HHsearch alignment for GI: 254781179 and conserved domain: TIGR01016

>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit; InterPro: IPR005809 There are four different enzymes that share a similar catalytic mechanism which involves the phosphorylation by ATP (or GTP) of a specific histidine residue in the active site. These enzymes are: ATP citrate-lyase (4.1.3.8 from EC) , the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues, catalyzes the formation of acetyl-CoA and oxaloacetate from citrate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. ATP-citrate lyase is a tetramer of identical subunits; Succinyl-CoA ligase (GDP-forming) (6.2.1.4 from EC) is a mitochondrial enzyme that catalyzes the substrate level phosphorylation step of the tricarboxylic acid cycle: the formation of succinyl-CoA from succinate with a concomitant hydrolysis of GTP to GDP and phosphate. This enzyme is a dimer composed of an alpha and a beta subunits; Succinyl-CoA ligase (ADP-forming) (6.2.1.5 from EC) is a bacterial enzyme that during aerobic metabolism functions in the citric acid cycle, coupling the hydrolysis of succinyl-CoA to the synthesis of ATP. It can also function in the other direction for anabolic purposes. This enzyme is a tetramer composed of two alpha and two beta subunits; and Malate-CoA ligase (6.2.1.9 from EC) (malyl-CoA synthetase) , is a bacterial enzyme that forms malyl-CoA from malate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. Malate-CoA ligase is composed of two different subunits. This entry corresponds to a conserved region located in the first half of ATP citrate lyase and in the beta subunits of succinyl-CoA ligases and malate-CoA ligase. ; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=98.91  E-value=1.7e-08  Score=74.51  Aligned_cols=189  Identities=16%  Similarity=0.211  Sum_probs=123.4

Q ss_pred             CCHHCCCCCCCCEEECCCEEEECCCCCHH--HHHCC-CCEEEEE-CC-CCCCC--CEEEECCHHHHHHHHHHHCCC----
Q ss_conf             50010000212100001213202220001--22105-8625643-24-77642--114325989999988630036----
Q gi|254781179|r   92 DKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLIS-PPYVIKP-LK-GGSSL--GIIVIKKDQSIPLDLLQSSSW----  160 (300)
Q Consensus        92 dK~~~k~~l~~~gIptp~~~~~~~~~~~~--~~~~~-~P~ivKP-~~-ggsS~--Gv~~v~~~~el~~~~~~~~~~----  160 (300)
T Consensus         4 HEYqAK~if~~YGiPvp~g~v~~s~~e~~~~~~~~g~~~~VvKaQVhaGGRGKAGGv~~a~s~ee~~~~a~~llg~~l~t   83 (389)
T TIGR01016         4 HEYQAKEIFAKYGIPVPEGEVATSVEEVEEIAEELGEGKVVVKAQVHAGGRGKAGGVKVAKSKEEALKAAEKLLGKELKT   83 (389)
T ss_pred             CHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHCCEEEE
T ss_conf             43558999984789678860041678999999970799789998773267112157689708799999999870891578


Q ss_pred             -------CCCCCCCCCCCCC-CCEEEEEECCCCC--CCE----------------------EEE-CCCCCCCCCCCCCCC
Q ss_conf             -------6885422333578-8457887314444--200----------------------220-255433331100001
Q gi|254781179|r  161 -------NHGDQLLIEQYVD-GIELTCGVMGDAS--LDV----------------------TEI-AVPKSDFYSYELKYS  207 (300)
Q Consensus       161 -------~~~~~vlVEefI~-G~E~~v~Vl~~~~--~~~----------------------~ei-~~~~~~~~dy~~Ky~  207 (300)
T Consensus        84 ~Qt~~~g~~VnkiliE~~~~I~kEyY~s~v~DR~~~~pv~maS~eGGvdIEEvA~~~Pe~I~k~~idp~~~~~pYq~R~~  163 (389)
T TIGR01016        84 FQTDPLGQPVNKILIEEKIDIDKEYYLSIVIDRSAKKPVIMASTEGGVDIEEVAEKSPEKIIKVAIDPLTGLLPYQAREL  163 (389)
T ss_pred             EECCCCCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHCCCCCEEEEEECCCCCCCCHHHHHH
T ss_conf             64078886344787326774120014779998047871799706778417899521957168887177777787899999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE---EEECCCCEEEEEEECC---------CCCC------C
Q ss_conf             12222458652116665544444445775348764579999---9976898399997472---------6588------8
Q gi|254781179|r  208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF---LFDPLSRKVFWLEINV---------QPGM------T  269 (300)
Q Consensus       208 ~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf---~~d~~~g~~~~lEvN~---------~PGl------t  269 (300)
T Consensus       164 a~~------~~l~~~~~~~~~~i~~~Ly~~F~e~Da~L~EINPLViT-~~G~L~alDAKl~~DDnALFRH~~l~~~~D~~  236 (389)
T TIGR01016       164 AKK------LGLEGELIKQVASIIKKLYQIFLEKDASLVEINPLVIT-KDGNLVALDAKLTIDDNALFRHPDLEEMEDYT  236 (389)
T ss_pred             HHH------CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEC-CCCCEEEEEEECCCCCCHHCCCCCHHHHCCCC
T ss_conf             997------08970577889999999999887537102545263687-89888998332244655100671168763888


Q ss_pred             HHHHHHHHHHHCCCCHHH
Q ss_conf             223899999983999899
Q gi|254781179|r  270 PVSIFPEMAAYAGYSFRE  287 (300)
Q Consensus       270 ~~s~~p~~~~~~G~s~~~  287 (300)
T Consensus       237 ~~~~~e~~A~~~gL~Yv~  254 (389)
T TIGR01016       237 QEDQLEVEAKQLGLNYVK  254 (389)
T ss_pred             CCCHHHHHHHHHCCCEEE
T ss_conf             777337999861883688