Query gi|254781179|ref|YP_003065592.1| D-alanine--D-alanine ligase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 300
No_of_seqs 181 out of 6408
Neff 7.8
Searched_HMMs 39220
Date Mon May 30 07:04:51 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781179.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01205 D_ala_D_alaTIGR D-al 100.0 0 0 647.5 24.9 295 1-297 2-375 (375)
2 PRK01372 ddl D-alanine--D-alan 100.0 0 0 633.0 26.4 296 1-300 7-304 (304)
3 PRK01966 ddl D-alanyl-alanine 100.0 0 0 593.1 22.8 293 1-297 6-343 (344)
4 COG1181 DdlA D-alanine-D-alani 100.0 0 0 478.5 15.2 294 1-296 5-316 (317)
5 pfam07478 Dala_Dala_lig_C D-al 100.0 0 0 330.7 15.8 192 99-294 1-201 (201)
6 TIGR01369 CPSaseII_lrg carbamo 100.0 7E-39 1.8E-43 269.4 16.8 270 7-291 20-337 (1089)
7 PRK12815 carB carbamoyl phosph 100.0 9.6E-34 2.4E-38 236.5 19.7 270 7-291 21-324 (1068)
8 PRK05294 carB carbamoyl phosph 100.0 3.9E-33 1E-37 232.5 19.9 276 7-292 21-326 (1063)
9 PRK02186 argininosuccinate lya 100.0 6.5E-33 1.7E-37 231.1 17.9 259 18-292 15-301 (892)
10 TIGR02712 urea_carbox urea car 100.0 4.2E-33 1.1E-37 232.3 16.9 263 19-298 13-317 (1226)
11 PRK08654 pyruvate carboxylase 100.0 8.6E-33 2.2E-37 230.3 16.5 265 19-298 14-317 (497)
12 PRK08462 biotin carboxylase; V 100.0 2.1E-32 5.4E-37 227.8 17.0 266 19-297 16-320 (446)
13 COG0458 CarB Carbamoylphosphat 100.0 8.2E-32 2.1E-36 224.1 18.8 272 17-292 16-325 (400)
14 PRK12767 carbamoyl phosphate s 100.0 1.2E-30 3.1E-35 216.6 20.6 248 19-293 12-291 (325)
15 pfam02786 CPSase_L_D2 Carbamoy 100.0 7.5E-32 1.9E-36 224.3 13.6 189 92-289 1-199 (211)
16 PRK05586 biotin carboxylase; V 100.0 8E-31 2.1E-35 217.7 16.2 266 18-298 13-318 (447)
17 TIGR00514 accC acetyl-CoA carb 100.0 5.8E-31 1.5E-35 218.6 15.3 266 19-299 14-321 (451)
18 PRK12833 acetyl-CoA carboxylas 100.0 6.2E-31 1.6E-35 218.5 15.0 265 18-297 16-320 (458)
19 TIGR01369 CPSaseII_lrg carbamo 100.0 1.1E-30 2.8E-35 216.8 15.7 269 7-293 587-885 (1089)
20 PRK08591 acetyl-CoA carboxylas 100.0 1.6E-30 4E-35 215.8 16.5 266 18-298 13-317 (449)
21 PRK06111 acetyl-CoA carboxylas 100.0 2.5E-30 6.4E-35 214.5 17.1 265 18-297 13-317 (449)
22 COG0439 AccC Biotin carboxylas 100.0 3.3E-30 8.5E-35 213.7 16.8 265 18-297 13-317 (449)
23 TIGR01235 pyruv_carbox pyruvat 100.0 2E-30 5E-35 215.2 15.3 237 19-265 11-297 (1169)
24 PRK12999 pyruvate carboxylase; 100.0 4.8E-30 1.2E-34 212.7 15.6 266 19-298 17-322 (1147)
25 PRK07178 acetyl-CoA carboxylas 100.0 8E-30 2E-34 211.3 15.9 264 19-298 14-316 (471)
26 pfam08443 RimK RimK-like ATP-g 100.0 3.3E-30 8.5E-35 213.7 13.6 181 90-290 1-187 (190)
27 PRK07206 hypothetical protein; 100.0 1E-28 2.6E-33 204.2 20.8 262 17-293 12-313 (415)
28 PRK08463 acetyl-CoA carboxylas 100.0 2.4E-29 6E-34 208.3 16.6 265 19-298 14-318 (478)
29 PRK05294 carB carbamoyl phosph 100.0 5.7E-29 1.5E-33 205.8 17.4 267 7-292 567-862 (1063)
30 PRK12815 carB carbamoyl phosph 100.0 2.4E-28 6E-33 201.9 20.2 266 7-292 568-860 (1068)
31 PRK09288 purT phosphoribosylgl 100.0 5.3E-28 1.4E-32 199.6 20.2 244 1-270 15-289 (395)
32 TIGR00768 rimK_fam alpha-L-glu 100.0 3.9E-28 9.8E-33 200.5 16.8 258 16-290 17-318 (321)
33 PRK10446 ribosomal protein S6 100.0 3.2E-27 8.1E-32 194.6 18.9 269 1-296 3-290 (300)
34 KOG0238 consensus 100.0 6.3E-27 1.6E-31 192.7 16.5 266 19-298 10-314 (670)
35 COG4770 Acetyl/propionyl-CoA c 100.0 1.5E-26 3.9E-31 190.2 17.2 267 19-298 14-318 (645)
36 COG0027 PurT Formate-dependent 99.9 3.3E-26 8.4E-31 188.2 17.4 249 18-287 23-315 (394)
37 PRK06019 phosphoribosylaminoim 99.9 3E-25 7.6E-30 182.0 20.7 254 1-285 10-299 (377)
38 pfam02222 ATP-grasp ATP-grasp 99.9 2.4E-26 6E-31 189.1 13.0 154 100-270 1-164 (171)
39 pfam01071 GARS_A Phosphoribosy 99.9 2.1E-26 5.3E-31 189.4 12.6 174 92-267 2-189 (193)
40 COG1038 PycA Pyruvate carboxyl 99.9 2.2E-25 5.6E-30 182.8 16.6 238 19-266 19-299 (1149)
41 TIGR02144 LysX_arch Lysine bio 99.9 1.1E-25 2.9E-30 184.7 12.6 255 20-296 13-287 (289)
42 TIGR01161 purK phosphoribosyla 99.9 5.1E-24 1.3E-28 174.1 16.5 261 1-294 2-310 (386)
43 pfam02655 ATP-grasp_3 ATP-gras 99.9 3.1E-24 7.8E-29 175.5 11.1 155 90-266 1-157 (160)
44 PRK13789 phosphoribosylamine-- 99.9 3.2E-22 8.2E-27 162.6 19.9 275 2-293 7-319 (426)
45 pfam01820 Dala_Dala_lig_N D-al 99.9 4.9E-24 1.2E-28 174.2 7.2 82 1-82 3-110 (110)
46 PRK00885 phosphoribosylamine-- 99.9 4.1E-21 1E-25 155.5 20.7 273 3-294 4-313 (424)
47 PRK06849 hypothetical protein; 99.9 2.5E-21 6.3E-26 156.9 16.9 235 2-267 7-277 (387)
48 PRK13790 phosphoribosylamine-- 99.9 3.6E-21 9.1E-26 155.8 17.4 260 3-276 4-297 (415)
49 COG0189 RimK Glutathione synth 99.9 6.1E-21 1.6E-25 154.3 18.4 266 13-298 13-316 (318)
50 COG0026 PurK Phosphoribosylami 99.9 3.8E-21 9.6E-26 155.7 16.6 239 1-271 4-272 (375)
51 KOG0369 consensus 99.9 6E-21 1.5E-25 154.4 15.1 263 19-288 45-356 (1176)
52 TIGR00877 purD phosphoribosyla 99.9 2.2E-20 5.5E-25 150.8 17.2 279 3-297 4-339 (459)
53 TIGR02068 cya_phycin_syn cyano 99.8 1.5E-21 3.9E-26 158.2 6.9 185 82-269 208-458 (876)
54 COG0151 PurD Phosphoribosylami 99.8 3.4E-19 8.7E-24 143.2 18.4 252 2-267 3-290 (428)
55 PRK06395 phosphoribosylamine-- 99.8 1.1E-19 2.7E-24 146.4 15.4 274 2-294 5-318 (435)
56 KOG0368 consensus 99.8 7.4E-20 1.9E-24 147.4 12.8 210 47-265 134-376 (2196)
57 PRK02471 bifunctional glutamat 99.8 6.1E-20 1.6E-24 147.9 12.3 189 83-275 479-735 (753)
58 TIGR03103 trio_acet_GNAT GNAT- 99.8 1.4E-20 3.6E-25 152.0 8.2 189 83-275 288-531 (547)
59 KOG0370 consensus 99.8 9.1E-19 2.3E-23 140.4 12.8 269 7-293 932-1228(1435)
60 PRK05784 phosphoribosylamine-- 99.8 2.5E-17 6.3E-22 131.2 17.7 273 2-293 3-333 (485)
61 COG1821 Predicted ATP-utilizin 99.8 5.1E-18 1.3E-22 135.6 12.5 213 16-267 20-257 (307)
62 KOG0370 consensus 99.8 3.7E-18 9.4E-23 136.5 8.7 265 10-286 394-687 (1435)
63 COG3919 Predicted ATP-grasp en 99.6 5.7E-15 1.4E-19 116.1 11.6 203 70-288 94-305 (415)
64 COG2232 Predicted ATP-dependen 99.6 6.4E-14 1.6E-18 109.3 11.8 239 19-292 21-296 (389)
65 KOG0237 consensus 99.5 9.1E-13 2.3E-17 101.9 16.2 253 2-270 5-299 (788)
66 PRK05246 glutathione synthetas 99.5 5E-12 1.3E-16 97.2 15.7 253 18-299 20-315 (316)
67 TIGR01142 purT phosphoribosylg 99.5 1.1E-12 2.9E-17 101.3 11.2 236 17-268 9-285 (407)
68 pfam02955 GSH-S_ATP Prokaryoti 99.4 2.1E-12 5.4E-17 99.6 11.5 155 106-283 11-175 (176)
69 TIGR02291 rimK_rel_E_lig alpha 99.4 7.1E-12 1.8E-16 96.2 9.9 186 91-285 36-284 (320)
70 pfam05770 Ins134_P3_kin Inosit 99.3 5.5E-10 1.4E-14 84.1 16.9 232 21-271 26-294 (307)
71 PRK12458 glutathione synthetas 99.1 1.2E-08 3.2E-13 75.4 16.6 219 50-296 85-330 (349)
72 PRK06524 biotin carboxylase-li 99.1 2.4E-08 6.2E-13 73.5 15.5 212 42-267 82-311 (480)
73 PRK13277 5-formaminoimidazole- 99.0 1E-07 2.6E-12 69.6 18.4 271 17-296 23-352 (363)
74 PRK13278 purP 5-formaminoimida 99.0 4.1E-08 1E-12 72.1 15.5 268 17-296 27-345 (356)
75 COG1759 5-formaminoimidazole-4 99.0 1.3E-07 3.3E-12 68.9 16.2 269 17-296 27-350 (361)
76 TIGR01016 sucCoAbeta succinyl- 98.9 1.7E-08 4.4E-13 74.5 10.3 189 92-287 4-254 (389)
77 pfam03133 TTL Tubulin-tyrosine 98.8 3.2E-07 8.1E-12 66.4 13.5 160 107-275 44-267 (291)
78 KOG3895 consensus 98.3 2.3E-06 6E-11 60.8 7.5 207 47-270 152-373 (488)
79 PRK00696 sucC succinyl-CoA syn 98.3 5.1E-06 1.3E-10 58.6 9.1 163 92-261 4-213 (388)
80 TIGR01380 glut_syn glutathione 98.3 5.4E-06 1.4E-10 58.5 8.9 258 9-296 14-321 (322)
81 COG0045 SucC Succinyl-CoA synt 98.3 1E-05 2.5E-10 56.8 9.5 165 92-262 4-213 (387)
82 pfam08442 ATP-grasp_2 ATP-gras 98.2 8.4E-06 2.1E-10 57.3 8.3 95 92-186 3-116 (202)
83 pfam02750 Synapsin_C Synapsin, 97.7 0.00068 1.7E-08 45.0 10.5 149 102-265 28-177 (203)
84 KOG1057 consensus 97.7 1.4E-05 3.6E-10 55.8 1.5 179 68-265 107-322 (1018)
85 KOG2156 consensus 97.4 0.00052 1.3E-08 45.8 6.4 69 221-296 440-524 (662)
86 KOG2157 consensus 96.8 0.0034 8.7E-08 40.6 6.0 50 124-173 198-250 (497)
87 pfam00289 CPSase_L_chain Carba 95.6 0.033 8.5E-07 34.2 5.6 67 19-86 13-108 (109)
88 TIGR01435 glu_cys_lig_rel puta 95.1 0.008 2E-07 38.2 1.0 189 86-276 484-738 (754)
89 pfam06849 DUF1246 Protein of u 94.9 0.048 1.2E-06 33.2 4.7 92 17-110 7-122 (124)
90 pfam07065 D123 D123. This fami 94.6 0.34 8.7E-06 27.7 8.3 135 120-271 79-242 (297)
91 COG1181 DdlA D-alanine-D-alani 93.0 0.02 5.2E-07 35.6 -0.3 105 86-192 45-158 (317)
92 PRK09496 trkA potassium transp 91.4 0.71 1.8E-05 25.7 6.0 61 3-78 4-64 (455)
93 TIGR02023 BchP-ChlP geranylger 91.0 0.41 1E-05 27.2 4.5 51 1-78 3-54 (408)
94 COG0569 TrkA K+ transport syst 90.8 1.4 3.4E-05 23.9 7.1 55 18-78 11-65 (225)
95 PRK05693 short chain dehydroge 90.6 1.4 3.6E-05 23.8 7.2 33 1-40 3-35 (274)
96 pfam02514 CobN-Mg_chel CobN/Ma 90.4 1.2 3.1E-05 24.2 6.4 81 1-82 71-160 (1064)
97 pfam02844 GARS_N Phosphoribosy 88.9 1.7 4.4E-05 23.2 6.2 75 3-89 3-98 (99)
98 PRK07832 short chain dehydroge 88.6 2 5.1E-05 22.8 7.5 37 2-45 3-39 (272)
99 pfam00731 AIRC AIR carboxylase 88.3 1.9 4.8E-05 23.0 6.1 97 1-107 3-109 (150)
100 cd00532 MGS-like MGS-like doma 88.2 1.6 4E-05 23.5 5.6 62 24-85 36-108 (112)
101 PRK09072 short chain dehydroge 87.6 2.3 5.9E-05 22.4 7.6 38 1-45 7-44 (262)
102 COG0041 PurE Phosphoribosylcar 87.5 2.4 6E-05 22.3 7.1 105 1-113 5-117 (162)
103 TIGR01326 OAH_OAS_sulfhy O-ace 87.1 1.1 2.9E-05 24.4 4.4 66 18-107 109-178 (434)
104 TIGR02667 moaB_proteo molybden 87.0 0.84 2.1E-05 25.2 3.7 55 17-71 22-85 (163)
105 pfam02142 MGS MGS-like domain. 86.8 1.8 4.5E-05 23.1 5.3 39 42-80 50-91 (92)
106 PRK13435 response regulator; P 86.2 2.3 5.8E-05 22.5 5.5 49 19-67 14-63 (141)
107 cd01424 MGS_CPS_II Methylglyox 86.1 1.7 4.4E-05 23.2 4.9 64 19-82 15-101 (110)
108 PRK12769 putative oxidoreducta 86.0 1.6 4.1E-05 23.4 4.7 30 1-39 330-359 (654)
109 COG1104 NifS Cysteine sulfinat 85.9 2.8 7.2E-05 21.8 6.1 67 9-79 98-174 (386)
110 PRK05993 short chain dehydroge 85.7 2.9 7.4E-05 21.8 6.9 41 1-48 6-46 (277)
111 COG1489 SfsA DNA-binding prote 85.7 1.2 3E-05 24.3 3.8 133 161-295 14-166 (235)
112 PRK12809 putative oxidoreducta 84.6 2.1 5.3E-05 22.7 4.7 72 1-84 313-405 (639)
113 PRK12814 putative NADPH-depend 84.4 2.8 7E-05 21.9 5.3 30 1-39 196-225 (652)
114 pfam04321 RmlD_sub_bind RmlD s 84.4 3.3 8.5E-05 21.4 6.6 49 3-58 2-57 (284)
115 PRK06182 short chain dehydroge 84.3 3.4 8.6E-05 21.4 6.8 34 1-41 5-38 (273)
116 pfam03738 GSP_synth Glutathion 84.2 3.4 8.6E-05 21.3 6.9 81 85-174 247-328 (372)
117 PRK12771 putative glutamate sy 84.1 2.1 5.4E-05 22.6 4.6 30 1-39 140-169 (560)
118 PRK06194 hypothetical protein; 83.2 3.7 9.5E-05 21.1 7.2 37 1-44 8-44 (301)
119 pfam02254 TrkA_N TrkA-N domain 82.9 3.8 9.8E-05 21.0 6.1 59 3-78 2-60 (115)
120 PRK13984 putative oxidoreducta 82.4 3.6 9.1E-05 21.2 5.2 30 1-39 286-315 (604)
121 PRK06181 short chain dehydroge 82.2 4.1 0.0001 20.8 7.2 38 1-45 3-40 (263)
122 TIGR01942 pcnB poly(A) polymer 82.0 0.81 2.1E-05 25.3 1.7 50 9-58 4-58 (448)
123 PRK06180 short chain dehydroge 81.8 4.2 0.00011 20.7 7.4 41 1-48 6-46 (277)
124 PRK05650 short chain dehydroge 81.6 4.3 0.00011 20.7 7.8 37 2-45 3-39 (270)
125 COG1004 Ugd Predicted UDP-gluc 81.3 4.4 0.00011 20.6 6.6 33 19-51 12-44 (414)
126 PRK05653 fabG 3-ketoacyl-(acyl 80.8 4.6 0.00012 20.5 7.8 34 1-41 7-40 (246)
127 PRK06139 short chain dehydroge 80.6 4.6 0.00012 20.5 7.0 38 1-45 8-45 (324)
128 cd03817 GT1_UGDG_like This fam 80.4 4.7 0.00012 20.4 7.3 78 1-81 2-113 (374)
129 PRK07825 short chain dehydroge 79.6 5 0.00013 20.3 7.1 41 1-48 7-47 (273)
130 KOG1447 consensus 79.4 5.1 0.00013 20.2 5.8 15 23-37 28-42 (412)
131 PRK12446 N-acetylglucosaminyl 79.4 5.1 0.00013 20.2 7.0 35 2-39 4-38 (352)
132 PRK06179 short chain dehydroge 79.3 5.1 0.00013 20.2 6.6 32 1-39 6-37 (270)
133 PRK12810 gltD glutamate syntha 79.2 4.9 0.00012 20.3 5.0 31 1-40 146-176 (472)
134 cd01423 MGS_CPS_I_III Methylgl 79.1 5.2 0.00013 20.2 7.9 60 24-83 37-108 (116)
135 PRK05872 short chain dehydroge 79.0 5.2 0.00013 20.1 7.2 41 1-48 11-51 (296)
136 PRK07109 short chain dehydroge 78.8 5.3 0.00013 20.1 7.3 35 1-42 10-44 (338)
137 PRK08267 short chain dehydroge 78.6 5.3 0.00014 20.1 7.3 40 1-47 3-42 (258)
138 PRK12826 3-ketoacyl-(acyl-carr 78.3 5.5 0.00014 20.0 8.0 34 1-41 8-41 (253)
139 PRK07454 short chain dehydroge 77.9 5.6 0.00014 19.9 7.5 37 1-44 8-44 (241)
140 PRK10538 3-hydroxy acid dehydr 77.7 5.7 0.00014 19.9 7.7 40 1-47 2-41 (248)
141 PRK05855 short chain dehydroge 76.6 6.1 0.00015 19.7 7.7 15 281-295 530-544 (582)
142 COG0496 SurE Predicted acid ph 76.0 6.3 0.00016 19.6 4.8 58 20-78 17-119 (252)
143 PRK10669 putative cation:proto 75.9 6.4 0.00016 19.6 6.5 16 15-30 125-140 (558)
144 pfam11379 DUF3182 Protein of u 75.4 4.1 0.0001 20.8 3.7 59 124-182 135-195 (355)
145 PRK11749 putative oxidoreducta 74.7 6.5 0.00017 19.5 4.6 30 1-39 143-172 (460)
146 pfam03749 SfsA Sugar fermentat 74.6 6.4 0.00016 19.6 4.6 50 243-293 102-152 (215)
147 TIGR03315 Se_ygfK putative sel 74.4 7 0.00018 19.3 5.8 30 1-39 540-569 (1012)
148 cd04962 GT1_like_5 This family 74.0 7.1 0.00018 19.3 5.8 30 1-37 3-36 (371)
149 PRK08263 short chain dehydroge 73.6 7.3 0.00019 19.2 7.3 42 1-49 5-46 (275)
150 PRK05989 cobN cobaltochelatase 73.4 7.3 0.00019 19.2 5.6 64 18-81 214-287 (1251)
151 PRK12321 cobN cobaltochelatase 73.4 6.9 0.00018 19.4 4.5 62 18-81 217-287 (1101)
152 PRK00726 murG N-acetylglucosam 72.8 7.6 0.00019 19.1 6.9 32 3-37 5-36 (359)
153 TIGR00408 proS_fam_I prolyl-tR 72.8 5.6 0.00014 19.9 3.9 28 221-249 323-350 (533)
154 TIGR01986 glut_syn_euk glutath 72.5 3.2 8.2E-05 21.5 2.6 15 229-243 449-463 (507)
155 TIGR01162 purE phosphoribosyla 71.8 8 0.0002 19.0 6.8 102 1-110 1-111 (159)
156 pfam06690 DUF1188 Protein of u 71.7 4.9 0.00013 20.3 3.4 36 2-46 45-80 (252)
157 cd03785 GT1_MurG MurG is an N- 71.7 8 0.0002 18.9 6.9 32 3-37 3-34 (350)
158 PRK12831 putative oxidoreducta 71.5 8.1 0.00021 18.9 6.1 31 1-40 143-173 (464)
159 smart00851 MGS MGS-like domain 71.3 5.8 0.00015 19.8 3.7 58 23-80 23-89 (90)
160 pfam02310 B12-binding B12 bind 71.2 5.2 0.00013 20.1 3.4 38 19-56 17-57 (121)
161 PRK07024 short chain dehydroge 70.7 8.4 0.00022 18.8 7.6 39 2-47 5-43 (256)
162 PRK05876 short chain dehydroge 70.6 8.5 0.00022 18.8 7.4 36 1-43 8-43 (275)
163 TIGR02468 sucrsPsyn_pln sucros 70.5 1.4 3.5E-05 23.9 0.3 46 52-102 308-355 (1072)
164 cd03814 GT1_like_2 This family 70.2 8.6 0.00022 18.7 7.0 79 1-81 2-112 (364)
165 PRK12342 putative electron tra 70.2 8.7 0.00022 18.7 6.6 56 42-98 101-157 (254)
166 PRK06914 short chain dehydroge 70.0 8.7 0.00022 18.7 7.4 34 1-41 5-38 (280)
167 cd02696 MurNAc-LAA N-acetylmur 69.7 8.9 0.00023 18.7 5.9 55 9-64 21-81 (172)
168 PRK07666 fabG 3-ketoacyl-(acyl 69.4 9 0.00023 18.6 7.4 37 1-44 8-44 (238)
169 PRK12384 sorbitol-6-phosphate 69.0 9.2 0.00023 18.6 8.0 35 1-42 4-38 (259)
170 COG1105 FruK Fructose-1-phosph 68.8 9.2 0.00024 18.5 4.9 18 19-36 39-56 (310)
171 pfam02571 CbiJ Precorrin-6x re 68.7 9.3 0.00024 18.5 6.2 91 3-110 4-97 (246)
172 KOG4022 consensus 68.7 9.3 0.00024 18.5 6.3 59 2-67 6-89 (236)
173 COG0754 Gsp Glutathionylspermi 68.7 9.3 0.00024 18.5 4.9 80 89-173 262-341 (387)
174 PRK08643 acetoin reductase; Va 68.7 9.3 0.00024 18.5 8.0 37 1-44 4-40 (256)
175 PRK10816 DNA-binding transcrip 68.5 9.4 0.00024 18.5 4.5 46 11-58 7-52 (223)
176 PRK10766 DNA-binding transcrip 68.3 9.5 0.00024 18.5 5.6 40 19-58 15-54 (224)
177 PRK06482 short chain dehydroge 68.2 9.5 0.00024 18.5 7.5 33 1-40 4-36 (276)
178 COG2081 Predicted flavoprotein 68.0 5.3 0.00013 20.1 2.9 69 1-80 6-96 (408)
179 cd02068 radical_SAM_B12_BD B12 67.6 9.8 0.00025 18.4 4.5 38 19-56 5-45 (127)
180 TIGR01368 CPSaseIIsmall carbam 67.3 9.9 0.00025 18.4 6.3 10 175-184 195-204 (383)
181 PRK13856 two-component respons 66.8 10 0.00026 18.3 5.2 46 11-58 8-53 (241)
182 PRK05849 hypothetical protein; 66.7 10 0.00026 18.3 9.9 154 105-266 25-217 (782)
183 PRK07326 short chain dehydroge 66.7 10 0.00026 18.3 7.2 38 1-45 7-44 (235)
184 PRK07102 short chain dehydroge 66.5 10 0.00026 18.2 7.1 36 2-44 4-39 (243)
185 PRK03562 glutathione-regulated 66.4 10 0.00026 18.2 6.0 60 61-120 406-476 (615)
186 TIGR00715 precor6x_red precorr 66.2 10 0.00027 18.2 6.2 27 2-36 3-30 (260)
187 PRK06841 short chain dehydroge 66.2 10 0.00027 18.2 7.8 42 1-49 17-58 (255)
188 PRK09291 short chain dehydroge 65.7 11 0.00027 18.1 7.7 33 1-40 4-36 (257)
189 PRK12779 putative bifunctional 65.0 11 0.00028 18.1 4.8 29 1-38 309-337 (944)
190 PRK10161 transcriptional regul 64.8 11 0.00028 18.0 5.1 46 11-58 9-54 (229)
191 TIGR01829 AcAcCoA_reduct aceto 64.7 9.1 0.00023 18.6 3.6 164 1-185 2-182 (244)
192 pfam03486 HI0933_like HI0933-l 63.7 1.6 4E-05 23.5 -0.5 33 1-42 3-35 (405)
193 CHL00148 orf27 Ycf27; Reviewed 63.6 12 0.0003 17.9 5.3 40 19-58 19-58 (240)
194 pfam06973 DUF1297 Domain of un 63.2 12 0.0003 17.9 10.2 131 164-296 21-177 (188)
195 TIGR01318 gltD_gamma_fam gluta 63.1 12 0.0003 17.8 5.1 31 1-40 146-176 (480)
196 PRK13932 stationary phase surv 63.0 6.6 0.00017 19.5 2.6 31 48-78 90-128 (258)
197 TIGR02026 BchE magnesium-proto 63.0 12 0.0003 17.8 4.5 37 20-56 27-70 (506)
198 KOG2983 consensus 63.0 12 0.00031 17.8 6.2 87 171-274 173-260 (334)
199 pfam03033 Glyco_transf_28 Glyc 62.9 12 0.00031 17.8 7.8 49 3-55 2-50 (136)
200 PRK10701 DNA-binding transcrip 62.7 12 0.00031 17.8 5.2 40 19-58 14-53 (240)
201 PRK10336 DNA-binding transcrip 62.7 12 0.00031 17.8 4.3 45 11-57 7-51 (219)
202 pfam02233 PNTB NAD(P) transhyd 62.7 8.2 0.00021 18.9 3.0 19 87-105 259-277 (464)
203 PRK08213 gluconate 5-dehydroge 62.1 12 0.00032 17.7 8.3 35 1-42 14-48 (259)
204 cd01743 GATase1_Anthranilate_S 62.0 12 0.00032 17.7 6.3 61 19-81 11-76 (184)
205 PRK09853 putative selenate red 61.8 13 0.00032 17.7 5.5 30 1-39 553-582 (1032)
206 PRK09836 DNA-binding transcrip 61.0 13 0.00033 17.6 4.4 40 19-58 13-52 (226)
207 PRK11517 transcriptional regul 59.7 14 0.00035 17.5 5.5 40 19-58 13-52 (223)
208 PRK08177 short chain dehydroge 59.7 14 0.00035 17.5 6.6 33 1-40 3-35 (225)
209 pfam01946 Thi4 Thi4 family. Th 59.5 13 0.00033 17.6 3.6 30 1-39 20-49 (229)
210 TIGR00090 TIGR00090 iojap homo 59.4 10 0.00026 18.3 3.0 55 2-59 62-117 (155)
211 PHA02117 glutathionylspermidin 59.3 14 0.00035 17.4 5.5 45 125-173 305-349 (395)
212 TIGR01862 N2-ase-Ialpha nitrog 58.4 2 5.2E-05 22.7 -0.7 38 219-264 405-442 (510)
213 PRK06125 short chain dehydroge 57.8 15 0.00037 17.3 8.2 37 1-44 9-45 (259)
214 PRK03659 glutathione-regulated 57.7 15 0.00038 17.2 6.6 59 61-119 407-476 (602)
215 pfam04556 DpnII DpnII restrict 57.5 12 0.00031 17.7 3.2 24 242-266 192-215 (284)
216 PRK10710 DNA-binding transcrip 57.2 15 0.00038 17.2 5.4 41 18-58 22-62 (240)
217 PRK11083 DNA-binding response 56.9 15 0.00039 17.2 5.2 39 19-57 16-54 (229)
218 TIGR01316 gltA glutamate synth 56.9 15 0.00039 17.2 4.8 28 1-37 145-172 (462)
219 TIGR01317 GOGAT_sm_gam glutama 56.8 15 0.00039 17.2 4.4 29 1-38 154-182 (517)
220 PRK05670 anthranilate synthase 56.7 15 0.00039 17.1 6.4 61 19-81 12-77 (192)
221 PRK09468 ompR osmolarity respo 56.3 16 0.0004 17.1 5.4 40 19-58 18-57 (239)
222 PRK12409 D-amino acid dehydrog 56.3 16 0.0004 17.1 4.2 31 1-40 4-34 (410)
223 cd00578 L-fuc_L-ara-isomerases 56.3 16 0.0004 17.1 7.1 79 1-80 3-92 (452)
224 PRK00347 sugar fermentation st 56.3 6.9 0.00018 19.3 1.8 20 244-263 117-136 (234)
225 PRK00758 GMP synthase subunit 56.0 16 0.0004 17.1 7.7 69 1-81 2-72 (184)
226 PRK08265 short chain dehydroge 55.8 16 0.0004 17.0 7.9 40 1-47 8-47 (261)
227 PRK07890 short chain dehydroge 55.7 16 0.0004 17.0 7.7 34 1-41 7-40 (258)
228 pfam00072 Response_reg Respons 55.7 16 0.00041 17.0 4.6 40 18-57 10-49 (111)
229 PRK04885 ppnK inorganic polyph 55.4 16 0.00041 17.0 4.3 52 14-83 12-68 (265)
230 TIGR01284 alt_nitrog_alph nitr 55.4 2.9 7.4E-05 21.8 -0.3 40 52-92 210-256 (468)
231 TIGR02299 HpaE 5-carboxymethyl 55.2 7.9 0.0002 19.0 1.9 68 50-121 193-265 (494)
232 PRK10529 DNA-binding transcrip 55.2 16 0.00041 17.0 5.1 40 18-57 13-52 (225)
233 cd03109 DTBS Dethiobiotin synt 54.8 16 0.00042 16.9 4.2 82 15-111 13-103 (134)
234 PRK08057 cobalt-precorrin-6x r 54.7 16 0.00042 16.9 5.4 89 3-111 5-96 (241)
235 PRK07677 short chain dehydroge 54.7 17 0.00042 16.9 7.6 34 1-41 5-38 (254)
236 LOAD_surE consensus 53.9 17 0.00043 16.9 5.3 22 20-41 17-38 (192)
237 PRK11173 two-component respons 53.6 17 0.00044 16.8 5.2 40 19-58 16-55 (237)
238 PRK09186 flagellin modificatio 53.4 17 0.00044 16.8 7.8 35 1-42 6-40 (255)
239 PRK05557 fabG 3-ketoacyl-(acyl 53.3 17 0.00044 16.8 8.1 33 1-40 7-39 (248)
240 PRK10643 DNA-binding transcrip 53.1 17 0.00045 16.8 4.5 42 18-59 12-53 (222)
241 PRK13931 stationary phase surv 53.1 17 0.00045 16.8 6.0 25 16-40 16-40 (261)
242 PRK13394 3-hydroxybutyrate deh 53.0 18 0.00045 16.8 7.8 35 1-42 9-43 (262)
243 PRK06101 short chain dehydroge 53.0 18 0.00045 16.8 6.6 41 2-49 4-44 (241)
244 pfam01370 Epimerase NAD depend 52.9 18 0.00045 16.8 7.3 49 3-58 2-73 (235)
245 PRK09242 tropinone reductase; 52.6 18 0.00045 16.7 5.3 35 1-42 12-46 (258)
246 PRK07577 short chain dehydroge 52.6 18 0.00045 16.7 8.1 31 1-38 5-35 (234)
247 TIGR03206 benzo_BadH 2-hydroxy 52.5 18 0.00046 16.7 7.8 37 1-44 5-41 (250)
248 pfam00743 FMO-like Flavin-bind 52.0 18 0.00046 16.7 4.0 37 1-46 4-40 (532)
249 cd00885 cinA Competence-damage 52.0 18 0.00046 16.7 6.2 63 18-82 20-91 (170)
250 PRK00346 surE stationary phase 51.8 14 0.00036 17.3 2.8 19 20-39 17-35 (246)
251 cd03823 GT1_ExpE7_like This fa 51.6 18 0.00047 16.6 7.6 20 18-37 20-39 (359)
252 PRK01747 mnmC 5-methylaminomet 51.6 18 0.00047 16.6 4.2 31 1-40 259-289 (660)
253 COG1154 Dxs Deoxyxylulose-5-ph 51.6 18 0.00047 16.6 5.4 12 71-82 238-249 (627)
254 COG0505 CarA Carbamoylphosphat 51.5 19 0.00047 16.6 5.9 13 66-78 95-107 (368)
255 PRK03670 competence damage-ind 51.5 19 0.00047 16.6 5.4 62 19-82 22-93 (252)
256 PRK04176 ribulose-1,5-biphosph 51.4 19 0.00047 16.6 4.8 20 19-38 37-56 (257)
257 PRK06124 gluconate 5-dehydroge 51.3 19 0.00048 16.6 5.2 34 1-41 16-49 (259)
258 PRK08220 2,3-dihydroxybenzoate 50.6 19 0.00049 16.5 7.9 33 1-40 10-42 (253)
259 pfam00117 GATase Glutamine ami 50.3 19 0.00049 16.5 6.6 38 19-56 10-47 (187)
260 cd03821 GT1_Bme6_like This fam 50.2 19 0.00049 16.5 7.1 22 16-37 17-38 (375)
261 cd07129 ALDH_KGSADH Alpha-Keto 50.2 12 0.0003 17.9 2.1 58 50-109 166-229 (454)
262 PRK07062 short chain dehydroge 50.0 20 0.0005 16.5 7.9 34 1-41 10-43 (265)
263 PRK08589 short chain dehydroge 49.9 20 0.0005 16.5 5.4 39 1-46 8-46 (272)
264 pfam03917 GSH_synth_ATP Eukary 49.8 8.8 0.00023 18.7 1.4 13 128-140 357-369 (469)
265 COG4017 Uncharacterized protei 49.5 9.4 0.00024 18.5 1.5 24 18-42 56-79 (254)
266 PRK07233 hypothetical protein; 49.3 20 0.00051 16.4 4.1 32 1-41 2-33 (430)
267 PRK13702 replication protein; 49.2 20 0.00051 16.4 3.5 28 273-300 55-82 (82)
268 PRK07074 short chain dehydroge 49.1 20 0.00051 16.4 7.7 38 1-45 4-41 (256)
269 PRK05717 oxidoreductase; Valid 49.1 20 0.00051 16.4 5.5 40 1-47 12-51 (255)
270 PRK07231 fabG 3-ketoacyl-(acyl 49.1 20 0.00051 16.4 5.3 37 1-44 8-44 (250)
271 PRK07775 short chain dehydroge 49.1 20 0.00052 16.4 7.5 33 1-40 12-44 (275)
272 pfam08886 GshA Glutamate-cyste 49.0 20 0.00052 16.4 4.1 51 126-176 260-318 (404)
273 PRK06138 short chain dehydroge 48.9 20 0.00052 16.4 8.0 38 1-45 7-44 (252)
274 cd01976 Nitrogenase_MoFe_alpha 48.6 21 0.00052 16.3 6.4 22 88-109 182-203 (421)
275 TIGR02154 PhoB phosphate regul 48.6 21 0.00052 16.3 3.2 119 19-178 15-138 (226)
276 cd01075 NAD_bind_Leu_Phe_Val_D 48.4 21 0.00053 16.3 4.9 22 19-40 40-61 (200)
277 PRK12745 3-ketoacyl-(acyl-carr 48.4 21 0.00053 16.3 4.9 33 1-40 7-39 (259)
278 TIGR03325 BphB_TodD cis-2,3-di 48.4 21 0.00053 16.3 6.3 45 1-52 7-51 (262)
279 PRK07479 consensus 48.1 21 0.00053 16.3 5.2 36 1-43 7-42 (252)
280 COG0707 MurG UDP-N-acetylgluco 47.7 21 0.00054 16.2 6.5 34 2-38 3-37 (357)
281 PRK12428 3-alpha-hydroxysteroi 47.5 21 0.00054 16.2 4.0 33 1-40 7-39 (261)
282 PRK06227 consensus 47.1 22 0.00055 16.2 7.9 35 1-42 7-41 (256)
283 TIGR02028 ChlP geranylgeranyl 47.0 22 0.00055 16.2 3.4 29 1-38 3-31 (401)
284 TIGR00600 rad2 DNA excision re 46.7 8.4 0.00021 18.8 0.9 110 68-197 863-975 (1127)
285 PRK07067 sorbitol dehydrogenas 46.7 22 0.00056 16.1 8.0 38 1-45 7-44 (256)
286 PRK12828 short chain dehydroge 46.5 22 0.00056 16.1 7.8 36 1-43 9-44 (239)
287 PRK07774 short chain dehydroge 46.3 22 0.00057 16.1 5.3 34 1-41 8-41 (250)
288 PRK02705 murD UDP-N-acetylmura 46.2 22 0.00057 16.1 4.7 32 1-40 2-33 (459)
289 PRK06113 7-alpha-hydroxysteroi 46.1 22 0.00057 16.1 8.0 48 1-55 13-64 (255)
290 PRK06200 2,3-dihydroxy-2,3-dih 45.8 23 0.00058 16.1 5.8 41 1-48 8-48 (263)
291 cd06296 PBP1_CatR_like Ligand- 45.7 23 0.00058 16.0 8.8 77 1-82 2-84 (270)
292 PRK01215 competence damage-ind 45.5 23 0.00058 16.0 5.8 63 19-83 25-96 (264)
293 PRK03359 putative electron tra 45.4 23 0.00058 16.0 6.7 39 42-80 104-143 (256)
294 PRK08862 short chain dehydroge 45.1 23 0.00059 16.0 5.3 34 1-41 7-40 (227)
295 PRK07208 hypothetical protein; 45.0 23 0.00059 16.0 3.3 31 1-40 6-36 (474)
296 COG2873 MET17 O-acetylhomoseri 44.7 24 0.0006 15.9 5.9 117 18-136 114-245 (426)
297 PRK12429 3-hydroxybutyrate deh 44.6 24 0.0006 15.9 5.3 35 1-42 6-40 (258)
298 PRK08339 short chain dehydroge 44.6 24 0.0006 15.9 5.1 35 1-42 10-44 (263)
299 PRK07041 short chain dehydroge 44.6 24 0.0006 15.9 7.7 34 1-41 9-42 (240)
300 PRK09444 pntB pyridine nucleot 44.6 11 0.00027 18.2 1.2 18 87-104 256-273 (459)
301 PRK08277 D-mannonate oxidoredu 44.6 24 0.0006 15.9 5.3 35 1-42 12-46 (278)
302 PRK13525 glutamine amidotransf 44.4 21 0.00055 16.2 2.7 48 19-76 13-60 (191)
303 PRK12939 short chain dehydroge 44.2 24 0.00061 15.9 7.8 34 1-41 9-42 (250)
304 PRK06720 hypothetical protein; 43.8 24 0.00062 15.9 5.2 49 1-56 18-70 (169)
305 KOG1200 consensus 43.8 24 0.00062 15.9 6.2 40 1-47 16-55 (256)
306 PRK07814 short chain dehydroge 43.8 24 0.00062 15.9 7.7 35 1-42 12-46 (263)
307 TIGR00455 apsK adenylylsulfate 43.7 24 0.00062 15.8 3.2 22 19-40 36-57 (187)
308 cd01416 SAICAR_synt_Ade5 Ade5_ 43.7 24 0.00062 15.8 4.4 46 219-264 151-204 (252)
309 TIGR01043 ATP_syn_A_arch ATP s 43.6 24 0.00062 15.8 3.5 80 52-131 217-327 (584)
310 TIGR02853 spore_dpaA dipicolin 43.5 25 0.00063 15.8 4.4 31 1-40 4-35 (288)
311 PRK12827 short chain dehydroge 43.3 25 0.00063 15.8 7.8 33 1-40 8-40 (251)
312 smart00448 REC cheY-homologous 43.3 25 0.00063 15.8 4.3 38 19-56 13-50 (55)
313 PRK08226 short chain dehydroge 43.3 25 0.00063 15.8 5.5 38 1-45 8-45 (263)
314 COG0014 ProA Gamma-glutamyl ph 43.2 25 0.00063 15.8 3.4 82 2-93 143-234 (417)
315 PRK08217 fabG 3-ketoacyl-(acyl 42.9 25 0.00064 15.8 5.2 34 1-41 7-40 (253)
316 PRK12823 benD 1,6-dihydroxycyc 42.8 25 0.00064 15.8 5.5 35 1-42 10-44 (260)
317 CHL00101 trpG anthranilate syn 42.5 25 0.00065 15.7 6.4 43 19-63 12-54 (190)
318 TIGR02005 PTS-IIBC-alpha PTS s 42.5 11 0.00028 18.0 1.0 57 165-242 408-470 (533)
319 PRK06057 short chain dehydroge 42.5 25 0.00065 15.7 5.4 40 1-47 9-48 (255)
320 TIGR01969 minD_arch cell divis 42.1 26 0.00066 15.7 5.1 59 82-142 139-210 (258)
321 TIGR01081 mpl UDP-N-acetylmura 42.1 26 0.00066 15.7 4.3 34 23-56 16-67 (459)
322 PRK07984 enoyl-(acyl carrier p 42.0 26 0.00066 15.7 5.1 67 1-75 8-78 (262)
323 pfam04174 DUF407 Domain of unk 41.8 18 0.00045 16.8 1.9 87 97-187 3-93 (145)
324 pfam01520 Amidase_3 N-acetylmu 41.7 26 0.00067 15.6 4.6 52 10-62 21-78 (172)
325 cd00156 REC Signal receiver do 41.5 26 0.00067 15.6 4.8 41 18-58 9-49 (113)
326 pfam01210 NAD_Gly3P_dh_N NAD-d 41.5 26 0.00067 15.6 5.2 41 1-50 3-43 (159)
327 PRK08219 short chain dehydroge 41.2 27 0.00068 15.6 6.8 31 1-39 5-35 (226)
328 PRK07097 gluconate 5-dehydroge 41.2 27 0.00068 15.6 7.8 35 1-42 12-46 (265)
329 PRK03369 murD UDP-N-acetylmura 40.7 27 0.00069 15.5 6.0 29 17-45 22-50 (487)
330 TIGR01032 rplT_bact ribosomal 40.6 27 0.00069 15.6 2.7 26 257-294 60-85 (114)
331 PRK02645 ppnK inorganic polyph 40.5 27 0.00069 15.5 6.4 76 1-84 6-89 (304)
332 CHL00194 ycf39 Ycf39; Provisio 40.1 28 0.0007 15.5 7.6 103 3-115 4-144 (319)
333 cd01714 ETF_beta The electron 40.1 28 0.00071 15.5 7.6 41 42-82 100-141 (202)
334 PRK05867 short chain dehydroge 40.1 28 0.00071 15.5 5.3 37 1-44 11-47 (253)
335 TIGR02764 spore_ybaN_pdaB poly 40.0 28 0.00071 15.5 4.8 10 101-110 29-38 (198)
336 PRK07478 short chain dehydroge 39.9 28 0.00071 15.5 7.8 35 1-42 8-42 (254)
337 COG1832 Predicted CoA-binding 39.8 28 0.00071 15.5 5.1 29 18-46 31-59 (140)
338 PRK08945 short chain dehydroge 39.8 28 0.00071 15.5 5.2 35 1-42 15-49 (245)
339 PRK00711 D-amino acid dehydrog 39.7 28 0.00072 15.5 3.8 30 1-39 3-32 (416)
340 PRK12829 short chain dehydroge 39.7 28 0.00072 15.5 6.1 40 1-47 13-52 (264)
341 PRK10675 UDP-galactose-4-epime 39.4 28 0.00072 15.4 6.4 29 2-37 3-31 (338)
342 TIGR02188 Ac_CoA_lig_AcsA acet 39.4 17 0.00044 16.8 1.6 11 2-12 148-158 (643)
343 TIGR01133 murG undecaprenyldip 39.4 13 0.00034 17.5 1.1 33 3-39 9-43 (368)
344 TIGR01968 minD_bact septum sit 39.3 29 0.00073 15.4 3.7 30 18-47 18-50 (272)
345 pfam03190 DUF255 Protein of un 39.3 24 0.00062 15.8 2.4 46 213-260 72-118 (163)
346 TIGR03467 HpnE squalene-associ 39.1 29 0.00073 15.4 4.2 34 1-43 1-34 (430)
347 COG2433 Uncharacterized conser 39.0 29 0.00073 15.4 8.9 146 1-154 23-213 (652)
348 PRK10923 glnG nitrogen regulat 38.9 29 0.00074 15.4 4.3 38 19-56 16-53 (469)
349 PRK07576 short chain dehydroge 38.8 29 0.00074 15.4 8.0 34 1-41 10-43 (260)
350 TIGR02049 gshA_ferroox glutama 38.7 25 0.00063 15.8 2.3 116 126-244 263-399 (436)
351 PRK10693 response regulator of 38.6 29 0.00074 15.3 4.1 40 18-57 19-58 (337)
352 PRK05866 short chain dehydroge 38.6 29 0.00075 15.3 4.7 38 1-45 42-79 (290)
353 PRK06753 hypothetical protein; 38.5 29 0.00075 15.3 3.2 32 1-41 3-34 (373)
354 TIGR02471 sucr_syn_bact_C sucr 38.2 12 0.00031 17.8 0.7 50 64-113 14-64 (241)
355 PRK07060 short chain dehydroge 38.0 30 0.00076 15.3 5.4 41 1-48 11-51 (245)
356 TIGR02360 pbenz_hydroxyl 4-hyd 38.0 30 0.00076 15.3 3.5 29 1-38 5-33 (393)
357 COG1139 Uncharacterized conser 37.9 29 0.00075 15.3 2.6 125 22-152 119-250 (459)
358 PRK06949 short chain dehydroge 37.8 30 0.00077 15.3 5.3 34 1-41 11-44 (258)
359 PRK12775 putative trifunctiona 37.8 30 0.00077 15.3 7.3 28 1-37 435-462 (993)
360 PRK06500 short chain dehydroge 37.7 30 0.00077 15.3 5.3 36 1-43 8-43 (249)
361 PTZ00137 2-Cys peroxiredoxin; 37.5 30 0.00077 15.2 5.7 37 241-292 119-156 (194)
362 cd06287 PBP1_LacI_like_8 Ligan 37.5 30 0.00077 15.2 6.3 72 5-81 13-84 (269)
363 PRK13405 bchH magnesium chelat 37.4 30 0.00078 15.2 4.6 64 19-82 265-342 (1207)
364 TIGR00959 ffh signal recogniti 37.4 30 0.00078 15.2 3.8 10 283-292 335-344 (439)
365 pfam01494 FAD_binding_3 FAD bi 37.3 31 0.00078 15.2 3.3 32 1-41 4-35 (349)
366 KOG1476 consensus 37.3 23 0.0006 16.0 2.0 34 50-83 115-148 (330)
367 TIGR01754 flav_RNR ribonucleot 37.1 31 0.00079 15.2 3.6 57 19-78 18-85 (145)
368 PRK07649 para-aminobenzoate/an 36.8 31 0.00079 15.2 6.4 38 19-56 12-49 (195)
369 KOG3445 consensus 36.8 21 0.00053 16.3 1.7 48 129-177 27-82 (145)
370 PRK09271 flavodoxin; Provision 36.7 31 0.0008 15.2 6.0 63 1-69 3-68 (160)
371 TIGR00273 TIGR00273 iron-sulfu 36.7 31 0.0008 15.2 6.3 91 24-118 107-200 (450)
372 cd01414 SAICAR_synt_Sc non-met 36.6 31 0.0008 15.1 3.9 45 219-264 160-213 (279)
373 TIGR01963 PHB_DH 3-hydroxybuty 36.5 31 0.0008 15.1 3.2 41 1-48 3-45 (258)
374 PRK08703 short chain dehydroge 36.4 32 0.00081 15.1 5.3 35 1-42 8-42 (239)
375 PRK10507 bifunctional glutathi 36.4 32 0.00081 15.1 5.6 50 243-294 313-371 (619)
376 PRK13508 tagatose-6-phosphate 36.1 32 0.00081 15.1 6.0 18 19-36 39-56 (309)
377 PRK06398 aldose dehydrogenase; 36.0 32 0.00082 15.1 8.4 33 1-40 8-40 (256)
378 PRK12824 acetoacetyl-CoA reduc 35.8 32 0.00082 15.1 8.3 33 1-40 4-36 (245)
379 PRK06172 short chain dehydroge 35.5 33 0.00083 15.0 5.2 48 1-55 9-60 (253)
380 PRK06847 hypothetical protein; 35.4 33 0.00083 15.0 3.2 32 1-41 7-38 (375)
381 TIGR01491 HAD-SF-IB-PSPlk Phos 35.3 21 0.00054 16.2 1.5 66 12-83 79-148 (203)
382 pfam03358 FMN_red NADPH-depend 35.2 33 0.00084 15.0 4.6 39 1-40 3-41 (147)
383 PRK07236 hypothetical protein; 35.1 33 0.00084 15.0 2.9 30 1-39 9-38 (386)
384 pfam01174 SNO SNO glutamine am 35.1 33 0.00084 15.0 2.5 33 19-56 8-40 (188)
385 pfam01973 MAF_flag10 Protein o 34.7 34 0.00086 15.0 4.6 13 229-241 143-155 (169)
386 TIGR01169 rplA_bact ribosomal 34.4 30 0.00075 15.3 2.2 16 243-259 156-171 (227)
387 pfam02737 3HCDH_N 3-hydroxyacy 34.4 34 0.00087 14.9 4.8 36 1-45 2-37 (180)
388 PRK06171 sorbitol-6-phosphate 34.3 34 0.00087 14.9 4.8 33 1-40 11-43 (266)
389 PRK07523 gluconate 5-dehydroge 34.3 34 0.00087 14.9 7.7 37 1-44 11-47 (251)
390 PRK08594 enoyl-(acyl carrier p 34.1 34 0.00088 14.9 5.6 38 1-43 8-45 (256)
391 PRK07776 consensus 33.9 35 0.00088 14.9 5.3 46 1-53 10-56 (252)
392 cd03801 GT1_YqgM_like This fam 33.6 35 0.00089 14.8 6.8 38 1-38 2-39 (374)
393 TIGR01179 galE UDP-glucose 4-e 33.6 35 0.00089 14.8 3.7 38 19-56 12-82 (341)
394 PRK05282 peptidase E; Validate 33.4 35 0.0009 14.8 7.7 77 5-88 39-125 (233)
395 pfam00070 Pyr_redox Pyridine n 33.4 35 0.0009 14.8 5.2 57 1-80 2-58 (82)
396 PRK10955 DNA-binding transcrip 33.4 35 0.0009 14.8 5.0 45 11-58 8-52 (232)
397 COG1091 RfbD dTDP-4-dehydrorha 33.2 36 0.00091 14.8 5.7 48 3-58 4-58 (281)
398 PRK06128 oxidoreductase; Provi 33.1 36 0.00091 14.8 4.9 33 1-40 57-89 (300)
399 PRK06114 short chain dehydroge 33.0 36 0.00091 14.8 4.9 33 1-40 18-50 (262)
400 PRK08251 short chain dehydroge 32.8 36 0.00092 14.8 7.9 34 1-41 4-37 (248)
401 cd00738 HGTP_anticodon HGTP an 32.7 36 0.00092 14.7 6.3 33 16-48 17-49 (94)
402 PRK11361 acetoacetate metaboli 32.6 36 0.00093 14.7 4.3 38 19-56 17-54 (457)
403 TIGR00003 TIGR00003 copper ion 32.5 23 0.00058 16.0 1.3 15 18-32 50-64 (66)
404 PRK08105 flavodoxin; Provision 32.5 36 0.00093 14.7 6.2 37 1-40 4-40 (149)
405 PRK12743 acetoin dehydrogenase 32.4 37 0.00093 14.7 7.9 31 1-38 4-34 (253)
406 PRK05884 short chain dehydroge 32.4 37 0.00093 14.7 5.6 39 2-47 3-41 (223)
407 PRK08163 salicylate hydroxylas 32.3 37 0.00094 14.7 3.3 32 1-41 7-38 (396)
408 cd00861 ProRS_anticodon_short 32.3 37 0.00094 14.7 6.7 33 16-48 17-49 (94)
409 PRK08017 short chain dehydroge 32.2 37 0.00094 14.7 6.5 44 1-51 4-47 (256)
410 PRK08329 threonine synthase; V 32.2 37 0.00094 14.7 4.6 84 19-104 116-203 (348)
411 PRK06924 short chain dehydroge 32.0 37 0.00095 14.7 4.6 33 1-40 3-35 (251)
412 cd02067 B12-binding B12 bindin 31.9 37 0.00095 14.7 4.6 39 18-56 15-56 (119)
413 PRK05786 fabG 3-ketoacyl-(acyl 31.6 38 0.00096 14.6 5.3 38 1-45 7-44 (238)
414 KOG2520 consensus 31.5 19 0.00049 16.5 0.8 23 68-90 471-493 (815)
415 PRK07063 short chain dehydroge 31.2 38 0.00097 14.6 5.4 36 1-43 9-44 (259)
416 cd01575 PBP1_GntR Ligand-bindi 31.2 38 0.00097 14.6 8.8 75 1-80 2-82 (268)
417 PHA01630 putative group 1 glyc 31.2 38 0.00098 14.6 4.3 113 12-133 13-150 (333)
418 PRK10365 transcriptional regul 31.1 38 0.00098 14.6 4.3 38 19-56 18-55 (441)
419 PRK07035 short chain dehydroge 31.1 38 0.00098 14.6 5.3 34 1-41 10-43 (252)
420 COG3947 Response regulator con 30.9 39 0.00099 14.6 3.7 67 17-83 11-81 (361)
421 cd03016 PRX_1cys Peroxiredoxin 30.8 39 0.00099 14.5 5.5 20 245-265 118-137 (203)
422 PRK12825 fabG 3-ketoacyl-(acyl 30.7 39 0.00099 14.5 8.0 32 1-39 9-40 (250)
423 PRK07831 short chain dehydroge 30.6 39 0.001 14.5 7.9 35 1-41 18-52 (261)
424 PRK04148 hypothetical protein; 30.3 40 0.001 14.5 3.5 24 21-44 30-53 (135)
425 PRK06346 consensus 30.3 40 0.001 14.5 5.2 34 1-41 7-40 (251)
426 cd03808 GT1_cap1E_like This fa 30.3 40 0.001 14.5 5.7 22 17-38 14-35 (359)
427 PRK08993 2-deoxy-D-gluconate 3 30.3 40 0.001 14.5 6.5 34 1-41 12-45 (253)
428 PRK07201 short chain dehydroge 30.2 40 0.001 14.5 4.9 42 71-112 306-347 (663)
429 TIGR02356 adenyl_thiF thiazole 30.0 40 0.001 14.5 4.8 41 19-59 33-99 (210)
430 cd03802 GT1_AviGT4_like This f 30.0 40 0.001 14.5 5.5 21 17-37 23-43 (335)
431 COG0300 DltE Short-chain dehyd 29.9 40 0.001 14.4 7.5 32 2-40 9-40 (265)
432 PRK05875 short chain dehydroge 29.8 40 0.001 14.4 5.3 34 1-41 9-42 (277)
433 cd04906 ACT_ThrD-I_1 First of 29.7 41 0.001 14.4 4.0 58 232-289 16-73 (85)
434 cd07046 BMC_PduU-EutS 1,2-prop 29.6 25 0.00064 15.8 1.1 18 167-184 3-21 (110)
435 pfam03129 HGTP_anticodon Antic 29.5 41 0.001 14.4 4.8 32 17-48 15-46 (93)
436 PRK04175 rpl7ae 50S ribosomal 29.5 41 0.001 14.4 4.4 41 42-82 39-80 (123)
437 PRK07707 consensus 29.4 41 0.001 14.4 5.6 31 1-38 4-34 (239)
438 PRK13933 stationary phase surv 29.3 41 0.0011 14.4 4.8 19 21-40 18-36 (253)
439 PRK06724 hypothetical protein; 29.2 41 0.0011 14.4 3.3 25 241-269 77-101 (102)
440 PRK05335 tRNA (uracil-5-)-meth 29.1 41 0.0011 14.4 2.7 88 1-103 6-109 (434)
441 PRK08773 2-octaprenyl-3-methyl 29.1 42 0.0011 14.4 4.2 31 1-40 9-39 (392)
442 PRK08125 bifunctional UDP-gluc 29.1 42 0.0011 14.4 6.1 47 2-56 3-81 (660)
443 pfam10723 RepB-RCR_reg Replica 29.0 42 0.0011 14.3 3.3 28 272-299 54-81 (85)
444 KOG2799 consensus 28.8 42 0.0011 14.3 2.7 65 89-153 23-101 (434)
445 KOG3167 consensus 28.5 20 0.0005 16.4 0.4 14 68-81 94-107 (153)
446 TIGR01722 MMSDH methylmalonate 28.4 37 0.00093 14.7 1.8 61 47-110 188-257 (478)
447 COG4022 Uncharacterized protei 28.4 43 0.0011 14.3 6.0 11 257-267 266-276 (286)
448 cd01139 TroA_f Periplasmic bin 28.4 43 0.0011 14.3 3.1 41 42-82 83-124 (342)
449 CHL00197 carA carbamoyl-phosph 28.3 43 0.0011 14.3 5.5 12 67-78 100-111 (383)
450 TIGR03407 urea_ABC_UrtA urea A 28.3 43 0.0011 14.3 5.8 73 5-81 10-97 (359)
451 pfam01266 DAO FAD dependent ox 28.3 43 0.0011 14.3 4.3 31 1-40 2-32 (309)
452 TIGR02080 O_succ_thio_ly O-suc 27.9 44 0.0011 14.2 4.6 38 19-56 103-143 (383)
453 pfam02670 DXP_reductoisom 1-de 27.9 44 0.0011 14.2 3.4 38 19-56 11-53 (129)
454 PRK09987 dTDP-4-dehydrorhamnos 27.7 44 0.0011 14.2 6.5 48 3-58 4-62 (299)
455 cd01474 vWA_ATR ATR (Anthrax T 27.5 44 0.0011 14.2 6.2 13 286-299 171-183 (185)
456 TIGR01828 pyru_phos_dikin pyru 27.4 29 0.00074 15.4 1.1 61 227-298 670-736 (920)
457 TIGR03235 DNA_S_dndA cysteine 27.2 45 0.0011 14.1 6.2 50 21-70 102-155 (354)
458 PRK06550 fabG 3-ketoacyl-(acyl 27.2 45 0.0011 14.1 4.8 33 1-40 7-39 (237)
459 TIGR01702 CO_DH_cata carbon-mo 27.1 40 0.001 14.5 1.8 16 221-236 380-395 (647)
460 PRK07308 flavodoxin; Validated 27.1 45 0.0011 14.1 6.8 62 1-69 4-65 (147)
461 COG2179 Predicted hydrolase of 26.9 45 0.0012 14.1 3.8 111 23-145 20-152 (175)
462 cd00860 ThrRS_anticodon ThrRS 26.8 46 0.0012 14.1 4.7 33 16-48 14-46 (91)
463 PRK08159 enoyl-(acyl carrier p 26.8 46 0.0012 14.1 5.5 40 1-45 12-51 (272)
464 PRK07533 enoyl-(acyl carrier p 26.8 46 0.0012 14.1 5.5 37 1-42 8-44 (254)
465 cd01971 Nitrogenase_VnfN_like 26.7 46 0.0012 14.1 2.8 17 91-107 173-189 (427)
466 TIGR03659 IsdE heme ABC transp 26.6 46 0.0012 14.1 2.4 68 10-83 35-120 (289)
467 COG1856 Uncharacterized homolo 26.3 46 0.0012 14.1 4.9 19 95-113 140-158 (275)
468 PRK12838 carbamoyl phosphate s 26.3 46 0.0012 14.0 5.6 25 65-90 93-117 (356)
469 PRK12744 short chain dehydroge 26.3 47 0.0012 14.0 5.0 33 1-40 10-42 (257)
470 PRK06484 short chain dehydroge 26.3 47 0.0012 14.0 5.0 33 1-40 7-39 (530)
471 PRK08857 para-aminobenzoate sy 26.1 47 0.0012 14.0 5.9 43 19-63 12-54 (192)
472 COG3375 Uncharacterized conser 26.0 47 0.0012 14.0 3.2 41 221-263 213-253 (266)
473 COG3380 Predicted NAD/FAD-depe 25.9 47 0.0012 14.0 3.6 41 1-50 4-44 (331)
474 COG1148 HdrA Heterodisulfide r 25.9 47 0.0012 14.0 3.9 35 2-45 128-162 (622)
475 TIGR01244 TIGR01244 conserved 25.9 47 0.0012 14.0 2.3 72 39-112 16-95 (136)
476 COG0512 PabA Anthranilate/para 25.7 48 0.0012 14.0 5.7 63 19-81 14-79 (191)
477 PRK06475 salicylate hydroxylas 25.7 48 0.0012 14.0 3.2 31 1-40 5-35 (400)
478 cd00228 eu-GS Eukaryotic Gluta 25.5 27 0.00069 15.5 0.7 10 234-243 419-428 (471)
479 COG0654 UbiH 2-polyprenyl-6-me 25.4 48 0.0012 13.9 2.9 30 1-39 5-34 (387)
480 pfam12062 HSNSD heparan sulfat 25.2 49 0.0012 13.9 4.7 42 91-132 127-168 (487)
481 PRK04192 V-type ATP synthase s 25.1 49 0.0012 13.9 3.7 14 79-92 102-115 (585)
482 TIGR01790 carotene-cycl lycope 25.0 49 0.0012 13.9 3.8 62 1-82 2-75 (419)
483 cd06283 PBP1_RegR_EndR_KdgR_li 24.9 49 0.0013 13.9 8.8 75 1-80 2-82 (267)
484 PRK02948 cysteine desulfurase; 24.8 50 0.0013 13.9 5.8 66 11-80 97-172 (381)
485 pfam00148 Oxidored_nitro Nitro 24.7 50 0.0013 13.9 7.0 63 2-80 275-363 (398)
486 PRK09581 pleD response regulat 24.6 50 0.0013 13.9 4.6 41 15-55 11-51 (457)
487 PRK11259 solA N-methyltryptoph 24.6 50 0.0013 13.9 3.9 28 1-37 6-33 (377)
488 cd03466 Nitrogenase_NifN_2 Nit 24.6 50 0.0013 13.9 6.9 63 2-80 303-394 (429)
489 TIGR02685 pter_reduc_Leis pter 24.6 50 0.0013 13.8 3.4 28 1-35 3-30 (283)
490 cd07085 ALDH_F6_MMSDH Methylma 24.5 41 0.001 14.4 1.5 67 51-121 192-262 (478)
491 cd02072 Glm_B12_BD B12 binding 24.5 50 0.0013 13.8 5.5 44 6-54 8-54 (128)
492 PRK00141 murD UDP-N-acetylmura 24.4 50 0.0013 13.8 6.1 51 1-60 20-70 (476)
493 pfam09274 ParG ParG. Members o 24.3 51 0.0013 13.8 3.4 34 262-295 37-70 (76)
494 pfam03575 Peptidase_S51 Peptid 24.3 51 0.0013 13.8 5.9 69 20-92 3-85 (154)
495 PRK07588 hypothetical protein; 24.2 51 0.0013 13.8 3.1 33 1-42 3-35 (391)
496 PRK08415 enoyl-(acyl carrier p 24.1 51 0.0013 13.8 5.1 43 1-48 7-49 (274)
497 PHA02096 hypothetical protein 24.1 46 0.0012 14.1 1.7 44 125-175 13-56 (103)
498 PRK10867 signal recognition pa 24.1 51 0.0013 13.8 6.3 76 4-81 159-244 (453)
499 TIGR00512 aIF-2BI_fam translat 24.0 51 0.0013 13.8 3.0 57 19-79 170-237 (306)
500 cd06218 DHOD_e_trans FAD/NAD b 23.8 52 0.0013 13.8 7.7 69 1-75 101-174 (246)
No 1
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase; InterPro: IPR005905 D-alanine--D-alanine ligase (6.3.2.4 from EC) is a bacterial enzyme involved in cell-wall biosynthesis. It participates in forming UDP-N-acetylmuramoyl pentapeptide, the peptidoglycan precursor. These enzymes are proteins of 300 to 360 amino acids containing many conserved regions. The N-terminal Gly-rich region could be involved in ATP-binding. This family of enzymes represent chromosomal versions of species not specifically resistant to glycopeptide antibiotics such as vancomycin. The mechanism of glycopeptide antibiotic resistance involves the production of D-alanine-D-lactate (VanA and VanB families) or D-alanine-D-serine (VanC). This model attempts to exclude the VanA/VanB and VanC subfamilies while capturing most other D-Ala-D-Ala ligases above the trusted cut-off. However, changes in small numbers of amino acids, as demonstrated crystallographically, can alter specificity. In chlamydial species, this enzyme is found as a fusion protein with UDP-N-acetylmuramate--alanine ligase. ; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=647.46 Aligned_cols=295 Identities=38% Similarity=0.656 Sum_probs=272.6
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHC--------CCEEEEECCCC-----------------CHHHHHHHCC-----
Q ss_conf 28983678712788999999999999987--------98899961586-----------------5688887539-----
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDA--------GFKVSQIDVDR-----------------SVGLVLAHLK----- 50 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~--------g~~v~~id~~~-----------------~~~~~l~~~~----- 50 (300)
|||||||.|.||||||+||++|.++|++. ||+|+.||+++ ++...+.+.+
T Consensus 2 v~vL~GG~S~EhEiSL~Sa~~v~~aL~~~~~FIF~deg~~v~~~~~~~~g~w~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR01205 2 VAVLFGGKSAEHEISLVSAQAVLKALRSLLEFIFLDEGYDVYPVDIDKQGSWVFSDAKTEALVYKDLLQKLLEQGGPINL 81 (375)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEEEEECCCCCEECCCCCCCCCCCCCHHHHHHHCCCCEEC
T ss_conf 78973687650567589999999986520876653166489998622677330034565552111004677635897401
Q ss_pred -------------------------CCEEEECCCCC-CCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCE
Q ss_conf -------------------------98999925488-4343102356664321002310023320365001000021210
Q gi|254781179|r 51 -------------------------PDLAFNVLHGN-FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 (300)
Q Consensus 51 -------------------------~D~vf~~lhG~-~gEdg~iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~g 104 (300)
+|+|||+|||+ +||||+|||+||.+|||||||++.||++||||.+||+++++.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~vF~~LHG~~~GEDGtiQGlLe~~gIPY~Gsgv~aSA~smDK~~tK~~~~~~G 161 (375)
T TIGR01205 82 SSLAQVSLLGESFLLEAESAEALEEIDVVFPVLHGPPYGEDGTIQGLLELLGIPYTGSGVLASALSMDKLLTKLLLKSLG 161 (375)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 46674100355666664453020479889981218566855528999997078703747899998742899999998757
Q ss_pred EECCCEEEECCCCC---H--------HHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCC--
Q ss_conf 00012132022200---0--------1221058625643247764211432598999998863003668854223335--
Q gi|254781179|r 105 VPVCPSILVNRFTM---D--------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-- 171 (300)
Q Consensus 105 Iptp~~~~~~~~~~---~--------~~~~~~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~~~~~~~~vlVEef-- 171 (300)
||||+|..+++.++ + ....++||+||||++.|||+||++|++++||+.++ ..++.++.+||||+|
T Consensus 162 lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~lg~P~~VKPa~~GSSvG~~~V~~~~eL~~a~--~~Af~~d~~v~vE~~~~ 239 (375)
T TIGR01205 162 LPTPDYAVLRRKERSSEDEAECENVAVLEKLGFPVFVKPAREGSSVGISKVKSEEELEAAL--DEAFKYDERVIVEEFKQ 239 (375)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCHHHHHHHH--HHHHCCCCEEEEEECCC
T ss_conf 9744704675045445613468999999836897899734677757789846778999999--98615596599981114
Q ss_pred -CCCCEEEEEECC-CCCCCEEEECCCCC-----CCCCCCCCCCCCC-CCCCCCCC--CHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf -788457887314-44420022025543-----3331100001122-22458652--11666554444444577534876
Q gi|254781179|r 172 -VDGIELTCGVMG-DASLDVTEIAVPKS-----DFYSYELKYSSLN-STHVLPAK--IPLDIYKEVQRLAFLAHQAIGCR 241 (300)
Q Consensus 172 -I~G~E~~v~Vl~-~~~~~~~ei~~~~~-----~~~dy~~Ky~~~~-~~~~~Pa~--l~~~~~~~i~~~a~~~~~alg~~ 241 (300)
|+|||++|+||+ +..+|.+++..... .||||++||..+. +.+.+||+ |+++..++|+++|+|+|++|+|+
T Consensus 240 ~i~grEl~v~~L~~~~~lp~~~~~~~~~~~g~~~FYDY~~KY~~~~g~~~~~pa~~~L~~~~~~~i~~~a~~ay~~~~~~ 319 (375)
T TIGR01205 240 RIKGRELEVSILGNEEALPIISIVPEIEPDGGSDFYDYEAKYLDGDGTEYVIPAPAGLDEELEEKIKELALKAYKALGCR 319 (375)
T ss_pred CCCCCEEEEEEEECCCCCEEEECCCCCCCCCCCEECCHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 78985268988707974324540675356767600002114277887326515656788899999999999999840887
Q ss_pred CEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 45799999976898399997472658882238999999839998999999999751
Q gi|254781179|r 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 (300)
Q Consensus 242 g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~~ii~~A~ 297 (300)
|++|||||+++.+|++|++||||+||||++||||++|++.|++|++|+.+||+.|.
T Consensus 320 G~~R~DFf~~~~~G~~yLnEiNT~PGmT~~Sl~P~~~~~~G~~f~~Lv~~~~~~A~ 375 (375)
T TIGR01205 320 GLARVDFFLDKETGEIYLNEINTIPGMTAISLFPKAAAAAGLEFEQLVERILELAL 375 (375)
T ss_pred CEEEEEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC
T ss_conf 44899899872888699998768888720126999999718887899999998529
No 2
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=100.00 E-value=0 Score=632.99 Aligned_cols=296 Identities=45% Similarity=0.736 Sum_probs=282.6
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 28983678712788999999999999987988999615865688887539989999254884343102356664321002
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~lhG~~gEdg~iq~~le~~~ipy~ 80 (300)
|+|||||.|+||+|||.||++|.++|++.||+|+.+|++++....+...++|+|||++||.+||||++|++||++|||||
T Consensus 7 I~vl~GG~S~E~eVSl~S~~~v~~aL~~~~y~v~~id~~~~~~~~l~~~~~D~vf~~lHG~~GEDG~iQglLe~~~IPYt 86 (304)
T PRK01372 7 VAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDPAAELKELGFDRVFNALHGRGGEDGTIQGLLELLGIPYT 86 (304)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCC
T ss_conf 89993678712899999999999988375997999828964677875339999999068999856499999998599835
Q ss_pred CCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCH--HHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHC
Q ss_conf 310023320365001000021210000121320222000--122105862564324776421143259899999886300
Q gi|254781179|r 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 (300)
Q Consensus 81 Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~--~~~~~~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~ 158 (300)
||++.+|++||||..+|++++++|||||+|..+++.+.. ..+.++||+||||+++|||+||++|++.+++..++..
T Consensus 87 Gs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~~~~~~~~~~~~l~~P~iVKP~~~GSSiGv~~V~~~~el~~ai~~-- 164 (304)
T PRK01372 87 GSGVLASALAMDKLRTKLVWQAAGLPTAPWVVLTRAEDLLAAIDKLGLPLVVKPAREGSSVGVTKVKEADELPAALEL-- 164 (304)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCHHHHHHHHHH--
T ss_conf 799899877653899999999869998984998653139999876189879976688866653896698899999999--
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 36688542233357884578873144442002202554333311000011222245865211666554444444577534
Q gi|254781179|r 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 (300)
Q Consensus 159 ~~~~~~~vlVEefI~G~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~al 238 (300)
++.+++++|||+||+|+|+||+|+++.++|++|| .++++||||++||..+.+.+++||++++++.++++++|+++|++|
T Consensus 165 a~~~~~~vLvE~~I~GrEitv~Vlg~~~lp~~eI-~~~~~fyDy~aKY~~~~s~~~~Pa~l~~~~~~~i~~~a~~~~~aL 243 (304)
T PRK01372 165 AFKYDDEVLVEKYIKGRELTVAVLGGKALPVIRI-VPPGEFYDYEAKYLAGDTQYLCPAGLPAELEAELQALALRAYKAL 243 (304)
T ss_pred HHHCCCCCEEEEEECCEEEEEEEECCCCCCEEEE-ECCCCCCCHHHCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 8744886254502565699999989977753899-459987577661255774110068999999999999999999984
Q ss_pred CCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 87645799999976898399997472658882238999999839998999999999751179
Q gi|254781179|r 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 (300)
Q Consensus 239 g~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~~ii~~A~~~r 300 (300)
||+|++|||||+|+ +|++||+||||+||||++|+||++|+++|++|.+|+.+||+.|.|+|
T Consensus 244 g~~g~aRvDf~~~~-~g~~~~lEiNt~PGmT~~Sl~P~~a~~~G~s~~~li~~ii~~Al~~r 304 (304)
T PRK01372 244 GCRGWGRVDFMLDE-DGKPYLLEVNTSPGMTSHSLVPMAARAAGISFSELVVWILEDALCDR 304 (304)
T ss_pred CCCCEEEEEEEEEC-CCCEEEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 99736988999907-99789998339999874158999999819999999999999997459
No 3
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=100.00 E-value=0 Score=593.14 Aligned_cols=293 Identities=37% Similarity=0.646 Sum_probs=265.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH---------------------------------
Q ss_conf 28983678712788999999999999987988999615865688887---------------------------------
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA--------------------------------- 47 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~--------------------------------- 47 (300)
|+|||||.|+||+|||.||++|.++|++.||+|..++++++..|...
T Consensus 6 I~Vl~GG~S~EreVSl~Sg~~v~~~L~~~~y~v~~i~i~~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (344)
T PRK01966 6 VALLFGGRSAEHEVSLVSAKNILKALDKDKFEVIPIGIDKDGRWYLIDGSNMELNSDDPLRIEEKKSAELLLALPGFYEG 85 (344)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99995878821899999999999976150885999998379887725641111024542101234443222345532210
Q ss_pred --HCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCHH-----
Q ss_conf --5399899992548843431023566643210023100233203650010000212100001213202220001-----
Q gi|254781179|r 48 --HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----- 120 (300)
Q Consensus 48 --~~~~D~vf~~lhG~~gEdg~iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~~----- 120 (300)
..+.|+|||++||.+||||++|++||++|||||||++.++++||||..+|++++++|||||+|.++++.....
T Consensus 86 ~~~~~~D~vf~alHG~~GEDG~iQglLe~l~IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~~~~~~~~~~~~ 165 (344)
T PRK01966 86 QLIIEVDVVFPVLHGPPGEDGTIQGLLELLNIPYVGCGVLASAVSMDKILTKRLLAAAGIPQAPYVVLTRSRREEAIAEV 165 (344)
T ss_pred CCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHH
T ss_conf 00356789999068999767099999997599936884899998766999999999879998983998166623458999
Q ss_pred HHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCC----CCCEEEECCCC
Q ss_conf 22105862564324776421143259899999886300366885422333578845788731444----42002202554
Q gi|254781179|r 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPK 196 (300)
Q Consensus 121 ~~~~~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~~~~~~~~vlVEefI~G~E~~v~Vl~~~----~~~~~ei~~~~ 196 (300)
...++||+||||+++|||+||++|++.+|+..++.. ++.+++++||||||+|+|+||+|+++. +++++|| .+.
T Consensus 166 ~~~l~~P~iVKP~~~GSSiGvs~v~~~~el~~ai~~--a~~~~~~vlvEefI~GrE~tv~vl~~~~~~~~l~~~Ei-~~~ 242 (344)
T PRK01966 166 EEKLGLPVFVKPANLGSSVGISKVKNEEELEAALDL--AFEYDRKVLVEQGIKGREIECAVLGYNDEPVASVPGEI-VKD 242 (344)
T ss_pred HHHCCCCEEEECCCCCCCCCEEEECCHHHHHHHHHH--HHHCCCCCEEECCCCCEEEEEEEECCCCCEEEECCEEE-CCC
T ss_conf 986189879932899634325996899999999999--98639750575124448999999748994677311587-179
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 333311000011-2222458652116665544444445775348764579999997689839999747265888223899
Q gi|254781179|r 197 SDFYSYELKYSS-LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 (300)
Q Consensus 197 ~~~~dy~~Ky~~-~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p 275 (300)
++||||++||.. +.+.+++||++++++.++++++|+++|++|||+|++|+|||+|. +|++||+||||+||||+.|+||
T Consensus 243 ~~fydy~~KY~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~lg~rg~~RiDf~~d~-~g~~y~lEvNt~PGmT~~Sl~p 321 (344)
T PRK01966 243 NDFYDYEAKYIDDSGATLVIPADLSEELTEQIRELAIKAFKALGCSGLARVDFFLTE-DGEIYLNEINTLPGFTPISMYP 321 (344)
T ss_pred CCCCCHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEC-CCCEEEEEEECCCCCCCCCHHH
T ss_conf 875148881046897169667889999999999999999998199727989899908-9988999820899987547899
Q ss_pred HHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 9999839998999999999751
Q gi|254781179|r 276 EMAAYAGYSFRELLLWMVEDAS 297 (300)
Q Consensus 276 ~~~~~~G~s~~~li~~ii~~A~ 297 (300)
++|+++|+||.+|+..||+.|.
T Consensus 322 ~~a~~~G~s~~~li~~ii~~Al 343 (344)
T PRK01966 322 KLWEASGLSYPELIDRLIELAL 343 (344)
T ss_pred HHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9999809999999999999973
No 4
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=478.48 Aligned_cols=294 Identities=39% Similarity=0.627 Sum_probs=273.6
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH-------CCCCEEEECCCCCCCCCCHHHHHHH
Q ss_conf 289836787127889999999999999879889996158656888875-------3998999925488434310235666
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------LKPDLAFNVLHGNFGEDGLVQAILE 73 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~-------~~~D~vf~~lhG~~gEdg~iq~~le 73 (300)
|+|++||.|.||+||+.|+.++.++|+..++++..++.+++..+.+.+ .++|+|||.+||.+||||++|++||
T Consensus 5 vavl~gG~s~e~eVsl~sa~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvfp~lhG~~gEDg~iqg~le 84 (317)
T COG1181 5 VAVLLGGRSAEREVSLLSAKAVLRALKGFGYDVTPVDITEAGLWMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQGLLE 84 (317)
T ss_pred EEEEECCCCCCEEEEEECHHHHHHHHHCCCCEEEEEECCCCCEEEECCCHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH
T ss_conf 99985775373069996589999987614871588732466327850310122202698778715588888706999999
Q ss_pred HHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCC------HHHHHCCCCEEEEECCCCCCCCEEEECCH
Q ss_conf 432100231002332036500100002121000012132022200------01221058625643247764211432598
Q gi|254781179|r 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 (300)
Q Consensus 74 ~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~------~~~~~~~~P~ivKP~~ggsS~Gv~~v~~~ 147 (300)
.+|+||||+++.+|+++|||..+|++++..|+|++++..+...++ .....++||++|||.+.|||+|++++++.
T Consensus 85 ~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~~~v~~~ 164 (317)
T COG1181 85 LLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPAREGSSVGRSPVNVE 164 (317)
T ss_pred HHCCCEEECCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEEEECCEE
T ss_conf 70998760764453323509999889986786512356753345204788877414688789985873113679988350
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCC----CCCCEEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCHHH
Q ss_conf 9999988630036688542233357884578873144----442002202554333311000011-22224586521166
Q gi|254781179|r 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAKIPLD 222 (300)
Q Consensus 148 ~el~~~~~~~~~~~~~~~vlVEefI~G~E~~v~Vl~~----~~~~~~ei~~~~~~~~dy~~Ky~~-~~~~~~~Pa~l~~~ 222 (300)
.+++.++ ..++.++.++++|+|+.|+|++|+++++ ..+++.+|..++..||||++||.+ +.+++.+|++++++
T Consensus 165 ~d~~~~~--e~a~~~d~~vl~e~~~~~rei~v~vl~~~~~~~~l~~~eI~~~~~~fydye~Ky~~~gg~~~~~pa~lt~~ 242 (317)
T COG1181 165 GDLQSAL--ELAFKYDRDVLREQGITGREIEVGVLGNDYEEQALPLGEIPPKGEEFYDYEAKYLSTGGAQYDIPAGLTDE 242 (317)
T ss_pred CCHHHHH--HHHHHHCCCCEECCCCCCCEEEEEECCCCCCCEECCCCEEECCCCEEEEEECCCCCCCCCEEECCCCCCHH
T ss_conf 4369999--99998478512003776655898635886552444761681699869860001457898435378899988
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 65544444445775348764579999997689839999747265888223899999983999899999999975
Q gi|254781179|r 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 (300)
Q Consensus 223 ~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~~ii~~A 296 (300)
++++++++|++++++|||+|++|+||++++.+|++|++||||+||||++|+||++|++.|++|.+|+..+++.|
T Consensus 243 ~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~sl~P~~~~~~gi~~~~L~~~~~e~a 316 (317)
T COG1181 243 IHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAMSLFPKAAAAAGISFAILVLRFVELA 316 (317)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 99999999999998608887588879998789989999870899876535376779875998899999998602
No 5
>pfam07478 Dala_Dala_lig_C D-ala D-ala ligase C-terminus. This family represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Probab=100.00 E-value=0 Score=330.65 Aligned_cols=192 Identities=31% Similarity=0.626 Sum_probs=172.6
Q ss_pred CCCCCEEECCCEEEECCCCC------HHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 02121000012132022200------012210586256432477642114325989999988630036688542233357
Q gi|254781179|r 99 VVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 (300)
Q Consensus 99 ~l~~~gIptp~~~~~~~~~~------~~~~~~~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~~~~~~~~vlVEefI 172 (300)
+|+++|||||+|.++++.+. .....++||+||||+++|||+||++|++.+++..++... +.+++++||||||
T Consensus 1 ll~~~Giptp~~~~v~~~~~~~~~~~~i~~~lg~P~vvKP~~~gss~Gv~~v~~~~el~~~i~~~--~~~~~~vlVEefi 78 (201)
T pfam07478 1 LLKAAGIPVAPFIVLTREDWVLATIEKVEEKLGYPVFVKPANLGSSVGISKVTSREELQSAIEEA--FQYDNKVLIEEAI 78 (201)
T ss_pred CHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHH--HHCCCCEEEEECC
T ss_conf 95565999999089825323435799999865998899989999866879995846879999998--7459807999856
Q ss_pred CCCEEEEEECCCC---CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 8845788731444---4200220255433331100001122224586521166655444444457753487645799999
Q gi|254781179|r 173 DGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 (300)
Q Consensus 173 ~G~E~~v~Vl~~~---~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~ 249 (300)
+|+|++|+|++++ .++++++ .++++||||++||..+.+...+|+++++++.++++++|++++++|||+|++|||||
T Consensus 79 ~G~E~~v~vl~~~~~~~~~~~e~-~~~~~~~~~~~k~~~~~~~~~~Pa~l~~~~~~~i~~~A~~~~~aLg~~g~~rvD~~ 157 (201)
T pfam07478 79 EGREIECAVLGNEDLEVSPVGEI-RLSGGFYDYEAKYILSSAQIIVPADLPEEVEEQIQELALKAYKALGCRGLARIDFF 157 (201)
T ss_pred CCCEEEEEEEECCCEEEEEEEEE-ECCCCEEEHHHEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 69679999970898089875899-43775026768013687237615668599999999999999998488760579999
Q ss_pred EECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 976898399997472658882238999999839998999999999
Q gi|254781179|r 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 (300)
Q Consensus 250 ~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~~ii~ 294 (300)
+|. +|++||+||||+||||++|+||++|+++|+||.+|+..||+
T Consensus 158 ~d~-~g~~~vlEvN~~Pg~~~~s~~~~~a~~~G~sy~~l~~~iv~ 201 (201)
T pfam07478 158 LTE-DGEIYLNEVNTMPGFTSISLYPRMWAAAGLSYPDLIDQLIE 201 (201)
T ss_pred ECC-CCCEEEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 968-99499999549799986769999999819999999999859
No 6
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=100.00 E-value=7e-39 Score=269.37 Aligned_cols=270 Identities=21% Similarity=0.311 Sum_probs=222.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC---------------------CCHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf 787127889999999999999879889996158---------------------65688887539989999254884343
Q gi|254781179|r 7 GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFGED 65 (300)
Q Consensus 7 G~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~---------------------~~~~~~l~~~~~D~vf~~lhG~~gEd 65 (300)
|.-+|=| -||.|.|+||++.||+|++|.++ +....+++++|||.+++.+.|+.+-|
T Consensus 20 GQAaEFD---YSGsQAcKALkEEGy~viLVNsNpATimTD~~~AD~vY~ePlT~e~V~~IIEKERPDgiL~t~GGQTALN 96 (1089)
T TIGR01369 20 GQAAEFD---YSGSQACKALKEEGYEVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKERPDGILPTLGGQTALN 96 (1089)
T ss_pred HHHCCCH---HHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHCCCCCHHHHH
T ss_conf 1202302---4789999998764957999758847233886686600252545888866653168660002576035777
Q ss_pred CHH----HHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCC--HHHHHCCCCEEEEECC--CCC
Q ss_conf 102----35666432100231002332036500100002121000012132022200--0122105862564324--776
Q gi|254781179|r 66 GLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLK--GGS 137 (300)
Q Consensus 66 g~i----q~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~--~~~~~~~~P~ivKP~~--ggs 137 (300)
-.+ +|.|+.+||...|.++.|...+.|+.+|+..|++.|+|||++..+++.+. +.++.+|||+||.|+. ||.
T Consensus 97 lav~L~~~GVL~kYgV~vLGT~~eaI~kaEDRe~F~~~M~ei~~pvp~S~~~~~~eEA~~~a~~~GyPviVRpAftLGG~ 176 (1089)
T TIGR01369 97 LAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPKSEIVHSVEEALKAAKEIGYPVIVRPAFTLGGT 176 (1089)
T ss_pred HHHHHHHCCCCHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCHHCCCC
T ss_conf 78866206851452917852342435202027999999997389988110027889999999626896898100323889
Q ss_pred CCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CEEEEEECCCCCCCEEEE-----CCCCCCCCCCCCCCCCCCC
Q ss_conf 4211432598999998863003668854223335788-457887314444200220-----2554333311000011222
Q gi|254781179|r 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEI-----AVPKSDFYSYELKYSSLNS 211 (300)
Q Consensus 138 S~Gv~~v~~~~el~~~~~~~~~~~~~~~vlVEefI~G-~E~~v~Vl~~~~~~~~ei-----~~~~~~~~dy~~Ky~~~~~ 211 (300)
|=.++.|.+||....+.....++-+++||||.|.| +||+--|+.|..-..+-| .-|-+ + |+|+|
T Consensus 177 --GgGiA~n~eEL~~~~~~aL~~SpI~qvL~EkSl~GWKE~EYEVmRD~~dNCItVCNmEN~DPmG-V-------HTGdS 246 (1089)
T TIGR01369 177 --GGGIASNEEELKEIVERALSASPINQVLVEKSLAGWKEIEYEVMRDSKDNCITVCNMENFDPMG-V-------HTGDS 246 (1089)
T ss_pred --CCCEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEEEECCCCEEEEECCCCCCCCC-E-------EECCC
T ss_conf --9852257789999999886308885575011003317889889862687889997454768984-5-------70783
Q ss_pred CCCCCCC-CHHHHHHHHHHHHHHHHHHCCCCCE-EEEEEEEECCCCEEEEEEECCCCCCCHHHHH---------HHHHH-
Q ss_conf 2458652-1166655444444457753487645-7999999768983999974726588822389---------99999-
Q gi|254781179|r 212 THVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGI-SRSDFLFDPLSRKVFWLEINVQPGMTPVSIF---------PEMAA- 279 (300)
Q Consensus 212 ~~~~Pa~-l~~~~~~~i~~~a~~~~~alg~~g~-~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~---------p~~~~- 279 (300)
+.+.|++ |+++.++.+|+.|+++.+.||+-|- |+|.|-+||.++++|+|||||+ +++.|-+ +++|+
T Consensus 247 IVVAPSQTLtD~EYQ~LR~~sikIIR~lGi~GgGCNvQFAL~P~s~~Y~vIEvNPR--vSRSSALASKATGYPiAkvAAK 324 (1089)
T TIGR01369 247 IVVAPSQTLTDKEYQMLRDASIKIIRELGIVGGGCNVQFALDPDSGRYYVIEVNPR--VSRSSALASKATGYPIAKVAAK 324 (1089)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHCCCEECCCCEEEEECCCCCCEEEEEECCC--CCHHHHHHHHHHCCHHHHHHHH
T ss_conf 36507636880789999999999998739121674213215078970699986788--2135898766516628999999
Q ss_pred -HCCCCHHHHHHH
Q ss_conf -839998999999
Q gi|254781179|r 280 -YAGYSFRELLLW 291 (300)
Q Consensus 280 -~~G~s~~~li~~ 291 (300)
+.||+..+|-+.
T Consensus 325 LAvGY~LdEl~N~ 337 (1089)
T TIGR01369 325 LAVGYGLDELKNP 337 (1089)
T ss_pred HHCCCCCCCCCCC
T ss_conf 8468878765688
No 7
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=9.6e-34 Score=236.45 Aligned_cols=270 Identities=21% Similarity=0.274 Sum_probs=215.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC---------------------CCHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf 787127889999999999999879889996158---------------------65688887539989999254884343
Q gi|254781179|r 7 GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFGED 65 (300)
Q Consensus 7 G~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~---------------------~~~~~~l~~~~~D~vf~~lhG~~gEd 65 (300)
|.-.|.| .|+.+.++||++.|++|++++.+ +.+..++++++||.+++.+.|+.+-+
T Consensus 21 Gqa~EfD---ysg~qA~~aLkeeG~~vvlvN~NPaTi~TD~~~ad~vY~ePlt~e~v~~Ii~~E~Pd~il~~~GGqtaLn 97 (1068)
T PRK12815 21 GQAAEFD---YSGTQACKALKEEGYQVVLVNPNPATIMTDPEPADTVYFEPLTLEFVKRIIRREKPDALLATLGGQTALN 97 (1068)
T ss_pred CCHHHHH---HHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCEEEECCCCHHHHH
T ss_conf 2344656---5699999999986998999889832620898744437885898999999999749998986777847999
Q ss_pred CHH----HHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCC--HHHHHCCCCEEEEECCCCCCC
Q ss_conf 102----35666432100231002332036500100002121000012132022200--012210586256432477642
Q gi|254781179|r 66 GLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSL 139 (300)
Q Consensus 66 g~i----q~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~--~~~~~~~~P~ivKP~~ggsS~ 139 (300)
-.+ .|+|+.+||+..|.++.+...+.|+.+++++|++.|+|+|++..+++.+. ...+.+|||++|+|+.-=++.
T Consensus 98 la~~L~~~GiL~k~~v~llGt~~~~I~~aedR~~f~~~m~~ig~~~~~s~~~~s~~ea~~~a~~ig~PvivRps~~lGg~ 177 (1068)
T PRK12815 98 LAVKLLEAGILEQYGVELLGTNVEAIQKGEDRERFRALMKELGEPVPESEIVDSEEEALRFAEKIGFPIIVRPAYTLGGD 177 (1068)
T ss_pred HHHHHHHCCCHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 99999975977865964967999999864599999999997699999705219999999999866998999836106689
Q ss_pred CEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CEEEEEECCCCCCCE-----EEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11432598999998863003668854223335788-457887314444200-----220255433331100001122224
Q gi|254781179|r 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDV-----TEIAVPKSDFYSYELKYSSLNSTH 213 (300)
Q Consensus 140 Gv~~v~~~~el~~~~~~~~~~~~~~~vlVEefI~G-~E~~v~Vl~~~~~~~-----~ei~~~~~~~~dy~~Ky~~~~~~~ 213 (300)
|..+++|.+||...+......+..+++|||+++.| +|+++-|+.|..-.. +|-..|- + -|++++..
T Consensus 178 g~~i~~n~~eL~~~~~~~~~~S~~~~vlie~sl~gwkEie~ev~RD~~~n~i~vc~mEnidP~-G-------IHTGDSi~ 249 (1068)
T PRK12815 178 GGGIAENEEELEQLARQGLQASPIHQCLLEESIAGWKEIEYEVMRDRNDNCVTVCNMENIDPV-G-------VHTGDSIV 249 (1068)
T ss_pred CCEEECCHHHHHHHHHHHHHHCCCCCEEEEHHCCCCEEEEEEEEEECCCCEEEEEECCCCCCC-C-------CCCCCCCE
T ss_conf 650445999999999999963999857865011797699999999889897998541235445-4-------35677453
Q ss_pred CCCCC-CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 58652-1166655444444457753487645799999976898399997472658882238999999839998999999
Q gi|254781179|r 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 (300)
Q Consensus 214 ~~Pa~-l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~~ 291 (300)
+.|+. |+++..+++++.|.++.+.||..|.++|.|-+++.++++|+|||||+ +++.|. .+.++.|+....+...
T Consensus 250 vaP~qTL~d~e~q~lR~~a~~I~~~lgv~G~~NiQFAv~p~~~~~~VIEvNPR--~SRssa--laSKATGyPiAkvaak 324 (1068)
T PRK12815 250 VAPSQTLTDDEYQMLRSASLKIIRALGVVGGCNIQFALDPRSKQYYVIEVNPR--VSRSSA--LASKATGYPIAKIAAK 324 (1068)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCEECCEEEEEEECCCCCCEEEEECCCC--CCCHHH--HHHHHCCCCHHHHHHH
T ss_conf 45781269999999999999999972801010579988699982899964786--220247--8887508848999999
No 8
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=3.9e-33 Score=232.54 Aligned_cols=276 Identities=18% Similarity=0.244 Sum_probs=217.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC---------------------CHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf 7871278899999999999998798899961586---------------------5688887539989999254884343
Q gi|254781179|r 7 GISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNVLHGNFGED 65 (300)
Q Consensus 7 G~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~---------------------~~~~~l~~~~~D~vf~~lhG~~gEd 65 (300)
|.-.|.| .|+.+.++||++.|++|++++.+. .+..+++.++||.+++.+.|+.+-+
T Consensus 21 Gqa~EfD---ysg~qa~~al~e~g~~vilvN~NpaTv~Td~~~ad~vY~ePlt~e~v~~Ii~~E~Pd~il~~~GGQtaLn 97 (1063)
T PRK05294 21 GQACEFD---YSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEKERPDAILPTMGGQTALN 97 (1063)
T ss_pred CCHHHHH---HHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCCEEEECCCCHHHHH
T ss_conf 3723326---5699999999986998999879854410787766437872798999999999759997886677805999
Q ss_pred CHH----HHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCC--HHHHHCCCCEEEEECCCCCCC
Q ss_conf 102----35666432100231002332036500100002121000012132022200--012210586256432477642
Q gi|254781179|r 66 GLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSL 139 (300)
Q Consensus 66 g~i----q~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~--~~~~~~~~P~ivKP~~ggsS~ 139 (300)
-.+ .|+|+.+||...|.++.+...+.|+.+++++|.+.|+|+|++..+++.+. ...+.+|||++|+|+.-=++.
T Consensus 98 la~~L~~~GiL~~~~v~lLGt~~~~I~~aedR~~F~~~l~~i~~p~~~s~~~~s~~ea~~~a~~igyPvivRps~~LGG~ 177 (1063)
T PRK05294 98 LALELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAHTMEEALEVAEEIGYPVIIRPSFTLGGT 177 (1063)
T ss_pred HHHHHHHCCCHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 99999975967764972756999999977789999999997699999725309999999999865998899844216787
Q ss_pred CEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11432598999998863003668854223335788-45788731444420022025543333110000112222458652
Q gi|254781179|r 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218 (300)
Q Consensus 140 Gv~~v~~~~el~~~~~~~~~~~~~~~vlVEefI~G-~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~ 218 (300)
|..+++|.+||...+..........++|||+|+.| +|+++-|+.|..-..+-+..-++ +| ..--|++++..+.|+.
T Consensus 178 g~~i~~n~~eL~~~~~~~~~~S~~~qvLie~sl~gwkEie~ev~rD~~~n~i~v~~mEn--id-p~GIHtGDSi~vaP~q 254 (1063)
T PRK05294 178 GGGIAYNREELEEIVERGLDLSPTTEVLIEESLLGWKEYEMEVMRDKADNCIIVCSIEN--ID-PMGVHTGDSITVAPAQ 254 (1063)
T ss_pred CCEEECCHHHHHHHHHHHHHHCCCCCEEEEHHCCCCEEEEEEEEEECCCCEEEEEEECC--CC-CCCCCCCCCCEECCCC
T ss_conf 64043499999999999996199986896611179889999999818999899954113--54-5645666725356886
Q ss_pred -CHHHHHHHHHHHHHHHHHHCCC-CCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf -1166655444444457753487-6457999999768983999974726588822389999998399989999999
Q gi|254781179|r 219 -IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 (300)
Q Consensus 219 -l~~~~~~~i~~~a~~~~~alg~-~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~~i 292 (300)
|+++..+++++.|.++.++||+ +|.++|.|-+|++++++|+|||||+ +++.|. .+.++.|+....+...|
T Consensus 255 TL~d~e~q~lR~~a~kI~~~L~iv~G~~NiQfA~~p~~~~~~VIEvNPR--~SRssa--laSKaTGyPiA~vaakl 326 (1063)
T PRK05294 255 TLTDKEYQMLRDASIAILREIGVETGGSNVQFAVNPKDGRYVVIEMNPR--VSRSSA--LASKATGYPIAKVAAKL 326 (1063)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEECCCC--CCCCHH--HHHHHHCCCHHHHHHHH
T ss_conf 5898999999999999999829573644799987489984899963775--001068--88887388789999998
No 9
>PRK02186 argininosuccinate lyase; Provisional
Probab=100.00 E-value=6.5e-33 Score=231.12 Aligned_cols=259 Identities=16% Similarity=0.203 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEE------C----------CCCCCC-CCC---HHHHHHHHHHH
Q ss_conf 999999999987988999615865688887539989999------2----------548843-431---02356664321
Q gi|254781179|r 18 SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN------V----------LHGNFG-EDG---LVQAILELLEI 77 (300)
Q Consensus 18 S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~------~----------lhG~~g-Edg---~iq~~le~~~i 77 (300)
||....+.-+++||+++.+-.|..-...+......++-- + +.|-.. -|- ....+.+.+|+
T Consensus 15 TG~l~lk~A~~lG~~pv~LT~dP~rY~~L~~~~~evI~vDT~d~dal~~~v~~~~~IaGV~s~sDyyl~~AA~LA~~LGL 94 (892)
T PRK02186 15 TGELLLRKALLRGFTPYFLTANRGKYPFLDAIRVVTISADTSDPDRIHRFVSSLDGVAGIMSSSEYFIEVASEVARRLGL 94 (892)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHCHHHHHCCCEEEEECCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHCC
T ss_conf 27999999997498558983683435246751765999369999999999742368526987405449999999998198
Q ss_pred HCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCHH--HHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHH
Q ss_conf 0023100233203650010000212100001213202220001--22105862564324776421143259899999886
Q gi|254781179|r 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 (300)
Q Consensus 78 py~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~~--~~~~~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~ 155 (300)
| |+++.+...|.||+++++.|.++|+|+|.|..+...+... ...++|||||||+.+.+|.||.+|++.+|+..+..
T Consensus 95 P--Gp~peAV~~cRdK~~~Rq~L~~aGVp~P~~~lv~~~~e~~~aAa~IGfPvVVKP~dgSGS~GVrLc~s~aEL~e~~~ 172 (892)
T PRK02186 95 P--AANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALDAVALDALDGLTYPVVVKPRMGSGSVGVRLCASVAEAAAHCA 172 (892)
T ss_pred C--CCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEECCCCCCCCCCEEEECCHHHHHHHHH
T ss_conf 9--98999999987199999999966999995688358878999998479998971688887768587689999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCEEEEEECC-CCCCCEEEEC---CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 3003668854223335788457887314-4442002202---55433331100001122224586521166655444444
Q gi|254781179|r 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVTEIA---VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 (300)
Q Consensus 156 ~~~~~~~~~~vlVEefI~G~E~~v~Vl~-~~~~~~~ei~---~~~~~~~dy~~Ky~~~~~~~~~Pa~l~~~~~~~i~~~a 231 (300)
.... .....+|||||++|.||+|-.+. ++...++.|. ......| -+..|..|++++++..++|.+.+
T Consensus 173 ~l~~-~r~~~vLVEEFieGpEYSVEt~s~~G~~~VIGIT~K~l~~~P~F--------VE~GH~fPApL~~~~~~~I~d~v 243 (892)
T PRK02186 173 ALRR-AGTRAALVQAYVEGDEYSVETLTVARGHQVLGITRKHLGPPPHF--------VEIGHDFPAPLSAPQRERIVRTV 243 (892)
T ss_pred HHHH-CCCCCEEEEECCCCCEEEEEEEEECCCEEEEEEEEEECCCCCEE--------EEECCCCCCCCCHHHHHHHHHHH
T ss_conf 9971-54886699971568878999999779679999986533899717--------87067678999858999999999
Q ss_pred HHHHHHCCCC-CEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHH-HCCCCHHHHHHHH
Q ss_conf 4577534876-45799999976898399997472658882238999999-8399989999999
Q gi|254781179|r 232 FLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWM 292 (300)
Q Consensus 232 ~~~~~alg~~-g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~-~~G~s~~~li~~i 292 (300)
.++.+++|++ |.+++||+++. +| +++|||||..+ ..++|++.+ +-|++.-+++..+
T Consensus 244 ~raL~AlGl~~GpAHTEvklT~-~G-PvVIEINPRLA---GGmIP~Lve~A~GvDll~~~~~~ 301 (892)
T PRK02186 244 LRALDAVGYAFGPAHTELRVRG-DT-VVIIEINPRLA---GGMIPVLLEEAFGVDLLDHVIDL 301 (892)
T ss_pred HHHHHHCCCCCCCCEEEEEEEC-CC-EEEEEECCCCC---CCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999970866688328999938-97-38999788544---67658999887184189999998
No 10
>TIGR02712 urea_carbox urea carboxylase; InterPro: IPR014084 Members of this family are ATP-dependent urea carboxylases, including characterised members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae (Baker's yeast). The allophanate hydrolase domain of the yeast enzyme is not included in this entry and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from O. sagaranensis was shown to be highly active on acetamide and formamide as well as urea..
Probab=100.00 E-value=4.2e-33 Score=232.34 Aligned_cols=263 Identities=17% Similarity=0.282 Sum_probs=203.4
Q ss_pred HHHHHHHHHHCCCEEEEECCC--CCHHHHH---------------------------HHCCCCEEEECCCCCCCCCCHHH
Q ss_conf 999999999879889996158--6568888---------------------------75399899992548843431023
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVD--RSVGLVL---------------------------AHLKPDLAFNVLHGNFGEDGLVQ 69 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~--~~~~~~l---------------------------~~~~~D~vf~~lhG~~gEdg~iq 69 (300)
|-+|.+.|+++|...+.|+.+ +.-.+.. ++..-+.|+| =.|...||..+.
