RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781178|ref|YP_003065591.1| cell division protein
[Candidatus Liberibacter asiaticus str. psy62]
         (304 letters)



>d1b25a1 a.110.1.1 (A:211-619) Formaldehyde ferredoxin
           oxidoreductase {Archaeon Pyrococcus furiosus [TaxId:
           2261]}
          Length = 409

 Score = 27.2 bits (60), Expect = 1.8
 Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 191 ILIGENIYKAVRSFEVLSNIAGITKFVKAYNWIAERRWDLHLHNGI--IIKLPEEKFDVA 248
               + +Y  +R++ V        K+ +  ++  +R +   L +G      L E+K+D  
Sbjct: 313 YKAADRVYSLIRAYWVR---EFNGKWDRKMDYPPKRWFTEGLKSGPHKGEHLDEKKYDEL 369

Query: 249 IAKILEL 255
           +++   +
Sbjct: 370 LSEYYRI 376


>d1ug6a_ c.1.8.4 (A:) Beta-glucosidase A {Thermus thermophilus
           [TaxId: 274]}
          Length = 426

 Score = 25.9 bits (56), Expect = 3.8
 Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 2/78 (2%)

Query: 119 IFFDAIKIQKQLLALPWIAHAEIRRLYPDTMEIRLTERHPYAIWQNNSALYLIDNNGYVI 178
           I    +++  + L    + +    R+ P T    L  R+        +  + +   G   
Sbjct: 261 ILSRDLELVARPLDFLGVNYYAPVRVAPGTGT--LPVRYLPPEGPATAMGWEVYPEGLYH 318

Query: 179 TAFNHVRFAYLPILIGEN 196
                 R    P+ + EN
Sbjct: 319 LLKRLGREVPWPLYVTEN 336


>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli
           [TaxId: 562]}
          Length = 180

 Score = 25.9 bits (56), Expect = 4.4
 Identities = 5/21 (23%), Positives = 13/21 (61%)

Query: 251 KILELQNKYQILDRDISVIDM 271
           K+ E+Q   ++    ++V+D+
Sbjct: 9   KLDEIQQSDKLFKPGMTVVDL 29


>d1qtma2 e.8.1.1 (A:423-831) DNA polymerase I (Klenow fragment)
           {Thermus aquaticus [TaxId: 271]}
          Length = 409

 Score = 25.4 bits (54), Expect = 6.0
 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 8/108 (7%)

Query: 156 RHPYAIWQNNSALYLIDNNGYVITAFNHVRFAYLPILIGENIYKAVRSFEVLSNIAG--- 212
             P         L      GYV T F   R+        +++ +A         + G   
Sbjct: 277 SFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAA 336

Query: 213 -ITK--FVKAYNWIAERRWD--LHLHNGIIIKLPEEKFDVAIAKILEL 255
            + K   VK +  + E      L +H+ ++++ P+E+ +       E+
Sbjct: 337 DLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEV 384


>d2p02a1 d.130.1.1 (A:38-147) S-adenosylmethionine synthetase {Human
           (Homo sapiens), isoform type-2 [TaxId: 9606]}
          Length = 110

 Score = 24.9 bits (54), Expect = 9.2
 Identities = 12/60 (20%), Positives = 23/60 (38%)

Query: 54  VILAIFFFAIVGIYGASIGGHTRKVIDIVDSFIGFSIEKVRIIGNVETPEADIIHCLDLN 113
           ++LA    +   +    +     K I   DS  GF  +   ++  +E    DI   + L+
Sbjct: 50  ILLAGEITSRAAVDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGVHLD 109


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.145    0.437 

Gapped
Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,228,823
Number of extensions: 61551
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 12
Length of query: 304
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,240,546
Effective search space: 271679574
Effective search space used: 271679574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.9 bits)