HHsearch alignment for GI: 254781179 and conserved domain: pfam00289
>pfam00289 CPSase_L_chain Carbamoyl-phosphate synthase L chain, N-terminal domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=95.62 E-value=0.033 Score=34.20 Aligned_cols=67 Identities=13% Similarity=0.099 Sum_probs=47.0
Q ss_pred HHHHHHHHHHCCCEEEEECCCCC-----------------------------HHHHHHHCCCCEEEECCCCCCCCCCHHH
Q ss_conf 99999999987988999615865-----------------------------6888875399899992548843431023
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRS-----------------------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQ 69 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~-----------------------------~~~~l~~~~~D~vf~~lhG~~gEdg~iq 69 (300)
T Consensus 13 A~ri~rt~re~gi~~v~i~s~~d~~s~~~~~ad~~~~~~~~~~~~~Yl~~~~Ii~ia~~~~~~aihpG-yGflsEn~~fa 91 (109)
T pfam00289 13 AVRIIRALRELGIETVAVNSNPDTVSTHVRLADEAYFLGPGPASESYLNIERILDIAEKEGADAIHPG-YGFLSENAEFA 91 (109)
T ss_pred HHHHHHHHHHCCCCEEEEECHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEECC-CCCCCCCHHHH
T ss_conf 99999999986997999963344152256650576534799832111379999999998188968779-76233599999
Q ss_pred HHHHHHHHHCCCCCHHH
Q ss_conf 56664321002310023
Q gi|254781179|r 70 AILELLEIPYTHSGILA 86 (300)
Q Consensus 70 ~~le~~~ipy~Gs~~~~ 86 (300)
T Consensus 92 ~~~~~~Gi~fiGPs~~~ 108 (109)
T pfam00289 92 EACEKAGITFIGPSPEA 108 (109)
T ss_pred HHHHHCCCEEECCCHHH
T ss_conf 99998889899958354