T Consensus 13 A~RiirTL~~lgi~sVAvYS~aD~~s~HV~~AD~A~~Lg~~~A~esYL~~dkil~~Ak~tGA~AI~P-GYGFLSENA~FA 91 (1226)
T TIGR02712 13 AVRIIRTLRKLGIRSVAVYSDADRASQHVLDADEAVCLGGATAAESYLDIDKILAIAKKTGAQAIHP-GYGFLSENAAFA 91 (1226)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCCEECCCCCCHHHHHCCHHHHHHHHHHCCCCEEEC-CCCCCCCCHHHH
T ss_conf 9999999877186379863210021578236050260589541322214789999997558938745-887235787799
Q ss_pred HHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCE-EEECCCC--CHHHHHCCCCEEEEECCCCCCCCEEEECC
Q ss_conf 56664321002310023320365001000021210000121-3202220--00122105862564324776421143259
Q gi|254781179|r 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 (300)
Q Consensus 70 ~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~-~~~~~~~--~~~~~~~~~P~ivKP~~ggsS~Gv~~v~~ 146 (300)
..||..||-|+||.++....-==|+.+|++++++|+|-.|. -++.+.+ ...++.||||+|||.+.||+++|+++|++
T Consensus 92 ~~C~~aGI~FvGPtpe~ir~fGLKHtAR~lA~~aGVPL~PGTgLL~sl~eA~~~A~~IGYPVMlKSTAGGGGIGl~~c~~ 171 (1226)
T TIGR02712 92 EACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTGLLESLDEALEAAKEIGYPVMLKSTAGGGGIGLQKCDN 171 (1226)
T ss_pred HHHHHCCCEEECCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 89984795787787066744383256899999668898885155877999999986469954798707876524511189
Q ss_pred HHHHHHHHHHH----CCCCCCCCCCCCCCCC-CCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CH
Q ss_conf 89999988630----0366885422333578-845788731444420022025543333110000112222458652-11
Q gi|254781179|r 147 DQSIPLDLLQS----SSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220 (300)
Q Consensus 147 ~~el~~~~~~~----~~~~~~~~vlVEefI~-G~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~-l~ 220 (300)
.+||.++++.- ..+--|..|.+|+||+ .|.++|-|+||+.-.++-+...+.-. +. ...+..+.+||+ ||
T Consensus 172 ~~eL~~aFe~Vkrlg~~~F~daGVFlErfv~~ARHvEVQifGDG~G~v~aLGeRDCSL---QR--RNQKVvEETPAP~LP 246 (1226)
T TIGR02712 172 AAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEVQIFGDGKGKVVALGERDCSL---QR--RNQKVVEETPAPNLP 246 (1226)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEHHHHHCCCCEEEEEEEECCCCCEEEEECCCCCC---CC--CCCCEEEECCCCCCC
T ss_conf 8999999999899886323635143403203784289987526973369971167544---44--566558727746864
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCC----CCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 6665544444445775348764579999997689839999747265----888223899999983999899999999975
Q gi|254781179|r 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP----GMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 (300)
Q Consensus 221 ~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~P----Glt~~s~~p~~~~~~G~s~~~li~~ii~~A 296 (300)
+++++++.++|+++.+++++++-+.|+|++|+..+++|||||||+= +.|.. -.|+ ||+++||+.|
T Consensus 247 ~~~R~~L~~AA~~Lg~~V~YrSAGTVEFiYD~~~d~FYFLEVNTRLQVEHPvTE~--------VtGl---DLVEWM~r~A 315 (1226)
T TIGR02712 247 EETRAALLAAAEKLGEAVNYRSAGTVEFIYDEARDEFYFLEVNTRLQVEHPVTEM--------VTGL---DLVEWMVRIA 315 (1226)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCEEE--------EECC---HHHHHHHHHH
T ss_conf 8999999999999999718763760477402210871211323411133573017--------8464---0898999971
Q ss_pred HC
Q ss_conf 11
Q gi|254781179|r 297 SC 298 (300)
Q Consensus 297 ~~ 298 (300)
+-
T Consensus 316 Ag 317 (1226)
T TIGR02712 316 AG 317 (1226)
T ss_pred CC
T ss_conf 68
No 11
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=8.6e-33 Score=230.34 Aligned_cols=265 Identities=17% Similarity=0.244 Sum_probs=199.5
Q ss_pred HHHHHHHHHHCCCEEEEECCCCC-----------------------------HHHHHHHCCCCEEEECCCCCCCCCCHHH
Q ss_conf 99999999987988999615865-----------------------------6888875399899992548843431023
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRS-----------------------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQ 69 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~-----------------------------~~~~l~~~~~D~vf~~lhG~~gEdg~iq 69 (300)
|..|..+++++|++++.++.+.+ +.......+.|.|+|- .|...|+..+.
T Consensus 14 A~RiiRa~relGi~tVaVyS~~D~~s~hv~~ADe~~~ig~~~~~~sYLni~~Ii~~A~~~g~dAIhPG-YGFLSEn~~fA 92 (497)
T PRK08654 14 AIRVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIGPAPPSKSYLNMERILEVAKKAGAEAIHPG-YGFLSENPKFA 92 (497)
T ss_pred HHHHHHHHHHCCCEEEEECCHHHHCCCCHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEECC-HHHHHHCHHHH
T ss_conf 99999999985993999888378548997888989984898832121689999999998099999577-76755489999
Q ss_pred HHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEE--EECCCC--CHHHHHCCCCEEEEECCCCCCCCEEEEC
Q ss_conf 566643210023100233203650010000212100001213--202220--0012210586256432477642114325
Q gi|254781179|r 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIK 145 (300)
Q Consensus 70 ~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~--~~~~~~--~~~~~~~~~P~ivKP~~ggsS~Gv~~v~ 145 (300)
..|+..||.|+||++.+....-||..+|+++++.|+|+.|+. .+++.+ ....+.+|||++|||+.||+++|+.+|+
T Consensus 93 ~~~~~~Gi~fIGP~~~~I~~~GDK~~ar~la~~~gVPvvPG~~~~v~~~~ea~~~A~~IGyPV~iKAs~GGGGrGmriV~ 172 (497)
T PRK08654 93 KACEKEGITFIGPSSNVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEVAEEIGYPVIIKASAGGGGIGMRVVY 172 (497)
T ss_pred HHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEE
T ss_conf 99998799999939999998658899999999809986899756679999999999864984587652688888658996
Q ss_pred CHHHHHHHHHHHCCC----CCCCCCCCCCCCCC-CEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-C
Q ss_conf 989999988630036----68854223335788-45788731444420022025543333110000112222458652-1
Q gi|254781179|r 146 KDQSIPLDLLQSSSW----NHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219 (300)
Q Consensus 146 ~~~el~~~~~~~~~~----~~~~~vlVEefI~G-~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~-l 219 (300)
+.+||..++...... --++.++||+||++ |+++|-|++|+.-.++.+...+..+ +.++ ....+..|++ |
T Consensus 173 ~~~eL~~~~~~a~~eA~~~fgd~~v~iEk~i~~~RHIEVQvl~D~~GnvihlgeRdCSi---QRr~--QKvIEeaPap~l 247 (497)
T PRK08654 173 NEEELEEAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQVLADKHGNVIHLGDRECSI---QRRH--QKLIEEAPSPIM 247 (497)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEECCEECCE---EECC--CCEEEECCCCCC
T ss_conf 02568999999999988745998457988415553789999984479786714602343---6268--636997899989
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 1666554444444577534876457999999768983999974726588822389999998399989999999997511
Q gi|254781179|r 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 (300)
Q Consensus 220 ~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~~ii~~A~~ 298 (300)
++++++++.+.|.++++++|++|.+.|+|++| +|++|||||||+= .--..+..+ ..|+ ||+...++-|+.
T Consensus 248 ~~~~r~~m~~~Av~la~~vgY~gaGTVEFl~d--~g~fyFlEmNtRl--QVEHpVTE~--vTGi---DLV~~Qi~iA~G 317 (497)
T PRK08654 248 TPELRERMGEAAVKAAKAINYENAGTVEFLYS--NGNFYFLEMNTRL--QVEHPITEM--VTGI---DIVKEQIKIAAG 317 (497)
T ss_pred CHHHHHHHHHHHHHHHHHHCEECCCEEEEEEE--CCEEEEEEEECCC--CCCCCCCHH--HCCC---CHHHHHHHHHCC
T ss_conf 88999999999999888734302332799874--8839999612442--245542166--6087---199999998679
No 12
>PRK08462 biotin carboxylase; Validated
Probab=100.00 E-value=2.1e-32 Score=227.84 Aligned_cols=266 Identities=20% Similarity=0.321 Sum_probs=197.7
Q ss_pred HHHHHHHHHHCCCEEEEECCCCC-----------------------------HHHHHHHCCCCEEEECCCCCCCCCCHHH
Q ss_conf 99999999987988999615865-----------------------------6888875399899992548843431023
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRS-----------------------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQ 69 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~-----------------------------~~~~l~~~~~D~vf~~lhG~~gEdg~iq 69 (300)
|.+|..+++++|.+++.++.+.+ +.......+.|.|.|=. |...|+-.+.
T Consensus 16 A~Ri~ra~~elgi~tVavys~~D~~a~~v~~ad~~~~ig~~~~~~sYln~~~Ii~~a~~~~~dAihPGy-GfLSEn~~fa 94 (446)
T PRK08462 16 ALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFPGY-GFLSENQNFV 94 (446)
T ss_pred HHHHHHHHHHCCCCEEEEECHHHHCCCHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEECCC-HHHHHCHHHH
T ss_conf 999999999829969999376771676287598989828998433414899999999995919898682-0554087999
Q ss_pred HHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEE--EECCCC--CHHHHHCCCCEEEEECCCCCCCCEEEEC
Q ss_conf 566643210023100233203650010000212100001213--202220--0012210586256432477642114325
Q gi|254781179|r 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIK 145 (300)
Q Consensus 70 ~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~--~~~~~~--~~~~~~~~~P~ivKP~~ggsS~Gv~~v~ 145 (300)
..|+..||.|+||++.+....-||..+|+++.+.|+|+.|+. .+++.+ ....+.+|||++|||+.||+++|+.+|+
T Consensus 95 ~~~~~~Gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPvvpg~~~~v~~~~ea~~~a~~iGyPV~lKas~GGGGrGmriv~ 174 (446)
T PRK08462 95 EICSHHSIKFIGPSVEVMALMSDKSKAKQVMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILKAAAGGGGRGMRVVE 174 (446)
T ss_pred HHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEC
T ss_conf 99997799898959999998409598999999859980678678779999999999972995687632789987428957
Q ss_pred CHHHHHHHHHHH----CCCCCCCCCCCCCCCCC-CEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-C
Q ss_conf 989999988630----03668854223335788-45788731444420022025543333110000112222458652-1
Q gi|254781179|r 146 KDQSIPLDLLQS----SSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219 (300)
Q Consensus 146 ~~~el~~~~~~~----~~~~~~~~vlVEefI~G-~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~-l 219 (300)
+.+|+..++... .+...++++++|+||++ ++++|-|++|+.-.++.+...+..+ +.+ .++..+..|++ |
T Consensus 175 ~~~el~~~~~~a~~ea~~~fg~~~v~vEk~i~~~rHIEvQvl~D~~Gn~ihl~eRdCSi---QRr--~QKviEeaPa~~l 249 (446)
T PRK08462 175 DESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQILGDKHGNVIHVGERDCSM---QRR--HQKLIEESPAVVL 249 (446)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEEECCCCCEEEEECCCCCC---CCC--CCCEEEECCCCCC
T ss_conf 67999999999987788605888669998503550789998852899888853212366---346--7875897899989
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 166655444444457753487645799999976898399997472658882238999999839998999999999751
Q gi|254781179|r 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 (300)
Q Consensus 220 ~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~~ii~~A~ 297 (300)
++++++++.+.|.++++++|++|.+.|+|++|++++++|||||||+=-- -..+..+ ..|+ ||+...++-|.
T Consensus 250 ~~~~r~~m~~~A~~la~~vgY~gaGTvEFl~d~~~~~fyFlE~NtRlQV--EH~VTE~--vtGi---DLV~~Qi~iA~ 320 (446)
T PRK08462 250 DEKTRERLLETAIKAAKAIGYVGAGTFEFLLDSNMKDFYFMEMNTRLQV--EHTVSEM--VSGL---DLIEWMIKIAE 320 (446)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEEECCCCE--ECCCCCC--CCCC---CHHHHHHHHHC
T ss_conf 9899999888999999864836543389998079971899974334210--0111122--1487---79999999867
No 13
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=100.00 E-value=8.2e-32 Score=224.06 Aligned_cols=272 Identities=21% Similarity=0.287 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCC---------------------CHHHHHHHCCCCEEEECCCCCCCCCCHH----HHH
Q ss_conf 999999999998798899961586---------------------5688887539989999254884343102----356
Q gi|254781179|r 17 SSGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNVLHGNFGEDGLV----QAI 71 (300)
Q Consensus 17 ~S~~~i~~aL~~~g~~v~~id~~~---------------------~~~~~l~~~~~D~vf~~lhG~~gEdg~i----q~~ 71 (300)
.||.+.+++|++.||.|++++.+. ....++.+.+||.++|.+.|..+.+-.+ .+.
T Consensus 16 ysG~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP~~~E~v~~Ii~~E~~Dailp~~ggqt~Ln~~~~l~e~g~ 95 (400)
T COG0458 16 YSGTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIEPITKEPVEKIIEKERPDAILPTLGGQTALNAALELKEKGV 95 (400)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 36789999998669759997288721247800053026624737889999975376626324687413468899877264
Q ss_pred HHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCC--CHHHHHCCCCEEEEECCCCCCCCEEEECCHHH
Q ss_conf 6643210023100233203650010000212100001213202220--00122105862564324776421143259899
Q gi|254781179|r 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 (300)
Q Consensus 72 le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~--~~~~~~~~~P~ivKP~~ggsS~Gv~~v~~~~e 149 (300)
|+.+||+.+|+++.+..+|.||+++|++|+++|+|+| +.+.+..+ ......++||+||||+.+-+|.|..+++|.+|
T Consensus 96 l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~~~e~~~~~~~ig~PvIVrP~~~lGG~G~~i~~n~ee 174 (400)
T COG0458 96 LEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHSVEEADEIADEIGYPVIVKPSFGLGGSGGGIAYNEEE 174 (400)
T ss_pred HHHCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECHHH
T ss_conf 5644977994587895564209999999998399988-412356777765576369977980685788875168718999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCC-CEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHH
Q ss_conf 9998863003668854223335788-45788731444420022025543333110000112222458652-116665544
Q gi|254781179|r 150 IPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227 (300)
Q Consensus 150 l~~~~~~~~~~~~~~~vlVEefI~G-~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~-l~~~~~~~i 227 (300)
+...........+-.++|+||+|.| +|++..|+.+..-.++-++.-++ + | -..-+.+++....|++ +++...+.+
T Consensus 175 l~~~~~~~l~~s~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc~men-~-d-p~gvhtgdsi~vapaqtl~d~eyq~~ 251 (400)
T COG0458 175 LEEIIEEGLRASPVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVCNMEN-L-D-PMGVHTGDSITVAPAQTLTDKEYQML 251 (400)
T ss_pred HHHHHHHCCCCCCCCCCEEEEEECCCEEEEEEEEEECCCCEEEEEECCC-C-C-CCCCCCCCEEEECCCCCCCCHHHHHH
T ss_conf 9999873224476420012442168569999999837998799986786-5-6-56644432365214556543788998
Q ss_pred HHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCH-----HHHHHH--HHH--HCCCCHHHHHHHH
Q ss_conf 4444457753487645799999976898399997472658882-----238999--999--8399989999999
Q gi|254781179|r 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-----VSIFPE--MAA--YAGYSFRELLLWM 292 (300)
Q Consensus 228 ~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~-----~s~~p~--~~~--~~G~s~~~li~~i 292 (300)
++++.++.+.+|..|-++++|.+++.++++||+||||+++=+. ...||. .++ +.|+...++.+.+
T Consensus 252 r~~~~~iir~igi~G~~niQ~av~~~~~~~~viEvNpRvSrssaLaskAtgypia~vaakla~g~~l~Ei~n~i 325 (400)
T COG0458 252 RDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPRVSRSSALASKATGYPIAKVAAKLAVGYTLDEIRNDI 325 (400)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCHHHCCCC
T ss_conf 88777788874114787314898699855999995687676403155446876999999750356706544766
No 14
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=100.00 E-value=1.2e-30 Score=216.58 Aligned_cols=248 Identities=18% Similarity=0.237 Sum_probs=177.2
Q ss_pred HHHHHHHHHHCC--CEEEEECCCC------------------------CHHHHHHHCCCCEEEECCCCCCCCCCHH---H
Q ss_conf 999999999879--8899961586------------------------5688887539989999254884343102---3
Q gi|254781179|r 19 GKACASALEDAG--FKVSQIDVDR------------------------SVGLVLAHLKPDLAFNVLHGNFGEDGLV---Q 69 (300)
Q Consensus 19 ~~~i~~aL~~~g--~~v~~id~~~------------------------~~~~~l~~~~~D~vf~~lhG~~gEdg~i---q 69 (300)
+..+.++|++.+ +.|+..|.+. .+.....+.++|+|+|... .|-..+ .
T Consensus 12 ~~~ii~~lk~~~~~~~Vi~~D~~~~a~~~~~aD~~y~~P~~~d~~y~~~ll~i~~~~~id~iiP~~d---~El~~la~~~ 88 (325)
T PRK12767 12 RVQLVKALKKSLLGGKVIGADISPLAPALYFADKFYVVPKVTDPNYIDALLDICKKENIDALIPLID---PELPLLAQHR 88 (325)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCC---HHHHHHHHHH
T ss_conf 8999999997699859999689989953445488998788898789999999999879999997785---0266899999
Q ss_pred HHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCH---HHHHCCCCEEEEECCCCCCCCEEEECC
Q ss_conf 56664321002310023320365001000021210000121320222000---122105862564324776421143259
Q gi|254781179|r 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKK 146 (300)
Q Consensus 70 ~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~---~~~~~~~P~ivKP~~ggsS~Gv~~v~~ 146 (300)
..|+..|+...+|++.+..+|.||+.++++++++|||+|+++...+.+.. ....++||+||||+.|++|+|++++++
T Consensus 89 ~~l~~~gi~v~~~~~e~i~~~~DK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~~~fP~vvKP~~g~gs~Gv~~i~~ 168 (325)
T PRK12767 89 DEFKEIGVKVLVSSKEVIEICNDKWLTYEFLKENGINTPKSYLPEDLEDLLKALAEELGFPLIVKPRDGSGSIGVFKVNN 168 (325)
T ss_pred HHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECC
T ss_conf 99996799895697999998549999999999759998982055899999999986569966985356788775499799
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 89999988630036688542233357884578873144442002202554333311000011222245865211666554
Q gi|254781179|r 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 (300)
Q Consensus 147 ~~el~~~~~~~~~~~~~~~vlVEefI~G~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~l~~~~~~~ 226 (300)
.+|+...+.. ...++|||||+|.||+|.++.+..-.+..... ...+ +...+.+. ++.. .-.++
T Consensus 169 ~~el~~~~~~------~~~~ivqe~i~G~E~tvdv~~d~~g~~~~~~~-~~r~-----~~~~G~~~---~~~~--~~~~~ 231 (325)
T PRK12767 169 REELEFLLRY------NPNLIIQEFIEGQEYTVDVLCDLNGEVISIVP-RKRI-----EVRAGETS---KGVT--VKNPE 231 (325)
T ss_pred HHHHHHHHHH------CCCEEEEECCCCCEEEEEEEEECCCCEEEEEE-EEEC-----CCCCCCCC---CCEE--CCHHH
T ss_conf 9999999974------89749870348988999999978999999999-8733-----64457867---7530--57999
Q ss_pred HHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 4444445775348764579999997689839999747265888223899999983999899999999
Q gi|254781179|r 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 (300)
Q Consensus 227 i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~~ii 293 (300)
+.+++++++++||++|.+.+||+++ +|++|++||||+-| +.+| +...+|+++.+++...+
T Consensus 232 l~~~~~~i~~~l~~~G~~~vq~~~~--~g~~~iiEiNPRf~----g~~~-l~~~aG~n~p~~~~~~~ 291 (325)
T PRK12767 232 LFKLAERIAEKLGARGPLNIQCFVV--DGEPYLFEINPRFG----GGYP-LRAMAGFNEPDILIRNL 291 (325)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEEE--CCEEEEEEEECCCC----CCHH-HHHHHCCCHHHHHHHHH
T ss_conf 9999999999819854599999998--99699999978878----6467-39883989999999998
No 15
>pfam02786 CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold.
Probab=99.98 E-value=7.5e-32 Score=224.32 Aligned_cols=189 Identities=20% Similarity=0.331 Sum_probs=145.7
Q ss_pred CCHHCCCCCCCCEEECCCEEE--ECCCC--CHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHCCCC----CC
Q ss_conf 500100002121000012132--02220--00122105862564324776421143259899999886300366----88
Q gi|254781179|r 92 DKMRSKQVVSSCGVPVCPSIL--VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HG 163 (300)
Q Consensus 92 dK~~~k~~l~~~gIptp~~~~--~~~~~--~~~~~~~~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~~~~----~~ 163 (300)
||..+|++|+++|||||+|.. +++.+ ....+.+|||+||||+++|||+|+.+|++.+|+..++....... .+
T Consensus 1 Dk~~~k~~l~~~GvP~~~~~~~~~~s~ee~~~~a~~iG~PvvvKp~~~g~g~G~~~v~~~~eL~~a~~~a~~~a~~~~~~ 80 (211)
T pfam02786 1 DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNEEELAELFALALAEAPAAFGN 80 (211)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 98999999998698919987888799999999999859978997377789987512412778999999998751431699
Q ss_pred CCCCCCCCCCC-CEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 54223335788-45788731444420022025543333110000112222458652-11666554444444577534876
Q gi|254781179|r 164 DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241 (300)
Q Consensus 164 ~~vlVEefI~G-~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~alg~~ 241 (300)
+++|||+||+| +|++|.+++++...++.+...++ +..+| .+.+....|++ +++++.++++++|.+++++||++
T Consensus 81 ~~vlvEe~i~g~~ei~v~v~~d~~~~~~~~~~~~~----~~~~~-~~~~~~~~Pa~~l~~~~~e~i~~~a~~~~~~lg~~ 155 (211)
T pfam02786 81 PQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNREC----SDQRR-TQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYV 155 (211)
T ss_pred CCEEEEECCCCCEEEEEEEEEECCCCEEEEEEEEE----EEECC-CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEE
T ss_conf 83899740477658999999827998999996332----25033-58444681799999999999999999987526442
Q ss_pred CEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHH
Q ss_conf 457999999768983999974726588822389999998399989999
Q gi|254781179|r 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 (300)
Q Consensus 242 g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li 289 (300)
|+++|||++|..+|++|||||||+++-+ ++ ......|++..+.-
T Consensus 156 G~~~vef~~~~~~~~~~~iEvNpR~~~~--~~--~t~~~tg~~l~~~~ 199 (211)
T pfam02786 156 GAGTVEFALDPFSGEYYFIEMNTRLQVS--HA--LAEKATGYDLAKEA 199 (211)
T ss_pred CCCEEEEEEECCCCEEEEEECCCCCCCH--HH--HHHHHHCCCHHHHH
T ss_conf 3324789996799959999670896834--77--88998794899999
No 16
>PRK05586 biotin carboxylase; Validated
Probab=99.97 E-value=8e-31 Score=217.71 Aligned_cols=266 Identities=16% Similarity=0.266 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCC--H---------------------------HHHHHHCCCCEEEECCCCCCCCCCHH
Q ss_conf 999999999987988999615865--6---------------------------88887539989999254884343102
Q gi|254781179|r 18 SGKACASALEDAGFKVSQIDVDRS--V---------------------------GLVLAHLKPDLAFNVLHGNFGEDGLV 68 (300)
Q Consensus 18 S~~~i~~aL~~~g~~v~~id~~~~--~---------------------------~~~l~~~~~D~vf~~lhG~~gEdg~i 68 (300)
-|..|..+.+++|++++.++.+.+ . .......+.|.|.|= .|...||..+
T Consensus 13 IA~Ri~rt~~~lgi~tVavys~~D~~a~hv~~Ade~~~lg~~~~~~sYln~~~ii~~A~~~g~dAihPG-YGFLSEna~F 91 (447)
T PRK05586 13 IAVRIIRACREMGIETVAVYSEIDKDALHVQLADEAVCIGPASSKDSYLNIYNILSATVLTGAQAIHPG-FGFLSENSKF 91 (447)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHCCEEEECCCCCHHHHHCCHHHHHHHHHHHCCCEEECC-CCHHHCCHHH
T ss_conf 999999999983995999917033678547649899873999956511489999999998499899718-5532238999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEE--ECCCC--CHHHHHCCCCEEEEECCCCCCCCEEEE
Q ss_conf 35666432100231002332036500100002121000012132--02220--001221058625643247764211432
Q gi|254781179|r 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVI 144 (300)
Q Consensus 69 q~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~--~~~~~--~~~~~~~~~P~ivKP~~ggsS~Gv~~v 144 (300)
...++..||.|+||++.+....-||..+|+++.++|+|+.|+.. +.+.+ ......+|||+++||+.||+++|+.+|
T Consensus 92 a~~~~~~Gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPv~pg~~~~v~~~~ea~~~a~~iGyPv~lKAa~GGGGrGmriv 171 (447)
T PRK05586 92 AKMCKECNIVFIGPDSETIELMGNKSNAREIMKKAGVPVVPGSEGEIENEEEALKIAEEIGYPVMVKASAGGGGRGIRIV 171 (447)
T ss_pred HHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCEEEEE
T ss_conf 99999879879895999999853849999999984997656868888999999999986298237630569997736998
Q ss_pred CCHHHHHHHHHHHCCC----CCCCCCCCCCCCCC-CEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 5989999988630036----68854223335788-45788731444420022025543333110000112222458652-
Q gi|254781179|r 145 KKDQSIPLDLLQSSSW----NHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218 (300)
Q Consensus 145 ~~~~el~~~~~~~~~~----~~~~~vlVEefI~G-~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~- 218 (300)
++.+++..++...... --++.++||+||++ |+++|-|++|+.-.++.+...+..+ +.++ .+..+..|++
T Consensus 172 ~~~~el~~~~~~a~~ea~~aFg~~~v~vEk~i~~~RHIEVQvl~D~~Gn~vhlgeRdCSi---QRr~--QKvIEeaPap~ 246 (447)
T PRK05586 172 RSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPRHIEFQILGDNYGNVVHLGERDCSL---QRRN--QKVLEEAPSPV 246 (447)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCC---CCCC--CCEEEECCCCC
T ss_conf 999999999999999999827998468877247871799999970799888840642466---5688--63799889998
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCC-CHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 11666554444444577534876457999999768983999974726588-82238999999839998999999999751
Q gi|254781179|r 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM-TPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 (300)
Q Consensus 219 l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGl-t~~s~~p~~~~~~G~s~~~li~~ii~~A~ 297 (300)
|++++++++.+.|.++.+++|+.|.+.|+|++|+ ++++|||||||+==- ++.+ .+ ..|+ ||+..+|+-|+
T Consensus 247 l~~~~r~~m~~~A~~la~~vgY~gaGTvEFl~d~-~~~fyFlEvNtRlQVEH~VT---E~--vtGv---DLV~~Qi~iA~ 317 (447)
T PRK05586 247 MTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDK-DGNFYFMEMNTRIQVEHPIT---EM--ITGV---DLVKEQIKIAY 317 (447)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC-CCCEEEEEEECCCCCCCCCE---EE--CCCC---CHHHHHHHHHC
T ss_conf 8899999999999988886060333247888758-99789993343555566411---00--0377---68999999867
Q ss_pred C
Q ss_conf 1
Q gi|254781179|r 298 C 298 (300)
Q Consensus 298 ~ 298 (300)
.
T Consensus 318 G 318 (447)
T PRK05586 318 G 318 (447)
T ss_pred C
T ss_conf 9
No 17
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase; InterPro: IPR004549 This family represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase (6.4.1.2 from EC) is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase (6.3.4.14 from EC), and two subunits of carboxyl transferase in a 2:2 complex. In the first step of long-chain fatty acid synthesis, biotin carboxylase catalyses the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coA. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase). In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.; GO: 0016874 ligase activity.
Probab=99.97 E-value=5.8e-31 Score=218.60 Aligned_cols=266 Identities=21% Similarity=0.315 Sum_probs=199.0
Q ss_pred HHHHHHHHHHCCCEEEEEC--CCCCHHHHH-HHCCC----------CEEE------------ECCCCCCC---CCCHHHH
Q ss_conf 9999999998798899961--586568888-75399----------8999------------92548843---4310235
Q gi|254781179|r 19 GKACASALEDAGFKVSQID--VDRSVGLVL-AHLKP----------DLAF------------NVLHGNFG---EDGLVQA 70 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id--~~~~~~~~l-~~~~~----------D~vf------------~~lhG~~g---Edg~iq~ 70 (300)
|-+|..|.+++|..++.|+ .|++..+.+ +.+.. -+.. .++|..|| ||..+..
T Consensus 14 A~RIiRAC~ElGi~TVAVyS~aD~dalHV~LADEavCIGea~S~kSYL~IpnI~aAA~~tG~~AiHPGYGFLSENA~FAe 93 (451)
T TIGR00514 14 ALRIIRACKELGIATVAVYSTADRDALHVLLADEAVCIGEAPSAKSYLNIPNIIAAAEITGADAIHPGYGFLSENADFAE 93 (451)
T ss_pred HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHH
T ss_conf 88999988864986398600441332343430253006862211244115889998877488076288773443124788
Q ss_pred HHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEE---EECCCC--CHHHHHCCCCEEEEECCCCCCCCEEEEC
Q ss_conf 66643210023100233203650010000212100001213---202220--0012210586256432477642114325
Q gi|254781179|r 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIK 145 (300)
Q Consensus 71 ~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~---~~~~~~--~~~~~~~~~P~ivKP~~ggsS~Gv~~v~ 145 (300)
+||..|+.|+||++.+.++-=||..+|+.|+++|+|+.|.- ++.+.+ ...++.+|||+|||.+.||+++||++|+
T Consensus 94 ~c~~~g~~FIGP~pe~Ir~MGDK~~A~~~mKkaGVP~VPGS~GP~~~~~~e~~~~A~~IGyPv~IKA~AGGGGRGmR~vR 173 (451)
T TIGR00514 94 ICEDHGITFIGPSPEAIRLMGDKVTAKETMKKAGVPVVPGSDGPLVEDEEEAVRIAKEIGYPVIIKATAGGGGRGMRVVR 173 (451)
T ss_pred HHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEC
T ss_conf 98738826667871201126886899999974887662388886310278899999747896899962589972258862
Q ss_pred CHHHHHHHHHHHCC----CCCCCCCCCCCCCC-CCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-C
Q ss_conf 98999998863003----66885422333578-845788731444420022025543333110000112222458652-1
Q gi|254781179|r 146 KDQSIPLDLLQSSS----WNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219 (300)
Q Consensus 146 ~~~el~~~~~~~~~----~~~~~~vlVEefI~-G~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~-l 219 (300)
+++||...+....+ --.++.|.+|+||+ -|.+++-||.|..-.++.+...+..+ +.+ ..+..+..|++ |
T Consensus 174 ~~~El~~~~~~a~~EA~AAF~N~~VYiEKfienPRH~E~QVLAD~~GN~vyLgERDCSi---QRR--~QKllEEaPsP~L 248 (451)
T TIGR00514 174 EEDELVKLIKAARAEAAAAFNNDGVYIEKFIENPRHVEIQVLADKYGNVVYLGERDCSI---QRR--NQKLLEEAPSPAL 248 (451)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEECCCCCCH---HCC--CCCEEEECCCCCC
T ss_conf 86899999999999997402879627863336994079998751788878971214620---004--6544654688877
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCE-EEEEEECCCCCC-CH-HHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 1666554444444577534876457999999768983-999974726588-82-23899999983999899999999975
Q gi|254781179|r 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK-VFWLEINVQPGM-TP-VSIFPEMAAYAGYSFRELLLWMVEDA 296 (300)
Q Consensus 220 ~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~-~~~lEvN~~PGl-t~-~s~~p~~~~~~G~s~~~li~~ii~~A 296 (300)
++|+++++-+.|.++++..|++|.+.|+|++|. +++ +||+|+||+==- +| +-++ .|. |||...|+-|
T Consensus 249 t~ElR~~~G~~Av~aA~~iGY~GaGTvEFLld~-~~~rFYFmEMNTRIQVEHPVTEmv------tGv---DL~keQirvA 318 (451)
T TIGR00514 249 TSELREKMGDAAVKAAKSIGYTGAGTVEFLLDK-NGQRFYFMEMNTRIQVEHPVTEMV------TGV---DLIKEQIRVA 318 (451)
T ss_pred CHHHHHHHHHHHHHHHHHCCCEECCEEEEEEEC-CCCEEEEEEECCEEEEEECCEEEE------ECH---HHHHHHHHHH
T ss_conf 889999998999999986498003516888625-887357765176021110320146------002---5788899873
Q ss_pred HCC
Q ss_conf 117
Q gi|254781179|r 297 SCL 299 (300)
Q Consensus 297 ~~~ 299 (300)
...
T Consensus 319 ~G~ 321 (451)
T TIGR00514 319 AGE 321 (451)
T ss_pred CCC
T ss_conf 789
No 18
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=99.97 E-value=6.2e-31 Score=218.45 Aligned_cols=265 Identities=18% Similarity=0.276 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCC-----------------------------HHHHHHHCCCCEEEECCCCCCCCCCHH
Q ss_conf 999999999987988999615865-----------------------------688887539989999254884343102
Q gi|254781179|r 18 SGKACASALEDAGFKVSQIDVDRS-----------------------------VGLVLAHLKPDLAFNVLHGNFGEDGLV 68 (300)
Q Consensus 18 S~~~i~~aL~~~g~~v~~id~~~~-----------------------------~~~~l~~~~~D~vf~~lhG~~gEdg~i 68 (300)
-|..|..+++++|++++.++.+.+ +.......+.|.|.|= .|...|+..+
T Consensus 16 IA~Riirt~relgi~tVavys~~D~~~~hv~~ADeav~ig~~~~~~sYln~~~Ii~~A~~~g~dAiHPG-YGFLSEna~F 94 (458)
T PRK12833 16 IAVRVIRAAHELGMRAVAVVSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAILAAARQCGADAIHPG-YGFLSENAAF 94 (458)
T ss_pred HHHHHHHHHHHCCCCEEEEECHHHCCCHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEECC-CCHHHHCHHH
T ss_conf 999999999983998999918576558358749999982898700132699999999998299999768-6625529999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEE--ECCCC--CHHHHHCCCCEEEEECCCCCCCCEEEE
Q ss_conf 35666432100231002332036500100002121000012132--02220--001221058625643247764211432
Q gi|254781179|r 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVI 144 (300)
Q Consensus 69 q~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~--~~~~~--~~~~~~~~~P~ivKP~~ggsS~Gv~~v 144 (300)
...|+..||-|+||++.+....-||..+|+++.+.|+|+.|+.- +.+.+ ....+.+|||+++||+.||+++|+.+|
T Consensus 95 A~~~~~~gi~fIGPs~~~i~~~GdK~~ar~~a~~~gvPvvpgs~~~v~~~~ea~~~a~~iGyPv~iKAs~GGGGrGmriv 174 (458)
T PRK12833 95 AAQVEAAGLIFVGPDAQVIATMGDKARARETARRAGVPTVPGSDGVVASLDAALEVAARIGYPVMIKAAAGGGGRGIRVA 174 (458)
T ss_pred HHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCEEEE
T ss_conf 99999789989994999999850969999999984999668966766779999999986597542133258998710795
Q ss_pred CCHHHHHHHHHHH----CCCCCCCCCCCCCCCC-CCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 5989999988630----0366885422333578-845788731444420022025543333110000112222458652-
Q gi|254781179|r 145 KKDQSIPLDLLQS----SSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218 (300)
Q Consensus 145 ~~~~el~~~~~~~----~~~~~~~~vlVEefI~-G~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~- 218 (300)
++.+||..++... .+.--++.+++|+||+ .++++|-|++|+. .++.+...+..+ +.+ ..+..+..|++
T Consensus 175 ~~~~el~~~~~~a~~ea~~~Fg~~~v~iEk~i~~~RHIEVQvl~D~~-~~vhl~eRdCSi---QRr--~QKviEeaPsp~ 248 (458)
T PRK12833 175 HDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQILGDGE-NVVHLFERECSL---QRR--RQKILEEAPSPS 248 (458)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEECCC-CEEEEEECCCCC---CCC--CCCEEEECCCCC
T ss_conf 26411489999999999972699764787613675079999985478-769985025656---567--775588779997
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCC-CHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 11666554444444577534876457999999768983999974726588-82238999999839998999999999751
Q gi|254781179|r 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM-TPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 (300)
Q Consensus 219 l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGl-t~~s~~p~~~~~~G~s~~~li~~ii~~A~ 297 (300)
+++++++++.+.|.++.+++|+.|.+.|+|++|+.++++||+||||+==- ++ +..+ ..|+ ||+..+|+-|.
T Consensus 249 l~~~~r~~l~~~a~~la~~v~y~gagTvEFl~d~~~~~fyFlEvNtRlQVEH~---VTE~--vtGi---DLV~~Qi~iA~ 320 (458)
T PRK12833 249 LTPAQRDALCASATRLARAVGYRGAGTLEYLFDDARGEFYFIEMNTRIQVEHP---VTEA--ITGI---DLVREMLRIAD 320 (458)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCC---EEHH--HCCC---CHHHHHHHHHC
T ss_conf 89999999988999998853310000266678658896899962136444442---1223--3188---59999999977
No 19
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=99.97 E-value=1.1e-30 Score=216.85 Aligned_cols=269 Identities=17% Similarity=0.263 Sum_probs=209.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCEEEEECC---------CCCHHHHH------------HHCCCCEEEECCCCCCCCC
Q ss_conf 78712788999999999999987988999615---------86568888------------7539989999254884343
Q gi|254781179|r 7 GISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVL------------AHLKPDLAFNVLHGNFGED 65 (300)
Q Consensus 7 G~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~---------~~~~~~~l------------~~~~~D~vf~~lhG~~gEd 65 (300)
|.|-|=| -++-....+|++.||++++|.. |.+...++ +..+|+-|.-=+.|+.+-+
T Consensus 587 GqgvEFD---Yc~Vh~~~aLr~~Gye~ImiN~NPETVSTDyD~sDrLYFEplt~E~Vm~I~e~E~~~GVIVq~GGQtp~n 663 (1089)
T TIGR01369 587 GQGVEFD---YCCVHAVLALREAGYETIMINYNPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKPEGVIVQFGGQTPLN 663 (1089)
T ss_pred CCCEEEH---HHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCEEHEEECCCCEEEEECCCHHHHH
T ss_conf 6631205---6789999999872995999977899743666651011587635031001100058667999748732678
Q ss_pred CHHHHHHHHHH-HHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCC--HHHHHCCCCEEEEECCCCCCCCEE
Q ss_conf 10235666432-100231002332036500100002121000012132022200--012210586256432477642114
Q gi|254781179|r 66 GLVQAILELLE-IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGII 142 (300)
Q Consensus 66 g~iq~~le~~~-ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~--~~~~~~~~P~ivKP~~ggsS~Gv~ 142 (300)
+..-|+..| +|-.|+++.+..++.|+..|.++|.++|||.|+|..+++.++ ..+..+|||++|.|+.==|+.+|.
T Consensus 664 --lA~~L~~~GG~~iLGTS~~~ID~AEDR~kFs~~l~~Lgi~QP~~~~a~s~eea~~~A~~iGYPvlvRPSYVLgG~aM~ 741 (1089)
T TIGR01369 664 --LAKELEEAGGVPILGTSPESIDRAEDREKFSELLDELGIPQPEWKIATSVEEAKEFASEIGYPVLVRPSYVLGGRAME 741 (1089)
T ss_pred --HHHHHHHCCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHCCCCEEECCCCCCCCCCHH
T ss_conf --999999708931736885787513186799999971587989885272879999998546992898168300336210
Q ss_pred EECCHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCEEEE-EECCCCCCCEEEE--CCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 3259899999886300366885422333578-845788-7314444200220--2554333311000011222245865-
Q gi|254781179|r 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC-GVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPA- 217 (300)
Q Consensus 143 ~v~~~~el~~~~~~~~~~~~~~~vlVEefI~-G~E~~v-~Vl~~~~~~~~ei--~~~~~~~~dy~~Ky~~~~~~~~~Pa- 217 (300)
+|.|+++|...+....+.+..+||||-+||+ |.|+.| +|-+++.+-+.-| ++.+.++ |+|++....|+
T Consensus 742 iv~~~eeL~~yl~~a~~~S~~~PVlidky~e~A~E~dVD~v~Dg~~v~i~gI~EHiE~AGV-------HSGDs~~~~Pp~ 814 (1089)
T TIGR01369 742 IVYNEEELARYLEEAVEVSPEHPVLIDKYLEDAVEIDVDAVSDGEEVLIPGIMEHIEEAGV-------HSGDSTCVLPPQ 814 (1089)
T ss_pred EECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCEEEEEEHHHHHHHCCC-------CCCCHHHCCCCC
T ss_conf 0267889999999999720899769888528888999989972884899623123421367-------613053117697
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC-CEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 2116665544444445775348764579999997689-839999747265888223899999983999899999999
Q gi|254781179|r 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 (300)
Q Consensus 218 ~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~-g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~~ii 293 (300)
.|++++.++|++.+.+++++|+++|+.+|.|.++ + |++|+||+||+- .-.+|-.-++.|+++..+=-.++
T Consensus 815 ~L~~~~~~~i~~~~~~iA~~L~v~Gl~NiQf~~~--~E~~~yVIE~NpRA----SRtVPFvSKa~Gipl~~~A~~~~ 885 (1089)
T TIGR01369 815 TLSEDIVKRIKDIVRKIAKELNVKGLFNIQFVVK--DEGEVYVIEVNPRA----SRTVPFVSKATGIPLAKLAVRVM 885 (1089)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE--CCCCEEEEEECCCC----CCCCCCEEEECCCCHHHHHHHHH
T ss_conf 7788999999999999998706607222455561--69967999971742----06654132103788799999997
No 20
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.97 E-value=1.6e-30 Score=215.82 Aligned_cols=266 Identities=18% Similarity=0.259 Sum_probs=198.1
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCC-----------------------------HHHHHHHCCCCEEEECCCCCCCCCCHH
Q ss_conf 999999999987988999615865-----------------------------688887539989999254884343102
Q gi|254781179|r 18 SGKACASALEDAGFKVSQIDVDRS-----------------------------VGLVLAHLKPDLAFNVLHGNFGEDGLV 68 (300)
Q Consensus 18 S~~~i~~aL~~~g~~v~~id~~~~-----------------------------~~~~l~~~~~D~vf~~lhG~~gEdg~i 68 (300)
-|..|..+++++|++++.++.+.+ +.......+.|.|.|= .|...|+..+
T Consensus 13 IA~RiiRt~~elgi~tVavys~~D~~a~hv~~ADeav~ig~~~~~~sYln~~~Ii~~A~~~g~dAihPG-YGFLSEna~F 91 (449)
T PRK08591 13 IALRILRACKELGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHPG-YGFLSENADF 91 (449)
T ss_pred HHHHHHHHHHHCCCCEEEECCHHHCCCCHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEECC-CCHHHCCHHH
T ss_conf 999999999984994999868575278528859888995898843330489999999998299989727-4243258999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEE--ECCCC--CHHHHHCCCCEEEEECCCCCCCCEEEE
Q ss_conf 35666432100231002332036500100002121000012132--02220--001221058625643247764211432
Q gi|254781179|r 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVI 144 (300)
Q Consensus 69 q~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~--~~~~~--~~~~~~~~~P~ivKP~~ggsS~Gv~~v 144 (300)
...|+..||-|+||++.+....-||..+|+++.++|+|+.|+.- +++.+ ....+.+|||++||++.||+++|+.+|
T Consensus 92 A~~~~~~Gi~fIGP~~~~i~~~GdK~~ar~~a~~agVPvvpgs~~~~~~~~ea~~~a~~iGyPv~iKA~~GGGGrGmrvv 171 (449)
T PRK08591 92 AEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVIIKATAGGGGRGMRVV 171 (449)
T ss_pred HHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEEEEE
T ss_conf 99999879999992999999876989999999983999788876655689999999987499669885268987769998
Q ss_pred CCHHHHHHHHHHHCC----CCCCCCCCCCCCCCC-CEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC-C
Q ss_conf 598999998863003----668854223335788-4578873144442002202554333311000011222245865-2
Q gi|254781179|r 145 KKDQSIPLDLLQSSS----WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-K 218 (300)
Q Consensus 145 ~~~~el~~~~~~~~~----~~~~~~vlVEefI~G-~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa-~ 218 (300)
++.+|+..++..... .--++.+++|+||+. |.++|-|++|+.-.++.+...+..+ +.++ ....+..|+ .
T Consensus 172 ~~~~el~~~~~~~~~Ea~~aFg~~~v~iEk~i~~~RHIEVQilgD~~Gn~vhl~eRdCSi---QRR~--QKvIEEaPap~ 246 (449)
T PRK08591 172 RTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLADGHGNAIHLGERDCSL---QRRH--QKVLEEAPSPA 246 (449)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCEEECCCCCCCH---HHCC--CEEEEECCCCC
T ss_conf 567899999999999999737998567877125653678999863899889874775672---0146--13799779987
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 11666554444444577534876457999999768983999974726588822389999998399989999999997511
Q gi|254781179|r 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 (300)
Q Consensus 219 l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~~ii~~A~~ 298 (300)
+++++++++.+.|.++++++|++|.+.|+|++| ++++||+||||+==- .| .+..+ ..|+ ||+..+|+-|+.
T Consensus 247 l~~~~r~~m~~~A~~la~~v~Y~~aGTvEFL~d--~~~fyFlEmNtRlQV-EH-pVTE~--vtGi---DLV~~Qi~iA~G 317 (449)
T PRK08591 247 ITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYE--NGEFYFIEMNTRIQV-EH-PVTEM--ITGV---DLVKEQIRIAAG 317 (449)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE--CCEEEEEEEECCCCC-CC-CCCHH--HHCC---CHHHHHHHHHCC
T ss_conf 899999999999999999749642103899997--890899962434124-56-52266--5077---199999998679
No 21
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.97 E-value=2.5e-30 Score=214.55 Aligned_cols=265 Identities=16% Similarity=0.261 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCHH-----------------------------HHHHHCCCCEEEECCCCCCCCCCHH
Q ss_conf 99999999998798899961586568-----------------------------8887539989999254884343102
Q gi|254781179|r 18 SGKACASALEDAGFKVSQIDVDRSVG-----------------------------LVLAHLKPDLAFNVLHGNFGEDGLV 68 (300)
Q Consensus 18 S~~~i~~aL~~~g~~v~~id~~~~~~-----------------------------~~l~~~~~D~vf~~lhG~~gEdg~i 68 (300)
-|..|..+.+++|++++.++.+.+-. ..-.....|.|.|= .|...||-.+
T Consensus 13 IA~Ri~rt~~elgi~tvavys~~D~~a~hv~~Ade~v~ig~~~~~~sYln~~~Ii~~A~~~g~dAIHPG-YGFLSEna~F 91 (449)
T PRK06111 13 IAVRIIRTCQKLGIRTVAIYSEADEDALHVKLADEAYLIGGPRVQESYLNLEKIIEIAKKTGAEAIHPG-YGLLSENASF 91 (449)
T ss_pred HHHHHHHHHHHCCCCEEEECCHHHCCCHHHHHCCEEEEECCCCHHHHHCCHHHHHHHHHHHCCCEEECC-CCCCCCCHHH
T ss_conf 999999999984997999917364568358749898880899745433399999999998399999779-8731169899
Q ss_pred HHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEE--CCCC--CHHHHHCCCCEEEEECCCCCCCCEEEE
Q ss_conf 356664321002310023320365001000021210000121320--2220--001221058625643247764211432
Q gi|254781179|r 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFT--MDSQHLISPPYVIKPLKGGSSLGIIVI 144 (300)
Q Consensus 69 q~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~--~~~~--~~~~~~~~~P~ivKP~~ggsS~Gv~~v 144 (300)
...++..|+.|+||++.+....-||..+|+++.+.|+|+.|+..- ++.+ ....+.+|||+++||+.||+++|+.+|
T Consensus 92 A~~~~~~gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPvvPG~~~~~~~~~ea~~~a~~iGyPvliKAa~GGGGrGmriv 171 (449)
T PRK06111 92 AERCKEEGIVFIGPSAEIIAKMGSKIEARRAMQAAGVPVVPGITTALEDAEEAIAIARQIGYPVMLKASAGGGGIGMQLV 171 (449)
T ss_pred HHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEE
T ss_conf 99999889989992999999864869999999983998557867778999999999986598026620358986720895
Q ss_pred CCHHHHHHHHHHH----CCCCCCCCCCCCCCCC-CCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 5989999988630----0366885422333578-845788731444420022025543333110000112222458652-
Q gi|254781179|r 145 KKDQSIPLDLLQS----SSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218 (300)
Q Consensus 145 ~~~~el~~~~~~~----~~~~~~~~vlVEefI~-G~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~- 218 (300)
++.++|..++... ...--++.+++|+||+ +|.++|-|++|+.-.++.+...+..+ +.++ ....+..|++
T Consensus 172 ~~~~el~~~~~~~~~eA~~~Fg~~~v~iEk~i~~~RHIEVQvl~D~~Gn~vhlgeRdCSi---QRr~--QKviEeaPap~ 246 (449)
T PRK06111 172 ETEQELTKAFESNKKRAANFFGNGEMYLEKYIEDARHIEIQLLADTHGNTVYLWERECSV---QRRH--QKVIEEAPSPF 246 (449)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCC---CCCC--CCEEEECCCCC
T ss_conf 799999999999999999863996025544135773379999970688888830512266---3577--41699789999
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCC-CHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 11666554444444577534876457999999768983999974726588-82238999999839998999999999751
Q gi|254781179|r 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM-TPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 (300)
Q Consensus 219 l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGl-t~~s~~p~~~~~~G~s~~~li~~ii~~A~ 297 (300)
+++++++++.+.|.++.+++|++|.+.|+|++|. ++++|||||||+==- ++.+ . ...|+ ||+..+|+-|+
T Consensus 247 l~~~~r~~~~~~A~~la~~v~Y~g~gTvEFl~d~-~~~fyFlEvNtRlQVEHpVT---E--~vtGi---DLV~~Qi~iA~ 317 (449)
T PRK06111 247 LDEETRKAMGEAAVQAAKAIGYTNAGTIEFLVDN-QKNFYFLEMNTRLQVEHPVT---E--EITGI---DLVEQQLRIAA 317 (449)
T ss_pred CCHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEEC-CCCEEEEEEECCCCCCCCEE---E--EECCC---CHHHHHHHHHC
T ss_conf 9999999999999999887171024689999948-98689995343544466404---5--55388---48999999867
No 22
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=99.97 E-value=3.3e-30 Score=213.74 Aligned_cols=265 Identities=16% Similarity=0.285 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHH--------------------H---------HHHCCCCEEEECCCCCCCCCCHH
Q ss_conf 999999999987988999615865688--------------------8---------87539989999254884343102
Q gi|254781179|r 18 SGKACASALEDAGFKVSQIDVDRSVGL--------------------V---------LAHLKPDLAFNVLHGNFGEDGLV 68 (300)
Q Consensus 18 S~~~i~~aL~~~g~~v~~id~~~~~~~--------------------~---------l~~~~~D~vf~~lhG~~gEdg~i 68 (300)
.+..+.++.+++|.+++.++.+.+... + -.....|.+++-. |...||..+
T Consensus 13 ia~ri~ra~~~lGi~tvav~s~~d~~~~~~~~adeav~i~~~~~~~syl~i~~ii~~a~~~gadai~pGy-gflsen~~f 91 (449)
T COG0439 13 IAVRIIRACRELGIETVAVYSEADADALHVALADEAVCIGPAPSADSYLNIDAIIAAAEETGADAIHPGY-GFLSENAAF 91 (449)
T ss_pred HHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEECCCC-HHHHCCHHH
T ss_conf 6899999999849858999661002252566375679838865034565188899899860876672350-342178899
Q ss_pred HHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEE---ECC-CCCHHHHHCCCCEEEEECCCCCCCCEEEE
Q ss_conf 35666432100231002332036500100002121000012132---022-20001221058625643247764211432
Q gi|254781179|r 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNR-FTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 (300)
Q Consensus 69 q~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~---~~~-~~~~~~~~~~~P~ivKP~~ggsS~Gv~~v 144 (300)
+.+++..|+-|+|+++.++..+-||+.+|++|+++|+|++++.. .+. ......+.+|||+||||+.||+|+||++|
T Consensus 92 ae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~iGyPVivKa~~GgGg~G~r~v 171 (449)
T COG0439 92 AEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKAAAGGGGRGMRVV 171 (449)
T ss_pred HHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEE
T ss_conf 99999749751084989999744589999999974999589978776888999999987199789997788996547997
Q ss_pred CCHHHHHHHHHHHCCCCC----CCCCCCCCCCCC-CEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 598999998863003668----854223335788-45788731444420022025543333110000112222458652-
Q gi|254781179|r 145 KKDQSIPLDLLQSSSWNH----GDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218 (300)
Q Consensus 145 ~~~~el~~~~~~~~~~~~----~~~vlVEefI~G-~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~- 218 (300)
++.++|..++........ ++.+++|+||++ +-+.+.|++|+...++++...+..+ +.+ .++..+..|+.
T Consensus 172 ~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rhievqv~gD~~g~~i~l~eRdcsi---qrr--~qkvieeapsp~ 246 (449)
T COG0439 172 RNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLGERDCSI---QRR--HQKVIEEAPSPL 246 (449)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEEECCCCC---CCC--CCCEEEECCCCC
T ss_conf 999999999999998888755897278634105884689999876866589998646687---677--661553058888
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCC-CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 116665544444445775348764579999997689839999747265-8882238999999839998999999999751
Q gi|254781179|r 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP-GMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 (300)
Q Consensus 219 l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~P-Glt~~s~~p~~~~~~G~s~~~li~~ii~~A~ 297 (300)
+++++++++-+.+.++.+++|++|.+.++|++|. ++++||+|+||+= |-++ ..-...|+ ||+..+++-|+
T Consensus 247 ~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~-~~~~yfiEmN~Rlqveh~-----vte~vtGi---Dlv~~qi~ia~ 317 (449)
T COG0439 247 LTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDS-NGEFYFIEMNTRLQVEHP-----VTEMVTGI---DLVKEQIRIAA 317 (449)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC-CCCEEEEEEECCCCCCCC-----CEEEEHHH---HHHHHHHHHHC
T ss_conf 9999999999999999986387777569999827-998799998641136763-----01000004---28999999976
No 23
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys. Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis. ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=99.97 E-value=2e-30 Score=215.23 Aligned_cols=237 Identities=17% Similarity=0.288 Sum_probs=191.0
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHH------------------------------------HHCCCCEEEECCCCCC
Q ss_conf 9999999998798899961586568888------------------------------------7539989999254884
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVL------------------------------------AHLKPDLAFNVLHGNF 62 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l------------------------------------~~~~~D~vf~~lhG~~ 62 (300)
|-+|..|..++|.+++.|+..++-.... ++.+.|. +|..|
T Consensus 11 AIRvFRAa~EL~i~tVAvYs~eD~~~~Hr~KADEaY~vG~g~~lard~~Pv~AYL~I~eiI~vAk~~~vDa----iHPGY 86 (1169)
T TIGR01235 11 AIRVFRAANELGIRTVAVYSEEDKLSLHRQKADEAYLVGEGPQLARDLKPVEAYLSIDEIIRVAKKNKVDA----IHPGY 86 (1169)
T ss_pred CHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCE----EECCC
T ss_conf 02464231013872699965315745574023410011476310102687213047156989960078977----70885
Q ss_pred C---CCCHHHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCC----CHHHHHCCCCEEEEECCC
Q ss_conf 3---431023566643210023100233203650010000212100001213202220----001221058625643247
Q gi|254781179|r 63 G---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKG 135 (300)
Q Consensus 63 g---Edg~iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~----~~~~~~~~~P~ivKP~~g 135 (300)
| |+..+..-++..||-|+||.+.....--||..+|+.+.+.|||+-|.---.-.+ .+.....|||+|+|.++|
T Consensus 87 GfLSE~~~Fa~~v~~aGi~FIGP~a~~~~~~GdKV~AR~~A~~aGvPvvPgt~Gp~~t~eev~~f~~~~GYPvi~KAs~G 166 (1169)
T TIGR01235 87 GFLSENSEFADAVVKAGIVFIGPKAEVLDQLGDKVAARNLAIKAGVPVVPGTDGPVETLEEVLDFAKAIGYPVIIKASYG 166 (1169)
T ss_pred CCCCCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 62248878999998689567379747775405768999888877887636886875259999999975699589872168
Q ss_pred CCCCCEEEECCHHHHHHHHHHH-----CCCCCCCCCCCCCCCC-CCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 7642114325989999988630-----0366885422333578-845788731444420022025543333110000112
Q gi|254781179|r 136 GSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 (300)
Q Consensus 136 gsS~Gv~~v~~~~el~~~~~~~-----~~~~~~~~vlVEefI~-G~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~ 209 (300)
|+++||++|++.+|+++++... .||. ++.+.||+||+ .+.++|-||||..-.++++...+.-+ +.+ ..
T Consensus 167 GGGRGMRvvR~~~dv~~~~~rA~sEA~AAFG-nd~~yvEklie~pkHiEvQ~LGD~~GNVVHLFERDCSV---QRR--hQ 240 (1169)
T TIGR01235 167 GGGRGMRVVRSEEDVADAFQRAKSEAKAAFG-NDEVYVEKLIERPKHIEVQLLGDKHGNVVHLFERDCSV---QRR--HQ 240 (1169)
T ss_pred CCCCCCEEECCHHHHHHHHHHHHHHHHHCCC-CCEEEEEEECCCCCEEEEEEEECCCCCEEEEEECCCCC---EEE--CC
T ss_conf 8972016860756799998887688731048-98069851024882078987634889878887507762---000--55
Q ss_pred CCCCCCCCC-CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCC
Q ss_conf 222458652-11666554444444577534876457999999768983999974726
Q gi|254781179|r 210 NSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 (300)
Q Consensus 210 ~~~~~~Pa~-l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~ 265 (300)
...++.||. ||.+++++|.+.|.|+++..|+++-+.|+|++|..+|++|||||||+
T Consensus 241 KVvE~APA~~Ls~e~Rd~~~~~AvkLAk~~nY~nAGTvEFL~d~~~G~FYFIEvNpR 297 (1169)
T TIGR01235 241 KVVEVAPAPSLSREVRDEIAEYAVKLAKEVNYINAGTVEFLVDNDTGKFYFIEVNPR 297 (1169)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECCC
T ss_conf 078867887788889999999999998742898887248855548893778998880
No 24
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.97 E-value=4.8e-30 Score=212.72 Aligned_cols=266 Identities=16% Similarity=0.246 Sum_probs=195.7
Q ss_pred HHHHHHHHHHCCCEEEEECCCCC--HHHH----------------------------HHHCCCCEEEECCCCCCCCCCHH
Q ss_conf 99999999987988999615865--6888----------------------------87539989999254884343102
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRS--VGLV----------------------------LAHLKPDLAFNVLHGNFGEDGLV 68 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~--~~~~----------------------------l~~~~~D~vf~~lhG~~gEdg~i 68 (300)
|.+|..+.+++|.+++.++.+.+ ..+. -...+.|.|.|= .|...|+..+
T Consensus 17 A~Ri~Ra~~elgi~tVavys~~D~~s~h~~~ADea~~ig~~~~p~~sYL~~~~ii~~A~~~~~dAiHPG-YGFLSEn~~F 95 (1147)
T PRK12999 17 AIRIFRAATELGIRTVAIYSEEDKLSLHRFKADEAYLIGEGKGPIEAYLDIDEIIRVAKQAGVDAIHPG-YGFLSENPEF 95 (1147)
T ss_pred HHHHHHHHHHCCCCEEEEECHHHCCCHHHHHCCEEEEECCCCCHHHHHCCHHHHHHHHHHHCCCEEECC-CCHHHCCHHH
T ss_conf 999999999839958999784645782588588567728999713111299999999999498999779-6220079999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEE--ECCCC--CHHHHHCCCCEEEEECCCCCCCCEEEE
Q ss_conf 35666432100231002332036500100002121000012132--02220--001221058625643247764211432
Q gi|254781179|r 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVI 144 (300)
Q Consensus 69 q~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~--~~~~~--~~~~~~~~~P~ivKP~~ggsS~Gv~~v 144 (300)
...|+..||-|+||++.+....-||..+|+++.++|+|+.++.- +.+.+ ......+|||+++|++.||+++|+.+|
T Consensus 96 a~~~~~~gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPvvpgs~~~~~~~~~~~~~a~~iGyPv~iKA~~GGGGrGmrvv 175 (1147)
T PRK12999 96 ARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGTEGPIDDLEEALEFAEEIGYPLMLKASAGGGGRGMRIV 175 (1147)
T ss_pred HHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEE
T ss_conf 99999878999894999999855999999999983989888989988999999999987199789997778980514895
Q ss_pred CCHHHHHHHHHHHCC----CCCCCCCCCCCCCC-CCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 598999998863003----66885422333578-845788731444420022025543333110000112222458652-
Q gi|254781179|r 145 KKDQSIPLDLLQSSS----WNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218 (300)
Q Consensus 145 ~~~~el~~~~~~~~~----~~~~~~vlVEefI~-G~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~- 218 (300)
++.+++..++..... .--++.+++|+||+ .|.++|.|++|+.-.++.+...+..+ +.++ ....+..|++
T Consensus 176 ~~~~~l~~~~~~a~~EA~~aFG~~~v~~Ek~i~~~rHiEvQilgD~~Gnvvhl~eRdCSi---QRR~--QKviEeaPap~ 250 (1147)
T PRK12999 176 RSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQILGDKHGNVVHLYERDCSV---QRRH--QKVVEIAPAPG 250 (1147)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEECCCCCCH---HHCC--CEEEEECCCCC
T ss_conf 898999999999999999836997568855036786479999962889888714765643---2235--13578668999
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 11666554444444577534876457999999768983999974726588822389999998399989999999997511
Q gi|254781179|r 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 (300)
Q Consensus 219 l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~~ii~~A~~ 298 (300)
|++++++++.+.|.++++++|+++.+.|+|++|. +|++|||||||+=--. | .+..+ -.|+ ||+...|+-|..
T Consensus 251 l~~~~r~~l~~~A~~~a~~v~Y~~aGTvEFL~d~-~~~fyFiE~N~RlQVE-H-~VTE~--vtGi---DlV~~Qi~iA~G 322 (1147)
T PRK12999 251 LSPELREEICEAAVKLARAVGYVNAGTVEFLVDA-DGNFYFIEVNPRIQVE-H-TVTEM--VTGI---DIVQSQILIAEG 322 (1147)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC-CCCEEEEEEECCCCCC-C-CCHHH--EECC---CHHHHHHHHHCC
T ss_conf 9999999999999999997697643227899838-8878999866565645-6-53021--0155---089999998579
No 25
>PRK07178 acetyl-CoA carboxylase; Validated
Probab=99.97 E-value=8e-30 Score=211.30 Aligned_cols=264 Identities=15% Similarity=0.211 Sum_probs=195.4
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCH----------------------------HHHHHHCCCCEEEECCCCCCCCCCHHHH
Q ss_conf 999999999879889996158656----------------------------8888753998999925488434310235
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSV----------------------------GLVLAHLKPDLAFNVLHGNFGEDGLVQA 70 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~----------------------------~~~l~~~~~D~vf~~lhG~~gEdg~iq~ 70 (300)
|..|..+++++|.+++.++.+.+- ...-...+.|.|.|= .|...|+..+..
T Consensus 14 A~RiiRt~~elgi~tVavys~~D~~a~hv~~ADea~~ig~~~~~sYln~~~Ii~~A~~~g~dAiHPG-YGFLSEn~~FA~ 92 (471)
T PRK07178 14 AVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAHSIGADPLAGYLNPRKLVNLAVETGCDALHPG-YGFLSENAELAE 92 (471)
T ss_pred HHHHHHHHHHCCCCEEEEECHHHCCCHHHHHCCEEEECCCCHHHHHCCHHHHHHHHHHHCCCEEECC-CCHHHCCHHHHH
T ss_conf 9999999998399489990837566836884888887188726654499999999999699999778-333115989999
Q ss_pred HHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEE--ECCCC--CHHHHHCCCCEEEEECCCCCCCCEEEECC
Q ss_conf 666432100231002332036500100002121000012132--02220--00122105862564324776421143259
Q gi|254781179|r 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 (300)
Q Consensus 71 ~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~--~~~~~--~~~~~~~~~P~ivKP~~ggsS~Gv~~v~~ 146 (300)
.|+..||.|+||++.+....-||..+|+++.+.|+|+.|+.. +++.+ ....+.+|||+++||+.||+++|+.+|++
T Consensus 93 ~~~~~gi~FIGPs~~~i~~~GdK~~ar~~a~~~gvPv~pgs~~~v~~~eea~~~A~~iGyPV~lKAa~GGGGrGmrvv~~ 172 (471)
T PRK07178 93 ICAERGIKFIGPSADVIRRMGDKTEARRSMIKAGVPVTPGSEGNLADIDEALAEAERIGYPVMLKATSGGGGRGIRRCNS 172 (471)
T ss_pred HHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECC
T ss_conf 99978998999599999987483989999998699826896886566999999998669815863202687664499766
Q ss_pred HHHHHHHHHHHC----CCCCCCCCCCCCCCC-CCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCH
Q ss_conf 899999886300----366885422333578-84578873144442002202554333311000011222245865-211
Q gi|254781179|r 147 DQSIPLDLLQSS----SWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIP 220 (300)
Q Consensus 147 ~~el~~~~~~~~----~~~~~~~vlVEefI~-G~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa-~l~ 220 (300)
.+++..++.... ..--++++++|+||+ .|+++|-|++|+.-.++.+...+..+ +.++ ....+..|+ .|+
T Consensus 173 ~~el~~~~~~~~~EA~~aFg~~~v~lEk~i~~~RHIEVQilgD~~Gnvihl~eRdCSi---QRr~--QKvIEeaPa~~l~ 247 (471)
T PRK07178 173 REELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILADSFGNVVHLFERDCSI---QRRN--QKLIEIAPSPQLT 247 (471)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEEEECCC---CCCC--CCEEEECCCCCCC
T ss_conf 0568899999999999844997368766046762899999980789888884123465---1078--7327876999888
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCC-CHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 666554444444577534876457999999768983999974726588-822389999998399989999999997511
Q gi|254781179|r 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM-TPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 (300)
Q Consensus 221 ~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGl-t~~s~~p~~~~~~G~s~~~li~~ii~~A~~ 298 (300)
+++++++.+.|.++++++|+.|.+.|+|+++ ++++||+||||+==- ++. .. ...|+ ||+..+|+-|+.
T Consensus 248 ~~~r~~l~~~A~~la~~v~Y~gaGTvEFlv~--~~~~yFlEvNtRlQVEH~V---TE--~vtGi---DLV~~Qi~iA~G 316 (471)
T PRK07178 248 PEQRAYIGDLAVRAAKAVGYENAGTVEFLLA--DGEVYFMEMNTRVQVEHTI---TE--EITGI---DIVREQIRIASG 316 (471)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEEEEE--CCCEEEEECCCCCCCCCCH---HH--HHHCC---CHHHHHHHHHCC
T ss_conf 9999999889999999648650126999986--7947998324666555421---36--66167---589999998679
No 26
>pfam08443 RimK RimK-like ATP-grasp domain. This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK.
Probab=99.97 E-value=3.3e-30 Score=213.74 Aligned_cols=181 Identities=20% Similarity=0.301 Sum_probs=141.0
Q ss_pred CCCCHHCCCCCCCCEEECCCEEEECCCCCH--HHHHC-CCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 365001000021210000121320222000--12210-586256432477642114325989999988630036688542
Q gi|254781179|r 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLI-SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 (300)
Q Consensus 90 ~~dK~~~k~~l~~~gIptp~~~~~~~~~~~--~~~~~-~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~~~~~~~~v 166 (300)
+.||..+|++|+++|||||++.++.+.+.. ..+.+ +||+||||++||+|+||+++++.+++...+... ...+.++
T Consensus 1 a~DK~~tk~ll~~~Gip~P~~~~~~~~~~~~~~~~~~~g~PvVvKP~~g~~g~gV~~v~~~~el~~~~~~~--~~~~~~v 78 (190)
T pfam08443 1 ARDKAKSHQLLAKHGIPVPNTGLAWSPEDAEKFIEQIKGFPVVVKSVFGSQGIGVFLAEDEQSLEQLLEAF--KWLKNQI 78 (190)
T ss_pred CCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECHHHHHHHHHHH--HHCCCCE
T ss_conf 97889999999987979799899889999999999808983899678899984558860637777888888--6348737
Q ss_pred CCCCCCC---CCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 2333578---8457887314444200220255433331100001122224586521166655444444457753487645
Q gi|254781179|r 167 LIEQYVD---GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 (300)
Q Consensus 167 lVEefI~---G~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~g~ 243 (300)
|+||||+ |+|++|.|+++..++.+++....+ ||..++..+... .|..+++ +++++|.+++++||+ |+
T Consensus 79 lvqefI~~~~~~dirv~vi~~~~~~~~~~~~~~~---~~~~n~~~g~~~--~~~~l~~----e~~e~a~~a~~algl-~~ 148 (190)
T pfam08443 79 LVQEFIAEAGNRDIRCLVVGGEVVGAIHRQSNEG---DFRTNLHRGGVA--EPYQLSQ----EEEEIAIKAAQAMGL-DV 148 (190)
T ss_pred EEEEEEECCCCCEEEEEEECCCEEEEEEEECCCC---CCCCCCCCCCEE--CCCCCCH----HHHHHHHHHHHHHCC-CE
T ss_conf 7555660478854899996063367899974667---621432468624--5876688----999999999997389-97
Q ss_pred EEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 79999997689839999747265888223899999983999899999
Q gi|254781179|r 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 (300)
Q Consensus 244 ~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~ 290 (300)
++|||+.++ +| +||+|||+.|||+. ..+..|.+..+.|.
T Consensus 149 ~gVD~~~~~-~g-~~vlEvN~~Pg~~~------~~~~~g~~i~~~i~ 187 (190)
T pfam08443 149 LGVDIFRSK-RG-LLVCEVNSSPGLKG------IERTTGINIAIKLI 187 (190)
T ss_pred EEEEEEEEC-CC-EEEEEECCCCCCHH------HHHHHCCCHHHHHH
T ss_conf 999999979-96-79999669846047------89887949999998
No 27
>PRK07206 hypothetical protein; Provisional
Probab=99.97 E-value=1e-28 Score=204.25 Aligned_cols=262 Identities=21% Similarity=0.266 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCC-------------------------CHHHHHHHCCCCEEEECCCCCCCCCCH-H-H
Q ss_conf 999999999998798899961586-------------------------568888753998999925488434310-2-3
Q gi|254781179|r 17 SSGKACASALEDAGFKVSQIDVDR-------------------------SVGLVLAHLKPDLAFNVLHGNFGEDGL-V-Q 69 (300)
Q Consensus 17 ~S~~~i~~aL~~~g~~v~~id~~~-------------------------~~~~~l~~~~~D~vf~~lhG~~gEdg~-i-q 69 (300)
-||..+++++++.||+++.|-.+. +....++..+|+.|++- +|.|. + -
T Consensus 12 StG~~la~a~~~~G~~~v~V~S~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~aVi~g-----~E~gV~lAd 86 (415)
T PRK07206 12 SSGKFLAPAFKKRGIELIAVTSACDLDPLYYAGFDENIYRQQRIIKHIDETIEFLRQLGPDAVIAG-----AESGVELAD 86 (415)
T ss_pred CCHHHHHHHHHHCCCEEEEEEECCCCCHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEC-----CHHHHHHHH
T ss_conf 518799999997398289998379884354423243434332105789999999986297299978-----556599999
Q ss_pred HHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCHH-----HHHCCCCEEEEECCCCCCCCEEEE
Q ss_conf 566643210023100233203650010000212100001213202220001-----221058625643247764211432
Q gi|254781179|r 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVI 144 (300)
Q Consensus 70 ~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~~-----~~~~~~P~ivKP~~ggsS~Gv~~v 144 (300)
.+.+.+|+|| |+++..+....||+.|++.|+++|+|+|++...++.+... ...++||+||||.++.+|.||++|
T Consensus 87 ~La~~LgLp~-~N~~~~~~aRRdK~~m~~~L~~aGl~~~~~~~~~~~~e~~~~~~~~~~~~~PvVvKP~~gagS~gV~~c 165 (415)
T PRK07206 87 RLAERLGLCY-ANAPALSSARRNKYEMINALANAGLPAIRQIDTADWEEASAWIRVNNLWDSPVVIKPLESAGSDGVFFC 165 (415)
T ss_pred HHHHHHCCCC-CCCHHHHHHHCCHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEE
T ss_conf 9999868998-995568877459999999999759985538852999999999986055799989958999987998997
Q ss_pred CCHHHHHHHHHHHCCC-----CCCCCCCCCCCCCCCEEEE-EECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5989999988630036-----6885422333578845788-731444420022025543333110000112222458652
Q gi|254781179|r 145 KKDQSIPLDLLQSSSW-----NHGDQLLIEQYVDGIELTC-GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218 (300)
Q Consensus 145 ~~~~el~~~~~~~~~~-----~~~~~vlVEefI~G~E~~v-~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~ 218 (300)
++.+|+..++...... ..+..+||||||+|.||.| +|..++...++++.......+. ...+ -.+..+.+|.
T Consensus 166 ~~~~el~~a~~~i~~~~n~~g~~~~~vLveEyl~G~EysVe~vs~~G~h~v~~i~~y~k~~~~-~~~~-~~~~~~~~p~- 242 (415)
T PRK07206 166 PDKQDAYHAFNAILGKANKLGLVNESVLVQEFLIGTEYVVNTVSINGNHLVTEIVRYHKTSLN-RGSV-VYDYDELLPC- 242 (415)
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEEEEECCCEEEEEEEEECCCCCC-CCCE-EEECCEECCC-
T ss_conf 999999999999856654357867538875414685789999987896899999997255689-9865-6532035699-
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCC-CEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHH-HCCCCHHHHHHHHH
Q ss_conf 11666554444444577534876-45799999976898399997472658882238999999-83999899999999
Q gi|254781179|r 219 IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMV 293 (300)
Q Consensus 219 l~~~~~~~i~~~a~~~~~alg~~-g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~-~~G~s~~~li~~ii 293 (300)
+.+..+++.+++.++.++||++ |.+++|++++. +| +.++|+|++.+= ++.|.+.+ ..|++..++.....
T Consensus 243 -~~~~~~~l~~y~~~~l~ALGi~~G~~H~Ev~lt~-~g-p~liE~~~R~~G---~~~~~~~~~~~g~~~~~~~v~~~ 313 (415)
T PRK07206 243 -TSPEYQELVDYTKKALDALGIKNGPAHAEIMLTS-DG-PVLIETGARLDG---GLHPDAARVATGFSQLDLTAQSL 313 (415)
T ss_pred -CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC-CC-CEEEEECCCCCC---CCCHHHHHHCCCCCHHHHHHHHH
T ss_conf -8489999999999999983877577218999828-98-289996787789---86478998705879999999985
No 28
>PRK08463 acetyl-CoA carboxylase; Validated
Probab=99.97 E-value=2.4e-29 Score=208.29 Aligned_cols=265 Identities=17% Similarity=0.228 Sum_probs=196.3
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCH----------------------------HHHHHHCCCCEEEECCCCCCCCCCHHHH
Q ss_conf 999999999879889996158656----------------------------8888753998999925488434310235
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSV----------------------------GLVLAHLKPDLAFNVLHGNFGEDGLVQA 70 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~----------------------------~~~l~~~~~D~vf~~lhG~~gEdg~iq~ 70 (300)
|..|..+++++|++++.++.+.+- .......+.|.|.|= .|...||-.+..
T Consensus 14 A~Riirt~relgi~tVavys~~D~~s~hv~~Adea~~lg~~~~~sYLn~~~Ii~~A~~~gadAiHPG-YGFLSEna~FA~ 92 (478)
T PRK08463 14 AVRIIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTDPIKGYLDVKRIVEIAKACGADAIHPG-YGFLSENYEFAK 92 (478)
T ss_pred HHHHHHHHHHCCCCEEEEECHHHCCCCHHHHCCEEEECCCCHHHHHCCHHHHHHHHHHHCCCEEECC-CCCCCCCHHHHH
T ss_conf 9999999998399789997857657834775787665288734530699999999998499999368-762346999999
Q ss_pred HHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEE-CCC--C--CHHHHHCCCCEEEEECCCCCCCCEEEEC
Q ss_conf 6664321002310023320365001000021210000121320-222--0--0012210586256432477642114325
Q gi|254781179|r 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRF--T--MDSQHLISPPYVIKPLKGGSSLGIIVIK 145 (300)
Q Consensus 71 ~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~-~~~--~--~~~~~~~~~P~ivKP~~ggsS~Gv~~v~ 145 (300)
.++..||-|+||++.+....-||..+|+++.+.|+|+.|+.-- ... + ......+|||+++|++.||+++|+.+|+
T Consensus 93 ~~~~~Gi~FIGPs~~~i~~~GdK~~Ar~~a~~~gVPvvpg~~~~~~~~~~~~~~~a~~iGyPv~lKA~~GGGGrGmrvv~ 172 (478)
T PRK08463 93 AVEDAGLIFIGPKSEVIRKMGNKNIARKLMAKNGIPIVPGTEKLNSESMEEIKIFARKIGYPVILKASGGGGGRGIRVVW 172 (478)
T ss_pred HHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEC
T ss_conf 99978998999499999998648999999998399846676778876799999999865980478403599987117855
Q ss_pred CHHHHHHHHHHHC----CCCCCCCCCCCCCCC-CCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-C
Q ss_conf 9899999886300----366885422333578-845788731444420022025543333110000112222458652-1
Q gi|254781179|r 146 KDQSIPLDLLQSS----SWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219 (300)
Q Consensus 146 ~~~el~~~~~~~~----~~~~~~~vlVEefI~-G~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~-l 219 (300)
+.+++..++.... +.--++.+++|+||+ .|.++|-|++|+.-.++.+...+..+ +.++ ....+..|++ +
T Consensus 173 ~~~el~~~~~~a~~ea~~~Fg~~~v~iEk~i~~~RHiEVQvlgD~~Gnvi~l~eRdCSi---QRr~--QKviEeaPap~l 247 (478)
T PRK08463 173 KEEDLENAFESCKREAKAYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSI---QRRH--QKVIEIAPCPGI 247 (478)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEEEECCCCEEEEEEEECCC---CCCC--CEEEEECCCCCC
T ss_conf 78999999999999999846998547887502451789999861799788963051343---3467--516896699987
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCC-CHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 1666554444444577534876457999999768983999974726588-822389999998399989999999997511
Q gi|254781179|r 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM-TPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 (300)
Q Consensus 220 ~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGl-t~~s~~p~~~~~~G~s~~~li~~ii~~A~~ 298 (300)
++++++++.+.|.++++++|++|.+.|+|++|+ ++++||+||||+==- ++.+ .+ ..|+ ||+...|+-|+.
T Consensus 248 ~~~~r~~m~~~A~~la~~v~Y~~aGTvEFL~d~-~~~fyFlEmNtRlQVEHpVT---E~--vTGv---DLV~~Qi~iA~G 318 (478)
T PRK08463 248 SDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDD-YNNFYFMEMNTRIQVEHGVT---EE--ITGI---DLIVRQIRIAAG 318 (478)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC-CCCEEEEEEECCCCCCCCCC---CE--ECCC---CHHHHHHHHHCC
T ss_conf 889999998899876663051665338988838-99789996075545566541---10--0388---689999998679
No 29
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.97 E-value=5.7e-29 Score=205.82 Aligned_cols=267 Identities=16% Similarity=0.242 Sum_probs=211.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC---------------------CCHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf 787127889999999999999879889996158---------------------65688887539989999254884343
Q gi|254781179|r 7 GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFGED 65 (300)
Q Consensus 7 G~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~---------------------~~~~~~l~~~~~D~vf~~lhG~~gEd 65 (300)
|.+-|-|- ++-+.+++|++.||+++++..+ ++...++...+|+-|+.-+.|+..-+
T Consensus 567 GqgiEFDY---~~v~a~~alk~~G~~~imIN~NPETVSTD~d~sDrLYFEplt~E~V~~I~~~E~p~gvi~qfGGQt~~n 643 (1063)
T PRK05294 567 GQGIEFDY---CCVHAALALREAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIIEKEKPKGVIVQFGGQTPLK 643 (1063)
T ss_pred CCCCCCHH---HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHH
T ss_conf 44423006---799999999965981589537811111565667614543688999999999758987999738836789
Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCC--HHHHHCCCCEEEEECCCCCCCCEEE
Q ss_conf 10235666432100231002332036500100002121000012132022200--0122105862564324776421143
Q gi|254781179|r 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIV 143 (300)
Q Consensus 66 g~iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~--~~~~~~~~P~ivKP~~ggsS~Gv~~ 143 (300)
+..-|+..|++..|+++.+..+|.|+..++++|.+.||++|+|..+.+.+. ...+.+|||++|.|+.==++.|+.+
T Consensus 644 --la~~L~~~g~~ilGts~~~Id~aEDR~~F~~~l~~l~i~qp~~~~a~s~~ea~~~a~~iGyPvlvRPSyVLGG~~M~i 721 (1063)
T PRK05294 644 --LAKALEAAGVPILGTSPDAIDLAEDRERFQKLLEKLGIKQPPNGTATSVEEALEIAEEIGYPVLVRPSYVLGGRAMEI 721 (1063)
T ss_pred --HHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHCCCCEEECCCCCCCCCCEEE
T ss_conf --999999879947778878878787588899999865999999707668999999998649866843431025771478
Q ss_pred ECCHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CEEEEEECCCCC-CC---EEEECCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 2598999998863003668854223335788-457887314444-20---02202554333311000011222245865-
Q gi|254781179|r 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDAS-LD---VTEIAVPKSDFYSYELKYSSLNSTHVLPA- 217 (300)
Q Consensus 144 v~~~~el~~~~~~~~~~~~~~~vlVEefI~G-~E~~v~Vl~~~~-~~---~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa- 217 (300)
++|.+||...+........+.++||++||+| .|++|-.+.|+. +- ++| .+...+ -|+|++..+.|+
T Consensus 722 v~~~~eL~~yl~~a~~vs~~~pvlIdkfl~ga~E~eVDai~Dg~~v~I~gImE-HIE~AG-------VHSGDS~~V~Pp~ 793 (1063)
T PRK05294 722 VYDEEELERYMREAVKVSPDHPVLIDRFLEDAIEVDVDAICDGEDVLIGGIME-HIEEAG-------VHSGDSACSLPPY 793 (1063)
T ss_pred ECCHHHHHHHHHHHHHHCCCCCEEEEHHHHHCHHHHHHEEECCCEEEEEEEEE-ECCCCC-------CCCCCCEEEECCC
T ss_conf 56999999999999863899977863543202454430231488489999872-001457-------5667842881685
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 211666554444444577534876457999999768983999974726588822389999998399989999999
Q gi|254781179|r 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 (300)
Q Consensus 218 ~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~~i 292 (300)
.|+++..++|++++.++.++|+++|..+|.|.+ +++++|+||+||+-. -.+|...++.|+.+.++-..+
T Consensus 794 ~Ls~~~~~~i~~~t~~ia~~l~v~G~~NiQf~v--k~~~vyVIE~NpRaS----RtvPfvSKatg~pl~~iAtk~ 862 (1063)
T PRK05294 794 TLSEEIIDEIREQTKKLALELNVVGLMNVQFAV--KDDEVYVIEVNPRAS----RTVPFVSKATGVPLAKIAARV 862 (1063)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE--CCCEEEEEEECCCCC----CCCHHHHHHCCCCHHHHHHHH
T ss_conf 589999999999999999855666642033554--098389999447444----530445764199799999999
No 30
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.97 E-value=2.4e-28 Score=201.88 Aligned_cols=266 Identities=19% Similarity=0.256 Sum_probs=208.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC---------------------CCHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf 787127889999999999999879889996158---------------------65688887539989999254884343
Q gi|254781179|r 7 GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFGED 65 (300)
Q Consensus 7 G~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~---------------------~~~~~~l~~~~~D~vf~~lhG~~gEd 65 (300)
|.+-|-|- +.-+.+.+|++.||+++++..+ ++...++...+|+-|+.-+.|+..-+
T Consensus 568 GqgiEFDY---c~vha~~aLr~~G~etImiN~NPETVSTDyD~sDrLYFEPlt~E~V~~I~~~E~p~gVivqfGGQt~ln 644 (1068)
T PRK12815 568 GQGIEFDY---MCVHAAFALKKEGYETIMINNNPETVSTDYDTADRLYFEPITLEDILNVAEAENIKGVIVQFGGQTAIN 644 (1068)
T ss_pred CCCCCCHH---HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHH
T ss_conf 24424002---589999999968974899627843123674557735753687999999999858997999648823679
Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCC--HHHHHCCCCEEEEECCCCCCCCEEE
Q ss_conf 10235666432100231002332036500100002121000012132022200--0122105862564324776421143
Q gi|254781179|r 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIV 143 (300)
Q Consensus 66 g~iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~--~~~~~~~~P~ivKP~~ggsS~Gv~~ 143 (300)
+..-|+..|++..|.++.+..++.|+..+++++.+.||+.|+|..+.+.+. ...+.+|||++|.|..--++.++.+
T Consensus 645 --la~~L~~~gv~IlGts~~~Id~aEdR~~F~~ll~~l~i~~p~~~~~~~~~ea~~~a~~iGyPvlvRPSyvLgG~~m~i 722 (1068)
T PRK12815 645 --LAKPLEEAGLPILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATSEEEALAFAKRIGYPVLIRPSYVIGGQGMAV 722 (1068)
T ss_pred --HHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHCCCCEEECCCCCCCCCEEEE
T ss_conf --999999769949827868864241399999999973899999635456679999998649977842443357742389
Q ss_pred ECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCC-CCCEEEE--CCCCCCCCCCCCCCCCCCCCCCCCC-CC
Q ss_conf 259899999886300366885422333578845788731444-4200220--2554333311000011222245865-21
Q gi|254781179|r 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-SLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPA-KI 219 (300)
Q Consensus 144 v~~~~el~~~~~~~~~~~~~~~vlVEefI~G~E~~v~Vl~~~-~~~~~ei--~~~~~~~~dy~~Ky~~~~~~~~~Pa-~l 219 (300)
+++.++|...+... .....+++|++||+|+|++|-.+.|+ .+-+..| .+...+ -|+|++..+.|+ .|
T Consensus 723 v~~~~eL~~y~~~a--~~~~~pvlIdkfl~g~E~evDai~Dg~~v~I~gImEHIE~AG-------VHSGDS~~v~Pp~~L 793 (1068)
T PRK12815 723 VYDEPALEAYLEEN--VQQLYPILIDQFIDGKEYEVDAISDGEDVTIPGIIEHIEQAG-------VHSGDSIAVLPPQSL 793 (1068)
T ss_pred ECCHHHHHHHHHHH--CCCCCCEEEEECCCCCEEEEEEEECCCCEEEEEEEECHHHCC-------CCCCCCEEEECCCCC
T ss_conf 75999999999851--578885562300054046889996499559999642113146-------656885488389878
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 1666554444444577534876457999999768983999974726588822389999998399989999999
Q gi|254781179|r 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 (300)
Q Consensus 220 ~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~~i 292 (300)
++++.++|++++.++.++|+++|+.++.|.+. ++++|+|||||+.+ -.+|...++.|+++.++-..+
T Consensus 794 s~~~~~~i~~~t~kia~~L~v~Gl~NiQfavk--~~~vyVIEvNpRAS----RTvPFvSKatG~pl~~iAtkv 860 (1068)
T PRK12815 794 SPEQQAKIRDQAIKIAKKLGFRGIMNIQFLLA--GDEIYVLEVNPRAS----RTVPFVSKATGVPLAKLATKV 860 (1068)
T ss_pred CHHHHHHHHHHHHHHHHHCEEECCEEEEEEEE--CCEEEEEEEECCCC----CCHHHHHHHCCCCHHHHHHHH
T ss_conf 99999999999999996483545126999997--99899999618755----432667873298899999999
No 31
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.96 E-value=5.3e-28 Score=199.63 Aligned_cols=244 Identities=19% Similarity=0.255 Sum_probs=179.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC--------------------HHHHHHHCCCCEEEECCCC
Q ss_conf 28983678712788999999999999987988999615865--------------------6888875399899992548
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------------------VGLVLAHLKPDLAFNVLHG 60 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~--------------------~~~~l~~~~~D~vf~~lhG 60 (300)
|+||-||. | |+.++.+.+++|++|+.+|.+.+ +....+..++|+|-.-.+-
T Consensus 15 IgIlGgGQ-------L--g~Mla~aA~~LG~~vivld~~~d~PA~~vAd~~~~~~~~D~~al~~~a~~~~~DvvT~E~E~ 85 (395)
T PRK09288 15 VMLLGSGE-------L--GKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAVIEREKPDLIVPEIEA 85 (395)
T ss_pred EEEECCCH-------H--HHHHHHHHHHCCCEEEEECCCCCCCHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCC
T ss_conf 99989889-------9--99999999987998999848995944672865797787899999999998389989978544
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCC-CCCEEECCCEEEECCCCC--HHHHHCCCCEEEEECCCCC
Q ss_conf 8434310235666432100231002332036500100002-121000012132022200--0122105862564324776
Q gi|254781179|r 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV-SSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGS 137 (300)
Q Consensus 61 ~~gEdg~iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l-~~~gIptp~~~~~~~~~~--~~~~~~~~P~ivKP~~ggs 137 (300)
- +...-..||..|++.. |++.+..+++||...|+++ +++|||||+|..+++.+. .....+|||+|+||+.|+.
T Consensus 86 V---~~~~L~~le~~G~~v~-Ps~~al~i~qdR~~~k~~~~~~lgIPt~~f~~v~s~~el~~~~~~lG~P~vlK~~~G~D 161 (395)
T PRK09288 86 I---ATDALVELEAEGFNVV-PTARATRLTMNREGIRRLAAEELGLPTSPYRFADSLEELRAAVEEIGYPCVVKPVMSSS 161 (395)
T ss_pred C---CHHHHHHHHHCCCEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf 7---8899999986893367-99999999876789999999746999999547089999999999829875872241578
Q ss_pred CCCEEEECCHHHHHHHHHHHCCC--CCCCCCCCCCCCCC-CEEEEEECCCC--C---CCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 42114325989999988630036--68854223335788-45788731444--4---20022025543333110000112
Q gi|254781179|r 138 SLGIIVIKKDQSIPLDLLQSSSW--NHGDQLLIEQYVDG-IELTCGVMGDA--S---LDVTEIAVPKSDFYSYELKYSSL 209 (300)
Q Consensus 138 S~Gv~~v~~~~el~~~~~~~~~~--~~~~~vlVEefI~G-~E~~v~Vl~~~--~---~~~~ei~~~~~~~~dy~~Ky~~~ 209 (300)
++|+.++++.+|++.++...... ....++++|+||+. +|++|-+..+. . +++++- ...+++
T Consensus 162 GKGq~~v~~~~dl~~a~~~a~~~~~~~~~~~ivE~~v~f~~E~Svi~aR~~~g~~~~~~pve~-~~~~gi---------- 230 (395)
T PRK09288 162 GKGQSVVRSPEDIEAAWEYAQEGGRGGAGRVIVEEFIDFDYEITLLTVRAVDGGTHFCAPIGH-RQEDGD---------- 230 (395)
T ss_pred CCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCCCEEEECCCCC-EEECCE----------
T ss_conf 875289668788899999998507578970899888536179999999969998899668542-553342----------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCH
Q ss_conf 2224586521166655444444457753487645799999976898399997472658882
Q gi|254781179|r 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 (300)
Q Consensus 210 ~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~ 270 (300)
-...+.|+++++++.++++++|+++.++|++.|+..|+||+.. +++||+|+||+|+-|-
T Consensus 231 l~~s~~Pa~i~~~v~~~a~~ia~~i~~~L~~vGvl~VEfFv~~--d~llvNEiAPR~HNSG 289 (395)
T PRK09288 231 YRESWQPQPMSPAALEEAQEIAKKVTDALGGRGLFGVELFVKG--DEVYFSEVSPRPHDTG 289 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC--CEEEEEEECCCCCCCC
T ss_conf 7997157789999999999999999997487144889999978--9089999207877862
No 32
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family; InterPro: IPR004666 Escherichia coli RimK adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6. Mutation of the Glu-Glu terminus to Lys-Glu blocked addition. S6 has the C-terminal sequence Glu-Glu in few species, suggesting the homolog of rimK may have a function other than S6 modification in those species. However, most species having a member of this protein subfamily do not have an S6 homolog ending in Glu-Glu.; GO: 0006464 protein modification process.
Probab=99.96 E-value=3.9e-28 Score=200.52 Aligned_cols=258 Identities=21% Similarity=0.237 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCHHHH------------------HHHCCCCEEEECCCCCCC---CCCHHHHHHHH
Q ss_conf 999999999999879889996158656888------------------875399899992548843---43102356664
Q gi|254781179|r 16 LSSGKACASALEDAGFKVSQIDVDRSVGLV------------------LAHLKPDLAFNVLHGNFG---EDGLVQAILEL 74 (300)
Q Consensus 16 l~S~~~i~~aL~~~g~~v~~id~~~~~~~~------------------l~~~~~D~vf~~lhG~~g---Edg~iq~~le~ 74 (300)
+.+-+.+.+++++.|+++..+++....... .....+|+|++-.-++|= .+-.+...||.
T Consensus 17 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~I~~~~~~~~~~~~~~~~d~~~~R~~TPWv~~~~~~~~~r~lE~ 96 (321)
T TIGR00768 17 LYDEKMLKEAAEERGIDYKVVTPPEIVLTFNQPAAFSIFYKEPRKNKELALAELDVVIVRIGTPWVSSFRGLAVLRALES 96 (321)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCHHHEECCCCCCCCEEECCCCCCCCHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 78999999999971795367604122003688851001114541001023117888998389975110268899999985
Q ss_pred HHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEEC--------CCCC--HHHHHCC---CCEEEEECCCCCCCCE
Q ss_conf 3210023100233203650010000212100001213202--------2200--0122105---8625643247764211
Q gi|254781179|r 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--------RFTM--DSQHLIS---PPYVIKPLKGGSSLGI 141 (300)
Q Consensus 75 ~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~--------~~~~--~~~~~~~---~P~ivKP~~ggsS~Gv 141 (300)
+|++.+.| +.+...|.||++|.+.|.++|||+|++.+.. +.+. ...+.++ ||+|+||+.|+-+++|
T Consensus 97 ~G~~~~N~-s~aI~~a~dK~~s~~~L~~~G~P~P~~~~~~PqnfDReW~~~~a~~~ie~~g~lEfP~V~Kp~~GS~G~~V 175 (321)
T TIGR00768 97 LGVPVINS-SQAILNAGDKVLSHQLLAKAGVPLPRTGVAGPQNFDREWSPEEALKLIEEIGQLEFPVVLKPVFGSWGRLV 175 (321)
T ss_pred CCCEECCC-HHHHHHCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCEE
T ss_conf 89631070-69986214658999999958689873357366322435898899999987317642458717856354268
Q ss_pred EEECCHHHHHHHHHHHCCCC--CCCCCCCCCCCC----C-CEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43259899999886300366--885422333578----8-4578873144442002202554333311000011222245
Q gi|254781179|r 142 IVIKKDQSIPLDLLQSSSWN--HGDQLLIEQYVD----G-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 (300)
Q Consensus 142 ~~v~~~~el~~~~~~~~~~~--~~~~vlVEefI~----G-~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~ 214 (300)
++++++.+++..+....... ...-+||||||+ | |++.|.|+||+.+.++......++| .+.-+.|+..
T Consensus 176 ~l~~D~~~~~~~~e~~~~~~~~~~~~~~~QeyI~Pv~~~grDIR~fVvGd~v~aA~~R~~~~~~w---~~N~a~GG~a-- 250 (321)
T TIGR00768 176 SLARDKQAAETLLEHFEQLNGPQYKVFLVQEYIKPVKPGGRDIRVFVVGDEVVAAIYRIITSGHW---RTNLARGGKA-- 250 (321)
T ss_pred EEEECHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCCCH---HHHHHCCCCC--
T ss_conf 98506789999999997218833235788720113257893189999889201333541788302---4355438821--
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECC-C--CEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 865211666554444444577534876457999999768-9--839999747265888223899999983999899999
Q gi|254781179|r 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL-S--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 (300)
Q Consensus 215 ~Pa~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~-~--g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~ 290 (300)
.|+.++ ++++++|+|+.++||+ +++.||++.++. + +-+.|+|||+.|+|...+. ..|++-++.|.
T Consensus 251 ~~~~l~----~e~~~LA~ka~~a~g~-~v~giDlle~~~r~dw~GL~V~EVN~~~~f~~~~~------~tgvniA~~l~ 318 (321)
T TIGR00768 251 EPCSLT----EEIEELAIKAAKALGL-DVAGIDLLESKDRDDWGGLLVLEVNANPEFKNSVK------TTGVNIAGKLL 318 (321)
T ss_pred CCCCCC----HHHHHHHHHHHHHHCC-CEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCEE------ECCCCHHHHHH
T ss_conf 245258----8999999999999768-34899776626854257837999849977001111------11677689999
No 33
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.96 E-value=3.2e-27 Score=194.64 Aligned_cols=269 Identities=18% Similarity=0.243 Sum_probs=192.5
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-----------HHCCCCEEEECCCCCCCC-CCHH
Q ss_conf 2898367871278899999999999998798899961586568888-----------753998999925488434-3102
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-----------AHLKPDLAFNVLHGNFGE-DGLV 68 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l-----------~~~~~D~vf~~lhG~~gE-dg~i 68 (300)
|+||.=.+ ++-|.+++.++.++.||++..+|+.+-....- .-..+|.|++-+--...- .-.+
T Consensus 3 i~iLs~~~------~~yst~RL~eaa~~rGh~v~vidp~~~~~~i~~~~~~v~~~g~~L~~~DavipR~g~~~t~~~~~v 76 (300)
T PRK10446 3 IAILSRDG------TLYSCKRLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAA 76 (300)
T ss_pred EEEEECCC------CCCHHHHHHHHHHHCCCEEEEEEHHHCEEEECCCCCEEEECCEECCCCCEEEECCCCCCCHHHHHH
T ss_conf 99993699------760799999999987995999614891898248986499898086878889982677745589999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCH--HHHHC-CCCEEEEECCCCCCCCEEEEC
Q ss_conf 356664321002310023320365001000021210000121320222000--12210-586256432477642114325
Q gi|254781179|r 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLI-SPPYVIKPLKGGSSLGIIVIK 145 (300)
Q Consensus 69 q~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~--~~~~~-~~P~ivKP~~ggsS~Gv~~v~ 145 (300)
--.||++|+|.+ +++.+...|.||+.+.++|+++|||+|++.+....+.. ..+.+ ++|+|+||..|.-+.||.+++
T Consensus 77 Lr~lE~~Gv~vi-N~~~aI~~~~DKl~t~qlL~~~gip~P~T~~~~~~~~~~~~i~~~gg~PvViKpl~Gs~G~GV~l~e 155 (300)
T PRK10446 77 LRQFEMLGSYPL-NESVAIARARDKLRSMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAE 155 (300)
T ss_pred HHHHHHCCCCEE-CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEE
T ss_conf 999998899186-4899999857699999999875979998898369999999999808997899967898860369973
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCC---CCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 989999988630036688542233357---88457887314444200220255433331100001122224586521166
Q gi|254781179|r 146 KDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222 (300)
Q Consensus 146 ~~~el~~~~~~~~~~~~~~~vlVEefI---~G~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~l~~~ 222 (300)
+.++++..+.... ..+..+++|||| .|+++.|.|+|++.+..+....+.++| .+..+.|.... |.+++
T Consensus 156 ~~~~~~~i~~~~~--~~~~~~~iQeyI~~~~g~D~Rv~vvgg~vvaam~R~~~~g~~---rtN~~~Gg~~~--~~~l~-- 226 (300)
T PRK10446 156 TRQAAESVIDAFR--GLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKEGDF---RSNLHRGGAAS--VASIT-- 226 (300)
T ss_pred CHHHHHHHHHHHH--HCCCCEEEEEECCCCCCCCEEEEEECCEEHHHEEEECCCCCE---EEEEECCCEEE--ECCCC--
T ss_conf 7899999999886--228737752202555798679999998624438997378834---77770397765--32899--
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHH-HHHHHHH
Q ss_conf 6554444444577534876457999999768983999974726588822389999998399989999-9999975
Q gi|254781179|r 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL-LWMVEDA 296 (300)
Q Consensus 223 ~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li-~~ii~~A 296 (300)
++.+++|.++.+++|+ +++.||++.+. +| +|++|||+.||+. -..++.|.+-++.+ +.|-+.|
T Consensus 227 --~e~~~la~~a~~~lgl-~~~GVDii~~~-~g-~~v~EVN~~Pg~~------gi~~~tgvdiA~~Ii~~ie~~~ 290 (300)
T PRK10446 227 --PQEREIAIKAARTMAL-DVAGVDILRAN-RG-PLVMEVNASPGLE------GIEKTTGIDIAGKMIRWIERHA 290 (300)
T ss_pred --HHHHHHHHHHHHHHCC-CEEEEEEEEEC-CC-CEEEEECCCHHHH------HHHHHHCCCHHHHHHHHHHHHC
T ss_conf --9999999999998699-68999998828-99-8899993874278------8988759898999999999767
No 34
>KOG0238 consensus
Probab=99.95 E-value=6.3e-27 Score=192.75 Aligned_cols=266 Identities=21% Similarity=0.320 Sum_probs=192.7
Q ss_pred HHHHHHHHHHCCCEEEEECC--CCCHHHH-HHHC--------------CCCEEE--------ECCCCCC---CCCCHHHH
Q ss_conf 99999999987988999615--8656888-8753--------------998999--------9254884---34310235
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDV--DRSVGLV-LAHL--------------KPDLAF--------NVLHGNF---GEDGLVQA 70 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~--~~~~~~~-l~~~--------------~~D~vf--------~~lhG~~---gEdg~iq~ 70 (300)
|-+|.+.++++|.+++.++. |++..+. ++.. +-|-++ -++|..| .|+..+..
T Consensus 10 AcRVirTakkmGI~tVAV~Sd~D~~SlHVk~ADeav~ig~a~~~~SYL~~~~I~~aa~~tgaqaihPGYGFLSEn~~Fae 89 (670)
T KOG0238 10 ACRVIRTAKKMGIRTVAVYSDADRNSLHVKMADEAVCIGPAPAAQSYLRMDKIIDAAKRTGAQAIHPGYGFLSENAEFAE 89 (670)
T ss_pred EEHHHHHHHHHCCEEEEEECCCCCCCCEEECCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHH
T ss_conf 51156679972975899971576343200004510342887344434137899999986288462178553235538999
Q ss_pred HHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEEC--CCC--CHHHHHCCCCEEEEECCCCCCCCEEEECC
Q ss_conf 66643210023100233203650010000212100001213202--220--00122105862564324776421143259
Q gi|254781179|r 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 (300)
Q Consensus 71 ~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~--~~~--~~~~~~~~~P~ivKP~~ggsS~Gv~~v~~ 146 (300)
+|+..||.|+||++.++.---||...|++|+++|+|+.+.+-.. +.+ ...+..++||++||++.||+++|+.++.+
T Consensus 90 ~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIgyPvMiKa~~GGGGkGMria~~ 169 (670)
T KOG0238 90 LCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIGYPVMIKATAGGGGKGMRIAWS 169 (670)
T ss_pred HHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECC
T ss_conf 99876986879887998873125778999986499613685643266799999998619857999515788763175148
Q ss_pred HHHHHHHHHHH----CCCCCCCCCCCCCCCC-CCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CH
Q ss_conf 89999988630----0366885422333578-845788731444420022025543333110000112222458652-11
Q gi|254781179|r 147 DQSIPLDLLQS----SSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220 (300)
Q Consensus 147 ~~el~~~~~~~----~~~~~~~~vlVEefI~-G~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~-l~ 220 (300)
++|....+... .+.--++.+|+|+||+ .|.++|.|++|+.-.++.....+..+ +. ......+..|++ |+
T Consensus 170 ~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQv~gD~hGnav~l~ERdCSv---QR--RnQKiiEEaPap~l~ 244 (670)
T KOG0238 170 EEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQVFGDKHGNAVHLGERDCSV---QR--RNQKIIEEAPAPNLP 244 (670)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEEEECCCCCEEEECCCCCCH---HH--HHHHHHHCCCCCCCC
T ss_conf 6889999998888887631864110777636875489999734777688850454424---23--211566308999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCC-CHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 666554444444577534876457999999768983999974726588-822389999998399989999999997511
Q gi|254781179|r 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM-TPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 (300)
Q Consensus 221 ~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGl-t~~s~~p~~~~~~G~s~~~li~~ii~~A~~ 298 (300)
++++.++.+.|.++++++|+.|.+.|+|++|+ .+++||+|+||+=-. +|. ..| -.| .||++++|+-|..
T Consensus 245 ~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~-~~~FyFmEmNTRLQVEHPv---TEm--Itg---~DLVewqiRvA~g 314 (670)
T KOG0238 245 EETRRALGEAAVRAAKAVGYVGAGTVEFIVDS-KDNFYFMEMNTRLQVEHPV---TEM--ITG---TDLVEWQIRVAAG 314 (670)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC-CCCEEEEEEECEEEECCCC---HHH--CCC---HHHHHHHHHHHCC
T ss_conf 89999999999999886387644449999837-8857999840225303641---632--122---2789999998649
No 35
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=99.95 E-value=1.5e-26 Score=190.24 Aligned_cols=267 Identities=20% Similarity=0.302 Sum_probs=196.7
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCH--HHH-HHH--------------CCCCEEE--------ECCCCCCC---CCCHHHH
Q ss_conf 999999999879889996158656--888-875--------------3998999--------92548843---4310235
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSV--GLV-LAH--------------LKPDLAF--------NVLHGNFG---EDGLVQA 70 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~--~~~-l~~--------------~~~D~vf--------~~lhG~~g---Edg~iq~ 70 (300)
|-.|..+++++|+.++.|+.|.+- .+. +.. +.+|-++ .++|..|| |+..+..
