HHsearch alignment for GI: 254781179 and conserved domain: TIGR01016
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit; InterPro: IPR005809 There are four different enzymes that share a similar catalytic mechanism which involves the phosphorylation by ATP (or GTP) of a specific histidine residue in the active site. These enzymes are: ATP citrate-lyase (4.1.3.8 from EC) , the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues, catalyzes the formation of acetyl-CoA and oxaloacetate from citrate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. ATP-citrate lyase is a tetramer of identical subunits; Succinyl-CoA ligase (GDP-forming) (6.2.1.4 from EC) is a mitochondrial enzyme that catalyzes the substrate level phosphorylation step of the tricarboxylic acid cycle: the formation of succinyl-CoA from succinate with a concomitant hydrolysis of GTP to GDP and phosphate. This enzyme is a dimer composed of an alpha and a beta subunits; Succinyl-CoA ligase (ADP-forming) (6.2.1.5 from EC) is a bacterial enzyme that during aerobic metabolism functions in the citric acid cycle, coupling the hydrolysis of succinyl-CoA to the synthesis of ATP. It can also function in the other direction for anabolic purposes. This enzyme is a tetramer composed of two alpha and two beta subunits; and Malate-CoA ligase (6.2.1.9 from EC) (malyl-CoA synthetase) , is a bacterial enzyme that forms malyl-CoA from malate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. Malate-CoA ligase is composed of two different subunits. This entry corresponds to a conserved region located in the first half of ATP citrate lyase and in the beta subunits of succinyl-CoA ligases and malate-CoA ligase. ; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=98.91 E-value=1.7e-08 Score=74.51 Aligned_cols=189 Identities=16% Similarity=0.211 Sum_probs=123.4
Q ss_pred CCHHCCCCCCCCEEECCCEEEECCCCCHH--HHHCC-CCEEEEE-CC-CCCCC--CEEEECCHHHHHHHHHHHCCC----
Q ss_conf 50010000212100001213202220001--22105-8625643-24-77642--114325989999988630036----
Q gi|254781179|r 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLIS-PPYVIKP-LK-GGSSL--GIIVIKKDQSIPLDLLQSSSW---- 160 (300)
Q Consensus 92 dK~~~k~~l~~~gIptp~~~~~~~~~~~~--~~~~~-~P~ivKP-~~-ggsS~--Gv~~v~~~~el~~~~~~~~~~---- 160 (300)
T Consensus 4 HEYqAK~if~~YGiPvp~g~v~~s~~e~~~~~~~~g~~~~VvKaQVhaGGRGKAGGv~~a~s~ee~~~~a~~llg~~l~t 83 (389)
T TIGR01016 4 HEYQAKEIFAKYGIPVPEGEVATSVEEVEEIAEELGEGKVVVKAQVHAGGRGKAGGVKVAKSKEEALKAAEKLLGKELKT 83 (389)
T ss_pred CHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHCCEEEE
T ss_conf 43558999984789678860041678999999970799789998773267112157689708799999999870891578
Q ss_pred -------CCCCCCCCCCCCC-CCEEEEEECCCCC--CCE----------------------EEE-CCCCCCCCCCCCCCC
Q ss_conf -------6885422333578-8457887314444--200----------------------220-255433331100001
Q gi|254781179|r 161 -------NHGDQLLIEQYVD-GIELTCGVMGDAS--LDV----------------------TEI-AVPKSDFYSYELKYS 207 (300)
Q Consensus 161 -------~~~~~vlVEefI~-G~E~~v~Vl~~~~--~~~----------------------~ei-~~~~~~~~dy~~Ky~ 207 (300)
T Consensus 84 ~Qt~~~g~~VnkiliE~~~~I~kEyY~s~v~DR~~~~pv~maS~eGGvdIEEvA~~~Pe~I~k~~idp~~~~~pYq~R~~ 163 (389)
T TIGR01016 84 FQTDPLGQPVNKILIEEKIDIDKEYYLSIVIDRSAKKPVIMASTEGGVDIEEVAEKSPEKIIKVAIDPLTGLLPYQAREL 163 (389)
T ss_pred EECCCCCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHCCCCCEEEEEECCCCCCCCHHHHHH
T ss_conf 64078886344787326774120014779998047871799706778417899521957168887177777787899999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE---EEECCCCEEEEEEECC---------CCCC------C
Q ss_conf 12222458652116665544444445775348764579999---9976898399997472---------6588------8
Q gi|254781179|r 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF---LFDPLSRKVFWLEINV---------QPGM------T 269 (300)
Q Consensus 208 ~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf---~~d~~~g~~~~lEvN~---------~PGl------t 269 (300)
T Consensus 164 a~~------~~l~~~~~~~~~~i~~~Ly~~F~e~Da~L~EINPLViT-~~G~L~alDAKl~~DDnALFRH~~l~~~~D~~ 236 (389)
T TIGR01016 164 AKK------LGLEGELIKQVASIIKKLYQIFLEKDASLVEINPLVIT-KDGNLVALDAKLTIDDNALFRHPDLEEMEDYT 236 (389)
T ss_pred HHH------CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEC-CCCCEEEEEEECCCCCCHHCCCCCHHHHCCCC
T ss_conf 997------08970577889999999999887537102545263687-89888998332244655100671168763888
Q ss_pred HHHHHHHHHHHCCCCHHH
Q ss_conf 223899999983999899
Q gi|254781179|r 270 PVSIFPEMAAYAGYSFRE 287 (300)
Q Consensus 270 ~~s~~p~~~~~~G~s~~~ 287 (300)
T Consensus 237 ~~~~~e~~A~~~gL~Yv~ 254 (389)
T TIGR01016 237 QEDQLEVEAKQLGLNYVK 254 (389)
T ss_pred CCCHHHHHHHHHCCCEEE
T ss_conf 777337999861883688