 246
VL ++ I E R +++++G + +F
Sbjct: 62 AAVLGAMSEIHYKPTREY---EDRVIVYMNDGYEVSATIRQFA 101
>2b9s_A Topoisomerase I-like protein; vanadate complex,
isomerase/DNA complex; HET: DNA; 2.27A {Leishmania
donovani} (A:1-34,A:105-155)
Length = 85
Score = 27.1 bits (60), Expect = 3.3
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 225 ERRWDLHLHNGIIIKLPEEKFD 246
ERRW+ HNG++ PE +
Sbjct: 19 ERRWETLAHNGVLFP-PEPIYQ 39
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra
domain, protein transport; 2.20A {Escherichia coli K12}
PDB: 2qcz_A 2v9h_A (A:1-75)
Length = 75
Score = 25.8 bits (57), Expect = 6.5
Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 88 FSIEKVRIIGNVETPEADIIHCLDLNTSTSLIFFDAIKIQKQLLALPWIAHAEIRRLYPD 147
F ++ + G + + + T ++ D + L A + R D
Sbjct: 8 FVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRD-GD 66
Query: 148 TMEIRLTER 156
T+ +++ ER
Sbjct: 67 TLLVQVKER 75
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase;
glutaminase domain, trypsanosoma brucei, ligase,
acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
(A:130-222)
Length = 93
Score = 25.9 bits (57), Expect = 6.8
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 141 IRRLYPDTMEIRLTERHPYAIWQNNSALYLIDNNGYVITAFN 182
+ ++Y + + RH Y + N + + G I+A
Sbjct: 38 MAKIYSKSNIVVERHRHRYEV--NTAYFEDLRKAGLCISAVT 77
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
Length = 120
Score = 25.9 bits (57), Expect = 7.4
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 6/31 (19%)
Query: 104 ADIIHCLDLNTSTSLIFFDAIKIQKQLLALP 134
AD++ L ++F+ + +Q A+P
Sbjct: 3 ADVMSIESL---VEVVFYRGMTMQV---AVP 27
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.329 0.145 0.437
Gapped
Lambda K H
0.267 0.0615 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,467,438
Number of extensions: 116193
Number of successful extensions: 324
Number of sequences better than 10.0: 1
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 23
Length of query: 304
Length of database: 4,956,049
Length adjustment: 88
Effective length of query: 216
Effective length of database: 1,981,209
Effective search space: 427941144
Effective search space used: 427941144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (24.8 bits)