T Consensus 14 AcRVIRtar~lGi~tVAVYSdaDa~A~hV~~ADEAv~iGpapaaeSYL~~dkIi~Aa~~tGA~AIHPGYGFLSENa~FA~ 93 (645)
T COG4770 14 ACRVIRTARDLGIRTVAVYSDADADALHVRMADEAVHIGPAPAAESYLDIDKIIDAARRTGAQAIHPGYGFLSENADFAQ 93 (645)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCHHHHCCCCCHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
T ss_conf 68999999980995699972577785266641224431799601212268899999997383213688421235989999
Q ss_pred HHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCC----CHHHHHCCCCEEEEECCCCCCCCEEEECC
Q ss_conf 66643210023100233203650010000212100001213202220----00122105862564324776421143259
Q gi|254781179|r 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 (300)
Q Consensus 71 ~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~----~~~~~~~~~P~ivKP~~ggsS~Gv~~v~~ 146 (300)
.|+..|+-|+||++.++.---||...|+++.+.|+|+.|.+.-...+ ......+|||++||++.||+++|+.++.+
T Consensus 94 a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiGyPVlIKAsaGGGGKGMRvv~~ 173 (645)
T COG4770 94 AVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKASAGGGGKGMRVVET 173 (645)
T ss_pred HHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECC
T ss_conf 99977918978897999984467999999997499806897874458999999998639858999636899775376268
Q ss_pred HHHHHHHHHHH----CCCCCCCCCCCCCCCC-CCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CH
Q ss_conf 89999988630----0366885422333578-845788731444420022025543333110000112222458652-11
Q gi|254781179|r 147 DQSIPLDLLQS----SSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220 (300)
Q Consensus 147 ~~el~~~~~~~----~~~~~~~~vlVEefI~-G~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~-l~ 220 (300)
.+|+..++... .+.--+++++||+|++ -|.+++.|++|+.-.++.....+..+ +.++ .+..+..|++ |+
T Consensus 174 ~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRHIEiQV~aD~HGNvv~LgERdCSl---QRRh--QKVIEEAPaP~l~ 248 (645)
T COG4770 174 PEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQVFADQHGNVVHLGERDCSL---QRRH--QKVIEEAPAPFLT 248 (645)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCEEEEEEEECCCCCEEEEECCCCCH---HHHC--CHHHHCCCCCCCC
T ss_conf 8999999999999988504886476245517874489999862778788863253324---2311--2232008999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 666554444444577534876457999999768983999974726588822389999998399989999999997511
Q gi|254781179|r 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 (300)
Q Consensus 221 ~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~~ii~~A~~ 298 (300)
+++++++-+.|.+++++.|+.|-+.|+|++|. ++.+||+|+||.=--. | |-.-.-.|+ ||+.++++-|+.
T Consensus 249 ~~~R~amg~aAv~~a~avgY~gAGTVEFivd~-~~~f~FlEMNTRLQVE-H---PVTE~iTGi---DLVewqiRVA~G 318 (645)
T COG4770 249 EETREAMGEAAVAAAKAVGYVGAGTVEFIVDA-DGNFYFLEMNTRLQVE-H---PVTELITGI---DLVEWQIRVASG 318 (645)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC-CCCEEEEEEECCEECC-C---CCHHHHHHH---HHHHHHHHHHCC
T ss_conf 99999999999999986297757558999838-9868999862202025-6---412242013---899999997438
No 36
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=99.95 E-value=3.3e-26 Score=188.15 Aligned_cols=249 Identities=18% Similarity=0.291 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHCCCEEEEECCC--------------------CCHHHHHHHCCCCEEEECCCCCCCCCCHHHHH--HHHH
Q ss_conf 9999999999879889996158--------------------65688887539989999254884343102356--6643
Q gi|254781179|r 18 SGKACASALEDAGFKVSQIDVD--------------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI--LELL 75 (300)
Q Consensus 18 S~~~i~~aL~~~g~~v~~id~~--------------------~~~~~~l~~~~~D~vf~~lhG~~gEdg~iq~~--le~~ 75 (300)
-|+.++-+++++|.+|+.+|-= +.+...+++.+||++.|-++-- ..-.| ||..
T Consensus 23 LGKEvaIe~QRLG~eVIAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~re~Pd~IVpEiEAI-----~td~L~elE~~ 97 (394)
T COG0027 23 LGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVEREKPDYIVPEIEAI-----ATDALVELEEE 97 (394)
T ss_pred CCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHEEEEECCCHHHHHHHHHHHCCCEEEEHHHHH-----HHHHHHHHHHC
T ss_conf 4469999888638779996376898066421111345456999999999865898133135666-----47889999867
Q ss_pred HHHCCCCCHHHHHHCCCCHHCCCCCC-CCEEECCCEEEECCCCCH--HHHHCCCCEEEEECCCCCCCCEEEECCHHHHHH
Q ss_conf 21002310023320365001000021-210000121320222000--122105862564324776421143259899999
Q gi|254781179|r 76 EIPYTHSGILASALSMDKMRSKQVVS-SCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 (300)
Q Consensus 76 ~ipy~Gs~~~~~~l~~dK~~~k~~l~-~~gIptp~~~~~~~~~~~--~~~~~~~P~ivKP~~ggsS~Gv~~v~~~~el~~ 152 (300)
|.. +=|++.+..+|||+...++++. ++|+||.+|.+.+..+.. ....+||||+|||..++|++|.+++++.++++.
T Consensus 98 G~~-VVP~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~~e~~~a~~~iGfPcvvKPvMSSSGkGqsvv~~~e~ve~ 176 (394)
T COG0027 98 GYT-VVPNARATKLTMNREGIRRLAAEELGLPTSKYRFADSLEELRAAVEKIGFPCVVKPVMSSSGKGQSVVRSPEDVEK 176 (394)
T ss_pred CCE-ECCCHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCCCEEECCHHHHHH
T ss_conf 966-7553277773426898999889972999766321355999999999749970213320268898214359878899
Q ss_pred HHHHHCCC--CCCCCCCCCCCCCCCEEEEEECC------CCCC--CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 88630036--68854223335788457887314------4442--00220255433331100001122224586521166
Q gi|254781179|r 153 DLLQSSSW--NHGDQLLIEQYVDGIELTCGVMG------DASL--DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222 (300)
Q Consensus 153 ~~~~~~~~--~~~~~vlVEefI~G~E~~v~Vl~------~~~~--~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~l~~~ 222 (300)
++.....- .-..+++||+||+ .||++.++- +..+ |+.+.. .=.||.+.|+ |..+++.
T Consensus 177 AW~~A~~g~R~~~~RVIVE~fv~-fd~EITlLtvr~~~~~~~Fc~PIGHrq----~dgdY~ESWQ--------P~~mS~~ 243 (394)
T COG0027 177 AWEYAQQGGRGGSGRVIVEEFVK-FDFEITLLTVRAVDGTGSFCAPIGHRQ----EDGDYRESWQ--------PQEMSEA 243 (394)
T ss_pred HHHHHHHCCCCCCCCEEEEEEEC-CEEEEEEEEEEEECCCCCCCCCCCCCC----CCCCHHCCCC--------CCCCCHH
T ss_conf 99999754788887189998732-327999999997558877677766405----7887010368--------4103899
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCC---C----C-HHHHHHHHHHHC-CCCHHH
Q ss_conf 655444444457753487645799999976898399997472658---8----8-223899999983-999899
Q gi|254781179|r 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG---M----T-PVSIFPEMAAYA-GYSFRE 287 (300)
Q Consensus 223 ~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PG---l----t-~~s~~p~~~~~~-G~s~~~ 287 (300)
..++.+.+|+++.++||.+|+..|++|++ ++++||.||-|.|. | + ..|-|...+++. |+.-.+
T Consensus 244 al~~A~~IA~~vt~aLGG~GlFGVElfv~--gDeV~FsEVSPRPHDTGmVTLiSq~lsEF~LH~RAiLGLPi~~ 315 (394)
T COG0027 244 ALEEAQSIAKRVTDALGGRGLFGVELFVK--GDEVIFSEVSPRPHDTGMVTLISQDLSEFALHVRAILGLPIPE 315 (394)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEEE--CCEEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCC
T ss_conf 99999999999998605863036899972--8878985257898887249997065318999999995897642
No 37
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.95 E-value=3e-25 Score=181.99 Aligned_cols=254 Identities=20% Similarity=0.275 Sum_probs=184.7
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH----------------HH--HCCCCEEEECCCCCC
Q ss_conf 289836787127889999999999999879889996158656888----------------87--539989999254884
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------LA--HLKPDLAFNVLHGNF 62 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~----------------l~--~~~~D~vf~~lhG~~ 62 (300)
|+||-||. | |+.++.+.+++|++|..+|++.+.... +. ..+.|+|-.-.+--.
T Consensus 10 IGIlGgGQ-------L--grMla~aA~~lG~~v~vldp~~~~PA~~va~~~~~~~~~D~~al~~fa~~~DviT~E~EnI~ 80 (377)
T PRK06019 10 IGIIGGGQ-------L--GRMLALAAAPLGYKVIVLDPDADCPAAQVADRVIVADYDDVAALRELAEQCDVITYEFENVP 80 (377)
T ss_pred EEEECCCH-------H--HHHHHHHHHHCCCEEEEECCCCCCCHHHHCCEEEECCCCCHHHHHHHHHCCCEEEECCCCCC
T ss_conf 99987868-------9--99999999978998999848984984783784898688989999999845999997817689
Q ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCH--HHHHCCCCEEEEECCCC-CCC
Q ss_conf 343102356664321002310023320365001000021210000121320222000--12210586256432477-642
Q gi|254781179|r 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGG-SSL 139 (300)
Q Consensus 63 gEdg~iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~--~~~~~~~P~ivKP~~gg-sS~ 139 (300)
...+ ..||.. ++ +-+++.+.++++||...|++++++|||||+|..+++.+.. ....++||+|+|++++| .++
T Consensus 81 --~~~L-~~le~~-~~-v~P~~~al~i~QdR~~eK~~l~~lgiptapf~~v~s~~dl~~~~~~lg~P~vlKt~~~GYDGK 155 (377)
T PRK06019 81 --AEAL-DLLAAR-VP-VPPGPDALAIAQDRLTEKQFLDELGIPVAPFALVDSAEDLDAAIADLGLPAVLKTRRGGYDGK 155 (377)
T ss_pred --HHHH-HHHHHC-CC-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf --9999-999708-96-687989999886279999999976999888067189999999999729976995133461887
Q ss_pred CEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CEEEEEECCCC-----CCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11432598999998863003668854223335788-45788731444-----4200220255433331100001122224
Q gi|254781179|r 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDA-----SLDVTEIAVPKSDFYSYELKYSSLNSTH 213 (300)
Q Consensus 140 Gv~~v~~~~el~~~~~~~~~~~~~~~vlVEefI~G-~E~~v~Vl~~~-----~~~~~ei~~~~~~~~dy~~Ky~~~~~~~ 213 (300)
|+.++++.+++..++... ...++++|+||+- +|++|-+..+. .+|++|-. .+++++ ...
T Consensus 156 Gq~~i~s~~dl~~a~~~l----~~~~~i~E~~i~f~~ElSvivaR~~~G~~~~yP~~en~-h~~gil----------~~s 220 (377)
T PRK06019 156 GQWVLRSEADLDAAWAAL----GSGPCILEEFVPFEREVSVIVARGRDGEVVFYPLVENV-HRNGIL----------RTS 220 (377)
T ss_pred CCEEECCHHHHHHHHHHC----CCCCEEEEEEECCEEEEEEEEEECCCCCEEEECCHHCE-EECCEE----------EEE
T ss_conf 018977888999999865----69988999654351899999998489999994441147-777755----------899
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCH--------HHHHHHHHHHC-CCC
Q ss_conf 586521166655444444457753487645799999976898399997472658882--------23899999983-999
Q gi|254781179|r 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP--------VSIFPEMAAYA-GYS 284 (300)
Q Consensus 214 ~~Pa~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~--------~s~~p~~~~~~-G~s 284 (300)
+.|+++++++.++.+++|.++.++|++.|...|+||++. +| +||+|+-|+|.-+- .|-|-...|+. |+.
T Consensus 221 ~~Pa~~~~~~~~~a~~ia~~i~~~l~~vGvl~VE~F~~~-~~-llvNEiAPRpHNSGH~Ti~~~~~SQFe~HlRAi~glp 298 (377)
T PRK06019 221 IAPAPISADLQAQAEEIASRIAEELDYVGVLAVEFFVTG-DG-LLVNEIAPRVHNSGHWTIDACSTSQFEQHLRAIAGLP 298 (377)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CC-EEEEEECCCCCCCCCEEECCCCCCHHHHHHHHHCCCC
T ss_conf 889999999999999999999997487624999999918-93-8999725887687547642341248999999982998
Q ss_pred H
Q ss_conf 8
Q gi|254781179|r 285 F 285 (300)
Q Consensus 285 ~ 285 (300)
.
T Consensus 299 l 299 (377)
T PRK06019 299 L 299 (377)
T ss_pred C
T ss_conf 8
No 38
>pfam02222 ATP-grasp ATP-grasp domain. This family does not contain all known ATP-grasp domain members. This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity.
Probab=99.94 E-value=2.4e-26 Score=189.07 Aligned_cols=154 Identities=19% Similarity=0.298 Sum_probs=121.1
Q ss_pred CCCCEEECCCEEEECCCCC--HHHHHCCCCEEEEECCCCCC-CCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCC-CC
Q ss_conf 2121000012132022200--01221058625643247764-21143259899999886300366885422333578-84
Q gi|254781179|r 100 VSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSS-LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GI 175 (300)
Q Consensus 100 l~~~gIptp~~~~~~~~~~--~~~~~~~~P~ivKP~~ggsS-~Gv~~v~~~~el~~~~~~~~~~~~~~~vlVEefI~-G~ 175 (300)
|+++|||||+|..+++.+. ...+.+|||+||||..+|+| +|+.++++.+++..++... .+.++|+|+||+ ++
T Consensus 1 l~~~Giptp~~~~i~~~~d~~~~~~~iGyP~vvKp~~~G~~g~G~~~v~~~~el~~a~~~~----~~~~~liE~~I~~~~ 76 (171)
T pfam02222 1 LQKLGLPTPRFMAAESLEELIEAGQELGYPCVLKARRGGYDGKGQYVVRSEADIPQAWEEL----GGGPVIVEEFVPFDK 76 (171)
T ss_pred CHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCHHHHHHHHHHC----CCCCEEEEEECCCCE
T ss_conf 9020989999549899999999999709978999611025898528988999999999855----899579986046757
Q ss_pred EEEEEECCCCC-----CCEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 57887314444-----200220255433331100001122-224586521166655444444457753487645799999
Q gi|254781179|r 176 ELTCGVMGDAS-----LDVTEIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 (300)
Q Consensus 176 E~~v~Vl~~~~-----~~~~ei~~~~~~~~dy~~Ky~~~~-~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~ 249 (300)
|+++-++.+.. +++++... ..+. ...+.|+++++++.++++++|.+++++||+.|..||||+
T Consensus 77 Ei~~~~~r~~~g~~~~~~~~e~~~------------~~g~~~~~~~Pa~~~~~~~~~i~~~a~ki~~aLg~~G~~~veff 144 (171)
T pfam02222 77 ELSVLVVRSVDGETAFYPPVETIQ------------EDGICHESVAPARVPDSQQAKAQEIAKKIVDELGGVGIFGVELF 144 (171)
T ss_pred EEEEEEEECCCCCEEECCCEEEEE------------ECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 999874344999899803546688------------67818987428888989999999999999998397045999999
Q ss_pred EECCCCEEEEEEECCCCCCCH
Q ss_conf 976898399997472658882
Q gi|254781179|r 250 FDPLSRKVFWLEINVQPGMTP 270 (300)
Q Consensus 250 ~d~~~g~~~~lEvN~~PGlt~ 270 (300)
+++ +|++||+||||+|.-|-
T Consensus 145 ~~~-dG~~~v~EvnpR~h~sg 164 (171)
T pfam02222 145 VLP-DGDLLVNELAPRPHNSG 164 (171)
T ss_pred ECC-CCCEEEEEECCCCCCCC
T ss_conf 939-99799999649967757
No 39
>pfam01071 GARS_A Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain. Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam02786).
Probab=99.94 E-value=2.1e-26 Score=189.43 Aligned_cols=174 Identities=14% Similarity=0.143 Sum_probs=125.4
Q ss_pred CCHHCCCCCCCCEEECCCEEEECCCCCHH--HHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHCCC----CCCCC
Q ss_conf 50010000212100001213202220001--2210586256432477642114325989999988630036----68854
Q gi|254781179|r 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW----NHGDQ 165 (300)
Q Consensus 92 dK~~~k~~l~~~gIptp~~~~~~~~~~~~--~~~~~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~~~----~~~~~ 165 (300)
||..||++|+++|||||+|..+++.+... .+.++||+||||..+++|.||.+|++.+|+..++...... ..+.+
T Consensus 2 dK~~~r~~l~~~gip~p~~~~~~~~~ea~~~~~~~g~P~VvKp~~~~gs~Gv~~v~~~~e~~~a~~~~~~~~~~~~~~~~ 81 (193)
T pfam01071 2 SKSFAKDFMKRHGIPTAEYETFTDPEEAKSYIREAGFPAVVKADGLAAGKGVIVAMDNEEAIKAVDEILEQKKFGEAGEP 81 (193)
T ss_pred CHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 88999999998698999907878999999999976998899974346788379954589999999999852303578997
Q ss_pred CCCCCCCCCCEEEEEEC-CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHH----HHHHHHHHHHHHHHCC
Q ss_conf 22333578845788731-444420022025543333110000112222458652-11666----5544444445775348
Q gi|254781179|r 166 LLIEQYVDGIELTCGVM-GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI----YKEVQRLAFLAHQAIG 239 (300)
Q Consensus 166 vlVEefI~G~E~~v~Vl-~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~-l~~~~----~~~i~~~a~~~~~alg 239 (300)
+||||||+|.|++|..+ .++.+.++.+......+++.+...+.+...++.|++ +++++ .+++.+.+.++..+.|
T Consensus 82 vlvEefl~G~E~sv~~~~dg~~~~~~~~~~~~k~~~~~d~g~~tg~~g~~~p~~~~~~~~~~~~~~~i~~~~~~al~~~g 161 (193)
T pfam01071 82 VVIEEFLEGEEVSVLAFVDGKTVKPLPPAQDHKRLGEGDTGPNTGGMGAYSPAPVLTPELLERIKETIVEPTVDGLRKEG 161 (193)
T ss_pred EEEEEECCCCEEEEEEEEECCEEEEEEEEEEEEEECCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 89987205716557898409979971421764450157888877997246347558989999999999999999999749
Q ss_pred C--CCEEEEEEEEECCCCEEEEEEECCCCC
Q ss_conf 7--645799999976898399997472658
Q gi|254781179|r 240 C--RGISRSDFLFDPLSRKVFWLEINVQPG 267 (300)
Q Consensus 240 ~--~g~~rvDf~~d~~~g~~~~lEvN~~PG 267 (300)
+ +|..++||++++ +| +|+||+|++.|
T Consensus 162 ~~~~G~~h~e~~lt~-~G-P~vIEiN~RlG 189 (193)
T pfam01071 162 IPYKGVLYAGLMLTK-DG-PKVLEFNCRFG 189 (193)
T ss_pred CCCEEEEEEEEEEEC-CC-EEEEEEECCCC
T ss_conf 996889999999989-95-79999939998
No 40
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.94 E-value=2.2e-25 Score=182.83 Aligned_cols=238 Identities=18% Similarity=0.259 Sum_probs=185.8
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHH------------------------------HHCCCCEEEECCCCCCC---CC
Q ss_conf 9999999998798899961586568888------------------------------75399899992548843---43
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVL------------------------------AHLKPDLAFNVLHGNFG---ED 65 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l------------------------------~~~~~D~vf~~lhG~~g---Ed 65 (300)
|-+|..|..++|..++.++..++-.... +....| ++|..|| |+
T Consensus 19 AIRvFRAa~ELgi~TVAIys~ED~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII~iAk~~gaD----aIhPGYGfLSEn 94 (1149)
T COG1038 19 AIRVFRAANELGIKTVAIYSEEDRLSLHRFKADESYLIGEGKGPVEAYLSIDEIIRIAKRSGAD----AIHPGYGFLSEN 94 (1149)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCHHHHCCCCCEEECCCCCCCHHHHCCHHHHHHHHHHCCCC----EECCCCCCCCCC
T ss_conf 6999998886086489985144543044303551066067887268743299999999970887----313784324479
Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCC----CHHHHHCCCCEEEEECCCCCCCCE
Q ss_conf 1023566643210023100233203650010000212100001213202220----001221058625643247764211
Q gi|254781179|r 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGI 141 (300)
Q Consensus 66 g~iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~----~~~~~~~~~P~ivKP~~ggsS~Gv 141 (300)
-.+..-|...||-|+||.++...+.-||..++..+.+.|+|+.+..--...+ ....+..|||+|||.+.||+++|+
T Consensus 95 ~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa~~~gyPvmiKA~~GGGGRGM 174 (1149)
T COG1038 95 PEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYGYPVMIKAAAGGGGRGM 174 (1149)
T ss_pred HHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCE
T ss_conf 89999999759789688879998844288899999975998556999982129999999986698589997147986652
Q ss_pred EEECCHHHHHHHHHHHC----CCCCCCCCCCCCCCCC-CEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43259899999886300----3668854223335788-457887314444200220255433331100001122224586
Q gi|254781179|r 142 IVIKKDQSIPLDLLQSS----SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 (300)
Q Consensus 142 ~~v~~~~el~~~~~~~~----~~~~~~~vlVEefI~G-~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~P 216 (300)
.+|++.+++..++.... +.--++.+.||+||+. +.++|.|++|..-.+++....+..+ +. ......++.|
T Consensus 175 R~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkHIEVQiLgD~~GnvvHLfERDCSv---QR--RhQKVVE~AP 249 (1149)
T COG1038 175 RVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGDTHGNVVHLFERDCSV---QR--RHQKVVEVAP 249 (1149)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCEEEEEEEECCCCCEEEEEECCCCH---HH--CCCEEEEECC
T ss_conf 662588899999999889999741898066565524865268998605778788886235533---10--1440378568
Q ss_pred CC-CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCC
Q ss_conf 52-116665544444445775348764579999997689839999747265
Q gi|254781179|r 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 (300)
Q Consensus 217 a~-l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~P 266 (300)
+. |+++++++|.+.|.|+++..|+.+.+.++|.+|. +|++|||||||+=
T Consensus 250 a~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~-~~~fyFIEvNPRi 299 (1149)
T COG1038 250 APYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDE-DGKFYFIEVNPRI 299 (1149)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC-CCCEEEEEECCCE
T ss_conf 8889999999999999999997397656647888738-8868999954734
No 41
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX; InterPro: IPR011870 The family of proteins found in this family include the characterised LysX from Thermus thermophilus which is part of a well-organised lysine biosynthesis gene cluster . LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this family contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterised in Escherichia coli, and acts by ATP-dependent condensation of S6 with glutamate residues .; GO: 0003824 catalytic activity, 0005524 ATP binding, 0009085 lysine biosynthetic process.
Probab=99.93 E-value=1.1e-25 Score=184.70 Aligned_cols=255 Identities=19% Similarity=0.212 Sum_probs=179.1
Q ss_pred HHHHHHHHHCCCEEEEECCCCCHHHH-----HHHCCCCEEEECCCCCCCCCC--HHHHHHHHHHHHCCCCCHHHHHHCCC
Q ss_conf 99999999879889996158656888-----875399899992548843431--02356664321002310023320365
Q gi|254781179|r 20 KACASALEDAGFKVSQIDVDRSVGLV-----LAHLKPDLAFNVLHGNFGEDG--LVQAILELLEIPYTHSGILASALSMD 92 (300)
Q Consensus 20 ~~i~~aL~~~g~~v~~id~~~~~~~~-----l~~~~~D~vf~~lhG~~gEdg--~iq~~le~~~ipy~Gs~~~~~~l~~d 92 (300)
+.+.++|+++|+++..|...+..... -...+.|++..-.= .... ....++|..|+|-+. ++.+...|.|
T Consensus 13 KmL~e~l~~lg~~v~~i~~~~~~~~~~d~~i~~~~~~dv~i~R~V---S~~R~L~~a~~~E~~G~~~iN-~~~~i~~cgD 88 (289)
T TIGR02144 13 KMLLEELEKLGLQVRVIYVPELALPFGDLGIKELEDLDVAIIRNV---SQSRALYSAFLLEAVGVPTIN-SSHAIIACGD 88 (289)
T ss_pred HHHHHHHHHHCCCCEEEECCCEEECCCCCCCCHHCCCCEEEECHH---HHHHHHHHHHHHHHCCCEEEC-CHHHHHHHCC
T ss_conf 999999987289732662034022078856300037556898303---456799999999848971527-7589875046
Q ss_pred CHHCCCCCCCCEEECCCEEEECCCC--CHHHHHCCCCEEEEECCCCCCCC--EEEECCHHHHHHHHHHHCCC--CCCCCC
Q ss_conf 0010000212100001213202220--00122105862564324776421--14325989999988630036--688542
Q gi|254781179|r 93 KMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLG--IIVIKKDQSIPLDLLQSSSW--NHGDQL 166 (300)
Q Consensus 93 K~~~k~~l~~~gIptp~~~~~~~~~--~~~~~~~~~P~ivKP~~ggsS~G--v~~v~~~~el~~~~~~~~~~--~~~~~v 166 (300)
|+.|...|+++|||||++.++.+.+ ....+.+|||+|+||+.| |+| |+++++.++++..++..... .+.+-+
T Consensus 89 K~~T~~~L~~~gvP~P~t~~a~d~~~A~~~~e~lGYPvV~KP~~G--SWGRlV~~~~d~~~~~~llEh~e~~~~~~~~~~ 166 (289)
T TIGR02144 89 KIFTTLKLAKAGVPTPRTYIAFDREAALKAAEELGYPVVLKPVIG--SWGRLVSKIRDKDELESLLEHKEVLGGSQLKLY 166 (289)
T ss_pred HHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHCCCCEEEECCCC--CHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 188999999667889835898286899999997089889708888--437887640378898899999998679763337
Q ss_pred CCCCCC--CCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 233357--884578873144442002202554333311000011222245865211666554444444577534876457
Q gi|254781179|r 167 LIEQYV--DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 (300)
Q Consensus 167 lVEefI--~G~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~g~~ 244 (300)
+||||| |||+|.|.|+||+.+..+-...+.++|-+.-| -| -.-.|+++++ +++++|.|+++++|. ++.
T Consensus 167 y~QEfi~KPgRDIR~fViGd~~~~AIYR~~~P~~W~TNtA---rG--G~A~P~~~~~----e~~~La~kA~~avgg-~~~ 236 (289)
T TIGR02144 167 YVQEFINKPGRDIRVFVIGDEAIAAIYRYSEPNHWRTNTA---RG--GKAEPCKIDE----EVEELAVKAAEAVGG-EVV 236 (289)
T ss_pred EEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCHHHHHH---CC--CCCCCCCCCH----HHHHHHHHHHHHHCC-EEE
T ss_conf 9998871889608999997973167883388530255630---58--8447887687----689999999999788-278
Q ss_pred EEEEEEECCC----CEEEEEEECCCCCCCHHHHHHHHHHHCCCCHH-HHHHHHHHHH
Q ss_conf 9999997689----83999974726588822389999998399989-9999999975
Q gi|254781179|r 245 RSDFLFDPLS----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR-ELLLWMVEDA 296 (300)
Q Consensus 245 rvDf~~d~~~----g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~-~li~~ii~~A 296 (300)
.||++=++.+ |-+.++|||+.|=+ ++ ..+..|.+-+ .|++++++.+
T Consensus 237 ~iDi~Es~~rqndW~GlLV~EVN~~~EF-KN-----~~rvTGvNva~~l~~yav~~~ 287 (289)
T TIGR02144 237 GIDIVESKRRQNDWGGLLVNEVNGVPEF-KN-----TVRVTGVNVAEKLVEYAVELV 287 (289)
T ss_pred EEEEEECCCCCCCCCCEEEEEECCCCCC-CC-----CEEECCCCHHHHHHHHHHHHH
T ss_conf 9988643344544378689735689772-78-----577747453789999999984
No 42
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, ATPase subunit; InterPro: IPR005875 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This family represents PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, which catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. PurK belongs to the ATP grasp superfamily of C-N ligase enzymes. Each subunit of PurK is composed of three domains (A, B, and C). The B domain contains a flexible, glycine-rich loop (B loop, T123-G130) that is disordered in the sulphate-PurK structure and becomes ordered in the MgADP-PurK structure. MgADP is wedged between the B and C domains, as with all members of the ATP grasp superfamily. Other enzymes in this superfamily contain a conserved Omega loop proposed to interact with the B loop, define the specificity of their nonnucleotide substrate, and protect the acyl phosphate intermediate formed from this substrate. PurK contains a minimal Omega loop without conserved residues. In the reaction catalyzed by PurK, carboxyphosphate is the putative acyl phosphate intermediate. The sulphate of the sulphate ion-liganded PurK interacts electrostatically with Arg 242 and the backbone amide group of Asn 245, components of the J loop of the C domain. This sulphate may reveal the location of the carboxyphosphate binding site. Conserved residues within the C-terminus of the C domain define a pocket that is proposed to bind AIR in collaboration with an N-terminal strand loop helix motif in the A domain (P loop, G8-L1). The P loop is proposed to bind the phosphate of AIR on the basis of similar binding sites observed in PurN and PurE and proposed in PurD and PurT, four other enzymes in the purine pathway .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=99.92 E-value=5.1e-24 Score=174.11 Aligned_cols=261 Identities=25% Similarity=0.320 Sum_probs=187.8
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH-HHHH--C-----------------CCCEEEECCCC
Q ss_conf 28983678712788999999999999987988999615865688-8875--3-----------------99899992548
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-VLAH--L-----------------KPDLAFNVLHG 60 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~-~l~~--~-----------------~~D~vf~~lhG 60 (300)
|+||-||. | |+.+..|-+++|+.+..++.+++... .++. . ..|++=--+
T Consensus 2 vGilGGGQ-------L--G~M~~~aA~~LG~~~~VL~~~~~~PA~q~Ad~~~~v~a~~~d~~~i~~La~~cDviT~E~-- 70 (386)
T TIGR01161 2 VGILGGGQ-------L--GRMLALAAKKLGIKVAVLDPDANSPAKQVADSREHVLASFTDPEAIRELAEACDVITFEF-- 70 (386)
T ss_pred EEEEECCH-------H--HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHCCEEEEEE--
T ss_conf 68971884-------8--999999871279589985489897311128985579985148789999997656554310--
Q ss_pred CCCCCCHHHHH--HHHHH--HHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEEC--CCC-CHH-HHHCCCCEEEEE
Q ss_conf 84343102356--66432--10023100233203650010000212100001213202--220-001-221058625643
Q gi|254781179|r 61 NFGEDGLVQAI--LELLE--IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT-MDS-QHLISPPYVIKP 132 (300)
Q Consensus 61 ~~gEdg~iq~~--le~~~--ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~--~~~-~~~-~~~~~~P~ivKP 132 (300)
|.=-.+.| |+..| ++ +-+++.+..+..||+..|++|+++|+|||+|..+. +.+ ++. ...+++|+|+|-
T Consensus 71 ---Ehv~~~~L~~L~~~g~~~~-~~P~~~~l~~~~dk~~qK~~L~~~g~~vp~f~~~~~~~~~~~~~~~~~~g~p~VlK~ 146 (386)
T TIGR01161 71 ---EHVDVEALEKLEARGDKVK-VRPSPEALAIIQDKLTQKQFLQKLGLPVPPFVVIEIKDEEELDSALQELGFPVVLKA 146 (386)
T ss_pred ---CCCCCHHHHHHHHCCCEEE-EECCHHHHHHHHCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHCCCCEEEEE
T ss_conf ---1378567899983598477-603889999883658999999966899884120223684257899987398479984
Q ss_pred CCCC-CCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CEEEEEECCCC-----CCCEEEECCCCC--CCCCCC
Q ss_conf 2477-64211432598999998863003668854223335788-45788731444-----420022025543--333110
Q gi|254781179|r 133 LKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDA-----SLDVTEIAVPKS--DFYSYE 203 (300)
Q Consensus 133 ~~gg-sS~Gv~~v~~~~el~~~~~~~~~~~~~~~vlVEefI~G-~E~~v~Vl~~~-----~~~~~ei~~~~~--~~~dy~ 203 (300)
+.+| .++|.+++++.+++..+++... ....++|||+||+- +|++|-|..+. .+|+++. ...+ ++..
T Consensus 147 ~~gGYDGrGq~~i~~~~~~~~~~~~~~--~~~~~~~~E~fV~F~~Elsv~vaR~~~G~~~~YP~ven-~~~ddagIl~-- 221 (386)
T TIGR01161 147 RRGGYDGRGQFVIKSEADLPQALKELG--DKEEELIVEEFVPFERELSVIVARSADGEIAFYPVVEN-IHQDDAGILR-- 221 (386)
T ss_pred EECCCCCCCCEEECCHHHHHHHHHHCC--CCCEEEEEEECCCCCEEEEEEEEECCCCCEEECCCEEE-EEECCCCEEE--
T ss_conf 206527731089747432889998528--88405898523562006999999778974888286123-5652778778--
Q ss_pred CCCCCCCCCCCCCC-CCHHHH---HHHHHHHHHHHHHHCCCCCEEEEEEEEE--CCCC----EEEEEEECCCCCCCHHHH
Q ss_conf 00011222245865-211666---5544444445775348764579999997--6898----399997472658882238
Q gi|254781179|r 204 LKYSSLNSTHVLPA-KIPLDI---YKEVQRLAFLAHQAIGCRGISRSDFLFD--PLSR----KVFWLEINVQPGMTPVSI 273 (300)
Q Consensus 204 ~Ky~~~~~~~~~Pa-~l~~~~---~~~i~~~a~~~~~alg~~g~~rvDf~~d--~~~g----~~~~lEvN~~PGlt~~s~ 273 (300)
.-+.|| .++..+ .++.+++|.++.+.|++-|+..|+||+. . || +++++|+=|+|.=|-|..
T Consensus 222 --------~~~aPAPa~p~~~~Q~~~~A~~~A~~~~~~L~~VG~~avE~F~~Pa~-dGP~P~~LLvNElAPR~HNSGHyT 292 (386)
T TIGR01161 222 --------LVVAPAPAVPDALVQQQKKAQELARRLAEELDYVGVLAVEMFLLPAK-DGPEPDELLVNELAPRPHNSGHYT 292 (386)
T ss_pred --------EEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCC-CCCCCCCEEEEEECCCCCCCHHHH
T ss_conf --------98633777834578999999999999998619617888999830688-789512056610257889841265
Q ss_pred HHHHHHHCCCC-HHHHHHHHHH
Q ss_conf 99999983999-8999999999
Q gi|254781179|r 274 FPEMAAYAGYS-FRELLLWMVE 294 (300)
Q Consensus 274 ~p~~~~~~G~s-~~~li~~ii~ 294 (300)
+- .+..| |+.-|+.|++
T Consensus 293 lD----gc~tSQFE~hLRAi~~ 310 (386)
T TIGR01161 293 LD----GCSTSQFEQHLRAILG 310 (386)
T ss_pred HH----HHHHHHHHHHHHHHCC
T ss_conf 66----5433179999999708
No 43
>pfam02655 ATP-grasp_3 ATP-grasp domain. No functional information or experimental verification of function is known in this family. This family appears to be an ATP-grasp domain (Pers. obs. A Bateman).
Probab=99.91 E-value=3.1e-24 Score=175.50 Aligned_cols=155 Identities=17% Similarity=0.343 Sum_probs=111.3
Q ss_pred CCCCHHCCCCCCCCEEECCCEEEECCCCCHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 36500100002121000012132022200012210586256432477642114325989999988630036688542233
Q gi|254781179|r 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 (300)
Q Consensus 90 ~~dK~~~k~~l~~~gIptp~~~~~~~~~~~~~~~~~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~~~~~~~~vlVE 169 (300)
|.||+.|+++|+++|||||++..+.+. ..+.+|+||||+.|++|.||+++++.+++.... ..+|+|
T Consensus 1 A~DK~~t~~~l~~~gip~P~~~~~~~~-----~~~~~P~VvKP~~g~gs~Gv~~v~~~~~l~~~~---------~~~liq 66 (160)
T pfam02655 1 ASDKLKTYKALKNAGVPTPETLSAEEP-----TEEEKKYIVKPRDGCGGEGVRFVENGREDEEFI---------ENVIIQ 66 (160)
T ss_pred CCCHHHHHHHHHHCCCCCCCEEECCCH-----HHCCCCEEEECCCCCCCCCEEEEECHHHHHHHC---------CCEEEE
T ss_conf 989899999999879599999865782-----355998999808989873189994899986532---------565887
Q ss_pred CCCCCCEEEEEECCCCC-CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEE
Q ss_conf 35788457887314444-2002202554333311000011222245865211666554444444577534-876457999
Q gi|254781179|r 170 QYVDGIELTCGVMGDAS-LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI-GCRGISRSD 247 (300)
Q Consensus 170 efI~G~E~~v~Vl~~~~-~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~al-g~~g~~rvD 247 (300)
|||+|+|+++.++.+.. ..+..+....-........|. ....|+.. ...+++++++.+++++| +++|++++|
T Consensus 67 e~i~G~e~sv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~--~~~~~~~~~~~~~~~~l~~~~G~~~vd 140 (160)
T pfam02655 67 EFIEGEPLSVSLLSDGEKALPLSVNRQLIDNAGSGFVYA----GNLTPSRT--ELKEELEELAEEVVEALPGLRGYVGVD 140 (160)
T ss_pred EEEECCEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCC----CCCEECCC--CCHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 479444238999998999999998578851478642103----76301375--888999999999999843875648889
Q ss_pred EEEECCCCEEEEEEECCCC
Q ss_conf 9997689839999747265
Q gi|254781179|r 248 FLFDPLSRKVFWLEINVQP 266 (300)
Q Consensus 248 f~~d~~~g~~~~lEvN~~P 266 (300)
|+++ ++.+|++||||+.
T Consensus 141 ~~~~--~~~~~viEiNpR~ 157 (160)
T pfam02655 141 LVLT--DNGPYVIEVNPRI 157 (160)
T ss_pred EEEE--CCEEEEEEEECCC
T ss_conf 9999--9908999996887
No 44
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.91 E-value=3.2e-22 Score=162.56 Aligned_cols=275 Identities=19% Similarity=0.180 Sum_probs=181.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHCCC--EEEEECC---------------C----CCHHHHHHHCCCCEEEECCCC
Q ss_conf 898367871278899999999999998798--8999615---------------8----656888875399899992548
Q gi|254781179|r 2 AVLMGGISSEREVSLSSGKACASALEDAGF--KVSQIDV---------------D----RSVGLVLAHLKPDLAFNVLHG 60 (300)
Q Consensus 2 ~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~--~v~~id~---------------~----~~~~~~l~~~~~D~vf~~lhG 60 (300)
.++-|+...|| +++++|.+... +++..-. + +.+.....+.++|+|+. |
T Consensus 7 VLviGsGGREH--------Aia~kl~~S~~v~~v~~aPGN~G~~~~~~~~~~~i~~~d~~~i~~fa~~~~idLvvv---G 75 (426)
T PRK13789 7 VLLIGSGGRES--------AIAFALRKSNLLSELKVFPGNGGFPDDELLPADSFSILDKSSVQSFLKSNPFDLIVV---G 75 (426)
T ss_pred EEEECCCHHHH--------HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE---C
T ss_conf 99989888999--------999999619898879998897611234545444338669999999999849999998---9
Q ss_pred CCC--CCCHHHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCHH--HHHCCCCEEEEECCCC
Q ss_conf 843--431023566643210023100233203650010000212100001213202220001--2210586256432477
Q gi|254781179|r 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGG 136 (300)
Q Consensus 61 ~~g--Edg~iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~~--~~~~~~P~ivKP~~gg 136 (300)
+-. .+| |...|+..|||..||+..++.|-..|..+|.+|+++||||++|..+++.+... .+..++|+|||+.--.
T Consensus 76 PE~PL~~G-i~D~l~~~gi~vfGP~k~aA~LE~SK~faK~fm~~~~IPTa~~~~f~~~~~A~~~l~~~~~P~VIKaDGLA 154 (426)
T PRK13789 76 PEDPLVAG-FADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEYSSSLSYLESEMLPIVIKADGLA 154 (426)
T ss_pred CCHHHHHH-HHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 66888631-79998416991689598995051269899999997299976015736899999999857998899678768
Q ss_pred CCCCEEEECCHHHHHHHHHHHCCC----CCCCCCCCCCCCCCCEEEEEECCCC-CCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 642114325989999988630036----6885422333578845788731444-42002202554333311000011222
Q gi|254781179|r 137 SSLGIIVIKKDQSIPLDLLQSSSW----NHGDQLLIEQYVDGIELTCGVMGDA-SLDVTEIAVPKSDFYSYELKYSSLNS 211 (300)
Q Consensus 137 sS~Gv~~v~~~~el~~~~~~~~~~----~~~~~vlVEefI~G~E~~v~Vl~~~-~~~~~ei~~~~~~~~dy~~Ky~~~~~ 211 (300)
+++||.++.+.+|...++...... ..+..++||||+.|.|+++.++.|+ .+-++.........||.+.--+++..
T Consensus 155 aGKGV~V~~~~~eA~~al~~i~~~~~fg~ag~~VvIEE~L~G~E~S~~a~~dG~~~~~lp~aQDhKR~~dgD~GPNTGGM 234 (426)
T PRK13789 155 AGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFMEGQEASIFAISDGDSYFLLPAAQDHKRAFDGDQGPNTGGM 234 (426)
T ss_pred CCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99966953999999999999754423303587599997458984479999729977868864444213379999999987
Q ss_pred CCCCCCC-CHHHHHHHHHH-HHH---HHHHHCC--CCCEEEEEEEEECCCCEEEEEEECCCCCCCHH-HHHHHHHHHCCC
Q ss_conf 2458652-11666554444-444---5775348--76457999999768983999974726588822-389999998399
Q gi|254781179|r 212 THVLPAK-IPLDIYKEVQR-LAF---LAHQAIG--CRGISRSDFLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGY 283 (300)
Q Consensus 212 ~~~~Pa~-l~~~~~~~i~~-~a~---~~~~alg--~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~-s~~p~~~~~~G~ 283 (300)
--+.|++ +++++.+++.+ +.. +..+.-| ++|+-=+.++++. +|+|++||-|.+-|=-.. ..+|++ .-
T Consensus 235 GaysP~p~~~~~~~~~i~~~ii~pt~~~l~~~g~~y~GvLy~GlMlt~-~G~pkVlEfN~RfGDPE~q~iLp~L----~~ 309 (426)
T PRK13789 235 GAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISP-EGEPKVVEFNCRFGDPETQCVLAML----DG 309 (426)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECC-CCCEEEEEEEEECCCCHHHHHHHHH----HC
T ss_conf 677778668999999999860489999998589998867653289926-9976999988531891688898874----15
Q ss_pred CHHHHHHHHH
Q ss_conf 9899999999
Q gi|254781179|r 284 SFRELLLWMV 293 (300)
Q Consensus 284 s~~~li~~ii 293 (300)
++-+++...+
T Consensus 310 dl~~~~~a~~ 319 (426)
T PRK13789 310 DLLELLYAAS 319 (426)
T ss_pred CHHHHHHHHH
T ss_conf 4999999997
No 45
>pfam01820 Dala_Dala_lig_N D-ala D-ala ligase N-terminus. This family represents the N-terminal region of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4 which is thought to be involved in substrate binding. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Probab=99.90 E-value=4.9e-24 Score=174.22 Aligned_cols=82 Identities=52% Similarity=0.802 Sum_probs=73.4
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH--------------------------HHHCCCCEE
Q ss_conf 289836787127889999999999999879889996158656888--------------------------875399899
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------------------LAHLKPDLA 54 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~--------------------------l~~~~~D~v 54 (300)
|+|||||.|+||+||+.||++|.++|.+.+|++..++++++..|. ....++|+|
T Consensus 3 vavl~GG~S~EheISl~Sa~~v~~~L~~~~~~v~~i~i~~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvv 82 (110)
T pfam01820 3 IAVLFGGRSSEHEVSLKSARAVLKALDKEGYEVIPIDIDKDGRWLLGDGDLGLLAPDDKLDLEDKAELLAVLLAEKVDVV 82 (110)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEECCCHHHHHCCCCCCCCCCCCCCCCHHHCCCCCEE
T ss_conf 99995568611388998899999999764975999987489878734640333213531001222222101112488999
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 9925488434310235666432100231
Q gi|254781179|r 55 FNVLHGNFGEDGLVQAILELLEIPYTHS 82 (300)
Q Consensus 55 f~~lhG~~gEdg~iq~~le~~~ipy~Gs 82 (300)
||++||.+||||+||++||++|||||||
T Consensus 83 F~~lHG~~GEDG~iQglle~~~iPytGs 110 (110)
T pfam01820 83 FPVLHGPFGEDGTIQGLLELLGIPYVGS 110 (110)
T ss_pred EEECCCCCCCCCHHHHHHHHCCCCCCCC
T ss_conf 9988898866578999999819998899
No 46
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.89 E-value=4.1e-21 Score=155.48 Aligned_cols=273 Identities=17% Similarity=0.154 Sum_probs=179.5
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHCC--CEEEEE-------------CCC----CCHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 9836787127889999999999999879--889996-------------158----656888875399899992548843
Q gi|254781179|r 3 VLMGGISSEREVSLSSGKACASALEDAG--FKVSQI-------------DVD----RSVGLVLAHLKPDLAFNVLHGNFG 63 (300)
Q Consensus 3 vl~GG~s~E~~iSl~S~~~i~~aL~~~g--~~v~~i-------------d~~----~~~~~~l~~~~~D~vf~~lhG~~g 63 (300)
++-|....|| +++++|.+.. .+++.. +++ +.+.....+.++|+|+. |+
T Consensus 4 LviGsGgREH--------Aia~kl~~s~~v~~v~~~PGN~G~~~~~~~~~i~~~d~~~l~~~a~~~~idlvii---GP-- 70 (424)
T PRK00885 4 LVIGSGGREH--------ALAWKLAQSPLVEKVYVAPGNAGTALEAENVAIDVTDIEALVAFAKEEGIDLTVV---GP-- 70 (424)
T ss_pred EEECCCHHHH--------HHHHHHHHCCCCCEEEEECCCHHHHHCCEEECCCCCCHHHHHHHHHHCCCCEEEE---CC--
T ss_conf 9988888999--------9999997397989899928975887417365128579999999999849999998---96--
Q ss_pred CCCH---HHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCHH--HHHCCCCEEEEECCCCCC
Q ss_conf 4310---23566643210023100233203650010000212100001213202220001--221058625643247764
Q gi|254781179|r 64 EDGL---VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSS 138 (300)
Q Consensus 64 Edg~---iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~~--~~~~~~P~ivKP~~ggsS 138 (300)
|.-- +...|+..|||..||+..++.+-..|..+|++|+++||||++|..+++.+... .+..++|+|||+.--.++
T Consensus 71 E~pL~~Gi~D~l~~~gi~vfGP~k~aA~lE~SK~faK~~m~~~~IPTa~~~~f~~~~~A~~~l~~~~~p~VIKaDGLAaG 150 (424)
T PRK00885 71 EAPLVAGIVDAFRAAGLKIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYEVFTDAEEAKAYLDEQGAPIVVKADGLAAG 150 (424)
T ss_pred CHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 67887357999950699468949789887663799999999829898754886899999999985799889961765677
Q ss_pred CCEEEECCHHHHHHHHHHHCCCC----CCCCCCCCCCCCCCEEEEEECCCC-CCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21143259899999886300366----885422333578845788731444-4200220255433331100001122224
Q gi|254781179|r 139 LGIIVIKKDQSIPLDLLQSSSWN----HGDQLLIEQYVDGIELTCGVMGDA-SLDVTEIAVPKSDFYSYELKYSSLNSTH 213 (300)
Q Consensus 139 ~Gv~~v~~~~el~~~~~~~~~~~----~~~~vlVEefI~G~E~~v~Vl~~~-~~~~~ei~~~~~~~~dy~~Ky~~~~~~~ 213 (300)
+||.++.+.+|...++....... .+..++||||+.|.|+++.++.|+ .+-+..........||.+.-.++++.--
T Consensus 151 KGV~V~~~~~ea~~al~~i~~~~~fg~ag~~VvIEE~L~G~E~S~~a~~DG~~~~~lp~aqDhKR~~dgD~GPNTGGMGa 230 (424)
T PRK00885 151 KGVVVAMTLEEAEAAVDDMLAGNKFGDAGARVVIEEFLDGEEASFFALVDGENVLPLPTAQDHKRAGDGDTGPNTGGMGA 230 (424)
T ss_pred CCEEEECCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 75176378999999999985033234568728999705883179999978997264702114750568999988998856
Q ss_pred CCCCC-CHHHHHHHHH-HHHHHHHHHC-----CCCCEEEEEEEEECCCCEEEEEEECCCCCCCH-HHHHHHHHHHCCCCH
Q ss_conf 58652-1166655444-4444577534-----87645799999976898399997472658882-238999999839998
Q gi|254781179|r 214 VLPAK-IPLDIYKEVQ-RLAFLAHQAI-----GCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSF 285 (300)
Q Consensus 214 ~~Pa~-l~~~~~~~i~-~~a~~~~~al-----g~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~-~s~~p~~~~~~G~s~ 285 (300)
+.|++ +++++.+++. ++.....++| .++|+-=+.++++. +| +++||-|.+-|=-. ...+|++ .-++
T Consensus 231 ~sP~p~~~~~~~~~i~~~Ii~pt~~~l~~eg~~y~GiLy~GlMit~-~G-pkVlEyN~RfGDPE~qvllp~L----~~dl 304 (424)
T PRK00885 231 YSPAPVVTEEVHDRVMEEIIEPTVKGMAAEGIPYTGVLYAGLMITK-DG-PKVIEFNCRFGDPETQVVLPRL----KSDL 304 (424)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEC-CC-CEEEEEECCCCCHHHHHHHHHC----CCCH
T ss_conf 6788679999999999987999999998579847999877999867-97-5589863134885888998752----3619
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254781179|r 286 RELLLWMVE 294 (300)
Q Consensus 286 ~~li~~ii~ 294 (300)
-+++...++
T Consensus 305 ~~l~~~~~~ 313 (424)
T PRK00885 305 VELLLAAAE 313 (424)
T ss_pred HHHHHHHHC
T ss_conf 999998753
No 47
>PRK06849 hypothetical protein; Provisional
Probab=99.89 E-value=2.5e-21 Score=156.88 Aligned_cols=235 Identities=14% Similarity=0.168 Sum_probs=166.7
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC----------------------------CHHHHHHHCCCCE
Q ss_conf 898367871278899999999999998798899961586----------------------------5688887539989
Q gi|254781179|r 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----------------------------SVGLVLAHLKPDL 53 (300)
Q Consensus 2 ~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~----------------------------~~~~~l~~~~~D~ 53 (300)
.+|.||+.+ -+.+++..|.+.||+|++.|..+ .+..+++++++|+
T Consensus 7 vLiTg~r~~-------~aL~laR~l~~~Gh~V~~aD~~~~~l~r~Sr~v~~~~~vP~P~~d~~~y~~~Ll~Iv~~e~idl 79 (387)
T PRK06849 7 VLITGARAP-------AALQLARSFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPKWDPNAYIQALLSIVKRHNIDL 79 (387)
T ss_pred EEEECCCHH-------HHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCE
T ss_conf 999588607-------8999999998789979998489877542000011279869997898999999999999838999
Q ss_pred EEECCCCCCCCCCHHHHHHHHH--HHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCHHH---HHCCCCE
Q ss_conf 9992548843431023566643--2100231002332036500100002121000012132022200012---2105862
Q gi|254781179|r 54 AFNVLHGNFGEDGLVQAILELL--EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPY 128 (300)
Q Consensus 54 vf~~lhG~~gEdg~iq~~le~~--~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~~~---~~~~~P~ 128 (300)
++|+.+.. -.+....+.+ ..++..++......-.||+.+-+++++.|+|+|+++.+++.+.... ...+.|+
T Consensus 80 ~IP~~eev----~~~a~~~~~l~~~~~~~~~d~~~l~~LhdK~~F~~~a~~lGl~vP~T~~i~s~edv~~~~~~~~~~~~ 155 (387)
T PRK06849 80 LIPTCEEV----FYLSLAKEELSAYCHVFHFDFDLLLMLHNKFEFIQQARSLGLSAPKTYLITDPEAIINFDFKTPHTPY 155 (387)
T ss_pred EEECCCHH----HHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHCCCCCCE
T ss_conf 99777689----99986576447676376589999998644899999999749999988981899999865533668978
Q ss_pred EEEECCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEE-EECCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 564324776421143259899999886300366885422333578845788-7314444200220255433331100001
Q gi|254781179|r 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDASLDVTEIAVPKSDFYSYELKYS 207 (300)
Q Consensus 129 ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~~~~~~~~vlVEefI~G~E~~v-~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~ 207 (300)
|+||+.+.++.++....+.+.++. .....+.++++||||+|.|+.. ++..++.+-..-. |+..|.
T Consensus 156 ilKPv~~~~~~~v~~~~~~~~l~~-----l~~s~~~p~v~Qe~I~G~~~ct~al~~~Gkv~A~~~---------y~~~~~ 221 (387)
T PRK06849 156 VLKPIYSRFVRRVDLTKTKAAVLK-----LPISHKSPWIMQEFIPGQEYCSYSIVRSGELRAHSC---------YKPEFT 221 (387)
T ss_pred EECCCCCCCCCEEEECCCHHHHHC-----CCCCCCCCEEEEEECCCCEEEEEEEEECCEEEEEEE---------EECCEE
T ss_conf 982376665333652159778615-----887667982899871696758999978999999998---------204220
Q ss_pred C--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCC
Q ss_conf 1--22224586521166655444444457753487645799999976898399997472658
Q gi|254781179|r 208 S--LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 (300)
Q Consensus 208 ~--~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PG 267 (300)
. +.+.+..+.. ..++++.+.+..+.+++.|..-+||+.|+ ||++|.||+||+..
T Consensus 222 ~~~g~~v~fe~v~-----~p~i~e~v~~f~~~~~~tG~isFDFI~~~-dG~~~~IECNPR~t 277 (387)
T PRK06849 222 AGLGAQIAFQPIN-----NPRIEEFVTHFVKELNYTGQISFDFIQTE-NGDAYPIECNPRTT 277 (387)
T ss_pred CCCCEEEEEEECC-----CHHHHHHHHHHHHHCCCEEEEEEEEEECC-CCCEEEEEECCCCC
T ss_conf 5884057889758-----88999999999984785158999999989-99889998459866
No 48
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.88 E-value=3.6e-21 Score=155.85 Aligned_cols=260 Identities=15% Similarity=0.118 Sum_probs=175.3
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHCCC--EEEEEC--------------CC----CCHHHHHHHCCCCEEEECCCCCC
Q ss_conf 98367871278899999999999998798--899961--------------58----65688887539989999254884
Q gi|254781179|r 3 VLMGGISSEREVSLSSGKACASALEDAGF--KVSQID--------------VD----RSVGLVLAHLKPDLAFNVLHGNF 62 (300)
Q Consensus 3 vl~GG~s~E~~iSl~S~~~i~~aL~~~g~--~v~~id--------------~~----~~~~~~l~~~~~D~vf~~lhG~~ 62 (300)
++-|+...|| +++++|.+... +++..- ++ +.+.....+.++|+|+. |+-
T Consensus 4 LviGsGgREH--------Ala~~l~~s~~v~~v~~aPGN~g~~~~a~~~~~i~~~d~~~i~~~a~~~~iDLvvv---GPE 72 (415)
T PRK13790 4 LVIGAGGREH--------ALAYKLNQSNLVKQVFVIPGNEAMTPIAEVHTEISESDHQAILDFAKQQNVDWVVI---GPE 72 (415)
T ss_pred EEECCCHHHH--------HHHHHHHHCCCCCEEEEECCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEE---CCC
T ss_conf 9988788999--------99999962989898999789557652230246768558999999999819999998---960
Q ss_pred C--CCCHHHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCH--HHHHCCCCEEEEECCCCCC
Q ss_conf 3--43102356664321002310023320365001000021210000121320222000--1221058625643247764
Q gi|254781179|r 63 G--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSS 138 (300)
Q Consensus 63 g--Edg~iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~--~~~~~~~P~ivKP~~ggsS 138 (300)
. .+| +...|+..|||..||+..++.|...|..+|.+|+++||||++|..+++.+.. ..+..++|+|||+.--.++
T Consensus 73 ~PL~~G-ivD~l~~~gi~vfGP~k~aA~LE~SK~faK~~m~~~~IPTa~~~~f~~~~~A~~~l~~~~~p~VIKaDGLAaG 151 (415)
T PRK13790 73 QPLIDG-LADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERKKDALTYIENCELPVVVKKDGLAAG 151 (415)
T ss_pred HHHHHH-HHHHHHCCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 786634-8888643897598949799515126999999999829797772550879999999861799889966866789
Q ss_pred CCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCC-CEEEECCCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 2114325989999988630036688542233357884578873144442-0022025543-3331100001122224586
Q gi|254781179|r 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL-DVTEIAVPKS-DFYSYELKYSSLNSTHVLP 216 (300)
Q Consensus 139 ~Gv~~v~~~~el~~~~~~~~~~~~~~~vlVEefI~G~E~~v~Vl~~~~~-~~~ei~~~~~-~~~dy~~Ky~~~~~~~~~P 216 (300)
+||.++++.+|...++...........++||||+.|.|+++..+.|+.. -+......++ ..||.+.--+++..--+.|
T Consensus 152 KGV~V~~~~~eA~~al~~i~~~~~~g~VvIEE~L~G~E~S~~a~~DG~~~~p~~~~aQDhKR~~dgD~GPNTGGMGaysp 231 (415)
T PRK13790 152 KGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLEGEEFSLMTFVNGDLAVPFDCIAQDHKRAFDHDEGPNTGGMGAYCP 231 (415)
T ss_pred CCEEEECCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 95699799999999999985555476599987157863489999739979957754321202468999999998756677
Q ss_pred CC-CHHHHHHHHH----HHHHHHHHHCC--CCCEEEEEEEEECCCCEEEEEEECCCCCCCH-HHHHHH
Q ss_conf 52-1166655444----44445775348--7645799999976898399997472658882-238999
Q gi|254781179|r 217 AK-IPLDIYKEVQ----RLAFLAHQAIG--CRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPE 276 (300)
Q Consensus 217 a~-l~~~~~~~i~----~~a~~~~~alg--~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~-~s~~p~ 276 (300)
++ +++++.+++. +-..+..+.-| ++|+-=+.++++. +| +++||-|.+.|=-. ...+|+
T Consensus 232 ~p~~~~~~~~~~~~~I~~p~~~~l~~eg~~y~GvLy~GlMlt~-~G-pkVlEyN~RfGDPE~q~iLp~ 297 (415)
T PRK13790 232 VPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTK-DG-PKVIEFNARFGDPEAQVLLSR 297 (415)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEC-CC-CEEEEEEEECCCCHHHHHHHH
T ss_conf 7446989999999870899999998559984899887799868-98-669998741189228889876
No 49
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=6.1e-21 Score=154.35 Aligned_cols=266 Identities=17% Similarity=0.233 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCC-----HHHH-----------------------HHHCCCCEEEECCCCCCCC
Q ss_conf 88999999999999987988999615865-----6888-----------------------8753998999925488434
Q gi|254781179|r 13 EVSLSSGKACASALEDAGFKVSQIDVDRS-----VGLV-----------------------LAHLKPDLAFNVLHGNFGE 64 (300)
Q Consensus 13 ~iSl~S~~~i~~aL~~~g~~v~~id~~~~-----~~~~-----------------------l~~~~~D~vf~~lhG~~gE 64 (300)
++-..|.-+...+.++.||++..++.... .... ......|++|.-.-... .
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i~~R~~~~~-~ 91 (318)
T COG0189 13 DIYKDTTFALMEAAQKRGHELAILDDGDLSLRKGEIKALARLVEVGEVIGLHYELIEEEDLSLLDELDVIIMRKDPPF-D 91 (318)
T ss_pred CCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCEEEECCCCHH-H
T ss_conf 765543999988778607348997165311451336888866532210010124333100222036728997378604-5
Q ss_pred CC-HHHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCC---HHHHHCCCCEEEEECCCCCCCC
Q ss_conf 31-0235666432100231002332036500100002121000012132022200---0122105862564324776421
Q gi|254781179|r 65 DG-LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLISPPYVIKPLKGGSSLG 140 (300)
Q Consensus 65 dg-~iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~---~~~~~~~~P~ivKP~~ggsS~G 140 (300)
.+ .+-..+|..|++.+ .++.+...|.||..+-+++...|+|+|++.+..+.+. ..++.++||+|+||..|..|.|
T Consensus 92 ~~~~~~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~l~~~~ipvP~T~i~~~~~~~~~~~~~~~g~pvVlKp~~Gs~G~g 170 (318)
T COG0189 92 FATRFLRLAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPTLITRDPDEAAEFVAEHLGFPVVLKPLDGSGGRG 170 (318)
T ss_pred HHHHHHHHHHHCCCEEE-CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 68999999987498687-88799876355799999999659999986896584788999997468988996478888665
Q ss_pred EEEECCHH-HHHHHHHHHCCCCCCCCCCCCCCCC--CCEEEEEECCCCCC-C--EEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 14325989-9999886300366885422333578--84578873144442-0--02202554333311000011222245
Q gi|254781179|r 141 IIVIKKDQ-SIPLDLLQSSSWNHGDQLLIEQYVD--GIELTCGVMGDASL-D--VTEIAVPKSDFYSYELKYSSLNSTHV 214 (300)
Q Consensus 141 v~~v~~~~-el~~~~~~~~~~~~~~~vlVEefI~--G~E~~v~Vl~~~~~-~--~~ei~~~~~~~~dy~~Ky~~~~~~~~ 214 (300)
|+++++.+ ++....+.... .....+|+||||+ ++++-.-+++++.. + .+.....+++| +..+..+....
T Consensus 171 V~~v~~~d~~l~~~~e~~~~-~~~~~~ivQeyi~~~~~~~rrivv~~~~~~~~y~~~R~~~~~~~---R~N~a~Gg~~e- 245 (318)
T COG0189 171 VFLVEDADPELLSLLETLTQ-EGRKLIIVQEYIPKAKRDDRRVLVGGGEVVAIYALARIPASGDF---RSNLARGGRAE- 245 (318)
T ss_pred EEEECCCCHHHHHHHHHHHC-CCCCEEEEECCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCC---EEECCCCCEEC-
T ss_conf 59943776569999998634-55642986203476778739999989999898712004777752---01011575204-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 86521166655444444457753487645799999976898399997472658882238999999839998999999999
Q gi|254781179|r 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 (300)
Q Consensus 215 ~Pa~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~~ii~ 294 (300)
|.+++ .+++++|.++.++||. +++.||++.+ ++.+|++|||..|+.- ..+-+..|.+-.+++...++
T Consensus 246 -~~~l~----~e~~elA~kaa~~lGl-~~~GVDiie~--~~g~~V~EVN~sP~~~-----~~i~~~~g~~~~~~~~~~ie 312 (318)
T COG0189 246 -PCELT----EEEEELAVKAAPALGL-GLVGVDIIED--KDGLYVTEVNVSPTGK-----GEIERVTGVNIAGLIIDAIE 312 (318)
T ss_pred -CCCCC----HHHHHHHHHHHHHHCC-CEEEEEEEEE--CCCEEEEEEECCCCCC-----CCHHHCCCCCHHHHHHHHHH
T ss_conf -53699----9999999999997489-4799999970--8962999986896523-----52143069767999999999
Q ss_pred HHHC
Q ss_conf 7511
Q gi|254781179|r 295 DASC 298 (300)
Q Consensus 295 ~A~~ 298 (300)
....
T Consensus 313 ~~~~ 316 (318)
T COG0189 313 KFVR 316 (318)
T ss_pred HHHH
T ss_conf 9974
No 50
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=99.88 E-value=3.8e-21 Score=155.71 Aligned_cols=239 Identities=22% Similarity=0.287 Sum_probs=173.2
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH----------------HH--CCCCEEEECCCCCC
Q ss_conf 2898367871278899999999999998798899961586568888----------------75--39989999254884
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL----------------AH--LKPDLAFNVLHGNF 62 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l----------------~~--~~~D~vf~~lhG~~ 62 (300)
|+||-||. | |+.++.+-..+|+++..+|++.+....- .+ .+.|++=--.
T Consensus 4 vgIlGGGQ-------L--grMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~Ef---- 70 (375)
T COG0026 4 VGILGGGQ-------L--GRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEF---- 70 (375)
T ss_pred EEEECCCH-------H--HHHHHHHHHHCCCEEEEECCCCCCCHHHCCCCEEECCCCCHHHHHHHHHHCCEEEEEE----
T ss_conf 99976869-------9--9999999986497799956999996334143154157788899999986298899851----
Q ss_pred CCCCH---HHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCHH--HHHCCCCEEEEECCCC-
Q ss_conf 34310---23566643210023100233203650010000212100001213202220001--2210586256432477-
Q gi|254781179|r 63 GEDGL---VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGG- 136 (300)
Q Consensus 63 gEdg~---iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~~--~~~~~~P~ivKP~~gg- 136 (300)
|+=- +..+... + .+-+++.+..+.+||+..|++|+++|+|||+|..+++.+... ...+++|.|+|-+.+|
T Consensus 71 -E~V~~~aL~~l~~~--~-~v~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~~~el~~~~~~~g~p~VlKtr~gGY 146 (375)
T COG0026 71 -ENVPAEALEKLAAS--V-KVFPSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSAEELDAAAADLGFPAVLKTRRGGY 146 (375)
T ss_pred -CCCCHHHHHHHHHH--C-CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf -46988999999961--6-7699989988776689999999976999998278579889999999759956998322656
Q ss_pred CCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CEEEEEECC--CC---CCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 64211432598999998863003668854223335788-457887314--44---4200220255433331100001122
Q gi|254781179|r 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMG--DA---SLDVTEIAVPKSDFYSYELKYSSLN 210 (300)
Q Consensus 137 sS~Gv~~v~~~~el~~~~~~~~~~~~~~~vlVEefI~G-~E~~v~Vl~--~~---~~~~~ei~~~~~~~~dy~~Ky~~~~ 210 (300)
.++|..++++.+++........ .. ...++|+|++- +|++|-+.. ++ .+|+.|- ...++++
T Consensus 147 DGkGQ~~i~~~~~~~~~~~~~~--~~-~~~vlE~fV~F~~EiSvi~aR~~~G~~~~yP~~eN-~h~~gIl---------- 212 (375)
T COG0026 147 DGKGQWRIRSDADLELRAAGLA--EG-GVPVLEEFVPFEREISVIVARSNDGEVAFYPVAEN-VHRNGIL---------- 212 (375)
T ss_pred CCCCEEEEECCCCCHHHHHHHH--CC-CCEEEEEECCCCEEEEEEEEECCCCCEEEECCCCE-EEECCEE----------
T ss_conf 6887089407010235676651--36-86368860356648999999858997898066210-1336789----------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHH
Q ss_conf 2245865211666554444444577534876457999999768983999974726588822
Q gi|254781179|r 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 (300)
Q Consensus 211 ~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~ 271 (300)
...+.|+++++++.++.+++|.++.+.|++.|.-.|+||+.. +|+++++|+-|+|.-|-|
T Consensus 213 ~~siaPa~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~-dg~llvNEiAPRvHNSGH 272 (375)
T COG0026 213 RTSIAPARIPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTP-DGELLVNEIAPRVHNSGH 272 (375)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEC-CCCEEEEECCCCCCCCCC
T ss_conf 999723768989999999999999997594578999999978-984898613689878665
No 51
>KOG0369 consensus
Probab=99.87 E-value=6e-21 Score=154.39 Aligned_cols=263 Identities=16% Similarity=0.234 Sum_probs=190.7
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCH------------------------------HHHHHHCCCCEEEECCCCCCCCCCHH
Q ss_conf 999999999879889996158656------------------------------88887539989999254884343102
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSV------------------------------GLVLAHLKPDLAFNVLHGNFGEDGLV 68 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~------------------------------~~~l~~~~~D~vf~~lhG~~gEdg~i 68 (300)
+-.|..++.+++.+++.++..++- ...-++.+.|.|-|- .|...|...+
T Consensus 45 aIRvFRa~tEL~~~tvAiYseqD~~sMHRqKADEaY~iGk~l~PV~AYL~ideii~iak~~~vdavHPG-YGFLSErsdF 123 (1176)
T KOG0369 45 AIRVFRAATELSMRTVAIYSEQDRLSMHRQKADEAYLIGKGLPPVGAYLAIDEIISIAKKHNVDAVHPG-YGFLSERSDF 123 (1176)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCHHHHHHHCCCHHEECCCCCCCHHHHHCHHHHHHHHHHCCCCEECCC-CCCCCCCHHH
T ss_conf 047887777625447999731111246563043012326777826765147999999987288732577-4212212489
Q ss_pred HHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEEC----CCCCHHHHHCCCCEEEEECCCCCCCCEEEE
Q ss_conf 3566643210023100233203650010000212100001213202----220001221058625643247764211432
Q gi|254781179|r 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 (300)
Q Consensus 69 q~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~----~~~~~~~~~~~~P~ivKP~~ggsS~Gv~~v 144 (300)
..-+...||-|+|++++...---||..++.++-.+|+|+.|..--. ....+..+..|+|+|+|.+.||++.|+.+|
T Consensus 124 A~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~yG~PvI~KAAyGGGGRGmRvV 203 (1176)
T KOG0369 124 AQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEYGLPVIIKAAYGGGGRGMRVV 203 (1176)
T ss_pred HHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEE
T ss_conf 99998659669688979998842088888999971997158999975429999999986198389961016897643775
Q ss_pred CCHHHHHHHHHHH----CCCCCCCCCCCCCCCC-CCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 5989999988630----0366885422333578-845788731444420022025543333110000112222458652-
Q gi|254781179|r 145 KKDQSIPLDLLQS----SSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218 (300)
Q Consensus 145 ~~~~el~~~~~~~----~~~~~~~~vlVEefI~-G~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~- 218 (300)
++.+++++++... .+.--+..+.||+|++ .+.++|.+++|..-.++.....+..+ +.+ .....++.||.
T Consensus 204 r~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHIEvQllgD~~GNvvHLyERDCSv---QRR--HQKVVEiAPA~~ 278 (1176)
T KOG0369 204 RSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQLLGDKHGNVVHLYERDCSV---QRR--HQKVVEIAPAKT 278 (1176)
T ss_pred ECHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCEEEEEEECCCCCCEEEEEECCCCH---HHH--HCCEEEECCCCC
T ss_conf 025569999998889999861786153786625865268987213568789876145516---432--010367345565
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCC--------CCHHHHHHHHHH-HCCCCHHHH
Q ss_conf 1166655444444457753487645799999976898399997472658--------882238999999-839998999
Q gi|254781179|r 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG--------MTPVSIFPEMAA-YAGYSFREL 288 (300)
Q Consensus 219 l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PG--------lt~~s~~p~~~~-~~G~s~~~l 288 (300)
|+++++++|...|.|+++.+|++..+.++|.+|. .|..|||||||.=- +|-..++-.+.+ +.|.+.+||
T Consensus 279 Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~-~g~hYFIEvN~RlQVEHTvTEEITgvDlV~aQi~vAeG~tLp~l 356 (1176)
T KOG0369 279 LPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQ-KGRHYFIEVNPRLQVEHTVTEEITGVDLVQAQIHVAEGASLPDL 356 (1176)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC-CCCEEEEEECCCEEEEEEEEEEECCCCHHHHHHHHHCCCCCCCC
T ss_conf 9989999999999999998475657707887716-79789999546435665523100452010111134317875323
No 52
>TIGR00877 purD phosphoribosylamine--glycine ligase; InterPro: IPR000115 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) catalyzes the second step in the de novo biosynthesis of purine: ATP + 5-phosphoribosylamine + glycine = ADP + P_i + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART.; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process.
Probab=99.87 E-value=2.2e-20 Score=150.85 Aligned_cols=279 Identities=18% Similarity=0.182 Sum_probs=181.7
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE--------------------CCC------CCHHHHHHHCCCCEEEE
Q ss_conf 9836787127889999999999999879889996--------------------158------65688887539989999
Q gi|254781179|r 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQI--------------------DVD------RSVGLVLAHLKPDLAFN 56 (300)
Q Consensus 3 vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~i--------------------d~~------~~~~~~l~~~~~D~vf~ 56 (300)
++=|+...|| +++++|.+... |..+ +.+ +.+...-.+.++|++++
T Consensus 4 LviG~GGREH--------Ala~~l~qs~~-v~~~~~apGN~Gta~~~~~~~~~~~~~~~~~d~~~~~~FA~~~~idL~~i 74 (459)
T TIGR00877 4 LVIGNGGREH--------ALAWKLAQSPL-VKYVYVAPGNAGTARLAKNKNVAIEITKDVRDIEALVEFAKKKKIDLAVI 74 (459)
T ss_pred EEECCCHHHH--------HHHHHHHCCCC-CCEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9974870589--------99998732711-33667826898622012544411457866300899999998469754880
Q ss_pred CCCCCCC--CCCHHHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEE-CCCEEEECCCCCHH--HHHCCCC--EE
Q ss_conf 2548843--4310235666432100231002332036500100002121000-01213202220001--2210586--25
Q gi|254781179|r 57 VLHGNFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP-VCPSILVNRFTMDS--QHLISPP--YV 129 (300)
Q Consensus 57 ~lhG~~g--Edg~iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIp-tp~~~~~~~~~~~~--~~~~~~P--~i 129 (300)
|+=- ..| |-..||..|||.+||+-.|+.|--+|..||++|+++||| |+.|..+++.+... ....+.| +|
T Consensus 75 ---GPE~PL~~G-~vd~le~~Gi~~FGP~k~AA~LE~SK~FaK~fm~~~gIPGta~Y~~Ft~~eea~~y~~~~g~PA~~V 150 (459)
T TIGR00877 75 ---GPEAPLVLG-LVDALEEAGIPVFGPTKEAAQLEASKAFAKDFMKRYGIPGTAEYEVFTDPEEAKSYIQEKGAPAEIV 150 (459)
T ss_pred ---CCCCCHHHH-HHHHHHHCCCCEECCCHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCCCEE
T ss_conf ---874101201-4778986795145688788643328789999999648983222100089899999998418897489
Q ss_pred EEECCCCCCCCEEEE----CCHHHHHHHHHHHCCCC----CCCCCCCCCCCCCCEEEEEECCC-CCCCEEEECCCCCCCC
Q ss_conf 643247764211432----59899999886300366----88542233357884578873144-4420022025543333
Q gi|254781179|r 130 IKPLKGGSSLGIIVI----KKDQSIPLDLLQSSSWN----HGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFY 200 (300)
Q Consensus 130 vKP~~ggsS~Gv~~v----~~~~el~~~~~~~~~~~----~~~~vlVEefI~G~E~~v~Vl~~-~~~~~~ei~~~~~~~~ 200 (300)
|||.--.+++||.++ .+.+|..+++......+ -+.+|+||||++|.|+|+.++-| ..+-++-..-..-..|
T Consensus 151 VKadGLAAGKGV~V~Ge~L~~~eEA~~~~~~~~~~~~FG~a~~~VVIEEfL~G~E~S~~~~~DG~~v~Plp~aQDhKR~~ 230 (459)
T TIGR00877 151 VKADGLAAGKGVIVAGEQLKTNEEAIKAVEEILEQKAFGEAGERVVIEEFLEGEEVSLLAFVDGKTVIPLPPAQDHKRAL 230 (459)
T ss_pred EECCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEECCCEEEECCCCCCCCCCC
T ss_conf 80566657986268476027478999999999854765666882589642488008999997486677054215765046
Q ss_pred CCCC-CCCCCCCCCCCCCC----CHHHHHHHHHH-HHHHHHHHCC-----CCCEEEEEEEEECCCCE---EEEEEECCCC
Q ss_conf 1100-00112222458652----11666554444-4445775348-----76457999999768983---9999747265
Q gi|254781179|r 201 SYEL-KYSSLNSTHVLPAK----IPLDIYKEVQR-LAFLAHQAIG-----CRGISRSDFLFDPLSRK---VFWLEINVQP 266 (300)
Q Consensus 201 dy~~-Ky~~~~~~~~~Pa~----l~~~~~~~i~~-~a~~~~~alg-----~~g~~rvDf~~d~~~g~---~~~lEvN~~P 266 (300)
|=|. -=++|..--+.|++ +++++.+++.+ +.+.+.++|. ++|+==-.|++++ +|+ |.+||-|.+=
T Consensus 231 egD~~GpNTGGMGAYsP~phlL~~~~e~~~~~~~~I~~pt~~~l~~eG~~y~GvLYaglMl~~-~G~~L~PkVlEfN~RF 309 (459)
T TIGR00877 231 EGDKKGPNTGGMGAYSPAPHLLVFTEEVEKRIAEEIVEPTVKALRKEGTPYKGVLYAGLMLTK-EGGVLVPKVLEFNVRF 309 (459)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEC-CCCEEEEEEEEECCCC
T ss_conf 688878855786330278784423717899998777899999998528972478741389976-8988644788970527
Q ss_pred CCCH-HHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 8882-238999999839998999999999751
Q gi|254781179|r 267 GMTP-VSIFPEMAAYAGYSFRELLLWMVEDAS 297 (300)
Q Consensus 267 Glt~-~s~~p~~~~~~G~s~~~li~~ii~~A~ 297 (300)
|==. .-.+|.+- ---|+.+++..+++.-+
T Consensus 310 GDPEtq~vL~lL~--dqsdL~e~~~a~~eg~L 339 (459)
T TIGR00877 310 GDPETQAVLPLLK--DQSDLLEVCLAAVEGKL 339 (459)
T ss_pred CCHHHHHHHHHHC--CCCCHHHHHHHHHCCCC
T ss_conf 8853444645423--88888999999845666
No 53
>TIGR02068 cya_phycin_syn cyanophycin synthetase; InterPro: IPR011810 Cyanophycin is an insoluble storage polymer for carbon, nitrogen, and energy, found in most Cyanobacteria. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. The polymer is made by this enzyme, cyanophycin synthetase, and degraded by cyanophycinase. Heterologously expressed cyanophycin synthetase in Escherichia coli produces a closely related, water-soluble polymer with some Arg replaced by Lys. It is unclear whether enzymes that produce soluble cyanophycin-like polymers in vivo in non-Cyanobacterial species should be designated as cyanophycin synthetase itself or as a related enzyme. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions .; GO: 0005524 ATP binding, 0016874 ligase activity, 0009059 macromolecule biosynthetic process.
Probab=99.85 E-value=1.5e-21 Score=158.18 Aligned_cols=185 Identities=22% Similarity=0.308 Sum_probs=133.2
Q ss_pred CCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCC--CHHHHHCC-CCEEEEECCCCCCCCEEE-ECCHHHHHHHHHHH
Q ss_conf 100233203650010000212100001213202220--00122105-862564324776421143-25989999988630
Q gi|254781179|r 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLIS-PPYVIKPLKGGSSLGIIV-IKKDQSIPLDLLQS 157 (300)
Q Consensus 82 s~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~--~~~~~~~~-~P~ivKP~~ggsS~Gv~~-v~~~~el~~~~~~~ 157 (300)
++..+-.++.||.+||++|+.+|+|+|....+...+ +...+.+| ||+||||.+|.-++||.+ +.+++|.+.|+...
T Consensus 208 Ts~iav~iA~DK~lTK~iL~~~GvPVP~G~~~~~~~~a~~aa~~~GG~PvViKP~DGn~GrGv~~ni~~r~e~e~AY~~A 287 (876)
T TIGR02068 208 TSAIAVEIACDKDLTKKILKAAGVPVPEGTVVQSAEEAWEAAEDLGGYPVVIKPYDGNHGRGVTINIETRDEIESAYEAA 287 (876)
T ss_pred CCEEEHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 65010122236378999998478988887366778999999997189968995177998743784077748899999999
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEE----------------EEC------CCCCC----------CCCCCCC
Q ss_conf 036688542233357884578873144442002----------------202------55433----------3311000
Q gi|254781179|r 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT----------------EIA------VPKSD----------FYSYELK 205 (300)
Q Consensus 158 ~~~~~~~~vlVEefI~G~E~~v~Vl~~~~~~~~----------------ei~------~~~~~----------~~dy~~K 205 (300)
...+....+|||+||.|+|+.+-|++++.+.+. |+. -|..+ -+|--++
T Consensus 288 ~~~Sk~~~ViVEr~i~G~dhRlLVVg~k~VAvA~R~PA~ViGDG~hTi~eLiG~~~N~DP~RG~Gh~~~Ltki~~D~~~~ 367 (876)
T TIGR02068 288 KEESKTSEVIVERYIKGRDHRLLVVGGKLVAVAERVPAHVIGDGVHTIEELIGEQINKDPLRGDGHDKPLTKIRLDSVAK 367 (876)
T ss_pred HHCCCCCEEEEEEEECCCCEEEEEECCEEEEEECCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHH
T ss_conf 86078660689876427623899998968998618888688387200766405764677788886677888343307999
Q ss_pred -------CCC------CCCCCC-CCCC---------CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-------CCC
Q ss_conf -------011------222245-8652---------1166655444444457753487645799999976-------898
Q gi|254781179|r 206 -------YSS------LNSTHV-LPAK---------IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP-------LSR 255 (300)
Q Consensus 206 -------y~~------~~~~~~-~Pa~---------l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~-------~~g 255 (300)
|.- |...++ -.|. .+++++-+...+|.++++..|+ |.+.||+..++ .+|
T Consensus 368 ~~L~kqG~~ldsVp~kG~~V~Lr~~ANLSTGG~A~DrTDeiHP~~~~~a~~aAk~iGL-DiaG~D~v~~di~~PL~~~~G 446 (876)
T TIGR02068 368 LVLAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEIHPENIAIAVRAAKIIGL-DIAGVDVVTEDISKPLRDTDG 446 (876)
T ss_pred HHHHHCCCCCCCHHHCCCEEEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHEEEE-EECCEEECCCCCCCCHHHCCC
T ss_conf 9998549751154540978886324774458731622575384589999875200000-121222003100037454597
Q ss_pred EEEEEEECCCCCCC
Q ss_conf 39999747265888
Q gi|254781179|r 256 KVFWLEINVQPGMT 269 (300)
Q Consensus 256 ~~~~lEvN~~PGlt 269 (300)
-++|||.-|||-
T Consensus 447 --~iVEVNAaPGlr 458 (876)
T TIGR02068 447 --AIVEVNAAPGLR 458 (876)
T ss_pred --EEEEEECCCCHH
T ss_conf --299985676634
No 54
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=99.85 E-value=3.4e-19 Score=143.16 Aligned_cols=252 Identities=17% Similarity=0.194 Sum_probs=164.5
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHCCCE--EEEE---------------CCC---CCHHHHHHHCCCCEEEECCCCC
Q ss_conf 8983678712788999999999999987988--9996---------------158---6568888753998999925488
Q gi|254781179|r 2 AVLMGGISSEREVSLSSGKACASALEDAGFK--VSQI---------------DVD---RSVGLVLAHLKPDLAFNVLHGN 61 (300)
Q Consensus 2 ~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~--v~~i---------------d~~---~~~~~~l~~~~~D~vf~~lhG~ 61 (300)
.+|-|....||- ++++|.+.+.- ++.- ..+ +.+...-.+.++|++|. |+
T Consensus 3 VLviGsGGREHA--------iA~kla~s~~v~~~~~apgN~G~a~~~~~~~~~~~~~~~~lv~fA~~~~idl~vV---GP 71 (428)
T COG0151 3 VLVIGSGGREHA--------LAWKLAQSPLVLYVYVAPGNPGTALEAYLVNIEIDTDHEALVAFAKEKNVDLVVV---GP 71 (428)
T ss_pred EEEECCCCHHHH--------HHHHHHCCCCEEEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEE---CC
T ss_conf 999868816999--------9999840876249999379974211344336765558899999999739998998---97
Q ss_pred CC--CCCHHHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCH--HHHHCCCCEEEEECCCCC
Q ss_conf 43--43102356664321002310023320365001000021210000121320222000--122105862564324776
Q gi|254781179|r 62 FG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGS 137 (300)
Q Consensus 62 ~g--Edg~iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~--~~~~~~~P~ivKP~~ggs 137 (300)
-. ..| |...|+..|||..||+-.++.+-.+|..+|.+|+++||||+.|..+++.+.. .....+.|++|||.-..+
T Consensus 72 E~pL~~G-vvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y~~f~~~e~a~ayi~~~g~piVVKadGLaa 150 (428)
T COG0151 72 EAPLVAG-VVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEYEVFTDPEEAKAYIDEKGAPIVVKADGLAA 150 (428)
T ss_pred CHHHHHH-HHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 1787644-689998779962386788988775399999999981999641110089899999999729988993454467
Q ss_pred CCCEEEECCHHHHHHHHHHHCC---CCC-CCCCCCCCCCCCCEEEEEECCCC-CCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 4211432598999998863003---668-85422333578845788731444-420022025543333110000112222
Q gi|254781179|r 138 SLGIIVIKKDQSIPLDLLQSSS---WNH-GDQLLIEQYVDGIELTCGVMGDA-SLDVTEIAVPKSDFYSYELKYSSLNST 212 (300)
Q Consensus 138 S~Gv~~v~~~~el~~~~~~~~~---~~~-~~~vlVEefI~G~E~~v~Vl~~~-~~~~~ei~~~~~~~~dy~~Ky~~~~~~ 212 (300)
++||.++.+.++...++..... +.. ..+|+||||++|.|+++.++-|+ .+-++.........||-+.-=+++..-
T Consensus 151 GKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~VVIEEfL~GeE~S~~a~~DG~~v~p~p~aQDhKra~dgD~GPNTGGMG 230 (428)
T COG0151 151 GKGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEFLDGEEFSLQAFVDGKTVIPMPTAQDHKRAYDGDTGPNTGGMG 230 (428)
T ss_pred CCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 89859827799999999999740001478874899853346179999997698678785314564334899899888877
Q ss_pred CCCCCC-CHHHHHHHHH-HHHHHHHHHC---C--CCCEEEEEEEEECCCCEEEEEEECCCCC
Q ss_conf 458652-1166655444-4444577534---8--7645799999976898399997472658
Q gi|254781179|r 213 HVLPAK-IPLDIYKEVQ-RLAFLAHQAI---G--CRGISRSDFLFDPLSRKVFWLEINVQPG 267 (300)
Q Consensus 213 ~~~Pa~-l~~~~~~~i~-~~a~~~~~al---g--~~g~~rvDf~~d~~~g~~~~lEvN~~PG 267 (300)
-+.|++ +++++.+++. ++.....+.+ | .+|+-=.-|++++ +| |++||-|.+=|
T Consensus 231 aysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~-~G-PkViEfN~RFG 290 (428)
T COG0151 231 AYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTA-DG-PKVIEFNARFG 290 (428)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECC-CC-CEEEEEECCCC
T ss_conf 77798879989999999999999999999718981478876789828-99-67999856668
No 55
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=99.84 E-value=1.1e-19 Score=146.42 Aligned_cols=274 Identities=16% Similarity=0.126 Sum_probs=171.7
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC--------------------CCHHHHHHHCCCCEEEECCCCC
Q ss_conf 89836787127889999999999999879889996158--------------------6568888753998999925488
Q gi|254781179|r 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------RSVGLVLAHLKPDLAFNVLHGN 61 (300)
Q Consensus 2 ~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~--------------------~~~~~~l~~~~~D~vf~~lhG~ 61 (300)
.++-|....|| +++++|.+....+..+... +.+.....+.++|+|+. |+
T Consensus 5 VLViGsGGREH--------Ala~kl~~s~~~~~~~~g~gn~g~~~~~~~~~~~~~~d~~~i~~~a~~~~idLvvv---GP 73 (435)
T PRK06395 5 VMLVGSGGRED--------AIARAIKRSGAILFSVIGHENPSIKKLSKKYLFYDEKDYDLIEDFALKNNVDIVFV---GP 73 (435)
T ss_pred EEEECCCHHHH--------HHHHHHHCCCCCEEEEECCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEE---CC
T ss_conf 99988788999--------99999855988449998999678776232346568569999999999849999998---97
Q ss_pred CCCCCH---HHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEE-CCCEEEECCCCCH--HHHHCCCCEEEEECCC
Q ss_conf 434310---235666432100231002332036500100002121000-0121320222000--1221058625643247
Q gi|254781179|r 62 FGEDGL---VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP-VCPSILVNRFTMD--SQHLISPPYVIKPLKG 135 (300)
Q Consensus 62 ~gEdg~---iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIp-tp~~~~~~~~~~~--~~~~~~~P~ivKP~~g 135 (300)
|.-- |...|+..|||..||+..++.|-.+|..+|++|+++||| |++|....+.... .-...++|+||||.-.
T Consensus 74 --E~pL~~Gi~D~l~~~gi~vFGP~k~aA~LE~SK~FaK~fm~~~~IP~ta~~~~~~~~~ea~~~~~~~~~piVIKadGL 151 (435)
T PRK06395 74 --DPVLATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFNACFSEKDAARDYITSMKDVAVKPIGL 151 (435)
T ss_pred --CHHHHCCHHHHHHHCCCCEECCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf --678866145599768994668428873263279889999998099856645323999999999997099848973422
Q ss_pred CCCCCEEEECCH-HHHHHHHHHH-CCCCCCCCCCCCCCCCCCEEEEEECCCCC-CCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 764211432598-9999988630-03668854223335788457887314444-20022025543333110000112222
Q gi|254781179|r 136 GSSLGIIVIKKD-QSIPLDLLQS-SSWNHGDQLLIEQYVDGIELTCGVMGDAS-LDVTEIAVPKSDFYSYELKYSSLNST 212 (300)
Q Consensus 136 gsS~Gv~~v~~~-~el~~~~~~~-~~~~~~~~vlVEefI~G~E~~v~Vl~~~~-~~~~ei~~~~~~~~dy~~Ky~~~~~~ 212 (300)
.+++||.++.+. +..+++.... ..+..+..++||||+.|.|+++.++.|+. +.+..........||.+.--+++..-
T Consensus 152 AaGKGV~V~~~~~~~~~ea~~~~~~~~~~~~~vvIEE~L~G~E~S~~a~~dG~~~~~lp~aqDhKR~~dgD~GPNTGGMG 231 (435)
T PRK06395 152 TGGKGVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKMTGEEFSLQAFSDGKHLSFMPIVQDYKRAYEGDHGPNTGGMG 231 (435)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCEEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 57896489558577899999999988734885999999844168999997699558587301253344799999999874
Q ss_pred CCCCC-----CCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEEEEEECCCCEEEEEEECCCCCCCHH-HHHHHHHHHC
Q ss_conf 45865-----2116665544444445775348-----76457999999768983999974726588822-3899999983
Q gi|254781179|r 213 HVLPA-----KIPLDIYKEVQRLAFLAHQAIG-----CRGISRSDFLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYA 281 (300)
Q Consensus 213 ~~~Pa-----~l~~~~~~~i~~~a~~~~~alg-----~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~-s~~p~~~~~~ 281 (300)
-+.|+ .+++++.++++++...+.+.|. ++|+-=+.++++. +.+++||-|.+-|=-.. -.+|++
T Consensus 232 aysp~~~~~p~l~~~~~e~~~~Ii~pti~~l~~eg~~y~GvLy~GlMit~--~gpkVlEyN~RfGDPE~QviLp~L---- 305 (435)
T PRK06395 232 SISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMDTP--NGVKVIEINARFADPEGINVLYLL---- 305 (435)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEC--CCCEEEEEEECCCCCHHHHHHHHH----
T ss_conf 56888888743277899999999999999999649970899877898508--996489986203880688887760----
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 9998999999999
Q gi|254781179|r 282 GYSFRELLLWMVE 294 (300)
Q Consensus 282 G~s~~~li~~ii~ 294 (300)
.-++.+++..+++
T Consensus 306 ~~Dl~~ll~a~~~ 318 (435)
T PRK06395 306 KSDFVETLHQIYS 318 (435)
T ss_pred CCCHHHHHHHHHC
T ss_conf 0529999999970
No 56
>KOG0368 consensus
Probab=99.84 E-value=7.4e-20 Score=147.41 Aligned_cols=210 Identities=20% Similarity=0.287 Sum_probs=165.0
Q ss_pred HHCCCCEEEECCCCCCC---CCCHHHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEE----E---CC-
Q ss_conf 75399899992548843---4310235666432100231002332036500100002121000012132----0---22-
Q gi|254781179|r 47 AHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----V---NR- 115 (300)
Q Consensus 47 ~~~~~D~vf~~lhG~~g---Edg~iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~----~---~~- 115 (300)
++...|.||. +|| |+-.++..|...||-|+||+..+..---||...--+++.+|+||.+|-- + .+
T Consensus 134 e~~~VdAVWa----GWGHASENP~LPe~L~~~~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS~v~~~~~~~~ 209 (2196)
T KOG0368 134 ERTDVDAVWA----GWGHASENPELPERLSANGIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGSGVKVEHIEDK 209 (2196)
T ss_pred HHCCCCEEEE----CCCCCCCCCCHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECC
T ss_conf 7435535761----555445684257889767928988946777763216877898875499721446886314455056
Q ss_pred -------CC-------------CHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCC-
Q ss_conf -------20-------------001221058625643247764211432598999998863003668854223335788-
Q gi|254781179|r 116 -------FT-------------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG- 174 (300)
Q Consensus 116 -------~~-------------~~~~~~~~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~~~~~~~~vlVEefI~G- 174 (300)
.+ ....+.+|||++||...||+++||.+|++.+++...+.+....-.+.++.+=+-..+
T Consensus 210 ~~~v~Vpedly~Kacv~~~eegLeaae~IGfPvMIKASEGGGGKGIRkv~n~ddF~~lf~qv~~EvPGSPIFlMK~a~~A 289 (2196)
T KOG0368 210 TNLVSVPEDLYEKACVRNVEEGLEAAEKIGFPVMIKASEGGGGKGIRKVENEDDFKALFKQVQNEVPGSPIFLMKLADQA 289 (2196)
T ss_pred CCEEECCHHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCEEHHHHCCCC
T ss_conf 76273578986534308888999999862983699954578976613045667899999999855899955520033675
Q ss_pred CEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECC
Q ss_conf 457887314444200220255433331100001122224586521-1666554444444577534876457999999768
Q gi|254781179|r 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 (300)
Q Consensus 175 ~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~l-~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~ 253 (300)
|.++|.++.|+--.++.+.-.+..+ +.+. ...++..|+.+ +.++.+++++.|.++.+.+|+.+.+.|++.+.+.
T Consensus 290 RHlEVQlLaDqYGn~IsLfgRDCSi---QRRh--QKIIEEAPatIap~etf~~Me~~AvrLak~VGYvSAGTVEYLYsp~ 364 (2196)
T KOG0368 290 RHLEVQLLADQYGNVISLFGRDCSI---QRRH--QKIIEEAPATIAPPETFKKMEQAAVRLAKLVGYVSAGTVEYLYSPD 364 (2196)
T ss_pred CEEEEEHHHHHHCCEEEEECCCCHH---HHHH--HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCEECCEEEEEEECC
T ss_conf 4021002245308787774366237---7877--7887618854178899999999999998763611133689997258
Q ss_pred CCEEEEEEECCC
Q ss_conf 983999974726
Q gi|254781179|r 254 SRKVFWLEINVQ 265 (300)
Q Consensus 254 ~g~~~~lEvN~~ 265 (300)
+|++||+|.||+
T Consensus 365 d~~fyFLELNPR 376 (2196)
T KOG0368 365 DGEYYFLELNPR 376 (2196)
T ss_pred CCCEEEEECCCC
T ss_conf 981799962763
No 57
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.83 E-value=6.1e-20 Score=147.93 Aligned_cols=189 Identities=19% Similarity=0.235 Sum_probs=128.0
Q ss_pred CHHHHHHCC-CCHHCCCCCCCCEEECCCEEEECCCCCHHHH---HCCCCEEEEECCCCCCCCEEEEC---CHHHHHHHHH
Q ss_conf 002332036-5001000021210000121320222000122---10586256432477642114325---9899999886
Q gi|254781179|r 83 GILASALSM-DKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---LISPPYVIKPLKGGSSLGIIVIK---KDQSIPLDLL 155 (300)
Q Consensus 83 ~~~~~~l~~-dK~~~k~~l~~~gIptp~~~~~~~~~~~~~~---~~~~P~ivKP~~ggsS~Gv~~v~---~~~el~~~~~ 155 (300)
++..+.+.| ||..||++|+++|+|||....+++.+...+. .-+.|+||||.+.--++||++.+ +.+++.+++.
T Consensus 479 d~y~~~limenk~vtK~vl~~~g~~vp~g~~~~~~~~a~~~~~~~~~k~ivvKpkstn~g~gi~if~~~~~~~~~~~A~~ 558 (753)
T PRK02471 479 DNYISPLIMENKVVTKKILAEAGFPVPAGDEFTSLEEALADYSLFEDKAIVVKPKSTNFGLGISIFKEVASLEDYQKALE 558 (753)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 21576898841199999999859989998740789999999998679966868077778776598348999899999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCC---CCC------CC-----------CCCC-----------
Q ss_conf 3003668854223335788457887314444200220255---433------33-----------1100-----------
Q gi|254781179|r 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP---KSD------FY-----------SYEL----------- 204 (300)
Q Consensus 156 ~~~~~~~~~~vlVEefI~G~E~~v~Vl~~~~~~~~ei~~~---~~~------~~-----------dy~~----------- 204 (300)
.+++++..||||+||+|.||.+-|++++...+.+...+ +++ .. +++.
T Consensus 559 --~af~~d~~VlVE~~i~G~dyR~lVI~~kvvAv~~R~Pa~VvGDG~~TI~eLI~~kN~dp~Rg~~~~~pl~~I~ld~~~ 636 (753)
T PRK02471 559 --IAFKEDSSVLVEEFIVGTEYRFFVLDGKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTPLEKIQLGEIE 636 (753)
T ss_pred --HHHHCCCEEEEEEEECCCCEEEEEECCEEEEEEECCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCHHH
T ss_conf --998569818999731687069999999999999047973771867569999998658855578877877222369899
Q ss_pred C-CCC--CCCCCCC--------------------CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-------CC
Q ss_conf 0-011--2222458--------------------6521166655444444457753487645799999976-------89
Q gi|254781179|r 205 K-YSS--LNSTHVL--------------------PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP-------LS 254 (300)
Q Consensus 205 K-y~~--~~~~~~~--------------------Pa~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~-------~~ 254 (300)
+ +.. +-+-..+ ..+.++++....+++|.++++++|+ ..+.||+++.. ..
T Consensus 637 ~~~L~~qg~tldsVp~~ge~V~Lr~naNlSTGG~siDvTD~ihp~~~~~A~~aa~a~gl-~i~GvDii~~di~~p~~~~~ 715 (753)
T PRK02471 637 QLMLKQQGLTFDSIPKKGEIVYLRENSNISTGGDSIDMTDDMHDSYKQIAVKAAKALGA-KICGVDLIIPDLTQPASPEN 715 (753)
T ss_pred HHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCCCCCC
T ss_conf 99999859994552888989998347615789871504667798999999999986099-85689997157776664457
Q ss_pred CEEEEEEECCCCCCCHHHHHH
Q ss_conf 839999747265888223899
Q gi|254781179|r 255 RKVFWLEINVQPGMTPVSIFP 275 (300)
Q Consensus 255 g~~~~lEvN~~PGlt~~s~~p 275 (300)
+...+||+|..|||.-| .||
T Consensus 716 ~~~~IIEvN~~P~l~mH-~~P 735 (753)
T PRK02471 716 PNYGIIELNFNPAMYMH-CFP 735 (753)
T ss_pred CCEEEEEECCCCCHHHH-CCC
T ss_conf 96499996688641420-787
No 58
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.83 E-value=1.4e-20 Score=152.02 Aligned_cols=189 Identities=20% Similarity=0.246 Sum_probs=134.4
Q ss_pred CHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCC--CHHHHHCCCCEEEEECCCCCCCCEEE-ECCHHHHHHHHHHHCC
Q ss_conf 00233203650010000212100001213202220--00122105862564324776421143-2598999998863003
Q gi|254781179|r 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLLQSSS 159 (300)
Q Consensus 83 ~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~--~~~~~~~~~P~ivKP~~ggsS~Gv~~-v~~~~el~~~~~~~~~ 159 (300)
++.+.++|.||.+||++++.+|+++|....+.+.+ +......| |+||||.+|--++||++ +.+.++++.++...
T Consensus 288 SAvAms~c~DK~lT~rll~~AG~~VP~~~~~~~~~~~~~fl~~~G-~VVVKP~dGnqGrGVtvnl~t~eev~~A~~~A-- 364 (547)
T TIGR03103 288 SAVAMSLCDDKRLTRRLVSEAGLQVPEQQLAGNGEAVEAFLAEHG-AVVVKPVRGEQGKGISVDVRTPDDLEAAIAKA-- 364 (547)
T ss_pred HHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC-CEEECCCCCCCCCCEEECCCCHHHHHHHHHHH--
T ss_conf 899988740499999999973998999745699899999998739-99977687888861587259999999999999--
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCEEE----------------ECCCCC-----------CC-CCCCC-------
Q ss_conf 66885422333578845788731444420022----------------025543-----------33-31100-------
Q gi|254781179|r 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTE----------------IAVPKS-----------DF-YSYEL------- 204 (300)
Q Consensus 160 ~~~~~~vlVEefI~G~E~~v~Vl~~~~~~~~e----------------i~~~~~-----------~~-~dy~~------- 204 (300)
..++..||||+|++|.||.+-|++++.+.+.+ .....+ .+ .|-+.
