HHsearch alignment for GI: 254781179 and conserved domain: pfam00289

>pfam00289 CPSase_L_chain Carbamoyl-phosphate synthase L chain, N-terminal domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=95.62  E-value=0.033  Score=34.20  Aligned_cols=67  Identities=13%  Similarity=0.099  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHCCCEEEEECCCCC-----------------------------HHHHHHHCCCCEEEECCCCCCCCCCHHH
Q ss_conf             99999999987988999615865-----------------------------6888875399899992548843431023
Q gi|254781179|r   19 GKACASALEDAGFKVSQIDVDRS-----------------------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQ   69 (300)
Q Consensus        19 ~~~i~~aL~~~g~~v~~id~~~~-----------------------------~~~~l~~~~~D~vf~~lhG~~gEdg~iq   69 (300)
T Consensus        13 A~ri~rt~re~gi~~v~i~s~~d~~s~~~~~ad~~~~~~~~~~~~~Yl~~~~Ii~ia~~~~~~aihpG-yGflsEn~~fa   91 (109)
T pfam00289        13 AVRIIRALRELGIETVAVNSNPDTVSTHVRLADEAYFLGPGPASESYLNIERILDIAEKEGADAIHPG-YGFLSENAEFA   91 (109)
T ss_pred             HHHHHHHHHHCCCCEEEEECHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEECC-CCCCCCCHHHH
T ss_conf             99999999986997999963344152256650576534799832111379999999998188968779-76233599999


Q ss_pred             HHHHHHHHHCCCCCHHH
Q ss_conf             56664321002310023
Q gi|254781179|r   70 AILELLEIPYTHSGILA   86 (300)
Q Consensus        70 ~~le~~~ipy~Gs~~~~   86 (300)
T Consensus        92 ~~~~~~Gi~fiGPs~~~  108 (109)
T pfam00289        92 EACEKAGITFIGPSPEA  108 (109)
T ss_pred             HHHHHCCCEEECCCHHH
T ss_conf             99998889899958354