>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase; InterPro: IPR004549 This family represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase (6.4.1.2 from EC) is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase (6.3.4.14 from EC), and two subunits of carboxyl transferase in a 2:2 complex. In the first step of long-chain fatty acid synthesis, biotin carboxylase catalyses the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coA. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase). In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.; GO: 0016874 ligase activity.

Probab=99.97 E-value=5.8e-31 Score=218.60 Aligned_cols=266 Identities=21% Similarity=0.315 Sum_probs=199.0 Q ss_pred HHHHHHHHHHCCCEEEEEC--CCCCHHHHH-HHCCC----------CEEE------------ECCCCCCC---CCCHHHH Q ss_conf 9999999998798899961--586568888-75399----------8999------------92548843---4310235 Q gi|254781179|r 19 GKACASALEDAGFKVSQID--VDRSVGLVL-AHLKP----------DLAF------------NVLHGNFG---EDGLVQA 70 (300) Q Consensus 19 ~~~i~~aL~~~g~~v~~id--~~~~~~~~l-~~~~~----------D~vf------------~~lhG~~g---Edg~iq~ 70 (300) T Consensus 14 A~RIiRAC~ElGi~TVAVyS~aD~dalHV~LADEavCIGea~S~kSYL~IpnI~aAA~~tG~~AiHPGYGFLSENA~FAe 93 (451) T TIGR00514 14 ALRIIRACKELGIATVAVYSTADRDALHVLLADEAVCIGEAPSAKSYLNIPNIIAAAEITGADAIHPGYGFLSENADFAE 93 (451) T ss_pred HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHH T ss_conf 88999988864986398600441332343430253006862211244115889998877488076288773443124788 Q ss_pred HHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEE---EECCCC--CHHHHHCCCCEEEEECCCCCCCCEEEEC Q ss_conf 66643210023100233203650010000212100001213---202220--0012210586256432477642114325 Q gi|254781179|r 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIK 145 (300) Q Consensus 71 ~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~---~~~~~~--~~~~~~~~~P~ivKP~~ggsS~Gv~~v~ 145 (300) T Consensus 94 ~c~~~g~~FIGP~pe~Ir~MGDK~~A~~~mKkaGVP~VPGS~GP~~~~~~e~~~~A~~IGyPv~IKA~AGGGGRGmR~vR 173 (451) T TIGR00514 94 ICEDHGITFIGPSPEAIRLMGDKVTAKETMKKAGVPVVPGSDGPLVEDEEEAVRIAKEIGYPVIIKATAGGGGRGMRVVR 173 (451) T ss_pred HHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEC T ss_conf 98738826667871201126886899999974887662388886310278899999747896899962589972258862 Q ss_pred CHHHHHHHHHHHCC----CCCCCCCCCCCCCC-CCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-C Q ss_conf 98999998863003----66885422333578-845788731444420022025543333110000112222458652-1 Q gi|254781179|r 146 KDQSIPLDLLQSSS----WNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219 (300) Q Consensus 146 ~~~el~~~~~~~~~----~~~~~~vlVEefI~-G~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~-l 219 (300) T Consensus 174 ~~~El~~~~~~a~~EA~AAF~N~~VYiEKfienPRH~E~QVLAD~~GN~vyLgERDCSi---QRR--~QKllEEaPsP~L 248 (451) T TIGR00514 174 EEDELVKLIKAARAEAAAAFNNDGVYIEKFIENPRHVEIQVLADKYGNVVYLGERDCSI---QRR--NQKLLEEAPSPAL 248 (451) T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEECCCCCCH---HCC--CCCEEEECCCCCC T ss_conf 86899999999999997402879627863336994079998751788878971214620---004--6544654688877 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCE-EEEEEECCCCCC-CH-HHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 1666554444444577534876457999999768983-999974726588-82-23899999983999899999999975 Q gi|254781179|r 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK-VFWLEINVQPGM-TP-VSIFPEMAAYAGYSFRELLLWMVEDA 296 (300) Q Consensus 220 ~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~-~~~lEvN~~PGl-t~-~s~~p~~~~~~G~s~~~li~~ii~~A 296 (300) T Consensus 249 t~ElR~~~G~~Av~aA~~iGY~GaGTvEFLld~-~~~rFYFmEMNTRIQVEHPVTEmv------tGv---DL~keQirvA 318 (451) T TIGR00514 249 TSELREKMGDAAVKAAKSIGYTGAGTVEFLLDK-NGQRFYFMEMNTRIQVEHPVTEMV------TGV---DLIKEQIRVA 318 (451) T ss_pred CHHHHHHHHHHHHHHHHHCCCEECCEEEEEEEC-CCCEEEEEEECCEEEEEECCEEEE------ECH---HHHHHHHHHH T ss_conf 889999998999999986498003516888625-887357765176021110320146------002---5788899873 Q ss_pred HCC Q ss_conf 117 Q gi|254781179|r 297 SCL 299 (300) Q Consensus 297 ~~~ 299 (300) T Consensus 319 ~G~ 321 (451) T TIGR00514 319 AGE 321 (451) T ss_pred CCC T ss_conf 789

HHsearch alignment for GI: 254781179 and conserved domain: TIGR00514