T Consensus 365 ~~~~~~VIVE~fi~G~D~RlLVIggkVVAAA~R~Pa~VvGDG~sTI~eLIe~qnrrr~~~~g~esrI~lD~~t~~~L~~q 444 (547)
T TIGR03103 365 RQFCDRVLLERYVPGEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLAEA 444 (547)
T ss_pred HHHCCCEEEEEEECCCCEEEEEECCEEEEEECCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHHHHC
T ss_conf 97599579998406971699999999999981479679848662099998430577556789975334699999999984
Q ss_pred CCCC------CCCCCC----------CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE-CCCCEEEEEEECCCCC
Q ss_conf 0011------222245----------8652116665544444445775348764579999997-6898399997472658
Q gi|254781179|r 205 KYSS------LNSTHV----------LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD-PLSRKVFWLEINVQPG 267 (300)
Q Consensus 205 Ky~~------~~~~~~----------~Pa~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d-~~~g~~~~lEvN~~PG 267 (300)
.|.. +...++ +..+.+++++.++.++|.++++++|+ +++.|||++. ...-...|||+|-.||
T Consensus 445 G~tldSVp~~Ge~V~LR~nANLSTGGtaiDVTD~VHPe~~~~A~~AAraIGL-dIaGIDliv~DIs~P~~vIIEvNa~PG 523 (547)
T TIGR03103 445 GLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARALDI-PVVGIDFLVPDVTGPDYVIIEANERPG 523 (547)
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEEEEECCCCCCCEEEEEECCCCC
T ss_conf 9981225888999999426602689851614567698999999999997399-855689984268999818999778965
Q ss_pred CCHHHHHH
Q ss_conf 88223899
Q gi|254781179|r 268 MTPVSIFP 275 (300)
Q Consensus 268 lt~~s~~p 275 (300)
|.-|..=|
T Consensus 524 L~nHePqp 531 (547)
T TIGR03103 524 LANHEPQP 531 (547)
T ss_pred CCCCCCCC
T ss_conf 02279971
No 59
>KOG0370 consensus
Probab=99.80 E-value=9.1e-19 Score=140.42 Aligned_cols=269 Identities=17% Similarity=0.223 Sum_probs=198.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC---------CCHHHHHHHCC------------CCEEEECCCCCCCCC
Q ss_conf 787127889999999999999879889996158---------65688887539------------989999254884343
Q gi|254781179|r 7 GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------RSVGLVLAHLK------------PDLAFNVLHGNFGED 65 (300)
Q Consensus 7 G~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~---------~~~~~~l~~~~------------~D~vf~~lhG~~gEd 65 (300)
|.|-|-+- .|-.....|+++|+.++.+..+ .....+++... +.-++..+.|+.-.+
T Consensus 932 GSSVEFDw---caV~~~rtLr~~g~kTimvNyNPETVSTDyDecdrLYFeeis~E~vmDiYe~E~~~G~iis~GGQ~pnN 1008 (1435)
T KOG0370 932 GSSVEFDW---CAVGCARTLRKLGKKTIMVNYNPETVSTDYDECDRLYFEEISYERVMDIYELENSEGIIISVGGQLPNN 1008 (1435)
T ss_pred CCCEEECH---HHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH
T ss_conf 56205513---355479999970984699956865435756777667675423665343554306772699836848620
Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCC--HHHHHCCCCEEEEECCCCCCCCEEE
Q ss_conf 10235666432100231002332036500100002121000012132022200--0122105862564324776421143
Q gi|254781179|r 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIV 143 (300)
Q Consensus 66 g~iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~--~~~~~~~~P~ivKP~~ggsS~Gv~~ 143 (300)
+.--|-..|+...|.+|.....+.|++.+.++|.+.||..|+|.-+++.+. ...+..+|||.|+|..-=|+-.+.+
T Consensus 1009 --iA~~L~r~~~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~Wkelt~~~eA~~F~~~VgYP~lvRPSYVLSGaAMnv 1086 (1435)
T KOG0370 1009 --IALKLHRNGVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAWKELTSLEEAKKFAEKVGYPVLVRPSYVLSGAAMNV 1086 (1435)
T ss_pred --HHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHCCCCEEECCCCEECCHHHHH
T ss_conf --213758628867548857611145677899988772788610233226889999998659966851101331015552
Q ss_pred ECCHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CEEEE-EECCCCCCCEEEE--CCCCCCCCCCCCCCCCCCCCCCCCC-C
Q ss_conf 2598999998863003668854223335788-45788-7314444200220--2554333311000011222245865-2
Q gi|254781179|r 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTC-GVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPA-K 218 (300)
Q Consensus 144 v~~~~el~~~~~~~~~~~~~~~vlVEefI~G-~E~~v-~Vl~~~~~~~~ei--~~~~~~~~dy~~Ky~~~~~~~~~Pa-~ 218 (300)
++++++|+..+.+..+...+.++++-+||+| +|+.| +|-.++.+-+.-| .+.+.+ -++++.+...|+ +
T Consensus 1087 ~~~~~dl~~~L~~A~~vs~dhPVVisKfie~AkEidvDAVa~~G~~~~haiSEHvEnAG-------VHSGDAtlv~Ppq~ 1159 (1435)
T KOG0370 1087 VYSESDLKSYLEQASAVSPDHPVVISKFIEGAKEIDVDAVASDGKVLVHAISEHVENAG-------VHSGDATLVLPPQD 1159 (1435)
T ss_pred HHCHHHHHHHHHHHHHCCCCCCEEHHHHHCCCCEECHHHHCCCCEEEEEEHHHHHHCCC-------CCCCCEEEECCCHH
T ss_conf 10478899999977640877977727754445010312310478189986233411246-------55786037578112
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 116665544444445775348764579999997689839999747265888223899999983999899999999
Q gi|254781179|r 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 (300)
Q Consensus 219 l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~~ii 293 (300)
++++..++|++++.++.++++..|..++.|+. +++++.+||.|.+.. --||...+..|.+|-++-..-+
T Consensus 1160 l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~--k~n~lkVIECN~RaS----RSFPFvSKtlgvdfi~~At~~i 1228 (1435)
T KOG0370 1160 LSADTLERIKDIAAKVAKALKITGPFNMQIIA--KDNELKVIECNVRAS----RSFPFVSKTLGVDFIALATRAI 1228 (1435)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE--CCCEEEEEEEEEEEE----CCCCCEEHHCCCHHHHHHHHHH
T ss_conf 49889999999999998886166874379995--498078999640343----3666300105831999988997
No 60
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=99.79 E-value=2.5e-17 Score=131.21 Aligned_cols=273 Identities=19% Similarity=0.226 Sum_probs=164.3
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHCC--CEEEEE----------------------CCC--CCHHHHHHHCCCCEEE
Q ss_conf 89836787127889999999999999879--889996----------------------158--6568888753998999
Q gi|254781179|r 2 AVLMGGISSEREVSLSSGKACASALEDAG--FKVSQI----------------------DVD--RSVGLVLAHLKPDLAF 55 (300)
Q Consensus 2 ~vl~GG~s~E~~iSl~S~~~i~~aL~~~g--~~v~~i----------------------d~~--~~~~~~l~~~~~D~vf 55 (300)
.++-|+...||- ++.+|.+.. .+++.. +.+ +.+.....+.++|+|+
T Consensus 3 VLVIGsGGREHA--------la~kl~~Sp~v~~l~~aPGn~NpG~~~~a~~~~~~~~~~~~~d~~~i~~fa~~~~IDLvv 74 (485)
T PRK05784 3 VLLVGDGAREHA--------IAEALAKSPKGYRIYALSSHLNPGIEEIVKKTGGEYFIGNPTSPGEVVKAAEEVSPDLVV 74 (485)
T ss_pred EEEECCCHHHHH--------HHHHHHCCCCCCEEEEEECCCCCCHHHHHHHCCCCEECCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 999898889999--------999996098989899973898752567764258721204877999999999981999999
Q ss_pred ECCCCCCCCCCH---HHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEE-CCCEEEECCCCCHHH-HHCCCCEEE
Q ss_conf 925488434310---235666432100231002332036500100002121000-012132022200012-210586256
Q gi|254781179|r 56 NVLHGNFGEDGL---VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP-VCPSILVNRFTMDSQ-HLISPPYVI 130 (300)
Q Consensus 56 ~~lhG~~gEdg~---iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIp-tp~~~~~~~~~~~~~-~~~~~P~iv 130 (300)
. |+ |+-- |...|+..|||..||+-.++.|--.|..+|.+|+++||| |++|..+++.+.... .....|+||
T Consensus 75 V---GP--E~PL~~Gi~D~l~~~gi~vFGP~k~aA~LE~SK~FaK~fm~~~~IPtta~~~~f~~~~~A~~~l~~~~piVI 149 (485)
T PRK05784 75 I---GP--EEPLFAGVADALREEGFPVFGASSKCAEIEKSKVFARSLMWKYGIPGRLRYGVFKDVEEAYSFAEYGGSVAI 149 (485)
T ss_pred E---CC--HHHHHHHHHHHHHHCCCCEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEE
T ss_conf 8---97--388761258999737990789688994141278899999997289966401213899999999864898499
Q ss_pred EECCCCCCCCEEEECCHHH-----HHHHHH--------HHCCC-CCCCCCCCCCCCCCCEEEEEECCCCC-CCEEEECCC
Q ss_conf 4324776421143259899-----999886--------30036-68854223335788457887314444-200220255
Q gi|254781179|r 131 KPLKGGSSLGIIVIKKDQS-----IPLDLL--------QSSSW-NHGDQLLIEQYVDGIELTCGVMGDAS-LDVTEIAVP 195 (300)
Q Consensus 131 KP~~ggsS~Gv~~v~~~~e-----l~~~~~--------~~~~~-~~~~~vlVEefI~G~E~~v~Vl~~~~-~~~~ei~~~ 195 (300)
|+.-..+++||.++.+..+ ...++. ....+ ..+..++||||+.|.|+++.++.|+. +-++.....
T Consensus 150 KaDGLAaGKGV~V~~~~~~~~~~~~~e~~~~~~~~~~~~~~~fg~ag~~VvIEEfL~G~E~S~~a~~DG~~~~~lp~aQD 229 (485)
T PRK05784 150 KPARQAGGKGVKVIYDLQAYLSNEKDEVLTKGAEEIKEQLASYRDVEEKILVEEKVDGVEYTVQVLTDGESVFPLPPVQD 229 (485)
T ss_pred ECCHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCEEEECCCCCC
T ss_conf 21133067851882272777777899999999999998765432468709999644681799999982996998922205
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHC----C--CCCEEEEEEEEECCCCEEEEEEECC
Q ss_conf 43333110000112222458652-----11666554444444577534----8--7645799999976898399997472
Q gi|254781179|r 196 KSDFYSYELKYSSLNSTHVLPAK-----IPLDIYKEVQRLAFLAHQAI----G--CRGISRSDFLFDPLSRKVFWLEINV 264 (300)
Q Consensus 196 ~~~~~dy~~Ky~~~~~~~~~Pa~-----l~~~~~~~i~~~a~~~~~al----g--~~g~~rvDf~~d~~~g~~~~lEvN~ 264 (300)
....||.+.--+++..--+.|++ ++++..+++.++.....++| | .+|+-=+.++++. +| +++||-|.
T Consensus 230 hKR~~dgD~GPNTGGMGAysP~~~~~P~l~~~~~~~~~~Ii~pti~~l~~e~g~~y~GvLY~GlMit~-~G-PkVlEfN~ 307 (485)
T PRK05784 230 NPHAYEYGIGPETGGMGSVSGPGELLPFIEEEEYEEAVEIVKATVEAIRKETGERYVGVLSGQMMLTA-LG-PTVIEYYS 307 (485)
T ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECC-CC-CEEEEEEC
T ss_conf 76556899998999870067876677544799999998748999999986169972788876788618-98-48999968
Q ss_pred CCCCCH-HHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 658882-23899999983999899999999
Q gi|254781179|r 265 QPGMTP-VSIFPEMAAYAGYSFRELLLWMV 293 (300)
Q Consensus 265 ~PGlt~-~s~~p~~~~~~G~s~~~li~~ii 293 (300)
+.|=-. ...+|++ .-++-+++...+
T Consensus 308 RfGDPEtQ~iLp~L----~sDl~~l~~a~~ 333 (485)
T PRK05784 308 RLGDPEALNALYLY----EGDFYELFELAA 333 (485)
T ss_pred CCCCCHHHHHHHHH----HCCHHHHHHHHH
T ss_conf 87883388899874----263999999998
No 61
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.78 E-value=5.1e-18 Score=135.60 Aligned_cols=213 Identities=22% Similarity=0.262 Sum_probs=147.3
Q ss_pred HHHHHHHHHHH----HHCCCEEEEE----CCCC-------------CHHHHHHHCCCCEEEECCCCCCCCCCHH---HHH
Q ss_conf 99999999999----9879889996----1586-------------5688887539989999254884343102---356
Q gi|254781179|r 16 LSSGKACASAL----EDAGFKVSQI----DVDR-------------SVGLVLAHLKPDLAFNVLHGNFGEDGLV---QAI 71 (300)
Q Consensus 16 l~S~~~i~~aL----~~~g~~v~~i----d~~~-------------~~~~~l~~~~~D~vf~~lhG~~gEdg~i---q~~ 71 (300)
+.-|+++.++| .+.|++++.. +++- .....+ .+.|..+-.. +-+||.+ ...
T Consensus 20 ~~EG~aMlesll~~F~~~~ve~y~~~~f~~~~ig~~f~s~~~~~~~~~ek~l--e~~Da~LvIA---PEdd~lLy~Ltri 94 (307)
T COG1821 20 LAEGRAMLESLLRAFAKSGVEVYETLTFADPSIGVRFKSTADDVLRDEEKAL--EKADATLVIA---PEDDGLLYSLTRI 94 (307)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEECCHHHHHHHHHHHH--HCCCEEEEEE---CCCCCHHHHHHHH
T ss_conf 5768999999999998559459986033266665113204367889999987--5288469980---4767718999999
Q ss_pred HHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHH
Q ss_conf 66432100231002332036500100002121000012132022200012210586256432477642114325989999
Q gi|254781179|r 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 (300)
Q Consensus 72 le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~~~~~~~~P~ivKP~~ggsS~Gv~~v~~~~el~ 151 (300)
+|.. +.-.||++.+.+.|.||+++.+.++.. +++|+..-+ .. .+-.+|+||+.|-++.|+....+..++
T Consensus 95 ~E~~-~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e~-----~~---~~~k~ViKp~dgCgge~i~~~~~~pd~- 163 (307)
T COG1821 95 YEEY-VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTREW-----AE---EPKKYVIKPADGCGGEGILFGRDFPDI- 163 (307)
T ss_pred HHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHH-CCCCCCCCC-----CC---CCCEEEECCCCCCCCCEEECCCCCCCH-
T ss_conf 9987-675089777876751089899988411-248885535-----56---785688622556775102046777521-
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 98863003668854223335788457887314444200220255433331100001122224586521166655444444
Q gi|254781179|r 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 (300)
Q Consensus 152 ~~~~~~~~~~~~~~vlVEefI~G~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~l~~~~~~~i~~~a 231 (300)
.|++|||+|...+|++..+....+..+-.+--.|+..+-+|..+ +++++.++.+++.+.|
T Consensus 164 --------------~i~qEfIeG~~lSVSL~~GEkv~pLsvNrQfi~~~~~~~~y~gg------~~pi~he~k~~~~~~A 223 (307)
T COG1821 164 --------------EIAQEFIEGEHLSVSLSVGEKVLPLSVNRQFIIFAGSELVYNGG------RTPIDHELKREAFEEA 223 (307)
T ss_pred --------------HHHHHHCCCCCEEEEEECCCCCCCCEECHHHHHHCCCEEEECCC------CCCCCCHHHHHHHHHH
T ss_conf --------------66787437761489985587344302322321001423443367------6788817889999999
Q ss_pred HHHHHHCC-CCCEEEEEEEEECCCCEEEEEEECCCCC
Q ss_conf 45775348-7645799999976898399997472658
Q gi|254781179|r 232 FLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINVQPG 267 (300)
Q Consensus 232 ~~~~~alg-~~g~~rvDf~~d~~~g~~~~lEvN~~PG 267 (300)
+++.+.++ |+||..||+.+. ++||++||||+|-
T Consensus 224 i~aVeci~Gl~GYVGVDlVls---D~pYvIEINpR~T 257 (307)
T COG1821 224 IRAVECIPGLNGYVGVDLVLS---DEPYVIEINPRPT 257 (307)
T ss_pred HHHHHHHCCCCCEEEEEEEEC---CCCEEEEECCCCC
T ss_conf 999974025554266789964---9857999468777
No 62
>KOG0370 consensus
Probab=99.75 E-value=3.7e-18 Score=136.53 Aligned_cols=265 Identities=16% Similarity=0.223 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECCC---------------------CCHHHHHHHCCCCEEEECCCCCCCCCC--
Q ss_conf 127889999999999999879889996158---------------------656888875399899992548843431--
Q gi|254781179|r 10 SEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFGEDG-- 66 (300)
Q Consensus 10 ~E~~iSl~S~~~i~~aL~~~g~~v~~id~~---------------------~~~~~~l~~~~~D~vf~~lhG~~gEdg-- 66 (300)
.|-+ .||.+..+||++.+..++++.++ +.....++..+||-++-...|+.+-+-
T Consensus 394 GEFD---YSGsQAiKAlkEe~i~TiLiNPNIAtvQts~~lAD~vyflpvT~~~vt~vi~~erPd~il~tfggqtaLncgv 470 (1435)
T KOG0370 394 GEFD---YSGSQAIKALKEENIFTILINPNIATVQTSKGLADKVYFLPVTPEYVTKVIKAERPDGILLTFGGQTALNCGV 470 (1435)
T ss_pred CEEE---EEHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCEEEEECCCCCCCCCCE
T ss_conf 0355---4078898765532617999789601000255521289995058799999988618773788427765445643
Q ss_pred --HHHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCC--CHHHHHCCCCEEEEECCCCCCCCEE
Q ss_conf --023566643210023100233203650010000212100001213202220--0012210586256432477642114
Q gi|254781179|r 67 --LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGII 142 (300)
Q Consensus 67 --~iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~--~~~~~~~~~P~ivKP~~ggsS~Gv~ 142 (300)
.=+++++.+++...|.+..+...+.|+.++-+.|++.+.+.+++...+.-+ ...++.++||++++.+..=++.|-.
T Consensus 471 el~k~gvf~~~~vkvLgt~i~ti~ttedr~lfa~am~ei~e~ia~s~a~~sie~al~aae~l~ypvivRaayalgglgSg 550 (1435)
T KOG0370 471 ELDKAGVFAQYGVKVLGTPIQTIITTEDRDLFARALNEINEKIAPSEAVSTIEEALEAAERLGYPVIVRAAYALGGLGSG 550 (1435)
T ss_pred EEEECCCCCCCCHHHHCCCCCCCEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
T ss_conf 53002100003415437875521231427889999876315056256676799999888862828999999985376643
Q ss_pred EECCHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CH
Q ss_conf 32598999998863003668854223335788-45788731444420022025543333110000112222458652-11
Q gi|254781179|r 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220 (300)
Q Consensus 143 ~v~~~~el~~~~~~~~~~~~~~~vlVEefI~G-~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~-l~ 220 (300)
.+.|++||.....+ ++...+++|||+-+.| +|++..|+.|..-..+-++--++ ||- -.-+.+++..+.|++ ++
T Consensus 551 fa~n~eeL~~l~~~--a~a~s~QilvekSlkGwkevEyevvrDa~~nciTvcnmen--~Dp-lgihtGdSiVvapsqtls 625 (1435)
T KOG0370 551 FANNEEELQDLAAQ--ALALSPQILVEKSLKGWKEVEYEVVRDAYDNCITVCNMEN--FDP-LGIHTGDSIVVAPSQTLS 625 (1435)
T ss_pred CCCCHHHHHHHHHH--CCCCCCEEEEHHHHCCCCCEEEEEEECCCCCHHHHCCCCC--CCC-CEEECCCEEEEEECCCCC
T ss_conf 34448999999764--3125861542233244343489998020004053357734--576-201016507996142257
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf 666554444444577534876457999999768983999974726588822389999998399989
Q gi|254781179|r 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 (300)
Q Consensus 221 ~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~ 286 (300)
++.++.++..|+++.+.||.-|=+.|.+-+++..-++++||||.+ |+..|-+ +-++.|+..+
T Consensus 626 d~ey~mlrttaikVirhlgvvGEcniQyaL~p~s~~y~IiEVNar--LSrssaL--ASkaTgypLA 687 (1435)
T KOG0370 626 DEEYQMLRTTAIKVIRHLGVVGECNIQYALNPYSLEYRIIEVNAR--LSRSSAL--ASKATGYPLA 687 (1435)
T ss_pred HHHHHHHHHCCHHHEECCCCCCCCCCEEEECCCCEEEEEEEEEEE--EEEHHHH--HCCCCCCCHH
T ss_conf 688999875020211026876656530441666304799998757--7401344--3267667589
No 63
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=99.63 E-value=5.7e-15 Score=116.10 Aligned_cols=203 Identities=18% Similarity=0.244 Sum_probs=131.5
Q ss_pred HHHHHHHHHCCCCCHHHH-HHCCCCHHCCCCCCCCEEECCCEEEECCCCCHHHHHCCCCEEEEECCCCC--CCCE---EE
Q ss_conf 566643210023100233-20365001000021210000121320222000122105862564324776--4211---43
Q gi|254781179|r 70 AILELLEIPYTHSGILAS-ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS--SLGI---IV 143 (300)
Q Consensus 70 ~~le~~~ipy~Gs~~~~~-~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~~~~~~~~P~ivKP~~ggs--S~Gv---~~ 143 (300)
.+-+.+.|||. +-.-. -+| +|.+..+...+.|+|.|+.+.+++........+.||+|+||..||| +.+- +.
T Consensus 94 eLSa~f~v~lp--~w~~l~wlc-eKPllY~ra~elgl~~P~Ty~v~S~~d~~~~el~FPvILKP~mgg~~~~~araKa~~ 170 (415)
T COG3919 94 ELSAFFEVPLP--DWALLRWLC-EKPLLYNRAEELGLPYPKTYLVNSEIDTLVDELTFPVILKPGMGGSVHFEARAKAFT 170 (415)
T ss_pred HHHHHHCCCCC--CHHHHHHHH-HCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHEEEEEEECCCCCCCCEEEHHHHEEE
T ss_conf 99887657787--389999986-082888889981999760677231443212314403886178887510010100143
Q ss_pred ECCHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CEEE--EEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 2598999998863003668854223335788-4578--873144442002202554333311000011222245865211
Q gi|254781179|r 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELT--CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 (300)
Q Consensus 144 v~~~~el~~~~~~~~~~~~~~~vlVEefI~G-~E~~--v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~l~ 220 (300)
+.+.+|++.++.........+.++|||||+| -|=. -+-+=+.-.|+.|.. ......|-..+.-.++. +.+.
T Consensus 171 a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeft--arr~rqyPvdfgytst~----vevv 244 (415)
T COG3919 171 AADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFT--ARRLRQYPVDFGYTSTV----VEVV 244 (415)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHCCCCHHHHH--CCHHHCCCCCCCCCCEE----EEEC
T ss_conf 16779999999998874399725887705799822320988985798346442--34222188654645279----9952
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHH
Q ss_conf 66655444444457753487645799999976898399997472658882238999999839998999
Q gi|254781179|r 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 (300)
Q Consensus 221 ~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~l 288 (300)
+ .+++.+.+++..+..+..|++.+||.+|++||.+.++||||.|+-. + -.+.++|++...+
T Consensus 245 D--n~Q~i~aar~~L~si~htGlvevefK~D~RDGs~KlldvNpRpw~w--f---gl~taaG~nLg~~ 305 (415)
T COG3919 245 D--NQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVNPRPWRW--F---GLVTAAGYNLGRY 305 (415)
T ss_pred C--CHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEECCCCCCE--E---EEEECCCCCCCCE
T ss_conf 8--2899999999998631255478998756877724677625887304--5---4774045453014
No 64
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.56 E-value=6.4e-14 Score=109.34 Aligned_cols=239 Identities=15% Similarity=0.239 Sum_probs=142.6
Q ss_pred HHHHHHHHHHCCCEEEEECC--CCCH------------------------HHHHH---HC--CCCEEEECCCCCCCCCCH
Q ss_conf 99999999987988999615--8656------------------------88887---53--998999925488434310
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDV--DRSV------------------------GLVLA---HL--KPDLAFNVLHGNFGEDGL 67 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~--~~~~------------------------~~~l~---~~--~~D~vf~~lhG~~gEdg~ 67 (300)
.+.|...+.++||+|..++. +.++ .|+++ .. +.|..+...-|..-++..
T Consensus 21 tR~vveSA~klGf~V~sv~~y~~~Dl~~~a~~~l~~r~~~~~~rfe~~de~~li~~~~~~~~dvD~~ii~~sg~e~l~~~ 100 (389)
T COG2232 21 TRPVVESASKLGFEVYSVQYYDPADLPGDAISYLRERPGELLGRFENLDEQKLIEAAEDLAEDVDAPIIPFSGFEALRTS 100 (389)
T ss_pred CHHHHHHHHHCCEEEEEEEEECCCCCCCCCCEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCC
T ss_conf 41767787744718998675343236642102788448545276558898999999986445324125403553212456
Q ss_pred HHHHHHHHHHHCCCCCHH-HHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCHHHHHCCCCEEEEECCCCCCCCEEEECC
Q ss_conf 235666432100231002-3320365001000021210000121320222000122105862564324776421143259
Q gi|254781179|r 68 VQAILELLEIPYTHSGIL-ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 (300)
Q Consensus 68 iq~~le~~~ipy~Gs~~~-~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~~~~~~~~P~ivKP~~ggsS~Gv~~v~~ 146 (300)
. ..+-++.|+++. ...-+.||..+.+.+...|.|.|...... .-..--.|+|+||+.|+++. +.++.-
T Consensus 101 g-----~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~~~e-----~~~~gekt~IlKPv~GaGG~-~el~~~ 169 (389)
T COG2232 101 G-----ELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEKKIE-----PLEEGEKTLILKPVSGAGGL-VELVKF 169 (389)
T ss_pred C-----CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH-----HHHHCCEEEEEEECCCCCCE-EEECCC
T ss_conf 7-----545644567827889998888865201010289997043211-----44402101477302378860-131004
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCC--CCEE--E-ECCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 8999998863003668854223335788457887314444--2002--2-025543333110000112222458652116
Q gi|254781179|r 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--LDVT--E-IAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221 (300)
Q Consensus 147 ~~el~~~~~~~~~~~~~~~vlVEefI~G~E~~v~Vl~~~~--~~~~--e-i~~~~~~~~dy~~Ky~~~~~~~~~Pa~l~~ 221 (300)
+++.. -..+|.||||+|+-++|+++.++. +.+. . +.......|+ +-.|.++ .+|.. .
T Consensus 170 ~Ee~~-----------~~~~i~Qefi~G~p~Svs~is~g~~a~~la~N~QiI~~~~~~~~-~f~Y~GN----lTP~~--~ 231 (389)
T COG2232 170 DEEDP-----------PPGFIFQEFIEGRPVSVSFISNGSDALTLAVNDQIIDGLRGEYS-QFVYKGN----LTPFP--Y 231 (389)
T ss_pred CCCCC-----------CCCEEHHHHCCCCEEEEEEEECCCCEEEEEEEEEEECCCCCCCC-CCEECCC----CCCCC--C
T ss_conf 33458-----------76600334317841379997358623899970022145323344-4101267----67776--5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 66554444444577534876457999999768983999974726588822389999998399989999999
Q gi|254781179|r 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 (300)
Q Consensus 222 ~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~~i 292 (300)
+..+++.++|..+...||+.|...|||.+.+ ..+|++||||++- ..+--+...+|.+.-++-...
T Consensus 232 ~~~ee~e~la~elV~~lgL~GsnGVDfvl~d--~gpyViEVNPR~q----Gt~e~iE~s~giNl~~lHi~a 296 (389)
T COG2232 232 EEVEEAERLAEELVEELGLVGSNGVDFVLND--KGPYVIEVNPRIQ----GTLECIERSSGINLFRLHIQA 296 (389)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC--CCCEEEEECCCCC----CHHHHHHHHCCCCHHHHHHHH
T ss_conf 0268999999999998423566661068606--8857999568545----237888986177789999998
No 65
>KOG0237 consensus
Probab=99.54 E-value=9.1e-13 Score=101.95 Aligned_cols=253 Identities=18% Similarity=0.126 Sum_probs=152.5
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHCCC--EEE-----------------EECCCCCHHHH----HHHCCCCEEEECC
Q ss_conf 898367871278899999999999998798--899-----------------96158656888----8753998999925
Q gi|254781179|r 2 AVLMGGISSEREVSLSSGKACASALEDAGF--KVS-----------------QIDVDRSVGLV----LAHLKPDLAFNVL 58 (300)
Q Consensus 2 ~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~--~v~-----------------~id~~~~~~~~----l~~~~~D~vf~~l 58 (300)
+++-|+...||- ++..|++.-. +|+ .+|++-..... -.+.+..+|.+
T Consensus 5 vLviGsGgREHa--------l~wkL~qSp~v~~v~vaPGn~G~a~~~~~~~~~~dI~~~d~~ala~f~~e~~I~lVvv-- 74 (788)
T KOG0237 5 VLVIGSGGREHA--------LAWKLKQSPKVKKVYVAPGNGGTASGDASKVPNLDISVADFEALASFCKEHNINLVVV-- 74 (788)
T ss_pred EEEECCCCHHHH--------HHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEE--
T ss_conf 999758842768--------8887632875553898369887456751237556557655999999998746218997--
Q ss_pred CCCCCCCCH---HHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCHHH--HHCC-CCEEEEE
Q ss_conf 488434310---235666432100231002332036500100002121000012132022200012--2105-8625643
Q gi|254781179|r 59 HGNFGEDGL---VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLIS-PPYVIKP 132 (300)
Q Consensus 59 hG~~gEdg~---iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~~~--~~~~-~P~ivKP 132 (300)
|+ |+-- +.+-|-..|||..||+..+.++.-+|..+|.+|.++||||++|..+++.+.... .... .++|||.
T Consensus 75 -GP--E~PL~~Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y~~ft~~e~a~sfi~~~~~~~~ViKA 151 (788)
T KOG0237 75 -GP--ELPLVAGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKYKTFTDPEEAKSFIQSATDKALVIKA 151 (788)
T ss_pred -CC--CHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCEEEEE
T ss_conf -87--326542356666405851017437777766417889988986399832026407879989999848985648960
Q ss_pred CCCCCCCCEEEECCHHHHHHHHHHHCC---CC-CCCCCCCCCCCCCCEEEEEECCC-CCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 247764211432598999998863003---66-88542233357884578873144-44200220255433331100001
Q gi|254781179|r 133 LKGGSSLGIIVIKKDQSIPLDLLQSSS---WN-HGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYS 207 (300)
Q Consensus 133 ~~ggsS~Gv~~v~~~~el~~~~~~~~~---~~-~~~~vlVEefI~G~E~~v~Vl~~-~~~~~~ei~~~~~~~~dy~~Ky~ 207 (300)
.--.+++||.+.++.+|.-+++..... +. .+..++|||+++|.|+++--+-| ..+.++.........+|=+.--+
T Consensus 152 dGLAAGKGViv~~~~~EA~eAv~sIl~~~~fg~AG~tvViEE~LEGeEvS~laftDG~s~~~mp~aQDHKRl~dgD~GpN 231 (788)
T KOG0237 152 DGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSAGKTVVIEELLEGEEVSFLAFTDGYSVRPLPPAQDHKRLGDGDTGPN 231 (788)
T ss_pred CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCEEEEEEEECCCCCCCCCCCCCHHHHCCCCCCCC
T ss_conf 55245771574054799999999998544413566458611230762578999855730233885100255307899998
Q ss_pred CCCCCCCCCCC-CHHHHHHHHHHH----HHHHHHHCCCCCEEEE---EEEEECCCCEEEEEEECCCCCCCH
Q ss_conf 12222458652-116665544444----4457753487645799---999976898399997472658882
Q gi|254781179|r 208 SLNSTHVLPAK-IPLDIYKEVQRL----AFLAHQAIGCRGISRS---DFLFDPLSRKVFWLEINVQPGMTP 270 (300)
Q Consensus 208 ~~~~~~~~Pa~-l~~~~~~~i~~~----a~~~~~alg~~g~~rv---Df~~d~~~g~~~~lEvN~~PGlt~ 270 (300)
.+..-..+|++ .++++.+.+++. +.+-++.=|+. |..| -+++. +++ |.++|-|.+-|=-.
T Consensus 232 TGgmGaY~paPv~s~~ll~~v~~~I~~~Tv~Gm~~eg~~-y~GVLfaGlMl~-k~~-P~vLEfN~RFGDPE 299 (788)
T KOG0237 232 TGGMGAYAPAPVASPKLLDTVQSTIIEPTVDGMAEEGIP-YVGVLFAGLMLT-KDG-PKVLEFNVRFGDPE 299 (788)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEEEEEEEE-CCC-CCEEEEECCCCCCH
T ss_conf 888655654775698999999988766766578763996-256876546883-599-60799840138920
No 66
>PRK05246 glutathione synthetase; Provisional
Probab=99.48 E-value=5e-12 Score=97.21 Aligned_cols=253 Identities=12% Similarity=0.073 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCC--------------------HH-------HHHHHCCCCEEEECCCCCCCCCCHHH-
Q ss_conf 999999999987988999615865--------------------68-------88875399899992548843431023-
Q gi|254781179|r 18 SGKACASALEDAGFKVSQIDVDRS--------------------VG-------LVLAHLKPDLAFNVLHGNFGEDGLVQ- 69 (300)
Q Consensus 18 S~~~i~~aL~~~g~~v~~id~~~~--------------------~~-------~~l~~~~~D~vf~~lhG~~gEdg~iq- 69 (300)
|.-++..+.++.||+|..+++..- .. ..+.-.+.|+||.--..++-.+ .+.
T Consensus 20 TT~~Lm~eAq~rGhev~~~~p~dL~~~~~~v~a~~~~v~~~~~~~~~~~~~~~~~~~L~~fD~V~mRkDPPfD~~-Yi~~ 98 (316)
T PRK05246 20 STFAMMLEAQRRGHELFYYEPDDLSLRGGEVRARARPLTVRDDKGDWYELGEEQRLPLADFDVILMRKDPPFDME-YIYA 98 (316)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCEEEECCEEEEEEEEEEECCCCCCCEEECCCEECCHHHCCEEEECCCCCCCHH-HHHH
T ss_conf 299999999987998999972756998999999999999815888747941515513001989999269999768-8899
Q ss_pred -HHHHH---HHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCHH--HHHCCCCEEEEECCCCCCCCEEE
Q ss_conf -56664---3210023100233203650010000212100001213202220001--22105862564324776421143
Q gi|254781179|r 70 -AILEL---LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIV 143 (300)
Q Consensus 70 -~~le~---~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~~--~~~~~~P~ivKP~~ggsS~Gv~~ 143 (300)
-+||. .|+..+ .+|.+.+.+-+|..+-++-.- +|++.+.++.+... .+.. ..+|+||..|-++.||++
T Consensus 99 T~lLe~~~~~gv~Vi-N~P~~IR~~nEKL~~l~F~~~----iP~TlVt~~~~~i~~F~~~~-~~iVlKPL~g~gG~gV~~ 172 (316)
T PRK05246 99 TYLLERAERAGTLVV-NKPQSLRDANEKLFTLWFPEL----MPPTLVTRDKAEIRAFRAEH-GDIILKPLDGMGGAGIFR 172 (316)
T ss_pred HHHHHHHCCCCEEEE-CCHHHHHHHHHHHHHHHHHHH----CCCEEEECCHHHHHHHHHHH-CCEEEEECCCCCCCEEEE
T ss_conf 999985153870897-698998642647888740644----89935737899999999973-878999756889840899
Q ss_pred EC-CHHHHHHHHHHHCCCCCCCCCCCCCCCC---CCEEEEEECCCCCCC-EEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 25-9899999886300366885422333578---845788731444420-022025543333110000112222458652
Q gi|254781179|r 144 IK-KDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218 (300)
Q Consensus 144 v~-~~~el~~~~~~~~~~~~~~~vlVEefI~---G~E~~v~Vl~~~~~~-~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~ 218 (300)
+. ++..+...++.. ......++++|+||+ +-+..|-++++..++ .+....++++| ++..+.|.+.. +..
T Consensus 173 i~~~d~n~~~i~e~~-t~~~~~~v~vQ~yl~ei~~GDkRiilv~G~~ig~a~~R~p~~gdf---R~Nl~~Gg~~~--~~~ 246 (316)
T PRK05246 173 VKADDPNLGVILETL-TEQGRRPVMAQRYLPEIKEGDKRILLVDGEPVGYALARIPAGGET---RGNLAAGGRGE--ATP 246 (316)
T ss_pred ECCCCCCHHHHHHHH-HHCCCEEEEEEEEHHHCCCCCEEEEEECCEEEHHEEEECCCCCCC---EEEEECCCEEE--EEC
T ss_conf 777862389999999-745873689886512436898799999999911468832678861---13230598026--716
Q ss_pred CHHHHHHHHHHHHHHHH---HHCCCCCEEEEEEEEECCCCEEEEEEEC-CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 11666554444444577---5348764579999997689839999747-2658882238999999839998999999999
Q gi|254781179|r 219 IPLDIYKEVQRLAFLAH---QAIGCRGISRSDFLFDPLSRKVFWLEIN-VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 (300)
Q Consensus 219 l~~~~~~~i~~~a~~~~---~alg~~g~~rvDf~~d~~~g~~~~lEvN-~~PGlt~~s~~p~~~~~~G~s~~~li~~ii~ 294 (300)
|++.. +++|.++. +..|+ -++.+|++ | .|++||| |.|+ .+..+-+..|.+.++.+-.-++
T Consensus 247 lt~~~----~~i~~~i~p~L~~~gl-~f~GiDvi-----g-~~ltEINVTSPt-----gl~ei~~~~~~~~~~~~~d~lE 310 (316)
T PRK05246 247 LTERD----REICAAIGPELKERGL-IFVGIDVI-----G-DYLTEINVTSPT-----GIREIERLTGVDIAGMLWDAIE 310 (316)
T ss_pred CCHHH----HHHHHHHHHHHHHCCC-EEEEEEEE-----C-CEEEEEECCCCH-----HHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99899----9999999999998798-89999753-----7-826899368954-----5999998759998999999999
Q ss_pred HHHCC
Q ss_conf 75117
Q gi|254781179|r 295 DASCL 299 (300)
Q Consensus 295 ~A~~~ 299 (300)
.....
T Consensus 311 ~~~~~ 315 (316)
T PRK05246 311 AKLAA 315 (316)
T ss_pred HHHCC
T ss_conf 87614
No 67
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2; InterPro: IPR005862 The formation of isosinate, a precursor of adenylate and guanylate, from 5-phosphoribosyl 1-pyrophosphate in the de novo purine biosynthesis pathway is basically composed of 10 steps of reactions . Phosphoribosylglycinamide formyltransferase 2 (2.1.2 from EC) is an alternative enzyme to phosphoribosylglycinamide formyltransferase that catalyzes the third step in the de novo purine biosynthesis pathway. ; GO: 0016742 hydroxymethyl- formyl- and related transferase activity, 0009113 purine base biosynthetic process.
Probab=99.46 E-value=1.1e-12 Score=101.33 Aligned_cols=236 Identities=18% Similarity=0.283 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHHCCCEEEEECCC--------------------CCHHHHHHHCCCCEEEECCCCCCCCCCHHHHH--HHH
Q ss_conf 99999999999879889996158--------------------65688887539989999254884343102356--664
Q gi|254781179|r 17 SSGKACASALEDAGFKVSQIDVD--------------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI--LEL 74 (300)
Q Consensus 17 ~S~~~i~~aL~~~g~~v~~id~~--------------------~~~~~~l~~~~~D~vf~~lhG~~gEdg~iq~~--le~ 74 (300)
.-++.+.-.++++|.++..+|.- +.+...+...+||.+.+.+... ....+ +|.
T Consensus 9 ~~g~~~~~~~~~lg~~~~~~d~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~p~~~~p~~~~~-----~~~~l~~~~~ 83 (407)
T TIGR01142 9 ELGKEVAIEAQRLGVEVIAVDRYADAPALQVAHRSYVIDLLDGDALRAVIEREKPDYIVPEIEAI-----ATDALLELEA 83 (407)
T ss_pred CCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHEECCCHHHHHHHHHHHCCCCCCHHHHHH-----HHHHHHHHHH
T ss_conf 53314444454347126873354576213332111100002678999998750674100024455-----4666776652
Q ss_pred HH--HHCCCCCHHHHHHCCCCHHCCCCCC-CCEEECCCEEEECCCCC--HHHHHCCCCEEEEECCCCCCCCEEEECCHHH
Q ss_conf 32--1002310023320365001000021-21000012132022200--0122105862564324776421143259899
Q gi|254781179|r 75 LE--IPYTHSGILASALSMDKMRSKQVVS-SCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 (300)
Q Consensus 75 ~~--ipy~Gs~~~~~~l~~dK~~~k~~l~-~~gIptp~~~~~~~~~~--~~~~~~~~P~ivKP~~ggsS~Gv~~v~~~~e 149 (300)
.| .-.+-++..+..+++|+...+++.. +.|+|+.+|.+....+. .....++||+++||..+.++.|-+++++.++
T Consensus 84 ~gg~c~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~p~~~~p~~~~~g~g~~~~~~~~~ 163 (407)
T TIGR01142 84 EGGECYTVVPTARATKLTLNREGLRRLAAEELGLPTAPYEFADSLEELREAVEKIGFPCVVKPVLSSSGKGQSVVRGPED 163 (407)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHCCCCCCCEEECCHHH
T ss_conf 48824664035202221210567787767763254220011101788999998607750001221146665300047345
Q ss_pred HHHHHHHHC-----CC--CCCCCCCCCCCCCCCEEEEEECC----CCCCCEEEECCCCCCC---CCCCCCCCCCCCCCCC
Q ss_conf 999886300-----36--68854223335788457887314----4442002202554333---3110000112222458
Q gi|254781179|r 150 IPLDLLQSS-----SW--NHGDQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDF---YSYELKYSSLNSTHVL 215 (300)
Q Consensus 150 l~~~~~~~~-----~~--~~~~~vlVEefI~G~E~~v~Vl~----~~~~~~~ei~~~~~~~---~dy~~Ky~~~~~~~~~ 215 (300)
+..++.... .. ....++++|+|++- ++.+..+. ++.-+.+....|-+.. -||... ..
T Consensus 164 ~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~p~g~~~~~g~~~~~--------w~ 234 (407)
T TIGR01142 164 LEKAWEYAKGHQVQEGGRGGAGRVIVEEFIDF-DYEITLLTVRAVDGNGPLTTFCAPIGHRQEDGDYHES--------WQ 234 (407)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC-HHHHHHHEEEECCCCCCEEEECCCCCCCCCCCCCHHC--------CC
T ss_conf 67887665043101134555562455200131-0211000000027777501101322430015540001--------46
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCC
Q ss_conf 65211666554444444577534876457999999768983999974726588
Q gi|254781179|r 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 (300)
Q Consensus 216 Pa~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGl 268 (300)
|..++....++.+.++.++..++|..|+..+++++. .+++||.|+.|.|.-
T Consensus 235 p~~~~~~~~~~~~~~~~~~~~~lgg~g~~g~~~~~~--g~~~~~~~~~p~p~~ 285 (407)
T TIGR01142 235 PQELSEKALEEAKRIAKRVTDALGGYGLFGVELFVK--GDEVWFSEVSPRPHD 285 (407)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC--CCEEEEECCCCCCCC
T ss_conf 212217889999999988887634664001445651--661354204667666
No 68
>pfam02955 GSH-S_ATP Prokaryotic glutathione synthetase, ATP-grasp domain.
Probab=99.44 E-value=2.1e-12 Score=99.59 Aligned_cols=155 Identities=13% Similarity=0.160 Sum_probs=97.7
Q ss_pred ECCCEEEECCCCCHH--HHHCCCCEEEEECCCCCCCCEEEECCHH-HHHHHHHHHCCCCCCCCCCCCCCCC---CCEEEE
Q ss_conf 001213202220001--2210586256432477642114325989-9999886300366885422333578---845788
Q gi|254781179|r 106 PVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQ-SIPLDLLQSSSWNHGDQLLIEQYVD---GIELTC 179 (300)
Q Consensus 106 ptp~~~~~~~~~~~~--~~~~~~P~ivKP~~ggsS~Gv~~v~~~~-el~~~~~~~~~~~~~~~vlVEefI~---G~E~~v 179 (300)
-+|++.+.++.+... .+. ..++|+||..|..+.||+++.+.+ .+...+.. ........+++||||+ +.|+.|
T Consensus 11 ~~P~T~vt~~~~~i~~f~~~-~g~vVvKPl~Gs~G~GV~~i~~~~~~~~~i~e~-~~~~~~~~ii~QeyI~~~~~gD~Rv 88 (176)
T pfam02955 11 LIPPTLVTRDKEEIRAFLEE-HGDIILKPLDGMGGAGVFRIKKDDPNLNVILET-LTQYGRRPVMAQRYLPEIKEGDKRI 88 (176)
T ss_pred CCCCEEEECCHHHHHHHHHH-CCCEEEEECCCCCCCCEEEECCCCHHHHHHHHH-HHHCCCCCEEEEECCCCCCCCCEEE
T ss_conf 08694798899999999997-798999957888876759954783558999999-9846888398643137678997699
Q ss_pred EECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH---HHCCCCCEEEEEEEEECCCCE
Q ss_conf 73144442002202554333311000011222245865211666554444444577---534876457999999768983
Q gi|254781179|r 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH---QAIGCRGISRSDFLFDPLSRK 256 (300)
Q Consensus 180 ~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~---~alg~~g~~rvDf~~d~~~g~ 256 (300)
-|++++.+..+....+.++ |.+..+.|.... +.+++++. +++|.++. ++.|+ .++.||++ +
T Consensus 89 ~vi~g~~v~a~~R~~~~g~---~r~Nl~~Gg~~~--~~~lt~~~----~~ia~~~a~~l~~~Gl-~faGVDii----g-- 152 (176)
T pfam02955 89 LLVNGEPIGALARIPAEGE---FRGNLAAGGRGE--ATELTERD----REICETIGPKLKERGL-FFVGLDVI----G-- 152 (176)
T ss_pred EEECCEEEEEEEEECCCCC---CEEEECCCCEEE--CCCCCHHH----HHHHHHHHHHHHHCCC-EEEEEEEE----C--
T ss_conf 9999999899998547985---214402698000--57899999----9999999999998699-79999984----7--
Q ss_pred EEEEEEC-CCCCCCHHHHHHHHHHHCCC
Q ss_conf 9999747-26588822389999998399
Q gi|254781179|r 257 VFWLEIN-VQPGMTPVSIFPEMAAYAGY 283 (300)
Q Consensus 257 ~~~lEvN-~~PGlt~~s~~p~~~~~~G~ 283 (300)
.|++||| +.|| .+..+-+..|+
T Consensus 153 ~~l~EVNvtsP~-----g~~~i~~~~g~ 175 (176)
T pfam02955 153 DYLTEINVTSPT-----GIREIERLTGV 175 (176)
T ss_pred CEEEEEECCCCH-----HHHHHHHHHCC
T ss_conf 908899588907-----89999997497
No 69
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase homolog; InterPro: IPR011758 Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (IPR004666 from INTERPRO), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown..
Probab=99.36 E-value=7.1e-12 Score=96.24 Aligned_cols=186 Identities=21% Similarity=0.286 Sum_probs=114.3
Q ss_pred CCCHHCCCCCCCCEEECCCEEE-EC-CCCCHHHHHC--CCC-EEEEECCCCCCCCEEEEC---------------CHHHH
Q ss_conf 6500100002121000012132-02-2200012210--586-256432477642114325---------------98999
Q gi|254781179|r 91 MDKMRSKQVVSSCGVPVCPSIL-VN-RFTMDSQHLI--SPP-YVIKPLKGGSSLGIIVIK---------------KDQSI 150 (300)
Q Consensus 91 ~dK~~~k~~l~~~gIptp~~~~-~~-~~~~~~~~~~--~~P-~ivKP~~ggsS~Gv~~v~---------------~~~el 150 (300)
=||..||.++.++||.+|.-+= ++ ..+.+.-+.+ ++| +||||+.|+++.||.++. +++|.
T Consensus 36 DDKl~TK~~A~AaGi~VPelyGVI~~q~ev~~~~~ivkdh~dFVIKPAqGsGG~GIlVit~r~~~ryr~~sG~~i~~eei 115 (320)
T TIGR02291 36 DDKLKTKILAIAAGIAVPELYGVIEIQKEVKSLDDIVKDHEDFVIKPAQGSGGDGILVITDRLDERYRKSSGALISKEEI 115 (320)
T ss_pred CCHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEECCCCCCCEECCCCCCCCHHHH
T ss_conf 31367889987336711013010023466543466627889836726606798727997036688403541010154567
Q ss_pred HHHHHHHCCC-----CCCCCCCCCCCCCCC------------EEEEEECCCCCC-CEEEECCC-----------------
Q ss_conf 9988630036-----688542233357884------------578873144442-00220255-----------------
Q gi|254781179|r 151 PLDLLQSSSW-----NHGDQLLIEQYVDGI------------ELTCGVMGDASL-DVTEIAVP----------------- 195 (300)
Q Consensus 151 ~~~~~~~~~~-----~~~~~vlVEefI~G~------------E~~v~Vl~~~~~-~~~ei~~~----------------- 195 (300)
+..+....+- .+.+.+|||--|.-. ++.+-|+.+-.+ ..+.....
T Consensus 116 E~hvSniL~GLySLGG~~D~AliEyrvkfDp~F~~~SYeGVPDiRiIVf~GyPVmaM~RlpTr~SdGKANLHQGAvGvGi 195 (320)
T TIGR02291 116 ERHVSNILAGLYSLGGKRDRALIEYRVKFDPLFESVSYEGVPDIRIIVFKGYPVMAMLRLPTRASDGKANLHQGAVGVGI 195 (320)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 78888888777650799773688532010534477111345872689641861021002765678883021246024202
Q ss_pred --------CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCC
Q ss_conf --------433331100001122224586521166655444444457753487645799999976898399997472658
Q gi|254781179|r 196 --------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 (300)
Q Consensus 196 --------~~~~~dy~~Ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PG 267 (300)
..-++++--..|++.+..+---.+|. =+++-++|-.+|+..|+ ||-.+|+.+|.+.| |.+||.|.+||
T Consensus 196 DlaTG~t~~a~w~n~pi~~HPDTg~~~sglq~Ph--W~~ll~LAa~c~el~GL-GY~GvD~VLDke~G-PlvLELNARPG 271 (320)
T TIGR02291 196 DLATGKTLRAVWLNQPIEKHPDTGKDVSGLQVPH--WEKLLKLAAECYELVGL-GYLGVDMVLDKEKG-PLVLELNARPG 271 (320)
T ss_pred ECCCCCEEEEEECCCCCCCCCCCCCCCCCEECCC--HHHHHHHHHHHHHHCCC-CCCCEEEEEECCCC-CEEEEECCCCC
T ss_conf 3114503212420676145838887535101667--77899999877543067-60021068745798-81786447887
Q ss_pred CCHHHHHHHHHHHCCCCH
Q ss_conf 882238999999839998
Q gi|254781179|r 268 MTPVSIFPEMAAYAGYSF 285 (300)
Q Consensus 268 lt~~s~~p~~~~~~G~s~ 285 (300)
|. -+.|...|+++
T Consensus 272 L~-----IQIAN~~Gl~~ 284 (320)
T TIGR02291 272 LA-----IQIANDAGLLP 284 (320)
T ss_pred CH-----HHHHCCCCCCH
T ss_conf 21-----22313145336
No 70
>pfam05770 Ins134_P3_kin Inositol 1, 3, 4-trisphosphate 5/6-kinase. This family consists of several inositol 1, 3, 4-trisphosphate 5/6-kinase proteins. Inositol 1,3,4-trisphosphate is at a branch point in inositol phosphate metabolism. It is dephosphorylated by specific phosphatases to either inositol 3,4-bisphosphate or inositol 1,3-bisphosphate. Alternatively, it is phosphorylated to inositol 1,3,4,6-tetrakisphosphate or inositol 1,3,4,5-tetrakisphosphate by inositol trisphosphate 5/6-kinase.
Probab=99.30 E-value=5.5e-10 Score=84.11 Aligned_cols=232 Identities=19% Similarity=0.270 Sum_probs=145.9
Q ss_pred HHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCCCCCCCCC--HHHHHHHHH-HHHCCCCCHHHHHHCCCCHHCC
Q ss_conf 9999999879889996158656888875399899992548843431--023566643-2100231002332036500100
Q gi|254781179|r 21 ACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDG--LVQAILELL-EIPYTHSGILASALSMDKMRSK 97 (300)
Q Consensus 21 ~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~lhG~~gEdg--~iq~~le~~-~ipy~Gs~~~~~~l~~dK~~~k 97 (300)
+...-.++.|++.+.+|.++.+.. +..+|+++-=+.| ++- .+|.+.+.. +++.+-+ +.+...-.|+..|-
T Consensus 26 ~f~~~~~~~gi~~v~ID~~~pL~~---QGPfDvilHKltd---~~~~~~l~~y~~~hP~v~viDP-~~ai~~L~dR~~m~ 98 (307)
T pfam05770 26 SLAELARKRGIDLVQLDPSRPLSE---QGPFDIIIHKLTD---KEWRHRLEEFREAHPEVPVLDP-PPAIRRLHNRQSML 98 (307)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHH---CCCCEEEEEECCH---HHHHHHHHHHHHHCCCCEEECC-HHHHHHHHCHHHHH
T ss_conf 999989767967998789998455---4982699996562---8999999999997899789779-99999987899999
Q ss_pred CCCCC-------CEEECCCEEEECCCCC-----HHHHHCCCCEEEEECC-CCC--CCCEEEECCHHHHHHHHHHHCCCCC
Q ss_conf 00212-------1000012132022200-----0122105862564324-776--4211432598999998863003668
Q gi|254781179|r 98 QVVSS-------CGVPVCPSILVNRFTM-----DSQHLISPPYVIKPLK-GGS--SLGIIVIKKDQSIPLDLLQSSSWNH 162 (300)
Q Consensus 98 ~~l~~-------~gIptp~~~~~~~~~~-----~~~~~~~~P~ivKP~~-ggs--S~Gv~~v~~~~el~~~~~~~~~~~~ 162 (300)
+++.+ ..+.+|++..+.+... .....+.||+|+||.. .|| |--+.++.+.+.|.. -
T Consensus 99 ~~v~~l~~~~~~~~v~~P~~v~i~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Malvf~~~gL~~---------L 169 (307)
T pfam05770 99 QVVADLNLSMEDGRFGVPPQVVVMKDASSLSRAGAKAGLTFPLIAKPLVADGTAKSHEMSLVYDQEGLNK---------L 169 (307)
T ss_pred HHHHHHCCCCCCCEEECCCEEEECCCHHHHHHHHHHCCCCCCEEECCHHCCCCCCCCEEEEEECHHHHHC---------C
T ss_conf 9999810656798383697799728677889999975986765623300257856534789977757622---------7
Q ss_pred CCCCCCCCCCC--CCEEEEEECCCCCCCEEEECCC---------CCCCCCCCC--CCCCCCC-----CCCCCCCCHHHHH
Q ss_conf 85422333578--8457887314444200220255---------433331100--0011222-----2458652116665
Q gi|254781179|r 163 GDQLLIEQYVD--GIELTCGVMGDASLDVTEIAVP---------KSDFYSYEL--KYSSLNS-----THVLPAKIPLDIY 224 (300)
Q Consensus 163 ~~~vlVEefI~--G~E~~v~Vl~~~~~~~~ei~~~---------~~~~~dy~~--Ky~~~~~-----~~~~Pa~l~~~~~ 224 (300)
..++++||||. |.=|-|.|+|+....+..-..| ...+|++.. |-..... .....+.+++ .
T Consensus 170 ~pP~VlQefvNH~gvlfKvyVvGd~~~vv~R~Slpn~~~~~~~~~~~~~~f~~vS~~~~~~~~~~~~~~~~~~~~p~--~ 247 (307)
T pfam05770 170 QPPLVLQEFVNHGGVLFKVYVVGEHVTVVKRRSLPDVSAGTLDRSSGSFRFSQVSNLTASADDAELDKILEIAEMPP--D 247 (307)
T ss_pred CCCEEEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHCCCCCCCCCCCC--H
T ss_conf 99758898754786799999964378999646777877332346564133100467778862232135652023999--8
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEEECCC-CEEEEEEECCCCCCCHH
Q ss_conf 544444445775348764579999997689-83999974726588822
Q gi|254781179|r 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINVQPGMTPV 271 (300)
Q Consensus 225 ~~i~~~a~~~~~alg~~g~~rvDf~~d~~~-g~~~~lEvN~~PGlt~~ 271 (300)
.-++++|..+-++||+. +.++|++.+..+ +++|+++||-.||...-
T Consensus 248 ~~~~~la~~LR~~lgL~-LFgfDvI~~~~t~~r~~VIDINyFPgY~~v 294 (307)
T pfam05770 248 PFLEDLARALRRALGLR-LFNFDIIRDAGTADRYLVIDINYFPGYAKM 294 (307)
T ss_pred HHHHHHHHHHHHHCCCE-EECEEEEEECCCCCEEEEEEECCCCCCCCC
T ss_conf 99999999999980994-966489998898985899990679898888
No 71
>PRK12458 glutathione synthetase; Provisional
Probab=99.12 E-value=1.2e-08 Score=75.42 Aligned_cols=219 Identities=12% Similarity=0.123 Sum_probs=130.3
Q ss_pred CCCEEEECCCCCCCCCCH-----HH----HHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCHH
Q ss_conf 998999925488434310-----23----566643210023100233203650010000212100001213202220001
Q gi|254781179|r 50 KPDLAFNVLHGNFGEDGL-----VQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 (300)
Q Consensus 50 ~~D~vf~~lhG~~gEdg~-----iq----~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~~ 120 (300)
..|+||---..++.++.. +. -+.+..|+..+ .+|.+.+.+-.|..+-++-. .-+|++.+.++.+...
T Consensus 85 ~~D~I~mRkDPPfD~~yln~~~yi~~~~l~~~~~~gv~VI-N~P~slR~~nEKL~~~~Fp~---~i~P~TLVT~d~~~I~ 160 (349)
T PRK12458 85 GFDVLFLRNNPSLDNLARPWADSVGIIFGRLAMRDGVLVL-NDPDGLRIANNKLYFQSFPE---EVRPTTHISRNREEIR 160 (349)
T ss_pred HCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEE-CCHHHHHCCCCHHHHHHCCC---CCCCCEEEECCHHHHH
T ss_conf 6989999489999831265999999999987650898898-18599861701200641555---4798779867999999
Q ss_pred H--HHCC-CCEEEEECCCCCCCCEEEECCHH--HHHHHHHHHCCCCCCCCCCCCCCCCCC---EEEEEECCCCCCC----
Q ss_conf 2--2105-86256432477642114325989--999988630036688542233357884---5788731444420----
Q gi|254781179|r 121 Q--HLIS-PPYVIKPLKGGSSLGIIVIKKDQ--SIPLDLLQSSSWNHGDQLLIEQYVDGI---ELTCGVMGDASLD---- 188 (300)
Q Consensus 121 ~--~~~~-~P~ivKP~~ggsS~Gv~~v~~~~--el~~~~~~~~~~~~~~~vlVEefI~G~---E~~v~Vl~~~~~~---- 188 (300)
+ +..+ ..+|+||..|-++.||++++..+ .+...++.. ..+..+++|+||+.. +..+-++++..++
T Consensus 161 ~F~~~~k~~~iIlKPL~G~GG~gIf~i~~~d~~Nl~~I~e~~---~~~~~vm~Q~flpei~~GDkRIilinGepi~~~~~ 237 (349)
T PRK12458 161 AFLEESPSDKMILKPLQGSGGQGVFLIEKSAESNLNQILEFY---SGDGYVIAQEYIPGAEEGDVRILMLNGEPLERDGR 237 (349)
T ss_pred HHHHHCCCCCEEEEECCCCCCCCEEEECCCCHHHHHHHHHHH---HCCCCEEEECCCHHCCCCCEEEEEECCEEECCCCC
T ss_conf 999981588389864678888763886357434199999997---04881999921003416886999999999114454
Q ss_pred --EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEEEEECCCCEEEEEEEC
Q ss_conf --02202554333311000011222245865211666554444444577534---8764579999997689839999747
Q gi|254781179|r 189 --VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI---GCRGISRSDFLFDPLSRKVFWLEIN 263 (300)
Q Consensus 189 --~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~al---g~~g~~rvDf~~d~~~g~~~~lEvN 263 (300)
.+-...++++| ++..+.|+... +..|++. -+++|.++...| |+ -++++|++ ++ |+.|||
T Consensus 238 ~gal~RiP~~gd~---R~Nl~~GG~~~--~~~Lt~~----d~~I~~~i~p~L~~~gl-~fvGiDvI----G~--~LtEIN 301 (349)
T PRK12458 238 YAAMRRVPAEGDV---RSNIHAGGTVV--KHTLTKE----ELELCEHIRPKLVRDGL-FFVGLDIV----GD--KLIEVN 301 (349)
T ss_pred EEEEECCCCCCCH---HHHHHCCCCCC--CCCCCHH----HHHHHHHHHHHHHHCCC-EEEEEEEE----CC--CEEEEC
T ss_conf 1356535667613---55652688630--3688999----99999999999998799-89999861----78--456881
Q ss_pred C-CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 2-65888223899999983999899999999975
Q gi|254781179|r 264 V-QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 (300)
Q Consensus 264 ~-~PGlt~~s~~p~~~~~~G~s~~~li~~ii~~A 296 (300)
. .|+ .+...-+..|.++++.+-.-++..
T Consensus 302 VTSPt-----gi~ei~~~~~~~~a~~~~d~~E~~ 330 (349)
T PRK12458 302 VFSPG-----GLGRINKLNNVDFSETIINAKERK 330 (349)
T ss_pred CCCCH-----HHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 78960-----299998751998699999999999
No 72
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.05 E-value=2.4e-08 Score=73.55 Aligned_cols=212 Identities=12% Similarity=0.161 Sum_probs=140.2
Q ss_pred HHHHHHHC--CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCH
Q ss_conf 68888753--9989999254884343102356664321002310023320365001000021210000121320222000
Q gi|254781179|r 42 VGLVLAHL--KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 (300)
Q Consensus 42 ~~~~l~~~--~~D~vf~~lhG~~gEdg~iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~ 119 (300)
....++.. ++-++|-.. |..-+.++..+|.-...|++.--..+-+|..|-++..++|+|..|..+..-.+.+
T Consensus 82 v~~~ik~rg~~gk~~fvmf------dEeTe~La~~lGl~v~~P~a~LR~~ldsKi~t~Rlgn~AGvpsVPnvl~~v~sY~ 155 (480)
T PRK06524 82 TLEFIKNRGPGGKACFVMF------DEETQALARQAGLEVMHPPAELRHRLDSKIVMTRLADEAGVPSVPHVIGRVDSYE 155 (480)
T ss_pred HHHHHHHCCCCCEEEEEEE------CHHHHHHHHHHCCCEECCHHHHHHHHCCEEEEEEECCCCCCCCCCCEEECCCCHH
T ss_conf 9999984389875899995------6378999997097275582999977436114675211158876763000356699
Q ss_pred H------HHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEE-EECC-CC--CCCE
Q ss_conf 1------22105862564324776421143259899999886300366885422333578845788-7314-44--4200
Q gi|254781179|r 120 S------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMG-DA--SLDV 189 (300)
Q Consensus 120 ~------~~~~~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~~~~~~~~vlVEefI~G~E~~v-~Vl~-~~--~~~~ 189 (300)
. +..+|--+||-...|.|+...+.++++.++.+....... .+++=|=+-|.-++.++ +++. .+ +-|.
T Consensus 156 ~L~~~~~~aglG~DLVvQt~~GdsG~tTFFi~~e~D~~k~a~eIvg---e~eiKiMKRI~~~~~aiEac~T~~GTivgP~ 232 (480)
T PRK06524 156 ELSALAHEAGLGDDLVVQTAYGDAGSTTFFVRGERDWDKYAGEIVG---QPEIKVMKRIRNVEVCIEACVTRHGTVIGPA 232 (480)
T ss_pred HHHHHHHHCCCCCCEEEECCCCCCCCEEEEEECHHHHHHHHHHHHC---CCHHHHHHHHCCCCCCEEEEECCCCEEECHH
T ss_conf 9999988708886358842567887416997256567675776406---6315344342476411112200387363246
Q ss_pred -EEECCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEEEEECCCCEEEEEEECC
Q ss_conf -220255433331100001122-2245865211666554444444577534---87645799999976898399997472
Q gi|254781179|r 190 -TEIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAI---GCRGISRSDFLFDPLSRKVFWLEINV 264 (300)
Q Consensus 190 -~ei~~~~~~~~dy~~Ky~~~~-~~~~~Pa~l~~~~~~~i~~~a~~~~~al---g~~g~~rvDf~~d~~~g~~~~lEvN~ 264 (300)
+++.- -.++ ..|.++= ...+.|.-+++.++++.+++..+.-..| |+|||.-+||.+|..++++|+=|+||
T Consensus 233 MTelvG-f~EL----TPykGgWCGNei~~~~~~p~~r~kare~~~k~Gd~L~~eGYrGyFevDfLiD~dt~evyLGElNP 307 (480)
T PRK06524 233 MTSLVG-YPEL----TPYRGAWCGNDIWRGALPPAQTRAAREMVAKLGDVLSREGYRGYFEVDLLHDLDADELYLGEVNP 307 (480)
T ss_pred HHHHCC-CCCC----CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEECCCC
T ss_conf 775428-4116----76677643554550228913669999999998799874456635899998855778475403676
Q ss_pred C-CC
Q ss_conf 6-58
Q gi|254781179|r 265 Q-PG 267 (300)
Q Consensus 265 ~-PG 267 (300)
. .|
T Consensus 308 RisG 311 (480)
T PRK06524 308 RLSG 311 (480)
T ss_pred CCCC
T ss_conf 4448
No 73
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=99.05 E-value=1e-07 Score=69.60 Aligned_cols=271 Identities=14% Similarity=0.086 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH-CCCC------------------------EEEECCCCCCCCCCHHHHH
Q ss_conf 99999999999879889996158656888875-3998------------------------9999254884343102356
Q gi|254781179|r 17 SSGKACASALEDAGFKVSQIDVDRSVGLVLAH-LKPD------------------------LAFNVLHGNFGEDGLVQAI 71 (300)
Q Consensus 17 ~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~-~~~D------------------------~vf~~lhG~~gEdg~iq~~ 71 (300)
+||.+|++..++.|+++..+.....-..+-+- .-+| .+| .=||.+-+=-....+
T Consensus 23 HSALqIl~GAK~EGF~Tv~vc~kgRe~~Y~~f~~~~De~iv~d~f~di~~~~~q~~L~~~NaI~-IPhgSfv~Y~G~d~i 101 (363)
T PRK13277 23 HSALDVLDGAKDEGFRTIAVCQRGRERTYREFKGIVDEVIVLDKFKDILSEEIQEELREENAIF-VPNRSFAVYVGYDAI 101 (363)
T ss_pred HHHHHHHCCHHHCCCCEEEEECCCCCCHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCEEE-ECCCCEEEEECHHHH
T ss_conf 2598885448773994799957987524775557784699955577775489999998789799-648884677448888
Q ss_pred HHHHHHHCCCCCHHHHHHC-CCCHHCCCCCCCCEEECCCEEEECCCCCHHHHHCCCCEEEEEC--CCCCCCCEEEECCHH
Q ss_conf 6643210023100233203-6500100002121000012132022200012210586256432--477642114325989
Q gi|254781179|r 72 LELLEIPYTHSGILASALS-MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL--KGGSSLGIIVIKKDQ 148 (300)
Q Consensus 72 le~~~ipy~Gs~~~~~~l~-~dK~~~k~~l~~~gIptp~~~~~~~~~~~~~~~~~~P~ivKP~--~ggsS~Gv~~v~~~~ 148 (300)
...+.+|+.|+.-.=-.=. .++.....+|.++|||+|+-+- ..+.+..|+|||.- .|+=++|-+++.+.+
T Consensus 102 E~~~~VP~FGNR~lLrwEer~~~~~~~~LLe~Agi~~Pk~~~-------~PeeIDr~VIVK~~gAkg~~grGyF~a~s~~ 174 (363)
T PRK13277 102 ENEFPVPIFGNRYLLRWEERTGEKNYYRLLEKAGIPRPRTFK-------PPEEIDRPVIVKLPEAKRRLERGFFIAASYK 174 (363)
T ss_pred HCCCCCCEECCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCC-------CHHHCCCCEEEEECCCCCCCCCEEEEECCHH
T ss_conf 506888711475663223451167899999867999870059-------9666785269974567787763589967989
Q ss_pred HHHHHHHHHCCCC-----CCCCCCCCCCCCCCEEEEEECCCC---CCCEEEE----CCCCCCCCCCCCCCCCC---CCC-
Q ss_conf 9999886300366-----885422333578845788731444---4200220----25543333110000112---222-
Q gi|254781179|r 149 SIPLDLLQSSSWN-----HGDQLLIEQYVDGIELTCGVMGDA---SLDVTEI----AVPKSDFYSYELKYSSL---NST- 212 (300)
Q Consensus 149 el~~~~~~~~~~~-----~~~~vlVEefI~G~E~~v~Vl~~~---~~~~~ei----~~~~~~~~dy~~Ky~~~---~~~- 212 (300)
|+........... .-..+.||||+-|.-+.....-.. .+....+ ...-++++-.-++.+-. ...
T Consensus 175 ef~~k~~~li~~G~I~~e~l~~~~IeEyv~G~~~~~~fFySpl~~~lEllgiD~R~esniDg~~rlpA~~Ql~~~~~p~~ 254 (363)
T PRK13277 175 DFYEKSERLIKQGVIDREDLEKARIEEYVIGAHFNFNYFYSPIRDRVELLGIDRRIQSNLDGFVRLPAPQQLKLNEEPRY 254 (363)
T ss_pred HHHHHHHHHHHCCCCCHHHCCCCEEEEEECCCEEEEEECCCCCCCCEEEEECCCEEEECHHHHHCCCHHHHHCCCCCCCE
T ss_conf 99999999987587572214443789984376466521025323750366311102414144423986788416899845
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHHHHHHC------CCCCEEEEEEEEECCCCEEEEEEECC------CCCCCHHHHHHHH
Q ss_conf ---45865211666554444444577534------87645799999976898399997472------6588822389999
Q gi|254781179|r 213 ---HVLPAKIPLDIYKEVQRLAFLAHQAI------GCRGISRSDFLFDPLSRKVFWLEINV------QPGMTPVSIFPEM 277 (300)
Q Consensus 213 ---~~~Pa~l~~~~~~~i~~~a~~~~~al------g~~g~~rvDf~~d~~~g~~~~lEvN~------~PGlt~~s~~p~~ 277 (300)
-..|+.+-+.+..++-+++.+..++. |+-|....+..+|+ +.++++.||-+ +|.|...|.|...
T Consensus 255 vvvGn~p~vlRESLL~~vf~~ge~fV~ask~l~~pG~iGPFcLq~ivt~-dle~vvFevS~RI~gGtN~~~~~gsPYs~l 333 (363)
T PRK13277 255 IEVGHEPATIRESLLEKVFDMGEKFVEATKELYPPGIIGPFTLQTIVTP-DLDFVVYDVAPRIGGGTNVYMGVGSPYSKL 333 (363)
T ss_pred EEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC-CCEEEEEEEECCCCCCCCCCCCCCCCCHHH
T ss_conf 9988853243176579999999999999997469986144335689858-860999998442148877624799996354
Q ss_pred HHHCCCCHHHHHHHHHHHH
Q ss_conf 9983999899999999975
Q gi|254781179|r 278 AAYAGYSFRELLLWMVEDA 296 (300)
Q Consensus 278 ~~~~G~s~~~li~~ii~~A 296 (300)
.-...+|.-.=+..=|..|
T Consensus 334 ~~~epms~GrRIA~EIk~A 352 (363)
T PRK13277 334 YFGKPMSTGRRIAMEIKEA 352 (363)
T ss_pred HCCCCCCHHHHHHHHHHHH
T ss_conf 4289763678999999999
No 74
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=99.02 E-value=4.1e-08 Score=72.11 Aligned_cols=268 Identities=13% Similarity=0.134 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCC------------------HHHHHH---HC-CCCEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 9999999999987988999615865------------------688887---53-9989999254884343102356664
Q gi|254781179|r 17 SSGKACASALEDAGFKVSQIDVDRS------------------VGLVLA---HL-KPDLAFNVLHGNFGEDGLVQAILEL 74 (300)
Q Consensus 17 ~S~~~i~~aL~~~g~~v~~id~~~~------------------~~~~l~---~~-~~D~vf~~lhG~~gEdg~iq~~le~ 74 (300)
+||.+|++..++.|+++..+..... ....++ .. +-+.+| .=||.+-+=-.... .|.
T Consensus 27 HSALqIl~GAK~EGF~T~~vc~~gr~~~Y~~f~~~De~iv~d~f~di~~~q~~L~~~NaI~-IPhgSfv~Y~G~~~-iE~ 104 (356)
T PRK13278 27 HSSLQILKGAKKEGFRTIAICEKKREKFYKRFPFADEFIIVDSFSDILEIQEELREMNAIV-IPHGSFVAYLGLEN-VEE 104 (356)
T ss_pred HHHHHHHCCHHHCCCCEEEEECCCCCCHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCEEE-ECCCCEEEEECHHH-HHH
T ss_conf 2598885328773995799966997453454776427999476899999999998789699-64888589836888-850
Q ss_pred HHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHH
Q ss_conf 32100231002332036500100002121000012132022200012210586256432477642114325989999988
Q gi|254781179|r 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 (300)
Q Consensus 75 ~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~~~~~~~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~ 154 (300)
+.+|+.|+.-.= .--.|...-+++|.++|||+|+-+- ..+.+..|+|||.-.--.++|-+++.+.+|+....
T Consensus 105 ~~VP~FGNR~lL-rwEs~r~~~~~lLe~Agi~~Pk~~~-------~PeeIDr~VIVK~~gAkggrGyF~a~s~~ef~~k~ 176 (356)
T PRK13278 105 FKVPMFGNREIL-RWESDRDKERKLLEGAGIRIPRKYE-------DPEDIDGPVIVKLPGAKGGRGYFIASSPEEFWEKI 176 (356)
T ss_pred CCCCCCCCHHHH-HHHHCHHHHHHHHHHCCCCCCEECC-------CHHHCCCCEEEEECCCCCCCEEEEECCHHHHHHHH
T ss_conf 888820587786-6510307899999867999871158-------95557852699746777774589957989999999
Q ss_pred HHHCCC---CCCCCCCCCCCCCCCEEEEEECCCC---CCCEEEE----CCCCCCCCCCCCCCCCC---CC----CCCCCC
Q ss_conf 630036---6885422333578845788731444---4200220----25543333110000112---22----245865
Q gi|254781179|r 155 LQSSSW---NHGDQLLIEQYVDGIELTCGVMGDA---SLDVTEI----AVPKSDFYSYELKYSSL---NS----THVLPA 217 (300)
Q Consensus 155 ~~~~~~---~~~~~vlVEefI~G~E~~v~Vl~~~---~~~~~ei----~~~~~~~~dy~~Ky~~~---~~----~~~~Pa 217 (300)
...... .....+.||||+-|.-+.....-.. .+....+ ...-++++-.-+|-+-. .. .-..|+
T Consensus 177 ~~l~~~g~i~d~~~~~IeEyv~G~~~~~~yFySpl~~~lEllg~D~R~esniDg~~rlPa~~qle~~~~p~~vvvGn~p~ 256 (356)
T PRK13278 177 DRLKEKGLIEDVEKYIIQEYVVGVPYYIHYFYSPIKNRLELLGIDRRYESNIDGLVRIPAKDQLEAGIDPTYVVTGNIPL 256 (356)
T ss_pred HHHHHCCCCCCCCCCEEEEEECCCEEEHHHCCCCCCCCEEEEECCEEEEECCHHHCCCCHHHHHHCCCCCCEEEECCCCC
T ss_conf 99886275455544279998347412312203520066136631003440522320488788853689984699888532
Q ss_pred CCHHHHHHHHHHHHHHHHHHC------CCCCEEEEEEEEECCCCEEEEEEECCC------CCCCHHHHHHHHHHHCCCCH
Q ss_conf 211666554444444577534------876457999999768983999974726------58882238999999839998
Q gi|254781179|r 218 KIPLDIYKEVQRLAFLAHQAI------GCRGISRSDFLFDPLSRKVFWLEINVQ------PGMTPVSIFPEMAAYAGYSF 285 (300)
Q Consensus 218 ~l~~~~~~~i~~~a~~~~~al------g~~g~~rvDf~~d~~~g~~~~lEvN~~------PGlt~~s~~p~~~~~~G~s~ 285 (300)
.+-+.+..++-+++.+..++. |+-|....+..+|+ +-++++.||-++ |.|. .|.|....-...+|.
T Consensus 257 vlRESLL~~vf~~ge~fV~a~k~l~~PG~iGPFcLq~vvt~-~le~vvFevS~RIv~GTn~~~~-gSPYs~l~~~epms~ 334 (356)
T PRK13278 257 VLRESLLPQVFEYGERFVEASKELVGPGMIGPFCLESVITD-DLEIVVFEISARIVAGTNLYMN-GSPYSYLYFDEPMSM 334 (356)
T ss_pred EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC-CCEEEEEEEECCCCCCCCCCCC-CCCCCEEECCCCCCH
T ss_conf 44176579999999999999997469986345436689869-8609999985431389887657-998610252786638
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999975
Q gi|254781179|r 286 RELLLWMVEDA 296 (300)
Q Consensus 286 ~~li~~ii~~A 296 (300)
-.=+..=|..|
T Consensus 335 GRRIA~EIk~A 345 (356)
T PRK13278 335 GRRIAREIKLA 345 (356)
T ss_pred HHHHHHHHHHH
T ss_conf 88999999999
No 75
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=98.96 E-value=1.3e-07 Score=68.89 Aligned_cols=269 Identities=14% Similarity=0.102 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCC------------------HHHHH-----H-HCCCCEEEECCCCCCCCCCHHHHHH
Q ss_conf 9999999999987988999615865------------------68888-----7-5399899992548843431023566
Q gi|254781179|r 17 SSGKACASALEDAGFKVSQIDVDRS------------------VGLVL-----A-HLKPDLAFNVLHGNFGEDGLVQAIL 72 (300)
Q Consensus 17 ~S~~~i~~aL~~~g~~v~~id~~~~------------------~~~~l-----~-~~~~D~vf~~lhG~~gEdg~iq~~l 72 (300)
+||.+|++..++.||.+..+..... ....+ . -.+-+.+| .=||.+-.=-.+-++-
T Consensus 27 HSaL~Il~GAK~EGF~Ti~v~~~gr~~~Y~~f~~a~e~i~v~~f~dil~~~iqe~L~~~n~I~-IP~gSfv~Y~G~d~ie 105 (361)
T COG1759 27 HSALQILDGAKEEGFRTIAVCQRGREKPYEKFPVADEVIIVDKFSDILNEEIQEELRELNAIF-IPHGSFVAYVGYDGIE 105 (361)
T ss_pred CHHHHHHHHHHHCCCCEEEEEECCCCCHHHHCCHHHEEEEECHHHHHHHHHHHHHHHHCCEEE-ECCCCEEEEECCHHHH
T ss_conf 047888633776087279998357623676502023488952047776489999998758499-4278647885314464
Q ss_pred HHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHH
Q ss_conf 64321002310023320365001000021210000121320222000122105862564324776421143259899999
Q gi|254781179|r 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 (300)
Q Consensus 73 e~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~~~~~~~~P~ivKP~~ggsS~Gv~~v~~~~el~~ 152 (300)
+.+-+|+.|+...--. -.|...-..+|.++||+.|+-+ ...+.+..|+|||+-.--.++|-+++.+.+|+.+
T Consensus 106 ~~~~vP~fGnR~lLrw-E~~~~~~~~lLekAgi~~P~~~-------~~PeeIdr~ViVK~pgAkggRGyFiA~s~eef~e 177 (361)
T COG1759 106 NEFEVPMFGNRELLRW-EEDRKLEYKLLEKAGLRIPKKY-------KSPEEIDRPVIVKLPGAKGGRGYFIASSPEEFYE 177 (361)
T ss_pred HCCCCCCCCCHHHHHH-HCCHHHHHHHHHHCCCCCCCCC-------CCHHHCCCCEEEECCCCCCCCEEEEECCHHHHHH
T ss_conf 4114661166767530-0033568999997499988566-------9967868736985577667743799769899999
Q ss_pred HHHHHCCCCC-----CCCCCCCCCCCCCEEEEEECCCCCCCEEEEC-------CCCCCCCCCCCCCCC---CCCCC----
Q ss_conf 8863003668-----8542233357884578873144442002202-------554333311000011---22224----
Q gi|254781179|r 153 DLLQSSSWNH-----GDQLLIEQYVDGIELTCGVMGDASLDVTEIA-------VPKSDFYSYELKYSS---LNSTH---- 213 (300)
Q Consensus 153 ~~~~~~~~~~-----~~~vlVEefI~G~E~~v~Vl~~~~~~~~ei~-------~~~~~~~dy~~Ky~~---~~~~~---- 213 (300)
.........- -..+.|||||-|.-+.....-.....-.|+. ..-++++---+|++- -..++
T Consensus 178 k~erl~~~gvi~~Edlkna~IeEYv~G~~f~~~yFyS~i~~~lEl~g~D~R~Esn~Dg~~RlPa~~ql~l~~~ptyvv~G 257 (361)
T COG1759 178 KAERLLKRGVITEEDLKNARIEEYVVGAPFYFHYFYSPIKDRLELLGIDRRYESNLDGLVRLPAKDQLELNLEPTYVVVG 257 (361)
T ss_pred HHHHHHHCCCCCHHHHHHCEEEEEEECCCEEEEEEECCCCCCEEEEEEEHHEECCCHHHCCCCHHHHHHCCCCCEEEEEC
T ss_conf 99999872876534432135447750660134552023457045763002013162121157878997458995289987
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHC------CCCCEEEEEEEEECCCCEEEEEEECC------CCCCCHHHHHHHHHHHC
Q ss_conf 5865211666554444444577534------87645799999976898399997472------65888223899999983
Q gi|254781179|r 214 VLPAKIPLDIYKEVQRLAFLAHQAI------GCRGISRSDFLFDPLSRKVFWLEINV------QPGMTPVSIFPEMAAYA 281 (300)
Q Consensus 214 ~~Pa~l~~~~~~~i~~~a~~~~~al------g~~g~~rvDf~~d~~~g~~~~lEvN~------~PGlt~~s~~p~~~~~~ 281 (300)
..|+.+-+.+..++-+++.+..++. |.-|....+.++++ |=++|+-||-+ +.+|+ .|.+....-..
T Consensus 258 n~p~vlRESLL~~vfe~ger~V~a~kel~~PG~iGpFcLq~i~t~-dl~~vVFevS~Ri~gGTNv~~~-GspYs~l~~~~ 335 (361)
T COG1759 258 NIPVVLRESLLPKVFEMGERFVEATKELVPPGIIGPFCLQTIVTD-DLEFVVFEVSARIVGGTNVYMG-GSPYSNLYWGE 335 (361)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC-CCCEEEEEEECCCCCCCCCCCC-CCCCHHHHCCC
T ss_conf 851324777789999999999999987459985132002001468-7518999975310477665558-98642210378
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 999899999999975
Q gi|254781179|r 282 GYSFRELLLWMVEDA 296 (300)
Q Consensus 282 G~s~~~li~~ii~~A 296 (300)
++|-.+=+..=|..|
T Consensus 336 pms~GrRIA~EIk~A 350 (361)
T COG1759 336 PMSTGRRIAREIKEA 350 (361)
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 753224889999999
No 76
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit; InterPro: IPR005809 There are four different enzymes that share a similar catalytic mechanism which involves the phosphorylation by ATP (or GTP) of a specific histidine residue in the active site. These enzymes are: ATP citrate-lyase (4.1.3.8 from EC) , the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues, catalyzes the formation of acetyl-CoA and oxaloacetate from citrate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. ATP-citrate lyase is a tetramer of identical subunits; Succinyl-CoA ligase (GDP-forming) (6.2.1.4 from EC) is a mitochondrial enzyme that catalyzes the substrate level phosphorylation step of the tricarboxylic acid cycle: the formation of succinyl-CoA from succinate with a concomitant hydrolysis of GTP to GDP and phosphate. This enzyme is a dimer composed of an alpha and a beta subunits; Succinyl-CoA ligase (ADP-forming) (6.2.1.5 from EC) is a bacterial enzyme that during aerobic metabolism functions in the citric acid cycle, coupling the hydrolysis of succinyl-CoA to the synthesis of ATP. It can also function in the other direction for anabolic purposes. This enzyme is a tetramer composed of two alpha and two beta subunits; and Malate-CoA ligase (6.2.1.9 from EC) (malyl-CoA synthetase) , is a bacterial enzyme that forms malyl-CoA from malate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. Malate-CoA ligase is composed of two different subunits. This entry corresponds to a conserved region located in the first half of ATP citrate lyase and in the beta subunits of succinyl-CoA ligases and malate-CoA ligase. ; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=98.91 E-value=1.7e-08 Score=74.51 Aligned_cols=189 Identities=16% Similarity=0.211 Sum_probs=123.4
Q ss_pred CCHHCCCCCCCCEEECCCEEEECCCCCHH--HHHCC-CCEEEEE-CC-CCCCC--CEEEECCHHHHHHHHHHHCCC----
Q ss_conf 50010000212100001213202220001--22105-8625643-24-77642--114325989999988630036----
Q gi|254781179|r 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLIS-PPYVIKP-LK-GGSSL--GIIVIKKDQSIPLDLLQSSSW---- 160 (300)
Q Consensus 92 dK~~~k~~l~~~gIptp~~~~~~~~~~~~--~~~~~-~P~ivKP-~~-ggsS~--Gv~~v~~~~el~~~~~~~~~~---- 160 (300)
+=|.+|++++++|||||++.++++.+... ...++ .+++||. ++ ||=++ ||.+++|.+|+.++.......
T Consensus 4 HEYqAK~if~~YGiPvp~g~v~~s~~e~~~~~~~~g~~~~VvKaQVhaGGRGKAGGv~~a~s~ee~~~~a~~llg~~l~t 83 (389)
T TIGR01016 4 HEYQAKEIFAKYGIPVPEGEVATSVEEVEEIAEELGEGKVVVKAQVHAGGRGKAGGVKVAKSKEEALKAAEKLLGKELKT 83 (389)
T ss_pred CHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHCCEEEE
T ss_conf 43558999984789678860041678999999970799789998773267112157689708799999999870891578
Q ss_pred -------CCCCCCCCCCCCC-CCEEEEEECCCCC--CCE----------------------EEE-CCCCCCCCCCCCCCC
Q ss_conf -------6885422333578-8457887314444--200----------------------220-255433331100001
Q gi|254781179|r 161 -------NHGDQLLIEQYVD-GIELTCGVMGDAS--LDV----------------------TEI-AVPKSDFYSYELKYS 207 (300)
Q Consensus 161 -------~~~~~vlVEefI~-G~E~~v~Vl~~~~--~~~----------------------~ei-~~~~~~~~dy~~Ky~ 207 (300)
..=+++|||+-++ -+||.++++=|+. .|+ ..+ ..|..++++|+.++.
T Consensus 84 ~Qt~~~g~~VnkiliE~~~~I~kEyY~s~v~DR~~~~pv~maS~eGGvdIEEvA~~~Pe~I~k~~idp~~~~~pYq~R~~ 163 (389)
T TIGR01016 84 FQTDPLGQPVNKILIEEKIDIDKEYYLSIVIDRSAKKPVIMASTEGGVDIEEVAEKSPEKIIKVAIDPLTGLLPYQAREL 163 (389)
T ss_pred EECCCCCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHCCCCCEEEEEECCCCCCCCHHHHHH
T ss_conf 64078886344787326774120014779998047871799706778417899521957168887177777787899999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE---EEECCCCEEEEEEECC---------CCCC------C
Q ss_conf 12222458652116665544444445775348764579999---9976898399997472---------6588------8
Q gi|254781179|r 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF---LFDPLSRKVFWLEINV---------QPGM------T 269 (300)
Q Consensus 208 ~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf---~~d~~~g~~~~lEvN~---------~PGl------t 269 (300)
... ..++.++.++..++..++++.+-=++..-+++ .++ ++|.++.++.-- .|-| +
T Consensus 164 a~~------~~l~~~~~~~~~~i~~~Ly~~F~e~Da~L~EINPLViT-~~G~L~alDAKl~~DDnALFRH~~l~~~~D~~ 236 (389)
T TIGR01016 164 AKK------LGLEGELIKQVASIIKKLYQIFLEKDASLVEINPLVIT-KDGNLVALDAKLTIDDNALFRHPDLEEMEDYT 236 (389)
T ss_pred HHH------CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEC-CCCCEEEEEEECCCCCCHHCCCCCHHHHCCCC
T ss_conf 997------08970577889999999999887537102545263687-89888998332244655100671168763888
Q ss_pred HHHHHHHHHHHCCCCHHH
Q ss_conf 223899999983999899
Q gi|254781179|r 270 PVSIFPEMAAYAGYSFRE 287 (300)
Q Consensus 270 ~~s~~p~~~~~~G~s~~~ 287 (300)
+.-..+..|+..|++|=.
T Consensus 237 ~~~~~e~~A~~~gL~Yv~ 254 (389)
T TIGR01016 237 QEDQLEVEAKQLGLNYVK 254 (389)
T ss_pred CCCHHHHHHHHHCCCEEE
T ss_conf 777337999861883688
No 77
>pfam03133 TTL Tubulin-tyrosine ligase family. Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL). The true physiological function of TTL has so far not been established. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness. On the other hand, 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypep
Probab=98.80 E-value=3.2e-07 Score=66.41 Aligned_cols=160 Identities=19% Similarity=0.298 Sum_probs=82.5
Q ss_pred CCCEEEECCCCCHHH----HHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCC------CC-
Q ss_conf 012132022200012----2105862564324776421143259899999886300366885422333578------84-
Q gi|254781179|r 107 VCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD------GI- 175 (300)
Q Consensus 107 tp~~~~~~~~~~~~~----~~~~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~~~~~~~~vlVEefI~------G~- 175 (300)
.|+++.+...-.... ..-+--+|+||..+.-+.||.++++.+++.... ....++||+||+ |+
T Consensus 44 ~P~Tf~Lp~d~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~-------~~~~~VvQkYI~~PlLi~g~K 116 (291)
T pfam03133 44 LPRTFILPTDLGEFVDYFEDNERNTWIVKPSASARGRGIRITNDLSQILKQI-------QSRPLVVQKYIERPLLIDGRK 116 (291)
T ss_pred ECCEEECHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEECCHHHHHHHH-------CCCCEEEEECCCCCCEECCEE
T ss_conf 6889787899999999998689976999117768989969837999976652-------379889752057751066745
Q ss_pred -EEEEEECCCCCCCEEEECCCCCC---------------C---------CCCCCCCCCC--------CCCCC-------C
Q ss_conf -57887314444200220255433---------------3---------3110000112--------22245-------8
Q gi|254781179|r 176 -ELTCGVMGDASLDVTEIAVPKSD---------------F---------YSYELKYSSL--------NSTHV-------L 215 (300)
Q Consensus 176 -E~~v~Vl~~~~~~~~ei~~~~~~---------------~---------~dy~~Ky~~~--------~~~~~-------~ 215 (300)
++.+-|+=... .+..+..-+.+ + ++.+.++... +.... .
T Consensus 117 FDlR~yvLvts~-~Pl~iYly~eg~~R~~s~~Y~~~~~~~~n~~~HLTN~~ink~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (291)
T pfam03133 117 FDIRLYVLVTSV-NPLRVYVYREGLLRFASVKYSPSVSDLDDVEMHLTNYSIQKKSSSLNEDYNEPNGHKWSLFNFWKYL 195 (291)
T ss_pred EEEEEEEEEECC-CCEEEEEECCEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 678999999526-9869999647044610767897546642210121044237664201443112567732199999987
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH-------------CCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 6521166655444444457753-------------48764579999997689839999747265888223899
Q gi|254781179|r 216 PAKIPLDIYKEVQRLAFLAHQA-------------IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 (300)
Q Consensus 216 Pa~l~~~~~~~i~~~a~~~~~a-------------lg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p 275 (300)
...-.+++..+|.++..+.+.+ -+|.-+.++||++|+ +.++|+||||..|.|+.++.+-
T Consensus 196 ~~~~~~~i~~~i~~~i~~~~~a~~~~~~~~~~~~~~~~Fel~G~D~llD~-~~kpwLLEVN~~Psl~~~~~~d 267 (291)
T pfam03133 196 EEKDKEEIWLEIESIIIKTILAAEVEASRLNVQPLYNCFELYGFDFMIDE-NLKPWLLEVNASPSLHSTTKLD 267 (291)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECC-CCCEEEEEEECCCCCCCCCHHH
T ss_conf 46799999999999999999999877523005889975779966599859-9978999997998988898639
No 78
>KOG3895 consensus
Probab=98.33 E-value=2.3e-06 Score=60.84 Aligned_cols=207 Identities=15% Similarity=0.159 Sum_probs=117.3
Q ss_pred HHCCCCEEEECCCCCC---CCCC-HHHHHHHHHHHHCCCCCHHHHHHCCCCH-HCCCC---CCCCE---EECCCEEEECC
Q ss_conf 7539989999254884---3431-0235666432100231002332036500-10000---21210---00012132022
Q gi|254781179|r 47 AHLKPDLAFNVLHGNF---GEDG-LVQAILELLEIPYTHSGILASALSMDKM-RSKQV---VSSCG---VPVCPSILVNR 115 (300)
Q Consensus 47 ~~~~~D~vf~~lhG~~---gEdg-~iq~~le~~~ipy~Gs~~~~~~l~~dK~-~~k~~---l~~~g---Iptp~~~~~~~ 115 (300)
...+||+||.--|-.- +||- .+---|...|||++.|--..-+.| ||. .++++ ..+.| +|..+-.....
T Consensus 152 RsfkPdfVlirqhA~~mA~~~d~rslvig~qyagiP~vNSl~SvynFc-dkpwvf~Qlvki~~slG~e~fPli~qt~yPn 230 (488)
T KOG3895 152 RSFKPDFVLIRQHAFSMALNEDYRSLVIGLQYAGIPSVNSLTSVYNFC-DKPWVFAQLVKITKSLGPEKFPLIEQTFYPN 230 (488)
T ss_pred EECCCCEEEECCCCHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCCCCCCCCEEECCC
T ss_conf 312677788705301010131068999988763786420267898861-4568999999998751854455440010687
Q ss_pred CCCHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CEEEEEECCCCCCCEEEECC
Q ss_conf 20001221058625643247764211432598999998863003668854223335788-45788731444420022025
Q gi|254781179|r 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAV 194 (300)
Q Consensus 116 ~~~~~~~~~~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~~~~~~~~vlVEefI~G-~E~~v~Vl~~~~~~~~ei~~ 194 (300)
.. .-...-.||+|||=..+.++.|-.+|+|..++.. ++...+.. +..+-+|.||+. .++.+.=+|..--..+...+
T Consensus 231 HK-~m~s~~tyPvVVkvghahsGmGKiKV~Nh~dfqD-i~svval~-~Tyat~epFiDaKYDiriQKIG~nYKaymRtsI 307 (488)
T KOG3895 231 HK-EMLSQPTYPVVVKVGHAHSGMGKIKVENHEDFQD-IASVVALT-KTYATAEPFIDAKYDIRIQKIGHNYKAYMRTSI 307 (488)
T ss_pred CH-HHCCCCCCCEEEEECCCCCCCCEEEECCHHHHHH-HHHHHHHH-HHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHH
T ss_conf 44-2214887767998254335653255234155676-99999988-623200234343220015654046888866531
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECC--CCCCCH
Q ss_conf 543333110000112222458652116-6655444444457753487645799999976898399997472--658882
Q gi|254781179|r 195 PKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV--QPGMTP 270 (300)
Q Consensus 195 ~~~~~~dy~~Ky~~~~~~~~~Pa~l~~-~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~--~PGlt~ 270 (300)
.++ | |-+.++. -|.. ...++-+.+...+-+.+|.-++|-||.... ++|+=|++|||- +|-+..
T Consensus 308 sgn-W-----KtNtGSa------mLEQIamseRyklwvdtcse~fGgldICav~alhs-KdGrd~i~eV~d~smpliGe 373 (488)
T KOG3895 308 SGN-W-----KTNTGSA------MLEQIAMSERYKLWVDTCSEMFGGLDICAVKALHS-KDGRDYIIEVMDSSMPLIGE 373 (488)
T ss_pred CCC-C-----CCCCHHH------HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC-CCCHHHEEEECCCCCCCCCC
T ss_conf 267-5-----4572089------99999877889999998997628832466542105-65502324312354322242
No 79
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=98.33 E-value=5.1e-06 Score=58.65 Aligned_cols=163 Identities=18% Similarity=0.227 Sum_probs=98.7
Q ss_pred CCHHCCCCCCCCEEECCCEEEECCCCCH--HHHHCCCC-EEEEE-CC-CCC--CCCEEEECCHHHHHHHHHHHCCCCC--
Q ss_conf 5001000021210000121320222000--12210586-25643-24-776--4211432598999998863003668--
Q gi|254781179|r 92 DKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPP-YVIKP-LK-GGS--SLGIIVIKKDQSIPLDLLQSSSWNH-- 162 (300)
Q Consensus 92 dK~~~k~~l~~~gIptp~~~~~~~~~~~--~~~~~~~P-~ivKP-~~-ggs--S~Gv~~v~~~~el~~~~~~~~~~~~-- 162 (300)
.-+..|++|+++|||+|++.++.+.+.. ....+++| +|||. +. ||= .=||.++++.+|+.....+......
T Consensus 4 hEyqaKell~~~gIpvp~g~v~~~~~ea~~~~~~l~~~~~VvKAQV~aGGRGKaGGVk~~~s~~ea~~~a~~ilg~~lvT 83 (388)
T PRK00696 4 HEYQAKELLAEYGVPVPRGYVAFTPEEAVEAAEELGGPVWVVKAQVHAGGRGKAGGVKVAKSKEEVRAAAEEILGKDLVT 83 (388)
T ss_pred HHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCE
T ss_conf 48999999998699899973779999999999982999589998054588886860799089999999999985677421
Q ss_pred ---------CCCCCCCCCCCC-CEEEEEECCCCCCC-EEEECCCCC------------------------CCCCCCCCCC
Q ss_conf ---------854223335788-45788731444420-022025543------------------------3331100001
Q gi|254781179|r 163 ---------GDQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKS------------------------DFYSYELKYS 207 (300)
Q Consensus 163 ---------~~~vlVEefI~G-~E~~v~Vl~~~~~~-~~ei~~~~~------------------------~~~dy~~Ky~ 207 (300)
-..+||||-++- +||.++++=|+... ++-+.-+.+ ++.+|+++..
T Consensus 84 ~QTg~~G~~V~~vlvee~~~i~~E~Ylsi~~DR~~~~~~~i~S~~GG~dIEevA~~~Pe~I~k~~idp~~gl~~~~~r~i 163 (388)
T PRK00696 84 HQTGPEGQPVNRLLIEEGADIAKELYLSAVVDRATRRVVFMASTEGGMEIEEVAEETPEKIHKVAVDPLVGLQPYQAREI 163 (388)
T ss_pred ECCCCCCCEEEEEEEEECCCHHHHEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCHHHEEEEECCCCCCCCHHHHHHH
T ss_conf 01588884447999875166124068999986477857999988879879998652912389997577779899999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE---EEECCCCEEEEEE
Q ss_conf 12222458652116665544444445775348764579999---9976898399997
Q gi|254781179|r 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF---LFDPLSRKVFWLE 261 (300)
Q Consensus 208 ~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf---~~d~~~g~~~~lE 261 (300)
.....++.+..++..++..++|+++--.+..-+++ .++ .+|+++-++
T Consensus 164 ------~~~lgl~~~~~~~~~~ii~~Ly~~F~~~Da~LvEINPLv~t-~dg~~ialD 213 (388)
T PRK00696 164 ------AFKLGLPGEQVKQAVKIFMGLYKAFVEKDASLVEINPLVVT-KDGDLLALD 213 (388)
T ss_pred ------HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEC-CCCCEEEEE
T ss_conf ------99829999999999999999999999659742561242686-899789988
No 80
>TIGR01380 glut_syn glutathione synthase; InterPro: IPR006284 These are the glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions. ; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process.
Probab=98.31 E-value=5.4e-06 Score=58.51 Aligned_cols=258 Identities=14% Similarity=0.147 Sum_probs=151.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC-----------------------CHHHH-------------HHHC-CC
Q ss_conf 71278899999999999998798899961586-----------------------56888-------------8753-99
Q gi|254781179|r 9 SSEREVSLSSGKACASALEDAGFKVSQIDVDR-----------------------SVGLV-------------LAHL-KP 51 (300)
Q Consensus 9 s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~-----------------------~~~~~-------------l~~~-~~ 51 (300)
...||.|. ++..+.++.||++....+++ +..|. +.-. +.
T Consensus 14 ~~~~D~t~----alm~EaQ~RgH~~f~~~~~~Ls~~~G~~~A~~~~~~~~pv~~~~~~WQv~~~w~~~~~~~~~~L~d~~ 89 (322)
T TIGR01380 14 KIGKDTTF----ALMEEAQKRGHELFFYEPGDLSVKNGRVFARAAPVKVLPVQLDDDRWQVKQDWYTLGEKVRLALKDEL 89 (322)
T ss_pred CCCCCCHH----HHHHHHHHCCCEEEEEECCCEEEECCHHHEEEEEEEEEEEEECCCCCEECHHHHHHHHHHHHCCCCCC
T ss_conf 37867079----99989854693899984361111023111002106686058718801011278887665420113574
Q ss_pred CEEEECCCCCCC----CCCHHHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCHHHHHCC-C
Q ss_conf 899992548843----43102356664321002310023320365001000021210000121320222000122105-8
Q gi|254781179|r 52 DLAFNVLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-P 126 (300)
Q Consensus 52 D~vf~~lhG~~g----Edg~iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~~~~~~~-~ 126 (300)
|+||=-=-.++- -+..+=.+++..|+-.+ ++|.+.+-+--|..+..+-+ =+||+.+-.+.....+-.-. .
T Consensus 90 d~vlMRkDPPf~~~Y~yaT~lLe~~~~~g~~vi-N~P~~lRd~NEKl~~~~Fp~----~~ppTLvt~~~~~ir~F~~e~~ 164 (322)
T TIGR01380 90 DVVLMRKDPPFDMEYIYATYLLELAEPTGTLVI-NSPQGLRDANEKLFALQFPK----VIPPTLVTRDKAEIRAFLAEHG 164 (322)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEE-ECCCHHHCCCHHHHHHCCCC----CCCCCCEECCHHHHHHHHHHHH
T ss_conf 299984750986315446778877842796798-48823224660345433412----3588501067799999998751
Q ss_pred CEEEEECCCCCCCCEEEECC-HHHHHHHHHHHCCCCCCCCCCCCCCCCCC---EEEEEECCCCCCC-EEEECCCCCCCCC
Q ss_conf 62564324776421143259-89999988630036688542233357884---5788731444420-0220255433331
Q gi|254781179|r 127 PYVIKPLKGGSSLGIIVIKK-DQSIPLDLLQSSSWNHGDQLLIEQYVDGI---ELTCGVMGDASLD-VTEIAVPKSDFYS 201 (300)
Q Consensus 127 P~ivKP~~ggsS~Gv~~v~~-~~el~~~~~~~~~~~~~~~vlVEefI~G~---E~~v~Vl~~~~~~-~~ei~~~~~~~~d 201 (300)
-.|+||..|.++.||..... +-++...++ .........+++|.||+-. +=.|-++++..++ ++......++|
T Consensus 165 divLKPL~g~GG~gi~Rl~~~DpN~~~i~E-~~~~~g~~~~~aQ~ylpei~~GDKRilL~~G~Pig~a~~Rip~~gE~-- 241 (322)
T TIGR01380 165 DIVLKPLDGMGGEGIFRLDPGDPNLNSILE-TLTQLGREPVMAQRYLPEIKEGDKRILLIDGEPIGYAVARIPAGGEF-- 241 (322)
T ss_pred CEEECCCCCCCCCEEEEECCCCCCHHHHHH-HHHHCCCCEEEEEECHHHHHHCCCEEEEECCEECCCCEEECCCCCCC--
T ss_conf 258726667778436761789985568988-87652671687650205766179659997883500101402788750--
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC--EEEEEEEEECCCCEEEEEEEC-CCCCCCHHHHHHHHH
Q ss_conf 10000112222458652116665544444445775348764--579999997689839999747-265888223899999
Q gi|254781179|r 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG--ISRSDFLFDPLSRKVFWLEIN-VQPGMTPVSIFPEMA 278 (300)
Q Consensus 202 y~~Ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~g--~~rvDf~~d~~~g~~~~lEvN-~~PGlt~~s~~p~~~ 278 (300)
+..-..|+... ..++.++=+++|..+.=.|.=+| ++++|.+ |. |+.||| |.| ..+-..-
T Consensus 242 -RgNlavGG~~~------a~~L~~rD~eIc~~~~P~L~~rGl~fvGiDVI-----G~-~LTEvNVTSP-----TGi~Ei~ 303 (322)
T TIGR01380 242 -RGNLAVGGRGE------AQELSERDREICATVAPELKRRGLLFVGIDVI-----GG-YLTEVNVTSP-----TGIREID 303 (322)
T ss_pred -CHHHCCCCEEE------ECCCCHHHHHHHHHHCCCCCCCCEEEEEEEEE-----CC-CCEEEECCCC-----HHHHHHH
T ss_conf -00200288622------00266789999987161002077479754677-----78-0079831464-----5689887
Q ss_pred HHCCCCHHHHHHHHHHHH
Q ss_conf 983999899999999975
Q gi|254781179|r 279 AYAGYSFRELLLWMVEDA 296 (300)
Q Consensus 279 ~~~G~s~~~li~~ii~~A 296 (300)
+..|++-++.+-.-|+..
T Consensus 304 ~~~G~~~~~~~~d~~E~~ 321 (322)
T TIGR01380 304 RQKGVNIAEQLIDAIEKA 321 (322)
T ss_pred HHCCCCHHHHHHHHHHHC
T ss_conf 635855899999998740
No 81
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=98.27 E-value=1e-05 Score=56.81 Aligned_cols=165 Identities=17% Similarity=0.224 Sum_probs=99.4
Q ss_pred CCHHCCCCCCCCEEECCCEEEECCCCCHH--HHHCC-CCEEEEEC--CCCC--CCCEEEECCHHHHHHHHHHHCC----C
Q ss_conf 50010000212100001213202220001--22105-86256432--4776--4211432598999998863003----6
Q gi|254781179|r 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLIS-PPYVIKPL--KGGS--SLGIIVIKKDQSIPLDLLQSSS----W 160 (300)
Q Consensus 92 dK~~~k~~l~~~gIptp~~~~~~~~~~~~--~~~~~-~P~ivKP~--~ggs--S~Gv~~v~~~~el~~~~~~~~~----~ 160 (300)
.-+..|++++++|||+|++......+... ...++ .|++||+- .||= +=||.+++|.+|...+.....- .
T Consensus 4 hEYqaKelf~~~GiPvp~g~v~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~ 83 (387)
T COG0045 4 HEYQAKELFAKYGIPVPPGYVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQT 83 (387)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEECCHHHHHHHHHHHHCCCCCC
T ss_conf 88889989997299899954540899999999981899679992253057666676688389899999999984866545
Q ss_pred C----CCCCCCCCCCCC-CC-EEEEEECCCCCC--CEE--------EE---------------CCCCCCCCCCCCCCCCC
Q ss_conf 6----885422333578-84-578873144442--002--------20---------------25543333110000112
Q gi|254781179|r 161 N----HGDQLLIEQYVD-GI-ELTCGVMGDASL--DVT--------EI---------------AVPKSDFYSYELKYSSL 209 (300)
Q Consensus 161 ~----~~~~vlVEefI~-G~-E~~v~Vl~~~~~--~~~--------ei---------------~~~~~~~~dy~~Ky~~~ 209 (300)
. .-+.+|||++.+ -. ||.++++=|+.. |+. +| ..|..++.+|+++...
