HHsearch alignment for GI: 254781179 and conserved domain: TIGR02144
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX; InterPro: IPR011870 The family of proteins found in this family include the characterised LysX from Thermus thermophilus which is part of a well-organised lysine biosynthesis gene cluster . LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this family contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterised in Escherichia coli, and acts by ATP-dependent condensation of S6 with glutamate residues .; GO: 0003824 catalytic activity, 0005524 ATP binding, 0009085 lysine biosynthetic process.
Probab=99.93 E-value=1.1e-25 Score=184.70 Aligned_cols=255 Identities=19% Similarity=0.212 Sum_probs=179.1
Q ss_pred HHHHHHHHHCCCEEEEECCCCCHHHH-----HHHCCCCEEEECCCCCCCCCC--HHHHHHHHHHHHCCCCCHHHHHHCCC
Q ss_conf 99999999879889996158656888-----875399899992548843431--02356664321002310023320365
Q gi|254781179|r 20 KACASALEDAGFKVSQIDVDRSVGLV-----LAHLKPDLAFNVLHGNFGEDG--LVQAILELLEIPYTHSGILASALSMD 92 (300)
Q Consensus 20 ~~i~~aL~~~g~~v~~id~~~~~~~~-----l~~~~~D~vf~~lhG~~gEdg--~iq~~le~~~ipy~Gs~~~~~~l~~d 92 (300)
T Consensus 13 KmL~e~l~~lg~~v~~i~~~~~~~~~~d~~i~~~~~~dv~i~R~V---S~~R~L~~a~~~E~~G~~~iN-~~~~i~~cgD 88 (289)
T TIGR02144 13 KMLLEELEKLGLQVRVIYVPELALPFGDLGIKELEDLDVAIIRNV---SQSRALYSAFLLEAVGVPTIN-SSHAIIACGD 88 (289)
T ss_pred HHHHHHHHHHCCCCEEEECCCEEECCCCCCCCHHCCCCEEEECHH---HHHHHHHHHHHHHHCCCEEEC-CHHHHHHHCC
T ss_conf 999999987289732662034022078856300037556898303---456799999999848971527-7589875046
Q ss_pred CHHCCCCCCCCEEECCCEEEECCCC--CHHHHHCCCCEEEEECCCCCCCC--EEEECCHHHHHHHHHHHCCC--CCCCCC
Q ss_conf 0010000212100001213202220--00122105862564324776421--14325989999988630036--688542
Q gi|254781179|r 93 KMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLG--IIVIKKDQSIPLDLLQSSSW--NHGDQL 166 (300)
Q Consensus 93 K~~~k~~l~~~gIptp~~~~~~~~~--~~~~~~~~~P~ivKP~~ggsS~G--v~~v~~~~el~~~~~~~~~~--~~~~~v 166 (300)
T Consensus 89 K~~T~~~L~~~gvP~P~t~~a~d~~~A~~~~e~lGYPvV~KP~~G--SWGRlV~~~~d~~~~~~llEh~e~~~~~~~~~~ 166 (289)
T TIGR02144 89 KIFTTLKLAKAGVPTPRTYIAFDREAALKAAEELGYPVVLKPVIG--SWGRLVSKIRDKDELESLLEHKEVLGGSQLKLY 166 (289)
T ss_pred HHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHCCCCEEEECCCC--CHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 188999999667889835898286899999997089889708888--437887640378898899999998679763337
Q ss_pred CCCCCC--CCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 233357--884578873144442002202554333311000011222245865211666554444444577534876457
Q gi|254781179|r 167 LIEQYV--DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 (300)
Q Consensus 167 lVEefI--~G~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~g~~ 244 (300)
T Consensus 167 y~QEfi~KPgRDIR~fViGd~~~~AIYR~~~P~~W~TNtA---rG--G~A~P~~~~~----e~~~La~kA~~avgg-~~~ 236 (289)
T TIGR02144 167 YVQEFINKPGRDIRVFVIGDEAIAAIYRYSEPNHWRTNTA---RG--GKAEPCKIDE----EVEELAVKAAEAVGG-EVV 236 (289)
T ss_pred EEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCHHHHHH---CC--CCCCCCCCCH----HHHHHHHHHHHHHCC-EEE
T ss_conf 9998871889608999997973167883388530255630---58--8447887687----689999999999788-278
Q ss_pred EEEEEEECCC----CEEEEEEECCCCCCCHHHHHHHHHHHCCCCHH-HHHHHHHHHH
Q ss_conf 9999997689----83999974726588822389999998399989-9999999975
Q gi|254781179|r 245 RSDFLFDPLS----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR-ELLLWMVEDA 296 (300)
Q Consensus 245 rvDf~~d~~~----g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~-~li~~ii~~A 296 (300)
T Consensus 237 ~iDi~Es~~rqndW~GlLV~EVN~~~EF-KN-----~~rvTGvNva~~l~~yav~~~ 287 (289)
T TIGR02144 237 GIDIVESKRRQNDWGGLLVNEVNGVPEF-KN-----TVRVTGVNVAEKLVEYAVELV 287 (289)
T ss_pred EEEEEECCCCCCCCCCEEEEEECCCCCC-CC-----CEEECCCCHHHHHHHHHHHHH
T ss_conf 9988643344544378689735689772-78-----577747453789999999984