HHsearch alignment for GI: 254781179 and conserved domain: COG0458
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism].
Probab=100.00 E-value=8.2e-32 Score=224.06 Aligned_cols=272 Identities=21% Similarity=0.287 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCC---------------------CHHHHHHHCCCCEEEECCCCCCCCCCHH----HHH
Q ss_conf 999999999998798899961586---------------------5688887539989999254884343102----356
Q gi|254781179|r 17 SSGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNVLHGNFGEDGLV----QAI 71 (300)
Q Consensus 17 ~S~~~i~~aL~~~g~~v~~id~~~---------------------~~~~~l~~~~~D~vf~~lhG~~gEdg~i----q~~ 71 (300)
T Consensus 16 ysG~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP~~~E~v~~Ii~~E~~Dailp~~ggqt~Ln~~~~l~e~g~ 95 (400)
T COG0458 16 YSGTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIEPITKEPVEKIIEKERPDAILPTLGGQTALNAALELKEKGV 95 (400)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 36789999998669759997288721247800053026624737889999975376626324687413468899877264
Q ss_pred HHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCC--CHHHHHCCCCEEEEECCCCCCCCEEEECCHHH
Q ss_conf 6643210023100233203650010000212100001213202220--00122105862564324776421143259899
Q gi|254781179|r 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 (300)
Q Consensus 72 le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~--~~~~~~~~~P~ivKP~~ggsS~Gv~~v~~~~e 149 (300)
T Consensus 96 l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~~~e~~~~~~~ig~PvIVrP~~~lGG~G~~i~~n~ee 174 (400)
T COG0458 96 LEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHSVEEADEIADEIGYPVIVKPSFGLGGSGGGIAYNEEE 174 (400)
T ss_pred HHHCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECHHH
T ss_conf 5644977994587895564209999999998399988-412356777765576369977980685788875168718999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCC-CEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHH
Q ss_conf 9998863003668854223335788-45788731444420022025543333110000112222458652-116665544
Q gi|254781179|r 150 IPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227 (300)
Q Consensus 150 l~~~~~~~~~~~~~~~vlVEefI~G-~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~-l~~~~~~~i 227 (300)
T Consensus 175 l~~~~~~~l~~s~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc~men-~-d-p~gvhtgdsi~vapaqtl~d~eyq~~ 251 (400)
T COG0458 175 LEEIIEEGLRASPVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVCNMEN-L-D-PMGVHTGDSITVAPAQTLTDKEYQML 251 (400)
T ss_pred HHHHHHHCCCCCCCCCCEEEEEECCCEEEEEEEEEECCCCEEEEEECCC-C-C-CCCCCCCCEEEECCCCCCCCHHHHHH
T ss_conf 9999873224476420012442168569999999837998799986786-5-6-56644432365214556543788998
Q ss_pred HHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCH-----HHHHHH--HHH--HCCCCHHHHHHHH
Q ss_conf 4444457753487645799999976898399997472658882-----238999--999--8399989999999
Q gi|254781179|r 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-----VSIFPE--MAA--YAGYSFRELLLWM 292 (300)
Q Consensus 228 ~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~-----~s~~p~--~~~--~~G~s~~~li~~i 292 (300)
T Consensus 252 r~~~~~iir~igi~G~~niQ~av~~~~~~~~viEvNpRvSrssaLaskAtgypia~vaakla~g~~l~Ei~n~i 325 (400)
T COG0458 252 RDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPRVSRSSALASKATGYPIAKVAAKLAVGYTLDEIRNDI 325 (400)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCHHHCCCC
T ss_conf 88777788874114787314898699855999995687676403155446876999999750356706544766