T Consensus 84 ~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~~~S~eGGmDIEeVa~~~PekI~~~~idp~~g~~~~~aR~la- 162 (387)
T COG0045 84 DIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVLMASTEGGMDIEEVAEKTPEKIVKVSVDPLTGLRPYQARELA- 162 (387)
T ss_pred CCCCCEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCHHHEEEEEECCCCCCCHHHHHHHH-
T ss_conf 7688454289997467776433799999973778379999667795189950028345268974776687877999999-
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE---EEECCCCEEEEEEE
Q ss_conf 222458652116665544444445775348764579999---99768983999974
Q gi|254781179|r 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF---LFDPLSRKVFWLEI 262 (300)
Q Consensus 210 ~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf---~~d~~~g~~~~lEv 262 (300)
.-..++.++.++..++-.+.|+.+--++..-+++ .++..+|+++-++.
T Consensus 163 -----~~lgl~~~~~~~~~~ii~~ly~~f~~~Da~lvEINPLvvt~~~g~v~aLDa 213 (387)
T COG0045 163 -----FKLGLEGELVKQVADIIKKLYKLFVEKDATLVEINPLVVTPDGGDVLALDA 213 (387)
T ss_pred -----HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEECCCCCEEEEEE
T ss_conf -----974998789999999999999999975876787525088179980899764
No 82
>pfam08442 ATP-grasp_2 ATP-grasp domain.
Probab=98.22 E-value=8.4e-06 Score=57.29 Aligned_cols=95 Identities=20% Similarity=0.234 Sum_probs=68.1
Q ss_pred CCHHCCCCCCCCEEECCCEEEECCCCCH--HHHHCCC-CEEEEEC--CCCC--CCCEEEECCHHHHHHHHHHHCCCC---
Q ss_conf 5001000021210000121320222000--1221058-6256432--4776--421143259899999886300366---
Q gi|254781179|r 92 DKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISP-PYVIKPL--KGGS--SLGIIVIKKDQSIPLDLLQSSSWN--- 161 (300)
Q Consensus 92 dK~~~k~~l~~~gIptp~~~~~~~~~~~--~~~~~~~-P~ivKP~--~ggs--S~Gv~~v~~~~el~~~~~~~~~~~--- 161 (300)
+-+..|++|+++|||+|++.++++.+.. ....++. |+|||+- .||- +-||.++++.+|+...........
T Consensus 3 hEyqaK~ll~~~gIpvp~g~~~~~~~ea~~~~~~l~~~~~VvKaQv~aGGRGKaGGVk~~~~~~ea~~~a~~~lg~~l~T 82 (202)
T pfam08442 3 HEYQAKEILAKYGVPVPRGEVAFSPEEAEEIAKKLGGKVYVVKAQVLAGGRGKAGGVKLAKSPEEAKEAAKEMLGKNLVT 82 (202)
T ss_pred CHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHCCCEEEE
T ss_conf 38899999998599899915969999999999980998699987423588876773899789999999999872977875
Q ss_pred --------CCCCCCCCCCCCC-CEEEEEECCCCC
Q ss_conf --------8854223335788-457887314444
Q gi|254781179|r 162 --------HGDQLLIEQYVDG-IELTCGVMGDAS 186 (300)
Q Consensus 162 --------~~~~vlVEefI~G-~E~~v~Vl~~~~ 186 (300)
.-+.++|||.++- +||.++++-|+.
T Consensus 83 ~QTg~~G~~V~~vlvee~~~i~~E~Ylsi~~DR~ 116 (202)
T pfam08442 83 KQTGPEGKPVNKVLVEEAVDIAREYYLSIVLDRA 116 (202)
T ss_pred EECCCCCCEEEEEEEEECCCCCCEEEEEEEECCC
T ss_conf 5027889623389998515401007999997577
No 83
>pfam02750 Synapsin_C Synapsin, ATP binding domain. Ca dependent ATP binding in this ATP grasp fold. Function unknown.
Probab=97.72 E-value=0.00068 Score=45.03 Aligned_cols=149 Identities=9% Similarity=0.104 Sum_probs=90.9
Q ss_pred CCEEECCCEEEECCCCCHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CEEEEE
Q ss_conf 2100001213202220001221058625643247764211432598999998863003668854223335788-457887
Q gi|254781179|r 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCG 180 (300)
Q Consensus 102 ~~gIptp~~~~~~~~~~~~~~~~~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~~~~~~~~vlVEefI~G-~E~~v~ 180 (300)
+.+.|--+..+..+... -...-.||+|||--+..++.|-.++.|..++.+.. ...+ .....+-.|+||+. .++.+.
T Consensus 28 ~e~FPLIeQtyypn~ke-m~~~~~fPvVvKvGhah~G~GKvkven~~~fqD~~-s~va-~~~~y~T~EPfid~kyDiriQ 104 (203)
T pfam02750 28 AEKFPLIEQTYYPNHKE-MLTTPTFPVVVKIGHAHSGMGKVKVDNHHDFQDIA-SVVA-LTKTYATTEPFIDSKYDIRVQ 104 (203)
T ss_pred CCCCCCCEEECCCCHHH-HCCCCCCCEEEEECCCCCCEEEEEECCHHHHHHHH-HHHH-HCCCEEEECCCCCCCEEEEEE
T ss_conf 66677530002698777-42588988899975415623589960777888887-5772-136358861454542558852
Q ss_pred ECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEE
Q ss_conf 31444420022025543333110000112222458652116665544444445775348764579999997689839999
Q gi|254781179|r 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 (300)
Q Consensus 181 Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~l 260 (300)
-+|+.--.-+.-.+.++ |.+ +.|+... .++ .+.++-+..+-.+.+.+|.-+.+.||.+.. ++|+-|++
T Consensus 105 KIG~~ykay~R~sISgn----WK~--NtGSamL---Eqi--~mteryK~WvD~~S~lFGGLdIcav~ai~~-KdGkeyIi 172 (203)
T pfam02750 105 KIGNNYKAYMRTSISGN----WKA--NTGSAML---EQI--AMSERYKLWVDTCSEMFGGLDICAVEALHG-KDGRDYII 172 (203)
T ss_pred EHHHHHHHHEECCCCCC----CCC--CCCHHHH---HHH--HHHHHHHHHHHHHHHHCCCCEEEEEEEEEC-CCCCEEEE
T ss_conf 00004476612200378----544--7037888---650--236899999999998738930799987776-88875689
Q ss_pred EECCC
Q ss_conf 74726
Q gi|254781179|r 261 EINVQ 265 (300)
Q Consensus 261 EvN~~ 265 (300)
|||-.
T Consensus 173 Evnds 177 (203)
T pfam02750 173 EVMDS 177 (203)
T ss_pred EECCC
T ss_conf 96265
No 84
>KOG1057 consensus
Probab=97.69 E-value=1.4e-05 Score=55.81 Aligned_cols=179 Identities=17% Similarity=0.193 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCHH---------------HHHCCCCEEEEE
Q ss_conf 23566643210023100233203650010000212100001213202220001---------------221058625643
Q gi|254781179|r 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------------QHLISPPYVIKP 132 (300)
Q Consensus 68 iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~~---------------~~~~~~P~ivKP 132 (300)
.+++. .+.-||+=.+..-.-+-+|+-...++|...||++|++.+++++.... -+.+.-|+|=||
T Consensus 107 AiaY~-kLRnPFviNdL~mQyll~DRR~Vy~iLe~~gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVEKP 185 (1018)
T KOG1057 107 AVAYA-KLRNPFVINDLDMQYLLQDRREVYSILEAEGIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVEKP 185 (1018)
T ss_pred HHHHH-HHCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCCEEEECCEECCCCCCCCC
T ss_conf 99999-86488333241188999889999999997087775167623899886776532378727776636047754688
Q ss_pred CCCCCCCCEEEEC------CHHHHHHHHHHHC-------CCCCCCCCCCCCCCC--CCEEEEEECCCC-------CCCEE
Q ss_conf 2477642114325------9899999886300-------366885422333578--845788731444-------42002
Q gi|254781179|r 133 LKGGSSLGIIVIK------KDQSIPLDLLQSS-------SWNHGDQLLIEQYVD--GIELTCGVMGDA-------SLDVT 190 (300)
Q Consensus 133 ~~ggsS~Gv~~v~------~~~el~~~~~~~~-------~~~~~~~vlVEefI~--G~E~~v~Vl~~~-------~~~~~ 190 (300)
+++-. -.|.+.. .-..|-..+...- .-+.-+.+|-|||++ |.+.-|--+|.. .-|++
T Consensus 186 Vs~ED-HNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTVGp~YaHAEaRKSPvv 264 (1018)
T KOG1057 186 VSAED-HNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPVV 264 (1018)
T ss_pred CCCCC-CCEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEHHHHCCCCCCCCEEEEECCCHHHHHHCCCCCC
T ss_conf 77665-50799824778860789999865656544875344454531101105789862037860730233665038653
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCC
Q ss_conf 202554333311000011222245865211666554444444577534876457999999768983999974726
Q gi|254781179|r 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 (300)
Q Consensus 191 ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~ 265 (300)
.-.+. ..+.+.....|..|++ +-+++|.+++-|++- -.+++|.+- .+|+-|+++||-.
T Consensus 265 DGkV~----------Rns~GKEvRYpv~Ls~----~EK~iA~KVciAF~Q-~VCGFDLLR--a~G~SYVcDVNGf 322 (1018)
T KOG1057 265 DGKVE----------RNSDGKEVRYPVILNS----SEKQIARKVCIAFKQ-TVCGFDLLR--ANGKSYVCDVNGF 322 (1018)
T ss_pred CCEEE----------ECCCCCEEECEEECCH----HHHHHHHHHHHHCCC-CCCCHHHHH--CCCCEEEEECCCE
T ss_conf 64353----------1588761422253382----667777688864256-666567762--3781699941660
No 85
>KOG2156 consensus
Probab=97.41 E-value=0.00052 Score=45.79 Aligned_cols=69 Identities=17% Similarity=0.280 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHH----------------CCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 66655444444457753----------------48764579999997689839999747265888223899999983999
Q gi|254781179|r 221 LDIYKEVQRLAFLAHQA----------------IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 (300)
Q Consensus 221 ~~~~~~i~~~a~~~~~a----------------lg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s 284 (300)
+.+-.+|+++..+++.+ ..|..+.|+|+++|+ +=.+|++|||-.|.++.. +|.-+..
T Consensus 440 ~kIW~qir~iV~kti~s~E~~i~~~lr~~~~~~~~CfELfgFDiilDe-dLkpwLlEVNISPSLhS~--tpld~~v---- 512 (662)
T KOG2156 440 DKIWEQIRNIVIKTIISGEKGINSMLRNYVENPYSCFELFGFDIILDE-DLKPWLLEVNISPSLHSE--TPLDCSV---- 512 (662)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHCCEEEECC-CCCEEEEEEECCCCCCCC--CCCCCHH----
T ss_conf 999999999999976506714999999986087304023250178427-664334787405010247--8753114----
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999999975
Q gi|254781179|r 285 FRELLLWMVEDA 296 (300)
Q Consensus 285 ~~~li~~ii~~A 296 (300)
+..|+...+..|
T Consensus 513 k~~li~~vlNla 524 (662)
T KOG2156 513 KAPLIQDVLNLA 524 (662)
T ss_pred HHHHHHHHHHHC
T ss_conf 558999999860
No 86
>KOG2157 consensus
Probab=96.85 E-value=0.0034 Score=40.56 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=32.9
Q ss_pred CCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHH---CCCCCCCCCCCCCCCC
Q ss_conf 0586256432477642114325989999988630---0366885422333578
Q gi|254781179|r 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS---SSWNHGDQLLIEQYVD 173 (300)
Q Consensus 124 ~~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~---~~~~~~~~vlVEefI~ 173 (300)
-....|+||+...-+.||.++++.+++....... .....+....|..||+
T Consensus 198 ~~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~~s~~~~~~~vv~~yi~ 250 (497)
T KOG2157 198 ERSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSFISENNDEGYVVSAYID 250 (497)
T ss_pred CCCEEEECCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCEEEEECC
T ss_conf 46668964432101652688623566565431233323323334424431026
No 87
>pfam00289 CPSase_L_chain Carbamoyl-phosphate synthase L chain, N-terminal domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=95.62 E-value=0.033 Score=34.20 Aligned_cols=67 Identities=13% Similarity=0.099 Sum_probs=47.0
Q ss_pred HHHHHHHHHHCCCEEEEECCCCC-----------------------------HHHHHHHCCCCEEEECCCCCCCCCCHHH
Q ss_conf 99999999987988999615865-----------------------------6888875399899992548843431023
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRS-----------------------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQ 69 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~-----------------------------~~~~l~~~~~D~vf~~lhG~~gEdg~iq 69 (300)
+.++.++++++|++++.+..+.+ +.....+.+.|.++|= .|...|+-.++
T Consensus 13 A~ri~rt~re~gi~~v~i~s~~d~~s~~~~~ad~~~~~~~~~~~~~Yl~~~~Ii~ia~~~~~~aihpG-yGflsEn~~fa 91 (109)
T pfam00289 13 AVRIIRALRELGIETVAVNSNPDTVSTHVRLADEAYFLGPGPASESYLNIERILDIAEKEGADAIHPG-YGFLSENAEFA 91 (109)
T ss_pred HHHHHHHHHHCCCCEEEEECHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEECC-CCCCCCCHHHH
T ss_conf 99999999986997999963344152256650576534799832111379999999998188968779-76233599999
Q ss_pred HHHHHHHHHCCCCCHHH
Q ss_conf 56664321002310023
Q gi|254781179|r 70 AILELLEIPYTHSGILA 86 (300)
Q Consensus 70 ~~le~~~ipy~Gs~~~~ 86 (300)
..++..|+.|+||++.+
T Consensus 92 ~~~~~~Gi~fiGPs~~~ 108 (109)
T pfam00289 92 EACEKAGITFIGPSPEA 108 (109)
T ss_pred HHHHHCCCEEECCCHHH
T ss_conf 99998889899958354
No 88
>TIGR01435 glu_cys_lig_rel putative glutamate--cysteine ligase/putative amino acid ligase; InterPro: IPR006335 This entry represents a family with an N-terminal region similar to proteobacterial glutamate-cysteine ligase (gamma-glutamylcysteine synthetase). The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria, and (shown by PSI-BLAST) to D-alanine-D-alanine ligases. Cyanophycin is a storage molecule composed of arginine, aspartic acid, and some glutamic acid. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced , and in proteobacterium Pasteurella multocida.; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process.
Probab=95.09 E-value=0.008 Score=38.19 Aligned_cols=189 Identities=20% Similarity=0.257 Sum_probs=105.7
Q ss_pred HHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCHHHH--HCC-CCEEEEECCCCCCCCEEEECCHHH-HHHHHHHH-CCC
Q ss_conf 3320365001000021210000121320222000122--105-862564324776421143259899-99988630-036
Q gi|254781179|r 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LIS-PPYVIKPLKGGSSLGIIVIKKDQS-IPLDLLQS-SSW 160 (300)
Q Consensus 86 ~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~~~~--~~~-~P~ivKP~~ggsS~Gv~~v~~~~e-l~~~~~~~-~~~ 160 (300)
...+..||..+|.++.++|..+|....+......... .+. -.+++||....-+.|..+..+... ++...... .++
T Consensus 484 ~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~g~~~~~~~~~~~~d~~~~~~~~~ 563 (754)
T TIGR01435 484 SPLLLENKVVTKKVLAEAGFNVPGGDEFSSLALALEAFLLFENKAFVVKPKSTNYGLGTTIFKEGFTNLEDFAEALRNAF 563 (754)
T ss_pred EEEEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 20000112577888876045576653046788888888764133003323544443312344302210567899998764
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCEE----------------EECCCC----------------------------
Q ss_conf 688542233357884578873144442002----------------202554----------------------------
Q gi|254781179|r 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVT----------------EIAVPK---------------------------- 196 (300)
Q Consensus 161 ~~~~~vlVEefI~G~E~~v~Vl~~~~~~~~----------------ei~~~~---------------------------- 196 (300)
..+..+++++|++|.|+...++++....+. ++...+
T Consensus 564 ~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~gd~~~~~~~~~~~~~~~p~~g~~~~~p~~~~~~~~~~~~~~~ 643 (754)
T TIGR01435 564 KEDSEVLVEEFLPGTEYRFFLLGDEVEAVLLRVPANVTGDGKHTVEELVAEKNDDPLRGTGHRKPLEKALGPDLEKLLLK 643 (754)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 20013433331157621677635415667765044323540467999986305665566642111456532246777765
Q ss_pred -CCCCCC--CCC----CCCCCCC--CCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCE-------EEE
Q ss_conf -333311--000----0112222--45865-211666554444444577534876457999999768983-------999
Q gi|254781179|r 197 -SDFYSY--ELK----YSSLNST--HVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK-------VFW 259 (300)
Q Consensus 197 -~~~~dy--~~K----y~~~~~~--~~~Pa-~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~-------~~~ 259 (300)
.++-++ ..+ |....+. .--.. +.++++.+..++++..+..+++. ..+.+|+++-..+.. +-+
T Consensus 644 ~~~~~~~~~p~~~~~~~~~~~~~~~~ggd~~d~~~~~~~~~~~~~~~~~~~~~~-~~cg~d~~~p~~~~~~~~~~~~~g~ 722 (754)
T TIGR01435 644 EQGLTWDSVPSKEQLVYLRENSNVSTGGDSIDYTDELDDSYKELAVGATKALGA-AVCGVDLILPDEDDPGTPDLLTWGI 722 (754)
T ss_pred HHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHCCCCEECCCCCCCCCCCHHHHHH
T ss_conf 405630124533567776522554456653210345556677777777887665-4404100203533445531001000
Q ss_pred EEECCCCCCCHHHHHHH
Q ss_conf 97472658882238999
Q gi|254781179|r 260 LEINVQPGMTPVSIFPE 276 (300)
Q Consensus 260 lEvN~~PGlt~~s~~p~ 276 (300)
+|.|-.|.+..+ .||.
T Consensus 723 ~~~~~~p~~~~~-~~p~ 738 (754)
T TIGR01435 723 VEANFNPALHLH-CFPY 738 (754)
T ss_pred HHCCCCCHHHHH-CCCC
T ss_conf 000345112210-0223
No 89
>pfam06849 DUF1246 Protein of unknown function (DUF1246). This family represents the N-terminus of a number of hypothetical archaeal proteins of unknown function.
Probab=94.92 E-value=0.048 Score=33.17 Aligned_cols=92 Identities=13% Similarity=0.189 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCC------------------HHHHHH------HCCCCEEEECCCCCCCCCCHHHHHH
Q ss_conf 9999999999987988999615865------------------688887------5399899992548843431023566
Q gi|254781179|r 17 SSGKACASALEDAGFKVSQIDVDRS------------------VGLVLA------HLKPDLAFNVLHGNFGEDGLVQAIL 72 (300)
Q Consensus 17 ~S~~~i~~aL~~~g~~v~~id~~~~------------------~~~~l~------~~~~D~vf~~lhG~~gEdg~iq~~l 72 (300)
+||.+|++..++.|+++..+..... ....+. -.+-+.+| +=||.+-+=-....+.
T Consensus 7 HSALqIl~GAK~EGF~Tv~vc~~gr~~~Y~~f~~~De~iv~d~f~di~~~~~q~~L~~~N~I~-IPhgSfv~Y~G~~~ie 85 (124)
T pfam06849 7 HSALQILDGAKDEGFRTVAVCQKGREKFYRRFPFVDEFIVVDKFKDILDEEVQQKLRENNAIF-IPHGSFVAYVGYDRVE 85 (124)
T ss_pred CHHHHHHHHHHHCCCCEEEEEECCCCCHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHCCEEE-ECCCCEEEEECHHHHH
T ss_conf 039899723887399578998179752133268673799956589987299999999889799-7488846765589986
Q ss_pred HHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCE
Q ss_conf 64321002310023320365001000021210000121
Q gi|254781179|r 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 (300)
Q Consensus 73 e~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~ 110 (300)
..+.+|+.|+.-.= .--.|+..-+++|.++|||+|+-
T Consensus 86 ~~~~VP~FGNR~lL-rwEseR~~~~~lLe~Agi~~Pk~ 122 (124)
T pfam06849 86 NEFKVPIFGNRNLL-RWESERDKERKLLEKAGIRYPKK 122 (124)
T ss_pred HCCCCCEECCHHHH-HHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 02788700478888-87653677999999769999835
No 90
>pfam07065 D123 D123. This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate. D123 proteins are regulators of eIF2, the central regulator of translational initiation.
Probab=94.57 E-value=0.34 Score=27.74 Aligned_cols=135 Identities=13% Similarity=0.136 Sum_probs=79.0
Q ss_pred HHHHCCCCEEEEECCCC---CC----CCEEEECCHHHHHHHHHHHC--------CC----------CCCCCCCCCCCC--
Q ss_conf 12210586256432477---64----21143259899999886300--------36----------688542233357--
Q gi|254781179|r 120 SQHLISPPYVIKPLKGG---SS----LGIIVIKKDQSIPLDLLQSS--------SW----------NHGDQLLIEQYV-- 172 (300)
Q Consensus 120 ~~~~~~~P~ivKP~~gg---sS----~Gv~~v~~~~el~~~~~~~~--------~~----------~~~~~vlVEefI-- 172 (300)
..+.+|.-++.|=++.. ++ -+-.+|++.+++-..++... ++ ......++-+|.
T Consensus 79 aI~elGG~VfPKLNWSAPkDA~WI~~~nsLkC~~~~DvyLLLKSSdfi~hDL~~af~~c~d~~~~~~~~~~LvLrkw~~l 158 (297)
T pfam07065 79 AIEELGGSVFPKLNWSAPKDATWILPNNSLKCRTLSDVYLLLKSSDFITHDLTHAYDECIDDSPDPSISYELVLRKWYDL 158 (297)
T ss_pred HHHHCCCEEEEECCCCCCCCCEEECCCCCEEECCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCC
T ss_conf 99970880565236789776304346894375569999998730047777787676422456767887717998521457
Q ss_pred -CCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHHHCCCCCEEEEEEEE
Q ss_conf -88457887314444200220255433331100001122224586521166655444444-4577534876457999999
Q gi|254781179|r 173 -DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLF 250 (300)
Q Consensus 173 -~G~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~l~~~~~~~i~~~a-~~~~~alg~~g~~rvDf~~ 250 (300)
++.||.|.|-++.-+.+.... -.+|+|-. ++.+++...|++.- .++...+....|. +|+-+
T Consensus 159 ~p~~EFRcFVr~~~li~IsQRd---~nyy~~L~-------------~~~~~i~~~I~~Ff~~~i~~~fp~~~yv-fDVYi 221 (297)
T pfam07065 159 NPALEFRCFVKNNKLVGISQRD---LNYYEYLA-------------ELKEDIKDAIQEFFEEKILPHFPDDDYV-FDVYI 221 (297)
T ss_pred CCCCEEEEEEECCEEEEEECCC---CCHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHCCCCCEE-EEEEE
T ss_conf 8662788999878899984364---50777788-------------7799999999999999987437888879-99996
Q ss_pred ECCCCEEEEEEECCCCCCCHH
Q ss_conf 768983999974726588822
Q gi|254781179|r 251 DPLSRKVFWLEINVQPGMTPV 271 (300)
Q Consensus 251 d~~~g~~~~lEvN~~PGlt~~ 271 (300)
+...++++++++||..+.|-.
T Consensus 222 ~~~~~rv~liD~NP~~~~Tdp 242 (297)
T pfam07065 222 PRPFDKVWLIDFNPFGRHTDP 242 (297)
T ss_pred CCCCCEEEEEEECCCCCCCCC
T ss_conf 499994999996788888824
No 91
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=93.02 E-value=0.02 Score=35.60 Aligned_cols=105 Identities=15% Similarity=0.113 Sum_probs=65.2
Q ss_pred HHHHCCCCHHCCCCCCCCEEECCCEEEECCCC---CHHHHHCCCCEEEEECCCCCCCCEEEEC----CHHHHHHHHHHHC
Q ss_conf 33203650010000212100001213202220---0012210586256432477642114325----9899999886300
Q gi|254781179|r 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIKPLKGGSSLGIIVIK----KDQSIPLDLLQSS 158 (300)
Q Consensus 86 ~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~---~~~~~~~~~P~ivKP~~ggsS~Gv~~v~----~~~el~~~~~~~~ 158 (300)
....+.+|..+++.+.+.+++.|.-.-....+ +...+.+++|++.||..+.+..+..+.. +...+..+. ..
T Consensus 45 ~~~~~~~~~~~~~~~~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~--~~ 122 (317)
T COG1181 45 AGLWMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAP--YV 122 (317)
T ss_pred CCEEEECCCHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCEEECCHHHHHHCCCHHHHHHHHHHCCCCCCH--HH
T ss_conf 6327850310122202698778715588888706999999709987607644533235099998899867865123--56
Q ss_pred CCCCC--CCCCCCCCCCCCEEEEEECCCCCCCEEEE
Q ss_conf 36688--54223335788457887314444200220
Q gi|254781179|r 159 SWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEI 192 (300)
Q Consensus 159 ~~~~~--~~vlVEefI~G~E~~v~Vl~~~~~~~~ei 192 (300)
.+..+ ..+++|++.+|.+|.+-|..++....+.+
T Consensus 123 ~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~ 158 (317)
T COG1181 123 ALTRDEYSSVIVEEVEEGLGFPLFVKPAREGSSVGR 158 (317)
T ss_pred HHHCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEE
T ss_conf 753345204788877414688789985873113679
No 92
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=91.44 E-value=0.71 Score=25.69 Aligned_cols=61 Identities=21% Similarity=0.255 Sum_probs=41.0
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9836787127889999999999999879889996158656888875399899992548843431023566643210
Q gi|254781179|r 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 (300)
Q Consensus 3 vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~lhG~~gEdg~iq~~le~~~ip 78 (300)
|++|+. .-|..+++.|.+.||+|.++|.++.....+.. +.|+- .+|| ||+=+..|+..|+.
T Consensus 4 iI~GaG--------~vG~~La~~Ls~e~~dV~vID~d~~~~~~~~~-~lDv~--~i~G----d~~~~~~L~~Agi~ 64 (455)
T PRK09496 4 IILGAG--------QVGGTLAERLVGENNDVTVIDTDEERLRRLQD-RLDVR--TVVG----NGSHPDVLREAGAE 64 (455)
T ss_pred EEECCC--------HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-HCCEE--EEEE----CCCCHHHHHHCCCC
T ss_conf 999988--------89999999998689979999899999999886-25868--9996----68999999965998
No 93
>TIGR02023 BchP-ChlP geranylgeranyl reductase; InterPro: IPR010253 This entry represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll . It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).; GO: 0045550 geranylgeranyl reductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=91.04 E-value=0.41 Score=27.23 Aligned_cols=51 Identities=35% Similarity=0.619 Sum_probs=38.8
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCCCCCCCCCHHH-HHHHHHHHH
Q ss_conf 289836787127889999999999999879889996158656888875399899992548843431023-566643210
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ-AILELLEIP 78 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~lhG~~gEdg~iq-~~le~~~ip 78 (300)
|+|+-||+| |.+.+..|.+.|++|++++ ..|.+-|| +. |.|| ++.|.++||
T Consensus 3 V~viGGGPs---------GA~AAe~LA~~G~~tiLlE------R~l~~~KP------CG------GAIPp~li~EFdiP 54 (408)
T TIGR02023 3 VAVIGGGPS---------GAAAAETLARAGIETILLE------RALSRIKP------CG------GAIPPCLIEEFDIP 54 (408)
T ss_pred EEEEECCCC---------HHHHHHHHHHCCCEEEEEE------HHHCCCCC------CC------CCCCHHHCCCCCCC
T ss_conf 789816850---------6899999986497488630------24326588------88------86651101235788
No 94
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=90.84 E-value=1.4 Score=23.90 Aligned_cols=55 Identities=27% Similarity=0.300 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999999879889996158656888875399899992548843431023566643210
Q gi|254781179|r 18 SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 (300)
Q Consensus 18 S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~lhG~~gEdg~iq~~le~~~ip 78 (300)
=|.++++.|.+.||+|..+|.++.........+.|. .+++| |++=+..|+..|+.
T Consensus 11 vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~--~~v~g----d~t~~~~L~~agi~ 65 (225)
T COG0569 11 VGRSVARELSEEGHNVVLIDRDEERVEEFLADELDT--HVVIG----DATDEDVLEEAGID 65 (225)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCE--EEEEE----CCCCHHHHHHCCCC
T ss_conf 889999999878990899976889999863200044--99992----68898999867986
No 95
>PRK05693 short chain dehydrogenase; Provisional
Probab=90.62 E-value=1.4 Score=23.77 Aligned_cols=33 Identities=27% Similarity=0.441 Sum_probs=25.8
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
|++|.|+.| .| |+++++.|.+.|++|+...-+.
T Consensus 3 vvlITGass---GI----G~alA~~la~~G~~V~~~~R~~ 35 (274)
T PRK05693 3 VVLITGCSS---GI----GRALADAFKAAGYEVWATARKA 35 (274)
T ss_pred EEEECCCCC---HH----HHHHHHHHHHCCCEEEEEECCH
T ss_conf 899948885---89----9999999998799999997999
No 96
>pfam02514 CobN-Mg_chel CobN/Magnesium Chelatase. This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN is implicated in the conversion of hydrogenobyrinic acid a,c-diamide to cobyrinic acid. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis.
Probab=90.39 E-value=1.2 Score=24.20 Aligned_cols=81 Identities=19% Similarity=0.099 Sum_probs=50.1
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC----CHHHHHH---HCCCCEEEECCCCCCC--CCCHHHHH
Q ss_conf 2898367871278899999999999998798899961586----5688887---5399899992548843--43102356
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----SVGLVLA---HLKPDLAFNVLHGNFG--EDGLVQAI 71 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~----~~~~~l~---~~~~D~vf~~lhG~~g--Edg~iq~~ 71 (300)
|+|||...--- .-.+.-..++..+|++.|..|+.+.... .+...+. +.++|+++|+.+...+ ..+.-..+
T Consensus 71 Vgilfyr~~~~-~g~~~~idali~~Le~~G~nvipvf~~~~~~~~~~~~~~~~~~~~vd~iI~~~~F~l~~~~~~~~~~~ 149 (1064)
T pfam02514 71 VGILFYRSYLL-AGDTAHIDALIRALEARGLNVIPVFSDLDSREAVRDFFFRDGEPKVDAIINLTGFSLVGGPAENGVEL 149 (1064)
T ss_pred EEEEECHHHHH-CCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHH
T ss_conf 99996555664-39848999999999978996999994575509999999847998873899738423668882167789
Q ss_pred HHHHHHHCCCC
Q ss_conf 66432100231
Q gi|254781179|r 72 LELLEIPYTHS 82 (300)
Q Consensus 72 le~~~ipy~Gs 82 (300)
|+.+|||+.-+
T Consensus 150 l~~lnVPvl~~ 160 (1064)
T pfam02514 150 LKKLDVPVLQA 160 (1064)
T ss_pred HHHCCCCEEEE
T ss_conf 98779988997
No 97
>pfam02844 GARS_N Phosphoribosylglycinamide synthetase, N domain. Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam00289).
Probab=88.86 E-value=1.7 Score=23.19 Aligned_cols=75 Identities=23% Similarity=0.161 Sum_probs=45.6
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHCC--CEEEEECC-------------C----CCHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 9836787127889999999999999879--88999615-------------8----656888875399899992548843
Q gi|254781179|r 3 VLMGGISSEREVSLSSGKACASALEDAG--FKVSQIDV-------------D----RSVGLVLAHLKPDLAFNVLHGNFG 63 (300)
Q Consensus 3 vl~GG~s~E~~iSl~S~~~i~~aL~~~g--~~v~~id~-------------~----~~~~~~l~~~~~D~vf~~lhG~~g 63 (300)
++-|+...|| +++++|.+.. .+++.+-. + +.+.......++|+|+. |+-.
T Consensus 3 LvIGsGgREH--------Ai~~~l~~s~~~~~l~~~pgN~gi~~~~~~~~i~~~d~~~i~~~~~~~~idlvii---GPE~ 71 (99)
T pfam02844 3 LVVGSGGREH--------ALAWKLAQSPRVEKVYVAPGNPGTAQLAKNVNIDITDFEALADFAKEENIDLVVV---GPEA 71 (99)
T ss_pred EEECCCHHHH--------HHHHHHHCCCCCCEEEEECCCCHHHHHCEEECCCCCCHHHHHHHHHHCCCCEEEE---CCCH
T ss_conf 9987887999--------9999996499977699958981577747501458447999999999819749998---9606
Q ss_pred --CCCHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf --43102356664321002310023320
Q gi|254781179|r 64 --EDGLVQAILELLEIPYTHSGILASAL 89 (300)
Q Consensus 64 --Edg~iq~~le~~~ipy~Gs~~~~~~l 89 (300)
.+| +...|+..|||..||+..++.+
T Consensus 72 pL~~G-l~D~l~~~gi~vfGP~k~aA~L 98 (99)
T pfam02844 72 PLVAG-IVDALRAAGIPVFGPSKAAARL 98 (99)
T ss_pred HHHHH-HHHHHHHCCCEEECCCHHHHHC
T ss_conf 77878-8999986899179928688736
No 98
>PRK07832 short chain dehydrogenase; Provisional
Probab=88.58 E-value=2 Score=22.79 Aligned_cols=37 Identities=24% Similarity=0.205 Sum_probs=28.9
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf 89836787127889999999999999879889996158656888
Q gi|254781179|r 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV 45 (300)
Q Consensus 2 ~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~ 45 (300)
+++.||.|. =|++++..|.+.|++|.+++.+++-...
T Consensus 3 alITGassG-------IG~a~A~~la~~Ga~v~l~~r~~~~l~~ 39 (272)
T PRK07832 3 CFVTGAASG-------IGRATALRLAAQGAELFLTDRDADGLAQ 39 (272)
T ss_pred EEEECCCHH-------HHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 999472019-------9999999999889989999898899999
No 99
>pfam00731 AIRC AIR carboxylase. Members of this family catalyse the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyse the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.
Probab=88.26 E-value=1.9 Score=22.96 Aligned_cols=97 Identities=20% Similarity=0.318 Sum_probs=55.8
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCC--CEEEEECCCCCHHHHH---H---HCCCCEEEECCCCCCCCCCHHHHHH
Q ss_conf 289836787127889999999999999879--8899961586568888---7---5399899992548843431023566
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAG--FKVSQIDVDRSVGLVL---A---HLKPDLAFNVLHGNFGEDGLVQAIL 72 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g--~~v~~id~~~~~~~~l---~---~~~~D~vf~~lhG~~gEdg~iq~~l 72 (300)
|+|++|+.|-. ..++.+.+.|++.| |++..+..++.....+ + ....+ ||.+.-|. .+.+++..
T Consensus 3 V~IimGS~SD~-----~~~~~a~~~L~~~gi~~e~~V~SAHRtp~~l~~~~~~~~~~g~~-ViIa~AG~---aa~LpGvv 73 (150)
T pfam00731 3 VGIIMGSDSDL-----PTMEKAAKVLKEFGIPYEVRVVSAHRTPERLFEYAKEAEARGIK-VIIAGAGG---AAHLPGMV 73 (150)
T ss_pred EEEEECCHHHH-----HHHHHHHHHHHHCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCE-EEEEECCC---CCCCCHHH
T ss_conf 99995767309-----99999999999859976986765103878999999999975973-99995684---20120001
Q ss_pred HHH-HHHCCCCCHHHHHH-CCCCHHCCCCCCCCEEEC
Q ss_conf 643-21002310023320-365001000021210000
Q gi|254781179|r 73 ELL-EIPYTHSGILASAL-SMDKMRSKQVVSSCGVPV 107 (300)
Q Consensus 73 e~~-~ipy~Gs~~~~~~l-~~dK~~~k~~l~~~gIpt 107 (300)
..+ ..|.+|.++.+..+ .+|-.++ .+-.-.|+|+
T Consensus 74 A~~T~~PVIgVP~~~~~l~G~dsllS-~vqMP~Gvpv 109 (150)
T pfam00731 74 AALTTLPVIGVPVKSKALGGLDSLLS-IVQMPSGIPV 109 (150)
T ss_pred HHHCCCCEEECCCCCCCCCCHHHHHH-HHCCCCCCCE
T ss_conf 76479966857778777754545999-9619999976
No 100
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=88.18 E-value=1.6 Score=23.49 Aligned_cols=62 Identities=27% Similarity=0.358 Sum_probs=36.4
Q ss_pred HHHHHCCCEEEEEC-----CCCCHHHHHHH-CCCCEEEECCCCCCC----CCCH-HHHHHHHHHHHCCCCCHH
Q ss_conf 99998798899961-----58656888875-399899992548843----4310-235666432100231002
Q gi|254781179|r 24 SALEDAGFKVSQID-----VDRSVGLVLAH-LKPDLAFNVLHGNFG----EDGL-VQAILELLEIPYTHSGIL 85 (300)
Q Consensus 24 ~aL~~~g~~v~~id-----~~~~~~~~l~~-~~~D~vf~~lhG~~g----Edg~-iq~~le~~~ipy~Gs~~~ 85 (300)
+.|++.|.++..+. ...+....+.. .++|+|+|...|... +||. |-...=.++|||+-+=..
T Consensus 36 ~~L~~~Gi~~~~V~Ki~e~g~p~v~d~i~~~g~I~lVINt~~~~~~~~~~~Dg~~IRr~Av~~~IP~~Ttl~~ 108 (112)
T cd00532 36 RVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTPNAT 108 (112)
T ss_pred HHHHHCCCEEEEEEECCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEECCHHH
T ss_conf 9999879834898504878998899998668967999988888877332454899999999769998844898
No 101
>PRK09072 short chain dehydrogenase; Provisional
Probab=87.64 E-value=2.3 Score=22.42 Aligned_cols=38 Identities=24% Similarity=0.212 Sum_probs=28.9
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf 289836787127889999999999999879889996158656888
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV 45 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~ 45 (300)
++++.|+.| -=|+++++.|.+.|++|++++-+.+-...
T Consensus 7 ~vlITGass-------GIG~a~A~~la~~G~~vil~~R~~~~L~~ 44 (262)
T PRK09072 7 RVLLTGASG-------GIGEALAEALCAAGARLLLVGRNAEKLEA 44 (262)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 899948623-------99999999999879989999898999999
No 102
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=87.45 E-value=2.4 Score=22.35 Aligned_cols=105 Identities=19% Similarity=0.228 Sum_probs=64.6
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCC--CEEEEECCCCCHHHHHH----HCCCCE-EEECCCCCCCCCCHHHHHHH
Q ss_conf 289836787127889999999999999879--88999615865688887----539989-99925488434310235666
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAG--FKVSQIDVDRSVGLVLA----HLKPDL-AFNVLHGNFGEDGLVQAILE 73 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g--~~v~~id~~~~~~~~l~----~~~~D~-vf~~lhG~~gEdg~iq~~le 73 (300)
|+||+|-.| -+.+.+..++.|++.| |++..+..++....... ..+-++ ||++. ..| -..++|+..
T Consensus 5 V~IIMGS~S-----D~~~mk~Aa~~L~~fgv~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAg--AGg-AAHLPGmvA 76 (162)
T COG0041 5 VGIIMGSKS-----DWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAG--AGG-AAHLPGMVA 76 (162)
T ss_pred EEEEECCCC-----HHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEC--CCC-HHHCCHHHH
T ss_conf 899955702-----399999999999984997599998446798999999999987897599965--751-110620265
Q ss_pred HH-HHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEE
Q ss_conf 43-21002310023320365001000021210000121320
Q gi|254781179|r 74 LL-EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113 (300)
Q Consensus 74 ~~-~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~ 113 (300)
.+ -+|.+|.++.+.++.-=..+..-+=.-.|||++...+-
T Consensus 77 a~T~lPViGVPv~s~~L~GlDSL~SiVQMP~GiPVaTvaIg 117 (162)
T COG0041 77 AKTPLPVIGVPVQSKALSGLDSLLSIVQMPAGVPVATVAIG 117 (162)
T ss_pred HCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEC
T ss_conf 55879867414762334664877887218999736887606
No 103
>TIGR01326 OAH_OAS_sulfhy O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; InterPro: IPR006235 This family of sequences is a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine sulfhydrylase (OAH, 2.5.1.49 from EC) and O-acetylserine sulfhydrylase (OAS, 2.5.1.47 from EC). An alternate name for OAH sulfhydrylase is homocysteine synthase.; GO: 0016765 transferase activity transferring alkyl or aryl (other than methyl) groups, 0006520 amino acid metabolic process.
Probab=87.14 E-value=1.1 Score=24.38 Aligned_cols=66 Identities=20% Similarity=0.214 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHHHH--CCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCHH
Q ss_conf 9999999999879889996158656888875--39989999254884343102356664321002310023320365001
Q gi|254781179|r 18 SGKACASALEDAGFKVSQIDVDRSVGLVLAH--LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95 (300)
Q Consensus 18 S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~--~~~D~vf~~lhG~~gEdg~iq~~le~~~ipy~Gs~~~~~~l~~dK~~ 95 (300)
|-+...-.|+++|++|..+|.|+++...-+. .+--.|| +|.+|=|-. .+ -|=..
T Consensus 109 TynLF~~TlkrlGIevrFvd~dd~pe~~~k~id~nTKAvf----------------~EtIgNP~~-------~v-~Die~ 164 (434)
T TIGR01326 109 TYNLFKHTLKRLGIEVRFVDGDDDPEELEKAIDENTKAVF----------------AETIGNPAL-------NV-PDIEA 164 (434)
T ss_pred HHHHHHHHHHHCCEEEEEECCCCCHHHHHHHCCCCCEEEE----------------EECCCCCCC-------CC-CCHHH
T ss_conf 5789999555448148872788887899976066751898----------------401238776-------76-78589
Q ss_pred CCCCCCCC--EEEC
Q ss_conf 00002121--0000
Q gi|254781179|r 96 SKQVVSSC--GVPV 107 (300)
Q Consensus 96 ~k~~l~~~--gIpt 107 (300)
.-++++++ |||.
T Consensus 165 ~a~~Ah~~PhgvPl 178 (434)
T TIGR01326 165 VAEVAHAHPHGVPL 178 (434)
T ss_pred HHHHHHHCCCCCEE
T ss_conf 99999867898348
No 104
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B; InterPro: IPR013484 MoaB is thought to be involved in molybdopterin biosynthesis, though its exact role is not known. Structural studies of this polypeptide suggest that it may play a role in substrate-shuttling during biosynthesis . MoaB was capable of binding GTP, and it was suggested that the putative active site could also bind precursor Z and/or molybdenum. Potential protein interaction domains were also found, implying that MoaB may play a transport and/or storage role in molybdopterin biosynthesis. .
Probab=87.03 E-value=0.84 Score=25.23 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHH--------HHCCCCEEEECCC-CCCCCCCHHHHH
Q ss_conf 999999999998798899961586568888--------7539989999254-884343102356
Q gi|254781179|r 17 SSGKACASALEDAGFKVSQIDVDRSVGLVL--------AHLKPDLAFNVLH-GNFGEDGLVQAI 71 (300)
Q Consensus 17 ~S~~~i~~aL~~~g~~v~~id~~~~~~~~l--------~~~~~D~vf~~lh-G~~gEdg~iq~~ 71 (300)
.||+.++..|++.||+..-=.+-++....| .....|+|+..=. |..|+|.+-|++
T Consensus 22 tSG~~Lv~~L~~AGH~la~R~iv~DD~y~iRA~Vs~WIAd~~VqVil~TGGTGfTgRD~TPEAl 85 (163)
T TIGR02667 22 TSGQVLVERLTEAGHRLAERAIVKDDIYQIRAQVSEWIADPAVQVILITGGTGFTGRDVTPEAL 85 (163)
T ss_pred CCHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHH
T ss_conf 6247899999871503211432674489999999873489865568871882346778825531
No 105
>pfam02142 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site.
Probab=86.84 E-value=1.8 Score=23.14 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=20.2
Q ss_pred HHHHHHHCCCCEEEECCCCCCC--CCCH-HHHHHHHHHHHCC
Q ss_conf 6888875399899992548843--4310-2356664321002
Q gi|254781179|r 42 VGLVLAHLKPDLAFNVLHGNFG--EDGL-VQAILELLEIPYT 80 (300)
Q Consensus 42 ~~~~l~~~~~D~vf~~lhG~~g--Edg~-iq~~le~~~ipy~ 80 (300)
....+...+.|+|+|...+..+ .||. +....+.++||+.
T Consensus 50 i~d~i~~~~IdlVInt~~~~~~~~~dg~~iRr~a~~~~Ip~~ 91 (92)
T pfam02142 50 IGDLIKNGEIDLVINTLYPFKATVHDGYAIRRAAENIDIPLP 91 (92)
T ss_pred HHHHHHCCCCCEEEECCCCCCEECCCCHHHHHHHHHCCCCCC
T ss_conf 999998299519998389885112588789999992699854
No 106
>PRK13435 response regulator; Provisional
Probab=86.22 E-value=2.3 Score=22.47 Aligned_cols=49 Identities=22% Similarity=0.259 Sum_probs=33.8
Q ss_pred HHHHHHHHHHCCCEEEEE-CCCCCHHHHHHHCCCCEEEECCCCCCCCCCH
Q ss_conf 999999999879889996-1586568888753998999925488434310
Q gi|254781179|r 19 GKACASALEDAGFKVSQI-DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL 67 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~i-d~~~~~~~~l~~~~~D~vf~~lhG~~gEdg~ 67 (300)
+..+...|++.||+|... ...+.-...+...+||+|+-=++=+.|.||.
T Consensus 14 ~~~l~~~L~~~G~~vv~~A~~~~eAl~~~~~~~PDlvllDi~LpdG~~G~ 63 (141)
T PRK13435 14 ALELEKLLEEAGHQVVGIASTSEQALALGRRAQPDVALVDIRLADGPTGV 63 (141)
T ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHH
T ss_conf 99999999987997999759999999997659998999788789999899
No 107
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=86.11 E-value=1.7 Score=23.21 Aligned_cols=64 Identities=19% Similarity=0.297 Sum_probs=37.9
Q ss_pred HHHHHHHHHHCCCEEEEE-----------------C----CCCCHHHHHHHCCCCEEEECCCCCCC-CCCH-HHHHHHHH
Q ss_conf 999999999879889996-----------------1----58656888875399899992548843-4310-23566643
Q gi|254781179|r 19 GKACASALEDAGFKVSQI-----------------D----VDRSVGLVLAHLKPDLAFNVLHGNFG-EDGL-VQAILELL 75 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~i-----------------d----~~~~~~~~l~~~~~D~vf~~lhG~~g-Edg~-iq~~le~~ 75 (300)
.-.+++.|.++||+++.- . ...+....+...++|+|+|.-.|..+ +||. +-...=.+
T Consensus 15 ~l~~ak~l~~lGf~i~AT~GTa~~L~~~Gi~~~~v~k~~e~~p~i~d~i~~~~i~lVINt~~~~~~~~dg~~IRr~Av~~ 94 (110)
T cd01424 15 AVEIAKRLAELGFKLVATEGTAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPSGKRAIRDGFSIRRAALEY 94 (110)
T ss_pred HHHHHHHHHHCCCEEEECCHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHC
T ss_conf 99999999988999998716999998649864033005679976899997793589997788986574299999999976
Q ss_pred HHHCCCC
Q ss_conf 2100231
Q gi|254781179|r 76 EIPYTHS 82 (300)
Q Consensus 76 ~ipy~Gs 82 (300)
+|||.-+
T Consensus 95 ~Ip~~Ts 101 (110)
T cd01424 95 KVPYFTT 101 (110)
T ss_pred CCCEEEC
T ss_conf 9999966
No 108
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=85.96 E-value=1.6 Score=23.39 Aligned_cols=30 Identities=33% Similarity=0.543 Sum_probs=25.6
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 289836787127889999999999999879889996158
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD 39 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~ 39 (300)
||||-+|++ |.+.+..|.+.||+|.+++..
T Consensus 330 VAIIGsGPA---------GLsaA~~Lar~G~~VTVFE~~ 359 (654)
T PRK12769 330 VAIIGAGPA---------GLACADVLTRNGVAVTVYDRH 359 (654)
T ss_pred EEEECCCHH---------HHHHHHHHHHCCCEEEEECCC
T ss_conf 999897789---------999999999769757995257
No 109
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=85.94 E-value=2.8 Score=21.83 Aligned_cols=67 Identities=24% Similarity=0.285 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH----HHHHHHCCCCEEEECCCCCCCCCCHHHHH------HHHHHHH
Q ss_conf 7127889999999999999879889996158656----88887539989999254884343102356------6643210
Q gi|254781179|r 9 SSEREVSLSSGKACASALEDAGFKVSQIDVDRSV----GLVLAHLKPDLAFNVLHGNFGEDGLVQAI------LELLEIP 78 (300)
Q Consensus 9 s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~----~~~l~~~~~D~vf~~lhG~~gEdg~iq~~------le~~~ip 78 (300)
+.||. +..+.++.|++.|++|.++.++++. ...-+..++|-++-.+.-...|-|+||-+ |...|++
T Consensus 98 ~iEH~----aVl~~~~~Le~~g~~Vtyl~v~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~ 173 (386)
T COG1104 98 AIEHP----AVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGIL 173 (386)
T ss_pred CCCCH----HHHHHHHHHHHCCCEEEEECCCCCCEECHHHHHHHCCCCCEEEEEEECCCCEEECCCHHHHHHHHHHCCCE
T ss_conf 54349----99999999986697579968888972879999986388845999985026820112099999999975981
Q ss_pred C
Q ss_conf 0
Q gi|254781179|r 79 Y 79 (300)
Q Consensus 79 y 79 (300)
|
T Consensus 174 f 174 (386)
T COG1104 174 F 174 (386)
T ss_pred E
T ss_conf 7
No 110
>PRK05993 short chain dehydrogenase; Provisional
Probab=85.74 E-value=2.9 Score=21.77 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=29.2
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH
Q ss_conf 289836787127889999999999999879889996158656888875
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH 48 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~ 48 (300)
+++|.|+.|. =|+++++.|.+.|++|+...-+.+....+..
T Consensus 6 ~vlITGassG-------IG~alA~~la~~G~~V~~~~R~~~~l~~l~~ 46 (277)
T PRK05993 6 SILITGCSSG-------IGAYCAHALQKRGWRVFATCRKPEDIAALEA 46 (277)
T ss_pred EEEEECCCCH-------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
T ss_conf 8999256869-------9999999999879999999799999999984
No 111
>COG1489 SfsA DNA-binding protein, stimulates sugar fermentation [General function prediction only]
Probab=85.69 E-value=1.2 Score=24.30 Aligned_cols=133 Identities=22% Similarity=0.291 Sum_probs=65.9
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCC-CCC----CCCCC-------CCCCCCCCCCCCHHHHHHHHH
Q ss_conf 688542233357884578873144442002202554333-311----00001-------122224586521166655444
Q gi|254781179|r 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF-YSY----ELKYS-------SLNSTHVLPAKIPLDIYKEVQ 228 (300)
Q Consensus 161 ~~~~~vlVEefI~G~E~~v~Vl~~~~~~~~ei~~~~~~~-~dy----~~Ky~-------~~~~~~~~Pa~l~~~~~~~i~ 228 (300)
++.++++++-.++|+++++.+-+.+.+ .++..|++.+ +.. ..||. ...+-..+...++..+..+..
T Consensus 14 ~R~nRFl~dv~l~G~~~~~H~~ntGrm--~~l~~pG~~v~l~~sd~~~rK~~~~~~~~~~~~~~v~VnT~l~N~l~~eai 91 (235)
T COG1489 14 KRYNRFLADVELDGEEVTAHCPNTGRM--TELLTPGNTVWLSRSDNPKRKYRYTLELVEADNTLVCVNTGLPNRLAEEAI 91 (235)
T ss_pred EEECCEEEEEEECCEEEEEECCCCCCC--CCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCEEEEEECCCCHHHHHHHH
T ss_conf 663016999997895999983898765--213679977999982399863218989987177399980776079999998
Q ss_pred H-HHH---HHHHHCC--C-CCEEEEEEEEECCCCEEEEEEECCCCCCC-HHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 4-444---5775348--7-64579999997689839999747265888-22389999998399989999999997
Q gi|254781179|r 229 R-LAF---LAHQAIG--C-RGISRSDFLFDPLSRKVFWLEINVQPGMT-PVSIFPEMAAYAGYSFRELLLWMVED 295 (300)
Q Consensus 229 ~-~a~---~~~~alg--~-~g~~rvDf~~d~~~g~~~~lEvN~~PGlt-~~s~~p~~~~~~G~s~~~li~~ii~~ 295 (300)
. ... .-|..+. . .|=+|+||+++...+..+++||-..--+. ...+||-+-.+-|-.+-+.|..++..
T Consensus 92 ~~~~~~~L~gy~~~k~EvkyGnSRiDfll~~~~~~~~~vEVK~vtL~~~~~a~FPDApT~RG~KHLreL~~~~~~ 166 (235)
T COG1489 92 PNGQIPELAGYSTIKREVKYGNSRIDFLLDDDERPDCYVEVKSVTLVENGVAMFPDAPTARGQKHLRELERLAKE 166 (235)
T ss_pred HHCCCCCCCCCHHEEEECCCCCEEEEEEECCCCCCCEEEEEEEEEEEECCEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 637544346621050001106615899975898873599983478751888978998523367799999999970
No 112
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=84.60 E-value=2.1 Score=22.72 Aligned_cols=72 Identities=22% Similarity=0.335 Sum_probs=42.4
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC---------------------HHHHHHHCCCCEEEECCC
Q ss_conf 28983678712788999999999999987988999615865---------------------688887539989999254
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNVLH 59 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~---------------------~~~~l~~~~~D~vf~~lh 59 (300)
|||+-+|++ |.+.+..|.+.||+|.+++.... -...+......+.+|.-
T Consensus 313 VAVIGsGPA---------GLaaA~~Lar~G~~VTVfE~~~~~GGlL~yGIP~fRLPK~vv~rei~~l~~lGV~f~~n~~- 382 (639)
T PRK12809 313 VAVIGAGPA---------GLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCE- 382 (639)
T ss_pred EEEECCCHH---------HHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCE-
T ss_conf 999897589---------9999999997599069993688889868535874527778999999999864988991967-
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCH
Q ss_conf 8843431023566643210023100
Q gi|254781179|r 60 GNFGEDGLVQAILELLEIPYTHSGI 84 (300)
Q Consensus 60 G~~gEdg~iq~~le~~~ipy~Gs~~ 84 (300)
-|.|-++..|++.+.--|+|.+.
T Consensus 383 --VGkDit~~eL~~~yDAVflg~Ga 405 (639)
T PRK12809 383 --IGRDITFSDLTSEYDAVFIGVGT 405 (639)
T ss_pred --ECCCCCHHHHHHHCCEEEEEECC
T ss_conf --79868899997317989997367
No 113
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=84.37 E-value=2.8 Score=21.91 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=25.7
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 289836787127889999999999999879889996158
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD 39 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~ 39 (300)
|||+-+|++ |.+++..|...||+|.+++..
T Consensus 196 VAIIGaGPA---------GLsaAy~L~~~Gh~VTVfE~~ 225 (652)
T PRK12814 196 VAIIGAGPA---------GLTAAYYLLRKGHDVTIFDAN 225 (652)
T ss_pred EEEECCCHH---------HHHHHHHHHHCCCEEEEEECC
T ss_conf 999683789---------999999999779906998158
No 114
>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=84.37 E-value=3.3 Score=21.38 Aligned_cols=49 Identities=20% Similarity=0.409 Sum_probs=36.9
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC-------CHHHHHHHCCCCEEEECC
Q ss_conf 98367871278899999999999998798899961586-------568888753998999925
Q gi|254781179|r 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------SVGLVLAHLKPDLAFNVL 58 (300)
Q Consensus 3 vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~-------~~~~~l~~~~~D~vf~~l 58 (300)
++.||.. -=|..++..|.+.||+|..++-.+ .+...+...+||+|+++.
T Consensus 2 LVtG~~G-------fiGs~l~~~L~~~g~~v~~~~r~~~D~~d~~~l~~~~~~~~pd~VihlA 57 (284)
T pfam04321 2 LVTGANG-------QLGRELTRLLAERGVEVVALDRPELDLTDPEAVAALVREARPDVVVNAA 57 (284)
T ss_pred EEECCCC-------HHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECC
T ss_conf 9964899-------8999999999868998999548625788999999999864997999724
No 115
>PRK06182 short chain dehydrogenase; Validated
Probab=84.35 E-value=3.4 Score=21.37 Aligned_cols=34 Identities=32% Similarity=0.351 Sum_probs=26.4
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28983678712788999999999999987988999615865
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS 41 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~ 41 (300)
++++.|+.| . =|++++..|.+.|++|+..+-+.+
T Consensus 5 v~lITGass---G----IG~a~a~~la~~G~~V~~~~r~~~ 38 (273)
T PRK06182 5 VALVTGASS---G----IGKATARKLIAEGFTVYGAARRVD 38 (273)
T ss_pred EEEEECCCH---H----HHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 899906320---9----999999999987998999979899
No 116
>pfam03738 GSP_synth Glutathionylspermidine synthase. This region contains the Glutathionylspermidine synthase enzymatic activity EC:6.3.1.8. This is the C-terminal region in bienzymes. Glutathionylspermidine (GSP) synthetases of Trypanosomatidae and Escherichia coli couple hydrolysis of ATP (to ADP and Pi) with formation of an amide bond between spermidine and the glycine carboxylate of glutathione (gamma-Glu-Cys-Gly). In the pathogenic trypanosomatids, this reaction is the penultimate step in the biosynthesis of the antioxidant metabolite, trypanothione (N1,N8-bis-(glutathionyl)spermidine), and is a target for drug design.
Probab=84.24 E-value=3.4 Score=21.34 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=37.3
Q ss_pred HHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHCCCCC-C
Q ss_conf 233203650010000212100001213202220001221058625643247764211432598999998863003668-8
Q gi|254781179|r 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-G 163 (300)
Q Consensus 85 ~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~~~~~~~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~~~~~-~ 163 (300)
.-..+-.||.+.-.+..-. |-=++.+-+..+ .....+.++|.||..|.-+-+|.++.+...+.. . .-.+ +
T Consensus 247 ~wk~llsnKalLalLW~l~--p~hp~LLptyfe--~~~~~~~~yV~KP~~gREG~nV~i~~~g~~~~~----~-~g~Y~~ 317 (372)
T pfam03738 247 AWKAILSNKAILPLLWELF--PGHPNLLPAYFE--DDPLAGTGYVKKPIFGREGANVTIIEDGKVLAE----T-DGPYGE 317 (372)
T ss_pred HHHHHHCCHHHHHHHHHHC--CCCCCCCHHHCC--CCCCCCCCCEEEECCCCCCCCEEEEECCCEEEC----C-CCCCCC
T ss_conf 5898850647999999855--899120423258--864457772753235666897799728945423----6-898788
Q ss_pred CCCCCCCCCCC
Q ss_conf 54223335788
Q gi|254781179|r 164 DQLLIEQYVDG 174 (300)
Q Consensus 164 ~~vlVEefI~G 174 (300)
...+.|+|++=
T Consensus 318 ~~~IyQ~~~~L 328 (372)
T pfam03738 318 EGYIYQQYAEL 328 (372)
T ss_pred CCEEEEECCCC
T ss_conf 87499972768
No 117
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=84.14 E-value=2.1 Score=22.65 Aligned_cols=30 Identities=30% Similarity=0.453 Sum_probs=25.9
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 289836787127889999999999999879889996158
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD 39 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~ 39 (300)
|||+-||++ |.+.+..|.++||+|.+++..
T Consensus 140 VAVIGaGPA---------GLsaA~~La~~G~~VtVfE~~ 169 (560)
T PRK12771 140 VAVIGGGPA---------GLSAAYQLRRLGHAVTIFEAG 169 (560)
T ss_pred EEEECCCHH---------HHHHHHHHHHCCCEEEEECCC
T ss_conf 999897789---------999999999769858996767
No 118
>PRK06194 hypothetical protein; Provisional
Probab=83.24 E-value=3.7 Score=21.08 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=29.6
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf 28983678712788999999999999987988999615865688
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL 44 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~ 44 (300)
++|+.||.|. =|++++..|-+.|++|+++|.+++-..
T Consensus 8 vavITGassG-------IG~a~A~~la~~Ga~Vvl~d~~~~~l~ 44 (301)
T PRK06194 8 VAVITGAASG-------FGREFARIGARLGMKLVLADVQQDALD 44 (301)
T ss_pred EEEEECCCCH-------HHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 8999273779-------999999999987998999979889999
No 119
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=82.94 E-value=3.8 Score=21.00 Aligned_cols=59 Identities=27% Similarity=0.292 Sum_probs=39.7
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9836787127889999999999999879889996158656888875399899992548843431023566643210
Q gi|254781179|r 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 (300)
Q Consensus 3 vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~lhG~~gEdg~iq~~le~~~ip 78 (300)
|+||.. .-|+.+++.|.+.| ++..+|.+......+..... ++++| |++=+..|+..|+.
T Consensus 2 iI~G~g--------~~G~~la~~L~~~~-~v~vId~d~~~~~~~~~~~~----~vi~G----D~~~~~~L~~a~i~ 60 (115)
T pfam02254 2 IIIGYG--------RVGRSLAEELREGG-PVVVIDKDPERVEELREEGV----PVVVG----DATDEEVLEEAGIE 60 (115)
T ss_pred EEECCC--------HHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHCCC----EEEEE----ECCCHHHHHHHCCC
T ss_conf 998788--------89999999998089-99999998799877886698----69999----56886678761920
No 120
>PRK13984 putative oxidoreductase; Provisional
Probab=82.37 E-value=3.6 Score=21.20 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=25.6
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 289836787127889999999999999879889996158
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD 39 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~ 39 (300)
|||+-+|++ |.+.+..|.+.||+|.+.+..
T Consensus 286 VAVIGsGPA---------GLaaA~~Lar~Gh~VtVFE~~ 315 (604)
T PRK13984 286 VAIVGSGPA---------GLSAAYFLATMGYEVEVYESL 315 (604)
T ss_pred EEEECCCHH---------HHHHHHHHHHCCCEEEEECCC
T ss_conf 999898689---------999999999869868997456
No 121
>PRK06181 short chain dehydrogenase; Provisional
Probab=82.19 E-value=4.1 Score=20.82 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=29.2
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf 289836787127889999999999999879889996158656888
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV 45 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~ 45 (300)
++|+.||.|. =|++++..|.+.|++|.+.+.+++....
T Consensus 3 v~lITGassG-------IG~a~A~~la~~Ga~vvl~~r~~~~l~~ 40 (263)
T PRK06181 3 VVIITGASEG-------IGRALAVRLARAGARLVLAARNEERLAS 40 (263)
T ss_pred EEEEECCCCH-------HHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 9999581019-------9999999999879989999889999999
No 122
>TIGR01942 pcnB poly(A) polymerase; InterPro: IPR010206 This entry describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell , . This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well . Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase.; GO: 0003723 RNA binding, 0004652 polynucleotide adenylyltransferase activity, 0006378 mRNA polyadenylation.
Probab=81.96 E-value=0.81 Score=25.34 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=39.3
Q ss_pred CHHHHHHHHH----HHHHHHHHHHCCCEEEEECC-CCCHHHHHHHCCCCEEEECC
Q ss_conf 7127889999----99999999987988999615-86568888753998999925
Q gi|254781179|r 9 SSEREVSLSS----GKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVL 58 (300)
Q Consensus 9 s~E~~iSl~S----~~~i~~aL~~~g~~v~~id~-~~~~~~~l~~~~~D~vf~~l 58 (300)
.++|.|+..| |-.|...|++.||+.++|.. -++|..-+....+|+|=++.
T Consensus 4 ~s~H~I~r~~~S~~A~~Vv~rL~~AGyqAY~VGG~vRDLlLG~ePKDFDv~T~A~ 58 (448)
T TIGR01942 4 ESEHNIDRQSFSAHALNVVRRLKKAGYQAYIVGGAVRDLLLGIEPKDFDVATSAT 58 (448)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHCCCCCCCCCCCCCCC
T ss_conf 7556765777649999999987007823767231587765479886442127896
No 123
>PRK06180 short chain dehydrogenase; Provisional
Probab=81.84 E-value=4.2 Score=20.74 Aligned_cols=41 Identities=22% Similarity=0.120 Sum_probs=28.9
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH
Q ss_conf 289836787127889999999999999879889996158656888875
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH 48 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~ 48 (300)
++++.|+.| . =|++++..|.+.|++|+..+-+.+-...+..
T Consensus 6 vvlITGass---G----IG~aiA~~l~~~G~~Vi~~~R~~~~l~~l~~ 46 (277)
T PRK06180 6 TWLITGVSS---G----FGRALAQAALAAGHRVVGTVRSAAARRDFEA 46 (277)
T ss_pred EEEECCCCC---H----HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
T ss_conf 899917873---9----9999999999879999999899999999998
No 124
>PRK05650 short chain dehydrogenase; Provisional
Probab=81.65 E-value=4.3 Score=20.70 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=28.9
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf 89836787127889999999999999879889996158656888
Q gi|254781179|r 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV 45 (300)
Q Consensus 2 ~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~ 45 (300)
++|.||.|. =|++++..|.+.|++|.++|.+++-...
T Consensus 3 VlITGassG-------IG~alA~~la~~G~~V~l~~r~~~~l~~ 39 (270)
T PRK05650 3 VMITGAASG-------LGRAIALRWAREGWRLALADVNEEGGEE 39 (270)
T ss_pred EEEECCCCH-------HHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 999887649-------9999999999889989999798899999
No 125
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=81.29 E-value=4.4 Score=20.62 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=23.5
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCC
Q ss_conf 999999999879889996158656888875399
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~ 51 (300)
|......|.+.||+|+.+|+|.+-...|+..+.
T Consensus 12 GLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~ 44 (414)
T COG1004 12 GLVTGACLAELGHEVVCVDIDESKVELLNKGIS 44 (414)
T ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCC
T ss_conf 887899998709848999578899999867999
No 126
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=80.83 E-value=4.6 Score=20.52 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=28.4
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28983678712788999999999999987988999615865
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS 41 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~ 41 (300)
++++.||.+ -=|+++++.|.+.|++|.+++.+++
T Consensus 7 v~lITGgs~-------GIG~a~a~~la~~G~~V~~~~r~~~ 40 (246)
T PRK05653 7 TALVTGASR-------GIGRAIALRLAADGARVVIYDSNEE 40 (246)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 899938975-------8999999999987999999979999
No 127
>PRK06139 short chain dehydrogenase; Provisional
Probab=80.64 E-value=4.6 Score=20.48 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=29.2
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf 289836787127889999999999999879889996158656888
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV 45 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~ 45 (300)
++||.|+.| -=|++++..|-+.|++|.+++-+++....
T Consensus 8 vvlITGASs-------GIG~aiA~~~A~~Ga~Vvl~~R~~~~L~~ 45 (324)
T PRK06139 8 VVVITGASS-------GIGRATAEAFARRGARLVLAARDEEALFE 45 (324)
T ss_pred EEEEECHHH-------HHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 799938254-------99999999999879989999899999999
No 128
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=80.43 E-value=4.7 Score=20.43 Aligned_cols=78 Identities=22% Similarity=0.320 Sum_probs=41.8
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC---------------------------------CHHHHHH
Q ss_conf 2898367871278899999999999998798899961586---------------------------------5688887
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------------------SVGLVLA 47 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~---------------------------------~~~~~l~ 47 (300)
||++..-.-+.-...-.....++++|.+.||+|.++.... .....+.
T Consensus 2 Iaivt~~y~P~~GG~~~~~~~La~~L~~~GheV~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (374)
T cd03817 2 IGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEVVVVRPFRVPTFKYPDFRLPLPIPRALIIILK 81 (374)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 89995898999980999999999999977998999972798877543576289843677765213455557999999998
Q ss_pred HCCCCEEEECCCCCCCCCCHHH-HHHHHHHHHCCC
Q ss_conf 5399899992548843431023-566643210023
Q gi|254781179|r 48 HLKPDLAFNVLHGNFGEDGLVQ-AILELLEIPYTH 81 (300)
Q Consensus 48 ~~~~D~vf~~lhG~~gEdg~iq-~~le~~~ipy~G 81 (300)
..+||+|.. |..+. -|.+. -+....++|++.
T Consensus 82 ~~~~DvIh~--~~~~~-~~~~a~~~~~~~~ip~V~ 113 (374)
T cd03817 82 ELGPDIVHT--HTPFS-LGLLGLRVARKLGIPVVA 113 (374)
T ss_pred HCCCCEEEE--CCHHH-HHHHHHHHHHHCCCCEEE
T ss_conf 669999998--78258-899999999974995999
No 129
>PRK07825 short chain dehydrogenase; Provisional
Probab=79.61 E-value=5 Score=20.27 Aligned_cols=41 Identities=32% Similarity=0.355 Sum_probs=31.3
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH
Q ss_conf 289836787127889999999999999879889996158656888875
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH 48 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~ 48 (300)
++++.||.|. =|++++..|.+.|.+|.+.+.++.....+..
T Consensus 7 vvlITGassG-------IG~a~A~~la~~Ga~V~i~~r~~~~l~~~~~ 47 (273)
T PRK07825 7 VIAITGGARG-------IGLATARALAALGAKVAIGDLDEALAKESAA 47 (273)
T ss_pred EEEEECCCCH-------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
T ss_conf 8999262339-------9999999999879989999799999999998
No 130
>KOG1447 consensus
Probab=79.41 E-value=5.1 Score=20.23 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=9.0
Q ss_pred HHHHHHCCCEEEEEC
Q ss_conf 999998798899961
Q gi|254781179|r 23 ASALEDAGFKVSQID 37 (300)
Q Consensus 23 ~~aL~~~g~~v~~id 37 (300)
.+-|++.|..|--+.
T Consensus 28 K~~l~k~Gv~vQ~F~ 42 (412)
T KOG1447 28 KEILSKNGVRVQRFF 42 (412)
T ss_pred HHHHHHCCEEEEEEE
T ss_conf 788986490589999
No 131
>PRK12446 N-acetylglucosaminyl transferase; Reviewed
Probab=79.38 E-value=5.1 Score=20.22 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=27.6
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 89836787127889999999999999879889996158
Q gi|254781179|r 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD 39 (300)
Q Consensus 2 ~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~ 39 (300)
.+|+||.+.=| +--|.++++.|++.|++|..+...
T Consensus 4 Iii~~GGTGGH---i~Palala~~L~~~~~~v~~ig~~ 38 (352)
T PRK12446 4 IVFTGGGSAGH---VTPNLAIIPKLIEDNWDISYIGSH 38 (352)
T ss_pred EEEEECCCHHH---HHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99995875888---999999999998489959999889
No 132
>PRK06179 short chain dehydrogenase; Provisional
Probab=79.31 E-value=5.1 Score=20.20 Aligned_cols=32 Identities=34% Similarity=0.516 Sum_probs=25.8
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 289836787127889999999999999879889996158
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD 39 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~ 39 (300)
++|+.||.|. =|+++++.|.+.|++|+..+-+
T Consensus 6 valITGassG-------IG~a~A~~la~~G~~V~~~~r~ 37 (270)
T PRK06179 6 VALVTGASSG-------IGRATAEALARAGYRVFGTSRN 37 (270)
T ss_pred EEEEECCCCH-------HHHHHHHHHHHCCCEEEEEECC
T ss_conf 8999072469-------9999999999879999999689
No 133
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=79.25 E-value=4.9 Score=20.33 Aligned_cols=31 Identities=39% Similarity=0.502 Sum_probs=26.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
|||+-+|++ |.+.+..|.++||+|.+++-..
T Consensus 146 VAVIGsGPA---------GLsaA~~Lar~G~~VtVfE~~~ 176 (472)
T PRK12810 146 VAVVGSGPA---------GLAAADQLARAGHKVTVFERDD 176 (472)
T ss_pred EEEECCCHH---------HHHHHHHHHHCCCEEEEEECCC
T ss_conf 999897789---------9999999986697589972577
No 134
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=79.13 E-value=5.2 Score=20.17 Aligned_cols=60 Identities=18% Similarity=0.228 Sum_probs=32.7
Q ss_pred HHHHHCCCEEEEEC--------CCCCHHHHHHHCCCCEEEECCCCCC-C--CCCH-HHHHHHHHHHHCCCCC
Q ss_conf 99998798899961--------5865688887539989999254884-3--4310-2356664321002310
Q gi|254781179|r 24 SALEDAGFKVSQID--------VDRSVGLVLAHLKPDLAFNVLHGNF-G--EDGL-VQAILELLEIPYTHSG 83 (300)
Q Consensus 24 ~aL~~~g~~v~~id--------~~~~~~~~l~~~~~D~vf~~lhG~~-g--Edg~-iq~~le~~~ipy~Gs~ 83 (300)
+.|++.|.++..+. ...+....+...++|+|+|.-.+.. . .||. +-...-.++|||+-+-
T Consensus 37 ~~l~~~Gi~~~~v~k~~e~~~~~~p~i~d~i~~g~i~lVINtp~~~~~~~~~~g~~iRr~Av~~~Ip~~T~~ 108 (116)
T cd01423 37 DFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLITNP 108 (116)
T ss_pred HHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEECH
T ss_conf 999986996579878624678999669999976986899988899986433545899999997599989779
No 135
>PRK05872 short chain dehydrogenase; Provisional
Probab=79.02 E-value=5.2 Score=20.15 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=31.6
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH
Q ss_conf 289836787127889999999999999879889996158656888875
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH 48 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~ 48 (300)
++|+.||.| -=|+++++.|.+.|++|.+++.+++-...+..
T Consensus 11 valITGass-------GIG~aiA~~la~~Ga~Vvl~dr~~~~l~~~~~ 51 (296)
T PRK05872 11 VVFVTGAAR-------GVGAELARRLHARGAKVALVDLEEAELAALAA 51 (296)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
T ss_conf 799927105-------89999999999879989999899999999999
No 136
>PRK07109 short chain dehydrogenase; Provisional
Probab=78.78 E-value=5.3 Score=20.10 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=27.1
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 289836787127889999999999999879889996158656
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV 42 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~ 42 (300)
|+||.|+.|. =|++++..+-+.|++|.+++-+++.
T Consensus 10 vVvITGASsG-------IGra~A~~fA~~Ga~Vvl~aR~~~~ 44 (338)
T PRK07109 10 VVVITGASAG-------VGRATARAFARRGAKVVLLARGEEG 44 (338)
T ss_pred EEEEECCCCH-------HHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 8999484349-------9999999999879989999899999
No 137
>PRK08267 short chain dehydrogenase; Provisional
Probab=78.62 E-value=5.3 Score=20.07 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=30.8
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
Q ss_conf 28983678712788999999999999987988999615865688887
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA 47 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~ 47 (300)
++++.||.|. =|++++..|.+.|++|.+.|.+++....+.
T Consensus 3 ~vlITGassG-------IG~a~A~~~a~~G~~V~~~~r~~~~l~~~~ 42 (258)
T PRK08267 3 SIFITGAASG-------IGRATARLFAARGWRVGAYDINEDGLAALA 42 (258)
T ss_pred EEEEECCCCH-------HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 8999072268-------999999999987999999988899999999
No 138
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=78.25 E-value=5.5 Score=20.00 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=28.1
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28983678712788999999999999987988999615865
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS 41 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~ 41 (300)
++++.||.+ -=|+++++.|-+.|++|.+.+.++.
T Consensus 8 ~alITGgs~-------GIG~aia~~la~~G~~V~~~~r~~~ 41 (253)
T PRK12826 8 VALVTGAAR-------GIGRAIAVRFAADGADVIVVDICGQ 41 (253)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 899948977-------8999999999987998999989889
No 139
>PRK07454 short chain dehydrogenase; Provisional
Probab=77.90 E-value=5.6 Score=19.94 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=29.2
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf 28983678712788999999999999987988999615865688
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL 44 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~ 44 (300)
+||+.|+.| -=|++++..|-+.|++|.+++-+.+...
T Consensus 8 valITGas~-------GIG~a~A~~la~~G~~V~l~~R~~~~l~ 44 (241)
T PRK07454 8 TALITGASR-------GIGKATALAFAKAGWDLALVARSQDALE 44 (241)
T ss_pred EEEECCCCC-------HHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 899917587-------8999999999987998999989999999
No 140
>PRK10538 3-hydroxy acid dehydrogenase; Provisional
Probab=77.70 E-value=5.7 Score=19.90 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=30.5
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
Q ss_conf 28983678712788999999999999987988999615865688887
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA 47 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~ 47 (300)
|+|+.||.| -=|+++++.|.+.|++|...+-+.+....+.
T Consensus 2 VvlVTGass-------GIG~a~A~~la~~Ga~Vv~~~r~~~~l~~l~ 41 (248)
T PRK10538 2 IVLVTGATA-------GFGECITRRFIQNGHKVIATGRRQERLQELK 41 (248)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 999988866-------9999999999987999999989999999999
No 141
>PRK05855 short chain dehydrogenase; Validated
Probab=76.65 E-value=6.1 Score=19.71 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=7.0
Q ss_pred CCCCHHHHHHHHHHH
Q ss_conf 399989999999997
Q gi|254781179|r 281 AGYSFRELLLWMVED 295 (300)
Q Consensus 281 ~G~s~~~li~~ii~~ 295 (300)
.+++-++.=+.|++.
T Consensus 530 ~~~~Pe~vA~~Il~a 544 (582)
T PRK05855 530 RGYGPEKVAKAIVSA 544 (582)
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 599999999999999
No 142
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=76.04 E-value=6.3 Score=19.61 Aligned_cols=58 Identities=40% Similarity=0.622 Sum_probs=35.3
Q ss_pred HHHHHHHHHCCCEEEEECCCCC-------------------------------------HHHHHHHCCCCEEEECC--CC
Q ss_conf 9999999987988999615865-------------------------------------68888753998999925--48
Q gi|254781179|r 20 KACASALEDAGFKVSQIDVDRS-------------------------------------VGLVLAHLKPDLAFNVL--HG 60 (300)
Q Consensus 20 ~~i~~aL~~~g~~v~~id~~~~-------------------------------------~~~~l~~~~~D~vf~~l--hG 60 (300)
++.+++|+ .+.+|+.+-++++ +...+++.+||+|+.=+ .+
T Consensus 17 ~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~~~~~av~GTPaDCV~lal~~l~~~~~pDLVvSGIN~G~ 95 (252)
T COG0496 17 RALARALR-EGADVTVVAPDREQSGASHSLTLHEPLRVRQVDNGAYAVNGTPADCVILGLNELLKEPRPDLVVSGINAGA 95 (252)
T ss_pred HHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCC
T ss_conf 99999986-27979998269877454344003567232472365289358818999999998646789998996764788
Q ss_pred CCCCC----CHHHHHHH--HHHHH
Q ss_conf 84343----10235666--43210
Q gi|254781179|r 61 NFGED----GLVQAILE--LLEIP 78 (300)
Q Consensus 61 ~~gEd----g~iq~~le--~~~ip 78 (300)
+.|+| |+|.+.+| ++|||
T Consensus 96 Nlg~dv~ySGTVaaA~Ea~~~Gip 119 (252)
T COG0496 96 NLGDDVIYSGTVAAAMEAALLGIP 119 (252)
T ss_pred CCCCCEEEEEHHHHHHHHHHCCCC
T ss_conf 655113420149999999872964
No 143
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=75.88 E-value=6.4 Score=19.59 Aligned_cols=16 Identities=31% Similarity=0.204 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHCC
Q ss_conf 9999999999999879
Q gi|254781179|r 15 SLSSGKACASALEDAG 30 (300)
Q Consensus 15 Sl~S~~~i~~aL~~~g 30 (300)
|+-|-.-+.+.|++.|
T Consensus 125 a~SSTaIv~k~L~e~~ 140 (558)
T PRK10669 125 STASTVVLLRALEERQ 140 (558)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 8625999999999851
No 144
>pfam11379 DUF3182 Protein of unknown function (DUF3182). This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=75.45 E-value=4.1 Score=20.80 Aligned_cols=59 Identities=17% Similarity=0.273 Sum_probs=43.7
Q ss_pred CCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHCCCC-CCCCCCCCCCCCC-CEEEEEEC
Q ss_conf 05862564324776421143259899999886300366-8854223335788-45788731
Q gi|254781179|r 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN-HGDQLLIEQYVDG-IELTCGVM 182 (300)
Q Consensus 124 ~~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~~~~-~~~~vlVEefI~G-~E~~v~Vl 182 (300)
-..|+=+||..+-++.|..++.+..+|+.++....... ....+.+|+=++. .-|+|+-+
T Consensus 135 ~~G~VRlK~~~a~gG~GQ~vv~d~~~Le~~L~a~~~~~l~~~GlVLE~~L~~~~TySVGqv 195 (355)
T pfam11379 135 KGGPVRLKPPRACGGRGQQVVADADALDAALAALDDRELAAHGLVLEEDLDQPTTYSVGQV 195 (355)
T ss_pred CCCCEEECCCCCCCCCCCEEECCHHHHHHHHHCCCHHHHHHCCEEEECCCCCCCEEEEEEE
T ss_conf 3797255056223788855743899999998727988898668687402577722555559
No 145
>PRK11749 putative oxidoreductase; Provisional
Probab=74.74 E-value=6.5 Score=19.53 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=25.4
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 289836787127889999999999999879889996158
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD 39 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~ 39 (300)
|||+-+|++ |-+.+..|.+.||+|.+++-.
T Consensus 143 VAIIGaGPA---------GLsAA~~Lar~G~~VtVfE~~ 172 (460)
T PRK11749 143 VAVIGAGPA---------GLTAAHRLARKGYDVTIFEAR 172 (460)
T ss_pred EEEECCCHH---------HHHHHHHHHHCCCEEEEEECC
T ss_conf 999896789---------999999999769847997047
No 146
>pfam03749 SfsA Sugar fermentation stimulation protein. This family contains Sugar fermentation stimulation proteins. Which is probably a regulatory factor involved in maltose metabolism. SfsA has been shown to bind DNA and it contains a helix-turn-helix motif that probably binds DNA at its C-terminus.
Probab=74.64 E-value=6.4 Score=19.55 Aligned_cols=50 Identities=22% Similarity=0.326 Sum_probs=21.8
Q ss_pred EEEEEEEEECCCCEEEEEEECCCCCCC-HHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 579999997689839999747265888-223899999983999899999999
Q gi|254781179|r 243 ISRSDFLFDPLSRKVFWLEINVQPGMT-PVSIFPEMAAYAGYSFRELLLWMV 293 (300)
Q Consensus 243 ~~rvDf~~d~~~g~~~~lEvN~~PGlt-~~s~~p~~~~~~G~s~~~li~~ii 293 (300)
=+|+||.++. +++..++||-...=.. ...+||-+-..-|.-+-+-|..++
T Consensus 102 ~SR~Dfll~~-~~~~~~vEVKsvtL~~~~~a~FPDa~T~RG~KHl~eL~~~~ 152 (215)
T pfam03749 102 NSRIDFLLKE-PEGRCYVEVKSVTLSKDGVAMFPDAPTARGQKHLRELIALA 152 (215)
T ss_pred CCEEEEEEEC-CCCCEEEEEEEEEECCCCEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 7338999975-99608999963664439989895962265899999999999
No 147
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=74.36 E-value=7 Score=19.34 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=25.2
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 289836787127889999999999999879889996158
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD 39 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~ 39 (300)
|||+-+|+. |.+++..|.+.||+|.+.+..
T Consensus 540 VAVIGsGPA---------GLaAA~~Lar~Gh~VTVFEk~ 569 (1012)
T TIGR03315 540 VAVIGAGPA---------GLSAGYFLARAGHPVTVFEKK 569 (1012)
T ss_pred EEEECCCHH---------HHHHHHHHHHCCCCEEEEECC
T ss_conf 999897789---------999999999779956998158
No 148
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=73.99 E-value=7.1 Score=19.28 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=23.2
Q ss_pred CEEEE----CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 28983----67871278899999999999998798899961
Q gi|254781179|r 1 MAVLM----GGISSEREVSLSSGKACASALEDAGFKVSQID 37 (300)
Q Consensus 1 i~vl~----GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id 37 (300)
|+++| ||. =..+..++++|.+.||+|.++-
T Consensus 3 I~i~~~P~~GG~-------e~~v~~La~~L~~~GHeV~vit 36 (371)
T cd04962 3 IGIVCYPTYGGS-------GVVATELGKALARRGHEVHFIT 36 (371)
T ss_pred EEEECCCCCCCH-------HHHHHHHHHHHHHCCCEEEEEE
T ss_conf 999899999869-------9999999999997599999995
No 149
>PRK08263 short chain dehydrogenase; Provisional
Probab=73.58 E-value=7.3 Score=19.22 Aligned_cols=42 Identities=19% Similarity=0.148 Sum_probs=30.2
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHC
Q ss_conf 2898367871278899999999999998798899961586568888753
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL 49 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~ 49 (300)
++++.|+.| -=|++++..|.+.|++|+..+-+.+-...+...
T Consensus 5 v~lITGass-------GIG~a~A~~la~~G~~Vv~~~R~~~~l~~l~~~ 46 (275)
T PRK08263 5 VWFITGASR-------GFGREWTEAALERGDRVVATARDTATLADLAER 46 (275)
T ss_pred EEEEECCCH-------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
T ss_conf 899946743-------999999999998799899997989999999997
No 150
>PRK05989 cobN cobaltochelatase; Reviewed
Probab=73.40 E-value=7.3 Score=19.19 Aligned_cols=64 Identities=22% Similarity=0.205 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHCCCEEEEECCC--------CCHHHHHHHC--CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9999999999879889996158--------6568888753--99899992548843431023566643210023
Q gi|254781179|r 18 SGKACASALEDAGFKVSQIDVD--------RSVGLVLAHL--KPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 (300)
Q Consensus 18 S~~~i~~aL~~~g~~v~~id~~--------~~~~~~l~~~--~~D~vf~~lhG~~gEdg~iq~~le~~~ipy~G 81 (300)
-..++.++|++.|+.++.+... ..+...+... .||+++|+..-..+....-...|+.+|+|+.-
T Consensus 214 ~idaLi~aLe~~G~~~ipvf~~slk~~~~~~~v~~~~~~~~~~vd~iin~t~F~~~~~~~~~~~l~~l~vPVlq 287 (1251)
T PRK05989 214 PIDALIAALEARGLNPLPVFVSSLKDRGSEEVLEDLLGEADAVVDVLVNTTAFAAGAAAAPVAVLAALDVPVLQ 287 (1251)
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHCCCCEEE
T ss_conf 99999999997899489997177776126899999996079977099957842367875430148877998897
No 151
>PRK12321 cobN cobaltochelatase; Reviewed
Probab=73.35 E-value=6.9 Score=19.36 Aligned_cols=62 Identities=26% Similarity=0.291 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHCCCEEEEECCCC--------CHHHHHHHCCCCEEEECCCC-CCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99999999998798899961586--------56888875399899992548-843431023566643210023
Q gi|254781179|r 18 SGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKPDLAFNVLHG-NFGEDGLVQAILELLEIPYTH 81 (300)
Q Consensus 18 S~~~i~~aL~~~g~~v~~id~~~--------~~~~~l~~~~~D~vf~~lhG-~~gEdg~iq~~le~~~ipy~G 81 (300)
-..+++++|++.|+.++.+.... .+...+...+||+|+|+..= ..+.++ ...|+.+++|+.-
T Consensus 217 ~idaLi~aLe~rGl~~ipvf~~sLkd~~~~~~~~~~~~~~~~~~iin~T~Fs~~~~~~--~~~l~~ldvPVlQ 287 (1101)
T PRK12321 217 PVDALIAALRARGFAAVGLFVPSLKAPEAAAWLRAALAALRPAAIVNATAFSARGDDG--ATPLDAADCPVFQ 287 (1101)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC--CCHHHHCCCCEEE
T ss_conf 9999999999779972578734788700889999973447987898564103678875--3747766998896
No 152
>PRK00726 murG N-acetylglucosaminyl transferase; Provisional
Probab=72.83 E-value=7.6 Score=19.10 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=25.6
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 98367871278899999999999998798899961
Q gi|254781179|r 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQID 37 (300)
Q Consensus 3 vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id 37 (300)
+|+||.+.=| +.-|.+++++|++.||+|..+.
T Consensus 5 ~i~~GGTGGH---i~Palala~~L~~~g~ev~~ig 36 (359)
T PRK00726 5 LLAGGGTGGH---VFPALALAEELKKRGWEVLWLG 36 (359)
T ss_pred EEEECCCHHH---HHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9995886899---9999999999983879899997
No 153
>TIGR00408 proS_fam_I prolyl-tRNA synthetase; InterPro: IPR004499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by IPR002314 from INTERPRO, which recognises tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi (Lyme desease spirochete). The other family, IPR004500 from INTERPRO, includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis sp. (strain PCC6803), and one of the two prolyl-tRNA synthetases of Saccharomyces cerevisiae (Baker's yeast).; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=72.80 E-value=5.6 Score=19.92 Aligned_cols=28 Identities=18% Similarity=-0.040 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 66655444444457753487645799999
Q gi|254781179|r 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 (300)
Q Consensus 221 ~~~~~~i~~~a~~~~~alg~~g~~rvDf~ 249 (300)
+|..+++.++|.++...|.-. -.||.+.
T Consensus 323 ~E~~~~~~e~a~~v~~~Lk~~-~iRv~~D 350 (533)
T TIGR00408 323 DEENKKVMELARKVEDKLKKL-GIRVHLD 350 (533)
T ss_pred CCCCHHHHHHHHHHHHHHHCC-EEEEEEE
T ss_conf 214778999999999877304-1007970
No 154
>TIGR01986 glut_syn_euk glutathione synthetase; InterPro: IPR005615 This entry represents eukaryotic glutathione synthetase (6.3.2.3 from EC) (GSS), a homodimeric enzyme that catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to phosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis, the first step being catalysed by gamma-glutamylcysteine synthetase . In humans, defects in GSS are inherited in an autosomal recessive way and are the cause of severe metabolic acidosis, 5-oxoprolinuria, and increased rate of haemolysis and defective function of the central nervous system. ; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process.
Probab=72.49 E-value=3.2 Score=21.48 Aligned_cols=15 Identities=13% Similarity=0.202 Sum_probs=7.0
Q ss_pred HHHHHHHHHCCCCCE
Q ss_conf 444457753487645
Q gi|254781179|r 229 RLAFLAHQAIGCRGI 243 (300)
Q Consensus 229 ~~a~~~~~alg~~g~ 243 (300)
..-..+...||+.|.
T Consensus 449 ~~~~~~isELGiyG~ 463 (507)
T TIGR01986 449 AEKVQVISELGIYGV 463 (507)
T ss_pred CCCCCCEEECCCEEE
T ss_conf 444453131120157
No 155
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, catalytic subunit; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain . The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=71.84 E-value=8 Score=18.96 Aligned_cols=102 Identities=23% Similarity=0.300 Sum_probs=65.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCC--CEEEEECCCCCHHHHHH-----HCCCC-EEEECCCCCCCCCCHHHHHH
Q ss_conf 289836787127889999999999999879--88999615865688887-----53998-99992548843431023566
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAG--FKVSQIDVDRSVGLVLA-----HLKPD-LAFNVLHGNFGEDGLVQAIL 72 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g--~~v~~id~~~~~~~~l~-----~~~~D-~vf~~lhG~~gEdg~iq~~l 72 (300)
|+||.|=.| =+.+.+.+++.|++.| |++..+-.+|......+ +.+-- -||++.=| | --+|+|..
T Consensus 1 V~iIMGS~S-----D~~~m~~a~~~L~~fgi~~e~~V~SAHRTP~~~~~ya~~a~~~G~P~ViIAgAG--g-aAHLPGmv 72 (159)
T TIGR01162 1 VGIIMGSDS-----DLETMKKAAEILEEFGIPYELRVVSAHRTPELMFEYAKEAEERGIPKVIIAGAG--G-AAHLPGMV 72 (159)
T ss_pred CEEECCCCC-----CHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCC--C-CCCCCCCC
T ss_conf 968536725-----478999999999855996678986067780889999999986789979984035--1-13340100
Q ss_pred HHH-HHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCE
Q ss_conf 643-21002310023320365001000021210000121
Q gi|254781179|r 73 ELL-EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 (300)
Q Consensus 73 e~~-~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~ 110 (300)
-.+ .+|.+|.++.+..+.--=.+..-+=.=.|||++--
T Consensus 73 Aa~T~~PVIGVPv~~~~l~G~DSLlSiVQMP~GvPVATv 111 (159)
T TIGR01162 73 AALTTLPVIGVPVPSKALSGLDSLLSIVQMPAGVPVATV 111 (159)
T ss_pred CCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEE
T ss_conf 114787755034773424521354454307589746530
No 156
>pfam06690 DUF1188 Protein of unknown function (DUF1188). This family consists of several hypothetical archaeal proteins of around 260 residues in length which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=71.70 E-value=4.9 Score=20.29 Aligned_cols=36 Identities=25% Similarity=0.453 Sum_probs=24.6
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH
Q ss_conf 898367871278899999999999998798899961586568888
Q gi|254781179|r 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL 46 (300)
Q Consensus 2 ~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l 46 (300)
+|+||- -.||..+++.|.+. ++|+++|+...+...+
T Consensus 45 ~lIfG~--------YltG~~iA~~L~k~-~eV~lvDi~p~lk~~l 80 (252)
T pfam06690 45 ALIFGA--------YLTGAFIAEALDKD-CEVTVVDIHPHLKEIL 80 (252)
T ss_pred EEEEEE--------EEEHHHHHHHHCCC-CEEEEEECCHHHHHHH
T ss_conf 689976--------54117999873257-6299981848999862
No 157
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=71.67 E-value=8 Score=18.94 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=24.8
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 98367871278899999999999998798899961
Q gi|254781179|r 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQID 37 (300)
Q Consensus 3 vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id 37 (300)
+|+||.+.=| +.-+.+++++|++.||+|..+.
T Consensus 3 ~i~~GGTGGH---i~Palala~~L~~~g~~V~~i~ 34 (350)
T cd03785 3 LIAGGGTGGH---IFPALALAEELRERGAEVLFLG 34 (350)
T ss_pred EEEECCCHHH---HHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9994785899---9999999999997879899998
No 158
>PRK12831 putative oxidoreductase; Provisional
Probab=71.55 E-value=8.1 Score=18.92 Aligned_cols=31 Identities=29% Similarity=0.549 Sum_probs=26.2
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
||||-+|++ |.+.+..|.+.||+|.+++-..
T Consensus 143 VAVIGsGPA---------GLsaA~~La~~G~~VtVfE~~~ 173 (464)
T PRK12831 143 VAVIGSGPA---------GLTCAGDLAKKGYDVTIFEALH 173 (464)
T ss_pred EEEECCCHH---------HHHHHHHHHHCCCCEEEECCCC
T ss_conf 999897689---------9999999997699179982788
No 159
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=71.26 E-value=5.8 Score=19.85 Aligned_cols=58 Identities=28% Similarity=0.327 Sum_probs=26.2
Q ss_pred HHHHHHCCCEEEEE-----CCCCCHHHHHHHCCCCEEEECCC--CCC-CCCC-HHHHHHHHHHHHCC
Q ss_conf 99999879889996-----15865688887539989999254--884-3431-02356664321002
Q gi|254781179|r 23 ASALEDAGFKVSQI-----DVDRSVGLVLAHLKPDLAFNVLH--GNF-GEDG-LVQAILELLEIPYT 80 (300)
Q Consensus 23 ~~aL~~~g~~v~~i-----d~~~~~~~~l~~~~~D~vf~~lh--G~~-gEdg-~iq~~le~~~ipy~ 80 (300)
++.|++.|.++..+ +...+....+...++|+|+|... |.. -+|| .+-.....++||+.
T Consensus 23 a~~L~~~Gi~v~~l~~ki~~g~~~i~~~i~~~~IdlVInt~~~~~~~~~~d~~~iRr~a~~~~Ip~~ 89 (90)
T smart00851 23 AKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEEEEECCCCCCHHHHCCCCHHHHHHCCCCCCC
T ss_conf 9999975997104302443561048998197887999984687632365358889999880898870
No 160
>pfam02310 B12-binding B12 binding domain. This domain binds to B12 (adenosylcobamide), it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase.
Probab=71.17 E-value=5.2 Score=20.13 Aligned_cols=38 Identities=26% Similarity=0.266 Sum_probs=28.6
Q ss_pred HHHHHHHHHHCCCEEEEECCCC---CHHHHHHHCCCCEEEE
Q ss_conf 9999999998798899961586---5688887539989999
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDR---SVGLVLAHLKPDLAFN 56 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~---~~~~~l~~~~~D~vf~ 56 (300)
...++..|++.||+|..+|.+. ++...+...+||+|-.
T Consensus 17 l~~la~~l~~~G~~V~~~d~~~~~~~i~~~i~~~~pdiVgi 57 (121)
T pfam02310 17 LNYVAAALRAAGFEVILLGADVPPEDIVEAIRAENPDVVGL 57 (121)
T ss_pred HHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHCCCCEEEE
T ss_conf 99999999985995001024799999999999809999999
No 161
>PRK07024 short chain dehydrogenase; Provisional
Probab=70.70 E-value=8.4 Score=18.80 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=28.8
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
Q ss_conf 8983678712788999999999999987988999615865688887
Q gi|254781179|r 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA 47 (300)
Q Consensus 2 ~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~ 47 (300)
++|.|+.| . =|++++..|.+.|+++.+++-+.+....+.
T Consensus 5 VlITGass---G----IG~a~A~~la~~G~~v~l~~R~~~~L~~~~ 43 (256)
T PRK07024 5 VFITGASS---G----IGQALAREYARQGATLGLVARRTDALQAFA 43 (256)
T ss_pred EEEECCCH---H----HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 99984602---9----999999999988998999989889999999
No 162
>PRK05876 short chain dehydrogenase; Provisional
Probab=70.64 E-value=8.5 Score=18.79 Aligned_cols=36 Identities=33% Similarity=0.360 Sum_probs=29.8
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH
Q ss_conf 2898367871278899999999999998798899961586568
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG 43 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~ 43 (300)
++|+.||.|. =|+++++.|.+.|.+|.+.|.+++-.
T Consensus 8 vavITGaasG-------IG~a~A~~la~~Ga~Vvi~d~~~~~l 43 (275)
T PRK05876 8 GAVITGGASG-------IGLATGTEFARRGARVVLGDVDKPGL 43 (275)
T ss_pred EEEEECCCCH-------HHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 7999282669-------99999999998799899997988999
No 163
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase; InterPro: IPR012819 Sucrose occupies a central position in the metabolic pathways of all plants and plays a variety of roles including transport sugar, storage reserve, compatible solute, and signal compound . This compound is produced by the combined action of two enzymes, sucrose-phosphate synthase (2.4.1.14 from EC) and sucrose-phosphate phosphatase (3.1.3.24 from EC), via the intermediate sucrose 6-phosphate. Several studies have shown a positive correlation between sucrose-phosphate synthase activity and plant growth rate and yield in agronomically important plants, though direct proof of a causal link is lacking. This entry represents sucrose-phosphate synthase from plants, which is known to exist in multigene families in several species of both monocots and dicots. The enzyme contains an N-terminal domain glucosyltransferase domain, a variable linker region, and a C-terminal domain similar to that of sucrose-phosphate phosphatase, the next and final enzyme of sucrose biosynthesis. The C-terminal domain is likely to serve a binding - not a catalytic - function, as sucrose-phosphate phosphatase is always encoded by a distinct protein. ; GO: 0046524 sucrose-phosphate synthase activity, 0005985 sucrose metabolic process.
Probab=70.51 E-value=1.4 Score=23.86 Aligned_cols=46 Identities=26% Similarity=0.561 Sum_probs=35.7
Q ss_pred CEEEE-CCCCCCCCCCHHHHHHH-HHHHHCCCCCHHHHHHCCCCHHCCCCCCC
Q ss_conf 89999-25488434310235666-43210023100233203650010000212
Q gi|254781179|r 52 DLAFN-VLHGNFGEDGLVQAILE-LLEIPYTHSGILASALSMDKMRSKQVVSS 102 (300)
Q Consensus 52 D~vf~-~lhG~~gEdg~iq~~le-~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~ 102 (300)
.-||| ++||=|..-|...++|- .+|||.+ ....+|+.||.. ++|+.
T Consensus 308 ~pVWP~~IHGHYADAGd~AAlLSGALNVPMv---lTGHsLGRdKLE--QLLkq 355 (1072)
T TIGR02468 308 KPVWPYVIHGHYADAGDSAALLSGALNVPMV---LTGHSLGRDKLE--QLLKQ 355 (1072)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHCCHHHH---HHCCCCCHHHHH--HHHHH
T ss_conf 4215626506300468999987411021257---615433423699--99971
No 164
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=70.21 E-value=8.6 Score=18.73 Aligned_cols=79 Identities=18% Similarity=0.204 Sum_probs=42.7
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC--------------------------------CHHHHHHH
Q ss_conf 2898367871278899999999999998798899961586--------------------------------56888875
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------------------------------SVGLVLAH 48 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~--------------------------------~~~~~l~~ 48 (300)
|++++.-.-++...--....+++++|.+.||+|.++-.+. .+...+..
T Consensus 2 Il~i~~~f~P~~GG~e~~~~~la~~L~~~Gh~V~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (364)
T cd03814 2 IAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPARVVPVPSVPLPGYPEIRLALPPRRRVRRLLDA 81 (364)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCEECCCHHHHHHHHHHH
T ss_conf 89993888999884999999999999977998999978997655556634678667468887630020329999999986
Q ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 399899992548843431023566643210023
Q gi|254781179|r 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 (300)
Q Consensus 49 ~~~D~vf~~lhG~~gEdg~iq~~le~~~ipy~G 81 (300)
.+||+|.-..++..|--+ --++...++|++.
T Consensus 82 ~~pDiIh~~~~~~~~~~a--~~~~~~~~ip~i~ 112 (364)
T cd03814 82 FAPDVVHIATPGPLGLAA--LRAARRLGIPVVT 112 (364)
T ss_pred CCCCEEEECCCCHHHHHH--HHHHHHCCCCEEE
T ss_conf 599999987841678999--9999975997899
No 165
>PRK12342 putative electron transfer flavoprotein YdiQ; Provisional
Probab=70.19 E-value=8.7 Score=18.73 Aligned_cols=56 Identities=14% Similarity=0.077 Sum_probs=33.5
Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCCHHHH-HHHHHHHHCCCCCHHHHHHCCCCHHCCC
Q ss_conf 68888753998999925488434310235-6664321002310023320365001000
Q gi|254781179|r 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQA-ILELLEIPYTHSGILASALSMDKMRSKQ 98 (300)
Q Consensus 42 ~~~~l~~~~~D~vf~~lhG~~gEdg~iq~-~le~~~ipy~Gs~~~~~~l~~dK~~~k~ 98 (300)
+...+++..+|+||-=-+...|..|.+.. +-|++|+|++.. +....+.-++....+
T Consensus 101 La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~-v~~i~~~~~~~~v~R 157 (254)
T PRK12342 101 LAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINA-VSKIQRQGNKLVVER 157 (254)
T ss_pred HHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCEEE-EEEEEEECCEEEEEE
T ss_conf 999999839699999362124898857899998709971667-999997199899999
No 166
>PRK06914 short chain dehydrogenase; Provisional
Probab=70.02 E-value=8.7 Score=18.71 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=27.2
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28983678712788999999999999987988999615865
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS 41 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~ 41 (300)
++++.||.|. =|++++..|.+.|++|+..+-+.+
T Consensus 5 ~alITGassG-------IG~a~A~~la~~G~~V~~~~r~~~ 38 (280)
T PRK06914 5 IAIITGASSG-------FGLLTTLELAKKDYLVIATMRNLE 38 (280)
T ss_pred EEEEECCCCH-------HHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 8999073449-------999999999987998999989889
No 167
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=69.73 E-value=8.9 Score=18.67 Aligned_cols=55 Identities=27% Similarity=0.283 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC---CHHHH---HHHCCCCEEEECCCCCCCC
Q ss_conf 71278899999999999998798899961586---56888---8753998999925488434
Q gi|254781179|r 9 SSEREVSLSSGKACASALEDAGFKVSQIDVDR---SVGLV---LAHLKPDLAFNVLHGNFGE 64 (300)
Q Consensus 9 s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~---~~~~~---l~~~~~D~vf~~lhG~~gE 64 (300)
-.|+++-+.-++.+.+.|++.|++|++.-.+. .+..+ ....++|+.+. +|-.-+.
T Consensus 21 ~~E~~~~l~ia~~l~~~L~~~g~~v~~tr~~d~~~~l~~R~~~an~~~adlfiS-iH~na~~ 81 (172)
T cd02696 21 LKEKDINLAIALKLAKLLEAAGAKVVLTRDDDTFVSLSERVAIANRAGADLFIS-IHANAAP 81 (172)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEE-ECCCCCC
T ss_conf 638999999999999999977988999558985441689999999659999998-1546579
No 168
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.42 E-value=9 Score=18.62 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=28.9
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf 28983678712788999999999999987988999615865688
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL 44 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~ 44 (300)
++++.||.| -=|++++..|-+.|++|.+++.+++-..
T Consensus 8 valITGas~-------GIG~aiA~~la~~Ga~V~l~~r~~~~l~ 44 (238)
T PRK07666 8 NALITGAGR-------GIGRAVAIALAKEGVNVGLLARSEENLK 44 (238)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 899916377-------8999999999987998999989999999
No 169
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=69.03 E-value=9.2 Score=18.57 Aligned_cols=35 Identities=26% Similarity=0.523 Sum_probs=28.8
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 289836787127889999999999999879889996158656
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV 42 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~ 42 (300)
|+|+.||.| -=|+++++.|.+.|++|.+.+.+.+-
T Consensus 4 valITG~s~-------GIG~aia~~la~~Ga~V~i~~~~~~~ 38 (259)
T PRK12384 4 VAVVIGGGQ-------TLGAFLCHGLAEEGYRVAVADINSEK 38 (259)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 899946886-------89999999999879999999798899
No 170
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=68.82 E-value=9.2 Score=18.54 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=12.1
Q ss_pred HHHHHHHHHHCCCEEEEE
Q ss_conf 999999999879889996
Q gi|254781179|r 19 GKACASALEDAGFKVSQI 36 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~i 36 (300)
|-+|+..|+.+|.++..+
T Consensus 39 GINVa~vL~~lG~~~~a~ 56 (310)
T COG1105 39 GINVARVLKDLGIPVTAL 56 (310)
T ss_pred CEEHHHHHHHCCCCCEEE
T ss_conf 355999999729971699
No 171
>pfam02571 CbiJ Precorrin-6x reductase CbiJ/CobK. This family consists of Precorrin-6x reductase EC:1.3.1.54. This enzyme catalyses the reaction: precorrin-6Y + NADP(+) <= precorrin-6X + NADPH. CbiJ and CobK both catalyse the reduction of macocycle in the colbalmin biosynthesis pathway.
Probab=68.75 E-value=9.3 Score=18.54 Aligned_cols=91 Identities=26% Similarity=0.302 Sum_probs=41.1
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCCCCC-CCCCHHHHHHHHHHHHCCC
Q ss_conf 983678712788999999999999987988999615865688887539989999254884-3431023566643210023
Q gi|254781179|r 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF-GEDGLVQAILELLEIPYTH 81 (300)
Q Consensus 3 vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~lhG~~-gEdg~iq~~le~~~ipy~G 81 (300)
+|.||-| | |+.+++.|.+.|+-.+..+.. ..+... .+.......|.+ ++++ +..+|...+|-.+=
T Consensus 4 lilgGT~-e-------~r~la~~L~~~g~~~v~t~~~----~~~~~~-~~~~~~~~~G~l~~~~~-m~~~i~~~~i~~vI 69 (246)
T pfam02571 4 LILGGTT-E-------ARALAAALAAAGVVSVVTSLA----GRTAAP-RLPPLPVRVGGFGGADG-LAAYLREEGIDAVI 69 (246)
T ss_pred EEEEECH-H-------HHHHHHHHHHCCCEEEEECCC----HHHCCC-CCCCCCEEECCCCCHHH-HHHHHHHCCCCEEE
T ss_conf 9997368-9-------999999998569879998475----544376-67885089799899999-99999977997999
Q ss_pred --CCHHHHHHCCCCHHCCCCCCCCEEECCCE
Q ss_conf --10023320365001000021210000121
Q gi|254781179|r 82 --SGILASALSMDKMRSKQVVSSCGVPVCPS 110 (300)
Q Consensus 82 --s~~~~~~l~~dK~~~k~~l~~~gIptp~~ 110 (300)
+-|-|..++. ...+..+..|||.-+|
T Consensus 70 DATHPfA~~is~---na~~a~~~~~ipyiR~ 97 (246)
T pfam02571 70 DATHPFAAQISR---NAAAACKELGVPLLRL 97 (246)
T ss_pred ECCCCCHHHHHH---HHHHHHHHHCCCEEEE
T ss_conf 899996899999---9999999859968996
No 172
>KOG4022 consensus
Probab=68.68 E-value=9.3 Score=18.53 Aligned_cols=59 Identities=31% Similarity=0.470 Sum_probs=40.6
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC-------------------------HHHHHHHCCCCEEEE
Q ss_conf 8983678712788999999999999987988999615865-------------------------688887539989999
Q gi|254781179|r 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-------------------------VGLVLAHLKPDLAFN 56 (300)
Q Consensus 2 ~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~-------------------------~~~~l~~~~~D~vf~ 56 (300)
+|+|||..+ | +.++.+..+..+|.|..+|..++ ....|...+.|.||-
T Consensus 6 VivYGGkGA-----L--GSacv~~FkannywV~siDl~eNe~Ad~sI~V~~~~swtEQe~~v~~~vg~sL~gekvDav~C 78 (236)
T KOG4022 6 VIVYGGKGA-----L--GSACVEFFKANNYWVLSIDLSENEQADSSILVDGNKSWTEQEQSVLEQVGSSLQGEKVDAVFC 78 (236)
T ss_pred EEEECCCCH-----H--HHHHHHHHHHCCEEEEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 999768642-----7--689999997668689997502566566117963775356889999999987624253436999
Q ss_pred CCCCCCCCCCH
Q ss_conf 25488434310
Q gi|254781179|r 57 VLHGNFGEDGL 67 (300)
Q Consensus 57 ~lhG~~gEdg~ 67 (300)
+..|.-|-+..
T Consensus 79 VAGGWAGGnAk 89 (236)
T KOG4022 79 VAGGWAGGNAK 89 (236)
T ss_pred EECCCCCCCCC
T ss_conf 60554577742
No 173
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=68.67 E-value=9.3 Score=18.53 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=36.6
Q ss_pred HCCCCHHCCCCCCCCEEECCCEEEECCCCCHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 03650010000212100001213202220001221058625643247764211432598999998863003668854223
Q gi|254781179|r 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 (300)
Q Consensus 89 l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~~~~~~~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~~~~~~~~vlV 168 (300)
+-.||.+.+.+.+.. |--|+.+-+.++.....+.+--.|+||..|.-+.+|+++.+......... .---+...+.
T Consensus 262 ilsNK~lLplLW~~f--PnHp~LLpt~F~~~~~~k~~~~yv~KPl~gREGaNv~i~~~~~~v~~~~~---G~Yg~eg~Iy 336 (387)
T COG0754 262 ILSNKALLPLLWERF--PNHPNLLPTYFEPDDEEKLGESYVRKPLFGREGANVSIFEDAGKVLDKAD---GPYGEEGMIY 336 (387)
T ss_pred HHCCCCHHHHHHHHC--CCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEEECCCCEEECCC---CCCCCCCHHH
T ss_conf 734510899999867--99834364547887432222455102222566787577725784550378---8867664235
Q ss_pred CCCCC
Q ss_conf 33578
Q gi|254781179|r 169 EQYVD 173 (300)
Q Consensus 169 EefI~ 173 (300)
|+|.+
T Consensus 337 Qe~~~ 341 (387)
T COG0754 337 QEFYP 341 (387)
T ss_pred HHHCC
T ss_conf 54305
No 174
>PRK08643 acetoin reductase; Validated
Probab=68.66 E-value=9.3 Score=18.52 Aligned_cols=37 Identities=30% Similarity=0.422 Sum_probs=29.9
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf 28983678712788999999999999987988999615865688
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL 44 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~ 44 (300)
|||+.||.+ -=|+++++.|.+.|++|.+.|.+++...
T Consensus 4 valVTGg~~-------GIG~aia~~la~~Ga~V~i~d~~~~~~~ 40 (256)
T PRK08643 4 VALVTGAGQ-------GIGFAIAKRLVEDGFKVAIVDYNEETAK 40 (256)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 999957578-------8999999999987999999969889999
No 175
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=68.49 E-value=9.4 Score=18.50 Aligned_cols=46 Identities=26% Similarity=0.325 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECC
Q ss_conf 278899999999999998798899961586568888753998999925
Q gi|254781179|r 11 EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVL 58 (300)
Q Consensus 11 E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~l 58 (300)
|.+.++ +..+...|+..||+|...+..++....+....||+++--+
T Consensus 7 Edd~~~--~~~l~~~L~~~g~~V~~a~~~~~al~~~~~~~~dlvilD~ 52 (223)
T PRK10816 7 EDNALL--RHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDL 52 (223)
T ss_pred ECCHHH--HHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEC
T ss_conf 598999--9999999997899999989999999999757998999979
No 176
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=68.27 E-value=9.5 Score=18.47 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=34.0
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECC
Q ss_conf 9999999998798899961586568888753998999925
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVL 58 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~l 58 (300)
+..+...|++.||+|....-..+....+....||+|+-=+
T Consensus 15 ~~~l~~~L~~~g~~V~~~~~~~~a~~~l~~~~~DlvilDi 54 (224)
T PRK10766 15 RARLQGYFEQEGYRVSEAASGAGMREIMQNQHVDLILLDI 54 (224)
T ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECC
T ss_conf 9999999998799999989999999999608999999889
No 177
>PRK06482 short chain dehydrogenase; Provisional
Probab=68.21 E-value=9.5 Score=18.47 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=24.8
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
+.+|.|+.| -=|+++++.|.+.|++|+...-+.
T Consensus 4 v~lITGaSs-------GiG~ala~~l~~~G~~Vi~t~R~~ 36 (276)
T PRK06482 4 TWFITGASS-------GFGRGLTERLLARGDRVAATVRRP 36 (276)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 899915865-------999999999998899899997898
No 178
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=67.96 E-value=5.3 Score=20.11 Aligned_cols=69 Identities=25% Similarity=0.263 Sum_probs=41.3
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-------------------HHCCC---CEEEECC
Q ss_conf 2898367871278899999999999998798899961586568888-------------------75399---8999925
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------------AHLKP---DLAFNVL 58 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l-------------------~~~~~---D~vf~~l 58 (300)
|+||-||+ +|-..+..+.+.|++|.++|..+.+..++ -...| .++.+++
T Consensus 6 viIIGgGp---------AGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal 76 (408)
T COG2081 6 VIIIGGGP---------AGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSAL 76 (408)
T ss_pred EEEECCCH---------HHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHH
T ss_conf 89988878---------899999988646987999805864221368537887433265058999975898206778898
Q ss_pred CCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 4884343102356664321002
Q gi|254781179|r 59 HGNFGEDGLVQAILELLEIPYT 80 (300)
Q Consensus 59 hG~~gEdg~iq~~le~~~ipy~ 80 (300)
.-..-+| +-.+.|.+||++-
T Consensus 77 ~~ft~~d--~i~~~e~~Gi~~~ 96 (408)
T COG2081 77 ARFTPED--FIDWVEGLGIALK 96 (408)
T ss_pred HHCCHHH--HHHHHHHCCCEEE
T ss_conf 7279899--9999986597157
No 179
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=67.64 E-value=9.8 Score=18.39 Aligned_cols=38 Identities=39% Similarity=0.338 Sum_probs=27.6
Q ss_pred HHHHHHHHHHCCCEEEEECCC---CCHHHHHHHCCCCEEEE
Q ss_conf 999999999879889996158---65688887539989999
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVD---RSVGLVLAHLKPDLAFN 56 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~---~~~~~~l~~~~~D~vf~ 56 (300)
...++..|++.||+|..+|.. ..+...+...+||+|--
T Consensus 5 l~ylaa~L~~~G~~v~~~d~~~~~~~~e~~~~~~~pdvvg~ 45 (127)
T cd02068 5 LAYLAAVLEDAGFIVAEHDVLSADDIVEDIKELLKPDVVGI 45 (127)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCEEEE
T ss_conf 99999999978995799857876203999986499699999
No 180
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit; InterPro: IPR006274 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents the small subunit of the glutamine-dependent form (6.3.5.5 from EC) of carbamoyl phosphate synthase, CPSase II. The small subunit catalyses the hydrolysis of glutamine to ammonia, which in turn used by the large chain to synthesize carbamoyl phosphate. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (6.3.4.16 from EC). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=67.31 E-value=9.9 Score=18.35 Aligned_cols=10 Identities=20% Similarity=-0.018 Sum_probs=6.2
Q ss_pred CEEEEEECCC
Q ss_conf 4578873144
Q gi|254781179|r 175 IELTCGVMGD 184 (300)
Q Consensus 175 ~E~~v~Vl~~ 184 (300)
++.+|.+++=
T Consensus 195 ~~~~Vv~~Df 204 (383)
T TIGR01368 195 KPLRVVVIDF 204 (383)
T ss_pred CCEEEEEEEC
T ss_conf 7359999855
No 181
>PRK13856 two-component response regulator VirG; Provisional
Probab=66.78 E-value=10 Score=18.28 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECC
Q ss_conf 278899999999999998798899961586568888753998999925
Q gi|254781179|r 11 EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVL 58 (300)
Q Consensus 11 E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~l 58 (300)
|-+-++ +..+...|+..||+|....-.......+....||+|+-=+
T Consensus 8 EDD~~l--~~~l~~~L~~~g~~v~~a~~~~~~~~~l~~~~~DlvIlDi 53 (241)
T PRK13856 8 DDDVAM--RHLIVEYLTIHAFKVTAVADSQQFNRVLSSETVDVVVVDL 53 (241)
T ss_pred ECCHHH--HHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEEC
T ss_conf 698999--9999999987799999989999999998659999999969
No 182
>PRK05849 hypothetical protein; Provisional
Probab=66.74 E-value=10 Score=18.28 Aligned_cols=154 Identities=16% Similarity=0.214 Sum_probs=76.8
Q ss_pred EECCCEEEECCCCCHHH---------HHC-CCCEEEEECCC------CCCCCE--EE--E--CCHHHHHHHHHHHCCC--
Q ss_conf 00012132022200012---------210-58625643247------764211--43--2--5989999988630036--
Q gi|254781179|r 105 VPVCPSILVNRFTMDSQ---------HLI-SPPYVIKPLKG------GSSLGI--IV--I--KKDQSIPLDLLQSSSW-- 160 (300)
Q Consensus 105 Iptp~~~~~~~~~~~~~---------~~~-~~P~ivKP~~g------gsS~Gv--~~--v--~~~~el~~~~~~~~~~-- 160 (300)
-.+|+.+.++-.++... ..+ +-|++|..+.- .|.-|. ++ | .+.+++..++.+..+.
T Consensus 25 ~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~iVRSSa~~ED~~~~S~AG~~~S~lnV~~~~~~~l~~ai~~v~~sy~ 104 (782)
T PRK05849 25 AKILPLLLFSVAEWLSNKDKVLQEIQSSFPSDKLIVRSSSRSEDSMSSSNAGAFLSLLNVPADSKDALLKALEKVINSYG 104 (782)
T ss_pred CCCCCEEEEEHHHHHHCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 74797599889998747999999999864899479957873448745666767423248784669999999999999856
Q ss_pred --CCCCCCCCCCCCCCCEEEEEEC--C----CCCCCEEEECCCCCCCCCCCCCCCCCC----CCCCCC---CCCHHHHHH
Q ss_conf --6885422333578845788731--4----444200220255433331100001122----224586---521166655
Q gi|254781179|r 161 --NHGDQLLIEQYVDGIELTCGVM--G----DASLDVTEIAVPKSDFYSYELKYSSLN----STHVLP---AKIPLDIYK 225 (300)
Q Consensus 161 --~~~~~vlVEefI~G~E~~v~Vl--~----~~~~~~~ei~~~~~~~~dy~~Ky~~~~----~~~~~P---a~l~~~~~~ 225 (300)
..+++||||+++++..++ ||+ . +....++........ ++ -.+|. +.++.. ....++..+
T Consensus 105 ~~~~~~~vliQ~m~~~v~~s-GV~ft~d~~~~~py~vin~~~~g~t----~~-VtsG~~~~~~~~~~~~~~~~~~~~~~~ 178 (782)
T PRK05849 105 EADKDDEILVQPMLEDIVLS-GVIMSVDKEDGAPYYVVNYDESGST----DS-VTGGSGGSKTTYYHRSDALVFKPPRLK 178 (782)
T ss_pred CCCCCCEEEEEHHCCCCCEE-EEEEECCCCCCCCEEEEEECCCCCC----CE-EECCCCCCEEEEEECCCCCCCCCHHHH
T ss_conf 68889769972001577458-9996068889997499995588987----67-867878756999963775457867799
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCC
Q ss_conf 44444445775348764579999997689839999747265
Q gi|254781179|r 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 (300)
Q Consensus 226 ~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~P 266 (300)
++..++.++=+.+|. ..--|+|-+|. +|++|++-|-|+-
T Consensus 179 ~li~~~~elE~l~~~-~~lDIEfaid~-~~~l~llQvRPIt 217 (782)
T PRK05849 179 KLIELIRELEALFGC-DFLDIEFAIDE-KEELYILQVRPIT 217 (782)
T ss_pred HHHHHHHHHHHHHCC-CCCCEEEEECC-CCCEEEEEECCCC
T ss_conf 999999999998199-96216999859-9958999943312
No 183
>PRK07326 short chain dehydrogenase; Provisional
Probab=66.68 E-value=10 Score=18.27 Aligned_cols=38 Identities=34% Similarity=0.372 Sum_probs=29.6
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf 289836787127889999999999999879889996158656888
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV 45 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~ 45 (300)
++++.||.| . =|+++++.|.+.|++|.+.+.+++....
T Consensus 7 valITGas~---G----IG~aiA~~la~~Ga~V~i~~r~~~~l~~ 44 (235)
T PRK07326 7 AALVTGGSK---G----IGFAVAEALAAAGYRVAICARDESELEA 44 (235)
T ss_pred EEEEECCCC---H----HHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 999938267---9----9999999999879999999898899999
No 184
>PRK07102 short chain dehydrogenase; Provisional
Probab=66.48 E-value=10 Score=18.25 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=27.2
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf 8983678712788999999999999987988999615865688
Q gi|254781179|r 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL 44 (300)
Q Consensus 2 ~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~ 44 (300)
+++.||.|. =|+++++.|.+.|++|.+++-+.+-..
T Consensus 4 vlITGassG-------IG~a~A~~la~~G~~v~l~~R~~~~l~ 39 (243)
T PRK07102 4 ILIIGATSD-------IARACARRYAAAGARLYLAARDTERLE 39 (243)
T ss_pred EEEECCCHH-------HHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 999157459-------999999999987998999989889999
No 185
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=66.44 E-value=10 Score=18.24 Aligned_cols=60 Identities=13% Similarity=0.051 Sum_probs=34.8
Q ss_pred CCCCCCH-HHHHHHHHHHHCCCC--CHHHHHHCCC---C-----HHCCCCCCCCEEECCCEEEECCCCCHH
Q ss_conf 8434310-235666432100231--0023320365---0-----010000212100001213202220001
Q gi|254781179|r 61 NFGEDGL-VQAILELLEIPYTHS--GILASALSMD---K-----MRSKQVVSSCGVPVCPSILVNRFTMDS 120 (300)
Q Consensus 61 ~~gEdg~-iq~~le~~~ipy~Gs--~~~~~~l~~d---K-----~~~k~~l~~~gIptp~~~~~~~~~~~~ 120 (300)
.+|+-|. +..+|+..|+||+-= |+........ | ..-..+|+.+|+..++..++.-++...
T Consensus 406 G~GRvGq~var~L~~~gi~~vviD~d~~~V~~~r~~G~~v~yGDat~~~vL~~AGi~~Ar~vViaidd~~~ 476 (615)
T PRK03562 406 GFGRFGQIVGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQT 476 (615)
T ss_pred ECCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCEEEEEECCHHH
T ss_conf 02804699999999789987999799999999996799089768999999986791406889999498999
No 186
>TIGR00715 precor6x_red precorrin-6x reductase; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y , .; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process.
Probab=66.24 E-value=10 Score=18.22 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=18.7
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHCC-CEEEEE
Q ss_conf 89836787127889999999999999879-889996
Q gi|254781179|r 2 AVLMGGISSEREVSLSSGKACASALEDAG-FKVSQI 36 (300)
Q Consensus 2 ~vl~GG~s~E~~iSl~S~~~i~~aL~~~g-~~v~~i 36 (300)
.+|.||- .-+++|++.|...| .++..-
T Consensus 3 vll~GGT--------~dsr~~~~~L~~~~~~~i~~t 30 (260)
T TIGR00715 3 VLLMGGT--------KDSRAIAKKLRALGDVEILVT 30 (260)
T ss_pred EEEEECC--------HHHHHHHHHHCCCCCEEEEEE
T ss_conf 8997177--------789999974037875899987
No 187
>PRK06841 short chain dehydrogenase; Provisional
Probab=66.24 E-value=10 Score=18.22 Aligned_cols=42 Identities=36% Similarity=0.483 Sum_probs=32.6
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHC
Q ss_conf 2898367871278899999999999998798899961586568888753
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL 49 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~ 49 (300)
++|+.||.| -=|+++++.|-+.|.+|.+.|.+++........
T Consensus 17 valVTGas~-------GIG~aiA~~la~~Ga~V~i~d~~~~~~~~~~~~ 58 (255)
T PRK06841 17 VAVVTGGAS-------GIGHAIAELFAAKGARVALLDRSEDVAEVAAQL 58 (255)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
T ss_conf 999979677-------899999999998799999996987899999984
No 188
>PRK09291 short chain dehydrogenase; Provisional
Probab=65.67 E-value=11 Score=18.15 Aligned_cols=33 Identities=21% Similarity=0.150 Sum_probs=25.8
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
++++.|+.| -=|++++..|.+.|++|+...-+.
T Consensus 4 ~vLITGAss-------GIGraiA~~la~~G~~Vi~~~r~~ 36 (257)
T PRK09291 4 TILITGAGS-------GFGREVALRLARKGHRVIAGVQIA 36 (257)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 899968985-------899999999998799899996878
No 189
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=65.04 E-value=11 Score=18.07 Aligned_cols=29 Identities=34% Similarity=0.407 Sum_probs=24.2
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 28983678712788999999999999987988999615
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV 38 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~ 38 (300)
|||+-+|++ |.+++..|.+.||+|..++.
T Consensus 309 VAVIGsGPA---------GLs~A~~Lar~Gy~VTVFEa 337 (944)
T PRK12779 309 IAVVGSGPS---------GLINAYLLAVEGFPVTIFEA 337 (944)
T ss_pred EEEECCCHH---------HHHHHHHHHHCCCCEEEEEC
T ss_conf 799885768---------99999999977993399944
No 190
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=64.84 E-value=11 Score=18.05 Aligned_cols=46 Identities=24% Similarity=0.214 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECC
Q ss_conf 278899999999999998798899961586568888753998999925
Q gi|254781179|r 11 EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVL 58 (300)
Q Consensus 11 E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~l 58 (300)
|-+..+ +..+...|+..||+|......+.....+....||+|+--+
T Consensus 9 EDd~~l--~~~l~~~L~~~g~~v~~a~~g~~a~~~l~~~~~DliilDi 54 (229)
T PRK10161 9 EDEAPI--REMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDW 54 (229)
T ss_pred ECCHHH--HHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEEC
T ss_conf 599999--9999999997799999989999999998528998999978
No 191
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase; InterPro: IPR011283 This entry represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of 1.1.1.36 from EC is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. ; GO: 0018454 acetoacetyl-CoA reductase activity, 0042619 poly-hydroxybutyrate biosynthetic process, 0005737 cytoplasm.
Probab=64.70 E-value=9.1 Score=18.60 Aligned_cols=164 Identities=16% Similarity=0.206 Sum_probs=74.4
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC--CCHHHHHHHC--CCCEEEECCCCCCC--CCC--HHHHHH
Q ss_conf 289836787127889999999999999879889996158--6568888753--99899992548843--431--023566
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--RSVGLVLAHL--KPDLAFNVLHGNFG--EDG--LVQAIL 72 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~--~~~~~~l~~~--~~D~vf~~lhG~~g--Edg--~iq~~l 72 (300)
||++.||. +.| |.+||+.|.+.||+|..=+.. .+-...+.+. -.+.=|-++.|--+ |+- .|+.+.
T Consensus 2 vALVTGg~---GGI----GtAIC~rL~~dG~~V~An~~p~N~~~a~~W~~~~~~~g~~~~~~~~DV~~~e~c~~~v~~v~ 74 (244)
T TIGR01829 2 VALVTGGT---GGI----GTAICTRLAKDGYRVAANYVPSNEERAEAWLQEQGAQGFDFAVVEGDVSSFEDCKAAVAKVE 74 (244)
T ss_pred EEEEECCC---CCH----HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 47885787---744----68999999875988988178982589999998626985147898727677789999999999
Q ss_pred HHHH-HHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCHHHHHCCCCEEEEECCCCCCC--CEEEEC----
Q ss_conf 6432-100231002332036500100002121000012132022200012210586256432477642--114325----
Q gi|254781179|r 73 ELLE-IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL--GIIVIK---- 145 (300)
Q Consensus 73 e~~~-ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~~~~~~~~P~ivKP~~ggsS~--Gv~~v~---- 145 (300)
+.+| |--. +--.=++.||..-|.--.++. -+=+-.+...-...-|++=|=+.-|.++ .||-|+
T Consensus 75 a~lGpvDvL---VNNAGITRD~~F~KM~~~qW~-------~VI~TNL~SvFNVT~pV~~gM~eRGwGRIiNISSvNG~KG 144 (244)
T TIGR01829 75 AELGPVDVL---VNNAGITRDKTFKKMTYEQWS-------EVIDTNLNSVFNVTRPVIEGMRERGWGRIINISSVNGQKG 144 (244)
T ss_pred HCCCCEEEE---EECCCCCCCHHHCCCCHHHHH-------HHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_conf 711953689---868864403031249984688-------8986313244155400147662168841688412147756
Q ss_pred --CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf --9899999886300366885422333578845788731444
Q gi|254781179|r 146 --KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 (300)
Q Consensus 146 --~~~el~~~~~~~~~~~~~~~vlVEefI~G~E~~v~Vl~~~ 185 (300)
-+.....+.+-..-| ...|.+|--. +-+||.++.++
T Consensus 145 QfGQtNYSAAKAG~iGF---TkALA~E~A~-kGvTVN~i~PG 182 (244)
T TIGR01829 145 QFGQTNYSAAKAGMIGF---TKALAQEGAR-KGVTVNVIAPG 182 (244)
T ss_pred CCCHHHHHHHHHHHHHH---HHHHHHHCCC-CCCEEEEECCC
T ss_conf 54304589886215677---7999972110-38567545588
No 192
>pfam03486 HI0933_like HI0933-like protein.
Probab=63.68 E-value=1.6 Score=23.49 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=25.7
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 289836787127889999999999999879889996158656
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV 42 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~ 42 (300)
|+||-||+ ||-..+..+.+.|++|.+++-+..+
T Consensus 3 v~VIGgGa---------aGl~aAi~aa~~g~~V~ilEk~~~~ 35 (405)
T pfam03486 3 VIVIGGGA---------AGLMAAISAAKRGRRVLLIEKGKKL 35 (405)
T ss_pred EEEECCCH---------HHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 99999669---------9999999998689959999589987
No 193
>CHL00148 orf27 Ycf27; Reviewed
Probab=63.59 E-value=12 Score=17.90 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=33.6
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECC
Q ss_conf 9999999998798899961586568888753998999925
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVL 58 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~l 58 (300)
+..+...|++.||+|............+...+||+|+-=+
T Consensus 19 ~~~l~~~L~~~G~~v~~a~~g~~a~~~~~~~~~DlviLDi 58 (240)
T CHL00148 19 RRILETRLSIIGYEVITASDGEEALKLFHQEQPDLVILDV 58 (240)
T ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEC
T ss_conf 9999999997899999989999999999747999999979
No 194
>pfam06973 DUF1297 Domain of unknown function (DUF1297). This family represents the C-terminus (approximately 200 residues) of a number of archaeal proteins of unknown function. One member is annotated as being a possible carboligase enzyme.
Probab=63.22 E-value=12 Score=17.86 Aligned_cols=131 Identities=14% Similarity=0.102 Sum_probs=68.6
Q ss_pred CCCCCCCCCCCCEEEEEECCCC---CCCEEEE----CCCCCCCCCCCCCCCC---CC----CCCCCCCCCHHHHHHHHHH
Q ss_conf 5422333578845788731444---4200220----2554333311000011---22----2245865211666554444
Q gi|254781179|r 164 DQLLIEQYVDGIELTCGVMGDA---SLDVTEI----AVPKSDFYSYELKYSS---LN----STHVLPAKIPLDIYKEVQR 229 (300)
Q Consensus 164 ~~vlVEefI~G~E~~v~Vl~~~---~~~~~ei----~~~~~~~~dy~~Ky~~---~~----~~~~~Pa~l~~~~~~~i~~ 229 (300)
..+.||||+-|.-+.....-.. .+....+ ...-++++-.-+|-+- -. ..-..|+.+-+.+..++-+
T Consensus 21 ~~a~IeEyv~G~~~~~~yFySpl~~~lEllg~D~R~esniDg~~Rlpa~~Ql~~~~~p~~vvvGn~p~vlRESLL~~vfe 100 (188)
T pfam06973 21 EKARIEEYVIGAPFNFHYFYSPLKDRVELLGIDRRYESNLDGLVRLPAKQQLELNIEPTYVVVGNIPAVLRESLLEKVFE 100 (188)
T ss_pred HHCEEEEEECCCEEEEEEECCCCCCCEEEEECCCEEECCCHHHHCCCCHHHHHCCCCCCEEEECCCCCEEEHHHHHHHHH
T ss_conf 01267666337546654410300063236631110232603442288277861689860799888431440765799999
Q ss_pred HHHHHHHHC------CCCCEEEEEEEEECCCCEEEEEEECC------CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 444577534------87645799999976898399997472------65888223899999983999899999999975
Q gi|254781179|r 230 LAFLAHQAI------GCRGISRSDFLFDPLSRKVFWLEINV------QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 (300)
Q Consensus 230 ~a~~~~~al------g~~g~~rvDf~~d~~~g~~~~lEvN~------~PGlt~~s~~p~~~~~~G~s~~~li~~ii~~A 296 (300)
++.+..++. |+-|....+..+++ +.++++.||-+ ++.|. .|.|....-...+|.-.=+..=|..|
T Consensus 101 ~ge~fV~ask~l~~PG~iGPFcLq~ivt~-dle~vvFevS~RI~ggtN~~~~-gsPYs~l~~~epms~GrRIA~EIk~A 177 (188)
T pfam06973 101 MGEKFVEASKELVPPGIIGPFCLQSIVTD-DLEFVVFEVSARIVGGTNVYMN-GSPYSKLYFGEPMSMGRRIAREIKLA 177 (188)
T ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEEECC-CCEEEEEEEECCCCCCCCCCCC-CCCCHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 99999999998569986134446678879-8619999985300488877458-99972656189762678999999999
No 195
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=63.13 E-value=12 Score=17.85 Aligned_cols=31 Identities=39% Similarity=0.551 Sum_probs=27.5
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
||||-+|+. |.++++.|.+.|-+|...|=+.
T Consensus 146 VAviGAGPA---------GLaCAD~L~RaGV~v~VfDRhP 176 (480)
T TIGR01318 146 VAVIGAGPA---------GLACADILARAGVQVVVFDRHP 176 (480)
T ss_pred EEEECCCCC---------HHHHHHHHHHCCCEEEEEECCC
T ss_conf 899778860---------2579998751785599974770
No 196
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=63.03 E-value=6.6 Score=19.49 Aligned_cols=31 Identities=42% Similarity=0.577 Sum_probs=16.3
Q ss_pred HCCCCEEEECC-CC-CCCCC----CHHHHHHH--HHHHH
Q ss_conf 53998999925-48-84343----10235666--43210
Q gi|254781179|r 48 HLKPDLAFNVL-HG-NFGED----GLVQAILE--LLEIP 78 (300)
Q Consensus 48 ~~~~D~vf~~l-hG-~~gEd----g~iq~~le--~~~ip 78 (300)
..+||+|+.=+ || +-|+| |+|.+.+| ++|||
T Consensus 90 ~~kPDLVvSGIN~G~NlG~dv~YSGTVgAA~Eg~~~Gip 128 (258)
T PRK13932 90 PEKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIP 128 (258)
T ss_pred CCCCCEEEECCCCCCCCCCCEECCHHHHHHHHHHHCCCC
T ss_conf 899998996876886567131040789999999975998
No 197
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; InterPro: IPR011772 This entry respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions . This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This entry identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologues of this gene are not found in plants which rely solely on the aerobic cyclase.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050661 NADP binding, 0015995 chlorophyll biosynthetic process.
Probab=62.98 E-value=12 Score=17.83 Aligned_cols=37 Identities=32% Similarity=0.382 Sum_probs=30.6
Q ss_pred HHHHHHHHHCC-CEEEEECC------CCCHHHHHHHCCCCEEEE
Q ss_conf 99999999879-88999615------865688887539989999
Q gi|254781179|r 20 KACASALEDAG-FKVSQIDV------DRSVGLVLAHLKPDLAFN 56 (300)
Q Consensus 20 ~~i~~aL~~~g-~~v~~id~------~~~~~~~l~~~~~D~vf~ 56 (300)
..|+=+|++.| +++.++|. |+.+..++.+.+||+|..
T Consensus 27 ~yigGaL~~AG~~d~~f~DA~~~~l~de~l~e~lr~~~Pd~v~~ 70 (506)
T TIGR02026 27 AYIGGALKDAGYDDVTFLDAMTDPLTDEKLVERLRAHRPDLVLI 70 (506)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 87202667468766377622368887489999997259868997
No 198
>KOG2983 consensus
Probab=62.96 E-value=12 Score=17.83 Aligned_cols=87 Identities=16% Similarity=0.183 Sum_probs=46.8
Q ss_pred CCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HCCCCCEEEEEEE
Q ss_conf 578845788731444420022025543333110000112222458652116665544444445775-3487645799999
Q gi|254781179|r 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ-AIGCRGISRSDFL 249 (300)
Q Consensus 171 fI~G~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~-alg~~g~~rvDf~ 249 (300)
..++.||.|.|-.+.-+.+..... ..+|||-. ...+.+..-|.+...+... .+--.++. .|.-
T Consensus 173 l~p~~EFRcFVKsn~lvg~~QRd~--tnyYd~l~-------------e~kd~~k~lI~eff~d~i~~kF~dedfv-fDVY 236 (334)
T KOG2983 173 LKPEMEFRCFVKSNELVGICQRDV--TNYYDVLL-------------EEKDLLKGLIEEFFKDKILFKFPDEDFV-FDVY 236 (334)
T ss_pred CCCCCEEEEEEECCCEEEEEECCC--HHHHHHHH-------------HHHHHHHHHHHHHHHHHHHCCCCCCCEE-EEEE
T ss_conf 886736899973260666641120--24889998-------------8789999999999875211247897726-8999
Q ss_pred EECCCCEEEEEEECCCCCCCHHHHH
Q ss_conf 9768983999974726588822389
Q gi|254781179|r 250 FDPLSRKVFWLEINVQPGMTPVSIF 274 (300)
Q Consensus 250 ~d~~~g~~~~lEvN~~PGlt~~s~~ 274 (300)
++. .+++|++++||..|-|-.=+|
T Consensus 237 i~k-~~kv~lID~Npf~~~TdsLlf 260 (334)
T KOG2983 237 ITK-ERKVWLIDFNPFCGSTDSLLF 260 (334)
T ss_pred ECC-CCCEEEEECCCCCCCCCCCEE
T ss_conf 637-882799964676676622203
No 199
>pfam03033 Glyco_transf_28 Glycosyltransferase family 28 N-terminal domain. The glycosyltransferase family 28 includes monogalactosyldiacylglycerol synthase (EC 2.4.1.46) and UDP-N-acetylglucosamine transferase (EC 2.4.1.-). This N-terminal domain contains the acceptor binding site and likely membrane association site. This family also contains a large number of proteins that probably have quite distinct activities.
Probab=62.94 E-value=12 Score=17.82 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=34.6
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEE
Q ss_conf 98367871278899999999999998798899961586568888753998999
Q gi|254781179|r 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAF 55 (300)
Q Consensus 3 vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf 55 (300)
+|+||.+.=| +.-+.+++++|++.||+|. +..++.....+.+...+.+.
T Consensus 2 lia~GGTGGH---v~Palala~~L~~~g~~v~-igt~~~~e~~v~~~~~~~~~ 50 (136)
T pfam03033 2 LLAGGGTRGH---VFPAVALAWALRRRGHEVR-LGTPPGLEEFVEEAGLPFVP 50 (136)
T ss_pred EEEECCCHHH---HHHHHHHHHHHHHCCCEEE-ECCCCCHHHHHHHCCCEEEE
T ss_conf 8994415799---9999999999998599771-21580288887535981899
No 200
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=62.72 E-value=12 Score=17.80 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=32.9
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECC
Q ss_conf 9999999998798899961586568888753998999925
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVL 58 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~l 58 (300)
+..+...|++.||+|............+...+||+|+-=+
T Consensus 14 ~~~l~~~L~~~g~~v~~a~~g~~a~~~~~~~~~DlvilDi 53 (240)
T PRK10701 14 GSLIAAYLAKHDIDVTVEPRGDRAEETILREQPDLVLLDI 53 (240)
T ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEC
T ss_conf 9999999988799999989999999998617999999928
No 201
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=62.71 E-value=12 Score=17.80 Aligned_cols=45 Identities=20% Similarity=0.210 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEEC
Q ss_conf 27889999999999999879889996158656888875399899992
Q gi|254781179|r 11 EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV 57 (300)
Q Consensus 11 E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~ 57 (300)
|-|..+ +..+...|++.||+|............+...+||+|+-=
T Consensus 7 EDd~~l--~~~l~~~L~~~g~~V~~a~~g~~a~~~~~~~~~DlvilD 51 (219)
T PRK10336 7 EDDMLI--GDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILD 51 (219)
T ss_pred ECCHHH--HHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEE
T ss_conf 389999--999999999879999998999999999862896999997
No 202
>pfam02233 PNTB NAD(P) transhydrogenase beta subunit. This family corresponds to the beta subunit of NADP transhydrogenase in prokaryotes, and either the protein N- or C terminal in eukaryotes. The domain is often found in conjunction with pfam01262. Pyridine nucleotide transhydrogenase catalyses the reduction of NAD+ to NADPH. A complete loss of activity occurs upon mutation of Gly314 in E. coli.
Probab=62.69 E-value=8.2 Score=18.87 Aligned_cols=19 Identities=11% Similarity=0.225 Sum_probs=11.8
Q ss_pred HHHCCCCHHCCCCCCCCEE
Q ss_conf 3203650010000212100
Q gi|254781179|r 87 SALSMDKMRSKQVVSSCGV 105 (300)
Q Consensus 87 ~~l~~dK~~~k~~l~~~gI 105 (300)
.+.+||+.++.-++...|-
T Consensus 259 MCkAMNRsl~nVlfGgfg~ 277 (464)
T pfam02233 259 MCKAMNRSLINVILGGFGT 277 (464)
T ss_pred HHHHHCCCHHHEEECCCCC
T ss_conf 9998487487712345568
No 203
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=62.13 E-value=12 Score=17.73 Aligned_cols=35 Identities=29% Similarity=0.313 Sum_probs=28.3
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 289836787127889999999999999879889996158656
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV 42 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~ 42 (300)
++|+.||.+ -=|+++++.|-+.|.+|.+.+.+++.
T Consensus 14 valVTG~s~-------GIG~aia~~la~~Ga~V~i~~~~~~~ 48 (259)
T PRK08213 14 TALVTGGSR-------GLGLQIAEALGEAGARVVLSARKAEE 48 (259)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 899948776-------89999999999869999999798899
No 204
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=62.00 E-value=12 Score=17.72 Aligned_cols=61 Identities=20% Similarity=0.191 Sum_probs=39.4
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCCCCCC---CCCHHHHHHHH--HHHHCCC
Q ss_conf 999999999879889996158656888875399899992548843---43102356664--3210023
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILEL--LEIPYTH 81 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~lhG~~g---Edg~iq~~le~--~~ipy~G 81 (300)
...++..|+++|..+..+..++.....+...+||.++.- |.+| +++....+.+. .++|..|
T Consensus 11 t~~i~r~lr~~g~~~~v~p~~~~~~~~~~~~~~~giiLS--~GPg~p~~~~~~~~~~~~l~~~iPiLG 76 (184)
T cd01743 11 TYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVIS--PGPGHPEDAGISLEIIRALAGKVPILG 76 (184)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEEC--CCCCCHHHCCCHHHHHHHHHCCCCEEE
T ss_conf 999999998679959999899999999973297999999--999892561460999999846998999
No 205
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=61.83 E-value=13 Score=17.70 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=25.1
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 289836787127889999999999999879889996158
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD 39 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~ 39 (300)
|||+-+|+. |.+++.-|.+.||+|.+.+..
T Consensus 553 VAVIGsGPA---------GLaAA~~Lar~Gh~VTVFEk~ 582 (1032)
T PRK09853 553 VAVIGAGPA---------GLAAGYFLARAGHPVTVFERE 582 (1032)
T ss_pred EEEECCCHH---------HHHHHHHHHHCCCCEEEEECC
T ss_conf 999896889---------999999999779936998158
No 206
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=61.05 E-value=13 Score=17.61 Aligned_cols=40 Identities=23% Similarity=0.154 Sum_probs=33.0
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECC
Q ss_conf 9999999998798899961586568888753998999925
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVL 58 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~l 58 (300)
+..+...|++.||+|....-..+....+....||+|+-=+
T Consensus 13 ~~~l~~~L~~~G~~v~~a~~g~~a~~~~~~~~~DlvilDi 52 (226)
T PRK09836 13 GEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDI 52 (226)
T ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECC
T ss_conf 9999999987899999989999999998518999999889
No 207
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=59.74 E-value=14 Score=17.47 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=32.7
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECC
Q ss_conf 9999999998798899961586568888753998999925
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVL 58 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~l 58 (300)
+..+...|++.||+|....-.++....+....||+|+.=+
T Consensus 13 ~~~l~~~L~~~g~~V~~a~~g~~al~~~~~~~~DlvilDi 52 (223)
T PRK11517 13 QEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDI 52 (223)
T ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECC
T ss_conf 9999999998899999989999999998528999999849
No 208
>PRK08177 short chain dehydrogenase; Provisional
Probab=59.69 E-value=14 Score=17.46 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=26.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
++++.||.| . =|+++++.|.+.|++|+..+-+.
T Consensus 3 ~~lITGas~---G----IG~aia~~l~~~G~~V~~~~R~~ 35 (225)
T PRK08177 3 TALIIGASR---G----LGLGLVDRLLERGWQVTATVRGP 35 (225)
T ss_pred EEEECCCCH---H----HHHHHHHHHHHCCCEEEEEECCH
T ss_conf 899927342---9----99999999998869999997988
No 209
>pfam01946 Thi4 Thi4 family. This family includes a putative thiamine biosynthetic enzyme.
Probab=59.45 E-value=13 Score=17.60 Aligned_cols=30 Identities=30% Similarity=0.417 Sum_probs=21.9
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 289836787127889999999999999879889996158
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD 39 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~ 39 (300)
|+|+-+|+ ||...+..|.+.|++|.+++..
T Consensus 20 V~IVGaGp---------sGL~aA~~LAk~g~KV~i~E~~ 49 (229)
T pfam01946 20 VVIVGAGP---------SGLTAAYYLAKKGLKVAIIERS 49 (229)
T ss_pred EEEECCCC---------HHHHHHHHHHHCCCEEEEEECC
T ss_conf 89988781---------7999999998789859999645
No 210
>TIGR00090 TIGR00090 iojap homolog; InterPro: IPR004394 The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. Maize has two RNA polymerases in plastids, but the plastid-encoded one, similar to bacterial RNA polymerases, is missing in iojap mutants. The role of iojap in chloroplast development, and the role of its bacterial orthologs modeled here, is unclear..
Probab=59.39 E-value=10 Score=18.27 Aligned_cols=55 Identities=20% Similarity=0.357 Sum_probs=35.3
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHC-CCEEEEECCCCCHHHHHHHCCCCEEEECCC
Q ss_conf 8983678712788999999999999987-988999615865688887539989999254
Q gi|254781179|r 2 AVLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRSVGLVLAHLKPDLAFNVLH 59 (300)
Q Consensus 2 ~vl~GG~s~E~~iSl~S~~~i~~aL~~~-g~~v~~id~~~~~~~~l~~~~~D~vf~~lh 59 (300)
.|||-|.|.-|--|+ +++|.+.+++. |..+.-++...+-.|++.-+ -|++.-++|
T Consensus 62 ~iICTG~S~~qV~ai--aD~~~~~~~~~hG~~~~~~EG~~~a~Wi~vDL-GDv~VH~f~ 117 (155)
T TIGR00090 62 FIICTGTSSKQVLAI--ADNIKKQLKEAHGLLPLGIEGESEADWILVDL-GDVIVHVFQ 117 (155)
T ss_pred CEEEECCHHHHHHHH--HHHHHHHHHHHCCEEEECCCCCCCCCEEEEEC-CCEEEECCC
T ss_conf 033306727899999--99999999986682222136886543336622-320242247
No 211
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=59.29 E-value=14 Score=17.42 Aligned_cols=45 Identities=16% Similarity=0.355 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 5862564324776421143259899999886300366885422333578
Q gi|254781179|r 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 (300)
Q Consensus 125 ~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~~~~~~~~vlVEefI~ 173 (300)
+.++|-||..|.-+-+|+++++..++.. ....-.+.+.+.|+|.+
T Consensus 305 ~~~yV~KPlfgREGaNV~i~~~g~~~~~----~~G~Y~~~~~IyQ~~~~ 349 (395)
T PHA02117 305 NPKWVSKPLLSREGSNVHIFEYGGESEF----TDGNYAEEPRIVQQYIE 349 (395)
T ss_pred CCCEEECCCCCCCCCCEEEEECCCEEEC----CCCCCCCCCEEEEECCC
T ss_conf 6872621243556788699948957841----58987888859994379
No 212
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain; InterPro: IPR010143 This entry represents all three varieties (Fe-Fe, Mo-Fe and V-Fe) of the component I alpha chain of nitrogenase. Nitrogenase (1.18.6.1 from EC) is the enzyme system responsible for biological nitrogen fixation. Nitrogenase is an oligomeric complex which consists of two components: component 2 is an homodimer of an iron-sulphur protein, while component 1 which contains the active site for the reduction of nitrogen to ammonia exists in three different forms: the molybdenum-iron containing protein (MoFe) is a hetero-tetramer consisting of two pairs of alpha (nifD) and beta (nifK) subunits; the vanadium-iron containing protein (VFe) is a hexamer of two pairs each of alpha (vnfD), beta (vnfK), and delta (vnfG) subunits; the third form seems to only contain iron and is a hexamer composed of alpha (anfD), beta (anfK), and delta (anfG) subunits. The alpha and beta chains of the three types of component 1 are evolutionary related and they are also related to proteins nifE and nifN, which are most probably involved in the iron-molybdenum cofactor biosynthesis .; GO: 0016163 nitrogenase activity, 0051536 iron-sulfur cluster binding, 0009399 nitrogen fixation.
Probab=58.38 E-value=2 Score=22.75 Aligned_cols=38 Identities=13% Similarity=0.063 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECC
Q ss_conf 1166655444444457753487645799999976898399997472
Q gi|254781179|r 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 (300)
Q Consensus 219 l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~ 264 (300)
+|++..++++++..- | ..|+.+==++ .+|.+++=++|-
T Consensus 405 iPedkveelkkaGvP----l--ssyGG~~kr~--~eGT~~iDD~N~ 442 (510)
T TIGR01862 405 IPEDKVEELKKAGVP----L--SSYGGVMKRM--GEGTLLIDDPNE 442 (510)
T ss_pred CCCCHHHHHHHCCCC----C--CCCCCEEEEE--CCCCEEEECCCC
T ss_conf 274136788754873----0--0347637872--354078967888
No 213
>PRK06125 short chain dehydrogenase; Provisional
Probab=57.75 E-value=15 Score=17.25 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=29.3
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf 28983678712788999999999999987988999615865688
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL 44 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~ 44 (300)
++|+.||.+ . =|+++++.|.+.|.+|.+++.+++-..
T Consensus 9 ~alITG~s~---G----IG~aiA~~la~~Ga~V~i~~r~~~~l~ 45 (259)
T PRK06125 9 RVLITGASK---G----IGAAAAEAFAAEGCHLVLAARDADALA 45 (259)
T ss_pred EEEEECCCC---H----HHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 899968776---8----999999999987998999979889999
No 214
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=57.70 E-value=15 Score=17.25 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=32.8
Q ss_pred CCCCCCH-HHHHHHHHHHHCCCCC--HHHHHHCCCC--------HHCCCCCCCCEEECCCEEEECCCCCH
Q ss_conf 8434310-2356664321002310--0233203650--------01000021210000121320222000
Q gi|254781179|r 61 NFGEDGL-VQAILELLEIPYTHSG--ILASALSMDK--------MRSKQVVSSCGVPVCPSILVNRFTMD 119 (300)
Q Consensus 61 ~~gEdg~-iq~~le~~~ipy~Gs~--~~~~~l~~dK--------~~~k~~l~~~gIptp~~~~~~~~~~~ 119 (300)
.+|+-|. +..+|+..|+||+.=+ +........+ ..-..+|+++|+..++..++.-++..
T Consensus 407 G~GR~Gq~var~L~~~gi~~vviD~d~~~V~~~r~~G~~v~yGDat~~~vL~~AGi~~A~~vViai~d~~ 476 (602)
T PRK03659 407 GFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPE 476 (602)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCEEEEEECCHH
T ss_conf 8875689999999978999899978679999999789908975899999998679040588999829899
No 215
>pfam04556 DpnII DpnII restriction endonuclease. Members of this family are type II restriction enzymes (EC:3.1.21.4). They recognize the double-stranded unmethylated sequence GATC and cleave before G-1. http://rebase.neb.com/rebase/enz/DpnII.html
Probab=57.49 E-value=12 Score=17.74 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=17.8
Q ss_pred CEEEEEEEEECCCCEEEEEEECCCC
Q ss_conf 4579999997689839999747265
Q gi|254781179|r 242 GISRSDFLFDPLSRKVFWLEINVQP 266 (300)
Q Consensus 242 g~~rvDf~~d~~~g~~~~lEvN~~P 266 (300)
.-=|.||.+. .++.+|++|+|=--
T Consensus 192 ~~krFDFvi~-~~~k~y~IE~NfY~ 215 (284)
T pfam04556 192 SEKRFDFVIK-TKKKLYLIETNFYN 215 (284)
T ss_pred CCCEEEEEEE-CCCEEEEEEEEECC
T ss_conf 5445679996-19879999964026
No 216
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=57.22 E-value=15 Score=17.20 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECC
Q ss_conf 99999999998798899961586568888753998999925
Q gi|254781179|r 18 SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVL 58 (300)
Q Consensus 18 S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~l 58 (300)
.+..+...|++.||+|....-.+.....+....||+|+-=+
T Consensus 22 l~~~l~~~L~~~g~~V~~a~~~~eal~~~~~~~~DliilDi 62 (240)
T PRK10710 22 LGQLLIDYLRAASYAPTLISHGDEVLPYVRQTPPDLILLDL 62 (240)
T ss_pred HHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECC
T ss_conf 99999999998899999989999999999737998999879
No 217
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=56.94 E-value=15 Score=17.17 Aligned_cols=39 Identities=23% Similarity=0.219 Sum_probs=33.1
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEEC
Q ss_conf 999999999879889996158656888875399899992
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV 57 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~ 57 (300)
+..+...|+..||+|......++....+....||+|+-=
T Consensus 16 ~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvilD 54 (229)
T PRK11083 16 ADTLVYALQSEGFTVEWFERGLPALDKLRQQPPDLVILD 54 (229)
T ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEC
T ss_conf 999999999889999998999999999971899899973
No 218
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=56.91 E-value=15 Score=17.16 Aligned_cols=28 Identities=39% Similarity=0.646 Sum_probs=24.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 2898367871278899999999999998798899961
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID 37 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id 37 (300)
|||+--||. |.+++..|.+.||+|...+
T Consensus 145 VAViGaGPA---------GL~cA~elAk~Gh~VtvfE 172 (462)
T TIGR01316 145 VAVIGAGPA---------GLACASELAKKGHEVTVFE 172 (462)
T ss_pred EEEECCCCH---------HHHHHHHHHHCCCEEEEEE
T ss_conf 999846821---------4688999974798699997
No 219
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=56.84 E-value=15 Score=17.16 Aligned_cols=29 Identities=34% Similarity=0.461 Sum_probs=23.4
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 28983678712788999999999999987988999615
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV 38 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~ 38 (300)
|||+-=|+- |.|.++-|.+.||.|...+-
T Consensus 154 VAVVGSGPA---------GLAaA~qLnrAGH~VTVfER 182 (517)
T TIGR01317 154 VAVVGSGPA---------GLAAADQLNRAGHTVTVFER 182 (517)
T ss_pred EEEECCCHH---------HHHHHHHHHHCCCCEEEEEC
T ss_conf 899756757---------99999998535883899743
No 220
>PRK05670 anthranilate synthase component II; Provisional
Probab=56.72 E-value=15 Score=17.14 Aligned_cols=61 Identities=18% Similarity=0.180 Sum_probs=37.9
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCCCCCC---CCCHHHHHHHHH--HHHCCC
Q ss_conf 999999999879889996158656888875399899992548843---431023566643--210023
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELL--EIPYTH 81 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~lhG~~g---Edg~iq~~le~~--~ipy~G 81 (300)
...++..|+++|.++.++-.++.....+...+||.++.- |.+| +.+....+++.+ ++|..|
T Consensus 12 T~nI~~~lr~~g~~v~V~~~d~~~~~~i~~~~pdgiiLS--~GPg~P~~~~~~~~~i~~~~~~iPiLG 77 (192)
T PRK05670 12 TYNLVQYLGELGAEVVVYRNDEITLEEIEALAPDAIVLS--PGPGTPAEAGISLELIREFAGKVPILG 77 (192)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEEC--CCCCCHHHCCCHHHHHHHHCCCCCEEE
T ss_conf 999999998689969999899899999985098989999--999993660554999997346997899
No 221
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=56.32 E-value=16 Score=17.10 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=33.4
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECC
Q ss_conf 9999999998798899961586568888753998999925
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVL 58 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~l 58 (300)
+..+...|++.||+|......+.....+....||+|+-=+
T Consensus 18 ~~~l~~~L~~~g~~v~~a~~~~~a~~~~~~~~~DlvilDi 57 (239)
T PRK09468 18 RALLERYLTEQGFQVRSAANAEQMDRLLTRESFHLMVLDL 57 (239)
T ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECC
T ss_conf 9999999998899999989999999999758998999878
No 222
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=56.31 E-value=16 Score=17.10 Aligned_cols=31 Identities=35% Similarity=0.560 Sum_probs=26.1
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
|+||-|| ..|.+++-.|.+.|++|.++|.++
T Consensus 4 V~VIGaG---------ivGlstA~~La~~G~~VtviDr~~ 34 (410)
T PRK12409 4 IAVIGAG---------ITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred EEEECCH---------HHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9998983---------999999999997899189996989
No 223
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=56.30 E-value=16 Score=17.10 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=44.8
Q ss_pred CEEEECCCC---HHHHHH-HHHHHHHHHHHHHCCCEEEEECCCC-C------HHHHHHHCCCCEEEECCCCCCCCCCHHH
Q ss_conf 289836787---127889-9999999999998798899961586-5------6888875399899992548843431023
Q gi|254781179|r 1 MAVLMGGIS---SEREVS-LSSGKACASALEDAGFKVSQIDVDR-S------VGLVLAHLKPDLAFNVLHGNFGEDGLVQ 69 (300)
Q Consensus 1 i~vl~GG~s---~E~~iS-l~S~~~i~~aL~~~g~~v~~id~~~-~------~~~~l~~~~~D~vf~~lhG~~gEdg~iq 69 (300)
|++++|++. .|-.-. ...++.+.+.|++++++++..+.-. + ....++..+.|.++..+| .|+....+-
T Consensus 3 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~vdgli~~~~-tf~~~~~~~ 81 (452)
T cd00578 3 IGFVTGSQHLYGEELLEQVEEYAREVADLLNELPVEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMH-TFGPAKMWI 81 (452)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCC-CCCCHHHHH
T ss_conf 7999600445685799999999999999970699739988840489999999999987759979999058-668779999
Q ss_pred HHHHHHHHHCC
Q ss_conf 56664321002
Q gi|254781179|r 70 AILELLEIPYT 80 (300)
Q Consensus 70 ~~le~~~ipy~ 80 (300)
.++..++.|..
T Consensus 82 ~~~~~~~~Pvl 92 (452)
T cd00578 82 AGLSELRKPVL 92 (452)
T ss_pred HHHHHCCCCEE
T ss_conf 99985799899
No 224
>PRK00347 sugar fermentation stimulation protein A; Reviewed
Probab=56.27 E-value=6.9 Score=19.35 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=7.6
Q ss_pred EEEEEEEECCCCEEEEEEEC
Q ss_conf 79999997689839999747
Q gi|254781179|r 244 SRSDFLFDPLSRKVFWLEIN 263 (300)
Q Consensus 244 ~rvDf~~d~~~g~~~~lEvN 263 (300)
+|+||.+...++.-.++||-
T Consensus 117 SR~DFll~~~~~~~~~vEVK 136 (234)
T PRK00347 117 SRIDFLLEADDRPDCYVEVK 136 (234)
T ss_pred CEEEEEEECCCCCEEEEEEE
T ss_conf 54999998599955999996
No 225
>PRK00758 GMP synthase subunit A; Validated
Probab=55.96 E-value=16 Score=17.07 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=42.7
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCCCCCC--CCCHHHHHHHHHHHH
Q ss_conf 289836787127889999999999999879889996158656888875399899992548843--431023566643210
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG--EDGLVQAILELLEIP 78 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~lhG~~g--Edg~iq~~le~~~ip 78 (300)
|.||=-|.|. ...|...|+++|.++..+..+...... .. +||-|+.- -|+ + +.+....++...++|
T Consensus 2 IlviD~~dsf--------t~ni~~~l~~~g~~v~v~~~~~~~~~i-~~-~~dgiilS-~GP-~~~~~~~~~~~i~~~~iP 69 (184)
T PRK00758 2 ILVINNGGQY--------NHLIHRTLRYLGVDAKIIPNTTPLEEI-KA-EPDGIILS-GGP-EIERAGNCEEYLLELDVP 69 (184)
T ss_pred EEEEECCCHH--------HHHHHHHHHHCCCEEEEEECCCCHHHH-HH-CCCEEEEC-CCC-CCCCCCCHHHHHHHCCCC
T ss_conf 9999898638--------999999999789928999598989999-63-89989988-999-833322069999865998
Q ss_pred CCC
Q ss_conf 023
Q gi|254781179|r 79 YTH 81 (300)
Q Consensus 79 y~G 81 (300)
..|
T Consensus 70 iLG 72 (184)
T PRK00758 70 ILG 72 (184)
T ss_pred EEE
T ss_conf 899
No 226
>PRK08265 short chain dehydrogenase; Provisional
Probab=55.76 E-value=16 Score=17.04 Aligned_cols=40 Identities=38% Similarity=0.522 Sum_probs=31.3
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
Q ss_conf 28983678712788999999999999987988999615865688887
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA 47 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~ 47 (300)
++++.||.+ -=|++++..|.+.|++|...+.+.+....+.
T Consensus 8 valVTGgs~-------GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~ 47 (261)
T PRK08265 8 VAIVTGGAT-------LIGAAVARALVAAGACVAILDIDADNGAAVA 47 (261)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 899948776-------8999999999987998999979889999999
No 227
>PRK07890 short chain dehydrogenase; Provisional
Probab=55.74 E-value=16 Score=17.04 Aligned_cols=34 Identities=18% Similarity=0.102 Sum_probs=27.7
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28983678712788999999999999987988999615865
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS 41 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~ 41 (300)
++|+.||.+ -=|++++..|-+.|.+|.+.+.+.+
T Consensus 7 ~alVTG~s~-------GIG~aia~~la~~Ga~V~i~~r~~~ 40 (258)
T PRK07890 7 VVVVSGVGP-------GLGTTLAVRAAREGADVVLAARTAE 40 (258)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 899968565-------8999999999987998999979899
No 228
>pfam00072 Response_reg Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.
Probab=55.68 E-value=16 Score=17.04 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEEC
Q ss_conf 9999999999879889996158656888875399899992
Q gi|254781179|r 18 SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV 57 (300)
Q Consensus 18 S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~ 57 (300)
....+...|++.||+|......+.....+...+||+|+-=
T Consensus 10 ~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~~dlvi~D 49 (111)
T pfam00072 10 IRELLRQLLEKEGYVVAEADDGEEALELLKEKRPDLILLD 49 (111)
T ss_pred HHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEE
T ss_conf 9999999999889999998999999999984799899995
No 229
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.40 E-value=16 Score=17.01 Aligned_cols=52 Identities=21% Similarity=0.327 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHH-----HHHHCCCCC
Q ss_conf 8999999999999987988999615865688887539989999254884343102356664-----321002310
Q gi|254781179|r 14 VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL-----LEIPYTHSG 83 (300)
Q Consensus 14 iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~lhG~~gEdg~iq~~le~-----~~ipy~Gs~ 83 (300)
-|...++.+.+.|.+.|+.+ ....||+|+-+ |-||++-..+.. -+||+.|=+
T Consensus 12 ~s~~~~~~~~~~l~~~~~~~-------------~~~~~Dlvi~i-----GGDGT~L~a~~~~~~~~~~vPilGIN 68 (265)
T PRK04885 12 KSKRVASKLKKYLKDFGFIL-------------DEKNPDIVISV-----GGDGTLLSAFHRYENQLDKVRFVGVH 68 (265)
T ss_pred HHHHHHHHHHHHHHHCCCCC-------------CCCCCCEEEEE-----CCCHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 99999999999998769855-------------87789999998-----87399999999863036797589873
No 230
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain; InterPro: IPR005974 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model IPR005972 from INTERPRO.; GO: 0016163 nitrogenase activity, 0051536 iron-sulfur cluster binding, 0009399 nitrogen fixation.
Probab=55.36 E-value=2.9 Score=21.76 Aligned_cols=40 Identities=20% Similarity=0.471 Sum_probs=17.7
Q ss_pred CEEEECCCCCCCCCC---HHHHHHHHHHH----HCCCCCHHHHHHCCC
Q ss_conf 899992548843431---02356664321----002310023320365
Q gi|254781179|r 52 DLAFNVLHGNFGEDG---LVQAILELLEI----PYTHSGILASALSMD 92 (300)
Q Consensus 52 D~vf~~lhG~~gEdg---~iq~~le~~~i----py~Gs~~~~~~l~~d 92 (300)
|.+.|.+ |.|.=+| .+|.+++.+|| -|||.+..=--.||+
T Consensus 210 ey~~N~i-GeyNIqGD~~vl~~Yf~rmGI~VlstFTGng~yD~lr~MH 256 (468)
T TIGR01284 210 EYDVNLI-GEYNIQGDLEVLKKYFERMGIQVLSTFTGNGSYDELRAMH 256 (468)
T ss_pred CCCEEEE-ECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHH
T ss_conf 5006555-3333400089999999863945887635888705667776
No 231
>TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; InterPro: IPR011985 This entry represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring ..
Probab=55.21 E-value=7.9 Score=19.00 Aligned_cols=68 Identities=24% Similarity=0.424 Sum_probs=48.5
Q ss_pred CCCEEEECCCCCCCCC-CHHHHHHHHHH---HHCCCCCHHHHHHCCC-CHHCCCCCCCCEEECCCEEEECCCCCHHH
Q ss_conf 9989999254884343-10235666432---1002310023320365-00100002121000012132022200012
Q gi|254781179|r 50 KPDLAFNVLHGNFGED-GLVQAILELLE---IPYTHSGILASALSMD-KMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 (300)
Q Consensus 50 ~~D~vf~~lhG~~gEd-g~iq~~le~~~---ipy~Gs~~~~~~l~~d-K~~~k~~l~~~gIptp~~~~~~~~~~~~~ 121 (300)
=||=|||+.|| |||+ | .+|-++-. |-|||.....+.+-.+ =...|++=-++|=+. |.+++++.|.+.+
T Consensus 193 lPdGV~N~V~G-FGe~AG--~aLv~HP~v~a~~ftGeT~TG~~i~~~gA~~LKr~s~ELGGKs-P~iVFdDADLeRA 265 (494)
T TIGR02299 193 LPDGVLNLVHG-FGEEAG--KALVAHPDVKAVSFTGETATGSIIMRNGADTLKRFSMELGGKS-PVIVFDDADLERA 265 (494)
T ss_pred CCCCEEEECCC-CHHHHH--HHHHHCCCEEEEEEECCCHHHHHHHHHHHHHCCEECCCCCCCC-CEEEECCCCHHHH
T ss_conf 66870340027-514520--4755088601677524643678999840112370011027998-5788427874468
No 232
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=55.16 E-value=16 Score=16.98 Aligned_cols=40 Identities=28% Similarity=0.219 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEEC
Q ss_conf 9999999999879889996158656888875399899992
Q gi|254781179|r 18 SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV 57 (300)
Q Consensus 18 S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~ 57 (300)
-+..+...|+..||+|............+...+||+|+-=
T Consensus 13 l~~~l~~~L~~~g~~V~~a~~~~~al~~~~~~~~DlviLD 52 (225)
T PRK10529 13 IRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILD 52 (225)
T ss_pred HHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEE
T ss_conf 9999999999889999997999999998611799899980
No 233
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=54.78 E-value=16 Score=16.94 Aligned_cols=82 Identities=17% Similarity=0.295 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCCCCCC------CCCHHHHHHHHHHHHCC---CCCHH
Q ss_conf 9999999999999879889996158656888875399899992548843------43102356664321002---31002
Q gi|254781179|r 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG------EDGLVQAILELLEIPYT---HSGIL 85 (300)
Q Consensus 15 Sl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~lhG~~g------Edg~iq~~le~~~ipy~---Gs~~~ 85 (300)
+..|+ .++++|++.|+++...-+-+. .|+++ ++|..| +|..+..+.+.++.|.+ ++..-
T Consensus 13 T~vt~-~l~~~l~~~G~~v~~~KPv~t---------~D~vl--VEGaGG~~vPl~~~~~~~Dl~~~l~~pvIlV~~~~LG 80 (134)
T cd03109 13 TVATA-ILARALKEKGYRVAPLKPVQT---------YDFVL--VEGAGGLCVPLKEDFTNADVAKELNLPAILVTSAGLG 80 (134)
T ss_pred HHHHH-HHHHHHHHCCCCEEEECHHHC---------CCEEE--EECCCCEEECCCCCCCHHHHHHHHCCCEEEEECCCCC
T ss_conf 99999-999999977991778756672---------79899--9889774600389862999999709998999778878
Q ss_pred HHHHCCCCHHCCCCCCCCEEECCCEE
Q ss_conf 33203650010000212100001213
Q gi|254781179|r 86 ASALSMDKMRSKQVVSSCGVPVCPSI 111 (300)
Q Consensus 86 ~~~l~~dK~~~k~~l~~~gIptp~~~ 111 (300)
+.. +-.++-+.+++.|++..-+.
T Consensus 81 ~IN---htlLt~eal~~~gi~v~G~i 103 (134)
T cd03109 81 SIN---HAFLTIEAARIKGIILNGVL 103 (134)
T ss_pred HHH---HHHHHHHHHHHCCCCEEEEE
T ss_conf 589---99999999998799288999
No 234
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=54.71 E-value=16 Score=16.94 Aligned_cols=89 Identities=25% Similarity=0.242 Sum_probs=37.6
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCCCCC-CCCCHHHHHHHHHHHHCCC
Q ss_conf 983678712788999999999999987988999615865688887539989999254884-3431023566643210023
Q gi|254781179|r 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF-GEDGLVQAILELLEIPYTH 81 (300)
Q Consensus 3 vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~lhG~~-gEdg~iq~~le~~~ipy~G 81 (300)
+|+||-| | |+.++..|.+.++-+..-.... . ...+. .+..+|.+ +++| +..+|...+|-.+=
T Consensus 5 lilgGT~-E-------gr~la~~L~~~~~~~s~ag~~~----~--~~~~~--~~i~~G~~~~~~~-l~~~l~~~~i~~VI 67 (241)
T PRK08057 5 LLLGGTS-E-------ARALARALAPDDTVTSLAGRTL----K--PADLP--GPVRVGGFGGAEG-LAAYLREEGIDLVV 67 (241)
T ss_pred EEEECHH-H-------HHHHHHHHHCCCEEEEEEEECC----C--CCCCC--CCEEECCCCCHHH-HHHHHHHCCCCEEE
T ss_conf 9996708-9-------9999999748998999853025----5--65688--7679888899999-99999967998999
Q ss_pred --CCHHHHHHCCCCHHCCCCCCCCEEECCCEE
Q ss_conf --100233203650010000212100001213
Q gi|254781179|r 82 --SGILASALSMDKMRSKQVVSSCGVPVCPSI 111 (300)
Q Consensus 82 --s~~~~~~l~~dK~~~k~~l~~~gIptp~~~ 111 (300)
+-|.|..++. ...+..++.|||.-++.
T Consensus 68 DATHPfA~~is~---~a~~a~~~~~ipylR~e 96 (241)
T PRK08057 68 DATHPYAAQISA---NAAAACRALGIPYLRLE 96 (241)
T ss_pred ECCCCCHHHHHH---HHHHHHHHHCCEEEEEE
T ss_conf 899970899999---99999998697079996
No 235
>PRK07677 short chain dehydrogenase; Provisional
Probab=54.66 E-value=17 Score=16.93 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=27.7
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28983678712788999999999999987988999615865
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS 41 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~ 41 (300)
++++.||.+ -=|++++..|-+.|.+|.+.+.+++
T Consensus 5 ~alVTGgs~-------GIG~aia~~la~~Ga~V~i~~r~~~ 38 (254)
T PRK07677 5 VVIITGGSS-------GMGKAMAKRFAEEGANVVITGRTKE 38 (254)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 899958767-------8999999999987999999969999
No 236
>LOAD_surE consensus
Probab=53.93 E-value=17 Score=16.86 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=16.6
Q ss_pred HHHHHHHHHCCCEEEEECCCCC
Q ss_conf 9999999987988999615865
Q gi|254781179|r 20 KACASALEDAGFKVSQIDVDRS 41 (300)
Q Consensus 20 ~~i~~aL~~~g~~v~~id~~~~ 41 (300)
+++.++|++.||+|+.+-++++
T Consensus 17 ~aL~~~l~~~g~~V~vvAP~~~ 38 (192)
T LOAD_surE 17 RALAEALKEEGAEVTVVAPDRE 38 (192)
T ss_pred HHHHHHHHHCCCEEEEECCCCC
T ss_conf 9999999878996999877998
No 237
>PRK11173 two-component response regulator; Provisional
Probab=53.64 E-value=17 Score=16.83 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=33.8
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECC
Q ss_conf 9999999998798899961586568888753998999925
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVL 58 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~l 58 (300)
+..+...|+..||+|............+....||+|+-=+
T Consensus 16 ~~~l~~~L~~~G~~V~~a~~~~ea~~~l~~~~~DlvilDi 55 (237)
T PRK11173 16 RNTLKSIFEAEGYDVFEATDGAEMHQILSENDINLVIMDI 55 (237)
T ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEEC
T ss_conf 9999999998899999989999999998638998999938
No 238
>PRK09186 flagellin modification protein A; Provisional
Probab=53.37 E-value=17 Score=16.80 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=28.2
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 289836787127889999999999999879889996158656
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV 42 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~ 42 (300)
++|+.||.+. =|+++++.|-+.|.+|...|.+.+.
T Consensus 6 ~~lVTGgs~G-------IG~aia~~la~~Ga~V~~~~~~~~~ 40 (255)
T PRK09186 6 TILITGAGGL-------IGSALVKAILEAGGIVIAADINKEA 40 (255)
T ss_pred EEEEECCCCH-------HHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 8999795868-------9999999999879999999698899
No 239
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=53.30 E-value=17 Score=16.79 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=27.1
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
++++.||.| -=|+++++.|-+.|++|.+.+.+.
T Consensus 7 ~~lITGgs~-------GIG~aia~~la~~G~~Vii~~~~~ 39 (248)
T PRK05557 7 VALVTGASR-------GIGRAIAERLAAQGANVVLNYASS 39 (248)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 899948976-------899999999998799899996985
No 240
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=53.11 E-value=17 Score=16.77 Aligned_cols=42 Identities=14% Similarity=0.066 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCC
Q ss_conf 999999999987988999615865688887539989999254
Q gi|254781179|r 18 SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH 59 (300)
Q Consensus 18 S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~lh 59 (300)
-+..+...|++.||+|......++....+....||+|+--++
T Consensus 12 ~~~~l~~~L~~~g~~V~~a~~~~ea~~~~~~~~~DlvilDi~ 53 (222)
T PRK10643 12 LLQGLILAAQTEGYACDGVSTAREAEQSLESGHYSLVVLDLG 53 (222)
T ss_pred HHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECC
T ss_conf 999999999978999999899999999997489989999688
No 241
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=53.07 E-value=17 Score=16.77 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 9999999999998798899961586
Q gi|254781179|r 16 LSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 16 l~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
|..-.+++..|...|++|+.+-+++
T Consensus 16 i~aL~~~~~~~~~~~~~V~VvAP~~ 40 (261)
T PRK13931 16 LEVLEQIATELAGPGGEVWTVAPAF 40 (261)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 9999999998732898599980599
No 242
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=53.04 E-value=18 Score=16.77 Aligned_cols=35 Identities=34% Similarity=0.398 Sum_probs=28.6
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 289836787127889999999999999879889996158656
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV 42 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~ 42 (300)
++|+.||.+ -=|++++..|-+.|.+|.+.+.+++.
T Consensus 9 valVTGgs~-------GIG~a~A~~la~~Ga~V~i~~~~~~~ 43 (262)
T PRK13394 9 TAVVTGAAS-------GIGKEIALELARAGAAVAIADLNQDG 43 (262)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 899958577-------89999999999879999999798899
No 243
>PRK06101 short chain dehydrogenase; Provisional
Probab=52.99 E-value=18 Score=16.76 Aligned_cols=41 Identities=27% Similarity=0.270 Sum_probs=30.3
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHC
Q ss_conf 898367871278899999999999998798899961586568888753
Q gi|254781179|r 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL 49 (300)
Q Consensus 2 ~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~ 49 (300)
+++.||.| -=|+++++.|.+.|++|+.++-+++....+...
T Consensus 4 vlITGass-------GIG~a~A~~la~~G~~Vi~~~R~~~~l~~~~~~ 44 (241)
T PRK06101 4 VLITGATS-------GIGKQLALDYAKAGWKVIACGRNEAVLDELHDQ 44 (241)
T ss_pred EEEECCCH-------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
T ss_conf 99922404-------999999999998799899998999999999973
No 244
>pfam01370 Epimerase NAD dependent epimerase/dehydratase family. This family of proteins utilize NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions.
Probab=52.92 E-value=18 Score=16.75 Aligned_cols=49 Identities=24% Similarity=0.440 Sum_probs=34.0
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC-----------------------CHHHHHHHCCCCEEEECC
Q ss_conf 98367871278899999999999998798899961586-----------------------568888753998999925
Q gi|254781179|r 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-----------------------SVGLVLAHLKPDLAFNVL 58 (300)
Q Consensus 3 vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~-----------------------~~~~~l~~~~~D~vf~~l 58 (300)
++.||.. -=|..+++.|.+.||+|..++... .+...+...+||.||++.
T Consensus 2 LItGasG-------fiG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~D~VihlA 73 (235)
T pfam01370 2 LVTGGTG-------FIGSALVRRLLQEGYEVIVLGRRRRSESLNTGRIRFRFHEGDLTDPDALERLLAEVQPDAVIHLA 73 (235)
T ss_pred EEECCCC-------HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEECC
T ss_conf 9972897-------99999999999787989999899730122211467659996588999999998538998999897
No 245
>PRK09242 tropinone reductase; Provisional
Probab=52.61 E-value=18 Score=16.72 Aligned_cols=35 Identities=26% Similarity=0.297 Sum_probs=28.4
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 289836787127889999999999999879889996158656
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV 42 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~ 42 (300)
++++.||.| . + |++++..|.+.|++|.+++.+++.
T Consensus 12 ~alITGgs~---G--I--G~a~a~~la~~Ga~V~~~~r~~~~ 46 (258)
T PRK09242 12 TALITGASK---G--I--GLAIARELLGLGADVLIVARDADA 46 (258)
T ss_pred EEEEECCCC---H--H--HHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 999948486---8--9--999999999879989999698899
No 246
>PRK07577 short chain dehydrogenase; Provisional
Probab=52.56 E-value=18 Score=16.72 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=25.5
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 28983678712788999999999999987988999615
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV 38 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~ 38 (300)
++|+.||.+ -=|+++++.|-+.|++|+.++-
T Consensus 5 ~alITGas~-------GIG~aia~~la~~G~~Vv~~~r 35 (234)
T PRK07577 5 TVLVTGATK-------GIGLALSLRLANLGHQVIGIAR 35 (234)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEEC
T ss_conf 899937788-------8999999999987999999634
No 247
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=52.50 E-value=18 Score=16.71 Aligned_cols=37 Identities=27% Similarity=0.427 Sum_probs=29.1
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf 28983678712788999999999999987988999615865688
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL 44 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~ 44 (300)
++|+.||.+ . =|+++++.|.+.|.+|.+.|.++....
T Consensus 5 valITG~s~---G----IG~aia~~la~~Ga~V~i~~r~~~~~~ 41 (250)
T TIGR03206 5 TAIVTGGGG---G----IGGATCRRFAEEGAKVAVFDLNREAAE 41 (250)
T ss_pred EEEEECCCC---H----HHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 999968576---8----999999999987999999979889999
No 248
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=52.03 E-value=18 Score=16.66 Aligned_cols=37 Identities=19% Similarity=0.352 Sum_probs=29.1
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH
Q ss_conf 2898367871278899999999999998798899961586568888
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL 46 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l 46 (300)
||||-+|. ||-+.+++|.+.|+++++++...+..-.+
T Consensus 4 VAIIGAG~---------SGL~a~K~lle~G~~~~~FE~~~~iGG~W 40 (532)
T pfam00743 4 VAVIGAGV---------SGLSSIKCCLEEGLEPTCFERSDDIGGLW 40 (532)
T ss_pred EEEECCCH---------HHHHHHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf 99989729---------99999999987799829997799973506
No 249
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=51.99 E-value=18 Score=16.66 Aligned_cols=63 Identities=21% Similarity=0.324 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCC----HHHHHH--HCCCCEEEECCCCCCC---CCCHHHHHHHHHHHHCCCC
Q ss_conf 999999999987988999615865----688887--5399899992548843---4310235666432100231
Q gi|254781179|r 18 SGKACASALEDAGFKVSQIDVDRS----VGLVLA--HLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHS 82 (300)
Q Consensus 18 S~~~i~~aL~~~g~~v~~id~~~~----~~~~l~--~~~~D~vf~~lhG~~g---Edg~iq~~le~~~ipy~Gs 82 (300)
.+.-+++.|.+.|++|...-.-.+ +...+. ..+.|+|+-. |..| .|-+.+++.+.+|.+.+-.
T Consensus 20 N~~~l~~~L~~~G~~v~~~~~v~D~~~~I~~al~~~~~~~d~vi~t--GGlGPT~DDiT~eavA~a~g~~l~~~ 91 (170)
T cd00885 20 NAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITT--GGLGPTHDDLTREAVAKAFGRPLVLD 91 (170)
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE--CCCCCCCCCCHHHHHHHHHCCCCEEC
T ss_conf 4999999999779826689993988999999999997419999994--78778998538999999948982789
No 250
>PRK00346 surE stationary phase survival protein SurE; Provisional
Probab=51.82 E-value=14 Score=17.35 Aligned_cols=19 Identities=32% Similarity=0.330 Sum_probs=11.5
Q ss_pred HHHHHHHHHCCCEEEEECCC
Q ss_conf 99999999879889996158
Q gi|254781179|r 20 KACASALEDAGFKVSQIDVD 39 (300)
Q Consensus 20 ~~i~~aL~~~g~~v~~id~~ 39 (300)
+++.++|++. ++|+.+-++
T Consensus 17 ~~L~~~l~~~-~~V~VvAP~ 35 (246)
T PRK00346 17 AALAEALREL-ADVTVVAPD 35 (246)
T ss_pred HHHHHHHHHC-CCEEEEECC
T ss_conf 9999999756-989999138
No 251
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=51.63 E-value=18 Score=16.62 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHCCCEEEEEC
Q ss_conf 99999999998798899961
Q gi|254781179|r 18 SGKACASALEDAGFKVSQID 37 (300)
Q Consensus 18 S~~~i~~aL~~~g~~v~~id 37 (300)
....+++.|.+.||+|.++.
T Consensus 20 ~~~~la~~L~~~Gh~V~v~~ 39 (359)
T cd03823 20 VAHDLAEALAKRGHEVAVLT 39 (359)
T ss_pred HHHHHHHHHHHCCCEEEEEE
T ss_conf 99999999997799899995
No 252
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=51.60 E-value=18 Score=16.62 Aligned_cols=31 Identities=35% Similarity=0.557 Sum_probs=25.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
|+||-|| ..|.+++.+|.+.|++|.++|.+.
T Consensus 259 VaVIGAG---------IAGas~A~~LA~rG~~VtVlDr~~ 289 (660)
T PRK01747 259 AAIIGGG---------IAGAALALALARRGWQVTLYEADE 289 (660)
T ss_pred EEEECCH---------HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 8998938---------999999999997899689994798
No 253
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=51.57 E-value=18 Score=16.62 Aligned_cols=12 Identities=25% Similarity=0.420 Sum_probs=9.8
Q ss_pred HHHHHHHHCCCC
Q ss_conf 666432100231
Q gi|254781179|r 71 ILELLEIPYTHS 82 (300)
Q Consensus 71 ~le~~~ipy~Gs 82 (300)
++|.+|..|+|+
T Consensus 238 lFeelGf~YiGP 249 (627)
T COG1154 238 LFEELGFNYIGP 249 (627)
T ss_pred HHHHHCCEEECC
T ss_conf 589818746788
No 254
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=51.48 E-value=19 Score=16.61 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=7.8
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 1023566643210
Q gi|254781179|r 66 GLVQAILELLEIP 78 (300)
Q Consensus 66 g~iq~~le~~~ip 78 (300)
..++.+|+..|||
T Consensus 95 ~sL~~~Lk~~gip 107 (368)
T COG0505 95 ESLDEYLKEEGIP 107 (368)
T ss_pred CCHHHHHHHCCCC
T ss_conf 5899999976997
No 255
>PRK03670 competence damage-inducible protein A; Provisional
Probab=51.47 E-value=19 Score=16.61 Aligned_cols=62 Identities=23% Similarity=0.335 Sum_probs=41.4
Q ss_pred HHHHHHHHHHCCCEEEEECC--CC--CHHHHHH---HCCCCEEEECCCCCCC---CCCHHHHHHHHHHHHCCCC
Q ss_conf 99999999987988999615--86--5688887---5399899992548843---4310235666432100231
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDV--DR--SVGLVLA---HLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHS 82 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~--~~--~~~~~l~---~~~~D~vf~~lhG~~g---Edg~iq~~le~~~ipy~Gs 82 (300)
+.-+++.|.+.|++|..+-+ |+ .+...+. ..+.|+||-. |+.| .|-+.+++.+.+|.|.+-.
T Consensus 22 s~~la~~L~~~Gi~v~~~~~V~Dd~~~I~~~l~~~~~~~~d~Vi~t--GGLGPT~DDiT~eavA~a~g~~L~~~ 93 (252)
T PRK03670 22 SAFIAQKLTEKGYWVRRITTVGDDVEEIKSVILEALDRKPEVLIIS--GGLGPTHDDVTMLAVAKALGRELVLC 93 (252)
T ss_pred HHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEC--CCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 9999999996798188999969889999999999985379999983--88279972668999999839982539
No 256
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=51.40 E-value=19 Score=16.60 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=11.2
Q ss_pred HHHHHHHHHHCCCEEEEECC
Q ss_conf 99999999987988999615
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDV 38 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~ 38 (300)
|...+..|.+.|++|.+++.
T Consensus 37 GLtAAy~LAk~g~Kv~i~E~ 56 (257)
T PRK04176 37 GLTAAYYLAKAGLKVAVFER 56 (257)
T ss_pred HHHHHHHHHHCCCEEEEEEC
T ss_conf 99999999868965999971
No 257
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=51.28 E-value=19 Score=16.59 Aligned_cols=34 Identities=29% Similarity=0.354 Sum_probs=27.5
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28983678712788999999999999987988999615865
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS 41 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~ 41 (300)
++|+.||.+ . + |+++++.|-+.|.+|.+.+.+.+
T Consensus 16 ~alITGgs~---G--I--G~~ia~~la~~Ga~V~i~~r~~~ 49 (259)
T PRK06124 16 VALVTGSAR---G--L--GLEIARALAEAGAHVLVNGRNAA 49 (259)
T ss_pred EEEEECCCC---H--H--HHHHHHHHHHCCCEEEEEECCHH
T ss_conf 899928674---8--9--99999999987999999969889
No 258
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=50.58 E-value=19 Score=16.52 Aligned_cols=33 Identities=30% Similarity=0.260 Sum_probs=27.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
++|+.||.| . =|+++++.|.+.|++|..+|.+.
T Consensus 10 ~alITG~s~---G----IG~aia~~la~~Ga~V~~~~r~~ 42 (253)
T PRK08220 10 TVWVTGAAQ---G----IGYAVALAFVEAGAKVIGFDQAF 42 (253)
T ss_pred EEEEECCCC---H----HHHHHHHHHHHCCCEEEEEECCH
T ss_conf 899958856---8----99999999998799999997887
No 259
>pfam00117 GATase Glutamine amidotransferase class-I.
Probab=50.30 E-value=19 Score=16.49 Aligned_cols=38 Identities=26% Similarity=0.286 Sum_probs=30.5
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEE
Q ss_conf 99999999987988999615865688887539989999
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN 56 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~ 56 (300)
-..+...|+++|.++.++-.+.......+..++|.++.
T Consensus 10 t~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~d~iil 47 (187)
T pfam00117 10 TYNLARALRELGVEVEVVPNDTPAEEILELLNPDGIII 47 (187)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCEEEE
T ss_conf 99999999868997999989998699985259998999
No 260
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=50.22 E-value=19 Score=16.48 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 9999999999998798899961
Q gi|254781179|r 16 LSSGKACASALEDAGFKVSQID 37 (300)
Q Consensus 16 l~S~~~i~~aL~~~g~~v~~id 37 (300)
-.....++++|.+.||+|.++-
T Consensus 17 e~~~~~la~~L~~~Gh~V~v~t 38 (375)
T cd03821 17 VRVVLNLSKALAKLGHEVTVAT 38 (375)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9999999999997799899997
No 261
>cd07129 ALDH_KGSADH Alpha-Ketoglutaric Semialdehyde Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA) Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. This CD contains such sequences as those seen in Azospirillum brasilense, KGSADH-II (D-glucarate/D-galactarate-inducible) and KGSADH-III (hydroxy-L-proline-inducible). Both show similar high substrate specificity for KGSA and different coenzyme specificity; KGSADH-II is NAD+-dependent and KGSADH-III is NADP+-dependent. Also included in this CD is the NADP(+)-dependent aldehyde dehydrogenase from Vibrio harveyi which catalyzes the oxidation of long-chain aliphatic aldehydes to acids.
Probab=50.19 E-value=12 Score=17.85 Aligned_cols=58 Identities=21% Similarity=0.151 Sum_probs=34.5
Q ss_pred CCCEEEECCCCCCCCCCHHHHHHHH---HHHHCCCCCHHHHHHC---CCCHHCCCCCCCCEEECCC
Q ss_conf 9989999254884343102356664---3210023100233203---6500100002121000012
Q gi|254781179|r 50 KPDLAFNVLHGNFGEDGLVQAILEL---LEIPYTHSGILASALS---MDKMRSKQVVSSCGVPVCP 109 (300)
Q Consensus 50 ~~D~vf~~lhG~~gEdg~iq~~le~---~~ipy~Gs~~~~~~l~---~dK~~~k~~l~~~gIptp~ 109 (300)
=|+=|||+++|...|-| +.|.+. ..|-||||......+. -.+..-|.+..+.|=.-|-
T Consensus 166 lP~Gv~nvv~G~g~~vg--~~L~~hp~v~~IsFTGSt~vG~~i~~~aa~~~~~k~v~LELGGknp~ 229 (454)
T cd07129 166 LPAGVFSLLQGGGREVG--VALVKHPAIKAVGFTGSRRGGRALFDAAAARPEPIPFYAELGSVNPV 229 (454)
T ss_pred CCHHHEECCCCCCHHHH--HHHHHCCCCCEEEEEECCHHHHHHHHHHHCCCCCCEEEEECCCCCCE
T ss_conf 88778411777928988--99984989655999915479999999984578895588626898835
No 262
>PRK07062 short chain dehydrogenase; Provisional
Probab=49.97 E-value=20 Score=16.46 Aligned_cols=34 Identities=35% Similarity=0.412 Sum_probs=28.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28983678712788999999999999987988999615865
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS 41 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~ 41 (300)
++|+.||.| -=|.++++.|-+.|.+|.+.+-+++
T Consensus 10 ~alITG~s~-------GIG~a~a~~la~~Ga~Vvi~~r~~~ 43 (265)
T PRK07062 10 VAVVTGGSS-------GIGLATVELLLEAGASVAICGRDEE 43 (265)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 899957577-------9999999999987999999979889
No 263
>PRK08589 short chain dehydrogenase; Validated
Probab=49.88 E-value=20 Score=16.45 Aligned_cols=39 Identities=31% Similarity=0.443 Sum_probs=30.3
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH
Q ss_conf 2898367871278899999999999998798899961586568888
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL 46 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l 46 (300)
++|+.||.| -=|+++++.|.+.|.+|...|.++......
T Consensus 8 valVTGas~-------GIG~aiA~~la~~Ga~Vv~~d~~~~~~~~~ 46 (272)
T PRK08589 8 VAVITGAST-------GIGQASAIALAQEGAYVLAVDIAEAVSETV 46 (272)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHHHHHH
T ss_conf 899978256-------999999999998699999983827899999
No 264
>pfam03917 GSH_synth_ATP Eukaryotic glutathione synthase, ATP binding domain.
Probab=49.84 E-value=8.8 Score=18.67 Aligned_cols=13 Identities=31% Similarity=0.698 Sum_probs=6.6
Q ss_pred EEEEECCCCCCCC
Q ss_conf 2564324776421
Q gi|254781179|r 128 YVIKPLKGGSSLG 140 (300)
Q Consensus 128 ~ivKP~~ggsS~G 140 (300)
+|+||-++|++-.
T Consensus 357 yVLKPQREGGGNN 369 (469)
T pfam03917 357 FVLKPQREGGGNN 369 (469)
T ss_pred EEECCCCCCCHHH
T ss_conf 4664767676000
No 265
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.48 E-value=9.4 Score=18.50 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 9999999999879889996158656
Q gi|254781179|r 18 SGKACASALEDAGFKVSQIDVDRSV 42 (300)
Q Consensus 18 S~~~i~~aL~~~g~~v~~id~~~~~ 42 (300)
+|..+++.|.+ .++|..+|++...
T Consensus 56 tG~~~a~~Ls~-~~~vtv~Di~p~~ 79 (254)
T COG4017 56 TGNYTAQMLSK-ADKVTVVDIHPFM 79 (254)
T ss_pred HHHHHHHHHCC-CCEEEEECCCHHH
T ss_conf 24789987330-5657995587888
No 266
>PRK07233 hypothetical protein; Provisional
Probab=49.26 E-value=20 Score=16.39 Aligned_cols=32 Identities=38% Similarity=0.592 Sum_probs=26.5
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28983678712788999999999999987988999615865
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS 41 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~ 41 (300)
|+||-||. ||-..+..|.+.||+|.+++..+.
T Consensus 2 VvVIGaG~---------aGLsaA~~L~~~G~~V~VlEa~~~ 33 (430)
T PRK07233 2 IAIIGGGI---------MGLAAAYRLAKAGHEVTVFEADDQ 33 (430)
T ss_pred EEEECCCH---------HHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 89999778---------999999999839998899958998
No 267
>PRK13702 replication protein; Provisional
Probab=49.23 E-value=20 Score=16.39 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=24.3
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 8999999839998999999999751179
Q gi|254781179|r 273 IFPEMAAYAGYSFRELLLWMVEDASCLR 300 (300)
Q Consensus 273 ~~p~~~~~~G~s~~~li~~ii~~A~~~r 300 (300)
.+-.+|...|++.++||..+|+.-.++|
T Consensus 55 ~l~e~C~~~GlTQAe~ie~LIe~E~~~r 82 (82)
T PRK13702 55 KLLELCEEEGLTQAEMIEKLIERELARR 82 (82)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 9999998838649999999999988439
No 268
>PRK07074 short chain dehydrogenase; Provisional
Probab=49.15 E-value=20 Score=16.38 Aligned_cols=38 Identities=29% Similarity=0.384 Sum_probs=30.3
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf 289836787127889999999999999879889996158656888
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV 45 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~ 45 (300)
++|+.||.+ -=|+++++.|-+.|.+|...|.++.-...
T Consensus 4 valITGgs~-------GIG~aia~~la~~Ga~V~~~~r~~~~~~~ 41 (256)
T PRK07074 4 TALVTGAAG-------GIGQALARRFLAAGDRVLALDIDRAALAA 41 (256)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 899988468-------99999999999869999999798899999
No 269
>PRK05717 oxidoreductase; Validated
Probab=49.08 E-value=20 Score=16.37 Aligned_cols=40 Identities=30% Similarity=0.420 Sum_probs=31.1
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
Q ss_conf 28983678712788999999999999987988999615865688887
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA 47 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~ 47 (300)
|+|+.||.+ -=|.++++.|-+.|.+|.+.|.+++-...+.
T Consensus 12 valITG~s~-------GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~ 51 (255)
T PRK05717 12 VALVTGAAR-------GIGLGIAAWLIAEGWQVVLADLDRERGAKVA 51 (255)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 899958788-------8999999999987998999969889999999
No 270
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.07 E-value=20 Score=16.37 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=29.2
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf 28983678712788999999999999987988999615865688
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL 44 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~ 44 (300)
++++.||.+ -=|+++++.|-+.|++|.+.+.+++-..
T Consensus 8 ~alITGgs~-------GIG~aia~~la~~G~~V~i~~r~~~~~~ 44 (250)
T PRK07231 8 VAIVTGAGS-------GFGEGIARRFAAEGARVVVTDRNQEAAE 44 (250)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 899938886-------8999999999987999999979889999
No 271
>PRK07775 short chain dehydrogenase; Provisional
Probab=49.06 E-value=20 Score=16.37 Aligned_cols=33 Identities=30% Similarity=0.291 Sum_probs=26.2
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
+||+.||.| -=|++++..|-+.|++|.+.+-+.
T Consensus 12 tAlVTGAss-------GIG~aiA~~la~~G~~V~l~~R~~ 44 (275)
T PRK07775 12 PAIVAGASS-------GIGAATAIELAAHGFPVALGARRV 44 (275)
T ss_pred EEEEECCCH-------HHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 799946235-------999999999998799899998989
No 272
>pfam08886 GshA Glutamate-cysteine ligase. This is a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=49.03 E-value=20 Score=16.37 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=31.0
Q ss_pred CC-EEEEECCCCCCCCEEEECCHHHHHHHHH-------HHCCCCCCCCCCCCCCCCCCE
Q ss_conf 86-2564324776421143259899999886-------300366885422333578845
Q gi|254781179|r 126 PP-YVIKPLKGGSSLGIIVIKKDQSIPLDLL-------QSSSWNHGDQLLIEQYVDGIE 176 (300)
Q Consensus 126 ~P-~ivKP~~ggsS~Gv~~v~~~~el~~~~~-------~~~~~~~~~~vlVEefI~G~E 176 (300)
-| +|||..+|.-+.||..|++.+|+...-. ....-..-..+||||=|.-.|
T Consensus 260 kPfV~VKad~GTYGMGIm~v~~~~ei~~Lnrk~RnKM~~~K~g~~v~~viiQEGV~T~e 318 (404)
T pfam08886 260 KPFVFVKADAGTYGMGIMTVRSGDEVLALNRKQRNKMSVIKEGLEVSEVIIQEGVYTFE 318 (404)
T ss_pred CCEEEEECCCCCCCCEEEEECCHHHHHHHCHHHHHHHHHCCCCCCCCEEEEECCCCEEE
T ss_conf 84599967899877337995599999886777776566404887520078966863233
No 273
>PRK06138 short chain dehydrogenase; Provisional
Probab=48.89 E-value=20 Score=16.35 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=30.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf 289836787127889999999999999879889996158656888
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV 45 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~ 45 (300)
++|+.||.| -=|++++..|-+.|.+|.+.|.+.+....
T Consensus 7 valVTGas~-------GIG~aia~~la~~Ga~V~i~~~~~~~~~~ 44 (252)
T PRK06138 7 VAIVTGAGS-------GIGRATAKLFAREGARVVVADRDAEAAER 44 (252)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 899947467-------99999999999879989999688789999
No 274
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=48.62 E-value=21 Score=16.33 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=15.7
Q ss_pred HHCCCCHHCCCCCCCCEEECCC
Q ss_conf 2036500100002121000012
Q gi|254781179|r 88 ALSMDKMRSKQVVSSCGVPVCP 109 (300)
Q Consensus 88 ~l~~dK~~~k~~l~~~gIptp~ 109 (300)
.++.|-+..+.+|++.||.+--
T Consensus 182 ni~gd~~~i~~lL~~mGi~V~~ 203 (421)
T cd01976 182 NIGGDAWASRILLEEMGLRVVA 203 (421)
T ss_pred CCCCCHHHHHHHHHHCCCCEEE
T ss_conf 6763299999999983983799
No 275
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB; InterPro: IPR011879 PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself . It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006817 phosphate transport.
Probab=48.59 E-value=21 Score=16.32 Aligned_cols=119 Identities=18% Similarity=0.274 Sum_probs=63.4
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCHHCCC
Q ss_conf 99999999987988999615865688887539989999254884343102356664321002310023320365001000
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~lhG~~gEdg~iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~ 98 (300)
..-|+-+|++.||+|....-.+.-...++...||+++- +++ +| +...+.+|. +.. +
T Consensus 15 rEl~~~~L~~~gy~v~~A~d~~~A~~~~~E~~PDLILL----------------DWM-LP----G~SGIel~R-~Lr--~ 70 (226)
T TIGR02154 15 RELIAYNLEKAGYDVVEAGDGDEALTLINERLPDLILL----------------DWM-LP----GTSGIELAR-RLR--R 70 (226)
T ss_pred HHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCEEEE----------------CCC-CC----CCCHHHHHH-HHC--C
T ss_conf 99999984168946998079799999986079988996----------------147-89----975699998-734--7
Q ss_pred CCCCCEEECCCEEEECCCCCHHHHHCCC-----CEEEEECCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 0212100001213202220001221058-----62564324776421143259899999886300366885422333578
Q gi|254781179|r 99 VVSSCGVPVCPSILVNRFTMDSQHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 (300)
Q Consensus 99 ~l~~~gIptp~~~~~~~~~~~~~~~~~~-----P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~~~~~~~~vlVEefI~ 173 (300)
--....||+ +.++....+...--|. =+|+|| .|..||-+-++. -...-.+-..++.|+
T Consensus 71 ~~~Tr~iPI---IMLTARGeE~Drv~GLetGADDYvtKP------------FSp~EL~ARikA--VLRR~~P~~~~~~i~ 133 (226)
T TIGR02154 71 EPETRAIPI---IMLTARGEEEDRVRGLETGADDYVTKP------------FSPRELLARIKA--VLRRIRPELSDEVIE 133 (226)
T ss_pred CCCCCCCCE---EEEECCCCCCCCCCCCCCCCCCEEECC------------CCHHHHHHHHHH--HHHCCCHHHHCCEEE
T ss_conf 633148881---774055560001131136887503678------------865889999999--983167124202011
Q ss_pred CCEEE
Q ss_conf 84578
Q gi|254781179|r 174 GIELT 178 (300)
Q Consensus 174 G~E~~ 178 (300)
=-++.
T Consensus 134 ~~~l~ 138 (226)
T TIGR02154 134 VGDLE 138 (226)
T ss_pred ECCEE
T ss_conf 03477
No 276
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=48.44 E-value=21 Score=16.31 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=12.9
Q ss_pred HHHHHHHHHHCCCEEEEECCCC
Q ss_conf 9999999998798899961586
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~ 40 (300)
|..+++.|.+.|.+++..|.+.
T Consensus 40 G~~~A~~l~~~Gakvvv~d~~~ 61 (200)
T cd01075 40 GYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred HHHHHHHHHHCCCEEEEEECCH
T ss_conf 9999999996799799982688
No 277
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.41 E-value=21 Score=16.31 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=27.7
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
|||+.||.+ -=|++++..|-+.|++|.+.+...
T Consensus 7 ValVTGgs~-------GIG~aia~~la~~Ga~V~i~~~~~ 39 (259)
T PRK12745 7 VALVTGGRR-------GIGLGIALALAAGGFDLAINDRPD 39 (259)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 999968678-------999999999998799899997986
No 278
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=48.36 E-value=21 Score=16.30 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=34.1
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCC
Q ss_conf 2898367871278899999999999998798899961586568888753998
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD 52 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D 52 (300)
++++.||.| -=|+++++.|-+.|.+|.+++.++.....+.....+
T Consensus 7 valITGgs~-------GIG~aia~~~a~~Ga~V~i~~r~~~~l~~~~~~~g~ 51 (262)
T TIGR03325 7 VVLVTGGAS-------GLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGD 51 (262)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCC
T ss_conf 899906787-------899999999998799999998998999999986799
No 279
>PRK07479 consensus
Probab=48.06 E-value=21 Score=16.27 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=28.9
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH
Q ss_conf 2898367871278899999999999998798899961586568
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG 43 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~ 43 (300)
++++.||.| -=|+++++.|-+.|++|.+.+.+++..
T Consensus 7 ~alITGgs~-------GIG~a~a~~la~~G~~V~i~~~~~~~~ 42 (252)
T PRK07479 7 VAIVTGAGS-------GFGEGIAKRFAREGAKVVVADLNAAAA 42 (252)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 899938876-------899999999998799999997989999
No 280
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=47.66 E-value=21 Score=16.23 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=25.5
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHCCCE-EEEECC
Q ss_conf 8983678712788999999999999987988-999615
Q gi|254781179|r 2 AVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDV 38 (300)
Q Consensus 2 ~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~-v~~id~ 38 (300)
.++.||.+.=| +.=|.++++.|.+.|++ +..+..
T Consensus 3 ivl~~gGTGGH---v~pAlAl~~~l~~~g~~~v~~~~~ 37 (357)
T COG0707 3 IVLTAGGTGGH---VFPALALAEELAKRGWEQVIVLGT 37 (357)
T ss_pred EEEEECCCCCC---HHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 99996677665---779999999999609717999446
No 281
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=47.48 E-value=21 Score=16.21 Aligned_cols=33 Identities=27% Similarity=0.247 Sum_probs=27.2
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
++++.||.| -=|+++++.|.+.|.+|..+|.++
T Consensus 7 ~alVTG~s~-------GIG~aia~~la~~GA~V~~~d~~~ 39 (261)
T PRK12428 7 TIVVTGVAS-------GIGAEVARLLRFLGARVIGLDRRP 39 (261)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 899978577-------999999999998699999996885
No 282
>PRK06227 consensus
Probab=47.13 E-value=22 Score=16.18 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=28.6
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 289836787127889999999999999879889996158656
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV 42 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~ 42 (300)
++|+.||.| -=|++++..|.+.|.+|.+.|.++..
T Consensus 7 valVTGas~-------GIG~aiA~~la~~Ga~V~i~~~~~~~ 41 (256)
T PRK06227 7 VAIVTGGGQ-------GIGAAIAQTFAENGAKVVIADIDEEA 41 (256)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 899958668-------89999999999879999999698889
No 283
>TIGR02028 ChlP geranylgeranyl reductase; InterPro: IPR011774 This entry represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll..
Probab=47.01 E-value=22 Score=16.17 Aligned_cols=29 Identities=31% Similarity=0.501 Sum_probs=26.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 28983678712788999999999999987988999615
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV 38 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~ 38 (300)
|||+-||+. |.+.+++|.+.|.++++++-
T Consensus 3 VAVvGGGPA---------G~sAAE~LA~aG~~~~L~ER 31 (401)
T TIGR02028 3 VAVVGGGPA---------GASAAETLAKAGIQTFLLER 31 (401)
T ss_pred EEEECCCCC---------HHHHHHHHHHCCCEEEEEEE
T ss_conf 889748974---------16899999850310463320
No 284
>TIGR00600 rad2 DNA excision repair protein (rad2); InterPro: IPR001044 Xeroderma pigmentosum (XP) is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. People's skin cells with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-G is one of the most rare and phenotypically heterogeneous of XP, showing anything from slight to extreme dysfunction in DNA excision repair , . XP-G can be corrected by a 133 Kd nuclear protein, XPGC . XPGC is an acidic protein that confers normal UV resistance in expressing cells . It is a magnesium-dependent, single-strand DNA endonuclease that makes structure-specific endonucleolytic incisions in a DNA substrate containing a duplex region and single-stranded arms , . XPGC cleaves one strand of the duplex at the border with the single-stranded region . XPG belongs to a family of proteins that includes RAD2 from Saccharomyces cerevisiae (Baker's yeast) and rad13 from Schizosaccharomyces pombe (Fission yeast), which are single-stranded DNA endonucleases , ; mouse and human FEN-1, a structure-specific endonuclease; RAD2 from fission yeast and RAD27 from budding yeast; fission yeast exo1, a 5'-3' double-stranded DNA exonuclease that may act in a pathway that corrects mismatched base pairs; yeast DHS1, and yeast DIN7. Sequence alignment of this family of proteins reveals that similarities are largely confined to two regions. The first is located at the N-terminal extremity (N-region) and corresponds to the first 95 to 105 amino acids. The second region is internal (I-region) and found towards the C-terminus; it spans about 140 residues and contains a highly conserved core of 27 amino acids that includes a conserved pentapeptide (E-A-[DE]-A-[QS]). It is possible that the conserved acidic residues are involved in the catalytic mechanism of DNA excision repair in XPG. The amino acids linking the N- and I-regions are not conserved. This entry represents XPGC, an acidic protein that confers normal UV resistance in expressing cells, can correct XP-G. It is a magnesium-dependent, single-strand DNA endonuclease that makes structure-specific endonucleolytic incisions in a DNA substrate containing a duplex region and single-stranded arms. XPGC cleaves one strand of the duplex at the border with the single-stranded region , .; GO: 0003697 single-stranded DNA binding, 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0005634 nucleus.
Probab=46.70 E-value=8.4 Score=18.82 Aligned_cols=110 Identities=20% Similarity=0.163 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCHHHHHCCCCEEEEECCCCCCCCEEEECCH
Q ss_conf 23566643210023100233203650010000212100001213202220001221058625643247764211432598
Q gi|254781179|r 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 (300)
Q Consensus 68 iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~~~~~~~~P~ivKP~~ggsS~Gv~~v~~~ 147 (300)
.|.||.++||||+-.+.+|=|-|.-=..+++ --||=| ++.|. -.||..-|-|=-..- -+=|- .+..
T Consensus 863 ~QELL~lFGiPYI~APmEAEAQCA~L~~~~~---~~G~iT------DDSDv---fLFGa~~vYkN~F~~-nkfVE-yY~~ 928 (1127)
T TIGR00600 863 SQELLRLFGIPYIVAPMEAEAQCAILDLLDL---VDGIIT------DDSDV---FLFGARHVYKNFFNQ-NKFVE-YYQY 928 (1127)
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC---CCCEEE------CCCCE---EECCCCEEECCCCCC-CCCEE-ECCH
T ss_conf 8999985688733463127899789754147---561474------37322---101772311000257-86254-0157
Q ss_pred HHHHHHHHHHCCCCCCCCCCC-CCCCCCCEEEEEECCCCCCCEEEE--CCCCC
Q ss_conf 999998863003668854223-335788457887314444200220--25543
Q gi|254781179|r 148 QSIPLDLLQSSSWNHGDQLLI-EQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 (300)
Q Consensus 148 ~el~~~~~~~~~~~~~~~vlV-EefI~G~E~~v~Vl~~~~~~~~ei--~~~~~ 197 (300)
+++.. .++-+..=|| =-|+=|-+||-|+=+=|.+..+|| .+|+.
T Consensus 929 ~d~~~------~LGldr~~LI~LA~LLGSDYT~Gl~~vG~V~A~EiL~EFPG~ 975 (1127)
T TIGR00600 929 EDIHN------QLGLDRNKLINLAYLLGSDYTEGLPTVGPVSAMEILNEFPGD 975 (1127)
T ss_pred HHHHH------HHCCCHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHCCCCC
T ss_conf 99998------728888899999875142443578866404466555238786
No 285
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=46.68 E-value=22 Score=16.14 Aligned_cols=38 Identities=26% Similarity=0.352 Sum_probs=29.9
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf 289836787127889999999999999879889996158656888
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV 45 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~ 45 (300)
++|+.||.+ -=|+++++.|-+.|.+|.+.|.+.+....
T Consensus 7 valVTGas~-------GIG~aia~~la~~Ga~V~i~d~~~~~~~~ 44 (256)
T PRK07067 7 VALLTGAAS-------GIGEAVAQRYLREGARVVLADIKPARAAL 44 (256)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 899937677-------89999999999879999999798899999
No 286
>PRK12828 short chain dehydrogenase; Provisional
Probab=46.50 E-value=22 Score=16.12 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=28.5
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH
Q ss_conf 2898367871278899999999999998798899961586568
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG 43 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~ 43 (300)
++++.||.+ -=|++++..|-+.|.+|.+.+.+.+..
T Consensus 9 valITGas~-------GIG~aia~~la~~Ga~V~i~~~~~~~~ 44 (239)
T PRK12828 9 VVAITGGFG-------GLGRATAAWLAARGARVALIGRGAAPL 44 (239)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 899947254-------899999999998799899997987789
No 287
>PRK07774 short chain dehydrogenase; Provisional
Probab=46.30 E-value=22 Score=16.10 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=28.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28983678712788999999999999987988999615865
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS 41 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~ 41 (300)
++|+.||.+ -=|++++..|-+.|.+|.+.|.+.+
T Consensus 8 ~alVTGgs~-------GiG~aia~~la~~Ga~V~i~~~~~~ 41 (250)
T PRK07774 8 VAIVTGAAG-------GIGQAYAEALAREGASVVVADINAE 41 (250)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 899979768-------8999999999986999999979889
No 288
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.19 E-value=22 Score=16.09 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=26.5
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
||++.|-. .||.++++.|.+.|++|...|...
T Consensus 2 ~a~V~GlG--------~sG~s~a~~L~~~G~~v~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLG--------RSGIAAARLLKAQGWEVVVSERND 33 (459)
T ss_pred EEEEEEEC--------HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 49999548--------999999999997899599998989
No 289
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=46.07 E-value=22 Score=16.08 Aligned_cols=48 Identities=21% Similarity=0.229 Sum_probs=32.9
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH----HHHHCCCCEEE
Q ss_conf 28983678712788999999999999987988999615865688----88753998999
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----VLAHLKPDLAF 55 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~----~l~~~~~D~vf 55 (300)
++|+.||.+ -=|++++..|-+.|.+|.+.+.+.+-.. .+.....+.++
T Consensus 13 valVTGas~-------GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~l~~~g~~~~~ 64 (255)
T PRK06113 13 CAIITGAGA-------GIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFA 64 (255)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEE
T ss_conf 899958877-------8999999999987999999969889999999999965990899
No 290
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=45.83 E-value=23 Score=16.05 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=31.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH
Q ss_conf 289836787127889999999999999879889996158656888875
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH 48 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~ 48 (300)
++|+.||.| -=|+++++.|-+.|++|..++.+.+-...+.+
T Consensus 8 ~alVTGas~-------GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~ 48 (263)
T PRK06200 8 VALITGGGS-------GIGRALVERFLAEGARVAVLERSAEKCASLRQ 48 (263)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
T ss_conf 899958667-------99999999999879999999799999999999
No 291
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=45.71 E-value=23 Score=16.04 Aligned_cols=77 Identities=17% Similarity=0.155 Sum_probs=49.4
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH------HHHHHHCCCCEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 289836787127889999999999999879889996158656------88887539989999254884343102356664
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------GLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~------~~~l~~~~~D~vf~~lhG~~gEdg~iq~~le~ 74 (300)
|||+....+--.-..+ .+.+-+.+.+.||++.+...+.+. ...+...++|-++..- ...+......|..
T Consensus 2 IGvivp~i~npf~~~l--~~gi~~~~~~~gy~~ll~~~~~~~~~e~~~i~~l~~~~vdgiIi~~---~~~~~~~~~~l~~ 76 (270)
T cd06296 2 IGLVFPDLDSPWASEV--LRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVT---PELTSAQRAALRR 76 (270)
T ss_pred EEEEECCCCCHHHHHH--HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC---CCCCHHHHHHHHH
T ss_conf 9999799853999999--9999999998499899997999969999999999954999999906---8899999999997
Q ss_pred HHHHCCCC
Q ss_conf 32100231
Q gi|254781179|r 75 LEIPYTHS 82 (300)
Q Consensus 75 ~~ipy~Gs 82 (300)
.|+|++--
T Consensus 77 ~~iPvV~i 84 (270)
T cd06296 77 TGIPFVVV 84 (270)
T ss_pred CCCCEEEE
T ss_conf 49999998
No 292
>PRK01215 competence damage-inducible protein A; Provisional
Probab=45.46 E-value=23 Score=16.02 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=42.7
Q ss_pred HHHHHHHHHHCCCEEEEECC-CCC---HHHHH--HHCCCCEEEECCCCCCC---CCCHHHHHHHHHHHHCCCCC
Q ss_conf 99999999987988999615-865---68888--75399899992548843---43102356664321002310
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDV-DRS---VGLVL--AHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSG 83 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~-~~~---~~~~l--~~~~~D~vf~~lhG~~g---Edg~iq~~le~~~ipy~Gs~ 83 (300)
+.-+++.|.+.|+++...-. .++ +...+ ...+.|+||-. |..| .|-+-+++.+.+|.|.+-..
T Consensus 25 s~~la~~L~~~G~~v~~~~~V~D~~~~I~~~l~~a~~r~d~Vi~t--GGLGPT~DDlT~eavA~a~g~~L~~~~ 96 (264)
T PRK01215 25 ASWIARRLTYLGYSVRRIVVVPDDEEEIVEAFREAIGRADVVVST--GGLGPTYDDMTNEGFAKALGVELELNE 96 (264)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEE--CCCCCCCCHHHHHHHHHHHCCCEEECH
T ss_conf 999999999779938899992898999999999997438999994--895799856799999998499849849
No 293
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=45.45 E-value=23 Score=16.01 Aligned_cols=39 Identities=18% Similarity=0.007 Sum_probs=25.0
Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCCHHHH-HHHHHHHHCC
Q ss_conf 68888753998999925488434310235-6664321002
Q gi|254781179|r 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQA-ILELLEIPYT 80 (300)
Q Consensus 42 ~~~~l~~~~~D~vf~~lhG~~gEdg~iq~-~le~~~ipy~ 80 (300)
+...+++..+|+||-=-+...|..|.+.. +-|++|+|++
T Consensus 104 La~~i~~~~~DLVl~G~~s~D~~~gqvg~~lAe~Lg~P~v 143 (256)
T PRK03359 104 LAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAI 143 (256)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHCCCHH
T ss_conf 9999987299999992510259998522899998298522
No 294
>PRK08862 short chain dehydrogenase; Provisional
Probab=45.15 E-value=23 Score=15.99 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=28.1
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28983678712788999999999999987988999615865
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS 41 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~ 41 (300)
++++.||.|. =|++++..|.+.|.+|.+.+.+++
T Consensus 7 v~lITGas~G-------IG~aiA~~~A~~Ga~Vii~~r~~~ 40 (227)
T PRK08862 7 IILITSAGSV-------LGRTISCHFARLGATLILCDQDQS 40 (227)
T ss_pred EEEEECCCCH-------HHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 9999798879-------999999999987999999969999
No 295
>PRK07208 hypothetical protein; Provisional
Probab=45.01 E-value=23 Score=15.97 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=25.6
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
|+||-+|+ ||..++..|.+.|++|.+++.+.
T Consensus 6 v~IiGAG~---------~GL~aA~~L~~~g~~v~vlEk~~ 36 (474)
T PRK07208 6 VVIIGAGP---------AGLTAAYELVKRGYPVTILEADP 36 (474)
T ss_pred EEEECCCH---------HHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99989768---------99999999986899759997899
No 296
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=44.68 E-value=24 Score=15.94 Aligned_cols=117 Identities=17% Similarity=0.161 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHH--HHHCCCCEEEECCCCCCCCC----CHHHHHHHHHHHHCCCCCHHHH-HHC
Q ss_conf 9999999999879889996158656888--87539989999254884343----1023566643210023100233-203
Q gi|254781179|r 18 SGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVLHGNFGED----GLVQAILELLEIPYTHSGILAS-ALS 90 (300)
Q Consensus 18 S~~~i~~aL~~~g~~v~~id~~~~~~~~--l~~~~~D~vf~~lhG~~gEd----g~iq~~le~~~ipy~Gs~~~~~-~l~ 90 (300)
|-......|++.|.+|..+|.+. .... .-..+--.||--.=|+++-| ..|..+....|+|++=-+-.+. -+|
T Consensus 114 T~~lf~~tl~~~Gi~v~fvd~~d-~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl~ 192 (426)
T COG2873 114 TYNLFSHTLKRLGIEVRFVDPDD-PENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYLC 192 (426)
T ss_pred HHHHHHHHHHHCCCEEEEECCCC-HHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCEEC
T ss_conf 48899988886481799927999-89999873822406878751688766357799999998759938983677730043
Q ss_pred C------CC--HHCCCCCCCCEEECCCEEEECCCCCHHHHHCCCCEEEEECCCC
Q ss_conf 6------50--0100002121000012132022200012210586256432477
Q gi|254781179|r 91 M------DK--MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136 (300)
Q Consensus 91 ~------dK--~~~k~~l~~~gIptp~~~~~~~~~~~~~~~~~~P~ivKP~~gg 136 (300)
+ |= .-.-+++--+|--. -..+++....+....-.||.+.+|.-+-
T Consensus 193 rP~~hGADIVvHS~TK~igGhGt~i-GG~iVD~G~FDw~~~~rfP~~~~p~p~Y 245 (426)
T COG2873 193 RPIEHGADIVVHSATKYIGGHGTAI-GGVIVDGGKFDWTANGRFPEFTTPDPSY 245 (426)
T ss_pred CHHHCCCCEEEEEECCCCCCCCCCC-CEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 6656188779986030126776542-4079867754554577786667898442
No 297
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=44.65 E-value=24 Score=15.94 Aligned_cols=35 Identities=31% Similarity=0.367 Sum_probs=28.4
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 289836787127889999999999999879889996158656
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV 42 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~ 42 (300)
++|+.||.+ -=|+++++.|.+.|++|.+.+.+.+.
T Consensus 6 ~alITGas~-------GIG~aia~~la~~Ga~V~~~~~~~~~ 40 (258)
T PRK12429 6 TALVTGAAS-------GIGLEIALALAKEGAKVVIADLNDEA 40 (258)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 899948875-------89999999999879999999798899
No 298
>PRK08339 short chain dehydrogenase; Provisional
Probab=44.63 E-value=24 Score=15.93 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=28.5
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 289836787127889999999999999879889996158656
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV 42 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~ 42 (300)
++|+.||.| -=|.++++.|-+.|++|.+++.+++-
T Consensus 10 ~alITG~s~-------GIG~aiA~~la~~Ga~V~i~~r~~~~ 44 (263)
T PRK08339 10 LAFTTASSK-------GIGFGVARVLARAGADVIILSRNEEN 44 (263)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 899916260-------99999999999869999999798899
No 299
>PRK07041 short chain dehydrogenase; Provisional
Probab=44.60 E-value=24 Score=15.93 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=28.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28983678712788999999999999987988999615865
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS 41 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~ 41 (300)
++|+.||.| -=|+++++.|.+.|++|.+.+.+++
T Consensus 9 ~~lITGgs~-------GIG~aia~~la~~Ga~V~i~~r~~~ 42 (240)
T PRK07041 9 KVLVVGGSS-------GIGLAAARAFAARGADVTIASRSRE 42 (240)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 899957788-------8999999999987999999959889
No 300
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=44.59 E-value=11 Score=18.17 Aligned_cols=18 Identities=11% Similarity=0.174 Sum_probs=10.9
Q ss_pred HHHCCCCHHCCCCCCCCE
Q ss_conf 320365001000021210
Q gi|254781179|r 87 SALSMDKMRSKQVVSSCG 104 (300)
Q Consensus 87 ~~l~~dK~~~k~~l~~~g 104 (300)
.+.+||+.++.-++...|
T Consensus 256 MCkAMNRSl~nVlfggfg 273 (459)
T PRK09444 256 MCKAMNRSFISVIAGGFG 273 (459)
T ss_pred HHHHHCCCHHHHHHCCCC
T ss_conf 999858748987314347
No 301
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=44.55 E-value=24 Score=15.93 Aligned_cols=35 Identities=37% Similarity=0.468 Sum_probs=28.6
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 289836787127889999999999999879889996158656
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV 42 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~ 42 (300)
++|+.||.+. =|+++++.|.+.|.+|.+.|.+++-
T Consensus 12 valVTGas~G-------IG~aia~~la~~Ga~V~i~~~~~~~ 46 (278)
T PRK08277 12 VAVITGGGGV-------LGGAMAKELARAGAKVAILDRNQEK 46 (278)
T ss_pred EEEEECCCCH-------HHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 8999586748-------9999999999879989999798899
No 302
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=44.44 E-value=21 Score=16.21 Aligned_cols=48 Identities=21% Similarity=0.309 Sum_probs=27.8
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 9999999998798899961586568888753998999925488434310235666432
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~lhG~~gEdg~iq~~le~~~ 76 (300)
-+++.++|+++|+++..+...++ +... --+|+| | |+.+....+|+..|
T Consensus 13 ~rs~~~aL~~lG~~~~~v~~~~d----i~~a-d~lILP---G--G~s~am~~ll~~~g 60 (191)
T PRK13525 13 VREHIAALEALGAEAVEVRRPED----LDEI-DGLILP---G--GESTTMGKLLRDFG 60 (191)
T ss_pred HHHHHHHHHHCCCCEEEECCHHH----HHHC-CEEEEC---C--CCHHHHHHHHHHCC
T ss_conf 99999999987997899899999----9539-989978---9--76589999999868
No 303
>PRK12939 short chain dehydrogenase; Provisional
Probab=44.23 E-value=24 Score=15.90 Aligned_cols=34 Identities=32% Similarity=0.298 Sum_probs=27.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28983678712788999999999999987988999615865
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS 41 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~ 41 (300)
++|+.||.+ . =|+++++.|-+.|++|.+.+.+++
T Consensus 9 valVTGgs~---G----IG~aia~~la~~Ga~Vvi~~~~~~ 42 (250)
T PRK12939 9 RALVTGAAR---G----LGAAFAEALAEAGATVAFNDGLAA 42 (250)
T ss_pred EEEEECCCC---H----HHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 799958366---8----999999999987999999969889
No 304
>PRK06720 hypothetical protein; Provisional
Probab=43.82 E-value=24 Score=15.86 Aligned_cols=49 Identities=27% Similarity=0.334 Sum_probs=33.9
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH----HHHHHHCCCCEEEE
Q ss_conf 289836787127889999999999999879889996158656----88887539989999
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV----GLVLAHLKPDLAFN 56 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~----~~~l~~~~~D~vf~ 56 (300)
++++.||.|. =|++++..|-+.|.+|.+.|.+++- ...+.....+..|-
T Consensus 18 valITGa~~G-------IG~a~A~~la~~Ga~Vvi~d~~~~~~~~~~~~i~~~g~~a~~~ 70 (169)
T PRK06720 18 VAIVTGGGIG-------IGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFV 70 (169)
T ss_pred EEEEECCCCH-------HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9999897548-------9999999999869989995276365999999999749953789
No 305
>KOG1200 consensus
Probab=43.81 E-value=24 Score=15.85 Aligned_cols=40 Identities=33% Similarity=0.450 Sum_probs=30.9
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
Q ss_conf 28983678712788999999999999987988999615865688887
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA 47 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~ 47 (300)
+++++||.|. =|++|++.|.+.|+++...|.+..--....
T Consensus 16 ~~~vtGg~sG-------IGrAia~~la~~Garv~v~dl~~~~A~ata 55 (256)
T KOG1200 16 VAAVTGGSSG-------IGRAIAQLLAKKGARVAVADLDSAAAEATA 55 (256)
T ss_pred EEEEECCCCH-------HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 2487348750-------779999999746967997503224479998
No 306
>PRK07814 short chain dehydrogenase; Provisional
Probab=43.80 E-value=24 Score=15.85 Aligned_cols=35 Identities=31% Similarity=0.276 Sum_probs=28.1
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 289836787127889999999999999879889996158656
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV 42 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~ 42 (300)
++++.||.+ -=|++++..|.+.|.+|.+.+.+++.
T Consensus 12 valITGgs~-------GIG~aia~~la~~Ga~V~i~~~~~~~ 46 (263)
T PRK07814 12 VAVVTGAGR-------GLGAAIALAFAEAGADVLIAARTESQ 46 (263)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 899958966-------89999999999879989999698999
No 307
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=43.68 E-value=24 Score=15.84 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=17.9
Q ss_pred HHHHHHHHHHCCCEEEEECCCC
Q ss_conf 9999999998798899961586
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~ 40 (300)
|.|+.+.|.+.||.++++|.|.
T Consensus 36 A~Al~~~L~~~G~~~~~LDGDn 57 (187)
T TIGR00455 36 ANALEKKLEKKGYRVYVLDGDN 57 (187)
T ss_pred HHHHHHHHHHCCCEEEEECCCE
T ss_conf 9999999996697499975863
No 308
>cd01416 SAICAR_synt_Ade5 Ade5_like 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. Eukaryotic group of SAICAR synthetases represented by the Drosophila melanogaster, N-terminal, SAICAR synthetase domain of bifunctional Ade5. The Ade5 gene product (CAIR-SAICARs) catalyzes the sixth and seventh steps of the de novo biosynthesis of purine nucleotides (also reported as seventh and eighth steps). SAICAR synthetase converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=43.68 E-value=24 Score=15.84 Aligned_cols=46 Identities=7% Similarity=0.071 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHHHHHHCC----CCCEEEEEEEE----ECCCCEEEEEEECC
Q ss_conf 116665544444445775348----76457999999----76898399997472
Q gi|254781179|r 219 IPLDIYKEVQRLAFLAHQAIG----CRGISRSDFLF----DPLSRKVFWLEINV 264 (300)
Q Consensus 219 l~~~~~~~i~~~a~~~~~alg----~~g~~rvDf~~----d~~~g~~~~lEvN~ 264 (300)
++++..+.++++|.++++.+. -+|+.=+|+.+ |..+|++.+.|+-+
T Consensus 151 ~~~~~~~~i~~~al~i~~~l~~~~~~~GiiLvDtK~EFG~d~~~g~ivl~D~it 204 (252)
T cd01416 151 IGKKEVDIMTKSTIAIFEILEKAWATQDCTLVDMKIEFGVDVTTGEILLADVID 204 (252)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEEEEC
T ss_conf 899999999999999999999999978988996178864647899799998007
No 309
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit; InterPro: IPR005726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases . A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore . The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C . A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. This entry represents the alpha subunit from the A1 complex of A-ATPases. The A1 complex contains three copies each of subunits alpha (or A) and beta (or B) (IPR005724 from INTERPRO), both of which form the headpiece that participates in nucleotide binding. However, only the alpha subunit is catalytic, the beta subunit being regulatory in function . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0016820 hydrolase activity acting on acid anhydrides catalyzing transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0016021 integral to membrane, 0016469 proton-transporting two-sector ATPase complex.
Probab=43.59 E-value=24 Score=15.83 Aligned_cols=80 Identities=14% Similarity=0.180 Sum_probs=36.2
Q ss_pred CEEEECC-------CCCCCCCC--HHHHHHHHH---HHHCCCCCHHHHHHCC--------------CCHHCCCCCC--CC
Q ss_conf 8999925-------48843431--023566643---2100231002332036--------------5001000021--21
Q gi|254781179|r 52 DLAFNVL-------HGNFGEDG--LVQAILELL---EIPYTHSGILASALSM--------------DKMRSKQVVS--SC 103 (300)
Q Consensus 52 D~vf~~l-------hG~~gEdg--~iq~~le~~---~ipy~Gs~~~~~~l~~--------------dK~~~k~~l~--~~ 103 (300)
|-+|+.. -|+||--- +.|.|..+- =|-|+||+=..--++. ++...|.+|- ..
T Consensus 217 Dt~F~~AKGGTAAiPGPFGsGKTVT~~~LAkws~a~ivvYiGCGERGNEMt~vl~~FP~l~dp~TG~pLm~RT~LiANTS 296 (584)
T TIGR01043 217 DTLFPIAKGGTAAIPGPFGSGKTVTQQQLAKWSDADIVVYIGCGERGNEMTEVLEEFPELEDPKTGKPLMERTVLIANTS 296 (584)
T ss_pred HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCCHHHHHCCEEEECCC
T ss_conf 01024246775457878888504677777543047379996168875258999984878688635315654205335267
Q ss_pred EEECCCE-EEECCCCCHH--HHHCCCCEEEE
Q ss_conf 0000121-3202220001--22105862564
Q gi|254781179|r 104 GVPVCPS-ILVNRFTMDS--QHLISPPYVIK 131 (300)
Q Consensus 104 gIptp~~-~~~~~~~~~~--~~~~~~P~ivK 131 (300)
|.|++.- ..+..+-... -...||-+.+-
T Consensus 297 NMPVAAREas~Y~GiTiAEYfRD~GYdv~L~ 327 (584)
T TIGR01043 297 NMPVAAREASIYTGITIAEYFRDMGYDVALM 327 (584)
T ss_pred CCCHHHHHHHHHHCCHHHHHHHCCCCCEEEE
T ss_conf 8753440112321102533441168516887
No 310
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit; InterPro: IPR014215 This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by IPR014214 from INTERPRO. This protein is also known as SpoVFA..
Probab=43.48 E-value=25 Score=15.82 Aligned_cols=31 Identities=32% Similarity=0.456 Sum_probs=20.4
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHC-CCEEEEECCCC
Q ss_conf 28983678712788999999999999987-98899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~-g~~v~~id~~~ 40 (300)
|||| ||+-.. -.+.+.|.++ |-++.++.-++
T Consensus 4 iavI-GGDaR~--------lE~I~~L~~~P~Ak~~l~Gf~q 35 (288)
T TIGR02853 4 IAVI-GGDARQ--------LELIRKLEELPDAKISLIGFDQ 35 (288)
T ss_pred EEEE-CCCHHH--------HHHHHHHHHCCCCEEEEECCCC
T ss_conf 9998-376137--------8889999737797899963663
No 311
>PRK12827 short chain dehydrogenase; Provisional
Probab=43.31 E-value=25 Score=15.81 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=27.2
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
++|+.||.+ -=|++++..|.+.|.+|.++|.+.
T Consensus 8 valVTGas~-------GIG~aia~~la~~Ga~V~i~~~~~ 40 (251)
T PRK12827 8 RVLITGGSG-------GLGRAIAVRLAADGADVIVLDIHP 40 (251)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 899968255-------899999999998799899984888
No 312
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=43.30 E-value=25 Score=15.81 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=28.2
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEE
Q ss_conf 99999999987988999615865688887539989999
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN 56 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~ 56 (300)
...+...|++.||++............+...+||+++-
T Consensus 13 ~~~l~~~l~~~g~~v~~~~~g~~~~~~~~~~~~dlil~ 50 (55)
T smart00448 13 RELLKALLEREGYEVDEATDGEEALELLKEEKPDLILL 50 (55)
T ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEE
T ss_conf 99999999978999999889999999997499999999
No 313
>PRK08226 short chain dehydrogenase; Provisional
Probab=43.28 E-value=25 Score=15.80 Aligned_cols=38 Identities=16% Similarity=0.359 Sum_probs=29.8
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf 289836787127889999999999999879889996158656888
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV 45 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~ 45 (300)
++++.||.+ -=|+++++.|.+.|.+|.+.|.++.....
T Consensus 8 valVTGas~-------GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~ 45 (263)
T PRK08226 8 TALITGALQ-------GIGEGIARVFARHGANLILLDISPEIEKL 45 (263)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 899947377-------99999999999879989999698799999
No 314
>COG0014 ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
Probab=43.20 E-value=25 Score=15.80 Aligned_cols=82 Identities=30% Similarity=0.432 Sum_probs=41.7
Q ss_pred EEEECCCCHHHHHHHHHHHHHH----HHHHHCCCEE---EEE-CCCCCHHHHH-H-HCCCCEEEECCCCCCCCCCHHHHH
Q ss_conf 8983678712788999999999----9999879889---996-1586568888-7-539989999254884343102356
Q gi|254781179|r 2 AVLMGGISSEREVSLSSGKACA----SALEDAGFKV---SQI-DVDRSVGLVL-A-HLKPDLAFNVLHGNFGEDGLVQAI 71 (300)
Q Consensus 2 ~vl~GG~s~E~~iSl~S~~~i~----~aL~~~g~~v---~~i-d~~~~~~~~l-~-~~~~D~vf~~lhG~~gEdg~iq~~ 71 (300)
+||-||.. +.+|-++++ ++|++.|... .++ +.++.....+ . ..-.|+++| .|-.+-++..
T Consensus 143 vILRGGse-----a~~Sn~ai~~~i~~aL~~~~lP~~aVqli~~~~R~~v~~ll~l~~yiD~iIP-----RGg~~Li~~v 212 (417)
T COG0014 143 VILRGGSE-----AIHSNAAIVEVIQEALEKAGLPADAVQLIEDTDREEVLELLRLDGYIDLVIP-----RGGAGLIRRV 212 (417)
T ss_pred EEEECCHH-----HHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHCCCEEEEEC-----CCCHHHHHHH
T ss_conf 99707577-----7664799999999999871999888211167887999999820676369973-----8957999999
Q ss_pred HHHHHHHCCCCCHHHHHHCCCC
Q ss_conf 6643210023100233203650
Q gi|254781179|r 72 LELLEIPYTHSGILASALSMDK 93 (300)
Q Consensus 72 le~~~ipy~Gs~~~~~~l~~dK 93 (300)
-|...||..+.+.--+.+-.|+
T Consensus 213 ~~~a~vPVi~~~~G~CHiyvd~ 234 (417)
T COG0014 213 VENATVPVIEHGVGNCHIYVDE 234 (417)
T ss_pred HHCCCCCEEECCCCEEEEEECC
T ss_conf 8479587885475037999626
No 315
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.93 E-value=25 Score=15.77 Aligned_cols=34 Identities=32% Similarity=0.552 Sum_probs=28.1
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28983678712788999999999999987988999615865
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS 41 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~ 41 (300)
++++.||.| -=|+++++.|-+.|++|.+.+.+++
T Consensus 7 ~~lITGas~-------GIG~aiA~~la~~Ga~V~i~~r~~~ 40 (253)
T PRK08217 7 VIVITGGAQ-------GLGRAMAEYLAQKGAKLALIDLNQE 40 (253)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 899948877-------8999999999987998999979999
No 316
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=42.82 E-value=25 Score=15.76 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=28.1
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 289836787127889999999999999879889996158656
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV 42 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~ 42 (300)
++|+.||.+ -=|+++++.|.+.|++|.+.+-++..
T Consensus 10 valITGas~-------GIG~aiA~~la~~Ga~V~~~~r~~~~ 44 (260)
T PRK12823 10 VAVVTGAAQ-------GIGRGVALRAAAEGARVVLVDRSELV 44 (260)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 899948867-------89999999999879999999694689
No 317
>CHL00101 trpG anthranilate synthase component 2
Probab=42.49 E-value=25 Score=15.73 Aligned_cols=43 Identities=12% Similarity=-0.014 Sum_probs=31.1
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 999999999879889996158656888875399899992548843
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~lhG~~g 63 (300)
...++..|+++|.++..+..|+-....+...+||.|+.- |.+|
T Consensus 12 t~~i~r~lrelg~~~~v~~~d~~~~~~i~~~~p~gIILS--~GPg 54 (190)
T CHL00101 12 TYNLVQSLGELNSDLLVCRNDEIDLSKIKNLNPRHIIIS--PGPG 54 (190)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEEC--CCCC
T ss_conf 999999998689989998699899999970797989997--9999
No 318
>TIGR02005 PTS-IIBC-alpha PTS system, alpha-glucoside-specific IIBC component; InterPro: IPR010975 This entry represents the fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterised as a maltose transporter, while genes from Fusobacterium and Klebsiella , have been proposed to transport the five non-standard isomers of sucrose.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system.
Probab=42.48 E-value=11 Score=18.02 Aligned_cols=57 Identities=23% Similarity=0.246 Sum_probs=32.8
Q ss_pred CCCCCCCC---CCCEEEEEECCCCCCCEEEECCCCCCCC---CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 42233357---8845788731444420022025543333---11000011222245865211666554444444577534
Q gi|254781179|r 165 QLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKSDFY---SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 (300)
Q Consensus 165 ~vlVEefI---~G~E~~v~Vl~~~~~~~~ei~~~~~~~~---dy~~Ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~al 238 (300)
+.||++|= +|||-+ ..+-+.| ||++|. |+++... +++...+-++.|....++|
T Consensus 408 rfLIlkFn~~tpGRe~~---------------eEEvKLYsKadYKak~--G~~~e~~----~~~~~~~yedkA~~fL~AL 466 (533)
T TIGR02005 408 RFLILKFNIATPGREDE---------------EEEVKLYSKADYKAKK--GESKESK----EAELESEYEDKAAAFLQAL 466 (533)
T ss_pred HHHHHHHCCCCCCCCCC---------------CCCCCCCCCHHHHHCC--CCCCCCC----CCCCCCCHHHHHHHHHHHC
T ss_conf 99987707897568875---------------4432212103455127--8752101----5001578689999999636
Q ss_pred CCCC
Q ss_conf 8764
Q gi|254781179|r 239 GCRG 242 (300)
Q Consensus 239 g~~g 242 (300)
|.++
T Consensus 467 GG~~ 470 (533)
T TIGR02005 467 GGKE 470 (533)
T ss_pred CCCC
T ss_conf 8874
No 319
>PRK06057 short chain dehydrogenase; Provisional
Probab=42.45 E-value=25 Score=15.72 Aligned_cols=40 Identities=35% Similarity=0.436 Sum_probs=31.2
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
Q ss_conf 28983678712788999999999999987988999615865688887
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA 47 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~ 47 (300)
++|+.||.| -=|++++..|-+.|.+|.+.|.++.......
T Consensus 9 valVTGas~-------GIG~aia~~la~~Ga~Vvi~d~~~~~~~~~~ 48 (255)
T PRK06057 9 VAVITGGAS-------GIGLATARRMRAEGATVVVGDIDPEAGKAAA 48 (255)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 899968488-------8999999999986998999969889999999
No 320
>TIGR01969 minD_arch cell division ATPase MinD; InterPro: IPR010224 Proper placement of the bacterial cell division site requires the site-specific inactivation of other potential division sites. In Escherichia coli, selection of the correct mid-cell site is mediated by the MinC, MinD and MinE proteins. Several members of this family are found in archaeal genomes but their function is uncharacterised. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. This entry represents the archaeal MinD family. The exact roles of the various archaeal MinD homologs are unknown. .
Probab=42.11 E-value=26 Score=15.69 Aligned_cols=59 Identities=20% Similarity=0.335 Sum_probs=33.9
Q ss_pred CCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCH--------HHHHCCCCEEEE-E----CCCCCCCCEE
Q ss_conf 10023320365001000021210000121320222000--------122105862564-3----2477642114
Q gi|254781179|r 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIK-P----LKGGSSLGII 142 (300)
Q Consensus 82 s~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~--------~~~~~~~P~ivK-P----~~ggsS~Gv~ 142 (300)
.+|+-++++ |=..+|..+++.|++.--. ++++-..+ .+..+.-|++.= | ++.++-+|+.
T Consensus 139 vNPEi~SIt-DaLK~k~va~~lGt~ilG~-vlNRv~~~~tel~~~eiE~iLevPVl~~vPEDP~VR~AAa~G~P 210 (258)
T TIGR01969 139 VNPEISSIT-DALKVKIVAEKLGTAILGV-VLNRVTRDKTELGREEIEAILEVPVLGVVPEDPEVRRAAAFGEP 210 (258)
T ss_pred ECCCHHHHH-HHHHHHHHHHHCCCCEEEE-EEEECCCCCCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHCCCC
T ss_conf 676544677-7889999987608832468-99602366663788899988479738985698434456424853
No 321
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; InterPro: IPR005757 The tripeptide L-ananyl-gamma-D-glutamyl-meso-diaminopimelic acid is efficiently re-cycled during the formation of bacterial cell wall murein. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase is an essential enzyme in this process which links the tripeptide to UDP-N-acetylmuramate.; GO: 0016874 ligase activity, 0007047 cell wall organization and biogenesis.
Probab=42.10 E-value=26 Score=15.69 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=20.0
Q ss_pred HHHHHHCCCEEEEECCC------------------CCHHHHHHHCCCCEEEE
Q ss_conf 99999879889996158------------------65688887539989999
Q gi|254781179|r 23 ASALEDAGFKVSQIDVD------------------RSVGLVLAHLKPDLAFN 56 (300)
Q Consensus 23 ~~aL~~~g~~v~~id~~------------------~~~~~~l~~~~~D~vf~ 56 (300)
+.-.+++||+|.-.|.+ .-....|+..+||+|..
T Consensus 16 A~~A~~~G~~VtGsDa~vYPPMST~LE~~GIe~~~gfD~~QL~~~~pD~~vi 67 (459)
T TIGR01081 16 AMLAKQLGHEVTGSDANVYPPMSTLLEAQGIEIIEGFDAAQLEPFKPDLVVI 67 (459)
T ss_pred HHHHHHCCCEECCCCCCCCCCHHHHHHHCCCEEECCCCHHHCCCCCCCEEEE
T ss_conf 9999874955701356558865688875573032277844400348887998
No 322
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=41.99 E-value=26 Score=15.68 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=37.9
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH----HCCCCEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 28983678712788999999999999987988999615865688887----5399899992548843431023566643
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA----HLKPDLAFNVLHGNFGEDGLVQAILELL 75 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~----~~~~D~vf~~lhG~~gEdg~iq~~le~~ 75 (300)
++|+.||.|. +-=|.+++.+|.+.|.+|.+.+.++......+ .....+++. .-..++..++.+++..
T Consensus 8 ~alVTGaa~~-----~GiG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~---~Dvs~~~~v~~~~~~~ 78 (262)
T PRK07984 8 RILVTGVASK-----LSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQ---CDVAEDASIDAMFAEL 78 (262)
T ss_pred EEEEECCCCC-----CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEE---CCCCCHHHHHHHHHHH
T ss_conf 7999899997-----259999999999879999998277789999999997549828998---8899999999999999
No 323
>pfam04174 DUF407 Domain of unknown function (DUF407).
Probab=41.75 E-value=18 Score=16.77 Aligned_cols=87 Identities=15% Similarity=0.171 Sum_probs=41.6
Q ss_pred CCCCC-CCEEECCCEEEECC-CCCHHHHHCCCCEEEEECCCCCCCCEEEE--CCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 00021-21000012132022-20001221058625643247764211432--5989999988630036688542233357
Q gi|254781179|r 97 KQVVS-SCGVPVCPSILVNR-FTMDSQHLISPPYVIKPLKGGSSLGIIVI--KKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 (300)
Q Consensus 97 k~~l~-~~gIptp~~~~~~~-~~~~~~~~~~~P~ivKP~~ggsS~Gv~~v--~~~~el~~~~~~~~~~~~~~~vlVEefI 172 (300)
+.+|. +.-+|..++...-+ .+......----+||||+.++++.|+.+- -+.++.+...+...+ ....++.||.+
T Consensus 3 r~lLgE~l~Lp~v~TwWCG~~~~~~~Vl~nl~~lVIkp~~~~~g~~~~~g~~ls~~e~~~l~~~I~~--~P~~~VaQe~v 80 (145)
T pfam04174 3 ERYLGEEPLLPNVPTYWCGEPEELEHVLAHLTELVIKPVGGSGGYGMLVGPAASSAELAEFAERIRA--DPRNYIAQPVL 80 (145)
T ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH--CCCCEEEEECC
T ss_conf 6875987368986503799889999998567655898546778887743410899999999999874--90216964426
Q ss_pred CCCEEEEEECCCCCC
Q ss_conf 884578873144442
Q gi|254781179|r 173 DGIELTCGVMGDASL 187 (300)
Q Consensus 173 ~G~E~~v~Vl~~~~~ 187 (300)
+.- ++.+..++.+
T Consensus 81 ~lS--t~P~~~~g~l 93 (145)
T pfam04174 81 QLS--TVPTLVDGSL 93 (145)
T ss_pred CCC--CCCEEECCCE
T ss_conf 755--5987668916
No 324
>pfam01520 Amidase_3 N-acetylmuramoyl-L-alanine amidase. This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls.
Probab=41.70 E-value=26 Score=15.65 Aligned_cols=52 Identities=27% Similarity=0.277 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECCCC---CHHHHH---HHCCCCEEEECCCCCC
Q ss_conf 1278899999999999998798899961586---568888---7539989999254884
Q gi|254781179|r 10 SEREVSLSSGKACASALEDAGFKVSQIDVDR---SVGLVL---AHLKPDLAFNVLHGNF 62 (300)
Q Consensus 10 ~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~---~~~~~l---~~~~~D~vf~~lhG~~ 62 (300)
.|.++-+.-++.+.+.|++.|++|++.-.++ ++..+. ...++|+.+ -+|-.-
T Consensus 21 ~E~~~nl~ia~~l~~~L~~~G~~V~ltR~~d~~~~l~~R~~~an~~~adl~i-SIH~Ns 78 (172)
T pfam01520 21 REKDLNLDIALRLAKLLEAAGVEVVLTRDDDSFVSLSERANLANSAGADLFV-SIHANA 78 (172)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEE-EECCCC
T ss_conf 3899999999999999887698699946987534078999998615999999-836566
No 325
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=41.53 E-value=26 Score=15.63 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECC
Q ss_conf 99999999998798899961586568888753998999925
Q gi|254781179|r 18 SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVL 58 (300)
Q Consensus 18 S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~l 58 (300)
....+...|++.||+|............+...+||+|+-=+
T Consensus 9 ~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~~dlvi~D~ 49 (113)
T cd00156 9 IRELLRRLLEKEGYEVVEAEDGEEALALLAEEKPDLILLDI 49 (113)
T ss_pred HHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECC
T ss_conf 99999999998899999989999999998757999999779
No 326
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=41.52 E-value=26 Score=15.63 Aligned_cols=41 Identities=29% Similarity=0.311 Sum_probs=31.2
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCC
Q ss_conf 28983678712788999999999999987988999615865688887539
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~ 50 (300)
|+||-+| +. |.+++..|.+.||+|.+...+++....+...+
T Consensus 3 I~IiGaG-------~w--GtAla~~la~n~~~V~l~~r~~~~~~~i~~~~ 43 (159)
T pfam01210 3 IAVLGAG-------SW--GTALAKVLARNGHEVRLWGRDEELIEEINTTR 43 (159)
T ss_pred EEEECCC-------HH--HHHHHHHHHHCCCEEEEEEECCHHHHHHHHCC
T ss_conf 9999969-------99--99999999987998999990436667788669
No 327
>PRK08219 short chain dehydrogenase; Provisional
Probab=41.23 E-value=27 Score=15.60 Aligned_cols=31 Identities=23% Similarity=0.209 Sum_probs=21.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 289836787127889999999999999879889996158
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD 39 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~ 39 (300)
++|+.||.| -=|+++++.|.+.| .++.+.-+
T Consensus 5 valITGas~-------GIG~aia~~la~~g-~vv~~~r~ 35 (226)
T PRK08219 5 TALITGASR-------GIGAAIARALARTH-TLLLAGRP 35 (226)
T ss_pred EEEEECCCH-------HHHHHHHHHHHHCC-CEEEEECC
T ss_conf 999928464-------99999999999699-89999898
No 328
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=41.18 E-value=27 Score=15.60 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=28.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 289836787127889999999999999879889996158656
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV 42 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~ 42 (300)
++|+.||.+ .| |++++..|-+.|.+|.+.|.+++.
T Consensus 12 ~alVTG~s~---GI----G~aiA~~la~~Ga~Vii~~~~~~~ 46 (265)
T PRK07097 12 IALITGASY---GI----GFAIAKAYAEAGATIVFNDIKQEL 46 (265)
T ss_pred EEEEECCCC---HH----HHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 899958576---89----999999999869999999599899
No 329
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.68 E-value=27 Score=15.55 Aligned_cols=29 Identities=24% Similarity=0.205 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf 99999999999879889996158656888
Q gi|254781179|r 17 SSGKACASALEDAGFKVSQIDVDRSVGLV 45 (300)
Q Consensus 17 ~S~~~i~~aL~~~g~~v~~id~~~~~~~~ 45 (300)
.||.++++.|.+.|++|...|.+......
T Consensus 22 ~sG~a~a~~L~~~G~~v~~~D~~~~~~~~ 50 (487)
T PRK03369 22 VTGRAVLAALTRFGARPTVCDDDPDALRP 50 (487)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCHHHHH
T ss_conf 83899999999786979999898257799
No 330
>TIGR01032 rplT_bact ribosomal protein L20; InterPro: IPR005812 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This family covers bacterial ribosomal protein L20 and its chloroplast equivalent.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome.
Probab=40.58 E-value=27 Score=15.57 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99997472658882238999999839998999999999
Q gi|254781179|r 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 (300)
Q Consensus 257 ~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~~ii~ 294 (300)
.|+.=|| .+++.+|+||+.|++.|-.
T Consensus 60 LWI~RIN------------AA~R~~GlsYS~fin~LK~ 85 (114)
T TIGR01032 60 LWITRIN------------AAAREHGLSYSRFINGLKK 85 (114)
T ss_pred HHHHHHH------------HHHHHCCCHHHHHHHHHHH
T ss_conf 8999999------------9987458848998757987
No 331
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.55 E-value=27 Score=15.54 Aligned_cols=76 Identities=28% Similarity=0.326 Sum_probs=45.5
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC---HHH--HHHHCCCCEEEECCCCCCCCCCHHHHH---H
Q ss_conf 28983678712788999999999999987988999615865---688--887539989999254884343102356---6
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---VGL--VLAHLKPDLAFNVLHGNFGEDGLVQAI---L 72 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~---~~~--~l~~~~~D~vf~~lhG~~gEdg~iq~~---l 72 (300)
|+|++=-.++| ....++.+++-|++.|++|.....+.. ... ......+|+|+- .|-||++-.. +
T Consensus 6 VlIV~k~~~~~---A~~~a~~l~~~L~~rGi~v~~~~~~~~~~~~~~~~~~~~~~~Dlvi~-----lGGDGT~L~aar~~ 77 (304)
T PRK02645 6 VIIAYKAGSPQ---AKEAAERCAKQLEARGIKVLMGPSGPKDNPYPVFLASAEELPDLAIV-----LGGDGTVLAAARHL 77 (304)
T ss_pred EEEEECCCCHH---HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEE-----ECCCHHHHHHHHHH
T ss_conf 99998589999---99999999999998889999844434447776200144668889999-----78688999999985
Q ss_pred HHHHHHCCCCCH
Q ss_conf 643210023100
Q gi|254781179|r 73 ELLEIPYTHSGI 84 (300)
Q Consensus 73 e~~~ipy~Gs~~ 84 (300)
...++|..|=+.
T Consensus 78 ~~~~iPilGiN~ 89 (304)
T PRK02645 78 APHDIPILSFNV 89 (304)
T ss_pred CCCCCCEEEEEC
T ss_conf 426998899824
No 332
>CHL00194 ycf39 Ycf39; Provisional
Probab=40.13 E-value=28 Score=15.49 Aligned_cols=103 Identities=12% Similarity=0.135 Sum_probs=54.1
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH--------------------HHCCCCEEEECCCCCC
Q ss_conf 98367871278899999999999998798899961586568888--------------------7539989999254884
Q gi|254781179|r 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------------AHLKPDLAFNVLHGNF 62 (300)
Q Consensus 3 vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l--------------------~~~~~D~vf~~lhG~~ 62 (300)
++.||-. ..|++++..|.+.||+|..+--+..-...+ .-...|.||++.....
T Consensus 4 LV~GATG-------~lGr~vVr~Ll~~G~~Vr~lvRnp~ka~~l~~~Gve~v~gDl~dpesl~~Al~GvdaVi~~~~~~~ 76 (319)
T CHL00194 4 LVIGATG-------TLGRQIVRRALDEGYQVKCLVRNLRKAAFLKEWGAELVYGDLSLPETIPPALEGITAIIDASTSRP 76 (319)
T ss_pred EEECCCC-------HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEEEECCCCC
T ss_conf 9989985-------899999999996889089995786763234215967999427887789999659967999456677
Q ss_pred CCCCH-----HH------HHHHHHHHH-CCCCCHHH------HHHCCCCHHCCCCCCCCEEECCCEEEECC
Q ss_conf 34310-----23------566643210-02310023------32036500100002121000012132022
Q gi|254781179|r 63 GEDGL-----VQ------AILELLEIP-YTHSGILA------SALSMDKMRSKQVVSSCGVPVCPSILVNR 115 (300)
Q Consensus 63 gEdg~-----iq------~~le~~~ip-y~Gs~~~~------~~l~~dK~~~k~~l~~~gIptp~~~~~~~ 115 (300)
++-.. .+ ..++..||. ++.-+... +.....|..+-+.+++.|+| |.++..
T Consensus 77 ~~~~~~~~vd~~g~~~li~AAk~aGVkr~V~lS~lga~~~~~~p~~~~K~~~E~~L~~Sgl~---~TIlRP 144 (319)
T CHL00194 77 SDLNNAYQIDLEGKLALIEAAKAAKVKRFIFFSILNAEQYPQVPLMKIKSDIEEKLKQSGIN---YTIFRL 144 (319)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCC---EEEECC
T ss_conf 88620889889889999999998499889996135666688756778799999999867998---599847
No 333
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=40.09 E-value=28 Score=15.49 Aligned_cols=41 Identities=22% Similarity=0.279 Sum_probs=25.4
Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCCHHHHH-HHHHHHHCCCC
Q ss_conf 688887539989999254884343102356-66432100231
Q gi|254781179|r 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAI-LELLEIPYTHS 82 (300)
Q Consensus 42 ~~~~l~~~~~D~vf~~lhG~~gEdg~iq~~-le~~~ipy~Gs 82 (300)
+...+++..+|+||-=.+...+..|.++.+ -|++|+|++..
T Consensus 100 La~~i~~~~~DLIl~G~~s~D~~~g~v~~~lA~~Lg~P~vt~ 141 (202)
T cd01714 100 LAAAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQITY 141 (202)
T ss_pred HHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCCE
T ss_conf 999998759988999545457997779999999948972248
No 334
>PRK05867 short chain dehydrogenase; Provisional
Probab=40.09 E-value=28 Score=15.49 Aligned_cols=37 Identities=24% Similarity=0.201 Sum_probs=29.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf 28983678712788999999999999987988999615865688
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL 44 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~ 44 (300)
++|+.||.| -=|++++..|.+.|.+|.+.+.+.+...
T Consensus 11 valVTGas~-------GIG~aiA~~la~~Ga~V~i~~r~~~~~~ 47 (253)
T PRK05867 11 RALITGAST-------GIGKRVALAYVEAGAQVAIAARHLDALE 47 (253)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 899979565-------9999999999986999999979889999
No 335
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB; InterPro: IPR014132 This entry describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reduced sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterised polysaccharide deacetylase; the exact function this protein family is unknown..
Probab=40.00 E-value=28 Score=15.48 Aligned_cols=10 Identities=10% Similarity=-0.137 Sum_probs=3.4
Q ss_pred CCCEEECCCE
Q ss_conf 1210000121
Q gi|254781179|r 101 SSCGVPVCPS 110 (300)
Q Consensus 101 ~~~gIptp~~ 110 (300)
++.+|+-+=|
T Consensus 29 ~~~~vk~ATF 38 (198)
T TIGR02764 29 KEEDVKNATF 38 (198)
T ss_pred HHCCCCCCCC
T ss_conf 6558853330
No 336
>PRK07478 short chain dehydrogenase; Provisional
Probab=39.86 E-value=28 Score=15.47 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=28.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 289836787127889999999999999879889996158656
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV 42 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~ 42 (300)
++|+.||.+ -=|+++++.|-+.|.+|.+.+.+++.
T Consensus 8 valVTGas~-------GIG~aiA~~la~~Ga~Vvi~~r~~~~ 42 (254)
T PRK07478 8 VAIITGASS-------GIGRAAAKLFAREGAKVVVGARRQAE 42 (254)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 799958876-------89999999999879999999798899
No 337
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=39.81 E-value=28 Score=15.46 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHH
Q ss_conf 99999999998798899961586568888
Q gi|254781179|r 18 SGKACASALEDAGFKVSQIDVDRSVGLVL 46 (300)
Q Consensus 18 S~~~i~~aL~~~g~~v~~id~~~~~~~~l 46 (300)
.+..|.+.|++.||+|+.+.+.-+....|
T Consensus 31 ~sy~V~kyL~~~GY~ViPVNP~~~~~eiL 59 (140)
T COG1832 31 PSYRVAKYLQQKGYRVIPVNPKLAGEEIL 59 (140)
T ss_pred CHHHHHHHHHHCCCEEEEECCCCCHHHHC
T ss_conf 18899999997899899558552057762
No 338
>PRK08945 short chain dehydrogenase; Provisional
Probab=39.76 E-value=28 Score=15.46 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=27.7
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 289836787127889999999999999879889996158656
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV 42 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~ 42 (300)
++|+.||.| . =|+++++.|-+.|++|++++.+.+-
T Consensus 15 ~~lITGas~---G----IG~aiA~~la~~Ga~Vil~~r~~~~ 49 (245)
T PRK08945 15 IILVTGAGD---G----IGREAALTYARHGATVILLGRTEEK 49 (245)
T ss_pred EEEEECCCH---H----HHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 899948861---8----9999999999879989999698899
No 339
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=39.71 E-value=28 Score=15.45 Aligned_cols=30 Identities=37% Similarity=0.422 Sum_probs=24.6
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 289836787127889999999999999879889996158
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD 39 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~ 39 (300)
|+||-|| ..|.+++-.|.+.|++|.++|-.
T Consensus 3 VvIIGaG---------i~G~stA~~La~~G~~V~vler~ 32 (416)
T PRK00711 3 VVVLGSG---------VVGVTSAWYLARAGHEVTVIDRQ 32 (416)
T ss_pred EEEECCH---------HHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9999944---------99999999999689968999699
No 340
>PRK12829 short chain dehydrogenase; Provisional
Probab=39.69 E-value=28 Score=15.45 Aligned_cols=40 Identities=33% Similarity=0.414 Sum_probs=30.9
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
Q ss_conf 28983678712788999999999999987988999615865688887
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA 47 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~ 47 (300)
++|+.||.+ . =|+++++.|-+.|.+|.+.|.+++......
T Consensus 13 valVTGgs~---G----IG~aiA~~la~~Ga~V~i~~r~~~~~~~~~ 52 (264)
T PRK12829 13 RVLVTGGAS---G----IGRAIAEAFAEAGARVHVCDVSEAALAATA 52 (264)
T ss_pred EEEEECCCC---H----HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 799947376---8----999999999987998999979989999999
No 341
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=39.41 E-value=28 Score=15.42 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=22.8
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 898367871278899999999999998798899961
Q gi|254781179|r 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQID 37 (300)
Q Consensus 2 ~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id 37 (300)
.++.||.. --|..++..|.+.||+|..+|
T Consensus 3 vLVTGg~G-------FIGs~l~~~Ll~~g~~V~~~d 31 (338)
T PRK10675 3 VLVTGGSG-------YIGSHTCVQLLQNGHDVVILD 31 (338)
T ss_pred EEEECCCC-------HHHHHHHHHHHHCCCEEEEEE
T ss_conf 99989876-------799999999997849899998
No 342
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase; InterPro: IPR011904 Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) is a ubiquitous enzyme, found in both prokaryotes and eukaryotes, which catalyses the formation of acetyl-CoA from acetate, coenzyme A (CoA) and ATP as shown below : ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. It is especially important in eukayotic species as it is the only route for the activation of acetate to acetyl-CoA in these organisms (some prokaryotic species can also activate acetate by either acetate kinase/phosphotransacetylase or by ADP-forming acetyl-CoA synthase). Eukaryotes typically have two isoforms of acetyl-CoA synthase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. The crystal structures of a eukaryotic (Q01574 from SWISSPROT, from yeast) and bacterial (Q8ZKF6 from SWISSPROT, from Salmonella) form of this enzyme have been determined , . The yeast enzyme is trimeric, while the bacterial enzyme is monomeric. The trimeric state of the yeast protein may be unique to this organism however, as the residues involved in the trimer interface are poorly conserved in other sequences. Despite differences in the oligomeric state of the two enzyme, the structures of the monomers are almost identical. A large N-terminal domain (~500 residues) containing two parallel beta sheets is followed by a small (~110 residues) C-terminal domain containing a three-stranded beta sheet with helices. The active site occurs at the domain interface, with its contents determining the orientation of the C-terminal domain.; GO: 0003987 acetate-CoA ligase activity, 0016208 AMP binding.
Probab=39.37 E-value=17 Score=16.82 Aligned_cols=11 Identities=45% Similarity=0.860 Sum_probs=8.0
Q ss_pred EEEECCCCHHH
Q ss_conf 89836787127
Q gi|254781179|r 2 AVLMGGISSER 12 (300)
Q Consensus 2 ~vl~GG~s~E~ 12 (300)
.|+|||.|+|.
T Consensus 148 SVVFgGFSa~a 158 (643)
T TIGR02188 148 SVVFGGFSAEA 158 (643)
T ss_pred EEECCCCCHHH
T ss_conf 78725774789
No 343
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; InterPro: IPR006009 The murG gene of Escherichia coli encodes the N-acetylglucosaminyltransferase, UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, responsible for the final step in the formation of the lipid-linked disaccharide-pentapeptide subunit of peptidoglycan. The enzyme is peripherally associated with the inner face of the cytoplasmic membrane. Therefore, the peptidoglycan subunit is completely assembled before it traverses the cytoplasmic membrane .; GO: 0050511 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity, 0019277 UDP-N-acetylgalactosamine biosynthetic process, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=39.36 E-value=13 Score=17.49 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=22.8
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHCC--CEEEEECCC
Q ss_conf 9836787127889999999999999879--889996158
Q gi|254781179|r 3 VLMGGISSEREVSLSSGKACASALEDAG--FKVSQIDVD 39 (300)
Q Consensus 3 vl~GG~s~E~~iSl~S~~~i~~aL~~~g--~~v~~id~~ 39 (300)
+|.||.+.= +-=|.+++++|.+.| ++|.++...
T Consensus 9 ~~~gGGTGG----~fPAlA~a~~l~~~~~~~~v~~lG~~ 43 (368)
T TIGR01133 9 ALAGGGTGG----IFPALAVAEELIKRGPEVEVVWLGTK 43 (368)
T ss_pred EEECCCCCH----HHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 997278302----68999999999974893699985067
No 344
>TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223 This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. In Escherichia coli, the cell division site is determined by the cooperative activity of min operon products MinC, MinD, and MinE . MinD is a membrane-associated ATPase and is a septum site-determining factor through the activation and regulation of MinC and MinE. MinD is also known to undergo a rapid pole-to-pole oscillation movement in vivo as observed by fluorescent microscopy. In plants, chloroplast division requires the dimerisation of stromal MinD . The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.; GO: 0016887 ATPase activity, 0000918 selection of site for barrier septum formation.
Probab=39.26 E-value=29 Score=15.41 Aligned_cols=30 Identities=37% Similarity=0.486 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHCCCEEEEECCC---CCHHHHHH
Q ss_conf 9999999999879889996158---65688887
Q gi|254781179|r 18 SGKACASALEDAGFKVSQIDVD---RSVGLVLA 47 (300)
Q Consensus 18 S~~~i~~aL~~~g~~v~~id~~---~~~~~~l~ 47 (300)
|..++..||.++|++|.+||.| ++|...+-
T Consensus 18 tTANlG~aLA~lG~kVvliD~DiGLRNLD~~lG 50 (272)
T TIGR01968 18 TTANLGTALARLGKKVVLIDADIGLRNLDLLLG 50 (272)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHC
T ss_conf 989999999961982899954757034577742
No 345
>pfam03190 DUF255 Protein of unknown function, DUF255.
Probab=39.26 E-value=24 Score=15.85 Aligned_cols=46 Identities=22% Similarity=0.361 Sum_probs=29.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CEEEEEEEEECCCCEEEEE
Q ss_conf 45865211666554444444577534876-4579999997689839999
Q gi|254781179|r 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWL 260 (300)
Q Consensus 213 ~~~Pa~l~~~~~~~i~~~a~~~~~alg~~-g~~rvDf~~d~~~g~~~~l 260 (300)
+.+|..++.|.+-.|-++-..++.+++.. |+- .-.++++ +|++++-
T Consensus 72 ~Fv~VkVDree~PdiD~~Ym~~~q~~~g~gGWP-L~vfltP-dg~Pf~~ 118 (163)
T pfam03190 72 HFVPIKVDREERPDIDAIYMTAVQALTGSGGWP-LTVFLTP-DGKPFFG 118 (163)
T ss_pred HEEEEEECHHHCHHHHHHHHHHHHHHHCCCCCC-CEEEECC-CCCEEEE
T ss_conf 203334063237557899999999970789975-1246879-9974688
No 346
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=39.15 E-value=29 Score=15.40 Aligned_cols=34 Identities=26% Similarity=0.572 Sum_probs=27.5
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH
Q ss_conf 2898367871278899999999999998798899961586568
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG 43 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~ 43 (300)
|+||-+|. +|-..+..|.+.||+|.+++......
T Consensus 1 VvVIGaGl---------aGL~AA~~L~~~G~~V~VlEa~~r~G 34 (430)
T TIGR03467 1 VVIIGGGL---------AGLSAAVELARAGVRVTLFEARPRLG 34 (430)
T ss_pred CEEECCCH---------HHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 29987868---------99999999987899889994899881
No 347
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=39.03 E-value=29 Score=15.39 Aligned_cols=146 Identities=15% Similarity=0.092 Sum_probs=83.8
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECC------C-CCHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHH
Q ss_conf 28983678712788999999999999987988999615------8-6568888753998999925488434310235666
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV------D-RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~------~-~~~~~~l~~~~~D~vf~~lhG~~gEdg~iq~~le 73 (300)
+++++-|.-.|... .|...+..-..+..-++..+|. + +++..++..+-+-.=+--.-|..|+--.++.+..
T Consensus 23 vv~~~dg~~~~k~~--~s~~rllrli~~~kpDIvAvDnvyEL~~~~~~li~il~~lP~~tkLVQVTg~~g~~~sL~~lAr 100 (652)
T COG2433 23 VVILEDGEIVEKGE--VSLRRLLRLIWSYKPDIVAVDNVYELGADKRDLIRILKRLPEGTKLVQVTGRPGEQESLWELAR 100 (652)
T ss_pred EEEEECCCEEEEHH--HHHHHHHHHHHHCCCCEEEECCHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHH
T ss_conf 99984584874034--1299999999862998798533998730746799999858998608998389887232899999
Q ss_pred HHHHHCCCC-CHHHHHHCCCCHHCCCCCCCCEEECCCEEEE-------------CCCCCHH-------------------
Q ss_conf 432100231-0023320365001000021210000121320-------------2220001-------------------
Q gi|254781179|r 74 LLEIPYTHS-GILASALSMDKMRSKQVVSSCGVPVCPSILV-------------NRFTMDS------------------- 120 (300)
Q Consensus 74 ~~~ipy~Gs-~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~-------------~~~~~~~------------------- 120 (300)
.+|+|+.|. +|..-+ ..-..|+..|+-|+-+.+- .++-|..
T Consensus 101 r~G~~~~~~~~P~eeA------~~~A~LA~~GvG~ev~~fEdeT~I~VsR~RS~g~GGwSq~RY~R~vh~av~~~~reIe 174 (652)
T COG2433 101 RHGIRVNGKLNPYEEA------YACARLASKGVGTEVSVFEDETKITVSRGRSLGPGGWSQNRYRRRVHGAVKRVVREIE 174 (652)
T ss_pred HHCCCCCCCCCHHHHH------HHHHHHHHCCCCCEEEEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 8498779988858899------9999998658986357630036999974355899876477898998899999999999
Q ss_pred ----HHHCCCCEEEEECCCCCCCCEEEECC-HHHHHHHH
Q ss_conf ----22105862564324776421143259-89999988
Q gi|254781179|r 121 ----QHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLDL 154 (300)
Q Consensus 121 ----~~~~~~P~ivKP~~ggsS~Gv~~v~~-~~el~~~~ 154 (300)
.+.+.|-+.++-..||-|.+.+.|.. .+.+...+
T Consensus 175 e~L~~agldyDl~vr~~~gGi~~a~F~VyA~re~l~g~V 213 (652)
T COG2433 175 EKLDEAGLDYDLEVRESYGGISRAEFTVYAPRERLPGVV 213 (652)
T ss_pred HHHHHCCCCCEEEEEECCCCCCEEEEEEECCHHHHHHHC
T ss_conf 999865998236775203762206999975744402213
No 348
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=38.87 E-value=29 Score=15.37 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=24.5
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEE
Q ss_conf 99999999987988999615865688887539989999
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN 56 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~ 56 (300)
...+...|.+.||+|............+...+||+|+-
T Consensus 16 r~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlvl~ 53 (469)
T PRK10923 16 RWVLERALAGAGLTCTTFENGNEVLEALASKTPDVLLS 53 (469)
T ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEE
T ss_conf 99999999877998999899999999986699999987
No 349
>PRK07576 short chain dehydrogenase; Provisional
Probab=38.83 E-value=29 Score=15.37 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=27.8
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28983678712788999999999999987988999615865
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS 41 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~ 41 (300)
++|+.||.+ -=|+++++.|.+.|.+|.+.+.+++
T Consensus 10 ~alVTGgs~-------GIG~aia~~la~~Ga~V~i~~r~~~ 43 (260)
T PRK07576 10 NVFVVGGTS-------GINLGIAQAFARAGANVAVASRSQE 43 (260)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 899958961-------9999999999987999999979889
No 350
>TIGR02049 gshA_ferroox glutamate--cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria . It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase..
Probab=38.70 E-value=25 Score=15.80 Aligned_cols=116 Identities=15% Similarity=0.167 Sum_probs=55.9
Q ss_pred CC-EEEEECCCCCCCCEEEECCHHHHHHH-------HHHHCCCCCCCCCCCCCCCCCCEE-E-EEECCCCCCCEEEECCC
Q ss_conf 86-25643247764211432598999998-------863003668854223335788457-8-87314444200220255
Q gi|254781179|r 126 PP-YVIKPLKGGSSLGIIVIKKDQSIPLD-------LLQSSSWNHGDQLLIEQYVDGIEL-T-CGVMGDASLDVTEIAVP 195 (300)
Q Consensus 126 ~P-~ivKP~~ggsS~Gv~~v~~~~el~~~-------~~~~~~~~~~~~vlVEefI~G~E~-~-v~Vl~~~~~~~~ei~~~ 195 (300)
-| +|||...|-=+.||.-+++.+|...- +++.+.--.-+.|+|||=|.-.|- . -+|...-+..+... .
T Consensus 263 ~Pyv~vKAdaGTYGMGimTa~sgeE~l~LNrK~R~kM~k~KEGl~vs~ViiQEGV~T~e~~~q~avAEPvvYmig~~--v 340 (436)
T TIGR02049 263 KPYVIVKADAGTYGMGIMTAKSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYTFEKLNQEAVAEPVVYMIGRT--V 340 (436)
T ss_pred CCEEEEEECCCCCCCCEEEEECHHHHHCCCCCCCCCCCEEECCCCCCCEEEECCCCHHHHCCCCCCCCCEEEECCCE--E
T ss_conf 87589970788745505884263785425300013443112570105567847844065304546556402331776--7
Q ss_pred CCCCC------CCCCCCCCCCCCCCCCCC--C---HHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 43333------110000112222458652--1---1666554444444577534876457
Q gi|254781179|r 196 KSDFY------SYELKYSSLNSTHVLPAK--I---PLDIYKEVQRLAFLAHQAIGCRGIS 244 (300)
Q Consensus 196 ~~~~~------dy~~Ky~~~~~~~~~Pa~--l---~~~~~~~i~~~a~~~~~alg~~g~~ 244 (300)
-++|| |-++.-+..+ .+..|-. + .-+-.++.-+.++++|+...-.++-
T Consensus 341 ~GgfYRvh~~rg~denLNA~g-~~F~pls~~iPtGnGdnsqeaPeackrvfeq~~s~~lP 399 (436)
T TIGR02049 341 VGGFYRVHTGRGVDENLNAPG-MHFVPLSFSIPTGNGDNSQEAPEACKRVFEQFDSLSLP 399 (436)
T ss_pred EEEEEEECCCCCCCCCCCCCC-CEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 755787527788753678988-65503776666788754200158899998877532787
No 351
>PRK10693 response regulator of RpoS; Provisional
Probab=38.62 E-value=29 Score=15.35 Aligned_cols=40 Identities=15% Similarity=0.016 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEEC
Q ss_conf 9999999999879889996158656888875399899992
Q gi|254781179|r 18 SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV 57 (300)
Q Consensus 18 S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~ 57 (300)
....+...|++.||+|....-.......+...+||+|+-=
T Consensus 19 ~r~~l~~~L~~~G~~V~~A~nG~eAl~~l~~~~pDLIi~D 58 (337)
T PRK10693 19 FRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICD 58 (337)
T ss_pred HHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEE
T ss_conf 9999999999789999998999999999865899999996
No 352
>PRK05866 short chain dehydrogenase; Provisional
Probab=38.56 E-value=29 Score=15.34 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=29.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf 289836787127889999999999999879889996158656888
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV 45 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~ 45 (300)
++++.||.|. =|++++..|-+.|.+|.+++-+.+....
T Consensus 42 vaLITGassG-------IG~aiA~~la~~Ga~Vvl~~R~~~~l~~ 79 (290)
T PRK05866 42 RILLTGASSG-------IGEAAAEKFARRGATVVAVARRKDLLDA 79 (290)
T ss_pred EEEECCCCCH-------HHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 8999081309-------9999999999869989999899999999
No 353
>PRK06753 hypothetical protein; Provisional
Probab=38.46 E-value=29 Score=15.33 Aligned_cols=32 Identities=28% Similarity=0.525 Sum_probs=25.4
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28983678712788999999999999987988999615865
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS 41 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~ 41 (300)
|+|+-||+ +|-..+.+|.+.|++|.+++-...
T Consensus 3 V~IVGaGi---------aGL~~A~~L~~~G~~v~V~Er~~~ 34 (373)
T PRK06753 3 IAIIGAGI---------GGLTAAALLQEQGHTVKVFEKNES 34 (373)
T ss_pred EEEECCCH---------HHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 99999458---------999999999977999999888999
No 354
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain; InterPro: IPR012821 Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by IPR012822 from INTERPRO..
Probab=38.25 E-value=12 Score=17.77 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHH-HHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEE
Q ss_conf 4310235666432-1002310023320365001000021210000121320
Q gi|254781179|r 64 EDGLVQAILELLE-IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113 (300)
Q Consensus 64 Edg~iq~~le~~~-ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~ 113 (300)
+|-.+..+++.++ |-+-+.=....+-+.+=..+++++++++||.|+=.+.
T Consensus 14 d~~gLA~f~~~L~si~~~~~~gfGi~TGR~v~~A~~~~~k~~lP~Pdvl~a 64 (241)
T TIGR02471 14 DDEGLAEFVELLRSITSGKAVGFGIATGRSVESALSVLKKLNLPSPDVLIA 64 (241)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHH
T ss_conf 167899999999886505430232013547789999999707978602211
No 355
>PRK07060 short chain dehydrogenase; Provisional
Probab=38.00 E-value=30 Score=15.28 Aligned_cols=41 Identities=29% Similarity=0.331 Sum_probs=30.9
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH
Q ss_conf 289836787127889999999999999879889996158656888875
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH 48 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~ 48 (300)
++|+.||.+ -=|+++++.|.+.|++|..+|.++.-...+..
T Consensus 11 ~~lVTG~~~-------GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~ 51 (245)
T PRK07060 11 SVLVTGASS-------GIGRACAVALAARGARVVAAARNQADLDRLAG 51 (245)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
T ss_conf 899947776-------89999999999879999999799899999998
No 356
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase; InterPro: IPR012733 4-hydroxybenzoate 3-monooxygenase is a flavoprotein that converts its substrate to 3,4-dihydroxybenzoate, which subsequently enters the beta-ketioadipate pathway of aromatic degradation, using molecular oxygen and NADPH as shown below . 4-hydroxybenzoate + NADPH + O(2) = 3,4-dihydroxybenzoate + NADP(+) + H(2)O 4-hydroxybenzoate is an intermediate in the degradation of lignin and other aromatic plant compounds, and this enzyme is found extensively in soil bacteria. This enzyme is a homodimer where each subunit is composed of three distinct domains: an N-terminal flavin-binding domain with a beta-alpha-beta fold, a small substrate-binding domain composed of a single alpha helix and beta-sheet, and a C-terminal helical domain . The active site is found at the interface of all three domains. Catalysis occurs by a two-step reaction. In the first step, flavin is reduced by NADPH. Subsequently, the reduced flavin is oxygenated to a hydroperoxide which transfers the hydroxyl group to the substrate, forming 3,4-dihydroxybenzoate.; GO: 0018659 4-hydroxybenzoate 3-monooxygenase activity, 0050660 FAD binding, 0043639 benzoate catabolic process.
Probab=38.00 E-value=30 Score=15.28 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=25.9
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 28983678712788999999999999987988999615
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV 38 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~ 38 (300)
||||.|||| |.-+-+=|.+.|.+.++++-
T Consensus 5 VaIiG~GPs---------GLLLGQLLh~~GId~viLEr 33 (393)
T TIGR02360 5 VAIIGAGPS---------GLLLGQLLHKAGIDTVILER 33 (393)
T ss_pred EEEECCCHH---------HHHHHHHHHHCCCCEEEEEC
T ss_conf 999757735---------78999999866985899723
No 357
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=37.89 E-value=29 Score=15.31 Aligned_cols=125 Identities=15% Similarity=0.150 Sum_probs=66.3
Q ss_pred HHHHHHHCCCEEEEECCCCCHHHHHHHCCC-CEEEECCCCCCCCCCHHHHHH-HHHHHHCCCCCHHHHHHCCCCHHCCCC
Q ss_conf 999999879889996158656888875399-899992548843431023566-643210023100233203650010000
Q gi|254781179|r 22 CASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGNFGEDGLVQAIL-ELLEIPYTHSGILASALSMDKMRSKQV 99 (300)
Q Consensus 22 i~~aL~~~g~~v~~id~~~~~~~~l~~~~~-D~vf~~lhG~~gEdg~iq~~l-e~~~ipy~Gs~~~~~~l~~dK~~~k~~ 99 (300)
+-+.|++.|.+|.--|..+-+ .++...+| ..|.|++|=.-- .|..++ |.++.+.. .++.....+--|++.+++
T Consensus 119 ln~~Le~~G~ev~ETDLGE~I-lQl~~~~PsHIV~PAlH~~re---qIa~if~ekl~~~~~-~~~eel~~~aR~~lR~kf 193 (459)
T COG1139 119 LNHYLEEKGIEVWETDLGELI-LQLAGEPPSHIVAPALHKNRE---QIAEIFKEKLGYEGE-DTPEELTAAAREFLREKF 193 (459)
T ss_pred HHHHHHHCCCEEEECCHHHHH-HHHCCCCCCCEECCCCCCCHH---HHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHHHH
T ss_conf 689998749847872588999-986389986334212036999---999999986389889-998999999999999987
Q ss_pred CC-CCEEECCCEEEECCCCCHH---HHHCCCCEEEEECCCCCCCCE-EEECCHHHHHH
Q ss_conf 21-2100001213202220001---221058625643247764211-43259899999
Q gi|254781179|r 100 VS-SCGVPVCPSILVNRFTMDS---QHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPL 152 (300)
Q Consensus 100 l~-~~gIptp~~~~~~~~~~~~---~~~~~~P~ivKP~~ggsS~Gv-~~v~~~~el~~ 152 (300)
++ +.||.=+++...+.+.... +-....-..+-|++= +=.|| .+|-+.+++..
T Consensus 194 l~AdvGITGaNfa~AetGsv~LVeNEGN~Rm~ttlP~tHI-av~GiEKivps~eda~~ 250 (459)
T COG1139 194 LKADVGITGANFAVAETGSVCLVENEGNGRMSTTLPPTHI-AVMGIEKIVPTLEDAAV 250 (459)
T ss_pred HHCCCCCCCCCEEEECCCCEEEEEECCCCEECCCCCCEEE-EEEEHHHHCCCHHHHHH
T ss_conf 6236566563225634674899961687400134787458-98307763476888889
No 358
>PRK06949 short chain dehydrogenase; Provisional
Probab=37.82 E-value=30 Score=15.27 Aligned_cols=34 Identities=29% Similarity=0.319 Sum_probs=27.4
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28983678712788999999999999987988999615865
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS 41 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~ 41 (300)
++|+.||.+ . =|++++..|-+.|.+|.+.+.+.+
T Consensus 11 valVTGas~---G----IG~aiA~~la~~Ga~V~i~~~~~~ 44 (258)
T PRK06949 11 VALVTGASS---G----LGQRFAQVLSQAGAKVVLASRRVE 44 (258)
T ss_pred EEEEECCCC---H----HHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 899958577---9----999999999987999999969889
No 359
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=37.77 E-value=30 Score=15.26 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=18.4
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 2898367871278899999999999998798899961
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID 37 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id 37 (300)
|||+-.|++ |.+++..|.+.||+|.+.+
T Consensus 435 VAVIGsGPA---------GLs~A~~Lar~G~~VTVfE 462 (993)
T PRK12775 435 VAIVGSGPA---------GLAAAADLTRYGVETTVYE 462 (993)
T ss_pred EEEECCCHH---------HHHHHHHHHHCCCCEEEEE
T ss_conf 899783788---------9999999997799648971
No 360
>PRK06500 short chain dehydrogenase; Provisional
Probab=37.68 E-value=30 Score=15.25 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=28.9
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH
Q ss_conf 2898367871278899999999999998798899961586568
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG 43 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~ 43 (300)
++|+.||.+ -=|+++++.|.+.|.+|.+.+.+++..
T Consensus 8 ~~lITGas~-------GIG~aiA~~la~~Ga~V~i~~r~~~~l 43 (249)
T PRK06500 8 TALITGGTS-------GIGLETARQFAAEGARVAITGRDAATL 43 (249)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 899937687-------899999999998799999996998999
No 361
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=37.52 E-value=30 Score=15.24 Aligned_cols=37 Identities=30% Similarity=0.306 Sum_probs=24.8
Q ss_pred CCE-EEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 645-7999999768983999974726588822389999998399989999999
Q gi|254781179|r 241 RGI-SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 (300)
Q Consensus 241 ~g~-~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~~i 292 (300)
.|+ .|-=|++|+ +|.+-...+|+.| .|=+..++|+.+
T Consensus 119 ~G~a~RatFiIDp-~g~Ir~~~v~~~~--------------vGRnv~EiLR~l 156 (194)
T PTZ00137 119 DGFSLRASVLIDK-AGVVQHLAVNDLG--------------IGRSVDETLRIF 156 (194)
T ss_pred CCCEEEEEEEECC-CCEEEEEEECCCC--------------CCCCHHHHHHHH
T ss_conf 8821678999999-9979999977987--------------684989999999
No 362
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.51 E-value=30 Score=15.23 Aligned_cols=72 Identities=22% Similarity=0.219 Sum_probs=46.0
Q ss_pred ECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 36787127889999999999999879889996158656888875399899992548843431023566643210023
Q gi|254781179|r 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 (300)
Q Consensus 5 ~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~lhG~~gEdg~iq~~le~~~ipy~G 81 (300)
.||+|.=. --.+=+..|..+..+.||.+.+...++. ...+...+.|-++.. .....|-.++. |...|+|++-
T Consensus 13 ~~~~~~~~-FF~e~~~~ve~~A~~~gy~liL~~~~~~-~~~l~~~~VDGvIl~--~~~~~d~~i~~-L~~~~iP~V~ 84 (269)
T cd06287 13 AGGPSRLG-FMMEVAAAAAESALERGLALCLVPPHEA-DSPLDALDIDGAILV--EPMADDPQVAR-LRQRGIPVVS 84 (269)
T ss_pred CCCCCCCC-HHHHHHHHHHHHHHHCCCEEEEECCCCC-HHHHHHCCCCEEEEE--CCCCCCHHHHH-HHHCCCCEEE
T ss_conf 47976464-2999999999999986998999479986-556875879989990--37889779999-9976999999
No 363
>PRK13405 bchH magnesium chelatase subunit H; Provisional
Probab=37.40 E-value=30 Score=15.22 Aligned_cols=64 Identities=17% Similarity=0.254 Sum_probs=40.2
Q ss_pred HHHHHHHHHHCCCEEEEECCC-----CCHHHHHH---HCCCCEEEECC-----CCCCCCCC-HHHHHHHHHHHHCCCC
Q ss_conf 999999999879889996158-----65688887---53998999925-----48843431-0235666432100231
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVD-----RSVGLVLA---HLKPDLAFNVL-----HGNFGEDG-LVQAILELLEIPYTHS 82 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~-----~~~~~~l~---~~~~D~vf~~l-----hG~~gEdg-~iq~~le~~~ipy~Gs 82 (300)
-.++..+|++.|..|+.+... ......+. ..++|+++|+. .|+-+.|. .-+.+|..+||||.-.
T Consensus 265 idalI~alE~~Gl~viPvF~~gld~~~ai~~~f~~~~~~~vDalvs~tgFsLvggpa~~d~~~a~~~L~~LdVP~l~a 342 (1207)
T PRK13405 265 YDGVIEAFEAKGLRVVPAFASGLDGRPAIERYFMKDGRPTVDAVVSLTGFSLVGGPAYNDSAAAEEVLARLDVPYLAA 342 (1207)
T ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCEECCCCCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 999999999879918899867878717799998626898511898603110356767677424566665127751676
No 364
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=37.39 E-value=30 Score=15.22 Aligned_cols=10 Identities=10% Similarity=0.467 Sum_probs=3.7
Q ss_pred CCHHHHHHHH
Q ss_conf 9989999999
Q gi|254781179|r 283 YSFRELLLWM 292 (300)
Q Consensus 283 ~s~~~li~~i 292 (300)
++|+||+.+|
T Consensus 335 FdleDfl~Ql 344 (439)
T TIGR00959 335 FDLEDFLEQL 344 (439)
T ss_pred CCHHHHHHHH
T ss_conf 8989999999
No 365
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=37.33 E-value=31 Score=15.22 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=24.8
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28983678712788999999999999987988999615865
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS 41 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~ 41 (300)
|+|+-||+ +|...+..|.+.|++|.+++....
T Consensus 4 V~IvGaG~---------aGl~lA~~L~~~Gi~v~V~Er~~~ 35 (349)
T pfam01494 4 VLIVGGGP---------AGLMLALLLARAGVRVVLVERHAT 35 (349)
T ss_pred EEEECCCH---------HHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 89999288---------999999999877998999928999
No 366
>KOG1476 consensus
Probab=37.33 E-value=23 Score=15.97 Aligned_cols=34 Identities=32% Similarity=0.451 Sum_probs=28.1
Q ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 9989999254884343102356664321002310
Q gi|254781179|r 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 (300)
Q Consensus 50 ~~D~vf~~lhG~~gEdg~iq~~le~~~ipy~Gs~ 83 (300)
=|++.|++++...|..-.++.+|+.-|+||+.-.
T Consensus 115 V~nLhWIVVEd~~~~~p~v~~~L~rtgl~ythl~ 148 (330)
T KOG1476 115 VPNLHWIVVEDGEGTTPEVSGILRRTGLPYTHLV 148 (330)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEE
T ss_conf 6871699982687777778999987199537885
No 367
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative; InterPro: IPR010088 This entry represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulphate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation..
Probab=37.08 E-value=31 Score=15.19 Aligned_cols=57 Identities=21% Similarity=0.313 Sum_probs=35.4
Q ss_pred HHHHHHHHHHCCCEEEEEC--CCCCHHHHHHHCCCCEEEECCCCCCC-CCCH--------HHHHHHHHHHH
Q ss_conf 9999999998798899961--58656888875399899992548843-4310--------23566643210
Q gi|254781179|r 19 GKACASALEDAGFKVSQID--VDRSVGLVLAHLKPDLAFNVLHGNFG-EDGL--------VQAILELLEIP 78 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id--~~~~~~~~l~~~~~D~vf~~lhG~~g-Edg~--------iq~~le~~~ip 78 (300)
|..|-+.|++.||+|..|. +..-...-+..+..|++|- |.|- |-|. |..++++.|-|
T Consensus 18 A~~I~~~l~~~G~eVDW~~~r~~~La~~pldPe~ydL~~L---GtwT~~~GrTP~e~KdFiaEl~~liGKP 85 (145)
T TIGR01754 18 ADIIRDILEKDGHEVDWVEFRISTLADAPLDPEDYDLYLL---GTWTVERGRTPDEMKDFIAELAVLIGKP 85 (145)
T ss_pred HHHHHHHHHHCCCEEEEEEECCHHHHCCCCCCCCCCEEEE---EEEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9999999984797767664000464246789986315774---3122357899666899999999983699
No 368
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=36.84 E-value=31 Score=15.17 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=29.7
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEE
Q ss_conf 99999999987988999615865688887539989999
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN 56 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~ 56 (300)
...++..|+++|.++..+-.|+-....+...+||.++.
T Consensus 12 T~ni~~~l~~~g~~~~v~~~d~~~~~~i~~~~pd~IiL 49 (195)
T PRK07649 12 TYNLVQYLGELGQELVVKRNDEVTISDIENMKPDFLMI 49 (195)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEE
T ss_conf 99999999978997999889968999998419898998
No 369
>KOG3445 consensus
Probab=36.76 E-value=21 Score=16.27 Aligned_cols=48 Identities=23% Similarity=0.245 Sum_probs=22.0
Q ss_pred EEEE-CCCCCCCCEEEECCHHHHHHHHHHHC------CC-CCCCCCCCCCCCCCCEE
Q ss_conf 5643-24776421143259899999886300------36-68854223335788457
Q gi|254781179|r 129 VIKP-LKGGSSLGIIVIKKDQSIPLDLLQSS------SW-NHGDQLLIEQYVDGIEL 177 (300)
Q Consensus 129 ivKP-~~ggsS~Gv~~v~~~~el~~~~~~~~------~~-~~~~~vlVEefI~G~E~ 177 (300)
.++= .+||||.|+...- ..+|.+...+.- .. ....+.|.-||..|+|-
T Consensus 27 t~sfCnwggSSrGmR~Fl-e~~L~~~a~enP~v~i~v~~rrg~hP~lraeY~NGre~ 82 (145)
T KOG3445 27 TVSFCNWGGSSRGMREFL-ESELPDLARENPGVVIYVEPRRGQHPLLRAEYLNGRER 82 (145)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHHHHHHCCCEEEEEECCCCCCCEEEEEECCCCEE
T ss_conf 999755898538799999-98879988538986999831689985588886288368
No 370
>PRK09271 flavodoxin; Provisional
Probab=36.75 E-value=31 Score=15.16 Aligned_cols=63 Identities=19% Similarity=0.250 Sum_probs=38.2
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH--HHHHCCCCEEEECCCCCCC-CCCHHH
Q ss_conf 28983678712788999999999999987988999615865688--8875399899992548843-431023
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--VLAHLKPDLAFNVLHGNFG-EDGLVQ 69 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~--~l~~~~~D~vf~~lhG~~g-Edg~iq 69 (300)
|.|+|+-.|.--+ .-|..|.+.|++.|++|..++.+..... ...-...|+++. |.+. .||.+|
T Consensus 3 vlIvYaS~TGNTE---~vA~~I~~~l~~~G~eV~~~e~d~~~~~~~~~d~~~yDl~ll---G~yTwgdG~lP 68 (160)
T PRK09271 3 ILLAYASLSGNTR---EVARMIAARCEEAGHAVTWVETDLQTLAQAPLDPEEYDLFLL---GTWTDNAGRTP 68 (160)
T ss_pred EEEEEECCCCCHH---HHHHHHHHHHHHCCCEEEEEEECCHHHHHCCCCCCCCCEEEE---ECCCCCCCCCC
T ss_conf 8999984887689---999999999997698237987010232203356111888999---65704899896
No 371
>TIGR00273 TIGR00273 iron-sulfur cluster binding protein; InterPro: IPR004452 Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulphur clusters..
Probab=36.74 E-value=31 Score=15.16 Aligned_cols=91 Identities=21% Similarity=0.233 Sum_probs=59.0
Q ss_pred HHHHHCCCEEEEECCCCCHHHHHHHCCC-CEEEECCCCCCCCCCHHHHHHH-HHHHHCCCCCHHHHHHCCCCHHCCCCCC
Q ss_conf 9999879889996158656888875399-8999925488434310235666-4321002310023320365001000021
Q gi|254781179|r 24 SALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGNFGEDGLVQAILE-LLEIPYTHSGILASALSMDKMRSKQVVS 101 (300)
Q Consensus 24 ~aL~~~g~~v~~id~~~~~~~~l~~~~~-D~vf~~lhG~~gEdg~iq~~le-~~~ipy~Gs~~~~~~l~~dK~~~k~~l~ 101 (300)
.-|++.|.+|.-.|-.+-..++..+.+| ++|.|+||=.- -.|-.+|+ .+|..|+= .|+....-.=|..=|++++
T Consensus 107 ~~L~~~G~~v~ETDLGElI~Q~~d~d~P~H~VvPAlHk~~---~qig~il~Erl~~~~~E-~pE~L~~~~R~~~R~~Fl~ 182 (450)
T TIGR00273 107 EVLEKKGIEVVETDLGELILQLDDNDPPSHIVVPALHKNR---KQIGEILKERLGYEGEE-EPEKLALIARKFMRKKFLS 182 (450)
T ss_pred HHHHHCCCEEEEECCCEEEEEEECCCCCEEEEECCCCCCH---HHHHHHHHHHCCCCCCC-CHHHHHHHHHHHHHHHHHC
T ss_conf 8887659779980043078877458884278855722786---89888998745899888-8789999999986266511
Q ss_pred -CCEEECCCEEEECCCCC
Q ss_conf -21000012132022200
Q gi|254781179|r 102 -SCGVPVCPSILVNRFTM 118 (300)
Q Consensus 102 -~~gIptp~~~~~~~~~~ 118 (300)
+.||.=.++.+.+.+..
T Consensus 183 a~~GisGcNfa~A~tG~i 200 (450)
T TIGR00273 183 ADIGISGCNFAIAETGSI 200 (450)
T ss_pred CCCCEEECCEEEECCCEE
T ss_conf 345300002046557518
No 372
>cd01414 SAICAR_synt_Sc non-metazoan 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. Eukaryotic, bacterial, and archaeal group of SAICAR synthetases represented by the Saccharomyces cerevisiae (Sc) enzyme, mostly absent in metazoans. SAICAR synthetase catalyzes the seventh step of the de novo biosynthesis of purine nucleotides (also reported as eighth step). It converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=36.64 E-value=31 Score=15.15 Aligned_cols=45 Identities=22% Similarity=0.356 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHHHHHHHCC----CCCEEEEEEEE----ECCCCEEEEE-EECC
Q ss_conf 116665544444445775348----76457999999----7689839999-7472
Q gi|254781179|r 219 IPLDIYKEVQRLAFLAHQAIG----CRGISRSDFLF----DPLSRKVFWL-EINV 264 (300)
Q Consensus 219 l~~~~~~~i~~~a~~~~~alg----~~g~~rvDf~~----d~~~g~~~~l-EvN~ 264 (300)
++.+..++++++++++++.+. -+|+.-+|+.+ +. +|+++++ ||-|
T Consensus 160 ~~~~~~~~i~~~sl~i~~~~~~~~~~~GiiLvDtK~EFG~~~-~g~iiL~DEi~T 213 (279)
T cd01414 160 IGAELADELRELALALYERAAEYAAKRGLILADTKFEFGLDE-NGEIILIDEVLT 213 (279)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECC-CCCEEEEEECCC
T ss_conf 699999999999999999999999988988993024520658-998899851379
No 373
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase; InterPro: IPR011294 This entry represents a subfamily of the short chain dehydrogenases. Characterised members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polymers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.; GO: 0003858 3-hydroxybutyrate dehydrogenase activity.
Probab=36.53 E-value=31 Score=15.14 Aligned_cols=41 Identities=32% Similarity=0.314 Sum_probs=28.5
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC--CCHHHHHHH
Q ss_conf 289836787127889999999999999879889996158--656888875
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--RSVGLVLAH 48 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~--~~~~~~l~~ 48 (300)
++|+.|=-| .| |.+|+..|-+.|++|...|.+ ++....+..
T Consensus 3 talVTGaaS---GI----G~~iA~~LA~aGa~v~~~d~~~~~~~~~~~~~ 45 (258)
T TIGR01963 3 TALVTGAAS---GI----GLAIAKALAAAGANVVVNDLGEADEGAEAAAK 45 (258)
T ss_pred EEEEECCCH---HH----HHHHHHHHHHCCCEEEEECCCCHHHHHHHHHH
T ss_conf 899965871---67----89999999872988998467887899999999
No 374
>PRK08703 short chain dehydrogenase; Provisional
Probab=36.40 E-value=32 Score=15.12 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=28.4
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 289836787127889999999999999879889996158656
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV 42 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~ 42 (300)
++|+.||.| -=|+++++.|-+.|++|.+++-+.+-
T Consensus 8 ~~lITGas~-------GIG~aiA~~la~~Ga~V~l~~r~~~~ 42 (239)
T PRK08703 8 TILVTGASQ-------GLGEQVAKAYAAAGATVILVARHQKK 42 (239)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 899948862-------89999999999879989999798889
No 375
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=36.39 E-value=32 Score=15.12 Aligned_cols=50 Identities=22% Similarity=0.171 Sum_probs=28.9
Q ss_pred E-EEEEEEEECCCCEEEEEEECC-CC-CCCHHHHHHHHHHHC-C----CC-HHHHHHHHHH
Q ss_conf 5-799999976898399997472-65-888223899999983-9----99-8999999999
Q gi|254781179|r 243 I-SRSDFLFDPLSRKVFWLEINV-QP-GMTPVSIFPEMAAYA-G----YS-FRELLLWMVE 294 (300)
Q Consensus 243 ~-~rvDf~~d~~~g~~~~lEvN~-~P-Glt~~s~~p~~~~~~-G----~s-~~~li~~ii~ 294 (300)
+ +|.||.+|. +| ++++|.|. .| .+...+.+-..|... | .+ .++|.+.+++
T Consensus 313 isGRfDFa~d~-~g-lK~~EYNaDSpS~l~Eag~iQ~~Wae~~g~~~g~~~g~~L~~~L~~ 371 (619)
T PRK10507 313 ITGRMDFCMDE-RG-LKVYEYNADSASCHTEAGLILEKWAEQGYKGNGFNPAEGLINELAG 371 (619)
T ss_pred EEEEEEEEECC-CC-CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 01456667769-88-5899955898157776489999999961876576928999999999
No 376
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=36.11 E-value=32 Score=15.09 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=13.9
Q ss_pred HHHHHHHHHHCCCEEEEE
Q ss_conf 999999999879889996
Q gi|254781179|r 19 GKACASALEDAGFKVSQI 36 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~i 36 (300)
|-+|+.+|+++|.++..+
T Consensus 39 GiNVA~~l~~LG~~~~a~ 56 (309)
T PRK13508 39 GLNVTRVLSEFGENVLAT 56 (309)
T ss_pred HHHHHHHHHHCCCCEEEE
T ss_conf 999999999859986999
No 377
>PRK06398 aldose dehydrogenase; Validated
Probab=35.98 E-value=32 Score=15.08 Aligned_cols=33 Identities=33% Similarity=0.440 Sum_probs=27.6
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
++|+.||.| -=|+++++.|.+.|.+|..++.++
T Consensus 8 valVTGgs~-------GIG~aia~~la~~Ga~V~~~~~~~ 40 (256)
T PRK06398 8 VVIVTGGSS-------GIGLAIVSRFVDEGSKVVSISRSE 40 (256)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 899968787-------899999999998699999994875
No 378
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=35.78 E-value=32 Score=15.06 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=27.2
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
+||+.||.+ -=|+++++.|.+.|++|+..+.+.
T Consensus 4 valITGas~-------GIG~a~a~~la~~G~~Vv~~~~~~ 36 (245)
T PRK12824 4 IALVTGAKR-------GIGSAIARELLADGYRVIATYFGN 36 (245)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 999947888-------899999999998799899995880
No 379
>PRK06172 short chain dehydrogenase; Provisional
Probab=35.51 E-value=33 Score=15.03 Aligned_cols=48 Identities=29% Similarity=0.410 Sum_probs=33.1
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH----HHHHCCCCEEE
Q ss_conf 28983678712788999999999999987988999615865688----88753998999
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----VLAHLKPDLAF 55 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~----~l~~~~~D~vf 55 (300)
++|+.||.| -=|++++..|-+.|.+|.+.|.+.+... .+.....+..+
T Consensus 9 valVTGas~-------GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~g~~~~~ 60 (253)
T PRK06172 9 VALVTGGAA-------GIGRATAIAFAREGAKVVVADRDAAGGEETVALIREAGGEALF 60 (253)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEE
T ss_conf 899937576-------8999999999987998999979889999999999964993799
No 380
>PRK06847 hypothetical protein; Provisional
Probab=35.43 E-value=33 Score=15.03 Aligned_cols=32 Identities=34% Similarity=0.619 Sum_probs=25.3
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28983678712788999999999999987988999615865
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS 41 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~ 41 (300)
|+|+-||+ +|...+..|.+.|++|.+++.+..
T Consensus 7 V~IVGaG~---------aGL~lA~~L~~~Gi~v~V~E~~~~ 38 (375)
T PRK06847 7 VLIVGGGI---------GGMSAAIALRKAGISVDLVEIDPE 38 (375)
T ss_pred EEEECCCH---------HHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 99999668---------999999999967999999908999
No 381
>TIGR01491 HAD-SF-IB-PSPlk Phosphoserine phosphatase-like hydrolase, archaeal; InterPro: IPR006386 This group of sequences belong to the IB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases. As there are no known archaeal phosphoserine phosphatases, it seems likely that this group of sequences represent the archaeal branch of PSPase..
Probab=35.30 E-value=21 Score=16.24 Aligned_cols=66 Identities=24% Similarity=0.315 Sum_probs=34.5
Q ss_pred HHHHHH-HHHHHHHHHHHCCCEEEEECCCCC-HHHH-HHHCCCCEEE-ECCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 788999-999999999987988999615865-6888-8753998999-9254884343102356664321002310
Q gi|254781179|r 12 REVSLS-SGKACASALEDAGFKVSQIDVDRS-VGLV-LAHLKPDLAF-NVLHGNFGEDGLVQAILELLEIPYTHSG 83 (300)
Q Consensus 12 ~~iSl~-S~~~i~~aL~~~g~~v~~id~~~~-~~~~-l~~~~~D~vf-~~lhG~~gEdg~iq~~le~~~ipy~Gs~ 83 (300)
+||+|. .|..+.+-|++.|+.+-+|-..=. +..+ -++.++|.+. |.| .+.|+|.||.- ++|-++.+
T Consensus 79 ~ei~lrd~a~E~vr~Lke~Gl~~a~vsgGi~~L~~~vae~~~~Dy~~sN~l--~fde~Gf~~p~----g~~rV~~d 148 (203)
T TIGR01491 79 KEIKLRDEAEEVVRMLKEKGLKTAVVSGGISLLVKKVAEKLNADYVLSNEL--VFDEKGFVQPD----GIVRVIVD 148 (203)
T ss_pred HCCCCCCCHHHHHHHHHHCCCEEEEHHCCHHHHHHHHHHHCCCCHHHHHHH--HCCCCCEECCC----CEEEEEEC
T ss_conf 125433106899999975675786412018899999997608055764033--01588678887----16998454
No 382
>pfam03358 FMN_red NADPH-dependent FMN reductase.
Probab=35.23 E-value=33 Score=15.01 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=30.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
|.+|.|..+ +...|..=++.+.+.|++.|+++..+|..+
T Consensus 3 il~i~GS~r-~~s~t~~l~~~~~~~l~~~g~e~~~idl~~ 41 (147)
T pfam03358 3 ILVISGSPR-KGSNTRKLAEWAAELLEEAGAEVELIDLAD 41 (147)
T ss_pred EEEEECCCC-CCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 999976799-887699999999999877699259963233
No 383
>PRK07236 hypothetical protein; Provisional
Probab=35.15 E-value=33 Score=15.00 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=24.3
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 289836787127889999999999999879889996158
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD 39 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~ 39 (300)
|+|+-||. +|-..+.+|.+.|++|.+++-.
T Consensus 9 V~IVGaGi---------aGL~~A~~L~~~G~~v~v~Er~ 38 (386)
T PRK07236 9 AVVVGGSL---------GGLFAANLLRRAGWDVDVFERS 38 (386)
T ss_pred EEEECCCH---------HHHHHHHHHHHCCCCEEEECCC
T ss_conf 89999368---------9999999998589998998689
No 384
>pfam01174 SNO SNO glutamine amidotransferase family. This family and its amidotransferase domain was first described in. It is predicted that members of this family are involved in the pyridoxine biosynthetic pathway, based on the proximity and co-regulation of the corresponding genes and physical interaction between the members of pfam01174 and pfam01680.
Probab=35.10 E-value=33 Score=14.99 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=21.4
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEE
Q ss_conf 99999999987988999615865688887539989999
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN 56 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~ 56 (300)
-+++.+||+++|+++..+...++ +.+. --+|+|
T Consensus 8 l~sv~nal~~lG~e~~~v~~p~d----i~~a-d~LILP 40 (188)
T pfam01174 8 VEEHEEAIKKCGAENKTVKRPED----LAQC-DALIIP 40 (188)
T ss_pred HHHHHHHHHHCCCCEEEECCHHH----HHCC-CEEEEC
T ss_conf 99999999986998799689999----9408-989988
No 385
>pfam01973 MAF_flag10 Protein of unknown function DUF115. This family of archaebacterial proteins has no known function.
Probab=34.70 E-value=34 Score=14.95 Aligned_cols=13 Identities=15% Similarity=0.059 Sum_probs=6.3
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 4444577534876
Q gi|254781179|r 229 RLAFLAHQAIGCR 241 (300)
Q Consensus 229 ~~a~~~~~alg~~ 241 (300)
..|..++..||++
T Consensus 143 ~~a~~lA~~lG~~ 155 (169)
T pfam01973 143 NRAVDLAVYLGFK 155 (169)
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999981998
No 386
>TIGR01169 rplA_bact ribosomal protein L1; InterPro: IPR005878 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein L1 is the largest protein from the large ribosomal subunit. In Escherichia coli, L1 is known to bind to the 23S rRNA. This model describe s bacterial and chloroplast ribosomal protein L1. Most mitochondrial L1 sequences are sufficiently divergent to be the contained in a different entry (IPR005879 from INTERPRO).; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit.
Probab=34.39 E-value=30 Score=15.31 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=12.2
Q ss_pred EEEEEEEEECCCCEEEE
Q ss_conf 57999999768983999
Q gi|254781179|r 243 ISRSDFLFDPLSRKVFW 259 (300)
Q Consensus 243 ~~rvDf~~d~~~g~~~~ 259 (300)
-+||+||.| +.|-+++
T Consensus 156 ~G~vefR~D-K~G~iH~ 171 (227)
T TIGR01169 156 KGRVEFRAD-KAGNIHA 171 (227)
T ss_pred CCCEEEEEC-CCEEEEE
T ss_conf 795046515-8515877
No 387
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=34.38 E-value=34 Score=14.92 Aligned_cols=36 Identities=25% Similarity=0.353 Sum_probs=28.2
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf 289836787127889999999999999879889996158656888
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV 45 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~ 45 (300)
|+||-+|. -|..++..+...||+|.++|.+.+....
T Consensus 2 V~ViGaG~---------mG~~iA~~~a~~G~~V~l~D~~~~~l~~ 37 (180)
T pfam02737 2 VAVIGAGT---------MGAGIAQVFARAGLEVVLVDISEEALEK 37 (180)
T ss_pred EEEECCCH---------HHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 89999788---------9999999999679939999799899999
No 388
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=34.32 E-value=34 Score=14.91 Aligned_cols=33 Identities=27% Similarity=0.435 Sum_probs=27.7
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
++|+.||.| -=|+++++.|.+.|.+|..+|.+.
T Consensus 11 valVTGgs~-------GIG~aia~~la~~Ga~V~~~d~~~ 43 (266)
T PRK06171 11 IIIVTGGSS-------GIGLAIVEELLAQGANVQMVDIHG 43 (266)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 799947787-------899999999998799999997885
No 389
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=34.31 E-value=34 Score=14.91 Aligned_cols=37 Identities=27% Similarity=0.199 Sum_probs=28.7
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf 28983678712788999999999999987988999615865688
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL 44 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~ 44 (300)
++|+.||.| . =|+++++.|-+.|.+|.+.+.+.+-..
T Consensus 11 ~alVTG~s~---G----IG~aiA~~la~~Ga~Vvi~~r~~~~l~ 47 (251)
T PRK07523 11 RALITGSSQ---G----IGYALAKGLAQAGAEVILNGRDAAKLA 47 (251)
T ss_pred EEEEECCCC---H----HHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 899958366---9----999999999987999999969989999
No 390
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=34.09 E-value=34 Score=14.89 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=27.5
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH
Q ss_conf 2898367871278899999999999998798899961586568
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG 43 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~ 43 (300)
++|+.|+.| .|.| |.+++..|.+.|.+|.+.+.++...
T Consensus 8 ~~lVTGaag-~rGI----G~aiA~~la~~Ga~Vvi~~~~~~~~ 45 (256)
T PRK08594 8 TYVVMGVAN-KRSI----AWGIARSLHNAGAKLVFTYAGERLE 45 (256)
T ss_pred EEEEECCCC-CCHH----HHHHHHHHHHCCCEEEEECCCCHHH
T ss_conf 899989999-9639----9999999998799999974880669
No 391
>PRK07776 consensus
Probab=33.94 E-value=35 Score=14.87 Aligned_cols=46 Identities=26% Similarity=0.201 Sum_probs=32.7
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH-HHHCCCCE
Q ss_conf 289836787127889999999999999879889996158656888-87539989
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDL 53 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~-l~~~~~D~ 53 (300)
++++.||.+ -=|++++..|-+.|.+|.+.+.+++.... .++.+.+-
T Consensus 10 v~lITG~~~-------GIG~aiA~~la~~Ga~V~i~~~~~~~l~~~~~~l~~~~ 56 (252)
T PRK07776 10 TAIVTGASR-------GIGLAIAQALAAAGANVVITARKQEALDEAAAQLGAER 56 (252)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCC
T ss_conf 899947787-------99999999999879989999798899999999847995
No 392
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=33.62 E-value=35 Score=14.84 Aligned_cols=38 Identities=13% Similarity=0.063 Sum_probs=24.7
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 28983678712788999999999999987988999615
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV 38 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~ 38 (300)
|+++.--.-++....=.....+++.|.+.||+|.++-.
T Consensus 2 Ilii~~~~~P~~GG~e~~~~~la~~L~~~G~~V~vit~ 39 (374)
T cd03801 2 ILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTP 39 (374)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 89994877999881999999999999977998999960
No 393
>TIGR01179 galE UDP-glucose 4-epimerase; InterPro: IPR005886 Synonym: UDP-galactose 4-epimerase UDP-glucose 4-epimerase (5.1.3.2 from EC) interconverts UDP-glucose and UDP-galactose which are precursors of glucose- and galactose-containing exopolysaccharides (EPS). A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded and described by a separate model. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0006012 galactose metabolic process.
Probab=33.58 E-value=35 Score=14.84 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=28.2
Q ss_pred HHHHHHHHHHCCCEEEEECCC-----------------------------CCHHHHHH----HCCCCEEEE
Q ss_conf 999999999879889996158-----------------------------65688887----539989999
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVD-----------------------------RSVGLVLA----HLKPDLAFN 56 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~-----------------------------~~~~~~l~----~~~~D~vf~ 56 (300)
|..+++.|.+.||+|+++|-= +.+...+. +.+||.|+-
T Consensus 12 GSHt~~~Ll~~G~ev~vlDNLs~G~~~~l~~~~~~~G~~~~fv~gDL~D~~~l~~~f~kqql~~~idAViH 82 (341)
T TIGR01179 12 GSHTVRQLLESGYEVVVLDNLSNGSAEALKRGEEITGKEVTFVEGDLRDRELLRRVFEKQQLEHKIDAVIH 82 (341)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 35887887635972899815788848875002341485320587175157999999877431167546752
No 394
>PRK05282 peptidase E; Validated
Probab=33.42 E-value=35 Score=14.82 Aligned_cols=77 Identities=21% Similarity=0.178 Sum_probs=45.2
Q ss_pred ECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCCCCC--------CCCCHHHHHHH--H
Q ss_conf 3678712788999999999999987988999615865688887539989999254884--------34310235666--4
Q gi|254781179|r 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF--------GEDGLVQAILE--L 74 (300)
Q Consensus 5 ~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~lhG~~--------gEdg~iq~~le--~ 74 (300)
|-|.+..|+- =.+.+.+++.++|++|.-+...++....++. -|.+|.- |.. -|.|.+..+-+ .
T Consensus 39 yA~~~~~~d~---Yt~~v~~af~~lg~~v~gih~~~dp~~AI~~--Ad~I~vg--GGNTF~Ll~~L~~~gl~~~ir~~V~ 111 (233)
T PRK05282 39 YAGVTQSWDD---YTAKVAEVLAPLGIEVTGIHRVEDPVAAIEN--ADGIIVG--GGNTFQLLKQLYERGLLAPIREAVK 111 (233)
T ss_pred CCCCCCCHHH---HHHHHHHHHHHCCCEEEEEECCCCHHHHHHH--CCEEEEC--CCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 8888798899---9999999998669828876245898999974--9979986--9739999999998582999999998
Q ss_pred HHHHCCCCCHHHHH
Q ss_conf 32100231002332
Q gi|254781179|r 75 LEIPYTHSGILASA 88 (300)
Q Consensus 75 ~~ipy~Gs~~~~~~ 88 (300)
.|.||+|.++-+--
T Consensus 112 ~G~pYiG~SAGsni 125 (233)
T PRK05282 112 NGTPYIGWSAGANV 125 (233)
T ss_pred CCCCEEEECCHHHH
T ss_conf 49977962641540
No 395
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=33.37 E-value=35 Score=14.81 Aligned_cols=57 Identities=28% Similarity=0.299 Sum_probs=34.1
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 28983678712788999999999999987988999615865688887539989999254884343102356664321002
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~lhG~~gEdg~iq~~le~~~ipy~ 80 (300)
|+|+-|| ..|-.++..|.++|.+|.+++..+.+.. ...+++. ..++..|+..||.+.
T Consensus 2 v~iiGgG---------~ig~E~A~~l~~~G~~Vtiie~~~~~l~---~~d~~~~-----------~~~~~~l~~~GV~i~ 58 (82)
T pfam00070 2 VVVVGGG---------YIGLEFASALAKLGSKVTVVERRDRLLR---GFDEEIA-----------KILQEKLEKNGIEVL 58 (82)
T ss_pred EEEECCC---------HHHHHHHHHHHHCCCEEEEECCCCCCCH---HCCHHHH-----------HHHHHHHHHCCCEEE
T ss_conf 9999988---------9999999999863927899812573302---2798899-----------999999986699997
No 396
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=33.36 E-value=35 Score=14.81 Aligned_cols=45 Identities=20% Similarity=0.112 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECC
Q ss_conf 278899999999999998798899961586568888753998999925
Q gi|254781179|r 11 EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVL 58 (300)
Q Consensus 11 E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~l 58 (300)
|-+..+ +..+...|++.||+|....-.+.....+. .+||+|+-=+
T Consensus 8 EDd~~l--~~~l~~~L~~~G~~V~~a~~g~~al~~l~-~~~DlvilDi 52 (232)
T PRK10955 8 DDDREL--TSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDV 52 (232)
T ss_pred ECCHHH--HHHHHHHHHHCCCEEEEECCHHHHHHHHH-CCCCEEEEEC
T ss_conf 698999--99999999888999999899999999964-8989999918
No 397
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=33.20 E-value=36 Score=14.80 Aligned_cols=48 Identities=25% Similarity=0.352 Sum_probs=32.1
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC-------CCHHHHHHHCCCCEEEECC
Q ss_conf 9836787127889999999999999879889996158-------6568888753998999925
Q gi|254781179|r 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-------RSVGLVLAHLKPDLAFNVL 58 (300)
Q Consensus 3 vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~-------~~~~~~l~~~~~D~vf~~l 58 (300)
+|+|+.. .=|..+++.|. .+++|+.++.. ..+...+.+.+||+|+|+.
T Consensus 4 Li~G~~G-------qLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~~~~PDvVIn~A 58 (281)
T COG1091 4 LITGANG-------QLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIRETRPDVVINAA 58 (281)
T ss_pred EEECCCC-------HHHHHHHHHHC-CCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEECC
T ss_conf 9976987-------67999999717-7843995157655556858999999861999899873
No 398
>PRK06128 oxidoreductase; Provisional
Probab=33.09 E-value=36 Score=14.79 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=26.7
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
+||+.||.|. =|++++.+|-+.|.+|.+.+.++
T Consensus 57 vAlVTGgssG-------IG~AiA~~lA~eGA~Vvi~~~~~ 89 (300)
T PRK06128 57 KALITGADSG-------IGRATAIAFAREGADIVLNYLPE 89 (300)
T ss_pred EEEEECCCCH-------HHHHHHHHHHHCCCEEEEECCCC
T ss_conf 5899173669-------99999999998699999942995
No 399
>PRK06114 short chain dehydrogenase; Provisional
Probab=32.99 E-value=36 Score=14.78 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=27.4
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
++|+.||.| -=|++++..|-+.|.+|.++|...
T Consensus 18 valVTGa~~-------GIG~aiA~~la~~Ga~V~i~~~~~ 50 (262)
T PRK06114 18 VAFVTGAGS-------GIGQRIAIGLAQAGADVALFDLRT 50 (262)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 899968478-------999999999998799899995897
No 400
>PRK08251 short chain dehydrogenase; Provisional
Probab=32.80 E-value=36 Score=14.76 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=26.3
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28983678712788999999999999987988999615865
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS 41 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~ 41 (300)
.+++.|+.| . =|++++..|.+.|+++.+++-+.+
T Consensus 4 ~vlITGAss---G----IG~alA~~la~~G~~v~l~~r~~~ 37 (248)
T PRK08251 4 KILITGASS---G----LGAGMAREFAAKGRDLALCARRTD 37 (248)
T ss_pred EEEEECCCC---H----HHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 899947863---9----999999999987998999989888
No 401
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=32.65 E-value=36 Score=14.74 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH
Q ss_conf 999999999999879889996158656888875
Q gi|254781179|r 16 LSSGKACASALEDAGFKVSQIDVDRSVGLVLAH 48 (300)
Q Consensus 16 l~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~ 48 (300)
..-|..+++.|++.|++|.+=+-++.+...+..
T Consensus 17 ~~~a~~l~~~L~~~gi~v~~Ddr~~~~g~k~~~ 49 (94)
T cd00738 17 REYAQKLLNALLANGIRVLYDDRERKIGKKFRE 49 (94)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH
T ss_conf 999999999999889989998799997599999
No 402
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=32.55 E-value=36 Score=14.73 Aligned_cols=38 Identities=18% Similarity=0.333 Sum_probs=25.1
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEE
Q ss_conf 99999999987988999615865688887539989999
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN 56 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~ 56 (300)
...+...|++.||+|........-...+...+||+|+-
T Consensus 17 r~~l~~~L~~~G~~V~~a~~~~~Al~~l~~~~~Dlvll 54 (457)
T PRK11361 17 RRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLM 54 (457)
T ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEE
T ss_conf 99999999977998999899999999986689899998
No 403
>TIGR00003 TIGR00003 copper ion binding protein; InterPro: IPR006122 Proteins that transport heavy metals in micro-organisms and eukaryotes share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases . A conserved 30-residue domain has been found in a number of these heavy metal transport or detoxification proteins . The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. This sub-domain is found in copper-binding proteins. ; GO: 0005507 copper ion binding, 0006825 copper ion transport.
Probab=32.55 E-value=23 Score=16.03 Aligned_cols=15 Identities=40% Similarity=0.601 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHCCCE
Q ss_conf 999999999987988
Q gi|254781179|r 18 SGKACASALEDAGFK 32 (300)
Q Consensus 18 S~~~i~~aL~~~g~~ 32 (300)
|++.|.+||.+.||+
T Consensus 50 ~~~~I~~Ai~d~GY~ 64 (66)
T TIGR00003 50 SAKEIKEAILDAGYE 64 (66)
T ss_pred CHHHHHHHHHHCCCC
T ss_conf 467788898736653
No 404
>PRK08105 flavodoxin; Provisional
Probab=32.49 E-value=36 Score=14.72 Aligned_cols=37 Identities=14% Similarity=0.328 Sum_probs=25.1
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
|.||||=.+.- |-.=|+.+++.|.+.|+++.+.+.++
T Consensus 4 i~IlygS~TGn---ae~~A~~la~~l~~~g~~~~v~~~~~ 40 (149)
T PRK08105 4 VGIFVGTVYGN---ALLVAEEAEAILTAQGHEVTLFEDPE 40 (149)
T ss_pred EEEEEECCCHH---HHHHHHHHHHHHHHCCCCEEEECHHH
T ss_conf 79999888327---99999999999996799439952110
No 405
>PRK12743 acetoin dehydrogenase; Provisional
Probab=32.38 E-value=37 Score=14.71 Aligned_cols=31 Identities=32% Similarity=0.436 Sum_probs=25.3
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 28983678712788999999999999987988999615
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV 38 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~ 38 (300)
|+|+.||.+ . =|++++..|-+.|++|.+.+.
T Consensus 4 ValITGgs~---G----IG~a~a~~la~~Ga~V~i~~~ 34 (253)
T PRK12743 4 VAIVTASDS---G----IGKACALLLAQQGFDIGITWH 34 (253)
T ss_pred EEEEECCCC---H----HHHHHHHHHHHCCCEEEEECC
T ss_conf 899907588---9----999999999987998999748
No 406
>PRK05884 short chain dehydrogenase; Provisional
Probab=32.37 E-value=37 Score=14.71 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=29.5
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
Q ss_conf 8983678712788999999999999987988999615865688887
Q gi|254781179|r 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA 47 (300)
Q Consensus 2 ~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~ 47 (300)
.|+.||.+. =|+++++.|.+.|++|.+++.+++......
T Consensus 3 VlVTGgs~G-------IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~ 41 (223)
T PRK05884 3 VLVTGGDTD-------LGRTIAEGFRNDGHKVTLVGARRDDLEVAA 41 (223)
T ss_pred EEEECCCCH-------HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 999878879-------999999999987999999959878999998
No 407
>PRK08163 salicylate hydroxylase; Provisional
Probab=32.30 E-value=37 Score=14.70 Aligned_cols=32 Identities=34% Similarity=0.511 Sum_probs=25.7
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28983678712788999999999999987988999615865
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS 41 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~ 41 (300)
|+|+-||+ +|...+.+|.+.|++|.+++....
T Consensus 7 V~IVGaGi---------aGL~lA~~L~r~Gi~v~V~Er~~~ 38 (396)
T PRK08163 7 VLIVGGGI---------GGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred EEEECCCH---------HHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 99989788---------999999999978999999917998
No 408
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=32.27 E-value=37 Score=14.70 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH
Q ss_conf 999999999999879889996158656888875
Q gi|254781179|r 16 LSSGKACASALEDAGFKVSQIDVDRSVGLVLAH 48 (300)
Q Consensus 16 l~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~ 48 (300)
..-+..+++.|++.|++|.+=|-+....+.+..
T Consensus 17 ~~~a~~l~~~L~~~gi~v~~Ddr~~~~G~K~~~ 49 (94)
T cd00861 17 QELAEKLYAELQAAGVDVLLDDRNERPGVKFAD 49 (94)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH
T ss_conf 999999999998879899998799727799999
No 409
>PRK08017 short chain dehydrogenase; Provisional
Probab=32.20 E-value=37 Score=14.69 Aligned_cols=44 Identities=18% Similarity=0.103 Sum_probs=31.3
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCC
Q ss_conf 289836787127889999999999999879889996158656888875399
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~ 51 (300)
++|+.||.| . =|+++++.|.+.|++|...+-+.+....+.....
T Consensus 4 ~vlITGass---G----IG~a~A~~la~~G~~V~~~~r~~~~l~~~~~~~~ 47 (256)
T PRK08017 4 SVLITGCSS---G----IGLESALELKRQGFRVLAGCRKPDDVARMNSMGF 47 (256)
T ss_pred EEEEECCCC---H----HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC
T ss_conf 899965876---8----9999999999879999999699899999985699
No 410
>PRK08329 threonine synthase; Validated
Probab=32.18 E-value=37 Score=14.69 Aligned_cols=84 Identities=15% Similarity=0.085 Sum_probs=29.8
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHH---HHCCCCEEEECCCCCCCCCCH-HHHHHHHHHHHCCCCCHHHHHHCCCCH
Q ss_conf 9999999998798899961586568888---753998999925488434310-235666432100231002332036500
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVL---AHLKPDLAFNVLHGNFGEDGL-VQAILELLEIPYTHSGILASALSMDKM 94 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l---~~~~~D~vf~~lhG~~gEdg~-iq~~le~~~ipy~Gs~~~~~~l~~dK~ 94 (300)
|.+++.+....|.+..++-+......++ ....-++++ +.|.+.+... ...+.+..|+.|+++....-.+.--|-
T Consensus 116 g~a~A~~aa~~Gi~~~I~vP~~a~~~K~~~~~~~GA~v~~--v~g~~~~~~~~a~~~~~~~g~~~~~~~~np~~ieGqkT 193 (348)
T PRK08329 116 AISLAVYSLFEGIRVHVFVSYNARKEKISLLSSLGAELHF--VEGDRMKVHEEAVKFSRRNNIPYVSHWLNPYFLEGTKT 193 (348)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCEEEE--ECCCHHHHHHHHHHHHHHCCCEECCCCCCHHHHHCCCC
T ss_conf 9999999998499779995899889999999970988999--85999999999999999809875376567466514662
Q ss_pred HCCCCCCCCE
Q ss_conf 1000021210
Q gi|254781179|r 95 RSKQVVSSCG 104 (300)
Q Consensus 95 ~~k~~l~~~g 104 (300)
...+++.+.+
T Consensus 194 ia~Ei~eql~ 203 (348)
T PRK08329 194 IAYEIYEQVG 203 (348)
T ss_pred HHHHHHHHCC
T ss_conf 7999998719
No 411
>PRK06924 short chain dehydrogenase; Provisional
Probab=31.99 E-value=37 Score=14.67 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=26.8
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
++|+.||.| -=|+++++.|-+.|++|+.++-+.
T Consensus 3 ~alITGas~-------GIG~aiA~~la~~G~~V~~~~r~~ 35 (251)
T PRK06924 3 YVIITGTSK-------GLGEAIATQLLEKGTSVISISRRE 35 (251)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 999929874-------999999999998799999997982
No 412
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=31.89 E-value=37 Score=14.66 Aligned_cols=39 Identities=28% Similarity=0.262 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCC---HHHHHHHCCCCEEEE
Q ss_conf 999999999987988999615865---688887539989999
Q gi|254781179|r 18 SGKACASALEDAGFKVSQIDVDRS---VGLVLAHLKPDLAFN 56 (300)
Q Consensus 18 S~~~i~~aL~~~g~~v~~id~~~~---~~~~l~~~~~D~vf~ 56 (300)
-.+-++..|+..||+|+.+..+.. +.....+.+||++..
T Consensus 15 G~~iv~~~l~~~G~~V~~lG~~vp~e~~v~~a~~~~~d~I~l 56 (119)
T cd02067 15 GKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGL 56 (119)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 999999999978998998999999999999999709999999
No 413
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.63 E-value=38 Score=14.63 Aligned_cols=38 Identities=16% Similarity=-0.004 Sum_probs=29.2
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf 289836787127889999999999999879889996158656888
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV 45 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~ 45 (300)
++++.||.+ . =|.+++..|.+.|.+|++.+.+++....
T Consensus 7 ~~lVTGas~---G----IG~aiA~~la~~Ga~V~i~~r~~~~l~~ 44 (238)
T PRK05786 7 NVLIVGVSP---G----LGYAVAYFALREGASVYAFARSEEKLKE 44 (238)
T ss_pred EEEEECCCC---H----HHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 899928987---8----9999999999879999999698899999
No 414
>KOG2520 consensus
Probab=31.50 E-value=19 Score=16.52 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHC
Q ss_conf 23566643210023100233203
Q gi|254781179|r 68 VQAILELLEIPYTHSGILASALS 90 (300)
Q Consensus 68 iq~~le~~~ipy~Gs~~~~~~l~ 90 (300)
+|.||..+||||+-++.+|-+-|
T Consensus 471 ~QElL~~fGIPyI~APmEAEAQC 493 (815)
T KOG2520 471 LQELLRLFGIPYIIAPMEAEAQC 493 (815)
T ss_pred HHHHHHHCCCCEECCCCCHHHHH
T ss_conf 99999984996452662078889
No 415
>PRK07063 short chain dehydrogenase; Provisional
Probab=31.25 E-value=38 Score=14.59 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=29.1
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH
Q ss_conf 2898367871278899999999999998798899961586568
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG 43 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~ 43 (300)
++|+.||.+ . =|++++..|-+.|.+|.+.|.+.+..
T Consensus 9 valVTGa~~---G----IG~aiA~~~a~~Ga~V~i~~~~~~~~ 44 (259)
T PRK07063 9 VALVTGAAQ---G----IGAAIARAFVREGAAVALADLDAALA 44 (259)
T ss_pred EEEEECCCC---H----HHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 899958787---8----99999999998799899997987899
No 416
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=31.24 E-value=38 Score=14.59 Aligned_cols=75 Identities=20% Similarity=0.199 Sum_probs=49.3
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC------HHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 28983678712788999999999999987988999615865------688887539989999254884343102356664
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~------~~~~l~~~~~D~vf~~lhG~~gEdg~iq~~le~ 74 (300)
|||+.--.+.-.-..+ .+.+-+++++.||++.+.+.+.+ ....+...++|-++.. +....+ .....|+.
T Consensus 2 Igvivp~l~npff~~l--~~gi~~~~~~~gy~~~i~~s~~d~~~e~~~i~~l~~~~vDGiIi~--~~~~~~-~~~~~l~~ 76 (268)
T cd01575 2 VAVLVPSLSNSVFADV--LQGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILT--GLEHTE-RTRQLLRA 76 (268)
T ss_pred EEEEECCCCCHHHHHH--HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE--CCCCCH-HHHHHHHH
T ss_conf 9999899878899999--999999999869999999789998999999999995699999994--377998-99999997
Q ss_pred HHHHCC
Q ss_conf 321002
Q gi|254781179|r 75 LEIPYT 80 (300)
Q Consensus 75 ~~ipy~ 80 (300)
.++|++
T Consensus 77 ~~iPvV 82 (268)
T cd01575 77 AGIPVV 82 (268)
T ss_pred CCCCEE
T ss_conf 799699
No 417
>PHA01630 putative group 1 glycosyl transferase
Probab=31.19 E-value=38 Score=14.59 Aligned_cols=113 Identities=16% Similarity=0.190 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEE-ECCCCC--C-CC------------CC-HHH-HHHH
Q ss_conf 78899999999999998798899961586568888753998999-925488--4-34------------31-023-5666
Q gi|254781179|r 12 REVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAF-NVLHGN--F-GE------------DG-LVQ-AILE 73 (300)
Q Consensus 12 ~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf-~~lhG~--~-gE------------dg-~iq-~~le 73 (300)
|++|. +.-..+.|+.+||+++..|.++-....+....|+.+. +...+. + |. |. .|. ..+.
T Consensus 13 ~~v~~--k~l~~e~lK~L~~k~~vfe~~~l~~~~~~P~~~~~i~~~~f~sm~~Wk~i~~~~~~i~~EVaDTD~Is~~~l~ 90 (333)
T PHA01630 13 SFVRQ--KKLLEEHLKMLGHKVTVFEKPTLTKYQLPPGYPIYIYYTIFNSMLFWKGIPHVGKNIVFEVADTDAISHTALY 90 (333)
T ss_pred CHHHH--HHHHHHHHHHHCCEEEEEECCCCCHHHCCCCCCEEEEEEECCCEEEECCCCCCCCEEEEEEECCHHHHHHHHH
T ss_conf 31678--9999999998586668864475431006999960799750024135325753353479996061677799999
Q ss_pred HH-HHHCCCCCHHHHHHCCCCHHCCCCCCCCEEEC--CCEEEECCCCC----HHHHHCCCCEEEEEC
Q ss_conf 43-21002310023320365001000021210000--12132022200----012210586256432
Q gi|254781179|r 74 LL-EIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CPSILVNRFTM----DSQHLISPPYVIKPL 133 (300)
Q Consensus 74 ~~-~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIpt--p~~~~~~~~~~----~~~~~~~~P~ivKP~ 133 (300)
.. +-| +-++--+-..++..+...|+++ |-+.+-...+. ...+....|||+--.
T Consensus 91 ~~~n~~-------~D~ivv~SqWS~naf~~sgl~I~~PiY~IpHn~nprm~~~~~kek~~~~Vl~~l 150 (333)
T PHA01630 91 FFRNQP-------VDEIVVPSQWSKNAFYTSGLKIPQPIYVIPHNLNPRMFEYKPKEKPHPCVLAIL 150 (333)
T ss_pred HHHHCC-------CCEEEECCHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHCCHHHCCCCEEEEEC
T ss_conf 986087-------540674244436578752899998627645679935640763218875699985
No 418
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=31.10 E-value=38 Score=14.58 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=25.0
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEE
Q ss_conf 99999999987988999615865688887539989999
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN 56 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~ 56 (300)
...+...|++.||+|............+....||+|+-
T Consensus 18 ~~~l~~~L~~~G~~v~~a~~~~~al~~l~~~~~Dlvll 55 (441)
T PRK10365 18 CTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLC 55 (441)
T ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEE
T ss_conf 99999999977998999899999999986489999998
No 419
>PRK07035 short chain dehydrogenase; Provisional
Probab=31.09 E-value=38 Score=14.58 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=27.3
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28983678712788999999999999987988999615865
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS 41 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~ 41 (300)
++|+.||.| -=|++++..|.+.|++|.+.+.+.+
T Consensus 10 valITGas~-------GIG~aia~~la~~Ga~V~i~~r~~~ 43 (252)
T PRK07035 10 IALVTGASR-------GIGEAIAKLLAQQGAHVIVSSRKLD 43 (252)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 899958874-------9999999999987998999979889
No 420
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=30.94 E-value=39 Score=14.56 Aligned_cols=67 Identities=24% Similarity=0.170 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCC--CCCCCC--CHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999987988999615865688887539989999254--884343--102356664321002310
Q gi|254781179|r 17 SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH--GNFGED--GLVQAILELLEIPYTHSG 83 (300)
Q Consensus 17 ~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~lh--G~~gEd--g~iq~~le~~~ipy~Gs~ 83 (300)
.+++.+.+-|.+.|+.+-.++....-...+...+||++|.-+. |-.|=| -.++.+....+|-|+.+-
T Consensus 11 a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~kpDLifldI~mp~~ngiefaeQvr~i~~~v~iifIssh 81 (361)
T COG3947 11 AIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFKPDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFISSH 81 (361)
T ss_pred HHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 99999999998611021006887889999984388779998523786087899999875314868999630
No 421
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=30.84 E-value=39 Score=14.55 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=7.6
Q ss_pred EEEEEEECCCCEEEEEEECCC
Q ss_conf 999999768983999974726
Q gi|254781179|r 245 RSDFLFDPLSRKVFWLEINVQ 265 (300)
Q Consensus 245 rvDf~~d~~~g~~~~lEvN~~ 265 (300)
|-=|++|+ +|.+-.+.+|+.
T Consensus 118 R~~FIIDp-~g~Ir~~~v~~~ 137 (203)
T cd03016 118 RAVFIIDP-DKKIRLILYYPA 137 (203)
T ss_pred EEEEEECC-CCEEEEEEECCC
T ss_conf 78999899-983999997587
No 422
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.72 E-value=39 Score=14.54 Aligned_cols=32 Identities=28% Similarity=0.302 Sum_probs=26.8
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 289836787127889999999999999879889996158
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD 39 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~ 39 (300)
++++.||.+ -=|+++++.|.+.|++|.+.+..
T Consensus 9 ~~lITGas~-------GIG~aia~~la~~G~~V~~~~~~ 40 (250)
T PRK12825 9 VALVTGAAR-------GIGRAIALRLAAAGADVIVHPPS 40 (250)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECC
T ss_conf 899938955-------89999999999879989999798
No 423
>PRK07831 short chain dehydrogenase; Provisional
Probab=30.61 E-value=39 Score=14.52 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=27.3
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28983678712788999999999999987988999615865
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS 41 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~ 41 (300)
++++.||.+ +.| |++++..|-+.|.+|.+.|.+.+
T Consensus 18 valVTGgsg--~GI----G~a~a~~la~~Ga~V~i~d~~~~ 52 (261)
T PRK07831 18 VVVVTAAAG--TGI----GSATARRALEEGADVVISDIHER 52 (261)
T ss_pred EEEEECCCC--CHH----HHHHHHHHHHCCCEEEEEECCHH
T ss_conf 499949996--478----99999999987998999808777
No 424
>PRK04148 hypothetical protein; Provisional
Probab=30.35 E-value=40 Score=14.50 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=15.3
Q ss_pred HHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf 999999987988999615865688
Q gi|254781179|r 21 ACASALEDAGFKVSQIDVDRSVGL 44 (300)
Q Consensus 21 ~i~~aL~~~g~~v~~id~~~~~~~ 44 (300)
.++..|++.|++|..+|++..-..
T Consensus 30 ~vA~~L~e~g~dv~~~Din~~aV~ 53 (135)
T PRK04148 30 KVAKKLKESGFDVIVIDINKKAVE 53 (135)
T ss_pred HHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 899999874998899957655432
No 425
>PRK06346 consensus
Probab=30.28 E-value=40 Score=14.49 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=28.1
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28983678712788999999999999987988999615865
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS 41 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~ 41 (300)
++|+.||.+ -=|+++++.|.+.|.+|.+++.+.+
T Consensus 7 v~lITGgs~-------GIG~a~a~~la~~Ga~V~i~~r~~e 40 (251)
T PRK06346 7 VAIVTGAAS-------GMGKSIAELFAKEGAKVVVADLNLE 40 (251)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 899947578-------8999999999987998999979899
No 426
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=30.27 E-value=40 Score=14.49 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHCCCEEEEECC
Q ss_conf 9999999999987988999615
Q gi|254781179|r 17 SSGKACASALEDAGFKVSQIDV 38 (300)
Q Consensus 17 ~S~~~i~~aL~~~g~~v~~id~ 38 (300)
.....++++|.+.||+|.++-.
T Consensus 14 ~~~~~La~~L~~~Gh~V~vit~ 35 (359)
T cd03808 14 SFRLPLIKALRAAGYEVHVVAP 35 (359)
T ss_pred HHHHHHHHHHHHCCCEEEEEEE
T ss_conf 9999999999976999999970
No 427
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=30.27 E-value=40 Score=14.49 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=27.4
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28983678712788999999999999987988999615865
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS 41 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~ 41 (300)
++++.||.+. =|+++++.|.+.|++|..++.++.
T Consensus 12 ~alITGas~G-------IG~aia~~la~~Ga~Vv~~~~~~~ 45 (253)
T PRK08993 12 VAVVTGCDTG-------LGQGMALGLAEAGCDIVGINIVEP 45 (253)
T ss_pred EEEEECCCCH-------HHHHHHHHHHHCCCEEEEECCCCH
T ss_conf 8999388768-------999999999987999999558774
No 428
>PRK07201 short chain dehydrogenase; Provisional
Probab=30.21 E-value=40 Score=14.48 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=23.9
Q ss_pred HHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEE
Q ss_conf 666432100231002332036500100002121000012132
Q gi|254781179|r 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 (300)
Q Consensus 71 ~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~ 112 (300)
++..+|+|----+.......+|...|...|+..||.+|+...
T Consensus 306 ~~~~~g~p~~~~~~~~~~~~~d~~~t~~~l~~~~i~~p~l~~ 347 (663)
T PRK07201 306 AATDLGIPAEILDFVNYPTTFDSRETQEALKGTGIEVPRLAS 347 (663)
T ss_pred HHHHCCCCHHHHHHCCCCCEECCHHHHHHHCCCCCCCCCHHH
T ss_conf 676529988898643588664326578876005888877455
No 429
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF; InterPro: IPR012731 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the more widely distributed clade of ThiF proteins as found in E. coli..
Probab=30.04 E-value=40 Score=14.46 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=23.1
Q ss_pred HHHHHHHHHHCC-CEEEEECCCC-------------------------CHHHHHHHCCCCEEEECCC
Q ss_conf 999999999879-8899961586-------------------------5688887539989999254
Q gi|254781179|r 19 GKACASALEDAG-FKVSQIDVDR-------------------------SVGLVLAHLKPDLAFNVLH 59 (300)
Q Consensus 19 ~~~i~~aL~~~g-~~v~~id~~~-------------------------~~~~~l~~~~~D~vf~~lh 59 (300)
|..++..|-..| .++.++|.|. ....++++.++|+.+.+++
T Consensus 33 Gs~~~~~LA~AGVG~i~i~D~D~V~~SNLqRQ~Lf~e~Dv~~~~pK~e~aa~~l~~LN~~i~v~a~~ 99 (210)
T TIGR02356 33 GSPAALYLAAAGVGTITIVDDDHVDLSNLQRQILFAEEDVGTLRPKVEAAAERLRELNSDIRVTALK 99 (210)
T ss_pred HHHHHHHHHHCCCCEEEEEECCEECHHHCHHHHHHCHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 5689999982888378998516770101205543032442013158999999998538896899854
No 430
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=30.04 E-value=40 Score=14.46 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEC
Q ss_conf 999999999998798899961
Q gi|254781179|r 17 SSGKACASALEDAGFKVSQID 37 (300)
Q Consensus 17 ~S~~~i~~aL~~~g~~v~~id 37 (300)
.....+++.|.+.||+|.++.
T Consensus 23 ~~~~~La~~L~~~Gh~V~v~~ 43 (335)
T cd03802 23 RVVAALTEGLVARGHEVTLFA 43 (335)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
T ss_conf 999999999997699899996
No 431
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=29.89 E-value=40 Score=14.45 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=23.2
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 898367871278899999999999998798899961586
Q gi|254781179|r 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 2 ~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
+||.|..|. =|.++++.|.+.||+++++.-++
T Consensus 9 ~lITGASsG-------IG~~~A~~lA~~g~~liLvaR~~ 40 (265)
T COG0300 9 ALITGASSG-------IGAELAKQLARRGYNLILVARRE 40 (265)
T ss_pred EEEECCCCH-------HHHHHHHHHHHCCCEEEEEECCH
T ss_conf 999778864-------89999999997799799996769
No 432
>PRK05875 short chain dehydrogenase; Provisional
Probab=29.85 E-value=40 Score=14.44 Aligned_cols=34 Identities=32% Similarity=0.353 Sum_probs=27.9
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28983678712788999999999999987988999615865
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS 41 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~ 41 (300)
++++.||.+ . =|++++..|.+.|.+|.+.+.+.+
T Consensus 9 ~alVTGas~---G----IG~aiA~~la~~Ga~Vii~~r~~~ 42 (277)
T PRK05875 9 TYLVTGGGS---G----IGKGVAAALVAAGAAVMIVGRNPD 42 (277)
T ss_pred EEEEECCCC---H----HHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 899948874---9----999999999987998999979889
No 433
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.73 E-value=41 Score=14.43 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=33.8
Q ss_pred HHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHH
Q ss_conf 4577534876457999999768983999974726588822389999998399989999
Q gi|254781179|r 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 (300)
Q Consensus 232 ~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li 289 (300)
++.++.||-+.+..+.+|++..+..-.|+=|....|-....-+-...+..|+.+.||-
T Consensus 16 ~~f~~~lg~r~ITEF~YR~~~~~~A~V~vGi~~~~~~~e~~~l~~~L~~~gy~~~Dls 73 (85)
T cd04906 16 KKFCELIGPRNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKSAGYEVVDLS 73 (85)
T ss_pred HHHHHHHCCCCCEEEEEECCCCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCEEECC
T ss_conf 9999985877410357743787637999998727957899999999998799717787
No 434
>cd07046 BMC_PduU-EutS 1,2-propanediol utilization protein U (PduU)/ethanolamine utilization protein S (EutS), Bacterial Micro-Compartment (BMC) domain. PduU encapsulates several related enzymes within a shell composed of a few thousand protein subunits. PduU exists as a hexamer which might further assemble into the flat facets of the polyhedral outer shell of the pdu organelle. This proteinaceous noncarboxysome microcompartment is involved in coenzyme B12-dependent degradation of 1,2-propanediol. The core of PduU is related to the typical BMC domain and its natural oligomeric state is a cyclic hexamer. Unlike other typical BMC domain proteins, the 3D topology of PduU reveals a circular permuted variation on the typical BMC fold which leads to several unique features. The exact functions related to those unique features are still not clear. Another difference is the presence of a deep cavity on one side of the hexamer as well as an intermolecular six-stranded beta barrel that seems to
Probab=29.56 E-value=25 Score=15.76 Aligned_cols=18 Identities=28% Similarity=0.708 Sum_probs=14.1
Q ss_pred CCCCCCCCCEEEEE-ECCC
Q ss_conf 23335788457887-3144
Q gi|254781179|r 167 LIEQYVDGIELTCG-VMGD 184 (300)
Q Consensus 167 lVEefI~G~E~~v~-Vl~~ 184 (300)
++|||+||++++.+ ++.+
T Consensus 3 iIQE~VPGKQvTlAHiIa~ 21 (110)
T cd07046 3 IIQEYVPGKQITLAHLIAN 21 (110)
T ss_pred EEEEECCCCEEEEEHHHCC
T ss_conf 0465068634451122439
No 435
>pfam03129 HGTP_anticodon Anticodon binding domain. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases it is probably the anticodon binding domain.
Probab=29.53 E-value=41 Score=14.41 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH
Q ss_conf 99999999999879889996158656888875
Q gi|254781179|r 17 SSGKACASALEDAGFKVSQIDVDRSVGLVLAH 48 (300)
Q Consensus 17 ~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~ 48 (300)
.=+..+++.|.+.|+++.+-+.++.+...+..
T Consensus 15 ~~a~~i~~~Lr~~gi~v~~d~~~~~~~~k~~~ 46 (93)
T pfam03129 15 DYAQKLAEELREAGIRVELDDRNESLGKKFRD 46 (93)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH
T ss_conf 99999999998789979998899997899998
No 436
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=29.47 E-value=41 Score=14.40 Aligned_cols=41 Identities=15% Similarity=0.036 Sum_probs=22.1
Q ss_pred HHHHHHHCCCCEEEECCCCCCCC-CCHHHHHHHHHHHHCCCC
Q ss_conf 68888753998999925488434-310235666432100231
Q gi|254781179|r 42 VGLVLAHLKPDLAFNVLHGNFGE-DGLVQAILELLEIPYTHS 82 (300)
Q Consensus 42 ~~~~l~~~~~D~vf~~lhG~~gE-dg~iq~~le~~~ipy~Gs 82 (300)
....+++....+|+.+-.=.+-| -..++.+||..||||+--
T Consensus 39 v~Kaierg~a~LvviA~Dv~P~eiv~hlP~LCeek~IPy~~V 80 (123)
T PRK04175 39 TTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYV 80 (123)
T ss_pred HHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 999998098878999789990999998899998549998997
No 437
>PRK07707 consensus
Probab=29.40 E-value=41 Score=14.39 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=25.6
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 28983678712788999999999999987988999615
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV 38 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~ 38 (300)
+||+.||.+ -=|+++++.|-+.|++|.+.+.
T Consensus 4 valVTG~s~-------GIG~aia~~la~~Ga~V~i~~~ 34 (239)
T PRK07707 4 YALVTGASG-------GIGQAISKQLAQDGYTVYLHYN 34 (239)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEECC
T ss_conf 999966887-------8999999999987998999839
No 438
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=29.27 E-value=41 Score=14.38 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=11.5
Q ss_pred HHHHHHHHCCCEEEEECCCC
Q ss_conf 99999998798899961586
Q gi|254781179|r 21 ACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 21 ~i~~aL~~~g~~v~~id~~~ 40 (300)
+++++|.+ .++|+.+-+++
T Consensus 18 ~L~~~l~~-~~~V~VvAP~~ 36 (253)
T PRK13933 18 TLAELLSK-YHNVIIVAPEN 36 (253)
T ss_pred HHHHHHHC-CCCEEEEECCC
T ss_conf 99999861-89689994499
No 439
>PRK06724 hypothetical protein; Provisional
Probab=29.25 E-value=41 Score=14.38 Aligned_cols=25 Identities=32% Similarity=0.723 Sum_probs=18.2
Q ss_pred CCEEEEEEEEECCCCEEEEEEECCCCCCC
Q ss_conf 64579999997689839999747265888
Q gi|254781179|r 241 RGISRSDFLFDPLSRKVFWLEINVQPGMT 269 (300)
Q Consensus 241 ~g~~rvDf~~d~~~g~~~~lEvN~~PGlt 269 (300)
.||--||| .|+ || ..+|||-.|++.
T Consensus 77 ~GYY~v~F-eDP-dG--iriEVn~vPn~~ 101 (102)
T PRK06724 77 EGYYTIDF-YDP-NG--FIIEVAYTPNVE 101 (102)
T ss_pred CCEEEEEE-ECC-CC--EEEEEECCCCCC
T ss_conf 85599998-889-96--699983478876
No 440
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=29.13 E-value=41 Score=14.36 Aligned_cols=88 Identities=16% Similarity=0.187 Sum_probs=45.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC---HHHHHHHCCCCEEEECCCCCCCC-------------
Q ss_conf 28983678712788999999999999987988999615865---68888753998999925488434-------------
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---VGLVLAHLKPDLAFNVLHGNFGE------------- 64 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~---~~~~l~~~~~D~vf~~lhG~~gE------------- 64 (300)
|.|+-|| +.|-..+.++.+.|+.|.++..... .-+.+....-=.+=|.+.|..-.
T Consensus 6 ViVIGgG---------hAG~EAA~a~Ar~G~~v~L~emrp~~~tpah~~d~iaem~CnpSigg~~~~~akG~L~~EidaL 76 (434)
T PRK05335 6 VNVIGAG---------LAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDKFAELVCSNSFRSDSLTNAVGLLKEEMRRL 76 (434)
T ss_pred EEEECCC---------HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 6998986---------8999999999968996799993356677762466636873564568886444205899999984
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCC
Q ss_conf 310235666432100231002332036500100002121
Q gi|254781179|r 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 (300)
Q Consensus 65 dg~iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~ 103 (300)
+|.+-...+...||= ..+++-||...++.+++.
T Consensus 77 gglm~~~aD~~~vPA------g~alaVDR~~y~~~m~~~ 109 (434)
T PRK05335 77 GSLIIEAADAHRVPA------GGALAVDREGFSAYVTEA 109 (434)
T ss_pred CCHHHHHHHHHCCCC------CCHHHHHHHHHHHHHHHH
T ss_conf 698999989866787------217899899999999999
No 441
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=29.11 E-value=42 Score=14.36 Aligned_cols=31 Identities=39% Similarity=0.691 Sum_probs=24.6
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
|+|+-||+ +|...+-+|.+.|++|.++|..+
T Consensus 9 V~IvGaGp---------~Gl~lA~~L~~~G~~v~liE~~~ 39 (392)
T PRK08773 9 AVIVGGGV---------VGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred EEEECCCH---------HHHHHHHHHHHCCCCEEEEECCC
T ss_conf 89999069---------99999999986699789991789
No 442
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=29.09 E-value=42 Score=14.36 Aligned_cols=47 Identities=26% Similarity=0.396 Sum_probs=32.4
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC--------------------------------CCHHHHHHHC
Q ss_conf 89836787127889999999999999879889996158--------------------------------6568888753
Q gi|254781179|r 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------------------RSVGLVLAHL 49 (300)
Q Consensus 2 ~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~--------------------------------~~~~~~l~~~ 49 (300)
||+||= |++ |-..+++|-+.||+|..|-.. ......++..
T Consensus 3 avvfaY----h~i----G~~~L~aLleaG~eV~aVvThpD~Pgek~~~~sVk~~A~e~gIPV~qP~~i~~pe~ie~L~~l 74 (660)
T PRK08125 3 AVVFAY----HDI----GCVGIEALLEAGYEIAAVFTHTDNPGENTFFGSVARLAAELGIPVYAPEDVNHPLWVERIAEL 74 (660)
T ss_pred EEEEEE----CHH----HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCCCCCHHHHHHHHHC
T ss_conf 899960----267----699999999789916999867999987768884999999749967647889988999999844
Q ss_pred CCCEEEE
Q ss_conf 9989999
Q gi|254781179|r 50 KPDLAFN 56 (300)
Q Consensus 50 ~~D~vf~ 56 (300)
+||++|-
T Consensus 75 ~PDlivv 81 (660)
T PRK08125 75 APDIIFS 81 (660)
T ss_pred CCCEEEE
T ss_conf 9999999
No 443
>pfam10723 RepB-RCR_reg Replication regulatory protein RepB. This is a family of proteins which regulate replication of rolling circle replication (RCR) plasmids that have a double-strand replication origin (dso). Regulation of replication of RCR plasmids occurs mainly at initiation of leading strand synthesis at the dso, such that Rep protein concentration controls plasmid replication.
Probab=28.95 E-value=42 Score=14.34 Aligned_cols=28 Identities=14% Similarity=0.128 Sum_probs=23.3
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 3899999983999899999999975117
Q gi|254781179|r 272 SIFPEMAAYAGYSFRELLLWMVEDASCL 299 (300)
Q Consensus 272 s~~p~~~~~~G~s~~~li~~ii~~A~~~ 299 (300)
..+-.+|...|++-++||+.+|+...++
T Consensus 54 ~~L~elc~~~GlTQAe~IE~LIe~e~~~ 81 (85)
T pfam10723 54 DDLQELCEEEGLTQAEVIEQLIERELQG 81 (85)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 9999999872971999999999999997
No 444
>KOG2799 consensus
Probab=28.76 E-value=42 Score=14.32 Aligned_cols=65 Identities=22% Similarity=0.244 Sum_probs=34.3
Q ss_pred HCCCCHHCCCCCCCCEEECCCEEEECCCCCHH--HHHC-CCCEEEEEC--CCC-------CC--CCEEEECCHHHHHHH
Q ss_conf 03650010000212100001213202220001--2210-586256432--477-------64--211432598999998
Q gi|254781179|r 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLI-SPPYVIKPL--KGG-------SS--LGIIVIKKDQSIPLD 153 (300)
Q Consensus 89 l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~~--~~~~-~~P~ivKP~--~gg-------sS--~Gv~~v~~~~el~~~ 153 (300)
+...-+..-+++++.|+.+|+.+...+.+... ...+ +--+|||.- .|| || -||.+|.+.+|.+..
T Consensus 23 L~~hey~~~~ll~~~Gv~vp~g~vA~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p~Eak~v 101 (434)
T KOG2799 23 LGIHEYRSAALLRKYGINVPLGYVAKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSPQEAKAV 101 (434)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECHHHHHHH
T ss_conf 4689988999999718788877556887899999997088645997520105766677376767863797675888888
No 445
>KOG3167 consensus
Probab=28.47 E-value=20 Score=16.43 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 23566643210023
Q gi|254781179|r 68 VQAILELLEIPYTH 81 (300)
Q Consensus 68 iq~~le~~~ipy~G 81 (300)
++++||..||||++
T Consensus 94 lP~lCEd~~vPYvy 107 (153)
T KOG3167 94 LPALCEDRGVPYVY 107 (153)
T ss_pred CCHHHHCCCCCCCC
T ss_conf 61454215887303
No 446
>TIGR01722 MMSDH methylmalonate-semialdehyde dehydrogenase; InterPro: IPR010061 These proteins are involved in valine catabolism, methylmalonate-semialdehyde dehydrogenase catalyzes the irreversible NAD+- and CoA-dependent oxidative decarboxylation of methylmalonate semialdehyde to propionyl-CoA. Methylmalonate-semialdehyde dehydrogenase has been characterised in both prokaryotes , and eukaryotes , functioning as a mammalian tetramer and a bacterial homodimer. Although similar in monomeric molecular mass and enzymatic activity, the N-terminal sequence in Pseudomonas aeruginosa does not correspond with the N-terminal sequence predicted for rat liver. Sequence homology to a variety of prokaryotic and eukaryotic aldehyde dehydrogenases places MMSDH in the aldehyde dehydrogenase (NAD+) superfamily making MMSDH's CoA requirement unique among known ALDHs. Methylmalonate semialdehyde dehydrogenase is closely related to betaine aldehyde dehydrogenase, 2-hydroxymuconic semialdehyde dehydrogenase, and class 1 and 2 aldehyde dehydrogenase . In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2 . The preceding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus.; GO: 0004491 methylmalonate-semialdehyde dehydrogenase (acylating) activity, 0006573 valine metabolic process.
Probab=28.44 E-value=37 Score=14.71 Aligned_cols=61 Identities=20% Similarity=0.177 Sum_probs=38.3
Q ss_pred HHCCCCEEEECCCCCCCCCCHHHHHHHHHH---HHCCCCCHHHH-----HHCCCCHHC-CCCCCCCEEECCCE
Q ss_conf 753998999925488434310235666432---10023100233-----203650010-00021210000121
Q gi|254781179|r 47 AHLKPDLAFNVLHGNFGEDGLVQAILELLE---IPYTHSGILAS-----ALSMDKMRS-KQVVSSCGVPVCPS 110 (300)
Q Consensus 47 ~~~~~D~vf~~lhG~~gEdg~iq~~le~~~---ipy~Gs~~~~~-----~l~~dK~~~-k~~l~~~gIptp~~ 110 (300)
+.--||=|||++||.- -.+.-|||+=. |-|+||.+.+. .-+.+|-.. ..=++.|++=.|+.
T Consensus 188 eaGaPdGvlnvvHG~k---~aVd~ll~HPdvKAvSFVGS~~~g~Yi~~tgsahgKRVQa~~GAKNHmvvmPDA 257 (478)
T TIGR01722 188 EAGAPDGVLNVVHGDK---EAVDRLLEHPDVKAVSFVGSVAVGRYIYETGSAHGKRVQALAGAKNHMVVMPDA 257 (478)
T ss_pred HCCCCCCEEEEEECCH---HHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEECCCCCCCEEECCCC
T ss_conf 6579987168661874---787776168971478521512466566320234787432035775340345874
No 447
>COG4022 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.43 E-value=43 Score=14.29 Aligned_cols=11 Identities=9% Similarity=0.039 Sum_probs=4.2
Q ss_pred EEEEEECCCCC
Q ss_conf 99997472658
Q gi|254781179|r 257 VFWLEINVQPG 267 (300)
Q Consensus 257 ~~~lEvN~~PG 267 (300)
+.+|++--.|=
T Consensus 266 ~lli~~~~lpv 276 (286)
T COG4022 266 PLLINTMELPV 276 (286)
T ss_pred CEEEEEEECCC
T ss_conf 61566521575
No 448
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=28.39 E-value=43 Score=14.28 Aligned_cols=41 Identities=24% Similarity=0.226 Sum_probs=25.8
Q ss_pred HHHHHHHCCCCEEEECCCCCC-CCCCHHHHHHHHHHHHCCCC
Q ss_conf 688887539989999254884-34310235666432100231
Q gi|254781179|r 42 VGLVLAHLKPDLAFNVLHGNF-GEDGLVQAILELLEIPYTHS 82 (300)
Q Consensus 42 ~~~~l~~~~~D~vf~~lhG~~-gEdg~iq~~le~~~ipy~Gs 82 (300)
....+...+||+||-..-+.. +.+..+..-|+..|||.+.-
T Consensus 83 n~E~il~l~PDvVi~~~~~~~~~~~~~~~~~l~~~GIpVv~~ 124 (342)
T cd01139 83 SVEKVLTLKPDLVILNIWAKTTAEESGILEKLEQAGIPVVFV 124 (342)
T ss_pred CHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 999996219988999443456544567999999719988999
No 449
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=28.32 E-value=43 Score=14.27 Aligned_cols=12 Identities=25% Similarity=0.349 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHH
Q ss_conf 023566643210
Q gi|254781179|r 67 LVQAILELLEIP 78 (300)
Q Consensus 67 ~iq~~le~~~ip 78 (300)
.+..+|+..+||
T Consensus 100 sL~~wL~~~~Ip 111 (383)
T CHL00197 100 SLVSYLKRHKIP 111 (383)
T ss_pred CHHHHHHHCCCC
T ss_conf 899999975986
No 450
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=28.31 E-value=43 Score=14.27 Aligned_cols=73 Identities=12% Similarity=0.109 Sum_probs=33.6
Q ss_pred ECCCCHHHHHHHHHHHHHHHHHHHC----CCEEEEECCCCC---------HHHHHHHCCCCEEEECCCCCCCC--CCHHH
Q ss_conf 3678712788999999999999987----988999615865---------68888753998999925488434--31023
Q gi|254781179|r 5 MGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRS---------VGLVLAHLKPDLAFNVLHGNFGE--DGLVQ 69 (300)
Q Consensus 5 ~GG~s~E~~iSl~S~~~i~~aL~~~----g~~v~~id~~~~---------~~~~l~~~~~D~vf~~lhG~~gE--dg~iq 69 (300)
-|..+..-.-....++...+.+.+. |..+.++-.|.. ....+.+.+.++++ |.+.- .-.+.
T Consensus 10 TG~~A~~G~~~~~g~~lAveeiNa~GGv~Gr~ielv~~Dd~~~p~~a~~~a~kLi~~d~V~~vi----G~~~S~~~~A~~ 85 (359)
T TIGR03407 10 SGTMAISETTLKDAELMAIEEINASGGVLGKKIEPVVEDGASDWPTFAEKARKLITQDKVAAVF----GCWTSASRKAVL 85 (359)
T ss_pred CCCCHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEE----CCCCCHHHHHHC
T ss_conf 6831120888999999999999860897885879998689999899999999999609907997----577757766525
Q ss_pred HHHHHHHHHCCC
Q ss_conf 566643210023
Q gi|254781179|r 70 AILELLEIPYTH 81 (300)
Q Consensus 70 ~~le~~~ipy~G 81 (300)
.+.+..+.++..
T Consensus 86 pv~~~~~~~~~~ 97 (359)
T TIGR03407 86 PVFEENNGLLFY 97 (359)
T ss_pred CHHHHCCCEEEE
T ss_conf 168872953783
No 451
>pfam01266 DAO FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Probab=28.30 E-value=43 Score=14.27 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=25.4
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
|+|+-|| .+|..++-.|.+.|++|.++|.+.
T Consensus 2 v~IIGaG---------i~Gls~A~~La~~G~~V~vie~~~ 32 (309)
T pfam01266 2 VVVIGGG---------IVGLSTAYELARRGLSVTLLERGD 32 (309)
T ss_pred EEEECCC---------HHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 9999927---------999999999997899599994999
No 452
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase; InterPro: IPR011821 Proteins in this entry are important in the interconversion of the sulphur-containing amino acids L-cysteine and L-methionine in bacteria. In bacteria, inorganic sulphur is reduced to sulphide, which is then used to displace the acetyl group of O-acetyl-L-serine to form the essential amino acid L-cysteine. Biosynthesis of L-methionine then occurs via the transsulphuration pathway which involves the sequential action of two pyridoxal 5'-phosphate (PLP) enzymes, cystathionine gamma-synthase (CGS) and cystathionine beta-lyase (CBL). Firstly CGS catalyses the formation of the intermediate cystathione from a homoserine ester and L-cysteine. This intermediate is then converted by CBL to L-homoserine, which is subsequently methylated by methionine synthase to form L-methionine. For more information see . The CGS enzyme (P00935 from SWISSPROT) from Escherichia coli is, like other CGS enzymes, a homotetramer composed of two catalytically active dimers . The active site of each dimer is found at the interface between the monomers and involves residues from each monomer. Catalysis occurs by alpha,gamma-elimination/replacement reactions..
Probab=27.94 E-value=44 Score=14.23 Aligned_cols=38 Identities=29% Similarity=0.384 Sum_probs=26.0
Q ss_pred HHHHHHHHHHCC-CEEEEECCCC--CHHHHHHHCCCCEEEE
Q ss_conf 999999999879-8899961586--5688887539989999
Q gi|254781179|r 19 GKACASALEDAG-FKVSQIDVDR--SVGLVLAHLKPDLAFN 56 (300)
Q Consensus 19 ~~~i~~aL~~~g-~~v~~id~~~--~~~~~l~~~~~D~vf~ 56 (300)
.-++.++|.++| |+|..+|..+ .+...|++..|-+||+
T Consensus 103 tYRLl~~lA~kG~~~v~fVDQ~D~~al~~ALa~kdPKLVlI 143 (383)
T TIGR02080 103 TYRLLNALAKKGQFKVQFVDQSDEQALEAALAQKDPKLVLI 143 (383)
T ss_pred HHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHCCCCEEEE
T ss_conf 48888645207833899860762899999997469847998
No 453
>pfam02670 DXP_reductoisom 1-deoxy-D-xylulose 5-phosphate reductoisomerase. This is a family of 1-deoxy-D-xylulose 5-phosphate reductoisomerases. This enzyme catalyses the formation of 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose-5-phosphate in the presence of NADPH. This reaction is part of the terpenoid biosynthesis pathway.
Probab=27.92 E-value=44 Score=14.23 Aligned_cols=38 Identities=21% Similarity=0.381 Sum_probs=24.4
Q ss_pred HHHHHHHHHHC--CCEEEEECCCCCHHH---HHHHCCCCEEEE
Q ss_conf 99999999987--988999615865688---887539989999
Q gi|254781179|r 19 GKACASALEDA--GFKVSQIDVDRSVGL---VLAHLKPDLAFN 56 (300)
Q Consensus 19 ~~~i~~aL~~~--g~~v~~id~~~~~~~---~l~~~~~D~vf~ 56 (300)
|++.++-+++. .|++..+-.+++... +..+.+|..|+.
T Consensus 11 G~~tL~Vi~~~~~~f~v~~Lsa~~N~~~L~~q~~~f~p~~v~i 53 (129)
T pfam02670 11 GTQTLDVIRRNPDRFEVVALSAGRNVELLAEQIKEFKPKYVAV 53 (129)
T ss_pred HHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHCCCCEEEE
T ss_conf 9999999995956718999983478999999999739979999
No 454
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=27.68 E-value=44 Score=14.20 Aligned_cols=48 Identities=25% Similarity=0.396 Sum_probs=31.2
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC-----------CHHHHHHHCCCCEEEECC
Q ss_conf 98367871278899999999999998798899961586-----------568888753998999925
Q gi|254781179|r 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-----------SVGLVLAHLKPDLAFNVL 58 (300)
Q Consensus 3 vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~-----------~~~~~l~~~~~D~vf~~l 58 (300)
++.|+.. .=|.++.+.|.+.|. +..++.+. .+...+...+||+|+|+.
T Consensus 4 LvtGa~G-------qLG~~l~~~l~~~~~-~~~~~~~~~~~~~Dit~~~~v~~~~~~~~Pd~IIN~a 62 (299)
T PRK09987 4 LLFGKTG-------QVGWELQRALAPLGN-LIALDVHSTDYCGDFSNPEGVAETVRKIRPDVIVNAA 62 (299)
T ss_pred EEECCCC-------HHHHHHHHHHHHCCC-EEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEECH
T ss_conf 9989999-------789999998665098-8998526300136789999999999965999999883
No 455
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=27.49 E-value=44 Score=14.18 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99999999975117
Q gi|254781179|r 286 RELLLWMVEDASCL 299 (300)
Q Consensus 286 ~~li~~ii~~A~~~ 299 (300)
..+...|++.. |.
T Consensus 171 ~~i~~~l~~~i-C~ 183 (185)
T cd01474 171 SGIIESVVKKA-CI 183 (185)
T ss_pred HHHHHHHHHHH-CC
T ss_conf 99999999852-87
No 456
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase; InterPro: IPR010121 Pyruvate phosphate dikinase (PPDK, or pyruvate orthophosphate dikinase) is found in plants, bacteria and archaea. The amino acid sequence identity between bacterial and plant enzymes is high, and they are similar in sequence to other PEP-utilizing enzymes. PPDK catalyses the reversible conversion of ATP and pyruvate to AMP and PEP (phosphoenolpyruvate). In bacteria such as Clostridium symbiosum, PPDK uses Mg2+ and NH4+ ions as cofactors . The enzyme has three domains: the N- and C-terminal domains each have an active site centre that catalyses a different step in the reaction, and the middle domain has a carrier histidine residue that moves between the two active centres. In plants, PPDK is localised predominantly in chloroplast stroma where it catalyses the rate-limiting step in the C4 photosynthetic pathway, namely the synthesis of PEP, which acts as the primary CO2 acceptor in C4 photosynthesis . PPDK activity in C4 plants is strictly regulated by light, its activity decreasing in darkness. This response is regulated by phosphorylation and dephosphorylation of the enzyme using ADP; such regulation is not seen in the bacterial form of the enzyme. PPDK is also found in C3 plants, but it is not known to have a photosynthetic role .; GO: 0050242 pyruvate phosphate dikinase activity.
Probab=27.39 E-value=29 Score=15.36 Aligned_cols=61 Identities=13% Similarity=0.130 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHCCCCCE---EEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH---HHHC
Q ss_conf 44444457753487645---799999976898399997472658882238999999839998999999999---7511
Q gi|254781179|r 227 VQRLAFLAHQAIGCRGI---SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE---DASC 298 (300)
Q Consensus 227 i~~~a~~~~~alg~~g~---~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~~ii~---~A~~ 298 (300)
+++...++++.++..+- -..+-+.. +=. -+-|+||+=|.- -| ..|++|+++..+.|+ +|+|
T Consensus 670 le~~~~~lA~~~~~~~~~~l~~~~~i~~-~v~--~L~E~NPMLGhR-------Gc-RLG~t~PEIy~MQvrAI~eAA~ 736 (920)
T TIGR01828 670 LEELVKKLAEDMNSNKEEELLTAEKILK-RVE--ELHEVNPMLGHR-------GC-RLGITYPEIYEMQVRAILEAAV 736 (920)
T ss_pred HHHHHHHHHHHCCCCCCHHCCCHHHHHH-HHH--HHHCCCCCCCCC-------CH-HEECCCCHHHHHHHHHHHHHHH
T ss_conf 8999999998627886311044789999-998--762248774537-------40-0104520267899999999888
No 457
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=27.21 E-value=45 Score=14.15 Aligned_cols=50 Identities=30% Similarity=0.367 Sum_probs=21.4
Q ss_pred HHHHHHHHCCCEEEEECCCCC----HHHHHHHCCCCEEEECCCCCCCCCCHHHH
Q ss_conf 999999987988999615865----68888753998999925488434310235
Q gi|254781179|r 21 ACASALEDAGFKVSQIDVDRS----VGLVLAHLKPDLAFNVLHGNFGEDGLVQA 70 (300)
Q Consensus 21 ~i~~aL~~~g~~v~~id~~~~----~~~~l~~~~~D~vf~~lhG~~gEdg~iq~ 70 (300)
...+.|++.|++|..+.+|++ +....+..+++..+-.+-....|.|.+|-
T Consensus 102 ~~~~~l~~~G~~v~~~~vd~~G~id~~~l~~~l~~~t~lvsi~~~nnetG~i~p 155 (354)
T TIGR03235 102 EPARALERNGFTVTYLEVDESGRVSVEELADAIRDDTLLVSIMHVNNETGSLQP 155 (354)
T ss_pred HHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCC
T ss_conf 999999964968999555789828779999872689779999887566676388
No 458
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.20 E-value=45 Score=14.15 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=26.8
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
++++.||.| -=|+++++.|.+.|++|+.+|.++
T Consensus 7 ~alVTGas~-------GIG~aia~~~a~~Ga~V~~~d~~~ 39 (237)
T PRK06550 7 TVLVTGAAS-------GIGLAQARAFLEQGAHVYGVDKSD 39 (237)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 999937477-------999999999998799999970861
No 459
>TIGR01702 CO_DH_cata carbon-monoxide dehydrogenase, catalytic subunit; InterPro: IPR010047 This entry describes the Ni-containing carbon monoxide dehydrogenase (CODH) family (1.2.99.2 from EC). These enzymes reversibly oxidise CO to CO(2), and play key roles in the energy-yielding pathways of various autotrophic anaerobes, allowing these organisms to grow with CO as the sole carbon source . The active sites of these enzymes contain Ni-iron-sulphur (NiFeS) clusters. This family also includes the CODH subunit of bifunctional CODH/acetyl-CoA synthetase (CODH/ACS), which contains two Ni-containing active sites to catalyse the formation of acetyl-CoA from CO(2)-derived CO , . CODH is related to hybrid cluster proteins (HCP, or prismane) (IPR010048 from INTERPRO), a complex whose activity is not yet fully described; the hybrid Fe-S cluster in HCPs is similar to the NiFeS cluster in CODH .; GO: 0016151 nickel ion binding, 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0051539 4 iron 4 sulfur cluster binding, 0006091 generation of precursor metabolites and energy, 0005737 cytoplasm.
Probab=27.12 E-value=40 Score=14.48 Aligned_cols=16 Identities=19% Similarity=0.189 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 6665544444445775
Q gi|254781179|r 221 LDIYKEVQRLAFLAHQ 236 (300)
Q Consensus 221 ~~~~~~i~~~a~~~~~ 236 (300)
.|..++|.++|+++|+
T Consensus 380 ~E~A~~iI~~AIeaFk 395 (647)
T TIGR01702 380 EETAKTIIEMAIEAFK 395 (647)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 8999999999999763
No 460
>PRK07308 flavodoxin; Validated
Probab=27.05 E-value=45 Score=14.13 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=35.6
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCCCCCCCCCHHH
Q ss_conf 289836787127889999999999999879889996158656888875399899992548843431023
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ 69 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~lhG~~gEdg~iq 69 (300)
|.|+||-.+.- +-.-|+.+++.|++.|++|.+.+.+.-....+.. .|+++... -++| ||.+|
T Consensus 4 i~IlygS~tGn---ae~~A~~i~~~l~~~G~~v~v~~~~~~~~~~l~~--~~~~ii~t-sT~G-~Ge~P 65 (147)
T PRK07308 4 AKIVYASMTGN---TEEIADIVADKLQELGHDVDVDECTTVDASDFED--ADIAIVAT-YTYG-DGDLP 65 (147)
T ss_pred EEEEEECCCHH---HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHCC--CCEEEEEE-CCCC-CCCCC
T ss_conf 69999889727---9999999999999759940761136499768611--88799995-5789-99787
No 461
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=26.93 E-value=45 Score=14.12 Aligned_cols=111 Identities=13% Similarity=0.144 Sum_probs=63.9
Q ss_pred HHHHHHCCCEEEEECCCCCHH---------------HHHHHCCCCE-EEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHH
Q ss_conf 999998798899961586568---------------8887539989-999254884343102356664321002310023
Q gi|254781179|r 23 ASALEDAGFKVSQIDVDRSVG---------------LVLAHLKPDL-AFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 (300)
Q Consensus 23 ~~aL~~~g~~v~~id~~~~~~---------------~~l~~~~~D~-vf~~lhG~~gEdg~iq~~le~~~ipy~Gs~~~~ 86 (300)
.+.|++.|+.-+++|.|+.+. ..++...+-+ |++. .....++...+.+||||+..-...
T Consensus 20 ~~~L~~~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSN-----n~e~RV~~~~~~l~v~fi~~A~KP 94 (175)
T COG2179 20 PDILKAHGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSN-----NKESRVARAAEKLGVPFIYRAKKP 94 (175)
T ss_pred HHHHHHCCCCEEEEECCCCEECCCCCCCCHHHHHHHHHHHHCCCEEEEEEC-----CCHHHHHHHHHHCCCCEEECCCCC
T ss_conf 999997598189981667511046998999999999999865977999818-----978888766652597234022596
Q ss_pred HHHCCCCHHCCCCCCCCEEECCCEEEECCCCCHHH-----HHCCC-CEEEEECCCCCCCCEEEEC
Q ss_conf 32036500100002121000012132022200012-----21058-6256432477642114325
Q gi|254781179|r 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----HLISP-PYVIKPLKGGSSLGIIVIK 145 (300)
Q Consensus 87 ~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~~~-----~~~~~-P~ivKP~~ggsS~Gv~~v~ 145 (300)
+..++ ++.+++.+++...-..+ +++... +..|+ -+.|+|.....+..-.+.+
T Consensus 95 ~~~~f-----r~Al~~m~l~~~~vvmV--GDqL~TDVlggnr~G~~tIlV~Pl~~~d~~~t~~nR 152 (175)
T COG2179 95 FGRAF-----RRALKEMNLPPEEVVMV--GDQLFTDVLGGNRAGMRTILVEPLVAPDGWITKINR 152 (175)
T ss_pred CHHHH-----HHHHHHCCCCHHHEEEE--CCHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHH
T ss_conf 27999-----99999809983687998--512556664134147279999871166405555568
No 462
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=26.78 E-value=46 Score=14.10 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH
Q ss_conf 999999999999879889996158656888875
Q gi|254781179|r 16 LSSGKACASALEDAGFKVSQIDVDRSVGLVLAH 48 (300)
Q Consensus 16 l~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~ 48 (300)
..-|..+++.|.+.|++|.+-+.++.+...+..
T Consensus 14 ~~ya~~i~~~Lr~~girv~~D~~~~~lg~ki~~ 46 (91)
T cd00860 14 LDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIRE 46 (91)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH
T ss_conf 999999999999889989996588987599999
No 463
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.77 E-value=46 Score=14.10 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=27.1
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf 289836787127889999999999999879889996158656888
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV 45 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~ 45 (300)
++|+.|+-|. +. + |.+|+++|.+.|.+|.+.+-++.+...
T Consensus 12 ~alITGaag~-~G--I--G~aiA~~la~~GA~V~i~~~~~~~~~~ 51 (272)
T PRK08159 12 RGLILGVANN-RS--I--AWGIAKACRAAGAELAFTYQGDALKKR 51 (272)
T ss_pred EEEEECCCCC-CH--H--HHHHHHHHHHCCCEEEEECCCHHHHHH
T ss_conf 9999889998-68--9--999999999869999997486689999
No 464
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.75 E-value=46 Score=14.10 Aligned_cols=37 Identities=14% Similarity=0.297 Sum_probs=27.5
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 289836787127889999999999999879889996158656
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV 42 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~ 42 (300)
++++.|+-|. +. + |.+++++|.+.|.+|.+.+.++..
T Consensus 8 ~alVTGaa~g-~G--I--G~aiA~~la~~Ga~V~i~~~~~~~ 44 (254)
T PRK07533 8 RGLVVGIANE-QS--I--AWGCARAFRALGAELAVTYLNDKA 44 (254)
T ss_pred EEEEECCCCC-CH--H--HHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 8999688898-08--9--999999999879999998288778
No 465
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=26.74 E-value=46 Score=14.10 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=11.8
Q ss_pred CCCHHCCCCCCCCEEEC
Q ss_conf 65001000021210000
Q gi|254781179|r 91 MDKMRSKQVVSSCGVPV 107 (300)
Q Consensus 91 ~dK~~~k~~l~~~gIpt 107 (300)
-|-...|++++..|+.+
T Consensus 173 gD~~eik~ll~~~Gl~~ 189 (427)
T cd01971 173 GDLEEIKRVLEGIGLKV 189 (427)
T ss_pred CCHHHHHHHHHHCCCEE
T ss_conf 56999999999859857
No 466
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=26.58 E-value=46 Score=14.08 Aligned_cols=68 Identities=19% Similarity=0.215 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECCC------------------CCHHHHHHHCCCCEEEECCCCCCCCCCHHHHH
Q ss_conf 127889999999999999879889996158------------------65688887539989999254884343102356
Q gi|254781179|r 10 SEREVSLSSGKACASALEDAGFKVSQIDVD------------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI 71 (300)
Q Consensus 10 ~E~~iSl~S~~~i~~aL~~~g~~v~~id~~------------------~~~~~~l~~~~~D~vf~~lhG~~gEdg~iq~~ 71 (300)
++|=||+.. .+...|..+|.+++-+... +.....+...+||+|+-. +...+ .+...
T Consensus 35 p~RIV~l~~--~~~eil~~Lg~~~VGv~~~~~~~p~~~k~v~~vG~~~~pnlE~I~aLkPDLIi~~--~~~~~--~~~~~ 108 (289)
T TIGR03659 35 EERIVATSV--AVTEILDKLDLDLVGVPTSQKTLPKRYKDVPEVGNPMSPDMEKIKSLKPTVVLSV--TTLEE--DLGPK 108 (289)
T ss_pred CCEEEECCC--CHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEC--CCCHH--HHHHH
T ss_conf 965998686--3799999869975999778766968871857218878999999973699789955--74258--78999
Q ss_pred HHHHHHHCCCCC
Q ss_conf 664321002310
Q gi|254781179|r 72 LELLEIPYTHSG 83 (300)
Q Consensus 72 le~~~ipy~Gs~ 83 (300)
|+..++|.+-.+
T Consensus 109 l~~~~i~v~~~~ 120 (289)
T TIGR03659 109 FKQLGVEATFLN 120 (289)
T ss_pred HHHCCCEEEEEC
T ss_conf 986097599983
No 467
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=26.34 E-value=46 Score=14.05 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=11.6
Q ss_pred HCCCCCCCCEEECCCEEEE
Q ss_conf 1000021210000121320
Q gi|254781179|r 95 RSKQVVSSCGVPVCPSILV 113 (300)
Q Consensus 95 ~~k~~l~~~gIptp~~~~~ 113 (300)
..-.+++++||++.+..++
T Consensus 140 ~~l~~L~e~~irvvpHiti 158 (275)
T COG1856 140 RSLLLLKENGIRVVPHITI 158 (275)
T ss_pred HHHHHHHHCCCEECEEEEE
T ss_conf 8999999709425305999
No 468
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=26.30 E-value=46 Score=14.05 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHC
Q ss_conf 31023566643210023100233203
Q gi|254781179|r 65 DGLVQAILELLEIPYTHSGILASALS 90 (300)
Q Consensus 65 dg~iq~~le~~~ipy~Gs~~~~~~l~ 90 (300)
...+..+|+..|||-+ ++..+-+|+
T Consensus 93 ~~sL~~~L~~~~IpgI-~gIDTRaLT 117 (356)
T PRK12838 93 KQSLDDYLKEKNIPGI-SGVDTRALV 117 (356)
T ss_pred CCCHHHHHHHCCCCEE-ECCCHHHHH
T ss_conf 4799999997698527-446489999
No 469
>PRK12744 short chain dehydrogenase; Provisional
Probab=26.27 E-value=47 Score=14.04 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=26.9
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
++|+.||.+ -=|++++..|.+.|.+|++++.+.
T Consensus 10 valVTGgs~-------GIG~aiA~~la~~Ga~vv~~~~~~ 42 (257)
T PRK12744 10 VVLIAGGAK-------NLGGLIARDLAAQGAKAVAIHYNS 42 (257)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 899928875-------899999999998799899993787
No 470
>PRK06484 short chain dehydrogenase; Validated
Probab=26.25 E-value=47 Score=14.04 Aligned_cols=33 Identities=27% Similarity=0.486 Sum_probs=27.1
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
++|+.||.+ -=|+++++.|.+.|++|...|.+.
T Consensus 7 valVTGas~-------GIG~aiA~~la~~Ga~V~~~dr~~ 39 (530)
T PRK06484 7 VVLVTGAAG-------GIGRACCQRFARAGDRVVMADRDL 39 (530)
T ss_pred EEEEECCCC-------HHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 999978366-------899999999998799999996888
No 471
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=26.07 E-value=47 Score=14.02 Aligned_cols=43 Identities=12% Similarity=-0.054 Sum_probs=31.0
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 999999999879889996158656888875399899992548843
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~lhG~~g 63 (300)
...++..|+++|.++..+..++-....+...+||.++. -|.+|
T Consensus 12 T~ni~~~l~~lg~~v~vv~~d~~~~~~i~~~~p~~Iil--S~GPg 54 (192)
T PRK08857 12 TYNLYQYFCELGAEVKVVRNDEIDIAGIEALNPSHLVI--SPGPC 54 (192)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEE--CCCCC
T ss_conf 99999999877992899969989999998429795999--89999
No 472
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=25.98 E-value=47 Score=14.01 Aligned_cols=41 Identities=15% Similarity=0.017 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEEC
Q ss_conf 6665544444445775348764579999997689839999747
Q gi|254781179|r 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 (300)
Q Consensus 221 ~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN 263 (300)
+|.....+++..+++.+|=.+||.-+|+.... ++ .||+=.-
T Consensus 213 ~e~~~~wr~a~r~~f~alf~kGY~vvD~~rgs-~~-~Y~vf~~ 253 (266)
T COG3375 213 PEEAAPWRDATRKAFTALFGKGYRVVDYKRGS-SR-NYVVFKK 253 (266)
T ss_pred HHHCCHHHHHHHHHHHHHHCCCEEEEEEECCC-CC-CEEEEEC
T ss_conf 33215399999999999862872888851478-76-4699964
No 473
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=25.93 E-value=47 Score=14.00 Aligned_cols=41 Identities=39% Similarity=0.519 Sum_probs=31.5
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCC
Q ss_conf 28983678712788999999999999987988999615865688887539
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~ 50 (300)
|+|+-+|. -|.+.+.+|++.|++|..++-.+...-++..++
T Consensus 4 iaIVGaGi---------AGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRR 44 (331)
T COG3380 4 IAIVGAGI---------AGLAAAYALREAGREVTVFEKGRGVGGRLATRR 44 (331)
T ss_pred EEEECCCH---------HHHHHHHHHHHCCCEEEEEECCCCCCCCHHEEC
T ss_conf 79975636---------889999999866957999973887553110000
No 474
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=25.93 E-value=47 Score=14.00 Aligned_cols=35 Identities=37% Similarity=0.542 Sum_probs=25.6
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf 89836787127889999999999999879889996158656888
Q gi|254781179|r 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV 45 (300)
Q Consensus 2 ~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~ 45 (300)
-||-|| .+|-+.+..|.+.||+|++++-...+.-.
T Consensus 128 LVIGGG---------vAGitAAl~La~~G~~v~LVEKepsiGGr 162 (622)
T COG1148 128 LVIGGG---------VAGITAALELADMGFKVYLVEKEPSIGGR 162 (622)
T ss_pred EEECCC---------HHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 998684---------89899999999759808999417864504
No 475
>TIGR01244 TIGR01244 conserved hypothetical protein TIGR01244; InterPro: IPR005939 This is a family of largely hypothetical proteins of unknown function. .
Probab=25.91 E-value=47 Score=14.00 Aligned_cols=72 Identities=18% Similarity=0.142 Sum_probs=51.3
Q ss_pred CCCHHHHHHHCCCCEEEECCCCCCCCCC------HHHHHHHHHHHH-CCCCCHHHHHHCCCCH-HCCCCCCCCEEECCCE
Q ss_conf 8656888875399899992548843431------023566643210-0231002332036500-1000021210000121
Q gi|254781179|r 39 DRSVGLVLAHLKPDLAFNVLHGNFGEDG------LVQAILELLEIP-YTHSGILASALSMDKM-RSKQVVSSCGVPVCPS 110 (300)
Q Consensus 39 ~~~~~~~l~~~~~D~vf~~lhG~~gEdg------~iq~~le~~~ip-y~Gs~~~~~~l~~dK~-~~k~~l~~~gIptp~~ 110 (300)
+++....+....+-.|+|. =+++||- .|+..++..|+- |++-++.+-.++-|.. .|++.+...+=|+.-|
T Consensus 16 ~~aD~a~aA~lGf~tvInN--RPD~Ee~~qp~~A~~~aaa~aAG~~Gy~H~Pv~~g~~~pd~ve~fraa~~aA~~PVLA~ 93 (136)
T TIGR01244 16 TKADIARAARLGFKTVINN--RPDREEEEQPDSAAIKAAAEAAGLTGYLHLPVTAGDLTPDDVETFRAALEAAESPVLAY 93 (136)
T ss_pred CHHHHHHHHHCCCEEEECC--CCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9888999985463665106--88888888887288999998568886100542178887626899999998228986753
Q ss_pred EE
Q ss_conf 32
Q gi|254781179|r 111 IL 112 (300)
Q Consensus 111 ~~ 112 (300)
--
T Consensus 94 CR 95 (136)
T TIGR01244 94 CR 95 (136)
T ss_pred CC
T ss_conf 14
No 476
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=25.68 E-value=48 Score=13.97 Aligned_cols=63 Identities=19% Similarity=0.229 Sum_probs=39.2
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECC-CCCCCCCCHHHHHHHHH--HHHCCC
Q ss_conf 9999999998798899961586568888753998999925-48843431023566643--210023
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVL-HGNFGEDGLVQAILELL--EIPYTH 81 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~l-hG~~gEdg~iq~~le~~--~ipy~G 81 (300)
.-++++.+.++|++|..+-.|......++..+||.+..-= -|.+.+-|....+++.+ .+|..|
T Consensus 14 tyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~G~~~~~i~~~~~~~PiLG 79 (191)
T COG0512 14 TYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAGISLELIRRFAGRIPILG 79 (191)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCHHHHHHHHHCCCCCEEE
T ss_conf 999999999739934999889658778860499989984899793773618999998608998899
No 477
>PRK06475 salicylate hydroxylase; Provisional
Probab=25.67 E-value=48 Score=13.97 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=24.6
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 2898367871278899999999999998798899961586
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR 40 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~ 40 (300)
|.|+-||+ +|-..+.+|.+.|++|.+++...
T Consensus 5 VlIVGaGi---------aGL~~A~~L~~~G~~v~V~E~~~ 35 (400)
T PRK06475 5 ILIAGAGV---------AGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred EEEECCCH---------HHHHHHHHHHHCCCCEEEECCCC
T ss_conf 99989588---------99999999997899999991799
No 478
>cd00228 eu-GS Eukaryotic Glutathione Synthetase (eu-GS); catalyses the production of glutathione from gamma-glutamylcysteine and glycine in an ATP-dependent manner. Belongs to the ATP-grasp superfamily.
Probab=25.52 E-value=27 Score=15.54 Aligned_cols=10 Identities=30% Similarity=0.431 Sum_probs=4.3
Q ss_pred HHHHCCCCCE
Q ss_conf 7753487645
Q gi|254781179|r 234 AHQAIGCRGI 243 (300)
Q Consensus 234 ~~~alg~~g~ 243 (300)
+...||+.|.
T Consensus 419 ~iSELGIfG~ 428 (471)
T cd00228 419 AISELGIYGT 428 (471)
T ss_pred EEECCCCEEE
T ss_conf 3230355189
No 479
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=25.41 E-value=48 Score=13.94 Aligned_cols=30 Identities=33% Similarity=0.454 Sum_probs=24.8
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 289836787127889999999999999879889996158
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD 39 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~ 39 (300)
|+|+-||+ .|...+.+|.+.|++|.+++..
T Consensus 5 V~IvGaG~---------aGl~lA~~L~~~G~~V~liE~~ 34 (387)
T COG0654 5 VAIVGAGP---------AGLALALALARAGLDVTLLERA 34 (387)
T ss_pred EEEECCCH---------HHHHHHHHHHHCCCCEEEEECC
T ss_conf 99999789---------9999999998289968999077
No 480
>pfam12062 HSNSD heparan sulfate-N-deacetylase. This family of proteins is are heparan sulfate N-deacetylase enzymes. This protein is found in eukaryotes. This proteinenzyme is often found associated with pfam00685.
Probab=25.21 E-value=49 Score=13.92 Aligned_cols=42 Identities=12% Similarity=0.094 Sum_probs=24.4
Q ss_pred CCCHHCCCCCCCCEEECCCEEEECCCCCHHHHHCCCCEEEEE
Q ss_conf 650010000212100001213202220001221058625643
Q gi|254781179|r 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132 (300)
Q Consensus 91 ~dK~~~k~~l~~~gIptp~~~~~~~~~~~~~~~~~~P~ivKP 132 (300)
+|+.+..+...+.|+.+.-+...+.........-|||+.+..
T Consensus 127 wNR~LLDKYC~ey~VgiigF~~~~e~sl~~~qlkgfpL~~~t 168 (487)
T pfam12062 127 WNRELLDKYCKEYGVGIIGFFKAPEDSLKSAQLKGFPLFLWQ 168 (487)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHCCCCCEEEEC
T ss_conf 889999999997286779996688766201103787659984
No 481
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=25.07 E-value=49 Score=13.90 Aligned_cols=14 Identities=21% Similarity=0.532 Sum_probs=5.4
Q ss_pred CCCCCHHHHHHCCC
Q ss_conf 02310023320365
Q gi|254781179|r 79 YTHSGILASALSMD 92 (300)
Q Consensus 79 y~Gs~~~~~~l~~d 92 (300)
|++-+....++..+
T Consensus 102 fi~rG~~~~~Ldr~ 115 (585)
T PRK04192 102 FLKRGVYVPALDRE 115 (585)
T ss_pred CCCCCCCCCCCCCC
T ss_conf 54478878887744
No 482
>TIGR01790 carotene-cycl lycopene cyclase family protein; InterPro: IPR010108 Carotenoids have important functions in photosynthesis, nutrition, and protection against oxidative damage, and are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. The final steps in the biosynthesis of carotenoids usually involve the cyclization of lycopene by one of two pathways: the formation of a beta ring by beta-cyclase, or an epsilon ring by epsilon-cyclase. Epsilon-cyclase adds only one ring, forming the monocyclic delta-carotene, whereas beta-cyclase introduces a ring at both ends of lycopene to form the bicyclic beta-carotene . Both enzymes show high sequence similarities, and may have evolved from the same ancestor . This family includes lycopene beta-and epsilion-cyclases, which are involved in the biosynthesis of carotenoids in bacteria and plants, and the related capsanthin capsorubin synthase (Ccs) from plants, which converts antheraxanthin or violaxanthin into capsanthin or capsorubin by a mechanism similar to lycopene cyclization.; GO: 0016705 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process.
Probab=25.05 E-value=49 Score=13.90 Aligned_cols=62 Identities=26% Similarity=0.345 Sum_probs=39.9
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHH--HCCCEEEEECCCCCHHHHHHHCCCC-EEEECCCCCCCCCCH------HHHH
Q ss_conf 289836787127889999999999999--8798899961586568888753998-999925488434310------2356
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALE--DAGFKVSQIDVDRSVGLVLAHLKPD-LAFNVLHGNFGEDGL------VQAI 71 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~--~~g~~v~~id~~~~~~~~l~~~~~D-~vf~~lhG~~gEdg~------iq~~ 71 (300)
++||-||+ +|-+|+..|. +.|.+|..|++.. + +-||.-.|.|+.|=. ++.+
T Consensus 2 ~~ViGgGp---------AG~aiA~~l~~a~~gL~V~~i~p~p-----------~f~~~~~tyg~w~~dl~~~~hawl~~l 61 (419)
T TIGR01790 2 LIVIGGGP---------AGLAIALELADARPGLRVQLIEPAP-----------PFLPGNNTYGVWDDDLSDLGHAWLADL 61 (419)
T ss_pred EEEECCCH---------HHHHHHHHHHHHCCCCEEEEECCCC-----------CCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 78874775---------7899999999750587189867888-----------767768744212222327899999988
Q ss_pred HHH--HH-HHCCCC
Q ss_conf 664--32-100231
Q gi|254781179|r 72 LEL--LE-IPYTHS 82 (300)
Q Consensus 72 le~--~~-ipy~Gs 82 (300)
++. -| +-|+++
T Consensus 62 ~~~~W~~~~~y~~~ 75 (419)
T TIGR01790 62 VEHRWSDAYEYRFP 75 (419)
T ss_pred HCCCCCCEEEECCC
T ss_conf 41638980688387
No 483
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=24.87 E-value=49 Score=13.88 Aligned_cols=75 Identities=15% Similarity=0.099 Sum_probs=0.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH------HHHCCCCEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 289836787127889999999999999879889996158656888------87539989999254884343102356664
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV------LAHLKPDLAFNVLHGNFGEDGLVQAILEL 74 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~------l~~~~~D~vf~~lhG~~gEdg~iq~~le~ 74 (300)
|||+..-.+.-.-..+ .+.+..++.+.||++.+.+.+.+.... +...++|-++.. ..+++...-..+..
T Consensus 2 Igvivp~l~npf~~~i--~~gi~~~a~~~gy~l~i~~s~~~~~~e~~~i~~l~~~~vDgiIl~---~~~~~~~~~~~~~~ 76 (267)
T cd06283 2 IGVIVADITNPFSSLV--LKGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVN---PTGNNKELYQRLAK 76 (267)
T ss_pred EEEEECCCCCHHHHHH--HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEC---CCCCCHHHHHHHHH
T ss_conf 9999799875999999--999999999869989999789998999999999996699999985---87799899999997
Q ss_pred HHHHCC
Q ss_conf 321002
Q gi|254781179|r 75 LEIPYT 80 (300)
Q Consensus 75 ~~ipy~ 80 (300)
.++|++
T Consensus 77 ~~iPvV 82 (267)
T cd06283 77 NGKPVV 82 (267)
T ss_pred CCCCEE
T ss_conf 699899
No 484
>PRK02948 cysteine desulfurase; Provisional
Probab=24.80 E-value=50 Score=13.87 Aligned_cols=66 Identities=24% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCCCC----HHHHHHHCCCCEEEECCCCCCCCCCHHH------HHHHHHHHHCC
Q ss_conf 2788999999999999987988999615865----6888875399899992548843431023------56664321002
Q gi|254781179|r 11 EREVSLSSGKACASALEDAGFKVSQIDVDRS----VGLVLAHLKPDLAFNVLHGNFGEDGLVQ------AILELLEIPYT 80 (300)
Q Consensus 11 E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~----~~~~l~~~~~D~vf~~lhG~~gEdg~iq------~~le~~~ipy~ 80 (300)
|| .|.....+.|++.|++|..+.+|++ ........+++..+-++-....|.|.+| .++...|+++.
T Consensus 97 EH----~sv~~~~~~l~~~G~~v~~i~~d~~G~id~~~l~~~l~~~t~LV~v~~asN~tG~i~pi~~I~~~a~~~g~~~~ 172 (381)
T PRK02948 97 EH----ASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAITEDTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFH 172 (381)
T ss_pred CC----CHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEEEECEEECCCCCCCHHHHHHHHHHHCCEEE
T ss_conf 22----00789999999729989996778888769999997568994699997502068647758899999987098798
No 485
>pfam00148 Oxidored_nitro Nitrogenase component 1 type Oxidoreductase.
Probab=24.71 E-value=50 Score=13.86 Aligned_cols=63 Identities=22% Similarity=0.349 Sum_probs=0.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC--------------------------CCHHHHHHHCCCCEEE
Q ss_conf 89836787127889999999999999879889996158--------------------------6568888753998999
Q gi|254781179|r 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------------RSVGLVLAHLKPDLAF 55 (300)
Q Consensus 2 ~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~--------------------------~~~~~~l~~~~~D~vf 55 (300)
+.++|+. .-+-.+.+.|.++|.++..+-.. .++...+...+||++|
T Consensus 275 v~v~g~~--------~~~~~l~~~L~ElG~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~d~~e~~~~i~~~~pDlii 346 (398)
T pfam00148 275 VAIYGDP--------DLAWGLARFLEELGMEVVAVGTGTGHPDDYERLKALLDGTLRVIDDADLEELEELIKELKPDLLI 346 (398)
T ss_pred EEEECCC--------HHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCEEE
T ss_conf 9998884--------57999999999879979999967898788998998547897799779999999998726999999
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 9254884343102356664321002
Q gi|254781179|r 56 NVLHGNFGEDGLVQAILELLEIPYT 80 (300)
Q Consensus 56 ~~lhG~~gEdg~iq~~le~~~ipy~ 80 (300)
- +..-..+.+.+|+||+
T Consensus 347 g--------~s~~~~~a~~~~ip~i 363 (398)
T pfam00148 347 G--------NSKERYLAKKLGIPLV 363 (398)
T ss_pred E--------CHHHHHHHHHCCCCEE
T ss_conf 8--------9178999997399889
No 486
>PRK09581 pleD response regulator PleD; Reviewed
Probab=24.65 E-value=50 Score=13.85 Aligned_cols=41 Identities=12% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEE
Q ss_conf 99999999999998798899961586568888753998999
Q gi|254781179|r 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAF 55 (300)
Q Consensus 15 Sl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf 55 (300)
|-.....+...|.+.||+|......+.-...+...+||+|+
T Consensus 11 ~~~~~~~l~~~L~~~~y~v~~a~~G~eAL~~~~~~~PDLIL 51 (457)
T PRK09581 11 IPANVKLLEAKLLAEYYTVLTASSGAEAIEICEREQPDIIL 51 (457)
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEE
T ss_conf 89999999999987899999989999999999718999899
No 487
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=24.64 E-value=50 Score=13.85 Aligned_cols=28 Identities=39% Similarity=0.464 Sum_probs=0.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 2898367871278899999999999998798899961
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID 37 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id 37 (300)
|+|+-|| ..|.+++-.|.+.|++|.++|
T Consensus 6 VvVIGaG---------i~G~s~A~~La~~G~~V~vle 33 (377)
T PRK11259 6 VIVIGLG---------SMGSAAGYYLARAGLRVLGID 33 (377)
T ss_pred EEEECCC---------HHHHHHHHHHHHCCCCEEEEC
T ss_conf 9999952---------999999999997899599992
No 488
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=24.64 E-value=50 Score=13.85 Aligned_cols=63 Identities=22% Similarity=0.174 Sum_probs=0.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC-----------------------------HHHHHHHCCCC
Q ss_conf 8983678712788999999999999987988999615865-----------------------------68888753998
Q gi|254781179|r 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----------------------------VGLVLAHLKPD 52 (300)
Q Consensus 2 ~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~-----------------------------~~~~l~~~~~D 52 (300)
+.++|++ .-+-.+.+.|.++|.++..+-.+.. +...+...+||
T Consensus 303 ~ai~~~~--------~~~~~~~~~l~ElG~~~~~v~t~~~~~~~~~~~~~~~~~~~~~~~v~~~~d~~el~~~i~~~~~d 374 (429)
T cd03466 303 AAIYGEP--------DFVVAITRFVLENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILDGADFFDIESYAKELKID 374 (429)
T ss_pred EEEEECC--------HHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCC
T ss_conf 9999573--------66999999999879978999838986778999999997458984898289999999999765999
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 9999254884343102356664321002
Q gi|254781179|r 53 LAFNVLHGNFGEDGLVQAILELLEIPYT 80 (300)
Q Consensus 53 ~vf~~lhG~~gEdg~iq~~le~~~ipy~ 80 (300)
+++--.|+.+ +.+.+|||++
T Consensus 375 liig~s~~k~--------iA~klgiP~l 394 (429)
T cd03466 375 VLIGNSYGRR--------IAEKLGIPLI 394 (429)
T ss_pred EEEECCCHHH--------HHHHHCCCEE
T ss_conf 9997852689--------9998099979
No 489
>TIGR02685 pter_reduc_Leis pteridine reductase; InterPro: IPR014058 Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family..
Probab=24.57 E-value=50 Score=13.84 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=0.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 28983678712788999999999999987988999
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ 35 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~ 35 (300)
+||+.||- -+=|.+|+..|.+.||+|.+
T Consensus 3 aA~vTGaA-------kRiG~sIAv~LH~~GyrVv~ 30 (283)
T TIGR02685 3 AAVVTGAA-------KRIGRSIAVKLHQEGYRVVV 30 (283)
T ss_pred EEEEECHH-------HHHHHHHHHHHHHCCCEEEE
T ss_conf 24650025-------55218999998508988999
No 490
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=24.51 E-value=41 Score=14.40 Aligned_cols=67 Identities=19% Similarity=0.284 Sum_probs=0.0
Q ss_pred CCEEEECCCCCCCCCCHHHHHHHHHH---HHCCCCCHHHHHHCCC-CHHCCCCCCCCEEECCCEEEECCCCCHHH
Q ss_conf 98999925488434310235666432---1002310023320365-00100002121000012132022200012
Q gi|254781179|r 51 PDLAFNVLHGNFGEDGLVQAILELLE---IPYTHSGILASALSMD-KMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 (300)
Q Consensus 51 ~D~vf~~lhG~~gEdg~iq~~le~~~---ipy~Gs~~~~~~l~~d-K~~~k~~l~~~gIptp~~~~~~~~~~~~~ 121 (300)
|+-|||++|| .+|.+ +.+++.-. |-||||......+... -...|.+..+.|=.- +.++..+.+.+..
T Consensus 192 P~gv~nvv~G-~~~~~--~~L~~~p~v~~vsFTGS~~~G~~I~~~aa~~~k~v~lELGGkn-p~IV~~DADld~a 262 (478)
T cd07085 192 PDGVLNVVHG-GKEAV--NALLDHPDIKAVSFVGSTPVGEYIYERAAANGKRVQALGGAKN-HAVVMPDADLEQT 262 (478)
T ss_pred CCCEEEEECC-CHHHH--HHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCC-CEEEECCCCHHHH
T ss_conf 9042888517-81689--9997398858799989836888899976512866998368867-2799578799999
No 491
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=24.49 E-value=50 Score=13.83 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH---HCCCCEE
Q ss_conf 678712788999999999999987988999615865688887---5399899
Q gi|254781179|r 6 GGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLA 54 (300)
Q Consensus 6 GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~---~~~~D~v 54 (300)
|+....+. .+-|+.+|++.||+|+.+..+.......+ +.++|+|
T Consensus 8 g~D~Hd~G-----~~iva~~l~~~GfeVi~lG~~~~~e~~~~~a~e~~ad~i 54 (128)
T cd02072 8 GSDCHAVG-----NKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAI 54 (128)
T ss_pred CCCHHHHH-----HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEE
T ss_conf 87653788-----999999999789729847988999999999987399999
No 492
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.44 E-value=50 Score=13.83 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=0.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCCC
Q ss_conf 289836787127889999999999999879889996158656888875399899992548
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~lhG 60 (300)
|+|+--| .||.++++.|.+.|++|...|..............--.+...|.
T Consensus 20 vlV~GlG---------~SG~s~a~~L~~~G~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~ 70 (476)
T PRK00141 20 VLVAGAG---------VSGLGIAKMLSELGCDVVVADDNETQRHMLIEVVDVADISTAQA 70 (476)
T ss_pred EEEEEEC---------HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEECCCCH
T ss_conf 8999227---------88999999999789979999899870357887479856515530
No 493
>pfam09274 ParG ParG. Members of this family of plasmid partition proteins adopt a ribbon-helix-helix fold, with a core of four alpha-helices. They are an essential component of the DNA partition complex of the multidrug resistance plasmid TP228.
Probab=24.32 E-value=51 Score=13.81 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=0.0
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 4726588822389999998399989999999997
Q gi|254781179|r 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 (300)
Q Consensus 262 vN~~PGlt~~s~~p~~~~~~G~s~~~li~~ii~~ 295 (300)
||.+-.=..+..|-.+|...|++..|++..+|+.
T Consensus 37 vnvN~dE~kH~rfKaACak~GtsitdVi~~LvD~ 70 (76)
T pfam09274 37 VNVNFDEEKHTRFKAACAKQGTSITDVINQLVDN 70 (76)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 5515668999999999998588499999999999
No 494
>pfam03575 Peptidase_S51 Peptidase family S51.
Probab=24.32 E-value=51 Score=13.81 Aligned_cols=69 Identities=25% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCEEEEECCCCCHHHHHHHC--CCCEEEECCCCCCC----------CCCHHHHHHHH--HHHHCCCCCHH
Q ss_conf 999999998798899961586568888753--99899992548843----------43102356664--32100231002
Q gi|254781179|r 20 KACASALEDAGFKVSQIDVDRSVGLVLAHL--KPDLAFNVLHGNFG----------EDGLVQAILEL--LEIPYTHSGIL 85 (300)
Q Consensus 20 ~~i~~aL~~~g~~v~~id~~~~~~~~l~~~--~~D~vf~~lhG~~g----------Edg~iq~~le~--~~ipy~Gs~~~ 85 (300)
....++++++|+++..++..+.....+... +-|++|- ..| +.|..+.+.+. .|++|.|.++-
T Consensus 3 ~~~~~~f~~lg~~v~~l~~~~~~~~~~~~~i~~ad~I~v----~GGnt~~ll~~l~~~g~~~~l~~~~~~G~~~~G~SAG 78 (154)
T pfam03575 3 EKFREALEKLGLEVSGLHLFTPSVEDIEAKILKADVIYV----GGGNTFHLLKLLRETGLDDIIREAVQAGLPYIGWSAG 78 (154)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCEEEE----CCCHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEECHH
T ss_conf 899999997699778986667974729999985999998----9875999999999868299999999859778850604
Q ss_pred HHHHCCC
Q ss_conf 3320365
Q gi|254781179|r 86 ASALSMD 92 (300)
Q Consensus 86 ~~~l~~d 92 (300)
+...+-+
T Consensus 79 a~i~~~~ 85 (154)
T pfam03575 79 ANVAGPS 85 (154)
T ss_pred HHHCCCC
T ss_conf 6643477
No 495
>PRK07588 hypothetical protein; Provisional
Probab=24.16 E-value=51 Score=13.79 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=0.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 289836787127889999999999999879889996158656
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV 42 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~ 42 (300)
|+|+-||+. |-+.+..|.+.||+|.+++-...+
T Consensus 3 VlIvGaGia---------GLalA~~L~r~G~~v~V~Er~~~~ 35 (391)
T PRK07588 3 IAISGAGIA---------GATLAHWLQRTGHEPTLIERAPKL 35 (391)
T ss_pred EEEECCCHH---------HHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 999993289---------999999998689998999038988
No 496
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.12 E-value=51 Score=13.79 Aligned_cols=43 Identities=12% Similarity=0.097 Sum_probs=0.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH
Q ss_conf 289836787127889999999999999879889996158656888875
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH 48 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~ 48 (300)
++|+.|+.| |.-=|.+++++|.+.|.+|.+.+.++.....++.
T Consensus 7 ~alITGaag-----~~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~ 49 (274)
T PRK08415 7 KGLIVGVAN-----NKSIAYGIAKACFEQGAELAFTYLNDALKKRVEP 49 (274)
T ss_pred EEEEECCCC-----CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
T ss_conf 799989999-----8379999999999869999998488789999999
No 497
>PHA02096 hypothetical protein
Probab=24.10 E-value=46 Score=14.06 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=0.0
Q ss_pred CCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 586256432477642114325989999988630036688542233357884
Q gi|254781179|r 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 (300)
Q Consensus 125 ~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~~~~~~~~vlVEefI~G~ 175 (300)
||--+|--+.-|||-||..-+++++....+...... ||||+.|.
T Consensus 13 gfchfv~gnl~g~~~gv~fh~swe~a~~~~~~ak~~-------i~eylkgt 56 (103)
T PHA02096 13 GFCHFVSGNLHGAFGGVMFHDSWEEADVSLKNAKKS-------IEEYLKGT 56 (103)
T ss_pred CEEEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHH-------HHHHHCCC
T ss_conf 426861474215545348735387766579989999-------99996466
No 498
>PRK10867 signal recognition particle protein; Provisional
Probab=24.10 E-value=51 Score=13.79 Aligned_cols=76 Identities=17% Similarity=0.146 Sum_probs=0.0
Q ss_pred EECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC----------CCHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHH
Q ss_conf 836787127889999999999999879889996158----------6568888753998999925488434310235666
Q gi|254781179|r 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD----------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73 (300)
Q Consensus 4 l~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~----------~~~~~~l~~~~~D~vf~~lhG~~gEdg~iq~~le 73 (300)
+|++......+++ ++...+..++.+|+++++|.. +.+..+-...+||-++-++.+..|-|..=|+--=
T Consensus 159 ~~~~~~~~dp~~i--a~~a~~~ak~~~~DvvivDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~GQ~a~~~a~~F 236 (453)
T PRK10867 159 FFPSDVGQKPVDI--VNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAF 236 (453)
T ss_pred EECCCCCCCHHHH--HHHHHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHH
T ss_conf 4367889988999--99999999977999999978760121088899999998763787137974322356689999999
Q ss_pred HHHHHCCC
Q ss_conf 43210023
Q gi|254781179|r 74 LLEIPYTH 81 (300)
Q Consensus 74 ~~~ipy~G 81 (300)
...++.+|
T Consensus 237 ~~~~~~~g 244 (453)
T PRK10867 237 NEALPLTG 244 (453)
T ss_pred HHHCCCCE
T ss_conf 98559870
No 499
>TIGR00512 aIF-2BI_fam translation initiation factor, putative, aIF-2BI family; InterPro: IPR005251 This family contains proteins designated as translation initiation factor 2B subunit 1 (alpha) and 5-methylthioribose-1-phosphate isomerase (MTNA, 5.3.1.23 from EC, ). The delineation of this family is based in part on a discussion and neighbour-joining phylogenetic study , , of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. The archaeal proteins are related to the common ancestor of eIF-2B alpha, beta, and delta rather then specifically to any one of them, and that designation of particular archaeal members as corresponding to eIF-2B alpha or eIF-2B delta is imprecise. It has been suggested that designating the archaeal proteins as translation initiation factors remains unproven. 5-methylthioribose-1-phosphate isomerase (MTNA) participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthio ribulose-1-phosphate . The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species..
Probab=24.01 E-value=51 Score=13.77 Aligned_cols=57 Identities=21% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCCCCC--CCCCH---------HHHHHHHHHHHC
Q ss_conf 99999999987988999615865688887539989999254884--34310---------235666432100
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF--GEDGL---------VQAILELLEIPY 79 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~lhG~~--gEdg~---------iq~~le~~~ipy 79 (300)
++-=+..|.+.|.+|.+| .|.--.+.+.+.+.|.|.- |.+ -+||. |.=+-.+++|||
T Consensus 170 arLT~WEl~~~GIpVtLI-TD~mAg~~Mq~~~IDkVIV---GADRIa~~GdvaNKIGTY~lAvlAK~h~IPF 237 (306)
T TIGR00512 170 ARLTVWELMQEGIPVTLI-TDSMAGHLMQKGMIDKVIV---GADRIARDGDVANKIGTYGLAVLAKAHNIPF 237 (306)
T ss_pred CHHHHHHHHCCCCCCEEE-CCCHHHHHCCCCEEEEEEE---CCCEEECCCCEEEHHHHHHHHHHHHCCCCCC
T ss_conf 124464442379760476-1214555355750405887---3312106893240066789999982069883
No 500
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=23.82 E-value=52 Score=13.75 Aligned_cols=69 Identities=25% Similarity=0.303 Sum_probs=0.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC-----HHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 28983678712788999999999999987988999615865-----6888875399899992548843431023566643
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELL 75 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~-----~~~~l~~~~~D~vf~~lhG~~gEdg~iq~~le~~ 75 (300)
+.++.||.. +..-..+++.|.+.|.++.++...++ +...++....++.+-.-.|..|..|.+..+|+.+
T Consensus 101 ~llvaGG~G------iaPl~~l~~~l~~~~~~v~~i~G~r~~~~l~~~~el~~~~~~v~i~tdDGs~G~~G~vtd~l~~~ 174 (246)
T cd06218 101 VLLVGGGIG------IAPLLFLAKQLAERGIKVTVLLGFRSADDLFLVEEFEALGAEVYVATDDGSAGTKGFVTDLLKEL 174 (246)
T ss_pred EEEEECCCC------HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEHHHHHHHH
T ss_conf 999965731------54399999999974992899997477688544999997379299994789997336547989865
Done!